Citrus Sinensis ID: 004704

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-----
Protein Sequence
MNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPDKGQFATFDESSYRGNPSLCAWLIQQKYSRTLKPTTTQASGAEEEEEEEDDDESAIDMVTLYSSFGASYVTVILVLIAILWINSYWRRLWFYSIDRCINTWYYWLSKYVLCR
Secondary Structure (PSIPRED)
cccccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccHHHHcccccccEEEccccccccccccccccccccccEEEcccccccccccHHHcccccccEEEcccccccEEccHHHHHccccccEEEcccccccEEccccccccccccEEEcccccccccccccHHHccccccEEEcccccccccccccccccccccEEEcccccccEEccHHHHcccccccEEEccccEEEEEccccccccccccEEEcccccEEccccccccccccccEEEcccccccccccHHHHHccccccEEEccccccEEEccccccccccccEEEcccccccccccccccccccccEEccccccEEcccccccccccccEEEcccccccccccccccccccccEEEccccccccccHHHHHccccccEEEcccccccccccccHHHHHHccccccccccccccccccccccccEEEcccccccccccHHHHHHHHHHHHccccccEEEEEEEEccEEEEccccccccEEEEcccccccccccHHHHccccccccccccccccccccccHHccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEEEEHHHHHHHHHHHHHcccHHHHHHHHHHHHccEEEEEEEEEEEEc
Secondary Structure Prediction (SSPRO)
cccccccccccccHHHccccccEEEEcccccccccccHHHcccccccEEEcccccccccccHHHHHccccccEEEEccccccccccHHHHccccccEEEEEccccccccccHHHcccccccEEEcccccccccccHHHHHccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHHHHcccccEEEcccccccccccHHHHccccccEEEEccccccccccHHHHHccccccEEEcccccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcHHHcEEEEcccccccccccHHHccccccEEEEccccccccccccHccccccEEEEEccccccccccHHHccccccEEEEEccccccccccHHHccccccEEEEEccccccccccHHHccccccEEEEcccccccccccHHHHcHHHHHHHHcccccccccccHccccccEEEEcccccccccccHHccccccccEEEccccccccccccccccccHHHccccccEEEEcccccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccccEEcccHHHHHcccccEEEccccEEEEEccccccHHHccHHHcccccEEcccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mnlernfigspliTCLKNltrlkildissnqlngslpsvISNLTsleyldlshnnfegmfplsslanhsKLEGLLLSTrnntlhvktenwlpTSQLIVLGLtkcnlngsypdfllHQYHLKYLdlshnklvgnfptwllrnnpklEVLLLKNnsfsgilqlpkakhdflhhldiscnnfrgklphNMGVILQKLMYMDISkncfegnipysagemkELSLLDLSrnyfsgglsqsvVTGCFSLELldlsnnnfegqffsEYMNLTRLRHLYfennnfsgkikdgllsstslQVLDISnnmlsghiphwmgnfSSELEILSMSKnhlegnvpvqlnnlerlrildisenrlsgpiasslnlssVEHLSLQKnalnglipgelfrSCKLVtlnlrdntfsgriphqinehSNLRFLLLggnhlqgpipdqLCQLQKLAMMDlsrnkfsgsippcfanvlswrvgsddvlngsklnspeldeeiefgslgnnrssntMFGMWRWLSALEKRAAIDERVEIEFAMKNRYeiyngsnvnrvtgldlscnqltgeipsdiGQLQAILALNLsnnslsgsipesfsnlkMIESLDISynkltgqippqltaLNFLSIFNVSynnlsgrtpdkgqfatfdessyrgnpsLCAWLIQQKYsrtlkptttqasgaeeeeeeedddesaIDMVTLYSSFGASYVTVILVLIAILWINSYWRRLWFYSIDRCINTWYYWLSKYVLCR
Flexible Loop (DISEMBL)
mnlernfigspLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIefgslgnnrssNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPDKGQFATFDESSYRGNPSLCAWLIQQKYsrtlkptttqasgaeeeeeeedddesaIDMVTLYSSFGASYVTVILVLIAILWINSYWRRLWFYSIDRCINTWYYWLSKYVLCR
Low Complexity Region (SEG)
MNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILAlnlsnnslsGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPDKGQFATFDESSYRGNPSLCAWLIQQKYSRTLKPTTTQASGAeeeeeeedddeSAIDMVTLYSSFGASYVTVILVLIAILWINSYWRRLWFYSIDRCINTWYYWLSKYVLCR
Disordered region (IsUnstruct)
*****NFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVL*************************NTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSL***IPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGR*****QFATFDESSYRGNPSLCAWLIQQKY***************************IDMVTLYSSFGASYVTVILVLIAILWINSYWRRLWFYSIDRCINTWYYWLSKYVLC*
Disordered Region (DISOPRED)
MNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPDKGQFATFDESSYRGNPSLCAWLIQQ*****************************IDMVTLYSSFGASYVTVILVLIAILWINSYWRRLWFYSIDRCINTWYYWLSKYVLCR
Disordered Region (DISEMBL)
MNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPDKGQFATFDESSYRGNPSLCAWLIQQKYSRTL**********************AIDMVTLYSSFGASYVTVILVLIAILWINSYWRRLWFYSIDRCINTWYYWLSKYVLCR
Disordered Region (DISPRO)
*NL*RNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPDKGQFATFDESSYRGNPSLCAWLIQQKYS*********************DDESAIDMVTLYSSFGASYVTVILVLIAILWINSYWRRLWFYSIDRCINTWYYWLSKYVLCR
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPDKGQFATFDESSYRGNPSLCAWLIQQKYSRTLKPTTTQASGAEEEEEEEDDDESAIDMVTLYSSFGASYVTVILVLIAILWINSYWRRLWFYSIDRCINTWYYWLSKYVLCR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	735	2.2.26 [Sep-21-2011]
Q8L899	1207	Systemin receptor SR160 O	N/A	no	0.918	0.559	0.327	3e-67
Q8GUQ5	1207	Brassinosteroid LRR recep	N/A	no	0.918	0.559	0.327	4e-67
Q9FL28	1173	LRR receptor-like serine/	no	no	0.857	0.537	0.310	8e-66
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.840	0.494	0.307	6e-64
Q9ZWC8	1166	Serine/threonine-protein	no	no	0.827	0.521	0.319	7e-62
Q9C9H7	847	Receptor-like protein 12	no	no	0.798	0.693	0.304	3e-60
Q9LJF3	1164	Receptor-like protein kin	no	no	0.829	0.524	0.322	4e-59
Q9FZ59	1088	Leucine-rich repeat recep	no	no	0.794	0.536	0.304	2e-57
Q9FIZ3	1252	LRR receptor-like serine/	no	no	0.873	0.512	0.287	2e-57
O22476	1196	Protein BRASSINOSTEROID I	no	no	0.825	0.507	0.321	2e-57

>sp|Q8L899|BRI1_SOLPE Systemin receptor SR160 OS=Solanum peruvianum PE=1 SV=1

 Score =  256 bits (655), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 233/712 (32%), Positives = 345/712 (48%), Gaps = 37/712 (5%)

Query: 1   MNLERNFIGSPL--ITCLKNLTRLKILDISSNQLNGSLPSVISNLT-SLEYLDLSHNNFE 57
           ++L  N I  P+  I+     + LK L++S N L+     ++   T SL+ LDLS+NN  
Sbjct: 139 IDLAENTISGPISDISSFGVCSNLKSLNLSKNFLDPPGKEMLKGATFSLQVLDLSYNNIS 198

Query: 58  G--MFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLL 115
           G  +FP  S     +LE    S + N L       L    L  L L+  N +  +P F  
Sbjct: 199 GFNLFPWVSSMGFVELE--FFSIKGNKLAGSIPE-LDFKNLSYLDLSANNFSTVFPSFK- 254

Query: 116 HQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDIS 175
              +L++LDLS NK  G+  + L  +  KL  L L NN F G++  PK   + L +L + 
Sbjct: 255 DCSNLQHLDLSSNKFYGDIGSSL-SSCGKLSFLNLTNNQFVGLV--PKLPSESLQYLYLR 311

Query: 176 CNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQS 235
            N+F+G  P+ +  + + ++ +D+S N F G +P S GE   L L+D+S N FSG L   
Sbjct: 312 GNDFQGVYPNQLADLCKTVVELDLSYNNFSGMVPESLGECSSLELVDISNNNFSGKLPVD 371

Query: 236 VVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSS--TSLQV 293
            +    +++ + LS N F G     + NL +L  L   +NN +G I  G+      +L+V
Sbjct: 372 TLLKLSNIKTMVLSFNKFVGGLPDSFSNLPKLETLDMSSNNLTGIIPSGICKDPMNNLKV 431

Query: 294 LDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGP 353
           L + NN+  G IP  + N  S+L  L +S N+L G++P  L +L +L+ L +  N+LSG 
Sbjct: 432 LYLQNNLFKGPIPDSLSN-CSQLVSLDLSFNYLTGSIPSSLGSLSKLKDLILWLNQLSGE 490

Query: 354 IASSL-NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLR 412
           I   L  L ++E+L L  N L G IP  L    KL  ++L +N  SG IP  +   SNL 
Sbjct: 491 IPQELMYLQALENLILDFNDLTGPIPASLSNCTKLNWISLSNNQLSGEIPASLGRLSNLA 550

Query: 413 FLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSI-PPCFANVLSWRVGSDDVLNGSK 471
            L LG N + G IP +L   Q L  +DL+ N  +GSI PP F    +  V    +L G +
Sbjct: 551 ILKLGNNSISGNIPAELGNCQSLIWLDLNTNFLNGSIPPPLFKQSGNIAVA---LLTGKR 607

Query: 472 LNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGS 531
               + D   E    GN       FG  R     E+   I  R    F    R       
Sbjct: 608 YVYIKNDGSKECHGAGNLLE----FGGIRQ----EQLDRISTRHPCNFTRVYRGITQPTF 659

Query: 532 NVN-RVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDIS 590
           N N  +  LDLS N+L G IP ++G +  +  LNL +N LSG IP+    LK +  LD+S
Sbjct: 660 NHNGSMIFLDLSYNKLEGSIPKELGAMYYLSILNLGHNDLSGMIPQQLGGLKNVAILDLS 719

Query: 591 YNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPDKGQFATFDESSYRGNPSLCAWLIQQK 650
           YN+  G IP  LT+L  L   ++S NNLSG  P+   F TF +  +  N SLC + +   
Sbjct: 720 YNRFNGTIPNSLTSLTLLGEIDLSNNNLSGMIPESAPFDTFPDYRFANN-SLCGYPLPLP 778

Query: 651 YSRTLKPTTTQASGAEEEEEEEDDDESAIDMVTLYSSFGASYVTVILVLIAI 702
            S   K    Q   +   +       +   + +L+  FG       L+++AI
Sbjct: 779 CSSGPKSDANQHQKSHRRQASLAGSVAMGLLFSLFCIFG-------LIIVAI 823

Receptor with a serine/threonine-protein kinase activity. Involved in the perception of systemin, a peptide hormone responsible for the systemic activation of defense genes in leaves of wounded plants. May also regulate, in response to brassinosteroid binding, a signaling cascade involved in plant development.
Solanum peruvianum (taxid: 4082)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q8GUQ5|BRI1_SOLLC Brassinosteroid LRR receptor kinase OS=Solanum lycopersicum GN=CURL3 PE=1 SV=1

 Score =  256 bits (654), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 233/712 (32%), Positives = 346/712 (48%), Gaps = 37/712 (5%)

Query: 1   MNLERNFIGSPL--ITCLKNLTRLKILDISSNQLNGSLPSVISNLT-SLEYLDLSHNNFE 57
           ++L  N I  P+  I+     + LK L++S N L+     ++   T SL+ LDLS+NN  
Sbjct: 139 IDLAENTISGPISDISSFGVCSNLKSLNLSKNFLDPPGKEMLKAATFSLQVLDLSYNNIS 198

Query: 58  G--MFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLL 115
           G  +FP  S     +LE    S + N L       L    L  L L+  N +  +P F  
Sbjct: 199 GFNLFPWVSSMGFVELE--FFSLKGNKLAGSIPE-LDFKNLSYLDLSANNFSTVFPSFK- 254

Query: 116 HQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDIS 175
              +L++LDLS NK  G+  + L  +  KL  L L NN F G++  PK   + L +L + 
Sbjct: 255 DCSNLQHLDLSSNKFYGDIGSSL-SSCGKLSFLNLTNNQFVGLV--PKLPSESLQYLYLR 311

Query: 176 CNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQS 235
            N+F+G  P+ +  + + ++ +D+S N F G +P S GE   L L+D+S N FSG L   
Sbjct: 312 GNDFQGVYPNQLADLCKTVVELDLSYNNFSGMVPESLGECSSLELVDISYNNFSGKLPVD 371

Query: 236 VVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSS--TSLQV 293
            ++   +++ + LS N F G     + NL +L  L   +NN +G I  G+      +L+V
Sbjct: 372 TLSKLSNIKTMVLSFNKFVGGLPDSFSNLLKLETLDMSSNNLTGVIPSGICKDPMNNLKV 431

Query: 294 LDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGP 353
           L + NN+  G IP  + N  S+L  L +S N+L G++P  L +L +L+ L +  N+LSG 
Sbjct: 432 LYLQNNLFKGPIPDSLSN-CSQLVSLDLSFNYLTGSIPSSLGSLSKLKDLILWLNQLSGE 490

Query: 354 IASSL-NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLR 412
           I   L  L ++E+L L  N L G IP  L    KL  ++L +N  SG IP  +   SNL 
Sbjct: 491 IPQELMYLQALENLILDFNDLTGPIPASLSNCTKLNWISLSNNQLSGEIPASLGRLSNLA 550

Query: 413 FLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSI-PPCFANVLSWRVGSDDVLNGSK 471
            L LG N + G IP +L   Q L  +DL+ N  +GSI PP F    +  V    +L G +
Sbjct: 551 ILKLGNNSISGNIPAELGNCQSLIWLDLNTNFLNGSIPPPLFKQSGNIAVA---LLTGKR 607

Query: 472 LNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGS 531
               + D   E    GN       FG  R     E+   I  R    F    R       
Sbjct: 608 YVYIKNDGSKECHGAGNLLE----FGGIRQ----EQLDRISTRHPCNFTRVYRGITQPTF 659

Query: 532 NVN-RVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDIS 590
           N N  +  LDLS N+L G IP ++G +  +  LNL +N LSG IP+    LK +  LD+S
Sbjct: 660 NHNGSMIFLDLSYNKLEGSIPKELGAMYYLSILNLGHNDLSGMIPQQLGGLKNVAILDLS 719

Query: 591 YNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPDKGQFATFDESSYRGNPSLCAWLIQQK 650
           YN+  G IP  LT+L  L   ++S NNLSG  P+   F TF +  +  N SLC + +   
Sbjct: 720 YNRFNGTIPNSLTSLTLLGEIDLSNNNLSGMIPESAPFDTFPDYRFANN-SLCGYPLPIP 778

Query: 651 YSRTLKPTTTQASGAEEEEEEEDDDESAIDMVTLYSSFGASYVTVILVLIAI 702
            S   K    Q   +   +       +   + +L+  FG       L+++AI
Sbjct: 779 CSSGPKSDANQHQKSHRRQASLAGSVAMGLLFSLFCIFG-------LIIVAI 823

Receptor with a serine/threonine-protein kinase activity. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development, including expression of light- and stress-regulated genes, promotion of cell elongation, normal leaf and chloroplast senescence, and flowering. May be involved in a feedback regulation of brassinosteroid biosynthesis. May be also involved in the perception of systemin, a peptide hormone responsible for the systemic activation of defense genes in leaves of wounded plants.

Solanum lycopersicum (taxid: 4081)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score =  252 bits (643), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 231/745 (31%), Positives = 350/745 (46%), Gaps = 115/745 (15%)

Query: 3   LERNFIG--SPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMF 60
           LE+   G  SP I    NLT L++LD++SN   G +P+ I  LT L  L L  N F G  
Sbjct: 80  LEKQLEGVLSPAIA---NLTYLQVLDLTSNSFTGKIPAEIGKLTELNQLILYLNYFSGSI 136

Query: 61  PLSSLANHSKLEGLL-LSTRNNTLHVKT-ENWLPTSQLIVLGLTKCNLNGSYPDFLLHQY 118
           P    +   +L+ +  L  RNN L     E    TS L+++G    NL G  P+ L    
Sbjct: 137 P----SGIWELKNIFYLDLRNNLLSGDVPEEICKTSSLVLIGFDYNNLTGKIPECLGDLV 192

Query: 119 HLKY------------------------LDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNS 154
           HL+                         LDLS N+L G  P     N   L+ L+L  N 
Sbjct: 193 HLQMFVAAGNHLTGSIPVSIGTLANLTDLDLSGNQLTGKIPRDF-GNLLNLQSLVLTENL 251

Query: 155 FSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGE 214
             G +         L  L++  N   GK+P  +G ++Q L  + I KN    +IP S   
Sbjct: 252 LEGDIPAEIGNCSSLVQLELYDNQLTGKIPAELGNLVQ-LQALRIYKNKLTSSIPSSLFR 310

Query: 215 MKELSLLDLSRNYFSGGLSQSVVTGCF-SLELLDLSNNNFEGQFFSEYMNL--------- 264
           + +L+ L LS N+  G +S+ +  G   SLE+L L +NNF G+F     NL         
Sbjct: 311 LTQLTHLGLSENHLVGPISEEI--GFLESLEVLTLHSNNFTGEFPQSITNLRNLTVLTVG 368

Query: 265 ---------------TRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWM 309
                          T LR+L   +N  +G I   + + T L++LD+S+N ++G IP   
Sbjct: 369 FNNISGELPADLGLLTNLRNLSAHDNLLTGPIPSSISNCTGLKLLDLSHNQMTGEIPRGF 428

Query: 310 GNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSL-NLSSVEHLSL 368
           G  +  L  +S+ +NH  G +P  + N   L  L +++N L+G +   +  L  +  L +
Sbjct: 429 GRMN--LTFISIGRNHFTGEIPDDIFNCSNLETLSVADNNLTGTLKPLIGKLQKLRILQV 486

Query: 369 QKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQ 428
             N+L G IP E+     L  L L  N F+GRIP +++  + L+ L +  N L+GPIP++
Sbjct: 487 SYNSLTGPIPREIGNLKDLNILYLHSNGFTGRIPREMSNLTLLQGLRMYSNDLEGPIPEE 546

Query: 429 LCQLQKLAMMDLSRNKFSGSIPPCFANV--LSWRVGSDDVLNGSK---------LNSPEL 477
           +  ++ L+++DLS NKFSG IP  F+ +  L++     +  NGS          LN+ ++
Sbjct: 547 MFDMKLLSVLDLSNNKFSGQIPALFSKLESLTYLSLQGNKFNGSIPASLKSLSLLNTFDI 606

Query: 478 DEEIEFGSLGN-------------NRSSNTMFG-MWRWLSALEKRAAIDERVEIEFAMKN 523
            + +  G++               N S+N + G + + L  LE    ID        + N
Sbjct: 607 SDNLLTGTIPGELLASLKNMQLYLNFSNNLLTGTIPKELGKLEMVQEID--------LSN 658

Query: 524 RYEIYNGS------NVNRVTGLDLSCNQLTGEIPSDIGQ-LQAILALNLSNNSLSGSIPE 576
              +++GS          V  LD S N L+G IP ++ Q +  I++LNLS NS SG IP+
Sbjct: 659 N--LFSGSIPRSLQACKNVFTLDFSQNNLSGHIPDEVFQGMDMIISLNLSRNSFSGEIPQ 716

Query: 577 SFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPDKGQFATFDESSY 636
           SF N+  + SLD+S N LTG+IP  L  L+ L    ++ NNL G  P+ G F   + S  
Sbjct: 717 SFGNMTHLVSLDLSSNNLTGEIPESLANLSTLKHLKLASNNLKGHVPESGVFKNINASDL 776

Query: 637 RGNPSLCAWLIQQKYSRTLKPTTTQ 661
            GN  LC         + LKP T +
Sbjct: 777 MGNTDLCG------SKKPLKPCTIK 795

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score =  246 bits (627), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 209/679 (30%), Positives = 321/679 (47%), Gaps = 61/679 (8%)

Query: 3   LERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPL 62
           L+ N++  P+   L N + L +   + N LNG++P+ +  L +LE L+L++N+  G  P 
Sbjct: 198 LQDNYLEGPIPAELGNCSDLTVFTAAENMLNGTIPAELGRLENLEILNLANNSLTGEIP- 256

Query: 63  SSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKY 122
           S L   S+L+ L L   N    +  ++      L  L L+  NL G  P+   +   L  
Sbjct: 257 SQLGEMSQLQYLSLMA-NQLQGLIPKSLADLGNLQTLDLSANNLTGEIPEEFWNMSQLLD 315

Query: 123 LDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGK 182
           L L++N L G+ P  +  NN  LE L+L     SG + +  +K   L  LD+S N+  G 
Sbjct: 316 LVLANNHLSGSLPKSICSNNTNLEQLVLSGTQLSGEIPVELSKCQSLKQLDLSNNSLAGS 375

Query: 183 LPHNM-----------------GVI------LQKLMYMDISKNCFEGNIPYSAGEMKELS 219
           +P  +                 G +      L  L ++ +  N  EG +P     +++L 
Sbjct: 376 IPEALFELVELTDLYLHNNTLEGTLSPSISNLTNLQWLVLYHNNLEGKLPKEISALRKLE 435

Query: 220 LLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSG 279
           +L L  N FSG + Q +   C SL+++D+  N+FEG+       L  L  L+   N   G
Sbjct: 436 VLFLYENRFSGEIPQEI-GNCTSLKMIDMFGNHFEGEIPPSIGRLKELNLLHLRQNELVG 494

Query: 280 KIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLER 339
            +   L +   L +LD+++N LSG IP   G F   LE L +  N L+GN+P  L +L  
Sbjct: 495 GLPASLGNCHQLNILDLADNQLSGSIPSSFG-FLKGLEQLMLYNNSLQGNLPDSLISLRN 553

Query: 340 LRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSG 399
           L  +++S NRL+G I      SS     +  N     IP EL  S  L  L L  N  +G
Sbjct: 554 LTRINLSHNRLNGTIHPLCGSSSYLSFDVTNNGFEDEIPLELGNSQNLDRLRLGKNQLTG 613

Query: 400 RIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSW 459
           +IP  + +   L  L +  N L G IP QL   +KL  +DL+ N  SG IPP       W
Sbjct: 614 KIPWTLGKIRELSLLDMSSNALTGTIPLQLVLCKKLTHIDLNNNFLSGPIPP-------W 666

Query: 460 RVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEF 519
            +G    L   KL+S +  E +             +F   + L       +++  +  E 
Sbjct: 667 -LGKLSQLGELKLSSNQFVESL----------PTELFNCTKLLVLSLDGNSLNGSIPQEI 715

Query: 520 AMKNRYEIYN-------GS------NVNRVTGLDLSCNQLTGEIPSDIGQLQAIL-ALNL 565
                  + N       GS       ++++  L LS N LTGEIP +IGQLQ +  AL+L
Sbjct: 716 GNLGALNVLNLDKNQFSGSLPQAMGKLSKLYELRLSRNSLTGEIPVEIGQLQDLQSALDL 775

Query: 566 SNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPDK 625
           S N+ +G IP +   L  +E+LD+S+N+LTG++P  +  +  L   NVS+NNL G+   K
Sbjct: 776 SYNNFTGDIPSTIGTLSKLETLDLSHNQLTGEVPGSVGDMKSLGYLNVSFNNLGGKL--K 833

Query: 626 GQFATFDESSYRGNPSLCA 644
            QF+ +   S+ GN  LC 
Sbjct: 834 KQFSRWPADSFLGNTGLCG 852

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9ZWC8|BRL1_ARATH Serine/threonine-protein kinase BRI1-like 1 OS=Arabidopsis thaliana GN=BRL1 PE=1 SV=1

 Score =  239 bits (609), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 211/660 (31%), Positives = 319/660 (48%), Gaps = 52/660 (7%)

Query: 46  LEYLDLSHNNFEGMFPLSSLANH--SKLEGLLLSTRNNTLHVKTENWLPTS--QLIVLGL 101
           L+ LDLS N+        S+ ++  SK   L+    +N   V    + P+S   L  + L
Sbjct: 127 LQVLDLSSNSISDY----SMVDYVFSKCSNLVSVNISNNKLVGKLGFAPSSLQSLTTVDL 182

Query: 102 TKCNLNGSYPDFLLHQY--HLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSG-- 157
           +   L+   P+  +  +   LKYLDL+HN L G+F          L    L  N+ SG  
Sbjct: 183 SYNILSDKIPESFISDFPASLKYLDLTHNNLSGDFSDLSFGICGNLTFFSLSQNNLSGDK 242

Query: 158 -ILQLPKAKHDFLHHLDISCNNFRGKLPHN-MGVILQKLMYMDISKNCFEGNIPYSAGEM 215
             + LP  K  FL  L+IS NN  GK+P+       Q L  + ++ N   G IP     +
Sbjct: 243 FPITLPNCK--FLETLNISRNNLAGKIPNGEYWGSFQNLKQLSLAHNRLSGEIPPELSLL 300

Query: 216 -KELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMN-LTRLRHLYFE 273
            K L +LDLS N FSG L  S  T C  L+ L+L NN   G F +  ++ +T + +LY  
Sbjct: 301 CKTLVILDLSGNTFSGEL-PSQFTACVWLQNLNLGNNYLSGDFLNTVVSKITGITYLYVA 359

Query: 274 NNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSE--LEILSMSKNHLEGNVP 331
            NN SG +   L + ++L+VLD+S+N  +G++P    +  S   LE + ++ N+L G VP
Sbjct: 360 YNNISGSVPISLTNCSNLRVLDLSSNGFTGNVPSGFCSLQSSPVLEKILIANNYLSGTVP 419

Query: 332 VQLNNLERLRILDISENRLSGPIASSL-NLSSVEHLSLQKNALNGLIP-GELFRSCKLVT 389
           ++L   + L+ +D+S N L+GPI   +  L ++  L +  N L G IP G   +   L T
Sbjct: 420 MELGKCKSLKTIDLSFNELTGPIPKEIWMLPNLSDLVMWANNLTGTIPEGVCVKGGNLET 479

Query: 390 LNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSI 449
           L L +N  +G IP  I+  +N+ ++ L  N L G IP  +  L KLA++ L  N  SG++
Sbjct: 480 LILNNNLLTGSIPESISRCTNMIWISLSSNRLTGKIPSGIGNLSKLAILQLGNNSLSGNV 539

Query: 450 PPCFANV--LSWRVGSDDVLNGSKLNSPELDEEI--EFGSLGNNRSSNTMFGMWRWLSAL 505
           P    N   L W   + + L G      +L  E+  + G +     S   F   R     
Sbjct: 540 PRQLGNCKSLIWLDLNSNNLTG------DLPGELASQAGLVMPGSVSGKQFAFVRNEGGT 593

Query: 506 EKRAAIDERVEIEFAMKNRYE------------IYNGSNVNRVTG------LDLSCNQLT 547
           + R A    VE E     R E            IY+G  +   +        D+S N ++
Sbjct: 594 DCRGA-GGLVEFEGIRAERLERLPMVHSCPATRIYSGMTMYTFSANGSMIYFDISYNAVS 652

Query: 548 GEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNF 607
           G IP   G +  +  LNL +N ++G+IP+SF  LK I  LD+S+N L G +P  L +L+F
Sbjct: 653 GFIPPGYGNMGYLQVLNLGHNRITGTIPDSFGGLKAIGVLDLSHNNLQGYLPGSLGSLSF 712

Query: 608 LSIFNVSYNNLSGRTPDKGQFATFDESSYRGNPSLCAWLIQQKYSRTLKPTTTQASGAEE 667
           LS  +VS NNL+G  P  GQ  TF  S Y  N  LC   ++   S   +P T++    ++
Sbjct: 713 LSDLDVSNNNLTGPIPFGGQLTTFPVSRYANNSGLCGVPLRPCGSAPRRPITSRIHAKKQ 772

Receptor with a serine/threonine-protein kinase activity. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development. Binds brassinolide. May be involved in cell growth and vascular differentiation.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2

 Score =  233 bits (595), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 201/661 (30%), Positives = 319/661 (48%), Gaps = 74/661 (11%)

Query: 16  LKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLL 75
           + +L +L+ L ++SN L G +PS + NL++L +L L+HN   G  P +S+ N  +L   +
Sbjct: 202 IGDLKQLRNLSLASNNLIGEIPSSLGNLSNLVHLVLTHNQLVGEVP-ASIGNLIELR--V 258

Query: 76  LSTRNNTLHVKTE-NWLPTSQLIVLGLTKCNLNGSYPDFLLHQYH-LKYLDLSHNKLVGN 133
           +S  NN+L      ++   ++L +  L+  N   ++P F +  +H L+Y D+S+N   G 
Sbjct: 259 MSFENNSLSGNIPISFANLTKLSIFVLSSNNFTSTFP-FDMSIFHNLEYFDVSYNSFSGP 317

Query: 134 FPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDF-LHHLDISCNNFRGKLPHNMGVILQ 192
           FP  LL   P LE + L+ N F+G ++         L  L +  N   G +P ++  +L 
Sbjct: 318 FPKSLLLI-PSLESIYLQENQFTGPIEFANTSSSTKLQDLILGRNRLHGPIPESISRLLN 376

Query: 193 KLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGC-FSLELLDLSNN 251
            L  +DIS N F G IP +  ++  L  LDLS+N   G      V  C + L  + LS+N
Sbjct: 377 -LEELDISHNNFTGAIPPTISKLVNLLHLDLSKNNLEGE-----VPACLWRLNTMVLSHN 430

Query: 252 NFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGN 311
           +F   F +       +  L   +N+F G I   +   +SL  LD+SNN+ SG IP  + N
Sbjct: 431 SF-SSFENTSQEEALIEELDLNSNSFQGPIPYMICKLSSLGFLDLSNNLFSGSIPSCIRN 489

Query: 312 FSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSL-NLSSVEHLSLQK 370
           FS  ++ L++  N+  G +P   +    L  LD+S N+L G    SL N  ++E ++++ 
Sbjct: 490 FSGSIKELNLGDNNFSGTLPDIFSKATELVSLDVSHNQLEGKFPKSLINCKALELVNVES 549

Query: 371 NALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLC 430
           N +  + P  L     L  LNLR N F G + H+   H+++ F                 
Sbjct: 550 NKIKDIFPSWLESLPSLHVLNLRSNKFYGPLYHR---HASIGF----------------- 589

Query: 431 QLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNR 490
             Q L ++D+S N FSG++PP + +  +W+            +   L EE++        
Sbjct: 590 --QSLRIIDISHNNFSGTLPPYYFS--NWK------------DMTTLTEEMD-------- 625

Query: 491 SSNTMFGMWRWL-SALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGE 549
               M   WR+  S   +   +++ V++ F    R              +D S N++ G 
Sbjct: 626 --QYMTEFWRYADSYYHEMEMVNKGVDMSFERIRR----------DFRAIDFSGNKINGN 673

Query: 550 IPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLS 609
           IP  +G L+ +  LNLS N+ +  IP   +NL  +E+LDIS NKL+GQIP  L AL+FLS
Sbjct: 674 IPESLGYLKELRVLNLSGNAFTSVIPRFLANLTKLETLDISRNKLSGQIPQDLAALSFLS 733

Query: 610 IFNVSYNNLSGRTPDKGQFATFDESSYRGNPSLCAWLIQQKYSRTLKPTTTQASGAEEEE 669
             N S+N L G  P   QF     SS+  NP L       + +  L PT+       E E
Sbjct: 734 YMNFSHNLLQGPVPRGTQFQRQKCSSFLDNPGLYGLEDICRDTGALNPTSQLPEDLSEAE 793

Query: 670 E 670
           E
Sbjct: 794 E 794

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LJF3|BRL3_ARATH Receptor-like protein kinase BRI1-like 3 OS=Arabidopsis thaliana GN=BRL3 PE=1 SV=1

 Score =  230 bits (586), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 217/672 (32%), Positives = 327/672 (48%), Gaps = 62/672 (9%)

Query: 22  LKILDISSNQLNGS--LPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTR 79
           L++LD+SSN L  S  +  V S   +L  ++ SHN   G    S  A++ ++  + LS  
Sbjct: 126 LEVLDLSSNSLTDSSIVDYVFSTCLNLVSVNFSHNKLAGKLKSSPSASNKRITTVDLS-- 183

Query: 80  NNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLL 139
           NN    +  + +P + +             +P+       LK+LDLS N + G+F     
Sbjct: 184 NN----RFSDEIPETFI-----------ADFPN------SLKHLDLSGNNVTGDFSRLSF 222

Query: 140 RNNPKLEVLLLKNNSFSG-ILQLPKAKHDFLHHLDISCNNFRGKLP-HNMGVILQKLMYM 197
                L V  L  NS SG    +  +    L  L++S N+  GK+P  +     Q L  +
Sbjct: 223 GLCENLTVFSLSQNSISGDRFPVSLSNCKLLETLNLSRNSLIGKIPGDDYWGNFQNLRQL 282

Query: 198 DISKNCFEGNIPYSAGEM-KELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQ 256
            ++ N + G IP     + + L +LDLS N  +G L QS  T C SL+ L+L NN   G 
Sbjct: 283 SLAHNLYSGEIPPELSLLCRTLEVLDLSGNSLTGQLPQSF-TSCGSLQSLNLGNNKLSGD 341

Query: 257 FFSEYMN-LTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNF--S 313
           F S  ++ L+R+ +LY   NN SG +   L + ++L+VLD+S+N  +G +P    +   S
Sbjct: 342 FLSTVVSKLSRITNLYLPFNNISGSVPISLTNCSNLRVLDLSSNEFTGEVPSGFCSLQSS 401

Query: 314 SELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSL-NLSSVEHLSLQKNA 372
           S LE L ++ N+L G VPV+L   + L+ +D+S N L+G I   +  L  +  L +  N 
Sbjct: 402 SVLEKLLIANNYLSGTVPVELGKCKSLKTIDLSFNALTGLIPKEIWTLPKLSDLVMWANN 461

Query: 373 LNGLIPGEL-FRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQ 431
           L G IP  +      L TL L +N  +G +P  I++ +N+ ++ L  N L G IP  + +
Sbjct: 462 LTGGIPESICVDGGNLETLILNNNLLTGSLPESISKCTNMLWISLSSNLLTGEIPVGIGK 521

Query: 432 LQKLAMMDLSRNKFSGSIPPCFANV--LSWRVGSDDVLNGSKLNSP-ELDEEIEFGSLGN 488
           L+KLA++ L  N  +G+IP    N   L W   + + L G   N P EL  +   G +  
Sbjct: 522 LEKLAILQLGNNSLTGNIPSELGNCKNLIWLDLNSNNLTG---NLPGELASQA--GLVMP 576

Query: 489 NRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYE------------IYNG------ 530
              S   F   R     + R A    VE E     R E            IY+G      
Sbjct: 577 GSVSGKQFAFVRNEGGTDCRGA-GGLVEFEGIRAERLEHFPMVHSCPKTRIYSGMTMYMF 635

Query: 531 SNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDIS 590
           S+   +  LDLS N ++G IP   G +  +  LNL +N L+G+IP+SF  LK I  LD+S
Sbjct: 636 SSNGSMIYLDLSYNAVSGSIPLGYGAMGYLQVLNLGHNLLTGTIPDSFGGLKAIGVLDLS 695

Query: 591 YNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPDKGQFATFDESSYRGNPSLCAWLIQQK 650
           +N L G +P  L  L+FLS  +VS NNL+G  P  GQ  TF  + Y  N  LC   +   
Sbjct: 696 HNDLQGFLPGSLGGLSFLSDLDVSNNNLTGPIPFGGQLTTFPLTRYANNSGLCGVPLPPC 755

Query: 651 YSRTLKPTTTQA 662
            S + +PT + A
Sbjct: 756 SSGS-RPTRSHA 766

Receptor with a dual specificity kinase activity acting on both serine/threonine- and tyrosine-containing substrates. Binds brassinolide. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development. May be involved in cell growth and vascular differentiation.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FZ59|PEPR2_ARATH Leucine-rich repeat receptor-like protein kinase PEPR2 OS=Arabidopsis thaliana GN=PEPR2 PE=1 SV=1

 Score =  224 bits (572), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 214/703 (30%), Positives = 326/703 (46%), Gaps = 119/703 (16%)

Query: 1   MNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMF 60
           +NL  + +   L + +  L  L  LD+S N  +G LPS + N TSLEYLDLS+N+F G  
Sbjct: 81  LNLSASGLSGQLGSEIGELKSLVTLDLSLNSFSGLLPSTLGNCTSLEYLDLSNNDFSGEV 140

Query: 61  P--LSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQY 118
           P    SL N +     L   RNN   +   +     +L+ L ++  NL+G+ P+ L +  
Sbjct: 141 PDIFGSLQNLT----FLYLDRNNLSGLIPASVGGLIELVDLRMSYNNLSGTIPELLGNCS 196

Query: 119 HLKYLDLSHNKLVGNFPT--WLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISC 176
            L+YL L++NKL G+ P   +LL N   L  L + NNS  G L    +    L  LD+S 
Sbjct: 197 KLEYLALNNNKLNGSLPASLYLLEN---LGELFVSNNSLGGRLHFGSSNCKKLVSLDLSF 253

Query: 177 NNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSV 236
           N+F+G +P  +G     L  + + K    G IP S G ++++S++DLS N  SG + Q +
Sbjct: 254 NDFQGGVPPEIGNC-SSLHSLVMVKCNLTGTIPSSMGMLRKVSVIDLSDNRLSGNIPQEL 312

Query: 237 VTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDI 296
              C SLE L L++N  +G+       L +L+ L    N  SG+I  G+    SL  + +
Sbjct: 313 -GNCSSLETLKLNDNQLQGEIPPALSKLKKLQSLELFFNKLSGEIPIGIWKIQSLTQMLV 371

Query: 297 SNNMLSGHIP-----------------HWMGN------FSSELEILSMSKNHLEGNVPVQ 333
            NN L+G +P                  + G+       +  LE + +  N   G +P  
Sbjct: 372 YNNTLTGELPVEVTQLKHLKKLTLFNNGFYGDIPMSLGLNRSLEEVDLLGNRFTGEIPPH 431

Query: 334 LNNLERLRILDISENRLSGPIASSL-NLSSVEHLSLQKNALNGLIP-------------- 378
           L + ++LR+  +  N+L G I +S+    ++E + L+ N L+G++P              
Sbjct: 432 LCHGQKLRLFILGSNQLHGKIPASIRQCKTLERVRLEDNKLSGVLPEFPESLSLSYVNLG 491

Query: 379 -----GELFRS---CK-LVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQL 429
                G + RS   CK L+T++L  N  +G IP ++    +L  L L  N+L+GP+P QL
Sbjct: 492 SNSFEGSIPRSLGSCKNLLTIDLSQNKLTGLIPPELGNLQSLGLLNLSHNYLEGPLPSQL 551

Query: 430 CQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNN 489
               +L   D+  N  +GSIP  F    SW+  S  VL+ +           E   L + 
Sbjct: 552 SGCARLLYFDVGSNSLNGSIPSSFR---SWKSLSTLVLSDNNFLGAIPQFLAELDRLSDL 608

Query: 490 RSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGE 549
           R +   FG             I   V +  ++  RY            GLDLS N  TGE
Sbjct: 609 RIARNAFG-----------GKIPSSVGLLKSL--RY------------GLDLSANVFTGE 643

Query: 550 IPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLS 609
           IP+ +G L  +  LN+SNN L+G +     +LK +  +D+SYN+ TG IP     +N LS
Sbjct: 644 IPTTLGALINLERLNISNNKLTGPL-SVLQSLKSLNQVDVSYNQFTGPIP-----VNLLS 697

Query: 610 IFNVSYNNLSGRTPDKGQFATFDESSYRGNPSLCAWLIQQKYS 652
                                 + S + GNP LC   IQ  YS
Sbjct: 698 ----------------------NSSKFSGNPDLC---IQASYS 715

Acts as a receptor for PEP defense peptides. Unlike typical immune receptors, senses an endogenous elicitor that potentiates PAMP-inducible plant responses.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2

 Score =  224 bits (572), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 218/759 (28%), Positives = 334/759 (44%), Gaps = 117/759 (15%)

Query: 6   NFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSL 65
           N +   + + L +L  LK L +  N+LNG++P    NL +L+ L L+     G+ P S  
Sbjct: 130 NLLSGDIPSQLGSLVNLKSLKLGDNELNGTIPETFGNLVNLQMLALASCRLTGLIP-SRF 188

Query: 66  ANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDL 125
               +L+ L+L        +  E    TS L +       LNGS P  L    +L+ L+L
Sbjct: 189 GRLVQLQTLILQDNELEGPIPAEIGNCTS-LALFAAAFNRLNGSLPAELNRLKNLQTLNL 247

Query: 126 SHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPH 185
             N   G  P+ L  +   ++ L L  N   G++     +   L  LD+S NN  G + H
Sbjct: 248 GDNSFSGEIPSQL-GDLVSIQYLNLIGNQLQGLIPKRLTELANLQTLDLSSNNLTGVI-H 305

Query: 186 NMGVILQKLMYMDISKNCFEGNIPYS-AGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLE 244
                + +L ++ ++KN   G++P +       L  L LS    SG +   + + C SL+
Sbjct: 306 EEFWRMNQLEFLVLAKNRLSGSLPKTICSNNTSLKQLFLSETQLSGEIPAEI-SNCQSLK 364

Query: 245 LLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGH 304
           LLDLSNN   GQ       L  L +LY  NN+  G +   + + T+LQ   + +N L G 
Sbjct: 365 LLDLSNNTLTGQIPDSLFQLVELTNLYLNNNSLEGTLSSSISNLTNLQEFTLYHNNLEGK 424

Query: 305 IPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLN-LSSV 363
           +P  +G F  +LEI+ + +N   G +PV++ N  RL+ +D   NRLSG I SS+  L  +
Sbjct: 425 VPKEIG-FLGKLEIMYLYENRFSGEMPVEIGNCTRLQEIDWYGNRLSGEIPSSIGRLKDL 483

Query: 364 EHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQG 423
             L L++N L G IP  L    ++  ++L DN  SG IP      + L   ++  N LQG
Sbjct: 484 TRLHLRENELVGNIPASLGNCHQMTVIDLADNQLSGSIPSSFGFLTALELFMIYNNSLQG 543

Query: 424 PIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSP-ELDEEIE 482
            +PD L  L+ L  ++ S NKF+GSI P   +  S  +  D   NG + + P EL +   
Sbjct: 544 NLPDSLINLKNLTRINFSSNKFNGSISPLCGS--SSYLSFDVTENGFEGDIPLELGKSTN 601

Query: 483 FGSL--GNNRSSNTM---FGMWRWLSALE-KRAAIDERVEIEFAM--------------- 521
              L  G N+ +  +   FG    LS L+  R ++   + +E  +               
Sbjct: 602 LDRLRLGKNQFTGRIPRTFGKISELSLLDISRNSLSGIIPVELGLCKKLTHIDLNNNYLS 661

Query: 522 -------------------KNRY------EIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQ 556
                               N++      EI++ +N+     L L  N L G IP +IG 
Sbjct: 662 GVIPTWLGKLPLLGELKLSSNKFVGSLPTEIFSLTNI---LTLFLDGNSLNGSIPQEIGN 718

Query: 557 LQAILALNLSNNSLS--------------------------------------------- 571
           LQA+ ALNL  N LS                                             
Sbjct: 719 LQALNALNLEENQLSGPLPSTIGKLSKLFELRLSRNALTGEIPVEIGQLQDLQSALDLSY 778

Query: 572 ----GSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPDKGQ 627
               G IP + S L  +ESLD+S+N+L G++P Q+  +  L   N+SYNNL G+   K Q
Sbjct: 779 NNFTGRIPSTISTLPKLESLDLSHNQLVGEVPGQIGDMKSLGYLNLSYNNLEGKL--KKQ 836

Query: 628 FATFDESSYRGNPSLCAWLIQQ------KYSRTLKPTTT 660
           F+ +   ++ GN  LC   +        K  R+L P T 
Sbjct: 837 FSRWQADAFVGNAGLCGSPLSHCNRAGSKNQRSLSPKTV 875

Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O22476|BRI1_ARATH Protein BRASSINOSTEROID INSENSITIVE 1 OS=Arabidopsis thaliana GN=BRI1 PE=1 SV=1

 Score =  224 bits (570), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 216/672 (32%), Positives = 322/672 (47%), Gaps = 65/672 (9%)

Query: 27  ISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGL-LLSTRNNTLHV 85
           +S++ +NGS+ S      SL  LDLS N+  G  P+++L +     GL  L+  +NTL  
Sbjct: 106 LSNSHINGSV-SGFKCSASLTSLDLSRNSLSG--PVTTLTSLGSCSGLKFLNVSSNTLDF 162

Query: 86  --KTENWLPTSQLIVLGLTKCNLNGS-YPDFLLHQY--HLKYLDLSHNKLVGNFPTWLLR 140
             K    L  + L VL L+  +++G+    ++L      LK+L +S NK+ G+       
Sbjct: 163 PGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCV 222

Query: 141 NNPKLEVLLLKNNSFS-GILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDI 199
           N   LE L + +N+FS GI  L       L HLDIS N   G     +    + L  ++I
Sbjct: 223 N---LEFLDVSSNNFSTGIPFLGDCSA--LQHLDISGNKLSGDFSRAISTCTE-LKLLNI 276

Query: 200 SKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFS 259
           S N F G IP     +K L  L L+ N F+G +   +   C +L  LDLS N+F G    
Sbjct: 277 SSNQFVGPIP--PLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPP 334

Query: 260 EYMNLTRLRHLYFENNNFSGKIK-DGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEI 318
            + + + L  L   +NNFSG++  D LL    L+VLD+S N  SG +P  + N S+ L  
Sbjct: 335 FFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLT 394

Query: 319 LSMSKNHLEG--------------------------NVPVQLNNLERLRILDISENRLSG 352
           L +S N+  G                           +P  L+N   L  L +S N LSG
Sbjct: 395 LDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSG 454

Query: 353 PIASSL-NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNL 411
            I SSL +LS +  L L  N L G IP EL     L TL L  N  +G IP  ++  +NL
Sbjct: 455 TIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNL 514

Query: 412 RFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLS--WRVGSDDVLNG 469
            ++ L  N L G IP  + +L+ LA++ LS N FSG+IP    +  S  W   + ++ NG
Sbjct: 515 NWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNG 574

Query: 470 SKLNSPELDEEIEFGS----------LGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEF 519
           + + +    +  +  +          + N+       G    L     R+    R+    
Sbjct: 575 T-IPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRN 633

Query: 520 AMKNRYEIYNG------SNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGS 573
                  +Y G       N   +  LD+S N L+G IP +IG +  +  LNL +N +SGS
Sbjct: 634 PCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGS 693

Query: 574 IPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPDKGQFATFDE 633
           IP+   +L+ +  LD+S NKL G+IP  ++AL  L+  ++S NNLSG  P+ GQF TF  
Sbjct: 694 IPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPP 753

Query: 634 SSYRGNPSLCAW 645
           + +  NP LC +
Sbjct: 754 AKFLNNPGLCGY 765

Receptor with a dual specificity kinase activity acting on both serine/threonine- and tyrosine-containing substrates. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development, including expression of light- and stress-regulated genes, promotion of cell elongation, normal leaf and chloroplast senescence, and flowering. Binds brassinolide, and less effectively castasterone, but not 2,3,22,23-O-tetramethylbrassinolide or ecdysone. May be involved in a feedback regulation of brassinosteroid biosynthesis. Phosphorylates BRI1-associated receptor kinase 1 (BAK1), Transthyretin-Like protein (TTL) and SERK1 on 'Ser-299' and 'Thr-462' in vitro. May have a guanylyl cyclase activity.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	735
358345471	933	Receptor kinase [Medicago truncatula] gi	0.968	0.763	0.470	1e-160
359482749	1067	PREDICTED: leucine-rich repeat receptor	0.963	0.663	0.448	1e-159
357468861	1016	Receptor-like protein kinase [Medicago t	0.918	0.664	0.455	1e-156
358345693	1011	Receptor-like protein kinase [Medicago t	0.918	0.667	0.455	1e-155
359482735	1097	PREDICTED: receptor-like protein 12-like	0.961	0.644	0.436	1e-154
359482745	1026	PREDICTED: leucine-rich repeat receptor	0.963	0.690	0.435	1e-153
255553269	2793	receptor-kinase, putative [Ricinus commu	0.897	0.236	0.475	1e-152
359483163	1047	PREDICTED: LRR receptor-like serine/thre	0.965	0.678	0.444	1e-152
358345705	703	Receptor protein kinase-like protein [Me	0.911	0.953	0.447	1e-151
357468869	703	Receptor protein kinase-like protein [Me	0.911	0.953	0.447	1e-151

>gi|358345471|ref|XP_003636801.1| Receptor kinase [Medicago truncatula] gi|355502736|gb|AES83939.1| Receptor kinase [Medicago truncatula]

 Score =  572 bits (1473), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 357/758 (47%), Positives = 461/758 (60%), Gaps = 46/758 (6%)

Query: 1   MNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMF 60
           ++L RN +      CL+NLT L++LD+SSN   G++PS I +L SLEYL L   NF+G+F
Sbjct: 187 LDLSRNGMSGYFPQCLRNLTSLRVLDLSSNNFVGNIPSFIISLKSLEYLSLFDTNFDGIF 246

Query: 61  PLSSLANHSKLEGLLLSTRNNTLHVKTE---NWLPTSQLIVLGLTKCNLN----GSYPDF 113
             SSL NHSKLE  LLS + N L+V+TE   +W PT QL VL L  C LN    G++P F
Sbjct: 247 SFSSLNNHSKLEVFLLSPKTNNLYVETEESPSWHPTFQLKVLQLRNCFLNSKRDGTFPTF 306

Query: 114 LLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLD 173
           LL+Q+ L+ LDLSHNKL GNFP+W+L NN KLE L L NNSF+G L+LP  KH  L  L 
Sbjct: 307 LLYQHELQLLDLSHNKLSGNFPSWILENNTKLETLYLMNNSFTGTLELPTFKHGLLD-LQ 365

Query: 174 ISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLS 233
           IS N   G+L  ++G I   L Y+++SKN FEG +P S GEM+ +  LDLS N FSG LS
Sbjct: 366 ISNNKIGGQLQEDIGKIFPNLYYVNLSKNSFEGILPSSIGEMQTIRTLDLSNNNFSGELS 425

Query: 234 QSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQV 293
             +++   SL LL LS+N+F G       NLTRL  LY  NN+FSG I+DG+ +++SL  
Sbjct: 426 SHLISNLTSLRLLRLSHNSFHG-LVPLLSNLTRLNWLYLNNNSFSGVIEDGVSNNSSLFS 484

Query: 294 LDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGP 353
           LDISNNMLSG IP W+G F+ +L +LS+SKN L+G +P +L NL  L  LD+SEN LS  
Sbjct: 485 LDISNNMLSGRIPRWIGRFT-KLSVLSLSKNRLQGEIPNELCNLISLSYLDLSENNLSDF 543

Query: 354 IASSL-NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLR 412
           +     N   ++ L LQKNAL G IP    +  KL +L+LRDN F G IP  IN  S LR
Sbjct: 544 LPYCFKNFKYMKFLYLQKNALQGNIPYAFSQLTKLTSLDLRDNNFFGNIPQWINRLSKLR 603

Query: 413 FLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKL 472
            LLL GN L GPIP  +C+L+ + +MDLS N  + +IPPC  N+    V       G + 
Sbjct: 604 VLLLAGNKLTGPIPIYVCELEHVRIMDLSHNWINETIPPCIKNISFKMVEFQTTAVGGRA 663

Query: 473 NSPELDEEIEFGSLGNNRSSNTMFGMWRWL-----------SALEKRAAID-------ER 514
              + D + +    GN  +S        W            S+L     I        E 
Sbjct: 664 VQNDNDSKDKIQYYGNTATSYIFLVDDIWFTPGNTFDIFYNSSLSLNHPIADEYMISYEI 723

Query: 515 VEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSI 574
           VEIEF  K+ Y  Y G+N+N +TGLDLS N L+G IP +IG+L+ I ALNLS+N  SGSI
Sbjct: 724 VEIEFRTKSYYLSYKGNNLNLMTGLDLSSNNLSGSIPPEIGELRDIKALNLSHNRFSGSI 783

Query: 575 PESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPDKGQFATFDES 634
           P +F NL  IESLD+SYN L+G +P  LT L  L+IFNVSYN  SGR P   QFA FDE+
Sbjct: 784 PGTFPNLINIESLDLSYNNLSGALPQNLTNLYSLAIFNVSYNKFSGRVPTTMQFANFDEN 843

Query: 635 SYRGNPSLCAWLIQQKYSRT--LKPTTTQASGAEEEEEEEDDDESAIDMVTLYSSFGASY 692
           +YRGN  LC  +I    + T    P +T               ++AIDM + Y S  ASY
Sbjct: 844 NYRGNSDLCGSVINITCNHTSIFPPASTT------------QHQTAIDMESFYWSCVASY 891

Query: 693 VTVILVLIAILWINSYWRRLWFYSIDRCINTWYYWLSK 730
           VTV++ L  ILW+NS+W R+WF  +D CI   +Y  S+
Sbjct: 892 VTVVIGLAVILWVNSHWCRVWFRYVDLCI---FYCFSR 926

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482749|ref|XP_002262614.2| PREDICTED: leucine-rich repeat receptor protein kinase EXS-like [Vitis vinifera]

 Score =  569 bits (1467), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 329/733 (44%), Positives = 460/733 (62%), Gaps = 25/733 (3%)

Query: 1    MNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPS-VISNLTSLEYLDLSHNNFEGM 59
            ++L  N     L  CL NLT L++LD+SSN L+G+L S ++ NLTSLEY+DLS+N+FEG 
Sbjct: 342  LDLSYNLFQGTLPPCLNNLTSLRLLDLSSNHLSGNLSSPLLPNLTSLEYIDLSYNHFEGS 401

Query: 60   FPLSSLANHSKLEGLLLSTRNNTLHVKTE---NWLPTSQLIVLGLTKCNLNGSYPDFLLH 116
            F  SS ANHSKL+ ++L + NN   V+TE    W+P  QL  L L+ C L G  PDFL +
Sbjct: 402  FSFSSFANHSKLQVVILGSDNNKFEVETEYPVGWVPLFQLKALFLSNCKLTGDIPDFLQY 461

Query: 117  QYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISC 176
            Q+ L+ +DLSHN L G F  WLL NN +LE L+L+NNS  G L LP   +  +  LDIS 
Sbjct: 462  QFKLEVVDLSHNNLTGRFTNWLLENNTRLEFLVLRNNSLMGQL-LPLRPNTRILSLDISH 520

Query: 177  NNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSV 236
            N   G+L  N+G ++  ++++++S N FEG +P S  EM  L +LDLS N FSG + + +
Sbjct: 521  NQLDGRLQENVGHMIPNIVFLNLSNNGFEGLLPSSIAEMSSLRVLDLSANNFSGEVPKQL 580

Query: 237  VTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDI 296
            +     L +L LS N F G+ FS   N+T L  LY +NN F G + + +  S+ L VLD+
Sbjct: 581  L-ATKDLVILKLSYNKFHGEIFSRDFNMTGLDILYLDNNQFMGTLSNVISGSSQLMVLDV 639

Query: 297  SNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIAS 356
            SNN +SG IP  +GN + EL  L M  N+  G +P +++ L++++ LD+S+N LSG + S
Sbjct: 640  SNNYMSGEIPSGIGNMT-ELRTLVMGNNNFRGKLPPEISQLQQMKFLDVSQNALSGSLPS 698

Query: 357  SLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLL 416
              ++  +EHL LQ N   GLIP +   S  L+TL++RDN   G IP+ I+    LR LLL
Sbjct: 699  LKSMEYLEHLHLQGNMFTGLIPRDFLNSSDLLTLDMRDNRLFGSIPNSISALLELRILLL 758

Query: 417  GGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPE 476
             GN   G IP+ LC L K+++MDLS N FSG IP CF ++   R G        K  +  
Sbjct: 759  RGNLFSGFIPNHLCHLTKISLMDLSNNSFSGPIPKCFGDI---RFGE------MKKENDV 809

Query: 477  LDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRV 536
              + I+FG  G++R+    F + +W          DE+ E+EF  KNR++ Y+G  +N +
Sbjct: 810  FRQFIDFGYGGDSRNLYVGFTVKKWEF---DSDVYDEKNEVEFVTKNRHDSYSGDILNFM 866

Query: 537  TGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTG 596
             GLDLSCN LTGEIP  +G+L  I ALNLS+N L  SIP+SFSNL  IESLD+SYNKL+G
Sbjct: 867  FGLDLSCNNLTGEIPHKLGKLSWIHALNLSHNQLKDSIPKSFSNLSQIESLDLSYNKLSG 926

Query: 597  QIPPQLTALNFLSIFNVSYNNLSGRTPD-KGQFATFDESSYRGNPSLCAWLIQQKYSRTL 655
            +IP +L  LNFL +F+V+YNN+SGR PD K QF TFDE SY GNP LC  L+++K + ++
Sbjct: 927  EIPLELVELNFLEVFSVAYNNISGRVPDTKAQFGTFDERSYEGNPFLCGTLLKRKCNTSI 986

Query: 656  KPTTTQASGAEEEEEEEDDDESAIDMVTLYSSFGASYVTVILVLIAILWINSYWRRLWFY 715
            +P    +   E E +  D     I+ V  ++SF  SY+ ++L  + IL+IN YWR  WF 
Sbjct: 987  EPPCAPSQSFESEAKWYD-----INHVVFFASFTTSYIMILLGFVTILYINPYWRHRWFN 1041

Query: 716  SIDRCINTWYYWL 728
             I+ CI + YY++
Sbjct: 1042 FIEECIYSCYYFV 1054

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357468861|ref|XP_003604715.1| Receptor-like protein kinase [Medicago truncatula] gi|355505770|gb|AES86912.1| Receptor-like protein kinase [Medicago truncatula]

 Score =  557 bits (1435), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 335/736 (45%), Positives = 456/736 (61%), Gaps = 61/736 (8%)

Query: 1   MNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMF 60
           +++ +N   + L  CL NLT L++L++S+N  +G+ PS ISNLTSL YL    N  +G F
Sbjct: 278 LDISKNMFSAKLPDCLSNLTNLRVLELSNNLFSGNFPSFISNLTSLAYLSFYGNYMQGSF 337

Query: 61  PLSSLANHSKLEGLLLSTRNNT-LHVKTEN--WLPTSQLIVLGLTKCNLN---GSY-PDF 113
            LS+LANHS LE L +S++NN  + ++TE   W P  QL  L +  CNLN   GS  P F
Sbjct: 338 SLSTLANHSNLEVLYISSKNNIGVDIETEKTKWFPKFQLKSLIVRNCNLNKDEGSVIPTF 397

Query: 114 LLHQYHLKYLDLSHNKLVGNFPT-WLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHL 172
           L +QY+L YL LS N + G+ P+ WL+ N                         D + +L
Sbjct: 398 LSYQYNLVYLVLSSNNINGSLPSNWLIHN-------------------------DDMIYL 432

Query: 173 DISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGL 232
           DIS NN  G LP ++G+ L  + Y++ S N FEGNIP S G+MK+L LLD S+N+FSG L
Sbjct: 433 DISNNNLSGLLPKDIGIFLPNVTYLNFSWNSFEGNIPSSIGKMKQLQLLDFSQNHFSGEL 492

Query: 233 SQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQ 292
            + + TGC +L+ L LSNN   G     + N   +  L+  NNNFSG ++D L ++T L+
Sbjct: 493 PKQLATGCDNLQYLKLSNNFLHGNI-PRFCNSVNMFGLFLNNNNFSGTLEDVLGNNTRLE 551

Query: 293 VLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSG 352
            L ISNN  SG IP  +G FS+   +L MSKN LEG +P++++++ RL+ILD+S+N+L+G
Sbjct: 552 TLSISNNSFSGTIPSSIGMFSNMWALL-MSKNQLEGEIPIEISSIWRLQILDLSQNKLNG 610

Query: 353 PIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLR 412
            I     L+ +  L LQ+N L+G IP EL+   +L  L+LR+N FSG+IP+ +++ S LR
Sbjct: 611 SIPPLSGLTLLRFLYLQENGLSGSIPYELYEGFQLQLLDLRENKFSGKIPNWMDKFSELR 670

Query: 413 FLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVL-SWRVGSDDVLNGSK 471
            LLLGGN+ +G IP QLC+L+K+ +MDLSRN  + SIP CF N+L   R   D V + S 
Sbjct: 671 VLLLGGNNFEGEIPMQLCRLKKINIMDLSRNMLNASIPSCFRNMLFGMRQYVDAVFDLSS 730

Query: 472 LNSPELDEEIEFGSLGNNRSSNTMFGMWRWLS---ALEKRAAIDE--RVEIEFAMKNRYE 526
           +             L      +T +     LS    LEK   I++   +E+EF  K+   
Sbjct: 731 I-------------LYGQHIQDTHYFFDSSLSIDLPLEKDQLIEDLLHLEVEFRTKHYEY 777

Query: 527 IYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIES 586
            Y G  +  +TGLDLSCN+LTG IPS IG LQ I ALNLS+N LSG IP +FSNL  IES
Sbjct: 778 FYKGKVLENMTGLDLSCNKLTGVIPSQIGDLQQIRALNLSHNHLSGPIPITFSNLTQIES 837

Query: 587 LDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPDKGQFATFDESSYRGNPSLCAWL 646
           LD+SYN L+G+IP +LT LNFLS FNVSYNNLSG  P  GQFA FDE +YRGNPSLC  L
Sbjct: 838 LDLSYNDLSGKIPNELTQLNFLSTFNVSYNNLSGTPPSIGQFANFDEDNYRGNPSLCGPL 897

Query: 647 IQQKYSRTLKPTTTQASGAEEEEEEEDDDESAIDMVTLYSSFGASYVTVILVLIAILWIN 706
           + +K  R   P ++Q++  EEE       E+ +DM+T Y SF ASY+T++L  I +L IN
Sbjct: 898 LSRKCERVEPPPSSQSNDNEEE-------ETGVDMITFYWSFTASYITILLAFITVLCIN 950

Query: 707 SYWRRLWFYSIDRCIN 722
             WR  WFY I + +N
Sbjct: 951 PRWRMAWFYYISKFMN 966

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358345693|ref|XP_003636910.1| Receptor-like protein kinase [Medicago truncatula] gi|355502845|gb|AES84048.1| Receptor-like protein kinase [Medicago truncatula]

 Score =  556 bits (1434), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 335/736 (45%), Positives = 456/736 (61%), Gaps = 61/736 (8%)

Query: 1   MNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMF 60
           +++ +N   + L  CL NLT L++L++S+N  +G+ PS ISNLTSL YL    N  +G F
Sbjct: 278 LDISKNMFSAKLPDCLSNLTNLRVLELSNNLFSGNFPSFISNLTSLAYLSFYGNYMQGSF 337

Query: 61  PLSSLANHSKLEGLLLSTRNNT-LHVKTEN--WLPTSQLIVLGLTKCNLN---GSY-PDF 113
            LS+LANHS LE L +S++NN  + ++TE   W P  QL  L +  CNLN   GS  P F
Sbjct: 338 SLSTLANHSNLEVLYISSKNNIGVDIETEKTKWFPKFQLKSLIVRNCNLNKDEGSVIPTF 397

Query: 114 LLHQYHLKYLDLSHNKLVGNFPT-WLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHL 172
           L +QY+L YL LS N + G+ P+ WL+ N                         D + +L
Sbjct: 398 LSYQYNLVYLVLSSNNINGSLPSNWLIHN-------------------------DDMIYL 432

Query: 173 DISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGL 232
           DIS NN  G LP ++G+ L  + Y++ S N FEGNIP S G+MK+L LLD S+N+FSG L
Sbjct: 433 DISNNNLSGLLPKDIGIFLPNVTYLNFSWNSFEGNIPSSIGKMKQLQLLDFSQNHFSGEL 492

Query: 233 SQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQ 292
            + + TGC +L+ L LSNN   G     + N   +  L+  NNNFSG ++D L ++T L+
Sbjct: 493 PKQLATGCDNLQYLKLSNNFLHGNI-PRFCNSVNMFGLFLNNNNFSGTLEDVLGNNTRLE 551

Query: 293 VLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSG 352
            L ISNN  SG IP  +G FS+   +L MSKN LEG +P++++++ RL+ILD+S+N+L+G
Sbjct: 552 TLSISNNSFSGTIPSSIGMFSNMWALL-MSKNQLEGEIPIEISSIWRLQILDLSQNKLNG 610

Query: 353 PIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLR 412
            I     L+ +  L LQ+N L+G IP EL+   +L  L+LR+N FSG+IP+ +++ S LR
Sbjct: 611 SIPPLSGLTLLRFLYLQENGLSGSIPYELYEGFQLQLLDLRENKFSGKIPNWMDKFSELR 670

Query: 413 FLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVL-SWRVGSDDVLNGSK 471
            LLLGGN+ +G IP QLC+L+K+ +MDLSRN  + SIP CF N+L   R   D V + S 
Sbjct: 671 VLLLGGNNFEGEIPMQLCRLKKINIMDLSRNMLNASIPSCFRNMLFGMRQYVDAVFDLSS 730

Query: 472 LNSPELDEEIEFGSLGNNRSSNTMFGMWRWLS---ALEKRAAIDE--RVEIEFAMKNRYE 526
           +             L      +T +     LS    LEK   I++   +E+EF  K+   
Sbjct: 731 I-------------LYGQHIQDTHYFFDSSLSIDLPLEKDQLIEDLLHLEVEFRTKHYEY 777

Query: 527 IYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIES 586
            Y G  +  +TGLDLSCN+LTG IPS IG LQ I ALNLS+N LSG IP +FSNL  IES
Sbjct: 778 FYKGKVLENMTGLDLSCNKLTGVIPSQIGDLQQIRALNLSHNHLSGPIPITFSNLTQIES 837

Query: 587 LDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPDKGQFATFDESSYRGNPSLCAWL 646
           LD+SYN L+G+IP +LT LNFLS FNVSYNNLSG  P  GQFA FDE +YRGNPSLC  L
Sbjct: 838 LDLSYNDLSGKIPNELTQLNFLSTFNVSYNNLSGTPPSIGQFANFDEDNYRGNPSLCGPL 897

Query: 647 IQQKYSRTLKPTTTQASGAEEEEEEEDDDESAIDMVTLYSSFGASYVTVILVLIAILWIN 706
           + +K  R   P ++Q++  EEE       E+ +DM+T Y SF ASY+T++L  I +L IN
Sbjct: 898 LSRKCERVEPPPSSQSNDNEEE-------ETGVDMITFYWSFTASYITILLAFITVLCIN 950

Query: 707 SYWRRLWFYSIDRCIN 722
             WR  WFY I + +N
Sbjct: 951 PRWRMAWFYYISKFMN 966

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482735|ref|XP_003632821.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score =  551 bits (1419), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 324/743 (43%), Positives = 454/743 (61%), Gaps = 36/743 (4%)

Query: 1    MNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPS-VISNLTSLEYLDLSHNNFEGM 59
            ++L  N     L  CL N T L++LDIS+N  +G+L S ++ NLTSLEY+DLS+N FEG 
Sbjct: 363  LDLSYNLFQGILPPCLNNFTSLRLLDISANLFSGNLSSPLLPNLTSLEYIDLSYNQFEGS 422

Query: 60   FPLSSLANHSKLEGLLLSTRN----------NTLHVKTE---NWLPTSQLIVLGLTKCNL 106
            F  SS ANHSKL+ ++L   N              V+TE    W+P  QL VL L+ C L
Sbjct: 423  FSFSSFANHSKLQVVILGRDNIKFKEFGRDNKKFEVETEYPVGWVPLFQLKVLSLSSCKL 482

Query: 107  NGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKH 166
             G  P FL +Q+ L  +DLSHN L G+FP WLL NN +LE+LLL+NNS  G L LP   +
Sbjct: 483  TGDLPGFLQYQFRLVGVDLSHNNLTGSFPNWLLENNTRLEILLLRNNSLMGQL-LPLGPN 541

Query: 167  DFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRN 226
              ++ LDIS N   G+L  N+  ++  +  +++S N FEG IP S  E++ L +LDLS N
Sbjct: 542  TRINSLDISHNQLDGQLQENVAHMIPNITSLNLSNNGFEGIIPSSIAELRALQILDLSTN 601

Query: 227  YFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLL 286
             FSG + + ++     LE+L LSNN F G+ FS   NLT L  LY  NN F+G + + + 
Sbjct: 602  NFSGEVPKQLLAAK-DLEILKLSNNKFHGEIFSRDFNLTGLLCLYLGNNQFTGTLSNVIS 660

Query: 287  SSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDIS 346
              + L VLD+SNN +SG IP W+GN +  L  L M  N+ +G +P +++ L+R+  LD+S
Sbjct: 661  RISWLWVLDVSNNYMSGEIPSWIGNMTL-LRTLVMGNNNFKGKLPPEISQLQRMEFLDVS 719

Query: 347  ENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQIN 406
            +N LSG + S  ++  +EHL LQ N   GLIP +   S  L+TL++R+N   G IP+ I+
Sbjct: 720  QNALSGSLPSLKSMEYLEHLHLQGNMFTGLIPRDFLNSSNLLTLDIRENRLFGSIPNSIS 779

Query: 407  EHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDV 466
                LR LLL GN L G IP+ LC L ++++MDLS N FSG IP CF ++       +D 
Sbjct: 780  ALLKLRILLLRGNLLSGFIPNHLCHLTEISLMDLSNNSFSGPIPRCFGHIRFGETKKEDN 839

Query: 467  LNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYE 526
            + G  +   EL+ ++ +           +   W +LS        +E+ E+EF  KNR++
Sbjct: 840  VFGQFMYWYELNSDLVYAG--------YLVKHWEFLSP-----TYNEKDEVEFVTKNRHD 886

Query: 527  IYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIES 586
             Y G  +  ++GLDLSCN LTGEIP ++G L  I ALNLS+N L+GSIP+SFSNL  IES
Sbjct: 887  FYRGGILEFMSGLDLSCNNLTGEIPHELGMLSWIRALNLSHNQLNGSIPKSFSNLSQIES 946

Query: 587  LDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPD-KGQFATFDESSYRGNPSLCAW 645
            LD+SYNKL G+IP +L  LNFL +F+V+YNN SGR PD K QF TFDE SY GNP LC  
Sbjct: 947  LDLSYNKLGGEIPLELVELNFLEVFSVAYNNFSGRVPDTKAQFGTFDERSYEGNPFLCGE 1006

Query: 646  LIQQKYSRTLKPTTTQASGAEEEEEEEDDDESAIDMVTLYSSFGASYVTVILVLIAILWI 705
            L+++K + +++     +   E E +  D     I+ V  ++SF  SY+ ++L  + IL+I
Sbjct: 1007 LLKRKCNTSIESPCAPSQSFESEAKWYD-----INHVVFFASFTTSYIMILLGFVIILYI 1061

Query: 706  NSYWRRLWFYSIDRCINTWYYWL 728
            N YWR  WF  I+ CI + YY++
Sbjct: 1062 NPYWRHRWFNFIEECIYSCYYFV 1084

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482745|ref|XP_003632825.1| PREDICTED: leucine-rich repeat receptor protein kinase EXS-like [Vitis vinifera]

 Score =  550 bits (1417), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 320/734 (43%), Positives = 450/734 (61%), Gaps = 26/734 (3%)

Query: 1    MNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPS-VISNLTSLEYLDLSHNNFEGM 59
            ++L  N     L  CL NLT L++LD+S N  +G+L S ++ NLTSLEY+DLS+N FEG 
Sbjct: 300  LDLSYNLFQGILPPCLNNLTSLRLLDLSVNLFSGNLSSPLLPNLTSLEYIDLSYNQFEGS 359

Query: 60   FPLSSLANHSKLEGLLLSTRNNTLHVKTE---NWLPTSQLIVLGLTKCNLNGSYPDFLLH 116
            F  SS ANHSKL+ + L   NN   V+TE    W+P  QL  L L  C L G  P FL +
Sbjct: 360  FSFSSFANHSKLQMVKLGMNNNKFEVETEYPIGWVPLFQLKALSLDSCKLTGDLPSFLQY 419

Query: 117  QYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISC 176
            Q+ L  +DLSHN L G+FP WLL NN +L+ L+L+NNS  G L LP  ++  +H LDIS 
Sbjct: 420  QFRLVGVDLSHNNLTGSFPNWLLENNTRLKSLVLRNNSLMGQL-LPLERNTRIHSLDISH 478

Query: 177  NNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSV 236
            N   G+L  N+  ++  + Y+++S N FEG +P S  E++ L  LDLS N FSG + + +
Sbjct: 479  NQLDGQLQENVAHMIPNMKYLNLSDNGFEGILPSSIVELRALWYLDLSTNNFSGEVPKQL 538

Query: 237  VTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDI 296
            +     L +L LSNN F G+ FS   NL RL  LY  NN  +G + + +  S+ L VLD+
Sbjct: 539  LAAK-DLGVLKLSNNKFHGEIFSRDFNLIRLEVLYLGNNQLTGTLSNVISKSSWLGVLDV 597

Query: 297  SNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIAS 356
            SNN +SG IP  +GN +  L  L +  N  +G +P +++ L  L  LD+S+N LSG +  
Sbjct: 598  SNNYMSGEIPSQIGNMTY-LTTLVLGNNSFKGKLPPEISQLWGLEFLDVSQNALSGSLPC 656

Query: 357  SLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEH-SNLRFLL 415
               + S++HL LQ N   GLIP +   S  L+TL++RDN   G IP+ I+     LR  L
Sbjct: 657  LKTMESLKHLHLQGNMFTGLIPRDFLNSSHLLTLDMRDNRLFGSIPNSISALLKQLRIFL 716

Query: 416  LGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSP 475
            LGGN L G IP+ LC L ++++MDLS N FSG IP CF ++    +  +D + G  +   
Sbjct: 717  LGGNLLSGFIPNHLCHLTEISLMDLSNNSFSGPIPKCFGHIRFGEMKKEDNVFGQFI--- 773

Query: 476  ELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNR 535
                EI +G   +   +  +   W  LS++ K      + E+EF  KNR + Y G  +  
Sbjct: 774  ----EIRYGMDSHLVYAGYLVKYWEDLSSVYKG-----KDEVEFVTKNRRDFYRGGILEF 824

Query: 536  VTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLT 595
            ++GLDLSCN LTGEIP ++G L  I ALNLS+N L+GSIP+SFS+L  IESLD+SYNKL 
Sbjct: 825  MSGLDLSCNNLTGEIPHELGMLSWIRALNLSHNQLNGSIPKSFSDLSQIESLDLSYNKLG 884

Query: 596  GQIPPQLTALNFLSIFNVSYNNLSGRTPD-KGQFATFDESSYRGNPSLCAWLIQQKYSRT 654
            G+IP +L  LNFL++F+V+YNN+SGR P+ K QFATFDESSY GNP LC  L+++K + +
Sbjct: 885  GEIPLELVELNFLAVFSVAYNNISGRVPNAKAQFATFDESSYEGNPFLCGELLKRKCNTS 944

Query: 655  LKPTTTQASGAEEEEEEEDDDESAIDMVTLYSSFGASYVTVILVLIAILWINSYWRRLWF 714
            ++     +   E E +  D     I+ V  ++SF  SY+ ++L  + IL+IN YWR  WF
Sbjct: 945  IESPCAPSQSFESETKWYD-----INHVVFFASFTTSYIMILLGFVTILYINPYWRHRWF 999

Query: 715  YSIDRCINTWYYWL 728
              I+ C+ + YY++
Sbjct: 1000 NFIEECVYSCYYFV 1013

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255553269|ref|XP_002517677.1| receptor-kinase, putative [Ricinus communis] gi|223543309|gb|EEF44841.1| receptor-kinase, putative [Ricinus communis]

 Score =  547 bits (1409), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 336/707 (47%), Positives = 439/707 (62%), Gaps = 47/707 (6%)

Query: 1    MNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMF 60
            + L  N    PL  CL NLT L++LD++SN+ +G++ SV+S LTSL+YL LS N FEG+F
Sbjct: 1216 LGLSVNQFSGPLPQCLSNLTNLQVLDLTSNEFSGNIQSVVSKLTSLKYLFLSGNKFEGLF 1275

Query: 61   PLSSLANHSKLEGLLLSTRNNTLHVKTE--NWLPTSQLIVLGLTKCNLN---GSYPDFLL 115
              SSLANH KLE   LS+ +  L ++TE   W PT QL V+ L  CNLN      P FLL
Sbjct: 1276 SFSSLANHKKLEIFELSSGSTMLELETEIPVWFPTFQLKVIDLPNCNLNLRTRRIPSFLL 1335

Query: 116  HQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDIS 175
            +Q+ L+++DLSHN L+G FP+W+L+NN +LEV+ + NNSF+G  QLP  +H+ ++ L IS
Sbjct: 1336 YQHDLQFIDLSHNNLIGAFPSWILQNNSRLEVMNMMNNSFTGTFQLPSYRHELIN-LKIS 1394

Query: 176  CNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQS 235
             N+  G++P ++G++L  L Y+++S NCFEGNIP S  +M+ LS+LDLS NYFSG L +S
Sbjct: 1395 SNSIAGQIPKDIGLLLSNLRYLNMSWNCFEGNIPSSISQMEGLSILDLSNNYFSGELPRS 1454

Query: 236  VVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLD 295
            +++    L  L LSNNNF+G+ F E MNL  L  L   NNNFSGKI         L VLD
Sbjct: 1455 LLSNSTYLVALVLSNNNFQGRIFPETMNLEELTVLDMNNNNFSGKIDVDFFYCPRLSVLD 1514

Query: 296  ISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIA 355
            IS                         KN + G +P+QL NL  + ILD+SENR  G + 
Sbjct: 1515 IS-------------------------KNKVAGVIPIQLCNLSSVEILDLSENRFFGAMP 1549

Query: 356  SSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLL 415
            S  N SS+ +L LQKN LNGLIP  L RS  LV ++LR+N FSG IP  I++ S L  LL
Sbjct: 1550 SCFNASSLRYLFLQKNGLNGLIPHVLSRSSNLVVVDLRNNKFSGNIPSWISQLSELHVLL 1609

Query: 416  LGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSP 475
            LGGN L G IP+QLCQL+ L +MDLS N   GSIP CF N+ S+    ++  + S +   
Sbjct: 1610 LGGNALGGHIPNQLCQLRNLKIMDLSHNLLCGSIPSCFHNI-SFGSMVEESFSSSSIGVA 1668

Query: 476  ELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNR 535
                   +         + + G+  W S+ E        V++EF MK RY  Y GS +N 
Sbjct: 1669 MASHYDSYAYYKATLELD-LPGLLSWSSSSE--------VQVEFIMKYRYNSYKGSVINL 1719

Query: 536  VTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLT 595
            + G+DLS N+L GEIPS+IG +Q I +LNLS N LSGSIP SFSNLK +ESLD+  N L+
Sbjct: 1720 MAGIDLSRNELRGEIPSEIGDIQEIRSLNLSYNHLSGSIPFSFSNLKNLESLDLRNNSLS 1779

Query: 596  GQIPPQLTALNFLSIFNVSYNNLSGRTPDKGQFATFDESSYRGNPSLCAWLIQQKYSRTL 655
            G+IP QL  LNFL  F+VSYNNLSGR  +KGQF TFDESSY+GNP LC  LI +  +   
Sbjct: 1780 GEIPTQLVELNFLGTFDVSYNNLSGRILEKGQFGTFDESSYKGNPELCGDLIHRSCN--- 1836

Query: 656  KPTTTQASGAEEEEEEEDDDESAIDMVTLYSSFGASYVTVILVLIAI 702
               TT  S + + +EE   DE  IDM   Y SF ASYV    +  A+
Sbjct: 1837 TEATTPPSPSPDVDEE---DEGPIDMFWFYWSFCASYVIAFEMEFAM 1880

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359483163|ref|XP_002263908.2| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1-like [Vitis vinifera]

 Score =  544 bits (1401), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 326/733 (44%), Positives = 441/733 (60%), Gaps = 23/733 (3%)

Query: 1    MNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPS-VISNLTSLEYLDLSHNNFEGM 59
            ++L  N     L TCL NL  L+ LD+S NQ  GS+ S +ISNLTSLEY+ L +N+F G+
Sbjct: 316  LDLSWNRFDGMLPTCLSNLKSLRELDLSFNQFTGSVSSSLISNLTSLEYIHLGYNHFTGL 375

Query: 60   FPLSSLANHSKLEGLLLSTRNNTLHVKTE--NWLPTSQLIVLGLTKCNLN---GSYPDFL 114
            F  SS ANHSKLE + L + ++   V+TE   W+P  QL VL L++CNLN   G  P FL
Sbjct: 376  FSFSSFANHSKLEVVALPSNDDNFEVETEYTTWVPKFQLKVLVLSRCNLNKLTGDIPKFL 435

Query: 115  LHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDI 174
             HQ +L  +DLSHN L G+ P W+L NN +LE L L+NNSF+G   LP   +  L  +DI
Sbjct: 436  SHQAYLLQVDLSHNNLKGDLPNWMLENNRRLEYLDLRNNSFNGQFPLPSYPNMLLLSVDI 495

Query: 175  SCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQ 234
            S NNF G L  N G +L  L ++++++N FEG IP     +  L  LDLS N FSG +  
Sbjct: 496  SKNNFSGLLQENFGEMLPCLEWLNLAENAFEGQIPPLICNISSLWFLDLSSNNFSGEVPA 555

Query: 235  SVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVL 294
             +  GC +L +L LS+N F G  FS   NL  L+ L  +NN F+G +  GLL+ + L  L
Sbjct: 556  QLTVGCTNLYVLKLSDNRFHGPIFSTQFNLPLLQVLLLDNNQFTGTLS-GLLNCSWLTFL 614

Query: 295  DISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPI 354
            DI NN  SG IP WM   ++ L  L M  N   G +P +  +++    +D+S N  +G +
Sbjct: 615  DIRNNYFSGEIPKWMHGMTN-LRTLIMGNNSFHGRIPHEFTDVQ---YVDLSYNSFTGSL 670

Query: 355  ASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFL 414
             S  +L  V+HL LQ NA  G IP  +     L+TL+L DN  SG+IPH I + S LR L
Sbjct: 671  PSFSHLGFVKHLHLQGNAFTGSIPKHVLNPEFLLTLDLGDNNISGKIPHSIGQFSELRVL 730

Query: 415  LLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNS 474
             L GN+  G IP+ LCQL K++++DLS N+FSG IP CF N+   + G+++     +   
Sbjct: 731  SLRGNNFIGQIPNSLCQLSKMSILDLSNNRFSGPIPHCFNNMTFGKRGANEFYAFFQDLI 790

Query: 475  PELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVN 534
                   E+  L     S++M G        +     D + E+ F  K+RY IY G  +N
Sbjct: 791  FFFQRHYEYAVLQGPEPSSSMRG-----RNEDPYLQYDPQDEVGFITKSRYSIYKGDILN 845

Query: 535  RVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKL 594
             ++GLDLS N LTG IP ++GQL +I ALNL +N L GSIP+ FS L  +ESLD+SYN L
Sbjct: 846  FMSGLDLSSNDLTGRIPYELGQLNSIHALNLWHNRLIGSIPKDFSKLHQLESLDLSYNSL 905

Query: 595  TGQIPPQLTALNFLSIFNVSYNNLSGRTPD-KGQFATFDESSYRGNPSLCAWLIQQKYSR 653
            +G+IP QLT LNFL++F V++NN SGR PD K QF TFD SSY GNP LC  +I++K   
Sbjct: 906  SGEIPSQLTNLNFLAVFIVAHNNFSGRIPDMKAQFGTFDGSSYDGNPFLCGSMIERKCET 965

Query: 654  TLKPTTTQASGAEEEEEEEDDDESAIDMVTLYSSFGASYVTVILVLIAILWINSYWRRLW 713
             +    T     +E E +  D    ID V   +SF ASY+T++LV +A+L+IN YWRR W
Sbjct: 966  VVDQPPTML--YDESEGKWYD----IDPVVFSASFVASYITILLVFVALLYINPYWRRRW 1019

Query: 714  FYSIDRCINTWYY 726
            FY I+ CI + YY
Sbjct: 1020 FYLIEECIYSCYY 1032

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358345705|ref|XP_003636916.1| Receptor protein kinase-like protein [Medicago truncatula] gi|355502851|gb|AES84054.1| Receptor protein kinase-like protein [Medicago truncatula]

 Score =  541 bits (1395), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 326/728 (44%), Positives = 432/728 (59%), Gaps = 58/728 (7%)

Query: 1   MNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMF 60
           +++  N   + L  CL NLT L +L++S N  +G+ PS ISNLTSL YL L  N  +G F
Sbjct: 13  LDISYNMFSAQLPECLSNLTNLNVLELSYNLFSGNFPSFISNLTSLAYLSLFGNYMQGSF 72

Query: 61  PLSSLANHSKLEGLLLSTRNNTLHVKTEN--WLPTSQLIVLGLTKCNLN---GSY-PDFL 114
            LS+LANHS L+ L +S+++   +++TE   WLP  QL  L L  CNLN   GS  P FL
Sbjct: 73  SLSTLANHSNLQHLYISSQSIGANIETEKTKWLPKFQLKTLILRNCNLNKDKGSVIPTFL 132

Query: 115 LHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDI 174
            +QY L  +DLS NKLVG FP W +                          H  + +LDI
Sbjct: 133 SYQYSLILMDLSSNKLVGLFPRWFI--------------------------HSSMKYLDI 166

Query: 175 SCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQ 234
           S N+  G LP ++G+ L  + YM+ S N FEGNIP S G+MK+L  LDLS N+FSG L +
Sbjct: 167 SINSLSGFLPKDIGIFLPSVTYMNFSSNNFEGNIPSSIGKMKKLESLDLSHNHFSGELPK 226

Query: 235 SVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVL 294
            + TGC +L+ L LSNN   G    ++ N   +  L+  NNNFSG ++D L ++T L  L
Sbjct: 227 QLATGCDNLQYLKLSNNFLHGNI-PKFYNSMNVEFLFLNNNNFSGTLEDVLGNNTGLVFL 285

Query: 295 DISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPI 354
            ISNN  SG IP  +G FS  + +L MS+N LEG +P++++N+  L+ILD+S+N+L G I
Sbjct: 286 SISNNSFSGTIPSSIGTFS-YIWVLLMSQNILEGEIPIEISNMSSLKILDLSQNKLIGSI 344

Query: 355 ASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFL 414
                L+ +  L LQKN L+G IP EL    +L  L+LR+N FSG+IPH +++ S LR L
Sbjct: 345 PKLSGLTVLRFLYLQKNNLSGSIPSELSEGSQLQLLDLRENKFSGKIPHWMDKLSELRVL 404

Query: 415 LLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANV---LSWRVGSDDVLNGSK 471
           LLGGN L+G IP QLC+L+K+ +MDLSRN  + SIP CF N+   +   V  DD      
Sbjct: 405 LLGGNKLEGDIPIQLCRLKKINIMDLSRNMLNASIPSCFRNMSFGMRQYVDDDD------ 458

Query: 472 LNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGS 531
              P  +  I  G L     + ++     W    E     D + E+EF  K+    Y G 
Sbjct: 459 --GPTFEFSIS-GYLPTISFNASLSIQPPWSLFNE-----DLQFEVEFRTKHYEYFYKGK 510

Query: 532 NVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISY 591
            +  +TGLDLS N LTG IPS IG LQ + ALNLS+N LSG IP +FSNL  IESLD+SY
Sbjct: 511 VLENMTGLDLSWNNLTGLIPSQIGHLQQVRALNLSHNHLSGPIPITFSNLTQIESLDLSY 570

Query: 592 NKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPDKGQFATFDESSYRGNPSLCAWLIQQKY 651
           N L+G+IP +LT LNFLS FNVSYNN SG  P  GQF  FDE SYRGNP LC  L+ QK 
Sbjct: 571 NNLSGKIPNELTQLNFLSTFNVSYNNFSGTPPSTGQFGGFDEDSYRGNPGLCGPLLYQKC 630

Query: 652 SRTLKPTTTQASGAEEEEEEEDDDESAIDMVTLYSSFGASYVTVILVLIAILWINSYWRR 711
            R         S    +  +  + E+ +DM+T Y SF ASY+T++L  I +L +N  WR 
Sbjct: 631 ERV-------ESSPSSQSNDNGEKETMVDMITFYWSFTASYITILLAFITVLCVNPRWRM 683

Query: 712 LWFYSIDR 719
            WFY I +
Sbjct: 684 AWFYYISK 691

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357468869|ref|XP_003604719.1| Receptor protein kinase-like protein [Medicago truncatula] gi|355505774|gb|AES86916.1| Receptor protein kinase-like protein [Medicago truncatula]

 Score =  541 bits (1395), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 326/728 (44%), Positives = 432/728 (59%), Gaps = 58/728 (7%)

Query: 1   MNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMF 60
           +++  N   + L  CL NLT L +L++S N  +G+ PS ISNLTSL YL L  N  +G F
Sbjct: 13  LDISYNMFSAQLPECLSNLTNLNVLELSYNLFSGNFPSFISNLTSLAYLSLFGNYMQGSF 72

Query: 61  PLSSLANHSKLEGLLLSTRNNTLHVKTEN--WLPTSQLIVLGLTKCNLN---GSY-PDFL 114
            LS+LANHS L+ L +S+++   +++TE   WLP  QL  L L  CNLN   GS  P FL
Sbjct: 73  SLSTLANHSNLQHLYISSQSIGANIETEKTKWLPKFQLKTLILRNCNLNKDKGSVIPTFL 132

Query: 115 LHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDI 174
            +QY L  +DLS NKLVG FP W +                          H  + +LDI
Sbjct: 133 SYQYSLILMDLSSNKLVGLFPRWFI--------------------------HSSMKYLDI 166

Query: 175 SCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQ 234
           S N+  G LP ++G+ L  + YM+ S N FEGNIP S G+MK+L  LDLS N+FSG L +
Sbjct: 167 SINSLSGFLPKDIGIFLPSVTYMNFSSNNFEGNIPSSIGKMKKLESLDLSHNHFSGELPK 226

Query: 235 SVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVL 294
            + TGC +L+ L LSNN   G    ++ N   +  L+  NNNFSG ++D L ++T L  L
Sbjct: 227 QLATGCDNLQYLKLSNNFLHGNI-PKFYNSMNVEFLFLNNNNFSGTLEDVLGNNTGLVFL 285

Query: 295 DISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPI 354
            ISNN  SG IP  +G FS  + +L MS+N LEG +P++++N+  L+ILD+S+N+L G I
Sbjct: 286 SISNNSFSGTIPSSIGTFS-YIWVLLMSQNILEGEIPIEISNMSSLKILDLSQNKLIGSI 344

Query: 355 ASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFL 414
                L+ +  L LQKN L+G IP EL    +L  L+LR+N FSG+IPH +++ S LR L
Sbjct: 345 PKLSGLTVLRFLYLQKNNLSGSIPSELSEGSQLQLLDLRENKFSGKIPHWMDKLSELRVL 404

Query: 415 LLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANV---LSWRVGSDDVLNGSK 471
           LLGGN L+G IP QLC+L+K+ +MDLSRN  + SIP CF N+   +   V  DD      
Sbjct: 405 LLGGNKLEGDIPIQLCRLKKIDIMDLSRNMLNASIPSCFRNMSFGMRQYVDDDD------ 458

Query: 472 LNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGS 531
              P  +  I  G L     + ++     W    E     D + E+EF  K+    Y G 
Sbjct: 459 --GPTFEFSIS-GYLPTISFNASLSIQPPWSLFNE-----DLQFEVEFRTKHYEYFYKGK 510

Query: 532 NVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISY 591
            +  +TGLDLS N LTG IPS IG LQ + ALNLS+N LSG IP +FSNL  IESLD+SY
Sbjct: 511 VLENMTGLDLSWNNLTGLIPSQIGHLQQVRALNLSHNHLSGPIPITFSNLTQIESLDLSY 570

Query: 592 NKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPDKGQFATFDESSYRGNPSLCAWLIQQKY 651
           N L+G+IP +LT LNFLS FNVSYNN SG  P  GQF  FDE SYRGNP LC  L+ QK 
Sbjct: 571 NNLSGKIPNELTQLNFLSTFNVSYNNFSGTPPSTGQFGGFDEDSYRGNPGLCGPLLYQKC 630

Query: 652 SRTLKPTTTQASGAEEEEEEEDDDESAIDMVTLYSSFGASYVTVILVLIAILWINSYWRR 711
            R         S    +  +  + E+ +DM+T Y SF ASY+T++L  I +L +N  WR 
Sbjct: 631 ERV-------ESSPSSQSNDNGEKETMVDMITFYWSFTASYITILLAFITVLCVNPRWRM 683

Query: 712 LWFYSIDR 719
            WFY I +
Sbjct: 684 AWFYYISK 691

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	735
TAIR|locus:2019662	965	RLP15 "AT1G74190" [Arabidopsis	0.957	0.729	0.414	5.8e-137
TAIR|locus:2025012	1083	RLP1 "AT1G07390" [Arabidopsis	0.960	0.651	0.415	5.8e-137
TAIR|locus:2037308	976	RLP14 "AT1G74180" [Arabidopsis	0.953	0.718	0.426	2e-136
TAIR|locus:2101943	891	RLP45 "AT3G53240" [Arabidopsis	0.938	0.774	0.404	1.1e-124
TAIR|locus:2040075	935	RLP21 "AT2G25470" [Arabidopsis	0.942	0.741	0.380	5.9e-112
TAIR|locus:2037313	1000	RLP13 "AT1G74170" [Arabidopsis	0.801	0.589	0.402	5.3e-104
TAIR|locus:2155909	908	RLP56 "AT5G49290" [Arabidopsis	0.556	0.450	0.450	1.8e-80
TAIR|locus:2120362	1249	GSO1 "GASSHO1" [Arabidopsis th	0.842	0.495	0.318	4.1e-67
TAIR|locus:2156349	1252	GSO2 "GASSHO 2" [Arabidopsis t	0.855	0.502	0.317	5e-66
TAIR|locus:2020457	1166	BRL1 "BRI1 like" [Arabidopsis	0.861	0.542	0.318	3.3e-64

TAIR|locus:2019662 RLP15 "AT1G74190" [Arabidopsis thaliana (taxid:3702)]

 Score = 1341 (477.1 bits), Expect = 5.8e-137, P = 5.8e-137
 Identities = 301/726 (41%), Positives = 429/726 (59%)

Query:     1 MNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMF 60
             ++L +N +   L +CL +LT L++LD+SSN+L G++PS + +L SLEYL L  N+FEG F
Sbjct:   249 LDLSQNKLVGHLPSCLTSLTGLRVLDLSSNKLTGTVPSSLGSLQSLEYLSLFDNDFEGSF 308

Query:    61 PLSSLANHSKLEGLLLSTRNNTLHVKTEN-WLPTSQLIVLGLTKCNLNGSYPDFLLHQYH 119
                SLAN S L  L L +++++L V +E+ W P  QL V+ L  CN+    P FLLHQ  
Sbjct:   309 SFGSLANLSNLMVLKLCSKSSSLQVLSESSWKPKFQLSVIALRSCNME-KVPHFLLHQKD 367

Query:   120 LKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNF 179
             L+++DLS N + G  P+WLL NN KL+VLLL+NN F+   Q+PK+ H+ L  LD+S N+F
Sbjct:   368 LRHVDLSDNNISGKLPSWLLANNTKLKVLLLQNNLFTSF-QIPKSAHNLLF-LDVSANDF 425

Query:   180 RGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTG 239
                 P N+G I   L Y++ SKN F+ N+P S G M  +  +DLSRN F G L +S V G
Sbjct:   426 NHLFPENIGWIFPHLRYLNTSKNNFQENLPSSLGNMNGIQYMDLSRNSFHGNLPRSFVNG 485

Query:   240 CFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNN 299
             C+S+ +L LS+N   G+ F E  N T +  L+ +NN F+GKI  GL S  +L++LD+SNN
Sbjct:   486 CYSMAILKLSHNKLSGEIFPESTNFTNILGLFMDNNLFTGKIGQGLRSLINLELLDMSNN 545

Query:   300 MLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLN 359
              L+G IP W+G   S L  L +S N L+G++P+ L N   L++LD+S N LSG I    +
Sbjct:   546 NLTGVIPSWIGELPS-LTALLISDNFLKGDIPMSLFNKSSLQLLDLSANSLSGVIPPQHD 604

Query:   360 LSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGN 419
               +   L LQ N L+G IP  L  + ++  L+LR+N FSG+IP  IN   N+  LLL GN
Sbjct:   605 SRNGVVLLLQDNKLSGTIPDTLLANVEI--LDLRNNRFSGKIPEFINIQ-NISILLLRGN 661

Query:   420 HLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSD----DVLNGSKLNSP 475
             +  G IP QLC L  + ++DLS N+ +G+IP C +N  S+  G +    D   G    S 
Sbjct:   662 NFTGQIPHQLCGLSNIQLLDLSNNRLNGTIPSCLSNT-SFGFGKECTSYDYDFGISFPSD 720

Query:   476 ELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNR 535
               +         +N++    F     L  L        + +IEFA K+RY+ Y G N+  
Sbjct:   721 VFNGFSLHQDFSSNKNGGIYFKSLLTLDPLSMDYKAATQTKIEFATKHRYDAYMGGNLKL 780

Query:   536 VTGLDLSCNQLTGEIPSDIGQLQAILAXXXXXXXXXGSIPESFSNLKMIESLDISYNKLT 595
             + G+DLS N+L+GEIP + G L  + A         G IP+S S+++ +ES D+S+N+L 
Sbjct:   781 LFGMDLSENELSGEIPVEFGGLLELRALNLSHNNLSGVIPKSISSMEKMESFDLSFNRLQ 840

Query:   596 GQIPPQLTALNFLSIFNVSYNNLSGRTPDKGQFATFDESSYRGNPSLCAWLIQQKYSRTL 655
             G+IP QLT L  LS+F VS+NNLSG  P   QF TFD  SY GN  LC     Q  +R+ 
Sbjct:   841 GRIPSQLTELTSLSVFKVSHNNLSGVIPQGRQFNTFDAESYFGNRLLCG----QPTNRSC 896

Query:   656 KPTTTQASGAXXXXXXXXXXXSAIDMVTLYSSFGASYVTVILVLIAILWINSYWRRLWFY 715
                + + +             S IDMV+ Y SF A+YVT+++ ++A L  +S W R WFY
Sbjct:   897 NNNSYEEAD-----NGVEADESIIDMVSFYLSFAAAYVTILIGILASLSFDSPWSRFWFY 951

Query:   716 SIDRCI 721
              +D  I
Sbjct:   952 KVDAFI 957

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2025012 RLP1 "AT1G07390" [Arabidopsis thaliana (taxid:3702)]

 Score = 1341 (477.1 bits), Expect = 5.8e-137, P = 5.8e-137
 Identities = 301/725 (41%), Positives = 417/725 (57%)

Query:     1 MNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTS-LEYLDLSHNNFEGM 59
             ++L  N + S L  CL NLT L+ LD+S+NQLNG+L S +S L S LEYL L  NNF+G 
Sbjct:   363 LDLSSNALTS-LPYCLGNLTHLRTLDLSNNQLNGNLSSFVSGLPSVLEYLSLLDNNFDGS 421

Query:    60 FPLSSLANHSKLEGLLLSTRNNTLHVKTEN-WLPTSQLIVLGLTKCNLNGSYPDFLLHQY 118
             F  +SL N ++L    LS++   + V+TE+ W P  QL +L L+ C+L  +   FL+HQ 
Sbjct:   422 FLFNSLVNQTRLTVFKLSSKVGVIQVQTESSWAPLFQLKMLYLSNCSLGSTMLGFLVHQR 481

Query:   119 HLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNN 178
              L ++DLSHNKL G FPTWL++NN +L+ +LL  NS +  LQLP   H  L  LDIS N 
Sbjct:   482 DLCFVDLSHNKLTGTFPTWLVKNNTRLQTILLSGNSLTK-LQLPILVHG-LQVLDISSNM 539

Query:   179 FRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVT 238
                 +  ++G++   L +M+ S N F+G IP S GEMK L +LD+S N   G L    ++
Sbjct:   540 IYDSIQEDIGMVFPNLRFMNFSSNHFQGTIPSSIGEMKSLQVLDMSSNGLYGQLPIMFLS 599

Query:   239 GCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISN 298
             GC+SL +L LSNN  +G+ FS++ NLT L  L+ + NNF+G +++GLL S +L +LDIS+
Sbjct:   600 GCYSLRVLKLSNNQLQGKIFSKHANLTGLVGLFLDGNNFTGSLEEGLLKSKNLTLLDISD 659

Query:   299 NMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSL 358
             N  SG +P W+G  S  L  L MS N L+G  P  L     + ++DIS N  SG I  ++
Sbjct:   660 NRFSGMLPLWIGRIS-RLSYLYMSGNQLKGPFPF-LRQSPWVEVMDISHNSFSGSIPRNV 717

Query:   359 NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGG 418
             N  S+  L LQ N   GL+PG LF++  L  L+LR+N FSG+I + I++ S LR LLL  
Sbjct:   718 NFPSLRELRLQNNEFTGLVPGNLFKAAGLEVLDLRNNNFSGKILNTIDQTSKLRILLLRN 777

Query:   419 NHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELD 478
             N  Q  IP ++CQL ++ ++DLS N+F G IP CF+  +S+    +D        +  L 
Sbjct:   778 NSFQTYIPGKICQLSEVGLLDLSHNQFRGPIPSCFSK-MSFGAEQND-------RTMSLV 829

Query:   479 EEIEFGSLGNNRSSNTMFGMWRWLS-ALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVT 537
              + +F  +      +  +G    L   +           ++F  K+RYE Y G  +  + 
Sbjct:   830 ADFDFSYI--TFLPHCQYGSHLNLDDGVRNGYQPKPATVVDFLTKSRYEAYQGDILRYMH 887

Query:   538 GLDLSCNQLTGEIPSDIGQLQAILAXXXXXXXXXGSIPESFSNLKMIESLDISYNKLTGQ 597
             GLDLS N+L+GEIP +IG LQ I +         GSIP+S S LK +ESLD+S NKL G 
Sbjct:   888 GLDLSSNELSGEIPIEIGDLQNIRSLNLSSNRLTGSIPDSISKLKGLESLDLSNNKLDGS 947

Query:   598 IPPQLTALNFLSIFNVSYNNLSGRTPDKGQFATFDESSYRGNPSLCAWLIQQKYSRTLKP 657
             IPP L  LN L   N+SYNNLSG  P KG   TFDE SY GN  LC     +       P
Sbjct:   948 IPPALADLNSLGYLNISYNNLSGEIPFKGHLVTFDERSYIGNAHLCGLPTNKNCISQRVP 1007

Query:   658 TTTQASGAXXXXXXXXXXXSAIDMVTLYSSFGASYVTVILVLIAILWINSYWRRLWFYSI 717
                  S             + IDMV  Y +  A Y++  L L A L+I+S W R WFY +
Sbjct:  1008 EPPSVS-THAKEEENEEEGNVIDMVWFYWTCAAVYISTSLALFAFLYIDSRWSREWFYRV 1066

Query:   718 DRCIN 722
             D C++
Sbjct:  1067 DLCVH 1071

GO:0005575 "cellular_component" evidence=ND

GO:0007165 "signal transduction" evidence=IC

GO:0006457 "protein folding" evidence=RCA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2037308 RLP14 "AT1G74180" [Arabidopsis thaliana (taxid:3702)]

 Score = 1336 (475.4 bits), Expect = 2.0e-136, P = 2.0e-136
 Identities = 309/724 (42%), Positives = 430/724 (59%)

Query:     1 MNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMF 60
             ++L  N+    L  CL NL +L++LD+SSNQL+G+LP+  ++L SLEYL LS NNFEG F
Sbjct:   265 LDLRGNYFEGQLPVCLGNLNKLRVLDLSSNQLSGNLPASFNSLESLEYLSLSDNNFEGFF 324

Query:    61 PLSSLANHSKLEGLLLSTRNNTLHVKTE-NWLPTSQLIVLGLTKCNLNGSYPDFLLHQYH 119
              L+ LAN +KL+   LS+ +  L V+TE NWLP  QL V  L  C+L G  P+FL++Q +
Sbjct:   325 SLNPLANLTKLKVFRLSSTSEMLQVETESNWLPKFQLTVAALPFCSL-GKIPNFLVYQTN 383

Query:   120 LKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNF 179
             L+ +DLS N+L G+ PTWLL NNP+L+VL LKNNSF+ I Q+P   H  L  LD S N+ 
Sbjct:   384 LRLVDLSSNRLSGDIPTWLLENNPELKVLQLKNNSFT-IFQIPTIVHK-LQVLDFSANDI 441

Query:   180 RGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTG 239
              G LP N+G +L +L++M+ S N F+GN+P S GEM ++S LDLS N FSG L +S++TG
Sbjct:   442 TGVLPDNIGHVLPRLLHMNGSHNGFQGNLPSSMGEMNDISFLDLSYNNFSGELPRSLLTG 501

Query:   240 CFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNN 299
             CFSL  L LS+N+F G        LT L  L   NN F+G+I  GL +  +L + D SNN
Sbjct:   502 CFSLITLQLSHNSFSGPILPIQTRLTSLIVLRMHNNLFTGEIGVGLRTLVNLSIFDASNN 561

Query:   300 MLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLN 359
              L+G I   +   SS L +L +S N LEG +P  L  +  L  LD+S N LSG + SS+ 
Sbjct:   562 RLTGLISSSIPPDSSHLIMLLLSNNLLEGTLPPSLLAIHHLNFLDLSGNLLSGDLPSSV- 620

Query:   360 LSSVEHLS--LQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLG 417
             ++S+  +   L  N+  G +P  L  +  +  L+LR+N  SG IP  +N    +  LLL 
Sbjct:   621 VNSMYGIKIFLHNNSFTGPLPVTLLENAYI--LDLRNNKLSGSIPQFVNTGKMIT-LLLR 677

Query:   418 GNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPEL 477
             GN+L G IP +LC L  + ++DLS NK +G IPPC  N LS  +G    L+G        
Sbjct:   678 GNNLTGSIPRKLCDLTSIRLLDLSDNKLNGVIPPCL-NHLSTELGEGIGLSG-------F 729

Query:   478 DEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVT 537
              +EI FG         + F +  ++   +    I   VEIEFA K RY+ ++G  ++ + 
Sbjct:   730 SQEISFGDSLQMEFYRSTFLVDEFMLYYDSTYMI---VEIEFAAKQRYDSFSGGTLDYMY 786

Query:   538 GLDLSCNQLTGEIPSDIGQLQAILAXXXXXXXXXGSIPESFSNLKMIESLDISYNKLTGQ 597
             GLDLS N+L+G IP+++G L  + A          SIP +FS LK IESLD+SYN L G 
Sbjct:   787 GLDLSSNELSGVIPAELGDLSKLRALNLSRNLLSSSIPANFSKLKDIESLDLSYNMLQGN 846

Query:   598 IPPQLTALNFLSIFNVSYNNLSGRTPDKGQFATFDESSYRGNPSLCAWLIQQKYSRTLKP 657
             IP QLT L  L++FNVS+NNLSG  P  GQF TF+++SY GNP LC     +      K 
Sbjct:   847 IPHQLTNLTSLAVFNVSFNNLSGIIPQGGQFNTFNDNSYLGNPLLCGTPTDRSCEG--KK 904

Query:   658 TTTQASGAXXXXXXXXXXXSAIDMVTLYSSFGASYVTVILVLIAILWINSYWRRLWFYSI 717
              T +A              +AIDMV LY + G++Y   ++ ++ ++  +  WRR W   +
Sbjct:   905 NTKEADNGGEEEEEDDDDEAAIDMVVLYWTTGSTYAIALIGILVLMCFDCPWRRTWLCIV 964

Query:   718 DRCI 721
             D  I
Sbjct:   965 DAFI 968

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2101943 RLP45 "AT3G53240" [Arabidopsis thaliana (taxid:3702)]

 Score = 1225 (436.3 bits), Expect = 1.1e-124, P = 1.1e-124
 Identities = 296/732 (40%), Positives = 417/732 (56%)

Query:     1 MNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMF 60
             + L RN     +  C    ++L++LD+SSN L+G +P  IS+  S+EYL L  N+FEG+F
Sbjct:   183 LRLSRNRFEGEIPLCFSRFSKLRVLDLSSNHLSGKIPYFISDFKSMEYLSLLDNDFEGLF 242

Query:    61 PLSSLANHSKLEGLLLSTRNNTLHVKTENWLP--TSQLIVLGLTKCNLNGSYPDFLLHQY 118
              L  +   ++L+   LS+R+  L +   N      SQL  + L+ CNL G  P FL +Q 
Sbjct:   243 SLGLITELTELKVFKLSSRSGMLQIVETNVSGGLQSQLSSIMLSHCNL-GKIPGFLWYQQ 301

Query:   119 HLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNN 178
              L+ +DLS+N L G FPTWLL NN +L+ LLL+NNSF   L LP+     L  LD+S NN
Sbjct:   302 ELRVIDLSNNILSGVFPTWLLENNTELQALLLQNNSFK-TLTLPRTMRR-LQILDLSVNN 359

Query:   179 FRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVT 238
             F  +LP ++G+IL  L ++++S N F GN+P S   M+ +  +DLS N FSG L +++ T
Sbjct:   360 FNNQLPKDVGLILASLRHLNLSNNEFLGNMPSSMARMENIEFMDLSYNNFSGKLPRNLFT 419

Query:   239 GCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISN 298
             GC+SL  L LS+N F G    +  + T L  L  +NN F+GKI   LL+   L V+D+SN
Sbjct:   420 GCYSLSWLKLSHNRFSGPIIRKSSDETSLITLIMDNNMFTGKIPRTLLNLRMLSVIDLSN 479

Query:   299 NMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSG--PIAS 356
             N+L+G IP W+GNF   LE+L +S N L+G +P  L N+  L +LD+S N LSG  P+ S
Sbjct:   480 NLLTGTIPRWLGNFF--LEVLRISNNRLQGAIPPSLFNIPYLWLLDLSGNFLSGSLPLRS 537

Query:   357 SLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLL 416
             S +   +  L L  N L G IP  L+   +L  L+LR+N  SG IP       ++  +LL
Sbjct:   538 SSDYGYI--LDLHNNNLTGSIPDTLWYGLRL--LDLRNNKLSGNIP-LFRSTPSISVVLL 592

Query:   417 GGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGS-----DDVLNGSK 471
               N+L G IP +LC L  + M+D + N+ + SIP C  N LS+  G       D    S 
Sbjct:   593 RENNLTGKIPVELCGLSNVRMLDFAHNRLNESIPSCVTN-LSFGSGGHSNADSDWYPASL 651

Query:   472 L-NSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNG 530
             L N  E+  E+ + SL      +  F +           ++D  V++EFA+K RY++Y  
Sbjct:   652 LSNFMEIYTEVYYESL----IVSDRFSL---------DYSVDFNVQVEFAVKQRYDLYMR 698

Query:   531 SNVNRVTGLDLSCNQLTGEIPSDIGQLQAILAXXXXXXXXXGSIPESFSNLKMIESLDIS 590
               +N++ GLDLS N+L+G IP ++G L+ + +         GSIP SFSNL+ IESLD+S
Sbjct:   699 GTLNQMFGLDLSSNELSGNIPEELGDLKRVRSLNLSRNSLSGSIPGSFSNLRSIESLDLS 758

Query:   591 YNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPDKGQFATFDESSYRGNPSLCAWLIQQK 650
             +NKL G IP QLT L  L +FNVSYNNLSG  P   QF TF E SY GN  LC       
Sbjct:   759 FNKLHGTIPSQLTLLQSLVVFNVSYNNLSGVIPQGKQFNTFGEKSYLGNFLLCG----SP 814

Query:   651 YSRTLKPTTTQASGAXXXXXXXXXXXSAIDMVTLYSSFGASYVTVILVLIAILWINSYWR 710
               R+   TT  +SG              +D+V L+ S G +YVTV++  +  L  +S WR
Sbjct:   815 TKRSCGGTTI-SSGKEYEDDDES---GLLDIVVLWWSLGTTYVTVMMGFLVFLCFDSPWR 870

Query:   711 RLWFYSIDRCIN 722
             R WF  +D  I+
Sbjct:   871 RAWFCLVDTFID 882

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2040075 RLP21 "AT2G25470" [Arabidopsis thaliana (taxid:3702)]

 Score = 1105 (394.0 bits), Expect = 5.9e-112, P = 5.9e-112
 Identities = 278/730 (38%), Positives = 393/730 (53%)

Query:     1 MNLERNFIGSPL-ITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGM 59
             + L +N +  P+ I     L  L+ LD+  N   G +P  + +L  L  LDLS N   G 
Sbjct:   226 LGLAQNHVDGPIPIEVFCKLKNLRDLDLKGNHFVGQIPLCLGSLKKLRVLDLSSNQLSGD 285

Query:    60 FPLSSLANHSKLEGLLLSTRN--NTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQ 117
              P SS ++   LE L LS  N   +  +     L   + +V+ L  C+L    P FLL+Q
Sbjct:   286 LP-SSFSSLESLEYLSLSDNNFDGSFSLNPLTNLTNLKFVVV-LRFCSLE-KIPSFLLYQ 342

Query:   118 YHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCN 177
               L+ +DLS N L GN PTWLL NNP+LEVL L+NNSF+ I  +P   H+ L   D S N
Sbjct:   343 KKLRLVDLSSNNLSGNIPTWLLTNNPELEVLQLQNNSFT-IFPIPTMVHN-LQIFDFSAN 400

Query:   178 NFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVV 237
             N  GK P  M   L  L+ ++ S N F+G  P S GEMK +S LDLS N FSG L +S V
Sbjct:   401 NI-GKFPDKMDHALPNLVRLNGSNNGFQGYFPTSIGEMKNISFLDLSYNNFSGKLPRSFV 459

Query:   238 TGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDIS 297
             TGC S+  L LS+N F G+F     N   L  L  +NN F+G I  GL +ST L++LD+S
Sbjct:   460 TGCVSIMFLKLSHNKFSGRFLPRETNFPSLDVLRMDNNLFTGNIGGGLSNSTMLRILDMS 519

Query:   298 NNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASS 357
             NN LSG IP W+  F   L+ + +S N LEG +P  L  +  L  LD+S N+ SG + S 
Sbjct:   520 NNGLSGAIPRWLFEFPY-LDYVLISNNFLEGTIPPSLLGMPFLSFLDLSGNQFSGALPSH 578

Query:   358 LNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLG 417
             ++     ++ L  N   G IP  L +S ++  L+LR+N  SG IP Q ++  ++  LLL 
Sbjct:   579 VDSELGIYMFLHNNNFTGPIPDTLLKSVQI--LDLRNNKLSGSIP-QFDDTQSINILLLK 635

Query:   418 GNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPEL 477
             GN+L G IP +LC L  + ++DLS NK +G IP C +N+   R+  D +     LN P  
Sbjct:   636 GNNLTGSIPRELCDLSNVRLLDLSDNKLNGVIPSCLSNLSFGRLQEDAMA----LNIPPS 691

Query:   478 DEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSN----- 532
               +    SL      +T       +  +E   +  +  EI+FA K RY+ Y+G +     
Sbjct:   692 FLQT---SLEMELYKSTFL-----VDKIEVDRSTYQETEIKFAAKQRYDSYSGRSEFSEG 743

Query:   533 -VNRVTGLDLSCNQLTGEIPSDIGQLQAILAXXXXXXXXXGSIPESFSNLKMIESLDISY 591
              +  + G+DLS N+L+G IP+++G L  +           GSIP SFS L  +ESLD+S+
Sbjct:   744 ILRLMYGMDLSNNELSGVIPTELGDLLKLRTLNLSHNSLLGSIPSSFSKLIDVESLDLSH 803

Query:   592 NKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPDKGQFATFDESSYRGNPSLCAWLIQQKY 651
             N L G IP  L++L  L++F+VS NNLSG  P   QF TF+E SY GNP LC        
Sbjct:   804 NMLQGSIPQLLSSLTSLAVFDVSSNNLSGIIPQGRQFNTFEEESYLGNPLLCG----PPT 859

Query:   652 SRTLKPTTTQASGAXXXXXXXXXXXSAIDMVTLYSSFGASYVTVILVLIAILWINSYWRR 711
             SR+ +  T ++              +AIDM+  Y S  + YVT ++ ++ ++  +  WRR
Sbjct:   860 SRSCE--TNKSPEEADNGQEEEDDKAAIDMMVFYFSTASIYVTALIGVLVLMCFDCPWRR 917

Query:   712 LWFYSIDRCI 721
              W   +D  I
Sbjct:   918 AWLRIVDAFI 927

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2037313 RLP13 "AT1G74170" [Arabidopsis thaliana (taxid:3702)]

 Score = 1030 (367.6 bits), Expect = 5.3e-104, P = 5.3e-104
 Identities = 248/616 (40%), Positives = 349/616 (56%)

Query:     1 MNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMF 60
             + L  N +      CL +LT L++LD+SSNQL G++PS ++NL SLEYL L  NNFEG F
Sbjct:   263 LKLSNNKLAGQFPLCLTSLTGLRVLDLSSNQLTGNVPSALANLESLEYLSLFGNNFEGFF 322

Query:    61 PLSSLANHSKLEGLLLSTRNNTLHVKTE-NWLPTSQLIVLGLTKCNLNGSYPDFLLHQYH 119
              L  LAN SKL+ L L +++N+L V+ E +W P  QL+V+ L  CNL    P FLLHQ  
Sbjct:   323 SLGLLANLSKLKVLRLDSQSNSLEVEFETSWKPKFQLVVIALRSCNLE-KVPHFLLHQKD 381

Query:   120 LKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNF 179
             L ++DLS N++ GNFP+WLL NN KLEVLLL+NNSF+   QLPK+ H+ L  L++S N F
Sbjct:   382 LHHVDLSDNQIHGNFPSWLLENNTKLEVLLLQNNSFTSF-QLPKSAHNLLF-LNVSVNKF 439

Query:   180 RGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTG 239
                   N G IL  L+ ++++ N F+GN+P S   MK +  LDLS N F G L +  + G
Sbjct:   440 NHLFLQNFGWILPHLVCVNLAYNGFQGNLPSSLDNMKSIEFLDLSHNRFHGKLPRRFLKG 499

Query:   240 CFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNN 299
             C++L +L LS+N   G+ F E  N TRL  +  +NN F+G I  G  S  SL VLDISNN
Sbjct:   500 CYNLTILKLSHNKLSGEVFPEAANFTRLWVMSMDNNLFTGNIGKGFRSLPSLNVLDISNN 559

Query:   300 MLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLN 359
              L+G IP W+G     L  L +S N LEG +P  L N+  L++LD+S NRLSG I    +
Sbjct:   560 KLTGVIPSWIGERQG-LFALQLSNNMLEGEIPTSLFNISYLQLLDLSSNRLSGDIPP--H 616

Query:   360 LSSVEH---LSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLL 416
             +SS+ H   L LQ N L+G+IP  L  +  ++ L+LR+N  SG +P  IN   N+  LLL
Sbjct:   617 VSSIYHGAVLLLQNNNLSGVIPDTLLLN--VIVLDLRNNRLSGNLPEFINTQ-NISILLL 673

Query:   417 GGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANV-LSWRVGSD----DVLNG-S 470
              GN+  G IP Q C L  + ++DLS NKF+GSIP C +N     R G D    DV +   
Sbjct:   674 RGNNFTGQIPHQFCSLSNIQLLDLSNNKFNGSIPSCLSNTSFGLRKGDDSYRYDVPSRFG 733

Query:   471 KLNSPELDEEI----EFGSLGNNRSSNTM-FGM-WRWLSALEKRAAIDERVEI-EFAMKN 523
                 P   E +    EF  +    S   + F    R+ + +     +   +++ E  +  
Sbjct:   734 TAKDPVYFESLLMIDEFNMVNETNSQTKIEFATKHRYDAYMGGNLKLLFGMDLSENELSG 793

Query:   524 RYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILAXXXXXXXXXGSIPESFSNLKM 583
                +  G  V  +  L+LS N L+G I      L+ + +         G IP   +++  
Sbjct:   794 EIPVELGGLVE-LEALNLSHNNLSGVILESFSGLKNVESLDLSFNRLQGPIPLQLTDMIS 852

Query:   584 IESLDISYNKLTGQIP 599
             +   ++SYN L+G +P
Sbjct:   853 LAVFNVSYNNLSGIVP 868

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2155909 RLP56 "AT5G49290" [Arabidopsis thaliana (taxid:3702)]

 Score = 808 (289.5 bits), Expect = 1.8e-80, P = 1.8e-80
 Identities = 191/424 (45%), Positives = 255/424 (60%)

Query:     6 NFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSL 65
             NF+G  L  C  NL +L+ LD+SSNQL G++P   S+L SLEYL LS N+FEG F L+ L
Sbjct:   231 NFVGQ-LPLCFGNLNKLRFLDLSSNQLTGNIPPSFSSLESLEYLSLSDNSFEGFFSLNPL 289

Query:    66 ANHSKLEGLLLSTRNNTLHVKTEN-WLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLD 124
              N +KL+  + S++++ + VK E+ W P  QL VL L  C+L    P+FL++Q +L  +D
Sbjct:   290 TNLTKLKVFIFSSKDDMVQVKIESTWQPLFQLSVLVLRLCSLE-KIPNFLMYQKNLHVVD 348

Query:   125 LSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLP 184
             LS N++ G  PTWLL NNP+LEVL LKNNSF+ I Q+P + H+ L  LD S NN  G  P
Sbjct:   349 LSGNRISGIIPTWLLENNPELEVLQLKNNSFT-IFQMPTSVHN-LQVLDFSENNIGGLFP 406

Query:   185 HNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLE 244
              N G +L  L++M+ S N F+GN P S GEM  +S LDLS N  SG L QS V+ CFSL 
Sbjct:   407 DNFGRVLPNLVHMNGSNNGFQGNFPSSMGEMYNISFLDLSYNNLSGELPQSFVSSCFSLS 466

Query:   245 LLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGH 304
             +L LS+N F G F     N T L  L   NN F+GKI  GLL+   L +LD+SNN L G 
Sbjct:   467 ILQLSHNKFSGHFLPRQTNFTSLIVLRINNNLFTGKIGVGLLTLVDLCILDMSNNFLEGE 526

Query:   305 IPHWMGNFSSELEILSMSKNHLEGNVP--VQLNNLERLRILDISENRLSGPIASSLNLSS 362
             +P  +  F   L  L +S N L G +P  V L+N     +L +  N  +GPI  +  L S
Sbjct:   527 LPPLLLVFEY-LNFLDLSGNLLSGALPSHVSLDN-----VLFLHNNNFTGPIPDTF-LGS 579

Query:   363 VEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQ 422
             ++ L L+ N L+G IP +   +  +  L LR N+ +G IP  + E S +R L L  N L 
Sbjct:   580 IQILDLRNNKLSGNIP-QFVDTQDISFLLLRGNSLTGYIPSTLCEFSKMRLLDLSDNKLN 638

Query:   423 GPIP 426
             G IP
Sbjct:   639 GFIP 642

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2120362 GSO1 "GASSHO1" [Arabidopsis thaliana (taxid:3702)]

 Score = 691 (248.3 bits), Expect = 4.1e-67, P = 4.1e-67
 Identities = 206/646 (31%), Positives = 317/646 (49%)

Query:     6 NFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSL 65
             N +   +   L  L  L+IL++++N L G +PS +  ++ L+YL L  N  +G+ P  SL
Sbjct:   225 NMLNGTIPAELGRLENLEILNLANNSLTGEIPSQLGEMSQLQYLSLMANQLQGLIP-KSL 283

Query:    66 ANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLL-HQYHLKYLD 124
             A+   L+ L LS  N T  +  E W   SQL+ L L   +L+GS P  +  +  +L+ L 
Sbjct:   284 ADLGNLQTLDLSANNLTGEIPEEFW-NMSQLLDLVLANNHLSGSLPKSICSNNTNLEQLV 342

Query:   125 LSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNN--FRGK 182
             LS  +L G  P  L +    L+ L L NNS +G   +P+A  + +   D+  +N    G 
Sbjct:   343 LSGTQLSGEIPVELSKCQ-SLKQLDLSNNSLAG--SIPEALFELVELTDLYLHNNTLEGT 399

Query:   183 LPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFS 242
             L  ++   L  L ++ +  N  EG +P     +++L +L L  N FSG + Q +   C S
Sbjct:   400 LSPSISN-LTNLQWLVLYHNNLEGKLPKEISALRKLEVLFLYENRFSGEIPQEI-GNCTS 457

Query:   243 LELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLS 302
             L+++D+  N+FEG+       L  L  L+   N   G +   L +   L +LD+++N LS
Sbjct:   458 LKMIDMFGNHFEGEIPPSIGRLKELNLLHLRQNELVGGLPASLGNCHQLNILDLADNQLS 517

Query:   303 GHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSS 362
             G IP   G F   LE L +  N L+GN+P  L +L  L  +++S NRL+G I      SS
Sbjct:   518 GSIPSSFG-FLKGLEQLMLYNNSLQGNLPDSLISLRNLTRINLSHNRLNGTIHPLCGSSS 576

Query:   363 VEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQ 422
                  +  N     IP EL  S  L  L L  N  +G+IP  + +   L  L +  N L 
Sbjct:   577 YLSFDVTNNGFEDEIPLELGNSQNLDRLRLGKNQLTGKIPWTLGKIRELSLLDMSSNALT 636

Query:   423 GPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIE 482
             G IP QL   +KL  +DL+ N  SG IPP       W +G    L   KL+S +  E + 
Sbjct:   637 GTIPLQLVLCKKLTHIDLNNNFLSGPIPP-------W-LGKLSQLGELKLSSNQFVESLP 688

Query:   483 FGSLGNNRSSNTMFGMWRWLS-ALEKRAAIDERVEIEFAMKNRYE--IYNG-SNVNRVTG 538
                L N      +      L+ ++ +       + +    KN++   +      ++++  
Sbjct:   689 T-ELFNCTKLLVLSLDGNSLNGSIPQEIGNLGALNVLNLDKNQFSGSLPQAMGKLSKLYE 747

Query:   539 LDLSCNQLTGEIPSDIGQLQAIL-AXXXXXXXXXGSIPESFSNLKMIESLDISYNKLTGQ 597
             L LS N LTGEIP +IGQLQ +  A         G IP +   L  +E+LD+S+N+LTG+
Sbjct:   748 LRLSRNSLTGEIPVEIGQLQDLQSALDLSYNNFTGDIPSTIGTLSKLETLDLSHNQLTGE 807

Query:   598 IPPQLTALNFLSIFNVSYNNLSGRTPDKGQFATFDESSYRGNPSLC 643
             +P  +  +  L   NVS+NNL G+   K QF+ +   S+ GN  LC
Sbjct:   808 VPGSVGDMKSLGYLNVSFNNLGGKL--KKQFSRWPADSFLGNTGLC 851

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0008544 "epidermis development" evidence=IGI

GO:0009790 "embryo development" evidence=IGI

TAIR|locus:2156349 GSO2 "GASSHO 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 681 (244.8 bits), Expect = 5.0e-66, P = 5.0e-66
 Identities = 214/674 (31%), Positives = 330/674 (48%)

Query:     6 NFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFP--LS 63
             N +   L   L  L  L+ L++  N  +G +PS + +L S++YL+L  N  +G+ P  L+
Sbjct:   226 NRLNGSLPAELNRLKNLQTLNLGDNSFSGEIPSQLGDLVSIQYLNLIGNQLQGLIPKRLT 285

Query:    64 SLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLL-HQYHLKY 122
              LAN   L+ L LS+ N T  +  E W   +QL  L L K  L+GS P  +  +   LK 
Sbjct:   286 ELAN---LQTLDLSSNNLTGVIHEEFWR-MNQLEFLVLAKNRLSGSLPKTICSNNTSLKQ 341

Query:   123 LDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDF--LHHLDISCNNFR 180
             L LS  +L G  P  +  N   L++L L NN+ +G  Q+P +      L +L ++ N+  
Sbjct:   342 LFLSETQLSGEIPAEI-SNCQSLKLLDLSNNTLTG--QIPDSLFQLVELTNLYLNNNSLE 398

Query:   181 GKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGC 240
             G L  ++   L  L    +  N  EG +P   G + +L ++ L  N FSG +   +   C
Sbjct:   399 GTLSSSISN-LTNLQEFTLYHNNLEGKVPKEIGFLGKLEIMYLYENRFSGEMPVEI-GNC 456

Query:   241 FSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNM 300
               L+ +D   N   G+  S    L  L  L+   N   G I   L +   + V+D+++N 
Sbjct:   457 TRLQEIDWYGNRLSGEIPSSIGRLKDLTRLHLRENELVGNIPASLGNCHQMTVIDLADNQ 516

Query:   301 LSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNL 360
             LSG IP   G F + LE+  +  N L+GN+P  L NL+ L  ++ S N+ +G I+     
Sbjct:   517 LSGSIPSSFG-FLTALELFMIYNNSLQGNLPDSLINLKNLTRINFSSNKFNGSISPLCGS 575

Query:   361 SSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNH 420
             SS     + +N   G IP EL +S  L  L L  N F+GRIP    + S L  L +  N 
Sbjct:   576 SSYLSFDVTENGFEGDIPLELGKSTNLDRLRLGKNQFTGRIPRTFGKISELSLLDISRNS 635

Query:   421 LQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEE 480
             L G IP +L   +KL  +DL+ N  SG IP       +W +G   +L   KL+S +    
Sbjct:   636 LSGIIPVELGLCKKLTHIDLNNNYLSGVIP-------TW-LGKLPLLGELKLSSNKFVGS 687

Query:   481 I--EFGSLGNNRS----SNTMFG-MWRWLSALEKRAAID-ERVEIEFAMKNRYEIYNGSN 532
             +  E  SL N  +     N++ G + + +  L+   A++ E  ++   + +         
Sbjct:   688 LPTEIFSLTNILTLFLDGNSLNGSIPQEIGNLQALNALNLEENQLSGPLPSTI-----GK 742

Query:   533 VNRVTGLDLSCNQLTGEIPSDIGQLQAIL-AXXXXXXXXXGSIPESFSNLKMIESLDISY 591
             ++++  L LS N LTGEIP +IGQLQ +  A         G IP + S L  +ESLD+S+
Sbjct:   743 LSKLFELRLSRNALTGEIPVEIGQLQDLQSALDLSYNNFTGRIPSTISTLPKLESLDLSH 802

Query:   592 NKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPDKGQFATFDESSYRGNPSLCAWLIQQ-- 649
             N+L G++P Q+  +  L   N+SYNNL G+   K QF+ +   ++ GN  LC   +    
Sbjct:   803 NQLVGEVPGQIGDMKSLGYLNLSYNNLEGKL--KKQFSRWQADAFVGNAGLCGSPLSHCN 860

Query:   650 ----KYSRTLKPTT 659
                 K  R+L P T
Sbjct:   861 RAGSKNQRSLSPKT 874

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009553 "embryo sac development" evidence=IMP

GO:0008544 "epidermis development" evidence=IGI

GO:0009790 "embryo development" evidence=IGI

TAIR|locus:2020457 BRL1 "BRI1 like" [Arabidopsis thaliana (taxid:3702)]

 Score = 663 (238.4 bits), Expect = 3.3e-64, P = 3.3e-64
 Identities = 218/685 (31%), Positives = 325/685 (47%)

Query:    13 ITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLE 72
             +T L NL  L +     N  +    S  S+   L+ LDLS N+      +  +   SK  
Sbjct:    98 LTALPNLQNLYL---QGNYFSSGGDSSGSDCY-LQVLDLSSNSISDYSMVDYV--FSKCS 151

Query:    73 GLL-LSTRNNTLHVKTENWLPTS--QLIVLGLTKCNLNGSYPDFLLHQY--HLKYLDLSH 127
              L+ ++  NN L  K   + P+S   L  + L+   L+   P+  +  +   LKYLDL+H
Sbjct:   152 NLVSVNISNNKLVGKL-GFAPSSLQSLTTVDLSYNILSDKIPESFISDFPASLKYLDLTH 210

Query:   128 NKLVGNFPTWLLRNNPKLEVLLLKNNSFSGI---LQLPKAKHDFLHHLDISCNNFRGKLP 184
             N L G+F          L    L  N+ SG    + LP  K  FL  L+IS NN  GK+P
Sbjct:   211 NNLSGDFSDLSFGICGNLTFFSLSQNNLSGDKFPITLPNCK--FLETLNISRNNLAGKIP 268

Query:   185 HN--MGVILQKLMYMDISKNCFEGNIPYSAGEM-KELSLLDLSRNYFSGGLSQSVVTGCF 241
             +    G   Q L  + ++ N   G IP     + K L +LDLS N FSG L  S  T C 
Sbjct:   269 NGEYWGSF-QNLKQLSLAHNRLSGEIPPELSLLCKTLVILDLSGNTFSGELP-SQFTACV 326

Query:   242 SLELLDLSNNNFEGQFFSEYMN-LTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNM 300
              L+ L+L NN   G F +  ++ +T + +LY   NN SG +   L + ++L+VLD+S+N 
Sbjct:   327 WLQNLNLGNNYLSGDFLNTVVSKITGITYLYVAYNNISGSVPISLTNCSNLRVLDLSSNG 386

Query:   301 LSGHIPHWMGNFSSE--LEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSL 358
              +G++P    +  S   LE + ++ N+L G VP++L   + L+ +D+S N L+GPI   +
Sbjct:   387 FTGNVPSGFCSLQSSPVLEKILIANNYLSGTVPMELGKCKSLKTIDLSFNELTGPIPKEI 446

Query:   359 -NLSSVEHLSLQKNALNGLIP-GELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLL 416
               L ++  L +  N L G IP G   +   L TL L +N  +G IP  I+  +N+ ++ L
Sbjct:   447 WMLPNLSDLVMWANNLTGTIPEGVCVKGGNLETLILNNNLLTGSIPESISRCTNMIWISL 506

Query:   417 GGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPE 476
               N L G IP  +  L KLA++ L  N  SG++P    N  S  +  D  LN + L   +
Sbjct:   507 SSNRLTGKIPSGIGNLSKLAILQLGNNSLSGNVPRQLGNCKSL-IWLD--LNSNNLTG-D 562

Query:   477 LDEEI--EFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYE-------- 526
             L  E+  + G +     S   F   R     + R A    VE E     R E        
Sbjct:   563 LPGELASQAGLVMPGSVSGKQFAFVRNEGGTDCRGA-GGLVEFEGIRAERLERLPMVHSC 621

Query:   527 ----IYNGSNVNRVTG------LDLSCNQLTGEIPSDIGQLQAILAXXXXXXXXXGSIPE 576
                 IY+G  +   +        D+S N ++G IP   G +  +           G+IP+
Sbjct:   622 PATRIYSGMTMYTFSANGSMIYFDISYNAVSGFIPPGYGNMGYLQVLNLGHNRITGTIPD 681

Query:   577 SFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPDKGQFATFDESSY 636
             SF  LK I  LD+S+N L G +P  L +L+FLS  +VS NNL+G  P  GQ  TF  S Y
Sbjct:   682 SFGGLKAIGVLDLSHNNLQGYLPGSLGSLSFLSDLDVSNNNLTGPIPFGGQLTTFPVSRY 741

Query:   637 RGNPSLCAWLIQQKYSRTLKPTTTQ 661
               N  LC   ++   S   +P T++
Sbjct:   742 ANNSGLCGVPLRPCGSAPRRPITSR 766

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0009691 "cytokinin biosynthetic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00037625001 SubName- Full=Chromosome chr9 scaffold_90, whole genome shotgun sequence; (772 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	735
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-67
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-50
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	8e-47
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-18
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	7e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-05
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	1e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-04
COG5238	388	COG5238, RNA1, Ran GTPase-activating protein (RanG	2e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	3e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	0.001
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	0.002
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	0.002
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	0.002
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	0.003
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	0.003
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	0.003

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  238 bits (610), Expect = 3e-67
 Identities = 186/637 (29%), Positives = 283/637 (44%), Gaps = 95/637 (14%)

Query: 13  ITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLE 72
           ITC  N +R+  +D+S   ++G + S I  L  ++ ++LS+N   G  P           
Sbjct: 63  ITC-NNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIP----------- 110

Query: 73  GLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVG 132
                                                  D       L+YL+LS+N   G
Sbjct: 111 --------------------------------------DDIFTTSSSLRYLNLSNNNFTG 132

Query: 133 NFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQ 192
           + P   +   P LE L L NN  SG +         L  LD+  N   GK+P+++   L 
Sbjct: 133 SIPRGSI---PNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTN-LT 188

Query: 193 KLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNN 252
            L ++ ++ N   G IP   G+MK L  + L  N  SG +    + G  SL  LDL  NN
Sbjct: 189 SLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYE-IGGLTSLNHLDLVYNN 247

Query: 253 FEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNF 312
             G   S   NL  L++L+   N  SG I   + S   L  LD+S+N LSG IP  +   
Sbjct: 248 LTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQL 307

Query: 313 SSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSL----NLSSVEHLSL 368
            + LEIL +  N+  G +PV L +L RL++L +  N+ SG I  +L    NL+    L L
Sbjct: 308 QN-LEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTV---LDL 363

Query: 369 QKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQ 428
             N L G IP  L  S  L  L L  N+  G IP  +    +LR + L  N   G +P +
Sbjct: 364 STNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSE 423

Query: 429 LCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGN 488
             +L  +  +D+S N   G I     N   W + S  +L+ ++                 
Sbjct: 424 FTKLPLVYFLDISNNNLQGRI-----NSRKWDMPSLQMLSLAR----------------- 461

Query: 489 NRSSNTMFGMWRWLSALEKRAAID-ERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLT 547
               N  FG        ++   +D  R +   A+  +       +++ +  L LS N+L+
Sbjct: 462 ----NKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKL-----GSLSELMQLKLSENKLS 512

Query: 548 GEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNF 607
           GEIP ++   + +++L+LS+N LSG IP SFS + ++  LD+S N+L+G+IP  L  +  
Sbjct: 513 GEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVES 572

Query: 608 LSIFNVSYNNLSGRTPDKGQFATFDESSYRGNPSLCA 644
           L   N+S+N+L G  P  G F   + S+  GN  LC 
Sbjct: 573 LVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCG 609

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  188 bits (480), Expect = 4e-50
 Identities = 152/454 (33%), Positives = 228/454 (50%), Gaps = 12/454 (2%)

Query: 1   MNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMF 60
           ++L  N +   +   + + + LK+LD+  N L G +P+ ++NLTSLE+L L+ N   G  
Sbjct: 145 LDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQI 204

Query: 61  PLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHL 120
           P   L     L+ + L   N +  +  E    TS L  L L   NL G  P  L +  +L
Sbjct: 205 P-RELGQMKSLKWIYLGYNNLSGEIPYEIGGLTS-LNHLDLVYNNLTGPIPSSLGNLKNL 262

Query: 121 KYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFR 180
           +YL L  NKL G  P  +  +  KL  L L +NS SG +     +   L  L +  NNF 
Sbjct: 263 QYLFLYQNKLSGPIPPSIF-SLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFT 321

Query: 181 GKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGC 240
           GK+P  +   L +L  + +  N F G IP + G+   L++LDLS N  +G + + +   C
Sbjct: 322 GKIPVALTS-LPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGL---C 377

Query: 241 FSLEL--LDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISN 298
            S  L  L L +N+ EG+          LR +  ++N+FSG++         +  LDISN
Sbjct: 378 SSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISN 437

Query: 299 NMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSL 358
           N L G I     +  S L++LS+++N   G +P      +RL  LD+S N+ SG +   L
Sbjct: 438 NNLQGRINSRKWDMPS-LQMLSLARNKFFGGLP-DSFGSKRLENLDLSRNQFSGAVPRKL 495

Query: 359 -NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLG 417
            +LS +  L L +N L+G IP EL    KLV+L+L  N  SG+IP   +E   L  L L 
Sbjct: 496 GSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLS 555

Query: 418 GNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPP 451
            N L G IP  L  ++ L  +++S N   GS+P 
Sbjct: 556 QNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPS 589

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  179 bits (455), Expect = 8e-47
 Identities = 147/496 (29%), Positives = 221/496 (44%), Gaps = 70/496 (14%)

Query: 144 KLEVLLLKNNSFSGILQLP-------KAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMY 196
           +LE+LL    SF   +  P        +  D      I+CNN              +++ 
Sbjct: 30  ELELLL----SFKSSINDPLKYLSNWNSSADVCLWQGITCNNS------------SRVVS 73

Query: 197 MDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQ 256
           +D+S     G I  +   +  +  ++LS N  SG +   + T   SL  L+LSNNNF G 
Sbjct: 74  IDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGS 133

Query: 257 FFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSEL 316
                +    L  L   NN  SG+I + + S +SL+VLD+  N+L G IP+ + N +S L
Sbjct: 134 IPRGSIPN--LETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTS-L 190

Query: 317 EILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSL-NLSSVEHLSLQKNALNG 375
           E L+++ N L G +P +L  ++ L+ + +  N LSG I   +  L+S+ HL L  N L G
Sbjct: 191 EFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTG 250

Query: 376 LIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKL 435
            IP  L     L  L L  N  SG IP  I     L  L L  N L G IP+ + QLQ L
Sbjct: 251 PIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNL 310

Query: 436 AMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEI--EFGSLGN----N 489
            ++ L  N F+G IP    ++   +V         +L S +   EI    G   N    +
Sbjct: 311 EILHLFSNNFTGKIPVALTSLPRLQV--------LQLWSNKFSGEIPKNLGKHNNLTVLD 362

Query: 490 RSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNG-SNVNRVTGLDLSCNQLTG 548
            S+N + G                            EI  G  +   +  L L  N L G
Sbjct: 363 LSTNNLTG----------------------------EIPEGLCSSGNLFKLILFSNSLEG 394

Query: 549 EIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFL 608
           EIP  +G  +++  + L +NS SG +P  F+ L ++  LDIS N L G+I  +   +  L
Sbjct: 395 EIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSL 454

Query: 609 SIFNVSYNNLSGRTPD 624
            + +++ N   G  PD
Sbjct: 455 QMLSLARNKFFGGLPD 470

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 88.3 bits (219), Expect = 4e-18
 Identities = 39/88 (44%), Positives = 55/88 (62%)

Query: 536 VTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLT 595
           + GL L    L G IP+DI +L+ + ++NLS NS+ G+IP S  ++  +E LD+SYN   
Sbjct: 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFN 479

Query: 596 GQIPPQLTALNFLSIFNVSYNNLSGRTP 623
           G IP  L  L  L I N++ N+LSGR P
Sbjct: 480 GSIPESLGQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 61.0 bits (148), Expect = 1e-09
 Identities = 31/89 (34%), Positives = 51/89 (57%), Gaps = 2/89 (2%)

Query: 294 LDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGP 353
           L + N  L G IP+ +      L+ +++S N + GN+P  L ++  L +LD+S N  +G 
Sbjct: 423 LGLDNQGLRGFIPNDISKLR-HLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 354 IASSL-NLSSVEHLSLQKNALNGLIPGEL 381
           I  SL  L+S+  L+L  N+L+G +P  L
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 61.0 bits (148), Expect = 1e-09
 Identities = 33/89 (37%), Positives = 46/89 (51%), Gaps = 1/89 (1%)

Query: 246 LDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHI 305
           L L N    G   ++   L  L+ +    N+  G I   L S TSL+VLD+S N  +G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 306 PHWMGNFSSELEILSMSKNHLEGNVPVQL 334
           P  +G  +S L IL+++ N L G VP  L
Sbjct: 483 PESLGQLTS-LRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 59.4 bits (144), Expect = 4e-09
 Identities = 29/87 (33%), Positives = 49/87 (56%), Gaps = 1/87 (1%)

Query: 531 SNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDIS 590
           S +  +  ++LS N + G IP  +G + ++  L+LS NS +GSIPES   L  +  L+++
Sbjct: 439 SKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498

Query: 591 YNKLTGQIPPQLTALNFL-SIFNVSYN 616
            N L+G++P  L       + FN + N
Sbjct: 499 GNSLSGRVPAALGGRLLHRASFNFTDN 525

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 54.8 bits (132), Expect = 1e-07
 Identities = 29/88 (32%), Positives = 46/88 (52%)

Query: 363 VEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQ 422
           ++ L L    L G IP ++ +   L ++NL  N+  G IP  +   ++L  L L  N   
Sbjct: 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFN 479

Query: 423 GPIPDQLCQLQKLAMMDLSRNKFSGSIP 450
           G IP+ L QL  L +++L+ N  SG +P
Sbjct: 480 GSIPESLGQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 52.1 bits (125), Expect = 7e-07
 Identities = 31/96 (32%), Positives = 53/96 (55%), Gaps = 6/96 (6%)

Query: 163 KAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLD 222
                F+  L +     RG +P+++   L+ L  +++S N   GNIP S G +  L +LD
Sbjct: 414 TKGKWFIDGLGLDNQGLRGFIPNDISK-LRHLQSINLSGNSIRGNIPPSLGSITSLEVLD 472

Query: 223 LSRNYFSGGLSQSV--VTGCFSLELLDLSNNNFEGQ 256
           LS N F+G + +S+  +T   SL +L+L+ N+  G+
Sbjct: 473 LSYNSFNGSIPESLGQLT---SLRILNLNGNSLSGR 505

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 50.2 bits (120), Expect = 3e-06
 Identities = 24/61 (39%), Positives = 36/61 (59%)

Query: 1   MNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMF 60
           +NL  N I   +   L ++T L++LD+S N  NGS+P  +  LTSL  L+L+ N+  G  
Sbjct: 447 INLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRV 506

Query: 61  P 61
           P
Sbjct: 507 P 507

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 50.2 bits (120), Expect = 3e-06
 Identities = 30/91 (32%), Positives = 51/91 (56%), Gaps = 5/91 (5%)

Query: 148 LLLKNNSFSGIL--QLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFE 205
           L L N    G +   + K +H  L  +++S N+ RG +P ++G I   L  +D+S N F 
Sbjct: 423 LGLDNQGLRGFIPNDISKLRH--LQSINLSGNSIRGNIPPSLGSI-TSLEVLDLSYNSFN 479

Query: 206 GNIPYSAGEMKELSLLDLSRNYFSGGLSQSV 236
           G+IP S G++  L +L+L+ N  SG +  ++
Sbjct: 480 GSIPESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 49.4 bits (118), Expect = 6e-06
 Identities = 32/111 (28%), Positives = 49/111 (44%), Gaps = 23/111 (20%)

Query: 319 LSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIP 378
           L +    L G +P  ++ L  L+ +++S N + G I  SL                G I 
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSL----------------GSIT 466

Query: 379 GELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQL 429
                   L  L+L  N+F+G IP  + + ++LR L L GN L G +P  L
Sbjct: 467 S-------LEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 47.9 bits (114), Expect = 2e-05
 Identities = 30/83 (36%), Positives = 47/83 (56%), Gaps = 3/83 (3%)

Query: 390 LNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSI 449
           L L +    G IP+ I++  +L+ + L GN ++G IP  L  +  L ++DLS N F+GSI
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 450 PPCFANVLSWRVGSDDVLNGSKL 472
           P     + S R+ +   LNG+ L
Sbjct: 483 PESLGQLTSLRILN---LNGNSL 502

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 46.7 bits (111), Expect = 3e-05
 Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 5/72 (6%)

Query: 5   RNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSS 64
           R FI + +      L  L+ +++S N + G++P  + ++TSLE LDLS+N+F G  P  S
Sbjct: 431 RGFIPNDI----SKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIP-ES 485

Query: 65  LANHSKLEGLLL 76
           L   + L  L L
Sbjct: 486 LGQLTSLRILNL 497

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 46.0 bits (109), Expect = 6e-05
 Identities = 23/68 (33%), Positives = 39/68 (57%)

Query: 243 LELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLS 302
           L+ ++LS N+  G       ++T L  L    N+F+G I + L   TSL++L+++ N LS
Sbjct: 444 LQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLS 503

Query: 303 GHIPHWMG 310
           G +P  +G
Sbjct: 504 GRVPAALG 511

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 45.0 bits (106), Expect = 1e-04
 Identities = 45/154 (29%), Positives = 73/154 (47%), Gaps = 11/154 (7%)

Query: 241 FSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNN- 299
            +L+ LDLS+N  E    S   NL  L++L    N+ S  +   L + ++L  LD+S N 
Sbjct: 140 SNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNK 197

Query: 300 --MLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASS 357
              L   I        S LE L +S N +   +   L+NL+ L  L++S N+L     S 
Sbjct: 198 ISDLPPEI-----ELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLEDLPESI 251

Query: 358 LNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLN 391
            NLS++E L L  N ++ +       + + + L+
Sbjct: 252 GNLSNLETLDLSNNQISSISSLGSLTNLRELDLS 285

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 39.8 bits (94), Expect = 2e-04
 Identities = 22/55 (40%), Positives = 26/55 (47%)

Query: 2  NLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNF 56
          +L  N +        K L  LK+LD+S N L    P   S L SL  LDLS NN 
Sbjct: 6  DLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|227563 COG5238, RNA1, Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

 Score = 44.1 bits (104), Expect = 2e-04
 Identities = 52/211 (24%), Positives = 81/211 (38%), Gaps = 37/211 (17%)

Query: 214 EMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFE 273
            M EL  +DLS N       + +     ++   +L   NF   F        R +   + 
Sbjct: 28  MMDELVEVDLSGNTIGTEAMEELCNVIANVR--NLRVVNFSDAF------TGRDKDELYS 79

Query: 274 NNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNF---SSELEILSMSKNHL---- 326
           N     K    LL    LQ +D+S+N      P  +G+    S++L  L ++ N L    
Sbjct: 80  NLVMLLKA---LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIA 136

Query: 327 ---------EGNVPVQLNNLERLRILDISENRL-SGPIA-SSLNLSSVEHLSLQKNALNG 375
                          +  +  +L ++    NRL +G    S+  L S E+L   K   NG
Sbjct: 137 GGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNG 196

Query: 376 LIPG--------ELFRSCKLVTLNLRDNTFS 398
           + P          LF S  L  L+L+DNTF+
Sbjct: 197 IRPEGVTMLAFLGLFYSHSLEVLDLQDNTFT 227

Length = 388

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 39.1 bits (92), Expect = 3e-04
 Identities = 24/56 (42%), Positives = 32/56 (57%)

Query: 539 LDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKL 594
           LDLS N+LT         L  +  L+LS N+L+   PE+FS L  + SLD+S N L
Sbjct: 5   LDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 42.1 bits (99), Expect = 0.001
 Identities = 32/111 (28%), Positives = 48/111 (43%), Gaps = 26/111 (23%)

Query: 25  LDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLH 84
           L + +  L G +P+ IS L  L+ ++LS N+  G  P  SL + + LE            
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPP-SLGSITSLE------------ 469

Query: 85  VKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFP 135
                        VL L+  + NGS P+ L     L+ L+L+ N L G  P
Sbjct: 470 -------------VLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 41.3 bits (97), Expect = 0.002
 Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 1/90 (1%)

Query: 99  LGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGI 158
           LGL    L G  P+ +    HL+ ++LS N + GN P   L +   LEVL L  NSF+G 
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPP-SLGSITSLEVLDLSYNSFNGS 481

Query: 159 LQLPKAKHDFLHHLDISCNNFRGKLPHNMG 188
           +     +   L  L+++ N+  G++P  +G
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 40.8 bits (96), Expect = 0.002
 Identities = 45/191 (23%), Positives = 68/191 (35%), Gaps = 33/191 (17%)

Query: 283 DGLLSSTSLQVLDISNNMLSGHIPHWMGNF--SSELEILSMSKNHLEGN-----VPVQLN 335
            GL     LQ LD+S+N L       + +   SS L+ L ++ N L             +
Sbjct: 75  QGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKD 134

Query: 336 NLERLRILDISENRLSG----PIASSL-NLSSVEHLSLQKNALNG-----LIPGELFRSC 385
               L  L +  NRL G     +A +L     ++ L+L  N +       L  G L  +C
Sbjct: 135 LPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEG-LKANC 193

Query: 386 KLVTLNLRDNTF----SGRIPHQINEHSNLRFLLLGGN--------HLQGPIPDQLCQLQ 433
            L  L+L +N      +  +   +    +L  L LG N         L   +      L 
Sbjct: 194 NLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLL 253

Query: 434 KLAMMDLSRNK 444
            L    LS N 
Sbjct: 254 TL---SLSCND 261

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 40.4 bits (95), Expect = 0.002
 Identities = 53/250 (21%), Positives = 79/250 (31%), Gaps = 62/250 (24%)

Query: 218 LSLLDLSRNYFSGGLSQSV--VTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENN 275
           L  LDLS N         +  +    SL+ L L+NN               LR L     
Sbjct: 83  LQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGD---------RGLRLL----- 128

Query: 276 NFSGKIKDGLLSST-SLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQL 334
                   GL     +L+ L +  N L G         S E    ++  N          
Sbjct: 129 ------AKGLKDLPPALEKLVLGRNRLEGA--------SCEALAKALRAN---------- 164

Query: 335 NNLERLRILDISENRLSGPIASSL-----NLSSVEHLSLQKNALN---GLIPGELFRS-C 385
                L+ L+++ N +      +L        ++E L L  N L         E   S  
Sbjct: 165 ---RDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLK 221

Query: 386 KLVTLNLRDNTFSGRI-----PHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQK----LA 436
            L  LNL DN  +           ++ + +L  L L  N +       L ++      L 
Sbjct: 222 SLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLL 281

Query: 437 MMDLSRNKFS 446
            +DL  NKF 
Sbjct: 282 ELDLRGNKFG 291

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 40.3 bits (94), Expect = 0.003
 Identities = 29/80 (36%), Positives = 50/80 (62%), Gaps = 3/80 (3%)

Query: 539 LDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQI 598
           LDLS N++   +PS +  L  +  L+LS N LS  +P+  SNL  + +LD+S NK++  +
Sbjct: 145 LDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DL 201

Query: 599 PPQLTALNFLSIFNVSYNNL 618
           PP++  L+ L   ++S N++
Sbjct: 202 PPEIELLSALEELDLSNNSI 221

Length = 394

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 40.3 bits (94), Expect = 0.003
 Identities = 43/138 (31%), Positives = 66/138 (47%), Gaps = 7/138 (5%)

Query: 1   MNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMF 60
           ++L  N I   L++ L NL  L  L++S+N+L   LP  I NL++LE LDLS+N    + 
Sbjct: 214 LDLSNNSI-IELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQ---IS 268

Query: 61  PLSSLANHSKLEGLLLSTRN--NTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQY 118
            +SSL + + L  L LS  +  N L +     L    L+ L LT   L       LL+  
Sbjct: 269 SISSLGSLTNLRELDLSGNSLSNALPLIALLLLLLELLLNLLLTLKALELKLNSILLNNN 328

Query: 119 HLKYLDLSHNKLVGNFPT 136
            L   + S  + +    +
Sbjct: 329 ILSNGETSSPEALSILES 346

Length = 394

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 35.5 bits (83), Expect = 0.003
 Identities = 22/45 (48%), Positives = 30/45 (66%), Gaps = 2/45 (4%)

Query: 20 TRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSS 64
          T L+ LD+S+NQ+   LP  +SNL +LE LDLS N    + PLS+
Sbjct: 1  TNLETLDLSNNQIT-DLPP-LSNLPNLETLDLSGNKITDLSPLSN 43

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	735
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	100.0
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.93
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.91
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.91
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.9
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.88
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.86
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.81
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.8
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.74
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.72
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.71
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.68
PLN03150	623	hypothetical protein; Provisional	99.61
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.39
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.3
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.26
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.21
PLN03150	623	hypothetical protein; Provisional	99.19
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.16
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.16
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.14
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.13
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.1
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.04
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.03
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.96
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.94
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.88
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.82
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.77
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.77
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.71
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.61
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.56
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.5
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.39
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.38
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.36
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.26
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.24
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.24
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.07
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.99
PRK15386	426	type III secretion protein GogB; Provisional	97.96
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.96
KOG4341	483	consensus F-box protein containing LRR [General fu	97.93
KOG4341	483	consensus F-box protein containing LRR [General fu	97.71
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.65
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.6
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.6
PRK15386	426	type III secretion protein GogB; Provisional	97.58
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.53
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.4
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.29
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.54
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.46
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.36
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.31
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.28
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.95
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.54
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.35
KOG4308	478	consensus LRR-containing protein [Function unknown	92.91
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	92.88
KOG0473	326	consensus Leucine-rich repeat protein [Function un	92.73
KOG4308	478	consensus LRR-containing protein [Function unknown	92.64
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	92.1
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	90.75
smart00370	26	LRR Leucine-rich repeats, outliers.	90.75
smart00370	26	LRR Leucine-rich repeats, outliers.	90.24
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	90.24
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	87.22
KOG0473	326	consensus Leucine-rich repeat protein [Function un	84.22
KOG3864	221	consensus Uncharacterized conserved protein [Funct	83.41
KOG3864	221	consensus Uncharacterized conserved protein [Funct	81.05
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	80.77

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=3.1e-67  Score=627.48  Aligned_cols=543  Identities=34%  Similarity=0.507  Sum_probs=510.4

Q ss_pred             CCCCCEEeCCCCcCCCCcchhhhCCCCCCEEeCCCCcccccCChhhhhcCCCCCeeecccccccccccCCCCCCCCCeeE
Q 004704           19 LTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIV   98 (735)
Q Consensus        19 l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~   98 (735)
                      ..+++.|||++|.+++.+|.+|..+++|++|+|++|++++.+|...+.++++|++|++++|++.+.++.   ..+++|++
T Consensus        68 ~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~---~~l~~L~~  144 (968)
T PLN00113         68 SSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR---GSIPNLET  144 (968)
T ss_pred             CCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc---cccCCCCE
Confidence            457999999999999999999999999999999999999999977778999999999999998776664   35789999


Q ss_pred             EEeeCCCCCCCCchhhhCCCCCCEEEccCCcCcccCchHHHhCCCCCcEEECcCCcCcccCcCCcCCCCCcCEEEccCCc
Q 004704           99 LGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNN  178 (735)
Q Consensus        99 L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~  178 (735)
                      |+|++|.+.+.+|..++++++|++|++++|.+.+.+|..+. ++++|++|++++|.+.+..|..+..+++|++|++++|.
T Consensus       145 L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~  223 (968)
T PLN00113        145 LDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLT-NLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNN  223 (968)
T ss_pred             EECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhh-hCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCc
Confidence            99999999999999999999999999999999988998764 89999999999999999999999999999999999999


Q ss_pred             CCCcCChhHHHhcccCcEEECcCCcCCCCCCcccCCCCCCCEEECCCccccCccchhhhhCCCCCCEEEccCCCCCCcCc
Q 004704          179 FRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFF  258 (735)
Q Consensus       179 l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  258 (735)
                      +.+.+|..+.. +++|++|++++|.+.+.+|..++++++|++|++++|.+.+.+|..+ ..+++|++|++++|.+.+..|
T Consensus       224 l~~~~p~~l~~-l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~Ls~n~l~~~~p  301 (968)
T PLN00113        224 LSGEIPYEIGG-LTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSI-FSLQKLISLDLSDNSLSGEIP  301 (968)
T ss_pred             cCCcCChhHhc-CCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhH-hhccCcCEEECcCCeeccCCC
Confidence            99999998876 8999999999999999999999999999999999999998888776 479999999999999999999


Q ss_pred             ccccCCCCCCEEEccccccCccccccccCCCCCCEEEeeCCccCCCCCchhhhhcccCcEEEcCCCcCCCCCCccCCCCC
Q 004704          259 SEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLE  338 (735)
Q Consensus       259 ~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~  338 (735)
                      ..+.++++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+.+|..++.+.. |+.|++++|++.+.+|..+..++
T Consensus       302 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~-L~~L~Ls~n~l~~~~p~~~~~~~  380 (968)
T PLN00113        302 ELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNN-LTVLDLSTNNLTGEIPEGLCSSG  380 (968)
T ss_pred             hhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCC-CcEEECCCCeeEeeCChhHhCcC
Confidence            99999999999999999999999999999999999999999999999999999877 99999999999999999999999


Q ss_pred             CCCEEEcccCCCCccCCCcc-CCCCccEEEccCCcccccCcccccCCCCCcEEeCCCCcccccCChhhhCCCCccEEEcc
Q 004704          339 RLRILDISENRLSGPIASSL-NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLG  417 (735)
Q Consensus       339 ~L~~L~L~~n~l~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~  417 (735)
                      +|+.|++++|++.+..+..+ .+++|+.|++++|.+++..|..+..+++|+.|++++|.+++.+|..+..+++|+.|+++
T Consensus       381 ~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~  460 (968)
T PLN00113        381 NLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLA  460 (968)
T ss_pred             CCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECc
Confidence            99999999999998888776 89999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcCCCCCchhhhcCCCCCEEECcCCcCCCCCCchhhcccccccccCCccCCCCCCCcccchhhhcccCCCCCCCccccc
Q 004704          418 GNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFG  497 (735)
Q Consensus       418 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  497 (735)
                      +|++.+.+|..+ ..++|+.|++++|++++.+|..+.++                                         
T Consensus       461 ~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l-----------------------------------------  498 (968)
T PLN00113        461 RNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSL-----------------------------------------  498 (968)
T ss_pred             CceeeeecCccc-ccccceEEECcCCccCCccChhhhhh-----------------------------------------
Confidence            999998888765 46899999999999999888776543                                         


Q ss_pred             hhhhhhhhhhhhccccceeEEEEeccccccccCCcccccceEECCCCcccCCCCccccccccCCeEeCCCCcCcccCccc
Q 004704          498 MWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPES  577 (735)
Q Consensus       498 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~  577 (735)
                                                          ++|+.|+|++|++.+.+|..++.+++|++|+|++|.+++.+|..
T Consensus       499 ------------------------------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~  542 (968)
T PLN00113        499 ------------------------------------SELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPAS  542 (968)
T ss_pred             ------------------------------------hccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChh
Confidence                                                56788999999999999999999999999999999999999999


Q ss_pred             ccCcCCCCEEeCCCCcccccCCccccCCCCCCeEEcccCcCcccCCCCCCCCccCCcccCCCCCCCCcc
Q 004704          578 FSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPDKGQFATFDESSYRGNPSLCAWL  646 (735)
Q Consensus       578 ~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~gN~~lc~~~  646 (735)
                      |+++++|+.|||++|++++.+|..+..+++|++|++++|+++|.+|..+++.++...+|.|||.+|+..
T Consensus       543 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~  611 (968)
T PLN00113        543 FSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGD  611 (968)
T ss_pred             HhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCccccCCc
Confidence            999999999999999999999999999999999999999999999999999999999999999999853

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=4e-61  Score=574.91  Aligned_cols=530  Identities=33%  Similarity=0.496  Sum_probs=488.9

Q ss_pred             CcCCCCCCCCccccccCCCCCCCEEeCCCCcCCCCcchhhh-CCCCCCEEeCCCCcccccCChhhhhcCCCCCeeecccc
Q 004704            1 MNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVIS-NLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTR   79 (735)
Q Consensus         1 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~~   79 (735)
                      |||++|.++|.++..|..+++|++|+|++|++++.+|..+. ++++|++|+|++|++++.+|.   ..+++|++|++++|
T Consensus        74 L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~---~~l~~L~~L~Ls~n  150 (968)
T PLN00113         74 IDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR---GSIPNLETLDLSNN  150 (968)
T ss_pred             EEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc---cccCCCCEEECcCC
Confidence            58899999999999999999999999999999988888654 999999999999999988883   56899999999999


Q ss_pred             cccccccCCCCCCCCCeeEEEeeCCCCCCCCchhhhCCCCCCEEEccCCcCcccCchHHHhCCCCCcEEECcCCcCcccC
Q 004704           80 NNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGIL  159 (735)
Q Consensus        80 ~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~  159 (735)
                      .+.+..+. .+..+++|++|++++|.+.+.+|..+.++++|++|++++|.+++.+|..+. ++++|++|++++|.+++..
T Consensus       151 ~~~~~~p~-~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~  228 (968)
T PLN00113        151 MLSGEIPN-DIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELG-QMKSLKWIYLGYNNLSGEI  228 (968)
T ss_pred             cccccCCh-HHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHc-CcCCccEEECcCCccCCcC
Confidence            88766554 377899999999999999999999999999999999999999988998764 8999999999999999999


Q ss_pred             cCCcCCCCCcCEEEccCCcCCCcCChhHHHhcccCcEEECcCCcCCCCCCcccCCCCCCCEEECCCccccCccchhhhhC
Q 004704          160 QLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTG  239 (735)
Q Consensus       160 ~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~  239 (735)
                      |..+..+++|++|++++|.+++.+|..+.. +++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+ ..
T Consensus       229 p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~-~~  306 (968)
T PLN00113        229 PYEIGGLTSLNHLDLVYNNLTGPIPSSLGN-LKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELV-IQ  306 (968)
T ss_pred             ChhHhcCCCCCEEECcCceeccccChhHhC-CCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhH-cC
Confidence            999999999999999999999899988876 8999999999999999999999999999999999999998877665 67


Q ss_pred             CCCCCEEEccCCCCCCcCcccccCCCCCCEEEccccccCccccccccCCCCCCEEEeeCCccCCCCCchhhhhcccCcEE
Q 004704          240 CFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEIL  319 (735)
Q Consensus       240 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L  319 (735)
                      +++|++|++++|.+.+..|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+++.+|..+..... |+.|
T Consensus       307 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~-L~~L  385 (968)
T PLN00113        307 LQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGN-LFKL  385 (968)
T ss_pred             CCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCC-CCEE
Confidence            999999999999999999999999999999999999999999999999999999999999999999999988877 9999


Q ss_pred             EcCCCcCCCCCCccCCCCCCCCEEEcccCCCCccCCCcc-CCCCccEEEccCCcccccCcccccCCCCCcEEeCCCCccc
Q 004704          320 SMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSL-NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFS  398 (735)
Q Consensus       320 ~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~  398 (735)
                      ++++|.+.+.+|..+..+++|+.|++++|++++..+..+ .++.|+.|++++|.+.+.++..+..+++|+.|++++|++.
T Consensus       386 ~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~  465 (968)
T PLN00113        386 ILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFF  465 (968)
T ss_pred             ECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceee
Confidence            999999999999999999999999999999998888777 8999999999999999999998999999999999999999


Q ss_pred             ccCChhhhCCCCccEEEccCCcCCCCCchhhhcCCCCCEEECcCCcCCCCCCchhhcccccccccCCccCCCCCCCcccc
Q 004704          399 GRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELD  478 (735)
Q Consensus       399 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~  478 (735)
                      +.+|..+. .++|+.|++++|++.+.+|..+..+++|+.|++++|++++.+|..+.++                      
T Consensus       466 ~~~p~~~~-~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l----------------------  522 (968)
T PLN00113        466 GGLPDSFG-SKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSC----------------------  522 (968)
T ss_pred             eecCcccc-cccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCc----------------------
Confidence            88887664 5899999999999999999999999999999999999999999876553                      


Q ss_pred             hhhhcccCCCCCCCccccchhhhhhhhhhhhccccceeEEEEeccccccccCCcccccceEECCCCcccCCCCccccccc
Q 004704          479 EEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQ  558 (735)
Q Consensus       479 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~  558 (735)
                                                                             ++|+.|+|++|.++|.+|..++.++
T Consensus       523 -------------------------------------------------------~~L~~L~Ls~N~l~~~~p~~~~~l~  547 (968)
T PLN00113        523 -------------------------------------------------------KKLVSLDLSHNQLSGQIPASFSEMP  547 (968)
T ss_pred             -------------------------------------------------------cCCCEEECCCCcccccCChhHhCcc
Confidence                                                                   5688899999999999999999999


Q ss_pred             cCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccCCccccCCCCCCeEEcccCc
Q 004704          559 AILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNN  617 (735)
Q Consensus       559 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~  617 (735)
                      +|+.|+|++|++++.+|..+.++++|+.|++++|++.|.+|.. .....+....+.+|+
T Consensus       548 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~-~~~~~~~~~~~~~n~  605 (968)
T PLN00113        548 VLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPST-GAFLAINASAVAGNI  605 (968)
T ss_pred             cCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCc-chhcccChhhhcCCc
Confidence            9999999999999999999999999999999999999999965 333344455566666

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=1e-43  Score=343.75  Aligned_cols=478  Identities=27%  Similarity=0.397  Sum_probs=311.5

Q ss_pred             CCCCCCCEEeCCCCcCCCCcchhhhCCCCCCEEeCCCCcccccCChhhhhcCCCCCeeecccccccccccCCCCCCCCCe
Q 004704           17 KNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQL   96 (735)
Q Consensus        17 ~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L   96 (735)
                      ..-..|+.|++++|.+. .+-+.+.++..|.+|++++|+++ ..| .+++.+..++.++.++|...              
T Consensus        42 W~qv~l~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n~l~-~lp-~aig~l~~l~~l~vs~n~ls--------------  104 (565)
T KOG0472|consen   42 WEQVDLQKLILSHNDLE-VLREDLKNLACLTVLNVHDNKLS-QLP-AAIGELEALKSLNVSHNKLS--------------  104 (565)
T ss_pred             hhhcchhhhhhccCchh-hccHhhhcccceeEEEeccchhh-hCC-HHHHHHHHHHHhhcccchHh--------------
Confidence            34456777788888777 44556777788888888888776 455 35666766666666655432              


Q ss_pred             eEEEeeCCCCCCCCchhhhCCCCCCEEEccCCcCcccCchHHHhCCCCCcEEECcCCcCcccCcCCcCCCCCcCEEEccC
Q 004704           97 IVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISC  176 (735)
Q Consensus        97 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~  176 (735)
                                  .+|+.+..+.+++.++.++|.+. .+|+.++ .+..++.++..+|+++.. |..+..+.++..+++.+
T Consensus       105 ------------~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~-~~~~l~dl~~~~N~i~sl-p~~~~~~~~l~~l~~~~  169 (565)
T KOG0472|consen  105 ------------ELPEQIGSLISLVKLDCSSNELK-ELPDSIG-RLLDLEDLDATNNQISSL-PEDMVNLSKLSKLDLEG  169 (565)
T ss_pred             ------------hccHHHhhhhhhhhhhcccccee-ecCchHH-HHhhhhhhhccccccccC-chHHHHHHHHHHhhccc
Confidence                        34555555555555555555555 4555443 455555555555555544 34444555555666666


Q ss_pred             CcCCCcCChhHHHhcccCcEEECcCCcCCCCCCcccCCCCCCCEEECCCccccCccchhhhhCCCCCCEEEccCCCCCCc
Q 004704          177 NNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQ  256 (735)
Q Consensus       177 n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~  256 (735)
                      |+++ ..|+.... ++.|++||...|.+. .+|..++.+.+|..|++.+|++. .+|.  |.+|+.|++++++.|.+.-.
T Consensus       170 n~l~-~l~~~~i~-m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lPe--f~gcs~L~Elh~g~N~i~~l  243 (565)
T KOG0472|consen  170 NKLK-ALPENHIA-MKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLPE--FPGCSLLKELHVGENQIEML  243 (565)
T ss_pred             cchh-hCCHHHHH-HHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCCC--CCccHHHHHHHhcccHHHhh
Confidence            6665 44444444 456666666665554 55666666666666666666665 4552  34566666666666666532


Q ss_pred             CcccccCCCCCCEEEccccccCccccccccCCCCCCEEEeeCCccCCCCCchhhhhcccCcEEEcCCCcCCCCCCccCCC
Q 004704          257 FFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNN  336 (735)
Q Consensus       257 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~  336 (735)
                      ..+...+++++..||+.+|+++ ..|+.+.-+++|++||+++|.++ .+|..++++ . |+.|-+.+|.+..+-.+.+.+
T Consensus       244 pae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-h-L~~L~leGNPlrTiRr~ii~~  319 (565)
T KOG0472|consen  244 PAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-H-LKFLALEGNPLRTIRREIISK  319 (565)
T ss_pred             HHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc-e-eeehhhcCCchHHHHHHHHcc
Confidence            2233335666666666666665 55555556666666666666665 555556655 3 666666666554211110000


Q ss_pred             C--CCCCEEE-------cccC---------CCCccCCCccCCCCccEEEccCCcccccCcccccCCCC---CcEEeCCCC
Q 004704          337 L--ERLRILD-------ISEN---------RLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCK---LVTLNLRDN  395 (735)
Q Consensus       337 l--~~L~~L~-------L~~n---------~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~---L~~L~l~~n  395 (735)
                      -  .-|++|.       ++..         ...+..+......+.+.|++++-+++.. |...+....   ....+++.|
T Consensus       320 gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~V-PdEVfea~~~~~Vt~VnfskN  398 (565)
T KOG0472|consen  320 GTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLV-PDEVFEAAKSEIVTSVNFSKN  398 (565)
T ss_pred             cHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccC-CHHHHHHhhhcceEEEecccc
Confidence            0  0011110       0100         0111222222566788888888888844 555444333   788999999


Q ss_pred             cccccCChhhhCCCCccE-EEccCCcCCCCCchhhhcCCCCCEEECcCCcCCCCCCchhhcccccccccCCccCCCCCCC
Q 004704          396 TFSGRIPHQINEHSNLRF-LLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNS  474 (735)
Q Consensus       396 ~l~~~~~~~~~~l~~L~~-L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~  474 (735)
                      ++. ++|..+..+..+.+ +.+++|.+ +.+|..++.+++|..|++++|.+. .+|..++.+                  
T Consensus       399 qL~-elPk~L~~lkelvT~l~lsnn~i-sfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~l------------------  457 (565)
T KOG0472|consen  399 QLC-ELPKRLVELKELVTDLVLSNNKI-SFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSL------------------  457 (565)
T ss_pred             hHh-hhhhhhHHHHHHHHHHHhhcCcc-ccchHHHHhhhcceeeecccchhh-hcchhhhhh------------------
Confidence            998 78888877766655 44555555 488999999999999999999886 777766543                  


Q ss_pred             cccchhhhcccCCCCCCCccccchhhhhhhhhhhhccccceeEEEEeccccccccCCcccccceEECCCCcccCCCCccc
Q 004704          475 PELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDI  554 (735)
Q Consensus       475 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l  554 (735)
                                                                                 ..|+.||+|.|+|. .+|..+
T Consensus       458 -----------------------------------------------------------v~Lq~LnlS~NrFr-~lP~~~  477 (565)
T KOG0472|consen  458 -----------------------------------------------------------VRLQTLNLSFNRFR-MLPECL  477 (565)
T ss_pred             -----------------------------------------------------------hhhheecccccccc-cchHHH
Confidence                                                                       35788999999999 899999


Q ss_pred             cccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccCCccccCCCCCCeEEcccCcCc
Q 004704          555 GQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLS  619 (735)
Q Consensus       555 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~  619 (735)
                      ..+..++.+-.++|++....|+.+.+|.+|..|||.+|.+. .+|..++++++|++|++++|++.
T Consensus       478 y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  478 YELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             hhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence            99999999999999999888888999999999999999999 89999999999999999999998

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=7e-40  Score=330.92  Aligned_cols=391  Identities=23%  Similarity=0.235  Sum_probs=329.5

Q ss_pred             CCEEeCCCCcCCCCcchhhhCC--CCCCEEeCCCCcccccCChhhhhcCCCCCeeecccccccccccCCCCCCCCCeeEE
Q 004704           22 LKILDISSNQLNGSLPSVISNL--TSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVL   99 (735)
Q Consensus        22 L~~L~Ls~n~i~~~~p~~~~~l--~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L   99 (735)
                      -+.||.+++.+..+.-..+.+.  +.-+.||+|+|+++ .+....|.++++|+++.+..|.+. .+|.. .....+|+.|
T Consensus        54 ~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~-~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f-~~~sghl~~L  130 (873)
T KOG4194|consen   54 TRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLS-HIDFEFFYNLPNLQEVNLNKNELT-RIPRF-GHESGHLEKL  130 (873)
T ss_pred             ceeeecCccccccccccccCCcCccceeeeeccccccc-cCcHHHHhcCCcceeeeeccchhh-hcccc-cccccceeEE
Confidence            3556777777764322223222  23456888888886 444466788888888888766543 33321 2344579999


Q ss_pred             EeeCCCCCCCCchhhhCCCCCCEEEccCCcCcccCchHHHhCCCCCcEEECcCCcCcccCcCCcCCCCCcCEEEccCCcC
Q 004704          100 GLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNF  179 (735)
Q Consensus       100 ~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l  179 (735)
                      +|.+|.|+..-.+.+..++.|+.||||.|.|+ .+|..-|..-.++++|+|++|.|+.+....|..+.+|.+|.|+.|++
T Consensus       131 ~L~~N~I~sv~se~L~~l~alrslDLSrN~is-~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNri  209 (873)
T KOG4194|consen  131 DLRHNLISSVTSEELSALPALRSLDLSRNLIS-EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRI  209 (873)
T ss_pred             eeeccccccccHHHHHhHhhhhhhhhhhchhh-cccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcc
Confidence            99999999998999999999999999999998 88877666667999999999999999999999999999999999999


Q ss_pred             CCcCChhHHHhcccCcEEECcCCcCCCCCCcccCCCCCCCEEECCCccccCccchhhhhCCCCCCEEEccCCCCCCcCcc
Q 004704          180 RGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFS  259 (735)
Q Consensus       180 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  259 (735)
                      + .+|...|+.+++|+.|+|..|.+.-.-...|.++++|+.|.+..|.+. .+....|-++.++++|+|+.|+++..-..
T Consensus       210 t-tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~-kL~DG~Fy~l~kme~l~L~~N~l~~vn~g  287 (873)
T KOG4194|consen  210 T-TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDIS-KLDDGAFYGLEKMEHLNLETNRLQAVNEG  287 (873)
T ss_pred             c-ccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcc-cccCcceeeecccceeecccchhhhhhcc
Confidence            9 999999998999999999999997444667899999999999999998 77788888999999999999999988888


Q ss_pred             cccCCCCCCEEEccccccCccccccccCCCCCCEEEeeCCccCCCCCchhhhhcccCcEEEcCCCcCCCCCCccCCCCCC
Q 004704          260 EYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLER  339 (735)
Q Consensus       260 ~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~  339 (735)
                      ++.+++.|+.|++++|.|....++++...++|+.|+|++|+++..-+..+..+.. |++|+|++|.++.....+|..+++
T Consensus       288 ~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~-Le~LnLs~Nsi~~l~e~af~~lss  366 (873)
T KOG4194|consen  288 WLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQ-LEELNLSHNSIDHLAEGAFVGLSS  366 (873)
T ss_pred             cccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHH-hhhhcccccchHHHHhhHHHHhhh
Confidence            8999999999999999999888999999999999999999999555666777766 999999999999777788999999


Q ss_pred             CCEEEcccCCCCccCCCc---c-CCCCccEEEccCCcccccCcccccCCCCCcEEeCCCCcccccCChhhhCCCCccEEE
Q 004704          340 LRILDISENRLSGPIASS---L-NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLL  415 (735)
Q Consensus       340 L~~L~L~~n~l~~~~~~~---~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  415 (735)
                      |++|||++|.+++.+.+.   + ++++|+.|++.+|++..+...+|.++.+|+.|||.+|.|...-|.+|..+ .|++|.
T Consensus       367 L~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv  445 (873)
T KOG4194|consen  367 LHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELV  445 (873)
T ss_pred             hhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhh
Confidence            999999999998766543   3 78999999999999988878889999999999999999988888888888 888887


Q ss_pred             ccCCc
Q 004704          416 LGGNH  420 (735)
Q Consensus       416 L~~n~  420 (735)
                      +..-.
T Consensus       446 ~nSss  450 (873)
T KOG4194|consen  446 MNSSS  450 (873)
T ss_pred             hcccc
Confidence            76533

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=1.2e-39  Score=329.13  Aligned_cols=365  Identities=23%  Similarity=0.289  Sum_probs=282.4

Q ss_pred             cCEEEccCCcCCCcCChhHHHhcccCcEEECcCCcCCCCCCcccCCCCCCCEEECCCccccCccchhhhhCCCCCCEEEc
Q 004704          169 LHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDL  248 (735)
Q Consensus       169 L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L  248 (735)
                      -++|++++|.+. .+....+..+++|+++++.+|.++ .+|.......+|+.|+|.+|.|+ .+..+-...++.|++|||
T Consensus        80 t~~LdlsnNkl~-~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~-sv~se~L~~l~alrslDL  156 (873)
T KOG4194|consen   80 TQTLDLSNNKLS-HIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLIS-SVTSEELSALPALRSLDL  156 (873)
T ss_pred             eeeeeccccccc-cCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccc-cccHHHHHhHhhhhhhhh
Confidence            455777777776 455555555777777777777776 67766666667888888888777 555555566778888888


Q ss_pred             cCCCCCCcCcccccCCCCCCEEEccccccCccccccccCCCCCCEEEeeCCccCCCCCchhhh-hcccCcEEEcCCCcCC
Q 004704          249 SNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGN-FSSELEILSMSKNHLE  327 (735)
Q Consensus       249 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~-~~~~L~~L~l~~n~l~  327 (735)
                      +.|.|+......|..-.++++|+|++|.|+....+.|..+.+|..|.|+.|+++ .+|...++ ++. |+.|+|..|+|.
T Consensus       157 SrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~-L~~LdLnrN~ir  234 (873)
T KOG4194|consen  157 SRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT-TLPQRSFKRLPK-LESLDLNRNRIR  234 (873)
T ss_pred             hhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccc-ccCHHHhhhcch-hhhhhcccccee
Confidence            888887666666776778888888888888766777888888888888888888 56655444 666 888888888887


Q ss_pred             CCCCccCCCCCCCCEEEcccCCCCccCCCcc-CCCCccEEEccCCcccccCcccccCCCCCcEEeCCCCcccccCChhhh
Q 004704          328 GNVPVQLNNLERLRILDISENRLSGPIASSL-NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQIN  406 (735)
Q Consensus       328 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~  406 (735)
                      -.-.-.|.++++|+.|.+..|.+...-...| ++.++++|+|..|++...-.+++.++++|+.|++++|.|...-++.+.
T Consensus       235 ive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Ws  314 (873)
T KOG4194|consen  235 IVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWS  314 (873)
T ss_pred             eehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhh
Confidence            4446678888888888888888887777666 888888888888888888888888888999999999988877788888


Q ss_pred             CCCCccEEEccCCcCCCCCchhhhcCCCCCEEECcCCcCCCCCCchhhcccccccccCCccCCCCCCCcccchhhhcccC
Q 004704          407 EHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSL  486 (735)
Q Consensus       407 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  486 (735)
                      -+++|++|+|++|+++...+..|..+..|++|.|++|+++..-...|.                                
T Consensus       315 ftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~--------------------------------  362 (873)
T KOG4194|consen  315 FTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFV--------------------------------  362 (873)
T ss_pred             hcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHH--------------------------------
Confidence            888899999999998877788888888888999998888632222221                                


Q ss_pred             CCCCCCccccchhhhhhhhhhhhccccceeEEEEeccccccccCCcccccceEECCCCcccCCCCc---cccccccCCeE
Q 004704          487 GNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPS---DIGQLQAILAL  563 (735)
Q Consensus       487 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~---~l~~l~~L~~L  563 (735)
                                                                   .+.+|+.|||++|.++..|.+   .|..+++|+.|
T Consensus       363 ---------------------------------------------~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL  397 (873)
T KOG4194|consen  363 ---------------------------------------------GLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKL  397 (873)
T ss_pred             ---------------------------------------------HhhhhhhhcCcCCeEEEEEecchhhhccchhhhhe
Confidence                                                         235777888888888765543   46778889999


Q ss_pred             eCCCCcCcccCcccccCcCCCCEEeCCCCcccccCCccccCCCCCCeEEcccC
Q 004704          564 NLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYN  616 (735)
Q Consensus       564 ~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N  616 (735)
                      .|.+|++..+...+|.++.+||.|||.+|.|..+-|.+|..+ .|+.|-+..-
T Consensus       398 ~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSs  449 (873)
T KOG4194|consen  398 RLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSS  449 (873)
T ss_pred             eecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhccc
Confidence            999999986666789999999999999999988888888888 7777665433

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=2.7e-41  Score=326.93  Aligned_cols=478  Identities=25%  Similarity=0.350  Sum_probs=331.5

Q ss_pred             CCCCCCCeeEEEeeCCCCCCCCchhhhCCCCCCEEEccCCcCcccCchHHHhCCCCCcEEECcCCcCcccCcCCcCCCCC
Q 004704           89 NWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDF  168 (735)
Q Consensus        89 ~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~  168 (735)
                      .|..-..|+.+.+++|.+. .+.+.+.++..|.+|++++|+++ ++|+.+. .+..++.++.++|++... |.......+
T Consensus        40 ~wW~qv~l~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n~l~-~lp~aig-~l~~l~~l~vs~n~ls~l-p~~i~s~~~  115 (565)
T KOG0472|consen   40 NWWEQVDLQKLILSHNDLE-VLREDLKNLACLTVLNVHDNKLS-QLPAAIG-ELEALKSLNVSHNKLSEL-PEQIGSLIS  115 (565)
T ss_pred             hhhhhcchhhhhhccCchh-hccHhhhcccceeEEEeccchhh-hCCHHHH-HHHHHHHhhcccchHhhc-cHHHhhhhh
Confidence            4445556667777777766 34445667777777777777776 6776664 667777777777777654 455666677


Q ss_pred             cCEEEccCCcCCCcCChhHHHhcccCcEEECcCCcCCCCCCcccCCCCCCCEEECCCccccCccchhhhhCCCCCCEEEc
Q 004704          169 LHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDL  248 (735)
Q Consensus       169 L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L  248 (735)
                      +..++.++|.+. ++|++++. +..++.++..+|+++ ..|.+++.+.++..+++.+|++. ..|+.... +..|+++|.
T Consensus       116 l~~l~~s~n~~~-el~~~i~~-~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i~-m~~L~~ld~  190 (565)
T KOG0472|consen  116 LVKLDCSSNELK-ELPDSIGR-LLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLK-ALPENHIA-MKRLKHLDC  190 (565)
T ss_pred             hhhhhcccccee-ecCchHHH-Hhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchh-hCCHHHHH-HHHHHhccc
Confidence            777777777777 77777776 457777777777776 67777777777777777777776 55555544 777777777


Q ss_pred             cCCCCCCcCcccccCCCCCCEEEccccccCccccccccCCCCCCEEEeeCCccCCCCCchhh-hhcccCcEEEcCCCcCC
Q 004704          249 SNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMG-NFSSELEILSMSKNHLE  327 (735)
Q Consensus       249 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~-~~~~~L~~L~l~~n~l~  327 (735)
                      ..|.++ .+|+.++.+.+|+.|++.+|++. ..| .|.++..|++++++.|+++ .+|.... .+++ +..||+.+|+++
T Consensus       191 ~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~-l~vLDLRdNklk  265 (565)
T KOG0472|consen  191 NSNLLE-TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNS-LLVLDLRDNKLK  265 (565)
T ss_pred             chhhhh-cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhccccc-ceeeeccccccc
Confidence            777766 56677777777777777777776 555 5777777777777777776 6676666 3444 777788888777


Q ss_pred             CCCCccCCCCCCCCEEEcccCCCCccCCCccCCCCccEEEccCCcccccCcccccCCC--CCcEEe-------CCCCc--
Q 004704          328 GNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSC--KLVTLN-------LRDNT--  396 (735)
Q Consensus       328 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~--~L~~L~-------l~~n~--  396 (735)
                       ..|+.++-+++|.+||+++|.+++.++...++ +|+.|.+.+|.+..+-.+.+.+-+  -|++|.       ++.-.  
T Consensus       266 -e~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~  343 (565)
T KOG0472|consen  266 -EVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGG  343 (565)
T ss_pred             -cCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCccc
Confidence             67777777777778888888777776666666 777777777776533111111100  011111       00000  


Q ss_pred             -c-cccCC----hhhhCCCCccEEEccCCcCCCCCchhhhcCCC---CCEEECcCCcCCCCCCchhhcccccccc---cC
Q 004704          397 -F-SGRIP----HQINEHSNLRFLLLGGNHLQGPIPDQLCQLQK---LAMMDLSRNKFSGSIPPCFANVLSWRVG---SD  464 (735)
Q Consensus       397 -l-~~~~~----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~---L~~L~Ls~N~l~~~~p~~~~~l~~l~~~---~~  464 (735)
                       - ....+    .......+.+.|++++-+++ .+|+....-..   ....+++.|++. .+|..+..++.+...   +.
T Consensus       344 ~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsn  421 (565)
T KOG0472|consen  344 TETAMTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSN  421 (565)
T ss_pred             ccccCCCCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhc
Confidence             0 00111    11223456778888888887 45554433333   667788888886 666655544322210   11


Q ss_pred             CccCCCCCCCcccchhhhcccCCCCCCCccccchhhhhhhhhhhhccccceeEEEEeccccccccCCcccccceEECCCC
Q 004704          465 DVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCN  544 (735)
Q Consensus       465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N  544 (735)
                      +....                        +                                ....+.++.++.|+|++|
T Consensus       422 n~isf------------------------v--------------------------------~~~l~~l~kLt~L~L~NN  445 (565)
T KOG0472|consen  422 NKISF------------------------V--------------------------------PLELSQLQKLTFLDLSNN  445 (565)
T ss_pred             Ccccc------------------------c--------------------------------hHHHHhhhcceeeecccc
Confidence            10000                        0                                000134578899999999


Q ss_pred             cccCCCCccccccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccCCccccCCCCCCeEEcccCcCcccCCC
Q 004704          545 QLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPD  624 (735)
Q Consensus       545 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~  624 (735)
                      -+. .+|.+++.+..|+.||+|+|++. .+|..+..+..||.+--++|++....|+.+.+|..|.+||+.+|.+...+|.
T Consensus       446 ~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~  523 (565)
T KOG0472|consen  446 LLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPI  523 (565)
T ss_pred             hhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhCChh
Confidence            888 89999999999999999999999 8999999999999999999999977777799999999999999999999998


Q ss_pred             CCCCCccCCcccCCCCCC
Q 004704          625 KGQFATFDESSYRGNPSL  642 (735)
Q Consensus       625 ~~~~~~~~~~~~~gN~~l  642 (735)
                      .+..+.+....+.|||.-
T Consensus       524 LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  524 LGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             hccccceeEEEecCCccC
Confidence            899999999999999865

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=100.00  E-value=3.4e-37  Score=328.15  Aligned_cols=422  Identities=25%  Similarity=0.286  Sum_probs=242.0

Q ss_pred             CcCCCCCCCCccccccCCCCCCCEEeCCCCcCCCCcchhhhCCCCCCEEeCCCCcccccCChhhhhcCCCCCeeeccccc
Q 004704            1 MNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRN   80 (735)
Q Consensus         1 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~~~   80 (735)
                      +|+|...+. .+|..+..-..++.|+++.|.+-...-+...+.-+|+.||+|+|++. .+| ..+..+.+|+.|.++.|.
T Consensus         3 vd~s~~~l~-~ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp-~~it~l~~L~~ln~s~n~   79 (1081)
T KOG0618|consen    3 VDASDEQLE-LIPEQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFP-IQITLLSHLRQLNLSRNY   79 (1081)
T ss_pred             cccccccCc-ccchhhccHHHHHhhhccccccccCchHHhhheeeeEEeeccccccc-cCC-chhhhHHHHhhcccchhh
Confidence            466777766 56777776667899999999776433445566777999999999885 677 457788888888888765


Q ss_pred             ccccccCCCCCCCCCeeEEEeeCCCCCCCCchhhhCCCCCCEEEccCCcCcccCchHHHhCCCCCcEEECcCCcCcccCc
Q 004704           81 NTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQ  160 (735)
Q Consensus        81 ~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~  160 (735)
                      +.. .+ .+...+.+|+++.|.+|.+. ..|..+..+++|++||+|.|.+. .+|..+. .+..++.+..++|.....  
T Consensus        80 i~~-vp-~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~-~lt~~~~~~~s~N~~~~~--  152 (1081)
T KOG0618|consen   80 IRS-VP-SSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIE-VLTAEEELAASNNEKIQR--  152 (1081)
T ss_pred             Hhh-Cc-hhhhhhhcchhheeccchhh-cCchhHHhhhcccccccchhccC-CCchhHH-hhhHHHHHhhhcchhhhh--
Confidence            532 22 33456678888888877776 67778888888888888888886 7777664 677777777777722111  


Q ss_pred             CCcCCCCCcCEEEccCCcCCCcCChhHHHhcccCcEEECcCCcCCCCCCcccCCCCCCCEEECCCccccCccchhhhhCC
Q 004704          161 LPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGC  240 (735)
Q Consensus       161 ~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l  240 (735)
                        ++... ++.+++..|.+.+.++.++.. ++.  .|+|.+|.+.   -..+..+.+|+.|....|++. .+.    -.-
T Consensus       153 --lg~~~-ik~~~l~~n~l~~~~~~~i~~-l~~--~ldLr~N~~~---~~dls~~~~l~~l~c~rn~ls-~l~----~~g  218 (1081)
T KOG0618|consen  153 --LGQTS-IKKLDLRLNVLGGSFLIDIYN-LTH--QLDLRYNEME---VLDLSNLANLEVLHCERNQLS-ELE----ISG  218 (1081)
T ss_pred             --hcccc-chhhhhhhhhcccchhcchhh-hhe--eeecccchhh---hhhhhhccchhhhhhhhcccc-eEE----ecC
Confidence              11111 566666666666666666544 222  4666666654   123455566666666666554 111    123


Q ss_pred             CCCCEEEccCCCCCCcCcccccCCCCCCEEEccccccCccccccccCCCCCCEEEeeCCccCCCCCchhhhhcccCcEEE
Q 004704          241 FSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILS  320 (735)
Q Consensus       241 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~  320 (735)
                      ++|+.|+.++|.++...+  -....+|+++++++|+++ .+|+++..+.+|+.++..+|.++ .+|..+....+ |+.|.
T Consensus       219 ~~l~~L~a~~n~l~~~~~--~p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~-L~~l~  293 (1081)
T KOG0618|consen  219 PSLTALYADHNPLTTLDV--HPVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITS-LVSLS  293 (1081)
T ss_pred             cchheeeeccCcceeecc--ccccccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhh-HHHHH
Confidence            456666666665552211  112345566666666655 44455556666666666666664 55555555544 55666


Q ss_pred             cCCCcCCCCCCccCCCCCCCCEEEcccCCCCccCCCcc-CC-CCccEEEccCCcccccCcccccCCCCCcEEeCCCCccc
Q 004704          321 MSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSL-NL-SSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFS  398 (735)
Q Consensus       321 l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~-~l-~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~  398 (735)
                      +..|.+. .+|....+++.|++|+|..|++...++..+ .. ..|..|..+.|++.......=...+.|+.|.+.+|.++
T Consensus       294 ~~~nel~-yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Lt  372 (1081)
T KOG0618|consen  294 AAYNELE-YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLT  372 (1081)
T ss_pred             hhhhhhh-hCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCccc
Confidence            6665555 444555555556666666555554433322 11 12444444444444222111112234555555555555


Q ss_pred             ccCChhhhCCCCccEEEccCCcCCCCCchhhhcCCCCCEEECcCCcCCCCCCchh
Q 004704          399 GRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCF  453 (735)
Q Consensus       399 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~  453 (735)
                      +..-..+.+..+|++|+|++|++.......+.++..|+.|+||+|+++ .+|.++
T Consensus       373 d~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tv  426 (1081)
T KOG0618|consen  373 DSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTV  426 (1081)
T ss_pred             ccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHH
Confidence            444444444555555555555554333333444555555555555554 344433

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=100.00  E-value=1.4e-36  Score=323.50  Aligned_cols=482  Identities=28%  Similarity=0.365  Sum_probs=374.2

Q ss_pred             EEeCCCCcCCCCcchhhhCCCCCCEEeCCCCcccccCChhhhhcCCCCCeeecccccccccccCCCCCCCCCeeEEEeeC
Q 004704           24 ILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTK  103 (735)
Q Consensus        24 ~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~  103 (735)
                      ++|+|..++. .+|..+-.-..++.|+++.|-+- ..|.....+.-+|+.|+++.|..... |. .+..+.+|+.|+++.
T Consensus         2 ~vd~s~~~l~-~ip~~i~~~~~~~~ln~~~N~~l-~~pl~~~~~~v~L~~l~lsnn~~~~f-p~-~it~l~~L~~ln~s~   77 (1081)
T KOG0618|consen    2 HVDASDEQLE-LIPEQILNNEALQILNLRRNSLL-SRPLEFVEKRVKLKSLDLSNNQISSF-PI-QITLLSHLRQLNLSR   77 (1081)
T ss_pred             CcccccccCc-ccchhhccHHHHHhhhccccccc-cCchHHhhheeeeEEeeccccccccC-Cc-hhhhHHHHhhcccch
Confidence            4688888888 77877766677999999999775 34455666666788888886654322 22 234566888888888


Q ss_pred             CCCCCCCchhhhCCCCCCEEEccCCcCcccCchHHHhCCCCCcEEECcCCcCcccCcCCcCCCCCcCEEEccCCcCCCcC
Q 004704          104 CNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKL  183 (735)
Q Consensus       104 n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~  183 (735)
                      |.+. ..|.+..++.+|+++.|.+|.+. ..|..+. .+.+|+.|+++.|++... |..+..+..++.+..++|.-...+
T Consensus        78 n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~-~lknl~~LdlS~N~f~~~-Pl~i~~lt~~~~~~~s~N~~~~~l  153 (1081)
T KOG0618|consen   78 NYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASIS-ELKNLQYLDLSFNHFGPI-PLVIEVLTAEEELAASNNEKIQRL  153 (1081)
T ss_pred             hhHh-hCchhhhhhhcchhheeccchhh-cCchhHH-hhhcccccccchhccCCC-chhHHhhhHHHHHhhhcchhhhhh
Confidence            8777 45677778888888888888877 7777764 778888888888887654 566677777777888877221122


Q ss_pred             ChhHHHhcccCcEEECcCCcCCCCCCcccCCCCCCCEEECCCccccCccchhhhhCCCCCCEEEccCCCCCCcCcccccC
Q 004704          184 PHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMN  263 (735)
Q Consensus       184 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  263 (735)
                      +    .  ..++.+++..|.+.+.++..+..+++  .|+|+.|.+. ...   ...+.+|+.+....|++....    ..
T Consensus       154 g----~--~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~~d---ls~~~~l~~l~c~rn~ls~l~----~~  217 (1081)
T KOG0618|consen  154 G----Q--TSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-VLD---LSNLANLEVLHCERNQLSELE----IS  217 (1081)
T ss_pred             c----c--ccchhhhhhhhhcccchhcchhhhhe--eeecccchhh-hhh---hhhccchhhhhhhhcccceEE----ec
Confidence            2    1  13777888888888888888887777  7999999876 222   356888999999999887432    23


Q ss_pred             CCCCCEEEccccccCccccccccCCCCCCEEEeeCCccCCCCCchhhhhcccCcEEEcCCCcCCCCCCccCCCCCCCCEE
Q 004704          264 LTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRIL  343 (735)
Q Consensus       264 l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L  343 (735)
                      -++++.|+.++|.++...+.  ....+|++++++.|+++ .+|+|++.+.. |+.++..+|+++ .+|..+...++|+.|
T Consensus       218 g~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~-~lp~wi~~~~n-le~l~~n~N~l~-~lp~ri~~~~~L~~l  292 (1081)
T KOG0618|consen  218 GPSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLS-NLPEWIGACAN-LEALNANHNRLV-ALPLRISRITSLVSL  292 (1081)
T ss_pred             CcchheeeeccCcceeeccc--cccccceeeecchhhhh-cchHHHHhccc-ceEecccchhHH-hhHHHHhhhhhHHHH
Confidence            57899999999998833332  33468999999999998 78899999887 999999999996 788888899999999


Q ss_pred             EcccCCCCccCCCccCCCCccEEEccCCcccccCcccccCCC-CCcEEeCCCCcccccCCh-hhhCCCCccEEEccCCcC
Q 004704          344 DISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSC-KLVTLNLRDNTFSGRIPH-QINEHSNLRFLLLGGNHL  421 (735)
Q Consensus       344 ~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l  421 (735)
                      .+..|.+...++...+..+|++|+|..|.+....+..+.... +|..|+.+.|++. ..|. .=...+.|+.|++.+|.+
T Consensus       293 ~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~-~lp~~~e~~~~~Lq~LylanN~L  371 (1081)
T KOG0618|consen  293 SAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLS-TLPSYEENNHAALQELYLANNHL  371 (1081)
T ss_pred             HhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhcccc-ccccccchhhHHHHHHHHhcCcc
Confidence            999999987766666899999999999999855443333333 3788888888887 3442 222367899999999999


Q ss_pred             CCCCchhhhcCCCCCEEECcCCcCCCCCCc-hhhcccccccccCCccCCCCCCCcccchhhhcccCCCCCCCccccchhh
Q 004704          422 QGPIPDQLCQLQKLAMMDLSRNKFSGSIPP-CFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWR  500 (735)
Q Consensus       422 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  500 (735)
                      +...-+.+.+.+.|+.|+|++|++. .+|. ++.+                                             
T Consensus       372 td~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~k---------------------------------------------  405 (1081)
T KOG0618|consen  372 TDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRK---------------------------------------------  405 (1081)
T ss_pred             cccchhhhccccceeeeeecccccc-cCCHHHHhc---------------------------------------------
Confidence            9888888999999999999999997 4443 3332                                             


Q ss_pred             hhhhhhhhhccccceeEEEEeccccccccCCcccccceEECCCCcccCCCCccccccccCCeEeCCCCcCcccCcccccC
Q 004704          501 WLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSN  580 (735)
Q Consensus       501 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~  580 (735)
                                                      ++.|++|+||+|+++ .+|..+..+..|++|...+|++. ..| .+.+
T Consensus       406 --------------------------------le~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~  450 (1081)
T KOG0618|consen  406 --------------------------------LEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQ  450 (1081)
T ss_pred             --------------------------------hHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhh
Confidence                                            356888999999999 89999999999999999999999 677 7999


Q ss_pred             cCCCCEEeCCCCccccc-CCccccCCCCCCeEEcccCc
Q 004704          581 LKMIESLDISYNKLTGQ-IPPQLTALNFLSIFNVSYNN  617 (735)
Q Consensus       581 l~~L~~LdLs~N~l~~~-~p~~l~~l~~L~~L~ls~N~  617 (735)
                      +++|+.+|+|.|+|+.. +|..... +.|++||+++|.
T Consensus       451 l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  451 LPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNT  487 (1081)
T ss_pred             cCcceEEecccchhhhhhhhhhCCC-cccceeeccCCc
Confidence            99999999999999854 3443333 899999999997

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=3.3e-34  Score=291.70  Aligned_cols=379  Identities=24%  Similarity=0.355  Sum_probs=240.2

Q ss_pred             EECcCCcCc-ccCcCCcCCCCCcCEEEccCCcCCCcCChhHHHhcccCcEEECcCCcCCCCCCcccCCCCCCCEEECCCc
Q 004704          148 LLLKNNSFS-GILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRN  226 (735)
Q Consensus       148 L~L~~n~l~-~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n  226 (735)
                      .|+++|.++ +..|.....+++++.|.|...++. .+|+.++. +++|++|.+++|.+. .+-..+..++.|+.+++..|
T Consensus        12 vDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~-lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv~~R~N   88 (1255)
T KOG0444|consen   12 VDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSR-LQKLEHLSMAHNQLI-SVHGELSDLPRLRSVIVRDN   88 (1255)
T ss_pred             ccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHH-HhhhhhhhhhhhhhH-hhhhhhccchhhHHHhhhcc
Confidence            334444443 223334444555555555555555 56666655 566666666666655 34445556666666666666


Q ss_pred             ccc-CccchhhhhCCCCCCEEEccCCCCCCcCcccccCCCCCCEEEccccccCccccccccCCCCCCEEEeeCCccCCCC
Q 004704          227 YFS-GGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHI  305 (735)
Q Consensus       227 ~l~-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~  305 (735)
                      ++. ..+|..+| .+..|+.|||++|++. ..|..+..-+++-.|+|++|+|..+....+.+++.|-.|||++|++. .+
T Consensus        89 ~LKnsGiP~diF-~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~L  165 (1255)
T KOG0444|consen   89 NLKNSGIPTDIF-RLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-ML  165 (1255)
T ss_pred             ccccCCCCchhc-ccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hc
Confidence            553 23555555 3666666666666666 35555666666666666666666332233455666666677777666 66


Q ss_pred             CchhhhhcccCcEEEcCCCcCCCCCCccCCCCCCCCEEEcccCCCC-ccCCCcc-CCCCccEEEccCCcccccCcccccC
Q 004704          306 PHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLS-GPIASSL-NLSSVEHLSLQKNALNGLIPGELFR  383 (735)
Q Consensus       306 p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~-~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~  383 (735)
                      |+.+..+.. |++|.+++|.+.-.--..+..+++|++|.+++.+-+ ..+|... .+.+|..++++.|.+. ..|+.+..
T Consensus       166 PPQ~RRL~~-LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~  243 (1255)
T KOG0444|consen  166 PPQIRRLSM-LQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYK  243 (1255)
T ss_pred             CHHHHHHhh-hhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhh
Confidence            666666655 677777776654333333455667777777766433 2333333 6777777777777776 56778888


Q ss_pred             CCCCcEEeCCCCcccccCChhhhCCCCccEEEccCCcCCCCCchhhhcCCCCCEEECcCCcCC-CCCCchhhcccccccc
Q 004704          384 SCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFS-GSIPPCFANVLSWRVG  462 (735)
Q Consensus       384 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~l~~~  462 (735)
                      +.+|+.|+|++|+|+ .+.-..+...+|++|+++.|+++ .+|++++++++|+.|.+.+|+++ .-+|..++++      
T Consensus       244 l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL------  315 (1255)
T KOG0444|consen  244 LRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKL------  315 (1255)
T ss_pred             hhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhh------
Confidence            888888888888887 55555666678888888888888 78888888888888888888765 1244444433      


Q ss_pred             cCCccCCCCCCCcccchhhhcccCCCCCCCccccchhhhhhhhhhhhccccceeEEEEeccccccccCCcccccceEECC
Q 004704          463 SDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLS  542 (735)
Q Consensus       463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs  542 (735)
                                                                                             ..|+.+..+
T Consensus       316 -----------------------------------------------------------------------~~Levf~aa  324 (1255)
T KOG0444|consen  316 -----------------------------------------------------------------------IQLEVFHAA  324 (1255)
T ss_pred             -----------------------------------------------------------------------hhhHHHHhh
Confidence                                                                                   345556667


Q ss_pred             CCcccCCCCccccccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccCCccccCCCCCCeEEccc
Q 004704          543 CNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSY  615 (735)
Q Consensus       543 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~  615 (735)
                      +|.+. ..|+.+..+..|+.|.|++|++. ..|+++.-++.|+.|||..|.---..|.-=..-++|+.-|+.+
T Consensus       325 nN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPPKP~da~~~lefYNIDF  395 (1255)
T KOG0444|consen  325 NNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPPKPNDARKKLEFYNIDF  395 (1255)
T ss_pred             ccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCccCCCCcchhhhcceeeecce
Confidence            77776 77888888888888888888877 6788888888888888888765533333222224555555443

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=4.4e-34  Score=290.80  Aligned_cols=384  Identities=25%  Similarity=0.328  Sum_probs=295.1

Q ss_pred             CCeeEEEeeCCCCC-CCCchhhhCCCCCCEEEccCCcCcccCchHHHhCCCCCcEEECcCCcCcccCcCCcCCCCCcCEE
Q 004704           94 SQLIVLGLTKCNLN-GSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHL  172 (735)
Q Consensus        94 ~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L  172 (735)
                      +-.+-+++++|.++ +..|..+..+++++.|.|...++. .+|+.+. .+.+|++|.+++|++..+ ...+..++.|+.+
T Consensus         7 pFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~-~lqkLEHLs~~HN~L~~v-hGELs~Lp~LRsv   83 (1255)
T KOG0444|consen    7 PFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELS-RLQKLEHLSMAHNQLISV-HGELSDLPRLRSV   83 (1255)
T ss_pred             ceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHH-HHhhhhhhhhhhhhhHhh-hhhhccchhhHHH
Confidence            44566788888888 678999999999999999999997 9999885 899999999999998865 3567788999999


Q ss_pred             EccCCcCCC-cCChhHHHhcccCcEEECcCCcCCCCCCcccCCCCCCCEEECCCccccCccchhhhhCCCCCCEEEccCC
Q 004704          173 DISCNNFRG-KLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNN  251 (735)
Q Consensus       173 ~Ls~n~l~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n  251 (735)
                      .+..|++.. -+|..+|. +..|+.|||++|.+. ..|..+..-+++-+|+||+|+|. .||..+|-++..|-.|||++|
T Consensus        84 ~~R~N~LKnsGiP~diF~-l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~N  160 (1255)
T KOG0444|consen   84 IVRDNNLKNSGIPTDIFR-LKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNN  160 (1255)
T ss_pred             hhhccccccCCCCchhcc-cccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccc
Confidence            999998753 58888887 789999999999998 78888888899999999999997 899999888999999999999


Q ss_pred             CCCCcCcccccCCCCCCEEEccccccCccccccccCCCCCCEEEeeCCccC-CCCCchhhhhcccCcEEEcCCCcCCCCC
Q 004704          252 NFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLS-GHIPHWMGNFSSELEILSMSKNHLEGNV  330 (735)
Q Consensus       252 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~-~~~p~~~~~~~~~L~~L~l~~n~l~~~~  330 (735)
                      ++. .+|+.+..+..|++|+|++|.+...--..+..+++|+.|.+++.+-+ ..+|.++..+.. |..+|++.|.+. ..
T Consensus       161 rLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~N-L~dvDlS~N~Lp-~v  237 (1255)
T KOG0444|consen  161 RLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHN-LRDVDLSENNLP-IV  237 (1255)
T ss_pred             hhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhh-hhhccccccCCC-cc
Confidence            998 56777888999999999999776333334556677788888876543 357777777765 788888888777 67


Q ss_pred             CccCCCCCCCCEEEcccCCCCccCCCccCCCCccEEEccCCcccccCcccccCCCCCcEEeCCCCcccccCChhhhCCCC
Q 004704          331 PVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSN  410 (735)
Q Consensus       331 ~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~  410 (735)
                      |+++..+++|+.|+|++|+++..-.                        ......+|++|+++.|+++ .+|+++..++.
T Consensus       238 Pecly~l~~LrrLNLS~N~iteL~~------------------------~~~~W~~lEtLNlSrNQLt-~LP~avcKL~k  292 (1255)
T KOG0444|consen  238 PECLYKLRNLRRLNLSGNKITELNM------------------------TEGEWENLETLNLSRNQLT-VLPDAVCKLTK  292 (1255)
T ss_pred             hHHHhhhhhhheeccCcCceeeeec------------------------cHHHHhhhhhhccccchhc-cchHHHhhhHH
Confidence            7777777777777777777664221                        2233446777777777776 67777777777


Q ss_pred             ccEEEccCCcCCC-CCchhhhcCCCCCEEECcCCcCCCCCCchhhcccccccccCCccCCCCCCCcccchhhhcccCCCC
Q 004704          411 LRFLLLGGNHLQG-PIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNN  489 (735)
Q Consensus       411 L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  489 (735)
                      |+.|.+.+|+++- -+|..++++.+|+.+..++|++. ..|+.++.+                                 
T Consensus       293 L~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC---------------------------------  338 (1255)
T KOG0444|consen  293 LTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRC---------------------------------  338 (1255)
T ss_pred             HHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhh---------------------------------
Confidence            7777777776652 26777777777777777777774 666655543                                 


Q ss_pred             CCCccccchhhhhhhhhhhhccccceeEEEEeccccccccCCcccccceEECCCCcccCCCCccccccccCCeEeCCCCc
Q 004704          490 RSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNS  569 (735)
Q Consensus       490 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~  569 (735)
                                                                  ..|+.|.|++|++- .+|+.|.-|+.|+.||+..|.
T Consensus       339 --------------------------------------------~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNp  373 (1255)
T KOG0444|consen  339 --------------------------------------------VKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENP  373 (1255)
T ss_pred             --------------------------------------------HHHHHhccccccee-echhhhhhcCCcceeeccCCc
Confidence                                                        34566778888877 789999999999999999998


Q ss_pred             CcccCcccccCcCCCCEEeCC
Q 004704          570 LSGSIPESFSNLKMIESLDIS  590 (735)
Q Consensus       570 l~~~~p~~~~~l~~L~~LdLs  590 (735)
                      ---.+|.-=..-+.|+.-++.
T Consensus       374 nLVMPPKP~da~~~lefYNID  394 (1255)
T KOG0444|consen  374 NLVMPPKPNDARKKLEFYNID  394 (1255)
T ss_pred             CccCCCCcchhhhcceeeecc
Confidence            663444322222556654443

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.93  E-value=1.3e-28  Score=238.93  Aligned_cols=413  Identities=19%  Similarity=0.204  Sum_probs=245.5

Q ss_pred             CcCEEEccCCcCCCcCChhHHHhcccCcEEECcCCcCCCCCCcccCCCCCCCEEECCC-ccccCccchhhhhCCCCCCEE
Q 004704          168 FLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSR-NYFSGGLSQSVVTGCFSLELL  246 (735)
Q Consensus       168 ~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~-n~l~~~~~~~~~~~l~~L~~L  246 (735)
                      .-..++|..|+|+ .+|+..|+.+++|+.|||++|.|+...|.+|..++++..|.+.+ |+|+ .+|...|.++.+|+.|
T Consensus        68 ~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slqrL  145 (498)
T KOG4237|consen   68 ETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQRL  145 (498)
T ss_pred             cceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHHHH
Confidence            3456677777776 67777777777777777777777767777777777777776666 6776 7777777888888888


Q ss_pred             EccCCCCCCcCcccccCCCCCCEEEccccccCccccccccCCCCCCEEEeeCCccCC------------CCCchhhhhcc
Q 004704          247 DLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSG------------HIPHWMGNFSS  314 (735)
Q Consensus       247 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~------------~~p~~~~~~~~  314 (735)
                      .+.-|++.-...++|..++++..|.+.+|.+...-..+|..+.+++.+.+..|.+..            ..|..++...-
T Consensus       146 llNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc  225 (498)
T KOG4237|consen  146 LLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARC  225 (498)
T ss_pred             hcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhccccee
Confidence            888788777777778888888888888887773333467777778888777776321            11111111111


Q ss_pred             cCcEEEcCCCcCCCCCCccCCCC-CCCCEEEcccCCCCccCC-Ccc-CCCCccEEEccCCcccccCcccccCCCCCcEEe
Q 004704          315 ELEILSMSKNHLEGNVPVQLNNL-ERLRILDISENRLSGPIA-SSL-NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLN  391 (735)
Q Consensus       315 ~L~~L~l~~n~l~~~~~~~l~~l-~~L~~L~L~~n~l~~~~~-~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~  391 (735)
                       ..-..+.+.++..+.+..|... +.+..--.+.+......| ..+ .+++|+.|++++|+++++-+.+|.+...++.|.
T Consensus       226 -~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~  304 (498)
T KOG4237|consen  226 -VSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELY  304 (498)
T ss_pred             -cchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhh
Confidence             2222233333332323322211 111111112222222222 233 688888888888888888888888888888888


Q ss_pred             CCCCcccccCChhhhCCCCccEEEccCCcCCCCCchhhhcCCCCCEEECcCCcCCCCCC-chhhcccccccccCCccCCC
Q 004704          392 LRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIP-PCFANVLSWRVGSDDVLNGS  470 (735)
Q Consensus       392 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~l~~~~~~~~~~~  470 (735)
                      |..|++...-...|.++..|+.|+|.+|+|+...|.+|..+..|.+|.+-.|.+...-- .+++.  |++..+  .....
T Consensus       305 L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~--Wlr~~~--~~~~~  380 (498)
T KOG4237|consen  305 LTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGE--WLRKKS--VVGNP  380 (498)
T ss_pred             cCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHH--HHhhCC--CCCCC
Confidence            88888876666677888888888888888887778888888888888888887652110 11111  222211  23333


Q ss_pred             CCCCcccchhhhcccCCCCCCCccccchhhhhhhhhhhhccccceeEEEEeccccccccCCccccc-ceEECCCCcccCC
Q 004704          471 KLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRV-TGLDLSCNQLTGE  549 (735)
Q Consensus       471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L-~~LdLs~N~l~~~  549 (735)
                      .++.+....++.+.......        ++.-..          ........    ..-...++-+ +....|++.++ .
T Consensus       381 ~Cq~p~~~~~~~~~dv~~~~--------~~c~~~----------ee~~~~~s----~~cP~~c~c~~tVvRcSnk~lk-~  437 (498)
T KOG4237|consen  381 RCQSPGFVRQIPISDVAFGD--------FRCGGP----------EELGCLTS----SPCPPPCTCLDTVVRCSNKLLK-L  437 (498)
T ss_pred             CCCCCchhccccchhccccc--------cccCCc----------cccCCCCC----CCCCCCcchhhhhHhhcccchh-h
Confidence            33433333333332221110        000000          00000000    0000111112 12345555555 5


Q ss_pred             CCccccccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccCCccccCCCCCCeEEcccC
Q 004704          550 IPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYN  616 (735)
Q Consensus       550 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N  616 (735)
                      +|..+.  ..-.+|++.+|.++ .+|..  .+.+| .+|+|+|+++..--..|.+++.|.+|-+|||
T Consensus       438 lp~~iP--~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn  498 (498)
T KOG4237|consen  438 LPRGIP--VDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN  498 (498)
T ss_pred             cCCCCC--chhHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence            565554  34567788888888 56665  66777 8888888888766777888888888888876

>PLN03210 Resistant to P

Probab=99.91  E-value=4.3e-23  Score=247.19  Aligned_cols=318  Identities=21%  Similarity=0.223  Sum_probs=161.3

Q ss_pred             CChhHHHhcccCcEEECcCCcCCCCCCcccCCCCCCCEEECCCccccCccchhhhhCCCCCCEEEccCCCCCCcCccccc
Q 004704          183 LPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYM  262 (735)
Q Consensus       183 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  262 (735)
                      +|..+....++|+.|.+.++.+. .+|..+ ...+|+.|++++|++. .++..+ ..+++|+.|+++++.....+| .+.
T Consensus       580 lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~-~~l~~Lk~L~Ls~~~~l~~ip-~ls  654 (1153)
T PLN03210        580 LPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDGV-HSLTGLRNIDLRGSKNLKEIP-DLS  654 (1153)
T ss_pred             cCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-cccccc-ccCCCCCEEECCCCCCcCcCC-ccc
Confidence            33333332234455555444443 344433 2344555555554443 333322 234445555554443222222 244


Q ss_pred             CCCCCCEEEccccccCccccccccCCCCCCEEEeeCCccCCCCCchhhhhcccCcEEEcCCCcCCCCCCccCCCCCCCCE
Q 004704          263 NLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRI  342 (735)
Q Consensus       263 ~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~  342 (735)
                      .+++|++|++++|.....+|..+..+++|+.|++++|.....+|..+ .+.+ |+.|++++|......|..   ..+|++
T Consensus       655 ~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~s-L~~L~Lsgc~~L~~~p~~---~~nL~~  729 (1153)
T PLN03210        655 MATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKS-LYRLNLSGCSRLKSFPDI---STNISW  729 (1153)
T ss_pred             cCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCC-CCEEeCCCCCCccccccc---cCCcCe
Confidence            44455555555444333444444445555555555443333444332 2222 555555554333333321   234455


Q ss_pred             EEcccCCCCccCCCccCCCCccEEEccCCccc-------ccCcccccCCCCCcEEeCCCCcccccCChhhhCCCCccEEE
Q 004704          343 LDISENRLSGPIASSLNLSSVEHLSLQKNALN-------GLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLL  415 (735)
Q Consensus       343 L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~-------~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  415 (735)
                      |++++|.+.. +|....+++|+.|.+.++...       ...+.....+++|+.|++++|...+.+|.+++++++|+.|+
T Consensus       730 L~L~~n~i~~-lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~  808 (1153)
T PLN03210        730 LDLDETAIEE-FPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLE  808 (1153)
T ss_pred             eecCCCcccc-ccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEE
Confidence            5555554432 222224444555544442211       11111222345677777777766666777777777777777


Q ss_pred             ccCCcCCCCCchhhhcCCCCCEEECcCCcCCCCCCchhhcccccccccCCccCCCCCCCcccchhhhcccCCCCCCCccc
Q 004704          416 LGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTM  495 (735)
Q Consensus       416 L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  495 (735)
                      +++|...+.+|..+ .+++|+.|++++|.....+|.                                            
T Consensus       809 Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~--------------------------------------------  843 (1153)
T PLN03210        809 IENCINLETLPTGI-NLESLESLDLSGCSRLRTFPD--------------------------------------------  843 (1153)
T ss_pred             CCCCCCcCeeCCCC-CccccCEEECCCCCccccccc--------------------------------------------
Confidence            77765444556544 566777777776643322221                                            


Q ss_pred             cchhhhhhhhhhhhccccceeEEEEeccccccccCCcccccceEECCCCcccCCCCccccccccCCeEeCCCCcCcccCc
Q 004704          496 FGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIP  575 (735)
Q Consensus       496 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p  575 (735)
                                                          ..++++.|+|++|.++ .+|..+..+++|+.|+|++|.--..+|
T Consensus       844 ------------------------------------~~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~  886 (1153)
T PLN03210        844 ------------------------------------ISTNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVS  886 (1153)
T ss_pred             ------------------------------------cccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccC
Confidence                                                1135666777777777 677777777778888877743333566


Q ss_pred             ccccCcCCCCEEeCCCCc
Q 004704          576 ESFSNLKMIESLDISYNK  593 (735)
Q Consensus       576 ~~~~~l~~L~~LdLs~N~  593 (735)
                      ..+..+++|+.+++++|.
T Consensus       887 ~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        887 LNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             cccccccCCCeeecCCCc
Confidence            667777777777777774

syringae 6; Provisional

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.91  E-value=1.3e-26  Score=225.12  Aligned_cols=279  Identities=19%  Similarity=0.201  Sum_probs=211.1

Q ss_pred             CCCCEEeCCCCcCCCCcchhhhCCCCCCEEeCCCCcccccCChhhhhcCCCCCeeecccccccccccCCCCCCCCCeeEE
Q 004704           20 TRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVL   99 (735)
Q Consensus        20 ~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L   99 (735)
                      +.-+.++|..|+|+.+.|.+|+.+++||.||||+|+|+ .|...+|.+++.|..|.+-+++.+..++..+|..+..|+.|
T Consensus        67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is-~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrL  145 (498)
T KOG4237|consen   67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNIS-FIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRL  145 (498)
T ss_pred             CcceEEEeccCCcccCChhhccchhhhceecccccchh-hcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHH
Confidence            35688999999999887889999999999999999998 45558899999999999998888889999999999999999


Q ss_pred             EeeCCCCCCCCchhhhCCCCCCEEEccCCcCcccCchHHHhCCCCCcEEECcCCcCcc------------cCcCCcCCCC
Q 004704          100 GLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSG------------ILQLPKAKHD  167 (735)
Q Consensus       100 ~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~------------~~~~~~~~~~  167 (735)
                      .+.-|++.-...++|..++++..|.+.+|.+. .++...+..+..++++.+..|.+..            ..+..++...
T Consensus       146 llNan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgar  224 (498)
T KOG4237|consen  146 LLNANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGAR  224 (498)
T ss_pred             hcChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccce
Confidence            99999999888899999999999999999998 8888777889999999999887431            1122233333


Q ss_pred             CcCEEEccCCcCCCcCChhHHH-hcccCcEEECcCCcCCCCCC-cccCCCCCCCEEECCCccccCccchhhhhCCCCCCE
Q 004704          168 FLHHLDISCNNFRGKLPHNMGV-ILQKLMYMDISKNCFEGNIP-YSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLEL  245 (735)
Q Consensus       168 ~L~~L~Ls~n~l~~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~  245 (735)
                      ......+.+.++. +++..-+. ....+.+--.+.+...+.-| ..|+.+++|+.|+|++|+++ .+.+..|.+...+++
T Consensus       225 c~~p~rl~~~Ri~-q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~-~i~~~aFe~~a~l~e  302 (498)
T KOG4237|consen  225 CVSPYRLYYKRIN-QEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKIT-RIEDGAFEGAAELQE  302 (498)
T ss_pred             ecchHHHHHHHhc-ccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccc-hhhhhhhcchhhhhh
Confidence            3333344444444 33333222 11122221223333333333 34778888888888888887 566677788888888


Q ss_pred             EEccCCCCCCcCcccccCCCCCCEEEccccccCccccccccCCCCCCEEEeeCCccC
Q 004704          246 LDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLS  302 (735)
Q Consensus       246 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~  302 (735)
                      |.|..|++.......|.++..|++|+|++|+|+...|.+|..+.+|.+|.+-.|.+.
T Consensus       303 L~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~  359 (498)
T KOG4237|consen  303 LYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN  359 (498)
T ss_pred             hhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCccc
Confidence            888888888777777888888888888888888777888888888888888877664

>PLN03210 Resistant to P

Probab=99.90  E-value=9.6e-23  Score=244.18  Aligned_cols=341  Identities=20%  Similarity=0.209  Sum_probs=256.9

Q ss_pred             CCCCCCCCCeeEEEeeCCC------CCCCCchhhhCCC-CCCEEEccCCcCcccCchHHHhCCCCCcEEECcCCcCcccC
Q 004704           87 TENWLPTSQLIVLGLTKCN------LNGSYPDFLLHQY-HLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGIL  159 (735)
Q Consensus        87 ~~~~~~~~~L~~L~L~~n~------l~~~~~~~l~~l~-~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~  159 (735)
                      ..+|..+.+|+.|.+..+.      +...+|..+..++ +|+.|++.++.+. .+|..+  ...+|++|++.+|.+... 
T Consensus       551 ~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f--~~~~L~~L~L~~s~l~~L-  626 (1153)
T PLN03210        551 ENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF--RPENLVKLQMQGSKLEKL-  626 (1153)
T ss_pred             HHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC--CccCCcEEECcCcccccc-
Confidence            3456777788888776553      2234566666654 5888888888886 788765  568888899988887754 


Q ss_pred             cCCcCCCCCcCEEEccCCcCCCcCChhHHHhcccCcEEECcCCcCCCCCCcccCCCCCCCEEECCCccccCccchhhhhC
Q 004704          160 QLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTG  239 (735)
Q Consensus       160 ~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~  239 (735)
                      +..+..+++|+.|+++++.....+|. +. .+++|+.|++++|.....+|..+.++++|+.|++++|...+.+|...  +
T Consensus       627 ~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls-~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i--~  702 (1153)
T PLN03210        627 WDGVHSLTGLRNIDLRGSKNLKEIPD-LS-MATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI--N  702 (1153)
T ss_pred             ccccccCCCCCEEECCCCCCcCcCCc-cc-cCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC--C
Confidence            45567788889999988764446774 33 36889999998887666788888889999999998876555777654  6


Q ss_pred             CCCCCEEEccCCCCCCcCcccccCCCCCCEEEccccccCccccccccCCCCCCEEEeeCCccCC------CCCchhhhhc
Q 004704          240 CFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSG------HIPHWMGNFS  313 (735)
Q Consensus       240 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~------~~p~~~~~~~  313 (735)
                      +++|+.|++++|.....+|..   .++|++|++++|.+. .+|..+ .+++|++|++.++....      .++......+
T Consensus       703 l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~  777 (1153)
T PLN03210        703 LKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLS  777 (1153)
T ss_pred             CCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-cccccccccccccchhhccccccccchhhhhcc
Confidence            888999999888655555532   467888999998886 566554 57788888887643210      1112222233


Q ss_pred             ccCcEEEcCCCcCCCCCCccCCCCCCCCEEEcccCCCCccCCCccCCCCccEEEccCCcccccCcccccCCCCCcEEeCC
Q 004704          314 SELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLR  393 (735)
Q Consensus       314 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~  393 (735)
                      .+|+.|++++|.....+|..+.++++|+.|++++|...+.+|....+++|+.|++++|.....+|..   .++|+.|+++
T Consensus       778 ~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls  854 (1153)
T PLN03210        778 PSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDI---STNISDLNLS  854 (1153)
T ss_pred             ccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCcccccccc---ccccCEeECC
Confidence            4599999999988778899999999999999999865556666668899999999998765555543   3679999999


Q ss_pred             CCcccccCChhhhCCCCccEEEccCCcCCCCCchhhhcCCCCCEEECcCCc
Q 004704          394 DNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNK  444 (735)
Q Consensus       394 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~  444 (735)
                      +|.++ .+|.++..+++|+.|++++|+-...+|..+..+++|+.+++++|.
T Consensus       855 ~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        855 RTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             CCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence            99998 789999999999999999965544678888899999999999985

syringae 6; Provisional

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.88  E-value=7.2e-22  Score=219.07  Aligned_cols=81  Identities=31%  Similarity=0.335  Sum_probs=48.9

Q ss_pred             ccceEECCCCcccCCCCccccccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccCCccccCCCCCCeEEcc
Q 004704          535 RVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVS  614 (735)
Q Consensus       535 ~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls  614 (735)
                      +|+.|++++|+++ .+|...   ++|+.|++++|++++ +|...   .+|+.|++++|+++ .+|..+..++.|+.|+++
T Consensus       383 ~L~~LdLs~N~Lt-~LP~l~---s~L~~LdLS~N~Lss-IP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs  453 (788)
T PRK15387        383 GLKELIVSGNRLT-SLPVLP---SELKELMVSGNRLTS-LPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLE  453 (788)
T ss_pred             ccceEEecCCccc-CCCCcc---cCCCEEEccCCcCCC-CCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECC
Confidence            3455666666666 344332   456666666666663 45432   34566667777666 566666666667777777


Q ss_pred             cCcCcccCCC
Q 004704          615 YNNLSGRTPD  624 (735)
Q Consensus       615 ~N~l~~~~p~  624 (735)
                      +|+|+|.+|.
T Consensus       454 ~N~Ls~~~~~  463 (788)
T PRK15387        454 GNPLSERTLQ  463 (788)
T ss_pred             CCCCCchHHH
Confidence            7776665543

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.86  E-value=5.9e-21  Score=211.84  Aligned_cols=263  Identities=24%  Similarity=0.297  Sum_probs=131.7

Q ss_pred             CCCEEEccCCcCcccCchHHHhCCCCCcEEECcCCcCcccCcCCcCCCCCcCEEEccCCcCCCcCChhHHHhcccCcEEE
Q 004704          119 HLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMD  198 (735)
Q Consensus       119 ~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~  198 (735)
                      .-..|+++++.++ .+|..+.   ++|+.|++.+|+++.+..    .+++|++|++++|+++ .+|..    .++|+.|+
T Consensus       202 ~~~~LdLs~~~Lt-sLP~~l~---~~L~~L~L~~N~Lt~LP~----lp~~Lk~LdLs~N~Lt-sLP~l----p~sL~~L~  268 (788)
T PRK15387        202 GNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLT-SLPVL----PPGLLELS  268 (788)
T ss_pred             CCcEEEcCCCCCC-cCCcchh---cCCCEEEccCCcCCCCCC----CCCCCcEEEecCCccC-cccCc----ccccceee
Confidence            3556777777776 6666543   356677777776665421    2456666666666666 45532    24666666


Q ss_pred             CcCCcCCCCCCcccCCCCCCCEEECCCccccCccchhhhhCCCCCCEEEccCCCCCCcCcccccCCCCCCEEEccccccC
Q 004704          199 ISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFS  278 (735)
Q Consensus       199 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  278 (735)
                      +++|.++ .+|..   .+.|+.|++++|+++ .+|.    ..++|+.|++++|.+++ +|..   ..+|+.|++++|.++
T Consensus       269 Ls~N~L~-~Lp~l---p~~L~~L~Ls~N~Lt-~LP~----~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~  335 (788)
T PRK15387        269 IFSNPLT-HLPAL---PSGLCKLWIFGNQLT-SLPV----LPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLT  335 (788)
T ss_pred             ccCCchh-hhhhc---hhhcCEEECcCCccc-cccc----cccccceeECCCCcccc-CCCC---cccccccccccCccc
Confidence            6666665 34432   244556666666665 3443    13456666666666653 2221   234555566666555


Q ss_pred             ccccccccCCCCCCEEEeeCCccCCCCCchhhhhcccCcEEEcCCCcCCCCCCccCCCCCCCCEEEcccCCCCccCCCcc
Q 004704          279 GKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSL  358 (735)
Q Consensus       279 ~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~  358 (735)
                       .+|..   ..+|+.|++++|+++ .+|..    +.+|+.|++++|++++ +|...   .+|+.|++++|++++.+. . 
T Consensus       336 -~LP~l---p~~Lq~LdLS~N~Ls-~LP~l----p~~L~~L~Ls~N~L~~-LP~l~---~~L~~LdLs~N~Lt~LP~-l-  400 (788)
T PRK15387        336 -SLPTL---PSGLQELSVSDNQLA-SLPTL----PSELYKLWAYNNRLTS-LPALP---SGLKELIVSGNRLTSLPV-L-  400 (788)
T ss_pred             -ccccc---ccccceEecCCCccC-CCCCC----Ccccceehhhcccccc-Ccccc---cccceEEecCCcccCCCC-c-
Confidence             23321   135556666666655 34431    2235555555555552 33221   345555555555543221 1 


Q ss_pred             CCCCccEEEccCCcccccCcccccCCCCCcEEeCCCCcccccCChhhhCCCCccEEEccCCcCCCCCchh
Q 004704          359 NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQ  428 (735)
Q Consensus       359 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  428 (735)
                       .++|+.|++++|.+++ +|..   ..+|+.|++++|+++ .+|..+..+++|+.|+|++|++++..+..
T Consensus       401 -~s~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~  464 (788)
T PRK15387        401 -PSELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQA  464 (788)
T ss_pred             -ccCCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHH
Confidence             2344444444444442 2221   123444444444444 34444444444444444444444444433

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.81  E-value=1.3e-19  Score=202.78  Aligned_cols=222  Identities=21%  Similarity=0.335  Sum_probs=87.8

Q ss_pred             CcEEECcCCcCCCCCCcccCCCCCCCEEECCCccccCccchhhhhCCCCCCEEEccCCCCCCcCcccccCCCCCCEEEcc
Q 004704          194 LMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFE  273 (735)
Q Consensus       194 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  273 (735)
                      ...|+++++.++ .+|..+.  ++|+.|++++|+++ .+|..++   .+|++|++++|.++. +|..+  .++|+.|+++
T Consensus       180 ~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~---~nL~~L~Ls~N~Lts-LP~~l--~~~L~~L~Ls  249 (754)
T PRK15370        180 KTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ---GNIKTLYANSNQLTS-IPATL--PDTIQEMELS  249 (754)
T ss_pred             ceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc---cCCCEEECCCCcccc-CChhh--hccccEEECc
Confidence            344444444444 2333332  24444444444444 3443321   244444444444442 22222  1234444444


Q ss_pred             ccccCccccccccCCCCCCEEEeeCCccCCCCCchhhhhcccCcEEEcCCCcCCCCCCccCCCCCCCCEEEcccCCCCcc
Q 004704          274 NNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGP  353 (735)
Q Consensus       274 ~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~  353 (735)
                      +|.+. .+|..+.  .+|+.|++++|+++ .+|..+.   .+|+.|++++|++++ +|..+.  ++|+.|++++|+++..
T Consensus       250 ~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~---~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~L  319 (754)
T PRK15370        250 INRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP---EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTAL  319 (754)
T ss_pred             CCccC-cCChhHh--CCCCEEECcCCccC-ccccccC---CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCccccC
Confidence            44444 3333221  24444444444444 3333221   124444444444442 222221  2344444444444322


Q ss_pred             CCCccCCCCccEEEccCCcccccCcccccCCCCCcEEeCCCCcccccCChhhhCCCCccEEEccCCcCCCCCchhhhcCC
Q 004704          354 IASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQ  433 (735)
Q Consensus       354 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  433 (735)
                      +...  .++|+.|++++|.+++ +|..+.  ++|+.|++++|+++ .+|..+.  ++|+.|++++|.++ .+|..+.  .
T Consensus       320 P~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~--~  388 (754)
T PRK15370        320 PETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENLP--A  388 (754)
T ss_pred             Cccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHH--H
Confidence            1111  1334444444444432 222221  34444444444444 2333332  34444555444444 2333322  1


Q ss_pred             CCCEEECcCCcCC
Q 004704          434 KLAMMDLSRNKFS  446 (735)
Q Consensus       434 ~L~~L~Ls~N~l~  446 (735)
                      .|+.|++++|+++
T Consensus       389 sL~~LdLs~N~L~  401 (754)
T PRK15370        389 ALQIMQASRNNLV  401 (754)
T ss_pred             HHHHHhhccCCcc
Confidence            3444444444444

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.80  E-value=1.6e-19  Score=201.97  Aligned_cols=202  Identities=24%  Similarity=0.400  Sum_probs=124.2

Q ss_pred             CCCEEECCCccccCccchhhhhCCCCCCEEEccCCCCCCcCcccccCCCCCCEEEccccccCccccccccCCCCCCEEEe
Q 004704          217 ELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDI  296 (735)
Q Consensus       217 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l  296 (735)
                      +...|+++++.++ .+|..+   .+.|+.|++++|.++. +|..+  .++|++|++++|+++ .+|..+.  ++|+.|++
T Consensus       179 ~~~~L~L~~~~Lt-sLP~~I---p~~L~~L~Ls~N~Lts-LP~~l--~~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~L  248 (754)
T PRK15370        179 NKTELRLKILGLT-TIPACI---PEQITTLILDNNELKS-LPENL--QGNIKTLYANSNQLT-SIPATLP--DTIQEMEL  248 (754)
T ss_pred             CceEEEeCCCCcC-cCCccc---ccCCcEEEecCCCCCc-CChhh--ccCCCEEECCCCccc-cCChhhh--ccccEEEC
Confidence            4567888888777 566544   3467888888888774 44433  247888888888777 4555442  46778888


Q ss_pred             eCCccCCCCCchhhhhcccCcEEEcCCCcCCCCCCccCCCCCCCCEEEcccCCCCccCCCccCCCCccEEEccCCccccc
Q 004704          297 SNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGL  376 (735)
Q Consensus       297 ~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~  376 (735)
                      ++|.+. .+|..+.   ++|+.|++++|+++ .+|..+.  ++|+.|++++|++++.+...  .++|+.|++++|.++. 
T Consensus       249 s~N~L~-~LP~~l~---s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~LP~~l--p~sL~~L~Ls~N~Lt~-  318 (754)
T PRK15370        249 SINRIT-ELPERLP---SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRTLPAHL--PSGITHLNVQSNSLTA-  318 (754)
T ss_pred             cCCccC-cCChhHh---CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccccCcccc--hhhHHHHHhcCCcccc-
Confidence            888777 6666543   34777888877777 3555443  46777777777776533221  2356666666666663 


Q ss_pred             CcccccCCCCCcEEeCCCCcccccCChhhhCCCCccEEEccCCcCCCCCchhhhcCCCCCEEECcCCcCC
Q 004704          377 IPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFS  446 (735)
Q Consensus       377 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~  446 (735)
                      +|..+  .++|+.|++++|.++ .+|..+.  ++|+.|++++|+++ .+|..+.  ++|+.|++++|+++
T Consensus       319 LP~~l--~~sL~~L~Ls~N~Lt-~LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt  380 (754)
T PRK15370        319 LPETL--PPGLKTLEAGENALT-SLPASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT  380 (754)
T ss_pred             CCccc--cccceeccccCCccc-cCChhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC
Confidence            23322  245666666666665 3454442  46666666666665 3444432  45666666666665

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.74  E-value=9.8e-19  Score=182.58  Aligned_cols=208  Identities=23%  Similarity=0.255  Sum_probs=94.5

Q ss_pred             CcCCCCCCCC-ccccccCCCCCCCEEeCCCCcCCCC----cchhhhCCCCCCEEeCCCCcccccCChhhhhcCCCCCeee
Q 004704            1 MNLERNFIGS-PLITCLKNLTRLKILDISSNQLNGS----LPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLL   75 (735)
Q Consensus         1 L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~i~~~----~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~   75 (735)
                      |+|..+.+++ .....|..+++|++|+++++.++..    ++..+...+.|++|+++++.+.+ .+.. +          
T Consensus         3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~-~~~~-~----------   70 (319)
T cd00116           3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGR-IPRG-L----------   70 (319)
T ss_pred             cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCC-cchH-H----------
Confidence            4556666653 2344555566666666666666432    33444555566666666665532 1100 0          


Q ss_pred             cccccccccccCCCCCCCCCeeEEEeeCCCCCCCCchhhhCCCC---CCEEEccCCcCcccC----chHHHhCC-CCCcE
Q 004704           76 LSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYH---LKYLDLSHNKLVGNF----PTWLLRNN-PKLEV  147 (735)
Q Consensus        76 L~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~---L~~L~Ls~n~l~~~~----p~~~~~~l-~~L~~  147 (735)
                              ......+..+++|+.|++++|.+.+..+..+..+.+   |++|++++|++++..    ...+ ..+ ++|+.
T Consensus        71 --------~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l-~~~~~~L~~  141 (319)
T cd00116          71 --------QSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGL-KDLPPALEK  141 (319)
T ss_pred             --------HHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHH-HhCCCCceE
Confidence                    000001223445555555555555444444443333   666666666655211    1111 133 55555


Q ss_pred             EECcCCcCccc----CcCCcCCCCCcCEEEccCCcCCCcCChhHHHh---cccCcEEECcCCcCCCC----CCcccCCCC
Q 004704          148 LLLKNNSFSGI----LQLPKAKHDFLHHLDISCNNFRGKLPHNMGVI---LQKLMYMDISKNCFEGN----IPYSAGEMK  216 (735)
Q Consensus       148 L~L~~n~l~~~----~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~---l~~L~~L~L~~n~l~~~----~~~~l~~l~  216 (735)
                      |++++|.+++.    ....+..+++|++|++++|.+++.....+...   +++|++|++++|.+.+.    ++..+..++
T Consensus       142 L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~  221 (319)
T cd00116         142 LVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLK  221 (319)
T ss_pred             EEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccC
Confidence            55555555521    11223344455555555555543221122111   23555555555544321    122233444


Q ss_pred             CCCEEECCCcccc
Q 004704          217 ELSLLDLSRNYFS  229 (735)
Q Consensus       217 ~L~~L~L~~n~l~  229 (735)
                      +|++|++++|.++
T Consensus       222 ~L~~L~ls~n~l~  234 (319)
T cd00116         222 SLEVLNLGDNNLT  234 (319)
T ss_pred             CCCEEecCCCcCc
Confidence            5555555555444

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.72  E-value=1.7e-18  Score=180.77  Aligned_cols=204  Identities=25%  Similarity=0.315  Sum_probs=95.2

Q ss_pred             CCCCCEEEccCCCCCCcCcccccCCCC---CCEEEccccccCc----cccccccCC-CCCCEEEeeCCccCCCC----Cc
Q 004704          240 CFSLELLDLSNNNFEGQFFSEYMNLTR---LRHLYFENNNFSG----KIKDGLLSS-TSLQVLDISNNMLSGHI----PH  307 (735)
Q Consensus       240 l~~L~~L~L~~n~l~~~~~~~~~~l~~---L~~L~L~~n~l~~----~~~~~l~~~-~~L~~L~l~~n~l~~~~----p~  307 (735)
                      +++|+.|++++|.+.+..+..+..+.+   |++|++++|++.+    .+...+..+ ++|+.|++++|.+++..    +.
T Consensus        80 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~  159 (319)
T cd00116          80 GCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAK  159 (319)
T ss_pred             cCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHH
Confidence            445555555555554333333333322   5555555555442    112223333 55555555555555321    11


Q ss_pred             hhhhhcccCcEEEcCCCcCCCC----CCccCCCCCCCCEEEcccCCCCccCCC----cc-CCCCccEEEccCCcccccCc
Q 004704          308 WMGNFSSELEILSMSKNHLEGN----VPVQLNNLERLRILDISENRLSGPIAS----SL-NLSSVEHLSLQKNALNGLIP  378 (735)
Q Consensus       308 ~~~~~~~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~~~----~~-~l~~L~~L~l~~n~l~~~~~  378 (735)
                      .+..+.. |++|++++|.+++.    ++..+..+++|++|++++|.+.+....    .+ .+++|++|++++|.+++...
T Consensus       160 ~~~~~~~-L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~  238 (319)
T cd00116         160 ALRANRD-LKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGA  238 (319)
T ss_pred             HHHhCCC-cCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHH
Confidence            2222223 55555555555421    222233344566666665555432111    11 34555666666555553221


Q ss_pred             cccc-----CCCCCcEEeCCCCcccc----cCChhhhCCCCccEEEccCCcCCCC----CchhhhcC-CCCCEEECcCCc
Q 004704          379 GELF-----RSCKLVTLNLRDNTFSG----RIPHQINEHSNLRFLLLGGNHLQGP----IPDQLCQL-QKLAMMDLSRNK  444 (735)
Q Consensus       379 ~~~~-----~~~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l-~~L~~L~Ls~N~  444 (735)
                      ..+.     ..+.|+.|++++|.++.    .+...+..+++|+++++++|.+...    ....+... +.|+.+++.+|+
T Consensus       239 ~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (319)
T cd00116         239 AALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS  318 (319)
T ss_pred             HHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence            1111     12566666666666641    2233444456666666666666633    22233333 456666666654

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.71  E-value=2e-19  Score=155.41  Aligned_cols=90  Identities=28%  Similarity=0.507  Sum_probs=63.4

Q ss_pred             CCCccCCCCccEEEccCCcccccCcccccCCCCCcEEeCCCCcccccCChhhhCCCCccEEEccCCcCCCCCchhhhcCC
Q 004704          354 IASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQ  433 (735)
Q Consensus       354 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  433 (735)
                      ++..+.+...+.|.+++|+++ .+|+.+..+.+|+.|++.+|+|. .+|..+..++.|+.|+++-|++. ..|..|+.++
T Consensus        26 ~~gLf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p  102 (264)
T KOG0617|consen   26 LPGLFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFP  102 (264)
T ss_pred             cccccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCc
Confidence            344456667777777777776 44556777777777777777776 66777777777777777777776 6677777777


Q ss_pred             CCCEEECcCCcCC
Q 004704          434 KLAMMDLSRNKFS  446 (735)
Q Consensus       434 ~L~~L~Ls~N~l~  446 (735)
                      .|+.||+++|++.
T Consensus       103 ~levldltynnl~  115 (264)
T KOG0617|consen  103 ALEVLDLTYNNLN  115 (264)
T ss_pred             hhhhhhccccccc
Confidence            7777777777665

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.68  E-value=1.1e-18  Score=150.71  Aligned_cols=181  Identities=24%  Similarity=0.430  Sum_probs=154.6

Q ss_pred             ccCCCCCcEEeCCCCcccccCChhhhCCCCccEEEccCCcCCCCCchhhhcCCCCCEEECcCCcCCCCCCchhhcccccc
Q 004704          381 LFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWR  460 (735)
Q Consensus       381 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~  460 (735)
                      +..+...+.|-+++|+++ .+|..+..+.+|+.|++.+|++. .+|..++.+++|+.|+++-|++. ..|..|+.+    
T Consensus        29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~----  101 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSF----  101 (264)
T ss_pred             ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCC----
Confidence            456677889999999998 77888999999999999999998 78889999999999999999986 778877664    


Q ss_pred             cccCCccCCCCCCCcccchhhhcccCCCCCCCccccchhhhhhhhhhhhccccceeEEEEeccccccccCCcccccceEE
Q 004704          461 VGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLD  540 (735)
Q Consensus       461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~Ld  540 (735)
                                                                                               +.|+.||
T Consensus       102 -------------------------------------------------------------------------p~levld  108 (264)
T KOG0617|consen  102 -------------------------------------------------------------------------PALEVLD  108 (264)
T ss_pred             -------------------------------------------------------------------------chhhhhh
Confidence                                                                                     4566799


Q ss_pred             CCCCcccC-CCCccccccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccCCccccCCCCCCeEEcccCcCc
Q 004704          541 LSCNQLTG-EIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLS  619 (735)
Q Consensus       541 Ls~N~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~  619 (735)
                      |++|++.. ..|..|..+..|+.|+|+.|.+. .+|..++++++||.|.+..|.+. .+|.+++.++.|+.|.+.+|+++
T Consensus       109 ltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~  186 (264)
T KOG0617|consen  109 LTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT  186 (264)
T ss_pred             ccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee
Confidence            99998864 67888999999999999999999 78888999999999999999998 79999999999999999999999


Q ss_pred             ccCCCCCCCCcc---CCcccCCCCCCC
Q 004704          620 GRTPDKGQFATF---DESSYRGNPSLC  643 (735)
Q Consensus       620 ~~~p~~~~~~~~---~~~~~~gN~~lc  643 (735)
                      -..|+.+++.-.   .....+.|||.-
T Consensus       187 vlppel~~l~l~~~k~v~r~E~NPwv~  213 (264)
T KOG0617|consen  187 VLPPELANLDLVGNKQVMRMEENPWVN  213 (264)
T ss_pred             ecChhhhhhhhhhhHHHHhhhhCCCCC
Confidence            988887665433   233456788764

>PLN03150 hypothetical protein; Provisional

Probab=99.61  E-value=1.4e-15  Score=170.15  Aligned_cols=117  Identities=37%  Similarity=0.609  Sum_probs=104.5

Q ss_pred             ccceEECCCCcccCCCCccccccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccCCccccCCCCCCeEEcc
Q 004704          535 RVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVS  614 (735)
Q Consensus       535 ~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls  614 (735)
                      .++.|+|++|.++|.+|..++.+++|+.|+|++|.++|.+|..++.+++|+.|||++|+++|.+|..+..+++|++|+|+
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            47889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCcCcccCCCC--CCCCccCCcccCCCCCCCCccccCCC
Q 004704          615 YNNLSGRTPDK--GQFATFDESSYRGNPSLCAWLIQQKY  651 (735)
Q Consensus       615 ~N~l~~~~p~~--~~~~~~~~~~~~gN~~lc~~~~~~~~  651 (735)
                      +|+++|.+|..  ..+.......+.||+++|+.+....|
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C  537 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRAC  537 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCccccCCCCCCCC
Confidence            99999999973  22233445678999999986543444

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.39  E-value=1.5e-14  Score=148.07  Aligned_cols=171  Identities=30%  Similarity=0.509  Sum_probs=92.3

Q ss_pred             cEEEccCCcccccCcccccCCCCCcEEeCCCCcccccCChhhhCCCCccEEEccCCcCCCCCchhhhcCCCCCEEECcCC
Q 004704          364 EHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRN  443 (735)
Q Consensus       364 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N  443 (735)
                      ...+++.|++. .+|..+..+..|+.+.++.|.+. .+|..+.++..|++++|+.|++. .+|..++.|+ |+.|-+++|
T Consensus        78 ~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNN  153 (722)
T KOG0532|consen   78 VFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNN  153 (722)
T ss_pred             hhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecC
Confidence            34445555554 34555555555555555555555 55555555555666666666655 4555555554 555556666


Q ss_pred             cCCCCCCchhhcccccccccCCccCCCCCCCcccchhhhcccCCCCCCCccccchhhhhhhhhhhhccccceeEEEEecc
Q 004704          444 KFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKN  523 (735)
Q Consensus       444 ~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  523 (735)
                      +++ .+|+.++.                                                                    
T Consensus       154 kl~-~lp~~ig~--------------------------------------------------------------------  164 (722)
T KOG0532|consen  154 KLT-SLPEEIGL--------------------------------------------------------------------  164 (722)
T ss_pred             ccc-cCCccccc--------------------------------------------------------------------
Confidence            554 44443331                                                                    


Q ss_pred             ccccccCCcccccceEECCCCcccCCCCccccccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccCCcccc
Q 004704          524 RYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLT  603 (735)
Q Consensus       524 ~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~  603 (735)
                               ...|..||.++|++. .+|..++.+.+|+.|++..|++. ..|+.+..| .|..||+|.|+++ .||-.|.
T Consensus       165 ---------~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iPv~fr  231 (722)
T KOG0532|consen  165 ---------LPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLPVDFR  231 (722)
T ss_pred             ---------chhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecchhhh
Confidence                     133444555555555 45555555555555555555555 344444433 2555555655555 4555555


Q ss_pred             CCCCCCeEEcccCcCcc
Q 004704          604 ALNFLSIFNVSYNNLSG  620 (735)
Q Consensus       604 ~l~~L~~L~ls~N~l~~  620 (735)
                      +|..|++|-|.+|+|+.
T Consensus       232 ~m~~Lq~l~LenNPLqS  248 (722)
T KOG0532|consen  232 KMRHLQVLQLENNPLQS  248 (722)
T ss_pred             hhhhheeeeeccCCCCC
Confidence            55555555555555543

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.30  E-value=5.6e-12  Score=135.43  Aligned_cols=198  Identities=35%  Similarity=0.506  Sum_probs=121.0

Q ss_pred             EEEcccCCCCccCCCccCCCCccEEEccCCcccccCcccccCCC-CCcEEeCCCCcccccCChhhhCCCCccEEEccCCc
Q 004704          342 ILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSC-KLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNH  420 (735)
Q Consensus       342 ~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~  420 (735)
                      .++++.|.+...+......+.++.|++.+|.++.. +....... +|+.|++++|++. .+|..+..+++|+.|++++|+
T Consensus        97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i-~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~  174 (394)
T COG4886          97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDI-PPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFND  174 (394)
T ss_pred             eeeccccccccCchhhhcccceeEEecCCcccccC-ccccccchhhcccccccccchh-hhhhhhhccccccccccCCch
Confidence            45555555544444434455666666666666633 33344442 6777777777776 455566677777777777777


Q ss_pred             CCCCCchhhhcCCCCCEEECcCCcCCCCCCchhhcccccccccCCccCCCCCCCcccchhhhcccCCCCCCCccccchhh
Q 004704          421 LQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWR  500 (735)
Q Consensus       421 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  500 (735)
                      +. .+|......+.|+.|++++|++. .+|.....                                             
T Consensus       175 l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~---------------------------------------------  207 (394)
T COG4886         175 LS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIEL---------------------------------------------  207 (394)
T ss_pred             hh-hhhhhhhhhhhhhheeccCCccc-cCchhhhh---------------------------------------------
Confidence            76 45555546677777777777775 33332110                                             


Q ss_pred             hhhhhhhhhccccceeEEEEeccccccccCCcccccceEECCCCcccCCCCccccccccCCeEeCCCCcCcccCcccccC
Q 004704          501 WLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSN  580 (735)
Q Consensus       501 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~  580 (735)
                                                      ...|+++++++|... .++..+..+..+..|.+++|++. ..+..++.
T Consensus       208 --------------------------------~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~  253 (394)
T COG4886         208 --------------------------------LSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGN  253 (394)
T ss_pred             --------------------------------hhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhcc
Confidence                                            123555666666443 45556666777777777777766 34566677


Q ss_pred             cCCCCEEeCCCCcccccCCccccCCCCCCeEEcccCcCcccCCC
Q 004704          581 LKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPD  624 (735)
Q Consensus       581 l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~  624 (735)
                      +++++.|++++|+++ .++. +..+..++.|++++|.++...|.
T Consensus       254 l~~l~~L~~s~n~i~-~i~~-~~~~~~l~~L~~s~n~~~~~~~~  295 (394)
T COG4886         254 LSNLETLDLSNNQIS-SISS-LGSLTNLRELDLSGNSLSNALPL  295 (394)
T ss_pred             ccccceecccccccc-cccc-ccccCccCEEeccCccccccchh
Confidence            777777777777777 3333 66677777777777777666554

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.26  E-value=2.2e-13  Score=139.76  Aligned_cols=193  Identities=28%  Similarity=0.447  Sum_probs=155.8

Q ss_pred             CCCEEEccCCCCCCcCcccccCCCCCCEEEccccccCccccccccCCCCCCEEEeeCCccCCCCCchhhhhcccCcEEEc
Q 004704          242 SLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSM  321 (735)
Q Consensus       242 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l  321 (735)
                      .-...|++.|++. .+|..+..+..|+.+.++.|.+. .+|..+..+..|++++++.|+++ .+|..++.++  |+.|-+
T Consensus        76 dt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp--Lkvli~  150 (722)
T KOG0532|consen   76 DTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP--LKVLIV  150 (722)
T ss_pred             chhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc--ceeEEE
Confidence            3445677777777 56677777778888888888887 77888888889999999999998 8888888876  899999


Q ss_pred             CCCcCCCCCCccCCCCCCCCEEEcccCCCCccCCCccCCCCccEEEccCCcccccCcccccCCCCCcEEeCCCCcccccC
Q 004704          322 SKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRI  401 (735)
Q Consensus       322 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~  401 (735)
                      ++|+++ .+|..++....|..||.+.|.+...++...++.+|+.|.+..|++.. +|+.+. .-.|..||++.|+++ .+
T Consensus       151 sNNkl~-~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~-lp~El~-~LpLi~lDfScNkis-~i  226 (722)
T KOG0532|consen  151 SNNKLT-SLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLED-LPEELC-SLPLIRLDFSCNKIS-YL  226 (722)
T ss_pred             ecCccc-cCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhh-CCHHHh-CCceeeeecccCcee-ec
Confidence            999988 67888888889999999999988777777788999999999999874 456666 446899999999998 88


Q ss_pred             ChhhhCCCCccEEEccCCcCCCCCchhhhcCCC---CCEEECcCCc
Q 004704          402 PHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQK---LAMMDLSRNK  444 (735)
Q Consensus       402 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~---L~~L~Ls~N~  444 (735)
                      |..|..+..|++|-|.+|.++ ..|..++-...   .++|+..-|+
T Consensus       227 Pv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q  271 (722)
T KOG0532|consen  227 PVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ  271 (722)
T ss_pred             chhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence            999999999999999999998 56766664433   3456666553

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.21  E-value=2.2e-11  Score=130.87  Aligned_cols=201  Identities=30%  Similarity=0.449  Sum_probs=140.2

Q ss_pred             EEEcCCCcCCCCCCccCCCCCCCCEEEcccCCCCccCCCccCCC-CccEEEccCCcccccCcccccCCCCCcEEeCCCCc
Q 004704          318 ILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLS-SVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNT  396 (735)
Q Consensus       318 ~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~  396 (735)
                      .++...+.+.. ....+...+.++.+++.+|.++...+...... +|+.|++++|.+. .+|..+..+++|+.|++++|+
T Consensus        97 ~l~~~~~~~~~-~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~  174 (394)
T COG4886          97 SLDLNLNRLRS-NISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFND  174 (394)
T ss_pred             eeecccccccc-CchhhhcccceeEEecCCcccccCccccccchhhcccccccccchh-hhhhhhhccccccccccCCch
Confidence            35555555431 12223344567777777777765554444443 7777777777776 334567788888888888888


Q ss_pred             ccccCChhhhCCCCccEEEccCCcCCCCCchhhhcCCCCCEEECcCCcCCCCCCchhhcccccccccCCccCCCCCCCcc
Q 004704          397 FSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPE  476 (735)
Q Consensus       397 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~  476 (735)
                      ++ .+|...+..++|+.|++++|++. .+|........|+++++++|++. ..+..+.+                     
T Consensus       175 l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~---------------------  230 (394)
T COG4886         175 LS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSN---------------------  230 (394)
T ss_pred             hh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhh---------------------
Confidence            88 56666557788999999999988 67766666677889999988632 22222222                     


Q ss_pred             cchhhhcccCCCCCCCccccchhhhhhhhhhhhccccceeEEEEeccccccccCCcccccceEECCCCcccCCCCccccc
Q 004704          477 LDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQ  556 (735)
Q Consensus       477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~  556 (735)
                                                                              +..+..+.+++|++. .++..++.
T Consensus       231 --------------------------------------------------------~~~l~~l~l~~n~~~-~~~~~~~~  253 (394)
T COG4886         231 --------------------------------------------------------LKNLSGLELSNNKLE-DLPESIGN  253 (394)
T ss_pred             --------------------------------------------------------cccccccccCCceee-eccchhcc
Confidence                                                                    234555678888877 45778888


Q ss_pred             cccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccCCcccc
Q 004704          557 LQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLT  603 (735)
Q Consensus       557 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~  603 (735)
                      +++++.|++++|.++. ++. ++.+.+++.||+++|.++...|....
T Consensus       254 l~~l~~L~~s~n~i~~-i~~-~~~~~~l~~L~~s~n~~~~~~~~~~~  298 (394)
T COG4886         254 LSNLETLDLSNNQISS-ISS-LGSLTNLRELDLSGNSLSNALPLIAL  298 (394)
T ss_pred             ccccceeccccccccc-ccc-ccccCccCEEeccCccccccchhhhc
Confidence            9999999999999994 444 89999999999999999876665443

>PLN03150 hypothetical protein; Provisional

Probab=99.19  E-value=3.4e-11  Score=135.15  Aligned_cols=90  Identities=32%  Similarity=0.541  Sum_probs=83.0

Q ss_pred             cccceEECCCCcccCCCCccccccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccCCccccCC-CCCCeEE
Q 004704          534 NRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTAL-NFLSIFN  612 (735)
Q Consensus       534 ~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l-~~L~~L~  612 (735)
                      ++|+.|+|++|+++|.+|..++.+++|+.|+|++|+++|.+|+.++++++|+.|||++|+++|.+|..+..+ ..+..++
T Consensus       442 ~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~  521 (623)
T PLN03150        442 RHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFN  521 (623)
T ss_pred             CCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEE
Confidence            578889999999999999999999999999999999999999999999999999999999999999998864 4678999


Q ss_pred             cccCcCcccCC
Q 004704          613 VSYNNLSGRTP  623 (735)
Q Consensus       613 ls~N~l~~~~p  623 (735)
                      +++|...+..|
T Consensus       522 ~~~N~~lc~~p  532 (623)
T PLN03150        522 FTDNAGLCGIP  532 (623)
T ss_pred             ecCCccccCCC
Confidence            99998766555

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.16  E-value=6e-12  Score=122.25  Aligned_cols=238  Identities=21%  Similarity=0.215  Sum_probs=148.9

Q ss_pred             ccCCCCCCCEEeCCCCcCCCC----cchhhhCCCCCCEEeCCCCcccc----cCCh------hhhhcCCCCCeeeccccc
Q 004704           15 CLKNLTRLKILDISSNQLNGS----LPSVISNLTSLEYLDLSHNNFEG----MFPL------SSLANHSKLEGLLLSTRN   80 (735)
Q Consensus        15 ~~~~l~~L~~L~Ls~n~i~~~----~p~~~~~l~~L~~L~Ls~n~l~~----~~~~------~~~~~l~~L~~L~L~~~~   80 (735)
                      .+-.+..++.++||+|.+...    +...+.+.++|+..++|+- ++|    .+|.      .++.++++|++++||+|-
T Consensus        25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA  103 (382)
T KOG1909|consen   25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA  103 (382)
T ss_pred             HhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc
Confidence            344566777788888777632    3344556677777777642 222    2331      235566777777777776


Q ss_pred             ccccccCC---CCCCCCCeeEEEeeCCCCCCCCch-------------hhhCCCCCCEEEccCCcCcccCc----hHHHh
Q 004704           81 NTLHVKTE---NWLPTSQLIVLGLTKCNLNGSYPD-------------FLLHQYHLKYLDLSHNKLVGNFP----TWLLR  140 (735)
Q Consensus        81 ~~~~~~~~---~~~~~~~L~~L~L~~n~l~~~~~~-------------~l~~l~~L~~L~Ls~n~l~~~~p----~~~~~  140 (735)
                      +.......   -+..+..|++|.|.+|.+...--.             ....-+.|++++.++|++. ..+    ...++
T Consensus       104 ~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrle-n~ga~~~A~~~~  182 (382)
T KOG1909|consen  104 FGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLE-NGGATALAEAFQ  182 (382)
T ss_pred             cCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccc-cccHHHHHHHHH
Confidence            64443322   224567788888888877632111             1234467888888888875 322    23456


Q ss_pred             CCCCCcEEECcCCcCccc----CcCCcCCCCCcCEEEccCCcCCCcCChhHHHh---cccCcEEECcCCcCCCCCCccc-
Q 004704          141 NNPKLEVLLLKNNSFSGI----LQLPKAKHDFLHHLDISCNNFRGKLPHNMGVI---LQKLMYMDISKNCFEGNIPYSA-  212 (735)
Q Consensus       141 ~l~~L~~L~L~~n~l~~~----~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~---l~~L~~L~L~~n~l~~~~~~~l-  212 (735)
                      ..+.|+.+.+..|.|...    ....+..+++|+.|||.+|.++......+...   +++|++|++++|.+...-..++ 
T Consensus       183 ~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~  262 (382)
T KOG1909|consen  183 SHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFV  262 (382)
T ss_pred             hccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHH
Confidence            678888888888877532    23446678888888888888764433333322   4578888888887765333222 


Q ss_pred             ----CCCCCCCEEECCCccccCccch---hhhhCCCCCCEEEccCCCCC
Q 004704          213 ----GEMKELSLLDLSRNYFSGGLSQ---SVVTGCFSLELLDLSNNNFE  254 (735)
Q Consensus       213 ----~~l~~L~~L~L~~n~l~~~~~~---~~~~~l~~L~~L~L~~n~l~  254 (735)
                          ...+.|++|.+.+|.++..-..   ......+.|+.|+|++|.+.
T Consensus       263 ~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~  311 (382)
T KOG1909|consen  263 DALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG  311 (382)
T ss_pred             HHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence                2467899999999988732111   11223678899999999883

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.16  E-value=8.1e-12  Score=124.62  Aligned_cols=216  Identities=26%  Similarity=0.287  Sum_probs=112.0

Q ss_pred             CCCCCCCEEeCCCCcCCCCcc--hhhhCCCCCCEEeCCCCcccccCCh-hhhhcCCCCCeeecccccccccccCCCCCCC
Q 004704           17 KNLTRLKILDISSNQLNGSLP--SVISNLTSLEYLDLSHNNFEGMFPL-SSLANHSKLEGLLLSTRNNTLHVKTENWLPT   93 (735)
Q Consensus        17 ~~l~~L~~L~Ls~n~i~~~~p--~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~   93 (735)
                      +++++|+...|.+..+. ..+  +....|++++.||||+|-|+.-.+. .....+++|+.|+++.|.+........-.  
T Consensus       118 sn~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~--  194 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTL--  194 (505)
T ss_pred             hhHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchh--
Confidence            46777888888877766 333  3566788888888888877643332 22345666666666655543332222111  


Q ss_pred             CCeeEEEeeCCCCCCCCchhhhCCCCCCEEEccCCcCcccCchHHHhCCCCCcEEECcCCcCcccCcCCcCCCCCcCEEE
Q 004704           94 SQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLD  173 (735)
Q Consensus        94 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~  173 (735)
                                            .+++|+.|.|+.|.++-.--.++...+|+|+.|+|..|....+.......++.|++||
T Consensus       195 ----------------------~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~Ld  252 (505)
T KOG3207|consen  195 ----------------------LLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELD  252 (505)
T ss_pred             ----------------------hhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhcc
Confidence                                  3445566666666554222233334566667777666653333334444556666666


Q ss_pred             ccCCcCCCcCC-hhHHHhcccCcEEECcCCcCCCC-CCcccCCCCCCCEEECCCccccCccchhhhhCCCCCCEEEccCC
Q 004704          174 ISCNNFRGKLP-HNMGVILQKLMYMDISKNCFEGN-IPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNN  251 (735)
Q Consensus       174 Ls~n~l~~~~~-~~~~~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n  251 (735)
                      |++|++. ..+ ...-..++.|+.|+++.|.+... +|+.       .             ..+.....++|++|++..|
T Consensus       253 Ls~N~li-~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~-------~-------------s~~kt~~f~kL~~L~i~~N  311 (505)
T KOG3207|consen  253 LSNNNLI-DFDQGYKVGTLPGLNQLNLSSTGIASIAEPDV-------E-------------SLDKTHTFPKLEYLNISEN  311 (505)
T ss_pred             ccCCccc-ccccccccccccchhhhhccccCcchhcCCCc-------c-------------chhhhcccccceeeecccC
Confidence            6666655 222 11112255666666666655421 1111       0             0000123445666666666


Q ss_pred             CCCCc-CcccccCCCCCCEEEccccccC
Q 004704          252 NFEGQ-FFSEYMNLTRLRHLYFENNNFS  278 (735)
Q Consensus       252 ~l~~~-~~~~~~~l~~L~~L~L~~n~l~  278 (735)
                      ++... .-..+..+++|+.|.+..|.+.
T Consensus       312 ~I~~w~sl~~l~~l~nlk~l~~~~n~ln  339 (505)
T KOG3207|consen  312 NIRDWRSLNHLRTLENLKHLRITLNYLN  339 (505)
T ss_pred             ccccccccchhhccchhhhhhccccccc
Confidence            55321 1123344556666666666665

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.14  E-value=8.9e-12  Score=118.03  Aligned_cols=88  Identities=25%  Similarity=0.289  Sum_probs=63.7

Q ss_pred             ccccceEECCCCcccCCCCccccccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCccccc-CCccccCCCCCCeE
Q 004704          533 VNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQ-IPPQLTALNFLSIF  611 (735)
Q Consensus       533 l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~-~p~~l~~l~~L~~L  611 (735)
                      +++|+.||||+|.++ .+-..=..+.+.++|+|++|.|.. . ..++++-+|..||+++|+|... --..++++|.|+++
T Consensus       328 L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~-L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l  404 (490)
T KOG1259|consen  328 LPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIET-L-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETL  404 (490)
T ss_pred             cccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHhh-h-hhhHhhhhheeccccccchhhHHHhcccccccHHHHH
Confidence            356777777777776 444444566777888888888773 2 3477788888888888888643 23467888999999


Q ss_pred             EcccCcCcccCC
Q 004704          612 NVSYNNLSGRTP  623 (735)
Q Consensus       612 ~ls~N~l~~~~p  623 (735)
                      .+.+|++++.+.
T Consensus       405 ~L~~NPl~~~vd  416 (490)
T KOG1259|consen  405 RLTGNPLAGSVD  416 (490)
T ss_pred             hhcCCCccccch
Confidence            999999887654

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.13  E-value=1.5e-11  Score=122.73  Aligned_cols=162  Identities=20%  Similarity=0.169  Sum_probs=92.2

Q ss_pred             CCCCeeEEEeeCCCCCCCCc-hhhhCCCCCCEEEccCCcCcccCc-hHHHhCCCCCcEEECcCCcCcccCcCC-cCCCCC
Q 004704           92 PTSQLIVLGLTKCNLNGSYP-DFLLHQYHLKYLDLSHNKLVGNFP-TWLLRNNPKLEVLLLKNNSFSGILQLP-KAKHDF  168 (735)
Q Consensus        92 ~~~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~p-~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~~~~  168 (735)
                      +..+|+++.|.++.+..... .....|++++.||||.|-+..-.| ..+...+|+|+.|+++.|++....... -..+++
T Consensus       119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~  198 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH  198 (505)
T ss_pred             hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence            34578888888887763322 456778888899998887752211 234567888888888888776432211 124566


Q ss_pred             cCEEEccCCcCCCcCChhHHHhcccCcEEECcCCcCCCCCCcccCCCCCCCEEECCCccccCccc-hhhhhCCCCCCEEE
Q 004704          169 LHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLS-QSVVTGCFSLELLD  247 (735)
Q Consensus       169 L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~~l~~L~~L~  247 (735)
                      |+.|.++.|.++..--..+...+|+|+.|++..|..-........-+..|++|||++|.+.. .+ -.....++.|+.|+
T Consensus       199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~-~~~~~~~~~l~~L~~Ln  277 (505)
T KOG3207|consen  199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID-FDQGYKVGTLPGLNQLN  277 (505)
T ss_pred             hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccc-cccccccccccchhhhh
Confidence            77777777776633333344446667777776664222222233344556666666655542 22 11122344555555


Q ss_pred             ccCCCCC
Q 004704          248 LSNNNFE  254 (735)
Q Consensus       248 L~~n~l~  254 (735)
                      ++.+.+.
T Consensus       278 ls~tgi~  284 (505)
T KOG3207|consen  278 LSSTGIA  284 (505)
T ss_pred             ccccCcc
Confidence            5555444

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.10  E-value=2e-11  Score=118.62  Aligned_cols=252  Identities=21%  Similarity=0.152  Sum_probs=128.4

Q ss_pred             hhhhCCCCCCEEeCCCCcccccCC---hhhhhcCCCCCeeecccccccccccC----------CCCCCCCCeeEEEeeCC
Q 004704           38 SVISNLTSLEYLDLSHNNFEGMFP---LSSLANHSKLEGLLLSTRNNTLHVKT----------ENWLPTSQLIVLGLTKC  104 (735)
Q Consensus        38 ~~~~~l~~L~~L~Ls~n~l~~~~~---~~~~~~l~~L~~L~L~~~~~~~~~~~----------~~~~~~~~L~~L~L~~n  104 (735)
                      +.......++.++||+|.|.....   ...+.+.++|+..++++- +++....          .++..+++|++|+|++|
T Consensus        24 ~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDN  102 (382)
T KOG1909|consen   24 EELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDN  102 (382)
T ss_pred             HHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeecccc
Confidence            445677899999999998842211   134567778888887742 1111111          13334445555555555


Q ss_pred             CCCCCCch----hhhCCCCCCEEEccCCcCcccCchHHHhCCCCCcEEECcCCcCcccCcCCcCCCCCcCEEEccCCcCC
Q 004704          105 NLNGSYPD----FLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFR  180 (735)
Q Consensus       105 ~l~~~~~~----~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~  180 (735)
                      .+....+.    .+.++..|++|.|.+|.+.-.-...+.+.   |..|.         .......-+.|+++..++|++.
T Consensus       103 A~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~a---l~~l~---------~~kk~~~~~~Lrv~i~~rNrle  170 (382)
T KOG1909|consen  103 AFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRA---LFELA---------VNKKAASKPKLRVFICGRNRLE  170 (382)
T ss_pred             ccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHH---HHHHH---------HHhccCCCcceEEEEeeccccc
Confidence            55433222    22344555555555554421100000000   00000         0111223455666666666654


Q ss_pred             CcCCh---hHHHhcccCcEEECcCCcCCC----CCCcccCCCCCCCEEECCCccccCccchh---hhhCCCCCCEEEccC
Q 004704          181 GKLPH---NMGVILQKLMYMDISKNCFEG----NIPYSAGEMKELSLLDLSRNYFSGGLSQS---VVTGCFSLELLDLSN  250 (735)
Q Consensus       181 ~~~~~---~~~~~l~~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~L~~n~l~~~~~~~---~~~~l~~L~~L~L~~  250 (735)
                      ..-..   ..++..+.|+.+.++.|.|..    .+...+..+++|+.|||..|-++......   .+...++|+.|++++
T Consensus       171 n~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~d  250 (382)
T KOG1909|consen  171 NGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGD  250 (382)
T ss_pred             cccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccc
Confidence            22111   123334566666666665532    12234556677777777777665322211   223345677777777


Q ss_pred             CCCCCcCcccc-----cCCCCCCEEEccccccCcc----ccccccCCCCCCEEEeeCCccC
Q 004704          251 NNFEGQFFSEY-----MNLTRLRHLYFENNNFSGK----IKDGLLSSTSLQVLDISNNMLS  302 (735)
Q Consensus       251 n~l~~~~~~~~-----~~l~~L~~L~L~~n~l~~~----~~~~l~~~~~L~~L~l~~n~l~  302 (735)
                      |.+......+|     ...++|+.|.+.+|.++..    +...+...+.|..|++++|++.
T Consensus       251 cll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~  311 (382)
T KOG1909|consen  251 CLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG  311 (382)
T ss_pred             cccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence            77664333332     2356777777777777632    2223445677888888888873

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.04  E-value=5.2e-11  Score=112.92  Aligned_cols=129  Identities=29%  Similarity=0.372  Sum_probs=69.7

Q ss_pred             CCCCCEEEeeCCccCCCCCchhhhhcccCcEEEcCCCcCCCCCCccCCCCCCCCEEEcccCCCCccCCCccCCCCccEEE
Q 004704          288 STSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLS  367 (735)
Q Consensus       288 ~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~  367 (735)
                      ...|+++|+++|.|+ .+.+++.-.|. ++.|++++|.+...  ..+..+++|+.||+++|.++........+.+.+.|.
T Consensus       283 Wq~LtelDLS~N~I~-~iDESvKL~Pk-ir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~  358 (490)
T KOG1259|consen  283 WQELTELDLSGNLIT-QIDESVKLAPK-LRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLK  358 (490)
T ss_pred             Hhhhhhccccccchh-hhhhhhhhccc-eeEEeccccceeee--hhhhhcccceEeecccchhHhhhhhHhhhcCEeeee
Confidence            355666666666666 55555555554 66666666666532  125566666666666666654332222555666666


Q ss_pred             ccCCcccccCcccccCCCCCcEEeCCCCccccc-CChhhhCCCCccEEEccCCcCC
Q 004704          368 LQKNALNGLIPGELFRSCKLVTLNLRDNTFSGR-IPHQINEHSNLRFLLLGGNHLQ  422 (735)
Q Consensus       368 l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~  422 (735)
                      +++|.+...  ..+..+-+|..||+++|+|... -...++++|.|+.+.|.+|++.
T Consensus       359 La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~  412 (490)
T KOG1259|consen  359 LAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA  412 (490)
T ss_pred             hhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence            666655432  2344445555555555555421 1123445555555555555554

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.03  E-value=4.3e-10  Score=103.01  Aligned_cols=129  Identities=24%  Similarity=0.201  Sum_probs=46.6

Q ss_pred             CCCCCCEEEccCCcCcccCchHHHhCCCCCcEEECcCCcCcccCcCCcCCCCCcCEEEccCCcCCCcCChhHHHhcccCc
Q 004704          116 HQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLM  195 (735)
Q Consensus       116 ~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~  195 (735)
                      +..++++|+|++|.|+ .+. .+...+.+|+.|++++|.++.+.  .+..++.|++|++++|.++ .++..+...+++|+
T Consensus        17 n~~~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~~l~--~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~   91 (175)
T PF14580_consen   17 NPVKLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQITKLE--GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQ   91 (175)
T ss_dssp             ---------------------S--TT-TT--EEE-TTS--S--T--T----TT--EEE--SS----S-CHHHHHH-TT--
T ss_pred             cccccccccccccccc-ccc-chhhhhcCCCEEECCCCCCcccc--CccChhhhhhcccCCCCCC-ccccchHHhCCcCC
Confidence            4445677777777765 443 23224567777777777776653  4556788888888888887 66665555578888


Q ss_pred             EEECcCCcCCCC-CCcccCCCCCCCEEECCCccccCcc--chhhhhCCCCCCEEEcc
Q 004704          196 YMDISKNCFEGN-IPYSAGEMKELSLLDLSRNYFSGGL--SQSVVTGCFSLELLDLS  249 (735)
Q Consensus       196 ~L~L~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~--~~~~~~~l~~L~~L~L~  249 (735)
                      +|++++|++... .-..+..+++|+.|++.+|.++..-  -..++..+++|+.||-.
T Consensus        92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~  148 (175)
T PF14580_consen   92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ  148 (175)
T ss_dssp             EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred             EEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence            888888888642 1234567888888888888876321  12334557777777653

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.96  E-value=9.6e-10  Score=100.70  Aligned_cols=122  Identities=24%  Similarity=0.296  Sum_probs=41.0

Q ss_pred             CcEEEcCCCcCCCCCCccCC-CCCCCCEEEcccCCCCccCCCccCCCCccEEEccCCcccccCcccccCCCCCcEEeCCC
Q 004704          316 LEILSMSKNHLEGNVPVQLN-NLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRD  394 (735)
Q Consensus       316 L~~L~l~~n~l~~~~~~~l~-~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~  394 (735)
                      +++|++++|.|+.+  +.+. .+.+|+.|++++|.++.. .....++.|++|++++|+++...+.....+++|+.|++++
T Consensus        21 ~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l-~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~   97 (175)
T PF14580_consen   21 LRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL-EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSN   97 (175)
T ss_dssp             -----------------S--TT-TT--EEE-TTS--S---TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-TT
T ss_pred             cccccccccccccc--cchhhhhcCCCEEECCCCCCccc-cCccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcC
Confidence            56666666666532  1233 355666666666666532 2333566666667777766644222223467777777777


Q ss_pred             CcccccC-ChhhhCCCCccEEEccCCcCCCCC---chhhhcCCCCCEEEC
Q 004704          395 NTFSGRI-PHQINEHSNLRFLLLGGNHLQGPI---PDQLCQLQKLAMMDL  440 (735)
Q Consensus       395 n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~---~~~~~~l~~L~~L~L  440 (735)
                      |+|...- -..+..+++|+.|++.+|++....   ...+..+|+|+.||-
T Consensus        98 N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen   98 NKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             S---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred             CcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence            7775321 134566777888888888776332   234667788887764

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.94  E-value=5.2e-10  Score=84.06  Aligned_cols=60  Identities=43%  Similarity=0.592  Sum_probs=39.1

Q ss_pred             cCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccCCccccCCCCCCeEEcccCcC
Q 004704          559 AILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNL  618 (735)
Q Consensus       559 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l  618 (735)
                      +|++|++++|+++...++.|.++++|++||+++|+++...|..|.++++|++|++++|+|
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            466666666666655555666666666666666666666666666666666666666654

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.88  E-value=1.3e-09  Score=81.98  Aligned_cols=61  Identities=41%  Similarity=0.576  Sum_probs=56.6

Q ss_pred             cccceEECCCCcccCCCCccccccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcc
Q 004704          534 NRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKL  594 (735)
Q Consensus       534 ~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l  594 (735)
                      ++|+.|++++|+++...+..|..+++|++|++++|.++...|+.|.++++|++|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            4688999999999966668899999999999999999988889999999999999999986

...

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.82  E-value=5e-10  Score=120.36  Aligned_cols=85  Identities=22%  Similarity=0.270  Sum_probs=56.9

Q ss_pred             cceEECCCCcccCCCCccccccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCccccc---CCcc-ccCCCCCCeE
Q 004704          536 VTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQ---IPPQ-LTALNFLSIF  611 (735)
Q Consensus       536 L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~---~p~~-l~~l~~L~~L  611 (735)
                      |+.+++++|.+. .++..+..+..+..|++++|++...-  .+.....+..+.++.|.+...   .... ....+.+...
T Consensus       234 L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (414)
T KOG0531|consen  234 LRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNLE--GLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTL  310 (414)
T ss_pred             HHHHhcccCccc-cccccccccccccccchhhccccccc--cccccchHHHhccCcchhcchhhhhcccccccccccccc
Confidence            566778888776 44466777778888888888877432  255666777777777776522   2222 4556777888


Q ss_pred             EcccCcCcccCC
Q 004704          612 NVSYNNLSGRTP  623 (735)
Q Consensus       612 ~ls~N~l~~~~p  623 (735)
                      .+.+|+.....+
T Consensus       311 ~~~~~~~~~~~~  322 (414)
T KOG0531|consen  311 TLELNPIRKISS  322 (414)
T ss_pred             ccccCccccccc
Confidence            888887766554

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.77  E-value=5.4e-09  Score=119.95  Aligned_cols=126  Identities=29%  Similarity=0.395  Sum_probs=61.1

Q ss_pred             CCCEEEccCCcCcccCchHHHhCCCCCcEEECcCCc--CcccCcCCcCCCCCcCEEEccCCcCCCcCChhHHHhcccCcE
Q 004704          119 HLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNS--FSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMY  196 (735)
Q Consensus       119 ~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~--l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~  196 (735)
                      ..+...+-+|.+. .++...  .++.|++|-+..|.  +..+....|..++.|++||+++|.--+.+|..++. +-+|++
T Consensus       524 ~~rr~s~~~~~~~-~~~~~~--~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~-Li~Lry  599 (889)
T KOG4658|consen  524 SVRRMSLMNNKIE-HIAGSS--ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGE-LVHLRY  599 (889)
T ss_pred             heeEEEEeccchh-hccCCC--CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhh-hhhhhc
Confidence            4445555555443 333221  34455555555553  33333333445555555555554433355555554 445555


Q ss_pred             EECcCCcCCCCCCcccCCCCCCCEEECCCccccCccchhhhhCCCCCCEEEccC
Q 004704          197 MDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSN  250 (735)
Q Consensus       197 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~  250 (735)
                      |+++++.++ .+|..+++++.|.+|++..+.-...+ ..+...+.+|++|.+..
T Consensus       600 L~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~-~~i~~~L~~Lr~L~l~~  651 (889)
T KOG4658|consen  600 LDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESI-PGILLELQSLRVLRLPR  651 (889)
T ss_pred             ccccCCCcc-ccchHHHHHHhhheeccccccccccc-cchhhhcccccEEEeec
Confidence            555555555 45555555555555555554433222 22333355555555544

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.77  E-value=1.2e-09  Score=117.51  Aligned_cols=246  Identities=27%  Similarity=0.168  Sum_probs=138.5

Q ss_pred             CCCCCCEEeCCCCcCCCCcchhhhCCCCCCEEeCCCCcccccCChhhhhcCCCCCeeecccccccccccCCCCCCCCCee
Q 004704           18 NLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLI   97 (735)
Q Consensus        18 ~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~   97 (735)
                      .+..++.+++..|.+.. +-..+..+++|+.|++.+|+|.....  .+..+++|++|++++|.+....+   +..++.|+
T Consensus        70 ~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i~~--~l~~~~~L~~L~ls~N~I~~i~~---l~~l~~L~  143 (414)
T KOG0531|consen   70 SLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKIEN--LLSSLVNLQVLDLSFNKITKLEG---LSTLTLLK  143 (414)
T ss_pred             HhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhccc--chhhhhcchheeccccccccccc---hhhccchh
Confidence            34555555566665552 22335555666666666666553221  14556666666666655543332   23344466


Q ss_pred             EEEeeCCCCCCCCchhhhCCCCCCEEEccCCcCcccCchHHHhCCCCCcEEECcCCcCcccCcCCcCCCCCcCEEEccCC
Q 004704           98 VLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCN  177 (735)
Q Consensus        98 ~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n  177 (735)
                      .|++.+|.+...  ..+..++.|+.+++++|.+. .+.......+.+++.+++.+|.+..+.  .+..+..+..+++..|
T Consensus       144 ~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~-~ie~~~~~~~~~l~~l~l~~n~i~~i~--~~~~~~~l~~~~l~~n  218 (414)
T KOG0531|consen  144 ELNLSGNLISDI--SGLESLKSLKLLDLSYNRIV-DIENDELSELISLEELDLGGNSIREIE--GLDLLKKLVLLSLLDN  218 (414)
T ss_pred             hheeccCcchhc--cCCccchhhhcccCCcchhh-hhhhhhhhhccchHHHhccCCchhccc--chHHHHHHHHhhcccc
Confidence            777777766632  23444677777777777776 443310236677777777777776543  2223334444567777


Q ss_pred             cCCCcCChhHHHhcc--cCcEEECcCCcCCCCCCcccCCCCCCCEEECCCccccCccchhhhhCCCCCCEEEccCCCCCC
Q 004704          178 NFRGKLPHNMGVILQ--KLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEG  255 (735)
Q Consensus       178 ~l~~~~~~~~~~~l~--~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~  255 (735)
                      .++..-+...   +.  .|+.+++++|.+. ..+..+..++.+..+++..|++... .  -......+..+....|.+..
T Consensus       219 ~i~~~~~l~~---~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~-~--~~~~~~~~~~~~~~~~~~~~  291 (414)
T KOG0531|consen  219 KISKLEGLNE---LVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNL-E--GLERLPKLSELWLNDNKLAL  291 (414)
T ss_pred             cceeccCccc---chhHHHHHHhcccCccc-cccccccccccccccchhhcccccc-c--cccccchHHHhccCcchhcc
Confidence            6652111111   12  3777888888776 3445667778888888888877621 1  12334556666666666542


Q ss_pred             c---Ccc-cccCCCCCCEEEccccccCccc
Q 004704          256 Q---FFS-EYMNLTRLRHLYFENNNFSGKI  281 (735)
Q Consensus       256 ~---~~~-~~~~l~~L~~L~L~~n~l~~~~  281 (735)
                      .   ... .....+.++...+..|.+....
T Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (414)
T KOG0531|consen  292 SEAISQEYITSAAPTLVTLTLELNPIRKIS  321 (414)
T ss_pred             hhhhhccccccccccccccccccCcccccc
Confidence            1   111 1345677788888887766443

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.71  E-value=2e-08  Score=115.39  Aligned_cols=59  Identities=25%  Similarity=0.302  Sum_probs=37.0

Q ss_pred             ccccceEECCCCcccCCCCccccccccCCeEeCCCCcCccc-CcccccCcCCCCEEeCCC
Q 004704          533 VNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGS-IPESFSNLKMIESLDISY  591 (735)
Q Consensus       533 l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~LdLs~  591 (735)
                      .++|+.|.+.++.....+.+....+..++.+-+..+.+.+. .-...++++++..+.+++
T Consensus       769 ~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~  828 (889)
T KOG4658|consen  769 APHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPLSF  828 (889)
T ss_pred             cCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEecccCc
Confidence            47788888887776656655666666676666777777655 233455555555544443

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.61  E-value=2.1e-09  Score=102.16  Aligned_cols=180  Identities=23%  Similarity=0.212  Sum_probs=125.3

Q ss_pred             CCCCEEEccCCcCcccCchHHHhCCCCCcEEECcCCcCcccCcCCcCCCCCcCEEEccCCc-CCCcCChhHHHhcccCcE
Q 004704          118 YHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNN-FRGKLPHNMGVILQKLMY  196 (735)
Q Consensus       118 ~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~  196 (735)
                      +.|++||||+..++..--..+...|.+|+.|.+.++++...+...+.+-.+|+.|+++.+. ++.....-++..|+.|.+
T Consensus       185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~  264 (419)
T KOG2120|consen  185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE  264 (419)
T ss_pred             hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence            3588999998888755555566788899999999999988877788888899999998754 443333445566888999


Q ss_pred             EECcCCcCCCCCCccc-C-CCCCCCEEECCCcccc--CccchhhhhCCCCCCEEEccCC-CCCCcCcccccCCCCCCEEE
Q 004704          197 MDISKNCFEGNIPYSA-G-EMKELSLLDLSRNYFS--GGLSQSVVTGCFSLELLDLSNN-NFEGQFFSEYMNLTRLRHLY  271 (735)
Q Consensus       197 L~L~~n~l~~~~~~~l-~-~l~~L~~L~L~~n~l~--~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~  271 (735)
                      |+++-|.+....-..+ . --++|+.|++++++-.  ..--..+...|++|..|||++| .++.....+|..++.|++|.
T Consensus       265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS  344 (419)
T KOG2120|consen  265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS  344 (419)
T ss_pred             cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence            9999887654221111 1 1256788888876421  1112234467888999999886 44545556677888888888


Q ss_pred             ccccccCcccccc---ccCCCCCCEEEeeCC
Q 004704          272 FENNNFSGKIKDG---LLSSTSLQVLDISNN  299 (735)
Q Consensus       272 L~~n~l~~~~~~~---l~~~~~L~~L~l~~n  299 (735)
                      ++.|..  .+|..   +...|+|.+|++.++
T Consensus       345 lsRCY~--i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  345 LSRCYD--IIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             hhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence            888864  34443   356678888887764

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.56  E-value=3.6e-09  Score=100.67  Aligned_cols=179  Identities=25%  Similarity=0.248  Sum_probs=81.9

Q ss_pred             CCCEEeCCCCcCCCC-cchhhhCCCCCCEEeCCCCcccccCChhhhhcCCCCCeeecccccccccccCC-CCCCCCCeeE
Q 004704           21 RLKILDISSNQLNGS-LPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTE-NWLPTSQLIV   98 (735)
Q Consensus        21 ~L~~L~Ls~n~i~~~-~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~-~~~~~~~L~~   98 (735)
                      .|++||||+..|+-. +-.-+..|++|+.|.+.++++.+.+. ..+++-.+|+.|+++.++....-... .+..|+.|.+
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~-~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~  264 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIV-NTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE  264 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHH-HHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence            355555555555421 12233455555555555555554443 33555555555555554433222211 2244555555


Q ss_pred             EEeeCCCCCCCCchhh-hC-CCCCCEEEccCCc--CcccCchHHHhCCCCCcEEECcCCc-CcccCcCCcCCCCCcCEEE
Q 004704           99 LGLTKCNLNGSYPDFL-LH-QYHLKYLDLSHNK--LVGNFPTWLLRNNPKLEVLLLKNNS-FSGILQLPKAKHDFLHHLD  173 (735)
Q Consensus        99 L~L~~n~l~~~~~~~l-~~-l~~L~~L~Ls~n~--l~~~~p~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~L~~L~  173 (735)
                      |+|+.|.+.......+ .+ -++|+.|+|+++.  +...--+.+.+.+++|.+|||++|. ++......+.+++.|++|.
T Consensus       265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS  344 (419)
T KOG2120|consen  265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS  344 (419)
T ss_pred             cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence            5555555543322211 11 2345555555542  1111112233456666666666543 2222223344556666666


Q ss_pred             ccCCcCCCcCChhHH--HhcccCcEEECcCC
Q 004704          174 ISCNNFRGKLPHNMG--VILQKLMYMDISKN  202 (735)
Q Consensus       174 Ls~n~l~~~~~~~~~--~~l~~L~~L~L~~n  202 (735)
                      ++.|..  .+|..+.  +..|.|.+|++.++
T Consensus       345 lsRCY~--i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  345 LSRCYD--IIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             hhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence            666542  2333221  12456666666554

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.50  E-value=7.4e-09  Score=87.10  Aligned_cols=86  Identities=23%  Similarity=0.379  Sum_probs=44.1

Q ss_pred             ccceEECCCCcccCCCCccccccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccCCccccCCCCCCeEEcc
Q 004704          535 RVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVS  614 (735)
Q Consensus       535 ~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls  614 (735)
                      .++.++|++|+++ .+|.++..++.|+.||++.|.+. ..|..+..|.+|-.||.-.|.+. +||..+---+.....++.
T Consensus        78 t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lg  154 (177)
T KOG4579|consen   78 TATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLG  154 (177)
T ss_pred             hhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhc
Confidence            3444556666665 55555666666666666666665 45555555666666666665555 444332222222223334


Q ss_pred             cCcCcccCC
Q 004704          615 YNNLSGRTP  623 (735)
Q Consensus       615 ~N~l~~~~p  623 (735)
                      ++++.+..|
T Consensus       155 nepl~~~~~  163 (177)
T KOG4579|consen  155 NEPLGDETK  163 (177)
T ss_pred             CCcccccCc
Confidence            444444444

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.39  E-value=1.6e-07  Score=89.65  Aligned_cols=217  Identities=20%  Similarity=0.160  Sum_probs=118.0

Q ss_pred             cCCCCCCCEEeCCCCcCCCCcc-hhh-hCCCCCCEEeCCCCcccccCC-hhhhhcCCCCCeeecccccccccccCCCCCC
Q 004704           16 LKNLTRLKILDISSNQLNGSLP-SVI-SNLTSLEYLDLSHNNFEGMFP-LSSLANHSKLEGLLLSTRNNTLHVKTENWLP   92 (735)
Q Consensus        16 ~~~l~~L~~L~Ls~n~i~~~~p-~~~-~~l~~L~~L~Ls~n~l~~~~~-~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~   92 (735)
                      +.....++.|.+.++.|..+-. ..| ..++.++.+||.+|.|++--. .+.+.+++.|++|+++.|.+...+.... .+
T Consensus        41 v~s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp-~p  119 (418)
T KOG2982|consen   41 VSSLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP-LP  119 (418)
T ss_pred             eccccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc-cc
Confidence            3344455566666666653322 123 357788899999998874322 1346788888888888887766665543 56


Q ss_pred             CCCeeEEEeeCCCCC-CCCchhhhCCCCCCEEEccCCcCcccCchHHHhCCCCCcEEECcCCcCcccCcCCcCCCCCcCE
Q 004704           93 TSQLIVLGLTKCNLN-GSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHH  171 (735)
Q Consensus        93 ~~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~  171 (735)
                      ..+|++|-|.+..+. ...-..+..++.++.|++|.|++. .              +.+..+.+....       +.+++
T Consensus       120 ~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~r-q--------------~n~Dd~c~e~~s-------~~v~t  177 (418)
T KOG2982|consen  120 LKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLR-Q--------------LNLDDNCIEDWS-------TEVLT  177 (418)
T ss_pred             ccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhh-h--------------hccccccccccc-------hhhhh
Confidence            678888888877765 223344556777777777776442 1              112222111110       11222


Q ss_pred             EEccCCcCCC-cCChhHHHhcccCcEEECcCCcCCCCC-CcccCCCCCCCEEECCCccccCccchhhhhCCCCCCEEEcc
Q 004704          172 LDISCNNFRG-KLPHNMGVILQKLMYMDISKNCFEGNI-PYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLS  249 (735)
Q Consensus       172 L~Ls~n~l~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~  249 (735)
                      +.+-.|...- .--..+...+|++..+.+..|.+...- -.....++.+.-|.|+.|++..-..-....++++|..|.++
T Consensus       178 lh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~  257 (418)
T KOG2982|consen  178 LHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVS  257 (418)
T ss_pred             hhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeecc
Confidence            2222221100 000112233567777777777665321 22344556666677777776543333334566677777777


Q ss_pred             CCCCCC
Q 004704          250 NNNFEG  255 (735)
Q Consensus       250 ~n~l~~  255 (735)
                      ++.+.+
T Consensus       258 ~~Pl~d  263 (418)
T KOG2982|consen  258 ENPLSD  263 (418)
T ss_pred             CCcccc
Confidence            666553

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.38  E-value=1.2e-07  Score=89.39  Aligned_cols=217  Identities=22%  Similarity=0.258  Sum_probs=109.8

Q ss_pred             CCCCCCEEeCCCCcCCCCcchh----hhCCCCCCEEeCCCCcccccCChhhhhcCCCCCeeecccccccccccCCCCCCC
Q 004704           18 NLTRLKILDISSNQLNGSLPSV----ISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPT   93 (735)
Q Consensus        18 ~l~~L~~L~Ls~n~i~~~~p~~----~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~   93 (735)
                      .+..++.+|||+|.|...-..+    +++-.+|+..++|.- ++|..-.....++.               .-..++.+|
T Consensus        28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~---------------~Ll~aLlkc   91 (388)
T COG5238          28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLV---------------MLLKALLKC   91 (388)
T ss_pred             hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHH---------------HHHHHHhcC
Confidence            3566777777777776433333    344466666666542 22221100000000               000134555


Q ss_pred             CCeeEEEeeCCCCCCCCch----hhhCCCCCCEEEccCCcCcccCc-----hHHH--------hCCCCCcEEECcCCcCc
Q 004704           94 SQLIVLGLTKCNLNGSYPD----FLLHQYHLKYLDLSHNKLVGNFP-----TWLL--------RNNPKLEVLLLKNNSFS  156 (735)
Q Consensus        94 ~~L~~L~L~~n~l~~~~~~----~l~~l~~L~~L~Ls~n~l~~~~p-----~~~~--------~~l~~L~~L~L~~n~l~  156 (735)
                      +.|+.++|++|.+....|+    .+++.+.|++|.+++|.+- .+.     ..++        .+-|.|++.....|++.
T Consensus        92 p~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG-p~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle  170 (388)
T COG5238          92 PRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG-PIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE  170 (388)
T ss_pred             CcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCC-ccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc
Confidence            6666666666666544443    3456667777777777653 221     1111        13466777777777665


Q ss_pred             ccCc----CCcCCCCCcCEEEccCCcCCCcCChhHH-------HhcccCcEEECcCCcCCCC----CCcccCCCCCCCEE
Q 004704          157 GILQ----LPKAKHDFLHHLDISCNNFRGKLPHNMG-------VILQKLMYMDISKNCFEGN----IPYSAGEMKELSLL  221 (735)
Q Consensus       157 ~~~~----~~~~~~~~L~~L~Ls~n~l~~~~~~~~~-------~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L  221 (735)
                      .-..    ..+.....|+++.+..|.|.   |.++.       ..+++|+.||+.+|-++-.    +...+...+.|+.|
T Consensus       171 ngs~~~~a~~l~sh~~lk~vki~qNgIr---pegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL  247 (388)
T COG5238         171 NGSKELSAALLESHENLKEVKIQQNGIR---PEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLREL  247 (388)
T ss_pred             cCcHHHHHHHHHhhcCceeEEeeecCcC---cchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhc
Confidence            3211    12233356777777777765   33221       1256777777777766531    22334444556666


Q ss_pred             ECCCccccCccchhhhhC-----CCCCCEEEccCCCCC
Q 004704          222 DLSRNYFSGGLSQSVVTG-----CFSLELLDLSNNNFE  254 (735)
Q Consensus       222 ~L~~n~l~~~~~~~~~~~-----l~~L~~L~L~~n~l~  254 (735)
                      .+..|-++..-..+++..     .++|..|...+|.+.
T Consensus       248 ~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~  285 (388)
T COG5238         248 RLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERR  285 (388)
T ss_pred             cccchhhccccHHHHHHHhhhhcCCCccccccchhhhc
Confidence            666666654333333321     245555555555444

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.36  E-value=1.4e-08  Score=107.73  Aligned_cols=128  Identities=30%  Similarity=0.279  Sum_probs=91.7

Q ss_pred             CCCEEEccCCcCcccCchHHHhCCCCCcEEECcCCcCcccCcCCcCCCCCcCEEEccCCcCCCcCChhHHHhcccCcEEE
Q 004704          119 HLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMD  198 (735)
Q Consensus       119 ~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~  198 (735)
                      .|.+.+.+.|.+. .+.+.+ +-++.|+.|+|++|+++...  .+..++.|++|||++|.+. .+|.--...+ +|+.|.
T Consensus       165 ~L~~a~fsyN~L~-~mD~SL-qll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~  238 (1096)
T KOG1859|consen  165 KLATASFSYNRLV-LMDESL-QLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLN  238 (1096)
T ss_pred             hHhhhhcchhhHH-hHHHHH-HHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhh-hheeee
Confidence            4666777777775 444443 46788888889988888763  6677888888899888887 6665444434 488888


Q ss_pred             CcCCcCCCCCCcccCCCCCCCEEECCCccccCccchhhhhCCCCCCEEEccCCCCC
Q 004704          199 ISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFE  254 (735)
Q Consensus       199 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~  254 (735)
                      +++|.++.  -..+.++++|+.||++.|-+.+.-.-.....+..|+.|.|.+|.+-
T Consensus       239 lrnN~l~t--L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  239 LRNNALTT--LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             ecccHHHh--hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            88888763  2356788888888888887775333333445667888888888764

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.26  E-value=2.7e-07  Score=87.03  Aligned_cols=204  Identities=20%  Similarity=0.179  Sum_probs=115.9

Q ss_pred             CcCCCCCCCCc----cccccCCCCCCCEEeCCCCcCC---CCcc-------hhhhCCCCCCEEeCCCCcccccCCh---h
Q 004704            1 MNLERNFIGSP----LITCLKNLTRLKILDISSNQLN---GSLP-------SVISNLTSLEYLDLSHNNFEGMFPL---S   63 (735)
Q Consensus         1 L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~i~---~~~p-------~~~~~l~~L~~L~Ls~n~l~~~~~~---~   63 (735)
                      +|||+|.|..+    +...+.+-.+|+..++|.-...   ..++       .++.+|++|+..+||.|.|....|.   .
T Consensus        35 vdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~d  114 (388)
T COG5238          35 VDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEELGD  114 (388)
T ss_pred             EeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccchHHHH
Confidence            48999999865    4456667789999998864322   2233       3567899999999999999776663   3


Q ss_pred             hhhcCCCCCeeecccccccccccCC------------CCCCCCCeeEEEeeCCCCCCCCc----hhhhCCCCCCEEEccC
Q 004704           64 SLANHSKLEGLLLSTRNNTLHVKTE------------NWLPTSQLIVLGLTKCNLNGSYP----DFLLHQYHLKYLDLSH  127 (735)
Q Consensus        64 ~~~~l~~L~~L~L~~~~~~~~~~~~------------~~~~~~~L~~L~L~~n~l~~~~~----~~l~~l~~L~~L~Ls~  127 (735)
                      .+++.+.|.+|.+++|.........            .....+.|+++....|++..-..    ..+.....|+++.+..
T Consensus       115 ~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~q  194 (388)
T COG5238         115 LISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQ  194 (388)
T ss_pred             HHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeee
Confidence            4677788888888866543222111            11334566777766666652111    1122334566666666


Q ss_pred             CcCcccCc-----hHHHhCCCCCcEEECcCCcCcccC----cCCcCCCCCcCEEEccCCcCCCcCChhHHHh-----ccc
Q 004704          128 NKLVGNFP-----TWLLRNNPKLEVLLLKNNSFSGIL----QLPKAKHDFLHHLDISCNNFRGKLPHNMGVI-----LQK  193 (735)
Q Consensus       128 n~l~~~~p-----~~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~-----l~~  193 (735)
                      |.|.-.--     ..+ ..+.+|+.||+..|.++-..    ...+...+.|+.|.+.+|-++....+.++..     .++
T Consensus       195 NgIrpegv~~L~~~gl-~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~  273 (388)
T COG5238         195 NGIRPEGVTMLAFLGL-FYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPN  273 (388)
T ss_pred             cCcCcchhHHHHHHHH-HHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCC
Confidence            65542100     111 24566666666666655322    2223344456666666665554444443322     234


Q ss_pred             CcEEECcCCcCC
Q 004704          194 LMYMDISKNCFE  205 (735)
Q Consensus       194 L~~L~L~~n~l~  205 (735)
                      |+.|-..+|.+.
T Consensus       274 l~~L~~~Yne~~  285 (388)
T COG5238         274 LMPLPGDYNERR  285 (388)
T ss_pred             ccccccchhhhc
Confidence            444444444443

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.24  E-value=4.1e-07  Score=86.91  Aligned_cols=206  Identities=19%  Similarity=0.132  Sum_probs=102.3

Q ss_pred             CCCCCEEECCCccccCccch-hhhhCCCCCCEEEccCCCCCC--cCcccccCCCCCCEEEccccccCccccccc-cCCCC
Q 004704          215 MKELSLLDLSRNYFSGGLSQ-SVVTGCFSLELLDLSNNNFEG--QFFSEYMNLTRLRHLYFENNNFSGKIKDGL-LSSTS  290 (735)
Q Consensus       215 l~~L~~L~L~~n~l~~~~~~-~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l-~~~~~  290 (735)
                      ...++.+.+.++.|...-.. .+...++.++.+||..|.++.  .+...+.++|.|+.|+++.|.+...+. .+ ....+
T Consensus        44 ~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~-~lp~p~~n  122 (418)
T KOG2982|consen   44 LRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIK-SLPLPLKN  122 (418)
T ss_pred             ccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccc-cCcccccc
Confidence            33455555656555432222 233456778888888888774  333445778888888888888774332 22 35568


Q ss_pred             CCEEEeeCCccCCC-CCchhhhhcccCcEEEcCCCcCCC--CCCccCCCC-CCCCEEEcccCCCCc--cCCCcc-CCCCc
Q 004704          291 LQVLDISNNMLSGH-IPHWMGNFSSELEILSMSKNHLEG--NVPVQLNNL-ERLRILDISENRLSG--PIASSL-NLSSV  363 (735)
Q Consensus       291 L~~L~l~~n~l~~~-~p~~~~~~~~~L~~L~l~~n~l~~--~~~~~l~~l-~~L~~L~L~~n~l~~--~~~~~~-~l~~L  363 (735)
                      |+.|.+.+..+.-. ....+..+|. +++|+++.|....  ....+.... +.+.++.+..|....  ...... -++++
T Consensus       123 l~~lVLNgT~L~w~~~~s~l~~lP~-vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv  201 (418)
T KOG2982|consen  123 LRVLVLNGTGLSWTQSTSSLDDLPK-VTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNV  201 (418)
T ss_pred             eEEEEEcCCCCChhhhhhhhhcchh-hhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccc
Confidence            88888888776522 2223344554 7777777774321  111111111 133444443332110  000000 24455


Q ss_pred             cEEEccCCcccccC-cccccCCCCCcEEeCCCCccccc-CChhhhCCCCccEEEccCCcCC
Q 004704          364 EHLSLQKNALNGLI-PGELFRSCKLVTLNLRDNTFSGR-IPHQINEHSNLRFLLLGGNHLQ  422 (735)
Q Consensus       364 ~~L~l~~n~l~~~~-~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~  422 (735)
                      ..+.+..|.+...- ...+...+.+..|+|+.|+|..- .-+.+.+++.|..|.+++|++.
T Consensus       202 ~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~  262 (418)
T KOG2982|consen  202 NSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLS  262 (418)
T ss_pred             hheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence            55555555444321 12223334444555555555321 1123444555555555555554

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.24  E-value=3.2e-08  Score=105.13  Aligned_cols=178  Identities=26%  Similarity=0.313  Sum_probs=115.7

Q ss_pred             ChhHHHhcccCcEEECcCCcCCCCCCcccCCC-CCCCEEECCCccccCccchhhhhCC----------CCCCEEEccCCC
Q 004704          184 PHNMGVILQKLMYMDISKNCFEGNIPYSAGEM-KELSLLDLSRNYFSGGLSQSVVTGC----------FSLELLDLSNNN  252 (735)
Q Consensus       184 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l-~~L~~L~L~~n~l~~~~~~~~~~~l----------~~L~~L~L~~n~  252 (735)
                      |-.++. +.+|+.|.+.+|.+..  ...+..+ ..|+.|-.. |.++ .+ ..++..|          ..|.+.+.++|.
T Consensus       102 pi~ifp-F~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC~-~Sl~-Al-~~v~ascggd~~ns~~Wn~L~~a~fsyN~  175 (1096)
T KOG1859|consen  102 PISIFP-FRSLRVLELRGCDLST--AKGLQELRHQLEKLICH-NSLD-AL-RHVFASCGGDISNSPVWNKLATASFSYNR  175 (1096)
T ss_pred             Cceecc-ccceeeEEecCcchhh--hhhhHHHHHhhhhhhhh-ccHH-HH-HHHHHHhccccccchhhhhHhhhhcchhh
Confidence            556665 6788888888887652  1111111 123333221 2111 00 1111111          257778888888


Q ss_pred             CCCcCcccccCCCCCCEEEccccccCccccccccCCCCCCEEEeeCCccCCCCCchhhhhcccCcEEEcCCCcCCCCCCc
Q 004704          253 FEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPV  332 (735)
Q Consensus       253 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~  332 (735)
                      +. .+..++.-++.++.|+|++|+++..  +.+..++.|++|||++|.+. .+|. ++.-..+|..|.+++|.++..  .
T Consensus       176 L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~-l~~~gc~L~~L~lrnN~l~tL--~  248 (1096)
T KOG1859|consen  176 LV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQ-LSMVGCKLQLLNLRNNALTTL--R  248 (1096)
T ss_pred             HH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccc-cchhhhhheeeeecccHHHhh--h
Confidence            87 4556677788899999999998733  36788899999999999988 6665 232222389999999988743  3


Q ss_pred             cCCCCCCCCEEEcccCCCCccCCC--ccCCCCccEEEccCCccc
Q 004704          333 QLNNLERLRILDISENRLSGPIAS--SLNLSSVEHLSLQKNALN  374 (735)
Q Consensus       333 ~l~~l~~L~~L~L~~n~l~~~~~~--~~~l~~L~~L~l~~n~l~  374 (735)
                      .+.++++|+.||+++|-+.+.-.-  .+.+..|++|+|.+|.+-
T Consensus       249 gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  249 GIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             hHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            467888899999999987753322  236778888899888775

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.07  E-value=3.3e-07  Score=77.37  Aligned_cols=84  Identities=20%  Similarity=0.346  Sum_probs=48.9

Q ss_pred             CCcCEEEccCCcCCCcCChhHHHhcccCcEEECcCCcCCCCCCcccCCCCCCCEEECCCccccCccchhhhhCCCCCCEE
Q 004704          167 DFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELL  246 (735)
Q Consensus       167 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L  246 (735)
                      ..|+.++|++|.+. .+|+.+...++.++.+++++|.++ .+|..+..++.|+.|+++.|.+. ..|.-++. +.++..|
T Consensus        53 ~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~-L~~l~~L  128 (177)
T KOG4579|consen   53 YELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAP-LIKLDML  128 (177)
T ss_pred             ceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHH-HHhHHHh
Confidence            34555666666665 556665555556666666666665 45666666666666666666665 44444433 5555555


Q ss_pred             EccCCCCC
Q 004704          247 DLSNNNFE  254 (735)
Q Consensus       247 ~L~~n~l~  254 (735)
                      +..+|.+.
T Consensus       129 ds~~na~~  136 (177)
T KOG4579|consen  129 DSPENARA  136 (177)
T ss_pred             cCCCCccc
Confidence            55555544

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.99  E-value=6.9e-06  Score=56.24  Aligned_cols=38  Identities=45%  Similarity=0.660  Sum_probs=32.1

Q ss_pred             CCCCEEeCCCCcCCCCcchhhhCCCCCCEEeCCCCcccc
Q 004704           20 TRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEG   58 (735)
Q Consensus        20 ~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~   58 (735)
                      ++|++|++++|+|+ .+|..+++|++|++|++++|+|++
T Consensus         1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~   38 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD   38 (44)
T ss_dssp             TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred             CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence            57999999999999 677789999999999999999874

...

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.96  E-value=2.8e-05  Score=80.38  Aligned_cols=54  Identities=15%  Similarity=0.196  Sum_probs=28.0

Q ss_pred             CCCccEEEccCCcccccCcccccCCCCCcEEeCCCCcccccCChhhhCCCCccEEEccCC
Q 004704          360 LSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGN  419 (735)
Q Consensus       360 l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n  419 (735)
                      +..++.|++++|.++.. |.   -..+|+.|.+++|.--..+|..+.  ++|+.|++++|
T Consensus        51 ~~~l~~L~Is~c~L~sL-P~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~C  104 (426)
T PRK15386         51 ARASGRLYIKDCDIESL-PV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHC  104 (426)
T ss_pred             hcCCCEEEeCCCCCccc-CC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCc
Confidence            45566666666655532 31   122466666665433234454332  35666666665

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.96  E-value=4.9e-06  Score=56.99  Aligned_cols=36  Identities=36%  Similarity=0.641  Sum_probs=19.6

Q ss_pred             cCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCccc
Q 004704          559 AILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLT  595 (735)
Q Consensus       559 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~  595 (735)
                      +|++|++++|+|+ .+|..+++|++|+.|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            4556666666666 34444566666666666666555

...

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.93  E-value=9.9e-07  Score=88.44  Aligned_cols=282  Identities=15%  Similarity=0.053  Sum_probs=164.3

Q ss_pred             ccCCCCCCCEEeCCCCc-CCCCcchhh-hCCCCCCEEeCCCC-cccccCChhhhhcCCCCCeeecccccccccccCCCC-
Q 004704           15 CLKNLTRLKILDISSNQ-LNGSLPSVI-SNLTSLEYLDLSHN-NFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENW-   90 (735)
Q Consensus        15 ~~~~l~~L~~L~Ls~n~-i~~~~p~~~-~~l~~L~~L~Ls~n-~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~-   90 (735)
                      .-.+++++++|++.++. ++...-..+ ..|++|++|++..+ .+++..-......+++|++|+++++..+..-...++ 
T Consensus       159 ~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~  238 (483)
T KOG4341|consen  159 FASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQ  238 (483)
T ss_pred             HhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHh
Confidence            44578888888888874 443322333 45888999988874 454332222345788999999998876555333223 


Q ss_pred             CCCCCeeEEEeeCCCCCCC--CchhhhCCCCCCEEEccCCc-CcccCchHHHhCCCCCcEEECcCCcCc-ccCcCC-cCC
Q 004704           91 LPTSQLIVLGLTKCNLNGS--YPDFLLHQYHLKYLDLSHNK-LVGNFPTWLLRNNPKLEVLLLKNNSFS-GILQLP-KAK  165 (735)
Q Consensus        91 ~~~~~L~~L~L~~n~l~~~--~~~~l~~l~~L~~L~Ls~n~-l~~~~p~~~~~~l~~L~~L~L~~n~l~-~~~~~~-~~~  165 (735)
                      .++..++.+.+.+|.=.+.  +-..-+.+..+..+++..+. +++.--..+...+..|+.|+.+++... ...-.. -.+
T Consensus       239 rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~  318 (483)
T KOG4341|consen  239 RGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQH  318 (483)
T ss_pred             ccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcC
Confidence            4566677777776542211  11111234456666655553 332211223345677888888876542 211112 235


Q ss_pred             CCCcCEEEccCCc-CCCcCChhHHHhcccCcEEECcCCcCCC--CCCcccCCCCCCCEEECCCccccCccc----hhhhh
Q 004704          166 HDFLHHLDISCNN-FRGKLPHNMGVILQKLMYMDISKNCFEG--NIPYSAGEMKELSLLDLSRNYFSGGLS----QSVVT  238 (735)
Q Consensus       166 ~~~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~L~~n~l~~~~~----~~~~~  238 (735)
                      +.+|+.+.++.++ ++..-...++..++.|+.+++.++....  .+...-.+++.|+.+.++++.....-.    .....
T Consensus       319 ~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c  398 (483)
T KOG4341|consen  319 CHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSC  398 (483)
T ss_pred             CCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccc
Confidence            6788888888876 4434444555667788888888875431  122233567888999888876542210    11123


Q ss_pred             CCCCCCEEEccCCCCC-CcCcccccCCCCCCEEEccccccCcc--ccccccCCCCCCEEEe
Q 004704          239 GCFSLELLDLSNNNFE-GQFFSEYMNLTRLRHLYFENNNFSGK--IKDGLLSSTSLQVLDI  296 (735)
Q Consensus       239 ~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~~~~L~~L~l  296 (735)
                      ++..|+.+.++++... +..-..+..+++|+.+++..+.-...  +...-.++|+++...+
T Consensus       399 ~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~  459 (483)
T KOG4341|consen  399 SLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHAY  459 (483)
T ss_pred             cccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceehhh
Confidence            4567888888888654 33334567788899888888753211  2222245666665543

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.71  E-value=1.6e-06  Score=87.10  Aligned_cols=34  Identities=18%  Similarity=0.260  Sum_probs=19.7

Q ss_pred             CcEEEcCCCcCC-CCCCccCCCCCCCCEEEcccCC
Q 004704          316 LEILSMSKNHLE-GNVPVQLNNLERLRILDISENR  349 (735)
Q Consensus       316 L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~L~~n~  349 (735)
                      ++.+.++++... ...-+.+..+++|+.+++-.++
T Consensus       403 l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q  437 (483)
T KOG4341|consen  403 LEVLELDNCPLITDATLEHLSICRNLERIELIDCQ  437 (483)
T ss_pred             cceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence            666666666543 2233345566677777776664

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.65  E-value=8.1e-05  Score=65.76  Aligned_cols=124  Identities=15%  Similarity=0.197  Sum_probs=42.9

Q ss_pred             hHHHhCCCCCcEEECcCCcCcccCcCCcCCCCCcCEEEccCCcCCCcCChhHHHhcccCcEEECcCCcCCCCCCcccCCC
Q 004704          136 TWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEM  215 (735)
Q Consensus       136 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l  215 (735)
                      +..|.++++|+.+.+.. .+..+....|..+++|+.+.+..+ +. .++...+..+++++.+.+.+ .+.......+..+
T Consensus         5 ~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~   80 (129)
T PF13306_consen    5 NNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNC   80 (129)
T ss_dssp             TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-
T ss_pred             HHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeecccccccccccc-ccccccccccccc
Confidence            33344444555555442 344444444555555555555443 33 44444444444555555543 2221222334445


Q ss_pred             CCCCEEECCCccccCccchhhhhCCCCCCEEEccCCCCCCcCcccccCCCCC
Q 004704          216 KELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRL  267 (735)
Q Consensus       216 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  267 (735)
                      ++|+.+++..+ +. .++...+.++ .|+.+.+.. .+.......|.++++|
T Consensus        81 ~~l~~i~~~~~-~~-~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen   81 TNLKNIDIPSN-IT-EIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL  128 (129)
T ss_dssp             TTECEEEETTT--B-EEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred             ccccccccCcc-cc-EEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence            55555555443 22 3444444444 555555543 2222333444444443

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.60  E-value=0.00012  Score=66.78  Aligned_cols=124  Identities=21%  Similarity=0.206  Sum_probs=72.8

Q ss_pred             EEEccCCcCCCcCChhHHHhcccCcEEECcCCcCCCCCCcccCCCCCCCEEECCCccccCccchhhhhCCCCCCEEEccC
Q 004704          171 HLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSN  250 (735)
Q Consensus       171 ~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~  250 (735)
                      .+++.+.++.  ....++....+...+||++|.+..  -..|..++.|.+|.+.+|+|+ .+.+.+...+++|..|.|.+
T Consensus        23 e~~LR~lkip--~ienlg~~~d~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~Ltn   97 (233)
T KOG1644|consen   23 ELDLRGLKIP--VIENLGATLDQFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILTN   97 (233)
T ss_pred             cccccccccc--chhhccccccccceecccccchhh--cccCCCccccceEEecCCcce-eeccchhhhccccceEEecC
Confidence            4455554432  112233334466677777777652  234667777888888888877 56666656667778888877


Q ss_pred             CCCCCcC-cccccCCCCCCEEEccccccCcccc---ccccCCCCCCEEEeeCC
Q 004704          251 NNFEGQF-FSEYMNLTRLRHLYFENNNFSGKIK---DGLLSSTSLQVLDISNN  299 (735)
Q Consensus       251 n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~---~~l~~~~~L~~L~l~~n  299 (735)
                      |++.... -..+..||+|++|.+-+|.+...--   -.+..+|+|+.||..+-
T Consensus        98 Nsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen   98 NSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             cchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence            7776321 1334566777777777776652211   12345666666666543

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.60  E-value=0.00012  Score=64.69  Aligned_cols=13  Identities=31%  Similarity=0.460  Sum_probs=4.2

Q ss_pred             hhhcCCCCCeeec
Q 004704           64 SLANHSKLEGLLL   76 (735)
Q Consensus        64 ~~~~l~~L~~L~L   76 (735)
                      +|.++++|+.+.+
T Consensus         7 ~F~~~~~l~~i~~   19 (129)
T PF13306_consen    7 AFYNCSNLESITF   19 (129)
T ss_dssp             TTTT-TT--EEEE
T ss_pred             HHhCCCCCCEEEE
Confidence            3444444444444

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.58  E-value=0.0003  Score=72.93  Aligned_cols=55  Identities=15%  Similarity=0.142  Sum_probs=29.0

Q ss_pred             CCCCCCEEEccCCCCCCcCcccccCCCCCCEEEccccccCccccccccCCCCCCEEEeeCC
Q 004704          239 GCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNN  299 (735)
Q Consensus       239 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n  299 (735)
                      .+.+++.|++++|.++. +|.   -.++|++|.++++.--..+|+.+  .++|++|++++|
T Consensus        50 ~~~~l~~L~Is~c~L~s-LP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C  104 (426)
T PRK15386         50 EARASGRLYIKDCDIES-LPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC  104 (426)
T ss_pred             HhcCCCEEEeCCCCCcc-cCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence            35667777777776653 231   12356666666543322444433  235666666655

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.53  E-value=3.7e-05  Score=86.57  Aligned_cols=186  Identities=18%  Similarity=0.185  Sum_probs=99.6

Q ss_pred             CCCCCCCEEeCCCCcCCCCcchhhhCCCCCCEEeCCCCccccc-------CChhhh-------hcCCCCCeeeccccccc
Q 004704           17 KNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGM-------FPLSSL-------ANHSKLEGLLLSTRNNT   82 (735)
Q Consensus        17 ~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~-------~~~~~~-------~~l~~L~~L~L~~~~~~   82 (735)
                      .+.-++...++.+.......-..+.... |+.|.|++-.....       +....+       ..-.+|++|++++....
T Consensus        57 ~~~f~ltki~l~~~~~~~~~~~~l~~~~-L~sl~LGnl~~~k~~~~~~~~idi~~lL~~~Ln~~sr~nL~~LdI~G~~~~  135 (699)
T KOG3665|consen   57 IRKFNLTKIDLKNVTLQHQTLEMLRKQD-LESLKLGNLDKIKQDYLDDATIDIISLLKDLLNEESRQNLQHLDISGSELF  135 (699)
T ss_pred             hhhheeEEeeccceecchhHHHHHhhcc-ccccCCcchHhhhhhhhhhhhccHHHHHHHHHhHHHHHhhhhcCccccchh
Confidence            3444556666666555533333343333 66666654321100       110000       12346777777665543


Q ss_pred             ccccCCCC-CCCCCeeEEEeeCCCCCCC-CchhhhCCCCCCEEEccCCcCcccCchHHHhCCCCCcEEECcCCcCccc-C
Q 004704           83 LHVKTENW-LPTSQLIVLGLTKCNLNGS-YPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGI-L  159 (735)
Q Consensus        83 ~~~~~~~~-~~~~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~-~  159 (735)
                      ........ ..+|.|+.|.+.+-.+... .-....++++|..||+|+.+++ .+ ..+ +++++|++|.+.+=.+... .
T Consensus       136 s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl-~GI-S~LknLq~L~mrnLe~e~~~~  212 (699)
T KOG3665|consen  136 SNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL-SGI-SRLKNLQVLSMRNLEFESYQD  212 (699)
T ss_pred             hccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc-HHH-hccccHHHHhccCCCCCchhh
Confidence            33322222 3567777777777655422 2233456777777777777776 33 233 4677777777776655531 1


Q ss_pred             cCCcCCCCCcCEEEccCCcCCCcCChh------HHHhcccCcEEECcCCcCCCC
Q 004704          160 QLPKAKHDFLHHLDISCNNFRGKLPHN------MGVILQKLMYMDISKNCFEGN  207 (735)
Q Consensus       160 ~~~~~~~~~L~~L~Ls~n~l~~~~~~~------~~~~l~~L~~L~L~~n~l~~~  207 (735)
                      -..+..+++|++||+|..... ..+.-      .+..+|+|+.||.+++.+.+.
T Consensus       213 l~~LF~L~~L~vLDIS~~~~~-~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~  265 (699)
T KOG3665|consen  213 LIDLFNLKKLRVLDISRDKNN-DDTKIIEQYLECGMVLPELRFLDCSGTDINEE  265 (699)
T ss_pred             HHHHhcccCCCeeeccccccc-cchHHHHHHHHhcccCccccEEecCCcchhHH
Confidence            123456777788888776543 22221      123367888888887766543

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.40  E-value=0.00019  Score=65.35  Aligned_cols=109  Identities=18%  Similarity=0.178  Sum_probs=85.1

Q ss_pred             CCCCCEEeCCCCcCCCCcchhhhCCCCCCEEeCCCCcccccCChhhhhcCCCCCeeecccccccccccCCCCCCCCCeeE
Q 004704           19 LTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIV   98 (735)
Q Consensus        19 l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~   98 (735)
                      +.+...+||++|.+...  ..|..++.|.+|.|++|+|+..-| ..-.-+++|+.|.|.+|++..-..-.....|++|++
T Consensus        41 ~d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p-~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~  117 (233)
T KOG1644|consen   41 LDQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDP-DLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEY  117 (233)
T ss_pred             ccccceecccccchhhc--ccCCCccccceEEecCCcceeecc-chhhhccccceEEecCcchhhhhhcchhccCCccce
Confidence            45778899999988732  357788999999999999985555 444566789999999988876666667788999999


Q ss_pred             EEeeCCCCCCCC---chhhhCCCCCCEEEccCCcC
Q 004704           99 LGLTKCNLNGSY---PDFLLHQYHLKYLDLSHNKL  130 (735)
Q Consensus        99 L~L~~n~l~~~~---~~~l~~l~~L~~L~Ls~n~l  130 (735)
                      |.+-+|.++..-   --.+..+++|++||.+.-.-
T Consensus       118 Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~  152 (233)
T KOG1644|consen  118 LTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTR  152 (233)
T ss_pred             eeecCCchhcccCceeEEEEecCcceEeehhhhhH
Confidence            999999887332   23467899999999987644

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.29  E-value=0.00017  Score=81.29  Aligned_cols=152  Identities=22%  Similarity=0.260  Sum_probs=99.2

Q ss_pred             CCCCEEEccCCcC-cccCchHHHhCCCCCcEEECcCCcCcccC-cCCcCCCCCcCEEEccCCcCCCcCChhHHHhcccCc
Q 004704          118 YHLKYLDLSHNKL-VGNFPTWLLRNNPKLEVLLLKNNSFSGIL-QLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLM  195 (735)
Q Consensus       118 ~~L~~L~Ls~n~l-~~~~p~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~  195 (735)
                      .+|++||+++... ....|..++..+|+|+.|.+.+-.+.... .....++++|..||+|+.+++ .+ .++.. +++|+
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl-~GIS~-LknLq  198 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL-SGISR-LKNLQ  198 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc-HHHhc-cccHH
Confidence            5688888888653 33556667777888888888887665331 223457788889999988887 33 45544 78888


Q ss_pred             EEECcCCcCCC-CCCcccCCCCCCCEEECCCccccCcc--ch---hhhhCCCCCCEEEccCCCCCCcCcccc-cCCCCCC
Q 004704          196 YMDISKNCFEG-NIPYSAGEMKELSLLDLSRNYFSGGL--SQ---SVVTGCFSLELLDLSNNNFEGQFFSEY-MNLTRLR  268 (735)
Q Consensus       196 ~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~--~~---~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~  268 (735)
                      .|.+.+=.+.. ..-..+.++++|+.||+|..+....-  ..   +....++.|+.||.|++.+.+..-+.+ ..-++|+
T Consensus       199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~  278 (699)
T KOG3665|consen  199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQ  278 (699)
T ss_pred             HHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHh
Confidence            88887765542 22235678899999999887654211  11   112347899999999888875443333 2344555


Q ss_pred             EEEc
Q 004704          269 HLYF  272 (735)
Q Consensus       269 ~L~L  272 (735)
                      .+.+
T Consensus       279 ~i~~  282 (699)
T KOG3665|consen  279 QIAA  282 (699)
T ss_pred             hhhh
Confidence            4443

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.54  E-value=0.0016  Score=62.31  Aligned_cols=114  Identities=21%  Similarity=0.190  Sum_probs=64.2

Q ss_pred             cchhhhCCCCCCEEeCCCCcccccCChhhhhcCCCCCeeecccccccccccCCCC-CCCCCeeEEEeeCCCCCCC-Cchh
Q 004704           36 LPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENW-LPTSQLIVLGLTKCNLNGS-YPDF  113 (735)
Q Consensus        36 ~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~-~~~~~L~~L~L~~n~l~~~-~~~~  113 (735)
                      +......+..|+.|++.+..++.   ...+-.+++|+.|.++.|.......-... ..+++|+++++++|++... --.-
T Consensus        35 ~~gl~d~~~~le~ls~~n~gltt---~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~p  111 (260)
T KOG2739|consen   35 LGGLTDEFVELELLSVINVGLTT---LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRP  111 (260)
T ss_pred             cccccccccchhhhhhhccceee---cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccch
Confidence            33334444555555555444331   12355566666666666643333322222 3457888888888887621 1122


Q ss_pred             hhCCCCCCEEEccCCcCcc--cCchHHHhCCCCCcEEECcC
Q 004704          114 LLHQYHLKYLDLSHNKLVG--NFPTWLLRNNPKLEVLLLKN  152 (735)
Q Consensus       114 l~~l~~L~~L~Ls~n~l~~--~~p~~~~~~l~~L~~L~L~~  152 (735)
                      +..+.+|..||+.+|..+.  .--..+|.-+++|++|+-..
T Consensus       112 l~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~d  152 (260)
T KOG2739|consen  112 LKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCD  152 (260)
T ss_pred             hhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccccc
Confidence            4567778889999887653  11234566778888776543

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.46  E-value=0.00015  Score=69.16  Aligned_cols=64  Identities=25%  Similarity=0.306  Sum_probs=36.1

Q ss_pred             cCCCCCCCEEeCCCCcCCCCcchhhhCCCCCCEEeCCCCcccccCChhhhhcCCCCCeeecccccc
Q 004704           16 LKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNN   81 (735)
Q Consensus        16 ~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~~~~   81 (735)
                      ..+++.|++|.||-|.|+..  ..|..|++|+.|.|..|.|.+.-...-+.++++|+.|+|..|.-
T Consensus        37 c~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPC  100 (388)
T KOG2123|consen   37 CEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPC  100 (388)
T ss_pred             HHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCc
Confidence            34566666666666666633  23566666666666666665433333455566666666555443

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.36  E-value=0.0012  Score=73.13  Aligned_cols=111  Identities=26%  Similarity=0.219  Sum_probs=46.2

Q ss_pred             CCCCCEEeCCCC-cCCCC-cchhhhCCCCCCEEeCCCC-cccccCC---hhhhhcCCCCCeeecccccccccccCCCC-C
Q 004704           19 LTRLKILDISSN-QLNGS-LPSVISNLTSLEYLDLSHN-NFEGMFP---LSSLANHSKLEGLLLSTRNNTLHVKTENW-L   91 (735)
Q Consensus        19 l~~L~~L~Ls~n-~i~~~-~p~~~~~l~~L~~L~Ls~n-~l~~~~~---~~~~~~l~~L~~L~L~~~~~~~~~~~~~~-~   91 (735)
                      ++.|+.|.+..+ .+... .-.....+++|+.|+++++ ......+   ......+++|+.|+++.+.......-..+ .
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~  266 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS  266 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence            555666666555 22211 2233445566666666542 1111111   11233445555555555443222111111 1


Q ss_pred             CCCCeeEEEeeCCC-CCCCCch-hhhCCCCCCEEEccCCc
Q 004704           92 PTSQLIVLGLTKCN-LNGSYPD-FLLHQYHLKYLDLSHNK  129 (735)
Q Consensus        92 ~~~~L~~L~L~~n~-l~~~~~~-~l~~l~~L~~L~Ls~n~  129 (735)
                      .|++|++|.+.+|. ++...-. ....+++|++|+++++.
T Consensus       267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~  306 (482)
T KOG1947|consen  267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH  306 (482)
T ss_pred             hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence            24455555555444 3322222 22234455555555443

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.31  E-value=0.00084  Score=74.39  Aligned_cols=79  Identities=23%  Similarity=0.213  Sum_probs=37.0

Q ss_pred             cCCCCCCCEEECCCccccCccc-hhhhhCCCCCCEEEccCCCCCCcCcccccCCCCCCEEEccccccCcc-ccccccC-C
Q 004704          212 AGEMKELSLLDLSRNYFSGGLS-QSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGK-IKDGLLS-S  288 (735)
Q Consensus       212 l~~l~~L~~L~L~~n~l~~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~l~~-~  288 (735)
                      ...+++++.+.+..+... ... .....+|+.|. ..+...         .....+++.|+++.+..... .-..... +
T Consensus       358 ~~~~~~l~~~~l~~~~~~-~~~~~~~l~gc~~l~-~~l~~~---------~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~  426 (482)
T KOG1947|consen  358 LRSCPKLTDLSLSYCGIS-DLGLELSLRGCPNLT-ESLELR---------LCRSDSLRVLNLSDCRLVTDKGLRCLADSC  426 (482)
T ss_pred             HhcCCCcchhhhhhhhcc-CcchHHHhcCCcccc-hHHHHH---------hccCCccceEecccCccccccchHHHhhhh
Confidence            345666666666666533 222 34445555552 211111         11122267777777754311 1111111 5


Q ss_pred             CCCCEEEeeCCcc
Q 004704          289 TSLQVLDISNNML  301 (735)
Q Consensus       289 ~~L~~L~l~~n~l  301 (735)
                      ..++.+++.++..
T Consensus       427 ~~~~~l~~~~~~~  439 (482)
T KOG1947|consen  427 SNLKDLDLSGCRV  439 (482)
T ss_pred             hccccCCccCccc
Confidence            5667777766654

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.28  E-value=0.0031  Score=60.31  Aligned_cols=82  Identities=22%  Similarity=0.194  Sum_probs=40.5

Q ss_pred             CCCCccEEEccCC--cccccCcccccCCCCCcEEeCCCCccccc-CChhhhCCCCccEEEccCCcCCCCC---chhhhcC
Q 004704          359 NLSSVEHLSLQKN--ALNGLIPGELFRSCKLVTLNLRDNTFSGR-IPHQINEHSNLRFLLLGGNHLQGPI---PDQLCQL  432 (735)
Q Consensus       359 ~l~~L~~L~l~~n--~l~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~---~~~~~~l  432 (735)
                      .+++|+.|.++.|  ++.+.++.....+++|+++++++|+|... --..+..+.+|..|++.+|..+..-   ...|.-+
T Consensus        63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll  142 (260)
T KOG2739|consen   63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLL  142 (260)
T ss_pred             CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHHh
Confidence            4455555555555  44443444444456666666666665520 0112334555666666666555321   1234455


Q ss_pred             CCCCEEEC
Q 004704          433 QKLAMMDL  440 (735)
Q Consensus       433 ~~L~~L~L  440 (735)
                      ++|++||-
T Consensus       143 ~~L~~LD~  150 (260)
T KOG2739|consen  143 PSLKYLDG  150 (260)
T ss_pred             hhhccccc
Confidence            66665553

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.95  E-value=0.0026  Score=36.08  Aligned_cols=19  Identities=47%  Similarity=0.723  Sum_probs=9.1

Q ss_pred             CCEEeCCCCcccccCCcccc
Q 004704          584 IESLDISYNKLTGQIPPQLT  603 (735)
Q Consensus       584 L~~LdLs~N~l~~~~p~~l~  603 (735)
                      |++|||++|+++ .+|..|+
T Consensus         2 L~~Ldls~n~l~-~ip~~~~   20 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSFS   20 (22)
T ss_dssp             ESEEEETSSEES-EEGTTTT
T ss_pred             ccEEECCCCcCE-eCChhhc
Confidence            445555555555 4444443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.54  E-value=0.00073  Score=64.64  Aligned_cols=101  Identities=28%  Similarity=0.286  Sum_probs=59.2

Q ss_pred             CCCCCEEeCCCCcCCCCcchhhhCCCCCCEEeCCCCcccccCChhhhhcCCCCCeeecccccccccccCCCCCCCCCeeE
Q 004704           19 LTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIV   98 (735)
Q Consensus        19 l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~   98 (735)
                      +.+.+.|+.-++.++.+  ....+++.|++|.||-|+|+..-|   +..|+                         +|++
T Consensus        18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~p---l~rCt-------------------------rLkE   67 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAP---LQRCT-------------------------RLKE   67 (388)
T ss_pred             HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchh---HHHHH-------------------------HHHH
Confidence            44555666666666532  234556667777777666653322   44444                         5555


Q ss_pred             EEeeCCCCCCC-CchhhhCCCCCCEEEccCCcCcccCch----HHHhCCCCCcEEE
Q 004704           99 LGLTKCNLNGS-YPDFLLHQYHLKYLDLSHNKLVGNFPT----WLLRNNPKLEVLL  149 (735)
Q Consensus        99 L~L~~n~l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~p~----~~~~~l~~L~~L~  149 (735)
                      |+|..|.|.+. .-..+.++++|+.|.|..|.-.|..+.    .+.+-+|+|++||
T Consensus        68 lYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   68 LYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             HHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            55555555432 123466788888888888876655443    3455678888765

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.35  E-value=0.0061  Score=34.56  Aligned_cols=20  Identities=60%  Similarity=0.833  Sum_probs=10.6

Q ss_pred             CCeEeCCCCcCcccCcccccC
Q 004704          560 ILALNLSNNSLSGSIPESFSN  580 (735)
Q Consensus       560 L~~L~Ls~N~l~~~~p~~~~~  580 (735)
                      |++|||++|+++ .+|..|++
T Consensus         2 L~~Ldls~n~l~-~ip~~~~~   21 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSFSN   21 (22)
T ss_dssp             ESEEEETSSEES-EEGTTTTT
T ss_pred             ccEEECCCCcCE-eCChhhcC
Confidence            455555555555 44444443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=92.91  E-value=0.00086  Score=72.38  Aligned_cols=85  Identities=28%  Similarity=0.221  Sum_probs=45.0

Q ss_pred             CCEEeCCCCcccccCC---hhhhhcCCCCCeeecccccccccccCC---CCCC-CCCeeEEEeeCCCCCCC----Cchhh
Q 004704           46 LEYLDLSHNNFEGMFP---LSSLANHSKLEGLLLSTRNNTLHVKTE---NWLP-TSQLIVLGLTKCNLNGS----YPDFL  114 (735)
Q Consensus        46 L~~L~Ls~n~l~~~~~---~~~~~~l~~L~~L~L~~~~~~~~~~~~---~~~~-~~~L~~L~L~~n~l~~~----~~~~l  114 (735)
                      +.+|+|.+|.+.....   ...+.....|..|++++|++.......   .+.. -..++.|++..|.+++.    +.+.+
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L  168 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL  168 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence            5566666666543211   123445556666666666554221111   1111 13556666666666633    44555


Q ss_pred             hCCCCCCEEEccCCcC
Q 004704          115 LHQYHLKYLDLSHNKL  130 (735)
Q Consensus       115 ~~l~~L~~L~Ls~n~l  130 (735)
                      ....+++.+|++.|.+
T Consensus       169 ~~~~~l~~l~l~~n~l  184 (478)
T KOG4308|consen  169 EKNEHLTELDLSLNGL  184 (478)
T ss_pred             hcccchhHHHHHhccc
Confidence            5677777777777766

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=92.88  E-value=0.052  Score=28.45  Aligned_cols=13  Identities=46%  Similarity=0.713  Sum_probs=4.6

Q ss_pred             CCCEEeCCCCccc
Q 004704          583 MIESLDISYNKLT  595 (735)
Q Consensus       583 ~L~~LdLs~N~l~  595 (735)
                      +|+.|||++|+++
T Consensus         2 ~L~~L~l~~n~L~   14 (17)
T PF13504_consen    2 NLRTLDLSNNRLT   14 (17)
T ss_dssp             T-SEEEETSS--S
T ss_pred             ccCEEECCCCCCC
Confidence            3444444444443

...

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=92.73  E-value=0.0055  Score=57.23  Aligned_cols=83  Identities=22%  Similarity=0.245  Sum_probs=71.3

Q ss_pred             cccceEECCCCcccCCCCccccccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccCCccccCCCCCCeEEc
Q 004704          534 NRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNV  613 (735)
Q Consensus       534 ~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~l  613 (735)
                      ...+.||++.|++. ..-..|.-++.|..|+++.|++. ..|..++++..+..+++..|..+ ..|.++..++.++++++
T Consensus        42 kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~  118 (326)
T KOG0473|consen   42 KRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQ  118 (326)
T ss_pred             ceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhh
Confidence            56778999999887 45566788889999999999998 78888999999999999999888 78999999999999999


Q ss_pred             ccCcCc
Q 004704          614 SYNNLS  619 (735)
Q Consensus       614 s~N~l~  619 (735)
                      -.|.+.
T Consensus       119 k~~~~~  124 (326)
T KOG0473|consen  119 KKTEFF  124 (326)
T ss_pred             ccCcch
Confidence            988764

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=92.64  E-value=0.0018  Score=69.85  Aligned_cols=191  Identities=27%  Similarity=0.253  Sum_probs=97.9

Q ss_pred             eeEEEeeCCCCCCCCch----hhhCCCCCCEEEccCCcCcccCchHHHhCC----CCCcEEECcCCcCcccC----cCCc
Q 004704           96 LIVLGLTKCNLNGSYPD----FLLHQYHLKYLDLSHNKLVGNFPTWLLRNN----PKLEVLLLKNNSFSGIL----QLPK  163 (735)
Q Consensus        96 L~~L~L~~n~l~~~~~~----~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l----~~L~~L~L~~n~l~~~~----~~~~  163 (735)
                      +..+.|.+|.+......    .+....+|..|++++|.+.+.--..+...+    ..+++|++..|.++...    ...+
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L  168 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL  168 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence            66777777777654333    344567777778887777532222221111    23455555555554332    1223


Q ss_pred             CCCCCcCEEEccCCcCCCcCChhHHHhcccCcEEECcCCcCCCCCCcccCCCCCCCEEECCCccccCccch---hhhhCC
Q 004704          164 AKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQ---SVVTGC  240 (735)
Q Consensus       164 ~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~---~~~~~l  240 (735)
                      .....++.++++.|.+.   +.+.....+.              ++..+....++++|++++|.++...-.   ..+...
T Consensus       169 ~~~~~l~~l~l~~n~l~---~~g~~~l~~~--------------l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~  231 (478)
T KOG4308|consen  169 EKNEHLTELDLSLNGLI---ELGLLVLSQA--------------LESAASPLSSLETLKLSRCGVTSSSCALLDEVLASG  231 (478)
T ss_pred             hcccchhHHHHHhcccc---hhhhHHHhhh--------------hhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhcc
Confidence            33445555555555442   1111000000              111222355666666666665521111   112222


Q ss_pred             CC-CCEEEccCCCCCCc----CcccccCC-CCCCEEEccccccCccc----cccccCCCCCCEEEeeCCccCC
Q 004704          241 FS-LELLDLSNNNFEGQ----FFSEYMNL-TRLRHLYFENNNFSGKI----KDGLLSSTSLQVLDISNNMLSG  303 (735)
Q Consensus       241 ~~-L~~L~L~~n~l~~~----~~~~~~~l-~~L~~L~L~~n~l~~~~----~~~l~~~~~L~~L~l~~n~l~~  303 (735)
                      .. +..+++..|.+.+.    ....+..+ ..++.++++.|.++...    .+.+..++.++++.+++|.+.+
T Consensus       232 ~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~  304 (478)
T KOG4308|consen  232 ESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD  304 (478)
T ss_pred             chhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence            33 55577777776643    12233444 56778888888877443    3445566788888888888763

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=92.10  E-value=0.097  Score=27.43  Aligned_cols=13  Identities=54%  Similarity=0.836  Sum_probs=5.8

Q ss_pred             CCCEEEccCCcCc
Q 004704          119 HLKYLDLSHNKLV  131 (735)
Q Consensus       119 ~L~~L~Ls~n~l~  131 (735)
                      +|++|++++|+++
T Consensus         2 ~L~~L~l~~n~L~   14 (17)
T PF13504_consen    2 NLRTLDLSNNRLT   14 (17)
T ss_dssp             T-SEEEETSS--S
T ss_pred             ccCEEECCCCCCC
Confidence            4556666666554

...

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=90.75  E-value=0.19  Score=29.73  Aligned_cols=14  Identities=36%  Similarity=0.565  Sum_probs=8.1

Q ss_pred             CCCCEEeCCCCccc
Q 004704          582 KMIESLDISYNKLT  595 (735)
Q Consensus       582 ~~L~~LdLs~N~l~  595 (735)
                      ++|+.|+|++|+|+
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00369        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            45555666666555

>smart00370 LRR Leucine-rich repeats, outliers

Probab=90.75  E-value=0.19  Score=29.73  Aligned_cols=14  Identities=36%  Similarity=0.565  Sum_probs=8.1

Q ss_pred             CCCCEEeCCCCccc
Q 004704          582 KMIESLDISYNKLT  595 (735)
Q Consensus       582 ~~L~~LdLs~N~l~  595 (735)
                      ++|+.|+|++|+|+
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00370        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            45555666666555

>smart00370 LRR Leucine-rich repeats, outliers

Probab=90.24  E-value=0.29  Score=28.93  Aligned_cols=16  Identities=44%  Similarity=0.598  Sum_probs=9.1

Q ss_pred             CCCCEEeCCCCcCCCC
Q 004704           20 TRLKILDISSNQLNGS   35 (735)
Q Consensus        20 ~~L~~L~Ls~n~i~~~   35 (735)
                      ++|++|+|++|+|+..
T Consensus         2 ~~L~~L~L~~N~l~~l   17 (26)
T smart00370        2 PNLRELDLSNNQLSSL   17 (26)
T ss_pred             CCCCEEECCCCcCCcC
Confidence            4556666666666533

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=90.24  E-value=0.29  Score=28.93  Aligned_cols=16  Identities=44%  Similarity=0.598  Sum_probs=9.1

Q ss_pred             CCCCEEeCCCCcCCCC
Q 004704           20 TRLKILDISSNQLNGS   35 (735)
Q Consensus        20 ~~L~~L~Ls~n~i~~~   35 (735)
                      ++|++|+|++|+|+..
T Consensus         2 ~~L~~L~L~~N~l~~l   17 (26)
T smart00369        2 PNLRELDLSNNQLSSL   17 (26)
T ss_pred             CCCCEEECCCCcCCcC
Confidence            4556666666666533

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=87.22  E-value=0.13  Score=29.74  Aligned_cols=15  Identities=40%  Similarity=0.656  Sum_probs=6.1

Q ss_pred             CCCCEEeCCCCcCCC
Q 004704           20 TRLKILDISSNQLNG   34 (735)
Q Consensus        20 ~~L~~L~Ls~n~i~~   34 (735)
                      ++|++|+|++|.|++
T Consensus         2 ~~L~~L~l~~n~i~~   16 (24)
T PF13516_consen    2 PNLETLDLSNNQITD   16 (24)
T ss_dssp             TT-SEEE-TSSBEHH
T ss_pred             CCCCEEEccCCcCCH
Confidence            344455555554443

...

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=84.22  E-value=0.035  Score=52.09  Aligned_cols=90  Identities=22%  Similarity=0.285  Sum_probs=73.8

Q ss_pred             CCC-ccccccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccCCccccCCCCCCeEEcccCcCcccCCCCCC
Q 004704          549 EIP-SDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPDKGQ  627 (735)
Q Consensus       549 ~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~  627 (735)
                      ++| .++......+.||++.|++. ..-..|.-++.|..||+|.|++. ..|..+..+..+..+++.+|.++-.+-+.++
T Consensus        32 ~~~v~ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k  109 (326)
T KOG0473|consen   32 EIPVREIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHSQQPKSQKK  109 (326)
T ss_pred             ccchhhhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchhhCCccccc
Confidence            444 45677788999999999998 56677999999999999999999 7999999999999999999999877666666


Q ss_pred             CCccCCcccCCCC
Q 004704          628 FATFDESSYRGNP  640 (735)
Q Consensus       628 ~~~~~~~~~~gN~  640 (735)
                      ..........|||
T Consensus       110 ~~~~k~~e~k~~~  122 (326)
T KOG0473|consen  110 EPHPKKNEQKKTE  122 (326)
T ss_pred             cCCcchhhhccCc
Confidence            6555555555666

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=83.41  E-value=0.087  Score=48.61  Aligned_cols=81  Identities=14%  Similarity=0.037  Sum_probs=32.9

Q ss_pred             CcEEECcCCcCcccCcCCcCCCCCcCEEEccCCcC-CCcCChhHHHhcccCcEEECcCCc-CCCCCCcccCCCCCCCEEE
Q 004704          145 LEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNF-RGKLPHNMGVILQKLMYMDISKNC-FEGNIPYSAGEMKELSLLD  222 (735)
Q Consensus       145 L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l-~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~  222 (735)
                      ++.++-++..|....-..+..++.++.|.+.++.- .+.--+.++...++|+.|++++|. |+...-..+.++++|+.|.
T Consensus       103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~  182 (221)
T KOG3864|consen  103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH  182 (221)
T ss_pred             EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence            34444444444433333344444444444444331 100011112223455555555552 3332233344555555554


Q ss_pred             CCC
Q 004704          223 LSR  225 (735)
Q Consensus       223 L~~  225 (735)
                      +++
T Consensus       183 l~~  185 (221)
T KOG3864|consen  183 LYD  185 (221)
T ss_pred             hcC
Confidence            443

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=81.05  E-value=0.22  Score=46.10  Aligned_cols=36  Identities=14%  Similarity=0.117  Sum_probs=24.3

Q ss_pred             CCeeEEEeeCCCCCCCCchhhhCCCCCCEEEccCCc
Q 004704           94 SQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNK  129 (735)
Q Consensus        94 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~  129 (735)
                      ..++.++-+++.|..+.-+.+..++.++.|.+.++.
T Consensus       101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck  136 (221)
T KOG3864|consen  101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCK  136 (221)
T ss_pred             ceEEEEecCCchHHHHHHHHHhccchhhhheecccc
Confidence            356677777777766666666677777777776664

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=80.77  E-value=1.3  Score=26.16  Aligned_cols=15  Identities=47%  Similarity=0.676  Sum_probs=10.7

Q ss_pred             cCCCCEEeCCCCccc
Q 004704          581 LKMIESLDISYNKLT  595 (735)
Q Consensus       581 l~~L~~LdLs~N~l~  595 (735)
                      +++|+.|+|++|+|+
T Consensus         1 L~~L~~L~L~~NkI~   15 (26)
T smart00365        1 LTNLEELDLSQNKIK   15 (26)
T ss_pred             CCccCEEECCCCccc
Confidence            356777777777776

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	735
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		1e-54
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		8e-04
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		1e-54
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		8e-04
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		1e-15
2z7x_B	520	Crystal Structure Of The Tlr1-Tlr2 Heterodimer Indu		2e-08
3a79_B	562	Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex Len		2e-06
3rg1_A	612	Crystal Structure Of The Rp105MD-1 Complex Length =		8e-06
2omz_A	466	Crystal Structure Of Inla Y369a/hec1 Complex Length		2e-04
4g8a_A	635	Crystal Structure Of Human Tlr4 Polymorphic Variant		3e-04
2omv_A	461	Crystal Structure Of Inla S192n Y369s/hec1 Complex		4e-04
2z63_A	570	Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 A		4e-04
1o6s_A	466	Internalin (Listeria Monocytogenes) E-Cadherin (Hum		5e-04
2omy_A	461	Crystal Structure Of Inla S192n/hec1 Complex Length		7e-04
3fxi_A	605	Crystal Structure Of The Human Tlr4-Human Md-2-E.Co		9e-04

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  211 bits (537), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 206/672 (30%), Positives = 313/672 (46%), Gaps = 60/672 (8%)
Query: 1   MNLERNFIGSPL--ITCLKNLTRLKILDISSNQLNGSLPSVISN---LTSLEYLDLSHNN 55
           ++L RN +  P+  +T L + + LK L++SSN L+   P  +S    L SLE LDLS N+
Sbjct: 105 LDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD--FPGKVSGGLKLNSLEVLDLSANS 162
Query: 56  FEGMFPLSSLANHS--KLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDF 113
             G   +  + +    +L+ L +S    +  V     +    L  L ++  N +   P F
Sbjct: 163 ISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCV---NLEFLDVSSNNFSTGIP-F 218
Query: 114 LLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLD 173
           L     L++LD+S NKL G+F +  +    +L++L + +N F G   +P      L +L 
Sbjct: 219 LGDCSALQHLDISGNKLSGDF-SRAISTCTELKLLNISSNQFVG--PIPPLPLKSLQYLS 275
Query: 174 ISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLS 233
           ++ N F G++P  +      L  +D+S N F G +P   G    L  L LS N FSG L 
Sbjct: 276 LAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELP 335
Query: 234 QSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQV 293
              +     L++LDLS N F G+      NL                       S SL  
Sbjct: 336 MDTLLKMRGLKVLDLSFNEFSGELPESLTNL-----------------------SASLLT 372
Query: 294 LDISNNMLSGHI-PHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSG 352
           LD+S+N  SG I P+   N  + L+ L +  N   G +P  L+N   L  L +S N LSG
Sbjct: 373 LDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSG 432
Query: 353 PIASSL-NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNL 411
            I SSL +LS +  L L  N L G IP EL     L TL L  N  +G IP  ++  +NL
Sbjct: 433 TIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNL 492
Query: 412 RFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLS--WRVGSDDVLNG 469
            ++ L  N L G IP  + +L+ LA++ LS N FSG+IP    +  S  W   + ++ NG
Sbjct: 493 NWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNG 552
Query: 470 SKLNSPELDEEIEFGS----------LGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEF 519
           + + +    +  +  +          + N+       G    L     R+    R+    
Sbjct: 553 T-IPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRN 611
Query: 520 AMKNRYEIYNG------SNVNRVTGLDLSCNQLTGEIPSDIGQLQAILAXXXXXXXXXGS 573
                  +Y G       N   +  LD+S N L+G IP +IG +  +           GS
Sbjct: 612 PCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGS 671
Query: 574 IPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPDKGQFATFDE 633
           IP+   +L+ +  LD+S NKL G+IP  ++AL  L+  ++S NNLSG  P+ GQF TF  
Sbjct: 672 IPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPP 731
Query: 634 SSYRGNPSLCAW 645
           + +  NP LC +
Sbjct: 732 AKFLNNPGLCGY 743

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 75/273 (27%), Positives = 118/273 (43%), Gaps = 38/273 (13%)
Query: 368 LQKNALNGLIPGELFR-SCKLVTLNLRDNTFSGRIPH--QINEHSNLRFLLLGGNHLQ-- 422
           L  + +NG + G  F+ S  L +L+L  N+ SG +     +   S L+FL +  N L   
Sbjct: 84  LSNSHINGSVSG--FKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFP 141
Query: 423 GPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDD-------VLNGSKLNSP 475
           G +   L +L  L ++DLS N  SG      ANV+ W V SD         ++G+K+ S 
Sbjct: 142 GKVSGGL-KLNSLEVLDLSANSISG------ANVVGW-VLSDGCGELKHLAISGNKI-SG 192
Query: 476 ELDEE----IEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGS 531
           ++D      +EF  + +N  S T        SAL+       ++  +F+          S
Sbjct: 193 DVDVSRCVNLEFLDVSSNNFS-TGIPFLGDCSALQHLDISGNKLSGDFSRAI-------S 244
Query: 532 NVNRVTGLDLSCNQLTGEIPSDIGQLQAILAXXXXXXXXXGSIPESFSN-LKMIESLDIS 590
               +  L++S NQ  G IP     L+++           G IP+  S     +  LD+S
Sbjct: 245 TCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLS 302
Query: 591 YNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTP 623
            N   G +PP   + + L    +S NN SG  P
Sbjct: 303 GNHFYGAVPPFFGSCSLLESLALSSNNFSGELP 335

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  211 bits (537), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 206/672 (30%), Positives = 313/672 (46%), Gaps = 60/672 (8%)
Query: 1   MNLERNFIGSPL--ITCLKNLTRLKILDISSNQLNGSLPSVISN---LTSLEYLDLSHNN 55
           ++L RN +  P+  +T L + + LK L++SSN L+   P  +S    L SLE LDLS N+
Sbjct: 102 LDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD--FPGKVSGGLKLNSLEVLDLSANS 159
Query: 56  FEGMFPLSSLANHS--KLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDF 113
             G   +  + +    +L+ L +S    +  V     +    L  L ++  N +   P F
Sbjct: 160 ISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCV---NLEFLDVSSNNFSTGIP-F 215
Query: 114 LLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLD 173
           L     L++LD+S NKL G+F +  +    +L++L + +N F G   +P      L +L 
Sbjct: 216 LGDCSALQHLDISGNKLSGDF-SRAISTCTELKLLNISSNQFVG--PIPPLPLKSLQYLS 272
Query: 174 ISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLS 233
           ++ N F G++P  +      L  +D+S N F G +P   G    L  L LS N FSG L 
Sbjct: 273 LAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELP 332
Query: 234 QSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQV 293
              +     L++LDLS N F G+      NL                       S SL  
Sbjct: 333 MDTLLKMRGLKVLDLSFNEFSGELPESLTNL-----------------------SASLLT 369
Query: 294 LDISNNMLSGHI-PHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSG 352
           LD+S+N  SG I P+   N  + L+ L +  N   G +P  L+N   L  L +S N LSG
Sbjct: 370 LDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSG 429
Query: 353 PIASSL-NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNL 411
            I SSL +LS +  L L  N L G IP EL     L TL L  N  +G IP  ++  +NL
Sbjct: 430 TIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNL 489
Query: 412 RFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLS--WRVGSDDVLNG 469
            ++ L  N L G IP  + +L+ LA++ LS N FSG+IP    +  S  W   + ++ NG
Sbjct: 490 NWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNG 549
Query: 470 SKLNSPELDEEIEFGS----------LGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEF 519
           + + +    +  +  +          + N+       G    L     R+    R+    
Sbjct: 550 T-IPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRN 608
Query: 520 AMKNRYEIYNG------SNVNRVTGLDLSCNQLTGEIPSDIGQLQAILAXXXXXXXXXGS 573
                  +Y G       N   +  LD+S N L+G IP +IG +  +           GS
Sbjct: 609 PCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGS 668
Query: 574 IPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPDKGQFATFDE 633
           IP+   +L+ +  LD+S NKL G+IP  ++AL  L+  ++S NNLSG  P+ GQF TF  
Sbjct: 669 IPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPP 728
Query: 634 SSYRGNPSLCAW 645
           + +  NP LC +
Sbjct: 729 AKFLNNPGLCGY 740

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 75/273 (27%), Positives = 118/273 (43%), Gaps = 38/273 (13%)
Query: 368 LQKNALNGLIPGELFR-SCKLVTLNLRDNTFSGRIPH--QINEHSNLRFLLLGGNHLQ-- 422
           L  + +NG + G  F+ S  L +L+L  N+ SG +     +   S L+FL +  N L   
Sbjct: 81  LSNSHINGSVSG--FKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFP 138
Query: 423 GPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDD-------VLNGSKLNSP 475
           G +   L +L  L ++DLS N  SG      ANV+ W V SD         ++G+K+ S 
Sbjct: 139 GKVSGGL-KLNSLEVLDLSANSISG------ANVVGW-VLSDGCGELKHLAISGNKI-SG 189
Query: 476 ELDEE----IEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGS 531
           ++D      +EF  + +N  S T        SAL+       ++  +F+          S
Sbjct: 190 DVDVSRCVNLEFLDVSSNNFS-TGIPFLGDCSALQHLDISGNKLSGDFSRAI-------S 241
Query: 532 NVNRVTGLDLSCNQLTGEIPSDIGQLQAILAXXXXXXXXXGSIPESFSN-LKMIESLDIS 590
               +  L++S NQ  G IP     L+++           G IP+  S     +  LD+S
Sbjct: 242 TCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLS 299
Query: 591 YNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTP 623
            N   G +PP   + + L    +S NN SG  P
Sbjct: 300 GNHFYGAVPPFFGSCSLLESLALSSNNFSGELP 332

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 81.6 bits (200), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 86/319 (26%), Positives = 130/319 (40%), Gaps = 84/319 (26%)
Query: 330 VPVQLNNLERLRILDISE-NRLSGPIASSL-NLSSVEHLSLQKNALNGLIPGELFRSCKL 387
           +P  L NL  L  L I   N L GPI  ++  L+ + +L +    ++G IP  L +   L
Sbjct: 68  IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 388 VTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKL-AMMDLSRNKFS 446
           VTL+   N  SG +P  I+   NL  +   GN + G IPD      KL   M +SRN+ +
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187
Query: 447 GSIPPCFANV-LSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSAL 505
           G IPP FAN+ L++   S ++L G        D  + FGS  N +  +           L
Sbjct: 188 GKIPPTFANLNLAFVDLSRNMLEG--------DASVLFGSDKNTQKIH-----------L 228
Query: 506 EKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILAXXX 565
            K +   +  ++  +           N+N   GLDL  N++                   
Sbjct: 229 AKNSLAFDLGKVGLS----------KNLN---GLDLRNNRI------------------- 256
Query: 566 XXXXXXGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPDK 625
                 G++P+  + LK + SL++S+N L G+I                        P  
Sbjct: 257 -----YGTLPQGLTQLKFLHSLNVSFNNLCGEI------------------------PQG 287
Query: 626 GQFATFDESSYRGNPSLCA 644
           G    FD S+Y  N  LC 
Sbjct: 288 GNLQRFDVSAYANNKCLCG 306

>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By Binding Of A Tri-Acylated Lipopeptide Length = 520

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 123/491 (25%), Positives = 185/491 (37%), Gaps = 120/491 (24%)
Query: 1   MNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNN----- 55
           +N+ +N+I     + + +L++L+IL IS N++     SV      LEYLDLSHN      
Sbjct: 26  LNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKIS 85
Query: 56  ----------------FEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQ---- 95
                           F+ +       N S+L+ L LST     H++  + LP +     
Sbjct: 86  CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTT----HLEKSSVLPIAHLNIS 141
Query: 96  --LIVLGLT---KCNLNGSYPDFLLHQYHLKY-------------------LDLSHNKLV 131
             L+VLG T   K +  G   DF     H+ +                   L+LS+ K V
Sbjct: 142 KVLLVLGETYGEKEDPEG-LQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCV 200
Query: 132 ------GNFPTWL--LRNNPKLEVLLLKN-----NSFSGILQLPKAKHDFLHHLDISCNN 178
                   F + L  L+ NPKL  L L N     NSF  ILQL    H  + +  IS   
Sbjct: 201 LEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQL--VWHTTVWYFSISNVK 258
Query: 179 FRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVT 238
            +G+L                       +  YS   +K LS+  +  + F  G  QS + 
Sbjct: 259 LQGQLDFR--------------------DFDYSGTSLKALSIHQVVSDVF--GFPQSYIY 296
Query: 239 GCFS-------------------------LELLDLSNNNFEGQFFSEYMNLTRLRHLYFE 273
             FS                            LD SNN      F    +LT L  L  +
Sbjct: 297 EIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQ 356
Query: 274 NNNFS--GKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVP 331
            N      KI +      SLQ LDIS N +S        +++  L  L+MS N L   + 
Sbjct: 357 MNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIF 416
Query: 332 VQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLN 391
             L    R+++LD+  N++       + L +++ L++  N L  +  G   R   L  + 
Sbjct: 417 RCLP--PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIW 474
Query: 392 LRDNTFSGRIP 402
           L  N +    P
Sbjct: 475 LHTNPWDCSCP 485

>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex Length = 562

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 80/178 (44%), Gaps = 10/178 (5%)
Query: 242 SLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSS--TSLQVLDISNN 299
           S   L+ + N F    F     L RL+ L  + N      K  L++   +SL+ LD+S N
Sbjct: 354 SFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLN 413
Query: 300 MLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLN 359
            L+ H       ++  + +L++S N L G+V   L    ++++LD+  NR+        +
Sbjct: 414 SLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVTH 471
Query: 360 LSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIP------HQINEHSNL 411
           L +++ L++  N L  +  G   R   L  + L DN +    P        IN+HS +
Sbjct: 472 LQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINKHSGV 529

>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex Length = 612

Iteration: 1
 Score = 49.3 bits (116), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 79/331 (23%), Positives = 151/331 (45%), Gaps = 33/331 (9%)
Query: 1   MNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMF 60
           +NL+++       +  +  TR++ LD+++  LNG LPS I  + SL+ L L+ N+F+ + 
Sbjct: 258 INLQKHRFSDLSSSTFRCFTRVQELDLTAAHLNG-LPSGIEGMNSLKKLVLNANSFDQLC 316
Query: 61  PLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQ--Y 118
            +++ A+   L  L +      L + T        L  L L+  ++  S    L  +   
Sbjct: 317 QINA-ASFPSLRDLYIKGNMRKLDLGTRCLEKLENLQKLDLSHSDIEASDCCNLQLKNLR 375
Query: 119 HLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNN 178
           HL+YL+LS+N+ +G       +  P+LE+L                        D++  +
Sbjct: 376 HLQYLNLSYNEPLG-LEDQAFKECPQLELL------------------------DVAFTH 410
Query: 179 FRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYF-SGGLSQS-V 236
              K PH+    L  L  +++S    + +  +    +++L  L+L  N F  G +S++ +
Sbjct: 411 LHVKAPHSPFQNLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQDGSISKTNL 470
Query: 237 VTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDI 296
           +    SLE+L LS+ N        +  L  + HL   +N+ +G   D L     L  L++
Sbjct: 471 LQMVGSLEILILSSCNLLSIDQQAFHGLRNVNHLDLSHNSLTGDSMDALSHLKGL-YLNM 529
Query: 297 SNNMLSGHIPHWMGNFSSELEILSMSKNHLE 327
           ++N +    PH +   S +  I+++S N L+
Sbjct: 530 ASNNIRIIPPHLLPALSQQ-SIINLSHNPLD 559

>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex Length = 466

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 83/289 (28%), Positives = 129/289 (44%), Gaps = 50/289 (17%)
Query: 13  ITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLE 72
           IT LKNLT+L  + +++NQ+    P  ++NLT+L  L L +N    + PL +L N ++LE
Sbjct: 82  ITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLE 139
Query: 73  GLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVG 132
              LS+ N    +   + L + Q +  G    +L       L +   L+ LD+S NK+  
Sbjct: 140 ---LSS-NTISDISALSGLTSLQQLSFGNQVTDLKP-----LANLTTLERLDISSNKVSD 190
Query: 133 NFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLD-ISCNNFRGKLPHNMGVI- 190
                 L N   LE L+  NN  S I  L       L +LD +S N   G    ++G + 
Sbjct: 191 ISVLAKLTN---LESLIATNNQISDITPL-----GILTNLDELSLN---GNQLKDIGTLA 239
Query: 191 -LQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLS 249
            L  L  +D++ N      P S   + +L+ L L  N  S   + S + G  +L  L+L+
Sbjct: 240 SLTNLTDLDLANNQISNLAPLSG--LTKLTELKLGANQIS---NISPLAGLTALTNLELN 294
Query: 250 NNNFEG----------QFFSEYMN----------LTRLRHLYFENNNFS 278
            N  E            + + Y N          LT+L+ L+F NN  S
Sbjct: 295 ENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVS 343

>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g And T399i In Complex With Md-2 And Lps Length = 635

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 72/313 (23%), Positives = 125/313 (39%), Gaps = 36/313 (11%)
Query: 12  LITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKL 71
           L  CL N++   ++ ++  ++        S     ++L+L +  F G FP   L +  +L
Sbjct: 301 LFNCLTNVSSFSLVSVTIERVKD-----FSYNFGWQHLELVNCKF-GQFPTLKLKSLKRL 354
Query: 72  EGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLV 131
                 T N   +  +E  LP+ + + L     +  G           LKYLDLS N ++
Sbjct: 355 TF----TSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVI 410
Query: 132 GNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVIL 191
                               +++F G+ QL         HLD   +N +     ++ + L
Sbjct: 411 T------------------MSSNFLGLEQL--------EHLDFQHSNLKQMSEFSVFLSL 444
Query: 192 QKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNN 251
           + L+Y+DIS              +  L +L ++ N F       + T   +L  LDLS  
Sbjct: 445 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 504
Query: 252 NFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGN 311
             E    + + +L+ L+ L   +NNF            SLQVLD S N +       + +
Sbjct: 505 QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQH 564
Query: 312 FSSELEILSMSKN 324
           F S L  L++++N
Sbjct: 565 FPSSLAFLNLTQN 577

>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex Length = 461

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 87/295 (29%), Positives = 131/295 (44%), Gaps = 62/295 (21%)
Query: 13  ITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLE 72
           IT LKNLT+L  + +++NQ+    P  ++NLT+L  L L +N    + PL +L N ++LE
Sbjct: 78  ITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLE 135
Query: 73  GLLLSTRNNTLHVKTENWLPTSQLIVL-GLT---KCNLNGSYPDF--LLHQYHLKYLDLS 126
              LS+  NT+          S +  L GLT   + N      D   L +   L+ LD+S
Sbjct: 136 ---LSS--NTI----------SDISALSGLTSLQQLNFGNQVTDLKPLANLTTLERLDIS 180
Query: 127 HNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLD-ISCNNFRGKLPH 185
            NK+        L N   LE L+  NN  S I  L       L +LD +S N   G    
Sbjct: 181 SNKVSDISVLAKLTN---LESLIATNNQISDITPL-----GILTNLDELSLN---GNQLK 229
Query: 186 NMGVI--LQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSL 243
           ++G +  L  L  +D++ N      P S   + +L+ L L  N  S   + S + G  +L
Sbjct: 230 DIGTLASLTNLTDLDLANNQISNLAPLSG--LTKLTELKLGANQIS---NISPLAGLTAL 284
Query: 244 ELLDLSNNNFEG----------QFFSEYMN----------LTRLRHLYFENNNFS 278
             L+L+ N  E            + + Y N          LT+L+ L+F NN  S
Sbjct: 285 TNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFSNNKVS 339

>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 570

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 68/237 (28%), Positives = 104/237 (43%), Gaps = 36/237 (15%)
Query: 170 HHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRN--Y 227
            HL++    F G+ P    + L+ L  +  + N  +G   +S  ++  L  LDLSRN   
Sbjct: 307 QHLELVNCKF-GQFP---TLKLKSLKRLTFTSN--KGGNAFSEVDLPSLEFLDLSRNGLS 360
Query: 228 FSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIK-DGLL 286
           F G  SQS   G  SL+ LDLS N       S ++ L +L HL F+++N     +    L
Sbjct: 361 FKGCCSQSDF-GTTSLKYLDLSFNGV-ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL 418
Query: 287 SSTSLQVLDIS------------NNMLSGHIPHWMGNFSSE------------LEILSMS 322
           S  +L  LDIS            N + S  +    GN   E            L  L +S
Sbjct: 419 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 478
Query: 323 KNHLEGNVPVQLNNLERLRILDISENRL-SGPIASSLNLSSVEHLSLQKNALNGLIP 378
           +  LE   P   N+L  L++L+++ N+L S P      L+S++ + L  N  +   P
Sbjct: 479 QCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535

>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human) Recognition Complex Length = 466

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 82/289 (28%), Positives = 129/289 (44%), Gaps = 50/289 (17%)
Query: 13  ITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLE 72
           IT LKNLT+L  + +++NQ+    P  ++NLT+L  L L +N    + PL +L N ++LE
Sbjct: 83  ITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLE 140
Query: 73  GLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVG 132
              LS+ N    +   + L + Q +  G    +L       L +   L+ LD+S NK+  
Sbjct: 141 ---LSS-NTISDISALSGLTSLQQLSFGNQVTDLKP-----LANLTTLERLDISSNKVSD 191
Query: 133 NFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLD-ISCNNFRGKLPHNMGVI- 190
                +L     LE L+  NN  S I  L       L +LD +S N   G    ++G + 
Sbjct: 192 ---ISVLAKLTNLESLIATNNQISDITPL-----GILTNLDELSLN---GNQLKDIGTLA 240
Query: 191 -LQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLS 249
            L  L  +D++ N      P S   + +L+ L L  N  S   + S + G  +L  L+L+
Sbjct: 241 SLTNLTDLDLANNQISNLAPLSG--LTKLTELKLGANQIS---NISPLAGLTALTNLELN 295
Query: 250 NNNFEG----------QFFSEYMN----------LTRLRHLYFENNNFS 278
            N  E            + + Y N          LT+L+ L+F NN  S
Sbjct: 296 ENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVS 344

>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex Length = 461

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 87/295 (29%), Positives = 131/295 (44%), Gaps = 62/295 (21%)
Query: 13  ITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLE 72
           IT LKNLT+L  + +++NQ+    P  ++NLT+L  L L +N    + PL +L N ++LE
Sbjct: 78  ITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLE 135
Query: 73  GLLLSTRNNTLHVKTENWLPTSQLIVL-GLT---KCNLNGSYPDF--LLHQYHLKYLDLS 126
              LS+  NT+          S +  L GLT   + N      D   L +   L+ LD+S
Sbjct: 136 ---LSS--NTI----------SDISALSGLTSLQQLNFGNQVTDLKPLANLTTLERLDIS 180
Query: 127 HNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLD-ISCNNFRGKLPH 185
            NK+        L N   LE L+  NN  S I  L       L +LD +S N   G    
Sbjct: 181 SNKVSDISVLAKLTN---LESLIATNNQISDITPL-----GILTNLDELSLN---GNQLK 229
Query: 186 NMGVI--LQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSL 243
           ++G +  L  L  +D++ N      P S   + +L+ L L  N  S   + S + G  +L
Sbjct: 230 DIGTLASLTNLTDLDLANNQISNLAPLSG--LTKLTELKLGANQIS---NISPLAGLTAL 284
Query: 244 ELLDLSNNNFEG----------QFFSEYMN----------LTRLRHLYFENNNFS 278
             L+L+ N  E            + + Y N          LT+L+ L+F NN  S
Sbjct: 285 TNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVS 339

>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps Ra Complex Length = 605

Iteration: 1
 Score = 42.4 bits (98), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 72/313 (23%), Positives = 125/313 (39%), Gaps = 36/313 (11%)
Query: 12  LITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKL 71
           L  CL N++   ++ ++  ++        S     ++L+L +  F G FP   L +  +L
Sbjct: 277 LFNCLTNVSSFSLVSVTIERVKD-----FSYNFGWQHLELVNCKF-GQFPTLKLKSLKRL 330
Query: 72  EGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLV 131
                 T N   +  +E  LP+ + + L     +  G           LKYLDLS N ++
Sbjct: 331 TF----TSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI 386
Query: 132 GNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVIL 191
                               +++F G+ QL         HLD   +N +     ++ + L
Sbjct: 387 T------------------MSSNFLGLEQL--------EHLDFQHSNLKQMSEFSVFLSL 420
Query: 192 QKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNN 251
           + L+Y+DIS              +  L +L ++ N F       + T   +L  LDLS  
Sbjct: 421 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 480
Query: 252 NFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGN 311
             E    + + +L+ L+ L   +NNF            SLQVLD S N +       + +
Sbjct: 481 QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQH 540
Query: 312 FSSELEILSMSKN 324
           F S L  L++++N
Sbjct: 541 FPSSLAFLNLTQN 553

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	735
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-160
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-99
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-85
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-59
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-15
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-15
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-14
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-80
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-73
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-61
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-55
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-43
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-34
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-28
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-62
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-54
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-45
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-14
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-61
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-61
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-52
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-47
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-44
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-58
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-52
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-44
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-40
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-21
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-12
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-57
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-56
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-54
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-38
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-16
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-56
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-53
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-31
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-05
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-53
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-50
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-44
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-38
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-33
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	6e-28
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	7e-27
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	6e-22
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-21
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-20
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-20
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-15
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-10
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-42
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-40
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-27
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-26
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-40
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-38
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-27
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-26
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-37
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-34
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-32
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-30
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-29
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-24
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-34
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-32
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-28
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-16
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-30
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-29
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-26
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-24
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	9e-11
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-29
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-22
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-09
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-29
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-26
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-25
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-22
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-19
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-17
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-15
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-28
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-25
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	9e-24
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-17
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-15
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	8e-13
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-11
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-28
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-27
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-27
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-14
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-27
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-24
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-20
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-19
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	9e-27
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	5e-21
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-14
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-12
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-12
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-09
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-07
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	9e-27
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-25
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-20
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-15
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-15
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-11
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-26
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-24
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-23
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-23
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-19
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-13
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-22
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-19
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	7e-17
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-15
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	7e-15
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-04
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-22
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-22
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-20
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-20
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-18
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-10
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-09
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-08
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-08
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-08
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-21
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-20
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-19
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-18
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-17
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-04
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-20
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-15
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-14
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-14
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-13
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-13
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-13
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-09
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-08
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-19
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-18
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-17
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-17
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	8e-15
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	9e-14
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-12
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-04
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-18
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	6e-14
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-07
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	5e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-18
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-16
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-15
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-14
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	9e-08
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-18
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-18
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-17
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-17
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-14
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-14
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-04
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-18
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-18
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-16
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-16
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	9e-16
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-14
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	7e-18
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-16
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-15
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-14
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-11
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	8e-18
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-17
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-17
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-17
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-15
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-13
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-10
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-17
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-17
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	8e-17
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-16
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-15
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-12
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-09
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-08
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-16
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-15
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-15
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-14
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-09
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	7e-16
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-15
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	9e-14
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-11
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-11
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	7e-11
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-10
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-07
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-04
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	7e-15
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	6e-13
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-12
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-10
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-07
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	6e-13
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	9e-13
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-12
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	7e-11
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	8e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-13
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-12
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	9e-12
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	6e-10
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-12
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	1e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-12
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	9e-12
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	8e-11
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-08
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-12
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-09
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-08
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-08
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-08
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	5e-07
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	7e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	5e-12
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	7e-10
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	6e-07
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-06
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	3e-11
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	3e-09
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-08
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	6e-11
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	7e-10
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-09
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	8e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-10
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-10
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	7e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-09
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	7e-09
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	6e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	8e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-08
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-08
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-08
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	6e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	6e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	8e-04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-05
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	5e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-08
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	8e-08
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	5e-08
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	7e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	9e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	9e-04
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	1e-07
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	4e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-07
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	6e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	3e-07
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-06
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	8e-06
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	7e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	9e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	5e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	6e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	6e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	7e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-04
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	4e-06
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	6e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	4e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-05
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	6e-04
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	4e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	1e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  480 bits (1239), Expect = e-160
 Identities = 192/645 (29%), Positives = 289/645 (44%), Gaps = 47/645 (7%)

Query: 6   NFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVI---SNLTSLEYLDLSHNNFEGMFPL 62
                  ++    L  L++LD+S+N ++G+             L++L +S N   G   +
Sbjct: 137 TLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV 196

Query: 63  SSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKY 122
           S   N                            L  L ++  N +   P FL     L++
Sbjct: 197 SRCVN----------------------------LEFLDVSSNNFSTGIP-FLGDCSALQH 227

Query: 123 LDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGK 182
           LD+S NKL G+F   +     +L++L + +N F G   +P      L +L ++ N F G+
Sbjct: 228 LDISGNKLSGDFSRAI-STCTELKLLNISSNQFVG--PIPPLPLKSLQYLSLAENKFTGE 284

Query: 183 LPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFS 242
           +P  +      L  +D+S N F G +P   G    L  L LS N FSG L    +     
Sbjct: 285 IPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRG 344

Query: 243 LELLDLSNNNFEGQFFSEYMNLT-RLRHLYFENNNFSGKI--KDGLLSSTSLQVLDISNN 299
           L++LDLS N F G+      NL+  L  L   +NNFSG I          +LQ L + NN
Sbjct: 345 LKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNN 404

Query: 300 MLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSL- 358
             +G IP  + N S  L  L +S N+L G +P  L +L +LR L +  N L G I   L 
Sbjct: 405 GFTGKIPPTLSNCSE-LVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELM 463

Query: 359 NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGG 418
            + ++E L L  N L G IP  L     L  ++L +N  +G IP  I    NL  L L  
Sbjct: 464 YVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSN 523

Query: 419 NHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELD 478
           N   G IP +L   + L  +DL+ N F+G+IP            + + + G +    + D
Sbjct: 524 NSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFK--QSGKIAANFIAGKRYVYIKND 581

Query: 479 EEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTG 538
              +      N            L+ L  R   +    I   +   +      N   +  
Sbjct: 582 GMKKECHGAGNLLEFQGIRS-EQLNRLSTRNPCN----ITSRVYGGHTSPTFDNNGSMMF 636

Query: 539 LDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQI 598
           LD+S N L+G IP +IG +  +  LNL +N +SGSIP+   +L+ +  LD+S NKL G+I
Sbjct: 637 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRI 696

Query: 599 PPQLTALNFLSIFNVSYNNLSGRTPDKGQFATFDESSYRGNPSLC 643
           P  ++AL  L+  ++S NNLSG  P+ GQF TF  + +  NP LC
Sbjct: 697 PQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLC 741

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  321 bits (825), Expect = 5e-99
 Identities = 131/461 (28%), Positives = 190/461 (41%), Gaps = 40/461 (8%)

Query: 1   MNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMF 60
           +++  N +       +   T LK+L+ISSNQ  G +P     L SL+YL L+ N F G  
Sbjct: 228 LDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEI 285

Query: 61  PLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHL 120
           P         L GL LS                           +  G+ P F      L
Sbjct: 286 PDFLSGACDTLTGLDLSG-------------------------NHFYGAVPPFFGSCSLL 320

Query: 121 KYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKA---KHDFLHHLDISCN 177
           + L LS N   G  P   L     L+VL L  N FSG  +LP++       L  LD+S N
Sbjct: 321 ESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSG--ELPESLTNLSASLLTLDLSSN 378

Query: 178 NFRGKLPHNMG-VILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSV 236
           NF G +  N+       L  + +  N F G IP +     EL  L LS NY SG +  S+
Sbjct: 379 NFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSL 438

Query: 237 VTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDI 296
            +    L  L L  N  EG+   E M +  L  L  + N+ +G+I  GL + T+L  + +
Sbjct: 439 GS-LSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISL 497

Query: 297 SNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIAS 356
           SNN L+G IP W+G   + L IL +S N   GN+P +L +   L  LD++ N  +G I +
Sbjct: 498 SNNRLTGEIPKWIGRLEN-LAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPA 556

Query: 357 SLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNT--FSGRIPHQINEHSNLRFL 414
           ++   S     +  N + G     +         +   N   F G    Q+N  S     
Sbjct: 557 AMFKQS---GKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPC 613

Query: 415 LLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFAN 455
            +      G           +  +D+S N  SG IP    +
Sbjct: 614 NITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGS 654

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  283 bits (727), Expect = 8e-85
 Identities = 141/457 (30%), Positives = 207/457 (45%), Gaps = 51/457 (11%)

Query: 13  ITCLKNLTRLKILDISSNQLN---GSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHS 69
           +TC     ++  +D+SS  LN    ++ S + +LT LE L LS+++  G          +
Sbjct: 45  VTC--RDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS--GFKCSA 100

Query: 70  KLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDF--LLHQYHLKYLDLSH 127
            L  L LS                           +L+G       L     LK+L++S 
Sbjct: 101 SLTSLDLSR-------------------------NSLSGPVTTLTSLGSCSGLKFLNVSS 135

Query: 128 NKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLH---HLDISCNNFRGKLP 184
           N L              LEVL L  NS SG   +     D      HL IS N   G + 
Sbjct: 136 NTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD 195

Query: 185 HNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLE 244
            +       L ++D+S N F   IP   G+   L  LD+S N  SG  S++ ++ C  L+
Sbjct: 196 VSR---CVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRA-ISTCTELK 250

Query: 245 LLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSS-TSLQVLDISNNMLSG 303
           LL++S+N F G        L  L++L    N F+G+I D L  +  +L  LD+S N   G
Sbjct: 251 LLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYG 308

Query: 304 HIPHWMGNFSSELEILSMSKNHLEGNVPVQ-LNNLERLRILDISENRLSGPIASSL-NLS 361
            +P + G+ S  LE L++S N+  G +P+  L  +  L++LD+S N  SG +  SL NLS
Sbjct: 309 AVPPFFGSCSL-LESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLS 367

Query: 362 -SVEHLSLQKNALNGLIPGELFRSCK--LVTLNLRDNTFSGRIPHQINEHSNLRFLLLGG 418
            S+  L L  N  +G I   L ++ K  L  L L++N F+G+IP  ++  S L  L L  
Sbjct: 368 ASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSF 427

Query: 419 NHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFAN 455
           N+L G IP  L  L KL  + L  N   G IP     
Sbjct: 428 NYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMY 464

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  212 bits (541), Expect = 7e-59
 Identities = 98/358 (27%), Positives = 150/358 (41%), Gaps = 40/358 (11%)

Query: 1   MNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMF 60
           + L+ N     +   L N + L  L +S N L+G++PS + +L+ L  L L  N  EG  
Sbjct: 399 LYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEI 458

Query: 61  PLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHL 120
           P   L     LE L+L    N                       +L G  P  L +  +L
Sbjct: 459 P-QELMYVKTLETLILD--FN-----------------------DLTGEIPSGLSNCTNL 492

Query: 121 KYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDF--LHHLDISCNN 178
            ++ LS+N+L G  P W +     L +L L NNSFSG   +P    D   L  LD++ N 
Sbjct: 493 NWISLSNNRLTGEIPKW-IGRLENLAILKLSNNSFSG--NIPAELGDCRSLIWLDLNTNL 549

Query: 179 FRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNY--FSGGLSQSV 236
           F G +P  M           I+ N   G                 + N   F G  S+ +
Sbjct: 550 FNGTIPAAMFKQSG-----KIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQL 604

Query: 237 VTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDI 296
                +    ++++  + G     + N   +  L    N  SG I   + S   L +L++
Sbjct: 605 NR-LSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNL 663

Query: 297 SNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPI 354
            +N +SG IP  +G+    L IL +S N L+G +P  ++ L  L  +D+S N LSGPI
Sbjct: 664 GHNDISGSIPDEVGDLRG-LNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPI 720

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 79.2 bits (196), Expect = 2e-15
 Identities = 29/97 (29%), Positives = 46/97 (47%), Gaps = 6/97 (6%)

Query: 532 NVNRVTGLDLSCNQLT---GEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLD 588
             ++VT +DLS   L      + S +  L  + +L LSN+ ++GS+   F     + SLD
Sbjct: 48  RDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG-FKCSASLTSLD 106

Query: 589 ISYNKLTGQIPP--QLTALNFLSIFNVSYNNLSGRTP 623
           +S N L+G +     L + + L   NVS N L     
Sbjct: 107 LSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGK 143

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 77.3 bits (191), Expect = 9e-15
 Identities = 26/104 (25%), Positives = 42/104 (40%), Gaps = 6/104 (5%)

Query: 526 EIYNGSNVNRVTGLDLSCNQLTGEIPSD--IGQLQAILALNLSNNSLSGSIP-ESFSNLK 582
            +        +T LDLS N L+G + +   +G    +  LN+S+N+L           L 
Sbjct: 92  SVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLN 151

Query: 583 MIESLDISYNKLTGQIPPQLTA---LNFLSIFNVSYNNLSGRTP 623
            +E LD+S N ++G              L    +S N +SG   
Sbjct: 152 SLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD 195

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 77.3 bits (191), Expect = 1e-14
 Identities = 24/97 (24%), Positives = 45/97 (46%), Gaps = 4/97 (4%)

Query: 531 SNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPE--SFSNLKMIESLD 588
            ++  +  L LS + + G +        ++ +L+LS NSLSG +    S  +   ++ L+
Sbjct: 74  LSLTGLESLFLSNSHINGSVSG-FKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLN 132

Query: 589 ISYNKLTGQIP-PQLTALNFLSIFNVSYNNLSGRTPD 624
           +S N L           LN L + ++S N++SG    
Sbjct: 133 VSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVV 169

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  268 bits (686), Expect = 7e-80
 Identities = 121/665 (18%), Positives = 229/665 (34%), Gaps = 72/665 (10%)

Query: 2   NLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFP 61
           NL  N +           ++L  LD+  N ++   P +   L  L+ L+L HN    +  
Sbjct: 31  NLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQL-S 89

Query: 62  LSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLK 121
             + A  + L  L L   N+   +K   ++    LI L L+   L+ +     +   +L+
Sbjct: 90  DKTFAFCTNLTELHLM-SNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQ 148

Query: 122 YLDLSHNKLVGNFPTWL-LRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFR 180
            L LS+NK+       L +  N  L+ L L +N               L  L ++     
Sbjct: 149 ELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLG 208

Query: 181 GKLPHNMGVILQ--KLMYMDISKNCFEGNIPYSAGEMKELSL--LDLSRNYFSGGLSQSV 236
             L   + + L    +  + +S +        +   +K  +L  LDLS N  +  +    
Sbjct: 209 PSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNV-VGNDS 267

Query: 237 VTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSS-------- 288
                 LE   L  NN +  F      L  +R+L  + +     I    L          
Sbjct: 268 FAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQW 327

Query: 289 -TSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNV--PVQLNNLE--RLRIL 343
              L+ L++ +N + G   +      + L+ LS+S +             +L    L IL
Sbjct: 328 LKCLEHLNMEDNDIPGIKSNMFTGLIN-LKYLSLSNSFTSLRTLTNETFVSLAHSPLHIL 386

Query: 344 DISENRLSGPIASSL-NLSSVEHLSLQKNALNGLIPGELFRSC-KLVTLNLRDNTFSGRI 401
           ++++N++S   + +   L  +E L L  N +   + G+ +R    +  + L  N +    
Sbjct: 387 NLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLT 446

Query: 402 PHQINEHSNLRFLLLGGNHLQG--PIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSW 459
            +      +L+ L+L    L+     P     L+ L ++DLS N  +         +   
Sbjct: 447 RNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKL 506

Query: 460 RVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEF 519
            +               LD       L +N            L+ L K A     +    
Sbjct: 507 EI---------------LD-------LQHNN-----------LARLWKHANPGGPIYFL- 532

Query: 520 AMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFS 579
                        ++ +  L+L  N            L  +  ++L  N+L+      F+
Sbjct: 533 -----------KGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFN 581

Query: 580 NLKMIESLDISYNKLTGQIPPQL-TALNFLSIFNVSYNNLSGRTPDKGQFATFDESSYRG 638
           N   ++SL++  N +T         A   L+  ++ +N           F  +   ++  
Sbjct: 582 NQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTN 641

Query: 639 NPSLC 643
            P L 
Sbjct: 642 IPELS 646

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  249 bits (638), Expect = 6e-73
 Identities = 121/635 (19%), Positives = 205/635 (32%), Gaps = 78/635 (12%)

Query: 2   NLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFP 61
           NL+ N +           T L  L + SN +     +      +L  LDLSHN       
Sbjct: 79  NLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSS-TK 137

Query: 62  LSSLANHSKLEGLLLSTRNN--TLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYH 119
           L +      L+ LLLS  N    L  +  +    S L  L L+   +    P        
Sbjct: 138 LGTQVQLENLQELLLS-NNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGR 196

Query: 120 LKYLDLSHNKLVGNFPTWLLR--NNPKLEVLLLKNNSFSGILQ--LPKAKHDFLHHLDIS 175
           L  L L++ +L  +    L     N  +  L L N+  S          K   L  LD+S
Sbjct: 197 LFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLS 256

Query: 176 CNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQS 235
            NN       +    L +L Y  +  N  +    +S   +  +  L+L R+         
Sbjct: 257 YNNLNVVGNDSFAW-LPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRS--------- 306

Query: 236 VVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLD 295
                       +S  +        +  L  L HL  E+N+  G   +      +L+ L 
Sbjct: 307 -------FTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLS 359

Query: 296 ISNNMLSGHIPH---WMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSG 352
           +SN+  S        ++    S L IL+++KN +        + L  L +LD+  N +  
Sbjct: 360 LSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQ 419

Query: 353 PIASSL--NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSG--RIPHQINEH 408
            +       L ++  + L  N    L          L  L LR          P      
Sbjct: 420 ELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPL 479

Query: 409 SNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLN 468
            NL  L L  N++     D L  L+KL ++DL  N  +            + +     L+
Sbjct: 480 RNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLH 539

Query: 469 GSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIY 528
                   L+       L +N        +++ L  L+                      
Sbjct: 540 -------ILN-------LESNGFDEIPVEVFKDLFELKI--------------------- 564

Query: 529 NGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFS-NLKMIESL 587
                     +DL  N L     S      ++ +LNL  N ++    + F    + +  L
Sbjct: 565 ----------IDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTEL 614

Query: 588 DISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRT 622
           D+ +N            +N+++  + +   LS   
Sbjct: 615 DMRFNPFDCTCESIAWFVNWINETHTNIPELSSHY 649

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  217 bits (554), Expect = 3e-61
 Identities = 106/483 (21%), Positives = 176/483 (36%), Gaps = 39/483 (8%)

Query: 1   MNLERNFIGS--PLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEG 58
           + L  N I +       +   + LK L++SSNQ+    P     +  L  L L++     
Sbjct: 150 LLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGP 209

Query: 59  MFP--LSSLANHSKLEGLLLSTRNNTLHVKTENW---LPTSQLIVLGLTKCNLNGSYPDF 113
                L     ++ +  L LS  N+ L   +      L  + L +L L+  NLN    D 
Sbjct: 210 SLTEKLCLELANTSIRNLSLS--NSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDS 267

Query: 114 LLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGIL---QLPKAKHDF-- 168
                 L+Y  L +N +   F   L      +  L LK +     +    LPK       
Sbjct: 268 FAWLPQLEYFFLEYNNIQHLFSHSL-HGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQ 326

Query: 169 ----LHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAG----EMKELSL 220
               L HL++  N+  G +  NM   L  L Y+ +S +        +          L +
Sbjct: 327 WLKCLEHLNMEDNDIPG-IKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHI 385

Query: 221 LDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQF-FSEYMNLTRLRHLYFENNNFSG 279
           L+L++N  S  +     +    LE+LDL  N    +    E+  L  +  +Y   N +  
Sbjct: 386 LNLTKNKISK-IESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQ 444

Query: 280 KIKDGLLSSTSLQVLDISNNMLSG--HIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNL 337
             ++      SLQ L +    L      P       + L IL +S N++       L  L
Sbjct: 445 LTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRN-LTILDLSNNNIANINDDMLEGL 503

Query: 338 ERLRILDISENRLS---------GPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLV 388
           E+L ILD+  N L+         GPI     LS +  L+L+ N  + +         +L 
Sbjct: 504 EKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELK 563

Query: 389 TLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLC-QLQKLAMMDLSRNKFSG 447
            ++L  N  +       N   +L+ L L  N +            + L  +D+  N F  
Sbjct: 564 IIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDC 623

Query: 448 SIP 450
           +  
Sbjct: 624 TCE 626

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  199 bits (507), Expect = 8e-55
 Identities = 87/501 (17%), Positives = 166/501 (33%), Gaps = 41/501 (8%)

Query: 145 LEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCF 204
            EV    +   + +   P      +  L+++ N  R     N      +L  +D+  N  
Sbjct: 6   HEVADCSHLKLTQV---PDDLPTNITVLNLTHNQLRRLPAANFTR-YSQLTSLDVGFNTI 61

Query: 205 EGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNL 264
               P    ++  L +L+L  N  S  LS      C +L  L L +N+ +    + ++  
Sbjct: 62  SKLEPELCQKLPMLKVLNLQHNELSQ-LSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQ 120

Query: 265 TRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFS-SELEILSMSK 323
             L  L   +N  S       +   +LQ L +SNN +       +  F+ S L+ L +S 
Sbjct: 121 KNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSS 180

Query: 324 NHLEGNVPVQLNNLERLRILDISENRLSGPIASS----LNLSSVEHLSLQKNALNGLIPG 379
           N ++   P   + + RL  L ++  +L   +       L  +S+ +LSL  + L+     
Sbjct: 181 NQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNT 240

Query: 380 ELF--RSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAM 437
                +   L  L+L  N  +            L +  L  N++Q      L  L  +  
Sbjct: 241 TFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRY 300

Query: 438 MDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFG 497
           ++L R+    SI       +              L    L+       + +N        
Sbjct: 301 LNLKRSFTKQSISLASLPKID----DFSFQWLKCLE--HLN-------MEDNDIPGIKSN 347

Query: 498 MWRWLSALEK------RAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIP 551
           M+  L  L+         ++       F              + +  L+L+ N+++    
Sbjct: 348 MFTGLINLKYLSLSNSFTSLRTLTNETFV---------SLAHSPLHILNLTKNKISKIES 398

Query: 552 SDIGQLQAILALNLSNNSLSGSIP-ESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSI 610
                L  +  L+L  N +   +  + +  L+ I  + +SYNK           +  L  
Sbjct: 399 DAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQR 458

Query: 611 FNVSYNNLSGRTPDKGQFATF 631
             +    L         F   
Sbjct: 459 LMLRRVALKNVDSSPSPFQPL 479

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  164 bits (417), Expect = 9e-43
 Identities = 84/435 (19%), Positives = 138/435 (31%), Gaps = 73/435 (16%)

Query: 217 ELSLLDLSRNYFSGGLSQSVVTGCF-SLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENN 275
              + D S    +      V      ++ +L+L++N       + +   ++L  L    N
Sbjct: 5   SHEVADCSHLKLT-----QVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFN 59

Query: 276 NFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLN 335
             S    +       L+VL++ +N LS          ++ L  L +  N ++        
Sbjct: 60  TISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTN-LTELHLMSNSIQKIKNNPFV 118

Query: 336 NLERLRILDISENRLSGPIASSL-NLSSVEHLSLQKNALNGLIPGEL--FRSCKLVTLNL 392
             + L  LD+S N LS     +   L +++ L L  N +  L   EL  F +  L  L L
Sbjct: 119 KQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLEL 178

Query: 393 RDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLC---QLQKLAMMDLSRNKFSGSI 449
             N      P   +    L  L L    L   + ++LC       +  + LS ++ S + 
Sbjct: 179 SSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTS 238

Query: 450 PPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRA 509
              F             L  + L    LD       L  N  +      + WL  LE   
Sbjct: 239 NTTFLG-----------LKWTNLT--MLD-------LSYNNLNVVGNDSFAWLPQLEY-- 276

Query: 510 AIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNN- 568
                                          L  N +       +  L  +  LNL  + 
Sbjct: 277 -----------------------------FFLEYNNIQHLFSHSLHGLFNVRYLNLKRSF 307

Query: 569 --------SLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSG 620
                   SL      SF  LK +E L++  N + G      T L  L   ++S +  S 
Sbjct: 308 TKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSL 367

Query: 621 RTPDKGQFATFDESS 635
           RT     F +   S 
Sbjct: 368 RTLTNETFVSLAHSP 382

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  139 bits (352), Expect = 1e-34
 Identities = 72/343 (20%), Positives = 116/343 (33%), Gaps = 61/343 (17%)

Query: 288 STSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISE 347
           + S +V D S+  L+  +P    +  + + +L+++ N L            +L  LD+  
Sbjct: 3   TVSHEVADCSHLKLT-QVPD---DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGF 58

Query: 348 NRLSGPIASSL-NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQIN 406
           N +S         L  ++ L+LQ N L+ L          L  L+L  N+      +   
Sbjct: 59  NTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFV 118

Query: 407 EHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDV 466
           +  NL  L L  N L         QL+ L  + LS NK                      
Sbjct: 119 KQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDI----------- 167

Query: 467 LNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYE 526
              S L   +L+       L +N+           +                F       
Sbjct: 168 FANSSLK--KLE-------LSSNQ-----------IKEFSPGC---------FH------ 192

Query: 527 IYNGSNVNRVTGLDLSCNQLTGEIPSDIG---QLQAILALNLSNNSLSGSIPESFSNLKM 583
                 + R+ GL L+  QL   +   +       +I  L+LSN+ LS +   +F  LK 
Sbjct: 193 -----AIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKW 247

Query: 584 --IESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPD 624
             +  LD+SYN L          L  L  F + YNN+      
Sbjct: 248 TNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSH 290

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  120 bits (302), Expect = 2e-28
 Identities = 68/350 (19%), Positives = 126/350 (36%), Gaps = 41/350 (11%)

Query: 313 SSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSL-NLSSVEHLSLQKN 371
           +   E+   S   L   VP  L     + +L+++ N+L    A++    S +  L +  N
Sbjct: 3   TVSHEVADCSHLKLT-QVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFN 59

Query: 372 ALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQ 431
            ++ L P    +   L  LNL+ N  S          +NL  L L  N +Q    +   +
Sbjct: 60  TISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVK 119

Query: 432 LQKLAMMDLSRNKFSGSIPPCFANVLSWRV-------------GSDDVLNGSKLNSPELD 478
            + L  +DLS N  S +       + + +                 D+   S L   EL 
Sbjct: 120 QKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELS 179

Query: 479 ----EEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVN 534
               +E   G          +F     L+ ++   ++ E++ +E A  +           
Sbjct: 180 SNQIKEFSPGCFHAIGRLFGLF-----LNNVQLGPSLTEKLCLELANTS----------- 223

Query: 535 RVTGLDLSCNQLTGEIPSDIGQLQ--AILALNLSNNSLSGSIPESFSNLKMIESLDISYN 592
            +  L LS +QL+    +    L+   +  L+LS N+L+    +SF+ L  +E   + YN
Sbjct: 224 -IRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYN 282

Query: 593 KLTGQIPPQLTALNFLSIFNVSYNNLSGRTPDKGQFATFDESSYRGNPSL 642
            +       L  L  +   N+  +               D+ S++    L
Sbjct: 283 NIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLA-SLPKIDDFSFQWLKCL 331

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  218 bits (558), Expect = 4e-62
 Identities = 80/637 (12%), Positives = 184/637 (28%), Gaps = 125/637 (19%)

Query: 6   NFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSL 65
            +   P ++   +  R+  L +     +G +P  I  LT LE L L  +  +    L   
Sbjct: 68  MWGAQPGVSLN-SNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGP 126

Query: 66  ANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFL--LHQYHLKYL 123
              S                                 + +   ++ D+        L   
Sbjct: 127 KGISANMSDEQ----------------------KQKMRMHYQKTFVDYDPREDFSDLIKD 164

Query: 124 DLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGI----LQLPKAKHDFLHHLDISCNNF 179
            ++ +    +      R   K   +   +N+ + +    ++L K     L    +  + F
Sbjct: 165 CINSDPQQKSIKK-SSRITLKDTQIGQLSNNITFVSKAVMRLTK-----LRQFYMGNSPF 218

Query: 180 RGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTG 239
             +         +     +                +K+L+ +++        L   +   
Sbjct: 219 VAENI------CEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLK-A 271

Query: 240 CFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNN 299
              ++L++++ N                     E      +          +Q++ I  N
Sbjct: 272 LPEMQLINVACNRGIS----------------GEQLKDDWQALADAPVGEKIQIIYIGYN 315

Query: 300 ML-SGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSL 358
            L +  +   +      L +L    N LEG +P    +  +L  L+++ N+++   A+  
Sbjct: 316 NLKTFPVETSLQKMKK-LGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFC 373

Query: 359 -NLSSVEHLSLQKNALNGLIPGELFRSC-KLVTLNLRDNTFSG-------RIPHQINEHS 409
                VE+LS   N L  +      +S   +  ++   N            +     +  
Sbjct: 374 GFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGI 433

Query: 410 NLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNG 469
           N+  + L  N +     +       L+ ++L  N  +        +       +++  N 
Sbjct: 434 NVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDE------NENFKNT 487

Query: 470 SKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYN 529
             L    +D       L  N+           L+ L          +             
Sbjct: 488 YLLT--SID-------LRFNK-----------LTKLSD--------DFRA---------- 509

Query: 530 GSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSN------NSLSGSIPESFSNLKM 583
            + +  + G+DLS N  +   P+       +    + N      N      PE  +    
Sbjct: 510 -TTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPS 567

Query: 584 IESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSG 620
           +  L I  N +   +  ++     +S+ ++  N    
Sbjct: 568 LTQLQIGSNDIRK-VNEKI--TPNISVLDIKDNPNIS 601

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  196 bits (500), Expect = 4e-54
 Identities = 64/490 (13%), Positives = 146/490 (29%), Gaps = 48/490 (9%)

Query: 2   NLERNFIGSPLITCLKNLTRLKILDISSNQLNG----SLPSVISNLTSLEYLDLSHNNFE 57
           +LE       +   +  LT L++L + S+          P  IS   S E       +++
Sbjct: 87  SLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQ 146

Query: 58  GMFP-LSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLH 116
             F       + S L    +++      +K  + +       +G    N+       ++ 
Sbjct: 147 KTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLK-DTQIGQLSNNI-TFVSKAVMR 204

Query: 117 QYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISC 176
              L+   + ++  V         N         +         L       L  +++  
Sbjct: 205 LTKLRQFYMGNSPFVAENICEAWEN------ENSEYAQQYKTEDLKWDNLKDLTDVEVYN 258

Query: 177 NNFRGKLPHNMGVILQKLMYMDISKNCF--------EGNIPYSAGEMKELSLLDLSRNYF 228
                KLP  +   L ++  ++++ N          +      A   +++ ++ +  N  
Sbjct: 259 CPNLTKLPTFLKA-LPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNL 317

Query: 229 SGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSS 288
                ++ +     L +L+   N  EG     + +  +L  L    N  +    +    +
Sbjct: 318 KTFPVETSLQKMKKLGMLECLYNQLEG-KLPAFGSEIKLASLNLAYNQITEIPANFCGFT 376

Query: 289 TSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEG-------NVPVQLNNLERLR 341
             ++ L  ++N L      +     S +  +  S N +          +         + 
Sbjct: 377 EQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVS 436

Query: 342 ILDISENRLSGPIASSL-NLSSVEHLSLQKNALNGL-------IPGELFRSCKLVTLNLR 393
            +++S N++S          S +  ++L  N L  +              +  L +++LR
Sbjct: 437 SINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLR 496

Query: 394 DNTFSGRIPHQINEHS--NLRFLLLGGNHLQGPIPDQLCQLQKLAMM------DLSRNKF 445
            N  +  +       +   L  + L  N      P Q      L         D   N+ 
Sbjct: 497 FNKLTK-LSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRT 554

Query: 446 SGSIPPCFAN 455
               P     
Sbjct: 555 LREWPEGITL 564

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  170 bits (434), Expect = 3e-45
 Identities = 65/462 (14%), Positives = 136/462 (29%), Gaps = 65/462 (14%)

Query: 2   NLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFP 61
            L + ++G+            +  +    Q   +      NL  L  +++ +       P
Sbjct: 207 KLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLP 266

Query: 62  LSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLK 121
            + L    +++ + ++   N                 +   +   +            ++
Sbjct: 267 -TFLKALPEMQLINVA--CNRG---------------ISGEQLKDDWQALADAPVGEKIQ 308

Query: 122 YLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGIL----QLPKAKHDFLHHLDISCN 177
            + + +N L        L+   KL +L    N   G L       K     L  L+++ N
Sbjct: 309 IIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIK-----LASLNLAYN 363

Query: 178 NFRGKLPHNMGVILQKLMYMDISKNCFEGNIP--YSAGEMKELSLLDLSRNYFSGGLSQS 235
                +P N     +++  +  + N  +  IP  + A  +  +S +D S N       ++
Sbjct: 364 QITE-IPANFCGFTEQVENLSFAHNKLKY-IPNIFDAKSVSVMSAIDFSYNEIGSVDGKN 421

Query: 236 VVT------GCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSG-------KIK 282
                       ++  ++LSNN         +   + L  +    N  +           
Sbjct: 422 FDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDEN 481

Query: 283 DGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRI 342
           +   ++  L  +D+  N L+     +       L  + +S N      P Q  N   L+ 
Sbjct: 482 ENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKG 540

Query: 343 LDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIP 402
             I   R                   Q N      P  +     L  L +  N     + 
Sbjct: 541 FGIRNQRD-----------------AQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-VN 582

Query: 403 HQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNK 444
            +I    N+  L +  N         +C   +  M  L  +K
Sbjct: 583 EKI--TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDK 622

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 76.2 bits (188), Expect = 2e-14
 Identities = 25/225 (11%), Positives = 57/225 (25%), Gaps = 37/225 (16%)

Query: 404 QINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSG----SIPPCFANVLSW 459
            +N +  +  L L G    G +PD + QL +L ++ L  +          P   +  +S 
Sbjct: 76  SLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSD 135

Query: 460 RVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEF 519
                  ++  K        E     + +  +S+                          
Sbjct: 136 EQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQK---------------------- 173

Query: 520 AMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFS 579
               +          +   +    N +T  +   + +L  +    + N+           
Sbjct: 174 --SIKKSSRITLKDTQ---IGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAW 227

Query: 580 NLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPD 624
                   +  Y +       +   L  L+   V       + P 
Sbjct: 228 EN-----ENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPT 267

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 55.8 bits (135), Expect = 4e-08
 Identities = 12/96 (12%), Positives = 27/96 (28%), Gaps = 4/96 (4%)

Query: 540 DLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQ-- 597
           +   +    +    +     +  L+L     SG +P++   L  +E L +  +       
Sbjct: 63  NKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNER 122

Query: 598 --IPPQLTALNFLSIFNVSYNNLSGRTPDKGQFATF 631
              P  ++A            +      D      F
Sbjct: 123 LFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDF 158

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 49.7 bits (119), Expect = 3e-06
 Identities = 13/82 (15%), Positives = 25/82 (30%), Gaps = 4/82 (4%)

Query: 1   MNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMF 60
            + + N         +     L  L I SN +   +   I    ++  LD+  N      
Sbjct: 547 RDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKI--TPNISVLDIKDNPNIS-I 602

Query: 61  PLSSLANHSKLEGLLLSTRNNT 82
            LS +  + +    +L      
Sbjct: 603 DLSYVCPYIEAGMYMLFYDKTQ 624

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  216 bits (552), Expect = 1e-61
 Identities = 112/616 (18%), Positives = 207/616 (33%), Gaps = 101/616 (16%)

Query: 20  TRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTR 79
              K LD+S N L         +   L+ LDLS    + +    +  + S L  L+L+  
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED-GAYQSLSHLSTLILT-- 84

Query: 80  NNTLHVKTENWL-PTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWL 138
            N +           S L  L   + NL       + H   LK L+++HN +        
Sbjct: 85  GNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY 144

Query: 139 LRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMD 198
             N   LE L L +N    I          LH + +                    + +D
Sbjct: 145 FSNLTNLEHLDLSSNKIQSI---YCTDLRVLHQMPLL------------------NLSLD 183

Query: 199 ISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQF- 257
           +S N      P  A +   L  L L  N+ S  + ++ + G   LE+  L    F  +  
Sbjct: 184 LSLNPMNFIQP-GAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGN 242

Query: 258 --FSEYMNLTRLRHLYFENNNFS------GKIKDGLLSSTSLQVLDISNNMLSGHIPHWM 309
               +   L  L +L  E    +        I D     T++    + +  +        
Sbjct: 243 LEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD--- 299

Query: 310 GNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQ 369
            +++   + L +          ++L +L+RL               S ++L S+E L L 
Sbjct: 300 FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAF----SEVDLPSLEFLDLS 355

Query: 370 KNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQL 429
           +N L+                      F G         ++L++L L  N +   +    
Sbjct: 356 RNGLS----------------------FKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNF 392

Query: 430 CQLQKLAMMDLSRNKFSGSIPP-CFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGN 488
             L++L  +D   +          F ++ +                  LD       + +
Sbjct: 393 LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY---------------LD-------ISH 430

Query: 489 NRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNG---SNVNRVTGLDLSCNQ 545
             +     G++  LS+LE          ++ A  +  E +     + +  +T LDLS  Q
Sbjct: 431 THTRVAFNGIFNGLSSLE---------VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 481

Query: 546 LTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTAL 605
           L    P+    L ++  LN+S+N+        +  L  ++ LD S N +      +L   
Sbjct: 482 LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF 541

Query: 606 -NFLSIFNVSYNNLSG 620
            + L+  N++ N+ + 
Sbjct: 542 PSSLAFLNLTQNDFAC 557

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  214 bits (547), Expect = 8e-61
 Identities = 94/475 (19%), Positives = 156/475 (32%), Gaps = 31/475 (6%)

Query: 2   NLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFP 61
            L  N I S  +     L+ L+ L      L       I +L +L+ L+++HN  +    
Sbjct: 82  ILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKL 141

Query: 62  LSSLANHSKLEGLLLSTRNNTLHVKTENWLP-----TSQLIVLGLTKCNLNGSYPDFLLH 116
               +N + LE L LS  +N +       L          + L L+   +N         
Sbjct: 142 PEYFSNLTNLEHLDLS--SNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFK 198

Query: 117 QYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFL------- 169
           +  L  L L +N    N     ++    LEV  L    F     L K     L       
Sbjct: 199 EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLT 258

Query: 170 -HHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYF 228
                ++  ++      ++   L  +    +     E    +S         L+L    F
Sbjct: 259 IEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFS--YNFGWQHLELVNCKF 316

Query: 229 SGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENN--NFSGKIKDGLL 286
                           L  L+  + +G      ++L  L  L    N  +F G       
Sbjct: 317 GQ------FPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDF 370

Query: 287 SSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQ-LNNLERLRILDI 345
            +TSL+ LD+S N +     +++G    +LE L    ++L+         +L  L  LDI
Sbjct: 371 GTTSLKYLDLSFNGVITMSSNFLG--LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 428

Query: 346 SENRLSGPIASSL-NLSSVEHLSLQKNALNGLIPGELFRSC-KLVTLNLRDNTFSGRIPH 403
           S              LSS+E L +  N+       ++F     L  L+L         P 
Sbjct: 429 SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT 488

Query: 404 QINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLS 458
             N  S+L+ L +  N+           L  L ++D S N    S      +  S
Sbjct: 489 AFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPS 543

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  190 bits (484), Expect = 4e-52
 Identities = 91/465 (19%), Positives = 158/465 (33%), Gaps = 50/465 (10%)

Query: 2   NLERNFI-GSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEY----LDLSHNNF 56
           N+  N I    L     NLT L+ LD+SSN++     + +  L  +      LDLS N  
Sbjct: 130 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM 189

Query: 57  EGMFPLSSLANHSKLEGLLLSTRNNTLHV--KTENWLPTSQLIVLGLTKCNLNGSYPDFL 114
             + P +      +L  L L    ++L+V       L   ++  L L +    G+   F 
Sbjct: 190 NFIQPGAF--KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFD 247

Query: 115 ------LHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDF 168
                 L    ++   L++     +    L      +    L + +   +     + +  
Sbjct: 248 KSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDF--SYNFG 305

Query: 169 LHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYF 228
             HL++    F G+ P      L++L +         G   +S  ++  L  LDLSRN  
Sbjct: 306 WQHLELVNCKF-GQFPTLKLKSLKRLTFTSNK-----GGNAFSEVDLPSLEFLDLSRN-- 357

Query: 229 SGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSS 288
                                  +F+G         T L++L    N     +    L  
Sbjct: 358 ---------------------GLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGL 395

Query: 289 TSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISEN 348
             L+ LD  ++ L       +      L  L +S  H         N L  L +L ++ N
Sbjct: 396 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN 455

Query: 349 RLSGPIASSL--NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQIN 406
                    +   L ++  L L +  L  L P        L  LN+  N F         
Sbjct: 456 SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYK 515

Query: 407 EHSNLRFLLLGGNHLQGPIPDQLCQL-QKLAMMDLSRNKFSGSIP 450
             ++L+ L    NH+      +L      LA ++L++N F+ +  
Sbjct: 516 CLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 560

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  176 bits (448), Expect = 3e-47
 Identities = 85/497 (17%), Positives = 154/497 (30%), Gaps = 45/497 (9%)

Query: 152 NNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYS 211
                   ++P        +LD+S N  R    ++      +L  +D+S+   +     +
Sbjct: 13  QCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFS-FPELQVLDLSRCEIQTIEDGA 71

Query: 212 AGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLY 271
              +  LS L L+ N     L+    +G  SL+ L     N          +L  L+ L 
Sbjct: 72  YQSLSHLSTLILTGNPIQS-LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELN 130

Query: 272 FENNNF-SGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSS---ELEILSMSKNHLE 327
             +N   S K+ +   + T+L+ LD+S+N +       +            L +S N + 
Sbjct: 131 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN 190

Query: 328 GNVPVQLNNLERLRILDISENRLSGPIASSL--NLSSVEHLSLQKNALNG------LIPG 379
              P     + RL  L +  N  S  +  +    L+ +E   L                 
Sbjct: 191 FIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKS 249

Query: 380 ELFRSCKLVTLNLRDNT---FSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQ-LCQLQKL 435
            L   C L     R      +   I    N  +N+    L    ++           Q L
Sbjct: 250 ALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHL 309

Query: 436 AMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTM 495
              +L   KF         ++      S     G    S      +EF  L  N  S   
Sbjct: 310 ---ELVNCKFGQFPTLKLKSLKRLTFTS---NKGGNAFSEVDLPSLEFLDLSRNGLSFKG 363

Query: 496 FGMWRWLSALEKRAAID------ERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGE 549
               +          +D        +   F             + ++  LD   + L   
Sbjct: 364 CCS-QSDFGTTSLKYLDLSFNGVITMSSNF-----------LGLEQLEHLDFQHSNLKQM 411

Query: 550 IPSDI-GQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQ-LTALNF 607
               +   L+ ++ L++S+     +    F+ L  +E L ++ N       P   T L  
Sbjct: 412 SEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN 471

Query: 608 LSIFNVSYNNLSGRTPD 624
           L+  ++S   L   +P 
Sbjct: 472 LTFLDLSQCQLEQLSPT 488

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  168 bits (428), Expect = 1e-44
 Identities = 79/373 (21%), Positives = 135/373 (36%), Gaps = 24/373 (6%)

Query: 6   NFIGSPLITCLKNLTRLKILDISSNQLNGS---LPSVISNLTSLEYLDLSHNNFEGMFPL 62
             +     + L+ L  L I +     L+     +  + + LT++    L     E +   
Sbjct: 241 GNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDF 300

Query: 63  SSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKY 122
           S    +   + L L   N          L + +     LT  +  G      +    L++
Sbjct: 301 S---YNFGWQHLELV--NCKFGQFPTLKLKSLKR----LTFTSNKGGNAFSEVDLPSLEF 351

Query: 123 LDLSHNKLVG-NFPTWLLRNNPKLEVLLLKNNSFSGI----LQLPKAKHDFLHHLDISCN 177
           LDLS N L      +        L+ L L  N    +    L L +     L HLD   +
Sbjct: 352 LDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQ-----LEHLDFQHS 406

Query: 178 NFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVV 237
           N +     ++ + L+ L+Y+DIS              +  L +L ++ N F       + 
Sbjct: 407 NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF 466

Query: 238 TGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDIS 297
           T   +L  LDLS    E    + + +L+ L+ L   +NNF            SLQVLD S
Sbjct: 467 TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYS 526

Query: 298 NNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQ--LNNLERLRILDISENRLSGPIA 355
            N +       + +F S L  L++++N        Q  L  ++  R L +   R+     
Sbjct: 527 LNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATP 586

Query: 356 SSLNLSSVEHLSL 368
           S      V  L++
Sbjct: 587 SDKQGMPVLSLNI 599

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 57.3 bits (139), Expect = 1e-08
 Identities = 21/118 (17%), Positives = 41/118 (34%), Gaps = 9/118 (7%)

Query: 2   NLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFP 61
           +L +  +     T   +L+ L++L++S N            L SL+ LD S N+      
Sbjct: 476 DLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK 535

Query: 62  LSSLANHSKLEGLLLSTRNNTLH-----VKTENWLPTSQLIVLGLTKCNLNGSYPDFL 114
                  S L  L L+   N             W+   + +++ +    +  + P   
Sbjct: 536 QELQHFPSSLAFLNLT--QNDFACTCEHQSFLQWIKDQRQLLVEVE--RMECATPSDK 589

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  206 bits (525), Expect = 8e-58
 Identities = 105/614 (17%), Positives = 197/614 (32%), Gaps = 105/614 (17%)

Query: 22  LKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNN 81
            K +D+S N L        SN + L++LDLS    E +    +      L  L+L+   N
Sbjct: 34  TKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIED-KAWHGLHHLSNLILT--GN 90

Query: 82  TLHVKTENWL-PTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLR 140
            +   +       + L  L   +  L       +     LK L+++HN +          
Sbjct: 91  PIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFS 150

Query: 141 NNPKLEVLLLKNNSFSGI----LQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMY 196
           N   L  + L  N    I    LQ  +        LD+S N                   
Sbjct: 151 NLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDF--------------- 195

Query: 197 MDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQ 256
             I    F+G          +L  L L  N+ S  + ++ +     L +  L    F+ +
Sbjct: 196 --IQDQAFQGI---------KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDE 244

Query: 257 FFSEYMNLT--------RLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHW 308
              E    +         +        N             ++  + ++   +  ++   
Sbjct: 245 RNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIK-YLED- 302

Query: 309 MGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSL 368
                 + + LS+ +  L+    + L  L+ L    ++ N+ S      + L S+ +L L
Sbjct: 303 -VPKHFKWQSLSIIRCQLKQFPTLDLPFLKSL---TLTMNKGSISF-KKVALPSLSYLDL 357

Query: 369 QKNALNGLIPG--ELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIP 426
            +NAL+           +  L  L+L  N     +         L+ L    + L+    
Sbjct: 358 SRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTE 416

Query: 427 -DQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGS 485
                 L+KL  +D+S           F  +             + LN+ ++        
Sbjct: 417 FSAFLSLEKLLYLDISYTNTKIDFDGIFLGL-------------TSLNTLKMA------- 456

Query: 486 LGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQ 545
            GN+   NT+  ++   + L                                 LDLS  Q
Sbjct: 457 -GNSFKDNTLSNVFANTTNLTF-------------------------------LDLSKCQ 484

Query: 546 LTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTAL 605
           L          L  +  LN+S+N+L       ++ L  + +LD S+N++           
Sbjct: 485 LEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFP 544

Query: 606 NFLSIFNVSYNNLS 619
             L+ FN++ N+++
Sbjct: 545 KSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  191 bits (486), Expect = 2e-52
 Identities = 90/474 (18%), Positives = 145/474 (30%), Gaps = 30/474 (6%)

Query: 2   NLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFP 61
            L  N I S        LT L+ L     +L       I  L +L+ L+++HN       
Sbjct: 86  ILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKL 145

Query: 62  LSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNG----SYPDFLLHQ 117
            +  +N + L  + LS   N +   T N L   +         +++        D     
Sbjct: 146 PAYFSNLTNLVHVDLS--YNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQG 203

Query: 118 YHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLH------- 170
             L  L L  N    N     L+N   L V  L    F     L   +   +        
Sbjct: 204 IKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTI 263

Query: 171 -HLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFS 229
               ++  N            L  +  M ++             +  +   L + R    
Sbjct: 264 DEFRLTYTNDFSDDIVKFHC-LANVSAMSLAGVSI--KYLEDVPKHFKWQSLSIIRC--- 317

Query: 230 GGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKD--GLLS 287
             L Q        L+ L L+ N   G    + + L  L +L    N  S         L 
Sbjct: 318 -QLKQFPTLDLPFLKSLTLTMNK--GSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLG 374

Query: 288 STSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQ-LNNLERLRILDIS 346
           + SL+ LD+S N     +          L+ L    + L+         +LE+L  LDIS
Sbjct: 375 TNSLRHLDLSFNGAI-IMSANFMGLEE-LQHLDFQHSTLKRVTEFSAFLSLEKLLYLDIS 432

Query: 347 ENRLSGPIASSL-NLSSVEHLSLQKNALNGLIPGELFRSC-KLVTLNLRDNTFSGRIPHQ 404
                         L+S+  L +  N+        +F +   L  L+L            
Sbjct: 433 YTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGV 492

Query: 405 INEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLS 458
            +    L+ L +  N+L         QL  L+ +D S N+   S         S
Sbjct: 493 FDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKS 546

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  166 bits (423), Expect = 6e-44
 Identities = 83/412 (20%), Positives = 141/412 (34%), Gaps = 27/412 (6%)

Query: 2   NLERNFIGSPLITCLKNLTRLKI----LDISSNQLNGSLPSVISNLTSLEYLDLSHNNFE 57
           +L  N+I +  +  L+ L         LD+S N ++  +         L  L L  N   
Sbjct: 159 DLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQGIKLHELTLRGNFNS 217

Query: 58  GMFPLSSLANHSKLEGLLLS-------TRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSY 110
                + L N + L    L                     L    +    LT  N     
Sbjct: 218 SNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDD 277

Query: 111 PDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLH 170
                   ++  + L+   +        +  + K + L +         Q P     FL 
Sbjct: 278 IVKFHCLANVSAMSLAGVSIKYLED---VPKHFKWQSLSIIRCQLK---QFPTLDLPFLK 331

Query: 171 HLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSL--LDLSRNYF 228
            L ++ N           V L  L Y+D+S+N    +   S  ++   SL  LDLS N  
Sbjct: 332 SLTLTMNKGSISFK---KVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGA 388

Query: 229 SGGLSQSVVTGCFSLELLDLSNNNFEG-QFFSEYMNLTRLRHLYFENNNFSGKIKDGLLS 287
              +  +   G   L+ LD  ++  +    FS +++L +L +L     N         L 
Sbjct: 389 I--IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLG 446

Query: 288 STSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISE 347
            TSL  L ++ N    +    +   ++ L  L +SK  LE       + L RL++L++S 
Sbjct: 447 LTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSH 506

Query: 348 NRLSGPIASSL-NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFS 398
           N L    +S    L S+  L    N +             L   NL +N+ +
Sbjct: 507 NNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  155 bits (394), Expect = 3e-40
 Identities = 91/527 (17%), Positives = 177/527 (33%), Gaps = 65/527 (12%)

Query: 119 HLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGI-----LQLPKAKHDFLHHLD 173
             K +DLS N L     ++   N  +L+ L L       I       L       L +L 
Sbjct: 33  STKNIDLSFNPLKI-LKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHH-----LSNLI 86

Query: 174 ISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLS 233
           ++ N  +          L  L  +   +        +  G++  L  L+++ N+      
Sbjct: 87  LTGNPIQS-FSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKL 145

Query: 234 QSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFE---NNNFSGKIKDGLLSSTS 290
            +  +   +L  +DLS N  +    ++   L     +      + N    I+D       
Sbjct: 146 PAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIK 205

Query: 291 LQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQ------LNNLERLRI-- 342
           L  L +  N  S +I        + L +  +     +    ++      +  L  + I  
Sbjct: 206 LHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDE 265

Query: 343 LDISENRLSGPIASSL-NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRI 401
             ++              L++V  +SL   ++  L   ++ +  K  +L++         
Sbjct: 266 FRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYL--EDVPKHFKWQSLSIIRCQLKQFP 323

Query: 402 PHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRV 461
              +     L+ L L  N     I  +   L  L+ +DLSRN  S S    +++      
Sbjct: 324 TLDL---PFLKSLTLTMNKGS--ISFKKVALPSLSYLDLSRNALSFSGCCSYSD------ 372

Query: 462 GSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFA- 520
                L  + L    LD       L  N +   M   +  L  L+          ++F  
Sbjct: 373 -----LGTNSLR--HLD-------LSFNGAI-IMSANFMGLEELQ---------HLDFQH 408

Query: 521 --MKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPES- 577
             +K   E     ++ ++  LD+S      +       L ++  L ++ NS   +   + 
Sbjct: 409 STLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNV 468

Query: 578 FSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPD 624
           F+N   +  LD+S  +L          L+ L + N+S+NNL      
Sbjct: 469 FANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSS 515

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 98.2 bits (245), Expect = 2e-21
 Identities = 50/338 (14%), Positives = 100/338 (29%), Gaps = 41/338 (12%)

Query: 293 VLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSG 352
                +  LS  +P    +  S  + + +S N L+       +N   L+ LD+S   +  
Sbjct: 15  TYQCMDQKLS-KVPD---DIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIET 70

Query: 353 PIASSL-NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNL 411
               +   L  + +L L  N +    PG       L  L   +   +      I +   L
Sbjct: 71  IEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITL 130

Query: 412 RFLLLGGNHLQG-PIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGS 470
           + L +  N +    +P     L  L  +DLS N             L      +  L+ S
Sbjct: 131 KKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQF-LRENPQVNLSLDMS 189

Query: 471 KLNSPELDEEIEFGSL--------GNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMK 522
                 + ++  F  +        GN  SSN M    + L+ L                 
Sbjct: 190 LNPIDFIQDQA-FQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHV--------------- 233

Query: 523 NRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLK 582
           +R  +    +   +   + S  +   ++         I    L+  +        F  L 
Sbjct: 234 HRLILGEFKDERNLEIFEPSIMEGLCDVT--------IDEFRLTYTNDFSDDIVKFHCLA 285

Query: 583 MIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSG 620
            + ++ ++   +       +         ++    L  
Sbjct: 286 NVSAMSLAGVSIKY--LEDVPKHFKWQSLSIIRCQLKQ 321

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 67.7 bits (166), Expect = 6e-12
 Identities = 43/241 (17%), Positives = 73/241 (30%), Gaps = 61/241 (25%)

Query: 384 SCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRN 443
               +T    D   S ++P  I   S+ + + L  N L+           +L  +DLSR 
Sbjct: 10  VVPNITYQCMDQKLS-KVPDDI--PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRC 66

Query: 444 KFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLS 503
           +        +  +               L             L  N   +   G +  L+
Sbjct: 67  EIETIEDKAWHGLHHLSN----------LI------------LTGNPIQSFSPGSFSGLT 104

Query: 504 ALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILAL 563
           +LE                                L     +L       IGQL  +  L
Sbjct: 105 SLEN-------------------------------LVAVETKLASLESFPIGQLITLKKL 133

Query: 564 NLSNNSLSG-SIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIF----NVSYNNL 618
           N+++N +    +P  FSNL  +  +D+SYN +       L  L          ++S N +
Sbjct: 134 NVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPI 193

Query: 619 S 619
            
Sbjct: 194 D 194

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  204 bits (522), Expect = 2e-57
 Identities = 114/611 (18%), Positives = 201/611 (32%), Gaps = 96/611 (15%)

Query: 22  LKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNN 81
            + L+ S N L     +  S L +L +LDL+      +    +  +  +L+ L+L+   N
Sbjct: 35  TECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHE-DTFQSQHRLDTLVLT--AN 91

Query: 82  TLHVKTENWL-PTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLR 140
            L    E  L     L  L   +  ++      L +Q  L+ L L  N +  +       
Sbjct: 92  PLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHIS-SIKLPKGF 150

Query: 141 NNPKLEVLLLKNNSFSGILQLPKAKHDF--LHHLDISCNNFRGKLPHNMGVILQKLMYMD 198
              KL+VL  +NN+   +     +K D   L                         + ++
Sbjct: 151 PTEKLKVLDFQNNAIHYL-----SKEDMSSLQQA--------------------TNLSLN 185

Query: 199 ISKNCFEGNIPYSAGEMKELSLLDLSRNYFSG----GLSQSVVTGCFSLELLDLSNNNFE 254
           ++ N   G I   A +      L+            GL  S +   +     D+ + +  
Sbjct: 186 LNGNDIAG-IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDIS 244

Query: 255 GQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSS 314
              F     ++ +  +  + + F     +     + LQ LD++   LS  +P  +   S+
Sbjct: 245 PAVFEGLCEMS-VESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLST 302

Query: 315 ELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSL--NLSSVEHLSLQKNA 372
            L+ L +S N  E    +  +N   L  L I  N     + +    NL ++  L L  + 
Sbjct: 303 -LKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDD 361

Query: 373 LN--GLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPD-QL 429
           +        +L     L +LNL  N           E   L  L L    L+        
Sbjct: 362 IETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPF 421

Query: 430 CQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNN 489
             L  L +++LS +    S    F  +               L    L+       L  N
Sbjct: 422 QNLHLLKVLNLSHSLLDISSEQLFDGL-------------PALQ--HLN-------LQGN 459

Query: 490 RSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGE 549
                       L  L                             R+  L LS   L+  
Sbjct: 460 HFPKGNIQKTNSLQTLG----------------------------RLEILVLSFCDLSSI 491

Query: 550 IPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLS 609
                  L+ +  ++LS+N L+ S  E+ S+LK I  L+++ N ++  +P  L  L+   
Sbjct: 492 DQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHISIILPSLLPILSQQR 550

Query: 610 IFNVSYNNLSG 620
             N+  N L  
Sbjct: 551 TINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  201 bits (513), Expect = 4e-56
 Identities = 80/456 (17%), Positives = 147/456 (32%), Gaps = 13/456 (2%)

Query: 2   NLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFP 61
              +  I S     L N   L+ L + SN ++            L+ LD  +N       
Sbjct: 111 FFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHY-LS 169

Query: 62  LSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFL--LHQYH 119
              +++  +   L L+   N +         ++    L              L       
Sbjct: 170 KEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQS 229

Query: 120 LKYLDLSHNKLVGNFPTWLLRN-NPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNN 178
           L              P          +E + L+ + F  I          L  LD++  +
Sbjct: 230 LWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATH 289

Query: 179 FRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVT 238
              +LP  +   L  L  + +S N FE     SA     L+ L +  N     L    + 
Sbjct: 290 LS-ELPSGLVG-LSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLE 347

Query: 239 GCFSLELLDLSNNNFEGQFFSEYM--NLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDI 296
              +L  LDLS+++ E          NL+ L+ L    N       +       L++LD+
Sbjct: 348 NLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDL 407

Query: 297 SNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIAS 356
           +   L              L++L++S + L+ +     + L  L+ L++  N        
Sbjct: 408 AFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQ 467

Query: 357 SL----NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLR 412
                  L  +E L L    L+ +          +  ++L  N  +     +   H    
Sbjct: 468 KTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTS-SSIEALSHLKGI 526

Query: 413 FLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGS 448
           +L L  NH+   +P  L  L +   ++L +N    +
Sbjct: 527 YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCT 562

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  194 bits (496), Expect = 9e-54
 Identities = 112/613 (18%), Positives = 200/613 (32%), Gaps = 97/613 (15%)

Query: 23  KILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNT 82
           K  +  +  LN  +P  + N  S E L+ S N    +   ++ +    L           
Sbjct: 15  KTYNCENLGLN-EIPGTLPN--STECLEFSFNVLPTIQN-TTFSRLINLT---------- 60

Query: 83  LHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNN 142
                           L LT+C +   + D    Q+ L  L L+ N L+       L   
Sbjct: 61  ---------------FLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIF-MAETALSGP 104

Query: 143 PKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKN 202
             L+ L       S I  +P      L  L +  N+    +    G   +KL  +D   N
Sbjct: 105 KALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISS-IKLPKGFPTEKLKVLDFQNN 163

Query: 203 CFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYM 262
                       +++ + L L+ N       +         + L+          F    
Sbjct: 164 AIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLK 223

Query: 263 N--LTRLRHLYFENNNFSGKIKD--GLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEI 318
           N  +  L    FE+ +           L   S++ +++  +       +    FS  L+ 
Sbjct: 224 NSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSG-LQE 282

Query: 319 LSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSL-NLSSVEHLSLQKNALNGLI 377
           L ++  HL   +P  L  L  L+ L +S N+       S  N  S+ HLS++ N     +
Sbjct: 283 LDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLEL 341

Query: 378 PGELFRSC-KLVTLNLRDN--TFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQK 434
                 +   L  L+L  +    S     Q+   S+L+ L L  N       +   +  +
Sbjct: 342 GTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQ 401

Query: 435 LAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNT 494
           L ++DL+  +            L              L    L+       L ++    +
Sbjct: 402 LELLDLAFTRLKVKDAQSPFQNLH------------LLK--VLN-------LSHSLLDIS 440

Query: 495 MFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDI 554
              ++  L AL+                                L+L  N          
Sbjct: 441 SEQLFDGLPALQH-------------------------------LNLQGNHFPKGNIQKT 469

Query: 555 GQLQ---AILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIF 611
             LQ    +  L LS   LS     +F++LKM+  +D+S+N+LT      L+ L  + + 
Sbjct: 470 NSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYL- 528

Query: 612 NVSYNNLSGRTPD 624
           N++ N++S   P 
Sbjct: 529 NLASNHISIILPS 541

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  149 bits (379), Expect = 3e-38
 Identities = 69/394 (17%), Positives = 123/394 (31%), Gaps = 60/394 (15%)

Query: 242 SLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNML 301
           S E L+ S N       + +  L  L  L           +D   S   L  L ++ N L
Sbjct: 34  STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPL 93

Query: 302 SGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSL-NL 360
                  +    + L+ L   +  +     + L+N + L  L +  N +S          
Sbjct: 94  IFMAETALSGPKA-LKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPT 152

Query: 361 SSVEHLSLQKNALNGLIPGEL--FRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGG 418
             ++ L  Q NA++ L   ++   +    ++LNL  N  +G I     + +  + L  GG
Sbjct: 153 EKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAG-IEPGAFDSAVFQSLNFGG 211

Query: 419 NHLQGPIPDQL--CQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPE 476
                 I   L    +Q L +            P  F                 +++   
Sbjct: 212 TQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFE-------------GLCEMSVES 258

Query: 477 LDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRV 536
           ++       L  +   N     +   S L++                             
Sbjct: 259 IN-------LQKHYFFNISSNTFHCFSGLQE----------------------------- 282

Query: 537 TGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTG 596
             LDL+   L+ E+PS +  L  +  L LS N        S SN   +  L I  N    
Sbjct: 283 --LDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRL 339

Query: 597 QIPPQ-LTALNFLSIFNVSYNNLSGRTPDKGQFA 629
           ++    L  L  L   ++S++++        Q  
Sbjct: 340 ELGTGCLENLENLRELDLSHDDIETSDCCNLQLR 373

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 80.4 bits (199), Expect = 7e-16
 Identities = 49/297 (16%), Positives = 80/297 (26%), Gaps = 58/297 (19%)

Query: 341 RILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGR 400
           +  +     L+  I  +L  +S E L    N L  +      R   L  L+L        
Sbjct: 15  KTYNCENLGLNE-IPGTL-PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWI 72

Query: 401 IPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWR 460
                     L  L+L  N L       L   + L  +   +   S        N     
Sbjct: 73  HEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQ---- 128

Query: 461 VGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFA 520
                      L S  L        LG+N  S+           L+              
Sbjct: 129 ---------KTLES--LY-------LGSNHISSIKLPKGFPTEKLKV------------- 157

Query: 521 MKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQA--ILALNLSNNSLSGSIPESF 578
                             LD   N +      D+  LQ    L+LNL+ N ++  I    
Sbjct: 158 ------------------LDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA-GIEPGA 198

Query: 579 SNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPDKGQFATFDESS 635
            +  + +SL+    +    I   L      S++  ++ ++         F    E S
Sbjct: 199 FDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMS 255

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 59.3 bits (144), Expect = 3e-09
 Identities = 18/118 (15%), Positives = 43/118 (36%), Gaps = 2/118 (1%)

Query: 531 SNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDIS 590
           S    +  L      ++      +   + + +L L +N +S          + ++ LD  
Sbjct: 102 SGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQ 161

Query: 591 YNKLTGQIPPQLTALNFLSI--FNVSYNNLSGRTPDKGQFATFDESSYRGNPSLCAWL 646
            N +       +++L   +    N++ N+++G  P     A F   ++ G  +L    
Sbjct: 162 NNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIF 219

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  204 bits (521), Expect = 8e-56
 Identities = 86/638 (13%), Positives = 182/638 (28%), Gaps = 96/638 (15%)

Query: 1   MNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMF 60
            N E +  G      L N  R+  L ++     G +P  I  LT L+ L    ++     
Sbjct: 304 FNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSG 363

Query: 61  PLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHL 120
            L         +          +H K        +L +  L +  +N +     + +   
Sbjct: 364 RLFGD-EELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSR 422

Query: 121 KYLDLSHNKLVGNFPTWL---LRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCN 177
             L  +    + N  T++   ++   KL+++   N+ F+                +    
Sbjct: 423 ISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYD-----NIAVDWEDANSDYA 477

Query: 178 NFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQ--- 234
                   +    L+ L  +++        +P    ++ EL  L+++ N           
Sbjct: 478 KQYENEELSWSN-LKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKAD 536

Query: 235 -----SVVTGCFSLELLDLSNNNFEGQFFSEYM-NLTRLRHLYFENNNFSGKIKDGLLSS 288
                        +++  +  NN E    S  +  + +L  L   +N       +   ++
Sbjct: 537 WTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR--HLEAFGTN 594

Query: 289 TSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVP-VQLNNLERLRILDISE 347
             L  L +  N +   IP     F+ ++E L  S N L+         ++  +  +D S 
Sbjct: 595 VKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSY 653

Query: 348 NRLSGPIA------SSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRI 401
           N++                 +   ++L  N +             + T+ L +N  +  I
Sbjct: 654 NKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SI 712

Query: 402 PHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRV 461
           P                     P          L  +DL  NK + S+   F        
Sbjct: 713 PENSL----------------KPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFR------- 748

Query: 462 GSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAM 521
                     L+   +D       +  N             S+   +             
Sbjct: 749 ----ATTLPYLS--NMD-------VSYNC-----------FSSFPTQP---------LNS 775

Query: 522 KNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNL 581
                             D   N++  + P+ I    +++ L + +N +     +    L
Sbjct: 776 SQLKAFGIRHQ------RDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLTPQL 829

Query: 582 KMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLS 619
                LDI+ N         +       ++ + Y+   
Sbjct: 830 ---YILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ 864

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  196 bits (500), Expect = 4e-53
 Identities = 93/633 (14%), Positives = 191/633 (30%), Gaps = 94/633 (14%)

Query: 19  LTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLST 78
           LT+   + I   +    +    +     E LD  +  +      +++ + +      L  
Sbjct: 251 LTKDANVPIQLKETAEYIKDYKALKAIWEALDGKNWRYYSGTINNTIHSLNWNFNKELDM 310

Query: 79  RNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWL 138
             +   V  +N     ++  L L      G  PD +     LK L    +    +   + 
Sbjct: 311 WGDQPGVDLDN---NGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFG 367

Query: 139 LRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFR-----GKLPHNMGVILQK 193
                       K+       ++       L+  D+  +          +  +  + L+ 
Sbjct: 368 DEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKD 427

Query: 194 LMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNF 253
               +++ N     I  +   + +L ++  + + F+              E  +      
Sbjct: 428 TQIGNLT-NRITF-ISKAIQRLTKLQIIYFANSPFTY------DNIAVDWEDANSDYAKQ 479

Query: 254 EGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSG---------H 304
                  + NL  L  +   N     ++ D L     LQ L+I+ N              
Sbjct: 480 YENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTR 539

Query: 305 IPHWMGNFSSELEILSMSKNHLEG-NVPVQLNNLERLRILDISENRLSGPIASSLNLSSV 363
           +          ++I  M  N+LE       L  + +L +LD   N++    A       +
Sbjct: 540 LADDEDTGPK-IQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEAFG-TNVKL 597

Query: 364 EHLSLQKNALNGLIPGELFRSCK-LVTLNLRDNTFSGRIPHQINEHS--NLRFLLLGGNH 420
             L L  N +   IP +       +  L    N     IP+  N  S   +  +    N 
Sbjct: 598 TDLKLDYNQIEE-IPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYVMGSVDFSYNK 655

Query: 421 LQGPIPDQLC-----QLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSP 475
           +     +  C     +    + + LS N+        FA              GS ++  
Sbjct: 656 IGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFAT-------------GSPIS-- 700

Query: 476 ELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNR 535
            +        L NN            ++++ + +   +                  N   
Sbjct: 701 TII-------LSNNL-----------MTSIPENSLKPKDGNY-------------KNTYL 729

Query: 536 VTGLDLSCNQLTGEIPSDI--GQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISY-- 591
           +T +DL  N+LT  +  D     L  +  +++S N  S S P    N   +++  I +  
Sbjct: 730 LTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFS-SFPTQPLNSSQLKAFGIRHQR 787

Query: 592 ----NKLTGQIPPQLTALNFLSIFNVSYNNLSG 620
               N++  Q P  +T    L    +  N++  
Sbjct: 788 DAEGNRILRQWPTGITTCPSLIQLQIGSNDIRK 820

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  128 bits (324), Expect = 6e-31
 Identities = 64/342 (18%), Positives = 112/342 (32%), Gaps = 47/342 (13%)

Query: 2   NLERNFIGS-PLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMF 60
            +  N +   P    L+ + +L +LD   N++   L +       L  L L +N  E   
Sbjct: 554 YMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLEA-FGTNVKLTDLKLDYNQIEE-I 610

Query: 61  PLSSLANHSKLEGLLLSTRNNTLHV--KTENWLPTSQLIVLGLTKCNLNGSYPDFL---- 114
           P    A   ++EGL  S  +N L       N      +  +  +   +     +      
Sbjct: 611 PEDFCAFTDQVEGLGFS--HNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMD 668

Query: 115 -LHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDF----- 168
                +   + LS+N++   FPT L      +  ++L NN  + I +      D      
Sbjct: 669 DYKGINASTVTLSYNEIQK-FPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNT 727

Query: 169 --LHHLDISCNNFRGKLPHNMGVI-LQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSR 225
             L  +D+  N     L  +     L  L  MD+S NCF    P       +L    +  
Sbjct: 728 YLLTTIDLRFNKLTS-LSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRH 785

Query: 226 NYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGL 285
                                D   N    Q+ +       L  L   +N+   K+ + L
Sbjct: 786 Q-------------------RDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDEKL 825

Query: 286 LSSTSLQVLDISNN-MLSGHIPHWMGNFSSELEILSMSKNHL 326
                L +LDI++N  +S  +        + + +L   K   
Sbjct: 826 T--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQD 865

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 58.7 bits (142), Expect = 5e-09
 Identities = 20/97 (20%), Positives = 33/97 (34%), Gaps = 4/97 (4%)

Query: 531 SNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDIS 590
            N  RVTGL L+     G +P  IGQL  +  L+   +S + S           +  +  
Sbjct: 320 DNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEER 379

Query: 591 YNKLTGQIPP----QLTALNFLSIFNVSYNNLSGRTP 623
            +++              LN   +   + N      P
Sbjct: 380 KHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKP 416

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 53.7 bits (129), Expect = 2e-07
 Identities = 12/121 (9%), Positives = 35/121 (28%), Gaps = 7/121 (5%)

Query: 529 NGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLD 588
           N +  +     +   +    +   D+     +  L+L+     G +P++   L  ++ L 
Sbjct: 294 NNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLS 353

Query: 589 ISYNKLTGQIP-------PQLTALNFLSIFNVSYNNLSGRTPDKGQFATFDESSYRGNPS 641
              +  T               +        + Y  +      +   +   + +   NP 
Sbjct: 354 FGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPE 413

Query: 642 L 642
           +
Sbjct: 414 M 414

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 46.0 bits (109), Expect = 4e-05
 Identities = 15/83 (18%), Positives = 29/83 (34%), Gaps = 4/83 (4%)

Query: 2   NLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFP 61
           + E N I     T +     L  L I SN +   +   +     L  LD++ N    +  
Sbjct: 788 DAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDEKL--TPQLYILDIADNPNISI-D 843

Query: 62  LSSLANHSKLEGLLLSTRNNTLH 84
           ++S+  + +    +L        
Sbjct: 844 VTSVCPYIEAGMYVLLYDKTQDI 866

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  185 bits (472), Expect = 3e-53
 Identities = 71/287 (24%), Positives = 119/287 (41%), Gaps = 11/287 (3%)

Query: 172 LDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEG--NIPYSAGEMKELSLLDLS-RNYF 228
            D     + G L         ++  +D+S         IP S   +  L+ L +   N  
Sbjct: 31  TDCCNRTWLGVLCDTDTQ-TYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNL 89

Query: 229 SGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSS 288
            G +  ++      L  L +++ N  G        +  L  L F  N  SG +   + S 
Sbjct: 90  VGPIPPAI-AKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSL 148

Query: 289 TSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISEN 348
            +L  +    N +SG IP   G+FS     +++S+N L G +P    NL  L  +D+S N
Sbjct: 149 PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRN 207

Query: 349 RLSGPIASSL-NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINE 407
            L G  +    +  + + + L KN+L   +  ++  S  L  L+LR+N   G +P  + +
Sbjct: 208 MLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQ 266

Query: 408 HSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKF--SGSIPPC 452
              L  L +  N+L G IP Q   LQ+  +   + NK      +P C
Sbjct: 267 LKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSPLPAC 312

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  178 bits (453), Expect = 2e-50
 Identities = 61/240 (25%), Positives = 96/240 (40%), Gaps = 9/240 (3%)

Query: 221 LDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFF--SEYMNLTRLRHLYFEN-NNF 277
            D     + G +     T  + +  LDLS  N    +   S   NL  L  LY    NN 
Sbjct: 31  TDCCNRTWLG-VLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNL 89

Query: 278 SGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNL 337
            G I   +   T L  L I++  +SG IP ++    + L  L  S N L G +P  +++L
Sbjct: 90  VGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT-LVTLDFSYNALSGTLPPSISSL 148

Query: 338 ERLRILDISENRLSGPIASSL-NLSS-VEHLSLQKNALNGLIPGELFRSCKLVTLNLRDN 395
             L  +    NR+SG I  S  + S     +++ +N L G IP        L  ++L  N
Sbjct: 149 PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN-LNLAFVDLSRN 207

Query: 396 TFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFAN 455
              G          N + + L  N L   +  ++   + L  +DL  N+  G++P     
Sbjct: 208 MLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQ 266

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  161 bits (409), Expect = 2e-44
 Identities = 77/327 (23%), Positives = 124/327 (37%), Gaps = 57/327 (17%)

Query: 25  LDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLS-SLANHSKLEGLLLSTRNNTL 83
            D  +    G L    +    +  LDLS  N    +P+  SLAN   L  L +   N   
Sbjct: 31  TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGIN--- 87

Query: 84  HVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNP 143
                                NL G  P  +     L YL ++H  + G  P +L +   
Sbjct: 88  ---------------------NLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQ--- 123

Query: 144 KLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNC 203
                 +K                 L  LD S N   G LP ++   L  L+ +    N 
Sbjct: 124 ------IKT----------------LVTLDFSYNALSGTLPPSISS-LPNLVGITFDGNR 160

Query: 204 FEGNIPYSAGEMKELS-LLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYM 262
             G IP S G   +L   + +SRN  +G +  +      +L  +DLS N  EG     + 
Sbjct: 161 ISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTF--ANLNLAFVDLSRNMLEGDASVLFG 218

Query: 263 NLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMS 322
           +    + ++   N+ +  +   +  S +L  LD+ NN + G +P  +      L  L++S
Sbjct: 219 SDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKF-LHSLNVS 276

Query: 323 KNHLEGNVPVQLNNLERLRILDISENR 349
            N+L G +P Q  NL+R  +   + N+
Sbjct: 277 FNNLCGEIP-QGGNLQRFDVSAYANNK 302

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  143 bits (364), Expect = 3e-38
 Identities = 73/323 (22%), Positives = 103/323 (31%), Gaps = 86/323 (26%)

Query: 6   NFIGSPLI-TCLKNLTRLKILDISS-NQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLS 63
           N      I + L NL  L  L I   N L G +P  I+ LT L YL ++H N  G  P  
Sbjct: 61  NLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIP-D 119

Query: 64  SLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYL 123
            L+    L                                                   L
Sbjct: 120 FLSQIKTLV-------------------------------------------------TL 130

Query: 124 DLSHNKLVGNFPTWL--LRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRG 181
           D S+N L G  P  +  L N                           L  +    N   G
Sbjct: 131 DFSYNALSGTLPPSISSLPN---------------------------LVGITFDGNRISG 163

Query: 182 KLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCF 241
            +P + G   +    M IS+N   G IP +   +  L+ +DLSRN   G  S        
Sbjct: 164 AIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVL-FGSDK 221

Query: 242 SLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNML 301
           + + + L+ N+       +      L  L   NN   G +  GL     L  L++S N L
Sbjct: 222 NTQKIHLAKNSLAFD-LGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL 280

Query: 302 SGHIPHWMGNFSSELEILSMSKN 324
            G IP   GN     ++ + + N
Sbjct: 281 CGEIPQ-GGNLQR-FDVSAYANN 301

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  129 bits (326), Expect = 4e-33
 Identities = 38/105 (36%), Positives = 53/105 (50%), Gaps = 1/105 (0%)

Query: 539 LDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQI 598
           +DLS N L G+     G  +    ++L+ NSL+  +       K +  LD+  N++ G +
Sbjct: 202 VDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTL 260

Query: 599 PPQLTALNFLSIFNVSYNNLSGRTPDKGQFATFDESSYRGNPSLC 643
           P  LT L FL   NVS+NNL G  P  G    FD S+Y  N  LC
Sbjct: 261 PQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLC 305

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  113 bits (286), Expect = 6e-28
 Identities = 57/275 (20%), Positives = 85/275 (30%), Gaps = 79/275 (28%)

Query: 2   NLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFP 61
            +    +   +   L  +  L  LD S N L+G+LP  IS+L +L  +    N   G  P
Sbjct: 107 YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166

Query: 62  LSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLK 121
             S  + SKL                                                  
Sbjct: 167 -DSYGSFSKL------------------------------------------------FT 177

Query: 122 YLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRG 181
            + +S N+L G  P      N                          L  +D+S N   G
Sbjct: 178 SMTISRNRLTGKIPPTFANLN--------------------------LAFVDLSRNMLEG 211

Query: 182 KLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCF 241
                 G   +    + ++KN    ++    G  K L+ LDL  N   G L Q  +T   
Sbjct: 212 DASVLFGS-DKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQG-LTQLK 268

Query: 242 SLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNN 276
            L  L++S NN  G+   +  NL R     + NN 
Sbjct: 269 FLHSLNVSFNNLCGE-IPQGGNLQRFDVSAYANNK 302

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  110 bits (278), Expect = 7e-27
 Identities = 41/150 (27%), Positives = 60/150 (40%), Gaps = 4/150 (2%)

Query: 310 GNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSG--PIASSL-NLSSVEHL 366
              SS L           G +        R+  LD+S   L    PI SSL NL  +  L
Sbjct: 22  TTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFL 81

Query: 367 SLQK-NALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPI 425
            +   N L G IP  + +  +L  L +     SG IP  +++   L  L    N L G +
Sbjct: 82  YIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTL 141

Query: 426 PDQLCQLQKLAMMDLSRNKFSGSIPPCFAN 455
           P  +  L  L  +    N+ SG+IP  + +
Sbjct: 142 PPSISSLPNLVGITFDGNRISGAIPDSYGS 171

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 96.4 bits (241), Expect = 6e-22
 Identities = 31/89 (34%), Positives = 50/89 (56%), Gaps = 1/89 (1%)

Query: 537 TGLDLS-CNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLT 595
             L +   N L G IP  I +L  +  L +++ ++SG+IP+  S +K + +LD SYN L+
Sbjct: 79  NFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALS 138

Query: 596 GQIPPQLTALNFLSIFNVSYNNLSGRTPD 624
           G +PP +++L  L       N +SG  PD
Sbjct: 139 GTLPPSISSLPNLVGITFDGNRISGAIPD 167

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 94.5 bits (236), Expect = 2e-21
 Identities = 25/87 (28%), Positives = 49/87 (56%), Gaps = 1/87 (1%)

Query: 539 LDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQI 598
           L ++   ++G IP  + Q++ ++ L+ S N+LSG++P S S+L  +  +    N+++G I
Sbjct: 106 LYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAI 165

Query: 599 PPQLTALNFLSIF-NVSYNNLSGRTPD 624
           P    + + L     +S N L+G+ P 
Sbjct: 166 PDSYGSFSKLFTSMTISRNRLTGKIPP 192

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 92.6 bits (231), Expect = 1e-20
 Identities = 32/98 (32%), Positives = 47/98 (47%), Gaps = 3/98 (3%)

Query: 529 NGSNVNRVTGLDLSCNQLTGE--IPSDIGQLQAILALNLSN-NSLSGSIPESFSNLKMIE 585
             +   RV  LDLS   L     IPS +  L  +  L +   N+L G IP + + L  + 
Sbjct: 45  TDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLH 104

Query: 586 SLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTP 623
            L I++  ++G IP  L+ +  L   + SYN LSG  P
Sbjct: 105 YLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLP 142

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 91.8 bits (229), Expect = 2e-20
 Identities = 24/98 (24%), Positives = 47/98 (47%), Gaps = 2/98 (2%)

Query: 531 SNVNRVTGLDLSCNQLTGEIPSDIGQLQAIL-ALNLSNNSLSGSIPESFSNLKMIESLDI 589
           S++  + G+    N+++G IP   G    +  ++ +S N L+G IP +F+NL +   +D+
Sbjct: 146 SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAF-VDL 204

Query: 590 SYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPDKGQ 627
           S N L G       +       +++ N+L+      G 
Sbjct: 205 SRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGL 242

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 75.6 bits (187), Expect = 5e-15
 Identities = 27/91 (29%), Positives = 38/91 (41%), Gaps = 3/91 (3%)

Query: 537 TGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGS--IPESFSNLKMIESLDIS-YNK 593
              D       G +     Q   +  L+LS  +L     IP S +NL  +  L I   N 
Sbjct: 29  PTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINN 88

Query: 594 LTGQIPPQLTALNFLSIFNVSYNNLSGRTPD 624
           L G IPP +  L  L    +++ N+SG  PD
Sbjct: 89  LVGPIPPAIAKLTQLHYLYITHTNVSGAIPD 119

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 62.6 bits (153), Expect = 1e-10
 Identities = 17/77 (22%), Positives = 29/77 (37%), Gaps = 2/77 (2%)

Query: 1   MNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMF 60
           ++L RN +         +    + + ++ N L   L   +    +L  LDL +N   G  
Sbjct: 202 VDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTL 260

Query: 61  PLSSLANHSKLEGLLLS 77
           P   L     L  L +S
Sbjct: 261 P-QGLTQLKFLHSLNVS 276

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  164 bits (418), Expect = 2e-42
 Identities = 118/708 (16%), Positives = 232/708 (32%), Gaps = 89/708 (12%)

Query: 17  KNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLL 76
           + L   + L +S N +     S    L  L+ L+L            +  N   L  L L
Sbjct: 21  QVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDL 80

Query: 77  STRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSY--PDFLLHQYHLKYLDLSHNKLVGNF 134
              +    +  + +     L  L L  C L+ +     +  +   L  LDLS N++   +
Sbjct: 81  G-SSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLY 139

Query: 135 PTWLLRNNPKLEVLLLKNNSFSGILQ--LPKAKHDFLHHLDISCNNFRGKLPHNMGVILQ 192
                     L+ +   +N    + +  L   +   L    ++ N+   ++  + G  + 
Sbjct: 140 LHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMN 199

Query: 193 KLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNN 252
               M                    L +LD+S N ++  ++ +        +   L   +
Sbjct: 200 PFRNMV-------------------LEILDVSGNGWTVDITGNFSNAISKSQAFSLILAH 240

Query: 253 FEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNF 312
                   + N+       F             L+ +S++ LD+S+  +           
Sbjct: 241 HIMGAGFGFHNIKDPDQNTFAG-----------LARSSVRHLDLSHGFVFSLNSRVFETL 289

Query: 313 SSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSL-NLSSVEHLSLQKN 371
              L++L+++ N +          L+ L++L++S N L    +S+   L  V ++ LQKN
Sbjct: 290 KD-LKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKN 348

Query: 372 ALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQ 431
            +  +         KL TL+LRDN  +      I+   ++  + L GN L   +P     
Sbjct: 349 HIAIIQDQTFKFLEKLQTLDLRDNALT-----TIHFIPSIPDIFLSGNKLVT-LPKINLT 402

Query: 432 LQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGN--- 488
              +    LS N+        F   +        +L  ++        +       +   
Sbjct: 403 ANLI---HLSENRLENLDILYFLLRVP----HLQILILNQNRFSSCSGDQTPSENPSLEQ 455

Query: 489 -NRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLT 547
                N                       ++ A +          ++ +  L L+ N L 
Sbjct: 456 LFLGEN----------------------MLQLAWETELCWDVFEGLSHLQVLYLNHNYLN 493

Query: 548 GEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNF 607
              P     L A+  L+L++N L+            +E LDIS N+L     P       
Sbjct: 494 SLPPGVFSHLTALRGLSLNSNRLTVLSHNDL--PANLEILDISRNQLL-APNPD--VFVS 548

Query: 608 LSIFNVSYNNLSGRTPDKGQFATFDESSYRGNPSLCAWLIQQKYSRTLKPTTTQASGAEE 667
           LS+ ++++N          + +TF       N ++            + P +        
Sbjct: 549 LSVLDITHNKFICEC----ELSTFINWLNHTNVTIAGPPAD---IYCVYPDSFSGVSLFS 601

Query: 668 EEEEEDDDESAIDMVTLYSSFGASYVTVILVLIAILWINSYWRRLWFY 715
              E  D+E  +  +   S F    VT+ L L+ IL +  +    +  
Sbjct: 602 LSTEGCDEEEVLKSLKF-SLFIVCTVTLTLFLMTILTVTKFRGFCFIC 648

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  158 bits (402), Expect = 2e-40
 Identities = 89/480 (18%), Positives = 154/480 (32%), Gaps = 38/480 (7%)

Query: 2   NLERNFIGSPL-ITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNF-EGM 59
            L   +    +     +NL  L+ILD+ S+++    P     L  L  L L      + +
Sbjct: 54  ELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAV 113

Query: 60  FPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPT-SQLIVLGLTKCNLNGSYPDFL--LH 116
                  N   L  L LS +N    +         + L  +  +   +       L  L 
Sbjct: 114 LKDGYFRNLKALTRLDLS-KNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQ 172

Query: 117 QYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISC 176
              L +  L+ N L         +       ++L+    SG         +F + +  S 
Sbjct: 173 GKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQ 232

Query: 177 NNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSV 236
                   H MG         D  +N F G    S      +  LDLS  +    L+  V
Sbjct: 233 AFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSS------VRHLDLSHGFVF-SLNSRV 285

Query: 237 VTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDI 296
                 L++L+L+ N         +  L  L+ L    N               +  +D+
Sbjct: 286 FETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDL 345

Query: 297 SNNMLSGHIPHWMGNFSSELEILSMSKN--------------HLEGNVPVQLNNLE-RLR 341
             N ++  I      F  +L+ L +  N               L GN  V L  +     
Sbjct: 346 QKNHIA-IIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTAN 404

Query: 342 ILDISENRLSG--PIASSLNLSSVEHLSLQKNALNGLIPGELFRSC-KLVTLNLRDNTFS 398
           ++ +SENRL     +   L +  ++ L L +N  +     +       L  L L +N   
Sbjct: 405 LIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQ 464

Query: 399 GRIPHQINEH-----SNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCF 453
                ++        S+L+ L L  N+L    P     L  L  + L+ N+ +  +    
Sbjct: 465 LAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT-VLSHND 523

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  117 bits (294), Expect = 3e-27
 Identities = 73/356 (20%), Positives = 132/356 (37%), Gaps = 73/356 (20%)

Query: 2   NLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFP 61
           +L   F+ S      + L  LK+L+++ N++N         L +L+ L+LS+N       
Sbjct: 272 DLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLG---- 327

Query: 62  LSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLK 121
                                L+      LP                           + 
Sbjct: 328 --------------------ELYSSNFYGLP--------------------------KVA 341

Query: 122 YLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRG 181
           Y+DL  N +         +   KL+ L L++N+ + I  +P      +  + +S N    
Sbjct: 342 YIDLQKNHI-AIIQDQTFKFLEKLQTLDLRDNALTTIHFIP-----SIPDIFLSGNKLV- 394

Query: 182 KLPHNMGVILQKLMYMDISKNCFEG-NIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGC 240
                +  I      + +S+N  E  +I Y    +  L +L L++N FS        +  
Sbjct: 395 ----TLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSEN 450

Query: 241 FSLELLDLSNNNFEGQFFSE-----YMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLD 295
            SLE L L  N  +  + +E     +  L+ L+ LY  +N  +          T+L+ L 
Sbjct: 451 PSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLS 510

Query: 296 ISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLS 351
           +++N L+  + H      + LEIL +S+N L        +    L +LDI+ N+  
Sbjct: 511 LNSNRLT-VLSHND--LPANLEILDISRNQLLA---PNPDVFVSLSVLDITHNKFI 560

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  114 bits (286), Expect = 3e-26
 Identities = 68/411 (16%), Positives = 132/411 (32%), Gaps = 52/411 (12%)

Query: 241 FSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSS-TSLQVLDISNN 299
           F   +      N   Q       L     L    N     +          LQ+L++ + 
Sbjct: 4   FDGRIAFYRFCNLT-QVPQ---VLNTTERLLLSFNYIR-TVTASSFPFLEQLQLLELGSQ 58

Query: 300 MLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSL- 358
                I          L IL +  + +    P     L  L  L +    LS  +     
Sbjct: 59  YTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGY 118

Query: 359 --NLSSVEHLSLQKNALNGLIPGELFRSC-KLVTLNLRDNTFSGRIPHQIN--EHSNLRF 413
             NL ++  L L KN +  L     F     L +++   N       H++   +   L F
Sbjct: 119 FRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSF 178

Query: 414 LLLGGNHLQGPIPDQLCQLQK------LAMMDLSRNKFSGSIPPCFANVLSW-------- 459
             L  N L   +     +         L ++D+S N ++  I   F+N +S         
Sbjct: 179 FSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLIL 238

Query: 460 -RVGSDDVLNGSKLNSPELD-------EEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAI 511
                        +  P+ +         +    L +    +    ++  L  L+    +
Sbjct: 239 AHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKV---L 295

Query: 512 D-ERVEIEFAMKNRYEIYNG--SNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNN 568
           +    +I        +I +     ++ +  L+LS N L     S+   L  +  ++L  N
Sbjct: 296 NLAYNKIN-------KIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKN 348

Query: 569 SLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLS 619
            ++    ++F  L+ +++LD+  N LT      +  +  +    +S N L 
Sbjct: 349 HIAIIQDQTFKFLEKLQTLDLRDNALT-----TIHFIPSIPDIFLSGNKLV 394

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  154 bits (392), Expect = 4e-40
 Identities = 95/466 (20%), Positives = 156/466 (33%), Gaps = 29/466 (6%)

Query: 2   NLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFP 61
            L  N I S  +     L+ L+ L      L       I +L +L+ L+++HN  +    
Sbjct: 82  ILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKL 141

Query: 62  LSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLT---KCNLNGSYPDFLLHQY 118
               +N + LE L LS  N    +   +     Q+ +L L+     N           + 
Sbjct: 142 PEYFSNLTNLEHLDLS-SNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI 200

Query: 119 HLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFL--------H 170
            L  L L +N    N     ++    LEV  L    F     L K     L         
Sbjct: 201 RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE 260

Query: 171 HLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSA-GEMKELSLLDLSRNYFS 229
              ++  ++      ++   L  +    +     E    +S     + L L++     F 
Sbjct: 261 EFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFP 320

Query: 230 GGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENN--NFSGKIKDGLLS 287
                       SL+ L  ++N     F    ++L  L  L    N  +F G        
Sbjct: 321 TL-------KLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFG 371

Query: 288 STSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPV-QLNNLERLRILDIS 346
           +TSL+ LD+S N +   +          LE L    ++L+         +L  L  LDIS
Sbjct: 372 TTSLKYLDLSFNGVI-TMSSNFLGLEQ-LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDIS 429

Query: 347 ENRLSGPIASSL-NLSSVEHLSLQKNALNGLIPGELFRSC-KLVTLNLRDNTFSGRIPHQ 404
                         LSS+E L +  N+       ++F     L  L+L         P  
Sbjct: 430 HTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA 489

Query: 405 INEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIP 450
            N  S+L+ L +  N L+        +L  L  + L  N +  S P
Sbjct: 490 FNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  149 bits (377), Expect = 3e-38
 Identities = 102/609 (16%), Positives = 186/609 (30%), Gaps = 114/609 (18%)

Query: 20  TRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTR 79
              K LD+S N L         +   L+ LDLS    +      +  + S L  L+L+  
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILT-- 84

Query: 80  NNTLHVKTENWL-PTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWL 138
            N +           S L  L   + NL       + H   LK L+++HN +        
Sbjct: 85  GNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY 144

Query: 139 LRNNPKLEVLLLKNNSFSGI----LQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKL 194
             N   LE L L +N    I    L++          LD+S N                 
Sbjct: 145 FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF------------- 191

Query: 195 MYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFE 254
               I    F+            L  L L  N+ S  + ++ + G   LE+  L    F 
Sbjct: 192 ----IQPGAFKEI---------RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFR 238

Query: 255 GQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSS 314
            +      NL +      E            L + +++   ++           + N  +
Sbjct: 239 NE-----GNLEKFDKSALEG-----------LCNLTIEEFRLAYLDYYLDDIIDLFNCLT 282

Query: 315 ELEILSMSKNHLEGNVPVQ-LNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNAL 373
            +   S+    +E           + L +++    +       +L L S++ L+   N  
Sbjct: 283 NVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFP-----TLKLKSLKRLTFTSNKG 337

Query: 374 NGLIPGELFRSCKLVTLNLRDN--TFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQ 431
                     S  L  L+L  N  +F G         ++L++L L  N +   +      
Sbjct: 338 GNAFSEVDLPS--LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLG 394

Query: 432 LQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRS 491
           L++L  +D   +             L                       + +  + +  +
Sbjct: 395 LEQLEHLDFQHSNLKQMSEFSVFLSLR---------------------NLIYLDISHTHT 433

Query: 492 SNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIP 551
                G++  LS+LE                                L ++ N       
Sbjct: 434 RVAFNGIFNGLSSLEV-------------------------------LKMAGNSFQENFL 462

Query: 552 SDI-GQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSI 610
            DI  +L+ +  L+LS   L    P +F++L  ++ L+++ N+L          L  L  
Sbjct: 463 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQK 522

Query: 611 FNVSYNNLS 619
             +  N   
Sbjct: 523 IWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  114 bits (288), Expect = 8e-27
 Identities = 71/401 (17%), Positives = 138/401 (34%), Gaps = 26/401 (6%)

Query: 242 SLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNML 301
           S + LDLS N         + +   L+ L                S + L  L ++ N +
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88

Query: 302 SGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRL-SGPIASSL-N 359
                      SS L+ L   + +L       + +L+ L+ L+++ N + S  +     N
Sbjct: 89  QSLALGAFSGLSS-LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147

Query: 360 LSSVEHLSLQKNALNGLIPGELFRSCKL----VTLNLRDNTFSGRIPHQINEHSNLRFLL 415
           L+++EHL L  N +  +   +L    ++    ++L+L  N  +  I     +   L  L 
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLHKLT 206

Query: 416 LGGNHLQGPIPDQLCQ-LQKLAMMDLSRNKFSG-----SIPPCFANVLSWRVGSDDVLNG 469
           L  N     +     Q L  L +  L   +F                L      +     
Sbjct: 207 LRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEE--FRL 264

Query: 470 SKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYN 529
           + L+    D    F  L N  S + +      +              +      ++  + 
Sbjct: 265 AYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELV----NCKFGQFP 320

Query: 530 GSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLS--GSIPESFSNLKMIESL 587
              +  +  L  + N+      S++  L ++  L+LS N LS  G   +S      ++ L
Sbjct: 321 TLKLKSLKRLTFTSNKGG-NAFSEVD-LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYL 378

Query: 588 DISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPDKGQF 628
           D+S+N +   +      L  L   +  ++NL  +  +   F
Sbjct: 379 DLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVF 417

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  112 bits (283), Expect = 4e-26
 Identities = 79/434 (18%), Positives = 145/434 (33%), Gaps = 35/434 (8%)

Query: 221 LDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGK 280
           LDLS N     L          L++LDLS    +      Y +L+ L  L    N     
Sbjct: 33  LDLSFNPLRH-LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL 91

Query: 281 IKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHL-EGNVPVQLNNLER 339
                   +SLQ L      L+      +G+  + L+ L+++ N +    +P   +NL  
Sbjct: 92  ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT-LKELNVAHNLIQSFKLPEYFSNLTN 150

Query: 340 LRILDISENRLSGPIASSLNL-----SSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRD 394
           L  LD+S N++     + L +          L L  N +N  I    F+  +L  L LR+
Sbjct: 151 LEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEIRLHKLTLRN 209

Query: 395 NTFSGRIPHQI-------NEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNK--- 444
           N  S  +             H  +        +L+      L  L  L + +        
Sbjct: 210 NFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDY 269

Query: 445 FSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSA 504
           +   I   F  + +    S   +   ++     +   +   L N +         + L  
Sbjct: 270 YLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKR 329

Query: 505 LEKRAAIDERVEIEFAMKN------------RYEIYNGSNVN--RVTGLDLSCNQLTGEI 550
           L   +        E  + +                 + S+     +  LDLS N +   +
Sbjct: 330 LTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TM 388

Query: 551 PSDIGQLQAILALNLSNNSLSGSIPES-FSNLKMIESLDISYNKLTGQIPPQLTALNFLS 609
            S+   L+ +  L+  +++L      S F +L+ +  LDIS+             L+ L 
Sbjct: 389 SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE 448

Query: 610 IFNVSYNNLSGRTP 623
           +  ++ N+      
Sbjct: 449 VLKMAGNSFQENFL 462

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 44.7 bits (106), Expect = 1e-04
 Identities = 16/85 (18%), Positives = 32/85 (37%), Gaps = 3/85 (3%)

Query: 540 DLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIP 599
                    +IP ++    +   L+LS N L      SF +   ++ LD+S  ++     
Sbjct: 13  QCMELNFY-KIPDNLPF--STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED 69

Query: 600 PQLTALNFLSIFNVSYNNLSGRTPD 624
               +L+ LS   ++ N +      
Sbjct: 70  GAYQSLSHLSTLILTGNPIQSLALG 94

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  146 bits (369), Expect = 3e-37
 Identities = 87/474 (18%), Positives = 167/474 (35%), Gaps = 39/474 (8%)

Query: 2   NLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFP 61
           +L  N I       L+    L++L + S+++N        +L SLE+LDLS N+   +  
Sbjct: 32  DLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSL-S 90

Query: 62  LSSLANHSKLEGLLLSTRNNTLHVKTENWLPT--SQLIVLGLTKCNLNGSYP-DFLLHQY 118
            S     S L+ L L    N         L    + L  L +                  
Sbjct: 91  SSWFGPLSSLKYLNLM--GNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLT 148

Query: 119 HLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNN 178
            L  L++    L  N+ +  L++   +  L L  +  + +L++       + +L++   N
Sbjct: 149 SLNELEIKALSL-RNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTN 207

Query: 179 FRG--KLPHNMGVILQKLMYMDISKNCFEGN-------IPYSAGEMKELSLLDLSRNYF- 228
                  P  +  +   +  +    +            +     E+ E+   D + N   
Sbjct: 208 LARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLG 267

Query: 229 ------SGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIK 282
                 S  +S+       ++  L +          + Y  L +++ +  EN+     + 
Sbjct: 268 DFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVP 326

Query: 283 DGLLSS-TSLQVLDISNNMLSGHIPHWMGNFS--SELEILSMSKNHLE--GNVPVQLNNL 337
                   SL+ LD+S N++                L+ L +S+NHL         L  L
Sbjct: 327 CSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTL 386

Query: 338 ERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTF 397
           + L  LDIS N       S      +  L+L    +  ++   + ++  L  L++ +N  
Sbjct: 387 KNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIR-VVKTCIPQT--LEVLDVSNNNL 443

Query: 398 SGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPP 451
                  +     L+ L +  N L+  +PD       L +M +SRN+   S+P 
Sbjct: 444 D-SFSLFL---PRLQELYISRNKLKT-LPDAS-LFPVLLVMKISRNQLK-SVPD 490

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  136 bits (345), Expect = 4e-34
 Identities = 77/460 (16%), Positives = 143/460 (31%), Gaps = 39/460 (8%)

Query: 19  LTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLST 78
              +K LD+S N++       +    +L+ L L  +         +  +   LE L LS 
Sbjct: 25  TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN-TIEGDAFYSLGSLEHLDLS- 82

Query: 79  RNNTLHVKTENWL-PTSQLIVLGLTKCNLNG-SYPDFLLHQYHLKYLDLSHNKLVGNFPT 136
            +N L   + +W  P S L  L L               +  +L+ L + + +       
Sbjct: 83  -DNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRR 141

Query: 137 WLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMY 196
                   L  L +K  S              +HHL +  +     L      IL  + Y
Sbjct: 142 IDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRY 200

Query: 197 MDISKNCFEGNIPYSAGEMKELSLLDLSRN-----------------YFSGGLSQSVVTG 239
           +++                +  S +                       +   LS+     
Sbjct: 201 LELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDD 260

Query: 240 CFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNN 299
           C    L D + +  +       +    +R L+         +         ++ + + N+
Sbjct: 261 CTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENS 320

Query: 300 MLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQ---LNNLERLRILDISENRLS---GP 353
            +   +P         LE L +S+N +                L+ L +S+N L      
Sbjct: 321 KVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKT 379

Query: 354 IASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRF 413
               L L ++  L + +N  +  +P       K+  LNL        +   I     L  
Sbjct: 380 GEILLTLKNLTSLDISRNTFHP-MPDSCQWPEKMRFLNLSSTGIR-VVKTCIP--QTLEV 435

Query: 414 LLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCF 453
           L +  N+L       L +LQ+L    +SRNK   ++P   
Sbjct: 436 LDVSNNNLDS-FSLFLPRLQEL---YISRNKLK-TLPDAS 470

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  130 bits (329), Expect = 4e-32
 Identities = 70/402 (17%), Positives = 143/402 (35%), Gaps = 50/402 (12%)

Query: 1   MNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMF 60
           + ++   + +     LK++  +  L +  ++    L      L+S+ YL+L   N     
Sbjct: 153 LEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQ 212

Query: 61  PLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHL 120
                 +        L+ R + L  ++ N L      +L L+                 +
Sbjct: 213 FSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELS----------------EV 256

Query: 121 KYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFR 180
           ++ D + N L                      +    + +L K +   +  L I    + 
Sbjct: 257 EFDDCTLNGL-----------------GDFNPSESDVVSELGKVETVTIRRLHIP-QFYL 298

Query: 181 GKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGE-MKELSLLDLSRNYFS--GGLSQSVV 237
                 +  +L+K+  + +  +     +P S  + +K L  LDLS N        + +  
Sbjct: 299 FYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACK 357

Query: 238 TGCFSLELLDLSNNNFE--GQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLD 295
               SL+ L LS N+     +     + L  L  L    N F   + D       ++ L+
Sbjct: 358 GAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLN 416

Query: 296 ISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIA 355
           +S+  +   +        + LE+L +S N+L+ +  +    L RL+ L IS N+L   + 
Sbjct: 417 LSSTGIR-VVKT--CIPQT-LEVLDVSNNNLD-SFSL---FLPRLQELYISRNKLKT-LP 467

Query: 356 SSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTF 397
            +     +  + + +N L  +  G   R   L  + L  N +
Sbjct: 468 DASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  125 bits (315), Expect = 3e-30
 Identities = 98/573 (17%), Positives = 185/573 (32%), Gaps = 94/573 (16%)

Query: 22  LKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNN 81
             + D  S     S+PS ++   +++ LDLS N          L   + L+ L+L     
Sbjct: 7   SGVCDGRSRSFT-SIPSGLT--AAMKSLDLSFNKIT-YIGHGDLRACANLQVLILK---- 58

Query: 82  TLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRN 141
                                   +N    D       L++LDLS N L  +  +     
Sbjct: 59  ---------------------SSRINTIEGDAFYSLGSLEHLDLSDNHLS-SLSSSWFGP 96

Query: 142 NPKLEVLLLKNNSFSGILQLPKAKH-DFLHHLDISCNNFRGKLPHNMGVILQKLMYMDIS 200
              L+ L L  N +  +       +   L  L I       ++       L  L  ++I 
Sbjct: 97  LSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIK 156

Query: 201 KNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNN-------- 252
                     S   ++++  L L  +  +  L +       S+  L+L + N        
Sbjct: 157 ALSLRNYQSQSLKSIRDIHHLTLHLSESAF-LLEIFADILSSVRYLELRDTNLARFQFSP 215

Query: 253 FEGQFFSEYMNLTRLRHLYFENNNFSG--KIKDGLLSSTSLQVLDISNNMLSGHIPHWMG 310
                 S  M     R     + +F+   K+   +L  + ++  D + N L    P    
Sbjct: 216 LPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESD 275

Query: 311 NFS-------SELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSG-PIASSLNLSS 362
             S         +  L + + +L  ++    + LE+++ + +  +++   P + S +L S
Sbjct: 276 VVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKS 335

Query: 363 VEHLSLQKNALNGLIPGE--LFRSC-KLVTLNLRDNTFS--GRIPHQINEHSNLRFLLLG 417
           +E L L +N +            +   L TL L  N      +    +    NL  L + 
Sbjct: 336 LEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDIS 395

Query: 418 GNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPEL 477
            N    P+PD     +K+  ++LS       +  C    L     S++ L+   L  P L
Sbjct: 396 RNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCIPQTLEVLDVSNNNLDSFSLFLPRL 453

Query: 478 DEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVT 537
            +E+    +  N+           L  L                       + S    + 
Sbjct: 454 -QEL---YISRNK-----------LKTLP----------------------DASLFPVLL 476

Query: 538 GLDLSCNQLTGEIPSDIGQLQAILALNLSNNSL 570
            + +S NQL         +L ++  + L  N  
Sbjct: 477 VMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  121 bits (306), Expect = 4e-29
 Identities = 85/493 (17%), Positives = 161/493 (32%), Gaps = 64/493 (12%)

Query: 152 NNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYS 211
           +        +P      +  LD+S N     + H        L  + +  +        +
Sbjct: 11  DGRSRSFTSIPSGLTAAMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRINTIEGDA 69

Query: 212 AGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNF-EGQFFSEYMNLTRLRHL 270
              +  L  LDLS N+ S  LS S      SL+ L+L  N +      S + NLT L+ L
Sbjct: 70  FYSLGSLEHLDLSDNHLS-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTL 128

Query: 271 YFENNNFSGKIKDGLLSS-TSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGN 329
              N     +I+    +  TSL  L+I    L  +    + +    +  L++  +     
Sbjct: 129 RIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRD-IHHLTLHLSESAFL 187

Query: 330 VPVQLNNLERLRILDISENRLSG---------PIASSLNLSSVEHLSLQKNALNGL--IP 378
           + +  + L  +R L++ +  L+           ++S +   +     L   + N L  + 
Sbjct: 188 LEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLL 247

Query: 379 GELFRSCKLVTLNLRDNTFSGRIPHQIN--------EHSNLRFLLLGGNHLQGPIPDQLC 430
             +    ++   +   N      P + +        E   +R L +   +L   +     
Sbjct: 248 RYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYS 307

Query: 431 QLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNR 490
            L+K+  + +  +K          ++ S        L+ + +    L      G+  + +
Sbjct: 308 LLEKVKRITVENSKVFLVPCSFSQHLKSLEFLD---LSENLMVEEYLKNSACKGAWPSLQ 364

Query: 491 ----SSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQL 546
               S N +  M +    L                           +  +T LD+S N  
Sbjct: 365 TLVLSQNHLRSMQKTGEIL-------------------------LTLKNLTSLDISRNTF 399

Query: 547 TGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALN 606
              +P      + +  LNLS+  +          L   E LD+S N L       L  L 
Sbjct: 400 H-PMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTL---EVLDVSNNNLD-SFSLFLPRLQ 454

Query: 607 FLSIFNVSYNNLS 619
            L    +S N L 
Sbjct: 455 EL---YISRNKLK 464

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  106 bits (266), Expect = 4e-24
 Identities = 64/361 (17%), Positives = 130/361 (36%), Gaps = 20/361 (5%)

Query: 288 STSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISE 347
           + +++ LD+S N ++ +I H      + L++L +  + +         +L  L  LD+S+
Sbjct: 25  TAAMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSD 83

Query: 348 NRLSG-PIASSLNLSSVEHLSLQKNALNGLIPGELFRSC-KLVTLNLRDNTFSGRIPHQI 405
           N LS    +    LSS+++L+L  N    L    LF +   L TL + +      I    
Sbjct: 84  NHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRID 143

Query: 406 NEH-SNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANV--LSWRVG 462
               ++L  L +    L+      L  ++ +  + L  ++ +  +      +  + +   
Sbjct: 144 FAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLEL 203

Query: 463 SDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMK 522
            D  L   + +   +DE          R S      +  L  L +       VE +    
Sbjct: 204 RDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTL 263

Query: 523 NRYEIYNGSNVNRVTG-----------LDLSCNQLTGEIPSDIGQLQAILALNLSNNSLS 571
           N    +N S  + V+            L +    L  ++ +    L+ +  + + N+ + 
Sbjct: 264 NGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF 323

Query: 572 GSIPESFSNLKMIESLDISYNKLTGQIPPQ---LTALNFLSIFNVSYNNLSGRTPDKGQF 628
                   +LK +E LD+S N +  +         A   L    +S N+L          
Sbjct: 324 LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEIL 383

Query: 629 A 629
            
Sbjct: 384 L 384

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 47.8 bits (114), Expect = 9e-06
 Identities = 30/150 (20%), Positives = 60/150 (40%), Gaps = 18/150 (12%)

Query: 2   NLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFP 61
           ++ RN       +C +   +++ L++SS  +   + + I    +LE LD+S+NN +    
Sbjct: 393 DISRNTFHPMPDSC-QWPEKMRFLNLSSTGIR-VVKTCI--PQTLEVLDVSNNNLDSFS- 447

Query: 62  LSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLK 121
                   +L+ L +S   N L    +  L    L+V+ +++  L             L+
Sbjct: 448 ----LFLPRLQELYIS--RNKLKTLPDASLFPV-LLVMKISRNQLKSVPDGIFDRLTSLQ 500

Query: 122 YLDLSHNKLVGN------FPTWLLRNNPKL 145
            + L  N    +         WL +N+ K 
Sbjct: 501 KIWLHTNPWDCSCPRIDYLSRWLNKNSQKE 530

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 43.2 bits (102), Expect = 3e-04
 Identities = 24/98 (24%), Positives = 36/98 (36%), Gaps = 11/98 (11%)

Query: 18  NLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLS 77
            L RL+ L IS N+L  +LP   S    L  + +S N  +   P       + L+ + L 
Sbjct: 449 FLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLK-SVPDGIFDRLTSLQKIWLH 505

Query: 78  TRNNTLH------VKTENWLPTSQLIVLGLTKCNLNGS 109
              N              WL  +     G  KC+ +G 
Sbjct: 506 --TNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCSGSGK 541

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  134 bits (339), Expect = 8e-34
 Identities = 96/476 (20%), Positives = 164/476 (34%), Gaps = 70/476 (14%)

Query: 13  ITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLE 72
           I     L       +    +  ++    ++L  +  L       + +  +  L N     
Sbjct: 17  IFTDTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSIDGVEYLNN----- 69

Query: 73  GLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVG 132
                                  L  +  +   L    P   L +  L  + +++N++  
Sbjct: 70  -----------------------LTQINFSNNQLTDITPLKNLTK--LVDILMNNNQIAD 104

Query: 133 NFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQ 192
             P   L N   L  L L NN  + I  L    +  L+ L++S N         +   L 
Sbjct: 105 ITP---LANLTNLTGLTLFNNQITDIDPLKNLTN--LNRLELSSNTISD--ISALSG-LT 156

Query: 193 KLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNN 252
            L  +    N      P     +  L  LD+S N  S     SV+    +LE L  +NN 
Sbjct: 157 SLQQLSFG-NQVTDLKPL--ANLTTLERLDISSNKVS---DISVLAKLTNLESLIATNNQ 210

Query: 253 FEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNF 312
                 +    LT L  L    N         L S T+L  LD++NN +S   P  +   
Sbjct: 211 ISD--ITPLGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGL 264

Query: 313 SSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNA 372
           +  L  L +  N +    P  L  L  L  L+++EN+L      S NL ++ +L+L  N 
Sbjct: 265 TK-LTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPIS-NLKNLTYLTLYFNN 320

Query: 373 LNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQL 432
           ++ + P  +    KL  L   +N  S      +   +N+ +L  G N +    P  L  L
Sbjct: 321 ISDISP--VSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANL 374

Query: 433 QKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGN 488
            ++  + L+   ++ +     ANV         + N  K  +  L         G+
Sbjct: 375 TRITQLGLNDQAWTNAPVNYKANVS--------IPNTVKNVTGALIAPATISDGGS 422

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  130 bits (328), Expect = 2e-32
 Identities = 95/449 (21%), Positives = 162/449 (36%), Gaps = 39/449 (8%)

Query: 2   NLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFP 61
             +R  I S  I  ++ L  L  ++ S+NQL    P  + NLT L  + +++N    + P
Sbjct: 52  QADRLGIKS--IDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP 107

Query: 62  LSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLK 121
           L++L N   L GL L   N    +     L  + L  L L+   ++      L     L+
Sbjct: 108 LANLTN---LTGLTLF-NNQITDIDPLKNL--TNLNRLELSSNTISD--ISALSGLTSLQ 159

Query: 122 YLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRG 181
            L    N++    P   L N   LE L + +N  S I  L K  +  L  L  + N    
Sbjct: 160 QLSFG-NQVTDLKP---LANLTTLERLDISSNKVSDISVLAKLTN--LESLIATNNQISD 213

Query: 182 KLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCF 241
             P  +   L  L  + ++ N  + +I  +   +  L+ LDL+ N  S   + + ++G  
Sbjct: 214 ITPLGI---LTNLDELSLNGNQLK-DIG-TLASLTNLTDLDLANNQIS---NLAPLSGLT 265

Query: 242 SLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNML 301
            L  L L  N       S    LT L +L    N         + +  +L  L +  N +
Sbjct: 266 KLTELKLGANQISN--ISPLAGLTALTNLELNENQLEDIS--PISNLKNLTYLTLYFNNI 321

Query: 302 SGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLS 361
           S   P  + + +  L+ L    N +       L NL  +  L    N++S     + NL+
Sbjct: 322 SDISP--VSSLTK-LQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTPLA-NLT 375

Query: 362 SVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHL 421
            +  L L   A                T+           P  I++  +     +  N  
Sbjct: 376 RITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALI--APATISDGGSYTEPDITWNLP 433

Query: 422 QGPIPDQLCQLQKLAMMDLSRNKFSGSIP 450
                +      +   +      FSG++ 
Sbjct: 434 SY-TNEVSYTFSQPVTIGKGTTTFSGTVT 461

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  117 bits (296), Expect = 4e-28
 Identities = 85/409 (20%), Positives = 152/409 (37%), Gaps = 43/409 (10%)

Query: 45  SLEYLDLSHNN-FEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTK 103
            L    ++ +     +F  ++LA        +L  + N     ++  L   Q+  L   +
Sbjct: 2   PLGSATITQDTPINQIFTDTALAE---KMKTVLG-KTNVTDTVSQTDL--DQVTTLQADR 55

Query: 104 CNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPK 163
             +     D + +  +L  ++ S+N+L    P   L+N  KL  +L+ NN  + I  L  
Sbjct: 56  LGIKS--IDGVEYLNNLTQINFSNNQLTDITP---LKNLTKLVDILMNNNQIADITPLAN 110

Query: 164 AKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDL 223
             +  L  L +  N     +       L  L  +++S N        +   +  L  L  
Sbjct: 111 LTN--LTGLTLFNNQITD-IDPLKN--LTNLNRLELSSNTISD--ISALSGLTSLQQLSF 163

Query: 224 SRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKD 283
                        +    +LE LD+S+N       S    LT L  L   NN  S     
Sbjct: 164 GNQ----VTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITPL 217

Query: 284 GLLSSTSLQVLDISNNMLSGHIPHWMGNFS--SELEILSMSKNHLEGNVPVQLNNLERLR 341
           G+L  T+L  L ++ N L       +G  +  + L  L ++ N +    P  L+ L +L 
Sbjct: 218 GIL--TNLDELSLNGNQLKD-----IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLT 268

Query: 342 ILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRI 401
            L +  N++S     +  L+++ +L L +N L  + P    +   L  L L  N  S   
Sbjct: 269 ELKLGANQISNISPLA-GLTALTNLELNENQLEDISPISNLK--NLTYLTLYFNNISDIS 325

Query: 402 PHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIP 450
           P  ++  + L+ L    N +       L  L  +  +    N+ S   P
Sbjct: 326 P--VSSLTKLQRLFFYNNKVSDVSS--LANLTNINWLSAGHNQISDLTP 370

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 80.8 bits (200), Expect = 3e-16
 Identities = 59/307 (19%), Positives = 115/307 (37%), Gaps = 51/307 (16%)

Query: 314 SELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNAL 373
           +E     + K ++   V     +L+++  L      +         L+++  ++   N L
Sbjct: 24  AEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSIDGVE-YLNNLTQINFSNNQL 80

Query: 374 NGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQ 433
             + P  L    KLV + + +N  +   P  +   +NL  L L  N +    P  L  L 
Sbjct: 81  TDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLT 134

Query: 434 KLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSN 493
            L  ++LS N  S                  D+   S L S      ++  S GN  +  
Sbjct: 135 NLNRLELSSNTIS------------------DISALSGLTS------LQQLSFGNQVTDL 170

Query: 494 TMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSD 553
                   L+ LE          ++ +     +I   + +  +  L  + NQ++   P  
Sbjct: 171 KPLAN---LTTLE---------RLDISSNKVSDISVLAKLTNLESLIATNNQISDITP-- 216

Query: 554 IGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNV 613
           +G L  +  L+L+ N L      + ++L  +  LD++ N+++   P  L+ L  L+   +
Sbjct: 217 LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKL 272

Query: 614 SYNNLSG 620
             N +S 
Sbjct: 273 GANQISN 279

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 50.0 bits (120), Expect = 2e-06
 Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 6/84 (7%)

Query: 537 TGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTG 596
           T L L  NQ++   P  +  L A+  L L+ N L    P   SNLK +  L + +N ++ 
Sbjct: 268 TELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISD 323

Query: 597 QIPPQLTALNFLSIFNVSYNNLSG 620
             P  +++L  L       N +S 
Sbjct: 324 ISP--VSSLTKLQRLFFYNNKVSD 345

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 49.6 bits (119), Expect = 2e-06
 Identities = 22/112 (19%), Positives = 43/112 (38%), Gaps = 6/112 (5%)

Query: 531 SNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDIS 590
           SN+  +T L L  N ++   P  +  L  +  L   NN +S     S +NL  I  L   
Sbjct: 306 SNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAG 361

Query: 591 YNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPDKGQFATFDESSYRGNPSL 642
           +N+++   P  L  L  ++   ++    +    +     +   +      +L
Sbjct: 362 HNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGAL 411

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 48.8 bits (117), Expect = 4e-06
 Identities = 24/93 (25%), Positives = 48/93 (51%), Gaps = 6/93 (6%)

Query: 531 SNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDIS 590
           +++  +T LDL+ NQ++   P  +  L  +  L L  N +S   P   + L  + +L+++
Sbjct: 240 ASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELN 295

Query: 591 YNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTP 623
            N+L    P  ++ L  L+   + +NN+S  +P
Sbjct: 296 ENQLEDISP--ISNLKNLTYLTLYFNNISDISP 326

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 47.7 bits (114), Expect = 1e-05
 Identities = 17/98 (17%), Positives = 34/98 (34%), Gaps = 6/98 (6%)

Query: 526 EIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIE 585
           +I+  + +       L    +T  +      L  +  L      +     +    L  + 
Sbjct: 16  QIFTDTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIK--SIDGVEYLNNLT 71

Query: 586 SLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTP 623
            ++ S N+LT   P  L  L  L    ++ N ++  TP
Sbjct: 72  QINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP 107

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 42.6 bits (101), Expect = 4e-04
 Identities = 14/89 (15%), Positives = 37/89 (41%), Gaps = 4/89 (4%)

Query: 531 SNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDIS 590
           +N+  +  L    NQ++   P  +  L  I  L L++ + + +     +N+ +  ++   
Sbjct: 350 ANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNV 407

Query: 591 YNKLTGQIPPQLTALNFLSIFNVSYNNLS 619
              L    P  ++     +  ++++N  S
Sbjct: 408 TGALI--APATISDGGSYTEPDITWNLPS 434

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  120 bits (303), Expect = 7e-30
 Identities = 72/410 (17%), Positives = 132/410 (32%), Gaps = 78/410 (19%)

Query: 13  ITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLE 72
           I    +L       +    +   +      L S+  L ++      +  +  L N     
Sbjct: 15  IFPDADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVASIQGIEYLTN----- 67

Query: 73  GLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVG 132
                                                          L+YL+L+ N++  
Sbjct: 68  -----------------------------------------------LEYLNLNGNQITD 80

Query: 133 NFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQ 192
             P   L N  KL  L +  N  + I  L    +  L  L ++ +N     P      L 
Sbjct: 81  ISP---LSNLVKLTNLYIGTNKITDISALQNLTN--LRELYLNEDNISDISPLAN---LT 132

Query: 193 KLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNN 252
           K+  +++  N    ++      M  L+ L ++ +        + +     L  L L+ N 
Sbjct: 133 KMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVK---DVTPIANLTDLYSLSLNYNQ 188

Query: 253 FEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNF 312
            E    S   +LT L +     N  +      + + T L  L I NN ++   P  + N 
Sbjct: 189 IED--ISPLASLTSLHYFTAYVNQITDIT--PVANMTRLNSLKIGNNKITDLSP--LANL 242

Query: 313 SSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNA 372
           S  L  L +  N +       + +L +L++L++  N++S     + NLS +  L L  N 
Sbjct: 243 SQ-LTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQISDISVLN-NLSQLNSLFLNNNQ 298

Query: 373 LNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQ 422
           L       +     L TL L  N  +   P  +   S +         ++
Sbjct: 299 LGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  118 bits (299), Expect = 2e-29
 Identities = 72/350 (20%), Positives = 132/350 (37%), Gaps = 31/350 (8%)

Query: 2   NLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFP 61
            L++  +    +   + L  +  L ++  ++  S+   I  LT+LEYL+L+ N    + P
Sbjct: 28  VLQKASVTD--VVTQEELESITKLVVAGEKVA-SIQG-IEYLTNLEYLNLNGNQITDISP 83

Query: 62  LSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLK 121
           LS+L    KL  L +    N +          + L  L L + N+  S    L +   + 
Sbjct: 84  LSNL---VKLTNLYIG--TNKIT-DISALQNLTNLRELYLNEDNI--SDISPLANLTKMY 135

Query: 122 YLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRG 181
            L+L  N  + +     L N   L  L +  +    +  +       L+ L ++ N    
Sbjct: 136 SLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVKDVTPIANLTD--LYSLSLNYNQIED 191

Query: 182 KLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCF 241
            +       L  L Y     N      P     M  L+ L +  N  +     S +    
Sbjct: 192 -ISPLAS--LTSLHYFTAYVNQITDITPV--ANMTRLNSLKIGNNKIT---DLSPLANLS 243

Query: 242 SLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNML 301
            L  L++  N       +   +LT+L+ L   +N  S      L + + L  L ++NN L
Sbjct: 244 QLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQL 299

Query: 302 SGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLS 351
                  +G  ++ L  L +S+NH+    P  L +L ++   D +   + 
Sbjct: 300 GNEDMEVIGGLTN-LTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  108 bits (272), Expect = 8e-26
 Identities = 65/332 (19%), Positives = 119/332 (35%), Gaps = 26/332 (7%)

Query: 119 HLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNN 178
                 L    +              +  L++     + I  +    +  L +L+++ N 
Sbjct: 23  EGIRAVLQKASVTDVVT---QEELESITKLVVAGEKVASIQGIEYLTN--LEYLNLNGNQ 77

Query: 179 FRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVT 238
                P +    L KL  + I  N    +I  +   +  L  L L+ +  S     S + 
Sbjct: 78  ITDISPLSN---LVKLTNLYIGTNKIT-DIS-ALQNLTNLRELYLNEDNISDI---SPLA 129

Query: 239 GCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISN 298
               +  L+L  N+      S   N+T L +L    +         + + T L  L ++ 
Sbjct: 130 NLTKMYSLNLGANHNLS-DLSPLSNMTGLNYLTVTESKVKDVT--PIANLTDLYSLSLNY 186

Query: 299 NMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSL 358
           N +    P  + + +S L   +   N +    P  + N+ RL  L I  N+++     + 
Sbjct: 187 NQIEDISP--LASLTS-LHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSPLA- 240

Query: 359 NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGG 418
           NLS +  L +  N ++ +    +    KL  LN+  N  S      +N  S L  L L  
Sbjct: 241 NLSQLTWLEIGTNQISDINA--VKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNN 296

Query: 419 NHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIP 450
           N L     + +  L  L  + LS+N  +   P
Sbjct: 297 NQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP 328

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  103 bits (260), Expect = 3e-24
 Identities = 61/336 (18%), Positives = 125/336 (37%), Gaps = 28/336 (8%)

Query: 120 LKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNF 179
              L      +   FP     +  +    +L+  S + ++   + +   +  L ++    
Sbjct: 2   AATLATLPAPINQIFP---DADLAEGIRAVLQKASVTDVVTQEELES--ITKLVVAGEKV 56

Query: 180 RGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTG 239
              +       L  L Y++++ N      P S   + +L+ L +  N  +     S +  
Sbjct: 57  A-SIQGIEY--LTNLEYLNLNGNQITDISPLS--NLVKLTNLYIGTNKIT---DISALQN 108

Query: 240 CFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNN 299
             +L  L L+ +N      S   NLT++  L    N+    +   L + T L  L ++ +
Sbjct: 109 LTNLRELYLNEDNISD--ISPLANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTES 165

Query: 300 MLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLN 359
            +    P  + N +  L  LS++ N +E   P  L +L  L       N+++     + N
Sbjct: 166 KVKDVTP--IANLTD-LYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITPVA-N 219

Query: 360 LSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGN 419
           ++ +  L +  N +  L P  L    +L  L +  N  S    + + + + L+ L +G N
Sbjct: 220 MTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSN 275

Query: 420 HLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFAN 455
            +       L  L +L  + L+ N+           
Sbjct: 276 QISDISV--LNNLSQLNSLFLNNNQLGNEDMEVIGG 309

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 62.9 bits (154), Expect = 9e-11
 Identities = 53/286 (18%), Positives = 101/286 (35%), Gaps = 35/286 (12%)

Query: 340 LRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSG 399
              L      ++  I    +L+      LQK ++  ++  E      +  L +     + 
Sbjct: 2   AATLATLPAPINQ-IFPDADLAEGIRAVLQKASVTDVVTQEELE--SITKLVVAGEKVAS 58

Query: 400 RIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSW 459
                I   +NL +L L GN +    P  L  L KL  + +  NK +        N+ + 
Sbjct: 59  IQG--IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKIT--DISALQNLTN- 111

Query: 460 RVGSDDVLNGSKLNSPELDEEIEFGSLGN----NRSSNTMFGMWRWLSALEKRAAIDERV 515
                  L    LN   + +     +L      N  +N        LS +         +
Sbjct: 112 -------LRELYLNEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTG-------L 157

Query: 516 EIEFAMKNR-YEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSI 574
                 +++  ++   +N+  +  L L+ NQ+    P  +  L ++       N ++   
Sbjct: 158 NYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDIT 215

Query: 575 PESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSG 620
           P   +N+  + SL I  NK+T   P  L  L+ L+   +  N +S 
Sbjct: 216 P--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD 257

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 56.4 bits (137), Expect = 1e-08
 Identities = 19/89 (21%), Positives = 41/89 (46%), Gaps = 4/89 (4%)

Query: 531 SNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDIS 590
            ++ ++  L++  NQ++    S +  L  + +L L+NN L     E    L  + +L +S
Sbjct: 262 KDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLS 319

Query: 591 YNKLTGQIPPQLTALNFLSIFNVSYNNLS 619
            N +T   P  L +L+ +   + +   + 
Sbjct: 320 QNHITDIRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 54.5 bits (132), Expect = 5e-08
 Identities = 20/90 (22%), Positives = 47/90 (52%), Gaps = 4/90 (4%)

Query: 531 SNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDIS 590
           +N++++T L++  NQ++    + +  L  +  LN+ +N +S       +NL  + SL ++
Sbjct: 240 ANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLN 295

Query: 591 YNKLTGQIPPQLTALNFLSIFNVSYNNLSG 620
            N+L  +    +  L  L+   +S N+++ 
Sbjct: 296 NNQLGNEDMEVIGGLTNLTTLFLSQNHITD 325

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  122 bits (307), Expect = 1e-29
 Identities = 103/578 (17%), Positives = 181/578 (31%), Gaps = 133/578 (23%)

Query: 18  NLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLS 77
           + T L+     S+ L   +P    N+ S      + + +E   P  +          L  
Sbjct: 9   SNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRD 67

Query: 78  TRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTW 137
             +   H              L L    L+ S P+      HL+ L  S N L    P  
Sbjct: 68  CLDRQAH-------------ELELNNLGLS-SLPELP---PHLESLVASCNSLT-ELPEL 109

Query: 138 LLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYM 197
                  L+ LL+ NN+   +  LP      L +L +S N    KLP             
Sbjct: 110 P----QSLKSLLVDNNNLKALSDLPPL----LEYLGVSNNQLE-KLP------------- 147

Query: 198 DISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQF 257
                               L ++D+  N         +     SLE +   NN  E   
Sbjct: 148 -------------ELQNSSFLKIIDVDNNSLK-----KLPDLPPSLEFIAAGNNQLE--E 187

Query: 258 FSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELE 317
             E  NL  L  +Y +NN+   K+ D      SL+ +   NN+L   +P  + N    L 
Sbjct: 188 LPELQNLPFLTAIYADNNSLK-KLPDLP---LSLESIVAGNNILE-ELPE-LQNLPF-LT 240

Query: 318 ILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLI 377
            +    N L+  +P    +LE    L++ +N L+       +L+ ++      + L+ L 
Sbjct: 241 TIYADNNLLK-TLPDLPPSLEA---LNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELP 296

Query: 378 PGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAM 437
           P        L  LN   N     I    +   +L  L +  N L   +P    +L++L  
Sbjct: 297 P-------NLYYLNASSN----EIRSLCDLPPSLEELNVSNNKLIE-LPALPPRLERL-- 342

Query: 438 MDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFG 497
              S N  +  +P    N+          L+       E  +     S+ + R ++ +  
Sbjct: 343 -IASFNHLA-EVPELPQNLKQ--------LHVEYNPLREFPDIP--ESVEDLRMNSHLAE 390

Query: 498 MWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQL 557
           +      L++                               L +  N L  E P     +
Sbjct: 391 VPELPQNLKQ-------------------------------LHVETNPLR-EFPDIPESV 418

Query: 558 QAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLT 595
           +    L +++  +      +      +E     ++   
Sbjct: 419 E---DLRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 98.9 bits (247), Expect = 5e-22
 Identities = 93/453 (20%), Positives = 156/453 (34%), Gaps = 95/453 (20%)

Query: 168 FLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNY 227
           FL       +N   ++P      ++       + + +E N P   GE +E+++  L    
Sbjct: 12  FLQEPLRHSSNLT-EMPVEAE-NVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCL 69

Query: 228 FSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLS 287
                             L+L+N         E      L  L    N+ + ++ +   S
Sbjct: 70  ------------DRQAHELELNNLGL--SSLPE--LPPHLESLVASCNSLT-ELPELPQS 112

Query: 288 STSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISE 347
             SL V + +   LS   P         LE L +S N LE  +P +L N   L+I+D+  
Sbjct: 113 LKSLLVDNNNLKALSDLPPL--------LEYLGVSNNQLE-KLP-ELQNSSFLKIIDVDN 162

Query: 348 NRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINE 407
           N L           S+E ++   N L  L   EL     L  +   +N+   ++P     
Sbjct: 163 NSLKKLPDL---PPSLEFIAAGNNQLEELP--ELQNLPFLTAIYADNNSLK-KLPDLP-- 214

Query: 408 HSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVL 467
             +L  ++ G N L+     +L  L  L  +    N    ++P    ++ +        +
Sbjct: 215 -LSLESIVAGNNILE--ELPELQNLPFLTTIYADNNLLK-TLPDLPPSLEALN------V 264

Query: 468 NGSKLNS-PELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYE 526
             + L   PEL + + F  +  N  S         LS L                     
Sbjct: 265 RDNYLTDLPELPQSLTFLDVSENIFSG--------LSEL--------------------- 295

Query: 527 IYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIES 586
                    +  L+ S N++   +      L+    LN+SNN L   +P     L   E 
Sbjct: 296 ------PPNLYYLNASSNEIR-SLCDLPPSLEE---LNVSNNKLI-ELPALPPRL---ER 341

Query: 587 LDISYNKLTGQIPPQLTALNFLSIFNVSYNNLS 619
           L  S+N L  ++P     L  L   +V YN L 
Sbjct: 342 LIASFNHLA-EVPELPQNLKQL---HVEYNPLR 370

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 58.1 bits (141), Expect = 5e-09
 Identities = 48/285 (16%), Positives = 86/285 (30%), Gaps = 64/285 (22%)

Query: 335 NNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRD 394
            +   L+      + L+     + N+ S        +      P       ++    LRD
Sbjct: 8   VSNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRD 67

Query: 395 NTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFA 454
                              L L    L   +P+    L+ L     S N  +  +P    
Sbjct: 68  C-----------LDRQAHELELNNLGLS-SLPELPPHLESL---VASCNSLT-ELPELPQ 111

Query: 455 NVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDER 514
           ++ S  V +    N   L   +L   +E+  + NN+           L  L         
Sbjct: 112 SLKSLLVDN---NNLKAL--SDLPPLLEYLGVSNNQ-----------LEKLP-------- 147

Query: 515 VEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSI 574
                      E+ N S +     +D+  N L  ++P     L+    +   NN L   +
Sbjct: 148 -----------ELQNSSFL---KIIDVDNNSLK-KLPDLPPSLEF---IAAGNNQLE-EL 188

Query: 575 PESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLS 619
           PE   NL  + ++    N L  ++P    +L  +       N L 
Sbjct: 189 PE-LQNLPFLTAIYADNNSLK-KLPDLPLSLESI---VAGNNILE 228

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 52.3 bits (126), Expect = 3e-07
 Identities = 37/234 (15%), Positives = 73/234 (31%), Gaps = 65/234 (27%)

Query: 401 IPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWR 460
           I  +   ++ L+  L   ++L   +P +   ++       + +++  + PP         
Sbjct: 3   INPRNVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQRE-- 59

Query: 461 VGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFA 520
           +    + +     + EL+       L N             LS+L               
Sbjct: 60  MAVSRLRDCLDRQAHELE-------LNNLG-----------LSSLP-------------- 87

Query: 521 MKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPE---- 576
                          +  L  SCN LT E+P     L+++L  N +  +LS   P     
Sbjct: 88  ----------ELPPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPPLLEYL 136

Query: 577 -----------SFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLS 619
                         N   ++ +D+  N L  ++P    +L F+       N L 
Sbjct: 137 GVSNNQLEKLPELQNSSFLKIIDVDNNSLK-KLPDLPPSLEFI---AAGNNQLE 186

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 51.5 bits (124), Expect = 6e-07
 Identities = 34/182 (18%), Positives = 60/182 (32%), Gaps = 27/182 (14%)

Query: 286 LSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDI 345
           +S+T LQ     ++ L+  +P    N  S       + +  E N P        + +  +
Sbjct: 8   VSNTFLQEPLRHSSNLT-EMPVEAENVKS-KTEYYNAWSEWERNAPPGNGEQREMAVSRL 65

Query: 346 SENRLSGPIASSLNLS------------SVEHLSLQKNALNGLIPGELFRSCKLVTLNLR 393
            +       A  L L+             +E L    N+L  L P        L+  N  
Sbjct: 66  RDCLDRQ--AHELELNNLGLSSLPELPPHLESLVASCNSLTEL-PELPQSLKSLLVDNNN 122

Query: 394 DNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCF 453
               S   P        L +L +  N L+  +P+ L     L ++D+  N     +P   
Sbjct: 123 LKALSDLPP-------LLEYLGVSNNQLEK-LPE-LQNSSFLKIIDVDNNSLK-KLPDLP 172

Query: 454 AN 455
            +
Sbjct: 173 PS 174

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 46.9 bits (112), Expect = 2e-05
 Identities = 25/98 (25%), Positives = 39/98 (39%), Gaps = 18/98 (18%)

Query: 539 LDLSCNQLTGEIPSDIGQLQAILA-------------LNLSNNSLSGSIPESFSNLKMIE 585
              + ++     P   G+ + +               L L+N  LS S+PE   +L   E
Sbjct: 39  YYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS-SLPELPPHL---E 94

Query: 586 SLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTP 623
           SL  S N LT ++P    +L  L + N +   LS   P
Sbjct: 95  SLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPP 131

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  120 bits (302), Expect = 2e-29
 Identities = 68/334 (20%), Positives = 126/334 (37%), Gaps = 24/334 (7%)

Query: 18  NLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLS 77
            L   KI+   ++ +     +++ +   +E L+L+    E      + A    ++ L + 
Sbjct: 43  TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMG 101

Query: 78  TRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTW 137
             N   ++    +     L VL L + +L+        +   L  L +S+N L       
Sbjct: 102 -FNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDD 159

Query: 138 LLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYM 197
             +    L+ L L +N    +  +  +    L H ++S N     L      I   +  +
Sbjct: 160 TFQATTSLQNLQLSSNR---LTHVDLSLIPSLFHANVSYNLLS-TLA-----IPIAVEEL 210

Query: 198 DISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQF 257
           D S N     +        EL++L L  N  +     + +     L  +DLS N  E   
Sbjct: 211 DASHNSIN-VVR--GPVNVELTILKLQHNNLT---DTAWLLNYPGLVEVDLSYNELEKIM 264

Query: 258 FSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELE 317
           +  ++ + RL  LY  NN     +        +L+VLD+S+N L  H+      F   LE
Sbjct: 265 YHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDR-LE 321

Query: 318 ILSMSKNHLEGNVPVQLNNLERLRILDISENRLS 351
            L +  N +     ++L+    L+ L +S N   
Sbjct: 322 NLYLDHNSIV---TLKLSTHHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  112 bits (281), Expect = 1e-26
 Identities = 73/391 (18%), Positives = 139/391 (35%), Gaps = 27/391 (6%)

Query: 16  LKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLL 75
           L+       + I     +         L + + +   ++      P + L +  ++E L 
Sbjct: 17  LQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLN 75

Query: 76  LSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFP 135
           L+       + T  +     +  L +    +    P    +   L  L L  N L  + P
Sbjct: 76  LN-DLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLP 133

Query: 136 TWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLM 195
             +  N PKL  L + NN+   I          L +L +S N     +  ++   +  L 
Sbjct: 134 RGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDLSL---IPSLF 189

Query: 196 YMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCF-SLELLDLSNNNFE 254
           + ++S N        +      +  LD S N  +      V       L +L L +NN  
Sbjct: 190 HANVSYNLLS-----TLAIPIAVEELDASHNSIN-----VVRGPVNVELTILKLQHNNLT 239

Query: 255 GQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSS 314
               +  +N   L  +    N     +    +    L+ L ISNN L   +  +     +
Sbjct: 240 D--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPT 296

Query: 315 ELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALN 374
            L++L +S NHL  +V       +RL  L +  N +   +  S    ++++L+L  N  +
Sbjct: 297 -LKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLKLS-THHTLKNLTLSHNDWD 352

Query: 375 GLIPGELFRSCKLVTLNLRDNTFSGRIPHQI 405
                 LFR+  +    + D     +I +Q+
Sbjct: 353 CNSLRALFRN--VARPAVDDADQHCKIDYQL 381

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  107 bits (268), Expect = 5e-25
 Identities = 64/334 (19%), Positives = 117/334 (35%), Gaps = 45/334 (13%)

Query: 119 HLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNN 178
           + K +   ++ +    P  LL +  ++E+L L +     I     A    +  L +  N 
Sbjct: 46  NQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA 104

Query: 179 FRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSA-GEMKELSLLDLSRNYFSGGLSQSVV 237
            R  LP ++   +  L  + + +N    ++P        +L+ L +S N     +     
Sbjct: 105 IR-YLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLER-IEDDTF 161

Query: 238 TGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDIS 297
               SL+ L LS+N       S    +  L H     N  S      L    +++ LD S
Sbjct: 162 QATTSLQNLQLSSNRLTHVDLS---LIPSLFHANVSYNLLST-----LAIPIAVEELDAS 213

Query: 298 NNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASS 357
           +N ++  +    G  + EL IL +  N+L  +    L N   L  +D+S N L       
Sbjct: 214 HNSIN-VVR---GPVNVELTILKLQHNNLT-DTAW-LLNYPGLVEVDLSYNELE------ 261

Query: 358 LNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLG 417
                     +  +    +         +L  L + +N     +         L+ L L 
Sbjct: 262 ---------KIMYHPFVKMQ--------RLERLYISNNRLV-ALNLYGQPIPTLKVLDLS 303

Query: 418 GNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPP 451
            NHL   +     Q  +L  + L  N    ++  
Sbjct: 304 HNHLLH-VERNQPQFDRLENLYLDHNSIV-TLKL 335

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 99.7 bits (249), Expect = 1e-22
 Identities = 67/414 (16%), Positives = 133/414 (32%), Gaps = 70/414 (16%)

Query: 242 SLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSS-TSLQVLDISNNM 300
               + +     +  F  E + L   + + F+N+    K+   LL S   +++L++++  
Sbjct: 22  VFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQ 80

Query: 301 LSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSG-PIASSLN 359
           +   I  +   ++  ++ L M  N +    P    N+  L +L +  N LS  P     N
Sbjct: 81  IE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHN 139

Query: 360 LSSVEHLSLQKNALNGLIPGELFRSC-KLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGG 418
              +  LS+  N L   I  + F++   L  L L  N  +  +   +    +L    +  
Sbjct: 140 TPKLTTLSMSNNNLER-IEDDTFQATTSLQNLQLSSNRLT-HVDLSLI--PSLFHANVSY 195

Query: 419 NHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELD 478
           N L       L     +  +D S N  +    P               L   KL    L 
Sbjct: 196 NLLS-----TLAIPIAVEELDASHNSINVVRGPVNVE-----------LTILKLQHNNLT 239

Query: 479 EEIEFGS--------LGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNG 530
           +     +        L  N     M+  +  +  LE+                       
Sbjct: 240 DTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLER----------------------- 276

Query: 531 SNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDIS 590
                   L +S N+L   +      +  +  L+LS+N L   +  +      +E+L + 
Sbjct: 277 --------LYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLD 326

Query: 591 YNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPDKGQFATFDESSYRGNPSLCA 644
           +N +   +       + L    +S+N+       +  F      +       C 
Sbjct: 327 HNSIV-TLKLS--THHTLKNLTLSHNDWDC-NSLRALFRNVARPAVDDADQHCK 376

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 88.9 bits (221), Expect = 5e-19
 Identities = 53/292 (18%), Positives = 105/292 (35%), Gaps = 26/292 (8%)

Query: 169 LHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSA-GEMKELSLLDLSRNY 227
            + + I              + L     +    +     +P +     +++ LL+L+   
Sbjct: 23  FYDVHIDMQTQDVYFGFE-DITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQ 80

Query: 228 FSGGLSQSVVTGCFSLELLDLSNNN---FEGQFFSEYMNLTRLRHLYFENNNFSGKIKDG 284
               +         +++ L +  N         F    N+  L  L  E N+ S  +  G
Sbjct: 81  IEE-IDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQ---NVPLLTVLVLERNDLS-SLPRG 135

Query: 285 LLSS-TSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRIL 343
           +  +   L  L +SNN L   I       ++ L+ L +S N L     V L+ +  L   
Sbjct: 136 IFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTH---VDLSLIPSLFHA 191

Query: 344 DISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPH 403
           ++S N LS    +     +VE L    N++N  + G +     L  L L+ N  +     
Sbjct: 192 NVSYNLLS----TLAIPIAVEELDASHNSINV-VRGPVNVE--LTILKLQHNNLTD--TA 242

Query: 404 QINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFAN 455
            +  +  L  + L  N L+  +     ++Q+L  + +S N+   ++      
Sbjct: 243 WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQP 293

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 83.9 bits (208), Expect = 2e-17
 Identities = 51/342 (14%), Positives = 124/342 (36%), Gaps = 26/342 (7%)

Query: 281 IKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERL 340
           I   L        + I       +        ++  +I++   + +       L++  ++
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNN-QKIVTFKNSTMRKLPAALLDSFRQV 71

Query: 341 RILDISENRLSG-PIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSG 399
            +L++++ ++      +     +++ L +  NA+  L P        L  L L  N  S 
Sbjct: 72  ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS- 130

Query: 400 RIPHQINEH-SNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLS 458
            +P  I  +   L  L +  N+L+    D       L  + LS N+ +        ++  
Sbjct: 131 SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFH 190

Query: 459 WRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIE 518
                   ++ + L++  +   +E     +N            ++ +     ++    ++
Sbjct: 191 AN------VSYNLLSTLAIPIAVEELDASHNS-----------INVVRGPVNVELT-ILK 232

Query: 519 FAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDI-GQLQAILALNLSNNSLSGSIPES 577
               N  +     N   +  +DLS N+L  +I      ++Q +  L +SNN L  ++   
Sbjct: 233 LQHNNLTDTAWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLV-ALNLY 290

Query: 578 FSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLS 619
              +  ++ LD+S+N L   +       + L    + +N++ 
Sbjct: 291 GQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV 331

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 77.0 bits (190), Expect = 4e-15
 Identities = 61/254 (24%), Positives = 92/254 (36%), Gaps = 25/254 (9%)

Query: 2   NLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFP 61
            LERN + S       N  +L  L +S+N L           TSL+ L LS N       
Sbjct: 123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD 181

Query: 62  LSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLK 121
           LS + +   L    +S   N L            +  L  +  ++N       +    L 
Sbjct: 182 LSLIPS---LFHANVS--YNLLSTLAIP----IAVEELDASHNSINVVRGPVNV---ELT 229

Query: 122 YLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRG 181
            L L HN L  +     L N P L  + L  N    I+  P  K   L  L IS N    
Sbjct: 230 ILKLQHNNLT-DTAW--LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV- 285

Query: 182 KLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCF 241
            L    G  +  L  +D+S N    ++  +  +   L  L L  N        ++     
Sbjct: 286 ALN-LYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-----TLKLSTH 338

Query: 242 -SLELLDLSNNNFE 254
            +L+ L LS+N+++
Sbjct: 339 HTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 44.3 bits (105), Expect = 1e-04
 Identities = 42/285 (14%), Positives = 89/285 (31%), Gaps = 34/285 (11%)

Query: 343 LDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIP 402
           +   +       ++         + +     +     E         +  +++T      
Sbjct: 3   VKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPA 62

Query: 403 HQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPP-CFANVLSWRV 461
             ++    +  L L    ++            +  + +  N     +PP  F NV    V
Sbjct: 63  ALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTV 121

Query: 462 GSDDVLNGSKLNSPELDEEIEFG-------SLGNNRSSNTMFGMWRWLSALEKRAAIDER 514
                L  + L+S  L   I          S+ NN         ++  ++L       + 
Sbjct: 122 LV---LERNDLSS--LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSL-------QN 169

Query: 515 VEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSI 574
           +++     NR    + S +  +   ++S N L+      +    A+  L+ S+NS++   
Sbjct: 170 LQLSS---NRLTHVDLSLIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSINVVR 221

Query: 575 PESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLS 619
                 L     L + +N LT      L     L   ++SYN L 
Sbjct: 222 GPVNVELT---ILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELE 261

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  119 bits (300), Expect = 1e-28
 Identities = 87/404 (21%), Positives = 152/404 (37%), Gaps = 35/404 (8%)

Query: 18  NLTRLKILDISSNQLNGSLP--SVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLL 75
               LK LD+S N  + +LP      N++ L++L LS  + E    +  +A+ +  + LL
Sbjct: 88  PTVNLKHLDLSFNAFD-ALPICKEFGNMSQLKFLGLSTTHLEKS-SVLPIAHLNISKVLL 145

Query: 76  LSTRNNTLHVKTEN--WLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHN----- 128
           +           E      T  L ++  T    +      +    +L+  ++        
Sbjct: 146 VLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNK 205

Query: 129 -----KLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKL 183
                 ++    T    +N  L  +    NSF  ILQL    H  + +  IS    +G+L
Sbjct: 206 CSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQL--VWHTTVWYFSISNVKLQGQL 263

Query: 184 PHNM----GVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTG 239
                   G  L+ L    +  + F     Y       +++ + + +      ++ V   
Sbjct: 264 DFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSG-----TRMVHML 318

Query: 240 CFS----LELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFS--GKIKDGLLSSTSLQV 293
           C S       LD SNN      F    +LT L  L  + N      KI +      SLQ 
Sbjct: 319 CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQ 378

Query: 294 LDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGP 353
           LDIS N +S        +++  L  L+MS N L   +   L    R+++LD+  N++   
Sbjct: 379 LDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKIKSI 436

Query: 354 IASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTF 397
               + L +++ L++  N L  +  G   R   L  + L  N +
Sbjct: 437 PKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  110 bits (276), Expect = 1e-25
 Identities = 89/465 (19%), Positives = 165/465 (35%), Gaps = 54/465 (11%)

Query: 2   NLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFP 61
           N+ +N+I     + + +L++L+IL IS N++     SV      LEYLDLSHN       
Sbjct: 27  NISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVK-IS 85

Query: 62  LSSLANHSKLEGLLLSTRNNTLHVKTENWLPTS--QLIVLGLTKCNLNGSYPDFLLHQYH 119
                N   L+ L LS   N            +  QL  LGL+  +L  S    + H   
Sbjct: 86  CHPTVN---LKHLDLS--FNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNI 140

Query: 120 LKYLDLSHNKLVGNFPTWLLRN--NPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCN 177
            K L +             L++     L ++   N  F  IL +       L   +I C 
Sbjct: 141 SKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCV 200

Query: 178 NFRGKLPHNMGVILQK--------------------------------LMYMDISKNCFE 205
               K  + + ++ +                                 + Y  IS    +
Sbjct: 201 LEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQ 260

Query: 206 GNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCF----SLELLDLSNNNFEGQFFSEY 261
           G + +   +    SL  LS +     +     +  +    ++ + + + +          
Sbjct: 261 GQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCP 320

Query: 262 MNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFS--SELEIL 319
             ++   HL F NN  +  + +     T L+ L +  N L   +       +    L+ L
Sbjct: 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK-ELSKIAEMTTQMKSLQQL 379

Query: 320 SMSKNHLEGNVPVQL-NNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIP 378
            +S+N +  +      +  + L  L++S N L+  I   L    ++ L L  N +  + P
Sbjct: 380 DISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL-PPRIKVLDLHSNKIKSI-P 437

Query: 379 GELFRSCKLVTLNLRDNTFSGRIPHQINEH-SNLRFLLLGGNHLQ 422
            ++ +   L  LN+  N     +P  I +  ++L+ + L  N   
Sbjct: 438 KQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 481

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  104 bits (262), Expect = 9e-24
 Identities = 78/454 (17%), Positives = 159/454 (35%), Gaps = 31/454 (6%)

Query: 20  TRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTR 79
            +  IL+IS N ++    S I +L+ L  L +SHN  +    +S    + +LE L LS  
Sbjct: 21  QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQY-LDISVFKFNQELEYLDLS-- 77

Query: 80  NNTLHVKTENWLPTSQLIVLGLTKCNLNG-SYPDFLLHQYHLKYLDLSHNKLVGNFPTWL 138
           +N L   + +      L  L L+    +         +   LK+L LS   L        
Sbjct: 78  HNKLVKISCHPT--VNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHL-EKSSVLP 134

Query: 139 LRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDI--SCNNFRGKLPHNMGVILQKLMY 196
           + +    +VLL+   ++         +      L I    N     +       +  L  
Sbjct: 135 IAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLEL 194

Query: 197 MDISKNCFEGNIPYSAGEMKELSLLDLSRN--YFSGGLSQSVVTGCF------SLELLDL 248
            +I     +    Y    + +L       N    +   + +            ++    +
Sbjct: 195 SNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSI 254

Query: 249 SNNNFEGQFFSEYM-----NLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSG 303
           SN   +GQ           +L  L      ++ F           +++ + + + +    
Sbjct: 255 SNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRM 314

Query: 304 HIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSG-PIASSL--NL 360
            +     +  S    L  S N L   V     +L  L  L +  N+L      + +   +
Sbjct: 315 -VHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQM 373

Query: 361 SSVEHLSLQKNALNGLIPGELFRSC-KLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGN 419
            S++ L + +N+++             L++LN+  N  +  I   +     ++ L L  N
Sbjct: 374 KSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSN 431

Query: 420 HLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCF 453
            ++  IP Q+ +L+ L  ++++ N+   S+P   
Sbjct: 432 KIKS-IPKQVVKLEALQELNVASNQLK-SVPDGI 463

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 86.1 bits (213), Expect = 1e-17
 Identities = 81/514 (15%), Positives = 159/514 (30%), Gaps = 97/514 (18%)

Query: 119 HLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGI-----LQLPKAKHDFLHHLD 173
               L++S N +     T  + +  KL +L++ +N    +         +     L +LD
Sbjct: 22  KTTILNISQNYIS-ELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQE-----LEYLD 75

Query: 174 ISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLS 233
           +S N             L K+                S      L  LDLS N F     
Sbjct: 76  LSHNK------------LVKI----------------SCHPTVNLKHLDLSFNAFDALPI 107

Query: 234 QSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQV 293
                    L+ L LS  + E        +L   + L      +  K     L   + + 
Sbjct: 108 CKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTES 167

Query: 294 LDI--SNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLER-----------L 340
           L I    N     I        + LE+ ++     +      L+ L +           L
Sbjct: 168 LHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTL 227

Query: 341 RILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSC-----KLVTLNLRDN 395
             ++ + N     +   +  ++V + S+    L G +    F         L    +  +
Sbjct: 228 NNIETTWNSFIRILQL-VWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSD 286

Query: 396 TFSGRIPHQINEHSNLRFLLLGGNHLQG---PIPDQLCQLQKLAMMDLSRNKFSGSIPPC 452
            F     +     SN+       +  +      P ++     L   D S N  + ++   
Sbjct: 287 VFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHL---DFSNNLLTDTVFEN 343

Query: 453 FANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSL---------GNNRSSNTMFGMWRWLS 503
             ++          L  ++L       E+    +          N+ S +   G   W  
Sbjct: 344 CGHLTELETLI---LQMNQLKELSKIAEM-TTQMKSLQQLDISQNSVSYDEKKGDCSWTK 399

Query: 504 ALEK----RAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQA 559
           +L         + + +      +             +  LDL  N++   IP  + +L+A
Sbjct: 400 SLLSLNMSSNILTDTIFRCLPPR-------------IKVLDLHSNKIK-SIPKQVVKLEA 445

Query: 560 ILALNLSNNSLSGSIPE-SFSNLKMIESLDISYN 592
           +  LN+++N L  S+P+  F  L  ++ + +  N
Sbjct: 446 LQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 78.0 bits (192), Expect = 3e-15
 Identities = 72/426 (16%), Positives = 147/426 (34%), Gaps = 44/426 (10%)

Query: 221 LDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGK 280
           L++S+NY S  L  S +     L +L +S+N  +    S +     L +L   +N     
Sbjct: 26  LNISQNYISE-LWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKI 84

Query: 281 IKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSS--ELEILSMSKNHLEGNVPVQLNNLE 338
                    +L+ LD+S N     +P     F +  +L+ L +S  HLE +  + + +L 
Sbjct: 85  SCHPT---VNLKHLDLSFNAFD-ALPI-CKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLN 139

Query: 339 RLRILDISENRLSGPIA----SSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRD 394
             ++L +                 N  S+  +       + ++   +     L   N++ 
Sbjct: 140 ISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKC 199

Query: 395 NTFSGRIPHQINEHSNL------RFLLLGGNHLQGPIPDQLCQLQK---LAMMDLSRNKF 445
                +  + ++  + L        L L           ++ QL     +    +S  K 
Sbjct: 200 VLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKL 259

Query: 446 SGSIPPCFAN-------VLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGM 498
            G +     +        LS      DV    +    E+   +   +   + +       
Sbjct: 260 QGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC 319

Query: 499 WRWLSALEKRAAIDERVEIEFAMKNRYEIYNG--SNVNRVTGLDLSCNQLT--GEIPSDI 554
              +S             ++F+     +       ++  +  L L  NQL    +I    
Sbjct: 320 PSKISPFL---------HLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMT 370

Query: 555 GQLQAILALNLSNNSLSGSIP-ESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNV 613
            Q++++  L++S NS+S        S  K + SL++S N LT  I   L     + + ++
Sbjct: 371 TQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPR--IKVLDL 428

Query: 614 SYNNLS 619
             N + 
Sbjct: 429 HSNKIK 434

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 70.3 bits (172), Expect = 8e-13
 Identities = 59/356 (16%), Positives = 117/356 (32%), Gaps = 20/356 (5%)

Query: 288 STSLQVLDISNNMLSGHIPHWMGNFS--SELEILSMSKNHLEGNVPVQLNNLERLRILDI 345
           S    +L+IS N +S  +     +    S+L IL +S N ++          + L  LD+
Sbjct: 20  SQKTTILNISQNYIS-ELWT--SDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDL 76

Query: 346 SENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSC-KLVTLNLRDNTFSGRIPHQ 404
           S N+L     S     +++HL L  NA + L   + F +  +L  L L            
Sbjct: 77  SHNKLVK--ISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLP 134

Query: 405 I-NEHSNLRFLLLGGNHLQGPIPDQLCQL--QKLAMMDLSRNKFSGSIPPCFANVLSWRV 461
           I + + +   L+LG  + +   P+ L     + L ++  +  +F   +      V +  +
Sbjct: 135 IAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLEL 194

Query: 462 GSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAM 521
            +   +      S  L    +  +     +         W S +     +       F++
Sbjct: 195 SNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSI 254

Query: 522 KN---------RYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSG 572
            N         R   Y+G+++  ++   +  +               +   N + +    
Sbjct: 255 SNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRM 314

Query: 573 SIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPDKGQF 628
                 S +     LD S N LT  +      L  L    +  N L   +      
Sbjct: 315 VHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMT 370

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 66.4 bits (162), Expect = 2e-11
 Identities = 37/183 (20%), Positives = 74/183 (40%), Gaps = 11/183 (6%)

Query: 1   MNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMF 60
            N   +      + C   ++    LD S+N L  ++     +LT LE L L  N  + + 
Sbjct: 305 KNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELS 364

Query: 61  PLSSL-ANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYH 119
            ++ +      L+ L +S  + +   K  +   T  L+ L ++   L  +    L  +  
Sbjct: 365 KIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPR-- 422

Query: 120 LKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLH---HLDISC 176
           +K LDL  NK+  + P  +++    L+ L + +N    +  +P    D L     + +  
Sbjct: 423 IKVLDLHSNKIK-SIPKQVVK-LEALQELNVASNQ---LKSVPDGIFDRLTSLQKIWLHT 477

Query: 177 NNF 179
           N +
Sbjct: 478 NPW 480

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  118 bits (298), Expect = 2e-28
 Identities = 75/424 (17%), Positives = 135/424 (31%), Gaps = 51/424 (12%)

Query: 18  NLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLS 77
           N  R KI  ++ + L  +L S+  +  +++ LDLS N    +   + LA  +KLE L LS
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISA-ADLAPFTKLELLNLS 66

Query: 78  TRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTW 137
             +N L+                           D       L+ LDL++N +       
Sbjct: 67  --SNVLY------------------------ETLDL-ESLSTLRTLDLNNNYVQE----- 94

Query: 138 LLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYM 197
            L   P +E L   NN+ S +     ++     ++ ++ N     L         ++ Y+
Sbjct: 95  -LLVGPSIETLHAANNNISRV---SCSRGQGKKNIYLANNKIT-MLRDLDEGCRSRVQYL 149

Query: 198 DISKNCFEG-NIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCF--SLELLDLSNNNFE 254
           D+  N  +  N    A     L  L+L  N+        V        L+ LDLS+N   
Sbjct: 150 DLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-----DVKGQVVFAKLKTLDLSSNKLA 204

Query: 255 GQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLS-GHIPHWMGNFS 313
                E+ +   +  +   NN     I+  L  S +L+  D+  N    G +  +     
Sbjct: 205 -FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQ 262

Query: 314 SELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNAL 373
               +   +   L G    +                L  P A  L     +  +L     
Sbjct: 263 RVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQG 322

Query: 374 NGL--IPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQ 431
           +    +  E     +   ++     +   I            L      L   + +    
Sbjct: 323 SETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRA 382

Query: 432 LQKL 435
             +L
Sbjct: 383 HAEL 386

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  116 bits (292), Expect = 1e-27
 Identities = 74/458 (16%), Positives = 144/458 (31%), Gaps = 49/458 (10%)

Query: 191 LQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSN 250
             +     ++ +  +  +         +  LDLS N  S  +S + +     LELL+LS+
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQ-ISAADLAPFTKLELLNLSS 67

Query: 251 NNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMG 310
           N        +  +L+ LR L   NN         LL   S++ L  +NN +S  +     
Sbjct: 68  NVLYE--TLDLESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNNIS-RVS--CS 117

Query: 311 NFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSG--PIASSLNLSSVEHLSL 368
                 + + ++ N +     +      R++ LD+  N +        + +  ++EHL+L
Sbjct: 118 RGQG-KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176

Query: 369 QKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQ 428
           Q N +   + G++  + KL TL+L  N  +  +  +    + + ++ L  N L   I   
Sbjct: 177 QYNFIYD-VKGQVVFA-KLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVL-IEKA 232

Query: 429 LCQLQKLAMMDLSRNKFS-GSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLG 487
           L   Q L   DL  N F  G++   F+     +  +   +      + E       G  G
Sbjct: 233 LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYG 292

Query: 488 NNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLT 547
                +        L AL                                 L    ++  
Sbjct: 293 AYCCEDLPAPFADRLIAL--------------------------KRKEHALLSGQGSETE 326

Query: 548 GEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIP---PQLTA 604
             +  +         ++         I +     +   +L+     L  Q+         
Sbjct: 327 -RLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAE 385

Query: 605 LNFLSIFNVSYNNLSGRTPDKGQFATFDESSYRGNPSL 642
           L+      V    L   T ++           R     
Sbjct: 386 LDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMY 423

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  115 bits (289), Expect = 2e-27
 Identities = 60/494 (12%), Positives = 130/494 (26%), Gaps = 54/494 (10%)

Query: 35  SLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTS 94
           ++  +  N    +   ++ ++ +     S   +   ++ L LS   N             
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQ-ALASLRQSAWNVKELDLS--GN------------- 44

Query: 95  QLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNS 154
                      L+      L     L+ L+LS N L        L +   L  L L NN 
Sbjct: 45  ----------PLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNY 91

Query: 155 FSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGE 214
              +L  P      +  L  + NN   ++  + G   + +    ++ N          G 
Sbjct: 92  VQELLVGPS-----IETLHAANNNIS-RVSCSRGQGKKNI---YLANNKITMLRDLDEGC 142

Query: 215 MKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFEN 274
              +  LDL  N         +     +LE L+L  N          +   +L+ L   +
Sbjct: 143 RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD--VKGQVVFAKLKTLDLSS 200

Query: 275 NNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLE-GNVPVQ 333
           N  +  +     S+  +  + + NN L   I   +    + LE   +  N    G +   
Sbjct: 201 NKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQN-LEHFDLRGNGFHCGTLRDF 257

Query: 334 LNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLR 393
            +  +R++ +     +      +    +              L      R   L      
Sbjct: 258 FSKNQRVQTVAKQTVK-KLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHA 316

Query: 394 DNTFSGRIPHQINE----HSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSI 449
             +  G    ++       +  R +       +  I     + Q    ++  +      +
Sbjct: 317 LLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQV 376

Query: 450 PPCFANVLS-----WRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSA 504
                          +      L  +      L                        +  
Sbjct: 377 SNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRD 436

Query: 505 LEKRAAIDERVEIE 518
            +     + ++  E
Sbjct: 437 WDMYQHKETQLAEE 450

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 74.9 bits (184), Expect = 3e-14
 Identities = 40/273 (14%), Positives = 88/273 (32%), Gaps = 38/273 (13%)

Query: 357 SLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLL 416
             N +  +   +  ++L   +      +  +  L+L  N  S      +   + L  L L
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 417 GGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFA-NVLSWRVGSDDVLNGSKLN-- 473
             N L   +   L  L  L  +DL+ N     +    +   L            + ++  
Sbjct: 66  SSNVLYETLD--LESLSTLRTLDLNNNYVQ-ELLVGPSIETLH--------AANNNISRV 114

Query: 474 SPELDEEIEFGSLGNNRSSNTMFGMWRWLSALE-------KRAAIDERVEIEFAMKNRYE 526
           S    +  +   L NN+ +          S ++       +   ++              
Sbjct: 115 SCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA--------- 165

Query: 527 IYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIES 586
               ++ + +  L+L  N +  ++   +     +  L+LS+N L+  +   F +   +  
Sbjct: 166 ----ASSDTLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTW 218

Query: 587 LDISYNKLTGQIPPQLTALNFLSIFNVSYNNLS 619
           + +  NKL   I   L     L  F++  N   
Sbjct: 219 ISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 48.3 bits (115), Expect = 7e-06
 Identities = 14/71 (19%), Positives = 27/71 (38%)

Query: 550 IPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLS 609
           I              ++++SL  ++     +   ++ LD+S N L+      L     L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 610 IFNVSYNNLSG 620
           + N+S N L  
Sbjct: 62  LLNLSSNVLYE 72

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  111 bits (280), Expect = 4e-27
 Identities = 64/404 (15%), Positives = 114/404 (28%), Gaps = 96/404 (23%)

Query: 18  NLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLS 77
           N  R KI  ++ + L  +L S+  +  +++ LDLS N                       
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQ------------------- 48

Query: 78  TRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTW 137
                        +  + L                       L+ L+LS N L       
Sbjct: 49  -------------ISAADLAPFT------------------KLELLNLSSNVLYETLD-- 75

Query: 138 LLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYM 197
            L +   L  L L NN    +L  P      +  L  + NN   ++  + G   + +   
Sbjct: 76  -LESLSTLRTLDLNNNYVQELLVGPS-----IETLHAANNNIS-RVSCSRGQGKKNI--- 125

Query: 198 DISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQF 257
            ++ N          G    +  LDL  N         +     +LE L+L  N      
Sbjct: 126 YLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD-- 183

Query: 258 FSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELE 317
               +   +L+ L   +N  +  +     S+  +  + + NN L                
Sbjct: 184 VKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV--------------- 227

Query: 318 ILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLI 377
                       +   L   + L   D+  N             +    ++ K  +  L 
Sbjct: 228 -----------LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKL- 275

Query: 378 PGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHL 421
            G+    C + TL          +P         R + LG +H 
Sbjct: 276 TGQNEEECTVPTLGHYGAYCCEDLP----APFADRLIALGHHHH 315

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  104 bits (261), Expect = 1e-24
 Identities = 56/263 (21%), Positives = 104/263 (39%), Gaps = 18/263 (6%)

Query: 191 LQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSN 250
             +     ++ +  +  +         +  LDLS N  S  +S + +     LELL+LS+
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQ-ISAADLAPFTKLELLNLSS 67

Query: 251 NNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMG 310
           N        +  +L+ LR L   NN         LL   S++ L  +NN +S  +     
Sbjct: 68  NVLYE--TLDLESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNNIS-RVS--CS 117

Query: 311 NFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSG--PIASSLNLSSVEHLSL 368
                 + + ++ N +     +      R++ LD+  N +        + +  ++EHL+L
Sbjct: 118 RGQG-KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176

Query: 369 QKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQ 428
           Q N +   + G++  + KL TL+L  N  +  +  +    + + ++ L  N L   I   
Sbjct: 177 QYNFIYD-VKGQVVFA-KLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVL-IEKA 232

Query: 429 LCQLQKLAMMDLSRNKFSGSIPP 451
           L   Q L   DL  N F      
Sbjct: 233 LRFSQNLEHFDLRGNGFHCGTLR 255

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 90.8 bits (226), Expect = 4e-20
 Identities = 51/364 (14%), Positives = 107/364 (29%), Gaps = 77/364 (21%)

Query: 281 IKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERL 340
           I +   +    ++  ++++ L       +   +  ++ L +S N L       L    +L
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 341 RILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGR 400
            +L++S N L        +LS++  L L  N +  L+ G                     
Sbjct: 61  ELLNLSSNVLYE-TLDLESLSTLRTLDLNNNYVQELLVG--------------------- 98

Query: 401 IPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWR 460
                    ++  L    N++      +    + +    L+ NK +              
Sbjct: 99  --------PSIETLHAANNNISRVSCSRGQGKKNI---YLANNKITMLRDLDEGCR---- 143

Query: 461 VGSDDVLNGSKLNSPELDEEIEFGSLGNNR----SSNTMFGMWRWLSALEKRAAIDERVE 516
                    S++    LD       L  N     +   +      L  L           
Sbjct: 144 ---------SRVQ--YLD-------LKLNEIDTVNFAELAASSDTLEHL----------- 174

Query: 517 IEFAMKNR-YEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIP 575
                 N  Y++       ++  LDLS N+L   +  +      +  ++L NN L   I 
Sbjct: 175 --NLQYNFIYDVKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIE 230

Query: 576 ESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPDKGQFATFDESS 635
           ++    + +E  D+  N        +        +  V+   +   T    +  T     
Sbjct: 231 KALRFSQNLEHFDLRGNGFH-CGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLG 289

Query: 636 YRGN 639
           + G 
Sbjct: 290 HYGA 293

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 88.5 bits (220), Expect = 3e-19
 Identities = 50/272 (18%), Positives = 95/272 (34%), Gaps = 23/272 (8%)

Query: 2   NLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFP 61
           +L  N +       L   T+L++L++SSN L       + +L++L  LDL++N       
Sbjct: 40  DLSGNPLSQISAADLAPFTKLELLNLSSNVLY-ETLD-LESLSTLRTLDLNNNY------ 91

Query: 62  LSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLK 121
           +  L     +E L  +  NN +   + +         + L    +          +  ++
Sbjct: 92  VQELLVGPSIETLHAA--NNNISRVSCSRGQ--GKKNIYLANNKITMLRDLDEGCRSRVQ 147

Query: 122 YLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGI---LQLPKAKHDFLHHLDISCNN 178
           YLDL  N++       L  ++  LE L L+ N    +   +   K     L  LD+S N 
Sbjct: 148 YLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAK-----LKTLDLSSNK 202

Query: 179 FRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVT 238
               +          + ++ +  N     I  +    + L   DL  N F  G  +   +
Sbjct: 203 LA-FMGPEFQ-SAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFS 259

Query: 239 GCFSLELLDLSNNNFEGQFFSEYMNLTRLRHL 270
               ++ +             E   +  L H 
Sbjct: 260 KNQRVQTVAKQTVKKLTGQNEEECTVPTLGHY 291

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  114 bits (287), Expect = 9e-27
 Identities = 85/402 (21%), Positives = 153/402 (38%), Gaps = 33/402 (8%)

Query: 18  NLTRLKILDISSNQLNGSLP--SVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLL 75
            +  L+ LD+S N  +  LP      NLT L +L LS   F     L  +A+   L  +L
Sbjct: 119 PMASLRHLDLSFNDFD-VLPVCKEFGNLTKLTFLGLSAAKFR-QLDLLPVAHL-HLSCIL 175

Query: 76  LSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNF- 134
           L   +  +       L      VL L     +       +    L +L LS+ KL     
Sbjct: 176 LDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENC 235

Query: 135 -----PTWLLRNNPKLEVLLLKNNSFS--GILQLPK-AKHDFLHHLDISCNNFRGKLPHN 186
                    L   P L  + L++   +    ++L +      + +L+I       ++   
Sbjct: 236 QRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDRE 295

Query: 187 MGVI----LQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCF- 241
                   L+ LM   +    F  +         E+++  LS +      +  +   C  
Sbjct: 296 EFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISD-----TPFIHMVCPP 350

Query: 242 ---SLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFS--GKIKDGLLSSTSLQVLDI 296
              S   L+ + N F    F     L RL+ L  + N      K+     + +SL+ LD+
Sbjct: 351 SPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDV 410

Query: 297 SNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIAS 356
           S N L+ H       ++  + +L++S N L G+V   L    ++++LD+  NR+      
Sbjct: 411 SLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKD 468

Query: 357 SLNLSSVEHLSLQKNALNGLIPGELFRSCK-LVTLNLRDNTF 397
             +L +++ L++  N L   +P  +F     L  + L DN +
Sbjct: 469 VTHLQALQELNVASNQLKS-VPDGVFDRLTSLQYIWLHDNPW 509

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 96.5 bits (240), Expect = 5e-21
 Identities = 77/453 (16%), Positives = 139/453 (30%), Gaps = 60/453 (13%)

Query: 20  TRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTR 79
            R K L +S N ++      IS L+ L  L LSHN             +  LE L +S  
Sbjct: 52  PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVS-- 108

Query: 80  NNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLL 139
           +N L       +    +                       L++LDLS N           
Sbjct: 109 HNRLQN-----ISCCPM---------------------ASLRHLDLSFNDFDVLPVCKEF 142

Query: 140 RNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHN-----MGVILQKL 194
            N  KL  L L         QL       LH   I  +     +               L
Sbjct: 143 GNLTKLTFLGLSAAK---FRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVL 199

Query: 195 MYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCF------SLELLDL 248
             +    + F   +  S   +  L L ++  N  +     + ++         ++ L  +
Sbjct: 200 HLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHI 259

Query: 249 SNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSST-----SLQVLDISNNMLSG 303
                      ++     + +L   N   + +I     + +     SL +  + N +   
Sbjct: 260 ETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFL- 318

Query: 304 HIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSG-PIASSLNLSS 362
                + +  +E+ I  +S +       V   +      L+ ++N  +         L  
Sbjct: 319 FSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKR 378

Query: 363 VEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTF----SGRIPHQINEHSNLRFLLLGG 418
           ++ L LQ+N L          +  + +L   D +     S           ++  L L  
Sbjct: 379 LQTLILQRNGLKNF-FKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSS 437

Query: 419 NHLQGPIPDQL-CQLQKLAMMDLSRNKFSGSIP 450
           N L G +   L  +++ L   DL  N+   SIP
Sbjct: 438 NMLTGSVFRCLPPKVKVL---DLHNNRIM-SIP 466

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 74.5 bits (183), Expect = 4e-14
 Identities = 96/500 (19%), Positives = 182/500 (36%), Gaps = 71/500 (14%)

Query: 119 HLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDF---LHHLDIS 175
             K L LS N +        +    +L VL L +N       L      F   L +LD+S
Sbjct: 53  RTKALSLSQNSIS-ELRMPDISFLSELRVLRLSHNRIR---SLDFHVFLFNQDLEYLDVS 108

Query: 176 CNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSA--GEMKELSLLDLSRNYFSGGLS 233
            N  +  +       +  L ++D+S N F+  +P     G + +L+ L LS   F     
Sbjct: 109 HNRLQ-NISCCP---MASLRHLDLSFNDFD-VLPVCKEFGNLTKLTFLGLSAAKFRQLDL 163

Query: 234 QSVVTGCFSLELLDLSNNNFEGQFFSEYMNL-TRLRHLYFENNN-FSGKIKDGLLSSTSL 291
             V     S  LLDL + + +G          T + HL F  N+ FS ++   + +   L
Sbjct: 164 LPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHL 223

Query: 292 QVLDISNNMLS-GHIPHWMGNFSSELEILSMSKNHLEGNVP--------VQLNNLERLRI 342
           Q+ +I  N  +   +  ++   +    +L+++  H+E                 +E L I
Sbjct: 224 QLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNI 283

Query: 343 LDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTF--SGR 400
            +++          + + ++++ L ++       +  +         +N++  +   +  
Sbjct: 284 YNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPF 343

Query: 401 IP-HQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSW 459
           I        S+  FL    N     +      L++L  + L RN    +         + 
Sbjct: 344 IHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK-NFFKVALMTKNM 402

Query: 460 RVGSDDVLNGSKLNSPELD------EEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDE 513
                  ++ + LNS   D      E I   +L +N  + ++F   R L           
Sbjct: 403 SSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVF---RCL----------- 448

Query: 514 RVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGS 573
                                +V  LDL  N++   IP D+  LQA+  LN+++N L  S
Sbjct: 449 -------------------PPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-S 487

Query: 574 IPE-SFSNLKMIESLDISYN 592
           +P+  F  L  ++ + +  N
Sbjct: 488 VPDGVFDRLTSLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 69.9 bits (171), Expect = 1e-12
 Identities = 56/359 (15%), Positives = 111/359 (30%), Gaps = 24/359 (6%)

Query: 265 TRLRHLYFENNNFSGKIKDGLLSS-TSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSK 323
            R + L    N+ S +++   +S  + L+VL +S+N +   +   +  F+ +LE L +S 
Sbjct: 52  PRTKALSLSQNSIS-ELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSH 109

Query: 324 NHLEGNVPVQLNNLERLRILDISENRL-SGPIASSL-NLSSVEHLSLQKNALNGLIPGEL 381
           N L+ N+      +  LR LD+S N     P+     NL+ +  L L       L    +
Sbjct: 110 NRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPV 166

Query: 382 FR-SCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDL 440
                  + L+L           +  +  N   L L  +            +  L  + L
Sbjct: 167 AHLHLSCILLDLVSYHIK-GGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQL 225

Query: 441 SRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWR 500
           S  K +          LS       +LN +  +     +                   + 
Sbjct: 226 SNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCS------------VKLFQFF 273

Query: 501 WLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAI 560
           W   +E     +  + I   +      Y+ + +  +    +          +       +
Sbjct: 274 WPRPVEYLNIYN--LTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEM 331

Query: 561 LALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLS 619
               LS +           +      L+ + N  T  +    + L  L    +  N L 
Sbjct: 332 NIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK 390

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 69.1 bits (169), Expect = 2e-12
 Identities = 77/453 (16%), Positives = 156/453 (34%), Gaps = 52/453 (11%)

Query: 172 LDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSA-GEMKELSLLDLSRNYFSG 230
           L +S N+   +L       L +L  + +S N    ++ +      ++L  LD+S N    
Sbjct: 57  LSLSQNSIS-ELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNRLQN 114

Query: 231 GLSQSVVTGCFSLELLDLSNNNF----EGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLL 286
            +S   +    SL  LDLS N+F      + F    NLT+L  L      F  ++    +
Sbjct: 115 -ISCCPMA---SLRHLDLSFNDFDVLPVCKEFG---NLTKLTFLGLSAAKFR-QLDLLPV 166

Query: 287 SSTSLQVLDISNNMLS---GHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRIL 343
           +   L  + +         G         ++ L ++    +     V + +N L  L++ 
Sbjct: 167 AHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLS 226

Query: 344 DISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPG--------ELFRSCKLVTLNLRDN 395
           +I  N  +     +         +L    L  +           + F    +  LN+ + 
Sbjct: 227 NIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNL 286

Query: 396 TFSGRIPHQINEHSN-----LRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIP 450
           T + RI  +   +S      L    +                 ++ +  LS +       
Sbjct: 287 TITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHM 346

Query: 451 PCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAA 510
            C  +  S+   +      +         +  F      +   T+      L    K A 
Sbjct: 347 VCPPSPSSFTFLN---FTQNVF------TDSVFQGCSTLKRLQTLILQRNGLKNFFKVAL 397

Query: 511 IDERVEIEFAMKNRYEIYNGSNVNRVTG-------LDLSCNQLTGEIPSDI-GQLQAILA 562
           + + +     +       N    +R          L+LS N LTG +   +  +++    
Sbjct: 398 MTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKV--- 454

Query: 563 LNLSNNSLSGSIPESFSNLKMIESLDISYNKLT 595
           L+L NN +  SIP+  ++L+ ++ L+++ N+L 
Sbjct: 455 LDLHNNRIM-SIPKDVTHLQALQELNVASNQLK 486

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 59.1 bits (143), Expect = 3e-09
 Identities = 38/208 (18%), Positives = 69/208 (33%), Gaps = 36/208 (17%)

Query: 1   MNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMF 60
             L  +      + C  + +    L+ + N    S+    S L  L+ L L  N      
Sbjct: 334 KMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNG----- 388

Query: 61  PLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHL 120
            L +    +    +  +  +      + N L               + +Y         +
Sbjct: 389 -LKNFFKVA---LMTKNMSSLETLDVSLNSLN--------------SHAYDRTCAWAESI 430

Query: 121 KYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFS----GILQLPKAKHDFLHHLDISC 176
             L+LS N L G+    L    PK++VL L NN        +  L       L  L+++ 
Sbjct: 431 LVLNLSSNMLTGSVFRCL---PPKVKVLDLHNNRIMSIPKDVTHLQA-----LQELNVAS 482

Query: 177 NNFRGKLPHNMGVILQKLMYMDISKNCF 204
           N  +  +P  +   L  L Y+ +  N +
Sbjct: 483 NQLK-SVPDGVFDRLTSLQYIWLHDNPW 509

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 53.0 bits (127), Expect = 2e-07
 Identities = 41/305 (13%), Positives = 85/305 (27%), Gaps = 89/305 (29%)

Query: 1   MNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMF 60
           + +               L  L I  + +     S  ++ S    +    LS ++     
Sbjct: 286 LTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISD----- 340

Query: 61  PLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHL 120
                                 +H+       +                           
Sbjct: 341 -------------------TPFIHMVCPPSPSS--------------------------F 355

Query: 121 KYLDLSHNKLV----GNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISC 176
            +L+ + N           T       +L+ L+L+ N         K      +      
Sbjct: 356 TFLNFTQNVFTDSVFQGCSTL-----KRLQTLILQRNGLK---NFFKVALMTKN------ 401

Query: 177 NNFRGKLPHNMGVILQKLMYMDISKNCFE-GNIPYSAGEMKELSLLDLSRNYFSGGLSQS 235
                         +  L  +D+S N         +    + + +L+LS N  +G + + 
Sbjct: 402 --------------MSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRC 447

Query: 236 VVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSS-TSLQVL 294
           +      +++LDL NN        +  +L  L+ L   +N     + DG+    TSLQ +
Sbjct: 448 LPP---KVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYI 502

Query: 295 DISNN 299
            + +N
Sbjct: 503 WLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 45.2 bits (107), Expect = 6e-05
 Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 8/95 (8%)

Query: 536 VTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPES-FSNLKMIESLDISYNKL 594
              L LS N ++     DI  L  +  L LS+N +  S+    F   + +E LD+S+N+L
Sbjct: 54  TKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNRL 112

Query: 595 TGQIPPQ-LTALNFLSIFNVSYNNLSGRTPDKGQF 628
              I    + +L  L   ++S+N+     P   +F
Sbjct: 113 QN-ISCCPMASLRHL---DLSFNDFD-VLPVCKEF 142

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  114 bits (287), Expect = 9e-27
 Identities = 68/350 (19%), Positives = 129/350 (36%), Gaps = 24/350 (6%)

Query: 2   NLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFP 61
           +++              L   KI+   ++ +     +++ +   +E L+L+    E    
Sbjct: 33  HIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EID 91

Query: 62  LSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLK 121
             + A    ++ L +   N   ++    +     L VL L + +L+        +   L 
Sbjct: 92  TYAFAYAHTIQKLYMG-FNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLT 150

Query: 122 YLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRG 181
            L +S+N L         +    L+ L L +N    +  +  +    L H ++S N    
Sbjct: 151 TLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNR---LTHVDLSLIPSLFHANVSYNLLS- 205

Query: 182 KLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCF 241
            L      I   +  +D S N     +        EL++L L  N  +     + +    
Sbjct: 206 TLA-----IPIAVEELDASHNSIN-VVR--GPVNVELTILKLQHNNLT---DTAWLLNYP 254

Query: 242 SLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNML 301
            L  +DLS N  E   +  ++ + RL  LY  NN     +        +L+VLD+S+N L
Sbjct: 255 GLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHL 313

Query: 302 SGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLS 351
             H+      F   LE L +  N +     ++L+    L+ L +S N   
Sbjct: 314 L-HVERNQPQFDR-LENLYLDHNSIV---TLKLSTHHTLKNLTLSHNDWD 358

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  110 bits (275), Expect = 3e-25
 Identities = 79/457 (17%), Positives = 154/457 (33%), Gaps = 39/457 (8%)

Query: 2   NLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFP 61
             + + +       L +  ++++L+++  Q+        +   +++ L +  N      P
Sbjct: 57  TFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLP 115

Query: 62  LSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLK 121
                N   L  L+L  RN+   +    +  T +L  L ++  NL     D       L+
Sbjct: 116 PHVFQNVPLLTVLVLE-RNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQ 174

Query: 122 YLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRG 181
            L LS N+L  +    L+ +   L    +  N  S +          +  LD S N+   
Sbjct: 175 NLQLSSNRLT-HVDLSLIPS---LFHANVSYNLLSTLAIPI-----AVEELDASHNSIN- 224

Query: 182 KLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCF 241
            +      +  +L  + +  N    +  +       L  +DLS N     +         
Sbjct: 225 VVRGP---VNVELTILKLQHNNLT-DTAWLLN-YPGLVEVDLSYNELE-KIMYHPFVKMQ 278

Query: 242 SLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNML 301
            LE L +SNN            +  L+ L   +N+    ++        L+ L + +N +
Sbjct: 279 RLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSI 336

Query: 302 SGHIPHWMGNFSSELEILSMSKNHLEGNVPVQL-NNLERLRILDISEN-----RLSGPIA 355
              +   +    + L+ L++S N  + N    L  N+ R  + D  ++     +L   + 
Sbjct: 337 V-TLK--LSTHHT-LKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKIDYQLEHGLC 392

Query: 356 SSLNLSSVEHLSLQKNALNGLI--PGELFRSC------KLVTLNLRDNTFSGRIPHQINE 407
              +        LQ  AL  ++         C        V       T  G +P Q NE
Sbjct: 393 CKESDKPYLDRLLQYIALTSVVEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNE 452

Query: 408 HSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNK 444
                   L    +Q    +Q+ Q Q L  +    + 
Sbjct: 453 QLEAEVNEL-RAEVQQLTNEQIQQEQLLQGLHAEIDT 488

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 95.0 bits (236), Expect = 2e-20
 Identities = 65/409 (15%), Positives = 134/409 (32%), Gaps = 60/409 (14%)

Query: 242 SLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSS-TSLQVLDISNNM 300
               + +     +  F  E + L   + + F+N+    K+   LL S   +++L++++  
Sbjct: 28  VFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQ 86

Query: 301 LSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSG-PIASSLN 359
           +   I  +   ++  ++ L M  N +    P    N+  L +L +  N LS  P     N
Sbjct: 87  IE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHN 145

Query: 360 LSSVEHLSLQKNALNGLIPGELFRSCK-LVTLNLRDNTFSGRIPHQINEHSNLRFLLLGG 418
              +  LS+  N L   I  + F++   L  L L  N  +  +   ++   +L    +  
Sbjct: 146 TPKLTTLSMSNNNLER-IEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSY 201

Query: 419 NHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELD 478
           N L       L     +  +D S N  +    P    +   +      L  + L      
Sbjct: 202 NLLS-----TLAIPIAVEELDASHNSINVVRGPVNVELTILK------LQHNNLTDTAWL 250

Query: 479 E---EIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNR 535
                +    L  N     M+  +  +  LE+                            
Sbjct: 251 LNYPGLVEVDLSYNELEKIMYHPFVKMQRLER---------------------------- 282

Query: 536 VTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLT 595
              L +S N+L   +      +  +  L+LS+N L   +  +      +E+L + +N + 
Sbjct: 283 ---LYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV 337

Query: 596 GQIPPQLTALNFLSIFNVSYNNLSGRTPDKGQFATFDESSYRGNPSLCA 644
             +       + L    +S+N+       +  F      +       C 
Sbjct: 338 -TLKLS--THHTLKNLTLSHNDWDC-NSLRALFRNVARPAVDDADQHCK 382

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 78.8 bits (194), Expect = 2e-15
 Identities = 51/337 (15%), Positives = 130/337 (38%), Gaps = 28/337 (8%)

Query: 288 STSLQVLDISNNMLSGHIPHWMGNFS-SELEILSMSKNHLEGNVPVQLNNLERLRILDIS 346
                  D+  +M +  +     + + +  +I++   + +       L++  ++ +L+++
Sbjct: 24  QYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLN 83

Query: 347 ENRLSG-PIASSLNLSSVEHLSLQKNALNGLIPGELFRSC-KLVTLNLRDNTFSGRIPHQ 404
           + ++      +     +++ L +  NA+  L P  +F++   L  L L  N  S  +P  
Sbjct: 84  DLQIEEIDTYAFAYAHTIQKLYMGFNAIRYL-PPHVFQNVPLLTVLVLERNDLS-SLPRG 141

Query: 405 INEH-SNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGS 463
           I  +   L  L +  N+L+    D       L  + LS N+ +        ++       
Sbjct: 142 IFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHAN--- 198

Query: 464 DDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKN 523
              ++ + L++  +   +E     +N            ++ +     ++    ++    N
Sbjct: 199 ---VSYNLLSTLAIPIAVEELDASHNS-----------INVVRGPVNVELT-ILKLQHNN 243

Query: 524 RYEIYNGSNVNRVTGLDLSCNQLTGEIPSDI-GQLQAILALNLSNNSLSGSIPESFSNLK 582
             +     N   +  +DLS N+L  +I      ++Q +  L +SNN L  ++      + 
Sbjct: 244 LTDTAWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIP 301

Query: 583 MIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLS 619
            ++ LD+S+N L   +       + L    + +N++ 
Sbjct: 302 TLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV 337

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 77.7 bits (191), Expect = 6e-15
 Identities = 82/454 (18%), Positives = 143/454 (31%), Gaps = 40/454 (8%)

Query: 2   NLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFP 61
            LERN + S       N  +L  L +S+N L           TSL+ L LS N       
Sbjct: 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD 187

Query: 62  LSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLK 121
           LS + +   L    +S   N L            +  L  +  ++N       +    L 
Sbjct: 188 LSLIPS---LFHANVS--YNLLSTLAIP----IAVEELDASHNSINVVRGPVNV---ELT 235

Query: 122 YLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRG 181
            L L HN L  +     L N P L  + L  N    I+  P  K   L  L IS N    
Sbjct: 236 ILKLQHNNLT-DTAW--LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV- 291

Query: 182 KLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCF 241
            L    G  +  L  +D+S N    ++  +  +   L  L L  N        ++     
Sbjct: 292 ALN-LYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-----TLKLSTH 344

Query: 242 -SLELLDLSNNNFEGQFFSEYM-NLTRLR------HLYFENNNFSGKIKDGLLSSTSLQV 293
            +L+ L LS+N+++         N+ R        H   +     G            ++
Sbjct: 345 HTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRL 404

Query: 294 LDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGP 353
           L                   S  + ++  ++            L+    L+   N L   
Sbjct: 405 LQYIALTSVVEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNEL--- 461

Query: 354 IASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLR- 412
                 +  + +  +Q+  L   +  E+  + +   L       S    +++  H   R 
Sbjct: 462 ---RAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKERQ 518

Query: 413 -FLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKF 445
            F L      +     +  + + L   +++  K 
Sbjct: 519 AFKLRETQARRTEADAKQKETEDLEQENIALEKQ 552

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 65.3 bits (159), Expect = 4e-11
 Identities = 32/190 (16%), Positives = 73/190 (38%), Gaps = 7/190 (3%)

Query: 259 SEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEI 318
           S          ++ +            ++  + +++   N+ +   +P  + +   ++E+
Sbjct: 21  SNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVEL 79

Query: 319 LSMSKNHLEGNVPVQLNNLERLRILDISENRLSG-PIASSLNLSSVEHLSLQKNALNGLI 377
           L+++   +E            ++ L +  N +   P     N+  +  L L++N L+ L 
Sbjct: 80  LNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLP 139

Query: 378 PGELFRSCKLVTLNLRDNTFSGRIPHQINEH-SNLRFLLLGGNHLQGPIPDQLCQLQKLA 436
            G    + KL TL++ +N    RI     +  ++L+ L L  N L       +  L    
Sbjct: 140 RGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHA- 197

Query: 437 MMDLSRNKFS 446
             ++S N  S
Sbjct: 198 --NVSYNLLS 205

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  112 bits (282), Expect = 2e-26
 Identities = 68/372 (18%), Positives = 121/372 (32%), Gaps = 64/372 (17%)

Query: 33  NGSLPSVISNL-TSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWL 91
                +V   + T    LDL  N  +        A+   LE L L+   N +       +
Sbjct: 20  RKRFVAVPEGIPTETRLLDLGKNRIK-TLNQDEFASFPHLEELELN--ENIVSA-----V 71

Query: 92  PTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLK 151
                              P    + ++L+ L L  N+L    P  +      L  L + 
Sbjct: 72  E------------------PGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDIS 112

Query: 152 NNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYS 211
            N    +L         L  L++  N+                    IS   F G     
Sbjct: 113 ENKIVILLDYMFQDLYNLKSLEVGDNDLV-----------------YISHRAFSG----- 150

Query: 212 AGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNF---EGQFFSEYMNLTRLR 268
              +  L  L L +   +  +    ++    L +L L + N        F     L RL+
Sbjct: 151 ---LNSLEQLTLEKCNLTS-IPTEALSHLHGLIVLRLRHLNINAIRDYSFK---RLYRLK 203

Query: 269 HLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEG 328
            L   +  +   +    L   +L  L I++  L+  +P+        L  L++S N +  
Sbjct: 204 VLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPIST 262

Query: 329 NVPVQLNNLERLRILDISENRLSG-PIASSLNLSSVEHLSLQKNALNGLIPGELFRSCK- 386
                L+ L RL+ + +   +L+     +   L+ +  L++  N L   +   +F S   
Sbjct: 263 IEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT-TLEESVFHSVGN 321

Query: 387 LVTLNLRDNTFS 398
           L TL L  N  +
Sbjct: 322 LETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  106 bits (267), Expect = 1e-24
 Identities = 64/378 (16%), Positives = 121/378 (32%), Gaps = 87/378 (23%)

Query: 2   NLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFP 61
           +L +N I +       +   L+ L+++ N ++   P   +NL +L  L L  N  + + P
Sbjct: 38  DLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIP 96

Query: 62  LSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLK 121
           L      S L  L +S   N + +     L                          Y+LK
Sbjct: 97  LGVFTGLSNLTKLDIS--ENKIVI-----LL------------------DYMFQDLYNLK 131

Query: 122 YLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRG 181
            L++  N LV             LE L L+  + +                         
Sbjct: 132 SLEVGDNDLV-YISHRAFSGLNSLEQLTLEKCNLT------------------------- 165

Query: 182 KLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCF 241
                            I               +  L +L L     +  +        +
Sbjct: 166 ----------------SIPTEALSH--------LHGLIVLRLRHLNIN-AIRDYSFKRLY 200

Query: 242 SLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSS-TSLQVLDISNNM 300
            L++L++S+  +        +    L  L   + N +  +    +     L+ L++S N 
Sbjct: 201 RLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNP 259

Query: 301 LSGHIPHWMGNFS--SELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSL 358
           +S  I            L+ + +    L    P     L  LR+L++S N+L+  +  S+
Sbjct: 260 IS-TIEG--SMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTT-LEESV 315

Query: 359 --NLSSVEHLSLQKNALN 374
             ++ ++E L L  N L 
Sbjct: 316 FHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  101 bits (254), Expect = 6e-23
 Identities = 57/242 (23%), Positives = 91/242 (37%), Gaps = 16/242 (6%)

Query: 217 ELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNF---EGQFFSEYMNLTRLRHLYFE 273
           E  LLDL +N     L+Q        LE L+L+ N     E   F+   NL  LR L   
Sbjct: 33  ETRLLDLGKNRIKT-LNQDEFASFPHLEELELNENIVSAVEPGAFN---NLFNLRTLGLR 88

Query: 274 NNNFSGKIKDGLLSS-TSLQVLDISNNMLSGHIPHWMGNFS--SELEILSMSKNHLEGNV 330
           +N     I  G+ +  ++L  LDIS N +   +      F     L+ L +  N L    
Sbjct: 89  SNRLK-LIPLGVFTGLSNLTKLDISENKIV-ILLD--YMFQDLYNLKSLEVGDNDLVYIS 144

Query: 331 PVQLNNLERLRILDISENRLSG-PIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVT 389
               + L  L  L + +  L+  P  +  +L  +  L L+   +N +      R  +L  
Sbjct: 145 HRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKV 204

Query: 390 LNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSI 449
           L +    +   +        NL  L +   +L       +  L  L  ++LS N  S +I
Sbjct: 205 LEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS-TI 263

Query: 450 PP 451
             
Sbjct: 264 EG 265

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  101 bits (254), Expect = 7e-23
 Identities = 66/358 (18%), Positives = 124/358 (34%), Gaps = 63/358 (17%)

Query: 242 SLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSS-TSLQVLDISNNM 300
              LLDL  N  +     E+ +   L  L    N  S  ++ G  ++  +L+ L + +N 
Sbjct: 33  ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-AVEPGAFNNLFNLRTLGLRSNR 91

Query: 301 LSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSG-PIASSLN 359
           L   IP  +    S L  L +S+N +   +     +L  L+ L++ +N L      +   
Sbjct: 92  LK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSG 150

Query: 360 LSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGN 419
           L+S+E L+L+K  L  +    L     L+ L LR    +    +       L+ L +   
Sbjct: 151 LNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHW 210

Query: 420 HLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPC-FANVLSWRVGSDDVLNGSKLNSPELD 478
                +         L  + ++    + ++P     ++               L    L+
Sbjct: 211 PYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHL-------------VYLR--FLN 254

Query: 479 EEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTG 538
                  L  N            +S +E                          + R+  
Sbjct: 255 -------LSYNP-----------ISTIEGSM---------L-----------HELLRLQE 276

Query: 539 LDLSCNQLTGEIPSDI-GQLQAILALNLSNNSLSGSIPES-FSNLKMIESLDISYNKL 594
           + L   QL   +       L  +  LN+S N L+ ++ ES F ++  +E+L +  N L
Sbjct: 277 IQLVGGQLA-VVEPYAFRGLNYLRVLNVSGNQLT-TLEESVFHSVGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 91.3 bits (227), Expect = 2e-19
 Identities = 70/362 (19%), Positives = 128/362 (35%), Gaps = 56/362 (15%)

Query: 288 STSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISE 347
           S   + +          +P       +E  +L + KN ++     +  +   L  L+++E
Sbjct: 10  SAQDRAVLCHRKRFV-AVP---EGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNE 65

Query: 348 NRLSGPIASSL--NLSSVEHLSLQKNALNGLIPGELFRSC-KLVTLNLRDNTFSGRIPHQ 404
           N +S  +      NL ++  L L+ N L  LIP  +F     L  L++ +N     +   
Sbjct: 66  NIVSA-VEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIV-ILLDY 122

Query: 405 INEH-SNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPP-CFANVLSWRVG 462
           + +   NL+ L +G N L          L  L  + L +   + SIP    +++      
Sbjct: 123 MFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLI-- 179

Query: 463 SDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMK 522
                         L        L +   +      ++ L  L+        +EI     
Sbjct: 180 -------------VLR-------LRHLNINAIRDYSFKRLYRLK-------VLEISHWPY 212

Query: 523 NRYEIYNGSNVNRVTGLDLSCNQLTGEIPSD-IGQLQAILALNLSNNSLSGSIPESFSNL 581
                 N      +T L ++   LT  +P   +  L  +  LNLS N +S         L
Sbjct: 213 LDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHEL 271

Query: 582 KMIESLDISYNKLTGQIPPQ-LTALNFLSIFNVSYNNLSGRTPDKGQFATFDESSYRGNP 640
             ++ + +   +L   + P     LN+L + NVS N L+          T +ES +    
Sbjct: 272 LRLQEIQLVGGQLA-VVEPYAFRGLNYLRVLNVSGNQLT----------TLEESVFHSVG 320

Query: 641 SL 642
           +L
Sbjct: 321 NL 322

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 71.3 bits (175), Expect = 4e-13
 Identities = 33/180 (18%), Positives = 60/180 (33%), Gaps = 3/180 (1%)

Query: 1   MNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMF 60
           + LE+  + S     L +L  L +L +    +N         L  L+ L++SH  +    
Sbjct: 157 LTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTM 216

Query: 61  PLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHL 120
             + L   + L  L ++   N   V          L  L L+   ++      L     L
Sbjct: 217 TPNCLYGLN-LTSLSIT-HCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRL 274

Query: 121 KYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFR 180
           + + L   +L      +  R    L VL +  N  + + +        L  L +  N   
Sbjct: 275 QEIQLVGGQL-AVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  100 bits (252), Expect = 1e-22
 Identities = 77/431 (17%), Positives = 143/431 (33%), Gaps = 68/431 (15%)

Query: 2   NLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPS-VISNLTSLEYLDLSHNNFEGMF 60
           +L  N I     T    L  L+ L +        + +     L+SL  L L +N F  + 
Sbjct: 36  DLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQL- 94

Query: 61  PLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHL 120
              +    + LE L L+     L       L                    +F      L
Sbjct: 95  ETGAFNGLANLEVLTLT--QCNL---DGAVLS------------------GNFFKPLTSL 131

Query: 121 KYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGI--LQLPKAKHDFLHHLDISCNN 178
           + L L  N +    P     N  +  VL L  N    I    L   +      L +S   
Sbjct: 132 EMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSIT 191

Query: 179 FRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVT 238
            +                 D+++         +  +   ++ LDLS N F   +++    
Sbjct: 192 LQ-----------------DMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFD 234

Query: 239 GCFSLELLDLSNNNFEGQFFS-EYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDIS 297
                ++  L  +N      S  + N     +  F+            L ++ ++  D+S
Sbjct: 235 AIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKG-----------LEASGVKTCDLS 283

Query: 298 NNMLSGHIPHWMGNFSSELEILSMSKN---HLEGNVPVQLNNLERLRILDISENRLSGPI 354
            + +   +   + +  ++LE L++++N    ++ N       L  L  L++S+N L    
Sbjct: 284 KSKIF-ALLKSVFSHFTDLEQLTLAQNEINKIDDNA---FWGLTHLLKLNLSQNFLGSID 339

Query: 355 ASSL-NLSSVEHLSLQKNALNGLIPGELFRSC-KLVTLNLRDNTFSGRIPHQINEH-SNL 411
           +    NL  +E L L  N +   +  + F     L  L L  N     +P  I +  ++L
Sbjct: 340 SRMFENLDKLEVLDLSYNHIRA-LGDQSFLGLPNLKELALDTNQLK-SVPDGIFDRLTSL 397

Query: 412 RFLLLGGNHLQ 422
           + + L  N   
Sbjct: 398 QKIWLHTNPWD 408

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 89.4 bits (222), Expect = 6e-19
 Identities = 77/374 (20%), Positives = 137/374 (36%), Gaps = 49/374 (13%)

Query: 265 TRLRHLYFENNNFSGKIKDGLLSS-TSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSK 323
             + ++    N+ + ++ +   S    LQ L +        I +      S L IL +  
Sbjct: 30  AHVNYVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88

Query: 324 NHLEGNVPVQ-LNNLERLRILDISENRL-SGPIASSL--NLSSVEHLSLQKNALNGLIPG 379
           N     +     N L  L +L +++  L    ++ +    L+S+E L L+ N +  + P 
Sbjct: 89  NQFL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPA 147

Query: 380 ELFRS-CKLVTLNLRDNTFSGRIPHQI---NEHSNLRFLLLGGNHLQGPIPDQLCQ---- 431
             F +  +   L+L  N     I  +     +  +   L L    LQ      L      
Sbjct: 148 SFFLNMRRFHVLDLTFNKVK-SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCG 206

Query: 432 ----LQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPEL-DEEIEFGSL 486
                  +  +DLS N F  S+   F           D + G+K+ S  L +      S 
Sbjct: 207 NPFKNTSITTLDLSGNGFKESMAKRF----------FDAIAGTKIQSLILSNSYNMGSSF 256

Query: 487 GNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNG--SNVNRVTGLDLSCN 544
           G+    +     ++ L A   +         + +    + +     S+   +  L L+ N
Sbjct: 257 GHTNFKDPDNFTFKGLEASGVK-------TCDLSKSKIFALLKSVFSHFTDLEQLTLAQN 309

Query: 545 QLTGEIPSDI-GQLQAILALNLSNNSLSGSIPE-SFSNLKMIESLDISYNKLTGQIPPQ- 601
           ++  +I  +    L  +L LNLS N L  SI    F NL  +E LD+SYN +   +  Q 
Sbjct: 310 EIN-KIDDNAFWGLTHLLKLNLSQNFLG-SIDSRMFENLDKLEVLDLSYNHIR-ALGDQS 366

Query: 602 ---LTALNFLSIFN 612
              L  L  L++  
Sbjct: 367 FLGLPNLKELALDT 380

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 82.9 bits (205), Expect = 7e-17
 Identities = 79/448 (17%), Positives = 143/448 (31%), Gaps = 98/448 (21%)

Query: 169 LHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSA-GEMKELSLLDLSRNY 227
           ++++D+S N+   +L       LQ L ++ + +      I  +    +  L +L L  N 
Sbjct: 32  VNYVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90

Query: 228 FSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYM--NLTRLRHLYFENNNFSGKIKDGL 285
           F   L      G  +LE+L L+  N +G   S      LT L  L   +NN         
Sbjct: 91  FLQ-LETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASF 149

Query: 286 LSS-TSLQVLDISNNMLSGHIPH--WMGNFSSELEILSMSKNHLEGNVPVQL-------- 334
             +     VLD++ N +   I     +        +L +S   L+      L        
Sbjct: 150 FLNMRRFHVLDLTFNKVK-SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNP 208

Query: 335 NNLERLRILDISENRL----SGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTL 390
                +  LD+S N      +     ++  + ++ L L  +   G               
Sbjct: 209 FKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGS------SFGHTNFK 262

Query: 391 NLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQ---GPIPDQLCQLQKLAMMDLSRNKFSG 447
           +  + TF G       E S ++   L  + +      +      L++L    L++N+ + 
Sbjct: 263 DPDNFTFKG------LEASGVKTCDLSKSKIFALLKSVFSHFTDLEQL---TLAQNEIN- 312

Query: 448 SIPP-CFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALE 506
            I    F  +             + L   +L+       L  N   +    M+  L  LE
Sbjct: 313 KIDDNAFWGL-------------THLL--KLN-------LSQNFLGSIDSRMFENLDKLE 350

Query: 507 KRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDI-GQLQAILALNL 565
                                           LDLS N +   +       L  +  L L
Sbjct: 351 V-------------------------------LDLSYNHIR-ALGDQSFLGLPNLKELAL 378

Query: 566 SNNSLSGSIPES-FSNLKMIESLDISYN 592
             N L  S+P+  F  L  ++ + +  N
Sbjct: 379 DTNQLK-SVPDGIFDRLTSLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 78.2 bits (193), Expect = 2e-15
 Identities = 69/439 (15%), Positives = 131/439 (29%), Gaps = 111/439 (25%)

Query: 20  TRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTR 79
             +  +D+S N +     +  S L  L++L +       +   ++    S L  L L   
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD-- 87

Query: 80  NNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLL 139
            N         L T      GL                  L+ L L+   L         
Sbjct: 88  YNQFLQ-----LETGAFN--GLAN----------------LEVLTLTQCNL--------- 115

Query: 140 RNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDI 199
                 +  +L  N F  +  L          L +  NN +   P +  + +++   +D+
Sbjct: 116 ------DGAVLSGNFFKPLTSL--------EMLVLRDNNIKKIQPASFFLNMRRFHVLDL 161

Query: 200 SKN---CFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQ 256
           + N           +    K  +LL LS                    L D++      +
Sbjct: 162 TFNKVKSICEEDLLNFQG-KHFTLLRLSSIT-----------------LQDMNEYWLGWE 203

Query: 257 FFSEYMNLTRLRHLYFENNNFSGKIK---DGLLSSTSLQVLDISNNMLSGHIPHWMGNFS 313
                   T +  L    N F   +       ++ T +Q L +SN+       + MG+  
Sbjct: 204 KCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNS-------YNMGSSF 256

Query: 314 SELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSG-PIASSLNLSSVEHLSLQKNA 372
                        +G     +      +  D+S++++     +   + + +E L+L +N 
Sbjct: 257 GHTNFKDPDNFTFKGLEASGV------KTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNE 310

Query: 373 LNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQL 432
           +N +     F                          ++L  L L  N L          L
Sbjct: 311 INKIDDN-AFWGL-----------------------THLLKLNLSQNFLGSIDSRMFENL 346

Query: 433 QKLAMMDLSRNKFSGSIPP 451
            KL ++DLS N    ++  
Sbjct: 347 DKLEVLDLSYNHIR-ALGD 364

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 76.7 bits (189), Expect = 7e-15
 Identities = 63/372 (16%), Positives = 126/372 (33%), Gaps = 53/372 (14%)

Query: 119 HLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGIL------QLPKAKHDFLHHL 172
           H+ Y+DLS N +              L+ L ++  +   ++       L       L  L
Sbjct: 31  HVNYVDLSLNSI-AELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSS-----LIIL 84

Query: 173 DISCNNFRGKLPHNMGVILQKLMYMDISKNCF-EGNIPYSA-GEMKELSLLDLSRNYFSG 230
            +  N F  +L       L  L  + +++       +  +    +  L +L L  N    
Sbjct: 85  KLDYNQFL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKK 143

Query: 231 GLSQSVVTGCFSLELLDLSNNNF----EGQFFS------EYMNLTRLRHLYFENNNFSGK 280
               S         +LDL+ N      E    +        + L+ +            +
Sbjct: 144 IQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWE 203

Query: 281 IKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNH-------LEGNVPVQ 333
                  +TS+  LD+S N     +     +  +  +I S+  ++               
Sbjct: 204 KCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKD 263

Query: 334 LNNLE-------RLRILDISENRLSG-PIASSLNLSSVEHLSLQKNALNGLIPGELFRSC 385
            +N          ++  D+S++++     +   + + +E L+L +N +N +     F   
Sbjct: 264 PDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDN-AFWGL 322

Query: 386 -KLVTLNLRDNTFSGRIPHQINEH-SNLRFLLLGGNHLQGPIP----DQLCQLQKLAMMD 439
             L+ LNL  N     I  ++ E+   L  L L  NH++  +       L  L++L    
Sbjct: 323 THLLKLNLSQNFLG-SIDSRMFENLDKLEVLDLSYNHIRA-LGDQSFLGLPNLKEL---A 377

Query: 440 LSRNKFSGSIPP 451
           L  N+   S+P 
Sbjct: 378 LDTNQLK-SVPD 388

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 42.8 bits (101), Expect = 3e-04
 Identities = 47/286 (16%), Positives = 86/286 (30%), Gaps = 48/286 (16%)

Query: 340 LRILDISENRLSG-PIASSLNLSSVEHLSLQKNALNGLIPGELFRS-CKLVTLNLRDNTF 397
           +  +D+S N ++     S   L  ++ L +++     +I    FR    L+ L L  N F
Sbjct: 32  VNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF 91

Query: 398 SGRIPHQINEH-SNLRFLLLGGNHLQGPI--PDQLCQLQKLAMMDLSRNKFSGSIPPCFA 454
             ++        +NL  L L   +L G +   +    L  L M+ L  N     I P   
Sbjct: 92  L-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIK-KIQP--- 146

Query: 455 NVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDER 514
                       +   + +   LD       L  N+  +                     
Sbjct: 147 ------ASFFLNM--RRFH--VLD-------LTFNKVKSICEEDLLNFQGKHFT------ 183

Query: 515 VEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSI 574
                       +   S     T  D++   L  E   +  +  +I  L+LS N    S+
Sbjct: 184 -----------LLRLSSI----TLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESM 228

Query: 575 PESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSG 620
            + F +      +       +  +       NF    N ++  L  
Sbjct: 229 AKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEA 274

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 97.3 bits (243), Expect = 3e-22
 Identities = 51/331 (15%), Positives = 102/331 (30%), Gaps = 30/331 (9%)

Query: 16  LKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLL 75
             + +  + L    +        V+S        D +  +          AN +  +   
Sbjct: 8   HHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWH-----SAWRQANSNNPQIET 62

Query: 76  LSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFP 135
            + R                 + L L    L   +PD      HL+++ +    L+   P
Sbjct: 63  RTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELP 120

Query: 136 TWLLRNNPKLEVLLLKNNSF----SGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVI- 190
              ++    LE L L  N      + I  L +     L  L I       +LP  +    
Sbjct: 121 DT-MQQFAGLETLTLARNPLRALPASIASLNR-----LRELSIRACPELTELPEPLASTD 174

Query: 191 -------LQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSL 243
                  L  L  + +       ++P S   ++ L  L +  +  S  L  + +     L
Sbjct: 175 ASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPA-IHHLPKL 231

Query: 244 ELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSG 303
           E LDL        +   +     L+ L  ++ +    +   +   T L+ LD+   +   
Sbjct: 232 EELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLS 291

Query: 304 HIPHWMGNFSSELEILSMSKNHLEGNVPVQL 334
            +P  +    +   I+ +   HL+  +    
Sbjct: 292 RLPSLIAQLPA-NCIILVP-PHLQAQLDQHR 320

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 96.6 bits (241), Expect = 7e-22
 Identities = 51/308 (16%), Positives = 103/308 (33%), Gaps = 27/308 (8%)

Query: 164 AKHDFLHH------LDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKE 217
           + H   HH      L    +         +    Q+    D ++     +  +       
Sbjct: 3   SSHHHHHHSSGRENLYFQGSTALRPYHDVLSQ-WQRHYNADRNRW----HSAWRQANSNN 57

Query: 218 LSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNF 277
             +   +                     L+L +     QF  +   L+ L+H+  +    
Sbjct: 58  PQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGL 116

Query: 278 SGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSK-NHLE--------G 328
             ++ D +     L+ L ++ N L   +P  + + +  L  LS+     L          
Sbjct: 117 M-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNR-LRELSIRACPELTELPEPLAST 173

Query: 329 NVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLV 388
           +   +   L  L+ L +    +    AS  NL +++ L ++ + L+ L    +    KL 
Sbjct: 174 DASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSAL-GPAIHHLPKLE 232

Query: 389 TLNLRDNTFSGRIPHQINEHSNLRFL-LLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSG 447
            L+LR  T     P      + L+ L L   ++L   +P  + +L +L  +DL       
Sbjct: 233 ELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLT-LPLDIHRLTQLEKLDLRGCVNLS 291

Query: 448 SIPPCFAN 455
            +P   A 
Sbjct: 292 RLPSLIAQ 299

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 92.7 bits (231), Expect = 1e-20
 Identities = 52/339 (15%), Positives = 100/339 (29%), Gaps = 30/339 (8%)

Query: 96  LIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSF 155
              L          Y D L         D +          W   N+   ++      + 
Sbjct: 14  RENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSA-----WRQANSNNPQIETRTGRAL 68

Query: 156 SGIL-QLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGE 214
                 L  A       L++       + P      L  L +M I        +P +  +
Sbjct: 69  KATADLLEDATQPGRVALELRSVPLP-QFPDQAFR-LSHLQHMTIDAAGLM-ELPDTMQQ 125

Query: 215 MKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFEN 274
              L  L L+RN     L  S+      L  L +                  L  L    
Sbjct: 126 FAGLETLTLARNPLRA-LPASI-ASLNRLRELSIRACP-------------ELTELPEPL 170

Query: 275 NNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQL 334
            +     +   L   +LQ L +    +   +P  + N  + L+ L +  + L   +   +
Sbjct: 171 ASTDASGEHQGL--VNLQSLRLEWTGIR-SLPASIANLQN-LKSLKIRNSPLSA-LGPAI 225

Query: 335 NNLERLRILDISENRLSGPIASSL-NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLR 393
           ++L +L  LD+                + ++ L L+  +    +P ++ R  +L  L+LR
Sbjct: 226 HHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLR 285

Query: 394 DNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQL 432
                 R+P  I +      +L+  +        +    
Sbjct: 286 GCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPVAR 324

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 90.8 bits (226), Expect = 6e-20
 Identities = 57/313 (18%), Positives = 100/313 (31%), Gaps = 55/313 (17%)

Query: 307 HWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHL 366
           H   + SS  E L    +         L+  +R    D +    +   A   N ++ +  
Sbjct: 5   HHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQA---NSNNPQIE 61

Query: 367 SLQKNALNGLIPG-ELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPI 425
           +    AL       E       V L LR      + P Q    S+L+ + +    L   +
Sbjct: 62  TRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLME-L 119

Query: 426 PDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNS-PELDEEIEFG 484
           PD + Q   L  + L+RN    ++P   A++   R      L+        EL E +   
Sbjct: 120 PDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRE-----LSIRACPELTELPEPL--- 170

Query: 485 SLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCN 544
              +  +S    G    L  L+                                L L   
Sbjct: 171 --ASTDASGEHQG----LVNLQS-------------------------------LRLEWT 193

Query: 545 QLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTA 604
            +   +P+ I  LQ + +L + N+ LS ++  +  +L  +E LD+         PP    
Sbjct: 194 GIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGG 251

Query: 605 LNFLSIFNVSYNN 617
              L    +   +
Sbjct: 252 RAPLKRLILKDCS 264

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 86.2 bits (214), Expect = 2e-18
 Identities = 55/361 (15%), Positives = 102/361 (28%), Gaps = 52/361 (14%)

Query: 34  GSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPT 93
           GS      + +  E L    +       L     H  L         +     +      
Sbjct: 2   GSSHHHHHHSSGRENLYFQGST-----ALRPY--HDVLSQWQRHYNADRNRWHSAWRQAN 54

Query: 94  SQLIVLGLTKCNLNGSYPDFL--LHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLK 151
           S    +         +  D L    Q     L+L    L   FP                
Sbjct: 55  SNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFP---------------- 97

Query: 152 NNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYS 211
                   +L       L H+ I       +LP  M      L  + +++N     +P S
Sbjct: 98  ----DQAFRLSH-----LQHMTIDAAGLM-ELPDTMQQ-FAGLETLTLARNPLR-ALPAS 145

Query: 212 AGEMKELSLLDLSRN--------YFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMN 263
              +  L  L +             +   +     G  +L+ L L          +   N
Sbjct: 146 IASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIAN 204

Query: 264 LTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMS- 322
           L  L+ L   N+  S  +   +     L+ LD+       + P   G  +  L+ L +  
Sbjct: 205 LQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAP-LKRLILKD 262

Query: 323 KNHLEGNVPVQLNNLERLRILDISENRLSGPIASSL-NLSSVEHLSLQKNALNGLIPGEL 381
            ++L   +P+ ++ L +L  LD+        + S +  L +   + +  +    L     
Sbjct: 263 CSNLL-TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRP 321

Query: 382 F 382
            
Sbjct: 322 V 322

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 62.3 bits (152), Expect = 2e-10
 Identities = 16/86 (18%), Positives = 35/86 (40%), Gaps = 3/86 (3%)

Query: 539 LDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQI 598
           L+L    L  + P    +L  +  + +    L   +P++      +E+L ++ N L   +
Sbjct: 86  LELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-AL 142

Query: 599 PPQLTALNFLSIFNVSYNNLSGRTPD 624
           P  + +LN L   ++         P+
Sbjct: 143 PASIASLNRLRELSIRACPELTELPE 168

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 56.9 bits (138), Expect = 8e-09
 Identities = 19/82 (23%), Positives = 30/82 (36%), Gaps = 2/82 (2%)

Query: 539 LDLS-CNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQ 597
           LDL  C  L    P   G    +  L L + S   ++P     L  +E LD+       +
Sbjct: 234 LDLRGCTALR-NYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSR 292

Query: 598 IPPQLTALNFLSIFNVSYNNLS 619
           +P  +  L    I  V  +  +
Sbjct: 293 LPSLIAQLPANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 56.1 bits (136), Expect = 2e-08
 Identities = 13/80 (16%), Positives = 29/80 (36%), Gaps = 3/80 (3%)

Query: 539 LDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDIS-YNKLTGQ 597
           L +  + L+  +   I  L  +  L+L   +   + P  F     ++ L +   + L   
Sbjct: 211 LKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL-T 268

Query: 598 IPPQLTALNFLSIFNVSYNN 617
           +P  +  L  L   ++    
Sbjct: 269 LPLDIHRLTQLEKLDLRGCV 288

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 54.6 bits (132), Expect = 4e-08
 Identities = 17/90 (18%), Positives = 34/90 (37%), Gaps = 11/90 (12%)

Query: 539 LDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMI---------ESLDI 589
           L L+ N L   +P+ I  L  +  L++        +PE  ++             +SL +
Sbjct: 132 LTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRL 190

Query: 590 SYNKLTGQIPPQLTALNFLSIFNVSYNNLS 619
            +  +   +P  +  L  L    +  + LS
Sbjct: 191 EWTGIR-SLPASIANLQNLKSLKIRNSPLS 219

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 53.8 bits (130), Expect = 8e-08
 Identities = 21/90 (23%), Positives = 37/90 (41%), Gaps = 13/90 (14%)

Query: 539 LDLS-CNQLTGEIPSDIGQLQAILA---------LNLSNNSLSGSIPESFSNLKMIESLD 588
           L +  C +LT E+P  +    A            L L    +  S+P S +NL+ ++SL 
Sbjct: 155 LSIRACPELT-ELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLK 212

Query: 589 ISYNKLTGQIPPQLTALNFLSIFNVSYNNL 618
           I  + L+  + P +  L  L   ++     
Sbjct: 213 IRNSPLS-ALGPAIHHLPKLEELDLRGCTA 241

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 49.9 bits (120), Expect = 2e-06
 Identities = 13/68 (19%), Positives = 24/68 (35%), Gaps = 2/68 (2%)

Query: 539 LDLS-CNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQ 597
           L L  C+ L   +P DI +L  +  L+L        +P   + L     + +  +     
Sbjct: 258 LILKDCSNLL-TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQL 316

Query: 598 IPPQLTAL 605
              +  A 
Sbjct: 317 DQHRPVAR 324

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 98.8 bits (246), Expect = 1e-21
 Identities = 72/388 (18%), Positives = 132/388 (34%), Gaps = 49/388 (12%)

Query: 119 HLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNN 178
               L++  + L    P  L  +   +  L++ +N+ + +  LP      L  L++S N 
Sbjct: 41  GNAVLNVGESGL-TTLPDCLPAH---ITTLVIPDNNLTSLPALPPE----LRTLEVSGNQ 92

Query: 179 FRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVT 238
               LP      L +L                       L  L +  N  +     S+  
Sbjct: 93  LT-SLPVLPPG-LLELSIFSNPLTHLPALPS-------GLCKLWIFGNQLT-----SLPV 138

Query: 239 GCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISN 298
               L+ L +S+N       S     + L  L+  NN  +  +       + LQ L +S+
Sbjct: 139 LPPGLQELSVSDNQLA----SLPALPSELCKLWAYNNQLT-SLPMLP---SGLQELSVSD 190

Query: 299 NMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSL 358
           N L+  +P         L  L    N L  ++P   + L+ L    +S NRL+       
Sbjct: 191 NQLA-SLPTLPSE----LYKLWAYNNRLT-SLPALPSGLKEL---IVSGNRLTSLPVL-- 239

Query: 359 NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGG 418
             S ++ L +  N L  L P        L++L++  N  + R+P  +   S+   + L G
Sbjct: 240 -PSELKELMVSGNRLTSL-PMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEG 293

Query: 419 NHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELD 478
           N L       L ++           +F  +         +  + + D L  ++    E  
Sbjct: 294 NPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREG--EPA 351

Query: 479 EEIEFGSLGNNRSSNTMFGMWRWLSALE 506
               +   G   +++        LS  E
Sbjct: 352 PADRWHMFGQEDNADAFSLFLDRLSETE 379

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 93.4 bits (232), Expect = 5e-20
 Identities = 73/409 (17%), Positives = 130/409 (31%), Gaps = 81/409 (19%)

Query: 264 LTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSK 323
                 L    +  +  + D L     +  L I +N L+  +P         L  L +S 
Sbjct: 39  NNGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPALPPE----LRTLEVSG 90

Query: 324 NHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFR 383
           N L  ++PV    L  L I       L          S +  L +  N L  L P     
Sbjct: 91  NQLT-SLPVLPPGLLELSIFSNPLTHLPA------LPSGLCKLWIFGNQLTSL-PVLP-- 140

Query: 384 SCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRN 443
              L  L++ DN  +  +P      S L  L    N L   +P     LQ+L    +S N
Sbjct: 141 -PGLQELSVSDNQLA-SLPALP---SELCKLWAYNNQLTS-LPMLPSGLQEL---SVSDN 191

Query: 444 KFSGSIPPCFANVLSWRVGSDDVLNGSKLNS-PELDEEIEFGSLGNNRSSNTMFGMWRWL 502
           + + S+P   + +             ++L S P L   ++   +  NR           L
Sbjct: 192 QLA-SLPTLPSELYKLW------AYNNRLTSLPALPSGLKELIVSGNR-----------L 233

Query: 503 SALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILA 562
           ++L                            + +  L +S N+LT  +P     L    +
Sbjct: 234 TSL------------------------PVLPSELKELMVSGNRLT-SLPMLPSGLL---S 265

Query: 563 LNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRT 622
           L++  N L+  +PES  +L    ++++  N L+ +    L  +                 
Sbjct: 266 LSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITSA------PGYSGPII 318

Query: 623 PDKGQFATFDESSYRGNPSLCAWLIQQKYSRTLKPTTTQASGAEEEEEE 671
                 A+    +   + +   WL+  +             G E+  + 
Sbjct: 319 RFDMAGASAPRETRALHLAAADWLVPAREGEPAPADRWHMFGQEDNADA 367

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 91.1 bits (226), Expect = 3e-19
 Identities = 79/416 (18%), Positives = 135/416 (32%), Gaps = 82/416 (19%)

Query: 5   RNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSS 64
           R  +   +  CL N     +L++  + L  +LP  +     +  L +  NN      L+S
Sbjct: 27  RAAVVQKMRACLNN--GNAVLNVGESGLT-TLPDCL--PAHITTLVIPDNN------LTS 75

Query: 65  L-ANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYL 123
           L A   +L  L +S   N L       LP     +L L+  +   ++   L     L  L
Sbjct: 76  LPALPPELRTLEVS--GNQLTS-----LPVLPPGLLELSIFSNPLTHLPALPSG--LCKL 126

Query: 124 DLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKL 183
            +  N+L  + P       P L+ L + +N  + +  LP      L  L    N     L
Sbjct: 127 WIFGNQL-TSLPVLP----PGLQELSVSDNQLASLPALPSE----LCKLWAYNNQLT-SL 176

Query: 184 PHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSL 243
           P         L  + +S N    ++P    E+ +L   +          S         L
Sbjct: 177 PMLPS----GLQELSVSDNQLA-SLPTLPSELYKLWAYNNRLTSLPALPS--------GL 223

Query: 244 ELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSG 303
           + L +S N            LT L                     + L+ L +S N L+ 
Sbjct: 224 KELIVSGN-----------RLTSLPV-----------------LPSELKELMVSGNRLT- 254

Query: 304 HIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSV 363
            +P         L  LS+ +N L   +P  L +L     +++  N LS     +L   + 
Sbjct: 255 SLPMLPSG----LLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITS 309

Query: 364 EHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGN 419
                       +      R  + + L   D      +P +  E +      + G 
Sbjct: 310 APGYSGPIIRFDMAGASAPRETRALHLAAADWL----VPAREGEPAPADRWHMFGQ 361

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 88.4 bits (219), Expect = 2e-18
 Identities = 68/396 (17%), Positives = 115/396 (29%), Gaps = 52/396 (13%)

Query: 19  LTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLST 78
              +  L I  N L  SLP++   L +L   ++S N      P        +L       
Sbjct: 60  PAHITTLVIPDNNLT-SLPALPPELRTL---EVSGNQLT-SLP-VLPPGLLELSIFSNP- 112

Query: 79  RNNTLHVKTENWLPT--SQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPT 136
                       LP   S L  L +    L  S P        L+ L +S N+L  + P 
Sbjct: 113 ---------LTHLPALPSGLCKLWIFGNQLT-SLPVLPP---GLQELSVSDNQL-ASLPA 158

Query: 137 WLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMY 196
                  +L  L   NN  + +  LP      L  L +S N     LP        +L  
Sbjct: 159 LP----SELCKLWAYNNQLTSLPMLPSG----LQELSVSDNQLA-SLPTLPS----ELYK 205

Query: 197 MDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQ 256
           +    N    ++P     +KEL +            S+        L+ L +S N     
Sbjct: 206 LWAYNNRLT-SLPALPSGLKELIVSGNRLTSLPVLPSE--------LKELMVSGNRLTS- 255

Query: 257 FFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSEL 316
                   + L  L    N  + ++ + L+  +S   +++  N LS      +   +S  
Sbjct: 256 -LPM--LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITS-A 310

Query: 317 EILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGL 376
              S      +           R   L  ++  +                  + NA    
Sbjct: 311 PGYSGPIIRFD-MAGASAPRETRALHLAAADWLVPAREGEPAPADRWHMFGQEDNADAFS 369

Query: 377 IPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLR 412
           +  +     +    +            Q+ E   LR
Sbjct: 370 LFLDRLSETENFIKDAGFKAQISSWLAQLAEDEALR 405

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 84.6 bits (209), Expect = 4e-17
 Identities = 67/399 (16%), Positives = 115/399 (28%), Gaps = 84/399 (21%)

Query: 240 CFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNN 299
                +L++  +        + +    +  L   +NN +  +         L+ L++S N
Sbjct: 39  NNGNAVLNVGESGLT--TLPDCL-PAHITTLVIPDNNLT-SLPALP---PELRTLEVSGN 91

Query: 300 MLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLN 359
            L+  +P        EL I S    HL             L  L I  N+L+        
Sbjct: 92  QLT-SLPVLPPGLL-ELSIFSNPLTHLP-------ALPSGLCKLWIFGNQLTSLPVLPPG 142

Query: 360 LSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGN 419
           L   + LS+  N L  L P       +L  L   +N  +  +P      S L+ L +  N
Sbjct: 143 L---QELSVSDNQLASL-PALP---SELCKLWAYNNQLT-SLPMLP---SGLQELSVSDN 191

Query: 420 HLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFAN--VLSWRVGSDDVLNGSKLNSPEL 477
            L   +P    +L KL       N+ + S+P   +    L         ++G++L S  L
Sbjct: 192 QLAS-LPTLPSELYKL---WAYNNRLT-SLPALPSGLKELI--------VSGNRLTS--L 236

Query: 478 DEEIEFGSLGNNRSSNTMFGMW-RWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRV 536
                   L     S           S L                               
Sbjct: 237 PVLP--SELKELMVSGNRLTSLPMLPSGLLS----------------------------- 265

Query: 537 TGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLT- 595
             L +  NQLT  +P  +  L +   +NL  N LS    ++   +    S       +  
Sbjct: 266 --LSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREI---TSAPGYSGPIIR 319

Query: 596 -GQIPPQLTALNFLSIFNVSYNNLSGRTPDKGQFATFDE 633
                              +   +  R  +      +  
Sbjct: 320 FDMAGASAPRETRALHLAAADWLVPAREGEPAPADRWHM 358

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 43.3 bits (102), Expect = 3e-04
 Identities = 21/98 (21%), Positives = 34/98 (34%), Gaps = 23/98 (23%)

Query: 2   NLERNFIGS--PLITCLKNL--------------TRLKILDISSNQLNGSLPSVISNLTS 45
            +  N + S   L + LK L              + L  L +  NQL   LP  + +L+S
Sbjct: 227 IVSGNRLTSLPVLPSELKELMVSGNRLTSLPMLPSGLLSLSVYRNQLT-RLPESLIHLSS 285

Query: 46  LEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTL 83
              ++L  N      PLS     +  E       +  +
Sbjct: 286 ETTVNLEGN------PLSERTLQALREITSAPGYSGPI 317

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 89.3 bits (222), Expect = 1e-19
 Identities = 56/259 (21%), Positives = 92/259 (35%), Gaps = 29/259 (11%)

Query: 119 HLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNN 178
               L+L  NKL  + P  +     +L  L L +N               L        +
Sbjct: 29  SATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNG--------------LSFKGCCSQS 73

Query: 179 FRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVT 238
             G            L Y+D+S N     +  +   +++L  LD   +        SV  
Sbjct: 74  DFG---------TTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL 123

Query: 239 GCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSS-TSLQVLDIS 297
              +L  LD+S+ +    F   +  L+ L  L    N+F       + +   +L  LD+S
Sbjct: 124 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 183

Query: 298 NNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASS 357
              L   +     N  S L++L+MS N+           L  L++LD S N +       
Sbjct: 184 QCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE 242

Query: 358 LN--LSSVEHLSLQKNALN 374
           L    SS+  L+L +N   
Sbjct: 243 LQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 84.3 bits (209), Expect = 6e-18
 Identities = 49/223 (21%), Positives = 79/223 (35%), Gaps = 9/223 (4%)

Query: 242 SLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGK-IKDGLLSS-TSLQVLDISNN 299
           S   L+L +N  +      +  LT+L  L   +N  S K          TSL+ LD+S N
Sbjct: 29  SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88

Query: 300 MLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQL-NNLERLRILDISENRLSG-PIASS 357
            +   +          LE L    ++L+      +  +L  L  LDIS            
Sbjct: 89  GVI-TMSSNFLGLEQ-LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 146

Query: 358 LNLSSVEHLSLQKNALNGLIPGELFRSC-KLVTLNLRDNTFSGRIPHQINEH-SNLRFLL 415
             LSS+E L +  N+       ++F     L  L+L       ++        S+L+ L 
Sbjct: 147 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLN 205

Query: 416 LGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLS 458
           +  N+           L  L ++D S N    S      +  S
Sbjct: 206 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPS 248

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 83.5 bits (207), Expect = 1e-17
 Identities = 62/245 (25%), Positives = 92/245 (37%), Gaps = 23/245 (9%)

Query: 20  TRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANH--SKLEGLLLS 77
           +    L++ SN+L      V   LT L  L LS N         S ++   + L+ L LS
Sbjct: 28  SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLS-FKGCCSQSDFGTTSLKYLDLS 86

Query: 78  TRNNTLHVKTENWLPTSQLIVLGLTKCNLNG-SYPDFLLHQYHLKYLDLSHNKLVGNFPT 136
              N +   + N+L   QL  L     NL   S     L   +L YLD+SH         
Sbjct: 87  --FNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR-VAFN 143

Query: 137 WLLRNNPKLEVLLLKNNSFSGILQ------LPKAKHDFLHHLDISCNNFRGKLPHNMGVI 190
            +      LEVL +  NSF           L       L  LD+S      +L       
Sbjct: 144 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN-----LTFLDLSQCQLE-QLSPTAFNS 197

Query: 191 LQKLMYMDISKNCFEGNIPYSA-GEMKELSLLDLSRNYFSGGLSQSVVTGCF-SLELLDL 248
           L  L  +++S N F  ++       +  L +LD S N+      +  +     SL  L+L
Sbjct: 198 LSSLQVLNMSHNNFF-SLDTFPYKCLNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNL 255

Query: 249 SNNNF 253
           + N+F
Sbjct: 256 TQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 82.8 bits (205), Expect = 2e-17
 Identities = 56/242 (23%), Positives = 91/242 (37%), Gaps = 17/242 (7%)

Query: 91  LPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKL-VGNFPTWLLRNNPKLEVLL 149
           +P+S    L L    L             L  L LS N L      +        L+ L 
Sbjct: 26  IPSS-ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLD 84

Query: 150 LKNNSFSGILQLPKA--KHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGN 207
           L  N    ++ +       + L HLD   +N +     ++ + L+ L+Y+DIS       
Sbjct: 85  LSFNG---VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR-V 140

Query: 208 IPYSA-GEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNF---EGQFFSEYMN 263
                   +  L +L ++ N F       + T   +L  LDLS           F+   +
Sbjct: 141 AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN---S 197

Query: 264 LTRLRHLYFENNNFSGKIKDGLLSS-TSLQVLDISNNMLSGHIPHWMGNFSSELEILSMS 322
           L+ L+ L   +NNF   +         SLQVLD S N +       + +F S L  L+++
Sbjct: 198 LSSLQVLNMSHNNFF-SLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLT 256

Query: 323 KN 324
           +N
Sbjct: 257 QN 258

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 75.0 bits (185), Expect = 8e-15
 Identities = 34/156 (21%), Positives = 58/156 (37%), Gaps = 2/156 (1%)

Query: 2   NLERNFIGS-PLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMF 60
           + + + +      +   +L  L  LDIS      +   + + L+SLE L ++ N+F+  F
Sbjct: 107 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF 166

Query: 61  PLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHL 120
                     L  L LS +     +    +   S L VL ++  N              L
Sbjct: 167 LPDIFTELRNLTFLDLS-QCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSL 225

Query: 121 KYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFS 156
           + LD S N ++ +    L      L  L L  N F+
Sbjct: 226 QVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 72.0 bits (177), Expect = 9e-14
 Identities = 41/169 (24%), Positives = 70/169 (41%), Gaps = 8/169 (4%)

Query: 288 STSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLE--GNVPVQLNNLERLRILDI 345
            +S   L++ +N L           +  L  LS+S N L   G           L+ LD+
Sbjct: 27  PSSATRLELESNKLQSLPHGVFDKLTQ-LTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85

Query: 346 SENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSC-KLVTLNLRDNTFSGRIPHQ 404
           S N +    ++ L L  +EHL  Q + L  +    +F S   L+ L++          + 
Sbjct: 86  SFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR-VAFNG 144

Query: 405 INEH-SNLRFLLLGGN-HLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPP 451
           I    S+L  L + GN   +  +PD   +L+ L  +DLS+ +    + P
Sbjct: 145 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSP 192

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 67.3 bits (165), Expect = 3e-12
 Identities = 48/311 (15%), Positives = 94/311 (30%), Gaps = 64/311 (20%)

Query: 290 SLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENR 349
           S   +  ++  L+  +P       S    L +  N L+       + L +L  L +S N 
Sbjct: 8   SGTEIRCNSKGLT-SVPT---GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNG 63

Query: 350 LSGPIASS---LNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQI- 405
           LS     S      +S+++L L  N +   +        +L  L+ + +         + 
Sbjct: 64  LSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVF 122

Query: 406 NEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPP-CFANVLSWRVGSD 464
               NL +L +   H +         L  L ++ ++ N F  +  P  F  +        
Sbjct: 123 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL-------- 174

Query: 465 DVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNR 524
                  L    LD       L   +        +  LS+L+                  
Sbjct: 175 -----RNLT--FLD-------LSQCQLEQLSPTAFNSLSSLQV----------------- 203

Query: 525 YEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNL-KM 583
                         L++S N            L ++  L+ S N +  S  +   +    
Sbjct: 204 --------------LNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSS 249

Query: 584 IESLDISYNKL 594
           +  L+++ N  
Sbjct: 250 LAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 45.8 bits (109), Expect = 3e-05
 Identities = 23/96 (23%), Positives = 42/96 (43%), Gaps = 12/96 (12%)

Query: 531 SNVNRVTGLDLSCNQLT-GEIPSDIGQ-LQAILALNLSNNSLSGSIPESFSNLKMIESLD 588
             + ++T L LS N L+     S       ++  L+LS N +  ++  +F  L+ +E LD
Sbjct: 49  DKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLD 107

Query: 589 ISYNKLTGQIPPQ-----LTALNFLSIFNVSYNNLS 619
             ++ L  Q+        L  L +L I   S+ +  
Sbjct: 108 FQHSNLK-QMSEFSVFLSLRNLIYLDI---SHTHTR 139

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 45.4 bits (108), Expect = 3e-05
 Identities = 23/96 (23%), Positives = 41/96 (42%), Gaps = 4/96 (4%)

Query: 536 VTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLS--GSIPESFSNLKMIESLDISYNK 593
            T L+L  N+L         +L  +  L+LS+N LS  G   +S      ++ LD+S+N 
Sbjct: 30  ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG 89

Query: 594 LTGQIPPQLTALNFLSIFNVSYNNLSGRTPDKGQFA 629
           +   +      L  L   +  ++NL  +  +   F 
Sbjct: 90  VI-TMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFL 123

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 17/83 (20%), Positives = 33/83 (39%), Gaps = 2/83 (2%)

Query: 539 LDLSCNQLTGEIPSDI-GQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQ 597
           LD   + L       +   L+ ++ L++S+     +    F+ L  +E L ++ N     
Sbjct: 106 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 165

Query: 598 IPPQ-LTALNFLSIFNVSYNNLS 619
             P   T L  L+  ++S   L 
Sbjct: 166 FLPDIFTELRNLTFLDLSQCQLE 188

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 42.7 bits (101), Expect = 3e-04
 Identities = 17/88 (19%), Positives = 33/88 (37%), Gaps = 5/88 (5%)

Query: 539 LDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQ- 597
           +  +   LT  +P+ I    +   L L +N L       F  L  +  L +S N L+ + 
Sbjct: 12  IRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKG 68

Query: 598 -IPPQLTALNFLSIFNVSYNNLSGRTPD 624
                      L   ++S+N +   + +
Sbjct: 69  CCSQSDFGTTSLKYLDLSFNGVITMSSN 96

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 88.9 bits (221), Expect = 1e-18
 Identities = 82/476 (17%), Positives = 136/476 (28%), Gaps = 99/476 (20%)

Query: 1   MNLERNFIGSP-LITCLKNLTRLKILDISSNQLN----GSLPSVISNLTSLEYLDLSHNN 55
           ++++   +        L  L + +++ +    L       + S +    +L  L+L  N 
Sbjct: 8   LDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE 67

Query: 56  F--EGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSY--- 110
               G+  +                             P+ ++  L L  C L G+    
Sbjct: 68  LGDVGVHCVLQGLQT-----------------------PSCKIQKLSLQNCCLTGAGCGV 104

Query: 111 -PDFLLHQYHLKYLDLSHNKL----VGNFPTWLLRNNPKLEVLLLKNNSFS--GILQLPK 163
               L     L+ L LS N L    +      LL    +LE L L+  S S      L  
Sbjct: 105 LSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLAS 164

Query: 164 A--KHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLL 221
                     L +S N+         GV  + L        C             +L  L
Sbjct: 165 VLRAKPDFKELTVSNNDIN-----EAGV--RVLCQGLKDSPC-------------QLEAL 204

Query: 222 DLSRNYFSGGLSQ---SVVTGCFSLELLDLSNNNFEG---QFFSEYM--NLTRLRHLYFE 273
            L     +    +    +V    SL  L L +N             +    +RLR L+  
Sbjct: 205 KLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIW 264

Query: 274 NNNFSGK----IKDGLLSSTSLQVLDISNNMLSG----HIPHWMGNFSSELEILSMSKNH 325
               + K    +   L +  SL+ L ++ N L       +   +     +LE L +    
Sbjct: 265 ECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCS 324

Query: 326 LEGNVPVQ-----LNNLERLRILDISENRLSGPIASSL------NLSSVEHLSLQKNAL- 373
                        L     L  L IS NRL       L        S +  L L    + 
Sbjct: 325 F-TAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVS 383

Query: 374 -NGLIP-GELFRSCK-LVTLNLRDNTFSGRIPHQINE-----HSNLRFLLLGGNHL 421
            +          +   L  L+L +N        Q+ E        L  L+L   + 
Sbjct: 384 DSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYW 439

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 73.8 bits (182), Expect = 6e-14
 Identities = 75/445 (16%), Positives = 133/445 (29%), Gaps = 106/445 (23%)

Query: 44  TSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTK 103
             ++ LD+             L    + + + L           +  L  ++   +    
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLD----------DCGLTEARCKDIS--- 49

Query: 104 CNLNGSYPDFLLHQYHLKYLDLSHNKL----VGNFPTWLLRNNPKLEVLLLKNNSFS--G 157
                     L     L  L+L  N+L    V      L   + K++ L L+N   +  G
Sbjct: 50  --------SALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAG 101

Query: 158 ILQLPKA--KHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEM 215
              L         L  L +S N          G+  Q L    +   C            
Sbjct: 102 CGVLSSTLRTLPTLQELHLSDNLLGDA-----GL--QLLCEGLLDPQC------------ 142

Query: 216 KELSLLDLSRNYFSGGLSQ---SVVTGCFSLELLDLSNNNFE---GQFFSEYM--NLTRL 267
             L  L L     S    +   SV+      + L +SNN+      +   + +  +  +L
Sbjct: 143 -RLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQL 201

Query: 268 RHLYFENNNFSGK----IKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSK 323
             L  E+   +      +   + S  SL+ L + +N L              +  L    
Sbjct: 202 EALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG----------DVGMAELCPG- 250

Query: 324 NHLEGNVPVQLNNLERLRILDISENRLSGP----IASSL-NLSSVEHLSLQKNAL----- 373
                     L+   RLR L I E  ++      +   L    S++ LSL  N L     
Sbjct: 251 ---------LLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGA 301

Query: 374 NGLIPGELFRSCKLVTLNLRDNTFSGR----IPHQINEHSNLRFLLLGGNHLQGP----- 424
             L    L   C+L +L ++  +F+          + ++  L  L +  N L+       
Sbjct: 302 RLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVREL 361

Query: 425 ---IPDQLCQLQKLAMMDLSRNKFS 446
              +      L+ L    L+    S
Sbjct: 362 CQGLGQPGSVLRVL---WLADCDVS 383

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 52.7 bits (127), Expect = 3e-07
 Identities = 45/181 (24%), Positives = 70/181 (38%), Gaps = 28/181 (15%)

Query: 2   NLERNFIGSP----LITCLKNLTRLKILDISSNQLNGS-----LPSVISNLTSLEYLDLS 52
            +    I +     L   L+    LK L ++ N+L          +++     LE L + 
Sbjct: 262 WIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVK 321

Query: 53  HNNF--EGMFPLSS-LANHSKLEGLLLSTRNNTLHVKTENWL------PTSQLIVLGLTK 103
             +F        SS LA +  L  L +S  NN L       L      P S L VL L  
Sbjct: 322 SCSFTAACCSHFSSVLAQNRFLLELQIS--NNRLEDAGVRELCQGLGQPGSVLRVLWLAD 379

Query: 104 CNLNGSYPDF----LLHQYHLKYLDLSHNKL----VGNFPTWLLRNNPKLEVLLLKNNSF 155
           C+++ S        LL  + L+ LDLS+N L    +      + +    LE L+L +  +
Sbjct: 380 CDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYW 439

Query: 156 S 156
           S
Sbjct: 440 S 440

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 42.3 bits (100), Expect = 5e-04
 Identities = 40/193 (20%), Positives = 71/193 (36%), Gaps = 49/193 (25%)

Query: 288 STSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISE 347
           S  +Q LDI    LS           +    L              L  L++ +++ + +
Sbjct: 2   SLDIQSLDIQCEELS----------DARWAEL--------------LPLLQQCQVVRLDD 37

Query: 348 NRLS----GPIASSL-NLSSVEHLSLQKNALNG-----LIPGELFRSCKLVTLNLRDNTF 397
             L+      I+S+L    ++  L+L+ N L       ++ G    SCK+  L+L++   
Sbjct: 38  CGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCL 97

Query: 398 SGR----IPHQINEHSNLRFLLLGGNHLQGP--------IPDQLCQLQKLAMMDLSRNKF 445
           +G     +   +     L+ L L  N L           + D  C+L+KL    L     
Sbjct: 98  TGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKL---QLEYCSL 154

Query: 446 SGSIPPCFANVLS 458
           S +     A+VL 
Sbjct: 155 SAASCEPLASVLR 167

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 86.6 bits (215), Expect = 1e-18
 Identities = 51/288 (17%), Positives = 99/288 (34%), Gaps = 47/288 (16%)

Query: 119 HLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNN 178
           HL  L L +NK+             KL+ L +  N    ++++P      L  L I  N 
Sbjct: 79  HLYALVLVNNKIS-KIHEKAFSPLRKLQKLYISKNH---LVEIPPNLPSSLVELRIHDNR 134

Query: 179 FRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRN-YFSGGLSQSVV 237
            R                  + K  F G        ++ ++ +++  N   + G      
Sbjct: 135 IR-----------------KVPKGVFSG--------LRNMNCIEMGGNPLENSGFEPGAF 169

Query: 238 TGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSS-TSLQVLDI 296
            G   L  L +S          + +    L  L+ ++N     I+   L   + L  L +
Sbjct: 170 DGL-KLNYLRISEAKL--TGIPKDL-PETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGL 224

Query: 297 SNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLS----- 351
            +N +   I +   +F   L  L +  N L   VP  L +L+ L+++ +  N ++     
Sbjct: 225 GHNQIR-MIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVN 282

Query: 352 --GPIASSLNLSSVEHLSLQKNALNGL-IPGELFRS-CKLVTLNLRDN 395
              P+   +  +    +SL  N +    +    FR     + +   + 
Sbjct: 283 DFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 79.7 bits (197), Expect = 3e-16
 Identities = 57/342 (16%), Positives = 99/342 (28%), Gaps = 76/342 (22%)

Query: 20  TRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTR 79
               +LD+ +N ++         L  L  L L +N         + +   KL+ L +S  
Sbjct: 54  PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS-KIHEKAFSPLRKLQKLYIS-- 110

Query: 80  NNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLL 139
            N              L+ +           P  L     L  L +  N++    P  + 
Sbjct: 111 KN-------------HLVEI-----------PPNLPS--SLVELRIHDNRIR-KVPKGVF 143

Query: 140 RNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDI 199
                +  + +  N               L +       F G           KL Y+ I
Sbjct: 144 SGLRNMNCIEMGGNP--------------LENSGFEPGAFDG----------LKLNYLRI 179

Query: 200 SKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNF----EG 255
           S+      IP      + L+ L L  N     +    +     L  L L +N       G
Sbjct: 180 SEAKLT-GIP--KDLPETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRMIENG 235

Query: 256 QFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSE 315
                   L  LR L+ +NN  S ++  GL     LQV+ +  N ++    +        
Sbjct: 236 SL----SFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFG 290

Query: 316 LEILSMSKNHLEGNVPVQL--------NNLERLRILDISENR 349
           ++    +   L  N PV            +     +     +
Sbjct: 291 VKRAYYNGISLFNN-PVPYWEVQPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 77.4 bits (191), Expect = 2e-15
 Identities = 59/360 (16%), Positives = 108/360 (30%), Gaps = 86/360 (23%)

Query: 119 HLKYLDLSHNKLV---GNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDIS 175
           HL+ +  S   L                   +L L+NN  S + +        L+ L + 
Sbjct: 34  HLRVVQCSDLGLKAVPKEISPDT-------TLLDLQNNDISELRKDDFKGLQHLYALVLV 86

Query: 176 CNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQS 235
            N                     I +  F          +++L  L +S+N+        
Sbjct: 87  NNKIS-----------------KIHEKAFSP--------LRKLQKLYISKNHLV-----E 116

Query: 236 VVTGCF-SLELLDLSNNNF----EGQFFSEYMNLTRLRHLYFENNNF-SGKIKDGLLSST 289
           +      SL  L + +N      +G F      L  +  +    N   +   + G     
Sbjct: 117 IPPNLPSSLVELRIHDNRIRKVPKGVF----SGLRNMNCIEMGGNPLENSGFEPGAFDGL 172

Query: 290 SLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENR 349
            L  L IS   L+  IP       + L  L +  N ++      L    +L  L +  N+
Sbjct: 173 KLNYLRISEAKLT-GIPK--DLPET-LNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQ 228

Query: 350 LSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHS 409
           +                 ++  +L+ L          L  L+L +N  S R+P  + +  
Sbjct: 229 IR---------------MIENGSLSFLP--------TLRELHLDNNKLS-RVPAGLPDLK 264

Query: 410 NLRFLLLGGNHLQGPIPDQLCQLQ------KLAMMDLSRNKFS-GSIPPC-FANVLSWRV 461
            L+ + L  N++     +  C +           + L  N      + P  F  V     
Sbjct: 265 LLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLA 324

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 73.5 bits (181), Expect = 3e-14
 Identities = 64/345 (18%), Positives = 116/345 (33%), Gaps = 71/345 (20%)

Query: 290 SLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENR 349
            L+V+  S+  L   +P      S +  +L +  N +          L+ L  L +  N+
Sbjct: 34  HLRVVQCSDLGLK-AVPK---EISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNK 89

Query: 350 LSG-PIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEH 408
           +S     +   L  ++ L + KN L   IP  L  S  LV L + DN          +  
Sbjct: 90  ISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLPSS--LVELRIHDNRIRKVPKGVFSGL 146

Query: 409 SNLRFLLLGGNHLQ-GPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSW-------- 459
            N+  + +GGN L+            KL  + +S  K +  IP      L+         
Sbjct: 147 RNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT-GIPKDLPETLNELHLDHNKI 205

Query: 460 -RVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIE 518
             +  +D+L  SKL    L        LG+N+      G   +L  L +           
Sbjct: 206 QAIELEDLLRYSKLY--RLG-------LGHNQIRMIENGSLSFLPTLRE----------- 245

Query: 519 FAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESF 578
                               L L  N+L+  +P+ +  L+ +  + L  N+++      F
Sbjct: 246 --------------------LHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDF 284

Query: 579 SNLKM------IESLDISYNKLT-GQIPPQ----LTALNFLSIFN 612
             +           + +  N +   ++ P     +T    +   N
Sbjct: 285 CPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGN 329

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 53.5 bits (129), Expect = 9e-08
 Identities = 25/154 (16%), Positives = 52/154 (33%), Gaps = 22/154 (14%)

Query: 1   MNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMF 60
           ++L+ N I +  +  L   ++L  L +  NQ+       +S L +L  L L +N      
Sbjct: 198 LHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RV 256

Query: 61  PLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHL 120
           P + L +   L+ + L    N +       +  +    +G            F + + + 
Sbjct: 257 P-AGLPDLKLLQVVYLH--TNNITK-----VGVNDFCPVG------------FGVKRAYY 296

Query: 121 KYLDLSHNKL-VGNFPTWLLRNNPKLEVLLLKNN 153
             + L +N +          R       +   N 
Sbjct: 297 NGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 45.4 bits (108), Expect = 4e-05
 Identities = 30/85 (35%), Positives = 43/85 (50%), Gaps = 5/85 (5%)

Query: 536 VTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLT 595
            T LDL  N ++     D   LQ + AL L NN +S    ++FS L+ ++ L IS N L 
Sbjct: 56  TTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV 115

Query: 596 GQIPPQL-TALNFLSIFNVSYNNLS 619
            +IPP L ++L  L I     N + 
Sbjct: 116 -EIPPNLPSSLVELRI---HDNRIR 136

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 41.9 bits (99), Expect = 5e-04
 Identities = 21/101 (20%), Positives = 40/101 (39%), Gaps = 7/101 (6%)

Query: 531 SNVNRVTGLDLSCNQLTGEIPSDI-GQLQAILALNLSNNSLSGSIPESFSNLKMIESLDI 589
             +  +  L L  N+++ +I       L+ +  L +S N L    P   S+L     L I
Sbjct: 75  KGLQHLYALVLVNNKIS-KIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSL---VELRI 130

Query: 590 SYNKLTGQIPPQ-LTALNFLSIFNVSYNNLSGRTPDKGQFA 629
             N++  ++P    + L  ++   +  N L     + G F 
Sbjct: 131 HDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFD 170

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 86.6 bits (215), Expect = 2e-18
 Identities = 63/335 (18%), Positives = 116/335 (34%), Gaps = 45/335 (13%)

Query: 119 HLKYLDLSHNKLV---GNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDIS 175
           HL+ +  S   L     + P           +L L+NN  + I          LH L + 
Sbjct: 32  HLRVVQCSDLGLEKVPKDLPPDT-------ALLDLQNNKITEIKDGDFKNLKNLHTLILI 84

Query: 176 CNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQS 235
            N    K+       L KL  + +SKN  +  +P      K L  L +  N  +  + +S
Sbjct: 85  NNKIS-KISPGAFAPLVKLERLYLSKNQLK-ELP--EKMPKTLQELRVHENEITK-VRKS 139

Query: 236 VVTGCFSLELLDLSNNNFEGQFFSEYM--NLTRLRHLYFENNNFSGKIKDGLLSSTSLQV 293
           V  G   + +++L  N  +           + +L ++   + N +  I  GL  S  L  
Sbjct: 140 VFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLPPS--LTE 196

Query: 294 LDISNNMLSGHIPHWMGNFS--SELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLS 351
           L +  N ++  +     +    + L  L +S N +       L N   LR L ++ N+L 
Sbjct: 197 LHLDGNKIT-KVDA--ASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV 253

Query: 352 GPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNL 411
                  +   ++ + L  N ++                 +  N F    P    + ++ 
Sbjct: 254 KVPGGLADHKYIQVVYLHNNNIS----------------AIGSNDFCP--PGYNTKKASY 295

Query: 412 RFLLLGGNHLQ-GPIPDQLCQ-LQKLAMMDLSRNK 444
             + L  N +Q   I     + +   A + L   K
Sbjct: 296 SGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 86.2 bits (214), Expect = 2e-18
 Identities = 67/341 (19%), Positives = 113/341 (33%), Gaps = 73/341 (21%)

Query: 20  TRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTR 79
               +LD+ +N++         NL +L  L L +N    + P  + A   KLE L LS  
Sbjct: 52  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISP-GAFAPLVKLERLYLS-- 108

Query: 80  NNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLL 139
            N L    E  +P +                         L+ L +  N++       + 
Sbjct: 109 KNQLKELPEK-MPKT-------------------------LQELRVHENEIT-KVRKSVF 141

Query: 140 RNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDI 199
               ++ V+ L  N               L    I    F+G         ++KL Y+ I
Sbjct: 142 NGLNQMIVVELGTNP--------------LKSSGIENGAFQG---------MKKLSYIRI 178

Query: 200 SKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNF----EG 255
           +       IP   G    L+ L L  N  +  +  + + G  +L  L LS N+      G
Sbjct: 179 ADTNIT-TIP--QGLPPSLTELHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSISAVDNG 234

Query: 256 QFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLS-----GHIPHWMG 310
                  N   LR L+  NN    K+  GL     +QV+ + NN +S        P    
Sbjct: 235 SL----ANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYN 289

Query: 311 NFSSELEILSMSKNHLEGNV--PVQLNNLERLRILDISENR 349
              +    +S+  N ++     P     +     + +   +
Sbjct: 290 TKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 83.9 bits (208), Expect = 1e-17
 Identities = 48/244 (19%), Positives = 93/244 (38%), Gaps = 23/244 (9%)

Query: 216 KELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNF---EGQFFSEYMNLTRLRHLYF 272
            + +LLDL  N  +  +         +L  L L NN         F+    L +L  LY 
Sbjct: 52  PDTALLDLQNNKITE-IKDGDFKNLKNLHTLILINNKISKISPGAFA---PLVKLERLYL 107

Query: 273 ENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFS--SELEILSMSKNHL-EGN 329
             N    ++ + +  +  LQ L +  N ++  +      F+  +++ ++ +  N L    
Sbjct: 108 SKNQLK-ELPEKMPKT--LQELRVHENEIT-KVRK--SVFNGLNQMIVVELGTNPLKSSG 161

Query: 330 VPVQ-LNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSC-KL 387
           +       +++L  + I++  ++  I   L   S+  L L  N +   +     +    L
Sbjct: 162 IENGAFQGMKKLSYIRIADTNITT-IPQGL-PPSLTELHLDGNKITK-VDAASLKGLNNL 218

Query: 388 VTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSG 447
             L L  N+ S      +    +LR L L  N L   +P  L   + + ++ L  N  S 
Sbjct: 219 AKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK-VPGGLADHKYIQVVYLHNNNIS- 276

Query: 448 SIPP 451
           +I  
Sbjct: 277 AIGS 280

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 83.9 bits (208), Expect = 1e-17
 Identities = 51/218 (23%), Positives = 84/218 (38%), Gaps = 13/218 (5%)

Query: 242 SLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSS-TSLQVLDISNNM 300
              LLDL NN        ++ NL  L  L   NN  S KI  G  +    L+ L +S N 
Sbjct: 53  DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLYLSKNQ 111

Query: 301 LSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRL-SGPIASSL- 358
           L   +P       + L+ L + +N +        N L ++ ++++  N L S  I +   
Sbjct: 112 LK-ELP--EKMPKT-LQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAF 167

Query: 359 -NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLG 417
             +  + ++ +    +   IP  L  S  L  L+L  N  +      +   +NL  L L 
Sbjct: 168 QGMKKLSYIRIADTNITT-IPQGLPPS--LTELHLDGNKITKVDAASLKGLNNLAKLGLS 224

Query: 418 GNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFAN 455
            N +       L     L  + L+ NK    +P   A+
Sbjct: 225 FNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLAD 261

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 73.5 bits (181), Expect = 3e-14
 Identities = 59/348 (16%), Positives = 123/348 (35%), Gaps = 76/348 (21%)

Query: 290 SLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENR 349
            L+V+  S+  L   +P    +   +  +L +  N +         NL+ L  L +  N+
Sbjct: 32  HLRVVQCSDLGLE-KVP---KDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNK 87

Query: 350 LSGPIASSL-NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQI-NE 407
           +S     +   L  +E L L KN L   +P ++ ++  L  L + +N  + ++   + N 
Sbjct: 88  ISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMPKT--LQELRVHENEIT-KVRKSVFNG 143

Query: 408 HSNLRFLLLGGNHLQ-GPIPDQLCQ-LQKLAMMDLSRNKFSGSIPP-CFANVLSWRVG-- 462
            + +  + LG N L+   I +   Q ++KL+ + ++    + +IP     ++    +   
Sbjct: 144 LNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLPPSLTELHLDGN 202

Query: 463 -----SDDVLNG-SKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVE 516
                    L G + L   +L        L  N  S    G       L +         
Sbjct: 203 KITKVDAASLKGLNNLA--KLG-------LSFNSISAVDNGSLANTPHLRE--------- 244

Query: 517 IEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPE 576
                                 L L+ N+L  ++P  +   + I  + L NN++S +I  
Sbjct: 245 ----------------------LHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS-AIGS 280

Query: 577 S-------FSNLKMIESLDISYNKLT-GQIPP----QLTALNFLSIFN 612
           +        +       + +  N +   +I P     +     + + N
Sbjct: 281 NDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGN 328

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 73.1 bits (180), Expect = 4e-14
 Identities = 43/286 (15%), Positives = 80/286 (27%), Gaps = 50/286 (17%)

Query: 2   NLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFP 61
            L  N I          L +L+ L +S NQL   LP  +    +L+ L +  N       
Sbjct: 82  ILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKM--PKTLQELRVHENEIT-KVR 137

Query: 62  LSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLK 121
            S     +++  + L    N L     + +                            L 
Sbjct: 138 KSVFNGLNQMIVVELG--TNPL---KSSGIE------------------NGAFQGMKKLS 174

Query: 122 YLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDF-----LHHLDISC 176
           Y+ ++   +    P  L  +   L  L L  N  + +               L  L +S 
Sbjct: 175 YIRIADTNIT-TIPQGLPPS---LTELHLDGNKITKV-----DAASLKGLNNLAKLGLSF 225

Query: 177 NNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFS-----GG 231
           N+    + +        L  + ++ N     +P    + K + ++ L  N  S       
Sbjct: 226 NSIS-AVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDF 283

Query: 232 LSQSVVTGCFSLELLDLSNNNFEGQFFSEYM--NLTRLRHLYFENN 275
                 T   S   + L +N  +           +     +   N 
Sbjct: 284 CPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 48.8 bits (117), Expect = 3e-06
 Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 3/82 (3%)

Query: 539 LDLSCNQLTGEIPSDI-GQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQ 597
           L L  N++T ++ +     L  +  L LS NS+S     S +N   +  L ++ NKL  +
Sbjct: 197 LHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-K 254

Query: 598 IPPQLTALNFLSIFNVSYNNLS 619
           +P  L    ++ +  +  NN+S
Sbjct: 255 VPGGLADHKYIQVVYLHNNNIS 276

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 46.9 bits (112), Expect = 1e-05
 Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 5/85 (5%)

Query: 536 VTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLT 595
              LDL  N++T     D   L+ +  L L NN +S   P +F+ L  +E L +S N+L 
Sbjct: 54  TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 113

Query: 596 GQIPPQL-TALNFLSIFNVSYNNLS 619
            ++P ++   L  L +     N ++
Sbjct: 114 -ELPEKMPKTLQELRV---HENEIT 134

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 18/91 (19%), Positives = 38/91 (41%), Gaps = 5/91 (5%)

Query: 531 SNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDIS 590
           + + ++  L LS NQL  E+P      + +  L +  N ++      F+ L  +  +++ 
Sbjct: 97  APLVKLERLYLSKNQLK-ELPE--KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELG 153

Query: 591 YNKLT-GQIPPQ-LTALNFLSIFNVSYNNLS 619
            N L    I       +  LS   ++  N++
Sbjct: 154 TNPLKSSGIENGAFQGMKKLSYIRIADTNIT 184

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 41.5 bits (98), Expect = 6e-04
 Identities = 21/101 (20%), Positives = 39/101 (38%), Gaps = 7/101 (6%)

Query: 531 SNVNRVTGLDLSCNQLTGEIPSDIGQ-LQAILALNLSNNSLSGSIPESFSNLKMIESLDI 589
            N+  +  L L  N+++ +I       L  +  L LS N L     +    L   + L +
Sbjct: 73  KNLKNLHTLILINNKIS-KISPGAFAPLVKLERLYLSKNQLKELPEKMPKTL---QELRV 128

Query: 590 SYNKLTGQIPPQ-LTALNFLSIFNVSYNNLSGRTPDKGQFA 629
             N++T ++       LN + +  +  N L     + G F 
Sbjct: 129 HENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ 168

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 85.7 bits (212), Expect = 2e-18
 Identities = 50/254 (19%), Positives = 88/254 (34%), Gaps = 20/254 (7%)

Query: 114 LLHQYHLKYLDLSHNKLVGNFPTWLLR--NNPKLEVLLLKNNSFSGILQLPKAKHDF--- 168
           ++    LK L +   ++        LR      L+ L L+N   +G    P  +      
Sbjct: 64  IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDL 123

Query: 169 --LHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRN 226
             L+  ++S       L      +   L  + I++                LS LDLS N
Sbjct: 124 NILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDN 183

Query: 227 YFSG--GLSQSVVTGCF-SLELLDLSNNNFE---GQFFSEYMNLTRLRHLYFENNNFSGK 280
              G  GL  ++    F +L++L L N   E   G   +      +L+ L   +N+    
Sbjct: 184 PELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDA 243

Query: 281 IKDGLLS-STSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLER 339
                    + L  L++S   L   +P       ++L +L +S N L+ N       L +
Sbjct: 244 AGAPSCDWPSQLNSLNLSFTGLK-QVP---KGLPAKLSVLDLSYNRLDRNPSPD--ELPQ 297

Query: 340 LRILDISENRLSGP 353
           +  L +  N     
Sbjct: 298 VGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 85.3 bits (211), Expect = 3e-18
 Identities = 42/249 (16%), Positives = 82/249 (32%), Gaps = 20/249 (8%)

Query: 216 KELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFS---EYMNLTRLRHLYF 272
           + L  L    +  +     + +    SL+ L +       +        + ++ L+ L  
Sbjct: 43  RSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTL 102

Query: 273 ENNNFSGKI--KDGLLSSTSLQVLDISNNMLSG---HIPHWMGNFSSELEILSMSKNHLE 327
           EN   +G         +   L +L++ N   +     +          L++LS+++ H  
Sbjct: 103 ENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSL 162

Query: 328 GNVPVQLNNLERLRILDISENRLSGPI-----ASSLNLSSVEHLSLQKNALNGL---IPG 379
                Q+     L  LD+S+N   G          L   +++ L+L+   +         
Sbjct: 163 NFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSA 222

Query: 380 ELFRSCKLVTLNLRDNTFSGRIPHQINEH-SNLRFLLLGGNHLQGPIPDQLCQLQKLAMM 438
                 +L  L+L  N+          +  S L  L L    L+        +L  L   
Sbjct: 223 LAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKLSVL--- 279

Query: 439 DLSRNKFSG 447
           DLS N+   
Sbjct: 280 DLSYNRLDR 288

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 79.9 bits (197), Expect = 2e-16
 Identities = 45/220 (20%), Positives = 76/220 (34%), Gaps = 18/220 (8%)

Query: 218 LSLLDLSRNYFSGGLSQSVVTGCF-SLELLDLSNNNFEG--QFFSEYMNL--TRLRHLYF 272
           L  L L     +G     ++      L +L+L N ++     + +E        L+ L  
Sbjct: 97  LQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSI 156

Query: 273 ENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHW---MGNFSSELEILSMSKNHLE-- 327
              +      + +    +L  LD+S+N   G               L++L++    +E  
Sbjct: 157 AQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETP 216

Query: 328 -GNVPVQLNNLERLRILDISENRLSGPIASS--LNLSSVEHLSLQKNALNGLIPGELFRS 384
            G          +L+ LD+S N L     +      S +  L+L    L  + P  L   
Sbjct: 217 SGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQV-PKGLPA- 274

Query: 385 CKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGP 424
            KL  L+L  N    R P   +E   +  L L GN     
Sbjct: 275 -KLSVLDLSYNRLD-RNP-SPDELPQVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 79.2 bits (195), Expect = 4e-16
 Identities = 46/286 (16%), Positives = 87/286 (30%), Gaps = 60/286 (20%)

Query: 2   NLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLT--SLEYLDLSHNNFEGM 59
                         +  ++ L+ L + + ++ G+ P  +   T   L  L+L + ++   
Sbjct: 77  AARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR 136

Query: 60  FPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYH 119
               +                     + + WL    L VL + + +      + +     
Sbjct: 137 DAWLA---------------------ELQQWLKPG-LKVLSIAQAHSLNFSCEQVRVFPA 174

Query: 120 LKYLDLSHNKLVGNFP---TWLLRNNPKLEVLLLKNNSFSGILQLPK---AKHDFLHHLD 173
           L  LDLS N  +G             P L+VL L+N        +     A    L  LD
Sbjct: 175 LSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLD 234

Query: 174 ISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLS 233
           +S N+ R            +L  +++S                   L  + +   +    
Sbjct: 235 LSHNSLRDAAGAPSCDWPSQLNSLNLSFT----------------GLKQVPKGLPA---- 274

Query: 234 QSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSG 279
                    L +LDLS N  +         L ++ +L  + N F  
Sbjct: 275 --------KLSVLDLSYNRLDR--NPSPDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 78.0 bits (192), Expect = 9e-16
 Identities = 52/287 (18%), Positives = 78/287 (27%), Gaps = 18/287 (6%)

Query: 30  NQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLS--TRNNTLHVKT 87
           N L  +   +     SLEYL    +    +   + +     L+ L +      + +    
Sbjct: 29  NCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGA 88

Query: 88  ENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYH--LKYLDLSHNKLVGNF---PTWLLRNN 142
              L  S L  L L    + G+ P  LL      L  L+L +                  
Sbjct: 89  LRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLK 148

Query: 143 PKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVI------LQKLMY 196
           P L+VL +                  L  LD+S N   G+      +       LQ L  
Sbjct: 149 PGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLAL 208

Query: 197 MDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQ 256
            +       G     A    +L  LDLS N                L  L+LS    +  
Sbjct: 209 RNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQV 268

Query: 257 FFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSG 303
                    +L  L    N          L    +  L +  N    
Sbjct: 269 PKG---LPAKLSVLDLSYNRLDRNPSPDEL--PQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 74.5 bits (183), Expect = 1e-14
 Identities = 58/325 (17%), Positives = 95/325 (29%), Gaps = 62/325 (19%)

Query: 307 HWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASS----LNLSS 362
              G   S   +L       +      +     L+ L +   R+   I       L +S 
Sbjct: 37  ELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISG 96

Query: 363 VEHLSLQKNALNGLIPGELFRSC--KLVTLNLRDNTFSGRIPH----QINEHSNLRFLLL 416
           ++ L+L+   + G  P  L  +    L  LNLR+ +++ R       Q      L+ L +
Sbjct: 97  LQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSI 156

Query: 417 GGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPE 476
              H      +Q+     L+ +DLS N   G      A                    P 
Sbjct: 157 AQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLK--------------FPT 202

Query: 477 LDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRV 536
           L + +   + G    S     +      L+                              
Sbjct: 203 L-QVLALRNAGMETPSGVCSALAAARVQLQG----------------------------- 232

Query: 537 TGLDLSCNQLTGEIPSDIGQ-LQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLT 595
             LDLS N L     +        + +LNLS   L        + L     LD+SYN+L 
Sbjct: 233 --LDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKL---SVLDLSYNRLD 287

Query: 596 GQIPPQLTALNFLSIFNVSYNNLSG 620
               P    L  +   ++  N    
Sbjct: 288 R--NPSPDELPQVGNLSLKGNPFLD 310

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 85.9 bits (213), Expect = 7e-18
 Identities = 72/397 (18%), Positives = 142/397 (35%), Gaps = 48/397 (12%)

Query: 2   NLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFP 61
           +   + I    +T ++ LT L  L  +SN +  +L   +S  T+L YL    N       
Sbjct: 48  DCHNSSITD--MTGIEKLTGLTKLICTSNNIT-TLD--LSQNTNLTYLACDSNKLTN-LD 101

Query: 62  LSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLK 121
           ++ L   +KL  L      N L       L  SQ  +L    C  N      + H   L 
Sbjct: 102 VTPL---TKLTYLNCD--TNKLTK-----LDVSQNPLLTYLNCARNTLTEIDVSHNTQLT 151

Query: 122 YLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRG 181
            LD   NK +       +    +L  L    N  +   +L  +++  L+ L+   NN   
Sbjct: 152 ELDCHLNKKITKLD---VTPQTQLTTLDCSFNKIT---ELDVSQNKLLNRLNCDTNNIT- 204

Query: 182 KLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCF 241
           KL  N      +L ++D S N     I  +   + +L+  D S N     L++  V+   
Sbjct: 205 KLDLNQ---NIQLTFLDCSSNKLT-EIDVT--PLTQLTYFDCSVNP----LTELDVSTLS 254

Query: 242 SLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNML 301
            L  L     +      +   + T+L +   E      ++   +  +T L +LD     +
Sbjct: 255 KLTTLHCIQTDLLEIDLT---HNTQLIYFQAEGCRKIKEL--DVTHNTQLYLLDCQAAGI 309

Query: 302 SGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLS 361
           +  +   +      L  L ++   L     + +++  +L+ L      +    +S   + 
Sbjct: 310 T-ELD--LSQNPK-LVYLYLNNTELTE---LDVSHNTKLKSLSCVNAHIQD-FSSVGKIP 361

Query: 362 SVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFS 398
           ++ +    +     +    L  +   +T+ +  +   
Sbjct: 362 ALNNNFEAEGQTITMPKETL--TNNSLTIAVSPDLLD 396

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 82.4 bits (204), Expect = 1e-16
 Identities = 74/420 (17%), Positives = 128/420 (30%), Gaps = 71/420 (16%)

Query: 16  LKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLL 75
            + L  L  LD  ++ +   +   I  LT L  L  + NN      LS   N   L  L 
Sbjct: 38  EEQLATLTSLDCHNSSIT-DMTG-IEKLTGLTKLICTSNNITT-LDLSQNTN---LTYLA 91

Query: 76  LSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFP 135
               +N L       L  + L  L    C+ N      +     L YL+ + N L     
Sbjct: 92  CD--SNKLTN-----LDVTPLTKLTYLNCDTNKLTKLDVSQNPLLTYLNCARNTLT---- 140

Query: 136 TWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLM 195
              + +N +L  L    N     L +       L  LD S N               K+ 
Sbjct: 141 EIDVSHNTQLTELDCHLNKKITKLDVTPQTQ--LTTLDCSFN---------------KIT 183

Query: 196 YMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEG 255
            +D+S+N             K L+ L+   N     +++  +     L  LD S+N    
Sbjct: 184 ELDVSQN-------------KLLNRLNCDTNN----ITKLDLNQNIQLTFLDCSSNKLTE 226

Query: 256 QFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSE 315
              +    LT+L +     N  + ++    L  + L  L      L   I       +  
Sbjct: 227 IDVT---PLTQLTYFDCSVNPLT-ELDVSTL--SKLTTLHCIQTDLL-EID-----LTHN 274

Query: 316 LEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNG 375
            +++            + + +  +L +LD     ++    S      + +L L    L  
Sbjct: 275 TQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLS--QNPKLVYLYLNNTELTE 332

Query: 376 LIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKL 435
           L         KL +L+  +          + +   L             +P +      L
Sbjct: 333 LDVSHNT---KLKSLSCVNAHIQD-FS-SVGKIPALNNNFEAEGQTIT-MPKETLTNNSL 386

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 78.2 bits (193), Expect = 2e-15
 Identities = 62/429 (14%), Positives = 131/429 (30%), Gaps = 74/429 (17%)

Query: 191 LQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSN 250
               +               S  ++  L+ LD   +  +     + +     L  L  ++
Sbjct: 20  FASEVAAAFEMQ---ATDTISEEQLATLTSLDCHNSSIT---DMTGIEKLTGLTKLICTS 73

Query: 251 NNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMG 310
           NN      S     T L +L  ++N  +      L   T L  L+   N L+        
Sbjct: 74  NNITTLDLS---QNTNLTYLACDSNKLTNLDVTPL---TKLTYLNCDTNKLTKLDVSQNP 127

Query: 311 NFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQK 370
                L  L+ ++N L     + +++  +L  LD   N+    +  +   + +  L    
Sbjct: 128 L----LTYLNCARNTLT---EIDVSHNTQLTELDCHLNKKITKLDVT-PQTQLTTLDCSF 179

Query: 371 NALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLC 430
           N +  L   +      L  LN   N  + ++   +N++  L FL    N L   I   + 
Sbjct: 180 NKITELDVSQN---KLLNRLNCDTNNIT-KLD--LNQNIQLTFLDCSSNKLTE-ID--VT 230

Query: 431 QLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNR 490
            L +L   D S N  +       + + +         +  +++     + I F + G  +
Sbjct: 231 PLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQ---TDLLEIDLTHNTQLIYFQAEGCRK 287

Query: 491 SSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEI 550
                                                   ++  ++  LD     +T   
Sbjct: 288 IKELDV----------------------------------THNTQLYLLDCQAAGIT--- 310

Query: 551 PSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSI 610
             D+ Q   ++ L L+N  L+  +    S+   ++SL      +       +  +  L+ 
Sbjct: 311 ELDLSQNPKLVYLYLNNTELT-ELD--VSHNTKLKSLSCVNAHIQDF--SSVGKIPALNN 365

Query: 611 FNVSYNNLS 619
              +     
Sbjct: 366 NFEAEGQTI 374

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 74.3 bits (183), Expect = 4e-14
 Identities = 61/361 (16%), Positives = 116/361 (32%), Gaps = 43/361 (11%)

Query: 88  ENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEV 147
            +W P             +  +          L  LD  ++ +  +     +     L  
Sbjct: 12  NDWFPDDNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSIT-DMTG--IEKLTGLTK 68

Query: 148 LLLKNNSFSGI--LQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFE 205
           L+  +N+ + +   Q        L +L    N     L       L KL Y++   N   
Sbjct: 69  LICTSNNITTLDLSQNTN-----LTYLACDSNKLT-NLDVT---PLTKLTYLNCDTNKLT 119

Query: 206 GNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLT 265
             +  S  +   L+ L+ +RN     L++  V+    L  LD   N        +    T
Sbjct: 120 -KLDVS--QNPLLTYLNCARN----TLTEIDVSHNTQLTELDCHLNKKIT--KLDVTPQT 170

Query: 266 RLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNH 325
           +L  L    N  +   +  +  +  L  L+   N ++  +   +      L  L  S N 
Sbjct: 171 QLTTLDCSFNKIT---ELDVSQNKLLNRLNCDTNNIT-KLD--LNQNIQ-LTFLDCSSNK 223

Query: 326 LEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSC 385
           L     + +  L +L   D S N L+    S   LS +  L   +  L  +   +L  + 
Sbjct: 224 LTE---IDVTPLTQLTYFDCSVNPLTELDVS--TLSKLTTLHCIQTDLLEI---DLTHNT 275

Query: 386 KLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKF 445
           +L+            +   +  ++ L  L      +       L Q  KL  + L+  + 
Sbjct: 276 QLIYFQAEGCRKIKELD--VTHNTQLYLLDCQAAGIT---ELDLSQNPKLVYLYLNNTEL 330

Query: 446 S 446
           +
Sbjct: 331 T 331

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 65.1 bits (159), Expect = 3e-11
 Identities = 62/341 (18%), Positives = 102/341 (29%), Gaps = 86/341 (25%)

Query: 16  LKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLL 75
           + + T+L  LD   N+    L   ++  T L  LD S N    +     ++ +  L  L 
Sbjct: 144 VSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKITEL----DVSQNKLLNRLN 197

Query: 76  LSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFP 135
                N              +  L L +                L +LD S NKL     
Sbjct: 198 CD--TN-------------NITKLDLNQNI-------------QLTFLDCSSNKLT-EID 228

Query: 136 TWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLM 195
              +    +L       N  +   +L  +    L  L     +               L+
Sbjct: 229 ---VTPLTQLTYFDCSVNPLT---ELDVSTLSKLTTLHCIQTD---------------LL 267

Query: 196 YMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEG 255
            +D++ N              +L             + +  VT    L LLD        
Sbjct: 268 EIDLTHN-------------TQLIYFQAEGCRK---IKELDVTHNTQLYLLDCQAAGITE 311

Query: 256 QFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLS-----GHIPHWMG 310
              S      +L +LY  N   + ++       T L+ L   N  +      G IP    
Sbjct: 312 LDLS---QNPKLVYLYLNNTELT-ELDVSHN--TKLKSLSCVNAHIQDFSSVGKIPALNN 365

Query: 311 NFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLS 351
           NF +E + ++M K  L  N    L       +LD   N ++
Sbjct: 366 NFEAEGQTITMPKETLTNN---SLTIAVSPDLLDQFGNPMN 403

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 86.0 bits (213), Expect = 8e-18
 Identities = 49/232 (21%), Positives = 82/232 (35%), Gaps = 12/232 (5%)

Query: 217 ELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNN---FEGQFFSEYMNLTRLRHLYFE 273
               L+L  N     +          LE+L L  N+    E   F+    L  L  L   
Sbjct: 76  NTRYLNLMENNIQM-IQADTFRHLHHLEVLQLGRNSIRQIEVGAFN---GLASLNTLELF 131

Query: 274 NNNFSGKIKDGLLSS-TSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSK-NHLEGNVP 331
           +N  +  I  G     + L+ L + NN +   IP +  N    L  L + +   LE    
Sbjct: 132 DNWLT-VIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISE 189

Query: 332 VQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLN 391
                L  L+ L++    +   + +   L  +E L +  N    + PG       L  L 
Sbjct: 190 GAFEGLFNLKYLNLGMCNIKD-MPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLW 248

Query: 392 LRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRN 443
           + ++  S    +  +  ++L  L L  N+L     D    L+ L  + L  N
Sbjct: 249 VMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 84.0 bits (208), Expect = 3e-17
 Identities = 57/284 (20%), Positives = 92/284 (32%), Gaps = 45/284 (15%)

Query: 119 HLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNN 178
               +  +   L    P  +         L L  N+   I          L  L +  N+
Sbjct: 55  QFSKVVCTRRGLS-EVPQGI---PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS 110

Query: 179 FRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVT 238
            R                  I    F G        +  L+ L+L  N+ +  +      
Sbjct: 111 IR-----------------QIEVGAFNG--------LASLNTLELFDNWLTV-IPSGAFE 144

Query: 239 GCFSLELLDLSNNNF----EGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSS-TSLQV 293
               L  L L NN         F      +  L  L          I +G      +L+ 
Sbjct: 145 YLSKLRELWLRNNPIESIPSYAF----NRVPSLMRLDLGELKKLEYISEGAFEGLFNLKY 200

Query: 294 LDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSG- 352
           L++    +   +P+        LE L MS NH     P   + L  L+ L +  +++S  
Sbjct: 201 LNLGMCNIK-DMPNLTPL--VGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLI 257

Query: 353 PIASSLNLSSVEHLSLQKNALNGLIPGELFRSCK-LVTLNLRDN 395
              +   L+S+  L+L  N L+ L P +LF   + LV L+L  N
Sbjct: 258 ERNAFDGLASLVELNLAHNNLSSL-PHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 83.6 bits (207), Expect = 4e-17
 Identities = 55/258 (21%), Positives = 87/258 (33%), Gaps = 42/258 (16%)

Query: 2   NLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFP 61
           NL  N I        ++L  L++L +  N +        + L SL  L+L  N    + P
Sbjct: 81  NLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLT-VIP 139

Query: 62  LSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQ-YHL 120
             +    SKL  L L   N    + +  +     L+ L L +        +      ++L
Sbjct: 140 SGAFEYLSKLRELWLR-NNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNL 198

Query: 121 KYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDF-----LHHLDIS 175
           KYL+L    +  + P   L     LE L +  N F  I         F     L  L + 
Sbjct: 199 KYLNLGMCNIK-DMPN--LTPLVGLEELEMSGNHFPEI-----RPGSFHGLSSLKKLWVM 250

Query: 176 CNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQS 235
            +                     I +N F+G        +  L  L+L+ N  S  L   
Sbjct: 251 NSQVS-----------------LIERNAFDG--------LASLVELNLAHNNLS-SLPHD 284

Query: 236 VVTGCFSLELLDLSNNNF 253
           + T    L  L L +N +
Sbjct: 285 LFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 82.9 bits (205), Expect = 6e-17
 Identities = 53/290 (18%), Positives = 87/290 (30%), Gaps = 70/290 (24%)

Query: 20  TRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTR 79
           +  + L++  N +         +L  LE L L  N+      +  +   +   GL     
Sbjct: 75  SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS------IRQIEVGA-FNGL----- 122

Query: 80  NNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLL 139
                                                   L  L+L  N L    P+   
Sbjct: 123 --------------------------------------ASLNTLELFDNWLT-VIPSGAF 143

Query: 140 RNNPKLEVLLLKNNSFSGI-----LQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKL 194
               KL  L L+NN    I      ++P      L  LD+        +       L  L
Sbjct: 144 EYLSKLRELWLRNNPIESIPSYAFNRVPS-----LMRLDLGELKKLEYISEGAFEGLFNL 198

Query: 195 MYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNN-- 252
            Y+++     + ++P     +  L  L++S N+F   +      G  SL+ L + N+   
Sbjct: 199 KYLNLGMCNIK-DMPNLTP-LVGLEELEMSGNHFP-EIRPGSFHGLSSLKKLWVMNSQVS 255

Query: 253 -FEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNML 301
             E   F     L  L  L   +NN S    D       L  L + +N  
Sbjct: 256 LIERNAFD---GLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 77.1 bits (190), Expect = 5e-15
 Identities = 47/216 (21%), Positives = 75/216 (34%), Gaps = 38/216 (17%)

Query: 242 SLELLDLSNNNF----EGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSS-TSLQVLDI 296
           +   L+L  NN        F     +L  L  L    N+   +I+ G  +   SL  L++
Sbjct: 76  NTRYLNLMENNIQMIQADTF----RHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLEL 130

Query: 297 SNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISE-NRLSGPIA 355
            +N L+  IP     + S+L  L +  N +E       N +  L  LD+ E  +L     
Sbjct: 131 FDNWLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLE---- 185

Query: 356 SSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLL 415
                       + + A  GL          L  LNL        +P+ +     L  L 
Sbjct: 186 -----------YISEGAFEGLF--------NLKYLNLGMCNIK-DMPN-LTPLVGLEELE 224

Query: 416 LGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPP 451
           + GNH     P     L  L  + +  ++ S  I  
Sbjct: 225 MSGNHFPEIRPGSFHGLSSLKKLWVMNSQVS-LIER 259

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 70.5 bits (173), Expect = 6e-13
 Identities = 58/309 (18%), Positives = 106/309 (34%), Gaps = 65/309 (21%)

Query: 288 STSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISE 347
           S     +  +   LS  +P       S    L++ +N+++        +L  L +L +  
Sbjct: 53  SNQFSKVVCTRRGLS-EVPQ---GIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGR 108

Query: 348 NRLSG-PIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQIN 406
           N +    + +   L+S+  L L  N L  +  G      KL  L LR+N     IP    
Sbjct: 109 NSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAF 167

Query: 407 EH-SNLRFLLLGG-NHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSD 464
               +L  L LG    L+         L  L  ++L        +P     ++       
Sbjct: 168 NRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMPN-LTPLVGLE---- 221

Query: 465 DVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNR 524
                      EL+       +  N       G +  LS+L+K                 
Sbjct: 222 -----------ELE-------MSGNHFPEIRPGSFHGLSSLKK----------------- 246

Query: 525 YEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPES-FSNLKM 583
                         L +  +Q++    +    L +++ LNL++N+LS S+P   F+ L+ 
Sbjct: 247 --------------LWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRY 291

Query: 584 IESLDISYN 592
           +  L + +N
Sbjct: 292 LVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 63.2 bits (154), Expect = 1e-10
 Identities = 52/271 (19%), Positives = 90/271 (33%), Gaps = 47/271 (17%)

Query: 356 SSLNLSSV--------EHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINE 407
           +   LS V         +L+L +N +  +          L  L L  N+   +I      
Sbjct: 62  TRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFN 120

Query: 408 H-SNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPP-CFANVLSWRVGSDD 465
             ++L  L L  N L          L KL  + L  N    SIP   F  V         
Sbjct: 121 GLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRV--------- 170

Query: 466 VLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRY 525
                 L   +L E          +      G +  L  L+          +   M N  
Sbjct: 171 ----PSLMRLDLGE--------LKKLEYISEGAFEGLFNLK---------YLNLGMCNIK 209

Query: 526 EIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIE 585
           ++ N + +  +  L++S N      P     L ++  L + N+ +S     +F  L  + 
Sbjct: 210 DMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLV 269

Query: 586 SLDISYNKLTGQIPP----QLTALNFLSIFN 612
            L++++N L+  +P      L  L  L + +
Sbjct: 270 ELNLAHNNLS-SLPHDLFTPLRYLVELHLHH 299

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 47.0 bits (112), Expect = 1e-05
 Identities = 19/86 (22%), Positives = 32/86 (37%), Gaps = 2/86 (2%)

Query: 535 RVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKL 594
               L+L  N +          L  +  L L  NS+      +F+ L  + +L++  N L
Sbjct: 76  NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWL 135

Query: 595 TGQIPPQ-LTALNFLSIFNVSYNNLS 619
           T  IP      L+ L    +  N + 
Sbjct: 136 T-VIPSGAFEYLSKLRELWLRNNPIE 160

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 46.7 bits (111), Expect = 2e-05
 Identities = 45/237 (18%), Positives = 78/237 (32%), Gaps = 63/237 (26%)

Query: 386 KLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKF 445
           +   +       S  +P  I   SN R+L L  N++Q    D    L  L ++ L RN  
Sbjct: 55  QFSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSI 111

Query: 446 SGSIPP-CFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSA 504
              I    F  +             + LN   L+       L +N            L+ 
Sbjct: 112 R-QIEVGAFNGL-------------ASLN--TLE-------LFDNW-----------LTV 137

Query: 505 LEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDI-GQLQAILAL 563
           +   A         F             ++++  L L  N +   IPS    ++ +++ L
Sbjct: 138 IPSGA---------F-----------EYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRL 176

Query: 564 NLSN-NSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLS 619
           +L     L      +F  L  ++ L++    +     P LT L  L    +S N+  
Sbjct: 177 DLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD--MPNLTPLVGLEELEMSGNHFP 231

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 84.4 bits (209), Expect = 2e-17
 Identities = 54/253 (21%), Positives = 89/253 (35%), Gaps = 32/253 (12%)

Query: 2   NLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFP 61
           NL  N I    +   K+L  L+IL +S N +        + L +L  L+L  N      P
Sbjct: 70  NLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT-TIP 128

Query: 62  LSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQ-YHL 120
             +    SKL+ L L   N    + +  +     L  L L +        +       +L
Sbjct: 129 NGAFVYLSKLKELWLR-NNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNL 187

Query: 121 KYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFR 180
           +YL+L+   L    P   L    KL+ L L  N  S I          L  L +  +  +
Sbjct: 188 RYLNLAMCNLR-EIPN--LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ 244

Query: 181 GKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGC 240
                             I +N F+         ++ L  ++L+ N  +  L   + T  
Sbjct: 245 -----------------VIERNAFDN--------LQSLVEINLAHNNLT-LLPHDLFTPL 278

Query: 241 FSLELLDLSNNNF 253
             LE + L +N +
Sbjct: 279 HHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 83.6 bits (207), Expect = 4e-17
 Identities = 52/235 (22%), Positives = 85/235 (36%), Gaps = 18/235 (7%)

Query: 217 ELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNN---FEGQFFSEYMNLTRLRHLYFE 273
              LL+L  N     +  +       LE+L LS N+    E   F+    L  L  L   
Sbjct: 65  NTRLLNLHENQIQI-IKVNSFKHLRHLEILQLSRNHIRTIEIGAFN---GLANLNTLELF 120

Query: 274 NNNFSGKIKDGLLSS-TSLQVLDISNNMLSGHIPHWMGNFS--SELEILSMSK-NHLEGN 329
           +N  +  I +G     + L+ L + NN +   IP     F+    L  L + +   L   
Sbjct: 121 DNRLT-TIPNGAFVYLSKLKELWLRNNPIE-SIP--SYAFNRIPSLRRLDLGELKRLS-Y 175

Query: 330 VPVQ-LNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLV 388
           +       L  LR L+++   L   I +   L  ++ L L  N L+ + PG       L 
Sbjct: 176 ISEGAFEGLSNLRYLNLAMCNLRE-IPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQ 234

Query: 389 TLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRN 443
            L +  +       +  +   +L  + L  N+L     D    L  L  + L  N
Sbjct: 235 KLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 82.5 bits (204), Expect = 8e-17
 Identities = 57/284 (20%), Positives = 94/284 (33%), Gaps = 45/284 (15%)

Query: 119 HLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNN 178
               +      L    P  +   +    +L L  N    I          L  L +S N+
Sbjct: 44  QFSKVICVRKNLR-EVPDGI---STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH 99

Query: 179 FRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVT 238
            R                  I    F G        +  L+ L+L  N  +  +      
Sbjct: 100 IR-----------------TIEIGAFNG--------LANLNTLELFDNRLTT-IPNGAFV 133

Query: 239 GCFSLELLDLSNNNF----EGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSS-TSLQV 293
               L+ L L NN         F      +  LR L          I +G     ++L+ 
Sbjct: 134 YLSKLKELWLRNNPIESIPSYAF----NRIPSLRRLDLGELKRLSYISEGAFEGLSNLRY 189

Query: 294 LDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSG- 352
           L+++   L   IP+       +L+ L +S NHL    P     L  L+ L + ++++   
Sbjct: 190 LNLAMCNLR-EIPNLTPL--IKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVI 246

Query: 353 PIASSLNLSSVEHLSLQKNALNGLIPGELFRSCK-LVTLNLRDN 395
              +  NL S+  ++L  N L  L P +LF     L  ++L  N
Sbjct: 247 ERNAFDNLQSLVEINLAHNNLTLL-PHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 82.1 bits (203), Expect = 1e-16
 Identities = 55/291 (18%), Positives = 96/291 (32%), Gaps = 72/291 (24%)

Query: 20  TRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTR 79
           T  ++L++  NQ+     +   +L  LE L LS N+      + ++   +   GL     
Sbjct: 64  TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH------IRTIEIGA-FNGL----- 111

Query: 80  NNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLL 139
                                                  +L  L+L  N+L    P    
Sbjct: 112 --------------------------------------ANLNTLELFDNRLT-TIPNGAF 132

Query: 140 RNNPKLEVLLLKNNSFSGI-----LQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKL 194
               KL+ L L+NN    I      ++P      L  LD+        +       L  L
Sbjct: 133 VYLSKLKELWLRNNPIESIPSYAFNRIPS-----LRRLDLGELKRLSYISEGAFEGLSNL 187

Query: 195 MYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNN-- 252
            Y++++       IP     + +L  LDLS N+ S  +      G   L+ L +  +   
Sbjct: 188 RYLNLAMCNLR-EIPNLTP-LIKLDELDLSGNHLS-AIRPGSFQGLMHLQKLWMIQSQIQ 244

Query: 253 -FEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSS-TSLQVLDISNNML 301
             E   F    NL  L  +   +NN +  +   L +    L+ + + +N  
Sbjct: 245 VIERNAFD---NLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 77.9 bits (192), Expect = 3e-15
 Identities = 51/216 (23%), Positives = 79/216 (36%), Gaps = 38/216 (17%)

Query: 242 SLELLDLSNNNF----EGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSS-TSLQVLDI 296
           +  LL+L  N         F     +L  L  L    N+    I+ G  +   +L  L++
Sbjct: 65  NTRLLNLHENQIQIIKVNSF----KHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLEL 119

Query: 297 SNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISE-NRLSGPIA 355
            +N L+  IP+    + S+L+ L +  N +E       N +  LR LD+ E  RLS    
Sbjct: 120 FDNRLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLS---- 174

Query: 356 SSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLL 415
                       + + A  GL          L  LNL        IP+ +     L  L 
Sbjct: 175 -----------YISEGAFEGLS--------NLRYLNLAMCNLR-EIPN-LTPLIKLDELD 213

Query: 416 LGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPP 451
           L GNHL    P     L  L  + + +++    I  
Sbjct: 214 LSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ-VIER 248

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 69.0 bits (169), Expect = 2e-12
 Identities = 63/309 (20%), Positives = 108/309 (34%), Gaps = 65/309 (21%)

Query: 288 STSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISE 347
           S     +      L   +P      S+   +L++ +N ++        +L  L IL +S 
Sbjct: 42  SNQFSKVICVRKNLR-EVPD---GISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSR 97

Query: 348 NRLSGPIASSL-NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQI- 405
           N +      +   L+++  L L  N L  +  G      KL  L LR+N     IP    
Sbjct: 98  NHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAF 156

Query: 406 NEHSNLRFLLLGG-NHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSD 464
           N   +LR L LG    L          L  L  ++L+       IP     +        
Sbjct: 157 NRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPN-LTPL-------- 206

Query: 465 DVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNR 524
                 KL+  ELD       L  N  S    G ++ L  L+K                 
Sbjct: 207 -----IKLD--ELD-------LSGNHLSAIRPGSFQGLMHLQK----------------- 235

Query: 525 YEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPES-FSNLKM 583
                         L +  +Q+     +    LQ+++ +NL++N+L+  +P   F+ L  
Sbjct: 236 --------------LWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHH 280

Query: 584 IESLDISYN 592
           +E + + +N
Sbjct: 281 LERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 57.8 bits (140), Expect = 5e-09
 Identities = 59/270 (21%), Positives = 90/270 (33%), Gaps = 45/270 (16%)

Query: 356 SSLNLSSV--------EHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINE 407
              NL  V          L+L +N +  +          L  L L  N          N 
Sbjct: 51  VRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNG 110

Query: 408 HSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPP-CFANVLSWRVGSDDV 466
            +NL  L L  N L          L KL  + L  N    SIP   F  +          
Sbjct: 111 LANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRI---------- 159

Query: 467 LNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYE 526
                L   +L E          R S    G +  LS L           +  AM N  E
Sbjct: 160 ---PSLRRLDLGE--------LKRLSYISEGAFEGLSNLR---------YLNLAMCNLRE 199

Query: 527 IYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIES 586
           I N + + ++  LDLS N L+   P     L  +  L +  + +      +F NL+ +  
Sbjct: 200 IPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVE 259

Query: 587 LDISYNKLTGQIPP----QLTALNFLSIFN 612
           +++++N LT  +P      L  L  + + +
Sbjct: 260 INLAHNNLT-LLPHDLFTPLHHLERIHLHH 288

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 57.1 bits (138), Expect = 1e-08
 Identities = 52/264 (19%), Positives = 95/264 (35%), Gaps = 43/264 (16%)

Query: 361 SSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNH 420
           +    +   +  L   +P  +  +     LNL +N       +      +L  L L  NH
Sbjct: 43  NQFSKVICVRKNLRE-VPDGISTN--TRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH 99

Query: 421 LQGPIPDQLCQLQKLAMMDLSRNKFSGSIPP-CFANVLSWRVGSDDVLNGSKLNSPELDE 479
           ++         L  L  ++L  N+ + +IP   F  +   +               EL  
Sbjct: 100 IRTIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLK---------------ELW- 142

Query: 480 EIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNR-YEIYNGS--NVNRV 536
                 L NN   +     +  + +L           ++     R   I  G+   ++ +
Sbjct: 143 ------LRNNPIESIPSYAFNRIPSLR---------RLDLGELKRLSYISEGAFEGLSNL 187

Query: 537 TGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTG 596
             L+L+   L  EIP+    L  +  L+LS N LS   P SF  L  ++ L +  +++  
Sbjct: 188 RYLNLAMCNLR-EIPNLTP-LIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ- 244

Query: 597 QIPPQ-LTALNFLSIFNVSYNNLS 619
            I       L  L   N+++NNL+
Sbjct: 245 VIERNAFDNLQSLVEINLAHNNLT 268

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 79.8 bits (197), Expect = 3e-16
 Identities = 49/288 (17%), Positives = 100/288 (34%), Gaps = 42/288 (14%)

Query: 120 LKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGI-----LQLPKAKHDFLHHLDI 174
           +K LDLS+N++        L+    L+ L+L +N  + I       L       L HLD+
Sbjct: 54  VKSLDLSNNRI-TYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGS-----LEHLDL 107

Query: 175 SCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSA-GEMKELSLLDLSRNYFSGGLS 233
           S N     L  +    L  L ++++  N ++     S    + +L +L +        + 
Sbjct: 108 SYNYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQ 166

Query: 234 QSVVTGCFSLELLDLSNNNF----EGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSS- 288
           +    G   LE L++  ++              ++  + HL          + +  +   
Sbjct: 167 RKDFAGLTFLEELEIDASDLQSYEPKSL----KSIQNVSHLILHMKQHI-LLLEIFVDVT 221

Query: 289 TSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISEN 348
           +S++ L++ +  L                  +   + L       L      R + I++ 
Sbjct: 222 SSVECLELRDTDLD-----------------TFHFSELSTGETNSLIKKFTFRNVKITDE 264

Query: 349 RLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCK-LVTLNLRDN 395
            L   +     +S +  L   +N L   +P  +F     L  + L  N
Sbjct: 265 SLFQVMKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 77.9 bits (192), Expect = 1e-15
 Identities = 48/293 (16%), Positives = 98/293 (33%), Gaps = 42/293 (14%)

Query: 20  TRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTR 79
             +K LD+S+N++     S +    +L+ L L+ N       ++++   S    L     
Sbjct: 52  EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNG------INTIEEDS-FSSL----- 99

Query: 80  NNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLL 139
                           L  L L+   L+     +      L +L+L  N       T L 
Sbjct: 100 --------------GSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLF 145

Query: 140 RNNPKLEVLLLKNNSFSGILQLPK---AKHDFLHHLDISCNNFRGKLPHNMGVILQKLMY 196
            +  KL++L + N       ++ +   A   FL  L+I  ++ +          +Q + +
Sbjct: 146 SHLTKLQILRVGNMDT--FTKIQRKDFAGLTFLEELEIDASDLQ-SYEPKSLKSIQNVSH 202

Query: 197 MDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCF-------SLELLDLS 249
           + +        +         +  L+L            + TG         +   + ++
Sbjct: 203 LILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKIT 262

Query: 250 NNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSS-TSLQVLDISNNML 301
           + +   Q       ++ L  L F  N     + DG+    TSLQ + +  N  
Sbjct: 263 DESLF-QVMKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 77.1 bits (190), Expect = 3e-15
 Identities = 58/316 (18%), Positives = 113/316 (35%), Gaps = 60/316 (18%)

Query: 288 STSLQVLDISNNMLSGHIPHWMGNFSS--ELEILSMSKNHLEGNVPVQL-NNLERLRILD 344
           + +++ LD+SNN ++ +I +   +      L+ L ++ N +   +     ++L  L  LD
Sbjct: 51  TEAVKSLDLSNNRIT-YISN--SDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLD 106

Query: 345 ISENRLSGPIASSL--NLSSVEHLSLQKNALNGLIPGELFRSC-KLVTLNLRDNTFSGRI 401
           +S N LS  ++SS    LSS+  L+L  N    L    LF    KL  L + +     +I
Sbjct: 107 LSYNYLSN-LSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKI 165

Query: 402 PHQINEH-SNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWR 460
             +     + L  L +  + LQ   P  L  +Q ++ + L   +    +   F +V    
Sbjct: 166 QRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVT--- 221

Query: 461 VGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFA 520
                    S +   EL  + +  +   +  S                            
Sbjct: 222 ---------SSVECLELR-DTDLDTFHFSELSTGETNSLIKKFTFRN------------- 258

Query: 521 MKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPES-FS 579
                             + ++   L  ++   + Q+  +L L  S N L  S+P+  F 
Sbjct: 259 ------------------VKITDESLF-QVMKLLNQISGLLELEFSRNQLK-SVPDGIFD 298

Query: 580 NLKMIESLDISYNKLT 595
            L  ++ + +  N   
Sbjct: 299 RLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 73.6 bits (181), Expect = 3e-14
 Identities = 54/249 (21%), Positives = 95/249 (38%), Gaps = 21/249 (8%)

Query: 217 ELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNN---NFEGQFFSEYMNLTRLRHLYFE 273
            +  LDLS N  +  +S S +  C +L+ L L++N     E   FS   +L  L HL   
Sbjct: 53  AVKSLDLSNNRITY-ISNSDLQRCVNLQALVLTSNGINTIEEDSFS---SLGSLEHLDLS 108

Query: 274 NNNFSGKIKDGLLSS-TSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPV 332
            N  S  +        +SL  L++  N         + +  ++L+IL +        +  
Sbjct: 109 YNYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQR 167

Query: 333 Q-LNNLERLRILDISENRLSGPIASSL-NLSSVEHLSLQKNALNGLIPGELFRSCKLVTL 390
           +    L  L  L+I  + L      SL ++ +V HL L       L+   +  +  +  L
Sbjct: 168 KDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECL 227

Query: 391 NLRDNTFSGRIPHQINEHS--------NLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSR 442
            LRD         +++             R + +    L   +   L Q+  L  ++ SR
Sbjct: 228 ELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSR 286

Query: 443 NKFSGSIPP 451
           N+   S+P 
Sbjct: 287 NQLK-SVPD 294

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 59.0 bits (143), Expect = 2e-09
 Identities = 28/148 (18%), Positives = 52/148 (35%), Gaps = 12/148 (8%)

Query: 16  LKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLL 75
              LT L+ L+I ++ L    P  + ++ ++ +L L       +     +   S +E L 
Sbjct: 170 FAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLE 228

Query: 76  LSTRNNTLHVKTENWLPT----SQLIVLGLTKCNLNG----SYPDFLLHQYHLKYLDLSH 127
           L  R+  L     + L T    S +         +           L     L  L+ S 
Sbjct: 229 L--RDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSR 286

Query: 128 NKLVGNFPTWLLRNNPKLEVLLLKNNSF 155
           N+L  + P  +      L+ + L  N +
Sbjct: 287 NQLK-SVPDGIFDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 44.0 bits (104), Expect = 1e-04
 Identities = 31/89 (34%), Positives = 50/89 (56%), Gaps = 10/89 (11%)

Query: 536 VTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPE-SFSNLKMIESLDISYNKL 594
           V  LDLS N++T    SD+ +   + AL L++N ++ +I E SFS+L  +E LD+SYN L
Sbjct: 54  VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNYL 112

Query: 595 TGQIPPQ----LTALNFLSIFNVSYNNLS 619
           +  +       L++L FL++     N   
Sbjct: 113 S-NLSSSWFKPLSSLTFLNL---LGNPYK 137

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 77.7 bits (192), Expect = 7e-16
 Identities = 46/215 (21%), Positives = 76/215 (35%), Gaps = 19/215 (8%)

Query: 169 LHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSA-GEMKELSLLDLSRNY 227
              + +  N     +P       + L  + +  N     I  +A   +  L  LDLS N 
Sbjct: 34  SQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSDNA 91

Query: 228 FSGGLSQSVVTGCFSLELLDLSNNNF----EGQFFSEYMNLTRLRHLYFENNNFSGKIKD 283
               +  +   G   L  L L          G F      L  L++LY ++N     + D
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLF----RGLAALQYLYLQDNALQ-ALPD 146

Query: 284 GLLSS-TSLQVLDISNNMLSGHIPHWMGNFS--SELEILSMSKNHLEGNVPVQLNNLERL 340
                  +L  L +  N +S  +P     F     L+ L + +N +    P    +L RL
Sbjct: 147 DTFRDLGNLTHLFLHGNRIS-SVPE--RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRL 203

Query: 341 RILDISENRLSG-PIASSLNLSSVEHLSLQKNALN 374
             L +  N LS  P  +   L ++++L L  N   
Sbjct: 204 MTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 76.6 bits (189), Expect = 2e-15
 Identities = 40/205 (19%), Positives = 75/205 (36%), Gaps = 5/205 (2%)

Query: 242 SLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSS-TSLQVLDISNNM 300
           + + + L  N       + +     L  L+  +N  + +I     +    L+ LD+S+N 
Sbjct: 33  ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSDNA 91

Query: 301 LSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSG-PIASSLN 359
               +     +    L  L + +  L+   P     L  L+ L + +N L   P  +  +
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD 151

Query: 360 LSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEH-SNLRFLLLGG 418
           L ++ HL L  N ++ +          L  L L  N  +  +          L  L L  
Sbjct: 152 LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA-HVHPHAFRDLGRLMTLYLFA 210

Query: 419 NHLQGPIPDQLCQLQKLAMMDLSRN 443
           N+L     + L  L+ L  + L+ N
Sbjct: 211 NNLSALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 71.6 bits (176), Expect = 9e-14
 Identities = 47/240 (19%), Positives = 75/240 (31%), Gaps = 40/240 (16%)

Query: 20  TRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTR 79
              + + +  N+++    +      +L  L L  N        ++    + LE L LS  
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLS-D 89

Query: 80  NNTL-HVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWL 138
           N  L  V    +    +L  L L +C L    P        L+YL L  N L    P   
Sbjct: 90  NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALPDDT 148

Query: 139 LRNNPKLEVLLLKNNSFSGILQ-----LPKAKHDFLHHLDISCNNFRGKLPHNMGVILQK 193
            R+   L  L L  N  S + +     L       L  L +  N                
Sbjct: 149 FRDLGNLTHLFLHGNRISSVPERAFRGLHS-----LDRLLLHQNRVA------------- 190

Query: 194 LMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNF 253
                +  + F          +  L  L L  N  S  L    +    +L+ L L++N +
Sbjct: 191 ----HVHPHAFRD--------LGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 63.9 bits (156), Expect = 3e-11
 Identities = 42/207 (20%), Positives = 65/207 (31%), Gaps = 39/207 (18%)

Query: 2   NLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPS-VISNLTSLEYLDLSHNNFEGMF 60
            L  N +          L  L+ LD+S N    S+       L  L  L L     +   
Sbjct: 62  WLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-EL 120

Query: 61  PLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHL 120
                   + L+ L L   +N L    ++           L                 +L
Sbjct: 121 GPGLFRGLAALQYLYLQ--DNALQALPDDTFR-------DLG----------------NL 155

Query: 121 KYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDF-----LHHLDIS 175
            +L L  N++  + P    R    L+ LLL  N  + +       H F     L  L + 
Sbjct: 156 THLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHV-----HPHAFRDLGRLMTLYLF 209

Query: 176 CNNFRGKLPHNMGVILQKLMYMDISKN 202
            NN    LP      L+ L Y+ ++ N
Sbjct: 210 ANNLS-ALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 63.5 bits (155), Expect = 4e-11
 Identities = 35/169 (20%), Positives = 61/169 (36%), Gaps = 11/169 (6%)

Query: 287 SSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDIS 346
            +            L   +P       +  + + +  N +             L IL + 
Sbjct: 9   YNEPKVTTSCPQQGLQ-AVPV---GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLH 64

Query: 347 ENRLSGPIASSL-NLSSVEHLSLQKNALNGLIPGELFRSC-KLVTLNLRDNTFSGRIPHQ 404
            N L+   A++   L+ +E L L  NA    +    F    +L TL+L        +   
Sbjct: 65  SNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPG 123

Query: 405 I-NEHSNLRFLLLGGNHLQGPIPDQLCQ-LQKLAMMDLSRNKFSGSIPP 451
           +    + L++L L  N LQ  +PD   + L  L  + L  N+ S S+P 
Sbjct: 124 LFRGLAALQYLYLQDNALQA-LPDDTFRDLGNLTHLFLHGNRIS-SVPE 170

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 62.7 bits (153), Expect = 7e-11
 Identities = 41/173 (23%), Positives = 63/173 (36%), Gaps = 9/173 (5%)

Query: 288 STSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISE 347
             + Q + +  N +S H+P         L IL +  N L          L  L  LD+S+
Sbjct: 31  PAASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89

Query: 348 NRLSGPIASSL--NLSSVEHLSLQKNALNGLIPGELFRSC-KLVTLNLRDNTFSGRIPHQ 404
           N     +  +    L  +  L L +  L   +   LFR    L  L L+DN     +P  
Sbjct: 90  NAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQ-ALPDD 147

Query: 405 INEH-SNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPP-CFAN 455
                 NL  L L GN +          L  L  + L +N+ +  + P  F +
Sbjct: 148 TFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA-HVHPHAFRD 199

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 61.5 bits (150), Expect = 2e-10
 Identities = 34/142 (23%), Positives = 48/142 (33%), Gaps = 7/142 (4%)

Query: 16  LKNLTRLKILDISSNQLNGSLPS-VISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGL 74
              L RL  L +    L   L   +   L +L+YL L  N  +   P  +  +   L  L
Sbjct: 101 FHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHL 158

Query: 75  LLSTRNNTLHVKTENWL-PTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGN 133
            L    N +    E        L  L L +  +   +P        L  L L  N L   
Sbjct: 159 FLH--GNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS-A 215

Query: 134 FPTWLLRNNPKLEVLLLKNNSF 155
            PT  L     L+ L L +N +
Sbjct: 216 LPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 52.7 bits (127), Expect = 2e-07
 Identities = 44/272 (16%), Positives = 78/272 (28%), Gaps = 71/272 (26%)

Query: 356 SSLNLSSV--------EHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINE 407
               L +V        + + L  N ++ +          L  L L  N  +         
Sbjct: 19  PQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTG 78

Query: 408 HSNLRFLLLGGNHLQGPIPDQ-LCQLQKLAMMDLSRNKFSGSIPP-CFANVLSWRVGSDD 465
            + L  L L  N     +       L +L  + L R      + P  F  +         
Sbjct: 79  LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGL--------- 128

Query: 466 VLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRY 525
               + L    L        L +N         +R L  L                    
Sbjct: 129 ----AALQ--YLY-------LQDNALQALPDDTFRDLGNLTH------------------ 157

Query: 526 EIYNGSNVNRVTGLDLSCNQLTGEIPSDI-GQLQAILALNLSNNSLSGSIPESFSNLKMI 584
                        L L  N+++  +P      L ++  L L  N ++   P +F +L  +
Sbjct: 158 -------------LFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRL 203

Query: 585 ESLDISYNKLTGQIPP----QLTALNFLSIFN 612
            +L +  N L+  +P      L AL +L + +
Sbjct: 204 MTLYLFANNLS-ALPTEALAPLRALQYLRLND 234

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 46.1 bits (110), Expect = 2e-05
 Identities = 21/77 (27%), Positives = 30/77 (38%), Gaps = 1/77 (1%)

Query: 1   MNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMF 60
           + L  N I S      + L  L  L +  N++    P    +L  L  L L  NN     
Sbjct: 158 LFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS-AL 216

Query: 61  PLSSLANHSKLEGLLLS 77
           P  +LA    L+ L L+
Sbjct: 217 PTEALAPLRALQYLRLN 233

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 43.4 bits (103), Expect = 1e-04
 Identities = 20/92 (21%), Positives = 43/92 (46%), Gaps = 6/92 (6%)

Query: 531 SNVNRVTGLDLSCNQLTGEIPSDI-GQLQAILALNLSNNSLSGSIPE-SFSNLKMIESLD 588
             + R+  L L    L  E+   +   L A+  L L +N+L  ++P+ +F +L  +  L 
Sbjct: 102 HGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLF 159

Query: 589 ISYNKLTGQIPPQ-LTALNFLSIFNVSYNNLS 619
           +  N+++  +P +    L+ L    +  N ++
Sbjct: 160 LHGNRIS-SVPERAFRGLHSLDRLLLHQNRVA 190

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 17/84 (20%), Positives = 34/84 (40%), Gaps = 1/84 (1%)

Query: 537 TGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTG 596
             + L  N+++    +     + +  L L +N L+     +F+ L ++E LD+S N    
Sbjct: 35  QRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR 94

Query: 597 QIPPQ-LTALNFLSIFNVSYNNLS 619
            + P     L  L   ++    L 
Sbjct: 95  SVDPATFHGLGRLHTLHLDRCGLQ 118

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 77.3 bits (190), Expect = 7e-15
 Identities = 58/290 (20%), Positives = 97/290 (33%), Gaps = 34/290 (11%)

Query: 171 HLDISCNNFRGKL---PHNMGVILQKLMYMDISKNCFEGNIPY-SAGEMKELSLLDLSRN 226
           +  +S N+F   +     +      K     +        +       + + S L L+R 
Sbjct: 10  NFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRL 69

Query: 227 YFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLL 286
                LS         + +L+++ N        E      L +L   +N  S  + +   
Sbjct: 70  ----NLSSLPDNLPPQITVLEITQNALI--SLPE--LPASLEYLDACDNRLS-TLPELP- 119

Query: 287 SSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDIS 346
              SL+ LD+ NN L+  +P         LE ++   N L   +P    +LE L    + 
Sbjct: 120 --ASLKHLDVDNNQLT-MLPELPAL----LEYINADNNQLT-MLPELPTSLEVL---SVR 168

Query: 347 ENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKL----VTLNLRDNTFSGRIP 402
            N+L+          S+E L +  N L  L P    R+       +    R+N  +  IP
Sbjct: 169 NNQLTFLPEL---PESLEALDVSTNLLESL-PAVPVRNHHSEETEIFFRCRENRIT-HIP 223

Query: 403 HQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPC 452
             I        ++L  N L   I + L Q          R  FS S    
Sbjct: 224 ENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQ 273

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 71.2 bits (174), Expect = 6e-13
 Identities = 62/348 (17%), Positives = 107/348 (30%), Gaps = 67/348 (19%)

Query: 333 QLNNLERLRILDISENRLSGPIASSL----NLSSVEHLSLQKNALNGLIPGELFRSCKLV 388
            +NN   L   +   N +SG  A                  +N    L+   L       
Sbjct: 6   PINNNFSL-SQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQ--FS 62

Query: 389 TLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGS 448
            L L     S  +P  +     +  L +  N L   +P+    L+ L   D   N+ S +
Sbjct: 63  ELQLNRLNLS-SLPDNLP--PQITVLEITQNALI-SLPELPASLEYL---DACDNRLS-T 114

Query: 449 IPPCFANVLSWRVGSDDVLNGSKLNS-PELDEEIEFGSLGNNRSSNTMFGMWRWLSALEK 507
           +P   A++          ++ ++L   PEL   +E+ +  NN+           L+ L  
Sbjct: 115 LPELPASLKHLD------VDNNQLTMLPELPALLEYINADNNQ-----------LTMLP- 156

Query: 508 RAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSN 567
                                       +  L +  NQLT  +P     L+A   L++S 
Sbjct: 157 -----------------------ELPTSLEVLSVRNNQLT-FLPELPESLEA---LDVST 189

Query: 568 NSLSGSIPESFSNL----KMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTP 623
           N L  S+P          +         N++T  IP  + +L+      +  N LS R  
Sbjct: 190 NLLE-SLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIR 247

Query: 624 DKGQFATFDESSYRGNPSLCAWLIQQKYSRTLKPTTTQASGAEEEEEE 671
           +     T     +           QQ            A   E ++ +
Sbjct: 248 ESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSD 295

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 69.6 bits (170), Expect = 2e-12
 Identities = 59/306 (19%), Positives = 103/306 (33%), Gaps = 56/306 (18%)

Query: 18  NLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLS 77
           N   L   +   N ++G+     S     E   L   N                      
Sbjct: 9   NNFSL-SQNSFYNTISGTYADYFSAWDKWEKQALPGEN---------------------- 45

Query: 78  TRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTW 137
            RN  + +  E  +  +Q   L L + NL+ S PD L     +  L+++ N L+ + P  
Sbjct: 46  -RNEAVSLLKECLI--NQFSELQLNRLNLS-SLPDNLPP--QITVLEITQNALI-SLPEL 98

Query: 138 LLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYM 197
                  LE L   +N  S + +LP +    L HLD+  N     LP    + L+ +   
Sbjct: 99  P----ASLEYLDACDNRLSTLPELPAS----LKHLDVDNNQLT-MLPELPAL-LEYI--- 145

Query: 198 DISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEG-- 255
           +   N     +P     ++ LS+ +    +              SLE LD+S N  E   
Sbjct: 146 NADNNQLT-MLPELPTSLEVLSVRNNQLTFLPELPE--------SLEALDVSTNLLESLP 196

Query: 256 QFFSEYMNLTRLR-HLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSS 314
                  +            N  +  I + +LS      + + +N LS  I   +   ++
Sbjct: 197 AVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTA 255

Query: 315 ELEILS 320
           + +   
Sbjct: 256 QPDYHG 261

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 63.5 bits (154), Expect = 1e-10
 Identities = 57/314 (18%), Positives = 103/314 (32%), Gaps = 57/314 (18%)

Query: 294 LDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPV-QLNNLERLRILDISENRLSG 352
            +   N +SG       +   + E  ++   +    V + +   + +   L ++   LS 
Sbjct: 15  QNSFYNTISG-TYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLSS 73

Query: 353 PIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLR 412
            +  +L    +  L + +NAL  L P        L  L+  DN  S  +P      ++L+
Sbjct: 74  -LPDNL-PPQITVLEITQNALISL-PELP---ASLEYLDACDNRLS-TLPELP---ASLK 123

Query: 413 FLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFAN--VLSWRVGSDDVLNGS 470
            L +  N L   +P+    L+ +   +   N+ +  +P    +  VLS        +  +
Sbjct: 124 HLDVDNNQLTM-LPELPALLEYI---NADNNQLT-MLPELPTSLEVLS--------VRNN 170

Query: 471 KLNS-PELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYN 529
           +L   PEL E +E   +  N   +      R   + E                       
Sbjct: 171 QLTFLPELPESLEALDVSTNLLESLPAVPVRNHHSEETEIF------------------- 211

Query: 530 GSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDI 589
                         N++T  IP +I  L     + L +N LS  I ES S          
Sbjct: 212 ---------FRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHG 261

Query: 590 SYNKLTGQIPPQLT 603
                +     Q T
Sbjct: 262 PRIYFSMSDGQQNT 275

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 51.9 bits (124), Expect = 5e-07
 Identities = 39/186 (20%), Positives = 68/186 (36%), Gaps = 35/186 (18%)

Query: 12  LITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANH-SK 70
           LI+  +    L+ LD   N+L+ +LP + ++L    +LD+ +N       L+ L    + 
Sbjct: 92  LISLPELPASLEYLDACDNRLS-TLPELPASLK---HLDVDNNQ------LTMLPELPAL 141

Query: 71  LEGLLLSTRNNTLHVKTENWLPTS--QLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHN 128
           LE +     NN L +     LP     L VL +    L    P+       L+ LD+S N
Sbjct: 142 LEYINAD--NNQLTM-----LPELPTSLEVLSVRNNQLT-FLPELP---ESLEALDVSTN 190

Query: 129 KLVG--NFPTWLLRNNPKLEVLLLKNNSFS----GILQLPKAKHDFLHHLDISCNNFRGK 182
            L      P     +         + N  +     IL L          + +  N    +
Sbjct: 191 LLESLPAVPVRNHHSEETEIFFRCRENRITHIPENILSLDP-----TCTIILEDNPLSSR 245

Query: 183 LPHNMG 188
           +  ++ 
Sbjct: 246 IRESLS 251

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 71.3 bits (174), Expect = 6e-13
 Identities = 43/228 (18%), Positives = 86/228 (37%), Gaps = 25/228 (10%)

Query: 191 LQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSN 250
             + +  ++ K      +  +  E+  +  +  + +      S   +    ++  L L+ 
Sbjct: 20  FAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIK---SVQGIQYLPNVTKLFLNG 74

Query: 251 NNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKD--GLLSSTSLQVLDISNNMLS--GHIP 306
           N           NL  L  L+ + N    KIKD   L     L+ L + +N +S    + 
Sbjct: 75  NKLTD--IKPLTNLKNLGWLFLDEN----KIKDLSSLKDLKKLKSLSLEHNGISDINGLV 128

Query: 307 HWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHL 366
           H       +LE L +  N +  ++ V L+ L +L  L + +N++S  I     L+ +++L
Sbjct: 129 HL-----PQLESLYLGNNKIT-DITV-LSRLTKLDTLSLEDNQISD-IVPLAGLTKLQNL 180

Query: 367 SLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFL 414
            L KN ++ L    L     L  L L       +  +  +       +
Sbjct: 181 YLSKNHISDLRA--LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTV 226

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 70.5 bits (172), Expect = 9e-13
 Identities = 53/379 (13%), Positives = 100/379 (26%), Gaps = 106/379 (27%)

Query: 13  ITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLE 72
           I            ++    +        + L S++ +  ++++ + +  +  L N     
Sbjct: 14  IFPDDAFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIKSVQGIQYLPN----- 66

Query: 73  GLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVG 132
                                                          +  L L+ NKL  
Sbjct: 67  -----------------------------------------------VTKLFLNGNKLTD 79

Query: 133 NFPTWLLRNNPKLEVLLLKNN---SFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGV 189
             P   L N   L  L L  N     S +  L K     L  L +  N            
Sbjct: 80  IKP---LTNLKNLGWLFLDENKIKDLSSLKDLKK-----LKSLSLEHNGIS--------- 122

Query: 190 ILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLS 249
                   DI+       +      + +L  L L  N  +     +V++    L+ L L 
Sbjct: 123 --------DIN------GLV----HLPQLESLYLGNNKIT---DITVLSRLTKLDTLSLE 161

Query: 250 NNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKD--GLLSSTSLQVLDISNNMLSGHIPH 307
           +N            LT+L++LY   N     I D   L    +L VL++ +        +
Sbjct: 162 DNQISD--IVPLAGLTKLQNLYLSKN----HISDLRALAGLKNLDVLELFSQECLNKPIN 215

Query: 308 WMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLS 367
              N       +  +   L    P  +++       ++  +        S        + 
Sbjct: 216 HQSNL-VVPNTVKNTDGSL--VTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIG 272

Query: 368 LQKNALNGLIPGELFRSCK 386
             K   +G +   L     
Sbjct: 273 KAKARFHGRVTQPLKEVYT 291

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 69.4 bits (169), Expect = 2e-12
 Identities = 50/279 (17%), Positives = 90/279 (32%), Gaps = 70/279 (25%)

Query: 2   NLERNFIGSPLIT---CLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEG 58
              ++ +    +T       L  +  +  +++ +  S+   I  L ++  L L+ N    
Sbjct: 22  ETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIK-SV-QGIQYLPNVTKLFLNGNKLTD 79

Query: 59  MFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQY 118
           + PL++L N   L  L L    N +              +  L                 
Sbjct: 80  IKPLTNLKN---LGWLFLD--ENKIKD------------LSSLKDLK------------- 109

Query: 119 HLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNN 178
            LK L L HN +        L + P+LE L L NN  + I  L +     L  L +  N 
Sbjct: 110 KLKSLSLEHNGISDING---LVHLPQLESLYLGNNKITDITVLSRLTK--LDTLSLEDNQ 164

Query: 179 FRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVT 238
                              DI               + +L  L LS+N+ S       + 
Sbjct: 165 IS-----------------DIV----------PLAGLTKLQNLYLSKNHIS---DLRALA 194

Query: 239 GCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNF 277
           G  +L++L+L +     +  +   NL     +   + + 
Sbjct: 195 GLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 233

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 64.4 bits (156), Expect = 7e-11
 Identities = 56/368 (15%), Positives = 124/368 (33%), Gaps = 52/368 (14%)

Query: 120 LKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNF 179
           +         +   FP        +     LK  S +  +   +     +  +  + ++ 
Sbjct: 1   MGETITVSTPIKQIFP---DDAFAETIKDNLKKKSVTDAVTQNELNS--IDQIIANNSDI 55

Query: 180 RGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTG 239
           +                  +        I Y    +  ++ L L+ N  +       +T 
Sbjct: 56  K-----------------SVQ------GIQY----LPNVTKLFLNGNKLT---DIKPLTN 85

Query: 240 CFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNN 299
             +L  L L  N  +    S   +L +L+ L  E+N  S  I +GL+    L+ L + NN
Sbjct: 86  LKNLGWLFLDENKIKD--LSSLKDLKKLKSLSLEHNGIS-DI-NGLVHLPQLESLYLGNN 141

Query: 300 MLSGHIPHWMGNFS--SELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASS 357
            ++      +   S  ++L+ LS+  N +   VP  L  L +L+ L +S+N +S  + + 
Sbjct: 142 KITD-----ITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS-DLRAL 193

Query: 358 LNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLG 417
             L +++ L L                    T+   D +     P  I++  +     + 
Sbjct: 194 AGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL--VTPEIISDDGDYEKPNVK 251

Query: 418 GNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPEL 477
            +  +          Q +  +  ++ +F G +      V +     D  +  +K+ +   
Sbjct: 252 WHLPEFTNEVSFIFYQPV-TIGKAKARFHGRVTQPLKEVYTVSYDVDGTVIKTKVEAGTR 310

Query: 478 DEEIEFGS 485
               +  +
Sbjct: 311 ITAPKPPT 318

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 44.7 bits (105), Expect = 8e-05
 Identities = 21/89 (23%), Positives = 44/89 (49%), Gaps = 6/89 (6%)

Query: 531 SNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDIS 590
            ++ ++  L L  N ++ +I + +  L  + +L L NN ++       S L  +++L + 
Sbjct: 106 KDLKKLKSLSLEHNGIS-DI-NGLVHLPQLESLYLGNNKIT--DITVLSRLTKLDTLSLE 161

Query: 591 YNKLTGQIPPQLTALNFLSIFNVSYNNLS 619
            N+++  I P L  L  L    +S N++S
Sbjct: 162 DNQIS-DIVP-LAGLTKLQNLYLSKNHIS 188

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 43.2 bits (101), Expect = 3e-04
 Identities = 20/94 (21%), Positives = 38/94 (40%), Gaps = 6/94 (6%)

Query: 526 EIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIE 585
           +I+           +L    +T  +     +L +I  +  +N+ +  S+ +    L  + 
Sbjct: 13  QIFPDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SV-QGIQYLPNVT 68

Query: 586 SLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLS 619
            L ++ NKLT  I P LT L  L    +  N + 
Sbjct: 69  KLFLNGNKLT-DIKP-LTNLKNLGWLFLDENKIK 100

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 71.0 bits (173), Expect = 8e-13
 Identities = 106/632 (16%), Positives = 193/632 (30%), Gaps = 168/632 (26%)

Query: 112 DFLLHQYHLKYLD-LSHN--KLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDF 168
           DF   ++  +Y D LS      V NF    +++ PK    +L       I+    A    
Sbjct: 8   DFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPK---SILSKEEIDHIIMSKDAVSGT 64

Query: 169 LHHLDISCNN--------FRGKLPHNMGVILQKL------------MYMDISKNCFEGNI 208
           L       +             L  N   ++  +            MY++     +  N 
Sbjct: 65  LRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ 124

Query: 209 PYSAG------EMKEL--SLLDLSRN-----YFSGGLSQSVVTG--CFSLELLDLSNNNF 253
            ++           +L  +LL+L            G  ++ V    C S ++        
Sbjct: 125 VFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQC----KM 180

Query: 254 EGQFFSEYMNLTRLR--HLYFEN-NNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMG 310
           + + F  ++NL          E       +I             D S+N     I   + 
Sbjct: 181 DFKIF--WLNLKNCNSPETVLEMLQKLLYQI-----DPNWTSRSDHSSN-----IKLRIH 228

Query: 311 NFSSELEILSMSKNHLEG-----NVPVQLNNLERLRILDIS-----ENRLSGPIASSLNL 360
           +  +EL  L  SK +        NV     N +     ++S       R    +   L+ 
Sbjct: 229 SIQAELRRLLKSKPYENCLLVLLNV----QNAKAWNAFNLSCKILLTTRFKQ-VTDFLSA 283

Query: 361 SSVEHLSLQKNALNGLIPGE---LFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLG 417
           ++  H+SL  +    L P E   L        L+ R       +P ++   +  R  ++ 
Sbjct: 284 ATTTHISLDHH-SMTLTPDEVKSLLLKY----LDCR----PQDLPREVLTTNPRRLSIIA 334

Query: 418 GNHLQGPI---------PDQLCQLQKLAMMDLS----RNKF--------SGSIPPCFANV 456
            +   G            D+L  + + ++  L     R  F        S  IP     +
Sbjct: 335 ESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPT---IL 391

Query: 457 LS--WRVGSDDVLNGSKLNSPELDEEIEFGSL---GNNRSSNTMFGMWRWLSALEKRAAI 511
           LS  W        +  K +   +  ++   SL       S+ ++  +      LE +  +
Sbjct: 392 LSLIW-------FDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSI-----YLELKVKL 439

Query: 512 DERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIG-QLQAI---------- 560
           +    +  ++ + Y I    + +     DL    L     S IG  L+ I          
Sbjct: 440 ENEYALHRSIVDHYNIPKTFDSD-----DLIPPYLDQYFYSHIGHHLKNIEHPERMTLFR 494

Query: 561 -LALNL-----------SNNSLSGSIPESFSNLKM----IESLDISYNKLTGQIPPQLTA 604
            + L+            +  + SGSI  +   LK     I   D  Y +L   I      
Sbjct: 495 MVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAI------ 548

Query: 605 LNFLSIFNVSYNNLSGRTPDKGQFATFDESSY 636
           L+FL    +  N +  +  D  + A   E   
Sbjct: 549 LDFL--PKIEENLICSKYTDLLRIALMAEDEA 578

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.9 bits (118), Expect = 3e-06
 Identities = 49/301 (16%), Positives = 91/301 (30%), Gaps = 82/301 (27%)

Query: 9   GSPLITCL------KNLTRLK-ILDISSNQLNGSLPSVISNLTSLE----YLDLSHNNFE 57
            +P    +        L        ++ ++L   + S ++ L   E    +  LS     
Sbjct: 325 TNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS----- 379

Query: 58  GMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLP----TSQLIVLGLTKCNLNGSYPDF 113
            +FP       + +  +LLS     +      W         ++V  L K +L    P  
Sbjct: 380 -VFP-----PSAHIPTILLSL----I------WFDVIKSDVMVVVNKLHKYSLVEKQPKE 423

Query: 114 LLHQYHLKYLDLS---------HNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKA 164
                   YL+L          H  +V ++      ++  L    L    +S        
Sbjct: 424 STISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYS-------- 475

Query: 165 KHDFL-HHLDISCNN------FRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKE 217
               + HHL  +  +      FR  +  +   + QK+ +   + N        S   +  
Sbjct: 476 ---HIGHHLK-NIEHPERMTLFR-MVFLDFRFLEQKIRHDSTAWNA-------SGSILNT 523

Query: 218 LSLLDLSRNYFS---GGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFEN 274
           L  L   + Y         + V        +LD      E    S+Y +L R+  L  E+
Sbjct: 524 LQQLKFYKPYICDNDPKYERLVNA------ILDFLPKIEENLICSKYTDLLRIA-LMAED 576

Query: 275 N 275
            
Sbjct: 577 E 577

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.8 bits (97), Expect = 8e-04
 Identities = 56/477 (11%), Positives = 119/477 (24%), Gaps = 152/477 (31%)

Query: 166 HDFLHHLDISCN----NFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLL 221
           H   HH+D         ++  L       +      D+                      
Sbjct: 1   HHHHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDV---------------------Q 39

Query: 222 DLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKI 281
           D+ ++  S              E+  +               ++    L+          
Sbjct: 40  DMPKSILS------------KEEIDHI---------IMSKDAVSGTLRLF---------- 68

Query: 282 KDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLR 341
              LLS     V      +L  +   ++           MS    E   P        + 
Sbjct: 69  -WTLLSKQEEMVQKFVEEVLRINYK-FL-----------MSPIKTEQRQP------SMMT 109

Query: 342 ILDISE-NRL--SGPIASSLNLSSVEHLSLQKNALNGLIPGELF---------RSCKLVT 389
            + I + +RL     + +  N+S ++     + AL  L P +           ++  +  
Sbjct: 110 RMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTW-VAL 168

Query: 390 LNLRDNT----FSGRI----------PHQINEHSNLRFLLLGGNHLQGP-----IPDQLC 430
                         +I          P  + E        +  N          I  ++ 
Sbjct: 169 DVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH 228

Query: 431 QLQK-----LAMMDLSR--------------NKFSGSIPPCFANVLSWRVGSDDVLNGSK 471
            +Q      L                     N F+ S   C   + +      D L+ + 
Sbjct: 229 SIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLS---CKILLTTRFKQVTDFLSAAT 285

Query: 472 LNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSA--LEKRAA---------IDERVEIEFA 520
                LD      +L       ++   +       L +            I E +    A
Sbjct: 286 TTHISLDHHSM--TL-TPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLA 342

Query: 521 MKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPES 577
             + ++  N   +  +  ++ S N L    P++  ++   L++    ++    IP  
Sbjct: 343 TWDNWKHVNCDKLTTI--IESSLNVLE---PAEYRKMFDRLSV-FPPSAH---IPTI 390

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 68.6 bits (168), Expect = 1e-12
 Identities = 47/265 (17%), Positives = 100/265 (37%), Gaps = 30/265 (11%)

Query: 191 LQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSN 250
           L   + +   K+     +  +  ++  ++ L       +   +   V    +L  L+L +
Sbjct: 18  LANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVT---TIEGVQYLNNLIGLELKD 72

Query: 251 NNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKD--GLLSSTSLQVLDISNNMLSGHIPHW 308
           N       +   NLT++  L    N     +K+   +    S++ LD+++  ++      
Sbjct: 73  NQITD--LAPLKNLTKITELELSGN----PLKNVSAIAGLQSIKTLDLTSTQITD----- 121

Query: 309 MGNFS--SELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHL 366
           +   +  S L++L +  N +    P  L  L  L+ L I   ++S  +    NLS +  L
Sbjct: 122 VTPLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSD-LTPLANLSKLTTL 178

Query: 367 SLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIP 426
               N ++ + P  L     L+ ++L++N  S   P  +   SNL  + L    +     
Sbjct: 179 KADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQPV 234

Query: 427 DQLCQLQKLAMMDLSRNKFSGSIPP 451
                   L + ++ +      I P
Sbjct: 235 ---FYNNNLVVPNVVKGPSGAPIAP 256

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 65.9 bits (161), Expect = 9e-12
 Identities = 44/289 (15%), Positives = 84/289 (29%), Gaps = 54/289 (18%)

Query: 13  ITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLE 72
           I     L     +    + +        ++L  +  L         +  +  L N   L 
Sbjct: 12  IFPDPALANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVTTIEGVQYLNN---LI 66

Query: 73  GLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVG 132
           GL L   +N +                         +    L +   +  L+LS N L  
Sbjct: 67  GLELK--DNQI-------------------------TDLAPLKNLTKITELELSGNPLKN 99

Query: 133 NFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVI-- 190
                 +     ++ L L +   + +  L    +  L  L +  N        N+  +  
Sbjct: 100 VSA---IAGLQSIKTLDLTSTQITDVTPLAGLSN--LQVLYLDLNQIT-----NISPLAG 149

Query: 191 LQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSN 250
           L  L Y+ I         P +   + +L+ L    N  S     S +    +L  + L N
Sbjct: 150 LTNLQYLSIGNAQVSDLTPLA--NLSKLTTLKADDNKIS---DISPLASLPNLIEVHLKN 204

Query: 251 NNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNN 299
           N       S   N + L  +   N   +      +  + +L V ++   
Sbjct: 205 NQISD--VSPLANTSNLFIVTLTNQTIT---NQPVFYNNNLVVPNVVKG 248

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 60.1 bits (146), Expect = 6e-10
 Identities = 40/220 (18%), Positives = 81/220 (36%), Gaps = 20/220 (9%)

Query: 2   NLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFP 61
           +     + +  I  ++ L  L  L++  NQ+  +  + + NLT +  L+LS N  + +  
Sbjct: 47  SAFGTGVTT--IEGVQYLNNLIGLELKDNQI--TDLAPLKNLTKITELELSGNPLKNVSA 102

Query: 62  LSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLK 121
           ++ L +   ++ L L+       V     L    L VL L    +  +    L    +L+
Sbjct: 103 IAGLQS---IKTLDLT-STQITDVTPLAGLS--NLQVLYLDLNQI--TNISPLAGLTNLQ 154

Query: 122 YLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRG 181
           YL + + ++    P   L N  KL  L   +N  S I  L  A    L  + +  N    
Sbjct: 155 YLSIGNAQVSDLTP---LANLSKLTTLKADDNKISDISPL--ASLPNLIEVHLKNNQIS- 208

Query: 182 KLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLL 221
            +          L  + ++         +    +   +++
Sbjct: 209 DVSPLAN--TSNLFIVTLTNQTITNQPVFYNNNLVVPNVV 246

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 69.6 bits (170), Expect = 2e-12
 Identities = 65/386 (16%), Positives = 126/386 (32%), Gaps = 43/386 (11%)

Query: 9   GSPLITCLKNLTRLKILDISSNQLNG----SLPSVISNLTSLEYLDLSHNNFEGMFPLSS 64
           G  L    ++ T L++L+    +        L ++  N  SL  + +       +     
Sbjct: 181 GKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFK 240

Query: 65  LANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLD 124
            A + +         +  +  K  N +   +L  LGL+    N   P        ++ LD
Sbjct: 241 AAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEM-PILFPFAAQIRKLD 299

Query: 125 LSHNKLVGNFPTWLLRNNPKLEVLLLKNN-SFSGILQLPKAKHDFLHHLDIS-CNNFRGK 182
           L +  L       L++  P LEVL  +N     G+  L +     L  L I    + +G 
Sbjct: 300 LLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQ-LKRLRIERGADEQGM 358

Query: 183 LPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFS 242
                 V  + L+   +++ C            +EL  + +  +  +    +S+ T   +
Sbjct: 359 EDEEGLVSQRGLIA--LAQGC------------QELEYMAVYVSDITNESLESIGTYLKN 404

Query: 243 LELLDLSNNNFEGQFFSEYM---------NLTRLRHLYFENNNFSGKIKDGLLS-----S 288
           L    L   + E +     +            +LR   F      G + D  LS     S
Sbjct: 405 LCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLR--QGGLTDLGLSYIGQYS 462

Query: 289 TSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHL-EGNVPVQLNNLERLRILDISE 347
            +++ + +     S             L+ L M      E  +   +  L  LR L +  
Sbjct: 463 PNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQG 522

Query: 348 NRLS----GPIASSLNLSSVEHLSLQ 369
            R S      +  +    ++E +  +
Sbjct: 523 YRASMTGQDLMQMARPYWNIELIPSR 548

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 47.6 bits (113), Expect = 1e-05
 Identities = 53/343 (15%), Positives = 113/343 (32%), Gaps = 27/343 (7%)

Query: 115 LHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDI 174
           +     +++ ++        P  L R  P L  L LK    + +  L     ++  ++  
Sbjct: 47  IDSETREHVTMALCYTA--TPDRLSRRFPNLRSLKLKGKPRAAMFNL--IPENWGGYVTP 102

Query: 175 SCNNFRGKLPHNMGVILQKL--MYMDISKNCFEGNIPYSAGEMKELSLLDLS--RNYFSG 230
                   L       L+ +    M +S    +     +     +L  L L     + + 
Sbjct: 103 WVTEISNNLRQ-----LKSVHFRRMIVSDLDLD---RLAKARADDLETLKLDKCSGFTTD 154

Query: 231 GLSQSVVTGCFSLELLDLSNNNF---EGQFFSEY-MNLTRLRHLYFENNNFSGKIKDGLL 286
           GL  S+VT C  ++ L +  ++F   +G++  E   + T L  L F    F+      L 
Sbjct: 155 GL-LSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLE 213

Query: 287 S----STSLQVLDISN-NMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLR 341
           +      SL  + + +  +L             E    S++++       + L    +L 
Sbjct: 214 TIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLC 273

Query: 342 ILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSC-KLVTLNLRDNTFSGR 400
            L +S    +         + +  L L    L       L + C  L  L  R+      
Sbjct: 274 RLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRG 333

Query: 401 IPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRN 443
           +         L+ L +     +  + D+   + +  ++ L++ 
Sbjct: 334 LEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQG 376

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 68.6 bits (168), Expect = 2e-12
 Identities = 66/401 (16%), Positives = 124/401 (30%), Gaps = 88/401 (21%)

Query: 16  LKNLTRLKILDISSNQLNG----SLPSVISNLTSLEYLDLSHNNF--EGMFPLSS-LANH 68
           +   + ++   +  + +      S+ +V+    S++ + LS N    E    LS  +A+ 
Sbjct: 1   MARFS-IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASK 59

Query: 69  SKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHN 128
             LE    S  +       +      +L++  L KC               L  + LS N
Sbjct: 60  KDLEIAEFS--DIFTGRVKDEIPEALRLLLQALLKCP-------------KLHTVRLSDN 104

Query: 129 KLVGNFPTWL---LRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPH 185
                    L   L  +  LE L L NN                     +          
Sbjct: 105 AFGPTAQEPLIDFLSKHTPLEHLYLHNNGLG----------------PQAG--------A 140

Query: 186 NMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQ---SVVTGCFS 242
            +   LQ+L     +KN               L  +   RN    G  +           
Sbjct: 141 KIARALQELAVNKKAKNA------------PPLRSIICGRNRLENGSMKEWAKTFQSHRL 188

Query: 243 LELLDLSNNNF--EG--QFFSEYM-NLTRLRHLYFENNNFSGK----IKDGLLSSTSLQV 293
           L  + +  N    EG      E +     L+ L  ++N F+      +   L S  +L+ 
Sbjct: 189 LHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRE 248

Query: 294 LDISNNMLSGH-----IPHWMGNFSSELEILSMSKNHLEGNVPVQL-----NNLERLRIL 343
           L +++ +LS       +  +    +  L+ L +  N +E +    L       +  L  L
Sbjct: 249 LGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFL 308

Query: 344 DISENRLS--GPIASSLN--LSSVEHLSLQKNALNGLIPGE 380
           +++ NR S    +   +    S+     L +      +  E
Sbjct: 309 ELNGNRFSEEDDVVDEIREVFSTRGRGELDELDDMEELTDE 349

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 66.7 bits (163), Expect = 9e-12
 Identities = 56/296 (18%), Positives = 85/296 (28%), Gaps = 62/296 (20%)

Query: 2   NLERNFIG----SPLITCLKNLTRLKILDISSNQLN----------GSLPSVISNLTSLE 47
            L  N IG      L   + +   L+I + S                 L   +     L 
Sbjct: 38  VLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLH 97

Query: 48  YLDLSHNNF--EGMFPLSS-LANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKC 104
            + LS N F      PL   L+ H+ LE L L   NN L  +          I   L + 
Sbjct: 98  TVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLH--NNGLGPQ------AGAKIARALQEL 149

Query: 105 NLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTW----LLRNNPKLEVLLLKNNSF----- 155
            +N        +   L+ +    N+L  N          +++  L  + +  N       
Sbjct: 150 AVNKK----AKNAPPLRSIICGRNRL-ENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGI 204

Query: 156 SGILQLPKAKHDFLHHLDISCNNFRGK--------LPHNMGVILQKLMYMDISKNCF--E 205
             +L    A    L  LD+  N F           L          L  + ++       
Sbjct: 205 EHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSW-----PNLRELGLNDCLLSAR 259

Query: 206 GNIP----YSAGEMKELSLLDLSRNYFSG----GLSQSVVTGCFSLELLDLSNNNF 253
           G       +S  E   L  L L  N         L   +      L  L+L+ N F
Sbjct: 260 GAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 63.6 bits (155), Expect = 8e-11
 Identities = 59/344 (17%), Positives = 105/344 (30%), Gaps = 80/344 (23%)

Query: 2   NLERNFIGS----PLITCLKNLTRLKILDISSNQLNG----SLPSVISNLTSLEYLDLSH 53
           +L+ + I +     +   L     +K + +S N +       L   I++   LE  + S 
Sbjct: 10  SLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSD 69

Query: 54  NNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNL--NGSYP 111
                +      A    L+ L                    +L  + L+          P
Sbjct: 70  IFTGRVKDEIPEALRLLLQAL----LKCP------------KLHTVRLSDNAFGPTAQEP 113

Query: 112 --DFLLHQYHLKYLDLSHNK------------LVGNFPTWLLRNNPKLEVLLLKNNSFS- 156
             DFL     L++L L +N             L         +N P L  ++   N    
Sbjct: 114 LIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN 173

Query: 157 -GILQLPKA--KHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAG 213
             + +  K    H  LH + +  N  R +     G+               E  +     
Sbjct: 174 GSMKEWAKTFQSHRLLHTVKMVQNGIRPE-----GI---------------EHLLLEGLA 213

Query: 214 EMKELSLLDLSRNYFSGGLSQ---SVVTGCFSLELLDLSNNNFE-------GQFFSEYMN 263
             +EL +LDL  N F+   S      +    +L  L L++              FS+  N
Sbjct: 214 YCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLEN 273

Query: 264 LTRLRHLYFENNNFSGK----IKDGLLSS-TSLQVLDISNNMLS 302
           +  L+ L  + N         +K  +      L  L+++ N  S
Sbjct: 274 IG-LQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 55.5 bits (134), Expect = 3e-08
 Identities = 48/241 (19%), Positives = 84/241 (34%), Gaps = 45/241 (18%)

Query: 214 EMKELSLLDLSRNYFSGGLSQ---SVVTGCFSLELLDLSNNNFEGQFFSEY--------- 261
           E   +  + LS N      ++     +     LE+ + S+  F G+   E          
Sbjct: 30  EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDI-FTGRVKDEIPEALRLLLQ 88

Query: 262 --MNLTRLRHLYFENNNFSGK----IKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSE 315
             +   +L  +   +N F       + D L   T L+ L + NN L    P      +  
Sbjct: 89  ALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLG---PQAGAKIARA 145

Query: 316 LEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGP----IASSL-NLSSVEHLSLQK 370
           L+ L+++K            N   LR +    NRL        A +  +   +  + + +
Sbjct: 146 LQELAVNKK---------AKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQ 196

Query: 371 NALN----GLIPGELFRSCK-LVTLNLRDNTFSGR----IPHQINEHSNLRFLLLGGNHL 421
           N +       +  E    C+ L  L+L+DNTF+      +   +    NLR L L    L
Sbjct: 197 NGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLL 256

Query: 422 Q 422
            
Sbjct: 257 S 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 67.5 bits (165), Expect = 3e-12
 Identities = 41/273 (15%), Positives = 81/273 (29%), Gaps = 63/273 (23%)

Query: 20  TRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTR 79
                L     +L        S    LE +++S N+   +      +N  KL  + +   
Sbjct: 30  RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89

Query: 80  NNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLL 139
           NN L++                         P+   +  +L+YL +S+  +  + P    
Sbjct: 90  NNLLYIN------------------------PEAFQNLPNLQYLLISNTGIK-HLPDVHK 124

Query: 140 RNNPKLEVLLLKNN---------SFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNM--G 188
            ++ +  +L +++N         SF G+             L ++ N  + ++ ++   G
Sbjct: 125 IHSLQKVLLDIQDNINIHTIERNSFVGLSFE-------SVILWLNKNGIQ-EIHNSAFNG 176

Query: 189 VILQKLMYMD------ISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFS 242
             L +L   D      +  + F G             +LD+SR      L    +     
Sbjct: 177 TQLDELNLSDNNNLEELPNDVFHG--------ASGPVILDISRTRIH-SLPSYGLENLKK 227

Query: 243 LELLDLSNNNFEGQFFSEYMNLTRLRHLYFENN 275
           L      N             L  L        
Sbjct: 228 LRARSTYNLKKLPTLE----KLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 59.5 bits (144), Expect = 1e-09
 Identities = 38/229 (16%), Positives = 69/229 (30%), Gaps = 10/229 (4%)

Query: 2   NLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPS-VISNLTSLEYLDLSHNNFEGMF 60
                 +             L+ ++IS N +   + + V SNL  L  + +   N     
Sbjct: 36  RFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYI 95

Query: 61  PLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPD--FLLHQY 118
              +  N   L+ LL+S      H+   + + + Q ++L +       +     F+   +
Sbjct: 96  NPEAFQNLPNLQYLLIS-NTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSF 154

Query: 119 HLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNN 178
               L L+ N +               E+ L  NN+   +             LDIS   
Sbjct: 155 ESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR 213

Query: 179 FRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNY 227
               LP      L+KL             +P     +  L    L+   
Sbjct: 214 IH-SLPSYGLENLKKLRARSTYNL---KKLPTLEK-LVALMEASLTYPS 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 56.8 bits (137), Expect = 1e-08
 Identities = 37/176 (21%), Positives = 65/176 (36%), Gaps = 12/176 (6%)

Query: 288 STSLQVLDISNNMLSGHIPHWMGNFS--SELEILSMSKNHLEGNVPVQ-LNNLERLRILD 344
             +   L      L   I    G FS   +LE + +S+N +   +     +NL +L  + 
Sbjct: 29  PRNAIELRFVLTKLR-VIQK--GAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIR 85

Query: 345 ISE-NRLSG-PIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIP 402
           I + N L      +  NL ++++L +    +  L       S + V L+++DN     I 
Sbjct: 86  IEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIE 145

Query: 403 HQI--NEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPP-CFAN 455
                        L L  N +Q  I +      +L  ++LS N     +P   F  
Sbjct: 146 RNSFVGLSFESVILWLNKNGIQE-IHNSAFNGTQLDELNLSDNNNLEELPNDVFHG 200

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 56.0 bits (135), Expect = 2e-08
 Identities = 46/310 (14%), Positives = 93/310 (30%), Gaps = 70/310 (22%)

Query: 290 SLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENR 349
           S +V     + ++  IP    +       L      L        +    L  ++IS+N 
Sbjct: 10  SNRVFLCQESKVT-EIPS---DLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQND 65

Query: 350 LSGPIASSL--NLSSVEHLSLQKNALNGLIPGELFRSC-KLVTLNLRDNTFSGRIPHQIN 406
           +   I + +  NL  +  + ++K      I  E F++   L  L + +      +P    
Sbjct: 66  VLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHK 124

Query: 407 EHS-NLRFLLLGGN-HLQGPIPDQLCQLQ-KLAMMDLSRNKFSGSIPPCFANVLSWRVGS 463
            HS     L +  N ++     +    L  +  ++ L++N     I              
Sbjct: 125 IHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHN------------ 171

Query: 464 DDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKN 523
               NG++L+   L          NN        ++   S                    
Sbjct: 172 -SAFNGTQLDELNL--------SDNNNLEELPNDVFHGASGPVI---------------- 206

Query: 524 RYEIYNGSNVNRVTGLDLSCNQLTGEIPSDI-GQLQAILALNLSNNSLSGSIPESFSNLK 582
                          LD+S  ++   +PS     L+ + A +  N      +P +   L 
Sbjct: 207 ---------------LDISRTRIH-SLPSYGLENLKKLRARSTYNLK---KLP-TLEKLV 246

Query: 583 MIESLDISYN 592
            +    ++Y 
Sbjct: 247 ALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 55.2 bits (133), Expect = 3e-08
 Identities = 47/263 (17%), Positives = 81/263 (30%), Gaps = 51/263 (19%)

Query: 119 HLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQ------LPKAKHDFLHHL 172
           +   L     KL              LE + +  N    +++      LPK     LH +
Sbjct: 31  NAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPK-----LHEI 84

Query: 173 DISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGL 232
            I   N    +       L  L Y+ IS    +           +  LLD+  N     +
Sbjct: 85  RIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTI 144

Query: 233 SQSVVTGC-FSLELLDLSNNNF----EGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLS 287
            ++   G  F   +L L+ N         F     N T+L  L   +NN   ++ + +  
Sbjct: 145 ERNSFVGLSFESVILWLNKNGIQEIHNSAF-----NGTQLDELNLSDNNNLEELPNDVFH 199

Query: 288 S-TSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDIS 346
             +   +LDIS   +   +P +                         L NL++LR     
Sbjct: 200 GASGPVILDISRTRIH-SLPSYG------------------------LENLKKLRARSTY 234

Query: 347 ENRLSGPIASSLNLSSVEHLSLQ 369
             +    +     L ++   SL 
Sbjct: 235 NLKKLPTLE---KLVALMEASLT 254

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 51.4 bits (123), Expect = 5e-07
 Identities = 41/259 (15%), Positives = 75/259 (28%), Gaps = 60/259 (23%)

Query: 361 SSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQI-NEHSNLRFL-LLGG 418
            +   L      L  +  G       L  + +  N     I   + +    L  + +   
Sbjct: 30  RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89

Query: 419 NHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELD 478
           N+L    P+    L  L  + +S       +P                 +  K++S +  
Sbjct: 90  NNLLYINPEAFQNLPNLQYLLISNTGIK-HLP-----------------DVHKIHSLQK- 130

Query: 479 EEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTG 538
                  + +N +          +  +E+ +         F                   
Sbjct: 131 ---VLLDIQDNIN----------IHTIERNS---------FV----------GLSFESVI 158

Query: 539 LDLSCNQLTGEIPSDIGQLQAILALNLS-NNSLSGSIPESFSNLKMIESLDISYNKLTGQ 597
           L L+ N +  EI +       +  LNLS NN+L     + F        LDIS  ++   
Sbjct: 159 LWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-S 216

Query: 598 IPPQ----LTALNFLSIFN 612
           +P      L  L   S +N
Sbjct: 217 LPSYGLENLKKLRARSTYN 235

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 44.0 bits (104), Expect = 1e-04
 Identities = 21/85 (24%), Positives = 34/85 (40%), Gaps = 9/85 (10%)

Query: 539 LDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQI 598
                +++T EIPSD+   +  + L      L      +FS    +E ++IS N +   I
Sbjct: 14  FLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVI 70

Query: 599 PPQ----LTALNFLSIFNVSYNNLS 619
                  L  L+ + I     NNL 
Sbjct: 71  EADVFSNLPKLHEIRIEK--ANNLL 93

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 65.0 bits (159), Expect = 4e-12
 Identities = 31/182 (17%), Positives = 69/182 (37%), Gaps = 18/182 (9%)

Query: 2   NLERNFIGSPLITCL--KNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGM 59
                 +G      +    +  L  + +++  +   L   I    +++ L +++ +    
Sbjct: 24  AYLNGLLGQSSTANITEAQMNSLTYITLANINVT-DLTG-IEYAHNIKDLTINNIHATNY 81

Query: 60  FPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYH 119
            P+S L+N   LE L +    +    K  N    + L +L ++    + S    +     
Sbjct: 82  NPISGLSN---LERLRIM-GKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPK 137

Query: 120 LKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNN---SFSGILQLPKAKHDFLHHLDISC 176
           +  +DLS+N  + +     L+  P+L+ L ++ +    + GI   PK     L+ L    
Sbjct: 138 VNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDGVHDYRGIEDFPK-----LNQLYAFS 190

Query: 177 NN 178
             
Sbjct: 191 QT 192

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 59.6 bits (145), Expect = 2e-10
 Identities = 30/160 (18%), Positives = 63/160 (39%), Gaps = 11/160 (6%)

Query: 242 SLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKD--GLLSSTSLQVLDISNN 299
           SL  + L+N N      +       ++ L   N        +   +   ++L+ L I   
Sbjct: 45  SLTYITLANINVTD--LTGIEYAHNIKDLTINNI----HATNYNPISGLSNLERLRIMGK 98

Query: 300 MLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLN 359
            ++      +   +S L +L +S +  + ++  ++N L ++  +D+S N     I     
Sbjct: 99  DVTSDKIPNLSGLTS-LTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKT 157

Query: 360 LSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSG 399
           L  ++ L++Q + ++     E F   KL  L     T  G
Sbjct: 158 LPELKSLNIQFDGVHDYRGIEDFP--KLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 59.6 bits (145), Expect = 2e-10
 Identities = 27/157 (17%), Positives = 50/157 (31%), Gaps = 32/157 (20%)

Query: 2   NLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFP 61
            +      +     +  L+ L+ L I    +       +S LTSL  LD+SH+  +    
Sbjct: 72  TINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDS-I 128

Query: 62  LSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLK 121
           L+ +    K+  + LS       +     LP                           LK
Sbjct: 129 LTKINTLPKVNSIDLSYNGAITDIMPLKTLP--------------------------ELK 162

Query: 122 YLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGI 158
            L++  + +        + + PKL  L   + +  G 
Sbjct: 163 SLNIQFDGVHDYRG---IEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 56.5 bits (137), Expect = 3e-09
 Identities = 20/89 (22%), Positives = 43/89 (48%), Gaps = 1/89 (1%)

Query: 531 SNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDIS 590
           S ++ +  L +    +T +   ++  L ++  L++S+++   SI    + L  + S+D+S
Sbjct: 85  SGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLS 144

Query: 591 YNKLTGQIPPQLTALNFLSIFNVSYNNLS 619
           YN     I P L  L  L   N+ ++ + 
Sbjct: 145 YNGAITDIMP-LKTLPELKSLNIQFDGVH 172

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 56.1 bits (136), Expect = 3e-09
 Identities = 19/138 (13%), Positives = 48/138 (34%), Gaps = 7/138 (5%)

Query: 215 MKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFEN 274
              +  L ++  + +   + + ++G  +LE L +   +           LT L  L   +
Sbjct: 65  AHNIKDLTINNIHAT---NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISH 121

Query: 275 NNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQL 334
           +     I   + +   +  +D+S N     I   +      L+ L++  + +       +
Sbjct: 122 SAHDDSILTKINTLPKVNSIDLSYNGAITDIMP-LKTLPE-LKSLNIQFDGVHDYRG--I 177

Query: 335 NNLERLRILDISENRLSG 352
            +  +L  L      + G
Sbjct: 178 EDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 48.0 bits (115), Expect = 2e-06
 Identities = 16/82 (19%), Positives = 33/82 (40%), Gaps = 2/82 (2%)

Query: 537 TGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTG 596
             L ++    T    + I  L  +  L +    ++     + S L  +  LDIS++    
Sbjct: 69  KDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDD 126

Query: 597 QIPPQLTALNFLSIFNVSYNNL 618
            I  ++  L  ++  ++SYN  
Sbjct: 127 SILTKINTLPKVNSIDLSYNGA 148

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 16/137 (11%), Positives = 45/137 (32%), Gaps = 6/137 (4%)

Query: 315 ELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALN 374
                 + ++       +    +  L  + ++   ++  +       +++ L++      
Sbjct: 24  AYLNGLLGQSSTA---NITEAQMNSLTYITLANINVTD-LTGIEYAHNIKDLTINNIHAT 79

Query: 375 GLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQK 434
              P  +     L  L +     +      ++  ++L  L +  +     I  ++  L K
Sbjct: 80  NYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPK 137

Query: 435 LAMMDLSRNKFSGSIPP 451
           +  +DLS N     I P
Sbjct: 138 VNSIDLSYNGAITDIMP 154

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 43.4 bits (103), Expect = 7e-05
 Identities = 20/95 (21%), Positives = 41/95 (43%), Gaps = 4/95 (4%)

Query: 531 SNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDIS 590
           + +N +T + L+   +T ++ + I     I  L ++N   +       S L  +E L I 
Sbjct: 41  AQMNSLTYITLANINVT-DL-TGIEYAHNIKDLTINNIHATNY--NPISGLSNLERLRIM 96

Query: 591 YNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPDK 625
              +T    P L+ L  L++ ++S++        K
Sbjct: 97  GKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTK 131

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 43.0 bits (102), Expect = 1e-04
 Identities = 22/127 (17%), Positives = 48/127 (37%), Gaps = 6/127 (4%)

Query: 329 NVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLV 388
           NV +  +  +      + ++  +  I +   ++S+ +++L    +  L   E      + 
Sbjct: 14  NVNIPDSTFKAYLNGLLGQSSTA-NI-TEAQMNSLTYITLANINVTDLTGIEYAH--NIK 69

Query: 389 TLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGS 448
            L + +   +   P  I+  SNL  L + G  +       L  L  L ++D+S +    S
Sbjct: 70  DLTINNIHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDS 127

Query: 449 IPPCFAN 455
           I      
Sbjct: 128 ILTKINT 134

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 65.4 bits (160), Expect = 5e-12
 Identities = 35/208 (16%), Positives = 69/208 (33%), Gaps = 22/208 (10%)

Query: 242 SLELLDLSNNNF----EGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSS-TSLQVLDI 296
           S + L L   +        F     NL  +  +Y   +    +++     + + +  ++I
Sbjct: 32  STQTLKLIETHLRTIPSHAF----SNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEI 87

Query: 297 SNNMLSGHIPHWMGNFS--SELEILSMSKNHLEGNVP--VQLNNLERLRILDISENRLSG 352
            N     +I            L+ L +    L+   P   ++ + +   IL+I++N    
Sbjct: 88  RNTRNLTYIDP--DALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMT 144

Query: 353 PIASSL--NLSSV-EHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQI--NE 407
            I  +    L +    L L  N     + G  F   KL  + L  N +   I        
Sbjct: 145 SIPVNAFQGLCNETLTLKLYNNGFTS-VQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGV 203

Query: 408 HSNLRFLLLGGNHLQGPIPDQLCQLQKL 435
           +S    L +    +       L  L++L
Sbjct: 204 YSGPSLLDVSQTSVTALPSKGLEHLKEL 231

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 58.9 bits (143), Expect = 7e-10
 Identities = 41/257 (15%), Positives = 87/257 (33%), Gaps = 36/257 (14%)

Query: 22  LKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNN 81
            +   ++   +   +PS+     S + L L   +     P  + +N   +  + +S  + 
Sbjct: 13  EEDFRVTCKDIQ-RIPSL---PPSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVS-IDV 66

Query: 82  TLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRN 141
           TL       L                        +   + ++++ + + +       L+ 
Sbjct: 67  TLQQ-----LE------------------SHSFYNLSKVTHIEIRNTRNLTYIDPDALKE 103

Query: 142 NPKLEVLLLKNNSFSGILQLPKAKH-DFLHHLDISCNNFRGKLPHNMGVILQK-LMYMDI 199
            P L+ L + N        L K    D    L+I+ N +   +P N    L    + + +
Sbjct: 104 LPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKL 163

Query: 200 SKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFS-LELLDLSNNNFEGQFF 258
             N F  ++   A    +L  + L++N +   + +    G +S   LLD+S  +      
Sbjct: 164 YNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSV--TAL 220

Query: 259 SEYMNLTRLRHLYFENN 275
                L  L+ L   N 
Sbjct: 221 PSKG-LEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 50.0 bits (120), Expect = 6e-07
 Identities = 35/203 (17%), Positives = 61/203 (30%), Gaps = 34/203 (16%)

Query: 2   NLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPS-VISNLTSLEYLDLSHNNFEGMF 60
            L    + +       NL  +  + +S +     L S    NL+ + ++++ +       
Sbjct: 37  KLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYI 96

Query: 61  PLSSLANHSKLEGLLLSTRNNTLHV--KTENWLPTSQLIVLGLTKCNLNGSYPD--FLLH 116
              +L     L+ L +   N  L +         T    +L +T      S P   F   
Sbjct: 97  DPDALKELPLLKFLGIF--NTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGL 154

Query: 117 QYHLKYLDLSHNKL----VGNFPTWLLRNNPKLEVLLLKNN---------SFSGILQLPK 163
                 L L +N         F      N  KL+ + L  N         +F G+     
Sbjct: 155 CNETLTLKLYNNGFTSVQGYAF------NGTKLDAVYLNKNKYLTVIDKDAFGGVYSG-- 206

Query: 164 AKHDFLHHLDISCNNFRGKLPHN 186
                   LD+S  +    LP  
Sbjct: 207 -----PSLLDVSQTSVT-ALPSK 223

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 48.1 bits (115), Expect = 3e-06
 Identities = 33/203 (16%), Positives = 63/203 (31%), Gaps = 50/203 (24%)

Query: 119 HLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNN---------SFSGILQLPKAKHDFL 169
           ++  + +S +  +    +    N  K+  + ++N          +      LP      L
Sbjct: 56  NISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKE---LPL-----L 107

Query: 170 HHLDISCNNFRGKLPHNMGV-ILQKLMYMDISKNCFEGNIPYSA--GEMKELSLLDLSRN 226
             L I     +   P    V        ++I+ N +  +IP +A  G   E   L L  N
Sbjct: 108 KFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN 166

Query: 227 YFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLL 286
            F+                  +    F         N T+L  +Y   N +   I     
Sbjct: 167 GFT-----------------SVQGYAF---------NGTKLDAVYLNKNKYLTVIDKDAF 200

Query: 287 S--STSLQVLDISNNMLSGHIPH 307
               +   +LD+S   ++  +P 
Sbjct: 201 GGVYSGPSLLDVSQTSVT-ALPS 222

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 46.5 bits (111), Expect = 1e-05
 Identities = 46/287 (16%), Positives = 90/287 (31%), Gaps = 68/287 (23%)

Query: 289 TSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISEN 348
              +   ++   +   IP    +     + L + + HL        +NL  +  + +S +
Sbjct: 11  HQEEDFRVTCKDIQ-RIP----SLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSID 65

Query: 349 RLSGPIASSL--NLSSVEHLSLQKNALNGLIPGELFRSC-KLVTLNLRDNTFSGRIPHQI 405
                + S    NLS V H+ ++       I  +  +    L  L + +       P   
Sbjct: 66  VTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLT 124

Query: 406 NEHS--NLRFLLLGGNHLQGPIPDQLCQ--LQKLAMMDLSRNKFSGSIPPCFANVLSWRV 461
             +S      L +  N     IP    Q    +   + L  N F+ S+            
Sbjct: 125 KVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQG---------- 173

Query: 462 GSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAM 521
                 NG+KL++  L++                    ++L+ ++K A         F  
Sbjct: 174 ---YAFNGTKLDAVYLNK-------------------NKYLTVIDKDA---------FG- 201

Query: 522 KNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNN 568
                       +  + LD+S   +T  +PS    L+ +  L   N 
Sbjct: 202 ---------GVYSGPSLLDVSQTSVT-ALPSKG--LEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 35/261 (13%), Positives = 73/261 (27%), Gaps = 60/261 (22%)

Query: 360 LSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQI-NEHSNLRFLLLGG 418
             S + L L +  L  +          +  + +  +    ++        S +  + +  
Sbjct: 30  PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRN 89

Query: 419 N-HLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPEL 477
             +L    PD L +L  L  + +         P                 + +K+ S ++
Sbjct: 90  TRNLTYIDPDALKELPLLKFLGIFNTGLK-MFP-----------------DLTKVYSTDI 131

Query: 478 DEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVT 537
              +E     N             ++++   A         F              N   
Sbjct: 132 FFILEI--TDNPY-----------MTSIPVNA---------FQ----------GLCNETL 159

Query: 538 GLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPE-SFSNLK-MIESLDISYNKLT 595
            L L  N  T  +         + A+ L+ N     I + +F  +      LD+S   +T
Sbjct: 160 TLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218

Query: 596 GQIPP----QLTALNFLSIFN 612
             +P      L  L   + + 
Sbjct: 219 -ALPSKGLEHLKELIARNTWT 238

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 64.7 bits (158), Expect = 3e-11
 Identities = 59/377 (15%), Positives = 111/377 (29%), Gaps = 82/377 (21%)

Query: 16  LKNLTRLKILDISSNQLNGS-----LPSVISNLTSLEYLDLSHNNF--EGMFPLSSL--A 66
                 +  LD+S N L        + +  +   S+  L+LS N+   +    L  +  A
Sbjct: 18  TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAA 77

Query: 67  NHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLS 126
             + +  L LS   N L  K      +S  +V  L                  +  LDL 
Sbjct: 78  IPANVTSLNLS--GNFLSYK------SSDELVKTLAAIPF------------TITVLDLG 117

Query: 127 HNKL----VGNFPTWLLRNNPKLEVLLLKNNSFS-----GILQLPKAKHDFLHHLDISCN 177
            N         F          +  L L+ N         ++Q+  A    ++ L++  N
Sbjct: 118 WNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGN 177

Query: 178 NFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFS----GGLS 233
           N       +      +L     S                 ++ LDLS N         L+
Sbjct: 178 NLA-----SKNC--AELAKFLASIPAS-------------VTSLDLSANLLGLKSYAELA 217

Query: 234 QSVVTGCFSLELLDLSNNNFEGQFFSEY----MNLTRLRHLYFENNNFSGK-------IK 282
               +    +  L+L  N   G           +L  L+ +Y + +            + 
Sbjct: 218 YIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALG 277

Query: 283 DGLLSSTSLQVLDISNNMLSG----HIPHWMGNFSSELEILSMSKNHL-----EGNVPVQ 333
               +   + ++D +   +       I + +   S + ++ S+    L            
Sbjct: 278 AAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIED 337

Query: 334 LNNLERLRILDISENRL 350
           LN  + LR    +   L
Sbjct: 338 LNIPDELRESIQTCKPL 354

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 58.6 bits (142), Expect = 3e-09
 Identities = 55/379 (14%), Positives = 103/379 (27%), Gaps = 83/379 (21%)

Query: 38  SVISNLTSLEYLDLSHNNF--EGMFPLSS--LANHSKLEGLLLSTRNNTLHVKTENWLPT 93
              S    +  LDLS NN        L        + +  L LS   N+L  K       
Sbjct: 16  EFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLS--GNSLGFK------N 67

Query: 94  SQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKL----VGNFPTWLLRNNPKLEVLL 149
           S  +V  L                 ++  L+LS N L           L      + VL 
Sbjct: 68  SDELVQILAAIPA------------NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLD 115

Query: 150 LKNNSFS-----GILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCF 204
           L  N FS        Q        +  L++  N+   K          +L+ +  +    
Sbjct: 116 LGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIK-----SS--DELIQILAAIPAN 168

Query: 205 EGNIPYSAGEMKELSLLDLSRNYFS----GGLSQSVVTGCFSLELLDLSNNNFE---GQF 257
                        ++ L+L  N  +      L++ + +   S+  LDLS N         
Sbjct: 169 -------------VNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAE 215

Query: 258 FSEYM--NLTRLRHLYFENNNFSGK----IKDGLLSSTSLQVLDISNNMLSGHIPHWMGN 311
            +         +  L    N   G     +K    S   LQ + +  +++          
Sbjct: 216 LAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKA 275

Query: 312 FSSE------LEILSMSKNHLEGNVPVQL--------NNLERLRILD---ISENRLSGPI 354
             +       + ++  +   +  +  + +           +   +L+   I   +    I
Sbjct: 276 LGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNI 335

Query: 355 ASSLNLSSVEHLSLQKNAL 373
                   +         L
Sbjct: 336 EDLNIPDELRESIQTCKPL 354

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 56.6 bits (137), Expect = 1e-08
 Identities = 53/286 (18%), Positives = 97/286 (33%), Gaps = 47/286 (16%)

Query: 218 LSLLDLSRNYFSG----GLSQSVVTGCFSLELLDLSNNNFE---GQFFSEYM--NLTRLR 268
           ++ LDLS N         L Q+      S+  L+LS N+          + +      + 
Sbjct: 24  VTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVT 83

Query: 269 HLYFENNNFSGK----IKDGLLSS-TSLQVLDISNNMLSG----HIPHWMGNFSSELEIL 319
            L    N  S K    +   L +   ++ VLD+  N  S            N  + +  L
Sbjct: 84  SLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSL 143

Query: 320 SMSKNHLEGNVPVQL------NNLERLRILDISENRLSGP----IASSL--NLSSVEHLS 367
           ++  N L G                 +  L++  N L+      +A  L    +SV  L 
Sbjct: 144 NLRGNDL-GIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLD 202

Query: 368 LQKNALN-----GLIPGELFRSCKLVTLNLRDNTFSG----RIPHQINEHSNLRFLLLGG 418
           L  N L       L          +V+LNL  N   G     +    +   +L+ + L  
Sbjct: 203 LSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDY 262

Query: 419 NHLQGPIPDQ-------LCQLQKLAMMDLSRNKFSGSIPPCFANVL 457
           + ++    +Q          +QK+ ++D +  +   S     +N++
Sbjct: 263 DIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLI 308

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 63.2 bits (154), Expect = 6e-11
 Identities = 46/179 (25%), Positives = 69/179 (38%), Gaps = 13/179 (7%)

Query: 221 LDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGK 280
           L LS N      S + +     L  L+L               L  L  L   +N     
Sbjct: 36  LHLSENLLYT-FSLATLMPYTRLTQLNLDRAEL--TKLQVDGTLPVLGTLDLSHNQLQ-S 91

Query: 281 IKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSS--ELEILSMSKNHLEGNVPVQL-NNL 337
           +     +  +L VLD+S N L+  +P   G      EL+ L +  N L+  +P  L    
Sbjct: 92  LPLLGQTLPALTVLDVSFNRLT-SLPL--GALRGLGELQELYLKGNELK-TLPPGLLTPT 147

Query: 338 ERLRILDISENRLSG-PIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDN 395
            +L  L ++ N L+  P      L +++ L LQ+N+L   IP   F S  L    L  N
Sbjct: 148 PKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 59.7 bits (145), Expect = 7e-10
 Identities = 49/182 (26%), Positives = 74/182 (40%), Gaps = 10/182 (5%)

Query: 265 TRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKN 324
                L+   N         L+  T L  L++    L+  +   +      L  L +S N
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQ--VDGTLPVLGTLDLSHN 87

Query: 325 HLEGNVPVQLNNLERLRILDISENRLSG-PIASSLNLSSVEHLSLQKNALNGLIPGELFR 383
            L+ ++P+    L  L +LD+S NRL+  P+ +   L  ++ L L+ N L  L PG L  
Sbjct: 88  QLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPG-LLT 145

Query: 384 S-CKLVTLNLRDNTFSGRIPHQINEH-SNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLS 441
              KL  L+L +N  +  +P  +     NL  LLL  N L   IP        L    L 
Sbjct: 146 PTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLH 203

Query: 442 RN 443
            N
Sbjct: 204 GN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 59.0 bits (143), Expect = 1e-09
 Identities = 52/182 (28%), Positives = 67/182 (36%), Gaps = 12/182 (6%)

Query: 242 SLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNML 301
              +L LS N       +  M  TRL  L  +    +    DG L    L  LD+S+N L
Sbjct: 32  DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTL--PVLGTLDLSHNQL 89

Query: 302 SGHIPHWMGNFS--SELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSL- 358
              +P           L +L +S N L       L  L  L+ L +  N L       L 
Sbjct: 90  Q-SLP---LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLT 145

Query: 359 NLSSVEHLSLQKNALNGLIPGELFRS-CKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLG 417
               +E LSL  N L  L P  L      L TL L++N+    IP        L F  L 
Sbjct: 146 PTPKLEKLSLANNNLTEL-PAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLH 203

Query: 418 GN 419
           GN
Sbjct: 204 GN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 48.6 bits (116), Expect = 3e-06
 Identities = 52/184 (28%), Positives = 66/184 (35%), Gaps = 30/184 (16%)

Query: 2   NLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFP 61
           +L  N + +  +  L   TRL  L++   +L   L  V   L  L  LDLSHN       
Sbjct: 37  HLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQ-VDGTLPVLGTLDLSHNQ------ 88

Query: 62  LSSL----ANHSKLEGLLLSTRNNTLHVKTENWLPT------SQLIVLGLTKCNLNGSYP 111
           L SL         L  L +S   N L       LP        +L  L L    L    P
Sbjct: 89  LQSLPLLGQTLPALTVLDVS--FNRLTS-----LPLGALRGLGELQELYLKGNELKTLPP 141

Query: 112 DFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFS----GILQLPKAKHD 167
             L     L+ L L++N L    P  LL     L+ LLL+ NS      G          
Sbjct: 142 GLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFA 200

Query: 168 FLHH 171
           FLH 
Sbjct: 201 FLHG 204

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 47.4 bits (113), Expect = 8e-06
 Identities = 29/93 (31%), Positives = 44/93 (47%), Gaps = 11/93 (11%)

Query: 531 SNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDIS 590
               R+T L+L   +LT ++  D G L  +  L+LS+N L  S+P     L  +  LD+S
Sbjct: 52  MPYTRLTQLNLDRAELT-KLQVD-GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVS 108

Query: 591 YNKLTGQIPP----QLTALNFLSIFNVSYNNLS 619
           +N+LT  +P      L  L  L +     N L 
Sbjct: 109 FNRLT-SLPLGALRGLGELQELYL---KGNELK 137

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 47.0 bits (112), Expect = 1e-05
 Identities = 50/212 (23%), Positives = 72/212 (33%), Gaps = 42/212 (19%)

Query: 20  TRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTR 79
               IL +S N L     + +   T L  L+L       +    +L     L  L LS  
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPV---LGTLDLS-- 85

Query: 80  NNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLL 139
                    N L +  L+   L                  L  LD+S N+L  + P   L
Sbjct: 86  --------HNQLQSLPLLGQTLPA----------------LTVLDVSFNRLT-SLPLGAL 120

Query: 140 RNNPKLEVLLLKNNSFS----GILQ-LPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKL 194
           R   +L+ L LK N       G+L   PK     L  L ++ NN   +LP  +   L+ L
Sbjct: 121 RGLGELQELYLKGNELKTLPPGLLTPTPK-----LEKLSLANNNLT-ELPAGLLNGLENL 174

Query: 195 MYMDISKNCFEGNIPYSAGEMKELSLLDLSRN 226
             + + +N     IP        L    L  N
Sbjct: 175 DTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 42.0 bits (99), Expect = 4e-04
 Identities = 39/141 (27%), Positives = 49/141 (34%), Gaps = 38/141 (26%)

Query: 18  NLTRLKILDISSNQLNGSLPS-VISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLL 76
            L  L +LD+S N+L  SLP   +  L  L+ L L  N  +   P   L    KLE L L
Sbjct: 98  TLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSL 155

Query: 77  STRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKL----VG 132
           +  NN L       LP    ++ GL                  L  L L  N L     G
Sbjct: 156 A--NNNLTE-----LPAG--LLNGLEN----------------LDTLLLQENSLYTIPKG 190

Query: 133 NFPTWLLRNNPKLEVLLLKNN 153
            F       +  L    L  N
Sbjct: 191 FF------GSHLLPFAFLHGN 205

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 60.8 bits (148), Expect = 3e-10
 Identities = 41/210 (19%), Positives = 79/210 (37%), Gaps = 21/210 (10%)

Query: 191 LQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSN 250
             + +  ++ K      +  +  E+  +  +  + +      S   +    ++  L L+ 
Sbjct: 23  FAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIK---SVQGIQYLPNVTKLFLNG 77

Query: 251 NNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKD--GLLSSTSLQVLDISNNMLSGHIPHW 308
           N           NL  L  L+ + N    K+KD   L     L+ L + +N +S  I   
Sbjct: 78  NKLTD--IKPLANLKNLGWLFLDEN----KVKDLSSLKDLKKLKSLSLEHNGIS-DINGL 130

Query: 309 MGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSL 368
           +     +LE L +  N +       L+ L +L  L + +N++S  I     L+ +++L L
Sbjct: 131 VHL--PQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISD-IVPLAGLTKLQNLYL 185

Query: 369 QKNALNGLIPGELFRSCKLVTLNLRDNTFS 398
            KN ++ L    L     L  L L      
Sbjct: 186 SKNHISDLRA--LAGLKNLDVLELFSQECL 213

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 60.8 bits (148), Expect = 4e-10
 Identities = 43/292 (14%), Positives = 78/292 (26%), Gaps = 75/292 (25%)

Query: 13  ITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLE 72
           I            ++    +        + L S++ +  ++++ + +  +  L N     
Sbjct: 17  IFSDDAFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIKSVQGIQYLPN----- 69

Query: 73  GLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVG 132
                                                          +  L L+ NKL  
Sbjct: 70  -----------------------------------------------VTKLFLNGNKLTD 82

Query: 133 NFPTWLLRNNPKLEVLLLKNN---SFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGV 189
             P   L N   L  L L  N     S +  L K     L  L +  N     +   +  
Sbjct: 83  IKP---LANLKNLGWLFLDENKVKDLSSLKDLKK-----LKSLSLEHNGIS-DINGLVH- 132

Query: 190 ILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLS 249
            L +L  + +  N    +I      + +L  L L  N  S       + G   L+ L LS
Sbjct: 133 -LPQLESLYLGNNKIT-DIT-VLSRLTKLDTLSLEDNQIS---DIVPLAGLTKLQNLYLS 186

Query: 250 NNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNML 301
            N+           L  L  L   +     K  +   +      +  ++  L
Sbjct: 187 KNHISD--LRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 236

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 56.6 bits (137), Expect = 7e-09
 Identities = 42/180 (23%), Positives = 75/180 (41%), Gaps = 18/180 (10%)

Query: 2   NLERNFIGSPLIT---CLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEG 58
              ++ +    +T       L  +  +  +++ +  S+   I  L ++  L L+ N    
Sbjct: 25  ETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIK-SV-QGIQYLPNVTKLFLNGNKLTD 82

Query: 59  MFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQY 118
           + PL++L N   L  L L   N    + +   L   +L  L L    +  S  + L+H  
Sbjct: 83  IKPLANLKN---LGWLFLD-ENKVKDLSSLKDLK--KLKSLSLEHNGI--SDINGLVHLP 134

Query: 119 HLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNN 178
            L+ L L +NK+        L    KL+ L L++N  S I+ L  A    L +L +S N+
Sbjct: 135 QLESLYLGNNKITDITV---LSRLTKLDTLSLEDNQISDIVPL--AGLTKLQNLYLSKNH 189

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 51.6 bits (124), Expect = 3e-07
 Identities = 45/261 (17%), Positives = 92/261 (35%), Gaps = 46/261 (17%)

Query: 139 LRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMD 198
                +     LK  S +  +   +     +  +  + ++ +                  
Sbjct: 20  DDAFAETIKDNLKKKSVTDAVTQNELNS--IDQIIANNSDIK-----------------S 60

Query: 199 ISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFF 258
           +        I Y    +  ++ L L+ N  +       +    +L  L L  N  +    
Sbjct: 61  VQ------GIQY----LPNVTKLFLNGNKLT---DIKPLANLKNLGWLFLDENKVKD--L 105

Query: 259 SEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFS--SEL 316
           S   +L +L+ L  E+N  S  I +GL+    L+ L + NN ++      +   S  ++L
Sbjct: 106 SSLKDLKKLKSLSLEHNGIS-DI-NGLVHLPQLESLYLGNNKITD-----ITVLSRLTKL 158

Query: 317 EILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGL 376
           + LS+  N +   VP  L  L +L+ L +S+N +S  + +   L +++ L L        
Sbjct: 159 DTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LRALAGLKNLDVLELFSQECLNK 215

Query: 377 IPGELFRSCKLVTLNLRDNTF 397
                       T+   D + 
Sbjct: 216 PINHQSNLVVPNTVKNTDGSL 236

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 59.9 bits (145), Expect = 1e-09
 Identities = 41/161 (25%), Positives = 63/161 (39%), Gaps = 10/161 (6%)

Query: 288 STSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQ-LNNLERLRILDIS 346
            +   +LD+S+N LS     W     + L  L +S NHL   +  +    +  LR LD+S
Sbjct: 38  PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLS 96

Query: 347 ENRLSG-PIASSLNLSSVEHLSLQKNALNGLIPGELFRSC-KLVTLNLRDNTFSGRIPHQ 404
            N L         +L ++E L L  N +  ++    F    +L  L L  N  S R P +
Sbjct: 97  SNHLHTLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQIS-RFPVE 154

Query: 405 INEH----SNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLS 441
           + +       L  L L  N L+      L +L       L 
Sbjct: 155 LIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLY 195

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 57.5 bits (139), Expect = 7e-09
 Identities = 45/190 (23%), Positives = 70/190 (36%), Gaps = 42/190 (22%)

Query: 2   NLERNFIGS-PLITCLKNLTRLKILDISSNQLNGSLPS-VISNLTSLEYLDLSHNNFEGM 59
           +L  N +           LT L  L +S N LN  + S     + +L YLDLS N+    
Sbjct: 45  DLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHLH-T 102

Query: 60  FPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYH 119
                 ++   LE LLL   NN + V     +  +      +                  
Sbjct: 103 LDEFLFSDLQALEVLLLY--NNHIVV-----VDRNAF--EDMA----------------Q 137

Query: 120 LKYLDLSHNKLVGNFPTWLLRNN---PKLEVLLLKNNSFSGILQ-----LPKAKHDFLH- 170
           L+ L LS N++   FP  L+++    PKL +L L +N    +       LP    + L+ 
Sbjct: 138 LQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYL 196

Query: 171 ---HLDISCN 177
               L+  C 
Sbjct: 197 HNNPLECDCK 206

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 56.0 bits (135), Expect = 2e-08
 Identities = 45/182 (24%), Positives = 72/182 (39%), Gaps = 21/182 (11%)

Query: 28  SSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLH-VK 86
           S  QL  ++P  +   +    LDLSHNN   +    +    + L  LLLS  +N L+ + 
Sbjct: 26  SKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLS--HNHLNFIS 80

Query: 87  TENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLE 146
           +E ++P   L  L L+  +L+            L+ L L +N +V         +  +L+
Sbjct: 81  SEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQ 139

Query: 147 VLLLKNN--------SFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMD 198
            L L  N              +LPK     L  LD+S N  + KLP      L   +   
Sbjct: 140 KLYLSQNQISRFPVELIKDGNKLPK-----LMLLDLSSNKLK-KLPLTDLQKLPAWVKNG 193

Query: 199 IS 200
           + 
Sbjct: 194 LY 195

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 55.2 bits (133), Expect = 4e-08
 Identities = 39/193 (20%), Positives = 71/193 (36%), Gaps = 42/193 (21%)

Query: 242 SLELLDLSNNNF----EGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSS-TSLQVLDI 296
              LLDLS+NN          +    LT L  L   +N+ +  I         +L+ LD+
Sbjct: 40  YTALLDLSHNNLSRLRAEWTPT---RLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDL 95

Query: 297 SNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSG-PIA 355
           S+N L                        L+  +    ++L+ L +L +  N +      
Sbjct: 96  SSNHLH----------------------TLDEFL---FSDLQALEVLLLYNNHIVVVDRN 130

Query: 356 SSLNLSSVEHLSLQKNALNGLIPGELFRSC----KLVTLNLRDNTFSGRIPHQINEHSNL 411
           +  +++ ++ L L +N ++   P EL +      KL+ L+L  N         + +    
Sbjct: 131 AFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAW 189

Query: 412 --RFLLLGGNHLQ 422
               L L  N L+
Sbjct: 190 VKNGLYLHNNPLE 202

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 53.3 bits (128), Expect = 1e-07
 Identities = 44/191 (23%), Positives = 67/191 (35%), Gaps = 41/191 (21%)

Query: 119 HLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGI-----LQLPKAKHDFLHHLD 173
           +   LDLSHN L      W       L  LLL +N  + I     + +P      L +LD
Sbjct: 40  YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPN-----LRYLD 94

Query: 174 ISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLS 233
           +S N+    L   +   LQ L  + +  N                 ++ + RN F   ++
Sbjct: 95  LSSNHLH-TLDEFLFSDLQALEVLLLYNN----------------HIVVVDRNAFE-DMA 136

Query: 234 QSVVTGCFSLELLDLSNNN---FEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGL--LSS 288
           Q        L+ L LS N    F  +   +   L +L  L   +N         L  L +
Sbjct: 137 Q--------LQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPA 188

Query: 289 TSLQVLDISNN 299
                L + NN
Sbjct: 189 WVKNGLYLHNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 48.7 bits (116), Expect = 4e-06
 Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 9/87 (10%)

Query: 539 LDLSCNQLTGEIPSDI-GQLQAILALNLSNNSLSGSIPE-SFSNLKMIESLDISYNKLTG 596
           LDLS N L   +   +   LQA+  L L NN +   +   +F ++  ++ L +S N+++ 
Sbjct: 93  LDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQIS- 149

Query: 597 QIPPQ----LTALNFLSIFNVSYNNLS 619
           + P +       L  L + ++S N L 
Sbjct: 150 RFPVELIKDGNKLPKLMLLDLSSNKLK 176

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 44.8 bits (106), Expect = 6e-05
 Identities = 31/116 (26%), Positives = 47/116 (40%), Gaps = 7/116 (6%)

Query: 340 LRILDISENRLS--GPIASSLNLSSVEHLSLQKNALNGLIPGELFRSC-KLVTLNLRDNT 396
             +LD+S N LS      +   L+++  L L  N LN  I  E F     L  L+L  N 
Sbjct: 41  TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNH 99

Query: 397 FSGRIPHQINEH-SNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPP 451
               +   +      L  LLL  NH+     +    + +L  + LS+N+ S   P 
Sbjct: 100 LH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPV 153

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 44.4 bits (105), Expect = 8e-05
 Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 13/91 (14%)

Query: 536 VTGLDLSCNQLTGEIPSDI--GQLQAILALNLSNNSLSGSIPE-SFSNLKMIESLDISYN 592
              LDLS N L+  + ++    +L  + +L LS+N L+  I   +F  +  +  LD+S N
Sbjct: 41  TALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSN 98

Query: 593 KLTGQIPPQ----LTALNFLSIFNVSYNNLS 619
            L   +       L AL  L +     N++ 
Sbjct: 99  HLH-TLDEFLFSDLQALEVLLL---YNNHIV 125

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 42.5 bits (100), Expect = 4e-04
 Identities = 26/106 (24%), Positives = 35/106 (33%), Gaps = 12/106 (11%)

Query: 356 SSLNLSSV--------EHLSLQKNALNGLIPGELFRS-CKLVTLNLRDNTFSGRIPHQIN 406
           S   L +V          L L  N L+ L           L +L L  N  +  I  +  
Sbjct: 26  SKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAF 84

Query: 407 EH-SNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPP 451
               NLR+L L  NHL          LQ L ++ L  N     +  
Sbjct: 85  VPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIV-VVDR 129

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 56.1 bits (136), Expect = 1e-08
 Identities = 42/190 (22%), Positives = 75/190 (39%), Gaps = 19/190 (10%)

Query: 217 ELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNF----EGQFFSEYMNLTRLRHLYF 272
           EL +LDLSR      +          L  L L+ N       G F      L+ L+ L  
Sbjct: 53  ELQVLDLSRCEIQT-IEDGAYQSLSHLSTLILTGNPIQSLALGAF----SGLSSLQKLVA 107

Query: 273 ENNNFSGKIKDGLLSS-TSLQVLDISNNMLSGHIPHWMGNFSS--ELEILSMSKN---HL 326
              N +  +++  +    +L+ L++++N++          FS+   LE L +S N    +
Sbjct: 108 VETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLP--EYFSNLTNLEHLDLSSNKIQSI 164

Query: 327 EGNVPVQLNNLERLRI-LDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSC 385
                  L+ +  L + LD+S N ++     +     ++ L+L  N L  +  G   R  
Sbjct: 165 YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLT 224

Query: 386 KLVTLNLRDN 395
            L  + L  N
Sbjct: 225 SLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 55.7 bits (135), Expect = 1e-08
 Identities = 50/264 (18%), Positives = 86/264 (32%), Gaps = 65/264 (24%)

Query: 20  TRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTR 79
              K LD+S N L         +   L+ LDLS    +      +  + S L  L+L+  
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILT-- 84

Query: 80  NNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLL 139
            N +       L        GL+                 L+ L      L  +   + +
Sbjct: 85  GNPIQS-----LALG--AFSGLSS----------------LQKLVAVETNLA-SLENFPI 120

Query: 140 RNNPKLEVLLLKNNSFSGILQLPKAKHDF-----LHHLDISCNNFRGKLPHNMGVILQKL 194
            +   L+ L + +N    I      ++ F     L HLD+S N  +  +      +L ++
Sbjct: 121 GHLKTLKELNVAHNL---IQSFKLPEY-FSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQM 175

Query: 195 MYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCF---SLELLDLSNN 251
             +++S                    LDLS N         +  G F    L+ L L  N
Sbjct: 176 PLLNLS--------------------LDLSLNPM-----NFIQPGAFKEIRLKELALDTN 210

Query: 252 NFEGQFFSEYMNLTRLRHLYFENN 275
             +      +  LT L+ ++   N
Sbjct: 211 QLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 53.8 bits (130), Expect = 5e-08
 Identities = 43/173 (24%), Positives = 73/173 (42%), Gaps = 16/173 (9%)

Query: 289 TSLQVLDISNNMLSGHIPHWMGNFSS--ELEILSMSKNHLEGNVPVQL-NNLERLRILDI 345
            S + LD+S N L  H+     +F S  EL++L +S+  ++  +      +L  L  L +
Sbjct: 28  FSTKNLDLSFNPLR-HLGS--YSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLIL 83

Query: 346 SENRLSG-PIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQ 404
           + N +    + +   LSS++ L   +  L  L    +     L  LN+  N        +
Sbjct: 84  TGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE 143

Query: 405 INEH-SNLRFLLLGGNHLQGPIP----DQLCQLQKLAM-MDLSRNKFSGSIPP 451
              + +NL  L L  N +Q  I       L Q+  L + +DLS N  +  I P
Sbjct: 144 YFSNLTNLEHLDLSSNKIQS-IYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQP 194

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 51.5 bits (124), Expect = 3e-07
 Identities = 33/144 (22%), Positives = 54/144 (37%), Gaps = 5/144 (3%)

Query: 311 NFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSG-PIASSLNLSSVEHLSLQ 369
           N     + L +S N L         +   L++LD+S   +      +  +LS +  L L 
Sbjct: 25  NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT 84

Query: 370 KNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEH-SNLRFLLLGGNHLQG-PIPD 427
            N +  L  G       L  L   +   +  + +    H   L+ L +  N +Q   +P+
Sbjct: 85  GNPIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPE 143

Query: 428 QLCQLQKLAMMDLSRNKFSGSIPP 451
               L  L  +DLS NK   SI  
Sbjct: 144 YFSNLTNLEHLDLSSNKIQ-SIYC 166

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 50.7 bits (122), Expect = 6e-07
 Identities = 40/162 (24%), Positives = 63/162 (38%), Gaps = 19/162 (11%)

Query: 2   NLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPS-VISNLTSLEYLDLSHNN----- 55
            L  N I S  +     L+ L+ L      L  SL +  I +L +L+ L+++HN      
Sbjct: 82  ILTGNPIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFK 140

Query: 56  FEGMFPLSSLANHSKLEGLLLSTRNN--TLHVKTENWLP--TSQLIVLGLTKCNLNGSYP 111
               F  S+L N   LE L LS  N   +++      L       + L L+   +N    
Sbjct: 141 LPEYF--SNLTN---LEHLDLS-SNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQ 193

Query: 112 DFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNN 153
                +  LK L L  N+L  + P  +      L+ + L  N
Sbjct: 194 PGAFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 50.7 bits (122), Expect = 6e-07
 Identities = 42/197 (21%), Positives = 67/197 (34%), Gaps = 18/197 (9%)

Query: 120 LKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGI-----LQLPKAKHDFLHHLDI 174
            K LDLS N L  +  ++   + P+L+VL L       I       L       L  L +
Sbjct: 30  TKNLDLSFNPL-RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSH-----LSTLIL 83

Query: 175 SCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQ 234
           + N  +  L       L  L  +   +        +  G +K L  L+++ N        
Sbjct: 84  TGNPIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLP 142

Query: 235 SVVTGCFSLELLDLSNNNF---EGQFFSEYMNLTRLR-HLYFENNNFSGKIKDGLLSSTS 290
              +   +LE LDLS+N               +  L   L    N  +  I+ G      
Sbjct: 143 EYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIR 201

Query: 291 LQVLDISNNMLSGHIPH 307
           L+ L +  N L   +P 
Sbjct: 202 LKELALDTNQLK-SVPD 217

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 46.5 bits (111), Expect = 1e-05
 Identities = 41/202 (20%), Positives = 74/202 (36%), Gaps = 39/202 (19%)

Query: 18  NLTRLKILDISSNQLNGSLPS-VISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLL 76
           +L+ L  L ++ N +  SL     S L+SL+ L     N         + +   L+ L +
Sbjct: 74  SLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNV 131

Query: 77  STRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPT 136
           +  +N +                           P++  +  +L++LDLS NK+  +   
Sbjct: 132 A--HNLIQS-----FKL-----------------PEYFSNLTNLEHLDLSSNKIQ-SIYC 166

Query: 137 WLLRNNPKLEV----LLLKNNSFSGILQLPKAKHDF-LHHLDISCNNFRGKLPHNMGVIL 191
             LR   ++ +    L L  N  + I   P A  +  L  L +  N  +  +P  +   L
Sbjct: 167 TDLRVLHQMPLLNLSLDLSLNPMNFI--QPGAFKEIRLKELALDTNQLK-SVPDGIFDRL 223

Query: 192 QKLMYMDISKN---CFEGNIPY 210
             L  + +  N   C    I Y
Sbjct: 224 TSLQKIWLHTNPWDCSCPRIDY 245

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 43.4 bits (103), Expect = 1e-04
 Identities = 43/260 (16%), Positives = 77/260 (29%), Gaps = 62/260 (23%)

Query: 340 LRILDISENRLSGPIASSL-NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFS 398
            + LD+S N L    + S  +   ++ L L +  +  +  G       L TL L  N   
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89

Query: 399 GRIPHQINEH-SNLRFLLLGGNHLQGPIP----DQLCQLQKLAMMDLSRNKFSGSIPPCF 453
             +        S+L+ L+    +L   +       L  L++L   +++ N    S     
Sbjct: 90  -SLALGAFSGLSSLQKLVAVETNLAS-LENFPIGHLKTLKEL---NVAHNLIQ-SFK--- 140

Query: 454 ANVLSWRVGSDDVLNG-SKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAID 512
                      +  +  + L    LD       L +N+  +      R L  +       
Sbjct: 141 ---------LPEYFSNLTNLE--HLD-------LSSNKIQSIYCTDLRVLHQMP------ 176

Query: 513 ERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSG 572
                                     LDLS N +   I     +   +  L L  N L  
Sbjct: 177 ---------------------LLNLSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQLKS 214

Query: 573 SIPESFSNLKMIESLDISYN 592
                F  L  ++ + +  N
Sbjct: 215 VPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 18/88 (20%), Positives = 34/88 (38%), Gaps = 10/88 (11%)

Query: 537 TGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPES-FSNLKMIESLDISYNKLT 595
             LDLS N L             +  L+LS   +  +I +  + +L  + +L ++ N + 
Sbjct: 31  KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQ 89

Query: 596 GQIPP----QLTALNFLSIFNVSYNNLS 619
             +       L++L  L        NL+
Sbjct: 90  -SLALGAFSGLSSLQKLVA---VETNLA 113

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 41.1 bits (97), Expect = 8e-04
 Identities = 20/88 (22%), Positives = 32/88 (36%), Gaps = 10/88 (11%)

Query: 537 TGLDLSCNQLTGEIPSDI-GQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLT 595
             LDLS  ++   I       L  +  L L+ N +      +FS L  ++ L      L 
Sbjct: 55  QVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 113

Query: 596 GQIPP----QLTALNFLSIFNVSYNNLS 619
             +       L  L  L   NV++N + 
Sbjct: 114 -SLENFPIGHLKTLKEL---NVAHNLIQ 137

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 57.5 bits (138), Expect = 1e-08
 Identities = 42/209 (20%), Positives = 65/209 (31%), Gaps = 16/209 (7%)

Query: 242 SLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISN--- 298
            L   +LS         SE  +   L+ L  EN      I   + +   L     +    
Sbjct: 350 QLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYF 408

Query: 299 NMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSL 358
           + L    P            L   ++       V       +R+L ++   L+  +    
Sbjct: 409 STLKAVDPMR-------AAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCHLE 460

Query: 359 NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGG 418
            L  V HL L  N L   +P  L     L  L   DN     +   +     L+ LLL  
Sbjct: 461 QLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALE-NVDG-VANLPRLQELLLCN 517

Query: 419 NHLQG-PIPDQLCQLQKLAMMDLSRNKFS 446
           N LQ       L    +L +++L  N   
Sbjct: 518 NRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 53.2 bits (127), Expect = 2e-07
 Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 5/81 (6%)

Query: 539 LDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQI 598
           L L+   LT  +   + QL  +  L+LS+N L  ++P + + L+ +E L  S N L   +
Sbjct: 446 LHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NV 501

Query: 599 PPQLTALNFLSIFNVSYNNLS 619
              +  L  L    +  N L 
Sbjct: 502 DG-VANLPRLQELLLCNNRLQ 521

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 50.1 bits (119), Expect = 2e-06
 Identities = 23/101 (22%), Positives = 43/101 (42%), Gaps = 7/101 (6%)

Query: 2   NLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFP 61
           +L  N + + L   L  L  L++L  S N L  ++   ++NL  L+ L L +N  +    
Sbjct: 469 DLSHNRLRA-LPPALAALRCLEVLQASDNALE-NVDG-VANLPRLQELLLCNNRLQQSAA 525

Query: 62  LSSLANHSKLEGLLLS----TRNNTLHVKTENWLPTSQLIV 98
           +  L +  +L  L L      +   +  +    LP+   I+
Sbjct: 526 IQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 47.4 bits (112), Expect = 1e-05
 Identities = 32/153 (20%), Positives = 57/153 (37%), Gaps = 31/153 (20%)

Query: 1   MNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMF 60
           ++  R+               +++L ++   L  ++   +  L  + +LDLSHN    + 
Sbjct: 422 LDDLRSKFLLENSVLKMEYADVRVLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRAL- 478

Query: 61  PLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHL 120
              +LA    LE L  S  +N L    EN    + L                       L
Sbjct: 479 -PPALAALRCLEVLQAS--DNAL----ENVDGVANL---------------------PRL 510

Query: 121 KYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNN 153
           + L L +N+L  +     L + P+L +L L+ N
Sbjct: 511 QELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGN 543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 45.5 bits (107), Expect = 5e-05
 Identities = 43/240 (17%), Positives = 72/240 (30%), Gaps = 37/240 (15%)

Query: 12  LITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKL 71
                    +L   ++S  +    L S + +   L+ L+  +        L+ +     L
Sbjct: 341 WCRDSATDEQLFRCELSVEKST-VLQSELESCKELQELEPENK----WCLLTIILLMRAL 395

Query: 72  EGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLV 131
           + LL            +   P     +  L    L        +    ++ L L+H  L 
Sbjct: 396 DPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLE-NSVLKMEYADVRVLHLAHKDLT 454

Query: 132 GNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVIL 191
                                     + QL       + HLD+S N  R  LP  +   L
Sbjct: 455 ----------------------VLCHLEQLL-----LVTHLDLSHNRLR-ALPPALAA-L 485

Query: 192 QKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNN 251
           + L  +  S N  E N+      +  L  L L  N      +   +  C  L LL+L  N
Sbjct: 486 RCLEVLQASDNALE-NVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGN 543

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 54.3 bits (131), Expect = 4e-08
 Identities = 39/184 (21%), Positives = 68/184 (36%), Gaps = 20/184 (10%)

Query: 215 MKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFEN 274
           +      +L +   +             ++  +  N+N +    +     T L+ L+  +
Sbjct: 18  LANAVKQNLGKQSVT---DLVSQKELSGVQNFNGDNSNIQS--LAGMQFFTNLKELHLSH 72

Query: 275 NNFSGKIKD--GLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPV 332
           N    +I D   L   T L+ L ++ N     + +  G  S+ L  L +  N L      
Sbjct: 73  N----QISDLSPLKDLTKLEELSVNRN----RLKNLNGIPSACLSRLFLDNNELRDTDS- 123

Query: 333 QLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNL 392
            L +L+ L IL I  N+L   I     LS +E L L  N +       L R  K+  ++L
Sbjct: 124 -LIHLKNLEILSIRNNKLKS-IVMLGFLSKLEVLDLHGNEITNTGG--LTRLKKVNWIDL 179

Query: 393 RDNT 396
               
Sbjct: 180 TGQK 183

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 53.1 bits (128), Expect = 8e-08
 Identities = 33/190 (17%), Positives = 66/190 (34%), Gaps = 19/190 (10%)

Query: 13  ITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLE 72
           +     L      ++    +   +      L+ ++  +  ++N + +  +    N   L+
Sbjct: 12  VFPDPGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQSLAGMQFFTN---LK 66

Query: 73  GLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVG 132
            L LS  N    +     L   +L  L + +  L             L  L L +N+L  
Sbjct: 67  ELHLS-HNQISDLSPLKDLT--KLEELSVNRNRLKNLNGIPSA---CLSRLFLDNNELRD 120

Query: 133 NFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQ 192
                 L +   LE+L ++NN    I+ L       L  LD+  N             L+
Sbjct: 121 TDS---LIHLKNLEILSIRNNKLKSIVML--GFLSKLEVLDLHGNEITNTGGLTR---LK 172

Query: 193 KLMYMDISKN 202
           K+ ++D++  
Sbjct: 173 KVNWIDLTGQ 182

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 34/206 (16%), Positives = 74/206 (35%), Gaps = 24/206 (11%)

Query: 148 LLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGN 207
            + +    + +   P   +      ++   +    +       L  +   +   +  + +
Sbjct: 2   SIQRPTPINQVFPDPGLAN--AVKQNLGKQSVTDLVSQKE---LSGVQNFNGDNSNIQ-S 55

Query: 208 IPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRL 267
           +         L  L LS N  S     S +     LE L ++ N  +       +    L
Sbjct: 56  LA-GMQFFTNLKELHLSHNQIS---DLSPLKDLTKLEELSVNRNRLKN---LNGIPSACL 108

Query: 268 RHLYFENNNFSGKIKD--GLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNH 325
             L+ +NN    +++D   L+   +L++L I NN L   I        S+LE+L +  N 
Sbjct: 109 SRLFLDNN----ELRDTDSLIHLKNLEILSIRNNKLK-SIVMLGFL--SKLEVLDLHGNE 161

Query: 326 LEGNVPVQLNNLERLRILDISENRLS 351
           +       L  L+++  +D++  +  
Sbjct: 162 ITNTGG--LTRLKKVNWIDLTGQKCV 185

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 53.8 bits (130), Expect = 5e-08
 Identities = 49/186 (26%), Positives = 74/186 (39%), Gaps = 23/186 (12%)

Query: 221 LDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNF----EGQFFSEYMNLTRLRHLYFENNN 276
           LDL  N  S  L          L LL L++N       G F      L  L  L+  +N 
Sbjct: 42  LDLQSNKLSS-LPSKAFHRLTKLRLLYLNDNKLQTLPAGIF----KELKNLETLWVTDNK 96

Query: 277 FS---GKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSS--ELEILSMSKNHLEGNVP 331
                  + D L    +L  L +  N L   +P     F S  +L  LS+  N L+ ++P
Sbjct: 97  LQALPIGVFDQL---VNLAELRLDRNQLK-SLPP--RVFDSLTKLTYLSLGYNELQ-SLP 149

Query: 332 VQL-NNLERLRILDISENRL-SGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVT 389
             + + L  L+ L +  N+L   P  +   L+ ++ L L  N L  +  G      KL  
Sbjct: 150 KGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKM 209

Query: 390 LNLRDN 395
           L L++N
Sbjct: 210 LQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 43.4 bits (103), Expect = 1e-04
 Identities = 38/147 (25%), Positives = 65/147 (44%), Gaps = 12/147 (8%)

Query: 311 NFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSG-PIASSLNLSSVEHLSLQ 369
           N  ++ + L +  N L        + L +LR+L +++N+L   P      L ++E L + 
Sbjct: 34  NIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93

Query: 370 KNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEH-SNLRFLLLGGNHLQGPIP-- 426
            N L  L  G   +   L  L L  N     +P ++ +  + L +L LG N LQ  +P  
Sbjct: 94  DNKLQALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQS-LPKG 151

Query: 427 --DQLCQLQKLAMMDLSRNKFSGSIPP 451
             D+L  L++L    L  N+    +P 
Sbjct: 152 VFDKLTSLKEL---RLYNNQLK-RVPE 174

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 41.1 bits (97), Expect = 7e-04
 Identities = 49/207 (23%), Positives = 81/207 (39%), Gaps = 40/207 (19%)

Query: 2   NLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPS-VISNLTSLEYLDLSHNNFEGMF 60
           +L+ N + S        LT+L++L ++ N+L  +LP+ +   L +LE L ++ N      
Sbjct: 43  DLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNK----- 96

Query: 61  PLSSL-----ANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLL 115
            L +L          L  L L    N L       LP    +   LTK            
Sbjct: 97  -LQALPIGVFDQLVNLAELRLD--RNQLKS-----LPPR--VFDSLTK------------ 134

Query: 116 HQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDIS 175
               L YL L +N+L  + P  +      L+ L L NN    + +    K   L  L + 
Sbjct: 135 ----LTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLD 189

Query: 176 CNNFRGKLPHNMGVILQKLMYMDISKN 202
            N  + ++P      L+KL  + + +N
Sbjct: 190 NNQLK-RVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 40.7 bits (96), Expect = 9e-04
 Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 9/82 (10%)

Query: 537 TGLDLSCNQLTGEIPSDI-GQLQAILALNLSNNSLSGSIPES-FSNLKMIESLDISYNKL 594
             L ++ N+L   +P  +  QL  +  L L  N L  S+P   F +L  +  L + YN+L
Sbjct: 88  ETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNEL 145

Query: 595 TGQIPP----QLTALNFLSIFN 612
              +P     +LT+L  L ++N
Sbjct: 146 Q-SLPKGVFDKLTSLKELRLYN 166

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 40.7 bits (96), Expect = 9e-04
 Identities = 47/190 (24%), Positives = 76/190 (40%), Gaps = 23/190 (12%)

Query: 120 LKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGI-----LQLPKAKHDFLHHLDI 174
            K LDL  NKL  + P+       KL +L L +N    +      +L       L  L +
Sbjct: 39  TKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKN-----LETLWV 92

Query: 175 SCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSA-GEMKELSLLDLSRNYFSGGLS 233
           + N  +  LP  +   L  L  + + +N  + ++P      + +L+ L L  N       
Sbjct: 93  TDNKLQ-ALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNEL----- 145

Query: 234 QSVVTGCF----SLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSST 289
           QS+  G F    SL+ L L NN  +      +  LT L+ L  +NN      +    S  
Sbjct: 146 QSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLE 205

Query: 290 SLQVLDISNN 299
            L++L +  N
Sbjct: 206 KLKMLQLQEN 215

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 53.6 bits (129), Expect = 1e-07
 Identities = 61/397 (15%), Positives = 114/397 (28%), Gaps = 84/397 (21%)

Query: 59  MFPLSSLANHSKLEGLLLSTRNNT-----------LHVKTENWLPTSQLIVLGLTKCNLN 107
           +  L S  N + L  L    +N             L       LP S+L+          
Sbjct: 3   LVGLLSAHNRAVLAQLGCPIKNLDALENAQAIKKKLGKLGRQVLPPSELLDHLFFHYEFQ 62

Query: 108 GSYPDFLLH-QYHLKYLDLSHNKL----VGNFPTWLLRNNPKLEVLLLKNNSFS--GILQ 160
                F       L+ L+L+  ++           L      L+ + L +      G+  
Sbjct: 63  NQ--RFSAEVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRT 120

Query: 161 LPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSL 220
           L          L +  N+   +         + L  + +   C             +++ 
Sbjct: 121 LLPVFLR-ARKLGLQLNSLGPE-----AC--KDLRDLLLHDQC-------------QITT 159

Query: 221 LDLSRNYFSGG----LSQSVVTGCFSLELLDLSNNNFE---GQFFSEYM-NLTRLRHLYF 272
           L LS N  +      L + +     S+  L L +        +  +  +    +L+ L  
Sbjct: 160 LRLSNNPLTAAGVAVLMEGLAGNT-SVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNV 218

Query: 273 ENNNFSGK----IKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEG 328
             N         +        SL++L +  N LS          S   ++L       EG
Sbjct: 219 AYNGAGDTAALALARAAREHPSLELLHLYFNELS----------SEGRQVLRDLGGAAEG 268

Query: 329 NVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLV 388
              V ++  E   + +     LS                +Q+N LN      + R  +L+
Sbjct: 269 GARVVVSLTEGTAVSEYWSVILS---------------EVQRN-LNSWDRARVQRHLELL 312

Query: 389 TLNLRDNTFS----GRIPHQINEHSNLRFLLLGGNHL 421
             +L D+  +     R    +     +R LL      
Sbjct: 313 LRDLEDSRGATLNPWRKAQLLRVEGEVRALLEQLGSS 349

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 42.4 bits (100), Expect = 4e-04
 Identities = 34/179 (18%), Positives = 56/179 (31%), Gaps = 26/179 (14%)

Query: 2   NLERNFIGSP-LITCLKNLTRLKILDISSNQLN----GSLPSVI-SNLTSLEYLDLSHNN 55
           NL    +    L T L    R + L +  N L       L  ++  +   +  L LS+N 
Sbjct: 107 NLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNP 166

Query: 56  F--EGMFPLSS-LANHSKLEGLLLSTRNNTLHVKTENWL-----PTSQLIVLGLTKCNLN 107
               G+  L   LA ++ +  L L   +  L  +    L        QL  L +      
Sbjct: 167 LTAAGVAVLMEGLAGNTSVTHLSLL--HTGLGDEGLELLAAQLDRNRQLQELNVAYNGAG 224

Query: 108 GSY----PDFLLHQYHLKYLDLSHNKLVGNFPTWL------LRNNPKLEVLLLKNNSFS 156
            +              L+ L L  N+L       L           ++ V L +  + S
Sbjct: 225 DTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS 283

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 51.2 bits (123), Expect = 3e-07
 Identities = 30/136 (22%), Positives = 58/136 (42%), Gaps = 5/136 (3%)

Query: 242 SLELLDLSNNNFEG-QFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSS-TSLQVLDISNN 299
               L L+NN F   +    +  L +LR + F NN  +  I++G     + +  + +++N
Sbjct: 33  YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTSN 91

Query: 300 MLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRL-SGPIASSL 358
            L   + H M      L+ L +  N +          L  +R+L + +N++ +    +  
Sbjct: 92  RLEN-VQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFD 150

Query: 359 NLSSVEHLSLQKNALN 374
            L S+  L+L  N  N
Sbjct: 151 TLHSLSTLNLLANPFN 166

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 48.9 bits (117), Expect = 1e-06
 Identities = 41/131 (31%), Positives = 61/131 (46%), Gaps = 9/131 (6%)

Query: 270 LYFENNNFSGKIKDGLLSS-TSLQVLDISNNMLSGHIPHWMGNFS--SELEILSMSKNHL 326
           L   NN F+     G+      L+ ++ SNN ++  I    G F   S +  + ++ N L
Sbjct: 37  LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEE--GAFEGASGVNEILLTSNRL 93

Query: 327 EGNVPVQL-NNLERLRILDISENRLSG-PIASSLNLSSVEHLSLQKNALNGLIPGELFRS 384
           E NV  ++   LE L+ L +  NR++     S + LSSV  LSL  N +  + PG     
Sbjct: 94  E-NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTL 152

Query: 385 CKLVTLNLRDN 395
             L TLNL  N
Sbjct: 153 HSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 25/155 (16%), Positives = 46/155 (29%), Gaps = 28/155 (18%)

Query: 2   NLERNFIGS-PLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMF 60
            L  N           K L +L+ ++ S+N++           + +  + L+ N  E   
Sbjct: 38  RLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLEN-V 96

Query: 61  PLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHL 120
                     L+ L+L   +N +       +     I  GL+                 +
Sbjct: 97  QHKMFKGLESLKTLMLR--SNRITC-----VGNDSFI--GLSS----------------V 131

Query: 121 KYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSF 155
           + L L  N++              L  L L  N F
Sbjct: 132 RLLSLYDNQIT-TVAPGAFDTLHSLSTLNLLANPF 165

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 16/95 (16%), Positives = 46/95 (48%), Gaps = 12/95 (12%)

Query: 531 SNVNRVTGLDLSCNQLTGEIPSDI-GQLQAILALNLSNNSLSGSIPES-FSNLKMIESLD 588
             + ++  ++ S N++T +I          +  + L++N L  ++    F  L+ +++L 
Sbjct: 54  KKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTSNRLE-NVQHKMFKGLESLKTLM 111

Query: 589 ISYNKLTGQIPP----QLTALNFLSIFNVSYNNLS 619
           +  N++T  +       L+++  LS+++   N ++
Sbjct: 112 LRSNRIT-CVGNDSFIGLSSVRLLSLYD---NQIT 142

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 41.2 bits (97), Expect = 6e-04
 Identities = 22/110 (20%), Positives = 39/110 (35%), Gaps = 20/110 (18%)

Query: 356 SSLNLSSV--------EHLSLQKNALNGLIPGELFRS-CKLVTLNLRDNTFSGRIPHQIN 406
           S+  L+ +          L L  N    L    +F+   +L  +N  +N  +  I     
Sbjct: 19  SNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAF 77

Query: 407 EH-SNLRFLLLGGNHLQGPIP----DQLCQLQKLAMMDLSRNKFSGSIPP 451
           E  S +  +LL  N L+  +       L  L+ L    L  N+ +  +  
Sbjct: 78  EGASGVNEILLTSNRLEN-VQHKMFKGLESLKTL---MLRSNRIT-CVGN 122

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 52.6 bits (126), Expect = 3e-07
 Identities = 59/367 (16%), Positives = 117/367 (31%), Gaps = 49/367 (13%)

Query: 10  SPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHN-NFEGMFPLSSLANH 68
           S       +L  L I  ++S     +L  +++   +L+ L L+     E +  L  L   
Sbjct: 177 SHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATL--LQRA 234

Query: 69  SKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQY-----HLKYL 123
            +LE L        +     + L  +      L   +         L         L  L
Sbjct: 235 PQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTL 294

Query: 124 DLSHNKLVGNFPTWLLRNNPKLEVL-LLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGK 182
           +LS+  +       LL   PKL+ L +L     +G+  L     D L  L +  +     
Sbjct: 295 NLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKD-LRELRVFPSE-PFV 352

Query: 183 LPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSG-GLSQSVVTGCF 241
           +  N+ +  Q L+   +S  C             +L  +       +   L  ++     
Sbjct: 353 MEPNVALTEQGLVS--VSMGC------------PKLESVLYFCRQMTNAAL-ITIARNRP 397

Query: 242 SLELLDLSNNNFEGQFFSEY-----------MNLTRLRHLYFENNNFSGKIKDGLLS--- 287
           ++    L     +   +               +   LR L     + SG + D +     
Sbjct: 398 NMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRL-----SLSGLLTDKVFEYIG 452

Query: 288 --STSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSK-NHLEGNVPVQLNNLERLRILD 344
             +  +++L ++    S    H + +    L  L +      +  +    + LE +R L 
Sbjct: 453 TYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLW 512

Query: 345 ISENRLS 351
           +S   +S
Sbjct: 513 MSSCSVS 519

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 49.9 bits (119), Expect = 2e-06
 Identities = 59/448 (13%), Positives = 135/448 (30%), Gaps = 56/448 (12%)

Query: 5   RNFIGSPLITCLKNLTRLKILDISSNQL-NGSLPSVISNLTSLEYLDLSHNNFEGMFPLS 63
             ++   +     + T L+ + +    + +  L  +  +  + + L LS         L+
Sbjct: 90  GGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLA 149

Query: 64  SLANH-SKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDF--------L 114
           ++A     L+ L L    + +   + +WL         L   N++    +         +
Sbjct: 150 AIAATCRNLKELDLR--ESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLV 207

Query: 115 LHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDI 174
               +LK L L+    +    T LL+  P+LE L      ++  ++      D    L +
Sbjct: 208 TRCPNLKSLKLNRAVPLEKLAT-LLQRAPQLEELGT--GGYTAEVRP-----DVYSGLSV 259

Query: 175 SCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQ 234
           + +              ++L  +    +     +P        L+ L+LS          
Sbjct: 260 ALSG------------CKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLV 307

Query: 235 SVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLS------- 287
            ++  C  L+ L + +   +            LR L    +       +  L+       
Sbjct: 308 KLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSV 367

Query: 288 ---STSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLN--------- 335
                 L+ +      ++      +      +    +     +    + L          
Sbjct: 368 SMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAI 427

Query: 336 --NLERLRILDISENR-LSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSC-KLVTLN 391
             + + LR L +S                 +E LS+     + L    +   C  L  L 
Sbjct: 428 VEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLE 487

Query: 392 LRDNTFSGR-IPHQINEHSNLRFLLLGG 418
           +RD  F  + +    ++   +R L +  
Sbjct: 488 IRDCPFGDKALLANASKLETMRSLWMSS 515

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 48.0 bits (114), Expect = 8e-06
 Identities = 50/283 (17%), Positives = 95/283 (33%), Gaps = 32/283 (11%)

Query: 2   NLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFP 61
              R  + S L   L     L+ L    + +   LP+V S  + L  L+LS+   +    
Sbjct: 247 AEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDL 306

Query: 62  LSSLANHSKLEGLLLSTR--NNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYH 119
           +  L    KL+ L +     +  L V          L  L +         P+  L +  
Sbjct: 307 VKLLCQCPKLQRLWVLDYIEDAGLEVLASTC---KDLRELRVFPSEPFVMEPNVALTEQG 363

Query: 120 LKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFS--GILQL----PKAKHDFLHHLD 173
           L                 +    PKLE +L      +   ++ +    P      L  ++
Sbjct: 364 LVS---------------VSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIE 408

Query: 174 ISCNNFRGKLPHNMGVI-----LQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYF 228
               ++    P ++G        + L  + +S    +    Y     K++ +L ++    
Sbjct: 409 PKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGD 468

Query: 229 SGGLSQSVVTGCFSLELLDLSNNNF-EGQFFSEYMNLTRLRHL 270
           S      V++GC SL  L++ +  F +    +    L  +R L
Sbjct: 469 SDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSL 511

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 45.3 bits (107), Expect = 7e-05
 Identities = 56/397 (14%), Positives = 119/397 (29%), Gaps = 68/397 (17%)

Query: 42  NLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGL 101
            +       +   N   + P + +    K+  + L  +    H    N +P      +  
Sbjct: 39  EIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKP---HFADFNLVPDGWGGYVYP 95

Query: 102 TKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSF---SGI 158
               ++ SY         L+ + L    +  +    + ++    +VL+L +       G+
Sbjct: 96  WIEAMSSSYT-------WLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGL 148

Query: 159 LQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKEL 218
             +       L  LD+  ++                   D+S +    + P +   +  L
Sbjct: 149 AAIAATCR-NLKELDLRESDVD-----------------DVSGHWLS-HFPDTYTSLVSL 189

Query: 219 SLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFS 278
           ++  L+       L + +VT C +L+ L L+      +  +      +L  L        
Sbjct: 190 NISCLASEVSFSAL-ERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELG------- 241

Query: 279 GKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLE 338
                      + +V     + LS  +         EL  LS   + +   +P   +   
Sbjct: 242 -------TGGYTAEVRPDVYSGLSVALSG-----CKELRCLSGFWDAVPAYLPAVYSVCS 289

Query: 339 RLRILDISENRLS--GPIASSLNLSSVEHLSLQKNA-LNGLIPGELFRSCK-LVTLNLRD 394
           RL  L++S   +     +        ++ L +       GL    L  +CK L  L +  
Sbjct: 290 RLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLE--VLASTCKDLRELRVFP 347

Query: 395 -NTFSGRIPHQINEHS---------NLRFLLLGGNHL 421
              F       + E            L  +L     +
Sbjct: 348 SEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQM 384

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 52.0 bits (124), Expect = 4e-07
 Identities = 26/160 (16%), Positives = 49/160 (30%), Gaps = 10/160 (6%)

Query: 329 NVPVQLNNLERLRILDISENRLSGPIASS--LNLSSVEHLSLQKNALNGLIPGELFRSC- 385
           +    L   E L  L I   +    +       L  + +L++ K+ L   +  + F    
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTP 80

Query: 386 KLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKF 445
           +L  LNL  N     +  +  +  +L+ L+L GN L        C L+ L   +      
Sbjct: 81  RLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPL-----HCSCALRWLQRWEEEGLGG 134

Query: 446 SGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGS 485
                             +       L     +  ++ G 
Sbjct: 135 VPEQKLQCHGQGPLAHMPNASCGVPTLKVQVPNASVDVGD 174

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 49.4 bits (117), Expect = 3e-06
 Identities = 22/113 (19%), Positives = 35/113 (30%), Gaps = 26/113 (23%)

Query: 263 NLTRLRHLYFENNNFSGKIKDGLLSS-TSLQVLDISNNMLSGHIPHWMGNFSSELEILSM 321
               L  LY EN      ++   L     L+ L I  + L   +                
Sbjct: 29  GAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVA--------------- 72

Query: 322 SKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALN 374
                    P   +   RL  L++S N L      ++   S++ L L  N L+
Sbjct: 73  ---------PDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 46.3 bits (109), Expect = 2e-05
 Identities = 18/99 (18%), Positives = 29/99 (29%), Gaps = 9/99 (9%)

Query: 207 NIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFE----GQFFSEYM 262
           +  +     + L+ L +        L    + G   L  L +  +         F     
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAF----H 77

Query: 263 NLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNML 301
              RL  L    N     +    +   SLQ L +S N L
Sbjct: 78  FTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 45.9 bits (108), Expect = 3e-05
 Identities = 21/107 (19%), Positives = 31/107 (28%), Gaps = 11/107 (10%)

Query: 3   LERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPS-VISNLTSLEYLDLSHNNFEGMFP 61
                + S     L     L  L I + Q    L    +  L  L  L +  +       
Sbjct: 16  TRDGALDSL--HHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVA 72

Query: 62  LSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNG 108
             +     +L  L LS   N L       L    +  L L +  L+G
Sbjct: 73  PDAFHFTPRLSRLNLS--FNALE-----SLSWKTVQGLSLQELVLSG 112

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 44.3 bits (104), Expect = 9e-05
 Identities = 19/97 (19%), Positives = 33/97 (34%), Gaps = 3/97 (3%)

Query: 549 EIPSDIGQLQAILALNLSNNSLSGSIP-ESFSNLKMIESLDISYNKLTGQIPPQ-LTALN 606
           +    +   + +  L + N      +       L  + +L I  + L   + P       
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTP 80

Query: 607 FLSIFNVSYNNLSGRTPDKGQFATFDESSYRGNPSLC 643
            LS  N+S+N L   +    Q  +  E    GNP  C
Sbjct: 81  RLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHC 117

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 42.4 bits (99), Expect = 3e-04
 Identities = 23/127 (18%), Positives = 34/127 (26%), Gaps = 27/127 (21%)

Query: 29  SNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTE 88
           +          +    +L  L + +        L  L     L GL              
Sbjct: 16  TRDGALDSLHHLPGAENLTELYIENQQ-----HLQHLELRD-LRGL-------------- 55

Query: 89  NWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVL 148
                 +L  L + K  L    PD       L  L+LS N L       +      L+ L
Sbjct: 56  -----GELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTV--QGLSLQEL 108

Query: 149 LLKNNSF 155
           +L  N  
Sbjct: 109 VLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 42.4 bits (99), Expect = 3e-04
 Identities = 17/85 (20%), Positives = 33/85 (38%), Gaps = 2/85 (2%)

Query: 535 RVTGLDLSCNQLTGEIPS-DIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNK 593
            +T L +   Q    +   D+  L  +  L +  + L    P++F     +  L++S+N 
Sbjct: 32  NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA 91

Query: 594 LTGQIPPQLTALNFLSIFNVSYNNL 618
           L   +  +      L    +S N L
Sbjct: 92  LE-SLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 42.0 bits (98), Expect = 5e-04
 Identities = 14/82 (17%), Positives = 26/82 (31%), Gaps = 11/82 (13%)

Query: 111 PDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDF-- 168
              L    +L  L + + + + +     LR   +L  L +  +    +     A   F  
Sbjct: 24  LHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFV-----APDAFHF 78

Query: 169 ---LHHLDISCNNFRGKLPHNM 187
              L  L++S N     L    
Sbjct: 79  TPRLSRLNLSFNALE-SLSWKT 99

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 48.6 bits (116), Expect = 1e-06
 Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 2/76 (2%)

Query: 2   NLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFP 61
           +L    + S  ++ L  L +LK L++S N++ G L  +   L +L +L+LS N  + +  
Sbjct: 55  SLINVGLIS--VSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDIST 112

Query: 62  LSSLANHSKLEGLLLS 77
           L  L     L+ L L 
Sbjct: 113 LEPLKKLECLKSLDLF 128

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 42.8 bits (101), Expect = 1e-04
 Identities = 24/101 (23%), Positives = 41/101 (40%), Gaps = 4/101 (3%)

Query: 521 MKNRYEI-YNGSNVNRVTGLDLSCNQLT-GEIPSDIGQLQAILALNLSNNSLSGSIPESF 578
           MK R  +         V  L L   +   G+I     +   +  L+L N  L  S+  + 
Sbjct: 10  MKRRIHLELRNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SV-SNL 67

Query: 579 SNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLS 619
             L  ++ L++S N++ G +      L  L+  N+S N L 
Sbjct: 68  PKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLK 108

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 24/117 (20%), Positives = 46/117 (39%), Gaps = 10/117 (8%)

Query: 260 EYMNLTRLRHLYFENNNFSGKIKDGLLSS-TSLQVLDISNNMLSGHIPHWMGNFSS--EL 316
                  +R L  +N   +    +GL +   +L+ L + N  L       + N     +L
Sbjct: 19  RNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS-----VSNLPKLPKL 73

Query: 317 EILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGP--IASSLNLSSVEHLSLQKN 371
           + L +S+N + G + +    L  L  L++S N+L     +     L  ++ L L   
Sbjct: 74  KKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 40.9 bits (96), Expect = 4e-04
 Identities = 27/138 (19%), Positives = 47/138 (34%), Gaps = 29/138 (21%)

Query: 17  KNLTRLKILDISSNQLN-GSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLL 75
           +    ++ L + + + N G +  + +   +LE+L L +     +  L  L     L+ L 
Sbjct: 21  RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPK---LKKLE 77

Query: 76  LSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFP 135
           LS   N                        + G          +L +L+LS NKL     
Sbjct: 78  LS--EN-----------------------RIFGGLDMLAEKLPNLTHLNLSGNKLKDIST 112

Query: 136 TWLLRNNPKLEVLLLKNN 153
              L+    L+ L L N 
Sbjct: 113 LEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 40.9 bits (96), Expect = 4e-04
 Identities = 26/94 (27%), Positives = 36/94 (38%), Gaps = 8/94 (8%)

Query: 89  NWLPTSQLIVLGLTKCNLN-GSYPDFLLHQYHLKYLDLSHNKL--VGNFPTWLLRNNPKL 145
                + +  L L  C  N G          +L++L L +  L  V N P       PKL
Sbjct: 19  RNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLP-----KLPKL 73

Query: 146 EVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNF 179
           + L L  N   G L +   K   L HL++S N  
Sbjct: 74  KKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKL 107

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 47.7 bits (114), Expect = 1e-06
 Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 2/76 (2%)

Query: 2   NLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFP 61
           +     + S  I  L  L +LK L++S N+++G L  +     +L +L+LS N  + +  
Sbjct: 48  STINVGLTS--IANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLST 105

Query: 62  LSSLANHSKLEGLLLS 77
           +  L     L+ L L 
Sbjct: 106 IEPLKKLENLKSLDLF 121

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 23/114 (20%), Positives = 46/114 (40%), Gaps = 10/114 (8%)

Query: 263 NLTRLRHLYFENNNFS-GKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSS--ELEIL 319
             + ++ L  +N+  + GK++        L+ L   N  L+      + N     +L+ L
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-----SIANLPKLNKLKKL 69

Query: 320 SMSKNHLEGNVPVQLNNLERLRILDISENRLSGP--IASSLNLSSVEHLSLQKN 371
            +S N + G + V       L  L++S N++     I     L +++ L L   
Sbjct: 70  ELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 43.1 bits (102), Expect = 5e-05
 Identities = 20/101 (19%), Positives = 42/101 (41%), Gaps = 4/101 (3%)

Query: 521 MKNRYE-IYNGSNVNRVTGLDLSCNQLT-GEIPSDIGQLQAILALNLSNNSLSGSIPESF 578
           M  R          + V  L L  ++   G++     + + +  L+  N  L+ SI  + 
Sbjct: 3   MGRRIHLELRNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SI-ANL 60

Query: 579 SNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLS 619
             L  ++ L++S N+++G +         L+  N+S N + 
Sbjct: 61  PKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIK 101

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 39.7 bits (93), Expect = 8e-04
 Identities = 27/138 (19%), Positives = 48/138 (34%), Gaps = 29/138 (21%)

Query: 17  KNLTRLKILDISSNQLN-GSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLL 75
           +  + +K L + +++ N G L  +      LE+L   +     +  L  L     L+ L 
Sbjct: 14  RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNK---LKKLE 70

Query: 76  LSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFP 135
           LS  +N                        ++G          +L +L+LS NK+     
Sbjct: 71  LS--DN-----------------------RVSGGLEVLAEKCPNLTHLNLSGNKIKDLST 105

Query: 136 TWLLRNNPKLEVLLLKNN 153
              L+    L+ L L N 
Sbjct: 106 IEPLKKLENLKSLDLFNC 123

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 48.9 bits (117), Expect = 1e-06
 Identities = 29/130 (22%), Positives = 53/130 (40%), Gaps = 8/130 (6%)

Query: 270 LYFENNNFSGKIKDGLLSS-TSLQVLDISNNMLSGHIPHWMGNFS--SELEILSMSKNHL 326
           +  E N     I  G  S    L+ +D+SNN +S  +      F     L  L +  N +
Sbjct: 37  IRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQIS-ELAP--DAFQGLRSLNSLVLYGNKI 92

Query: 327 EGNVPVQLNNLERLRILDISENRLSG-PIASSLNLSSVEHLSLQKNALNGLIPGELFRSC 385
                     L  L++L ++ N+++   + +  +L ++  LSL  N L  +  G      
Sbjct: 93  TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLR 152

Query: 386 KLVTLNLRDN 395
            + T++L  N
Sbjct: 153 AIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 44.3 bits (105), Expect = 6e-05
 Identities = 26/95 (27%), Positives = 49/95 (51%), Gaps = 12/95 (12%)

Query: 531 SNVNRVTGLDLSCNQLTGEIPSDI-GQLQAILALNLSNNSLSGSIPES-FSNLKMIESLD 588
           S   ++  +DLS NQ++ E+  D    L+++ +L L  N ++  +P+S F  L  ++ L 
Sbjct: 53  SPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLL 110

Query: 589 ISYNKLTGQIPPQ----LTALNFLSIFNVSYNNLS 619
           ++ NK+   +       L  LN LS+++   N L 
Sbjct: 111 LNANKIN-CLRVDAFQDLHNLNLLSLYD---NKLQ 141

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 35/155 (22%), Positives = 49/155 (31%), Gaps = 29/155 (18%)

Query: 2   NLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPS-VISNLTSLEYLDLSHNNFEGMF 60
            LE+N I            +L+ +D+S+NQ++  L       L SL  L L  N      
Sbjct: 38  RLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKITE-L 95

Query: 61  PLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHL 120
           P S       L+ LLL+   N +     N L         L                  L
Sbjct: 96  PKSLFEGLFSLQLLLLN--ANKI-----NCLRVD--AFQDLHN----------------L 130

Query: 121 KYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSF 155
             L L  NKL              ++ + L  N F
Sbjct: 131 NLLSLYDNKL-QTIAKGTFSPLRAIQTMHLAQNPF 164

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 40.8 bits (96), Expect = 6e-04
 Identities = 33/136 (24%), Positives = 56/136 (41%), Gaps = 5/136 (3%)

Query: 311 NFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSG-PIASSLNLSSVEHLSLQ 369
           N    +  + + +N ++   P   +  ++LR +D+S N++S     +   L S+  L L 
Sbjct: 29  NLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLY 88

Query: 370 KNALNGLIPGELFRS-CKLVTLNLRDNTFSGRIPHQINEH-SNLRFLLLGGNHLQGPIPD 427
            N +  L P  LF     L  L L  N  +  +     +   NL  L L  N LQ     
Sbjct: 89  GNKITEL-PKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKG 146

Query: 428 QLCQLQKLAMMDLSRN 443
               L+ +  M L++N
Sbjct: 147 TFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 40.8 bits (96), Expect = 7e-04
 Identities = 32/166 (19%), Positives = 51/166 (30%), Gaps = 42/166 (25%)

Query: 23  KILDISSNQLNGSLPSVISNLTSLEYLDLSHNNF----EGMFPLSSLANHSKLEGLLLST 78
             + +  N +    P   S    L  +DLS+N         F    L +   L  L+L  
Sbjct: 35  TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAF--QGLRS---LNSLVLY- 88

Query: 79  RNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWL 138
             N +       LP S  +  GL                  L+ L L+ NK+        
Sbjct: 89  -GNKITE-----LPKS--LFEGLFS----------------LQLLLLNANKIN-CLRVDA 123

Query: 139 LRNNPKLEVLLLKNNSFSGILQ-----LPKAKHDFLHH--LDISCN 177
            ++   L +L L +N    I +     L   +   L        C+
Sbjct: 124 FQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCH 169

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 48.1 bits (115), Expect = 1e-06
 Identities = 26/152 (17%), Positives = 48/152 (31%), Gaps = 32/152 (21%)

Query: 246 LDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHI 305
           + L+    E    ++Y N  R R L          I++   +      +D S+N +    
Sbjct: 2   VKLTAELIEQA--AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRK-- 56

Query: 306 PHWMGNFSS--ELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSV 363
              +  F     L+ L ++ N +          L  L  L ++ N L         L  +
Sbjct: 57  ---LDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-------ELGDL 106

Query: 364 EHLSLQKNALNGLIPGELFRSCKLVTLNLRDN 395
           + L+  K+               L  L +  N
Sbjct: 107 DPLASLKS---------------LTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 46.6 bits (111), Expect = 4e-06
 Identities = 18/76 (23%), Positives = 32/76 (42%), Gaps = 2/76 (2%)

Query: 2   NLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFP 61
           +   N I    +     L RLK L +++N++      +   L  L  L L++N+   +  
Sbjct: 48  DFSDNEIRK--LDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGD 105

Query: 62  LSSLANHSKLEGLLLS 77
           L  LA+   L  L + 
Sbjct: 106 LDPLASLKSLTYLCIL 121

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 25/154 (16%), Positives = 46/154 (29%), Gaps = 33/154 (21%)

Query: 1   MNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMF 60
           + L    I         N  R + LD+   ++   + ++ + L   + +D S N    + 
Sbjct: 2   VKLTAELIEQ--AAQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKLD 58

Query: 61  PLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHL 120
               L    +L+ LL++  NN                        +             L
Sbjct: 59  GFPLL---RRLKTLLVN--NN-----------------------RICRIGEGLDQALPDL 90

Query: 121 KYLDLSHNKLVGNFPTWL-LRNNPKLEVLLLKNN 153
             L L++N L         L +   L  L +  N
Sbjct: 91  TELILTNNSL-VELGDLDPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 24/112 (21%), Positives = 38/112 (33%), Gaps = 3/112 (2%)

Query: 333 QLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNL 392
           Q  N  R R LD+   ++         L   + +    N +  L         +L TL +
Sbjct: 14  QYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLV 71

Query: 393 RDNTFSGRIPHQINEHSNLRFLLLGGNHLQGP-IPDQLCQLQKLAMMDLSRN 443
            +N              +L  L+L  N L      D L  L+ L  + + RN
Sbjct: 72  NNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 41.2 bits (97), Expect = 3e-04
 Identities = 19/94 (20%), Positives = 42/94 (44%), Gaps = 3/94 (3%)

Query: 526 EIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIE 585
           +    +N  R   LDL   ++   I +    L    A++ S+N +   + + F  L+ ++
Sbjct: 11  QAAQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KL-DGFPLLRRLK 67

Query: 586 SLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLS 619
           +L ++ N++         AL  L+   ++ N+L 
Sbjct: 68  TLLVNNNRICRIGEGLDQALPDLTELILTNNSLV 101

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 48.7 bits (116), Expect = 4e-06
 Identities = 34/176 (19%), Positives = 67/176 (38%), Gaps = 17/176 (9%)

Query: 12  LITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANH-SK 70
           L   L   ++L+ L +   +L+  + + ++  ++L  L+LS  +    F L +L +  S+
Sbjct: 110 LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR 169

Query: 71  LEGLLLS-----TRNNTLHVKTENWLPTSQLIVLGLTKCNLN---GSYPDFLLHQYHLKY 122
           L+ L LS     T  +           +  +  L L+    N         +    +L +
Sbjct: 170 LDELNLSWCFDFTEKHVQVAVAHV---SETITQLNLSGYRKNLQKSDLSTLVRRCPNLVH 226

Query: 123 LDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSF---SGILQLPKAKHDFLHHLDIS 175
           LDLS + ++ N           L+ L L          +L+L +     L  L + 
Sbjct: 227 LDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPT--LKTLQVF 280

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 44.9 bits (106), Expect = 6e-05
 Identities = 45/222 (20%), Positives = 90/222 (40%), Gaps = 20/222 (9%)

Query: 93  TSQLIVLGLTKCNLNGSYPDFLLHQY----HLKYLDLSHNKLVGNFPTWLLRNNPKLEVL 148
           T +L+  G+       S+ D  L ++     ++++DLS++ +  +    +L    KL+ L
Sbjct: 64  TGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123

Query: 149 LLKNNSFSGILQLPKAKHDFLHHLDIS-CNNFRGKLPHNMGVILQKLMYMDISK------ 201
            L+    S  +    AK+  L  L++S C+ F       +     +L  +++S       
Sbjct: 124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTE 183

Query: 202 NCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSN-NNFEGQFFSE 260
              +  + + +  + +L+L    +N     L  ++V  C +L  LDLS+    +   F E
Sbjct: 184 KHVQVAVAHVSETITQLNLSGYRKNLQKSDL-STLVRRCPNLVHLDLSDSVMLKNDCFQE 242

Query: 261 YMNLTRLRHLYFENNNFSGKIKDGLLSS----TSLQVLDISN 298
           +  L  L+HL          I    L       +L+ L +  
Sbjct: 243 FFQLNYLQHLSLSRCY---DIIPETLLELGEIPTLKTLQVFG 281

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 45.1 bits (107), Expect = 2e-05
 Identities = 32/142 (22%), Positives = 56/142 (39%), Gaps = 14/142 (9%)

Query: 12  LITCLKNLTRLKILDISSNQLNGSLPSVISNL---TSLEYLDLSHNNFEGMFPLSSLANH 68
           +   L  L   K L +S+N +       IS+L    +L  L L  N  + +  L ++A+ 
Sbjct: 40  MDATLSTLKACKHLALSTNNI-----EKISSLSGMENLRILSLGRNLIKKIENLDAVAD- 93

Query: 69  SKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNG-SYPDFLLHQYHLKYLDLSH 127
             LE L +S   N +            L VL ++   +      D L     L+ L L+ 
Sbjct: 94  -TLEELWIS--YNQIA-SLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAG 149

Query: 128 NKLVGNFPTWLLRNNPKLEVLL 149
           N L  ++      +  ++EV+ 
Sbjct: 150 NPLYNDYKENNATSEYRIEVVK 171

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 35/151 (23%), Positives = 60/151 (39%), Gaps = 19/151 (12%)

Query: 12  LITCLKNLTRLKILDISSNQLNGS------LPSVISNLTSLEYLDLSHNNFEGMFPLSSL 65
            I   +    +   +    +L+G       + + +S L + ++L LS NN E +  LS +
Sbjct: 10  AIRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGM 69

Query: 66  ANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNG---SYPDFLLHQYHLKY 122
            N   L  L L    N +  K EN    +      L +  ++    +    +    +L+ 
Sbjct: 70  EN---LRILSLG--RNLIK-KIENLDAVADT----LEELWISYNQIASLSGIEKLVNLRV 119

Query: 123 LDLSHNKLVGNFPTWLLRNNPKLEVLLLKNN 153
           L +S+NK+        L    KLE LLL  N
Sbjct: 120 LYMSNNKITNWGEIDKLAALDKLEDLLLAGN 150

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 41.2 bits (97), Expect = 4e-04
 Identities = 28/80 (35%), Positives = 39/80 (48%), Gaps = 6/80 (7%)

Query: 2   NLERNFIGSPLITCLKNL----TRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFE 57
           NL    +G  LI  ++NL      L+ L IS NQ+  +  S I  L +L  L +S+N   
Sbjct: 71  NLRILSLGRNLIKKIENLDAVADTLEELWISYNQI--ASLSGIEKLVNLRVLYMSNNKIT 128

Query: 58  GMFPLSSLANHSKLEGLLLS 77
               +  LA   KLE LLL+
Sbjct: 129 NWGEIDKLAALDKLEDLLLA 148

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 31/88 (35%), Positives = 49/88 (55%), Gaps = 9/88 (10%)

Query: 536 VTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLT 595
           VT L L  NQ T  +P ++   + +  ++LSNN +S    +SFSN+  + +L +SYN+L 
Sbjct: 33  VTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR 91

Query: 596 GQIPP----QLTALNFLSIFNVSYNNLS 619
             IPP     L +L  LS+     N++S
Sbjct: 92  -CIPPRTFDGLKSLRLLSLHG---NDIS 115

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 40.4 bits (95), Expect = 6e-04
 Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 12/85 (14%)

Query: 3   LERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPS-VISNLTSLEYLDLSHNNFEGMFP 61
           L+ N     +   L N   L ++D+S+N+++ +L +   SN+T L  L LS+N       
Sbjct: 38  LDGNQFTL-VPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSYNR------ 89

Query: 62  LSSLANH--SKLEGL-LLSTRNNTL 83
           L  +       L+ L LLS   N +
Sbjct: 90  LRCIPPRTFDGLKSLRLLSLHGNDI 114

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 45.0 bits (107), Expect = 4e-05
 Identities = 37/173 (21%), Positives = 72/173 (41%), Gaps = 25/173 (14%)

Query: 288 STSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISE 347
                  ++    ++  +     N  + ++ +  + + ++ +V   +  L  +R L +  
Sbjct: 18  FAETIKANLKKKSVTDAVT---QNELNSIDQIIANNSDIK-SVQG-IQYLPNVRYLALGG 72

Query: 348 NRLSGPIASSL----NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPH 403
           N+L       +     L+++ +L L  N L  L  G   +   L  L L +N     +P 
Sbjct: 73  NKLH-----DISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ-SLPD 126

Query: 404 QINEH-SNLRFLLLGGNHLQGPIP----DQLCQLQKLAMMDLSRNKFSGSIPP 451
            + +  +NL +L L  N LQ  +P    D+L  L +L   DLS N+   S+P 
Sbjct: 127 GVFDKLTNLTYLNLAHNQLQS-LPKGVFDKLTNLTEL---DLSYNQLQ-SLPE 174

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 44.2 bits (103), Expect = 1e-04
 Identities = 40/321 (12%), Positives = 93/321 (28%), Gaps = 38/321 (11%)

Query: 62  LSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLK 121
            SS     K  G L++ +    +V+T   +     +       + + +     L    LK
Sbjct: 43  FSSAGEAEKAAGKLIAEKTKKGYVETLEEVAKEMKVEAKKYALSYDEAEEGVNLMDKILK 102

Query: 122 YLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRG 181
              L   K +          +       +  N      +    +  F   +D        
Sbjct: 103 DKKLPSLKQITIGXWGYEGEDCSDIADGIVENK----EKFAHFEGLFWGDIDFEEQEISW 158

Query: 182 KLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCF 241
               ++  +L  +  ++  K     N+         L  L++        + + ++    
Sbjct: 159 IEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDL 218

Query: 242 -SLELLDLS--NNNFEG-------QFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSS--- 288
            +LE L L     ++         +          L+ L   +      + +  L S   
Sbjct: 219 PNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDIL 278

Query: 289 TSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISEN 348
             L+ +DIS  +L+               +L              ++ ++ L+ +++  N
Sbjct: 279 PQLETMDISAGVLT----------DEGARLLLDH-----------VDKIKHLKFINMKYN 317

Query: 349 RLSGPIASSLNLSSVEHLSLQ 369
            LS  +   L  S    + + 
Sbjct: 318 YLSDEMKKELQKSLPMKIDVS 338

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	735
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.98
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.98
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.96
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.96
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.96
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.96
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.95
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.95
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.95
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.95
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.95
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.95
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.95
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.95
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.95
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.95
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.95
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.94
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.94
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.94
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.94
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.94
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.93
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.93
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.93
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.93
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.93
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.92
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.91
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.91
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.91
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.91
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.9
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.89
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.88
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.88
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.88
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.88
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.87
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.87
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.87
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.86
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.86
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.86
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.86
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.86
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.85
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.85
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.84
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.83
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.81
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.81
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.8
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.8
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.79
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.79
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.78
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.78
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.77
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.77
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.77
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.76
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.75
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.74
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.74
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.74
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.73
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.73
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.72
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.72
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.71
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.69
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.69
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.69
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.69
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.69
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.69
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.66
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.66
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.65
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.64
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.64
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.63
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.63
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.63
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.61
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.61
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.6
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.57
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.56
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.52
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.5
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.5
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.49
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.49
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.46
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.46
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.43
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.42
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.41
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.34
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.22
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.22
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.21
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.16
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.07
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.77
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.76
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.43
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.36
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.3
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.26
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.82
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.79
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.08
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.06
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.98
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.82

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=4.3e-78  Score=701.95  Aligned_cols=634  Identities=32%  Similarity=0.441  Sum_probs=497.0

Q ss_pred             cCCCCCCCCcccc--ccCCCCCCCEEeCCCCcCCCCcchhh-hCCCCCCEEeCCCCcccccCChhh--hhcCCCCCeeec
Q 004704            2 NLERNFIGSPLIT--CLKNLTRLKILDISSNQLNGSLPSVI-SNLTSLEYLDLSHNNFEGMFPLSS--LANHSKLEGLLL   76 (735)
Q Consensus         2 ~Ls~n~l~~~~~~--~~~~l~~L~~L~Ls~n~i~~~~p~~~-~~l~~L~~L~Ls~n~l~~~~~~~~--~~~l~~L~~L~L   76 (735)
                      ||++|.++|.+|.  .|+++++|++|+|++|.+++.+|..+ .++++|++||+++|++++..|...  +.++++|++|++
T Consensus       106 ~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~L  185 (768)
T 3rgz_A          106 DLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAI  185 (768)
T ss_dssp             ECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEEC
T ss_pred             ECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEEC
Confidence            4444444444444  44444444444444444444444333 444444444444444444333111  455556666666


Q ss_pred             ccccccccccCCCCCCCCCeeEEEeeCCCCCCCCchhhhCCCCCCEEEccCCcCcccCchHHHhCCCCCcEEECcCCcCc
Q 004704           77 STRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFS  156 (735)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~  156 (735)
                      ++|.+.+..+   +..+++|++|++++|++.+.+|. +.++++|++|++++|++++.+|..+ ..+++|++|++++|.++
T Consensus       186 s~n~l~~~~~---~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l-~~l~~L~~L~Ls~n~l~  260 (768)
T 3rgz_A          186 SGNKISGDVD---VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAI-STCTELKLLNISSNQFV  260 (768)
T ss_dssp             CSSEEESCCB---CTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHT-TTCSSCCEEECCSSCCE
T ss_pred             CCCcccccCC---cccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHH-hcCCCCCEEECCCCccc
Confidence            6555543332   36778999999999999988877 8999999999999999987777765 58999999999999998


Q ss_pred             ccCcCCcCCCCCcCEEEccCCcCCCcCChhHHHhcccCcEEECcCCcCCCCCCcccCCCCCCCEEECCCccccCccchhh
Q 004704          157 GILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSV  236 (735)
Q Consensus       157 ~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~  236 (735)
                      +..|..  .+++|++|++++|.+++.+|..++..+++|++|++++|.+++.+|..++.+++|++|++++|.+++.+|...
T Consensus       261 ~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~  338 (768)
T 3rgz_A          261 GPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDT  338 (768)
T ss_dssp             ESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHH
T ss_pred             CccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHH
Confidence            876654  789999999999999999999988767999999999999999999999999999999999999998999887


Q ss_pred             hhCCCCCCEEEccCCCCCCcCcccccCCC-CCCEEEccccccCccccccccC--CCCCCEEEeeCCccCCCCCchhhhhc
Q 004704          237 VTGCFSLELLDLSNNNFEGQFFSEYMNLT-RLRHLYFENNNFSGKIKDGLLS--STSLQVLDISNNMLSGHIPHWMGNFS  313 (735)
Q Consensus       237 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~l~~--~~~L~~L~l~~n~l~~~~p~~~~~~~  313 (735)
                      +..+++|++|++++|.+++.+|..+..++ +|++|++++|.+++.+|..+..  +++|++|++++|.+++.+|..+..++
T Consensus       339 l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~  418 (768)
T 3rgz_A          339 LLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCS  418 (768)
T ss_dssp             HTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCT
T ss_pred             HhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCC
Confidence            78899999999999999988899888887 9999999999999888888776  78999999999999999999999988


Q ss_pred             ccCcEEEcCCCcCCCCCCccCCCCCCCCEEEcccCCCCccCCCcc-CCCCccEEEccCCcccccCcccccCCCCCcEEeC
Q 004704          314 SELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSL-NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNL  392 (735)
Q Consensus       314 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l  392 (735)
                      . |+.|++++|++++.+|..+..+++|++|++++|.+.+.++..+ .+++|++|++++|.+++.+|..+..+++|++|++
T Consensus       419 ~-L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L  497 (768)
T 3rgz_A          419 E-LVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISL  497 (768)
T ss_dssp             T-CCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEEC
T ss_pred             C-CCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEc
Confidence            7 9999999999999999999999999999999999998888777 8999999999999999999999999999999999


Q ss_pred             CCCcccccCChhhhCCCCccEEEccCCcCCCCCchhhhcCCCCCEEECcCCcCCCCCCchhhcccccccccCCccCCCCC
Q 004704          393 RDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKL  472 (735)
Q Consensus       393 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~  472 (735)
                      ++|++++.+|.+++.+++|++|++++|++.+.+|..+..+++|+.|++++|+++|.+|..+.....+....  ...+...
T Consensus       498 ~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~--~~~~~~~  575 (768)
T 3rgz_A          498 SNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAAN--FIAGKRY  575 (768)
T ss_dssp             CSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCS--TTCSCEE
T ss_pred             cCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhh--ccccccc
Confidence            99999999999999999999999999999999999999999999999999999999999887654322110  0000000


Q ss_pred             ---CCcccchhhhcccCCCCCCCccccchhhhhhhhhhhhccccceeEEEEeccccccccCCcccccceEECCCCcccCC
Q 004704          473 ---NSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGE  549 (735)
Q Consensus       473 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~  549 (735)
                         ........ ....................+.....   .....   ....+... .....+++|+.|||++|+++|.
T Consensus       576 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~---~~l~~---~~~~g~~~-~~~~~l~~L~~LdLs~N~l~g~  647 (768)
T 3rgz_A          576 VYIKNDGMKKE-CHGAGNLLEFQGIRSEQLNRLSTRNP---CNITS---RVYGGHTS-PTFDNNGSMMFLDMSYNMLSGY  647 (768)
T ss_dssp             EEEECCSCCTT-CCSSEEEEECTTCCGGGGGGGGGTCC---SCTTS---CEEEEECC-CSCSSSBCCCEEECCSSCCBSC
T ss_pred             ccccccccccc-ccccccccccccccchhhhccccccc---ccccc---ceecccCc-hhhhccccccEEECcCCccccc
Confidence               00000000 00000000000000000000000000   00000   00001100 1123568899999999999999


Q ss_pred             CCccccccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccCCccccCCCCCCeEEcccCcCcccCCCCCCCC
Q 004704          550 IPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPDKGQFA  629 (735)
Q Consensus       550 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~  629 (735)
                      +|.+++.+++|+.|+|++|+++|.+|..|+++++|++||||+|+++|.+|..+..+++|++||+++|+++|.+|+.++|.
T Consensus       648 ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~  727 (768)
T 3rgz_A          648 IPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFE  727 (768)
T ss_dssp             CCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGG
T ss_pred             CCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCcccCCCCCCCCccccCCCCCC
Q 004704          630 TFDESSYRGNPSLCAWLIQQKYSRT  654 (735)
Q Consensus       630 ~~~~~~~~gN~~lc~~~~~~~~~~~  654 (735)
                      ++...+|.|||++||.++. .|...
T Consensus       728 ~~~~~~~~gN~~Lcg~~l~-~C~~~  751 (768)
T 3rgz_A          728 TFPPAKFLNNPGLCGYPLP-RCDPS  751 (768)
T ss_dssp             GSCGGGGCSCTEEESTTSC-CCCSC
T ss_pred             cCCHHHhcCCchhcCCCCc-CCCCC
Confidence            9999999999999999876 67543

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=2.3e-69  Score=628.51  Aligned_cols=629  Identities=28%  Similarity=0.364  Sum_probs=480.7

Q ss_pred             CcCCCCCCCCc---cccccCCCCCCCEEeCCCCcCCCCcchhhhCCCCCCEEeCCCCcccccCCh-hhhhcCCCCCeeec
Q 004704            1 MNLERNFIGSP---LITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPL-SSLANHSKLEGLLL   76 (735)
Q Consensus         1 L~Ls~n~l~~~---~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~~l~~L~~L~L   76 (735)
                      |||+++.+.|.   +|++|.++++|+.++++.|.+. .+|+.|+++++|++|||++|.++|.+|. ..++++++|++|++
T Consensus        55 L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~-~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L  133 (768)
T 3rgz_A           55 IDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHIN-GSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNV  133 (768)
T ss_dssp             EECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEE-ECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEEC
T ss_pred             EECCCCCcCCccCccChhHhccCcccccCCcCCCcC-CCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEEC
Confidence            57899999998   8889999999999999998776 4667899999999999999999887773 26889999999999


Q ss_pred             ccccccccccCCCCCCCCCeeEEEeeCCCCCCCCchh---hhCCCCCCEEEccCCcCcccCchHHHhCCCCCcEEECcCC
Q 004704           77 STRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDF---LLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNN  153 (735)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~---l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n  153 (735)
                      ++|.+.+.++...+..+++|++|++++|++++..|..   +.++++|++|++++|.+++..|.   ..+++|++|++++|
T Consensus       134 s~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~---~~l~~L~~L~Ls~n  210 (768)
T 3rgz_A          134 SSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV---SRCVNLEFLDVSSN  210 (768)
T ss_dssp             CSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC---TTCTTCCEEECCSS
T ss_pred             cCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCc---ccCCcCCEEECcCC
Confidence            9998877777665578889999999999998888777   78889999999999998876664   47889999999999


Q ss_pred             cCcccCcCCcCCCCCcCEEEccCCcCCCcCChhHHHhcccCcEEECcCCcCCCCCCcccCCCCCCCEEECCCccccCccc
Q 004704          154 SFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLS  233 (735)
Q Consensus       154 ~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~  233 (735)
                      .+++..|. +..+++|++|++++|.+++.+|..+.. +++|++|++++|.+.+.+|..  .+++|++|++++|.+++.+|
T Consensus       211 ~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~-l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip  286 (768)
T 3rgz_A          211 NFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAIST-CTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIP  286 (768)
T ss_dssp             CCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTT-CSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCC
T ss_pred             cCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhc-CCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccC
Confidence            99887776 888999999999999998777777765 789999999999888777765  78889999999999888888


Q ss_pred             hhhhhCCCCCCEEEccCCCCCCcCcccccCCCCCCEEEccccccCcccccc-ccCCCCCCEEEeeCCccCCCCCchhhhh
Q 004704          234 QSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDG-LLSSTSLQVLDISNNMLSGHIPHWMGNF  312 (735)
Q Consensus       234 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~~~~L~~L~l~~n~l~~~~p~~~~~~  312 (735)
                      ..++..+++|++|++++|.+++..|..|..+++|++|++++|.+.+.+|.. +..+++|++|++++|.+++.+|..+..+
T Consensus       287 ~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l  366 (768)
T 3rgz_A          287 DFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNL  366 (768)
T ss_dssp             CCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHH
T ss_pred             HHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhh
Confidence            877665688999999999888888888888999999999999888777765 7888899999999998888888888887


Q ss_pred             cccCcEEEcCCCcCCCCCCccCCC--CCCCCEEEcccCCCCccCCCcc-CCCCccEEEccCCcccccCcccccCCCCCcE
Q 004704          313 SSELEILSMSKNHLEGNVPVQLNN--LERLRILDISENRLSGPIASSL-NLSSVEHLSLQKNALNGLIPGELFRSCKLVT  389 (735)
Q Consensus       313 ~~~L~~L~l~~n~l~~~~~~~l~~--l~~L~~L~L~~n~l~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~  389 (735)
                      +.+|+.|++++|++++.+|..+..  +++|++|++++|.+++.++..+ .+++|++|++++|.+++.+|..+..+++|+.
T Consensus       367 ~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~  446 (768)
T 3rgz_A          367 SASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRD  446 (768)
T ss_dssp             TTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCE
T ss_pred             hcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCE
Confidence            734888888888888777776666  6778888888888877766665 7788888888888888777877888888888


Q ss_pred             EeCCCCcccccCChhhhCCCCccEEEccCCcCCCCCchhhhcCCCCCEEECcCCcCCCCCCchhhcccccccc--cCCcc
Q 004704          390 LNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVG--SDDVL  467 (735)
Q Consensus       390 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~--~~~~~  467 (735)
                      |++++|.+++.+|..+..+++|++|++++|++++.+|..+..+++|+.|++++|++++.+|..++.++.++..  +.+.+
T Consensus       447 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l  526 (768)
T 3rgz_A          447 LKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSF  526 (768)
T ss_dssp             EECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCC
T ss_pred             EECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcc
Confidence            8888888887778778888888888888888887778778888888888888888887888777776655442  22222


Q ss_pred             CCCCCCCcccchhhhcccCCCCCCC-ccccchhhhhhhhhhhhccccceeEEEEe-cccc-----------ccc------
Q 004704          468 NGSKLNSPELDEEIEFGSLGNNRSS-NTMFGMWRWLSALEKRAAIDERVEIEFAM-KNRY-----------EIY------  528 (735)
Q Consensus       468 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~-----------~~~------  528 (735)
                      .+..+....-...+..-.+..+... ..+...+.......    ........+.+ .+..           ..+      
T Consensus       527 ~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  602 (768)
T 3rgz_A          527 SGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIA----ANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSE  602 (768)
T ss_dssp             EEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBC----CSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGG
T ss_pred             cCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhh----hhccccccccccccccccccccccccccccccccch
Confidence            2222111000000111111111110 01111110000000    00000000000 0000           000      


Q ss_pred             cCCcccccceEECCCCcccCCCCccccccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccCCccccCCCCC
Q 004704          529 NGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFL  608 (735)
Q Consensus       529 ~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L  608 (735)
                      ....++.+..++++.|.+.|.+|..++.+++|+.|+|++|+++|.+|..|+++++|+.|||++|+++|.+|..+.+++.|
T Consensus       603 ~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L  682 (768)
T 3rgz_A          603 QLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGL  682 (768)
T ss_dssp             GGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTC
T ss_pred             hhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCC
Confidence            01123445567788888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeEEcccCcCcccCCCC-CCCCccCCcccCCCCC
Q 004704          609 SIFNVSYNNLSGRTPDK-GQFATFDESSYRGNPS  641 (735)
Q Consensus       609 ~~L~ls~N~l~~~~p~~-~~~~~~~~~~~~gN~~  641 (735)
                      ++||||+|+++|.+|.. ..+..+....+.+|+.
T Consensus       683 ~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l  716 (768)
T 3rgz_A          683 NILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNL  716 (768)
T ss_dssp             CEEECCSSCCEECCCGGGGGCCCCSEEECCSSEE
T ss_pred             CEEECCCCcccCcCChHHhCCCCCCEEECcCCcc
Confidence            99999999999999973 5556667777777764

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=1.7e-61  Score=557.88  Aligned_cols=559  Identities=20%  Similarity=0.222  Sum_probs=308.8

Q ss_pred             CCCCCCCCccccccCCCCCCCEEeCCCCcCCCCcchhhhCCCCCCEEeCCCCcccccCChhhhhcCCCCCeeeccccccc
Q 004704            3 LERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNT   82 (735)
Q Consensus         3 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~~~~~   82 (735)
                      .++++++. +|..+.  +++++|+|++|.+++..+.+|+++++|++|++++|.+++..| ..|.++++|++|++++|.+.
T Consensus        11 cs~~~L~~-ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~   86 (680)
T 1ziw_A           11 CSHLKLTQ-VPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEP-ELCQKLPMLKVLNLQHNELS   86 (680)
T ss_dssp             CCSSCCSS-CCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCT-THHHHCTTCCEEECCSSCCC
T ss_pred             CCCCCccc-cccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCH-HHHhcccCcCEEECCCCccC
Confidence            34444442 343333  455555555555555444455555555555555555554333 34555555555555555433


Q ss_pred             ccccCCCCCCCCCeeEEEeeCCCCCCCCchhhhCCCCCCEEEccCCcCcccCchHHHhCCCCCcEEECcCCcCcccCcCC
Q 004704           83 LHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLP  162 (735)
Q Consensus        83 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~  162 (735)
                       .++..+|..+++|++|++++|++++..|..|.++++|++|++++|.+++..|..+ .++++|++|++++|.+++..+..
T Consensus        87 -~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~  164 (680)
T 1ziw_A           87 -QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQ-VQLENLQELLLSNNKIQALKSEE  164 (680)
T ss_dssp             -CCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSS-SCCTTCCEEECCSSCCCCBCHHH
T ss_pred             -ccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhh-cccccCCEEEccCCcccccCHHH
Confidence             3333345555555555555555555444555555555555555555553333322 34555555555555555544333


Q ss_pred             cC--CCCCcCEEEccCCcCCCcCChhHHHhcc---------------------------cCcEEECcCCcCCCCCCcccC
Q 004704          163 KA--KHDFLHHLDISCNNFRGKLPHNMGVILQ---------------------------KLMYMDISKNCFEGNIPYSAG  213 (735)
Q Consensus       163 ~~--~~~~L~~L~Ls~n~l~~~~~~~~~~~l~---------------------------~L~~L~L~~n~l~~~~~~~l~  213 (735)
                      +.  .+++|++|++++|.+++..|..+.. ++                           +|+.|++++|.+++..|..+.
T Consensus       165 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~  243 (680)
T 1ziw_A          165 LDIFANSSLKKLELSSNQIKEFSPGCFHA-IGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFL  243 (680)
T ss_dssp             HGGGTTCEESEEECTTCCCCCBCTTGGGG-SSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTG
T ss_pred             hhccccccccEEECCCCcccccChhhhhh-hhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhh
Confidence            22  3345555555555555333333322 34                           455555555555544444444


Q ss_pred             CCCC--CCEEECCCccccCccchhhhhCCCCCCEEEccCCCCCCcCcccccCCCCCCEEEccccccCc-----cccc---
Q 004704          214 EMKE--LSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSG-----KIKD---  283 (735)
Q Consensus       214 ~l~~--L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-----~~~~---  283 (735)
                      .++.  |++|++++|.+++ ++...+..+++|++|++++|.+.+..+..|..+++|+.|++++|...+     .+|.   
T Consensus       244 ~l~~~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~  322 (680)
T 1ziw_A          244 GLKWTNLTMLDLSYNNLNV-VGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDD  322 (680)
T ss_dssp             GGGGSCCCEEECTTSCCCE-ECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECT
T ss_pred             ccCcCCCCEEECCCCCcCc-cCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccCh
Confidence            4432  5555555555542 222223445555555555555554444455555555555555443221     1111   


Q ss_pred             -cccCCCCCCEEEeeCCccCCCCCchhhhhcccCcEEEcCCCcCCCC--CCccCCC--CCCCCEEEcccCCCCccCCCcc
Q 004704          284 -GLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGN--VPVQLNN--LERLRILDISENRLSGPIASSL  358 (735)
Q Consensus       284 -~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~--~~~~l~~--l~~L~~L~L~~n~l~~~~~~~~  358 (735)
                       .+..+++|++|++++|.+++..+..+..++. |++|++++|.+...  .+..|..  .++|+.|++++|++++..+..+
T Consensus       323 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~  401 (680)
T 1ziw_A          323 FSFQWLKCLEHLNMEDNDIPGIKSNMFTGLIN-LKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAF  401 (680)
T ss_dssp             TTTTTCTTCCEEECCSCCBCCCCTTTTTTCTT-CCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTT
T ss_pred             hhcccCCCCCEEECCCCccCCCChhHhccccC-CcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhh
Confidence             3444455555555555555444444444444 55555555543211  1111211  1345555555555554444433


Q ss_pred             -CCCCccEEEccCCcccccCc-ccccCCCCCcEEeCCCCcccccCChhhhCCCCccEEEccCCcCC--CCCchhhhcCCC
Q 004704          359 -NLSSVEHLSLQKNALNGLIP-GELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQ--GPIPDQLCQLQK  434 (735)
Q Consensus       359 -~l~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~  434 (735)
                       .+++|+.|++++|.+.+.+| ..+..+++|++|++++|++++..+..+..+++|+.|++++|.+.  +.+|..+..+++
T Consensus       402 ~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~  481 (680)
T 1ziw_A          402 SWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRN  481 (680)
T ss_dssp             TTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTT
T ss_pred             hCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCC
Confidence             45555555555555544333 34445555555555555555444445555555555555555543  234445555555


Q ss_pred             CCEEECcCCcCCCCCCchhhcccccccccCCccCCCCCCCcccchhhhcccCCCCCCCccccchhhhhhhhhhhhccccc
Q 004704          435 LAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDER  514 (735)
Q Consensus       435 L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  514 (735)
                      |+.|++++|++++..|..+.                                                            
T Consensus       482 L~~L~Ls~N~l~~i~~~~~~------------------------------------------------------------  501 (680)
T 1ziw_A          482 LTILDLSNNNIANINDDMLE------------------------------------------------------------  501 (680)
T ss_dssp             CCEEECCSSCCCCCCTTTTT------------------------------------------------------------
T ss_pred             CCEEECCCCCCCcCChhhhc------------------------------------------------------------
Confidence            55555555555433333332                                                            


Q ss_pred             eeEEEEeccccccccCCcccccceEECCCCcccCCC--------CccccccccCCeEeCCCCcCcccCcccccCcCCCCE
Q 004704          515 VEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEI--------PSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIES  586 (735)
Q Consensus       515 ~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~--------p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  586 (735)
                                       .+++|+.|++++|++++..        +..++.+++|++|+|++|+++...+..|+++++|+.
T Consensus       502 -----------------~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~  564 (680)
T 1ziw_A          502 -----------------GLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKI  564 (680)
T ss_dssp             -----------------TCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             -----------------cccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcce
Confidence                             2467889999999998542        223788999999999999999655567999999999


Q ss_pred             EeCCCCcccccCCccccCCCCCCeEEcccCcCcccCCCC-C-CCCccCCcccCCCCCCCCccc
Q 004704          587 LDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPDK-G-QFATFDESSYRGNPSLCAWLI  647 (735)
Q Consensus       587 LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~-~-~~~~~~~~~~~gN~~lc~~~~  647 (735)
                      |||++|++++..+..+..+++|+.|++++|++++..|.. . .+..+....+.||||.|+|..
T Consensus       565 L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~  627 (680)
T 1ziw_A          565 IDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES  627 (680)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred             eECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence            999999999877778899999999999999999887753 2 466777888999999999874

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=4.6e-57  Score=520.84  Aligned_cols=560  Identities=19%  Similarity=0.190  Sum_probs=412.5

Q ss_pred             CEEeCCCCcCCCCcchhhhCCCCCCEEeCCCCcccccCChhhhhcCCCCCeeecccccccccccCCCCCCCCCeeEEEee
Q 004704           23 KILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLT  102 (735)
Q Consensus        23 ~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~  102 (735)
                      +.+|.++++++ .+|..+.  +++++|++++|.+++ ++...|.++++|++|++++|.+.. +.+.++..+++|++|+|+
T Consensus         7 ~~~~cs~~~L~-~ip~~~~--~~l~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~   81 (680)
T 1ziw_A            7 EVADCSHLKLT-QVPDDLP--TNITVLNLTHNQLRR-LPAANFTRYSQLTSLDVGFNTISK-LEPELCQKLPMLKVLNLQ   81 (680)
T ss_dssp             SEEECCSSCCS-SCCSCSC--TTCSEEECCSSCCCC-CCGGGGGGGTTCSEEECCSSCCCC-CCTTHHHHCTTCCEEECC
T ss_pred             CeeECCCCCcc-ccccccC--CCCcEEECCCCCCCC-cCHHHHhCCCcCcEEECCCCccCc-cCHHHHhcccCcCEEECC
Confidence            67999999998 6776664  799999999999985 555789999999999999988754 444457789999999999


Q ss_pred             CCCCCCCCchhhhCCCCCCEEEccCCcCcccCchHHHhCCCCCcEEECcCCcCcccCcCCcCCCCCcCEEEccCCcCCCc
Q 004704          103 KCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGK  182 (735)
Q Consensus       103 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~  182 (735)
                      +|++++..+.+|.++++|++|++++|+++ .++...++++++|++|++++|.+++..+..+..+++|++|++++|.+++.
T Consensus        82 ~n~l~~l~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  160 (680)
T 1ziw_A           82 HNELSQLSDKTFAFCTNLTELHLMSNSIQ-KIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQAL  160 (680)
T ss_dssp             SSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCB
T ss_pred             CCccCccChhhhccCCCCCEEECCCCccC-ccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCccccc
Confidence            99999777778999999999999999998 55544456999999999999999999888999999999999999999855


Q ss_pred             CChhHHH-hcccCcEEECcCCcCCCCCCcccCCCCCCCEEECCCccccCccchhhh--hCCCCCCEEEccCCCCCCcCcc
Q 004704          183 LPHNMGV-ILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVV--TGCFSLELLDLSNNNFEGQFFS  259 (735)
Q Consensus       183 ~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~~  259 (735)
                      .+..+.. .+++|++|++++|.+++..|..+..+++|+.|+++++.+.+.....+.  -..++|++|++++|.+.+..+.
T Consensus       161 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~  240 (680)
T 1ziw_A          161 KSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNT  240 (680)
T ss_dssp             CHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTT
T ss_pred             CHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChh
Confidence            5544432 257999999999999988888888888888887777766532222111  1246777777777777776666


Q ss_pred             cccCCCC--CCEEEccccccCccccccccCCCCCCEEEeeCCccCCCCCchhhhhcccCcEEEcCCCcCCC-----CCCc
Q 004704          260 EYMNLTR--LRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEG-----NVPV  332 (735)
Q Consensus       260 ~~~~l~~--L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~-----~~~~  332 (735)
                      .|..++.  |++|++++|.+++..+..+..+++|++|++++|.+++..|..+..++. |+.|++++|...+     .+|.
T Consensus       241 ~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~L~~~~~~~~~~~~~lp~  319 (680)
T 1ziw_A          241 TFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFN-VRYLNLKRSFTKQSISLASLPK  319 (680)
T ss_dssp             TTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTT-CCEEECTTCBCCC------CCE
T ss_pred             HhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCC-ccEEeccchhhhcccccccccc
Confidence            6666644  777777777777666667777777777777777777666666666665 7777777664432     1222


Q ss_pred             ----cCCCCCCCCEEEcccCCCCccCCCcc-CCCCccEEEccCCcccc--cCcccccC--CCCCcEEeCCCCcccccCCh
Q 004704          333 ----QLNNLERLRILDISENRLSGPIASSL-NLSSVEHLSLQKNALNG--LIPGELFR--SCKLVTLNLRDNTFSGRIPH  403 (735)
Q Consensus       333 ----~l~~l~~L~~L~L~~n~l~~~~~~~~-~l~~L~~L~l~~n~l~~--~~~~~~~~--~~~L~~L~l~~n~l~~~~~~  403 (735)
                          .|..+++|++|++++|.+.+..+..+ ++++|++|++++|.+..  ..+..+..  .++|+.|++++|++++..|.
T Consensus       320 i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~  399 (680)
T 1ziw_A          320 IDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESD  399 (680)
T ss_dssp             ECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTT
T ss_pred             cChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChh
Confidence                56677777777777777776666555 67777777777776432  22222322  24677777777777766677


Q ss_pred             hhhCCCCccEEEccCCcCCCCCc-hhhhcCCCCCEEECcCCcCCCCCCchhhcccccccccCCccCCCCCCCcccchhhh
Q 004704          404 QINEHSNLRFLLLGGNHLQGPIP-DQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIE  482 (735)
Q Consensus       404 ~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~  482 (735)
                      ++..+++|++|++++|.+.+.+| ..+..+++|+.|++++|++++..+..+..++.++......                
T Consensus       400 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~----------------  463 (680)
T 1ziw_A          400 AFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRR----------------  463 (680)
T ss_dssp             TTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTT----------------
T ss_pred             hhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhcc----------------
Confidence            77777777777777777765444 5667777777777777777666666665544333211000                


Q ss_pred             cccCCCCCCCccccchhhhhhhhhhhhccccceeEEEEeccccccccCCcccccceEECCCCcccCCCCccccccccCCe
Q 004704          483 FGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILA  562 (735)
Q Consensus       483 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~  562 (735)
                            +.....                             .........+++|+.|++++|++++..|..|+.+++|++
T Consensus       464 ------n~l~~~-----------------------------~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~  508 (680)
T 1ziw_A          464 ------VALKNV-----------------------------DSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEI  508 (680)
T ss_dssp             ------SCCBCT-----------------------------TCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             ------cccccc-----------------------------ccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCE
Confidence                  000000                             000000124578999999999999877888999999999


Q ss_pred             EeCCCCcCcccCc--------ccccCcCCCCEEeCCCCcccccCCccccCCCCCCeEEcccCcCcccCCCC-CCCCccCC
Q 004704          563 LNLSNNSLSGSIP--------ESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPDK-GQFATFDE  633 (735)
Q Consensus       563 L~Ls~N~l~~~~p--------~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~-~~~~~~~~  633 (735)
                      |+|++|++++..+        ..|+++++|++|||++|+++...+..|.++++|+.|++++|++++..|.. ..+..+..
T Consensus       509 L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~  588 (680)
T 1ziw_A          509 LDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKS  588 (680)
T ss_dssp             EECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             EeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCE
Confidence            9999999996532        24899999999999999999655567999999999999999999766653 45566777


Q ss_pred             cccCCCC
Q 004704          634 SSYRGNP  640 (735)
Q Consensus       634 ~~~~gN~  640 (735)
                      ..+.+|.
T Consensus       589 L~L~~N~  595 (680)
T 1ziw_A          589 LNLQKNL  595 (680)
T ss_dssp             EECTTSC
T ss_pred             EECCCCc
Confidence            7777774

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=1.9e-57  Score=533.80  Aligned_cols=533  Identities=19%  Similarity=0.203  Sum_probs=261.9

Q ss_pred             CCCCCCCCccccccCCCCCCCEEeCCCCcCCCCcchhhhCCCCCCEEeCCCCcccccCChhhhhcCCCCCeeeccccccc
Q 004704            3 LERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNT   82 (735)
Q Consensus         3 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~~~~~   82 (735)
                      .++++++. +|.   -.++|++|||++|.+++..|.+|.++++|++|||++|.+.+.++..+|.++++|++|+|++|.+.
T Consensus        11 cs~~~L~~-vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~   86 (844)
T 3j0a_A           11 YRFCNLTQ-VPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIY   86 (844)
T ss_dssp             ESCCCSSC-CCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCC
T ss_pred             ccCCCCCC-CCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCc
Confidence            34555554 343   34566777777777766666666677777777776665545554455666666666666555543


Q ss_pred             ccccCCCCCCCCCeeEEEeeCCCCCCCCchh--hhCCCCCCEEEccCCcCcccCchHHHhCCCCCcEEECcCCcCcccCc
Q 004704           83 LHVKTENWLPTSQLIVLGLTKCNLNGSYPDF--LLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQ  160 (735)
Q Consensus        83 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~--l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~  160 (735)
                      .. .+..|..+++|++|+|++|.+++..|..  +.++++|++|+|++|.+++..+...++++++|++|++++|.+++..+
T Consensus        87 ~~-~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~  165 (844)
T 3j0a_A           87 FL-HPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCE  165 (844)
T ss_dssp             EE-CTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCS
T ss_pred             cc-CHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCH
Confidence            22 2223445555555555555555433332  45555555555555555433332223345555555555555544444


Q ss_pred             CCcCCC--CCcCEEEccCCcCCCcCChhHHHhcc------cCcEEECcCCcCCCCCCcccCC---CCCCCEEECCCcccc
Q 004704          161 LPKAKH--DFLHHLDISCNNFRGKLPHNMGVILQ------KLMYMDISKNCFEGNIPYSAGE---MKELSLLDLSRNYFS  229 (735)
Q Consensus       161 ~~~~~~--~~L~~L~Ls~n~l~~~~~~~~~~~l~------~L~~L~L~~n~l~~~~~~~l~~---l~~L~~L~L~~n~l~  229 (735)
                      ..+..+  ++|+.|++++|.+.+..|..+.. ++      .|++|++++|.+++..+..+..   ..+++.+.++.+...
T Consensus       166 ~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~-~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~  244 (844)
T 3j0a_A          166 HELEPLQGKTLSFFSLAANSLYSRVSVDWGK-CMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMG  244 (844)
T ss_dssp             GGGHHHHHCSSCCCEECCSBSCCCCCCCCCS-SSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCB
T ss_pred             HHcccccCCccceEECCCCccccccccchhh-cCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccc
Confidence            444433  44455555555444444333222 11      2444444444444433333321   133444444321111


Q ss_pred             CccchhhhhCCCCCCEEEccCCCCCCcCcccccCC--CCCCEEEccccccCccccccccCCCCCCEEEeeCCccCCCCCc
Q 004704          230 GGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNL--TRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPH  307 (735)
Q Consensus       230 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~  307 (735)
                      ..                +..+.+.+.....|..+  ++|+.|++++|.+.+..+..+..+++|+.|++++|.+++..|.
T Consensus       245 ~~----------------~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~  308 (844)
T 3j0a_A          245 AG----------------FGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADE  308 (844)
T ss_dssp             CS----------------SSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTT
T ss_pred             cc----------------ccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChH
Confidence            00                00112222222233332  4455555555555544455555555555555555555544444


Q ss_pred             hhhhhcccCcEEEcCCCcCCCCCCccCCCCCCCCEEEcccCCCCccCCCcc-CCCCccEEEccCCcccccCcccccCCCC
Q 004704          308 WMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSL-NLSSVEHLSLQKNALNGLIPGELFRSCK  386 (735)
Q Consensus       308 ~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~  386 (735)
                      .+..++. |++|++++|.+++..|..|..+++|++|++++|.+.+..+..+ .+++|+.|++++|.+++.     ..+++
T Consensus       309 ~~~~l~~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~  382 (844)
T 3j0a_A          309 AFYGLDN-LQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HFIPS  382 (844)
T ss_dssp             TTTTCSS-CCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-----SSCCS
T ss_pred             HhcCCCC-CCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-----cCCCC
Confidence            4444444 5555555555554445555555555555555555554444433 455555555555555432     12445


Q ss_pred             CcEEeCCCCcccccCChhhhCCCCccEEEccCCcCCCCC-chhhhcCCCCCEEECcCCcCCCCCCchhhcccccccccCC
Q 004704          387 LVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPI-PDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDD  465 (735)
Q Consensus       387 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~  465 (735)
                      |+.|++++|+++ .+|..   ..+++.|++++|.+.+.. +..+.++++|+.|++++|++++..+....           
T Consensus       383 L~~L~l~~N~l~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-----------  447 (844)
T 3j0a_A          383 IPDIFLSGNKLV-TLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTP-----------  447 (844)
T ss_dssp             CSEEEEESCCCC-CCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSS-----------
T ss_pred             cchhccCCCCcc-ccccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCccccccccccc-----------
Confidence            555555555555 33322   234555555555555321 12234555555566655555533221100           


Q ss_pred             ccCCCCCCCcccchhhhcccCCCCCCCccccchhhhhhhhhhhhccccceeEEEEeccccccccCCcccccceEECCCCc
Q 004704          466 VLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQ  545 (735)
Q Consensus       466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~  545 (735)
                                                                                       ..+++|+.|+|++|.
T Consensus       448 -----------------------------------------------------------------~~~~~L~~L~Ls~N~  462 (844)
T 3j0a_A          448 -----------------------------------------------------------------SENPSLEQLFLGENM  462 (844)
T ss_dssp             -----------------------------------------------------------------CSCTTCCBCEEESCC
T ss_pred             -----------------------------------------------------------------ccCCccccccCCCCc
Confidence                                                                             012345555555555


Q ss_pred             cc-----CCCCccccccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccCCccccCCCCCCeEEcccCcCcc
Q 004704          546 LT-----GEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSG  620 (735)
Q Consensus       546 l~-----~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~  620 (735)
                      ++     +..|..|..+++|+.|+|++|++++.+|..|.++++|+.|||++|++++..|..+.  ++|+.||+++|++++
T Consensus       463 l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~  540 (844)
T 3j0a_A          463 LQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLA  540 (844)
T ss_dssp             CSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCC
T ss_pred             cccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCC
Confidence            54     22334455555666666666666655555556666666666666666554444444  556666666666665


Q ss_pred             cCCCCCCCCccCCcccCCCCCCCCccc
Q 004704          621 RTPDKGQFATFDESSYRGNPSLCAWLI  647 (735)
Q Consensus       621 ~~p~~~~~~~~~~~~~~gN~~lc~~~~  647 (735)
                      .+|..  +..+....+.|||+.|+|++
T Consensus       541 ~~~~~--~~~L~~l~l~~Np~~C~c~~  565 (844)
T 3j0a_A          541 PNPDV--FVSLSVLDITHNKFICECEL  565 (844)
T ss_dssp             CCSCC--CSSCCEEEEEEECCCCSSSC
T ss_pred             CChhH--hCCcCEEEecCCCccccccc
Confidence            55532  33444455556666665543

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=6.8e-57  Score=529.16  Aligned_cols=511  Identities=21%  Similarity=0.228  Sum_probs=422.6

Q ss_pred             CEEeCCCCcCCCCcchhhhCCCCCCEEeCCCCcccccCChhhhhcCCCCCeeecccccccccccCCCCCCCCCeeEEEee
Q 004704           23 KILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLT  102 (735)
Q Consensus        23 ~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~  102 (735)
                      +..|.++++++ .+|.   -.++|++|||++|.+++..| ..|.++++|++|++++|.....+++.+|..+++|++|+|+
T Consensus         7 ~~~dcs~~~L~-~vP~---lp~~l~~LdLs~N~i~~i~~-~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls   81 (844)
T 3j0a_A            7 RIAFYRFCNLT-QVPQ---VLNTTERLLLSFNYIRTVTA-SSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG   81 (844)
T ss_dssp             EEEEESCCCSS-CCCS---SCTTCCEEEEESCCCCEECS-SSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECT
T ss_pred             eEEEccCCCCC-CCCC---CCCCcCEEECCCCcCCccCh-hHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECC
Confidence            46788899999 5665   45899999999999986655 6799999999999999988888888889999999999999


Q ss_pred             CCCCCCCCchhhhCCCCCCEEEccCCcCcccCchH-HHhCCCCCcEEECcCCcCcccCc-CCcCCCCCcCEEEccCCcCC
Q 004704          103 KCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTW-LLRNNPKLEVLLLKNNSFSGILQ-LPKAKHDFLHHLDISCNNFR  180 (735)
Q Consensus       103 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~-~~~~l~~L~~L~L~~n~l~~~~~-~~~~~~~~L~~L~Ls~n~l~  180 (735)
                      +|++.+..|.+|.++++|++|+|++|.+++.+|.. .++++++|++|++++|.+++..+ ..+.++++|++|++++|.++
T Consensus        82 ~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~  161 (844)
T 3j0a_A           82 SSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF  161 (844)
T ss_dssp             TCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCC
T ss_pred             CCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCC
Confidence            99999999999999999999999999998766653 35689999999999999998765 46899999999999999999


Q ss_pred             CcCChhHHHhc--ccCcEEECcCCcCCCCCCcccCCCCC------CCEEECCCccccCccchhhhhCC--CCCCEEEccC
Q 004704          181 GKLPHNMGVIL--QKLMYMDISKNCFEGNIPYSAGEMKE------LSLLDLSRNYFSGGLSQSVVTGC--FSLELLDLSN  250 (735)
Q Consensus       181 ~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~l~~l~~------L~~L~L~~n~l~~~~~~~~~~~l--~~L~~L~L~~  250 (735)
                      +..+..+.. +  ++|+.|+++.|.+.+..|..++.+++      |+.|++++|.+++.++..+....  ..++.+.++.
T Consensus       162 ~~~~~~l~~-l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~  240 (844)
T 3j0a_A          162 LVCEHELEP-LQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAH  240 (844)
T ss_dssp             CCCSGGGHH-HHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCS
T ss_pred             eeCHHHccc-ccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccc
Confidence            777777765 4  79999999999999888887776665      89999999988877766654332  4677777775


Q ss_pred             CCCCCcCcccccCCCCCCEEEccccccCccccccccCC--CCCCEEEeeCCccCCCCCchhhhhcccCcEEEcCCCcCCC
Q 004704          251 NNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSS--TSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEG  328 (735)
Q Consensus       251 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~--~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~  328 (735)
                      +.+...               +..+.+.+.....+..+  ++|+.|++++|.+.+..|..+..++. |+.|++++|++++
T Consensus       241 ~~~~~~---------------~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~-L~~L~L~~n~i~~  304 (844)
T 3j0a_A          241 HIMGAG---------------FGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKD-LKVLNLAYNKINK  304 (844)
T ss_dssp             SCCBCS---------------SSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCC-CCEEEEESCCCCE
T ss_pred             cccccc---------------ccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCC-CCEEECCCCcCCC
Confidence            543311               12233443444455444  78999999999999777888888877 9999999999998


Q ss_pred             CCCccCCCCCCCCEEEcccCCCCccCCCcc-CCCCccEEEccCCcccccCcccccCCCCCcEEeCCCCcccccCChhhhC
Q 004704          329 NVPVQLNNLERLRILDISENRLSGPIASSL-NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINE  407 (735)
Q Consensus       329 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~  407 (735)
                      ..|..|.++++|++|++++|.+++..+..+ .+++|+.|++++|.+.+..+..|..+++|++|++++|.+++ ++    .
T Consensus       305 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-i~----~  379 (844)
T 3j0a_A          305 IADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT-IH----F  379 (844)
T ss_dssp             ECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC-CS----S
T ss_pred             CChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCc-cc----C
Confidence            889999999999999999999998877766 89999999999999998888889999999999999999984 32    3


Q ss_pred             CCCccEEEccCCcCCCCCchhhhcCCCCCEEECcCCcCCCCCCchhhcccccccccCCccCCCCCCCcccchhhhcccCC
Q 004704          408 HSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLG  487 (735)
Q Consensus       408 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  487 (735)
                      +++|+.|++++|+++ .+|..   ..+++.|++++|++++.....+.                                 
T Consensus       380 ~~~L~~L~l~~N~l~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~~---------------------------------  422 (844)
T 3j0a_A          380 IPSIPDIFLSGNKLV-TLPKI---NLTANLIHLSENRLENLDILYFL---------------------------------  422 (844)
T ss_dssp             CCSCSEEEEESCCCC-CCCCC---CTTCCEEECCSCCCCSSTTHHHH---------------------------------
T ss_pred             CCCcchhccCCCCcc-ccccc---ccccceeecccCccccCchhhhh---------------------------------
Confidence            789999999999998 55553   46799999999999853221110                                 


Q ss_pred             CCCCCccccchhhhhhhhhhhhccccceeEEEEeccccccccCCcccccceEECCCCcccCCCCc-cccccccCCeEeCC
Q 004704          488 NNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPS-DIGQLQAILALNLS  566 (735)
Q Consensus       488 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~-~l~~l~~L~~L~Ls  566 (735)
                                                                 ..+++|+.|+|++|++++..+. .+..+++|+.|+|+
T Consensus       423 -------------------------------------------~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls  459 (844)
T 3j0a_A          423 -------------------------------------------LRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLG  459 (844)
T ss_dssp             -------------------------------------------TTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEE
T ss_pred             -------------------------------------------hcCCccceeeCCCCcccccccccccccCCccccccCC
Confidence                                                       1246889999999999965443 46678999999999


Q ss_pred             CCcCc-----ccCcccccCcCCCCEEeCCCCcccccCCccccCCCCCCeEEcccCcCcccCCCCCCCCccCCcccCCCCC
Q 004704          567 NNSLS-----GSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPDKGQFATFDESSYRGNPS  641 (735)
Q Consensus       567 ~N~l~-----~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~gN~~  641 (735)
                      +|.++     +..|..|.++++|+.|||++|++++.+|..+..+++|+.|++++|++++.+|.... ..+....+.+|..
T Consensus       460 ~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~-~~L~~L~Ls~N~l  538 (844)
T 3j0a_A          460 ENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP-ANLEILDISRNQL  538 (844)
T ss_dssp             SCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC-SCCCEEEEEEECC
T ss_pred             CCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh-ccccEEECCCCcC
Confidence            99997     45567799999999999999999999999999999999999999999987775433 4555555555543

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=4.1e-57  Score=514.28  Aligned_cols=530  Identities=22%  Similarity=0.226  Sum_probs=386.4

Q ss_pred             cCCCCCCCCccccccCCCCCCCEEeCCCCcCCCCcchhhhCCCCCCEEeCCCCcccccCChhhhhcCCCCCeeecccccc
Q 004704            2 NLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNN   81 (735)
Q Consensus         2 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~~~~   81 (735)
                      |.++.+++ .+|..+..  ++++|+|++|.+++..|.+|+++++|++|++++|++++..| .+|.++++|++|++++|.+
T Consensus        18 ~c~~~~l~-~iP~~l~~--~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~Ls~n~l   93 (606)
T 3t6q_A           18 NCENLGLN-EIPGTLPN--STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHE-DTFQSQHRLDTLVLTANPL   93 (606)
T ss_dssp             ECTTSCCS-SCCTTSCT--TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECT-TTTTTCTTCCEEECTTCCC
T ss_pred             ECCCCCcc-cCcCCCCC--cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeCh-hhccCccccCeeeCCCCcc
Confidence            34455555 45665553  68888888888887778888888888888888888876555 5688888888888887776


Q ss_pred             cccccCCCCCCCCCeeEEEeeCCCCCCCCchhhhCCCCCCEEEccCCcCccc-CchHHHhCCCCCcEEECcCCcCcccCc
Q 004704           82 TLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGN-FPTWLLRNNPKLEVLLLKNNSFSGILQ  160 (735)
Q Consensus        82 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~p~~~~~~l~~L~~L~L~~n~l~~~~~  160 (735)
                      ... .+..+..+++|++|++++|++++..+..+.++++|++|++++|++++. .|.. . .+++|++|++++|.+++..+
T Consensus        94 ~~~-~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~-~l~~L~~L~L~~n~l~~~~~  170 (606)
T 3t6q_A           94 IFM-AETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKG-F-PTEKLKVLDFQNNAIHYLSK  170 (606)
T ss_dssp             SEE-CTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTT-C-CCTTCCEEECCSSCCCEECH
T ss_pred             ccc-ChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccc-c-CCcccCEEEcccCcccccCh
Confidence            543 334577778888888888888876677778888888888888887742 2332 2 47788888888888877777


Q ss_pred             CCcCCCCCcC--EEEccCCcCCCcCChhHHHhcccCcEEECcCCcCCCCCCcccCCCCCCCEEECCCcccc----Cccch
Q 004704          161 LPKAKHDFLH--HLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFS----GGLSQ  234 (735)
Q Consensus       161 ~~~~~~~~L~--~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~----~~~~~  234 (735)
                      ..+..+++|+  +|++++|.+++..|.. +. ..+|++|++++|.   .++..+..+++++...+....+.    ..++.
T Consensus       171 ~~~~~l~~L~~l~L~l~~n~l~~~~~~~-~~-~~~L~~L~l~~~~---~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~  245 (606)
T 3t6q_A          171 EDMSSLQQATNLSLNLNGNDIAGIEPGA-FD-SAVFQSLNFGGTQ---NLLVIFKGLKNSTIQSLWLGTFEDMDDEDISP  245 (606)
T ss_dssp             HHHHTTTTCCSEEEECTTCCCCEECTTT-TT-TCEEEEEECTTCS---CHHHHHHHTTTCEEEEEECCCCTTSCCCCCCG
T ss_pred             hhhhhhcccceeEEecCCCccCccChhH-hh-hccccccccCCch---hHHHHhhhccccchhheechhhccccccccCh
Confidence            7777777777  7788888877544443 33 3577888887775   23333444444433333222111    12333


Q ss_pred             hhhhCCC--CCCEEEccCCCCCCcCcccccCCCCCCEEEccccccCccccccccCCCCCCEEEeeCCccCCCCCchhhhh
Q 004704          235 SVVTGCF--SLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNF  312 (735)
Q Consensus       235 ~~~~~l~--~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~  312 (735)
                      ..+.++.  +|++|++++|.+++..+..|..+++|++|++++|.++ .+|..+..+++|++|++++|.+++..|..+..+
T Consensus       246 ~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l  324 (606)
T 3t6q_A          246 AVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNF  324 (606)
T ss_dssp             GGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGC
T ss_pred             hHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhcc
Confidence            3333333  6888888888888777777888888888888888887 677778888888888888888886667777777


Q ss_pred             cccCcEEEcCCCcCCCCCCc-cCCCCCCCCEEEcccCCCCccC--CCcc-CCCCccEEEccCCcccccCcccccCCCCCc
Q 004704          313 SSELEILSMSKNHLEGNVPV-QLNNLERLRILDISENRLSGPI--ASSL-NLSSVEHLSLQKNALNGLIPGELFRSCKLV  388 (735)
Q Consensus       313 ~~~L~~L~l~~n~l~~~~~~-~l~~l~~L~~L~L~~n~l~~~~--~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~  388 (735)
                      +. |++|++++|.+.+.+|. .+..+++|++|++++|.+.+..  +..+ .+++|++|++++|.+.+..|..+..+++|+
T Consensus       325 ~~-L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  403 (606)
T 3t6q_A          325 PS-LTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLE  403 (606)
T ss_dssp             TT-CSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCS
T ss_pred             Cc-CCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCC
Confidence            76 88888888888755544 4788888888888888887654  3333 778888888888888877777888888888


Q ss_pred             EEeCCCCcccccCCh-hhhCCCCccEEEccCCcCCCCCchhhhcCCCCCEEECcCCcCCCCCC---chhhcccccccccC
Q 004704          389 TLNLRDNTFSGRIPH-QINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIP---PCFANVLSWRVGSD  464 (735)
Q Consensus       389 ~L~l~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p---~~~~~l~~l~~~~~  464 (735)
                      .|++++|++++..+. .+..+++|++|++++|.+.+..|..+..+++|+.|++++|++++...   ..+.          
T Consensus       404 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~----------  473 (606)
T 3t6q_A          404 LLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQ----------  473 (606)
T ss_dssp             EEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGG----------
T ss_pred             eEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhc----------
Confidence            888888888766543 47778888888888888887777778888888888888888764211   1111          


Q ss_pred             CccCCCCCCCcccchhhhcccCCCCCCCccccchhhhhhhhhhhhccccceeEEEEeccccccccCCcccccceEECCCC
Q 004704          465 DVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCN  544 (735)
Q Consensus       465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N  544 (735)
                                                                                         .+++|+.|++++|
T Consensus       474 -------------------------------------------------------------------~l~~L~~L~Ls~n  486 (606)
T 3t6q_A          474 -------------------------------------------------------------------TLGRLEILVLSFC  486 (606)
T ss_dssp             -------------------------------------------------------------------GCTTCCEEECTTS
T ss_pred             -------------------------------------------------------------------cCCCccEEECCCC
Confidence                                                                               2356777888888


Q ss_pred             cccCCCCccccccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccCCccccCCCCCCeEEcccCcCcccCC
Q 004704          545 QLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTP  623 (735)
Q Consensus       545 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p  623 (735)
                      ++++..|..|+.+++|+.|+|++|++++.+|+.|.+++.| .|||++|++++.+|..+..+++|+.|++++|+++|.++
T Consensus       487 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  564 (606)
T 3t6q_A          487 DLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS  564 (606)
T ss_dssp             CCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred             ccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence            8887777788888888888888888888888888888888 88888888887777777888888888888777776554

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=2e-55  Score=500.41  Aligned_cols=534  Identities=22%  Similarity=0.217  Sum_probs=451.3

Q ss_pred             CCEEeCCCCcCCCCcchhhhCCCCCCEEeCCCCcccccCChhhhhcCCCCCeeecccccccccccCCCCCCCCCeeEEEe
Q 004704           22 LKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGL  101 (735)
Q Consensus        22 L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L  101 (735)
                      -++++.++..++ .+|..+.  +.+++|++++|.+++..| ..|.++++|++|++++|.+.. +.+.+|..+++|++|+|
T Consensus        14 ~~~~~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~L   88 (606)
T 3t6q_A           14 NKTYNCENLGLN-EIPGTLP--NSTECLEFSFNVLPTIQN-TTFSRLINLTFLDLTRCQIYW-IHEDTFQSQHRLDTLVL   88 (606)
T ss_dssp             TTEEECTTSCCS-SCCTTSC--TTCCEEECTTCCCSEECT-TTSTTCTTCSEEECTTCCCCE-ECTTTTTTCTTCCEEEC
T ss_pred             CceEECCCCCcc-cCcCCCC--CcCcEEEccCCccCcCCh-hHhccCccceEEECCCCccce-eChhhccCccccCeeeC
Confidence            457899999888 6777665  479999999999986555 689999999999999987754 55566899999999999


Q ss_pred             eCCCCCCCCchhhhCCCCCCEEEccCCcCcccCchHHHhCCCCCcEEECcCCcCcccCcCCcCCCCCcCEEEccCCcCCC
Q 004704          102 TKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRG  181 (735)
Q Consensus       102 ~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~  181 (735)
                      ++|++++..|..+.++++|++|++++|+++ .++...+.++++|++|++++|.+++.....+..+++|++|++++|.+++
T Consensus        89 s~n~l~~~~~~~~~~l~~L~~L~L~~n~i~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  167 (606)
T 3t6q_A           89 TANPLIFMAETALSGPKALKHLFFIQTGIS-SIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHY  167 (606)
T ss_dssp             TTCCCSEECTTTTSSCTTCCEEECTTSCCS-CGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCE
T ss_pred             CCCcccccChhhhcccccccEeeccccCcc-cCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccc
Confidence            999999999999999999999999999998 4433335689999999999999998765566669999999999999995


Q ss_pred             cCChhHHHhcccCc--EEECcCCcCCCCCCcccCCCCCCCEEECCCccccCccchhhhhCCCCCCEEEccCCCCC-----
Q 004704          182 KLPHNMGVILQKLM--YMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFE-----  254 (735)
Q Consensus       182 ~~~~~~~~~l~~L~--~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~-----  254 (735)
                      ..|..+. .+++|+  .|++++|.+.+..|..+ ...+|+.|++++|..   ++. .+.++..+....+....+.     
T Consensus       168 ~~~~~~~-~l~~L~~l~L~l~~n~l~~~~~~~~-~~~~L~~L~l~~~~~---~~~-~~~~l~~~~l~~l~~~~~~~~~~~  241 (606)
T 3t6q_A          168 LSKEDMS-SLQQATNLSLNLNGNDIAGIEPGAF-DSAVFQSLNFGGTQN---LLV-IFKGLKNSTIQSLWLGTFEDMDDE  241 (606)
T ss_dssp             ECHHHHH-TTTTCCSEEEECTTCCCCEECTTTT-TTCEEEEEECTTCSC---HHH-HHHHTTTCEEEEEECCCCTTSCCC
T ss_pred             cChhhhh-hhcccceeEEecCCCccCccChhHh-hhccccccccCCchh---HHH-Hhhhccccchhheechhhcccccc
Confidence            4455454 488999  89999999997666554 457899999999862   233 3344555544444332222     


Q ss_pred             CcCcccccCCC--CCCEEEccccccCccccccccCCCCCCEEEeeCCccCCCCCchhhhhcccCcEEEcCCCcCCCCCCc
Q 004704          255 GQFFSEYMNLT--RLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPV  332 (735)
Q Consensus       255 ~~~~~~~~~l~--~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~  332 (735)
                      ...+..+..+.  +|+.|++++|.+++..+..+..+++|++|++++|.++ .+|..+..++. |++|++++|++.+..|.
T Consensus       242 ~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~-L~~L~l~~n~l~~~~~~  319 (606)
T 3t6q_A          242 DISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLST-LKKLVLSANKFENLCQI  319 (606)
T ss_dssp             CCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTT-CCEEECTTCCCSBGGGG
T ss_pred             ccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhccccc-CCEEECccCCcCcCchh
Confidence            22233444443  7999999999999888888999999999999999998 88988988887 99999999999988888


Q ss_pred             cCCCCCCCCEEEcccCCCCccCCCc-c-CCCCccEEEccCCcccccC--cccccCCCCCcEEeCCCCcccccCChhhhCC
Q 004704          333 QLNNLERLRILDISENRLSGPIASS-L-NLSSVEHLSLQKNALNGLI--PGELFRSCKLVTLNLRDNTFSGRIPHQINEH  408 (735)
Q Consensus       333 ~l~~l~~L~~L~L~~n~l~~~~~~~-~-~l~~L~~L~l~~n~l~~~~--~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l  408 (735)
                      .+..+++|++|++++|.+.+.++.. + .+++|++|++++|.+.+..  +..+..+++|++|++++|++++..|..+..+
T Consensus       320 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l  399 (606)
T 3t6q_A          320 SASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKEC  399 (606)
T ss_dssp             CGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTC
T ss_pred             hhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCC
Confidence            9999999999999999998666543 4 8999999999999998776  7788999999999999999998889999999


Q ss_pred             CCccEEEccCCcCCCCCch-hhhcCCCCCEEECcCCcCCCCCCchhhcccccccccCCccCCCCCCCcccchhhhcccCC
Q 004704          409 SNLRFLLLGGNHLQGPIPD-QLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLG  487 (735)
Q Consensus       409 ~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  487 (735)
                      ++|++|++++|.+.+..+. .+..+++|+.|++++|++++..|..+..                                
T Consensus       400 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--------------------------------  447 (606)
T 3t6q_A          400 PQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDG--------------------------------  447 (606)
T ss_dssp             TTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTT--------------------------------
T ss_pred             ccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhC--------------------------------
Confidence            9999999999999977654 4899999999999999998777766544                                


Q ss_pred             CCCCCccccchhhhhhhhhhhhccccceeEEEEeccccccccCCcccccceEECCCCcccCC---CCccccccccCCeEe
Q 004704          488 NNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGE---IPSDIGQLQAILALN  564 (735)
Q Consensus       488 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~---~p~~l~~l~~L~~L~  564 (735)
                                                                   +++|+.|++++|++++.   .+..++.+++|++|+
T Consensus       448 ---------------------------------------------l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~  482 (606)
T 3t6q_A          448 ---------------------------------------------LPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILV  482 (606)
T ss_dssp             ---------------------------------------------CTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEE
T ss_pred             ---------------------------------------------CCCCCEEECCCCCCCccccccchhhccCCCccEEE
Confidence                                                         36788999999999872   346799999999999


Q ss_pred             CCCCcCcccCcccccCcCCCCEEeCCCCcccccCCccccCCCCCCeEEcccCcCcccCCCC-CCCCccCCcccCCCCCCC
Q 004704          565 LSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPDK-GQFATFDESSYRGNPSLC  643 (735)
Q Consensus       565 Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~-~~~~~~~~~~~~gN~~lc  643 (735)
                      +++|++++.+|..|+++++|++|||++|++++.+|..+..++.| +|++++|++++.+|.. ..+..+....+.|||+.|
T Consensus       483 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  561 (606)
T 3t6q_A          483 LSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDC  561 (606)
T ss_dssp             CTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEEC
T ss_pred             CCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccc
Confidence            99999999999999999999999999999999999999999999 9999999999888863 455667788899999999


Q ss_pred             Cccc
Q 004704          644 AWLI  647 (735)
Q Consensus       644 ~~~~  647 (735)
                      +|+.
T Consensus       562 ~c~~  565 (606)
T 3t6q_A          562 TCSN  565 (606)
T ss_dssp             SGGG
T ss_pred             cCCc
Confidence            8864

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=2.2e-55  Score=500.10  Aligned_cols=532  Identities=19%  Similarity=0.188  Sum_probs=364.5

Q ss_pred             CEEeCCCCcCCCCcchhhhCCCCCCEEeCCCCcccccCChhhhhcCCCCCeeecccccccccccCCCCCCCCCeeEEEee
Q 004704           23 KILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLT  102 (735)
Q Consensus        23 ~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~  102 (735)
                      ++++.+++.++ .+|..+.  ++|++|++++|++++..+ ..|.++++|++|++++|.+. .+++.+|..+++|++|+|+
T Consensus        14 ~~~~c~~~~l~-~ip~~~~--~~l~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~-~i~~~~~~~l~~L~~L~Ls   88 (606)
T 3vq2_A           14 ITYQCMDQKLS-KVPDDIP--SSTKNIDLSFNPLKILKS-YSFSNFSELQWLDLSRCEIE-TIEDKAWHGLHHLSNLILT   88 (606)
T ss_dssp             TEEECTTSCCS-SCCTTSC--TTCCEEECTTSCCCEECT-TTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECT
T ss_pred             CceEccCCCcc-cCCCCCC--CCcCEEECCCCCcCEeCh-hhccCCccCcEEeCCCCccc-ccCHHHhhchhhcCEeECC
Confidence            45566666555 4444332  556666666666553333 44556666666666655443 2333345666666777777


Q ss_pred             CCCCCCCCchhhhCCCCCCEEEccCCcCcccCchHHHhCCCCCcEEECcCCcCcc-cCcCCcCCCCCcCEEEccCCcCCC
Q 004704          103 KCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSG-ILQLPKAKHDFLHHLDISCNNFRG  181 (735)
Q Consensus       103 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~~~~L~~L~Ls~n~l~~  181 (735)
                      +|++++..|.+|.++++|++|++++|.++ .++...++++++|++|++++|.+++ ..|..+.++++|++|++++|.+++
T Consensus        89 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~  167 (606)
T 3vq2_A           89 GNPIQSFSPGSFSGLTSLENLVAVETKLA-SLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQT  167 (606)
T ss_dssp             TCCCCCCCTTSSTTCTTCCEEECTTSCCC-CSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCE
T ss_pred             CCcccccChhhcCCcccCCEEEccCCccc-cccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCccee
Confidence            77777666777777777777777777776 3332224567777777777777765 346667777777777777777775


Q ss_pred             cCChhHHHhcccCc----EEECcCCcCCCCCCcccCCCCCCCEEECCCccccCccchhhhhCCCCCCEEEccCCCCCC--
Q 004704          182 KLPHNMGVILQKLM----YMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEG--  255 (735)
Q Consensus       182 ~~~~~~~~~l~~L~----~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~--  255 (735)
                      ..|..+.. +++|+    +|++++|.+++..+.. ....+|++|++++|.+.+...+..+.+++.|+.+++..+.+.+  
T Consensus       168 ~~~~~~~~-l~~L~~~l~~L~l~~n~l~~~~~~~-~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~  245 (606)
T 3vq2_A          168 ITVNDLQF-LRENPQVNLSLDMSLNPIDFIQDQA-FQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDER  245 (606)
T ss_dssp             ECTTTTHH-HHHCTTCCCEEECTTCCCCEECTTT-TTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSC
T ss_pred             cChhhhhh-hhccccccceeeccCCCcceeCccc-ccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCC
Confidence            44444443 44443    6777777777433333 3334777777777777654455555677777777765443321  


Q ss_pred             ----cCcccccCCC--CCCEEEc-cccccCccccccccCCCCCCEEEeeCCccCCCCCchhhhhcccCcEEEcCCCcCCC
Q 004704          256 ----QFFSEYMNLT--RLRHLYF-ENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEG  328 (735)
Q Consensus       256 ----~~~~~~~~l~--~L~~L~L-~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~  328 (735)
                          ..+..+..+.  +++.+++ ..+.+.+..|. +..+++|+.|++++|.+. .+| .+..++. |++|++++|.+ +
T Consensus       246 ~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~-~l~-~l~~~~~-L~~L~l~~n~l-~  320 (606)
T 3vq2_A          246 NLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIK-YLE-DVPKHFK-WQSLSIIRCQL-K  320 (606)
T ss_dssp             CCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCC-CCC-CCCTTCC-CSEEEEESCCC-S
T ss_pred             cccccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccch-hhh-hcccccc-CCEEEcccccC-c
Confidence                1112222222  3555666 56667766666 777888888888888886 566 6666665 88888888888 4


Q ss_pred             CCCccCCCCCCCCEEEcccCCCCccCCCccCCCCccEEEccCCccccc--CcccccCCCCCcEEeCCCCcccccCChhhh
Q 004704          329 NVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGL--IPGELFRSCKLVTLNLRDNTFSGRIPHQIN  406 (735)
Q Consensus       329 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~  406 (735)
                      .+| .+ .+++|++|++++|+..+.. ....+++|+.|++++|.+++.  .+..+..+++|++|++++|.+++ +|..+.
T Consensus       321 ~lp-~~-~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~  396 (606)
T 3vq2_A          321 QFP-TL-DLPFLKSLTLTMNKGSISF-KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFM  396 (606)
T ss_dssp             SCC-CC-CCSSCCEEEEESCSSCEEC-CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCT
T ss_pred             ccc-cC-CCCccceeeccCCcCccch-hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhcc
Confidence            666 44 7888888888888655443 333788888888888888765  36777888888888888888874 567788


Q ss_pred             CCCCccEEEccCCcCCCCCc-hhhhcCCCCCEEECcCCcCCCCCCchhhcccccccccCCccCCCCCCCcccchhhhccc
Q 004704          407 EHSNLRFLLLGGNHLQGPIP-DQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGS  485 (735)
Q Consensus       407 ~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  485 (735)
                      .+++|++|++++|.+.+..| ..+..+++|+.|++++|++++..|..+..+                             
T Consensus       397 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-----------------------------  447 (606)
T 3vq2_A          397 GLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGL-----------------------------  447 (606)
T ss_dssp             TCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTC-----------------------------
T ss_pred             CCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCC-----------------------------
Confidence            88888888888888887766 678888888888888888887666655442                             


Q ss_pred             CCCCCCCccccchhhhhhhhhhhhccccceeEEEEeccccccccCCcccccceEECCCCcccC-CCCccccccccCCeEe
Q 004704          486 LGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTG-EIPSDIGQLQAILALN  564 (735)
Q Consensus       486 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~-~~p~~l~~l~~L~~L~  564 (735)
                                                                      ++|+.|++++|++++ .+|..++.+++|++|+
T Consensus       448 ------------------------------------------------~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~  479 (606)
T 3vq2_A          448 ------------------------------------------------TSLNTLKMAGNSFKDNTLSNVFANTTNLTFLD  479 (606)
T ss_dssp             ------------------------------------------------TTCCEEECTTCEEGGGEECSCCTTCTTCCEEE
T ss_pred             ------------------------------------------------CCCCEEECCCCcCCCcchHHhhccCCCCCEEE
Confidence                                                            567778888888886 3678888888888888


Q ss_pred             CCCCcCcccCcccccCcCCCCEEeCCCCcccccCCccccCCCCCCeEEcccCcCcccCCCCCCCC-ccCCcccCCCCCCC
Q 004704          565 LSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPDKGQFA-TFDESSYRGNPSLC  643 (735)
Q Consensus       565 Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~-~~~~~~~~gN~~lc  643 (735)
                      |++|++++.+|..|+++++|++|+|++|++++.+|..+..+++|++|++++|+++...+....+. .+....+.|||+.|
T Consensus       480 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~~c  559 (606)
T 3vq2_A          480 LSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVAC  559 (606)
T ss_dssp             CTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSCCCCC
T ss_pred             CCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEEccCCCccc
Confidence            88888888888888888888888888888888888888888888888888888885444333333 36667788888888


Q ss_pred             Ccccc
Q 004704          644 AWLIQ  648 (735)
Q Consensus       644 ~~~~~  648 (735)
                      +|+..
T Consensus       560 ~c~~~  564 (606)
T 3vq2_A          560 ICEHQ  564 (606)
T ss_dssp             SSTTH
T ss_pred             CCccH
Confidence            77653

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=1.9e-54  Score=492.35  Aligned_cols=527  Identities=20%  Similarity=0.198  Sum_probs=450.7

Q ss_pred             cCCCCCCCCccccccCCCCCCCEEeCCCCcCCCCcchhhhCCCCCCEEeCCCCcccccCChhhhhcCCCCCeeecccccc
Q 004704            2 NLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNN   81 (735)
Q Consensus         2 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~~~~   81 (735)
                      +.++++++. +|..+.  +++++|+|++|.+++..+.+|+++++|++|++++|++++..| .+|.++++|++|++++|.+
T Consensus        17 ~c~~~~l~~-ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~-~~~~~l~~L~~L~Ls~n~l   92 (606)
T 3vq2_A           17 QCMDQKLSK-VPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIED-KAWHGLHHLSNLILTGNPI   92 (606)
T ss_dssp             ECTTSCCSS-CCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECT-TTTTTCTTCCEEECTTCCC
T ss_pred             EccCCCccc-CCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCH-HHhhchhhcCEeECCCCcc
Confidence            566777774 666555  899999999999998888899999999999999999986555 6799999999999999887


Q ss_pred             cccccCCCCCCCCCeeEEEeeCCCCCCCCchhhhCCCCCCEEEccCCcCcc-cCchHHHhCCCCCcEEECcCCcCcccCc
Q 004704           82 TLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVG-NFPTWLLRNNPKLEVLLLKNNSFSGILQ  160 (735)
Q Consensus        82 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~p~~~~~~l~~L~~L~L~~n~l~~~~~  160 (735)
                      .. +.+..+..+++|++|++++|.+++..+..++++++|++|++++|.+++ .+|..+ +++++|++|++++|.+++..+
T Consensus        93 ~~-~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~-~~l~~L~~L~Ls~n~l~~~~~  170 (606)
T 3vq2_A           93 QS-FSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYF-SNLTNLVHVDLSYNYIQTITV  170 (606)
T ss_dssp             CC-CCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGG-GTCTTCCEEECCSSCCCEECT
T ss_pred             cc-cChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhH-hhcCCCCEEEccCCcceecCh
Confidence            54 444568899999999999999998888889999999999999999985 568766 489999999999999999888


Q ss_pred             CCcCCCCCcC----EEEccCCcCCCcCChhHHHhcccCcEEECcCCcCC-CCCCcccCCCCCCCEEECCCccccC-----
Q 004704          161 LPKAKHDFLH----HLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFE-GNIPYSAGEMKELSLLDLSRNYFSG-----  230 (735)
Q Consensus       161 ~~~~~~~~L~----~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~-----  230 (735)
                      ..+..+.+|+    +|++++|.++ .++...+... +|++|++++|.+. +..|..+.+++.|+.+++..+.+.+     
T Consensus       171 ~~~~~l~~L~~~l~~L~l~~n~l~-~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~  248 (606)
T 3vq2_A          171 NDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLE  248 (606)
T ss_dssp             TTTHHHHHCTTCCCEEECTTCCCC-EECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCS
T ss_pred             hhhhhhhccccccceeeccCCCcc-eeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCccc
Confidence            8887766655    8999999998 6676666644 8999999999886 3567788999999998886554432     


Q ss_pred             ccchhhhhCCC--CCCEEEc-cCCCCCCcCcccccCCCCCCEEEccccccCccccccccCCCCCCEEEeeCCccCCCCCc
Q 004704          231 GLSQSVVTGCF--SLELLDL-SNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPH  307 (735)
Q Consensus       231 ~~~~~~~~~l~--~L~~L~L-~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~  307 (735)
                      .++...+.++.  .++.+++ ..|.+.+..+. +..+++|+.|++++|.+. .+| .+..+++|++|++++|.+ +.+|.
T Consensus       249 ~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~-~l~-~l~~~~~L~~L~l~~n~l-~~lp~  324 (606)
T 3vq2_A          249 IFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIK-YLE-DVPKHFKWQSLSIIRCQL-KQFPT  324 (606)
T ss_dssp             CCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCC-CCC-CCCTTCCCSEEEEESCCC-SSCCC
T ss_pred             ccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccch-hhh-hccccccCCEEEcccccC-ccccc
Confidence            12233333333  4667777 67788877776 899999999999999997 556 788999999999999999 58884


Q ss_pred             hhhhhcccCcEEEcCCCcCCCCCCccCCCCCCCCEEEcccCCCCccC--CCcc-CCCCccEEEccCCcccccCcccccCC
Q 004704          308 WMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPI--ASSL-NLSSVEHLSLQKNALNGLIPGELFRS  384 (735)
Q Consensus       308 ~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~--~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~  384 (735)
                       + .++. |++|++++|+..+..  .+..+++|++|++++|++++..  +..+ .+++|++|++++|.+.+ +|..+..+
T Consensus       325 -~-~l~~-L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l  398 (606)
T 3vq2_A          325 -L-DLPF-LKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGL  398 (606)
T ss_dssp             -C-CCSS-CCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTC
T ss_pred             -C-CCCc-cceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCC
Confidence             4 6766 999999999665433  6779999999999999998763  4444 89999999999999986 45889999


Q ss_pred             CCCcEEeCCCCcccccCC-hhhhCCCCccEEEccCCcCCCCCchhhhcCCCCCEEECcCCcCCCC-CCchhhcccccccc
Q 004704          385 CKLVTLNLRDNTFSGRIP-HQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGS-IPPCFANVLSWRVG  462 (735)
Q Consensus       385 ~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~l~~~  462 (735)
                      ++|+.|++++|++++..| ..+..+++|++|++++|.+.+..|..+..+++|++|++++|++++. +|..+..       
T Consensus       399 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-------  471 (606)
T 3vq2_A          399 EELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFAN-------  471 (606)
T ss_dssp             TTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTT-------
T ss_pred             CCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhcc-------
Confidence            999999999999998877 6899999999999999999998999999999999999999999863 5554443       


Q ss_pred             cCCccCCCCCCCcccchhhhcccCCCCCCCccccchhhhhhhhhhhhccccceeEEEEeccccccccCCcccccceEECC
Q 004704          463 SDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLS  542 (735)
Q Consensus       463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs  542 (735)
                                                                                            +++|+.|+++
T Consensus       472 ----------------------------------------------------------------------l~~L~~L~Ls  481 (606)
T 3vq2_A          472 ----------------------------------------------------------------------TTNLTFLDLS  481 (606)
T ss_dssp             ----------------------------------------------------------------------CTTCCEEECT
T ss_pred             ----------------------------------------------------------------------CCCCCEEECC
Confidence                                                                                  3678899999


Q ss_pred             CCcccCCCCccccccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccCCccccCCC-CCCeEEcccCcCccc
Q 004704          543 CNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALN-FLSIFNVSYNNLSGR  621 (735)
Q Consensus       543 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~-~L~~L~ls~N~l~~~  621 (735)
                      +|++++..|..++.+++|++|+|++|++++.+|..|+++++|++|||++|+++ .+|..+..++ +|++|++++|++.+.
T Consensus       482 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~  560 (606)
T 3vq2_A          482 KCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACI  560 (606)
T ss_dssp             TSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCS
T ss_pred             CCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccC
Confidence            99999999999999999999999999999999999999999999999999999 6888899997 599999999999998


Q ss_pred             CCC
Q 004704          622 TPD  624 (735)
Q Consensus       622 ~p~  624 (735)
                      ++.
T Consensus       561 c~~  563 (606)
T 3vq2_A          561 CEH  563 (606)
T ss_dssp             STT
T ss_pred             Ccc
Confidence            774

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=4.8e-50  Score=452.99  Aligned_cols=492  Identities=20%  Similarity=0.219  Sum_probs=348.2

Q ss_pred             CCCCEEeCCCCcCCCCcchhhhCCCCCCEEeCCCCcccccCChhhhhcCCCCCeeecccccccccccCCCCCCCCCeeEE
Q 004704           20 TRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVL   99 (735)
Q Consensus        20 ~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L   99 (735)
                      +++++|+|++|++++..+.+|+++++|++|++++|++++..+ ..|.++++|++|++                       
T Consensus        28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~-~~~~~l~~L~~L~L-----------------------   83 (570)
T 2z63_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED-GAYQSLSHLSTLIL-----------------------   83 (570)
T ss_dssp             SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECT-TTTTTCTTCCEEEC-----------------------
T ss_pred             ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCc-ccccCchhCCEEeC-----------------------
Confidence            456677777777666656666667777777777666654322 34555555555554                       


Q ss_pred             EeeCCCCCCCCchhhhCCCCCCEEEccCCcCcccCchHHHhCCCCCcEEECcCCcCccc-CcCCcCCCCCcCEEEccCCc
Q 004704          100 GLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGI-LQLPKAKHDFLHHLDISCNN  178 (735)
Q Consensus       100 ~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~~~~L~~L~Ls~n~  178 (735)
                        ++|++++..|.+|.++++|++|++++|+++ .++...++++++|++|++++|.+++. .|..+.++++|++|++++|.
T Consensus        84 --~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~  160 (570)
T 2z63_A           84 --TGNPIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK  160 (570)
T ss_dssp             --TTCCCCEECTTTTTTCTTCCEEECTTSCCC-CSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSC
T ss_pred             --cCCcCCccCHhhhcCccccccccccccccc-cCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCc
Confidence              455555444555556666666666666555 33332234556666666666665553 35556666666666666666


Q ss_pred             CCCcCChhHHHhcccC----cEEECcCCcCCCCCCcccCCCCCCCEEECCCccccCccchhhhhCCCCCCEEEccCCCCC
Q 004704          179 FRGKLPHNMGVILQKL----MYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFE  254 (735)
Q Consensus       179 l~~~~~~~~~~~l~~L----~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~  254 (735)
                      +++..+..+.. +++|    +.+++++|.+.+..|..+... +|+.|++++|..........+.++..++...+....+.
T Consensus       161 l~~~~~~~~~~-l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~  238 (570)
T 2z63_A          161 IQSIYCTDLRV-LHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFR  238 (570)
T ss_dssp             CCEECGGGGHH-HHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECC
T ss_pred             cceecHHHccc-hhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeecccccc
Confidence            66433333333 5555    666677766665555544443 57777776665443333334455666665554332211


Q ss_pred             ------CcCcccccCCC--CCCEEEcccc-ccCccccccccCCCCCCEEEeeCCccCCCCCchhhhhcccCcEEEcCCCc
Q 004704          255 ------GQFFSEYMNLT--RLRHLYFENN-NFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNH  325 (735)
Q Consensus       255 ------~~~~~~~~~l~--~L~~L~L~~n-~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~  325 (735)
                            ......+..++  .++.++++++ .+.+..+..+..+++|++|++++|.++ .+|..+... . |++|++++|.
T Consensus       239 ~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~-L~~L~l~~n~  315 (570)
T 2z63_A          239 NEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-G-WQHLELVNCK  315 (570)
T ss_dssp             CCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-C-CSEEEEESCB
T ss_pred             CchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-C-ccEEeeccCc
Confidence                  11112222222  3566777776 666677788888889999999998887 678877777 4 9999999998


Q ss_pred             CCCCCCccCCCCCCCCEEEcccCCCCccCCCccCCCCccEEEccCCcccccC--cccccCCCCCcEEeCCCCcccccCCh
Q 004704          326 LEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLI--PGELFRSCKLVTLNLRDNTFSGRIPH  403 (735)
Q Consensus       326 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~~~~L~~L~l~~n~l~~~~~~  403 (735)
                      +. .+|.  ..+++|++|++++|.+.+..+. ..+++|++|++++|.+++..  +..+..+++|++|++++|.+++..+ 
T Consensus       316 ~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-  390 (570)
T 2z63_A          316 FG-QFPT--LKLKSLKRLTFTSNKGGNAFSE-VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS-  390 (570)
T ss_dssp             CS-SCCB--CBCSSCCEEEEESCBSCCBCCC-CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEE-
T ss_pred             cc-ccCc--ccccccCEEeCcCCcccccccc-ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccc-
Confidence            88 4554  4678899999999988766554 57889999999999988654  6778889999999999999985544 


Q ss_pred             hhhCCCCccEEEccCCcCCCCCc-hhhhcCCCCCEEECcCCcCCCCCCchhhcccccccccCCccCCCCCCCcccchhhh
Q 004704          404 QINEHSNLRFLLLGGNHLQGPIP-DQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIE  482 (735)
Q Consensus       404 ~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~  482 (735)
                      .+..+++|++|++++|.+.+..+ ..+..+++|+.|++++|++++..|..+..                           
T Consensus       391 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~---------------------------  443 (570)
T 2z63_A          391 NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG---------------------------  443 (570)
T ss_dssp             EEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTT---------------------------
T ss_pred             cccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhc---------------------------
Confidence            48889999999999999987665 56888999999999999998777665544                           


Q ss_pred             cccCCCCCCCccccchhhhhhhhhhhhccccceeEEEEeccccccccCCcccccceEECCCCccc-CCCCccccccccCC
Q 004704          483 FGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLT-GEIPSDIGQLQAIL  561 (735)
Q Consensus       483 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~-~~~p~~l~~l~~L~  561 (735)
                                                                        +++|+.|++++|.++ +.+|..++.+++|+
T Consensus       444 --------------------------------------------------l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~  473 (570)
T 2z63_A          444 --------------------------------------------------LSSLEVLKMAGNSFQENFLPDIFTELRNLT  473 (570)
T ss_dssp             --------------------------------------------------CTTCCEEECTTCEEGGGEECSCCTTCTTCC
T ss_pred             --------------------------------------------------CCcCcEEECcCCcCccccchhhhhcccCCC
Confidence                                                              367888999999997 57899999999999


Q ss_pred             eEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccCCccccCCCCCCeEEcccCcCcccCCCC
Q 004704          562 ALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPDK  625 (735)
Q Consensus       562 ~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~  625 (735)
                      +|++++|++++..|..|+++++|++|++++|++++..|..+..+++|+.|++++|+++|.+|..
T Consensus       474 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~  537 (570)
T 2z63_A          474 FLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI  537 (570)
T ss_dssp             EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred             EEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcch
Confidence            9999999999888999999999999999999999888888999999999999999999988864

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.2e-48  Score=441.45  Aligned_cols=491  Identities=20%  Similarity=0.210  Sum_probs=395.7

Q ss_pred             CcCCCCCCCCccccccCCCCCCCEEeCCCCcCCCCcchhhhCCCCCCEEeCCCCcccccCChhhhhcCCCCCeeeccccc
Q 004704            1 MNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRN   80 (735)
Q Consensus         1 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~~~   80 (735)
                      |||++|.+++..+.+|.++++|++|+|++|++++..|.+|+++++|++|++++|++++..| ..|.++++|++|++++|.
T Consensus        33 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~  111 (570)
T 2z63_A           33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL-GAFSGLSSLQKLVAVETN  111 (570)
T ss_dssp             EECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECT-TTTTTCTTCCEEECTTSC
T ss_pred             EEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCH-hhhcCccccccccccccc
Confidence            6899999999888999999999999999999998888899999999999999999986544 679999999999999887


Q ss_pred             ccccccCCCCCCCCCeeEEEeeCCCCCC-CCchhhhCCCCCCEEEccCCcCcccCchHHHhCCCCC----cEEECcCCcC
Q 004704           81 NTLHVKTENWLPTSQLIVLGLTKCNLNG-SYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKL----EVLLLKNNSF  155 (735)
Q Consensus        81 ~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L----~~L~L~~n~l  155 (735)
                      +.. ++...+..+++|++|++++|.+.+ .+|..+.++++|++|++++|++++..|.. ++.+++|    ++|++++|.+
T Consensus       112 l~~-l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~~~~~L~l~~n~l  189 (570)
T 2z63_A          112 LAS-LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD-LRVLHQMPLLNLSLDLSLNPM  189 (570)
T ss_dssp             CCC-STTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGG-GHHHHTCTTCCCEEECTTCCC
T ss_pred             ccc-CCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHH-ccchhccchhhhhcccCCCCc
Confidence            644 344457888999999999999887 46889999999999999999998544443 3466777    8899999998


Q ss_pred             cccCcCCcCCCCCcCEEEccCCcCCCcCChhHHHhcccCcEEECcCCcCCCCCCcccCCCCCCCEEECCCccccCccchh
Q 004704          156 SGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQS  235 (735)
Q Consensus       156 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~  235 (735)
                      ++..+..+... +|++|++++|.............++.++...+....+.        ....++.           ++..
T Consensus       190 ~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~--------~~~~l~~-----------~~~~  249 (570)
T 2z63_A          190 NFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFR--------NEGNLEK-----------FDKS  249 (570)
T ss_dssp             CEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECC--------CCSSCEE-----------CCTT
T ss_pred             eecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeecccccc--------Cchhhhh-----------cchh
Confidence            88877777665 78888888875432222222233555555544332221        1111211           1111


Q ss_pred             hhhCCC--CCCEEEccCC-CCCCcCcccccCCCCCCEEEccccccCccccccccCCCCCCEEEeeCCccCCCCCchhhhh
Q 004704          236 VVTGCF--SLELLDLSNN-NFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNF  312 (735)
Q Consensus       236 ~~~~l~--~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~  312 (735)
                      .+.++.  .++.++++++ .+.+..+..+..+++|++|++++|.+. .+|..+..+ +|++|++++|.+. .+|.  ..+
T Consensus       250 ~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l  324 (570)
T 2z63_A          250 ALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT--LKL  324 (570)
T ss_dssp             TTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB--CBC
T ss_pred             hhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc--ccc
Confidence            122222  3567777777 666777888888999999999999988 677778888 9999999999998 6776  355


Q ss_pred             cccCcEEEcCCCcCCCCCCccCCCCCCCCEEEcccCCCCccC--CCcc-CCCCccEEEccCCcccccCcccccCCCCCcE
Q 004704          313 SSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPI--ASSL-NLSSVEHLSLQKNALNGLIPGELFRSCKLVT  389 (735)
Q Consensus       313 ~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~--~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~  389 (735)
                      +. |+.|++++|.+.+..+.  ..+++|++|++++|.+++..  +..+ .+++|+.|++++|.+.+..+. +..+++|++
T Consensus       325 ~~-L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~  400 (570)
T 2z63_A          325 KS-LKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEH  400 (570)
T ss_dssp             SS-CCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCE
T ss_pred             cc-cCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCE
Confidence            55 99999999998866554  67899999999999988654  3333 899999999999999876554 899999999


Q ss_pred             EeCCCCcccccCC-hhhhCCCCccEEEccCCcCCCCCchhhhcCCCCCEEECcCCcCC-CCCCchhhcccccccccCCcc
Q 004704          390 LNLRDNTFSGRIP-HQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFS-GSIPPCFANVLSWRVGSDDVL  467 (735)
Q Consensus       390 L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~l~~~~~~~~  467 (735)
                      |++++|.+++..+ ..+..+++|++|++++|.+.+..|..+.++++|+.|++++|+++ +.+|..+..            
T Consensus       401 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~------------  468 (570)
T 2z63_A          401 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE------------  468 (570)
T ss_dssp             EECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTT------------
T ss_pred             EEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhc------------
Confidence            9999999987665 57889999999999999999889999999999999999999987 456654443            


Q ss_pred             CCCCCCCcccchhhhcccCCCCCCCccccchhhhhhhhhhhhccccceeEEEEeccccccccCCcccccceEECCCCccc
Q 004704          468 NGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLT  547 (735)
Q Consensus       468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~  547 (735)
                                                                                       +++|+.|++++|+++
T Consensus       469 -----------------------------------------------------------------l~~L~~L~l~~n~l~  483 (570)
T 2z63_A          469 -----------------------------------------------------------------LRNLTFLDLSQCQLE  483 (570)
T ss_dssp             -----------------------------------------------------------------CTTCCEEECTTSCCC
T ss_pred             -----------------------------------------------------------------ccCCCEEECCCCccc
Confidence                                                                             367889999999999


Q ss_pred             CCCCccccccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccCCc
Q 004704          548 GEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPP  600 (735)
Q Consensus       548 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~  600 (735)
                      +..|..++.+++|++|++++|++++.+|..|+++++|+.|++++|.+++..|.
T Consensus       484 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~  536 (570)
T 2z63_A          484 QLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  536 (570)
T ss_dssp             EECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             cCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence            88899999999999999999999998888999999999999999999987764

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=1.2e-48  Score=439.36  Aligned_cols=483  Identities=20%  Similarity=0.180  Sum_probs=327.2

Q ss_pred             CCEEeCCCCcCCCCcchhhhCCCCCCEEeCCCCcccccCChhhhhcCCCCCeeecccccccccccCCCCCCCCCeeEEEe
Q 004704           22 LKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGL  101 (735)
Q Consensus        22 L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L  101 (735)
                      ..+.|.+++.++ .+|..+.  ++|++|++++|++++..| ..|.+                         +++|++|++
T Consensus         7 ~~~c~~~~~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~~~-~~~~~-------------------------l~~L~~L~L   57 (549)
T 2z81_A            7 SGVCDGRSRSFT-SIPSGLT--AAMKSLDLSFNKITYIGH-GDLRA-------------------------CANLQVLIL   57 (549)
T ss_dssp             TSEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCCEECS-STTSS-------------------------CTTCCEEEC
T ss_pred             CceEECCCCccc-cccccCC--CCccEEECcCCccCccCh-hhhhc-------------------------CCcccEEEC
Confidence            334566666666 4444332  566666666666654333 22333                         334444444


Q ss_pred             eCCCCCCCCchhhhCCCCCCEEEccCCcCcccCchHHHhCCCCCcEEECcCCcCccc-CcCCcCCCCCcCEEEccCCcCC
Q 004704          102 TKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGI-LQLPKAKHDFLHHLDISCNNFR  180 (735)
Q Consensus       102 ~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~~~~L~~L~Ls~n~l~  180 (735)
                      ++|++++..|.+|.++++|++|++++|+++ .++...++++++|++|++++|.+++. .+..+..+++|++|++++|.+.
T Consensus        58 s~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~  136 (549)
T 2z81_A           58 KSSRINTIEGDAFYSLGSLEHLDLSDNHLS-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETF  136 (549)
T ss_dssp             TTSCCCEECTTTTTTCTTCCEEECTTSCCC-SCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSC
T ss_pred             CCCCcCccChhhccccccCCEEECCCCccC-ccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccc
Confidence            444455455566667777777777777776 34444345777777777777777653 3456778888888888888754


Q ss_pred             CcCChhHHHhcccCcEEECcCCcCCCCCCcccCCCCCCCEEECCCccccCccchhhhhCCCCCCEEEccCCCCCCcC---
Q 004704          181 GKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQF---  257 (735)
Q Consensus       181 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~---  257 (735)
                      +.+|...+..+++|++|++++|.+++..|..++.+++|++|+++.|.+. .++..++..+++|++|++++|.+++..   
T Consensus       137 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  215 (549)
T 2z81_A          137 SEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSP  215 (549)
T ss_dssp             CEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCC
T ss_pred             cccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCccccccccc
Confidence            4666544445788888999888888888888888999999999998876 677777777899999999999888642   


Q ss_pred             cccccCCCCCCEEEccccccCcccc----ccccCCCCCCEEEeeCCccCCCC------CchhhhhcccCcEEEcCCCcCC
Q 004704          258 FSEYMNLTRLRHLYFENNNFSGKIK----DGLLSSTSLQVLDISNNMLSGHI------PHWMGNFSSELEILSMSKNHLE  327 (735)
Q Consensus       258 ~~~~~~l~~L~~L~L~~n~l~~~~~----~~l~~~~~L~~L~l~~n~l~~~~------p~~~~~~~~~L~~L~l~~n~l~  327 (735)
                      ......+++|+.|++++|.+++..+    ..+..+++|+.+++++|.+.+..      ...+..+.. ++.|++.++.+.
T Consensus       216 ~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~-L~~L~l~~~~i~  294 (549)
T 2z81_A          216 LPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGK-VETVTIRRLHIP  294 (549)
T ss_dssp             CSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTT-CCEEEEESCBCS
T ss_pred             cchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcc-cccccccccccc
Confidence            1233457889999999988875443    33456788899999988876421      112233334 777777777655


Q ss_pred             CCC-----CccCCCCCCCCEEEcccCCCCccCCCcc-CCCCccEEEccCCcccccCcc---cccCCCCCcEEeCCCCccc
Q 004704          328 GNV-----PVQLNNLERLRILDISENRLSGPIASSL-NLSSVEHLSLQKNALNGLIPG---ELFRSCKLVTLNLRDNTFS  398 (735)
Q Consensus       328 ~~~-----~~~l~~l~~L~~L~L~~n~l~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~---~~~~~~~L~~L~l~~n~l~  398 (735)
                      ...     +..+...++|+.|++++|.+...+...+ .+++|++|++++|.+.+.+|.   .+..+++|++|++++|+++
T Consensus       295 ~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~  374 (549)
T 2z81_A          295 QFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLR  374 (549)
T ss_dssp             CGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCC
T ss_pred             hhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCccc
Confidence            321     1112234567788888777764433333 577788888888877765532   3566777888888888777


Q ss_pred             ccCC--hhhhCCCCccEEEccCCcCCCCCchhhhcCCCCCEEECcCCcCCCCCCchhhcccccccccCCccCCCCCCCcc
Q 004704          399 GRIP--HQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPE  476 (735)
Q Consensus       399 ~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~  476 (735)
                      +..+  ..+..+++|++|++++|+++ .+|..+..+++|+.|++++|++++ +|..                        
T Consensus       375 ~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~-l~~~------------------------  428 (549)
T 2z81_A          375 SMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV-VKTC------------------------  428 (549)
T ss_dssp             CHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSC-CCTT------------------------
T ss_pred             ccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCccc-ccch------------------------
Confidence            4432  45677778888888888777 567777777788888888887752 2221                        


Q ss_pred             cchhhhcccCCCCCCCccccchhhhhhhhhhhhccccceeEEEEeccccccccCCcccccceEECCCCcccCCCCccccc
Q 004704          477 LDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQ  556 (735)
Q Consensus       477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~  556 (735)
                                                                             ..++|+.||+++|++++.+    +.
T Consensus       429 -------------------------------------------------------~~~~L~~L~Ls~N~l~~~~----~~  449 (549)
T 2z81_A          429 -------------------------------------------------------IPQTLEVLDVSNNNLDSFS----LF  449 (549)
T ss_dssp             -------------------------------------------------------SCTTCSEEECCSSCCSCCC----CC
T ss_pred             -------------------------------------------------------hcCCceEEECCCCChhhhc----cc
Confidence                                                                   1135677888888887532    46


Q ss_pred             cccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccCCccccCCCCCCeEEcccCcCcccCC
Q 004704          557 LQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTP  623 (735)
Q Consensus       557 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p  623 (735)
                      +++|++|+|++|+++ .+|. .+.+++|++|||++|++++.+|..+..+++|+.|++++|+++|.+|
T Consensus       450 l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  514 (549)
T 2z81_A          450 LPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  514 (549)
T ss_dssp             CTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred             CChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence            778888888888887 5665 4677888888888888887777778888888888888888776665

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=1.2e-47  Score=431.10  Aligned_cols=484  Identities=17%  Similarity=0.205  Sum_probs=354.0

Q ss_pred             cCCCCCCCCccccccCCCCCCCEEeCCCCcCCCCcchhhhCCCCCCEEeCCCCcccccCChhhhhcCCCCCeeecccccc
Q 004704            2 NLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNN   81 (735)
Q Consensus         2 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~~~~   81 (735)
                      |.+++.++. +|..+.  ++|++|+|++|++++..|.+|.++++|++|++++|++++..| .+|.++++|++|++++|.+
T Consensus        11 ~~~~~~l~~-ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~Ls~n~l   86 (549)
T 2z81_A           11 DGRSRSFTS-IPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEG-DAFYSLGSLEHLDLSDNHL   86 (549)
T ss_dssp             ECTTSCCSS-CCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEECTTSCC
T ss_pred             ECCCCcccc-ccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccCh-hhccccccCCEEECCCCcc
Confidence            567788874 666554  899999999999998888999999999999999999986555 6799999999999999887


Q ss_pred             cccccCCCCCCCCCeeEEEeeCCCCCC-CCchhhhCCCCCCEEEccCCcCcccCchHHHhCCCCCcEEECcCCcCcccCc
Q 004704           82 TLHVKTENWLPTSQLIVLGLTKCNLNG-SYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQ  160 (735)
Q Consensus        82 ~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~  160 (735)
                      ... +...+..+++|++|++++|++++ ..|..+.++++|++|++++|++.+.+|...+.++++|++|++++|.+++..+
T Consensus        87 ~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  165 (549)
T 2z81_A           87 SSL-SSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQS  165 (549)
T ss_dssp             CSC-CHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECT
T ss_pred             Ccc-CHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccCh
Confidence            543 33346788999999999999986 3567889999999999999986567776556789999999999999999888


Q ss_pred             CCcCCCCCcCEEEccCCcCCCcCChhHHHhcccCcEEECcCCcCCCCC--Cc-ccCCCCCCCEEECCCccccCccchhh-
Q 004704          161 LPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNI--PY-SAGEMKELSLLDLSRNYFSGGLSQSV-  236 (735)
Q Consensus       161 ~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~-~l~~l~~L~~L~L~~n~l~~~~~~~~-  236 (735)
                      ..+..+++|++|+++.|.+. .+|..++..+++|++|++++|.+++..  |. ....+++|+.|++++|.+++..+..+ 
T Consensus       166 ~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~  244 (549)
T 2z81_A          166 QSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELL  244 (549)
T ss_dssp             TTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHH
T ss_pred             hhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHH
Confidence            89999999999999999886 677777666889999999999988632  21 23457888999999888876544433 


Q ss_pred             --hhCCCCCCEEEccCCCCCCcC------cccccCCCCCCEEEccccccCccccccccCCCCCCEEEeeCCccCCCCCch
Q 004704          237 --VTGCFSLELLDLSNNNFEGQF------FSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHW  308 (735)
Q Consensus       237 --~~~l~~L~~L~L~~n~l~~~~------~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~  308 (735)
                        ...+.+|+.+++++|.+.+..      ...+..+++++.|++.++.+....  .+.                 .++..
T Consensus       245 ~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~--~~~-----------------~l~~~  305 (549)
T 2z81_A          245 KLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFY--LFY-----------------DLSTV  305 (549)
T ss_dssp             GGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGG--GSC-----------------CCCHH
T ss_pred             HHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhh--hcc-----------------cchhh
Confidence              234567788888777665421      112344555555555555443210  000                 01111


Q ss_pred             hhhhcccCcEEEcCCCcCCCCCCccC-CCCCCCCEEEcccCCCCccCC---C-ccCCCCccEEEccCCcccccCc--ccc
Q 004704          309 MGNFSSELEILSMSKNHLEGNVPVQL-NNLERLRILDISENRLSGPIA---S-SLNLSSVEHLSLQKNALNGLIP--GEL  381 (735)
Q Consensus       309 ~~~~~~~L~~L~l~~n~l~~~~~~~l-~~l~~L~~L~L~~n~l~~~~~---~-~~~l~~L~~L~l~~n~l~~~~~--~~~  381 (735)
                      .... .+|+.|++++|++. .+|..+ ..+++|++|++++|++++..+   . ...+++|+.|++++|.+++..+  ..+
T Consensus       306 ~~~~-~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  383 (549)
T 2z81_A          306 YSLL-EKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEIL  383 (549)
T ss_dssp             HHHS-TTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHG
T ss_pred             hhhc-ccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhh
Confidence            1111 22555555555544 333332 344555555555555554321   1 1245666666666666654422  446


Q ss_pred             cCCCCCcEEeCCCCcccccCChhhhCCCCccEEEccCCcCCCCCchhhhcCCCCCEEECcCCcCCCCCCchhhccccccc
Q 004704          382 FRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRV  461 (735)
Q Consensus       382 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~  461 (735)
                      ..+++|++|++++|+++ .+|..+..+++|++|++++|.+++ +|..+  .++|+.|++++|++++.++           
T Consensus       384 ~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~-l~~~~--~~~L~~L~Ls~N~l~~~~~-----------  448 (549)
T 2z81_A          384 LTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV-VKTCI--PQTLEVLDVSNNNLDSFSL-----------  448 (549)
T ss_dssp             GGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSC-CCTTS--CTTCSEEECCSSCCSCCCC-----------
T ss_pred             hcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCccc-ccchh--cCCceEEECCCCChhhhcc-----------
Confidence            77888888888888887 677778888888899999888873 44433  2689999999999875321           


Q ss_pred             ccCCccCCCCCCCcccchhhhcccCCCCCCCccccchhhhhhhhhhhhccccceeEEEEeccccccccCCcccccceEEC
Q 004704          462 GSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDL  541 (735)
Q Consensus       462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdL  541 (735)
                                                                                            .+++|+.|+|
T Consensus       449 ----------------------------------------------------------------------~l~~L~~L~L  458 (549)
T 2z81_A          449 ----------------------------------------------------------------------FLPRLQELYI  458 (549)
T ss_dssp             ----------------------------------------------------------------------CCTTCCEEEC
T ss_pred             ----------------------------------------------------------------------cCChhcEEEC
Confidence                                                                                  1367888999


Q ss_pred             CCCcccCCCCccccccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccCC
Q 004704          542 SCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIP  599 (735)
Q Consensus       542 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p  599 (735)
                      ++|+++ .+|. .+.+++|++|+|++|++++.+|+.|+.+++|+.||+++|++++..|
T Consensus       459 s~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  514 (549)
T 2z81_A          459 SRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  514 (549)
T ss_dssp             CSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred             CCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence            999998 7776 5789999999999999999999999999999999999999998766

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=1.1e-48  Score=444.25  Aligned_cols=436  Identities=19%  Similarity=0.260  Sum_probs=286.3

Q ss_pred             CCeeEEEeeCCCCCCCCchhhhCCCCCCEEEccCCcC------cc------cCchHHHhCCCCCcEEECcCCcCcccCcC
Q 004704           94 SQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKL------VG------NFPTWLLRNNPKLEVLLLKNNSFSGILQL  161 (735)
Q Consensus        94 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l------~~------~~p~~~~~~l~~L~~L~L~~n~l~~~~~~  161 (735)
                      ..++.|+|+++++.|.+|..++++++|++|+|++|.+      .+      .+|...   +..|+ +++++|.+.+..+.
T Consensus        81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~---~~~l~-l~l~~~~l~~~~~~  156 (636)
T 4eco_A           81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ---KQKMR-MHYQKTFVDYDPRE  156 (636)
T ss_dssp             CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH---HHHHH-THHHHHHTCCCGGG
T ss_pred             CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH---HHHHH-hhHHHhhhccCchh
Confidence            4789999999999999999999999999999999976      23      444433   23344 55555555554443


Q ss_pred             CcCC-------------------CCCcCEEEcc--CCcCCCcCChhHHHhcccCcEEECcCCcCCCC-------------
Q 004704          162 PKAK-------------------HDFLHHLDIS--CNNFRGKLPHNMGVILQKLMYMDISKNCFEGN-------------  207 (735)
Q Consensus       162 ~~~~-------------------~~~L~~L~Ls--~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~-------------  207 (735)
                      .+..                   ...++.+.+.  .|++++ +|..++. +++|++|++++|.+++.             
T Consensus       157 ~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~-l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~  234 (636)
T 4eco_A          157 DFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMR-LTKLRQFYMGNSPFVAENICEAWENENSEY  234 (636)
T ss_dssp             GSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGG-CTTCCEEEEESCCCCGGGBSSSCSCTTSHH
T ss_pred             hHHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhc-ccCCCEEECcCCccccccccccccccccch
Confidence            3321                   1112222222  456665 6666555 66777777777777664             


Q ss_pred             ----CCcccC--CCCCCCEEECCCccccCccchhhhhCCCCCCEEEccCCC-CCC-cCcccccCC------CCCCEEEcc
Q 004704          208 ----IPYSAG--EMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNN-FEG-QFFSEYMNL------TRLRHLYFE  273 (735)
Q Consensus       208 ----~~~~l~--~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~-l~~-~~~~~~~~l------~~L~~L~L~  273 (735)
                          +|..++  ++++|++|++++|.+.+.+|..+ .++++|++|++++|. +++ .+|..+..+      ++|++|+++
T Consensus       235 ~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~  313 (636)
T 4eco_A          235 AQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFL-KALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIG  313 (636)
T ss_dssp             HHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTT-TTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECC
T ss_pred             hcccCchhhhhcccCCCCEEEecCCcCCccChHHH-hcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECC
Confidence                677766  77777777777777766666544 457777777777776 666 566666554      677777777


Q ss_pred             ccccCccccc--cccCCCCCCEEEeeCCccCCCCCchhhhhcccCcEEEcCCCcCCCCCCccCCCCCC-CCEEEcccCCC
Q 004704          274 NNNFSGKIKD--GLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLER-LRILDISENRL  350 (735)
Q Consensus       274 ~n~l~~~~~~--~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~-L~~L~L~~n~l  350 (735)
                      +|+++ .+|.  .+..+++|++|++++|.++|.+| .+..++. |++|++++|+++ .+|..+..+++ |++|++++|++
T Consensus       314 ~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~-L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l  389 (636)
T 4eco_A          314 YNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIK-LASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKL  389 (636)
T ss_dssp             SSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEE-ESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCC
T ss_pred             CCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCC-CCEEECCCCccc-cccHhhhhhcccCcEEEccCCcC
Confidence            77777 6666  67777777777777777776677 6666665 777777777777 56666777777 77777777777


Q ss_pred             CccCCCcc-C--CCCccEEEccCCcccccCccccc-------CCCCCcEEeCCCCcccccCChhhhCCCCccEEEccCCc
Q 004704          351 SGPIASSL-N--LSSVEHLSLQKNALNGLIPGELF-------RSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNH  420 (735)
Q Consensus       351 ~~~~~~~~-~--l~~L~~L~l~~n~l~~~~~~~~~-------~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~  420 (735)
                      +. +|..+ .  +++|+.|++++|.+.+..|..+.       .+++|++|++++|++++..+..+..+++|++|++++|+
T Consensus       390 ~~-lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~  468 (636)
T 4eco_A          390 KY-IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNM  468 (636)
T ss_dssp             SS-CCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSC
T ss_pred             cc-cchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCC
Confidence            63 33333 2  34677777777777776666666       56677777777777773333344556777777777777


Q ss_pred             CCCCCchh-hhcC-------CCCCEEECcCCcCCCCCCchhhcccccccccCCccCCCCCCCcccchhhhcccCCCCCCC
Q 004704          421 LQGPIPDQ-LCQL-------QKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSS  492 (735)
Q Consensus       421 l~~~~~~~-~~~l-------~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  492 (735)
                      ++ .+|.. +...       ++|+.|++++|+++ .+|..+..                                     
T Consensus       469 l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~-------------------------------------  509 (636)
T 4eco_A          469 LT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRA-------------------------------------  509 (636)
T ss_dssp             CS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGST-------------------------------------
T ss_pred             CC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhh-------------------------------------
Confidence            77 34433 3222       26777777777776 45543320                                     


Q ss_pred             ccccchhhhhhhhhhhhccccceeEEEEeccccccccCCcccccceEECCCCcccCCCCccccccccCCeEeC------C
Q 004704          493 NTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNL------S  566 (735)
Q Consensus       493 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~L------s  566 (735)
                                                            ..+++|+.|+|++|++++ +|..++.+++|+.|+|      +
T Consensus       510 --------------------------------------~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls  550 (636)
T 4eco_A          510 --------------------------------------TTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQ  550 (636)
T ss_dssp             --------------------------------------TTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTT
T ss_pred             --------------------------------------ccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccc
Confidence                                                  012566677777777775 7777777777777777      4


Q ss_pred             CCcCcccCcccccCcCCCCEEeCCCCcccccCCccccCCCCCCeEEcccCcCcccC
Q 004704          567 NNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRT  622 (735)
Q Consensus       567 ~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~  622 (735)
                      +|++.+.+|..++++++|++|||++|++ +.+|..+.  ++|+.||+++|++....
T Consensus       551 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~~~  603 (636)
T 4eco_A          551 GNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNISID  603 (636)
T ss_dssp             CCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTCEEE
T ss_pred             cCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCcccc
Confidence            5666777777777777777777777777 46666655  67777777777766443

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=9.9e-46  Score=423.56  Aligned_cols=551  Identities=19%  Similarity=0.186  Sum_probs=386.0

Q ss_pred             EEeCCCCcCCCCcchhhhCCCCCCEEeCCCCcccccCChhhhhcCCCCCeeecccccccccccCCCCCCCCCeeEEEeeC
Q 004704           24 ILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTK  103 (735)
Q Consensus        24 ~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~  103 (735)
                      +.+=++-+++ .+|..+-  +++++|||++|+|++ +|..+|.++++|++|+|++|.+. .+++.+|..+++|++|+|++
T Consensus        35 ~~~c~~~~l~-~vP~~lp--~~~~~LdLs~N~i~~-l~~~~f~~l~~L~~L~Ls~N~i~-~i~~~~f~~L~~L~~L~Ls~  109 (635)
T 4g8a_A           35 TYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRH-LGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTG  109 (635)
T ss_dssp             EEECTTSCCS-SCCSSSC--TTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTT
T ss_pred             EEECCCCCcC-ccCCCCC--cCCCEEEeeCCCCCC-CCHHHHhCCCCCCEEECCCCcCC-CcChhHhcCCCCCCEEEccC
Confidence            3444444455 3444331  246666666666653 33345666666666666655442 34445566677777777777


Q ss_pred             CCCCCCCchhhhCCCCCCEEEccCCcCcccCchHHHhCCCCCcEEECcCCcCccc-CcCCcCCCCCcCEEEccCCcCCCc
Q 004704          104 CNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGI-LQLPKAKHDFLHHLDISCNNFRGK  182 (735)
Q Consensus       104 n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~~~~L~~L~Ls~n~l~~~  182 (735)
                      |++++..+.+|.++++|++|+|++|+++ .+|...++++++|++|++++|.+++. .+..+..+++|++|++++|++++.
T Consensus       110 N~l~~l~~~~f~~L~~L~~L~Ls~N~l~-~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~  188 (635)
T 4g8a_A          110 NPIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI  188 (635)
T ss_dssp             CCCCEECGGGGTTCTTCCEEECTTSCCC-CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE
T ss_pred             CcCCCCCHHHhcCCCCCCEEECCCCcCC-CCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccc
Confidence            7777666677788888888888888877 56655556778888888888887664 456667778888888888888755


Q ss_pred             CChhHHHhccc----CcEEECcCCcCCCCCCcccCCCCCCCEEECCCccccCccchhhhhCCCCCCEEEccCCC------
Q 004704          183 LPHNMGVILQK----LMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNN------  252 (735)
Q Consensus       183 ~~~~~~~~l~~----L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~------  252 (735)
                      .+..+.. +++    ...++++.|.+.. ++........++.+++.+|.....+....+.++..++...+..+.      
T Consensus       189 ~~~~l~~-L~~l~~~~~~~~ls~n~l~~-i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~  266 (635)
T 4g8a_A          189 YCTDLRV-LHQMPLLNLSLDLSLNPMNF-IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGN  266 (635)
T ss_dssp             CGGGGHH-HHTCTTCCCEEECTTCCCCE-ECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCC
T ss_pred             ccccccc-hhhhhhhhhhhhcccCcccc-cCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccc
Confidence            5554433 333    3467888888874 444444555677788888876655666666777777776664332      


Q ss_pred             CCCcCcccccCCCCCCEEEccccccCc---cccccccCCCCCCEEEeeCCccCCCCCchhhhhcccCcEEEcCCCcCCCC
Q 004704          253 FEGQFFSEYMNLTRLRHLYFENNNFSG---KIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGN  329 (735)
Q Consensus       253 l~~~~~~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~  329 (735)
                      +.......+..+..+....+..+....   ..+..+....+++.+++.++.+.. ++ .+..... ++.|++.+|.+.+.
T Consensus       267 l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~-~~-~~~~~~~-L~~L~l~~~~~~~~  343 (635)
T 4g8a_A          267 LEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIER-VK-DFSYNFG-WQHLELVNCKFGQF  343 (635)
T ss_dssp             CSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEE-CG-GGGSCCC-CSEEEEESCEESSC
T ss_pred             cccccccccccccchhhhhhhhhhhcccccchhhhhhhhccccccccccccccc-cc-ccccchh-hhhhhcccccccCc
Confidence            222333444555566666665554331   223345566788899988888763 32 2333444 89999999888754


Q ss_pred             CCccCCCCCCCCEEEcccCCCCccCCCccCCCCccEEEccCCcccc--cCcccccCCCCCcEEeCCCCcccccCChhhhC
Q 004704          330 VPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNG--LIPGELFRSCKLVTLNLRDNTFSGRIPHQINE  407 (735)
Q Consensus       330 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~  407 (735)
                      .+.   .+..|+.+++..|.+.... ....+++|+.+++++|.+..  ..+..+..+.+|+.+++..|.+. ..+..+..
T Consensus       344 ~~~---~l~~L~~l~l~~n~~~~~~-~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~-~~~~~~~~  418 (635)
T 4g8a_A          344 PTL---KLKSLKRLTFTSNKGGNAF-SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVI-TMSSNFLG  418 (635)
T ss_dssp             CCC---BCTTCCEEEEESCCSCCBC-CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEE-EECSCCTT
T ss_pred             Ccc---cchhhhhcccccccCCCCc-ccccccccccchhhccccccccccccchhhhhhhhhhhccccccc-cccccccc
Confidence            443   4567888999888776433 33478899999999998754  45566778889999999999887 45567788


Q ss_pred             CCCccEEEccCCcCCCCCc-hhhhcCCCCCEEECcCCcCCCCCCchhhcccccccccCCccCCCCCCCcccchhhhcccC
Q 004704          408 HSNLRFLLLGGNHLQGPIP-DQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSL  486 (735)
Q Consensus       408 l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  486 (735)
                      +++|+.+++.+|......+ ..+..+++++.+++++|.+.+..|..+..                               
T Consensus       419 l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~-------------------------------  467 (635)
T 4g8a_A          419 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG-------------------------------  467 (635)
T ss_dssp             CTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTT-------------------------------
T ss_pred             cccccchhhhhcccccccccccccccccccccccccccccccccccccc-------------------------------
Confidence            8999999999887765543 56788899999999999988766654433                               


Q ss_pred             CCCCCCccccchhhhhhhhhhhhccccceeEEEEeccccccccCCcccccceEECCCCcc-cCCCCccccccccCCeEeC
Q 004704          487 GNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQL-TGEIPSDIGQLQAILALNL  565 (735)
Q Consensus       487 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l-~~~~p~~l~~l~~L~~L~L  565 (735)
                                                                    ++.++.|++++|++ .+.+|..|..+++|++|+|
T Consensus       468 ----------------------------------------------~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~L  501 (635)
T 4g8a_A          468 ----------------------------------------------LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL  501 (635)
T ss_dssp             ----------------------------------------------CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEEC
T ss_pred             ----------------------------------------------chhhhhhhhhhcccccccCchhhhhccccCEEEC
Confidence                                                          35678899999975 4457888999999999999


Q ss_pred             CCCcCcccCcccccCcCCCCEEeCCCCcccccCCccccCCCCCCeEEcccCcCcccCCCCC-CC-CccCCcccCCCCCCC
Q 004704          566 SNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPDKG-QF-ATFDESSYRGNPSLC  643 (735)
Q Consensus       566 s~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~-~~-~~~~~~~~~gN~~lc  643 (735)
                      ++|++++.+|..|+++++|++|+|++|+|++..|..+..+++|++||+++|+|++.+|..- .+ .++....+.||||.|
T Consensus       502 s~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C  581 (635)
T 4g8a_A          502 SQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC  581 (635)
T ss_dssp             TTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCC
T ss_pred             CCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcc
Confidence            9999999999999999999999999999998889999999999999999999999888742 23 567778899999999


Q ss_pred             CccccC-------CCCCCCCCCccCCCCCcc
Q 004704          644 AWLIQQ-------KYSRTLKPTTTQASGAEE  667 (735)
Q Consensus       644 ~~~~~~-------~~~~~~~~~~~~~~~~~~  667 (735)
                      +|.+.+       .-........+.|..|+.
T Consensus       582 ~C~~~~~~~wl~~~~~~~~~~~~~~C~~P~~  612 (635)
T 4g8a_A          582 TCEHQSFLQWIKDQRQLLVEVERMECATPSD  612 (635)
T ss_dssp             SGGGHHHHHHHHHTTTTBSCGGGCBBCSSTT
T ss_pred             cCCcHHHHHHHHhCCCccCCCCCceeCCchH
Confidence            987532       111222334567777654

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=3.1e-48  Score=440.60  Aligned_cols=460  Identities=16%  Similarity=0.176  Sum_probs=284.9

Q ss_pred             CCCCEEeCCCCcCCCCcchhhhCCCCCCEEeCCCCcc------cc------cCChhhhhcCCCCCeeecccccccccccC
Q 004704           20 TRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNF------EG------MFPLSSLANHSKLEGLLLSTRNNTLHVKT   87 (735)
Q Consensus        20 ~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l------~~------~~~~~~~~~l~~L~~L~L~~~~~~~~~~~   87 (735)
                      .+++.|+|++|.++|.+|.+|+++++|++|+|++|.+      .+      .+|...   +..|+ ++++.+.....++.
T Consensus        81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~---~~~l~-l~l~~~~l~~~~~~  156 (636)
T 4eco_A           81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ---KQKMR-MHYQKTFVDYDPRE  156 (636)
T ss_dssp             CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH---HHHHH-THHHHHHTCCCGGG
T ss_pred             CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH---HHHHH-hhHHHhhhccCchh
Confidence            5789999999999999999999999999999999976      23      344322   33444 55555544433332


Q ss_pred             CCCCCCCCeeEEEee--------------------CCCCCCCCchhhhCCCCCCEEEccCCcCccc-CchHHHhCCCCCc
Q 004704           88 ENWLPTSQLIVLGLT--------------------KCNLNGSYPDFLLHQYHLKYLDLSHNKLVGN-FPTWLLRNNPKLE  146 (735)
Q Consensus        88 ~~~~~~~~L~~L~L~--------------------~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~p~~~~~~l~~L~  146 (735)
                      .....+.++..+++.                    +|++++ +|..++++++|++|+|++|++++. ++....   +   
T Consensus       157 ~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~---~---  229 (636)
T 4eco_A          157 DFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWE---N---  229 (636)
T ss_dssp             GSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCS---C---
T ss_pred             hHHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCcccccccccccc---c---
Confidence            211011111111111                    234444 455555555555555555555542 000000   0   


Q ss_pred             EEECcCCcCcccCcCCcC--CCCCcCEEEccCCcCCCcCChhHHHhcccCcEEECcCCc-CCC-CCCcccCCC------C
Q 004704          147 VLLLKNNSFSGILQLPKA--KHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNC-FEG-NIPYSAGEM------K  216 (735)
Q Consensus       147 ~L~L~~n~l~~~~~~~~~--~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~-l~~-~~~~~l~~l------~  216 (735)
                         -+.+...+.+|..+.  .+++|++|++++|.+.+.+|..++. +++|++|++++|. +++ .+|..++.+      +
T Consensus       230 ---~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~  305 (636)
T 4eco_A          230 ---ENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKA-LPEMQLINVACNRGISGEQLKDDWQALADAPVGE  305 (636)
T ss_dssp             ---TTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTT-CSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGG
T ss_pred             ---cccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhc-CCCCCEEECcCCCCCccccchHHHHhhhccccCC
Confidence               000000000344444  4455555555555544444444443 4455555555554 444 444444443      5


Q ss_pred             CCCEEECCCccccCccch-hhhhCCCCCCEEEccCCCCCCcCcccccCCCCCCEEEccccccCccccccccCCCC-CCEE
Q 004704          217 ELSLLDLSRNYFSGGLSQ-SVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTS-LQVL  294 (735)
Q Consensus       217 ~L~~L~L~~n~l~~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~-L~~L  294 (735)
                      +|++|++++|.++ .+|. ..+..+++|++|++++|.+.+.+| .+..+++|++|++++|.++ .+|..+..+++ |++|
T Consensus       306 ~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L  382 (636)
T 4eco_A          306 KIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENL  382 (636)
T ss_dssp             TCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEE
T ss_pred             CCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEE
Confidence            5555555555555 4444 123455555555555555555555 5555666666666666665 55555666666 6666


Q ss_pred             EeeCCccCCCCCchhhhhc-ccCcEEEcCCCcCCCCCCccCC-------CCCCCCEEEcccCCCCccCCCcc-CCCCccE
Q 004704          295 DISNNMLSGHIPHWMGNFS-SELEILSMSKNHLEGNVPVQLN-------NLERLRILDISENRLSGPIASSL-NLSSVEH  365 (735)
Q Consensus       295 ~l~~n~l~~~~p~~~~~~~-~~L~~L~l~~n~l~~~~~~~l~-------~l~~L~~L~L~~n~l~~~~~~~~-~l~~L~~  365 (735)
                      ++++|.++ .+|..+.... .+|+.|++++|++++..|..+.       .+++|++|++++|+++..++..+ .+++|+.
T Consensus       383 ~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~  461 (636)
T 4eco_A          383 SFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSS  461 (636)
T ss_dssp             ECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSE
T ss_pred             EccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCE
Confidence            66666666 5665554432 1266667777766666666666       66677777777777775444444 4777777


Q ss_pred             EEccCCcccccCcccccCC-------CCCcEEeCCCCcccccCChhhh--CCCCccEEEccCCcCCCCCchhhhcCCCCC
Q 004704          366 LSLQKNALNGLIPGELFRS-------CKLVTLNLRDNTFSGRIPHQIN--EHSNLRFLLLGGNHLQGPIPDQLCQLQKLA  436 (735)
Q Consensus       366 L~l~~n~l~~~~~~~~~~~-------~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  436 (735)
                      |++++|.++...+..+...       ++|+.|++++|+++ .+|..+.  .+++|++|++++|++++ +|..+..+++|+
T Consensus       462 L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~  539 (636)
T 4eco_A          462 INLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLK  539 (636)
T ss_dssp             EECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCC
T ss_pred             EECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCC
Confidence            7777777773333333322       38999999999999 7888886  89999999999999997 888899999999


Q ss_pred             EEECcCCcCCCCCCchhhcccccccccCCccCCCCCCCcccchhhhcccCCCCCCCccccchhhhhhhhhhhhcccccee
Q 004704          437 MMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVE  516 (735)
Q Consensus       437 ~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  516 (735)
                      .|++++|+.                                                                       
T Consensus       540 ~L~Ls~N~~-----------------------------------------------------------------------  548 (636)
T 4eco_A          540 GFGIRNQRD-----------------------------------------------------------------------  548 (636)
T ss_dssp             EEECCSCBC-----------------------------------------------------------------------
T ss_pred             EEECCCCcc-----------------------------------------------------------------------
Confidence            999988752                                                                       


Q ss_pred             EEEEeccccccccCCcccccceEECCCCcccCCCCccccccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccc
Q 004704          517 IEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTG  596 (735)
Q Consensus       517 ~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~  596 (735)
                                              +++|++.+.+|..++.+++|++|+|++|++ +.+|..+.  ++|+.|||++|++..
T Consensus       549 ------------------------ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~  601 (636)
T 4eco_A          549 ------------------------AQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNIS  601 (636)
T ss_dssp             ------------------------TTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTCE
T ss_pred             ------------------------cccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCcc
Confidence                                    356778888899999999999999999999 47787766  799999999998874


Q ss_pred             cC
Q 004704          597 QI  598 (735)
Q Consensus       597 ~~  598 (735)
                      ..
T Consensus       602 ~~  603 (636)
T 4eco_A          602 ID  603 (636)
T ss_dssp             EE
T ss_pred             cc
Confidence            33

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=4.3e-47  Score=423.30  Aligned_cols=402  Identities=19%  Similarity=0.225  Sum_probs=247.7

Q ss_pred             CchhhhCCCCCCEEEccCCcCcccCchHHHhCCCCCcEEECcCCcCccc-CcCCcCCCCCcCEEEccCCcCCCcCChhHH
Q 004704          110 YPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGI-LQLPKAKHDFLHHLDISCNNFRGKLPHNMG  188 (735)
Q Consensus       110 ~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~  188 (735)
                      .|..|.++++|++|++++|+++ .+|..   .+++|++|++++|.+++. .|..++.+++|++|++++|.+++   ..+ 
T Consensus        61 ~~~~~~~l~~L~~L~Ls~N~l~-~lp~~---~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~-  132 (520)
T 2z7x_B           61 DISVFKFNQELEYLDLSHNKLV-KISCH---PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSV-  132 (520)
T ss_dssp             EGGGGTTCTTCCEEECCSSCCC-EEECC---CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGG-
T ss_pred             ChHHhhcccCCCEEecCCCcee-ecCcc---ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhc-
Confidence            3444555555555555555555 44443   455555555555555542 34455555666666666665543   112 


Q ss_pred             HhcccC--cEEECcCCcC--CCCCCcccCCCC-CCCEEECCCccccCccchhhhhCCCCCCEEEccCCCCCCcCcccccC
Q 004704          189 VILQKL--MYMDISKNCF--EGNIPYSAGEMK-ELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMN  263 (735)
Q Consensus       189 ~~l~~L--~~L~L~~n~l--~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  263 (735)
                      ..+++|  ++|++++|.+  .+..|..+..++ ....+++++|.+.+.++...+..+++|+.+++++|.......     
T Consensus       133 ~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-----  207 (520)
T 2z7x_B          133 LPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCS-----  207 (520)
T ss_dssp             GGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTH-----
T ss_pred             cccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccc-----
Confidence            224455  6666666665  445555544443 122345555555544444444445555555555543000000     


Q ss_pred             CCCCCEEEccccccCccccccccCCCCCCEEEeeCCccCCCCCchhh---hhcccCcEEEcCCCcCCCCCCccC-----C
Q 004704          264 LTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMG---NFSSELEILSMSKNHLEGNVPVQL-----N  335 (735)
Q Consensus       264 l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~---~~~~~L~~L~l~~n~l~~~~~~~l-----~  335 (735)
                                  .+.+.++ .+..+++|+.|++++|.+++..+..+.   ..+ +|++|++++|++++.+|..+     .
T Consensus       208 ------------~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~-~L~~L~l~~n~l~~~~p~~~~~~~~~  273 (520)
T 2z7x_B          208 ------------YFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHT-TVWYFSISNVKLQGQLDFRDFDYSGT  273 (520)
T ss_dssp             ------------HHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTS-SCSEEEEEEEEEESCCCCCCCCCCSC
T ss_pred             ------------eeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhC-cccEEEeecccccCccccchhhcccc
Confidence                        0222222 233344444444444443322111111   011 25555555555555555554     5


Q ss_pred             CCCCCCEEEcccCCCCccCC-Ccc-C---CCCccEEEccCCcccccCcccccCCCCCcEEeCCCCcccccCChhhhCCCC
Q 004704          336 NLERLRILDISENRLSGPIA-SSL-N---LSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSN  410 (735)
Q Consensus       336 ~l~~L~~L~L~~n~l~~~~~-~~~-~---l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~  410 (735)
                      .+++|+.+++++|.+  .+| ... .   ..+|+.|++++|.+....  .+..+++|++|++++|++++..|..++.+++
T Consensus       274 ~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  349 (520)
T 2z7x_B          274 SLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTE  349 (520)
T ss_dssp             CCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSS
T ss_pred             cCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCC
Confidence            666677777777766  222 111 2   256777777777765432  1256778888888888888778888888888


Q ss_pred             ccEEEccCCcCCC--CCchhhhcCCCCCEEECcCCcCCCCCCch-hhcccccccccCCccCCCCCCCcccchhhhcccCC
Q 004704          411 LRFLLLGGNHLQG--PIPDQLCQLQKLAMMDLSRNKFSGSIPPC-FANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLG  487 (735)
Q Consensus       411 L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  487 (735)
                      |++|++++|++++  .+|..+..+++|++|++++|++++.+|.. +.                                 
T Consensus       350 L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~---------------------------------  396 (520)
T 2z7x_B          350 LETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCS---------------------------------  396 (520)
T ss_dssp             CCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCC---------------------------------
T ss_pred             CCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhc---------------------------------
Confidence            8888888888886  45677888889999999999888655542 21                                 


Q ss_pred             CCCCCccccchhhhhhhhhhhhccccceeEEEEeccccccccCCcccccceEECCCCcccCCCCccccccccCCeEeCCC
Q 004704          488 NNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSN  567 (735)
Q Consensus       488 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~  567 (735)
                                                                  .+++|+.|++++|++++.+|..+.  ++|+.|++++
T Consensus       397 --------------------------------------------~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~  430 (520)
T 2z7x_B          397 --------------------------------------------WTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHS  430 (520)
T ss_dssp             --------------------------------------------CCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCS
T ss_pred             --------------------------------------------cCccCCEEECcCCCCCcchhhhhc--ccCCEEECCC
Confidence                                                        235788899999999887777665  7899999999


Q ss_pred             CcCcccCcccccCcCCCCEEeCCCCcccccCCcc-ccCCCCCCeEEcccCcCcccCC
Q 004704          568 NSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQ-LTALNFLSIFNVSYNNLSGRTP  623 (735)
Q Consensus       568 N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~-l~~l~~L~~L~ls~N~l~~~~p  623 (735)
                      |+++ .+|..+..+++|++|||++|+++ .+|.. +..+++|++|++++|+++|.++
T Consensus       431 N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~  485 (520)
T 2z7x_B          431 NKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP  485 (520)
T ss_dssp             SCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             Cccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCCCcccCC
Confidence            9999 78888889999999999999999 46655 8999999999999999998776

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=7.7e-47  Score=435.21  Aligned_cols=484  Identities=14%  Similarity=0.168  Sum_probs=300.9

Q ss_pred             CCCCEEeCCCCcCCCCcchhhhCCCCCCEEeC-CCCcccccCChhhhhcCCCCCe-----eeccc----------cccc-
Q 004704           20 TRLKILDISSNQLNGSLPSVISNLTSLEYLDL-SHNNFEGMFPLSSLANHSKLEG-----LLLST----------RNNT-   82 (735)
Q Consensus        20 ~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L-s~n~l~~~~~~~~~~~l~~L~~-----L~L~~----------~~~~-   82 (735)
                      .+++.|+|++|.++|.+|++|+++++|++|+| ++|.++|..|.........+..     +....          .+.. 
T Consensus       323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~  402 (876)
T 4ecn_A          323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD  402 (876)
T ss_dssp             SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred             CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence            57999999999999999999999999999999 8998887755221110000000     00000          0000 


Q ss_pred             ---------ccccCCCCCCCCCeeEEEeeC--CCCCCCCchhhhCCCCCCEEEccCCcCccc-CchHHHhCCCCCcEEEC
Q 004704           83 ---------LHVKTENWLPTSQLIVLGLTK--CNLNGSYPDFLLHQYHLKYLDLSHNKLVGN-FPTWLLRNNPKLEVLLL  150 (735)
Q Consensus        83 ---------~~~~~~~~~~~~~L~~L~L~~--n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~p~~~~~~l~~L~~L~L  150 (735)
                               .............++.+.+..  |++++ +|..+.++++|++|+|++|++++. +|....         ..
T Consensus       403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~---------~~  472 (876)
T 4ecn_A          403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWE---------DA  472 (876)
T ss_dssp             HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCS---------CT
T ss_pred             HHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCccccccc---------cc
Confidence                     000000001112233333322  55555 666677777777777777777651 110000         00


Q ss_pred             cCCcCcccCcCCcC--CCCCcCEEEccCCcCCCcCChhHHHhcccCcEEECcCCc-CCC-CCCcccCC-------CCCCC
Q 004704          151 KNNSFSGILQLPKA--KHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNC-FEG-NIPYSAGE-------MKELS  219 (735)
Q Consensus       151 ~~n~l~~~~~~~~~--~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~-l~~-~~~~~l~~-------l~~L~  219 (735)
                      +.|.+++.+|..++  .+++|++|++++|.+.+.+|..+.. +++|++|++++|. +++ .+|..++.       +++|+
T Consensus       473 s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~-L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~  551 (876)
T 4ecn_A          473 NSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYD-LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQ  551 (876)
T ss_dssp             TSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGG-CSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCC
T ss_pred             ccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhC-CCCCCEEECcCCCCcccccchHHHHhhhhcccccCCcc
Confidence            00111112344443  4555555555555544445544443 4455555555554 444 34433332       23666


Q ss_pred             EEECCCccccCccch-hhhhCCCCCCEEEccCCCCCCcCcccccCCCCCCEEEccccccCccccccccCCCC-CCEEEee
Q 004704          220 LLDLSRNYFSGGLSQ-SVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTS-LQVLDIS  297 (735)
Q Consensus       220 ~L~L~~n~l~~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~-L~~L~l~  297 (735)
                      +|++++|.++ .+|. ..+..+++|++|++++|.++ .+| .|..+++|+.|++++|.+. .+|..+..+++ |++|+++
T Consensus       552 ~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls  627 (876)
T 4ecn_A          552 IFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFS  627 (876)
T ss_dssp             EEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECC
T ss_pred             EEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECc
Confidence            6666666665 5554 22345666666666666665 444 5666666666666666666 55555666666 6666666


Q ss_pred             CCccCCCCCchhhhhc-ccCcEEEcCCCcCCCCCCcc---CC--CCCCCCEEEcccCCCCccCCCcc-CCCCccEEEccC
Q 004704          298 NNMLSGHIPHWMGNFS-SELEILSMSKNHLEGNVPVQ---LN--NLERLRILDISENRLSGPIASSL-NLSSVEHLSLQK  370 (735)
Q Consensus       298 ~n~l~~~~p~~~~~~~-~~L~~L~l~~n~l~~~~~~~---l~--~l~~L~~L~L~~n~l~~~~~~~~-~l~~L~~L~l~~  370 (735)
                      +|.++ .+|..+.... .+|+.|++++|++.+.+|..   +.  .+++|+.|++++|+++..+...+ .+++|+.|++++
T Consensus       628 ~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~  706 (876)
T 4ecn_A          628 HNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSN  706 (876)
T ss_dssp             SSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCS
T ss_pred             CCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCC
Confidence            66666 5555544432 12666666666666544422   11  23467777777777774444444 567777777777


Q ss_pred             CcccccCcccccC--------CCCCcEEeCCCCcccccCChhhh--CCCCccEEEccCCcCCCCCchhhhcCCCCCEEEC
Q 004704          371 NALNGLIPGELFR--------SCKLVTLNLRDNTFSGRIPHQIN--EHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDL  440 (735)
Q Consensus       371 n~l~~~~~~~~~~--------~~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  440 (735)
                      |.+. .+|..+..        +++|+.|+|++|+++ .+|..+.  .+++|+.|+|++|++++ +|..+..+++|+.|++
T Consensus       707 N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~L  783 (876)
T 4ecn_A          707 NLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGI  783 (876)
T ss_dssp             CCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEEC
T ss_pred             CcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEEC
Confidence            7777 34443332        338999999999998 7888887  89999999999999997 7888999999999999


Q ss_pred             cCCcCCCCCCchhhcccccccccCCccCCCCCCCcccchhhhcccCCCCCCCccccchhhhhhhhhhhhccccceeEEEE
Q 004704          441 SRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFA  520 (735)
Q Consensus       441 s~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  520 (735)
                      ++|+                                                                            
T Consensus       784 s~N~----------------------------------------------------------------------------  787 (876)
T 4ecn_A          784 RHQR----------------------------------------------------------------------------  787 (876)
T ss_dssp             CCCB----------------------------------------------------------------------------
T ss_pred             CCCC----------------------------------------------------------------------------
Confidence            8875                                                                            


Q ss_pred             eccccccccCCcccccceEECCCCcccCCCCccccccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccCCc
Q 004704          521 MKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPP  600 (735)
Q Consensus       521 ~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~  600 (735)
                                         ++++|++.+.+|..++.+++|+.|+|++|++ +.+|..+.  ++|+.|||++|++....+.
T Consensus       788 -------------------~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~  845 (876)
T 4ecn_A          788 -------------------DAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVT  845 (876)
T ss_dssp             -------------------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECG
T ss_pred             -------------------CcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChH
Confidence                               2356778888899999999999999999999 57888766  6999999999999877777


Q ss_pred             cccCCCCCCeEEcccCcCcc
Q 004704          601 QLTALNFLSIFNVSYNNLSG  620 (735)
Q Consensus       601 ~l~~l~~L~~L~ls~N~l~~  620 (735)
                      .+.....+..+.+++|++..
T Consensus       846 ~~~~~~~~~~~~L~~n~~~~  865 (876)
T 4ecn_A          846 SVCPYIEAGMYVLLYDKTQD  865 (876)
T ss_dssp             GGHHHHHTTCCEEECCTTSE
T ss_pred             HccccccchheeecCCCccc
Confidence            77777777888888887753

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=4.2e-46  Score=429.11  Aligned_cols=462  Identities=18%  Similarity=0.217  Sum_probs=317.7

Q ss_pred             CCeeEEEeeCCCCCCCCchhhhCCCCCCEEEc-cCCcCcccCchHHHhCCCCCc-----EEE----------CcCCcCcc
Q 004704           94 SQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDL-SHNKLVGNFPTWLLRNNPKLE-----VLL----------LKNNSFSG  157 (735)
Q Consensus        94 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L-s~n~l~~~~p~~~~~~l~~L~-----~L~----------L~~n~l~~  157 (735)
                      ..++.|+|++|++.|.+|+.++++++|++|+| ++|.++|..|.........+.     .+.          .....+.+
T Consensus       323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~  402 (876)
T 4ecn_A          323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD  402 (876)
T ss_dssp             SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred             CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence            47899999999999999999999999999999 888877663321000000000     000          00000000


Q ss_pred             c-----------CcCCcCCCCCcCEEEccC--CcCCCcCChhHHHhcccCcEEECcCCcCCC-----------------C
Q 004704          158 I-----------LQLPKAKHDFLHHLDISC--NNFRGKLPHNMGVILQKLMYMDISKNCFEG-----------------N  207 (735)
Q Consensus       158 ~-----------~~~~~~~~~~L~~L~Ls~--n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~-----------------~  207 (735)
                      .           .+........++.+.+..  |.+++ +|..++. +++|++|++++|.+++                 .
T Consensus       403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~-L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~  480 (876)
T 4ecn_A          403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQR-LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQY  480 (876)
T ss_dssp             HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGG-CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHH
T ss_pred             HHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhc-CCCCCEEECcCCcCCCCccccccccccccccccc
Confidence            0           000011112233333332  55664 6666554 6677777777777665                 3


Q ss_pred             CCcccC--CCCCCCEEECCCccccCccchhhhhCCCCCCEEEccCCC-CCC-cCcccccCC-------CCCCEEEccccc
Q 004704          208 IPYSAG--EMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNN-FEG-QFFSEYMNL-------TRLRHLYFENNN  276 (735)
Q Consensus       208 ~~~~l~--~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~-l~~-~~~~~~~~l-------~~L~~L~L~~n~  276 (735)
                      +|..++  ++++|++|++++|.+.+.+|..+ .++++|++|++++|. +++ .+|..+..+       ++|+.|++++|.
T Consensus       481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l-~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~  559 (876)
T 4ecn_A          481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFL-YDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN  559 (876)
T ss_dssp             TTSCCCGGGCTTCCEEEEESCTTCCSCCGGG-GGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC
T ss_pred             CChhhhhccCCCCCEEECcCCCCCccChHHH-hCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc
Confidence            777766  77777777777777777777544 467777777777776 666 566544443       478888888888


Q ss_pred             cCccccc--cccCCCCCCEEEeeCCccCCCCCchhhhhcccCcEEEcCCCcCCCCCCccCCCCCC-CCEEEcccCCCCcc
Q 004704          277 FSGKIKD--GLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLER-LRILDISENRLSGP  353 (735)
Q Consensus       277 l~~~~~~--~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~-L~~L~L~~n~l~~~  353 (735)
                      ++ .+|.  .+..+++|++|++++|.++ .+| .++.++. |+.|++++|+++ .+|..+..+++ |++|++++|+++ .
T Consensus       560 L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~-L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~  633 (876)
T 4ecn_A          560 LE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVK-LTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-Y  633 (876)
T ss_dssp             CC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSE-ESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-S
T ss_pred             CC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCc-ceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-c
Confidence            77 6776  7777888888888888877 777 6666666 888888888877 67777777777 888888888877 3


Q ss_pred             CCCcc-CC--CCccEEEccCCcccccCcccc---c--CCCCCcEEeCCCCcccccCChhh-hCCCCccEEEccCCcCCCC
Q 004704          354 IASSL-NL--SSVEHLSLQKNALNGLIPGEL---F--RSCKLVTLNLRDNTFSGRIPHQI-NEHSNLRFLLLGGNHLQGP  424 (735)
Q Consensus       354 ~~~~~-~l--~~L~~L~l~~n~l~~~~~~~~---~--~~~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~  424 (735)
                      +|..+ .+  ++|+.|++++|.+.+.+|...   .  .+++|+.|++++|.++ .+|..+ ..+++|+.|+|++|++. .
T Consensus       634 lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~  711 (876)
T 4ecn_A          634 IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-S  711 (876)
T ss_dssp             CCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-C
T ss_pred             CchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-c
Confidence            44443 33  348888888888877655322   2  3457889999999888 555554 47888999999999888 5


Q ss_pred             Cchhhhc--------CCCCCEEECcCCcCCCCCCchhhcccccccccCCccCCCCCCCcccchhhhcccCCCCCCCcccc
Q 004704          425 IPDQLCQ--------LQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMF  496 (735)
Q Consensus       425 ~~~~~~~--------l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  496 (735)
                      +|..+..        +++|+.|+|++|+++ .+|..+..                                         
T Consensus       712 ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~-----------------------------------------  749 (876)
T 4ecn_A          712 IPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRA-----------------------------------------  749 (876)
T ss_dssp             CCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGST-----------------------------------------
T ss_pred             cChHHhccccccccccCCccEEECCCCCCc-cchHHhhh-----------------------------------------
Confidence            5554433        238999999999988 56655430                                         


Q ss_pred             chhhhhhhhhhhhccccceeEEEEeccccccccCCcccccceEECCCCcccCCCCccccccccCCeEeCCC------CcC
Q 004704          497 GMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSN------NSL  570 (735)
Q Consensus       497 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~------N~l  570 (735)
                                                        ..+++|+.|+|++|++++ +|..++.+++|+.|+|++      |++
T Consensus       750 ----------------------------------~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l  794 (876)
T 4ecn_A          750 ----------------------------------TTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRI  794 (876)
T ss_dssp             ----------------------------------TTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBC
T ss_pred             ----------------------------------ccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccc
Confidence                                              123678889999999996 788899999999999976      889


Q ss_pred             cccCcccccCcCCCCEEeCCCCcccccCCccccCCCCCCeEEcccCcCcccCCCCCC-CCccCCcccCCCCCCC--Ccc
Q 004704          571 SGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPDKGQ-FATFDESSYRGNPSLC--AWL  646 (735)
Q Consensus       571 ~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~-~~~~~~~~~~gN~~lc--~~~  646 (735)
                      .+.+|..|+++++|+.|+|++|++ +.+|..+.  ++|+.|||++|++....+..-. ........+.+|+..+  +|+
T Consensus       795 ~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~~I~gC~  870 (876)
T 4ecn_A          795 LRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDIRGCD  870 (876)
T ss_dssp             CCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTSEEESCG
T ss_pred             cccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCCCccccCCCC
Confidence            999999999999999999999999 68998876  6999999999999766543210 0112233455666554  554

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=7.7e-46  Score=413.21  Aligned_cols=453  Identities=19%  Similarity=0.215  Sum_probs=335.3

Q ss_pred             EEEeeCCCCCCCCchhhhCCCCCCEEEccCCcCcccCchHHHhCCCCCcEEECcCCcCcccCcCCcCCCCCcCEEEccCC
Q 004704           98 VLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCN  177 (735)
Q Consensus        98 ~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n  177 (735)
                      ++++++|+++ .+|..+.  ++|++|++++|.++ .++...+.++++|++|++++|++++..|..+..+++|++|++++|
T Consensus         4 ~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N   79 (520)
T 2z7x_B            4 LVDRSKNGLI-HVPKDLS--QKTTILNISQNYIS-ELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN   79 (520)
T ss_dssp             EEECTTSCCS-SCCCSCC--TTCSEEECCSSCCC-CCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred             eEecCCCCcc-ccccccc--ccccEEECCCCccc-ccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence            3444444444 2333332  45666666666665 333233345666666666666666665566666666666666666


Q ss_pred             cCCCcCChhHHHhcccCcEEECcCCcCCC-CCCcccCCCCCCCEEECCCccccCccchhhhhCCCCC--CEEEccCCCC-
Q 004704          178 NFRGKLPHNMGVILQKLMYMDISKNCFEG-NIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSL--ELLDLSNNNF-  253 (735)
Q Consensus       178 ~l~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L--~~L~L~~n~l-  253 (735)
                      +++ .+|..   .+++|++|++++|.+++ .+|..++++++|++|++++|.+++    ..+..+++|  ++|++++|.+ 
T Consensus        80 ~l~-~lp~~---~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~----~~~~~l~~L~L~~L~l~~n~l~  151 (520)
T 2z7x_B           80 KLV-KISCH---PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK----SSVLPIAHLNISKVLLVLGETY  151 (520)
T ss_dssp             CCC-EEECC---CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG----GGGGGGTTSCEEEEEEEECTTT
T ss_pred             cee-ecCcc---ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch----hhccccccceeeEEEeeccccc
Confidence            666 55555   36677777777777765 466777778888888888887764    223456667  8888888888 


Q ss_pred             -CCcCcccccCCC-CCCEEEccccccCccccc-cccCCCCCCEEEeeCCc-------cCCCCCchhhhhcccCcEEEcCC
Q 004704          254 -EGQFFSEYMNLT-RLRHLYFENNNFSGKIKD-GLLSSTSLQVLDISNNM-------LSGHIPHWMGNFSSELEILSMSK  323 (735)
Q Consensus       254 -~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~-~l~~~~~L~~L~l~~n~-------l~~~~p~~~~~~~~~L~~L~l~~  323 (735)
                       .+..|..+..+. +...+++++|.+.+.+++ .+..+++|+.+++++|.       +.+.+| .+..++. |+.|++++
T Consensus       152 ~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~-L~~L~l~~  229 (520)
T 2z7x_B          152 GEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPK-LSNLTLNN  229 (520)
T ss_dssp             TSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTT-CCEEEEEE
T ss_pred             ccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccc-hhhccccc
Confidence             666666666655 334567778877655443 56778999999999987       555555 6777776 99999999


Q ss_pred             CcCCCCCCccCC---CCCCCCEEEcccCCCCccCCCc------cCCCCccEEEccCCcccccCc-ccccCC---CCCcEE
Q 004704          324 NHLEGNVPVQLN---NLERLRILDISENRLSGPIASS------LNLSSVEHLSLQKNALNGLIP-GELFRS---CKLVTL  390 (735)
Q Consensus       324 n~l~~~~~~~l~---~l~~L~~L~L~~n~l~~~~~~~------~~l~~L~~L~l~~n~l~~~~~-~~~~~~---~~L~~L  390 (735)
                      |.+++..+..+.   ..++|++|++++|++++.+|..      ..+++|+.+++++|.+  .+| ..+..+   .+|+.|
T Consensus       230 ~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L  307 (520)
T 2z7x_B          230 IETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNF  307 (520)
T ss_dssp             EEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEE
T ss_pred             cccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEE
Confidence            988753222111   2468999999999999766654      4688999999999999  344 444444   689999


Q ss_pred             eCCCCcccccCChhhhCCCCccEEEccCCcCCCCCchhhhcCCCCCEEECcCCcCCC--CCCchhhcccccccccCCccC
Q 004704          391 NLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSG--SIPPCFANVLSWRVGSDDVLN  468 (735)
Q Consensus       391 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~l~~~~~~~~~  468 (735)
                      ++++|.+....  ....+++|++|++++|++++.+|..+..+++|+.|++++|++++  .+|..+..             
T Consensus       308 ~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~-------------  372 (520)
T 2z7x_B          308 TVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQ-------------  372 (520)
T ss_dssp             EEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTT-------------
T ss_pred             EcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhh-------------
Confidence            99999987432  12678999999999999999899999999999999999999985  23333332             


Q ss_pred             CCCCCCcccchhhhcccCCCCCCCccccchhhhhhhhhhhhccccceeEEEEeccccccccCCcccccceEECCCCcccC
Q 004704          469 GSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTG  548 (735)
Q Consensus       469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~  548 (735)
                                                                                      +++|+.||+++|++++
T Consensus       373 ----------------------------------------------------------------l~~L~~L~Ls~N~l~~  388 (520)
T 2z7x_B          373 ----------------------------------------------------------------MKSLQQLDISQNSVSY  388 (520)
T ss_dssp             ----------------------------------------------------------------CTTCCEEECCSSCCBC
T ss_pred             ----------------------------------------------------------------CCCCCEEECCCCcCCc
Confidence                                                                            3678999999999998


Q ss_pred             CCCcc-ccccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccCCccccCCCCCCeEEcccCcCcccCCC-CC
Q 004704          549 EIPSD-IGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPD-KG  626 (735)
Q Consensus       549 ~~p~~-l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~-~~  626 (735)
                      .+|.. +..+++|++|++++|++++.+|..+.  ++|++|||++|+++ .+|..+..+++|++|++++|++++..+. ..
T Consensus       389 ~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~  465 (520)
T 2z7x_B          389 DEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFD  465 (520)
T ss_dssp             CGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTT
T ss_pred             ccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhc
Confidence            67764 88999999999999999988888775  79999999999999 8999888999999999999999964444 45


Q ss_pred             CCCccCCcccCCCCCCCCcccc
Q 004704          627 QFATFDESSYRGNPSLCAWLIQ  648 (735)
Q Consensus       627 ~~~~~~~~~~~gN~~lc~~~~~  648 (735)
                      .+..+....+.|||+.|+|+..
T Consensus       466 ~l~~L~~L~l~~N~~~c~c~~~  487 (520)
T 2z7x_B          466 RLTSLQKIWLHTNPWDCSCPRI  487 (520)
T ss_dssp             TCTTCCEEECCSSCBCCCHHHH
T ss_pred             cCCcccEEECcCCCCcccCCch
Confidence            5667778889999999988653

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=2.9e-44  Score=411.42  Aligned_cols=524  Identities=20%  Similarity=0.192  Sum_probs=410.0

Q ss_pred             CCCCCccccccCCCCCCCEEeCCCCcCCCCcchhhhCCCCCCEEeCCCCcccccCChhhhhcCCCCCeeecccccccccc
Q 004704            6 NFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHV   85 (735)
Q Consensus         6 n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~~   85 (735)
                      .+++ .+|..+.  +++++|||++|+|++..|.+|.++++|++|||++|+|++ ++..+|.++++|++|+|++|.+. .+
T Consensus        41 ~~l~-~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~-i~~~~f~~L~~L~~L~Ls~N~l~-~l  115 (635)
T 4g8a_A           41 LNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT-IEDGAYQSLSHLSTLILTGNPIQ-SL  115 (635)
T ss_dssp             SCCS-SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCE-ECTTTTTTCTTCCEEECTTCCCC-EE
T ss_pred             CCcC-ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCC-cChhHhcCCCCCCEEEccCCcCC-CC
Confidence            3454 4565543  479999999999997777899999999999999999984 55478999999999999998764 45


Q ss_pred             cCCCCCCCCCeeEEEeeCCCCCCCCchhhhCCCCCCEEEccCCcCccc-CchHHHhCCCCCcEEECcCCcCcccCcCCcC
Q 004704           86 KTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGN-FPTWLLRNNPKLEVLLLKNNSFSGILQLPKA  164 (735)
Q Consensus        86 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  164 (735)
                      +...|..+++|++|+|++|++++..+..|+++++|++|++++|.+++. +|.. +..+++|++|++++|++++..+..+.
T Consensus       116 ~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~~~l~  194 (635)
T 4g8a_A          116 ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSIYCTDLR  194 (635)
T ss_dssp             CGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECCSSCCCEECGGGGH
T ss_pred             CHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchh-hccchhhhhhcccCcccccccccccc
Confidence            566688899999999999999988788899999999999999998743 4544 45899999999999999988877776


Q ss_pred             CCCC----cCEEEccCCcCCCcCChhHHHhcccCcEEECcCCcCCCC-CCcccCCCCCCCEEECCCccccC-----ccch
Q 004704          165 KHDF----LHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGN-IPYSAGEMKELSLLDLSRNYFSG-----GLSQ  234 (735)
Q Consensus       165 ~~~~----L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~-----~~~~  234 (735)
                      .+.+    ...++++.|.++ .++...+. ...++.+++.+|..... .+..+..+..++...+..+....     ....
T Consensus       195 ~L~~l~~~~~~~~ls~n~l~-~i~~~~~~-~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~  272 (635)
T 4g8a_A          195 VLHQMPLLNLSLDLSLNPMN-FIQPGAFK-EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDK  272 (635)
T ss_dssp             HHHTCTTCCCEEECTTCCCC-EECTTTTT-TCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCT
T ss_pred             chhhhhhhhhhhhcccCccc-ccCccccc-chhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccc
Confidence            5544    347889999988 55555555 34677888888765432 23445667777766654332211     1222


Q ss_pred             hhhhCCCCCCEEEccCCCCCC---cCcccccCCCCCCEEEccccccCccccccccCCCCCCEEEeeCCccCCCCCchhhh
Q 004704          235 SVVTGCFSLELLDLSNNNFEG---QFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGN  311 (735)
Q Consensus       235 ~~~~~l~~L~~L~L~~n~l~~---~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~  311 (735)
                      ..+..+..+...++..+....   .....+..+.+++.+++.++.+....  .+.....++.|++.+|.+.+..+.   .
T Consensus       273 ~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~---~  347 (635)
T 4g8a_A          273 SALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVK--DFSYNFGWQHLELVNCKFGQFPTL---K  347 (635)
T ss_dssp             TTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECG--GGGSCCCCSEEEEESCEESSCCCC---B
T ss_pred             cccccccchhhhhhhhhhhcccccchhhhhhhhccccccccccccccccc--ccccchhhhhhhcccccccCcCcc---c
Confidence            223445566666665544332   23345566788999999999887432  356678999999999998744332   2


Q ss_pred             hcccCcEEEcCCCcCCCCCCccCCCCCCCCEEEcccCCCCccCC--Ccc-CCCCccEEEccCCcccccCcccccCCCCCc
Q 004704          312 FSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIA--SSL-NLSSVEHLSLQKNALNGLIPGELFRSCKLV  388 (735)
Q Consensus       312 ~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~  388 (735)
                      +.. |+.+++..|.+...  .....+++|+.+++++|.+.....  ... .+.+|+.+++..+..... +..+..+++|+
T Consensus       348 l~~-L~~l~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~-~~~~~~l~~L~  423 (635)
T 4g8a_A          348 LKS-LKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITM-SSNFLGLEQLE  423 (635)
T ss_dssp             CTT-CCEEEEESCCSCCB--CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEE-CSCCTTCTTCC
T ss_pred             chh-hhhcccccccCCCC--cccccccccccchhhccccccccccccchhhhhhhhhhhccccccccc-ccccccccccc
Confidence            334 89999999987643  334578999999999999865332  222 788999999999988754 55678899999


Q ss_pred             EEeCCCCcccccCC-hhhhCCCCccEEEccCCcCCCCCchhhhcCCCCCEEECcCCcCCC-CCCchhhcccccccccCCc
Q 004704          389 TLNLRDNTFSGRIP-HQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSG-SIPPCFANVLSWRVGSDDV  466 (735)
Q Consensus       389 ~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~l~~~~~~~  466 (735)
                      .+++..+......+ ..+..+++++.++++.|.+.+..+..+..++.|+.|++++|++.+ ..|..+..           
T Consensus       424 ~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~-----------  492 (635)
T 4g8a_A          424 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE-----------  492 (635)
T ss_dssp             EEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTT-----------
T ss_pred             chhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhh-----------
Confidence            99999988775544 567889999999999999999899999999999999999998543 34443332           


Q ss_pred             cCCCCCCCcccchhhhcccCCCCCCCccccchhhhhhhhhhhhccccceeEEEEeccccccccCCcccccceEECCCCcc
Q 004704          467 LNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQL  546 (735)
Q Consensus       467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l  546 (735)
                                                                                        +++|+.|||++|++
T Consensus       493 ------------------------------------------------------------------l~~L~~L~Ls~N~L  506 (635)
T 4g8a_A          493 ------------------------------------------------------------------LRNLTFLDLSQCQL  506 (635)
T ss_dssp             ------------------------------------------------------------------CTTCCEEECTTSCC
T ss_pred             ------------------------------------------------------------------ccccCEEECCCCcc
Confidence                                                                              46788999999999


Q ss_pred             cCCCCccccccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccCCccccCC-CCCCeEEcccCcCcccCC
Q 004704          547 TGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTAL-NFLSIFNVSYNNLSGRTP  623 (735)
Q Consensus       547 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l-~~L~~L~ls~N~l~~~~p  623 (735)
                      ++..|..|+++++|++|+|++|+|++.+|..|+++++|++|||++|++++..|+.+..+ ++|++|++++|+++|.+.
T Consensus       507 ~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~  584 (635)
T 4g8a_A          507 EQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE  584 (635)
T ss_dssp             CEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGG
T ss_pred             CCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCC
Confidence            99999999999999999999999999999999999999999999999999999999998 689999999999998775

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=1.5e-43  Score=398.00  Aligned_cols=461  Identities=20%  Similarity=0.226  Sum_probs=294.6

Q ss_pred             CCCCEEeCCCCcCCCCcchhhhCCCCCCEEeCCCCcccccCChhhhhcCCCCCeeecccccccccccCCCCCCCCCeeEE
Q 004704           20 TRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVL   99 (735)
Q Consensus        20 ~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L   99 (735)
                      ...+++|+++|++++ +|..+.  ++|++|++++|.+++..+ ..|                         ..+++|++|
T Consensus        31 ~~~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~-~~~-------------------------~~l~~L~~L   81 (562)
T 3a79_B           31 ELESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRM-PDI-------------------------SFLSELRVL   81 (562)
T ss_dssp             --CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCG-GGT-------------------------TTCTTCCEE
T ss_pred             CCCcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccCh-hhh-------------------------ccCCCccEE
Confidence            334566666666663 454332  566666666666653222 333                         344455555


Q ss_pred             EeeCCCCCCCCchhhhCCCCCCEEEccCCcCcccCchHHHhCCCCCcEEECcCCcCccc-CcCCcCCCCCcCEEEccCCc
Q 004704          100 GLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGI-LQLPKAKHDFLHHLDISCNN  178 (735)
Q Consensus       100 ~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~~~~L~~L~Ls~n~  178 (735)
                      +|++|++++..|.+|.++++|++||+++|+++ .+|..   .+++|++|++++|++++. .|..+..+++|++|++++|.
T Consensus        82 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~  157 (562)
T 3a79_B           82 RLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAK  157 (562)
T ss_dssp             ECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSB
T ss_pred             ECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc---ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCc
Confidence            55555566556666777777777777777776 56654   567777777777777664 24566677777777777776


Q ss_pred             CCCcCChhHHHhcccC--cEEECcCCcC--CCCCCcccCCCC--CCCEEECCCccccCccchhhhhCCCCCCEEEccCCC
Q 004704          179 FRGKLPHNMGVILQKL--MYMDISKNCF--EGNIPYSAGEMK--ELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNN  252 (735)
Q Consensus       179 l~~~~~~~~~~~l~~L--~~L~L~~n~l--~~~~~~~l~~l~--~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~  252 (735)
                      +++.   .+. .+++|  ++|++++|.+  ++..|..+..++  .+ .++++.|.+.+.++...+..+++|+.+++++|.
T Consensus       158 l~~~---~~~-~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l-~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~  232 (562)
T 3a79_B          158 FRQL---DLL-PVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVL-HLVFHPNSLFSVQVNMSVNALGHLQLSNIKLND  232 (562)
T ss_dssp             CCTT---TTG-GGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEE-EEEECSSSCCCCCCEEEESSEEEEEEEEEECCS
T ss_pred             cccC---chh-hhhhceeeEEEeecccccccccCcccccccCcceE-EEEecCccchhhhhhhcccccceEEEecccccc
Confidence            6532   111 13444  7777777766  555555554443  22 345555555544444444445555555555543


Q ss_pred             CCCcCcccccCCCCCCEEEccccccCccccccccCCCCCCEEEeeCCccCCC----CCchhhhhcccCcEEEcCCCcCCC
Q 004704          253 FEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGH----IPHWMGNFSSELEILSMSKNHLEG  328 (735)
Q Consensus       253 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~----~p~~~~~~~~~L~~L~l~~n~l~~  328 (735)
                      ....                   .+. .....+..++.|+.+++.++.+.+.    ++..+. .. +|++|++++|.+++
T Consensus       233 ~~~~-------------------~l~-~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~-~~-~L~~L~l~~n~l~~  290 (562)
T 3a79_B          233 ENCQ-------------------RLM-TFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFW-PR-PVEYLNIYNLTITE  290 (562)
T ss_dssp             TTHH-------------------HHH-HHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHT-TS-SEEEEEEEEEEECS
T ss_pred             cccc-------------------hHH-HHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhh-cc-cccEEEEeccEeec
Confidence            1100                   011 1112234444555555544444321    111111 11 26666666666665


Q ss_pred             CCCccC-----CCCCCCCEEEcccCCCCccCC-Ccc----CCCCccEEEccCCcccccCcccccCCCCCcEEeCCCCccc
Q 004704          329 NVPVQL-----NNLERLRILDISENRLSGPIA-SSL----NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFS  398 (735)
Q Consensus       329 ~~~~~l-----~~l~~L~~L~L~~n~l~~~~~-~~~----~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~  398 (735)
                      .+|..+     ..++.|+.+++..+.+  .++ ...    ...+|+.|++++|.+....  ....+++|++|++++|+++
T Consensus       291 ~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~  366 (562)
T 3a79_B          291 RIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFT  366 (562)
T ss_dssp             CCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCC
T ss_pred             cccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCccc
Confidence            555554     5555666666666655  222 111    2356888888888875432  1257788999999999999


Q ss_pred             ccCChhhhCCCCccEEEccCCcCCCC--CchhhhcCCCCCEEECcCCcCCCCCCchhhcccccccccCCccCCCCCCCcc
Q 004704          399 GRIPHQINEHSNLRFLLLGGNHLQGP--IPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPE  476 (735)
Q Consensus       399 ~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~  476 (735)
                      +..|..+..+++|++|++++|++++.  +|..+..+++|+.|++++|++++.+|....                      
T Consensus       367 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~----------------------  424 (562)
T 3a79_B          367 DSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTC----------------------  424 (562)
T ss_dssp             TTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCC----------------------
T ss_pred             cchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhh----------------------
Confidence            88888899999999999999999863  346788999999999999999875654311                      


Q ss_pred             cchhhhcccCCCCCCCccccchhhhhhhhhhhhccccceeEEEEeccccccccCCcccccceEECCCCcccCCCCccccc
Q 004704          477 LDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQ  556 (735)
Q Consensus       477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~  556 (735)
                                                                            ..+++|+.|++++|++++.+|..+. 
T Consensus       425 ------------------------------------------------------~~l~~L~~L~l~~n~l~~~~~~~l~-  449 (562)
T 3a79_B          425 ------------------------------------------------------AWAESILVLNLSSNMLTGSVFRCLP-  449 (562)
T ss_dssp             ------------------------------------------------------CCCTTCCEEECCSSCCCGGGGSSCC-
T ss_pred             ------------------------------------------------------cCcccCCEEECCCCCCCcchhhhhc-
Confidence                                                                  1236788899999999887777665 


Q ss_pred             cccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccCCcc-ccCCCCCCeEEcccCcCcccCCC
Q 004704          557 LQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQ-LTALNFLSIFNVSYNNLSGRTPD  624 (735)
Q Consensus       557 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~-l~~l~~L~~L~ls~N~l~~~~p~  624 (735)
                       ++|++|+|++|+++ .+|..+.++++|++|||++|+++ .+|.. +..+++|++|++++|+++|.+|.
T Consensus       450 -~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~~  515 (562)
T 3a79_B          450 -PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCPG  515 (562)
T ss_dssp             -TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCCHHH
T ss_pred             -CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCCcch
Confidence             78999999999999 67777779999999999999999 46655 89999999999999999987764

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=2.6e-42  Score=387.89  Aligned_cols=455  Identities=21%  Similarity=0.208  Sum_probs=301.4

Q ss_pred             CcCCCCCCCCccccccCCCCCCCEEeCCCCcCCCCcchhhhCCCCCCEEeCCCCcccccCChhhhhcCCCCCeeeccccc
Q 004704            1 MNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRN   80 (735)
Q Consensus         1 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~~~   80 (735)
                      +|+++|++++ +|..+.  ++|++|+|++|.+++..|.+|+++++|++|++++|++++..| ..|.++++|++|++++|.
T Consensus        36 l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~  111 (562)
T 3a79_B           36 VDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDF-HVFLFNQDLEYLDVSHNR  111 (562)
T ss_dssp             EECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECT-TTTTTCTTCCEEECTTSC
T ss_pred             EEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCH-HHhCCCCCCCEEECCCCc
Confidence            5789999996 676664  899999999999998888999999999999999999986655 678899999999999887


Q ss_pred             ccccccCCCCCCCCCeeEEEeeCCCCCC-CCchhhhCCCCCCEEEccCCcCcccCchHHHhCCCCC--cEEECcCCcC--
Q 004704           81 NTLHVKTENWLPTSQLIVLGLTKCNLNG-SYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKL--EVLLLKNNSF--  155 (735)
Q Consensus        81 ~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L--~~L~L~~n~l--  155 (735)
                      +. .++..   .+++|++|++++|++++ .+|..+.++++|++|++++|++++. .   +..+++|  ++|++++|.+  
T Consensus       112 l~-~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~-~---~~~l~~L~L~~L~L~~n~l~~  183 (562)
T 3a79_B          112 LQ-NISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL-D---LLPVAHLHLSCILLDLVSYHI  183 (562)
T ss_dssp             CC-EECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT-T---TGGGTTSCEEEEEEEESSCCC
T ss_pred             CC-ccCcc---ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC-c---hhhhhhceeeEEEeecccccc
Confidence            65 44443   67778888888887776 3457777777788888887777632 1   2234444  7777777766  


Q ss_pred             cccCcCCcCCCC--CcCEEEccCCcCCCcCChhHHHhcccCcEEECcCCcCCCCCCcccCCCCCCCEEECCCccccCccc
Q 004704          156 SGILQLPKAKHD--FLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLS  233 (735)
Q Consensus       156 ~~~~~~~~~~~~--~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~  233 (735)
                      ++..+..+..+.  .+ .+++++|.+.+.++...+..+++|+.+++++|...-                   ..+.+.+ 
T Consensus       184 ~~~~~~~l~~l~~~~l-~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~-------------------~~l~~~~-  242 (562)
T 3a79_B          184 KGGETESLQIPNTTVL-HLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENC-------------------QRLMTFL-  242 (562)
T ss_dssp             CSSSCCEEEECCEEEE-EEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTH-------------------HHHHHHH-
T ss_pred             cccCcccccccCcceE-EEEecCccchhhhhhhcccccceEEEeccccccccc-------------------chHHHHH-
Confidence            555555444432  12 345555555544444444334455555555442100                   0011111 


Q ss_pred             hhhhhCCCCCCEEEccCCCCCCcC----cccccCCCCCCEEEccccccCccccccc-----cCCCCCCEEEeeCCccCCC
Q 004704          234 QSVVTGCFSLELLDLSNNNFEGQF----FSEYMNLTRLRHLYFENNNFSGKIKDGL-----LSSTSLQVLDISNNMLSGH  304 (735)
Q Consensus       234 ~~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~~~l-----~~~~~L~~L~l~~n~l~~~  304 (735)
                       ..+..++.|+.++++++.+.+..    +.. ...++|++|++++|.+++.+|..+     ..++.|+.+++..+.+  .
T Consensus       243 -~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~  318 (562)
T 3a79_B          243 -SELTRGPTLLNVTLQHIETTWKCSVKLFQF-FWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--L  318 (562)
T ss_dssp             -HHHHSCSSCEEEEEEEEEECHHHHHHHHHH-HTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--S
T ss_pred             -HHHhccCcceEEEecCCcCcHHHHHHHHHh-hhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--e
Confidence             11234455555555544443211    111 122356666666666665555554     4444555555555554  3


Q ss_pred             CC-chhhhh---cccCcEEEcCCCcCCCCCCccCCCCCCCCEEEcccCCCCccCCCccCCCCccEEEccCCcccccCccc
Q 004704          305 IP-HWMGNF---SSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGE  380 (735)
Q Consensus       305 ~p-~~~~~~---~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  380 (735)
                      +| ..+...   .. |++|++++|.+.                        .... ...+++|++|++++|.+++..|..
T Consensus       319 ~p~~~~~~~~~~~~-L~~L~l~~n~~~------------------------~~~~-~~~l~~L~~L~l~~n~l~~~~~~~  372 (562)
T 3a79_B          319 FSKEALYSVFAEMN-IKMLSISDTPFI------------------------HMVC-PPSPSSFTFLNFTQNVFTDSVFQG  372 (562)
T ss_dssp             SCHHHHHHHHHTCC-CSEEEEESSCCC------------------------CCCC-CSSCCCCCEEECCSSCCCTTTTTT
T ss_pred             cChhhhhhhhccCc-ceEEEccCCCcc------------------------cccC-ccCCCCceEEECCCCccccchhhh
Confidence            34 222222   22 555555555443                        2110 024556666666666666666777


Q ss_pred             ccCCCCCcEEeCCCCcccc--cCChhhhCCCCccEEEccCCcCCCCCc-hhhhcCCCCCEEECcCCcCCCCCCchhhccc
Q 004704          381 LFRSCKLVTLNLRDNTFSG--RIPHQINEHSNLRFLLLGGNHLQGPIP-DQLCQLQKLAMMDLSRNKFSGSIPPCFANVL  457 (735)
Q Consensus       381 ~~~~~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~  457 (735)
                      +..+++|++|++++|++++  .+|..+..+++|++|++++|.+++.+| ..+..+++|+.|++++|++++.+|..+.   
T Consensus       373 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~---  449 (562)
T 3a79_B          373 CSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP---  449 (562)
T ss_dssp             CCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC---
T ss_pred             hcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc---
Confidence            7777888888888888875  234667888889999999999887444 4578889999999999998765443221   


Q ss_pred             ccccccCCccCCCCCCCcccchhhhcccCCCCCCCccccchhhhhhhhhhhhccccceeEEEEeccccccccCCcccccc
Q 004704          458 SWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVT  537 (735)
Q Consensus       458 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~  537 (735)
                                                                                                  ++|+
T Consensus       450 ----------------------------------------------------------------------------~~L~  453 (562)
T 3a79_B          450 ----------------------------------------------------------------------------PKVK  453 (562)
T ss_dssp             ----------------------------------------------------------------------------TTCS
T ss_pred             ----------------------------------------------------------------------------CcCC
Confidence                                                                                        3678


Q ss_pred             eEECCCCcccCCCCccccccccCCeEeCCCCcCcccCccc-ccCcCCCCEEeCCCCcccccCC
Q 004704          538 GLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPES-FSNLKMIESLDISYNKLTGQIP  599 (735)
Q Consensus       538 ~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~LdLs~N~l~~~~p  599 (735)
                      .|+|++|+++ .+|..+..+++|++|+|++|++++ +|.. |..+++|+.|++++|.+.+..|
T Consensus       454 ~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~c~  514 (562)
T 3a79_B          454 VLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKS-VPDGVFDRLTSLQYIWLHDNPWDCTCP  514 (562)
T ss_dssp             EEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCC-CCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred             EEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCC-CCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence            8999999999 788888899999999999999995 5554 9999999999999999987654

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=3.7e-41  Score=369.02  Aligned_cols=375  Identities=19%  Similarity=0.219  Sum_probs=294.1

Q ss_pred             CEEEccCCcCCCcCChhHHHhcccCcEEECcCCcCCCCCCcccCCCCCCCEEECCCccccCccchhhhhCCCCCCEEEcc
Q 004704          170 HHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLS  249 (735)
Q Consensus       170 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~  249 (735)
                      +.++.+++.++ .+|. +   .++|++|++++|.+++..|..+.++++|++|++++|.+.+.++...+.++++|++|+++
T Consensus        13 ~~~~c~~~~l~-~lp~-l---~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls   87 (455)
T 3v47_A           13 YNAICINRGLH-QVPE-L---PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD   87 (455)
T ss_dssp             TEEECCSSCCS-SCCC-C---CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECT
T ss_pred             cccCcCCCCcc-cCCC-C---CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCC
Confidence            35666666666 6665 2   35788888888888776677788888888888888887766766667778888888888


Q ss_pred             CCCCCCcCcccccCCCCCCEEEccccccCcccccc--ccCCCCCCEEEeeCCccCCCCCch-hhhhcccCcEEEcCCCcC
Q 004704          250 NNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDG--LLSSTSLQVLDISNNMLSGHIPHW-MGNFSSELEILSMSKNHL  326 (735)
Q Consensus       250 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--l~~~~~L~~L~l~~n~l~~~~p~~-~~~~~~~L~~L~l~~n~l  326 (735)
                      +|.+++..|..|.++++|++|++++|.+++..+..  +..+++|++|++++|.+++..|.. +..++. |++|++++|++
T Consensus        88 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~-L~~L~L~~n~l  166 (455)
T 3v47_A           88 YNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRR-FHVLDLTFNKV  166 (455)
T ss_dssp             TCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTT-CCEEECTTCCB
T ss_pred             CCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCc-ccEEeCCCCcc
Confidence            88888777778888888888888888887644444  777888888888888888666665 566655 88888888888


Q ss_pred             CCCCCccCCCC--CCCCEEEcccCCCCccCCCc---------cCCCCccEEEccCCcccccCcccccCC---CCCcEEeC
Q 004704          327 EGNVPVQLNNL--ERLRILDISENRLSGPIASS---------LNLSSVEHLSLQKNALNGLIPGELFRS---CKLVTLNL  392 (735)
Q Consensus       327 ~~~~~~~l~~l--~~L~~L~L~~n~l~~~~~~~---------~~l~~L~~L~l~~n~l~~~~~~~~~~~---~~L~~L~l  392 (735)
                      ++..+..+..+  .+|+.|++++|.+.+..+..         +.+++|+.|++++|.+.+..|..+...   ++|+.|++
T Consensus       167 ~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l  246 (455)
T 3v47_A          167 KSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLIL  246 (455)
T ss_dssp             SCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEEC
T ss_pred             cccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEee
Confidence            87777776655  67888888888877654432         245778888888888887777666543   78888888


Q ss_pred             CCCccccc----------CChhhhC--CCCccEEEccCCcCCCCCchhhhcCCCCCEEECcCCcCCCCCCchhhcccccc
Q 004704          393 RDNTFSGR----------IPHQINE--HSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWR  460 (735)
Q Consensus       393 ~~n~l~~~----------~~~~~~~--l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~  460 (735)
                      ++|.+.+.          .+..+..  .++|++|++++|.+.+..|..+..+++|+.|++++|++++..|..+..+    
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l----  322 (455)
T 3v47_A          247 SNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGL----  322 (455)
T ss_dssp             TTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTC----
T ss_pred             ccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCc----
Confidence            88765432          1222222  3689999999999998888899999999999999999987766665442    


Q ss_pred             cccCCccCCCCCCCcccchhhhcccCCCCCCCccccchhhhhhhhhhhhccccceeEEEEeccccccccCCcccccceEE
Q 004704          461 VGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLD  540 (735)
Q Consensus       461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~Ld  540 (735)
                                                                                               ++|+.|+
T Consensus       323 -------------------------------------------------------------------------~~L~~L~  329 (455)
T 3v47_A          323 -------------------------------------------------------------------------THLLKLN  329 (455)
T ss_dssp             -------------------------------------------------------------------------TTCCEEE
T ss_pred             -------------------------------------------------------------------------ccCCEEE
Confidence                                                                                     5788899


Q ss_pred             CCCCcccCCCCccccccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccCCccccCCCCCCeEEcccCcCcc
Q 004704          541 LSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSG  620 (735)
Q Consensus       541 Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~  620 (735)
                      |++|++++..|..++.+++|++|+|++|++++..|..|+++++|++|||++|++++..+..+..+++|++|++++|+++|
T Consensus       330 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~  409 (455)
T 3v47_A          330 LSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  409 (455)
T ss_dssp             CCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             CCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCccc
Confidence            99999988888889999999999999999998889999999999999999999998777788999999999999999999


Q ss_pred             cCCCCCC
Q 004704          621 RTPDKGQ  627 (735)
Q Consensus       621 ~~p~~~~  627 (735)
                      .+|....
T Consensus       410 ~~~~~~~  416 (455)
T 3v47_A          410 SCPRIDY  416 (455)
T ss_dssp             CTTTTHH
T ss_pred             CCCcchH
Confidence            9886443

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=1.2e-40  Score=361.67  Aligned_cols=421  Identities=24%  Similarity=0.302  Sum_probs=200.5

Q ss_pred             CCCCCCEEeCCCCcCCCCcchhhhCCCCCCEEeCCCCcccccCChhhhhcCCCCCeeecccccccccccCCCCCCCCCee
Q 004704           18 NLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLI   97 (735)
Q Consensus        18 ~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~   97 (735)
                      +.++|++|++++|.+ +.+|++++++++|++|++++|.++|.+| ..++++++|+.+++..|..            .+++
T Consensus         9 ~~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p-~~~~~l~~L~~l~l~~c~~------------~~l~   74 (454)
T 1jl5_A            9 SNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAP-PGNGEQREMAVSRLRDCLD------------RQAH   74 (454)
T ss_dssp             --------------------------CCHHHHHHHHHHHHHTSC-TTSCCCHHHHHHHHHHHHH------------HTCS
T ss_pred             ccccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCC-cccccchhcchhhhhhhhc------------cCCC
Confidence            468999999999999 6899999999999999999999998888 4677777777777665432            3556


Q ss_pred             EEEeeCCCCCCCCchhhhCCCCCCEEEccCCcCcccCchHHHhCCCCCcEEECcCCcCcccCcCCcCCCCCcCEEEccCC
Q 004704           98 VLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCN  177 (735)
Q Consensus        98 ~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n  177 (735)
                      +|++++|++++ +|..   .++|++|++++|.+++ +|.    ..++|++|++++|+++++                   
T Consensus        75 ~L~l~~~~l~~-lp~~---~~~L~~L~l~~n~l~~-lp~----~~~~L~~L~l~~n~l~~l-------------------  126 (454)
T 1jl5_A           75 ELELNNLGLSS-LPEL---PPHLESLVASCNSLTE-LPE----LPQSLKSLLVDNNNLKAL-------------------  126 (454)
T ss_dssp             EEECTTSCCSC-CCSC---CTTCSEEECCSSCCSS-CCC----CCTTCCEEECCSSCCSCC-------------------
T ss_pred             EEEecCCcccc-CCCC---cCCCCEEEccCCcCCc-ccc----ccCCCcEEECCCCccCcc-------------------
Confidence            66666666654 2221   2456666666666653 543    234555555555555443                   


Q ss_pred             cCCCcCChhHHHhcccCcEEECcCCcCCCCCCcccCCCCCCCEEECCCccccCccchhhhhCCCCCCEEEccCCCCCCcC
Q 004704          178 NFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQF  257 (735)
Q Consensus       178 ~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~  257 (735)
                            |..    .++|++|++++|.+++ +| .++++++|++|++++|++++ +|..    ..+|++|++++|.+++ +
T Consensus       127 ------~~~----~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~----~~~L~~L~L~~n~l~~-l  188 (454)
T 1jl5_A          127 ------SDL----PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDL----PPSLEFIAAGNNQLEE-L  188 (454)
T ss_dssp             ------CSC----CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCC----CTTCCEEECCSSCCSS-C
T ss_pred             ------cCC----CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCC----cccccEEECcCCcCCc-C
Confidence                  211    1344555555554443 34 34555555555555555442 3321    2355555555555554 2


Q ss_pred             cccccCCCCCCEEEccccccCccccccccCCCCCCEEEeeCCccCCCCCchhhhhcccCcEEEcCCCcCCCCCCccCCCC
Q 004704          258 FSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNL  337 (735)
Q Consensus       258 ~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l  337 (735)
                      | .+.++++|++|++++|.+++ +|..   .++|++|++++|.++ .+|. ++.++. |++|++++|++++ +|..   .
T Consensus       189 ~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp~-~~~l~~-L~~L~l~~N~l~~-l~~~---~  256 (454)
T 1jl5_A          189 P-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE-ELPE-LQNLPF-LTTIYADNNLLKT-LPDL---P  256 (454)
T ss_dssp             C-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-SCCC-CTTCTT-CCEEECCSSCCSS-CCSC---C
T ss_pred             c-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-cccc-cCCCCC-CCEEECCCCcCCc-cccc---c
Confidence            2 35555555555555555553 2322   135566666666555 4553 444444 6666666665553 2321   2


Q ss_pred             CCCCEEEcccCCCCccCCCccCCCCccEEEccCCcccccCcccccCCCCCcEEeCCCCcccccCChhhhCC-CCccEEEc
Q 004704          338 ERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEH-SNLRFLLL  416 (735)
Q Consensus       338 ~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~L  416 (735)
                      ++|++|++++|++++...   ..++|+.|++++|.+++. |.   ..++|+.|++++|++++ ++    .+ ++|++|++
T Consensus       257 ~~L~~L~l~~N~l~~l~~---~~~~L~~L~ls~N~l~~l-~~---~~~~L~~L~l~~N~l~~-i~----~~~~~L~~L~L  324 (454)
T 1jl5_A          257 PSLEALNVRDNYLTDLPE---LPQSLTFLDVSENIFSGL-SE---LPPNLYYLNASSNEIRS-LC----DLPPSLEELNV  324 (454)
T ss_dssp             TTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSEE-SC---CCTTCCEEECCSSCCSE-EC----CCCTTCCEEEC
T ss_pred             cccCEEECCCCcccccCc---ccCcCCEEECcCCccCcc-cC---cCCcCCEEECcCCcCCc-cc----CCcCcCCEEEC
Confidence            456666666666654222   135666666666666652 11   11467777777777764 22    22 47888888


Q ss_pred             cCCcCCCCCchhhhcCCCCCEEECcCCcCCCCCCchhhcccccccccCCccCCCCCCCcccchhhhcccCCCCCCCcccc
Q 004704          417 GGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMF  496 (735)
Q Consensus       417 ~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  496 (735)
                      ++|++++ +|..   +++|+.|++++|+++ .+|..                                            
T Consensus       325 s~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~~--------------------------------------------  355 (454)
T 1jl5_A          325 SNNKLIE-LPAL---PPRLERLIASFNHLA-EVPEL--------------------------------------------  355 (454)
T ss_dssp             CSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCCC--------------------------------------------
T ss_pred             CCCcccc-cccc---CCcCCEEECCCCccc-cccch--------------------------------------------
Confidence            8888875 5543   477888888888877 34330                                            


Q ss_pred             chhhhhhhhhhhhccccceeEEEEeccccccccCCcccccceEECCCCcccC--CCCccccccccCCeEeCCCCcCcccC
Q 004704          497 GMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTG--EIPSDIGQLQAILALNLSNNSLSGSI  574 (735)
Q Consensus       497 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~--~~p~~l~~l~~L~~L~Ls~N~l~~~~  574 (735)
                                                          +++|+.|++++|++++  .+|..++.+        +.|.+.+.+
T Consensus       356 ------------------------------------l~~L~~L~L~~N~l~~l~~ip~~l~~L--------~~n~~~~~i  391 (454)
T 1jl5_A          356 ------------------------------------PQNLKQLHVEYNPLREFPDIPESVEDL--------RMNSHLAEV  391 (454)
T ss_dssp             ------------------------------------CTTCCEEECCSSCCSSCCCCCTTCCEE--------ECCC-----
T ss_pred             ------------------------------------hhhccEEECCCCCCCcCCCChHHHHhh--------hhccccccc
Confidence                                                1457778888888887  667665543        346777777


Q ss_pred             cccccCcCCCCEEeCCCCcccc--cCCccccCCCCCCeEEcccCcCcccCCC
Q 004704          575 PESFSNLKMIESLDISYNKLTG--QIPPQLTALNFLSIFNVSYNNLSGRTPD  624 (735)
Q Consensus       575 p~~~~~l~~L~~LdLs~N~l~~--~~p~~l~~l~~L~~L~ls~N~l~~~~p~  624 (735)
                      |..   +++|++||+++|++++  .+|.+      ++.|.+.+|.+.+.+|.
T Consensus       392 ~~~---~~~L~~L~ls~N~l~~~~~iP~s------l~~L~~~~~~~~~~~~~  434 (454)
T 1jl5_A          392 PEL---PQNLKQLHVETNPLREFPDIPES------VEDLRMNSERVVDPYEF  434 (454)
T ss_dssp             ----------------------------------------------------
T ss_pred             ccc---cCcCCEEECCCCcCCccccchhh------HhheeCcCcccCCcccc
Confidence            763   5789999999999987  66654      55667888888887764

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=3.8e-40  Score=360.99  Aligned_cols=383  Identities=17%  Similarity=0.186  Sum_probs=263.1

Q ss_pred             EEEccCCcCcccCchHHHhCCCCCcEEECcCCcCcccCcCCcCCCCCcCEEEccCCcCCCcCChhHHHhcccCcEEECcC
Q 004704          122 YLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISK  201 (735)
Q Consensus       122 ~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~  201 (735)
                      .++.+++.++ .+|.    -.++|++|++++|.+++..+..+..+++|++|++++|.+.+.++...+..+++|++|++++
T Consensus        14 ~~~c~~~~l~-~lp~----l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~   88 (455)
T 3v47_A           14 NAICINRGLH-QVPE----LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY   88 (455)
T ss_dssp             EEECCSSCCS-SCCC----CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred             ccCcCCCCcc-cCCC----CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence            4555555555 5554    1255666666666666666666666666677777666665555554444466777777777


Q ss_pred             CcCCCCCCcccCCCCCCCEEECCCccccCccch-hhhhCCCCCCEEEccCCCCCCcCccc-ccCCCCCCEEEccccccCc
Q 004704          202 NCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQ-SVVTGCFSLELLDLSNNNFEGQFFSE-YMNLTRLRHLYFENNNFSG  279 (735)
Q Consensus       202 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~  279 (735)
                      |.+++..|..++++++|++|++++|.+++.++. ..+..+++|++|++++|.+++..|.. +.++++|++|++++|.+.+
T Consensus        89 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~  168 (455)
T 3v47_A           89 NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKS  168 (455)
T ss_dssp             CTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSC
T ss_pred             CccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccc
Confidence            776666666677777777777777766643332 22455666777777777766655544 5666677777777776666


Q ss_pred             cccccccCC--CCCCEEEeeCCccCCCCCchh--------hhhcccCcEEEcCCCcCCCCCCccCCC---CCCCCEEEcc
Q 004704          280 KIKDGLLSS--TSLQVLDISNNMLSGHIPHWM--------GNFSSELEILSMSKNHLEGNVPVQLNN---LERLRILDIS  346 (735)
Q Consensus       280 ~~~~~l~~~--~~L~~L~l~~n~l~~~~p~~~--------~~~~~~L~~L~l~~n~l~~~~~~~l~~---l~~L~~L~L~  346 (735)
                      ..+..+..+  ++|+.|++++|.+.+..+..+        ...+. |++|++++|++++..|..+..   .++|+.|+++
T Consensus       169 ~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~-L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~  247 (455)
T 3v47_A          169 ICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTS-ITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILS  247 (455)
T ss_dssp             CCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCE-EEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECT
T ss_pred             cChhhhhccccccccccccccCcccccchhhccccccccccccce-eeeEecCCCcccccchhhhhccccccceeeEeec
Confidence            555555443  566666666666664332221        12233 666666666666555544332   2566666666


Q ss_pred             cCCCCccCCCccCCCCccEEEccCCcccccCccccc--CCCCCcEEeCCCCcccccCChhhhCCCCccEEEccCCcCCCC
Q 004704          347 ENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELF--RSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGP  424 (735)
Q Consensus       347 ~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  424 (735)
                      +|...+.....             +.+.+..+..+.  ..++|+.|++++|.+++..|..+..+++|++|++++|.+.+.
T Consensus       248 ~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~  314 (455)
T 3v47_A          248 NSYNMGSSFGH-------------TNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKI  314 (455)
T ss_dssp             TCTTTSCCTTC-------------CSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEE
T ss_pred             cccccccccch-------------hhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCccccc
Confidence            66554322111             111111122222  236899999999999988888999999999999999999988


Q ss_pred             CchhhhcCCCCCEEECcCCcCCCCCCchhhcccccccccCCccCCCCCCCcccchhhhcccCCCCCCCccccchhhhhhh
Q 004704          425 IPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSA  504 (735)
Q Consensus       425 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  504 (735)
                      .|..+..+++|+.|++++|++++..|..+..                                                 
T Consensus       315 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-------------------------------------------------  345 (455)
T 3v47_A          315 DDNAFWGLTHLLKLNLSQNFLGSIDSRMFEN-------------------------------------------------  345 (455)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCEECGGGGTT-------------------------------------------------
T ss_pred             ChhHhcCcccCCEEECCCCccCCcChhHhcC-------------------------------------------------
Confidence            8888999999999999999998766665544                                                 


Q ss_pred             hhhhhccccceeEEEEeccccccccCCcccccceEECCCCcccCCCCccccccccCCeEeCCCCcCcccCcccccCcCCC
Q 004704          505 LEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMI  584 (735)
Q Consensus       505 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L  584 (735)
                                                  +++|+.|+|++|++++..|..|+.+++|++|+|++|++++..+..|+.+++|
T Consensus       346 ----------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  397 (455)
T 3v47_A          346 ----------------------------LDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSL  397 (455)
T ss_dssp             ----------------------------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred             ----------------------------cccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcc
Confidence                                        3578889999999998889999999999999999999998777888999999


Q ss_pred             CEEeCCCCcccccCCc
Q 004704          585 ESLDISYNKLTGQIPP  600 (735)
Q Consensus       585 ~~LdLs~N~l~~~~p~  600 (735)
                      ++|++++|++++..|.
T Consensus       398 ~~L~l~~N~l~~~~~~  413 (455)
T 3v47_A          398 QKIWLHTNPWDCSCPR  413 (455)
T ss_dssp             CEEECCSSCBCCCTTT
T ss_pred             cEEEccCCCcccCCCc
Confidence            9999999999988773

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=9.7e-40  Score=354.40  Aligned_cols=403  Identities=23%  Similarity=0.273  Sum_probs=226.5

Q ss_pred             CCCeeEEEeeCCCCCCCCchhhhCCCCCCEEEccCCcCcccCchHHHhCCCC-------------CcEEECcCCcCcccC
Q 004704           93 TSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPK-------------LEVLLLKNNSFSGIL  159 (735)
Q Consensus        93 ~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~-------------L~~L~L~~n~l~~~~  159 (735)
                      .+.|++|++++|++ +.+|..++++++|++|++++|.++|.+|..+. ++.+             +++|++++|.++++.
T Consensus        10 ~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~-~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp   87 (454)
T 1jl5_A           10 NTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNG-EQREMAVSRLRDCLDRQAHELELNNLGLSSLP   87 (454)
T ss_dssp             -------------------------CCHHHHHHHHHHHHHTSCTTSC-CCHHHHHHHHHHHHHHTCSEEECTTSCCSCCC
T ss_pred             cccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccc-cchhcchhhhhhhhccCCCEEEecCCccccCC
Confidence            45777777777777 67787888888888888888888777776553 4443             588888888887753


Q ss_pred             cCCcCCCCCcCEEEccCCcCCCcCChhHHHhcccCcEEECcCCcCCCCCCcccCCCCCCCEEECCCccccCccchhhhhC
Q 004704          160 QLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTG  239 (735)
Q Consensus       160 ~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~  239 (735)
                      .    ..++|++|++++|.+++ +|..    .++|++|++++|.+++ +|..   .++|++|++++|++++ +| . +..
T Consensus        88 ~----~~~~L~~L~l~~n~l~~-lp~~----~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp-~-~~~  151 (454)
T 1jl5_A           88 E----LPPHLESLVASCNSLTE-LPEL----PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LP-E-LQN  151 (454)
T ss_dssp             S----CCTTCSEEECCSSCCSS-CCCC----CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CC-C-CTT
T ss_pred             C----CcCCCCEEEccCCcCCc-cccc----cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-Cc-c-cCC
Confidence            2    23678888888888874 6643    3678888888888774 3321   1678888888888874 66 2 567


Q ss_pred             CCCCCEEEccCCCCCCcCcccccCCCCCCEEEccccccCccccccccCCCCCCEEEeeCCccCCCCCchhhhhcccCcEE
Q 004704          240 CFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEIL  319 (735)
Q Consensus       240 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L  319 (735)
                      +++|++|++++|.+++ +|..   .++|++|++++|.+++ +| .+..+++|++|++++|.+++ +|...    .+|++|
T Consensus       152 l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~~----~~L~~L  220 (454)
T 1jl5_A          152 SSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDLP----LSLESI  220 (454)
T ss_dssp             CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCCC----TTCCEE
T ss_pred             CCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCCc----CcccEE
Confidence            8888888888888775 4433   3578888888888875 45 47778888888888888873 45432    248888


Q ss_pred             EcCCCcCCCCCCccCCCCCCCCEEEcccCCCCccCCCccCCCCccEEEccCCcccccCcccccCCCCCcEEeCCCCcccc
Q 004704          320 SMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSG  399 (735)
Q Consensus       320 ~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~  399 (735)
                      ++++|.++ .+| .+..+++|++|++++|++++...   .+++|+.|++++|.+++ +|..   .++|+.|++++|++++
T Consensus       221 ~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~l~~---~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~  291 (454)
T 1jl5_A          221 VAGNNILE-ELP-ELQNLPFLTTIYADNNLLKTLPD---LPPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSG  291 (454)
T ss_dssp             ECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSSCCS---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSE
T ss_pred             ECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCcccc---cccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCc
Confidence            88888877 455 37778888888888887775332   24677777777777775 3332   3667777777777764


Q ss_pred             cCChhhhCCCCccEEEccCCcCCCCCchhhhcC-CCCCEEECcCCcCCCCCCchhhcccccccccCCccCCCCCCCcccc
Q 004704          400 RIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQL-QKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELD  478 (735)
Q Consensus       400 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~  478 (735)
                      . |..   .++|++|++++|.+++ ++    .+ ++|+.|++++|++++ +|..                          
T Consensus       292 l-~~~---~~~L~~L~l~~N~l~~-i~----~~~~~L~~L~Ls~N~l~~-lp~~--------------------------  335 (454)
T 1jl5_A          292 L-SEL---PPNLYYLNASSNEIRS-LC----DLPPSLEELNVSNNKLIE-LPAL--------------------------  335 (454)
T ss_dssp             E-SCC---CTTCCEEECCSSCCSE-EC----CCCTTCCEEECCSSCCSC-CCCC--------------------------
T ss_pred             c-cCc---CCcCCEEECcCCcCCc-cc----CCcCcCCEEECCCCcccc-cccc--------------------------
Confidence            2 211   1567777777777764 22    22 467777777777764 3321                          


Q ss_pred             hhhhcccCCCCCCCccccchhhhhhhhhhhhccccceeEEEEeccccccccCCcccccceEECCCCcccCCCCccccccc
Q 004704          479 EEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQ  558 (735)
Q Consensus       479 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~  558 (735)
                                                                            +++|+.|++++|+++ .+|.   .++
T Consensus       336 ------------------------------------------------------~~~L~~L~L~~N~l~-~lp~---~l~  357 (454)
T 1jl5_A          336 ------------------------------------------------------PPRLERLIASFNHLA-EVPE---LPQ  357 (454)
T ss_dssp             ------------------------------------------------------CTTCCEEECCSSCCS-CCCC---CCT
T ss_pred             ------------------------------------------------------CCcCCEEECCCCccc-cccc---hhh
Confidence                                                                  135666777777777 4555   356


Q ss_pred             cCCeEeCCCCcCcc--cCcccccCcCCCCEEeCCCCcccccCCccccCCCCCCeEEcccCcCcc--cCCCCCCCCccCCc
Q 004704          559 AILALNLSNNSLSG--SIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSG--RTPDKGQFATFDES  634 (735)
Q Consensus       559 ~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~--~~p~~~~~~~~~~~  634 (735)
                      +|++|++++|++++  .+|.+++.        |+.|.+.+.+|..   +++|++|++++|++++  .+|.     ++...
T Consensus       358 ~L~~L~L~~N~l~~l~~ip~~l~~--------L~~n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~iP~-----sl~~L  421 (454)
T 1jl5_A          358 NLKQLHVEYNPLREFPDIPESVED--------LRMNSHLAEVPEL---PQNLKQLHVETNPLREFPDIPE-----SVEDL  421 (454)
T ss_dssp             TCCEEECCSSCCSSCCCCCTTCCE--------EECCC-------------------------------------------
T ss_pred             hccEEECCCCCCCcCCCChHHHHh--------hhhcccccccccc---cCcCCEEECCCCcCCccccchh-----hHhhe
Confidence            77777777777776  55555443        2346666666653   4789999999999998  6664     33334


Q ss_pred             ccCCCCCCC
Q 004704          635 SYRGNPSLC  643 (735)
Q Consensus       635 ~~~gN~~lc  643 (735)
                      .+.+|...|
T Consensus       422 ~~~~~~~~~  430 (454)
T 1jl5_A          422 RMNSERVVD  430 (454)
T ss_dssp             ---------
T ss_pred             eCcCcccCC
Confidence            455554444

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=9.9e-38  Score=338.94  Aligned_cols=368  Identities=20%  Similarity=0.191  Sum_probs=276.9

Q ss_pred             CCCCccccccCCCCCCCEEeCCCCcCCCCcchhhhCCCCCCEEeCCCCcccccCChhhhhcCCCCCeeeccccccccccc
Q 004704            7 FIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVK   86 (735)
Q Consensus         7 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~   86 (735)
                      ...+..+..++++++|++|+|++|.+++. | +++.+++|++|++++|++++ +|   ++++++|++|++++|.+...  
T Consensus        29 ~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~-~~---~~~l~~L~~L~Ls~N~l~~~--  100 (457)
T 3bz5_A           29 EMQATDTISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITT-LD---LSQNTNLTYLACDSNKLTNL--  100 (457)
T ss_dssp             TCCTTSEEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSC-CC---CTTCTTCSEEECCSSCCSCC--
T ss_pred             CcCcccccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCe-Ec---cccCCCCCEEECcCCCCcee--
Confidence            34455667888999999999999999964 5 68999999999999999986 34   78888999999988876553  


Q ss_pred             CCCCCCCCCeeEEEeeCCCCCCCCchhhhCCCCCCEEEccCCcCcccCchHHHhCCCCCcEEECcCCcCcccCcCCcCCC
Q 004704           87 TENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKH  166 (735)
Q Consensus        87 ~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~  166 (735)
                        .+..+++|++|++++|++++. +  +..+++|++|++++|++++ ++   ++.+++|++|++++|...+..  .+..+
T Consensus       101 --~~~~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~-l~---l~~l~~L~~L~l~~n~~~~~~--~~~~l  169 (457)
T 3bz5_A          101 --DVTPLTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTE-ID---VSHNTQLTELDCHLNKKITKL--DVTPQ  169 (457)
T ss_dssp             --CCTTCTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSC-CC---CTTCTTCCEEECTTCSCCCCC--CCTTC
T ss_pred             --ecCCCCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCccce-ec---cccCCcCCEEECCCCCccccc--ccccC
Confidence              267788888888888888863 3  7788888888888888874 44   347788888888888544443  46677


Q ss_pred             CCcCEEEccCCcCCCcCChhHHHhcccCcEEECcCCcCCCCCCcccCCCCCCCEEECCCccccCccchhhhhCCCCCCEE
Q 004704          167 DFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELL  246 (735)
Q Consensus       167 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L  246 (735)
                      ++|++|++++|++++ +|  +. .+++|++|++++|.+++.   .++.+++|++|++++|++++ +|   +..+++|++|
T Consensus       170 ~~L~~L~ls~n~l~~-l~--l~-~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip---~~~l~~L~~L  238 (457)
T 3bz5_A          170 TQLTTLDCSFNKITE-LD--VS-QNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID---VTPLTQLTYF  238 (457)
T ss_dssp             TTCCEEECCSSCCCC-CC--CT-TCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC---CTTCTTCSEE
T ss_pred             CcCCEEECCCCccce-ec--cc-cCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC---ccccCCCCEE
Confidence            888888888888874 55  33 367888888888888753   37777888888888888874 55   4567788888


Q ss_pred             EccCCCCCCcCcccccCCCCCCEEEccccccCccccccccCCCCCCEEEeeCCccCCCCCchhhhhcccCcEEEcCCCcC
Q 004704          247 DLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHL  326 (735)
Q Consensus       247 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l  326 (735)
                      ++++|.+++..   +..+++|+.|++++|              +|+.|++++|.+.+.+|  ++.++. |+.|++++|..
T Consensus       239 ~l~~N~l~~~~---~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~-L~~L~Ls~n~~  298 (457)
T 3bz5_A          239 DCSVNPLTELD---VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRK-IKELDVTHNTQ  298 (457)
T ss_dssp             ECCSSCCSCCC---CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTT-CCCCCCTTCTT
T ss_pred             EeeCCcCCCcC---HHHCCCCCEEeccCC--------------CCCEEECCCCccCCccc--cccccc-CCEEECCCCcc
Confidence            88888877643   345677777776654              35566777777766666  344555 88888888877


Q ss_pred             CCCCCccCCCCCCCCEEEcccCCCCccCCCccCCCCccEEEccCCcccccCcccccCCCCCcEEeCCCCcccccCChhhh
Q 004704          327 EGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQIN  406 (735)
Q Consensus       327 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~  406 (735)
                      .+.+|.   ...+|+.|++++|            ++|+.|++++|++++. +  +..+++|+.|++++|++++       
T Consensus       299 l~~l~~---~~~~L~~L~l~~~------------~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~-------  353 (457)
T 3bz5_A          299 LYLLDC---QAAGITELDLSQN------------PKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD-------  353 (457)
T ss_dssp             CCEEEC---TTCCCSCCCCTTC------------TTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB-------
T ss_pred             cceecc---CCCcceEechhhc------------ccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC-------
Confidence            766664   3345555555544            6789999999999875 3  7889999999999999885       


Q ss_pred             CCCCccEEEccCCcCCCCCchhhhcCCCCCEEECcCCcCCCCCCchhhc
Q 004704          407 EHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFAN  455 (735)
Q Consensus       407 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~  455 (735)
                       ++.|..|++++|.+.|.     .++..|+.+++++|+++|.+|..+..
T Consensus       354 -l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~~~  396 (457)
T 3bz5_A          354 -FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPDLLD  396 (457)
T ss_dssp             -CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTTCBC
T ss_pred             -ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChhHhc
Confidence             24677778889988875     35567888999999999999986544

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=1.7e-37  Score=341.76  Aligned_cols=346  Identities=18%  Similarity=0.175  Sum_probs=238.8

Q ss_pred             EEECCCccccCccchhhhhCCCCCCEEEccCCCCCCcCcccccCCCCCCEEEccccccCccccccccCCCCCCEEEeeCC
Q 004704          220 LLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNN  299 (735)
Q Consensus       220 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n  299 (735)
                      .++.+++.++ .+|..+   .+++++|++++|.+++..+..|.++++|++|++++|.+++..|..|..+++|++|++++|
T Consensus        15 ~v~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n   90 (477)
T 2id5_A           15 AVLCHRKRFV-AVPEGI---PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN   90 (477)
T ss_dssp             EEECCSCCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             EEEeCCCCcC-cCCCCC---CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence            4444444444 344322   235556666666665555555666666666666666666555666666666666666666


Q ss_pred             ccCCCCCchhhhhcccCcEEEcCCCcCCCCCCccCCCCCCCCEEEcccCCCCccCCCcc-CCCCccEEEccCCcccccCc
Q 004704          300 MLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSL-NLSSVEHLSLQKNALNGLIP  378 (735)
Q Consensus       300 ~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~-~l~~L~~L~l~~n~l~~~~~  378 (735)
                      .+++..+..+..++. |++|++++|++.+..+..|..+++|++|++++|.+.+..+..+ ++++|+.|++++|.+++..+
T Consensus        91 ~l~~~~~~~~~~l~~-L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  169 (477)
T 2id5_A           91 RLKLIPLGVFTGLSN-LTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPT  169 (477)
T ss_dssp             CCCSCCTTSSTTCTT-CCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCH
T ss_pred             cCCccCcccccCCCC-CCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccCh
Confidence            666333333445544 6666666666666666666677777777777777666655555 66777777777777776666


Q ss_pred             ccccCCCCCcEEeCCCCcccccCChhhhCCCCccEEEccCCcCCCCCchhhhcCCCCCEEECcCCcCCCCCCchhhcccc
Q 004704          379 GELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLS  458 (735)
Q Consensus       379 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  458 (735)
                      ..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|...+.+|.......+|+.|++++|++++..+..+..   
T Consensus       170 ~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~---  246 (477)
T 2id5_A          170 EALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRH---  246 (477)
T ss_dssp             HHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTT---
T ss_pred             hHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcC---
Confidence            66777778888888888887766677777888888888887777677666666668888888888877433233332   


Q ss_pred             cccccCCccCCCCCCCcccchhhhcccCCCCCCCccccchhhhhhhhhhhhccccceeEEEEeccccccccCCcccccce
Q 004704          459 WRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTG  538 (735)
Q Consensus       459 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~  538 (735)
                                                                                                +++|+.
T Consensus       247 --------------------------------------------------------------------------l~~L~~  252 (477)
T 2id5_A          247 --------------------------------------------------------------------------LVYLRF  252 (477)
T ss_dssp             --------------------------------------------------------------------------CTTCCE
T ss_pred             --------------------------------------------------------------------------ccccCe
Confidence                                                                                      356777


Q ss_pred             EECCCCcccCCCCccccccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccCCccccCCCCCCeEEcccCcC
Q 004704          539 LDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNL  618 (735)
Q Consensus       539 LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l  618 (735)
                      |+|++|.+++..+..|..+++|+.|+|++|++++..|..|.++++|+.|||++|++++..+..|..+++|+.|++++|++
T Consensus       253 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l  332 (477)
T 2id5_A          253 LNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL  332 (477)
T ss_dssp             EECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCE
T ss_pred             eECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCc
Confidence            88888888877777788888888899999988888888888888999999999988877777788888899999999988


Q ss_pred             cccCCCCCCCCccCCcccCCCCCCCCccc
Q 004704          619 SGRTPDKGQFATFDESSYRGNPSLCAWLI  647 (735)
Q Consensus       619 ~~~~p~~~~~~~~~~~~~~gN~~lc~~~~  647 (735)
                      ++.++....+.......+.++...|..|.
T Consensus       333 ~c~c~~~~~~~~~~~~~~~~~~~~C~~p~  361 (477)
T 2id5_A          333 ACDCRLLWVFRRRWRLNFNRQQPTCATPE  361 (477)
T ss_dssp             ECSGGGHHHHTTTTSSCCTTCCCBEEESG
T ss_pred             cCccchHhHHhhhhccccCccCceeCCch
Confidence            87765433233333456777888886543

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=5.4e-37  Score=333.13  Aligned_cols=361  Identities=18%  Similarity=0.181  Sum_probs=209.3

Q ss_pred             CCCchhhhCCCCCCEEEccCCcCcccCchHHHhCCCCCcEEECcCCcCcccCcCCcCCCCCcCEEEccCCcCCCcCChhH
Q 004704          108 GSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNM  187 (735)
Q Consensus       108 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~  187 (735)
                      +..+..++++++|++|++++|.++ .+| . +..+++|++|++++|.++++   .+..+++|++|++++|.+++ ++  +
T Consensus        32 ~~~~~~~~~l~~L~~L~Ls~n~l~-~~~-~-l~~l~~L~~L~Ls~n~l~~~---~~~~l~~L~~L~Ls~N~l~~-~~--~  102 (457)
T 3bz5_A           32 ATDTISEEQLATLTSLDCHNSSIT-DMT-G-IEKLTGLTKLICTSNNITTL---DLSQNTNLTYLACDSNKLTN-LD--V  102 (457)
T ss_dssp             TTSEEEHHHHTTCCEEECCSSCCC-CCT-T-GGGCTTCSEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--C
T ss_pred             cccccChhHcCCCCEEEccCCCcc-cCh-h-hcccCCCCEEEccCCcCCeE---ccccCCCCCEEECcCCCCce-ee--c
Confidence            344455666777777777777776 345 2 34667777777777777664   25666667777777766663 33  2


Q ss_pred             HHhcccCcEEECcCCcCCCCCCcccCCCCCCCEEECCCccccCccchhhhhCCCCCCEEEccCCCCCCcCcccccCCCCC
Q 004704          188 GVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRL  267 (735)
Q Consensus       188 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  267 (735)
                      . .+++|++|++++|.+++ +|  ++.+++|++|++++|++++ ++   +..+++|++|++++|...+.+  .+..+++|
T Consensus       103 ~-~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~-l~---l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L  172 (457)
T 3bz5_A          103 T-PLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTE-ID---VSHNTQLTELDCHLNKKITKL--DVTPQTQL  172 (457)
T ss_dssp             T-TCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSC-CC---CTTCTTCCEEECTTCSCCCCC--CCTTCTTC
T ss_pred             C-CCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCccce-ec---cccCCcCCEEECCCCCccccc--ccccCCcC
Confidence            2 35666666666666664 33  5666666666666666653 32   345566666666666433333  34555666


Q ss_pred             CEEEccccccCccccccccCCCCCCEEEeeCCccCCCCCchhhhhcccCcEEEcCCCcCCCCCCccCCCCCCCCEEEccc
Q 004704          268 RHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISE  347 (735)
Q Consensus       268 ~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~  347 (735)
                      ++|++++|++++ +|  +..+++|+.|++++|.+++.   .++.++. |+.|++++|++++ +|  +..+++|++|++++
T Consensus       173 ~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~-L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~  242 (457)
T 3bz5_A          173 TTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQ-LTFLDCSSNKLTE-ID--VTPLTQLTYFDCSV  242 (457)
T ss_dssp             CEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTT-CSEEECCSSCCSC-CC--CTTCTTCSEEECCS
T ss_pred             CEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCC-CCEEECcCCcccc-cC--ccccCCCCEEEeeC
Confidence            666666666553 22  45555555666555555532   1344443 5555555555554 23  44555555555555


Q ss_pred             CCCCccCCCccCCCCccEEEccCCcccccCcccccCCCCCcEEeCCCCcccccCChhhhCCCCccEEEccCCcCCCCCch
Q 004704          348 NRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPD  427 (735)
Q Consensus       348 n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  427 (735)
                      |++++.+.  ..+++|+.|++++|              +|+.|++++|.+.+.+|  ++.+++|+.|++++|...+.+|.
T Consensus       243 N~l~~~~~--~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~  304 (457)
T 3bz5_A          243 NPLTELDV--STLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC  304 (457)
T ss_dssp             SCCSCCCC--TTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC
T ss_pred             CcCCCcCH--HHCCCCCEEeccCC--------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceecc
Confidence            55554321  13344444444332              23334444444433333  23334444444444443333332


Q ss_pred             hhhcCCCCCEEECcCCcCCCCCCchhhcccccccccCCccCCCCCCCcccchhhhcccCCCCCCCccccchhhhhhhhhh
Q 004704          428 QLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEK  507 (735)
Q Consensus       428 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  507 (735)
                         ..++|+.|++++                                                                 
T Consensus       305 ---~~~~L~~L~l~~-----------------------------------------------------------------  316 (457)
T 3bz5_A          305 ---QAAGITELDLSQ-----------------------------------------------------------------  316 (457)
T ss_dssp             ---TTCCCSCCCCTT-----------------------------------------------------------------
T ss_pred             ---CCCcceEechhh-----------------------------------------------------------------
Confidence               112222222222                                                                 


Q ss_pred             hhccccceeEEEEeccccccccCCcccccceEECCCCcccCCCCccccccccCCeEeCCCCcCcccCcccccCcCCCCEE
Q 004704          508 RAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESL  587 (735)
Q Consensus       508 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  587 (735)
                                               .++|+.|++++|++++ ++  ++.+++|+.|++++|++++        ++.|+.|
T Consensus       317 -------------------------~~~L~~L~L~~N~l~~-l~--l~~l~~L~~L~l~~N~l~~--------l~~L~~L  360 (457)
T 3bz5_A          317 -------------------------NPKLVYLYLNNTELTE-LD--VSHNTKLKSLSCVNAHIQD--------FSSVGKI  360 (457)
T ss_dssp             -------------------------CTTCCEEECTTCCCSC-CC--CTTCTTCSEEECCSSCCCB--------CTTGGGS
T ss_pred             -------------------------cccCCEEECCCCcccc-cc--cccCCcCcEEECCCCCCCC--------ccccccc
Confidence                                     2467789999999987 33  8889999999999999986        2456777


Q ss_pred             eCCCCcccccCCccccCCCCCCeEEcccCcCcccCCC
Q 004704          588 DISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPD  624 (735)
Q Consensus       588 dLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~  624 (735)
                      ++++|+++|.     ..+..|..+++++|+++|.+|.
T Consensus       361 ~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~  392 (457)
T 3bz5_A          361 PALNNNFEAE-----GQTITMPKETLTNNSLTIAVSP  392 (457)
T ss_dssp             SGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCT
T ss_pred             cccCCcEEec-----ceeeecCccccccCcEEEEcCh
Confidence            8999999876     3455678889999999999986

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=1.1e-35  Score=325.79  Aligned_cols=324  Identities=26%  Similarity=0.339  Sum_probs=205.0

Q ss_pred             cccCcEEECcCCcCCCCCCcccCCCCCCCEEECCCccccCccchhhhhCCCCCCEEEccCCCCCCcCcccccCCCCCCEE
Q 004704          191 LQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHL  270 (735)
Q Consensus       191 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  270 (735)
                      +++|++|++++|.+++. +. +..+++|++|++++|.+.+ ++.  +..+++|++|++++|.+++..+  +..+++|++|
T Consensus        67 l~~L~~L~Ls~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~-~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L  139 (466)
T 1o6v_A           67 LNNLTQINFSNNQLTDI-TP-LKNLTKLVDILMNNNQIAD-ITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRL  139 (466)
T ss_dssp             CTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-CGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEE
T ss_pred             hcCCCEEECCCCccCCc-hh-hhccccCCEEECCCCcccc-Chh--hcCCCCCCEEECCCCCCCCChH--HcCCCCCCEE
Confidence            34444444444444422 22 4445555555555555442 222  3445555555555555543321  4555555555


Q ss_pred             EccccccCccccccccCCCCCCEEEeeCCccCCCCCchhhhhcccCcEEEcCCCcCCCCCCccCCCCCCCCEEEcccCCC
Q 004704          271 YFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRL  350 (735)
Q Consensus       271 ~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l  350 (735)
                      ++++|.+.+ ++ .+..+++|++|+++ |.+.+. + .+..++. |+.|++++|.+.+.  ..+..+++|++|++++|.+
T Consensus       140 ~l~~n~l~~-~~-~~~~l~~L~~L~l~-~~~~~~-~-~~~~l~~-L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l  211 (466)
T 1o6v_A          140 ELSSNTISD-IS-ALSGLTSLQQLSFG-NQVTDL-K-PLANLTT-LERLDISSNKVSDI--SVLAKLTNLESLIATNNQI  211 (466)
T ss_dssp             EEEEEEECC-CG-GGTTCTTCSEEEEE-ESCCCC-G-GGTTCTT-CCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCC
T ss_pred             ECCCCccCC-Ch-hhccCCcccEeecC-CcccCc-h-hhccCCC-CCEEECcCCcCCCC--hhhccCCCCCEEEecCCcc
Confidence            555555542 22 24555555555554 233321 2 1444444 66666666655532  2355566666666666666


Q ss_pred             CccCCCccCCCCccEEEccCCcccccCcccccCCCCCcEEeCCCCcccccCChhhhCCCCccEEEccCCcCCCCCchhhh
Q 004704          351 SGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLC  430 (735)
Q Consensus       351 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  430 (735)
                      .+..+ ...+++|+.|++++|.+.+.  +.+..+++|+.|++++|.+++..+  +..+++|++|++++|.+.+..+  +.
T Consensus       212 ~~~~~-~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~  284 (466)
T 1o6v_A          212 SDITP-LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LA  284 (466)
T ss_dssp             CCCGG-GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GT
T ss_pred             ccccc-ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--cc
Confidence            65443 23566677777777776643  356777888888888888875443  7778888888888888875433  77


Q ss_pred             cCCCCCEEECcCCcCCCCCCchhhcccccccccCCccCCCCCCCcccchhhhcccCCCCCCCccccchhhhhhhhhhhhc
Q 004704          431 QLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAA  510 (735)
Q Consensus       431 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  510 (735)
                      .+++|+.|++++|++++..|  +.                                                        
T Consensus       285 ~l~~L~~L~L~~n~l~~~~~--~~--------------------------------------------------------  306 (466)
T 1o6v_A          285 GLTALTNLELNENQLEDISP--IS--------------------------------------------------------  306 (466)
T ss_dssp             TCTTCSEEECCSSCCSCCGG--GG--------------------------------------------------------
T ss_pred             CCCccCeEEcCCCcccCchh--hc--------------------------------------------------------
Confidence            88888888888888774332  21                                                        


Q ss_pred             cccceeEEEEeccccccccCCcccccceEECCCCcccCCCCccccccccCCeEeCCCCcCcccCcccccCcCCCCEEeCC
Q 004704          511 IDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDIS  590 (735)
Q Consensus       511 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs  590 (735)
                                           .+++|+.|++++|++++..|  ++.+++|+.|++++|.+++.  ..++++++|+.|+++
T Consensus       307 ---------------------~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~  361 (466)
T 1o6v_A          307 ---------------------NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAG  361 (466)
T ss_dssp             ---------------------GCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECC
T ss_pred             ---------------------CCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCC
Confidence                                 23567788888888886555  77888888899988888864  368888899999999


Q ss_pred             CCcccccCCccccCCCCCCeEEcccCcCccc
Q 004704          591 YNKLTGQIPPQLTALNFLSIFNVSYNNLSGR  621 (735)
Q Consensus       591 ~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~  621 (735)
                      +|++++..|  +..+++|+.|++++|++++.
T Consensus       362 ~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~  390 (466)
T 1o6v_A          362 HNQISDLTP--LANLTRITQLGLNDQAWTNA  390 (466)
T ss_dssp             SSCCCBCGG--GTTCTTCCEEECCCEEEECC
T ss_pred             CCccCccch--hhcCCCCCEEeccCCcccCC
Confidence            999887776  78888899999999988874

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=2.6e-35  Score=322.75  Aligned_cols=349  Identities=24%  Similarity=0.313  Sum_probs=214.4

Q ss_pred             CCCCCEEEccCCcCcccCchHHHhCCCCCcEEECcCCcCcccCcCCcCCCCCcCEEEccCCcCCCcCChhHHHhcccCcE
Q 004704          117 QYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMY  196 (735)
Q Consensus       117 l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~  196 (735)
                      +++++.|+++++.+. .+|.  +..+++|++|++++|.+++..+  +..+++|++|++++|.+++ ++. + ..+++|++
T Consensus        45 l~~l~~L~l~~~~i~-~l~~--~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~~-~-~~l~~L~~  116 (466)
T 1o6v_A           45 LDQVTTLQADRLGIK-SIDG--VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIAD-ITP-L-ANLTNLTG  116 (466)
T ss_dssp             HHTCCEEECCSSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CGG-G-TTCTTCCE
T ss_pred             hccccEEecCCCCCc-cCcc--hhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCcccc-Chh-h-cCCCCCCE
Confidence            445666666666665 4553  2356666666666666655533  5555556666666655552 222 2 22455555


Q ss_pred             EECcCCcCCCCCCcccCCCCCCCEEECCCccccCccchhhhhCCCCCCEEEccCCCCCCcCcccccCCCCCCEEEccccc
Q 004704          197 MDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNN  276 (735)
Q Consensus       197 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~  276 (735)
                      |++++|.+++. +. +..+++|++|++++|.+.+ ++.  +..+++|++|+++ |.+.+                     
T Consensus       117 L~L~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~-~~~--~~~l~~L~~L~l~-~~~~~---------------------  169 (466)
T 1o6v_A          117 LTLFNNQITDI-DP-LKNLTNLNRLELSSNTISD-ISA--LSGLTSLQQLSFG-NQVTD---------------------  169 (466)
T ss_dssp             EECCSSCCCCC-GG-GTTCTTCSEEEEEEEEECC-CGG--GTTCTTCSEEEEE-ESCCC---------------------
T ss_pred             EECCCCCCCCC-hH-HcCCCCCCEEECCCCccCC-Chh--hccCCcccEeecC-CcccC---------------------
Confidence            55555555432 21 4555555555555555542 221  2344455555543 22222                     


Q ss_pred             cCccccccccCCCCCCEEEeeCCccCCCCCchhhhhcccCcEEEcCCCcCCCCCCccCCCCCCCCEEEcccCCCCccCCC
Q 004704          277 FSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIAS  356 (735)
Q Consensus       277 l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~  356 (735)
                         ..  .+..+++|++|++++|.+++ ++ .+..++. |+.|++++|.+.+..|  +..+++|++|++++|++.+. +.
T Consensus       170 ---~~--~~~~l~~L~~L~l~~n~l~~-~~-~l~~l~~-L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~~  238 (466)
T 1o6v_A          170 ---LK--PLANLTTLERLDISSNKVSD-IS-VLAKLTN-LESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI-GT  238 (466)
T ss_dssp             ---CG--GGTTCTTCCEEECCSSCCCC-CG-GGGGCTT-CSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-GG
T ss_pred             ---ch--hhccCCCCCEEECcCCcCCC-Ch-hhccCCC-CCEEEecCCccccccc--ccccCCCCEEECCCCCcccc-hh
Confidence               11  14445555555555555442 22 2444443 5555555555554333  44455566666666655542 22


Q ss_pred             ccCCCCccEEEccCCcccccCcccccCCCCCcEEeCCCCcccccCChhhhCCCCccEEEccCCcCCCCCchhhhcCCCCC
Q 004704          357 SLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLA  436 (735)
Q Consensus       357 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  436 (735)
                      ...+++|+.|++++|.+.+..+  +..+++|+.|++++|.+++..+  +..+++|++|++++|++.+..+  +..+++|+
T Consensus       239 l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~  312 (466)
T 1o6v_A          239 LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLT  312 (466)
T ss_dssp             GGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCS
T ss_pred             hhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCC
Confidence            2356677777777777765543  6777888888888888875433  7778888888888888886443  77888888


Q ss_pred             EEECcCCcCCCCCCchhhcccccccccCCccCCCCCCCcccchhhhcccCCCCCCCccccchhhhhhhhhhhhcccccee
Q 004704          437 MMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVE  516 (735)
Q Consensus       437 ~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  516 (735)
                      .|++++|++++..|  +.                                                              
T Consensus       313 ~L~L~~n~l~~~~~--~~--------------------------------------------------------------  328 (466)
T 1o6v_A          313 YLTLYFNNISDISP--VS--------------------------------------------------------------  328 (466)
T ss_dssp             EEECCSSCCSCCGG--GG--------------------------------------------------------------
T ss_pred             EEECcCCcCCCchh--hc--------------------------------------------------------------
Confidence            89998888875443  21                                                              


Q ss_pred             EEEEeccccccccCCcccccceEECCCCcccCCCCccccccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccc
Q 004704          517 IEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTG  596 (735)
Q Consensus       517 ~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~  596 (735)
                                     .+++|+.|++++|++++.  ..++.+++|+.|++++|++++..|  +..+++|+.|++++|++++
T Consensus       329 ---------------~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          329 ---------------SLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             ---------------GCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred             ---------------cCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence                           136778899999988854  468889999999999999998777  8899999999999999996


Q ss_pred             cCCcc
Q 004704          597 QIPPQ  601 (735)
Q Consensus       597 ~~p~~  601 (735)
                       +|..
T Consensus       390 -~p~~  393 (466)
T 1o6v_A          390 -APVN  393 (466)
T ss_dssp             -CCBC
T ss_pred             -Cchh
Confidence             4443

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=2.1e-35  Score=325.13  Aligned_cols=347  Identities=19%  Similarity=0.168  Sum_probs=220.3

Q ss_pred             CEEEccCCcCCCcCChhHHHhcccCcEEECcCCcCCCCCCcccCCCCCCCEEECCCccccCccchhhhhCCCCCCEEEcc
Q 004704          170 HHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLS  249 (735)
Q Consensus       170 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~  249 (735)
                      +.++.+++.++ .+|..+.   ++++.|++++|.+++..+..+.++++|++|++++|.++                    
T Consensus        14 ~~v~c~~~~l~-~ip~~~~---~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~--------------------   69 (477)
T 2id5_A           14 RAVLCHRKRFV-AVPEGIP---TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS--------------------   69 (477)
T ss_dssp             TEEECCSCCCS-SCCSCCC---TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCC--------------------
T ss_pred             CEEEeCCCCcC-cCCCCCC---CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccC--------------------
Confidence            35555555555 5555432   35555666655555444455555555555555555554                    


Q ss_pred             CCCCCCcCcccccCCCCCCEEEccccccCccccccccCCCCCCEEEeeCCccCCCCCchhhhhcccCcEEEcCCCcCCCC
Q 004704          250 NNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGN  329 (735)
Q Consensus       250 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~  329 (735)
                           +..|..|.++++|++|++++|.+++..+..|..+++|++|++++|.+++..|..+..++. |++|++++|.+.+.
T Consensus        70 -----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~-L~~L~l~~n~l~~~  143 (477)
T 2id5_A           70 -----AVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYN-LKSLEVGDNDLVYI  143 (477)
T ss_dssp             -----EECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTT-CCEEEECCTTCCEE
T ss_pred             -----EeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHcccccc-CCEEECCCCcccee
Confidence                 333444444444444444444444333333444445555555555544444444444444 55555555555555


Q ss_pred             CCccCCCCCCCCEEEcccCCCCccCCCcc-CCCCccEEEccCCcccccCcccccCCCCCcEEeCCCCcccccCChhhhCC
Q 004704          330 VPVQLNNLERLRILDISENRLSGPIASSL-NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEH  408 (735)
Q Consensus       330 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l  408 (735)
                      .+..|.++++|++|++++|++++..+..+ .+++|+.|++++|.+.+..+..+..+++|+.|++++|...+.+|......
T Consensus       144 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~  223 (477)
T 2id5_A          144 SHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYG  223 (477)
T ss_dssp             CTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTT
T ss_pred             ChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccC
Confidence            55555566666666666666655444333 56666666666666666666667777778888888877766666666666


Q ss_pred             CCccEEEccCCcCCCCCchhhhcCCCCCEEECcCCcCCCCCCchhhcccccccccCCccCCCCCCCcccchhhhcccCCC
Q 004704          409 SNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGN  488 (735)
Q Consensus       409 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  488 (735)
                      .+|++|++++|.+++..+..+..+++|+.|++++|++++..+..+..                                 
T Consensus       224 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~---------------------------------  270 (477)
T 2id5_A          224 LNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHE---------------------------------  270 (477)
T ss_dssp             CCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTT---------------------------------
T ss_pred             ccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccc---------------------------------
Confidence            68888888888888655567888888888888888887555544433                                 


Q ss_pred             CCCCccccchhhhhhhhhhhhccccceeEEEEeccccccccCCcccccceEECCCCcccCCCCccccccccCCeEeCCCC
Q 004704          489 NRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNN  568 (735)
Q Consensus       489 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N  568 (735)
                                                                  +++|+.|+|++|++++..|..|..+++|+.|+|++|
T Consensus       271 --------------------------------------------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N  306 (477)
T 2id5_A          271 --------------------------------------------LLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGN  306 (477)
T ss_dssp             --------------------------------------------CTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSS
T ss_pred             --------------------------------------------cccCCEEECCCCccceECHHHhcCcccCCEEECCCC
Confidence                                                        356788999999998888888999999999999999


Q ss_pred             cCcccCcccccCcCCCCEEeCCCCcccccCCccccCCCCCCeEEcccCcCcccCCC
Q 004704          569 SLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPD  624 (735)
Q Consensus       569 ~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~  624 (735)
                      ++++..+..|..+++|+.|+|++|.+....+.. .-......+++..+...+..|.
T Consensus       307 ~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~-~~~~~~~~~~~~~~~~~C~~p~  361 (477)
T 2id5_A          307 QLTTLEESVFHSVGNLETLILDSNPLACDCRLL-WVFRRRWRLNFNRQQPTCATPE  361 (477)
T ss_dssp             CCSCCCGGGBSCGGGCCEEECCSSCEECSGGGH-HHHTTTTSSCCTTCCCBEEESG
T ss_pred             cCceeCHhHcCCCcccCEEEccCCCccCccchH-hHHhhhhccccCccCceeCCch
Confidence            999877788899999999999999988543221 1112233345566666665554

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=8.3e-35  Score=311.42  Aligned_cols=334  Identities=21%  Similarity=0.227  Sum_probs=271.4

Q ss_pred             CCCCCCEEECCCccccCccchhhhhCCCCCCEEEccCCCCCCcCcccccCCCCCCEEEccccccCccccccccCCCCCCE
Q 004704          214 EMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQV  293 (735)
Q Consensus       214 ~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~  293 (735)
                      .+++++.|++++|.++ .+|..++..+++|++|++++|.+++..+..|..+++|++|++++|.+++..|..+..+++|++
T Consensus        43 ~l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  121 (390)
T 3o6n_A           43 TLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV  121 (390)
T ss_dssp             GGCCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             ccCCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence            3577888888888876 678777788888999999999888777778888999999999999988777788888899999


Q ss_pred             EEeeCCccCCCCCch-hhhhcccCcEEEcCCCcCCCCCCccCCCCCCCCEEEcccCCCCccCCCccCCCCccEEEccCCc
Q 004704          294 LDISNNMLSGHIPHW-MGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNA  372 (735)
Q Consensus       294 L~l~~n~l~~~~p~~-~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~  372 (735)
                      |++++|.++ .+|.. +..++. |++|++++|++++..+..+..+++|++|++++|++++..  ...+++|+.|++++|.
T Consensus       122 L~L~~n~l~-~l~~~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~L~~L~l~~n~  197 (390)
T 3o6n_A          122 LVLERNDLS-SLPRGIFHNTPK-LTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNL  197 (390)
T ss_dssp             EECCSSCCC-CCCTTTTTTCTT-CCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC--GGGCTTCSEEECCSSC
T ss_pred             EECCCCccC-cCCHHHhcCCCC-CcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc--cccccccceeeccccc
Confidence            999999988 55554 466666 999999999998878888889999999999999887652  3367889999999998


Q ss_pred             ccccCcccccCCCCCcEEeCCCCcccccCChhhhCCCCccEEEccCCcCCCCCchhhhcCCCCCEEECcCCcCCCCCCch
Q 004704          373 LNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPC  452 (735)
Q Consensus       373 l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~  452 (735)
                      +++.     ...++|+.|++++|.+... |..  ..++|+.|++++|.+++.  ..+..+++|+.|++++|++++..|..
T Consensus       198 l~~~-----~~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~  267 (390)
T 3o6n_A          198 LSTL-----AIPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHP  267 (390)
T ss_dssp             CSEE-----ECCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGG
T ss_pred             cccc-----CCCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhH
Confidence            8753     3446899999999999844 432  247899999999999854  57889999999999999998776666


Q ss_pred             hhcccccccccCCccCCCCCCCcccchhhhcccCCCCCCCccccchhhhhhhhhhhhccccceeEEEEeccccccccCCc
Q 004704          453 FANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSN  532 (735)
Q Consensus       453 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  532 (735)
                      +..                                                                             
T Consensus       268 ~~~-----------------------------------------------------------------------------  270 (390)
T 3o6n_A          268 FVK-----------------------------------------------------------------------------  270 (390)
T ss_dssp             GTT-----------------------------------------------------------------------------
T ss_pred             ccc-----------------------------------------------------------------------------
Confidence            544                                                                             


Q ss_pred             ccccceEECCCCcccCCCCccccccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccCCccccCCCCCCeEE
Q 004704          533 VNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFN  612 (735)
Q Consensus       533 l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~  612 (735)
                      +++|+.|++++|+++ .+|..+..+++|++|+|++|+++ .+|..++.+++|++|+|++|++++. |  +..+++|+.|+
T Consensus       271 l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~  345 (390)
T 3o6n_A          271 MQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLT  345 (390)
T ss_dssp             CSSCCEEECCSSCCC-EEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEE
T ss_pred             cccCCEEECCCCcCc-ccCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEE
Confidence            357888999999998 46777788999999999999999 5777789999999999999999854 3  77889999999


Q ss_pred             cccCcCcccCCCCCCCCccCCcccCCCCCCCCc
Q 004704          613 VSYNNLSGRTPDKGQFATFDESSYRGNPSLCAW  645 (735)
Q Consensus       613 ls~N~l~~~~p~~~~~~~~~~~~~~gN~~lc~~  645 (735)
                      +++|++++.... ..+..+....+.+++..|.+
T Consensus       346 l~~N~~~~~~~~-~~~~~~~~~~~~~~~~~c~~  377 (390)
T 3o6n_A          346 LSHNDWDCNSLR-ALFRNVARPAVDDADQHCKI  377 (390)
T ss_dssp             CCSSCEEHHHHH-HHTTTCCTTTBCCCCSCCCT
T ss_pred             cCCCCccchhHH-HHHHHHHhhcccccCceecc
Confidence            999999875432 22344555567777777764

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=2.7e-34  Score=324.24  Aligned_cols=334  Identities=20%  Similarity=0.218  Sum_probs=276.5

Q ss_pred             CCCCCEEECCCccccCccchhhhhCCCCCCEEEccCCCCCCcCcccccCCCCCCEEEccccccCccccccccCCCCCCEE
Q 004704          215 MKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVL  294 (735)
Q Consensus       215 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L  294 (735)
                      +++++.+++++|.+. .+|..++..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..|..|..+++|++|
T Consensus        50 l~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  128 (597)
T 3oja_B           50 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  128 (597)
T ss_dssp             GCCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence            567888888888876 6787777888899999999998888777788889999999999999888777788889999999


Q ss_pred             EeeCCccCCCCCchhhhhcccCcEEEcCCCcCCCCCCccCCCCCCCCEEEcccCCCCccCCCccCCCCccEEEccCCccc
Q 004704          295 DISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALN  374 (735)
Q Consensus       295 ~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~  374 (735)
                      ++++|.+++..+..+..++. |++|++++|.+++..|..|..+++|++|++++|.+++..  ...+++|+.|++++|.+.
T Consensus       129 ~L~~n~l~~l~~~~~~~l~~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~L~~L~l~~n~l~  205 (597)
T 3oja_B          129 VLERNDLSSLPRGIFHNTPK-LTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLS  205 (597)
T ss_dssp             ECCSSCCCCCCTTTTTTCTT-CCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC--GGGCTTCSEEECCSSCCS
T ss_pred             EeeCCCCCCCCHHHhccCCC-CCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC--hhhhhhhhhhhcccCccc
Confidence            99999988443344566666 999999999998888888999999999999999888653  236788999999999887


Q ss_pred             ccCcccccCCCCCcEEeCCCCcccccCChhhhCCCCccEEEccCCcCCCCCchhhhcCCCCCEEECcCCcCCCCCCchhh
Q 004704          375 GLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFA  454 (735)
Q Consensus       375 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~  454 (735)
                      +.     ...++|+.|++++|.++.. +..+  .++|+.|++++|.+++  +..+..+++|+.|++++|.+++..|..+.
T Consensus       206 ~l-----~~~~~L~~L~ls~n~l~~~-~~~~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~  275 (597)
T 3oja_B          206 TL-----AIPIAVEELDASHNSINVV-RGPV--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFV  275 (597)
T ss_dssp             EE-----ECCTTCSEEECCSSCCCEE-ECSC--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGT
T ss_pred             cc-----cCCchhheeeccCCccccc-cccc--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhc
Confidence            53     4456899999999999844 3332  3689999999999986  36789999999999999999987777665


Q ss_pred             cccccccccCCccCCCCCCCcccchhhhcccCCCCCCCccccchhhhhhhhhhhhccccceeEEEEeccccccccCCccc
Q 004704          455 NVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVN  534 (735)
Q Consensus       455 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  534 (735)
                      .+                                                                             +
T Consensus       276 ~l-----------------------------------------------------------------------------~  278 (597)
T 3oja_B          276 KM-----------------------------------------------------------------------------Q  278 (597)
T ss_dssp             TC-----------------------------------------------------------------------------S
T ss_pred             Cc-----------------------------------------------------------------------------c
Confidence            43                                                                             5


Q ss_pred             ccceEECCCCcccCCCCccccccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccCCccccCCCCCCeEEcc
Q 004704          535 RVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVS  614 (735)
Q Consensus       535 ~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls  614 (735)
                      +|+.|+|++|.+++ +|..++.+++|+.|+|++|.++ .+|..++.+++|+.|+|++|++++. |  +..++.|+.|+++
T Consensus       279 ~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~  353 (597)
T 3oja_B          279 RLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLS  353 (597)
T ss_dssp             SCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECC
T ss_pred             CCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEee
Confidence            78889999999995 6777888999999999999999 6888899999999999999999865 3  6778899999999


Q ss_pred             cCcCcccCCCCCCCCccCCcccCCCCCCCCc
Q 004704          615 YNNLSGRTPDKGQFATFDESSYRGNPSLCAW  645 (735)
Q Consensus       615 ~N~l~~~~p~~~~~~~~~~~~~~gN~~lc~~  645 (735)
                      +|+++|..+. ..+..+....+.+++..|+.
T Consensus       354 ~N~~~~~~~~-~~~~~~~~~~~~~~~~~C~~  383 (597)
T 3oja_B          354 HNDWDCNSLR-ALFRNVARPAVDDADQHCKI  383 (597)
T ss_dssp             SSCEEHHHHH-HHTTTCCTTTBCCCCCCCCT
T ss_pred             CCCCCChhHH-HHHHHHhhhccccccccCCc
Confidence            9999987542 23455666678899999975

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=3.8e-35  Score=303.25  Aligned_cols=254  Identities=35%  Similarity=0.561  Sum_probs=219.3

Q ss_pred             CcEEEcCCCcCCC--CCCccCCCCCCCCEEEccc-CCCCccCCCcc-CCCCccEEEccCCcccccCcccccCCCCCcEEe
Q 004704          316 LEILSMSKNHLEG--NVPVQLNNLERLRILDISE-NRLSGPIASSL-NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLN  391 (735)
Q Consensus       316 L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~L~~-n~l~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~  391 (735)
                      ++.|++++|.+++  .+|..+..+++|++|++++ |.+.+.+|..+ .+++|++|++++|.+++.+|..+..+++|++|+
T Consensus        52 l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~  131 (313)
T 1ogq_A           52 VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLD  131 (313)
T ss_dssp             EEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEE
T ss_pred             EEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEe
Confidence            6666666666666  5666666777777777773 66666666555 677777777777777778888888899999999


Q ss_pred             CCCCcccccCChhhhCCCCccEEEccCCcCCCCCchhhhcCC-CCCEEECcCCcCCCCCCchhhcccccccccCCccCCC
Q 004704          392 LRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQ-KLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGS  470 (735)
Q Consensus       392 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~  470 (735)
                      +++|.+++.+|..+..+++|++|++++|++++.+|..+..++ +|+.|++++|++++.+|..+..+              
T Consensus       132 Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l--------------  197 (313)
T 1ogq_A          132 FSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL--------------  197 (313)
T ss_dssp             CCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC--------------
T ss_pred             CCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCC--------------
Confidence            999999988899999999999999999999988999999988 89999999999998888776543              


Q ss_pred             CCCCcccchhhhcccCCCCCCCccccchhhhhhhhhhhhccccceeEEEEeccccccccCCcccccceEECCCCcccCCC
Q 004704          471 KLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEI  550 (735)
Q Consensus       471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~  550 (735)
                                                                                     + |+.|++++|++++.+
T Consensus       198 ---------------------------------------------------------------~-L~~L~Ls~N~l~~~~  213 (313)
T 1ogq_A          198 ---------------------------------------------------------------N-LAFVDLSRNMLEGDA  213 (313)
T ss_dssp             ---------------------------------------------------------------C-CSEEECCSSEEEECC
T ss_pred             ---------------------------------------------------------------c-ccEEECcCCcccCcC
Confidence                                                                           2 778999999999999


Q ss_pred             CccccccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccCCccccCCCCCCeEEcccCcCcccCCCCCCCCc
Q 004704          551 PSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPDKGQFAT  630 (735)
Q Consensus       551 p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~  630 (735)
                      |..++.+++|+.|+|++|.+++.+|. +..+++|++|||++|++++.+|..+..+++|++|++++|+++|.+|..+.+..
T Consensus       214 ~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~  292 (313)
T 1ogq_A          214 SVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQR  292 (313)
T ss_dssp             GGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGG
T ss_pred             CHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccc
Confidence            99999999999999999999977776 89999999999999999999999999999999999999999999999988999


Q ss_pred             cCCcccCCCCCCCCcccc
Q 004704          631 FDESSYRGNPSLCAWLIQ  648 (735)
Q Consensus       631 ~~~~~~~gN~~lc~~~~~  648 (735)
                      +....+.|||++||.|+.
T Consensus       293 L~~l~l~~N~~lc~~p~~  310 (313)
T 1ogq_A          293 FDVSAYANNKCLCGSPLP  310 (313)
T ss_dssp             SCGGGTCSSSEEESTTSS
T ss_pred             cChHHhcCCCCccCCCCC
Confidence            999999999999997764

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=2e-32  Score=288.18  Aligned_cols=282  Identities=24%  Similarity=0.367  Sum_probs=177.5

Q ss_pred             CCCCCEEEccCCCCCCcCcccccCCCCCCEEEccccccCccccccccCCCCCCEEEeeCCccCCCCCchhhhhcccCcEE
Q 004704          240 CFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEIL  319 (735)
Q Consensus       240 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L  319 (735)
                      +++|++|++++|.+++..+  +..+++|++|++++|.+++ ++ .+..+++|++|++++|.++ .++. +..++. |+.|
T Consensus        65 ~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~-~~-~~~~l~~L~~L~l~~n~i~-~~~~-~~~l~~-L~~L  137 (347)
T 4fmz_A           65 LTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD-IS-ALQNLTNLRELYLNEDNIS-DISP-LANLTK-MYSL  137 (347)
T ss_dssp             CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSEEECTTSCCC-CCGG-GTTCTT-CCEE
T ss_pred             cCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccC-ch-HHcCCCcCCEEECcCCccc-Cchh-hccCCc-eeEE
Confidence            4444444444444443221  4444444444444444442 21 3444455555555555544 2222 334433 5555


Q ss_pred             EcCCCcCCCCCCccCCCCCCCCEEEcccCCCCccCCCccCCCCccEEEccCCcccccCcccccCCCCCcEEeCCCCcccc
Q 004704          320 SMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSG  399 (735)
Q Consensus       320 ~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~  399 (735)
                      ++++|......+ .+..+++|++|++++|.+.+..+ ...+++|+.|++++|.+.+..+  +..+++|+.|++++|.+++
T Consensus       138 ~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~  213 (347)
T 4fmz_A          138 NLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITD  213 (347)
T ss_dssp             ECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC
T ss_pred             ECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCC
Confidence            555554332222 25555666666666666554333 2356666777777776664422  6677778888888887774


Q ss_pred             cCChhhhCCCCccEEEccCCcCCCCCchhhhcCCCCCEEECcCCcCCCCCCchhhcccccccccCCccCCCCCCCcccch
Q 004704          400 RIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDE  479 (735)
Q Consensus       400 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~  479 (735)
                      ..+  +..+++|++|++++|.+++..+  +..+++|+.|++++|++++. + .+.                         
T Consensus       214 ~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~-~~~-------------------------  262 (347)
T 4fmz_A          214 ITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI-N-AVK-------------------------  262 (347)
T ss_dssp             CGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-G-GGT-------------------------
T ss_pred             Cch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC-h-hHh-------------------------
Confidence            433  6777888888888888875433  77888888888888887642 1 111                         


Q ss_pred             hhhcccCCCCCCCccccchhhhhhhhhhhhccccceeEEEEeccccccccCCcccccceEECCCCcccCCCCcccccccc
Q 004704          480 EIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQA  559 (735)
Q Consensus       480 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~  559 (735)
                                                                          .+++|+.|++++|++++ + +.+..+++
T Consensus       263 ----------------------------------------------------~l~~L~~L~l~~n~l~~-~-~~~~~l~~  288 (347)
T 4fmz_A          263 ----------------------------------------------------DLTKLKMLNVGSNQISD-I-SVLNNLSQ  288 (347)
T ss_dssp             ----------------------------------------------------TCTTCCEEECCSSCCCC-C-GGGGGCTT
T ss_pred             ----------------------------------------------------cCCCcCEEEccCCccCC-C-hhhcCCCC
Confidence                                                                23577888888888874 3 45788889


Q ss_pred             CCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccCCccccCCCCCCeEEcccCcCc
Q 004704          560 ILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLS  619 (735)
Q Consensus       560 L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~  619 (735)
                      |+.|++++|.+++..|..|+++++|++|++++|++++..|  +..+++|++|++++|+++
T Consensus       289 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          289 LNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             CSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             CCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence            9999999999988888888999999999999999887666  788889999999999875

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=1.7e-32  Score=293.48  Aligned_cols=312  Identities=21%  Similarity=0.222  Sum_probs=219.7

Q ss_pred             CCCCcCEEEccCCcCCCcCChhHHHhcccCcEEECcCCcCCCCCCcccCCCCCCCEEECCCccccCccchhhhhCCCCCC
Q 004704          165 KHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLE  244 (735)
Q Consensus       165 ~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~  244 (735)
                      .++++++|++++|.++ .+|..++..+++|++|++++|.+++..+..+..+++|++|++++|.++ .+++..+.++++|+
T Consensus        43 ~l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~  120 (390)
T 3o6n_A           43 TLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLT  120 (390)
T ss_dssp             GGCCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCC
T ss_pred             ccCCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCC-cCCHHHhcCCCCCC
Confidence            3567788888888777 677777666788888888888887666667788888888888888877 44445556777788


Q ss_pred             EEEccCCCCCCcCcccccCCCCCCEEEccccccCccccccccCCCCCCEEEeeCCccCCCCCchhhhhcccCcEEEcCCC
Q 004704          245 LLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKN  324 (735)
Q Consensus       245 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n  324 (735)
                      +|++++|.++...+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+++. +  +..++. |+.|++++|
T Consensus       121 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~--~~~l~~-L~~L~l~~n  196 (390)
T 3o6n_A          121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-D--LSLIPS-LFHANVSYN  196 (390)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC-C--GGGCTT-CSEEECCSS
T ss_pred             EEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc-c--cccccc-cceeecccc
Confidence            888888877755555567777777777777777766666677777777777777777632 2  333444 666666666


Q ss_pred             cCCCCCCccCCCCCCCCEEEcccCCCCccCCCccCCCCccEEEccCCcccccCcccccCCCCCcEEeCCCCcccccCChh
Q 004704          325 HLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQ  404 (735)
Q Consensus       325 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~  404 (735)
                      .+++.     ...++|++|++++|                       .+... |..  ..++|+.|++++|.+++.  .+
T Consensus       197 ~l~~~-----~~~~~L~~L~l~~n-----------------------~l~~~-~~~--~~~~L~~L~l~~n~l~~~--~~  243 (390)
T 3o6n_A          197 LLSTL-----AIPIAVEELDASHN-----------------------SINVV-RGP--VNVELTILKLQHNNLTDT--AW  243 (390)
T ss_dssp             CCSEE-----ECCSSCSEEECCSS-----------------------CCCEE-ECC--CCSSCCEEECCSSCCCCC--GG
T ss_pred             ccccc-----CCCCcceEEECCCC-----------------------eeeec-ccc--ccccccEEECCCCCCccc--HH
Confidence            55431     11234444444444                       44432 211  235677777777777643  46


Q ss_pred             hhCCCCccEEEccCCcCCCCCchhhhcCCCCCEEECcCCcCCCCCCchhhcccccccccCCccCCCCCCCcccchhhhcc
Q 004704          405 INEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFG  484 (735)
Q Consensus       405 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~  484 (735)
                      +..+++|++|++++|.+.+..|..+..+++|+.|++++|++++ +|..+                               
T Consensus       244 l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~-------------------------------  291 (390)
T 3o6n_A          244 LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYG-------------------------------  291 (390)
T ss_dssp             GGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSS-------------------------------
T ss_pred             HcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCccc-------------------------------
Confidence            7777888888888888887777788888888888888888763 22211                               


Q ss_pred             cCCCCCCCccccchhhhhhhhhhhhccccceeEEEEeccccccccCCcccccceEECCCCcccCCCCccccccccCCeEe
Q 004704          485 SLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALN  564 (735)
Q Consensus       485 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~  564 (735)
                                                                    ..+++|+.|++++|+++ .+|..++.+++|+.|+
T Consensus       292 ----------------------------------------------~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~  324 (390)
T 3o6n_A          292 ----------------------------------------------QPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLY  324 (390)
T ss_dssp             ----------------------------------------------SCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEE
T ss_pred             ----------------------------------------------CCCCCCCEEECCCCcce-ecCccccccCcCCEEE
Confidence                                                          12367888899999888 6777888899999999


Q ss_pred             CCCCcCcccCcccccCcCCCCEEeCCCCccccc
Q 004704          565 LSNNSLSGSIPESFSNLKMIESLDISYNKLTGQ  597 (735)
Q Consensus       565 Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~  597 (735)
                      +++|.+++. |  +..+++|+.|++++|++++.
T Consensus       325 L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~  354 (390)
T 3o6n_A          325 LDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCN  354 (390)
T ss_dssp             CCSSCCCCC-C--CCTTCCCSEEECCSSCEEHH
T ss_pred             CCCCcccee-C--chhhccCCEEEcCCCCccch
Confidence            999999854 3  77889999999999999864

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=5.8e-32  Score=284.67  Aligned_cols=305  Identities=22%  Similarity=0.287  Sum_probs=186.6

Q ss_pred             CCCCCCEEEccCCcCcccCchHHHhCCCCCcEEECcCCcCcccCcCCcCCCCCcCEEEccCCcCCCcCChhHHHhcccCc
Q 004704          116 HQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLM  195 (735)
Q Consensus       116 ~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~  195 (735)
                      .+++|++|++++|.+. .++.  +..+++|++|++++|.+++..+  +..+++|++|++++|.++ .++ .+ ..+++|+
T Consensus        42 ~l~~L~~L~l~~~~i~-~~~~--~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~-~~~-~~-~~l~~L~  113 (347)
T 4fmz_A           42 ELESITKLVVAGEKVA-SIQG--IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKIT-DIS-AL-QNLTNLR  113 (347)
T ss_dssp             HHTTCSEEECCSSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCG-GG-TTCTTCS
T ss_pred             hcccccEEEEeCCccc-cchh--hhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCccc-Cch-HH-cCCCcCC
Confidence            3444444444444443 3332  2244444445554444444322  444455555555555544 222 12 2245555


Q ss_pred             EEECcCCcCCCCCCcccCCCCCCCEEECCCccccCccchhhhhCCCCCCEEEccCCCCCCcCcccccCCCCCCEEEcccc
Q 004704          196 YMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENN  275 (735)
Q Consensus       196 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  275 (735)
                      +|++++|.+.+ ++. +..+++|++|++++|.....++.  +..+++|++|++++|.+.+..+  +..+++|++|++++|
T Consensus       114 ~L~l~~n~i~~-~~~-~~~l~~L~~L~l~~n~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n  187 (347)
T 4fmz_A          114 ELYLNEDNISD-ISP-LANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYN  187 (347)
T ss_dssp             EEECTTSCCCC-CGG-GTTCTTCCEEECTTCTTCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTS
T ss_pred             EEECcCCcccC-chh-hccCCceeEEECCCCCCcccccc--hhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCC
Confidence            55555555543 222 55555566666665544333332  3456666666666666554332  556666666666666


Q ss_pred             ccCccccccccCCCCCCEEEeeCCccCCCCCchhhhhcccCcEEEcCCCcCCCCCCccCCCCCCCCEEEcccCCCCccCC
Q 004704          276 NFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIA  355 (735)
Q Consensus       276 ~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~  355 (735)
                      .+.+.. . +..+++|+.|++++|.+++..+  +..++. |++|++++|++++..+  +..+++|++|++++|.+++. +
T Consensus       188 ~l~~~~-~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~-L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~  259 (347)
T 4fmz_A          188 QIEDIS-P-LASLTSLHYFTAYVNQITDITP--VANMTR-LNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI-N  259 (347)
T ss_dssp             CCCCCG-G-GGGCTTCCEEECCSSCCCCCGG--GGGCTT-CCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-G
T ss_pred             cccccc-c-ccCCCccceeecccCCCCCCch--hhcCCc-CCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC-h
Confidence            665332 2 5566677777777776663322  455554 7777777777764433  66777777777777777653 3


Q ss_pred             CccCCCCccEEEccCCcccccCcccccCCCCCcEEeCCCCcccccCChhhhCCCCccEEEccCCcCCCCCchhhhcCCCC
Q 004704          356 SSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKL  435 (735)
Q Consensus       356 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  435 (735)
                      ....+++|+.|++++|.+++.  +.+..+++|+.|++++|++++..+..+..+++|++|++++|++++..|  +..+++|
T Consensus       260 ~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L  335 (347)
T 4fmz_A          260 AVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKM  335 (347)
T ss_dssp             GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTC
T ss_pred             hHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhcc
Confidence            333677888888888887764  457788899999999999988888889999999999999999986555  8889999


Q ss_pred             CEEECcCCcCC
Q 004704          436 AMMDLSRNKFS  446 (735)
Q Consensus       436 ~~L~Ls~N~l~  446 (735)
                      +.|++++|+++
T Consensus       336 ~~L~l~~N~i~  346 (347)
T 4fmz_A          336 DSADFANQVIK  346 (347)
T ss_dssp             SEESSSCC---
T ss_pred             ceeehhhhccc
Confidence            99999999875

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=9.7e-32  Score=303.41  Aligned_cols=312  Identities=21%  Similarity=0.208  Sum_probs=216.4

Q ss_pred             CCCcCEEEccCCcCCCcCChhHHHhcccCcEEECcCCcCCCCCCcccCCCCCCCEEECCCccccCccchhhhhCCCCCCE
Q 004704          166 HDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLEL  245 (735)
Q Consensus       166 ~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~  245 (735)
                      +.+++.+++++|.+. .+|..++..+++|++|++++|.+++..|..+..+++|++|++++|.+++ +++..+.++++|++
T Consensus        50 l~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~  127 (597)
T 3oja_B           50 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRY-LPPHVFQNVPLLTV  127 (597)
T ss_dssp             GCCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCE
T ss_pred             CCCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCC-CCHHHHcCCCCCCE
Confidence            456777777777776 6677766667788888888888876666677778888888888887773 45555567777777


Q ss_pred             EEccCCCCCCcCcccccCCCCCCEEEccccccCccccccccCCCCCCEEEeeCCccCCCCCchhhhhcccCcEEEcCCCc
Q 004704          246 LDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNH  325 (735)
Q Consensus       246 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~  325 (735)
                      |++++|.+++..+..|.++++|++|++++|.+++..|..+..+++|++|++++|.+++. +  +..++. |+.|++++|.
T Consensus       128 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~--~~~l~~-L~~L~l~~n~  203 (597)
T 3oja_B          128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-D--LSLIPS-LFHANVSYNL  203 (597)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC-C--GGGCTT-CSEEECCSSC
T ss_pred             EEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc-C--hhhhhh-hhhhhcccCc
Confidence            77777777765555567777777777777777766666677777777777777777632 2  333444 6666666665


Q ss_pred             CCCCCCccCCCCCCCCEEEcccCCCCccCCCccCCCCccEEEccCCcccccCcccccCCCCCcEEeCCCCcccccCChhh
Q 004704          326 LEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQI  405 (735)
Q Consensus       326 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~  405 (735)
                      +++.     ....+|+.|++++|.+..                       ..+. +  .++|+.|++++|.+++  +.++
T Consensus       204 l~~l-----~~~~~L~~L~ls~n~l~~-----------------------~~~~-~--~~~L~~L~L~~n~l~~--~~~l  250 (597)
T 3oja_B          204 LSTL-----AIPIAVEELDASHNSINV-----------------------VRGP-V--NVELTILKLQHNNLTD--TAWL  250 (597)
T ss_dssp             CSEE-----ECCTTCSEEECCSSCCCE-----------------------EECS-C--CSCCCEEECCSSCCCC--CGGG
T ss_pred             cccc-----cCCchhheeeccCCcccc-----------------------cccc-c--CCCCCEEECCCCCCCC--Chhh
Confidence            5531     122345555555554432                       2111 1  2467777777777764  3567


Q ss_pred             hCCCCccEEEccCCcCCCCCchhhhcCCCCCEEECcCCcCCCCCCchhhcccccccccCCccCCCCCCCcccchhhhccc
Q 004704          406 NEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGS  485 (735)
Q Consensus       406 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  485 (735)
                      ..+++|+.|+|++|.+.+..|..+..+++|+.|++++|++++ +|..+                                
T Consensus       251 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~--------------------------------  297 (597)
T 3oja_B          251 LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYG--------------------------------  297 (597)
T ss_dssp             GGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSS--------------------------------
T ss_pred             ccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCccc--------------------------------
Confidence            777788888888888877777778888888888888887764 22211                                


Q ss_pred             CCCCCCCccccchhhhhhhhhhhhccccceeEEEEeccccccccCCcccccceEECCCCcccCCCCccccccccCCeEeC
Q 004704          486 LGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNL  565 (735)
Q Consensus       486 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~L  565 (735)
                                                                   ..+++|+.|+|++|.++ .+|..++.+++|+.|+|
T Consensus       298 ---------------------------------------------~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L  331 (597)
T 3oja_B          298 ---------------------------------------------QPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYL  331 (597)
T ss_dssp             ---------------------------------------------SCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEEC
T ss_pred             ---------------------------------------------ccCCCCcEEECCCCCCC-ccCcccccCCCCCEEEC
Confidence                                                         12367788888888888 67888888899999999


Q ss_pred             CCCcCcccCcccccCcCCCCEEeCCCCcccccC
Q 004704          566 SNNSLSGSIPESFSNLKMIESLDISYNKLTGQI  598 (735)
Q Consensus       566 s~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~  598 (735)
                      ++|.+++. |  ++.+++|+.|++++|.+.+..
T Consensus       332 ~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~~  361 (597)
T 3oja_B          332 DHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNS  361 (597)
T ss_dssp             CSSCCCCC-C--CCTTCCCSEEECCSSCEEHHH
T ss_pred             CCCCCCCc-C--hhhcCCCCEEEeeCCCCCChh
Confidence            99998854 3  677888999999999988643

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=5e-33  Score=287.33  Aligned_cols=251  Identities=29%  Similarity=0.494  Sum_probs=193.4

Q ss_pred             CCCCEEEeeCCccCC--CCCchhhhhcccCcEEEcCC-CcCCCCCCccCCCCCCCCEEEcccCCCCccCCCcc-CCCCcc
Q 004704          289 TSLQVLDISNNMLSG--HIPHWMGNFSSELEILSMSK-NHLEGNVPVQLNNLERLRILDISENRLSGPIASSL-NLSSVE  364 (735)
Q Consensus       289 ~~L~~L~l~~n~l~~--~~p~~~~~~~~~L~~L~l~~-n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~-~l~~L~  364 (735)
                      .+++.|++++|.+++  .+|..+..++. |++|++++ |.+.+.+|..+..+++|++|++++|.+++.++..+ .+++|+
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~-L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~  128 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPY-LNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV  128 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTT-CSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCC-CCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence            355666666666665  56666666555 66666663 66666666666666666677776666665555544 677777


Q ss_pred             EEEccCCcccccCcccccCCCCCcEEeCCCCcccccCChhhhCCC-CccEEEccCCcCCCCCchhhhcCCCCCEEECcCC
Q 004704          365 HLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHS-NLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRN  443 (735)
Q Consensus       365 ~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N  443 (735)
                      +|++++|.+++.+|..+..+++|++|++++|++++.+|..+..++ +|++|++++|.+++.+|..+..++ |+.|++++|
T Consensus       129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N  207 (313)
T 1ogq_A          129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRN  207 (313)
T ss_dssp             EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSS
T ss_pred             EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCC
Confidence            777777777777777888888888888888888878888888877 888888888888888888888887 888888888


Q ss_pred             cCCCCCCchhhcccccccccCCccCCCCCCCcccchhhhcccCCCCCCCccccchhhhhhhhhhhhccccceeEEEEecc
Q 004704          444 KFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKN  523 (735)
Q Consensus       444 ~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  523 (735)
                      ++++..|..+..                                                                    
T Consensus       208 ~l~~~~~~~~~~--------------------------------------------------------------------  219 (313)
T 1ogq_A          208 MLEGDASVLFGS--------------------------------------------------------------------  219 (313)
T ss_dssp             EEEECCGGGCCT--------------------------------------------------------------------
T ss_pred             cccCcCCHHHhc--------------------------------------------------------------------
Confidence            888766665543                                                                    


Q ss_pred             ccccccCCcccccceEECCCCcccCCCCccccccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccCCcccc
Q 004704          524 RYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLT  603 (735)
Q Consensus       524 ~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~  603 (735)
                               +++|+.|++++|++++.+|. +..+++|++|+|++|++++.+|..|+.+++|++|||++|+++|.+|.. .
T Consensus       220 ---------l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~  288 (313)
T 1ogq_A          220 ---------DKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-G  288 (313)
T ss_dssp             ---------TSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-T
T ss_pred             ---------CCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-c
Confidence                     25677788888888866665 788899999999999999899999999999999999999999999886 8


Q ss_pred             CCCCCCeEEcccCc-Ccc
Q 004704          604 ALNFLSIFNVSYNN-LSG  620 (735)
Q Consensus       604 ~l~~L~~L~ls~N~-l~~  620 (735)
                      .+++|+.+++++|+ +.|
T Consensus       289 ~l~~L~~l~l~~N~~lc~  306 (313)
T 1ogq_A          289 NLQRFDVSAYANNKCLCG  306 (313)
T ss_dssp             TGGGSCGGGTCSSSEEES
T ss_pred             cccccChHHhcCCCCccC
Confidence            88999999999998 555

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.98  E-value=3.2e-35  Score=322.44  Aligned_cols=185  Identities=18%  Similarity=0.173  Sum_probs=115.2

Q ss_pred             CCcCEEEccCCcCCCcCChhHHHhcccCcEEECcCCcCCC----CCCcccCCCCCCCEEECCCccccCccchhhhhCCC-
Q 004704          167 DFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEG----NIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCF-  241 (735)
Q Consensus       167 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~-  241 (735)
                      ++|++|++++|+++......++..+++|++|++++|.+++    .++..+..+++|++|++++|.+.+..+..++..+. 
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~   82 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   82 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence            4567788887777644444445557788888888888764    34556677788888888888877545555555565 


Q ss_pred             ---CCCEEEccCCCCCC----cCcccccCCCCCCEEEccccccCcccccccc-----CCCCCCEEEeeCCccCCCC----
Q 004704          242 ---SLELLDLSNNNFEG----QFFSEYMNLTRLRHLYFENNNFSGKIKDGLL-----SSTSLQVLDISNNMLSGHI----  305 (735)
Q Consensus       242 ---~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~-----~~~~L~~L~l~~n~l~~~~----  305 (735)
                         +|++|++++|.++.    .++..+..+++|++|++++|.+++..+..+.     ..++|++|++++|.+++..    
T Consensus        83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l  162 (461)
T 1z7x_W           83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL  162 (461)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence               58888888887774    3466677777777777777777644333221     2456777777777766432    


Q ss_pred             CchhhhhcccCcEEEcCCCcCCCCCCccCC-----CCCCCCEEEcccCCCCc
Q 004704          306 PHWMGNFSSELEILSMSKNHLEGNVPVQLN-----NLERLRILDISENRLSG  352 (735)
Q Consensus       306 p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~-----~l~~L~~L~L~~n~l~~  352 (735)
                      +..+..++. |++|++++|.+.+..+..+.     ..++|++|++++|.+++
T Consensus       163 ~~~l~~~~~-L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~  213 (461)
T 1z7x_W          163 ASVLRAKPD-FKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTS  213 (461)
T ss_dssp             HHHHHHCTT-CCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBT
T ss_pred             HHHHhhCCC-CCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcH
Confidence            333344444 66666666665533222221     13355555555555543

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.98  E-value=4e-31  Score=276.08  Aligned_cols=290  Identities=21%  Similarity=0.280  Sum_probs=192.4

Q ss_pred             CCCEEECCCccccCccchhhhhCCCCCCEEEccCCCCCCcCcccccCCCCCCEEEccccccCccccccccCCCCCCEEEe
Q 004704          217 ELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDI  296 (735)
Q Consensus       217 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l  296 (735)
                      +++.++++++.++ .+|..+   .++|++|++++|.+.+..+..|.++++|++|++++|.+++..|..+..+++|++|++
T Consensus        34 ~l~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  109 (332)
T 2ft3_A           34 HLRVVQCSDLGLK-AVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI  109 (332)
T ss_dssp             ETTEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred             cCCEEECCCCCcc-ccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence            6788888888876 666644   357888888888888766777888888888888888888777777888888888888


Q ss_pred             eCCccCCCCCchhhhhcccCcEEEcCCCcCCCCCCccCCCCCCCCEEEcccCCCCccCCCccCCCCccEEEccCCccccc
Q 004704          297 SNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGL  376 (735)
Q Consensus       297 ~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~  376 (735)
                      ++|.++ .+|..+.  + +|++|++++|++.+..+..+..+++|++|++++|.++..                     +.
T Consensus       110 ~~n~l~-~l~~~~~--~-~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~---------------------~~  164 (332)
T 2ft3_A          110 SKNHLV-EIPPNLP--S-SLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENS---------------------GF  164 (332)
T ss_dssp             CSSCCC-SCCSSCC--T-TCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGG---------------------GS
T ss_pred             CCCcCC-ccCcccc--c-cCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccC---------------------CC
Confidence            888877 5665544  3 377777777777766666677777777777777766421                     12


Q ss_pred             CcccccCCCCCcEEeCCCCcccccCChhhhCCCCccEEEccCCcCCCCCchhhhcCCCCCEEECcCCcCCCCCCchhhcc
Q 004704          377 IPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANV  456 (735)
Q Consensus       377 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l  456 (735)
                      .+..+..+ +|+.|++++|++++ +|..+.  ++|++|++++|.+++..+..+..+++|+.|++++|++++..+..+.. 
T Consensus       165 ~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~-  239 (332)
T 2ft3_A          165 EPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSF-  239 (332)
T ss_dssp             CTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGG-
T ss_pred             CcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhC-
Confidence            23333333 45555555555552 333332  45666666666666555566666666666666666666544443332 


Q ss_pred             cccccccCCccCCCCCCCcccchhhhcccCCCCCCCccccchhhhhhhhhhhhccccceeEEEEeccccccccCCccccc
Q 004704          457 LSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRV  536 (735)
Q Consensus       457 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L  536 (735)
                                                                                                  +++|
T Consensus       240 ----------------------------------------------------------------------------l~~L  243 (332)
T 2ft3_A          240 ----------------------------------------------------------------------------LPTL  243 (332)
T ss_dssp             ----------------------------------------------------------------------------CTTC
T ss_pred             ----------------------------------------------------------------------------CCCC
Confidence                                                                                        2456


Q ss_pred             ceEECCCCcccCCCCccccccccCCeEeCCCCcCcccCcccccCc------CCCCEEeCCCCccc--ccCCccccCCCCC
Q 004704          537 TGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNL------KMIESLDISYNKLT--GQIPPQLTALNFL  608 (735)
Q Consensus       537 ~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l------~~L~~LdLs~N~l~--~~~p~~l~~l~~L  608 (735)
                      +.|++++|+++ .+|..++.+++|+.|++++|++++..+..|...      ..|+.|++++|.+.  +..|..+..++.|
T Consensus       244 ~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L  322 (332)
T 2ft3_A          244 RELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDR  322 (332)
T ss_dssp             CEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCS
T ss_pred             CEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchh
Confidence            66777777776 666667777777777777777776666666543      56777888888776  5667777777888


Q ss_pred             CeEEcccCc
Q 004704          609 SIFNVSYNN  617 (735)
Q Consensus       609 ~~L~ls~N~  617 (735)
                      +.+++++|+
T Consensus       323 ~~l~l~~n~  331 (332)
T 2ft3_A          323 LAIQFGNYK  331 (332)
T ss_dssp             TTEEC----
T ss_pred             hhhhccccc
Confidence            888877774

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=1.2e-30  Score=272.62  Aligned_cols=250  Identities=26%  Similarity=0.322  Sum_probs=177.3

Q ss_pred             cCcEEECcCCcCCCCCCcccCCCCCCCEEECCCccccCccchhhhhCCCCCCEEEccCCCCCCcCcccccCCCCCCEEEc
Q 004704          193 KLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYF  272 (735)
Q Consensus       193 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  272 (735)
                      +++.++++++.++ .+|..+.  ++|++|++++|.++ .++...+.++++|++|++++|.+++..+..|.++++|++|++
T Consensus        34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  109 (332)
T 2ft3_A           34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI  109 (332)
T ss_dssp             ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred             cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCC-ccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence            4666666666665 4554442  46666666666665 344444456667777777777776666667777777777777


Q ss_pred             cccccCccccccccCCCCCCEEEeeCCccCCCCCchhhhhcccCcEEEcCCCcCC--CCCCccCCCCCCCCEEEcccCCC
Q 004704          273 ENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLE--GNVPVQLNNLERLRILDISENRL  350 (735)
Q Consensus       273 ~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~--~~~~~~l~~l~~L~~L~L~~n~l  350 (735)
                      ++|.++ .+|..+.  ++|++|++++|.+++..+..+..++. |+.|++++|.++  +..+..+..+ +|++|++++|++
T Consensus       110 ~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l  184 (332)
T 2ft3_A          110 SKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRN-MNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKL  184 (332)
T ss_dssp             CSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSS-CCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBC
T ss_pred             CCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCcc-CCEEECCCCccccCCCCcccccCC-ccCEEECcCCCC
Confidence            777776 4444433  67777777777777444445666665 888888888775  3566677777 888888888888


Q ss_pred             CccCCCccCCCCccEEEccCCcccccCcccccCCCCCcEEeCCCCcccccCChhhhCCCCccEEEccCCcCCCCCchhhh
Q 004704          351 SGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLC  430 (735)
Q Consensus       351 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  430 (735)
                      ++.+...  .++|++|++++|.+++..+..+..+++|+.|++++|++++..+.++..+++|++|++++|+++ .+|..+.
T Consensus       185 ~~l~~~~--~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~  261 (332)
T 2ft3_A          185 TGIPKDL--PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLP  261 (332)
T ss_dssp             SSCCSSS--CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGG
T ss_pred             CccCccc--cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhh
Confidence            7644332  267888888888888777778888888888888888888777778888888888888888888 6777788


Q ss_pred             cCCCCCEEECcCCcCCCCCCchhh
Q 004704          431 QLQKLAMMDLSRNKFSGSIPPCFA  454 (735)
Q Consensus       431 ~l~~L~~L~Ls~N~l~~~~p~~~~  454 (735)
                      .+++|+.|++++|++++..+..|.
T Consensus       262 ~l~~L~~L~l~~N~l~~~~~~~~~  285 (332)
T 2ft3_A          262 DLKLLQVVYLHTNNITKVGVNDFC  285 (332)
T ss_dssp             GCTTCCEEECCSSCCCBCCTTSSS
T ss_pred             cCccCCEEECCCCCCCccChhHcc
Confidence            888888888888888755544443

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=1.2e-34  Score=317.90  Aligned_cols=383  Identities=19%  Similarity=0.124  Sum_probs=273.6

Q ss_pred             CCCCEEeCCCCcccccCChhhhhcCCCCCeeecccccccccccCCCCCCCCCeeEEEeeCCCCCC----CCchhhhCCCC
Q 004704           44 TSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNG----SYPDFLLHQYH  119 (735)
Q Consensus        44 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~----~~~~~l~~l~~  119 (735)
                      ++|++||+++|++++......+..+++|++                         |++++|++++    .++..+..+++
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~-------------------------L~L~~~~l~~~~~~~l~~~l~~~~~   57 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQV-------------------------VRLDDCGLTEARCKDISSALRVNPA   57 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSE-------------------------EEEESSCCCHHHHHHHHHHHHTCTT
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccE-------------------------EEccCCCCCHHHHHHHHHHHHhCCC
Confidence            457788888887764332223455555554                         4555555542    35667788889


Q ss_pred             CCEEEccCCcCcccCchHHHhCCC----CCcEEECcCCcCcc----cCcCCcCCCCCcCEEEccCCcCCCcCChhHHHh-
Q 004704          120 LKYLDLSHNKLVGNFPTWLLRNNP----KLEVLLLKNNSFSG----ILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVI-  190 (735)
Q Consensus       120 L~~L~Ls~n~l~~~~p~~~~~~l~----~L~~L~L~~n~l~~----~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~-  190 (735)
                      |++|++++|.+++..+..++..++    +|++|++++|.++.    ..+..+..+++|++|++++|.+++..+..+... 
T Consensus        58 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l  137 (461)
T 1z7x_W           58 LAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGL  137 (461)
T ss_dssp             CCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHH
T ss_pred             cCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHH
Confidence            999999999887655666665666    69999999998884    346678888999999999998875545554443 


Q ss_pred             ---cccCcEEECcCCcCCCC----CCcccCCCCCCCEEECCCccccCccchhhh----hCCCCCCEEEccCCCCCCc---
Q 004704          191 ---LQKLMYMDISKNCFEGN----IPYSAGEMKELSLLDLSRNYFSGGLSQSVV----TGCFSLELLDLSNNNFEGQ---  256 (735)
Q Consensus       191 ---l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~----~~l~~L~~L~L~~n~l~~~---  256 (735)
                         .++|++|++++|.+++.    ++..+..+++|++|++++|.+++..+..+.    ...++|++|++++|.+++.   
T Consensus       138 ~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~  217 (461)
T 1z7x_W          138 LDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCR  217 (461)
T ss_dssp             TSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHH
T ss_pred             hcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHH
Confidence               34699999999988763    355566788999999999988744333332    2356899999999998864   


Q ss_pred             -CcccccCCCCCCEEEccccccCccc-----cccccCCCCCCEEEeeCCccCCC----CCchhhhhcccCcEEEcCCCcC
Q 004704          257 -FFSEYMNLTRLRHLYFENNNFSGKI-----KDGLLSSTSLQVLDISNNMLSGH----IPHWMGNFSSELEILSMSKNHL  326 (735)
Q Consensus       257 -~~~~~~~l~~L~~L~L~~n~l~~~~-----~~~l~~~~~L~~L~l~~n~l~~~----~p~~~~~~~~~L~~L~l~~n~l  326 (735)
                       ++..+..+++|++|++++|.+++..     +..+..+++|++|++++|.+++.    ++..+..++. |++|++++|.+
T Consensus       218 ~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~-L~~L~Ls~n~i  296 (461)
T 1z7x_W          218 DLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKES-LKELSLAGNEL  296 (461)
T ss_dssp             HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTT-CCEEECTTCCC
T ss_pred             HHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCC-cceEECCCCCC
Confidence             4667778899999999999887532     22233578999999999988843    5666666766 99999999988


Q ss_pred             CCCCCccCC-----CCCCCCEEEcccCCCCccC----CCcc-CCCCccEEEccCCcccccCcccccC-----CCCCcEEe
Q 004704          327 EGNVPVQLN-----NLERLRILDISENRLSGPI----ASSL-NLSSVEHLSLQKNALNGLIPGELFR-----SCKLVTLN  391 (735)
Q Consensus       327 ~~~~~~~l~-----~l~~L~~L~L~~n~l~~~~----~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~-----~~~L~~L~  391 (735)
                      .+..+..+.     ..++|++|++++|.+++..    +..+ .+++|++|++++|.+.+..+..+..     .++|++|+
T Consensus       297 ~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~  376 (461)
T 1z7x_W          297 GDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLW  376 (461)
T ss_dssp             HHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEE
T ss_pred             chHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEE
Confidence            654333222     3368999999999887652    2222 5788999999999887665544443     67899999


Q ss_pred             CCCCcccc----cCChhhhCCCCccEEEccCCcCCCCCchhhh-----cCCCCCEEECcCCcCCCCCCch
Q 004704          392 LRDNTFSG----RIPHQINEHSNLRFLLLGGNHLQGPIPDQLC-----QLQKLAMMDLSRNKFSGSIPPC  452 (735)
Q Consensus       392 l~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-----~l~~L~~L~Ls~N~l~~~~p~~  452 (735)
                      +++|.+++    .+|..+..+++|++|++++|++++.....+.     ...+|+.|++.++.+....+..
T Consensus       377 L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~~~~~  446 (461)
T 1z7x_W          377 LADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDR  446 (461)
T ss_dssp             CTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHH
T ss_pred             CCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCHHHHHH
Confidence            99999886    6788888889999999999988754222222     2346888888888776444443

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=1.8e-30  Score=270.99  Aligned_cols=292  Identities=22%  Similarity=0.281  Sum_probs=188.7

Q ss_pred             CCCCEEECCCccccCccchhhhhCCCCCCEEEccCCCCCCcCcccccCCCCCCEEEccccccCccccccccCCCCCCEEE
Q 004704          216 KELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLD  295 (735)
Q Consensus       216 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~  295 (735)
                      .+++.++++++.++ .+|..+   .+.+++|++++|.+++..+..|.++++|++|++++|.+++..|..+..+++|++|+
T Consensus        31 c~l~~l~~~~~~l~-~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  106 (330)
T 1xku_A           31 CHLRVVQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLY  106 (330)
T ss_dssp             EETTEEECTTSCCC-SCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred             CCCeEEEecCCCcc-ccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEE
Confidence            36788888888776 566543   35778888888888876666778888888888888888766677777888888888


Q ss_pred             eeCCccCCCCCchhhhhcccCcEEEcCCCcCCCCCCccCCCCCCCCEEEcccCCCCccCCCccCCCCccEEEccCCcccc
Q 004704          296 ISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNG  375 (735)
Q Consensus       296 l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~  375 (735)
                      +++|.++ .+|..+.  + +|++|++++|++++..+..+..+++|++|++++|.+...                     +
T Consensus       107 Ls~n~l~-~l~~~~~--~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---------------------~  161 (330)
T 1xku_A          107 LSKNQLK-ELPEKMP--K-TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS---------------------G  161 (330)
T ss_dssp             CCSSCCS-BCCSSCC--T-TCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGG---------------------G
T ss_pred             CCCCcCC-ccChhhc--c-cccEEECCCCcccccCHhHhcCCccccEEECCCCcCCcc---------------------C
Confidence            8888777 5665443  2 377777777777766666666777777777777666421                     1


Q ss_pred             cCcccccCCCCCcEEeCCCCcccccCChhhhCCCCccEEEccCCcCCCCCchhhhcCCCCCEEECcCCcCCCCCCchhhc
Q 004704          376 LIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFAN  455 (735)
Q Consensus       376 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~  455 (735)
                      ..+..+..+++|++|++++|.++ .+|..+.  ++|++|++++|.+++..+..+..+++|+.|++++|++++..+..+..
T Consensus       162 ~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  238 (330)
T 1xku_A          162 IENGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLAN  238 (330)
T ss_dssp             BCTTGGGGCTTCCEEECCSSCCC-SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGG
T ss_pred             cChhhccCCCCcCEEECCCCccc-cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccC
Confidence            23344455555555555555555 2333332  56666666666666555566666666666666666665444433322


Q ss_pred             ccccccccCCccCCCCCCCcccchhhhcccCCCCCCCccccchhhhhhhhhhhhccccceeEEEEeccccccccCCcccc
Q 004704          456 VLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNR  535 (735)
Q Consensus       456 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  535 (735)
                                                                                                   +++
T Consensus       239 -----------------------------------------------------------------------------l~~  241 (330)
T 1xku_A          239 -----------------------------------------------------------------------------TPH  241 (330)
T ss_dssp             -----------------------------------------------------------------------------STT
T ss_pred             -----------------------------------------------------------------------------CCC
Confidence                                                                                         245


Q ss_pred             cceEECCCCcccCCCCccccccccCCeEeCCCCcCcccCcccccC------cCCCCEEeCCCCcccc--cCCccccCCCC
Q 004704          536 VTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSN------LKMIESLDISYNKLTG--QIPPQLTALNF  607 (735)
Q Consensus       536 L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~------l~~L~~LdLs~N~l~~--~~p~~l~~l~~  607 (735)
                      |+.|++++|+++ .+|..+..+++|++|++++|++++..+..|..      ...|+.|++++|.+..  ..|..+..+..
T Consensus       242 L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~  320 (330)
T 1xku_A          242 LRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYV  320 (330)
T ss_dssp             CCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCC
T ss_pred             CCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccc
Confidence            566666666666 56666677777777777777777655555543      2667777777777753  45667777777


Q ss_pred             CCeEEcccCc
Q 004704          608 LSIFNVSYNN  617 (735)
Q Consensus       608 L~~L~ls~N~  617 (735)
                      ++.+++++|+
T Consensus       321 l~~l~L~~N~  330 (330)
T 1xku_A          321 RAAVQLGNYK  330 (330)
T ss_dssp             GGGEEC----
T ss_pred             eeEEEecccC
Confidence            7777777774

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=2.5e-30  Score=269.98  Aligned_cols=251  Identities=20%  Similarity=0.257  Sum_probs=213.1

Q ss_pred             ccCcEEECcCCcCCCCCCcccCCCCCCCEEECCCccccCccchhhhhCCCCCCEEEccCCCCCCcCcccccCCCCCCEEE
Q 004704          192 QKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLY  271 (735)
Q Consensus       192 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  271 (735)
                      .+++.++++++.++ .+|..+.  +++++|++++|.++ .++...+..+++|++|++++|.+++..|..|..+++|++|+
T Consensus        31 c~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  106 (330)
T 1xku_A           31 CHLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLY  106 (330)
T ss_dssp             EETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred             CCCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCC-EeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEE
Confidence            37999999999988 6776654  68999999999998 56665668899999999999999988899999999999999


Q ss_pred             ccccccCccccccccCCCCCCEEEeeCCccCCCCCchhhhhcccCcEEEcCCCcCCC--CCCccCCCCCCCCEEEcccCC
Q 004704          272 FENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEG--NVPVQLNNLERLRILDISENR  349 (735)
Q Consensus       272 L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~L~~n~  349 (735)
                      +++|.++ .+|..+.  ++|++|++++|.+++..+..+..++. |+.|++++|.+..  ..+..+..+++|++|++++|.
T Consensus       107 Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~  182 (330)
T 1xku_A          107 LSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQ-MIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN  182 (330)
T ss_dssp             CCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTT-CCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC
T ss_pred             CCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCcc-ccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc
Confidence            9999998 5665554  79999999999999666666777777 9999999999964  677889999999999999999


Q ss_pred             CCccCCCccCCCCccEEEccCCcccccCcccccCCCCCcEEeCCCCcccccCChhhhCCCCccEEEccCCcCCCCCchhh
Q 004704          350 LSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQL  429 (735)
Q Consensus       350 l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  429 (735)
                      ++..+...  .++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|+++ .+|..+
T Consensus       183 l~~l~~~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l  259 (330)
T 1xku_A          183 ITTIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGL  259 (330)
T ss_dssp             CCSCCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTT
T ss_pred             cccCCccc--cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhh
Confidence            98654433  278899999999988888888888888999999999888777778888888999999988888 677788


Q ss_pred             hcCCCCCEEECcCCcCCCCCCchh
Q 004704          430 CQLQKLAMMDLSRNKFSGSIPPCF  453 (735)
Q Consensus       430 ~~l~~L~~L~Ls~N~l~~~~p~~~  453 (735)
                      ..+++|++|++++|++++..+..|
T Consensus       260 ~~l~~L~~L~l~~N~i~~~~~~~f  283 (330)
T 1xku_A          260 ADHKYIQVVYLHNNNISAIGSNDF  283 (330)
T ss_dssp             TTCSSCCEEECCSSCCCCCCTTSS
T ss_pred             ccCCCcCEEECCCCcCCccChhhc
Confidence            888888888888888876555444

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.96  E-value=2.1e-31  Score=301.82  Aligned_cols=397  Identities=12%  Similarity=0.049  Sum_probs=233.0

Q ss_pred             CCCCCcEEECcCCcCcccCcCCcCC-CC-CcCEEEccCCc-CCCcCChhHHHhcccCcEEECcCCcCCCC----CCcccC
Q 004704          141 NNPKLEVLLLKNNSFSGILQLPKAK-HD-FLHHLDISCNN-FRGKLPHNMGVILQKLMYMDISKNCFEGN----IPYSAG  213 (735)
Q Consensus       141 ~l~~L~~L~L~~n~l~~~~~~~~~~-~~-~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~l~  213 (735)
                      .+++|++|+|++|.+++.....+.. ++ +|++|++++|. ++......+...+++|++|++++|.+++.    ++....
T Consensus       110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~  189 (592)
T 3ogk_B          110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ  189 (592)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred             hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence            4555555555555554433322322 22 26666665554 11111111222356666666666665443    222334


Q ss_pred             CCCCCCEEECCCccccCcc---chhhhhCCCCCCEEEccCCCCCCcCcccccCCCCCCEEEccccccC---ccccccccC
Q 004704          214 EMKELSLLDLSRNYFSGGL---SQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFS---GKIKDGLLS  287 (735)
Q Consensus       214 ~l~~L~~L~L~~n~l~~~~---~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~---~~~~~~l~~  287 (735)
                      .+++|++|++++|.+++.-   -..++..+++|++|++++|.+.+ ++..+..+++|++|+++.....   +..+..+..
T Consensus       190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~  268 (592)
T 3ogk_B          190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVF  268 (592)
T ss_dssp             HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCC
T ss_pred             cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhc
Confidence            5566666666666664111   11223456677777777766664 4456666777777777643222   223345566


Q ss_pred             CCCCCEEEeeCCccCCCCCchhhhhcccCcEEEcCCCcCCCCCC-ccCCCCCCCCEEEcccCCCCccCCCcc-CCCCccE
Q 004704          288 STSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVP-VQLNNLERLRILDISENRLSGPIASSL-NLSSVEH  365 (735)
Q Consensus       288 ~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~-~l~~L~~  365 (735)
                      +++|+.|+++++... .+|..+..++. |++|++++|.+++... ..+..+++|++|+++++-..+.++... .+++|++
T Consensus       269 ~~~L~~L~l~~~~~~-~l~~~~~~~~~-L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~  346 (592)
T 3ogk_B          269 PRKLCRLGLSYMGPN-EMPILFPFAAQ-IRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKR  346 (592)
T ss_dssp             CTTCCEEEETTCCTT-TGGGGGGGGGG-CCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCE
T ss_pred             cccccccCccccchh-HHHHHHhhcCC-CcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCE
Confidence            777888877775433 56666666665 8888888877654332 335677888888887332222222222 5777888


Q ss_pred             EEccC-----------CcccccC-cccccCCCCCcEEeCCCCcccccCChhhhC-CCCccEEEcc----CCcCCCC----
Q 004704          366 LSLQK-----------NALNGLI-PGELFRSCKLVTLNLRDNTFSGRIPHQINE-HSNLRFLLLG----GNHLQGP----  424 (735)
Q Consensus       366 L~l~~-----------n~l~~~~-~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~L~----~n~l~~~----  424 (735)
                      |++++           +.+++.. +.....+++|++|+++.|.+++..+..+.. +++|+.|+++    .|.+++.    
T Consensus       347 L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~  426 (592)
T 3ogk_B          347 LRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDN  426 (592)
T ss_dssp             EEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHH
T ss_pred             EEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHH
Confidence            88873           4554332 222345788888888888887766666665 7888888885    5667653    


Q ss_pred             -CchhhhcCCCCCEEECcCCc--CCCCCCchhhcccccccccCCccCCCCCCCcccchhhhcccCCCCCCCccccchhhh
Q 004704          425 -IPDQLCQLQKLAMMDLSRNK--FSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRW  501 (735)
Q Consensus       425 -~~~~~~~l~~L~~L~Ls~N~--l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  501 (735)
                       ++..+..+++|+.|++++|.  +++..+..+.                                               
T Consensus       427 ~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~-----------------------------------------------  459 (592)
T 3ogk_B          427 GVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIG-----------------------------------------------  459 (592)
T ss_dssp             HHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHH-----------------------------------------------
T ss_pred             HHHHHHHhCCCCCEEEEecCCCCccHHHHHHHH-----------------------------------------------
Confidence             33446678888888887543  3322111111                                               


Q ss_pred             hhhhhhhhccccceeEEEEeccccccccCCcccccceEECCCCcccC-CCCccccccccCCeEeCCCCcCccc-Cccccc
Q 004704          502 LSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTG-EIPSDIGQLQAILALNLSNNSLSGS-IPESFS  579 (735)
Q Consensus       502 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~-~p~~~~  579 (735)
                                                   ..+++|+.|++++|++++ .++..+..+++|++|++++|.+++. ++..+.
T Consensus       460 -----------------------------~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~  510 (592)
T 3ogk_B          460 -----------------------------QYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVT  510 (592)
T ss_dssp             -----------------------------HSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHH
T ss_pred             -----------------------------HhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHH
Confidence                                         123567888888888775 3444556778888888888887754 344456


Q ss_pred             CcCCCCEEeCCCCcccccCCccc-cCCCCCCeEEcccC
Q 004704          580 NLKMIESLDISYNKLTGQIPPQL-TALNFLSIFNVSYN  616 (735)
Q Consensus       580 ~l~~L~~LdLs~N~l~~~~p~~l-~~l~~L~~L~ls~N  616 (735)
                      .+++|++|+|++|+++..-...+ ..++.+....+..+
T Consensus       511 ~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~  548 (592)
T 3ogk_B          511 KLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSR  548 (592)
T ss_dssp             HCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred             hcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence            78888888888888876533333 35566666555544

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.96  E-value=2e-31  Score=302.07  Aligned_cols=353  Identities=16%  Similarity=0.059  Sum_probs=227.9

Q ss_pred             eeEEEeeCCC-CCC-CCchhhhCCCCCCEEEccCCcCcccCch---HHHhCCCCCcEEECcCCcCccc----CcCCcCCC
Q 004704           96 LIVLGLTKCN-LNG-SYPDFLLHQYHLKYLDLSHNKLVGNFPT---WLLRNNPKLEVLLLKNNSFSGI----LQLPKAKH  166 (735)
Q Consensus        96 L~~L~L~~n~-l~~-~~~~~l~~l~~L~~L~Ls~n~l~~~~p~---~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~~  166 (735)
                      |++|+|++|. ++. .++....++++|++|+|++|.+++.-..   .+...+++|++|++++|.+++.    .+..+..+
T Consensus       140 L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~  219 (592)
T 3ogk_B          140 LETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNC  219 (592)
T ss_dssp             CCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHC
T ss_pred             CcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhC
Confidence            6666666654 111 1223334677788888888777644222   2334677888888887777632    23334567


Q ss_pred             CCcCEEEccCCcCCCcCChhHHHhcccCcEEECcCCcCC---CCCCcccCCCCCCCEEECCCccccCccchhhhhCCCCC
Q 004704          167 DFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFE---GNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSL  243 (735)
Q Consensus       167 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~---~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L  243 (735)
                      ++|++|++++|.+. .+|..+.. +++|++|+++.....   +..+..+..+++|+.|+++++... .++. ++..+++|
T Consensus       220 ~~L~~L~L~~~~~~-~l~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l~~-~~~~~~~L  295 (592)
T 3ogk_B          220 RSLVSVKVGDFEIL-ELVGFFKA-AANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-EMPI-LFPFAAQI  295 (592)
T ss_dssp             TTCCEEECSSCBGG-GGHHHHHH-CTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-TGGG-GGGGGGGC
T ss_pred             CCCcEEeccCccHH-HHHHHHhh-hhHHHhhcccccccccchHHHHHHhhccccccccCccccchh-HHHH-HHhhcCCC
Confidence            78888888887776 35544444 678888888753322   234456677788888888775432 3443 34567888


Q ss_pred             CEEEccCCCCCCcCc-ccccCCCCCCEEEccccccCccccccccCCCCCCEEEeeC-----------CccCCCCCch-hh
Q 004704          244 ELLDLSNNNFEGQFF-SEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISN-----------NMLSGHIPHW-MG  310 (735)
Q Consensus       244 ~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~-----------n~l~~~~p~~-~~  310 (735)
                      ++|++++|.+++... ..+..+++|++|+++++-..+.++.....+++|++|++++           +.+++..... ..
T Consensus       296 ~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~  375 (592)
T 3ogk_B          296 RKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQ  375 (592)
T ss_dssp             CEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHH
T ss_pred             cEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHh
Confidence            888888888664333 3357788888888883322223333445678888888883           4555332222 23


Q ss_pred             hhcccCcEEEcCCCcCCCCCCccCCC-CCCCCEEEcc----cCCCCccC-----CCcc-CCCCccEEEccCCc--ccccC
Q 004704          311 NFSSELEILSMSKNHLEGNVPVQLNN-LERLRILDIS----ENRLSGPI-----ASSL-NLSSVEHLSLQKNA--LNGLI  377 (735)
Q Consensus       311 ~~~~~L~~L~l~~n~l~~~~~~~l~~-l~~L~~L~L~----~n~l~~~~-----~~~~-~l~~L~~L~l~~n~--l~~~~  377 (735)
                      .++. |++|+++.|.+++..+..+.. +++|+.|+++    .|.+++.+     +... ++++|+.|++++|.  +++..
T Consensus       376 ~~~~-L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~  454 (592)
T 3ogk_B          376 GCQE-LEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLG  454 (592)
T ss_dssp             HCTT-CSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHH
T ss_pred             hCcc-CeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHH
Confidence            3444 888888888887665555544 7788888886    55666532     1122 68889999987654  55544


Q ss_pred             ccccc-CCCCCcEEeCCCCccccc-CChhhhCCCCccEEEccCCcCCCC-CchhhhcCCCCCEEECcCCcCCCCCCchh
Q 004704          378 PGELF-RSCKLVTLNLRDNTFSGR-IPHQINEHSNLRFLLLGGNHLQGP-IPDQLCQLQKLAMMDLSRNKFSGSIPPCF  453 (735)
Q Consensus       378 ~~~~~-~~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~  453 (735)
                      ...+. .+++|++|++++|++++. ++..+..+++|++|++++|.+++. ++..+..+++|+.|++++|++++.....+
T Consensus       455 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l  533 (592)
T 3ogk_B          455 LSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLM  533 (592)
T ss_dssp             HHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGG
T ss_pred             HHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHH
Confidence            44443 478899999999988763 455567788999999999987644 34445678899999999999876543333

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.96  E-value=2.3e-28  Score=252.19  Aligned_cols=250  Identities=21%  Similarity=0.271  Sum_probs=202.1

Q ss_pred             CEEEeeCCccCCCCCchhhhhcccCcEEEcCCCcCCCCCCccCCCCCCCCEEEcccCCCCccC--C-CccCCCCccEEEc
Q 004704          292 QVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPI--A-SSLNLSSVEHLSL  368 (735)
Q Consensus       292 ~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~--~-~~~~l~~L~~L~l  368 (735)
                      +.++.+++.++ .+|..+.   .++++|++++|+++...+..|..+++|++|++++|.++...  + ....+++|++|++
T Consensus        10 ~~l~c~~~~l~-~ip~~~~---~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L   85 (306)
T 2z66_A           10 TEIRCNSKGLT-SVPTGIP---SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL   85 (306)
T ss_dssp             TEEECCSSCCS-SCCSCCC---TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred             CEEEcCCCCcc-cCCCCCC---CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence            46777777776 6665443   34888888888888655556788888888888888887432  2 2237888999999


Q ss_pred             cCCcccccCcccccCCCCCcEEeCCCCcccccCC-hhhhCCCCccEEEccCCcCCCCCchhhhcCCCCCEEECcCCcCCC
Q 004704          369 QKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIP-HQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSG  447 (735)
Q Consensus       369 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  447 (735)
                      ++|.+.+ +|..+..+++|++|++++|++++..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|++++
T Consensus        86 s~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  164 (306)
T 2z66_A           86 SFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE  164 (306)
T ss_dssp             CSCSEEE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGG
T ss_pred             CCCcccc-ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccc
Confidence            9988874 56678889999999999999986554 578889999999999999988888888899999999999998875


Q ss_pred             -CCCchhhcccccccccCCccCCCCCCCcccchhhhcccCCCCCCCccccchhhhhhhhhhhhccccceeEEEEeccccc
Q 004704          448 -SIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYE  526 (735)
Q Consensus       448 -~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  526 (735)
                       ..|..+..                                                                       
T Consensus       165 ~~~~~~~~~-----------------------------------------------------------------------  173 (306)
T 2z66_A          165 NFLPDIFTE-----------------------------------------------------------------------  173 (306)
T ss_dssp             GEECSCCTT-----------------------------------------------------------------------
T ss_pred             ccchhHHhh-----------------------------------------------------------------------
Confidence             34443332                                                                       


Q ss_pred             cccCCcccccceEECCCCcccCCCCccccccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccCCccccCCC
Q 004704          527 IYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALN  606 (735)
Q Consensus       527 ~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~  606 (735)
                            +++|+.|++++|++++..|..++.+++|++|+|++|.+++..+..+..+++|+.|||++|++++..|..+..++
T Consensus       174 ------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~  247 (306)
T 2z66_A          174 ------LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFP  247 (306)
T ss_dssp             ------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCC
T ss_pred             ------CcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhh
Confidence                  36788899999999988888899999999999999999987777899999999999999999999999999885


Q ss_pred             -CCCeEEcccCcCcccCC
Q 004704          607 -FLSIFNVSYNNLSGRTP  623 (735)
Q Consensus       607 -~L~~L~ls~N~l~~~~p  623 (735)
                       +|++|++++|++++.++
T Consensus       248 ~~L~~L~L~~N~~~~~c~  265 (306)
T 2z66_A          248 SSLAFLNLTQNDFACTCE  265 (306)
T ss_dssp             TTCCEEECTTCCEECSGG
T ss_pred             ccCCEEEccCCCeecccC
Confidence             89999999999887554

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.96  E-value=9.6e-29  Score=260.42  Aligned_cols=207  Identities=18%  Similarity=0.182  Sum_probs=126.0

Q ss_pred             CCCCCEEECCCccccCccchhhhhCCCCCCEEEccCCCCCCcCcccccCCCCCCEEEccccccCccccccccCCCCCCEE
Q 004704          215 MKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVL  294 (735)
Q Consensus       215 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L  294 (735)
                      ++.....+.+++.++ .+|..+   .++|++|++++|.+++..+..|.++++|++|++++|.+++..+..+..+++|++|
T Consensus        30 C~~~~~c~~~~~~l~-~iP~~~---~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  105 (353)
T 2z80_A           30 CDRNGICKGSSGSLN-SIPSGL---TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHL  105 (353)
T ss_dssp             ECTTSEEECCSTTCS-SCCTTC---CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred             CCCCeEeeCCCCCcc-cccccc---cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEE
Confidence            444455666777666 566543   2466777777777665555566666666666666666665555556666666666


Q ss_pred             EeeCCccCCCCCch-hhhhcccCcEEEcCCCcCCCCCC-ccCCCCCCCCEEEcccCCCCccCCCccCCCCccEEEccCCc
Q 004704          295 DISNNMLSGHIPHW-MGNFSSELEILSMSKNHLEGNVP-VQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNA  372 (735)
Q Consensus       295 ~l~~n~l~~~~p~~-~~~~~~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~  372 (735)
                      ++++|.+++ +|.. +..++. |++|++++|++++..+ ..+..+++|++|++++|.                      .
T Consensus       106 ~Ls~n~l~~-~~~~~~~~l~~-L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~----------------------~  161 (353)
T 2z80_A          106 DLSYNYLSN-LSSSWFKPLSS-LTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMD----------------------T  161 (353)
T ss_dssp             ECCSSCCSS-CCHHHHTTCTT-CSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESS----------------------S
T ss_pred             ECCCCcCCc-CCHhHhCCCcc-CCEEECCCCCCcccCchhhhccCCCCcEEECCCCc----------------------c
Confidence            666666653 3332 444444 5555555555553222 244444444444444442                      2


Q ss_pred             ccccCcccccCCCCCcEEeCCCCcccccCChhhhCCCCccEEEccCCcCCCCCchhhhcCCCCCEEECcCCcCCCCC
Q 004704          373 LNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSI  449 (735)
Q Consensus       373 l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  449 (735)
                      +.+..+..+..+++|++|++++|++++..|..+..+++|++|++++|.+....+..+..+++|+.|++++|++++..
T Consensus       162 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~  238 (353)
T 2z80_A          162 FTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFH  238 (353)
T ss_dssp             CCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCC
T ss_pred             ccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccccc
Confidence            34444555666677777777777777666777777778888888888776433334455778888888888777543

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.95  E-value=5.8e-28  Score=254.42  Aligned_cols=275  Identities=20%  Similarity=0.191  Sum_probs=161.2

Q ss_pred             CEEEccCCcCCCcCChhHHHhcccCcEEECcCCcCCCCCCcccCCCCCCCEEECCCccccCccchhhhhCCCCCCEEEcc
Q 004704          170 HHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLS  249 (735)
Q Consensus       170 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~  249 (735)
                      ...+.+++.++ .+|..+.   ++|++|++++|.+++..+..+.++++|++|++++|.++ .++...+.++++|++|+++
T Consensus        34 ~~c~~~~~~l~-~iP~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls  108 (353)
T 2z80_A           34 GICKGSSGSLN-SIPSGLT---EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLS  108 (353)
T ss_dssp             SEEECCSTTCS-SCCTTCC---TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECC
T ss_pred             eEeeCCCCCcc-ccccccc---ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccC-ccCHhhcCCCCCCCEEECC
Confidence            33444555554 4454432   25555555555555433334555555555555555554 2333333445555555555


Q ss_pred             CCCCCCcCcccccCCCCCCEEEccccccCcccc-ccccCCCCCCEEEeeCCc-cCCCCCchhhhhcccCcEEEcCCCcCC
Q 004704          250 NNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIK-DGLLSSTSLQVLDISNNM-LSGHIPHWMGNFSSELEILSMSKNHLE  327 (735)
Q Consensus       250 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~~~~L~~L~l~~n~-l~~~~p~~~~~~~~~L~~L~l~~n~l~  327 (735)
                      +|.+++..+..+.++++|++|++++|.+++..+ ..+..+++|++|++++|. +.+..+..+..++. |++|++++|+++
T Consensus       109 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~-L~~L~l~~n~l~  187 (353)
T 2z80_A          109 YNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTF-LEELEIDASDLQ  187 (353)
T ss_dssp             SSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCE-EEEEEEEETTCC
T ss_pred             CCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCC-CCEEECCCCCcC
Confidence            555554444445555555555555555553222 245555566666666552 43333344555544 666666666666


Q ss_pred             CCCCccCCCCCCCCEEEcccCCCCccCCCcc-CCCCccEEEccCCcccccCccccc---CCCCCcEEeCCCCcccc----
Q 004704          328 GNVPVQLNNLERLRILDISENRLSGPIASSL-NLSSVEHLSLQKNALNGLIPGELF---RSCKLVTLNLRDNTFSG----  399 (735)
Q Consensus       328 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~---~~~~L~~L~l~~n~l~~----  399 (735)
                      +..|..+..+++|++|++++|.+.......+ .+++|+.|++++|.+++..+..+.   ....++.++++++.+++    
T Consensus       188 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~  267 (353)
T 2z80_A          188 SYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF  267 (353)
T ss_dssp             EECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHH
T ss_pred             ccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchh
Confidence            5556666666666666666666544333323 456666666666666654433322   34567788888877765    


Q ss_pred             cCChhhhCCCCccEEEccCCcCCCCCchhhhcCCCCCEEECcCCcCCCCCC
Q 004704          400 RIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIP  450 (735)
Q Consensus       400 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p  450 (735)
                      .+|.++..+++|++|++++|+++...+..|..+++|+.|++++|++.+..|
T Consensus       268 ~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          268 QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             HHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             hhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence            467888999999999999999995434446899999999999999987655

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.95  E-value=3.5e-27  Score=257.11  Aligned_cols=250  Identities=20%  Similarity=0.233  Sum_probs=204.1

Q ss_pred             CCEEEeeCCccCCCCCchhhhhcccCcEEEcCCCcCCCCCCccCCCCCCCCEEEcccCCCCccCCCcc-CCCCccEEEcc
Q 004704          291 LQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSL-NLSSVEHLSLQ  369 (735)
Q Consensus       291 L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~-~l~~L~~L~l~  369 (735)
                      ...++.++..++ .+|..+.   .+++.|++++|++++..+..|.++++|++|++++|.+++..+..+ ++++|++|+++
T Consensus        56 ~~~v~c~~~~l~-~iP~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~  131 (452)
T 3zyi_A           56 FSKVVCTRRGLS-EVPQGIP---SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF  131 (452)
T ss_dssp             SCEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CcEEEECCCCcC-ccCCCCC---CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence            456667776666 5665443   348888888888887777888888888888888888887776666 78888888888


Q ss_pred             CCcccccCcccccCCCCCcEEeCCCCcccccCChhhhCCCCccEEEccCC-cCCCCCchhhhcCCCCCEEECcCCcCCCC
Q 004704          370 KNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGN-HLQGPIPDQLCQLQKLAMMDLSRNKFSGS  448 (735)
Q Consensus       370 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~  448 (735)
                      +|.+++..+..+..+++|++|++++|++++..+..|..+++|++|++++| .+....+..|..+++|+.|++++|++++.
T Consensus       132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~  211 (452)
T 3zyi_A          132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM  211 (452)
T ss_dssp             SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC
T ss_pred             CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc
Confidence            88888777777888889999999999988766778888999999999985 44433445688899999999999988742


Q ss_pred             CCchhhcccccccccCCccCCCCCCCcccchhhhcccCCCCCCCccccchhhhhhhhhhhhccccceeEEEEeccccccc
Q 004704          449 IPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIY  528 (735)
Q Consensus       449 ~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  528 (735)
                       |. +                                                                           
T Consensus       212 -~~-~---------------------------------------------------------------------------  214 (452)
T 3zyi_A          212 -PN-L---------------------------------------------------------------------------  214 (452)
T ss_dssp             -CC-C---------------------------------------------------------------------------
T ss_pred             -cc-c---------------------------------------------------------------------------
Confidence             31 1                                                                           


Q ss_pred             cCCcccccceEECCCCcccCCCCccccccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccCCccccCCCCC
Q 004704          529 NGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFL  608 (735)
Q Consensus       529 ~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L  608 (735)
                        ..+++|+.|+|++|++++..|..|..+++|+.|+|++|++++..|..|.++++|+.|||++|++++..+..+..+++|
T Consensus       215 --~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  292 (452)
T 3zyi_A          215 --TPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYL  292 (452)
T ss_dssp             --TTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTC
T ss_pred             --cccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCC
Confidence              123678889999999998889999999999999999999999989999999999999999999998888888999999


Q ss_pred             CeEEcccCcCcccCC
Q 004704          609 SIFNVSYNNLSGRTP  623 (735)
Q Consensus       609 ~~L~ls~N~l~~~~p  623 (735)
                      +.|++++|++.+.+.
T Consensus       293 ~~L~L~~Np~~CdC~  307 (452)
T 3zyi_A          293 VELHLHHNPWNCDCD  307 (452)
T ss_dssp             CEEECCSSCEECSTT
T ss_pred             CEEEccCCCcCCCCC
Confidence            999999999887654

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.95  E-value=4e-27  Score=255.69  Aligned_cols=251  Identities=21%  Similarity=0.267  Sum_probs=219.0

Q ss_pred             CCCEEEeeCCccCCCCCchhhhhcccCcEEEcCCCcCCCCCCccCCCCCCCCEEEcccCCCCccCCCcc-CCCCccEEEc
Q 004704          290 SLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSL-NLSSVEHLSL  368 (735)
Q Consensus       290 ~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~-~l~~L~~L~l  368 (735)
                      ..+.++.++..++ .+|..+.   .+++.|++++|++++..+..|.++++|++|++++|.+++..+..+ ++++|++|++
T Consensus        44 ~~~~v~c~~~~l~-~iP~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L  119 (440)
T 3zyj_A           44 QFSKVICVRKNLR-EVPDGIS---TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLEL  119 (440)
T ss_dssp             TSCEEECCSCCCS-SCCSCCC---TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEEC
T ss_pred             CCCEEEeCCCCcC-cCCCCCC---CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEEC
Confidence            4678888898888 7887654   449999999999998888999999999999999999998777666 8999999999


Q ss_pred             cCCcccccCcccccCCCCCcEEeCCCCcccccCChhhhCCCCccEEEccCCc-CCCCCchhhhcCCCCCEEECcCCcCCC
Q 004704          369 QKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNH-LQGPIPDQLCQLQKLAMMDLSRNKFSG  447 (735)
Q Consensus       369 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~  447 (735)
                      ++|.+++..+..|..+++|++|++++|++++..+..|..+++|++|++++|. +....+..|.++++|+.|++++|+++ 
T Consensus       120 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-  198 (440)
T 3zyj_A          120 FDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-  198 (440)
T ss_dssp             CSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-
T ss_pred             CCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-
Confidence            9999998877789999999999999999997777789999999999999954 44444457899999999999999987 


Q ss_pred             CCCchhhcccccccccCCccCCCCCCCcccchhhhcccCCCCCCCccccchhhhhhhhhhhhccccceeEEEEecccccc
Q 004704          448 SIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEI  527 (735)
Q Consensus       448 ~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  527 (735)
                      .+|. +                                                                          
T Consensus       199 ~~~~-~--------------------------------------------------------------------------  203 (440)
T 3zyj_A          199 EIPN-L--------------------------------------------------------------------------  203 (440)
T ss_dssp             SCCC-C--------------------------------------------------------------------------
T ss_pred             cccc-c--------------------------------------------------------------------------
Confidence            3332 1                                                                          


Q ss_pred             ccCCcccccceEECCCCcccCCCCccccccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccCCccccCCCC
Q 004704          528 YNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNF  607 (735)
Q Consensus       528 ~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~  607 (735)
                         ..+++|+.|+|++|++++..|..|..+++|+.|+|++|++++..|..|.++++|+.|||++|++++..+..+..+++
T Consensus       204 ---~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~  280 (440)
T 3zyj_A          204 ---TPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHH  280 (440)
T ss_dssp             ---TTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTT
T ss_pred             ---CCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccC
Confidence               12467889999999999888999999999999999999999999999999999999999999999888888999999


Q ss_pred             CCeEEcccCcCcccCC
Q 004704          608 LSIFNVSYNNLSGRTP  623 (735)
Q Consensus       608 L~~L~ls~N~l~~~~p  623 (735)
                      |+.|++++|++.+.+.
T Consensus       281 L~~L~L~~Np~~CdC~  296 (440)
T 3zyj_A          281 LERIHLHHNPWNCNCD  296 (440)
T ss_dssp             CCEEECCSSCEECSST
T ss_pred             CCEEEcCCCCccCCCC
Confidence            9999999999987664

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.95  E-value=4.5e-27  Score=255.35  Aligned_cols=246  Identities=25%  Similarity=0.331  Sum_probs=141.6

Q ss_pred             CCEEEccccccCccccccccCCCCCCEEEeeCCccCCCCCchhhhhcccCcEEEcCCCcCCCCCCccCCCCCCCCEEEcc
Q 004704          267 LRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDIS  346 (735)
Q Consensus       267 L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~  346 (735)
                      .+.++..+..++ .+|..+.  ++++.|++++|.+++..+..+..++. |++|++++|.+++..+..|.++++|++|+++
T Consensus        45 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~-L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~  120 (440)
T 3zyj_A           45 FSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRH-LEILQLSRNHIRTIEIGAFNGLANLNTLELF  120 (440)
T ss_dssp             SCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSS-CCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred             CCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCC-CCEEECCCCcCCccChhhccCCccCCEEECC
Confidence            345555555555 4444332  45666666666666444455555554 6666666666665555566666666666666


Q ss_pred             cCCCCccCCCcc-CCCCccEEEccCCcccccCcccccCCCCCcEEeCCCC-cccccCChhhhCCCCccEEEccCCcCCCC
Q 004704          347 ENRLSGPIASSL-NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDN-TFSGRIPHQINEHSNLRFLLLGGNHLQGP  424 (735)
Q Consensus       347 ~n~l~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  424 (735)
                      +|++++..+..+ .+++|++|++++|.+....+..|..+++|+.|++++| .+....+..|..+++|++|++++|.++ .
T Consensus       121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~  199 (440)
T 3zyj_A          121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-E  199 (440)
T ss_dssp             SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-S
T ss_pred             CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-c
Confidence            666665554444 5666666666666666555555666666666666663 333233335556666666666666665 3


Q ss_pred             CchhhhcCCCCCEEECcCCcCCCCCCchhhcccccccccCCccCCCCCCCcccchhhhcccCCCCCCCccccchhhhhhh
Q 004704          425 IPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSA  504 (735)
Q Consensus       425 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  504 (735)
                      +| .+..+++|+.|++++|++++..|..|..+                                                
T Consensus       200 ~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l------------------------------------------------  230 (440)
T 3zyj_A          200 IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGL------------------------------------------------  230 (440)
T ss_dssp             CC-CCTTCSSCCEEECTTSCCCEECTTTTTTC------------------------------------------------
T ss_pred             cc-ccCCCcccCEEECCCCccCccChhhhccC------------------------------------------------
Confidence            33 25556666666666666655444443322                                                


Q ss_pred             hhhhhccccceeEEEEeccccccccCCcccccceEECCCCcccCCCCccccccccCCeEeCCCCcCcccCcccccCcCCC
Q 004704          505 LEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMI  584 (735)
Q Consensus       505 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L  584 (735)
                                                   ++|+.|+|++|++++..|..|..+++|+.|+|++|++++..+..|..+++|
T Consensus       231 -----------------------------~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  281 (440)
T 3zyj_A          231 -----------------------------MHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHL  281 (440)
T ss_dssp             -----------------------------TTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTC
T ss_pred             -----------------------------ccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCC
Confidence                                         345556666666665555566666666666666666665555556666666


Q ss_pred             CEEeCCCCccc
Q 004704          585 ESLDISYNKLT  595 (735)
Q Consensus       585 ~~LdLs~N~l~  595 (735)
                      +.|+|++|.+.
T Consensus       282 ~~L~L~~Np~~  292 (440)
T 3zyj_A          282 ERIHLHHNPWN  292 (440)
T ss_dssp             CEEECCSSCEE
T ss_pred             CEEEcCCCCcc
Confidence            66666666554

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.95  E-value=4.8e-27  Score=256.00  Aligned_cols=252  Identities=23%  Similarity=0.262  Sum_probs=219.6

Q ss_pred             cCcEEEcCCCcCCCCCCccCCCCCCCCEEEcccCCCCccCCCcc-CCCCccEEEccCCcccccCcccccCCCCCcEEeCC
Q 004704          315 ELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSL-NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLR  393 (735)
Q Consensus       315 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~  393 (735)
                      ....++.++..++ .+|..+.  +++++|++++|++++..+..+ .+++|+.|++++|.+++..+..|.++++|++|+++
T Consensus        55 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~  131 (452)
T 3zyi_A           55 QFSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF  131 (452)
T ss_dssp             SSCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence            3678888888888 5666554  689999999999999877777 89999999999999999988999999999999999


Q ss_pred             CCcccccCChhhhCCCCccEEEccCCcCCCCCchhhhcCCCCCEEECcCCcCCCCCCc-hhhcccccccccCCccCCCCC
Q 004704          394 DNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPP-CFANVLSWRVGSDDVLNGSKL  472 (735)
Q Consensus       394 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~l~~~~~~~~~~~~~  472 (735)
                      +|++++..+..+..+++|++|+|++|.+.+..+..|.++++|+.|++++|+..+.++. .+.                  
T Consensus       132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~------------------  193 (452)
T 3zyi_A          132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFE------------------  193 (452)
T ss_dssp             SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTT------------------
T ss_pred             CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhcc------------------
Confidence            9999977777899999999999999999977777899999999999999654333332 222                  


Q ss_pred             CCcccchhhhcccCCCCCCCccccchhhhhhhhhhhhccccceeEEEEeccccccccCCcccccceEECCCCcccCCCCc
Q 004704          473 NSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPS  552 (735)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~  552 (735)
                                                                                 .+++|+.|+|++|++++ +| 
T Consensus       194 -----------------------------------------------------------~l~~L~~L~L~~n~l~~-~~-  212 (452)
T 3zyi_A          194 -----------------------------------------------------------GLFNLKYLNLGMCNIKD-MP-  212 (452)
T ss_dssp             -----------------------------------------------------------TCTTCCEEECTTSCCSS-CC-
T ss_pred             -----------------------------------------------------------CCCCCCEEECCCCcccc-cc-
Confidence                                                                       24678999999999994 55 


Q ss_pred             cccccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccCCccccCCCCCCeEEcccCcCcccCCCC-CCCCcc
Q 004704          553 DIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPDK-GQFATF  631 (735)
Q Consensus       553 ~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~-~~~~~~  631 (735)
                      .+..+++|+.|+|++|.+++..|..|.++++|+.|+|++|++++..|..+..+++|+.|++++|++++..+.. ..+..+
T Consensus       213 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  292 (452)
T 3zyi_A          213 NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYL  292 (452)
T ss_dssp             CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTC
T ss_pred             cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCC
Confidence            5889999999999999999999999999999999999999999999999999999999999999999777653 456677


Q ss_pred             CCcccCCCCCCCCcccc
Q 004704          632 DESSYRGNPSLCAWLIQ  648 (735)
Q Consensus       632 ~~~~~~gN~~lc~~~~~  648 (735)
                      ....+.+||+.|+|.+.
T Consensus       293 ~~L~L~~Np~~CdC~~~  309 (452)
T 3zyi_A          293 VELHLHHNPWNCDCDIL  309 (452)
T ss_dssp             CEEECCSSCEECSTTTH
T ss_pred             CEEEccCCCcCCCCCch
Confidence            88889999999998643

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.95  E-value=1.5e-27  Score=243.24  Aligned_cols=89  Identities=20%  Similarity=0.213  Sum_probs=48.3

Q ss_pred             ccceEECCCCcccCCCCccccccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccCCccccCCCCCCeEEcc
Q 004704          535 RVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVS  614 (735)
Q Consensus       535 ~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls  614 (735)
                      +|+.|++++|++++..+..+..+++|+.|++++|.+++..|..|+++++|+.|++++|++++..+..+..+++|++|+++
T Consensus       154 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  233 (285)
T 1ozn_A          154 NLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLN  233 (285)
T ss_dssp             TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECC
T ss_pred             CccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEecc
Confidence            34445555555553333445555555555555555555555555555555555555555555444445555555555555


Q ss_pred             cCcCcccCC
Q 004704          615 YNNLSGRTP  623 (735)
Q Consensus       615 ~N~l~~~~p  623 (735)
                      +|++++.++
T Consensus       234 ~N~~~c~~~  242 (285)
T 1ozn_A          234 DNPWVCDCR  242 (285)
T ss_dssp             SSCEECSGG
T ss_pred             CCCccCCCC
Confidence            555555444

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.95  E-value=3.3e-27  Score=245.09  Aligned_cols=235  Identities=19%  Similarity=0.243  Sum_probs=172.9

Q ss_pred             CCCCCEEEeeCCccCCCCCchhhhhcccCcEEEcCCCcCCCCCCccCCCCCCCCEEEcccCCCCccCCCccCCCCccEEE
Q 004704          288 STSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLS  367 (735)
Q Consensus       288 ~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~  367 (735)
                      .+.++.|++++|.++ .+|..++.++. |++|++++|.++ .+|..+..+++|++|++++|.++..+.....+++|++|+
T Consensus        80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~-L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~  156 (328)
T 4fcg_A           80 QPGRVALELRSVPLP-QFPDQAFRLSH-LQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELS  156 (328)
T ss_dssp             STTCCEEEEESSCCS-SCCSCGGGGTT-CSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEE
T ss_pred             ccceeEEEccCCCch-hcChhhhhCCC-CCEEECCCCCcc-chhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEE
Confidence            356777777777776 66776776665 777777777777 666666667777777777766663222222555566666


Q ss_pred             ccCCcccccCcccccCCCCCcEEeCCCCcccccCChhhhCCCCccEEEccCCcCCCCCchhhhcCCCCCEEECcCCcCCC
Q 004704          368 LQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSG  447 (735)
Q Consensus       368 l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  447 (735)
                      +++|.+.+.+|..+..      .         ..+..+..+++|++|++++|.++ .+|..+..+++|+.|++++|++++
T Consensus       157 L~~n~~~~~~p~~~~~------~---------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~  220 (328)
T 4fcg_A          157 IRACPELTELPEPLAS------T---------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA  220 (328)
T ss_dssp             EEEETTCCCCCSCSEE------E---------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC
T ss_pred             CCCCCCccccChhHhh------c---------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc
Confidence            6555555555443322      0         11122445788888888888888 677788888888888888888874


Q ss_pred             CCCchhhcccccccccCCccCCCCCCCcccchhhhcccCCCCCCCccccchhhhhhhhhhhhccccceeEEEEecccccc
Q 004704          448 SIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEI  527 (735)
Q Consensus       448 ~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  527 (735)
                       +|..+..                                                                        
T Consensus       221 -l~~~l~~------------------------------------------------------------------------  227 (328)
T 4fcg_A          221 -LGPAIHH------------------------------------------------------------------------  227 (328)
T ss_dssp             -CCGGGGG------------------------------------------------------------------------
T ss_pred             -Cchhhcc------------------------------------------------------------------------
Confidence             4444433                                                                        


Q ss_pred             ccCCcccccceEECCCCcccCCCCccccccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccCCccccCCCC
Q 004704          528 YNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNF  607 (735)
Q Consensus       528 ~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~  607 (735)
                           +++|+.|++++|++.+.+|..++.+++|+.|+|++|.+.+.+|..++++++|++|||++|++.+.+|..+..+++
T Consensus       228 -----l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~  302 (328)
T 4fcg_A          228 -----LPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPA  302 (328)
T ss_dssp             -----CTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCT
T ss_pred             -----CCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccC
Confidence                 256778889988888888988999999999999999998899999999999999999999999999999999999


Q ss_pred             CCeEEcccCcCc
Q 004704          608 LSIFNVSYNNLS  619 (735)
Q Consensus       608 L~~L~ls~N~l~  619 (735)
                      |+.++++.|.+.
T Consensus       303 L~~l~l~~~~~~  314 (328)
T 4fcg_A          303 NCIILVPPHLQA  314 (328)
T ss_dssp             TCEEECCGGGSC
T ss_pred             ceEEeCCHHHHH
Confidence            999999877654

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.95  E-value=1.6e-27  Score=243.05  Aligned_cols=252  Identities=21%  Similarity=0.250  Sum_probs=202.1

Q ss_pred             CCEEEeeCCccCCCCCchhhhhcccCcEEEcCCCcCCCCCCccCCCCCCCCEEEcccCCCCccCCCcc-CCCCccEEEcc
Q 004704          291 LQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSL-NLSSVEHLSLQ  369 (735)
Q Consensus       291 L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~-~l~~L~~L~l~  369 (735)
                      -++++.+++.++ .+|..+   +.++++|++++|.+++..+..|..+++|++|++++|.+++..+..+ .+++|++|+++
T Consensus        13 ~~~~~c~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   88 (285)
T 1ozn_A           13 KVTTSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLS   88 (285)
T ss_dssp             SCEEECCSSCCS-SCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CeEEEcCcCCcc-cCCcCC---CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCC
Confidence            367888888887 667643   3349999999999987777888899999999999999888766666 78899999999


Q ss_pred             CCc-ccccCcccccCCCCCcEEeCCCCcccccCChhhhCCCCccEEEccCCcCCCCCchhhhcCCCCCEEECcCCcCCCC
Q 004704          370 KNA-LNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGS  448 (735)
Q Consensus       370 ~n~-l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~  448 (735)
                      +|. +....+..+..+++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|++++.
T Consensus        89 ~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  168 (285)
T 1ozn_A           89 DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSV  168 (285)
T ss_dssp             SCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEE
T ss_pred             CCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccccc
Confidence            997 7777688888899999999999999877788888899999999999999877777788899999999999988754


Q ss_pred             CCchhhcccccccccCCccCCCCCCCcccchhhhcccCCCCCCCccccchhhhhhhhhhhhccccceeEEEEeccccccc
Q 004704          449 IPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIY  528 (735)
Q Consensus       449 ~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  528 (735)
                      .+..+..                                                                         
T Consensus       169 ~~~~~~~-------------------------------------------------------------------------  175 (285)
T 1ozn_A          169 PERAFRG-------------------------------------------------------------------------  175 (285)
T ss_dssp             CTTTTTT-------------------------------------------------------------------------
T ss_pred             CHHHhcC-------------------------------------------------------------------------
Confidence            4443433                                                                         


Q ss_pred             cCCcccccceEECCCCcccCCCCccccccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccCCccccCCCCC
Q 004704          529 NGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFL  608 (735)
Q Consensus       529 ~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L  608 (735)
                          +++|+.|++++|++++..|..++.+++|+.|++++|.+++..+..+..+++|+.|++++|.+....+.. .-...+
T Consensus       176 ----l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l  250 (285)
T 1ozn_A          176 ----LHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWL  250 (285)
T ss_dssp             ----CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHH
T ss_pred             ----ccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHHH
Confidence                356788999999998888888999999999999999999877777899999999999999888644321 112234


Q ss_pred             CeEEcccCcCcccCCC
Q 004704          609 SIFNVSYNNLSGRTPD  624 (735)
Q Consensus       609 ~~L~ls~N~l~~~~p~  624 (735)
                      +.+..+.|.+.+..|.
T Consensus       251 ~~~~~~~~~~~c~~p~  266 (285)
T 1ozn_A          251 QKFRGSSSEVPCSLPQ  266 (285)
T ss_dssp             HHCCSEECCCBEEESG
T ss_pred             HhcccccCccccCCch
Confidence            4555677788777775

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.95  E-value=5.4e-27  Score=243.52  Aligned_cols=236  Identities=22%  Similarity=0.254  Sum_probs=206.0

Q ss_pred             CCCCCCEEEccccccCccccccccCCCCCCEEEeeCCccCCCCCchhhhhcccCcEEEcCCCcCCCCCCccCCCCCCCCE
Q 004704          263 NLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRI  342 (735)
Q Consensus       263 ~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~  342 (735)
                      ..++++.|++++|.++ .+|..+..+++|++|++++|.++ .+|..++.++. |++|++++|.++ .+|..+..+++|++
T Consensus        79 ~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~-L~~L~Ls~n~l~-~lp~~l~~l~~L~~  154 (328)
T 4fcg_A           79 TQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAG-LETLTLARNPLR-ALPASIASLNRLRE  154 (328)
T ss_dssp             TSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTT-CSEEEEESCCCC-CCCGGGGGCTTCCE
T ss_pred             cccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCC-CCEEECCCCccc-cCcHHHhcCcCCCE
Confidence            3578999999999998 78888889999999999999999 89999999987 999999999999 78999999999999


Q ss_pred             EEcccCCCCccCCCccCCCCccEEEccCCcccccCcccccCCCCCcEEeCCCCcccccCChhhhCCCCccEEEccCCcCC
Q 004704          343 LDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQ  422 (735)
Q Consensus       343 L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  422 (735)
                      |++++|++.+.++..+.-     .         ..++.+..+++|++|++++|+++ .+|..++.+++|++|++++|.++
T Consensus       155 L~L~~n~~~~~~p~~~~~-----~---------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~  219 (328)
T 4fcg_A          155 LSIRACPELTELPEPLAS-----T---------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS  219 (328)
T ss_dssp             EEEEEETTCCCCCSCSEE-----E---------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC
T ss_pred             EECCCCCCccccChhHhh-----c---------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC
Confidence            999999888777664411     1         12345677888999999999988 78888999999999999999998


Q ss_pred             CCCchhhhcCCCCCEEECcCCcCCCCCCchhhcccccccccCCccCCCCCCCcccchhhhcccCCCCCCCccccchhhhh
Q 004704          423 GPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWL  502 (735)
Q Consensus       423 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  502 (735)
                      + +|..+..+++|+.|++++|++.+.+|..+..+                                              
T Consensus       220 ~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l----------------------------------------------  252 (328)
T 4fcg_A          220 A-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGR----------------------------------------------  252 (328)
T ss_dssp             C-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCC----------------------------------------------
T ss_pred             c-CchhhccCCCCCEEECcCCcchhhhHHHhcCC----------------------------------------------
Confidence            5 66678999999999999999988888766543                                              


Q ss_pred             hhhhhhhccccceeEEEEeccccccccCCcccccceEECCCCcccCCCCccccccccCCeEeCCCCcCcccCcccccCcC
Q 004704          503 SALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLK  582 (735)
Q Consensus       503 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~  582 (735)
                                                     ++|+.|++++|++.+.+|..++.+++|+.|+|++|.+.+.+|..+++++
T Consensus       253 -------------------------------~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~  301 (328)
T 4fcg_A          253 -------------------------------APLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLP  301 (328)
T ss_dssp             -------------------------------CCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSC
T ss_pred             -------------------------------CCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhcc
Confidence                                           5788899999999999999999999999999999999999999999999


Q ss_pred             CCCEEeCCCCccc
Q 004704          583 MIESLDISYNKLT  595 (735)
Q Consensus       583 ~L~~LdLs~N~l~  595 (735)
                      +|+.+++..|.+.
T Consensus       302 ~L~~l~l~~~~~~  314 (328)
T 4fcg_A          302 ANCIILVPPHLQA  314 (328)
T ss_dssp             TTCEEECCGGGSC
T ss_pred             CceEEeCCHHHHH
Confidence            9999999988766

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.95  E-value=3.8e-27  Score=243.01  Aligned_cols=279  Identities=23%  Similarity=0.254  Sum_probs=183.3

Q ss_pred             CEEEccCCcCCCcCChhHHHhcccCcEEECcCCcCCCCCCcccCCCCCCCEEECCCccccC--ccchhhhhCCCCCCEEE
Q 004704          170 HHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSG--GLSQSVVTGCFSLELLD  247 (735)
Q Consensus       170 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~--~~~~~~~~~l~~L~~L~  247 (735)
                      +.++.+++.++ .+|..+.   ++|++|++++|.++...+..+.++++|++|++++|.++.  ..+..+ ..+++|++|+
T Consensus        10 ~~l~c~~~~l~-~ip~~~~---~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-~~~~~L~~L~   84 (306)
T 2z66_A           10 TEIRCNSKGLT-SVPTGIP---SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSD-FGTTSLKYLD   84 (306)
T ss_dssp             TEEECCSSCCS-SCCSCCC---TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHH-HSCSCCCEEE
T ss_pred             CEEEcCCCCcc-cCCCCCC---CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCccccc-ccccccCEEE
Confidence            46677777776 6666543   477788888887774333346777888888888887762  123443 3577888888


Q ss_pred             ccCCCCCCcCcccccCCCCCCEEEccccccCcccc-ccccCCCCCCEEEeeCCccCCCCCchhhhhcccCcEEEcCCCcC
Q 004704          248 LSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIK-DGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHL  326 (735)
Q Consensus       248 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l  326 (735)
                      +++|.+.. ++..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..+..+..++. |++|++++|.+
T Consensus        85 Ls~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~l~~n~l  162 (306)
T 2z66_A           85 LSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS-LEVLKMAGNSF  162 (306)
T ss_dssp             CCSCSEEE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTT-CCEEECTTCEE
T ss_pred             CCCCcccc-ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcC-CCEEECCCCcc
Confidence            88887763 55567777888888888887775443 45677777777777777777666666666665 77777777777


Q ss_pred             CC-CCCccCCCCCCCCEEEcccCCCCccCCCcc-CCCCccEEEccCCcccccCcccccCCCCCcEEeCCCCcccccCChh
Q 004704          327 EG-NVPVQLNNLERLRILDISENRLSGPIASSL-NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQ  404 (735)
Q Consensus       327 ~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~  404 (735)
                      .+ ..|..+..+++|++|++++|++++..+..+ .+++|++|++++|.+++..+..+..+++|+.|++++|++++..|..
T Consensus       163 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  242 (306)
T 2z66_A          163 QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE  242 (306)
T ss_dssp             GGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSS
T ss_pred             ccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHH
Confidence            65 466677777777777777777776655544 6677777777777776665556666777777777777777666666


Q ss_pred             hhCCC-CccEEEccCCcCCCCCc--hhhhcCCCCCEEECcCCcCCCCCCchhhc
Q 004704          405 INEHS-NLRFLLLGGNHLQGPIP--DQLCQLQKLAMMDLSRNKFSGSIPPCFAN  455 (735)
Q Consensus       405 ~~~l~-~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~  455 (735)
                      +..++ +|++|++++|++.+..+  .....+...+.+.+..+.+....|..+.+
T Consensus       243 ~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~~g  296 (306)
T 2z66_A          243 LQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQG  296 (306)
T ss_dssp             CCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGGGTT
T ss_pred             HHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchhhCC
Confidence            66663 67777777777765321  11122223333444555555555555544

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.95  E-value=1.1e-29  Score=287.90  Aligned_cols=425  Identities=14%  Similarity=0.072  Sum_probs=253.7

Q ss_pred             hhhCCCCCCEEEccCCcCcccC---c-----------hHHHhCCCCCcEEECcCCcCcccCcCCcC-CCCCcCEEEccCC
Q 004704          113 FLLHQYHLKYLDLSHNKLVGNF---P-----------TWLLRNNPKLEVLLLKNNSFSGILQLPKA-KHDFLHHLDISCN  177 (735)
Q Consensus       113 ~l~~l~~L~~L~Ls~n~l~~~~---p-----------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~~L~~L~Ls~n  177 (735)
                      .+..+++|++|+++++.....+   |           ..+...+++|++|++++|.+++.....+. .+++|++|++++|
T Consensus        61 ~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~  140 (594)
T 2p1m_B           61 VIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSC  140 (594)
T ss_dssp             HHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESC
T ss_pred             HHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCc
Confidence            3455666666666665421111   0           12334667777777777776655444443 4677777777777


Q ss_pred             -cCCCcCChhHHHhcccCcEEECcCCcCCCCCCccc----CCCCCCCEEECCCcc--ccCccchhhhhCCCCCCEEEccC
Q 004704          178 -NFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSA----GEMKELSLLDLSRNY--FSGGLSQSVVTGCFSLELLDLSN  250 (735)
Q Consensus       178 -~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l----~~l~~L~~L~L~~n~--l~~~~~~~~~~~l~~L~~L~L~~  250 (735)
                       .+++.....+...+++|++|++++|.+++..+..+    ..+++|++|++++|.  +.......+...+++|++|++++
T Consensus       141 ~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~  220 (594)
T 2p1m_B          141 EGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNR  220 (594)
T ss_dssp             EEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCT
T ss_pred             CCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCC
Confidence             44422233444447788888888887665433333    366788888888886  32222223344578889999888


Q ss_pred             CCCCCcCcccccCCCCCCEEEcccc-------ccCccccccccCCCCCCEE-EeeCCccCCCCCchhhhhcccCcEEEcC
Q 004704          251 NNFEGQFFSEYMNLTRLRHLYFENN-------NFSGKIKDGLLSSTSLQVL-DISNNMLSGHIPHWMGNFSSELEILSMS  322 (735)
Q Consensus       251 n~l~~~~~~~~~~l~~L~~L~L~~n-------~l~~~~~~~l~~~~~L~~L-~l~~n~l~~~~p~~~~~~~~~L~~L~l~  322 (735)
                      |...+.++..+..+++|+.|++..+       .+. .++..+..+++|+.| .+.+... +.++..+..++. |++|+++
T Consensus       221 ~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~l~~~l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~-L~~L~L~  297 (594)
T 2p1m_B          221 AVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYS-GLSVALSGCKELRCLSGFWDAVP-AYLPAVYSVCSR-LTTLNLS  297 (594)
T ss_dssp             TSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHH-HHHHHHHTCTTCCEEECCBTCCG-GGGGGGHHHHTT-CCEEECT
T ss_pred             CCcHHHHHHHHhcCCcceEcccccccCccchhhHH-HHHHHHhcCCCcccccCCcccch-hhHHHHHHhhCC-CCEEEcc
Confidence            8333336667778888888885544       333 244467888888888 3433322 245555555665 9999999


Q ss_pred             CCcCCCCC-CccCCCCCCCCEEEcccCCCCcc-CCCcc-CCCCccEEEccC---------CcccccCccccc-CCCCCcE
Q 004704          323 KNHLEGNV-PVQLNNLERLRILDISENRLSGP-IASSL-NLSSVEHLSLQK---------NALNGLIPGELF-RSCKLVT  389 (735)
Q Consensus       323 ~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~-~~~~~-~l~~L~~L~l~~---------n~l~~~~~~~~~-~~~~L~~  389 (735)
                      +|.+++.. ...+..+++|++|++++| +... .+... .+++|+.|++.+         +.+++.....+. .+++|+.
T Consensus       298 ~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~  376 (594)
T 2p1m_B          298 YATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLES  376 (594)
T ss_dssp             TCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCE
T ss_pred             CCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHH
Confidence            88866432 233567788889988887 3321 11122 477888888843         344432222222 3677888


Q ss_pred             EeCCCCcccccCChhhh-CCCCccEEEcc--C----CcCCCC-----CchhhhcCCCCCEEECcCCcCCCCCCchhhccc
Q 004704          390 LNLRDNTFSGRIPHQIN-EHSNLRFLLLG--G----NHLQGP-----IPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVL  457 (735)
Q Consensus       390 L~l~~n~l~~~~~~~~~-~l~~L~~L~L~--~----n~l~~~-----~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~  457 (735)
                      |+++.|.+++.....+. .+++|+.|+++  +    +.+++.     ++..+..+++|+.|++++ .+++..+..+..  
T Consensus       377 L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~--  453 (594)
T 2p1m_B          377 VLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGT--  453 (594)
T ss_dssp             EEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHH--
T ss_pred             HHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHH--
Confidence            87777777765555554 47778888887  3    444421     122256677777777765 443221111111  


Q ss_pred             ccccccCCccCCCCCCCcccchhhhcccCCCCCCCccccchhhhhhhhhhhhccccceeEEEEeccccccccCCcccccc
Q 004704          458 SWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVT  537 (735)
Q Consensus       458 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~  537 (735)
                                                                                                .+++|+
T Consensus       454 --------------------------------------------------------------------------~~~~L~  459 (594)
T 2p1m_B          454 --------------------------------------------------------------------------YAKKME  459 (594)
T ss_dssp             --------------------------------------------------------------------------HCTTCC
T ss_pred             --------------------------------------------------------------------------hchhcc
Confidence                                                                                      125677


Q ss_pred             eEECCCCcccCCCCccc-cccccCCeEeCCCCcCcccCcc-cccCcCCCCEEeCCCCcccccCCccc-cCCCCCCeEEcc
Q 004704          538 GLDLSCNQLTGEIPSDI-GQLQAILALNLSNNSLSGSIPE-SFSNLKMIESLDISYNKLTGQIPPQL-TALNFLSIFNVS  614 (735)
Q Consensus       538 ~LdLs~N~l~~~~p~~l-~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~LdLs~N~l~~~~p~~l-~~l~~L~~L~ls  614 (735)
                      .|+|++|.+++..+..+ ..+++|++|+|++|.+++..+. ....+++|+.|++++|+++......+ ..++.|+...+.
T Consensus       460 ~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~  539 (594)
T 2p1m_B          460 MLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVID  539 (594)
T ss_dssp             EEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEEC
T ss_pred             EeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEec
Confidence            78888777765444444 5577788888888877654443 34457778888888877754433334 445666665555


Q ss_pred             cCcC
Q 004704          615 YNNL  618 (735)
Q Consensus       615 ~N~l  618 (735)
                      .+.-
T Consensus       540 ~~~~  543 (594)
T 2p1m_B          540 ERGA  543 (594)
T ss_dssp             SSSC
T ss_pred             CCCc
Confidence            5443

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.94  E-value=1.9e-28  Score=253.74  Aligned_cols=262  Identities=20%  Similarity=0.220  Sum_probs=178.7

Q ss_pred             EccccccCccccccccCCCCCCEEEeeCCccCCCCCchhhhhcccCcEEEcCCCcCCCCCCccCCCCCCCCEEEcccCCC
Q 004704          271 YFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRL  350 (735)
Q Consensus       271 ~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l  350 (735)
                      +++.+.+.......+..+++|++|++++|.+++..|..+..++. |+.|++++|++++..+  +..+++|++|++++|++
T Consensus        16 ~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l   92 (317)
T 3o53_A           16 KVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTK-LELLNLSSNVLYETLD--LESLSTLRTLDLNNNYV   92 (317)
T ss_dssp             SCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTT-CCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEE
T ss_pred             eccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCc-CCEEECCCCcCCcchh--hhhcCCCCEEECcCCcc
Confidence            33444443333333344455666666666665444445555554 6666666666654333  56666666666666666


Q ss_pred             CccCCCccCCCCccEEEccCCcccccCcccccCCCCCcEEeCCCCcccccCChhhhCCCCccEEEccCCcCCCCCchhh-
Q 004704          351 SGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQL-  429 (735)
Q Consensus       351 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-  429 (735)
                      ++..    ..++|+.|++++|.+++..+..   +++|++|++++|++++..+..+..+++|++|++++|.+++..+..+ 
T Consensus        93 ~~l~----~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~  165 (317)
T 3o53_A           93 QELL----VGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA  165 (317)
T ss_dssp             EEEE----ECTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGG
T ss_pred             cccc----CCCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHh
Confidence            5433    2366777777777776654432   4678888888888887667777778888888888888887666665 


Q ss_pred             hcCCCCCEEECcCCcCCCCCCchhhcccccccccCCccCCCCCCCcccchhhhcccCCCCCCCccccchhhhhhhhhhhh
Q 004704          430 CQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRA  509 (735)
Q Consensus       430 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  509 (735)
                      ..+++|+.|++++|++++. |..                                                         
T Consensus       166 ~~l~~L~~L~L~~N~l~~~-~~~---------------------------------------------------------  187 (317)
T 3o53_A          166 ASSDTLEHLNLQYNFIYDV-KGQ---------------------------------------------------------  187 (317)
T ss_dssp             GGTTTCCEEECTTSCCCEE-ECC---------------------------------------------------------
T ss_pred             hccCcCCEEECCCCcCccc-ccc---------------------------------------------------------
Confidence            3678888888888887632 110                                                         


Q ss_pred             ccccceeEEEEeccccccccCCcccccceEECCCCcccCCCCccccccccCCeEeCCCCcCcccCcccccCcCCCCEEeC
Q 004704          510 AIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDI  589 (735)
Q Consensus       510 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdL  589 (735)
                                           ..+++|+.|+|++|++++ +|..+..+++|+.|+|++|+++ .+|..+..+++|+.|++
T Consensus       188 ---------------------~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l  244 (317)
T 3o53_A          188 ---------------------VVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDL  244 (317)
T ss_dssp             ---------------------CCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEEC
T ss_pred             ---------------------cccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEc
Confidence                                 113677888888888884 5556888888999999999888 46777888889999999


Q ss_pred             CCCccc-ccCCccccCCCCCCeEEcc-cCcCcccCC
Q 004704          590 SYNKLT-GQIPPQLTALNFLSIFNVS-YNNLSGRTP  623 (735)
Q Consensus       590 s~N~l~-~~~p~~l~~l~~L~~L~ls-~N~l~~~~p  623 (735)
                      ++|+++ +.+|..+..++.|+.++++ .+.++|..|
T Consensus       245 ~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~  280 (317)
T 3o53_A          245 RGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNE  280 (317)
T ss_dssp             TTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSS
T ss_pred             cCCCccCcCHHHHHhccccceEEECCCchhccCCch
Confidence            999888 7788888888888888888 445665544

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.94  E-value=4e-28  Score=250.66  Aligned_cols=205  Identities=19%  Similarity=0.228  Sum_probs=119.5

Q ss_pred             CCCCCCEEEcccCCCCccCCCc---cCCCCccEEEccCCcccccCcccccCC-----CCCcEEeCCCCcccccCChhhhC
Q 004704          336 NLERLRILDISENRLSGPIASS---LNLSSVEHLSLQKNALNGLIPGELFRS-----CKLVTLNLRDNTFSGRIPHQINE  407 (735)
Q Consensus       336 ~l~~L~~L~L~~n~l~~~~~~~---~~l~~L~~L~l~~n~l~~~~~~~~~~~-----~~L~~L~l~~n~l~~~~~~~~~~  407 (735)
                      ++++|++|++++|++++..+..   ..+++|++|++++|.+++. |..+..+     ++|++|++++|++++..|..++.
T Consensus        93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~  171 (312)
T 1wwl_A           93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV  171 (312)
T ss_dssp             TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred             CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence            3445555555555554433332   1445555555555555544 4444443     56666666666666555566666


Q ss_pred             CCCccEEEccCCcCCCC--Cchhh--hcCCCCCEEECcCCcCCCCCCchhhcccccccccCCccCCCCCCCcccchhhhc
Q 004704          408 HSNLRFLLLGGNHLQGP--IPDQL--CQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEF  483 (735)
Q Consensus       408 l~~L~~L~L~~n~l~~~--~~~~~--~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~  483 (735)
                      +++|++|++++|++.+.  .+..+  ..+++|++|++++|++++. +.....+                           
T Consensus       172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~---------------------------  223 (312)
T 1wwl_A          172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETP-SGVCSAL---------------------------  223 (312)
T ss_dssp             CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCH-HHHHHHH---------------------------
T ss_pred             CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcch-HHHHHHH---------------------------
Confidence            66666666666665543  22233  5666677777777666521 1100000                           


Q ss_pred             ccCCCCCCCccccchhhhhhhhhhhhccccceeEEEEeccccccccCCcccccceEECCCCcccCCCC-ccccccccCCe
Q 004704          484 GSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIP-SDIGQLQAILA  562 (735)
Q Consensus       484 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p-~~l~~l~~L~~  562 (735)
                                                                    ...+++|+.||+++|++++.+| ..+..+++|++
T Consensus       224 ----------------------------------------------~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~  257 (312)
T 1wwl_A          224 ----------------------------------------------AAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNS  257 (312)
T ss_dssp             ----------------------------------------------HHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCE
T ss_pred             ----------------------------------------------HhcCCCCCEEECCCCcCCcccchhhhhhcCCCCE
Confidence                                                          0012456667777777776554 34555677777


Q ss_pred             EeCCCCcCcccCcccccCcCCCCEEeCCCCcccccCCccccCCCCCCeEEcccCcCcc
Q 004704          563 LNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSG  620 (735)
Q Consensus       563 L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~  620 (735)
                      |+|++|+++ .+|..+.  ++|++|||++|++++. |. +..+++|++|++++|++++
T Consensus       258 L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          258 LNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             EECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred             EECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence            777777777 5666655  7777777777777755 55 7777777777777777764

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.94  E-value=3e-25  Score=247.63  Aligned_cols=80  Identities=33%  Similarity=0.348  Sum_probs=43.8

Q ss_pred             ccceEECCCCcccCCCCccccccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccCCccccCCCCCCeEEcc
Q 004704          535 RVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVS  614 (735)
Q Consensus       535 ~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls  614 (735)
                      +|+.|++++|++++ +|   ..+++|+.|+|++|.|+ .+|.   .+++|+.|+|++|+++ .+|..+..+++|+.|+++
T Consensus       222 ~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~  292 (622)
T 3g06_A          222 GLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLE  292 (622)
T ss_dssp             TCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECC
T ss_pred             CCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEec
Confidence            34555555555553 44   23355555666666555 3333   4455566666666655 455555556666666666


Q ss_pred             cCcCcccCC
Q 004704          615 YNNLSGRTP  623 (735)
Q Consensus       615 ~N~l~~~~p  623 (735)
                      +|++++.+|
T Consensus       293 ~N~l~~~~~  301 (622)
T 3g06_A          293 GNPLSERTL  301 (622)
T ss_dssp             SCCCCHHHH
T ss_pred             CCCCCCcCH
Confidence            666555544

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.94  E-value=2.5e-29  Score=284.99  Aligned_cols=234  Identities=15%  Similarity=0.102  Sum_probs=115.6

Q ss_pred             cccCCCCCCCEEeCCCCcCCC---Cc------------chhhhCCCCCCEEeCCCCcccccCChhhhhcCCCCCeeeccc
Q 004704           14 TCLKNLTRLKILDISSNQLNG---SL------------PSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLST   78 (735)
Q Consensus        14 ~~~~~l~~L~~L~Ls~n~i~~---~~------------p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~   78 (735)
                      ..+.++++|++|+|+++....   ..            +.....+++|++|++++|.+++..+......+++|++|++++
T Consensus        60 ~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~  139 (594)
T 2p1m_B           60 TVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSS  139 (594)
T ss_dssp             HHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEES
T ss_pred             HHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCC
Confidence            345567778888887764211   11            122346777777777777766544422223577777777776


Q ss_pred             ccccccc-cCCCCCCCCCeeEEEeeCCCCCCCCchhhh----CCCCCCEEEccCCc--CcccCchHHHhCCCCCcEEECc
Q 004704           79 RNNTLHV-KTENWLPTSQLIVLGLTKCNLNGSYPDFLL----HQYHLKYLDLSHNK--LVGNFPTWLLRNNPKLEVLLLK  151 (735)
Q Consensus        79 ~~~~~~~-~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~----~l~~L~~L~Ls~n~--l~~~~p~~~~~~l~~L~~L~L~  151 (735)
                      |...... .......+++|++|++++|.+++..+..+.    .+++|++|++++|.  +.......+...+++|++|+++
T Consensus       140 ~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~  219 (594)
T 2p1m_B          140 CEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLN  219 (594)
T ss_dssp             CEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECC
T ss_pred             cCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecC
Confidence            6322221 111122456667777766665554443333    45566666666664  2211112223345666666666


Q ss_pred             CC-cCcccCcCCcCCCCCcCEEEccCCc-------CCCcCChhHHHhcccCcEE-ECcCCcCCCCCCcccCCCCCCCEEE
Q 004704          152 NN-SFSGILQLPKAKHDFLHHLDISCNN-------FRGKLPHNMGVILQKLMYM-DISKNCFEGNIPYSAGEMKELSLLD  222 (735)
Q Consensus       152 ~n-~l~~~~~~~~~~~~~L~~L~Ls~n~-------l~~~~~~~~~~~l~~L~~L-~L~~n~l~~~~~~~l~~l~~L~~L~  222 (735)
                      +| .+.+ .+..+..+++|++|+++.+.       +. .++..+ ..+++|+.+ .+.+... +.++..+..+++|++|+
T Consensus       220 ~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~l~~~l-~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~  295 (594)
T 2p1m_B          220 RAVPLEK-LATLLQRAPQLEELGTGGYTAEVRPDVYS-GLSVAL-SGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLN  295 (594)
T ss_dssp             TTSCHHH-HHHHHHHCTTCSEEECSBCCCCCCHHHHH-HHHHHH-HTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEE
T ss_pred             CCCcHHH-HHHHHhcCCcceEcccccccCccchhhHH-HHHHHH-hcCCCcccccCCcccch-hhHHHHHHhhCCCCEEE
Confidence            66 2222 34444555666666654332       11 122222 224555555 2222211 12333333445555555


Q ss_pred             CCCccccCccchhhhhCCCCCCEEEccCC
Q 004704          223 LSRNYFSGGLSQSVVTGCFSLELLDLSNN  251 (735)
Q Consensus       223 L~~n~l~~~~~~~~~~~l~~L~~L~L~~n  251 (735)
                      +++|.+++.....+...+++|++|++++|
T Consensus       296 L~~~~l~~~~l~~~~~~~~~L~~L~l~~~  324 (594)
T 2p1m_B          296 LSYATVQSYDLVKLLCQCPKLQRLWVLDY  324 (594)
T ss_dssp             CTTCCCCHHHHHHHHTTCTTCCEEEEEGG
T ss_pred             ccCCCCCHHHHHHHHhcCCCcCEEeCcCc
Confidence            55555443333333344555555555554

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.94  E-value=8.2e-28  Score=248.34  Aligned_cols=248  Identities=19%  Similarity=0.232  Sum_probs=184.8

Q ss_pred             cCCCCCCEEEccccccCccccccccCCCCCCEEEeeCCccC-CCCCchhh-------hhcccCcEEEcCCCcCCCCCCcc
Q 004704          262 MNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLS-GHIPHWMG-------NFSSELEILSMSKNHLEGNVPVQ  333 (735)
Q Consensus       262 ~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~-~~~p~~~~-------~~~~~L~~L~l~~n~l~~~~~~~  333 (735)
                      ...++|+.|++++|.+  .+|..+...  |+.|++++|.++ ..+|..+.       .++. |++|++++|++++..|..
T Consensus        40 ~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~  114 (312)
T 1wwl_A           40 GGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISG-LQELTLENLEVTGTAPPP  114 (312)
T ss_dssp             EEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSC-CCEEEEEEEBCBSCCCCC
T ss_pred             ccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCC-ccEEEccCCcccchhHHH
Confidence            3345566666666666  344444322  666666666663 34454443       4544 777777777777777766


Q ss_pred             C--CCCCCCCEEEcccCCCCccCCCcc-CC-----CCccEEEccCCcccccCcccccCCCCCcEEeCCCCccccc--CCh
Q 004704          334 L--NNLERLRILDISENRLSGPIASSL-NL-----SSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGR--IPH  403 (735)
Q Consensus       334 l--~~l~~L~~L~L~~n~l~~~~~~~~-~l-----~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~--~~~  403 (735)
                      +  ..+++|++|++++|++++. +..+ .+     ++|++|++++|.+.+..+..+..+++|++|++++|++.+.  .+.
T Consensus       115 ~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~  193 (312)
T 1wwl_A          115 LLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLIS  193 (312)
T ss_dssp             SSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHH
T ss_pred             HHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHH
Confidence            5  7788888888888888776 4433 44     8899999999999888888889999999999999998765  334


Q ss_pred             hh--hCCCCccEEEccCCcCCCC--C-chhhhcCCCCCEEECcCCcCCCCCCchhhcccccccccCCccCCCCCCCcccc
Q 004704          404 QI--NEHSNLRFLLLGGNHLQGP--I-PDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELD  478 (735)
Q Consensus       404 ~~--~~l~~L~~L~L~~n~l~~~--~-~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~  478 (735)
                      .+  ..+++|++|++++|.+++.  + ...+..+++|+.|++++|++++..|....                        
T Consensus       194 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~------------------------  249 (312)
T 1wwl_A          194 ALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSC------------------------  249 (312)
T ss_dssp             HSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCC------------------------
T ss_pred             HHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhh------------------------
Confidence            44  7889999999999999832  2 23456789999999999999876642111                        


Q ss_pred             hhhhcccCCCCCCCccccchhhhhhhhhhhhccccceeEEEEeccccccccCCcccccceEECCCCcccCCCCccccccc
Q 004704          479 EEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQ  558 (735)
Q Consensus       479 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~  558 (735)
                                                                          ..+++|+.|+|++|+++ .+|..+.  +
T Consensus       250 ----------------------------------------------------~~l~~L~~L~Ls~N~l~-~ip~~~~--~  274 (312)
T 1wwl_A          250 ----------------------------------------------------DWPSQLNSLNLSFTGLK-QVPKGLP--A  274 (312)
T ss_dssp             ----------------------------------------------------CCCTTCCEEECTTSCCS-SCCSSCC--S
T ss_pred             ----------------------------------------------------hhcCCCCEEECCCCccC-hhhhhcc--C
Confidence                                                                12367889999999999 8888877  8


Q ss_pred             cCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccc
Q 004704          559 AILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTG  596 (735)
Q Consensus       559 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~  596 (735)
                      +|++|+|++|++++. |. +..+++|++|+|++|++++
T Consensus       275 ~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          275 KLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             EEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred             CceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence            999999999999966 66 9999999999999999985

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.93  E-value=2.3e-27  Score=245.51  Aligned_cols=265  Identities=19%  Similarity=0.212  Sum_probs=180.7

Q ss_pred             CEEEccCCcCCCcCChhHHHhcccCcEEECcCCcCCCCCCcccCCCCCCCEEECCCccccCccchhhhhCCCCCCEEEcc
Q 004704          170 HHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLS  249 (735)
Q Consensus       170 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~  249 (735)
                      +..+++.+.+. ..+..++..+++|++|++++|.+++..|..+..+++|++|++++|.+++..+   +..+++|++|+++
T Consensus        13 ~i~~ls~~~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~l~~L~~L~Ls   88 (317)
T 3o53_A           13 KIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLN   88 (317)
T ss_dssp             EEESCCTTTHH-HHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE---ETTCTTCCEEECC
T ss_pred             eEeeccccchh-hhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh---hhhcCCCCEEECc
Confidence            34445555544 3444444445667777777777765555666777777777777777664333   4566777777777


Q ss_pred             CCCCCCcCcccccCCCCCCEEEccccccCccccccccCCCCCCEEEeeCCccCCCCCchhhhhcccCcEEEcCCCcCCCC
Q 004704          250 NNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGN  329 (735)
Q Consensus       250 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~  329 (735)
                      +|.+++..     ..++|++|++++|.+++..+..   +++|++|++++|.+++..+..+..++. |++|++++|.+++.
T Consensus        89 ~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~-L~~L~Ls~N~l~~~  159 (317)
T 3o53_A           89 NNYVQELL-----VGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSR-VQYLDLKLNEIDTV  159 (317)
T ss_dssp             SSEEEEEE-----ECTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSS-EEEEECTTSCCCEE
T ss_pred             CCcccccc-----CCCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCC-CCEEECCCCCCCcc
Confidence            77665322     2367777777777776544433   466777778777777555556666665 88888888877766


Q ss_pred             CCccC-CCCCCCCEEEcccCCCCccCCCccCCCCccEEEccCCcccccCcccccCCCCCcEEeCCCCcccccCChhhhCC
Q 004704          330 VPVQL-NNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEH  408 (735)
Q Consensus       330 ~~~~l-~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l  408 (735)
                      .+..+ ..+++|++|++++|.+++.. ....+++|++|++++|.+++..+ .+..+++|+.|++++|+++ .+|..+..+
T Consensus       160 ~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~l~~L~~L~Ls~N~l~~l~~-~~~~l~~L~~L~L~~N~l~-~l~~~~~~l  236 (317)
T 3o53_A          160 NFAELAASSDTLEHLNLQYNFIYDVK-GQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLV-LIEKALRFS  236 (317)
T ss_dssp             EGGGGGGGTTTCCEEECTTSCCCEEE-CCCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCC-EECTTCCCC
T ss_pred             cHHHHhhccCcCCEEECCCCcCcccc-cccccccCCEEECCCCcCCcchh-hhcccCcccEEECcCCccc-chhhHhhcC
Confidence            56555 35777888888888877653 23357788888888888876544 4777888888888888887 567777888


Q ss_pred             CCccEEEccCCcCC-CCCchhhhcCCCCCEEECcCC-cCCCCCC
Q 004704          409 SNLRFLLLGGNHLQ-GPIPDQLCQLQKLAMMDLSRN-KFSGSIP  450 (735)
Q Consensus       409 ~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~N-~l~~~~p  450 (735)
                      ++|+.|++++|++. +.++..+..+++|+.++++++ .++|..|
T Consensus       237 ~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~  280 (317)
T 3o53_A          237 QNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNE  280 (317)
T ss_dssp             TTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSS
T ss_pred             CCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCch
Confidence            88888888888887 667777888888888888744 4554444

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.93  E-value=1.1e-24  Score=243.11  Aligned_cols=264  Identities=25%  Similarity=0.287  Sum_probs=122.8

Q ss_pred             eeEEEeeCCCCCCCCchhhhCCCCCCEEEccCCcCcccCchHHHhCCCCCcEEECcCCcCcccCcCCcCCCCCcCEEEcc
Q 004704           96 LIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDIS  175 (735)
Q Consensus        96 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls  175 (735)
                      +++|++++|+++ .+|..+.  ++|++|++++|+++ .+|.    .+++|++|++++|+++++..    .+++|++|+++
T Consensus        42 l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls  109 (622)
T 3g06_A           42 NAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSLPV----LPPGLLELSIF  109 (622)
T ss_dssp             CCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC----CCTTCCEEEECSCCCSCCCC----CCTTCCEEEEC
T ss_pred             CcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC----cCCCCCEEEcCCCcCCcCCC----CCCCCCEEECc
Confidence            445555555554 3333332  45555555555555 4443    34555555555555554322    34555555555


Q ss_pred             CCcCCCcCChhHHHhcccCcEEECcCCcCCCCCCcccCCCCCCCEEECCCccccCccchhhhhCCCCCCEEEccCCCCCC
Q 004704          176 CNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEG  255 (735)
Q Consensus       176 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~  255 (735)
                      +|.++ .+|.    .+++|+.|++++|.+++ +|..   +++|++|++++|.++ .+|.    ...+|+.|++++|.+++
T Consensus       110 ~N~l~-~l~~----~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~-~l~~----~~~~L~~L~L~~N~l~~  175 (622)
T 3g06_A          110 SNPLT-HLPA----LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLA-SLPA----LPSELCKLWAYNNQLTS  175 (622)
T ss_dssp             SCCCC-CCCC----CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSC
T ss_pred             CCcCC-CCCC----CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCC-CcCC----ccCCCCEEECCCCCCCC
Confidence            55555 3333    13455555555555542 3332   245555555555554 2322    23445555555555543


Q ss_pred             cCcccccCCCCCCEEEccccccCccccccccCCCCCCEEEeeCCccCCCCCchhhhhcccCcEEEcCCCcCCCCCCccCC
Q 004704          256 QFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLN  335 (735)
Q Consensus       256 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~  335 (735)
                       +|   ..+++|+.|++++|.+++ +|..   .++|+.|++++|.++ .+|..+    .+|+.|++++|++++ +|   .
T Consensus       176 -l~---~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~-~l~~~~----~~L~~L~Ls~N~L~~-lp---~  238 (622)
T 3g06_A          176 -LP---MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPALP----SGLKELIVSGNRLTS-LP---V  238 (622)
T ss_dssp             -CC---CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-SCCCCC----TTCCEEECCSSCCSC-CC---C
T ss_pred             -Cc---ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCccc-ccCCCC----CCCCEEEccCCccCc-CC---C
Confidence             22   223445555555555442 2221   244455555555444 333211    124444444444442 22   2


Q ss_pred             CCCCCCEEEcccCCCCccCCCccCCCCccEEEccCCcccccCcccccCCCCCcEEeCCCCcccccCChhhhCCCCccEEE
Q 004704          336 NLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLL  415 (735)
Q Consensus       336 ~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  415 (735)
                      .                       +++|+.|++++|.++. +|.   .+++|+.|++++|+++ .+|..+..+++|+.|+
T Consensus       239 ~-----------------------l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~  290 (622)
T 3g06_A          239 L-----------------------PSELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVN  290 (622)
T ss_dssp             C-----------------------CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEE
T ss_pred             C-----------------------CCcCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEE
Confidence            2                       3444444444444442 222   3344555555555555 4455555555555555


Q ss_pred             ccCCcCCCCCchhhh
Q 004704          416 LGGNHLQGPIPDQLC  430 (735)
Q Consensus       416 L~~n~l~~~~~~~~~  430 (735)
                      |++|++.+..|..+.
T Consensus       291 L~~N~l~~~~~~~l~  305 (622)
T 3g06_A          291 LEGNPLSERTLQALR  305 (622)
T ss_dssp             CCSCCCCHHHHHHHH
T ss_pred             ecCCCCCCcCHHHHH
Confidence            555555544444443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.93  E-value=2.2e-26  Score=252.07  Aligned_cols=215  Identities=20%  Similarity=0.207  Sum_probs=137.6

Q ss_pred             CcEEEcCCCcCCCCCCccCCCCCCCCEEEcccCCCCccCCCccCCCCccEEEccCCcccccCcccccCCCCCcEEeCCCC
Q 004704          316 LEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDN  395 (735)
Q Consensus       316 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n  395 (735)
                      |+.|++++|.+++..|..|..+++|++|++++|.+++.++ ...+++|++|++++|.+++..+     .++|++|++++|
T Consensus        36 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~L~~N  109 (487)
T 3oja_A           36 VKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV-----GPSIETLHAANN  109 (487)
T ss_dssp             CCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEECCSS
T ss_pred             ccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCC-----CCCcCEEECcCC
Confidence            6666666666666555666666666666666666665444 3356666666666666664322     256777777777


Q ss_pred             cccccCChhhhCCCCccEEEccCCcCCCCCchhhhcCCCCCEEECcCCcCCCCCCchhhcccccccccCCccCCCCCCCc
Q 004704          396 TFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSP  475 (735)
Q Consensus       396 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~  475 (735)
                      .+++..+.   .+++|+.|++++|.+++..|..+..+++|+.|++++|.+++..|..+..                    
T Consensus       110 ~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~--------------------  166 (487)
T 3oja_A          110 NISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAA--------------------  166 (487)
T ss_dssp             CCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGG--------------------
T ss_pred             cCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhh--------------------
Confidence            77654433   2456777777777777666666677777777777777776655544321                    


Q ss_pred             ccchhhhcccCCCCCCCccccchhhhhhhhhhhhccccceeEEEEeccccccccCCcccccceEECCCCcccCCCCcccc
Q 004704          476 ELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIG  555 (735)
Q Consensus       476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~  555 (735)
                                                                              .+++|+.|+|++|.+++. |. +.
T Consensus       167 --------------------------------------------------------~l~~L~~L~Ls~N~l~~~-~~-~~  188 (487)
T 3oja_A          167 --------------------------------------------------------SSDTLEHLNLQYNFIYDV-KG-QV  188 (487)
T ss_dssp             --------------------------------------------------------GTTTCCEEECTTSCCCEE-EC-CC
T ss_pred             --------------------------------------------------------hCCcccEEecCCCccccc-cc-cc
Confidence                                                                    124566677777777644 22 33


Q ss_pred             ccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccCCccccCCCCCCeEEcccCcCc
Q 004704          556 QLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLS  619 (735)
Q Consensus       556 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~  619 (735)
                      .+++|+.|+|++|.+++.+| .|..+++|+.|||++|++++ +|..+..+++|+.|++++|++.
T Consensus       189 ~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~  250 (487)
T 3oja_A          189 VFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFH  250 (487)
T ss_dssp             CCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBC
T ss_pred             cCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCc
Confidence            46777777777777775444 37777777777777777774 5666777777777777777776

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.93  E-value=1e-26  Score=254.74  Aligned_cols=235  Identities=21%  Similarity=0.231  Sum_probs=189.0

Q ss_pred             CCCCEEEeeCCccCCCCCchhhhhcccCcEEEcCCCcCCCCCCccCCCCCCCCEEEcccCCCCccCCCccCCCCccEEEc
Q 004704          289 TSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSL  368 (735)
Q Consensus       289 ~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l  368 (735)
                      ++|++|++++|.+++..|..+..++. |+.|++++|.+++..|  +..+++|++|++++|.+++..+    .++|+.|++
T Consensus        34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~-L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~L  106 (487)
T 3oja_A           34 WNVKELDLSGNPLSQISAADLAPFTK-LELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV----GPSIETLHA  106 (487)
T ss_dssp             GGCCEEECCSSCCCCCCGGGGTTCTT-CCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE----CTTCCEEEC
T ss_pred             CCccEEEeeCCcCCCCCHHHHhCCCC-CCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC----CCCcCEEEC
Confidence            46777777777777655666666665 7777777777765544  7777788888888887765442    377888888


Q ss_pred             cCCcccccCcccccCCCCCcEEeCCCCcccccCChhhhCCCCccEEEccCCcCCCCCchhhh-cCCCCCEEECcCCcCCC
Q 004704          369 QKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLC-QLQKLAMMDLSRNKFSG  447 (735)
Q Consensus       369 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~  447 (735)
                      ++|.+++..+.   .+++|+.|++++|.+++..|..++.+++|+.|++++|.+++..|..+. .+++|+.|++++|.+++
T Consensus       107 ~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~  183 (487)
T 3oja_A          107 ANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD  183 (487)
T ss_dssp             CSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred             cCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc
Confidence            88888876554   357899999999999988888899999999999999999988888776 78999999999999875


Q ss_pred             CCCchhhcccccccccCCccCCCCCCCcccchhhhcccCCCCCCCccccchhhhhhhhhhhhccccceeEEEEecccccc
Q 004704          448 SIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEI  527 (735)
Q Consensus       448 ~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  527 (735)
                      ..+.                                                                            
T Consensus       184 ~~~~----------------------------------------------------------------------------  187 (487)
T 3oja_A          184 VKGQ----------------------------------------------------------------------------  187 (487)
T ss_dssp             EECC----------------------------------------------------------------------------
T ss_pred             cccc----------------------------------------------------------------------------
Confidence            4111                                                                            


Q ss_pred             ccCCcccccceEECCCCcccCCCCccccccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCccc-ccCCccccCCC
Q 004704          528 YNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLT-GQIPPQLTALN  606 (735)
Q Consensus       528 ~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~-~~~p~~l~~l~  606 (735)
                         ..+++|+.|+|++|.+++ +|..++.+++|+.|+|++|.+++ +|..++.+++|+.|++++|.+. +.+|..+..++
T Consensus       188 ---~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~  262 (487)
T 3oja_A          188 ---VVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQ  262 (487)
T ss_dssp             ---CCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCH
T ss_pred             ---ccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCC
Confidence               123678899999999996 55569999999999999999995 7778999999999999999998 77888888888


Q ss_pred             CCCeEEcc
Q 004704          607 FLSIFNVS  614 (735)
Q Consensus       607 ~L~~L~ls  614 (735)
                      .|+.++++
T Consensus       263 ~L~~l~~~  270 (487)
T 3oja_A          263 RVQTVAKQ  270 (487)
T ss_dssp             HHHHHHHH
T ss_pred             CCcEEecc
Confidence            88888876

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.93  E-value=1e-24  Score=221.18  Aligned_cols=208  Identities=21%  Similarity=0.244  Sum_probs=127.7

Q ss_pred             CCCEEEcccCCCCccCCCcc-CCCCccEEEccCCcccccCcccccCCCCCcEEeCCCCcccccCChhhhCCCCccEEEcc
Q 004704          339 RLRILDISENRLSGPIASSL-NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLG  417 (735)
Q Consensus       339 ~L~~L~L~~n~l~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~  417 (735)
                      +|++|++++|.+++..+..+ .+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|+++
T Consensus        29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  108 (276)
T 2z62_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV  108 (276)
T ss_dssp             TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred             CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence            34444444444444333222 44444444554554444444455555566666666666655555556666666666666


Q ss_pred             CCcCCCCCchhhhcCCCCCEEECcCCcCCCC-CCchhhcccccccccCCccCCCCCCCcccchhhhcccCCCCCCCcccc
Q 004704          418 GNHLQGPIPDQLCQLQKLAMMDLSRNKFSGS-IPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMF  496 (735)
Q Consensus       418 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  496 (735)
                      +|.+.+..+..+..+++|++|++++|++++. +|..+..+                                        
T Consensus       109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l----------------------------------------  148 (276)
T 2z62_A          109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL----------------------------------------  148 (276)
T ss_dssp             TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGC----------------------------------------
T ss_pred             CCCccccCchhcccCCCCCEEECcCCccceecCchhhccC----------------------------------------
Confidence            6666654444566666666666666666542 34433322                                        


Q ss_pred             chhhhhhhhhhhhccccceeEEEEeccccccccCCcccccceEECCCCcccCCCCccccccccCC----eEeCCCCcCcc
Q 004704          497 GMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAIL----ALNLSNNSLSG  572 (735)
Q Consensus       497 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~----~L~Ls~N~l~~  572 (735)
                                                           ++|+.|++++|++++..+..+..+.+|+    .|++++|.+++
T Consensus       149 -------------------------------------~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~  191 (276)
T 2z62_A          149 -------------------------------------TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF  191 (276)
T ss_dssp             -------------------------------------TTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCE
T ss_pred             -------------------------------------CCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccc
Confidence                                                 4455666666666655555666666666    78888888886


Q ss_pred             cCcccccCcCCCCEEeCCCCcccccCCccccCCCCCCeEEcccCcCcccCCC
Q 004704          573 SIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPD  624 (735)
Q Consensus       573 ~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~  624 (735)
                      ..+..+.. .+|+.|+|++|++++..+..+..+++|+.|++++|+++|.+|.
T Consensus       192 ~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~  242 (276)
T 2z62_A          192 IQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  242 (276)
T ss_dssp             ECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTT
T ss_pred             cCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCc
Confidence            65555544 4788888888888877666778888899999988888877764

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.92  E-value=1.5e-23  Score=211.65  Aligned_cols=205  Identities=25%  Similarity=0.287  Sum_probs=146.1

Q ss_pred             CCEEEcccCCCCccCCCccCCCCccEEEccCCcccccCcccccCCCCCcEEeCCCCcccccCChhhhCCCCccEEEccCC
Q 004704          340 LRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGN  419 (735)
Q Consensus       340 L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n  419 (735)
                      .+.++++++.++..+...  .++++.|++++|.+++..+..|..+++|++|++++|++++..+..|..+++|++|++++|
T Consensus        18 ~~~l~~~~~~l~~ip~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n   95 (270)
T 2o6q_A           18 KNSVDCSSKKLTAIPSNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN   95 (270)
T ss_dssp             TTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSS
T ss_pred             CCEEEccCCCCCccCCCC--CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCC
Confidence            344555555544322211  134566666666666555556667777777777777777555555667777777777777


Q ss_pred             cCCCCCchhhhcCCCCCEEECcCCcCCCCCCchhhcccccccccCCccCCCCCCCcccchhhhcccCCCCCCCccccchh
Q 004704          420 HLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMW  499 (735)
Q Consensus       420 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  499 (735)
                      .+++..+..+..+++|+.|++++|++++..+..+..                                            
T Consensus        96 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--------------------------------------------  131 (270)
T 2o6q_A           96 KLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDS--------------------------------------------  131 (270)
T ss_dssp             CCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTT--------------------------------------------
T ss_pred             cCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCc--------------------------------------------
Confidence            777666666777778888888888777555444433                                            


Q ss_pred             hhhhhhhhhhccccceeEEEEeccccccccCCcccccceEECCCCcccCCCCccccccccCCeEeCCCCcCcccCccccc
Q 004704          500 RWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFS  579 (735)
Q Consensus       500 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~  579 (735)
                                                       +++|+.|+|++|++++..+..|+.+++|+.|+|++|++++..+..|.
T Consensus       132 ---------------------------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  178 (270)
T 2o6q_A          132 ---------------------------------LTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFD  178 (270)
T ss_dssp             ---------------------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTT
T ss_pred             ---------------------------------CcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhc
Confidence                                             25677788888888865556688888999999999999877777788


Q ss_pred             CcCCCCEEeCCCCcccccCCccccCCCCCCeEEcccCcCcccCC
Q 004704          580 NLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTP  623 (735)
Q Consensus       580 ~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p  623 (735)
                      ++++|++|+|++|++++..+..+..+++|+.|++++|++.+.++
T Consensus       179 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  222 (270)
T 2o6q_A          179 KLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCN  222 (270)
T ss_dssp             TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred             cCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCc
Confidence            89999999999999987777778888999999998888877655

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.91  E-value=9.7e-24  Score=213.92  Aligned_cols=227  Identities=20%  Similarity=0.214  Sum_probs=182.3

Q ss_pred             EEeeCCccCCCCCchhhhhcccCcEEEcCCCcCCCCCCccCCCCCCCCEEEcccCCCCccCCCcc-CCCCccEEEccCCc
Q 004704          294 LDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSL-NLSSVEHLSLQKNA  372 (735)
Q Consensus       294 L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~-~l~~L~~L~l~~n~  372 (735)
                      ++..+..+. .+|..+   +.++++|++++|++++..+..|.++++|++|++++|++.+..+..+ .+++|++|++++|.
T Consensus        12 ~~c~~~~l~-~ip~~l---~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~   87 (276)
T 2z62_A           12 YQCMELNFY-KIPDNL---PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP   87 (276)
T ss_dssp             EECTTSCCS-SCCSSS---CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred             EEecCCCcc-ccCCCC---CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc
Confidence            444455554 566544   2348888888888887777788888888888888888887776555 78889999999999


Q ss_pred             ccccCcccccCCCCCcEEeCCCCcccccCChhhhCCCCccEEEccCCcCCCC-CchhhhcCCCCCEEECcCCcCCCCCCc
Q 004704          373 LNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGP-IPDQLCQLQKLAMMDLSRNKFSGSIPP  451 (735)
Q Consensus       373 l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~p~  451 (735)
                      +++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++. +|..+..+++|+.|++++|++++..+.
T Consensus        88 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~  167 (276)
T 2z62_A           88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT  167 (276)
T ss_dssp             CCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG
T ss_pred             cCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHH
Confidence            8888888889999999999999999877776789999999999999999864 588999999999999999999876666


Q ss_pred             hhhcccccccccCCccCCCCCCCcccchhhhcccCCCCCCCccccchhhhhhhhhhhhccccceeEEEEeccccccccCC
Q 004704          452 CFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGS  531 (735)
Q Consensus       452 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  531 (735)
                      .+..+..+                                                                        
T Consensus       168 ~~~~l~~L------------------------------------------------------------------------  175 (276)
T 2z62_A          168 DLRVLHQM------------------------------------------------------------------------  175 (276)
T ss_dssp             GGHHHHTC------------------------------------------------------------------------
T ss_pred             Hhhhhhhc------------------------------------------------------------------------
Confidence            65544211                                                                        


Q ss_pred             cccccc-eEECCCCcccCCCCccccccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccCC
Q 004704          532 NVNRVT-GLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIP  599 (735)
Q Consensus       532 ~l~~L~-~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p  599 (735)
                        +.+. .|++++|++++..+..+. ..+|+.|+|++|++++..+..|+++++|+.|+|++|++++..|
T Consensus       176 --~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  241 (276)
T 2z62_A          176 --PLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  241 (276)
T ss_dssp             --TTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred             --cccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence              2222 699999999965555444 4589999999999998777788999999999999999996543

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.91  E-value=1.3e-23  Score=213.75  Aligned_cols=205  Identities=20%  Similarity=0.191  Sum_probs=137.1

Q ss_pred             CCCCCCCCEEEcccCCCCccCCCccCCCCccEEEccCCcccccCcccccCCCCCcEEeCCCCcccccCChhhhCCCCccE
Q 004704          334 LNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRF  413 (735)
Q Consensus       334 l~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  413 (735)
                      +.+++++++++++++.++..++..  .+.++.|++++|.+++..+..+..+++|+.|++++|.+++..+.  ..+++|++
T Consensus         6 ~~~l~~l~~l~~~~~~l~~ip~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~   81 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLTALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGT   81 (290)
T ss_dssp             EECSTTCCEEECTTSCCSSCCSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCE
T ss_pred             ccccCCccEEECCCCCCCcCCCCC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCE
Confidence            456677888888888777544433  25677777777777776667777777777777777777643322  56677777


Q ss_pred             EEccCCcCCCCCchhhhcCCCCCEEECcCCcCCCCCCchhhcccccccccCCccCCCCCCCcccchhhhcccCCCCCCCc
Q 004704          414 LLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSN  493 (735)
Q Consensus       414 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  493 (735)
                      |++++|.++ .+|..+..+++|+.|++++|++++..|..|..                                      
T Consensus        82 L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~--------------------------------------  122 (290)
T 1p9a_G           82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRG--------------------------------------  122 (290)
T ss_dssp             EECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTT--------------------------------------
T ss_pred             EECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcC--------------------------------------
Confidence            777777776 56666667777777777777776544444433                                      


Q ss_pred             cccchhhhhhhhhhhhccccceeEEEEeccccccccCCcccccceEECCCCcccCCCCccccccccCCeEeCCCCcCccc
Q 004704          494 TMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGS  573 (735)
Q Consensus       494 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~  573 (735)
                                                             +++|+.|+|++|++++..+..|..+++|+.|+|++|++++.
T Consensus       123 ---------------------------------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l  163 (290)
T 1p9a_G          123 ---------------------------------------LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL  163 (290)
T ss_dssp             ---------------------------------------CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCC
T ss_pred             ---------------------------------------CCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCcc
Confidence                                                   24566677777777755555566677777777777777755


Q ss_pred             CcccccCcCCCCEEeCCCCcccccCCccccCCCCCCeEEcccCcCccc
Q 004704          574 IPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGR  621 (735)
Q Consensus       574 ~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~  621 (735)
                      .+..|..+++|+.|+|++|+++ .+|..+..+..|+.+++++|++.+.
T Consensus       164 ~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~  210 (290)
T 1p9a_G          164 PAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCN  210 (290)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCS
T ss_pred             CHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCc
Confidence            5555666777777777777776 5666666666677777766666543

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.91  E-value=3.8e-23  Score=208.63  Aligned_cols=206  Identities=20%  Similarity=0.254  Sum_probs=179.2

Q ss_pred             CCccEEEccCCcccccCcccccCCCCCcEEeCCCCcccccCChhhhCCCCccEEEccCCcCCCCCchhhhcCCCCCEEEC
Q 004704          361 SSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDL  440 (735)
Q Consensus       361 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  440 (735)
                      ...+.++++++.++. +|..+.  ++++.|++++|++++..+..|..+++|++|++++|.+++..+..|..+++|++|++
T Consensus        16 ~~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l   92 (270)
T 2o6q_A           16 NNKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV   92 (270)
T ss_dssp             TTTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred             CCCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence            357899999999985 565443  68999999999999777778999999999999999999766777899999999999


Q ss_pred             cCCcCCCCCCchhhcccccccccCCccCCCCCCCcccchhhhcccCCCCCCCccccchhhhhhhhhhhhccccceeEEEE
Q 004704          441 SRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFA  520 (735)
Q Consensus       441 s~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  520 (735)
                      ++|++++..+..+..                                                                 
T Consensus        93 ~~n~l~~~~~~~~~~-----------------------------------------------------------------  107 (270)
T 2o6q_A           93 TDNKLQALPIGVFDQ-----------------------------------------------------------------  107 (270)
T ss_dssp             CSSCCCCCCTTTTTT-----------------------------------------------------------------
T ss_pred             CCCcCCcCCHhHccc-----------------------------------------------------------------
Confidence            999998655544433                                                                 


Q ss_pred             eccccccccCCcccccceEECCCCcccCCCCccccccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccCCc
Q 004704          521 MKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPP  600 (735)
Q Consensus       521 ~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~  600 (735)
                                  +++|+.|++++|++++..|..|+.+++|++|+|++|.+++..+..|+.+++|++|+|++|++++..+.
T Consensus       108 ------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  175 (270)
T 2o6q_A          108 ------------LVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEG  175 (270)
T ss_dssp             ------------CSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred             ------------ccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChh
Confidence                        36788999999999988888899999999999999999987777899999999999999999988888


Q ss_pred             cccCCCCCCeEEcccCcCcccCCC-CCCCCccCCcccCCCCCCCCcc
Q 004704          601 QLTALNFLSIFNVSYNNLSGRTPD-KGQFATFDESSYRGNPSLCAWL  646 (735)
Q Consensus       601 ~l~~l~~L~~L~ls~N~l~~~~p~-~~~~~~~~~~~~~gN~~lc~~~  646 (735)
                      .+..+++|++|++++|++++..+. ...+..+....+.|||+.|+|.
T Consensus       176 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  222 (270)
T 2o6q_A          176 AFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCN  222 (270)
T ss_dssp             TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred             HhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCc
Confidence            899999999999999999977664 3456677888899999999875

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.91  E-value=3.1e-23  Score=211.03  Aligned_cols=206  Identities=24%  Similarity=0.219  Sum_probs=158.4

Q ss_pred             CCCCccEEEccCCcccccCcccccCCCCCcEEeCCCCcccccCChhhhCCCCccEEEccCCcCCCCCchhhhcCCCCCEE
Q 004704          359 NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMM  438 (735)
Q Consensus       359 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  438 (735)
                      .++++++++++++.++. +|..+.  ++++.|++++|.+++..+..+..+++|++|++++|.+++. +.. ..+++|+.|
T Consensus         8 ~l~~l~~l~~~~~~l~~-ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~-~~l~~L~~L   82 (290)
T 1p9a_G            8 KVASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-QVD-GTLPVLGTL   82 (290)
T ss_dssp             CSTTCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-ECC-SCCTTCCEE
T ss_pred             ccCCccEEECCCCCCCc-CCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc-cCC-CCCCcCCEE
Confidence            57788888888888874 444443  5788888888888877778888888888888888888853 332 678888888


Q ss_pred             ECcCCcCCCCCCchhhcccccccccCCccCCCCCCCcccchhhhcccCCCCCCCccccchhhhhhhhhhhhccccceeEE
Q 004704          439 DLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIE  518 (735)
Q Consensus       439 ~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  518 (735)
                      ++++|+++ .+|..+..                                                               
T Consensus        83 ~Ls~N~l~-~l~~~~~~---------------------------------------------------------------   98 (290)
T 1p9a_G           83 DLSHNQLQ-SLPLLGQT---------------------------------------------------------------   98 (290)
T ss_dssp             ECCSSCCS-SCCCCTTT---------------------------------------------------------------
T ss_pred             ECCCCcCC-cCchhhcc---------------------------------------------------------------
Confidence            88888886 44443322                                                               


Q ss_pred             EEeccccccccCCcccccceEECCCCcccCCCCccccccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccC
Q 004704          519 FAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQI  598 (735)
Q Consensus       519 ~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~  598 (735)
                                    +++|+.|++++|++++..|..|..+++|++|+|++|++++..+..|..+++|+.|+|++|++++..
T Consensus        99 --------------l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~  164 (290)
T 1p9a_G           99 --------------LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELP  164 (290)
T ss_dssp             --------------CTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCC
T ss_pred             --------------CCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccC
Confidence                          356778888888888766677888888888888888888777777888888888888888888666


Q ss_pred             CccccCCCCCCeEEcccCcCcccCCCCCCCCccCCcccCCCCCCCCccc
Q 004704          599 PPQLTALNFLSIFNVSYNNLSGRTPDKGQFATFDESSYRGNPSLCAWLI  647 (735)
Q Consensus       599 p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~gN~~lc~~~~  647 (735)
                      +..+..+++|++|++++|+++...+.......+....+.||||.|+|.+
T Consensus       165 ~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~C~c~~  213 (290)
T 1p9a_G          165 AGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNCEI  213 (290)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBCCSGGG
T ss_pred             HHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCccCcCcc
Confidence            6677888888888888888885544444455566777888888887643

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.90  E-value=3.6e-23  Score=208.96  Aligned_cols=220  Identities=21%  Similarity=0.227  Sum_probs=169.0

Q ss_pred             CcEEEcCCCcCCCCCCccCCCCCCCCEEEcccCCCCccCCCccCCCCccEEEccCCcccccCcccccCCCCCcEEeCCCC
Q 004704          316 LEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDN  395 (735)
Q Consensus       316 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n  395 (735)
                      +..+++.++.+....  ....+++|+.|++++|.+.. ++....+++|++|++++|.+.+.  ..+..+++|++|++++|
T Consensus        21 l~~l~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~-~~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n   95 (272)
T 3rfs_A           21 TIKANLKKKSVTDAV--TQNELNSIDQIIANNSDIKS-VQGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGN   95 (272)
T ss_dssp             HHHHHHTCSCTTSEE--CHHHHTTCCEEECTTSCCCC-CTTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTS
T ss_pred             HHHHHhcCccccccc--ccccccceeeeeeCCCCccc-ccccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCC
Confidence            444555555554332  23455667777777776653 23333677777777777777653  36778888888888888


Q ss_pred             cccccCChhhhCCCCccEEEccCCcCCCCCchhhhcCCCCCEEECcCCcCCCCCCchhhcccccccccCCccCCCCCCCc
Q 004704          396 TFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSP  475 (735)
Q Consensus       396 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~  475 (735)
                      .+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|++++..+..+..                    
T Consensus        96 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~--------------------  155 (272)
T 3rfs_A           96 QLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDK--------------------  155 (272)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT--------------------
T ss_pred             ccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhcc--------------------
Confidence            888777777888888999999999888777777888889999999999888655544433                    


Q ss_pred             ccchhhhcccCCCCCCCccccchhhhhhhhhhhhccccceeEEEEeccccccccCCcccccceEECCCCcccCCCCcccc
Q 004704          476 ELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIG  555 (735)
Q Consensus       476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~  555 (735)
                                                                               +++|+.|++++|++++..+..++
T Consensus       156 ---------------------------------------------------------l~~L~~L~l~~n~l~~~~~~~~~  178 (272)
T 3rfs_A          156 ---------------------------------------------------------LTNLTELDLSYNQLQSLPEGVFD  178 (272)
T ss_dssp             ---------------------------------------------------------CTTCCEEECCSSCCCCCCTTTTT
T ss_pred             ---------------------------------------------------------CccCCEEECCCCCcCccCHHHhc
Confidence                                                                     35678899999999877777788


Q ss_pred             ccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccCCccccCCCCCCeEEcccCcCcccCCC
Q 004704          556 QLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPD  624 (735)
Q Consensus       556 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~  624 (735)
                      .+++|+.|++++|++++..|..|+.+++|+.|++++|.+.+.       ++.|+.++++.|.++|.+|.
T Consensus       179 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~  240 (272)
T 3rfs_A          179 KLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRN  240 (272)
T ss_dssp             TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBC
T ss_pred             CCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccC
Confidence            999999999999999988888889999999999999988865       44688899999999999985

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.89  E-value=9e-23  Score=206.03  Aligned_cols=209  Identities=22%  Similarity=0.262  Sum_probs=154.0

Q ss_pred             hhhcccCcEEEcCCCcCCCCCCccCCCCCCCCEEEcccCCCCccCCCccCCCCccEEEccCCcccccCcccccCCCCCcE
Q 004704          310 GNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVT  389 (735)
Q Consensus       310 ~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~  389 (735)
                      ..+.. |+.|++++|.+.. + ..+..+++|++|++++|.+.+. +....+++|++|++++|.+++..+..+..+++|++
T Consensus        38 ~~l~~-L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  113 (272)
T 3rfs_A           38 NELNS-IDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHDI-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE  113 (272)
T ss_dssp             HHHTT-CCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCCC-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred             ccccc-eeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCCc-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCE
Confidence            33444 6666666665552 1 2355566666666666666542 23336677777777777777666666777888888


Q ss_pred             EeCCCCcccccCChhhhCCCCccEEEccCCcCCCCCchhhhcCCCCCEEECcCCcCCCCCCchhhcccccccccCCccCC
Q 004704          390 LNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNG  469 (735)
Q Consensus       390 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~  469 (735)
                      |++++|++++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|++++..+..+..              
T Consensus       114 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--------------  179 (272)
T 3rfs_A          114 LVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDK--------------  179 (272)
T ss_dssp             EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT--------------
T ss_pred             EECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcC--------------
Confidence            888888888766677788888888888888888777777788888888888888888655544433              


Q ss_pred             CCCCCcccchhhhcccCCCCCCCccccchhhhhhhhhhhhccccceeEEEEeccccccccCCcccccceEECCCCcccCC
Q 004704          470 SKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGE  549 (735)
Q Consensus       470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~  549 (735)
                                                                                     +++|+.|++++|++++.
T Consensus       180 ---------------------------------------------------------------l~~L~~L~L~~N~l~~~  196 (272)
T 3rfs_A          180 ---------------------------------------------------------------LTQLKDLRLYQNQLKSV  196 (272)
T ss_dssp             ---------------------------------------------------------------CTTCCEEECCSSCCSCC
T ss_pred             ---------------------------------------------------------------CccCCEEECCCCcCCcc
Confidence                                                                           35677889999999887


Q ss_pred             CCccccccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccCCccccCCC
Q 004704          550 IPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALN  606 (735)
Q Consensus       550 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~  606 (735)
                      .|..++.+++|+.|++++|.+.+.       +++|+.|+++.|+++|.+|..+..+.
T Consensus       197 ~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~~~  246 (272)
T 3rfs_A          197 PDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSVA  246 (272)
T ss_dssp             CTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred             CHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCcccccC
Confidence            777788999999999999988854       44688999999999999999887654

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.88  E-value=2.9e-23  Score=219.04  Aligned_cols=267  Identities=16%  Similarity=0.129  Sum_probs=149.5

Q ss_pred             cCCCCCCCCccccccCCCCCCCEEeCCCCcCCCCcc----hhhhCCC-CCCEEeCCCCcccccCChhhhhcCCCCCeeec
Q 004704            2 NLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLP----SVISNLT-SLEYLDLSHNNFEGMFPLSSLANHSKLEGLLL   76 (735)
Q Consensus         2 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p----~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L   76 (735)
                      +|+.|.++|.+|..+...++|++|||++|.+++..+    .+|.+++ +|++|+|++|++++..+ ..+..+        
T Consensus         4 ~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~-~~l~~~--------   74 (362)
T 3goz_A            4 KLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNS-DELVQI--------   74 (362)
T ss_dssp             ECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCH-HHHHHH--------
T ss_pred             ccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHH-HHHHHH--------
Confidence            567788888777777777778888888888876666    6677777 78888888887765433 233322        


Q ss_pred             ccccccccccCCCCCC-CCCeeEEEeeCCCCCCCCchh----hhCC-CCCCEEEccCCcCcccCchHHHh---C-CCCCc
Q 004704           77 STRNNTLHVKTENWLP-TSQLIVLGLTKCNLNGSYPDF----LLHQ-YHLKYLDLSHNKLVGNFPTWLLR---N-NPKLE  146 (735)
Q Consensus        77 ~~~~~~~~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~----l~~l-~~L~~L~Ls~n~l~~~~p~~~~~---~-l~~L~  146 (735)
                                   +.. .++|++|+|++|.+++..+..    +..+ ++|++|++++|++++..+..+..   . .++|+
T Consensus        75 -------------l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~  141 (362)
T 3goz_A           75 -------------LAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASIT  141 (362)
T ss_dssp             -------------HHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCC
T ss_pred             -------------HhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCcee
Confidence                         000 134444444555554444443    3333 67777777777776433333221   1 23555


Q ss_pred             EEECcCCcCcccCcCCcCCCCCcCEEEccCCcCCCcCChhHHHhcccCcEEECcCCcCCCCCCcc----cCCC-CCCCEE
Q 004704          147 VLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYS----AGEM-KELSLL  221 (735)
Q Consensus       147 ~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----l~~l-~~L~~L  221 (735)
                      +|++++|.+++.....+                    +..+....++|++|++++|.+++..+..    +..+ ++|++|
T Consensus       142 ~L~Ls~N~l~~~~~~~l--------------------~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L  201 (362)
T 3goz_A          142 SLNLRGNDLGIKSSDEL--------------------IQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSL  201 (362)
T ss_dssp             EEECTTSCGGGSCHHHH--------------------HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEE
T ss_pred             EEEccCCcCCHHHHHHH--------------------HHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEE
Confidence            55555555553221111                    1111110124555555555554333322    2233 366666


Q ss_pred             ECCCccccCc----cchhhhhCCCCCCEEEccCCCCCCcCc----ccccCCCCCCEEEccccccCcc-------cccccc
Q 004704          222 DLSRNYFSGG----LSQSVVTGCFSLELLDLSNNNFEGQFF----SEYMNLTRLRHLYFENNNFSGK-------IKDGLL  286 (735)
Q Consensus       222 ~L~~n~l~~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~-------~~~~l~  286 (735)
                      ++++|.+++.    ++..+....++|++|++++|.+++..+    ..+..+++|++|++++|.+.+.       ++..+.
T Consensus       202 ~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~  281 (362)
T 3goz_A          202 DLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFP  281 (362)
T ss_dssp             ECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTST
T ss_pred             ECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhc
Confidence            6666666531    344443334577777777777775443    3345667788888888874322       234556


Q ss_pred             CCCCCCEEEeeCCccCCCCCchhh
Q 004704          287 SSTSLQVLDISNNMLSGHIPHWMG  310 (735)
Q Consensus       287 ~~~~L~~L~l~~n~l~~~~p~~~~  310 (735)
                      .+++|+.|++++|.+.+..+..+.
T Consensus       282 ~l~~L~~LdL~~N~l~~~~~~~~~  305 (362)
T 3goz_A          282 NIQKIILVDKNGKEIHPSHSIPIS  305 (362)
T ss_dssp             TCCEEEEECTTSCBCCGGGCHHHH
T ss_pred             cCCceEEEecCCCcCCCcchHHHH
Confidence            677788888888887755444333

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.88  E-value=2.4e-22  Score=200.32  Aligned_cols=183  Identities=19%  Similarity=0.244  Sum_probs=148.1

Q ss_pred             CccEEEccCCcccccCcccccCCCCCcEEeCCCCcccccCChhhhCCCCccEEEccCCcCCCCCchhhhcCCCCCEEECc
Q 004704          362 SVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLS  441 (735)
Q Consensus       362 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls  441 (735)
                      ..++++++++.++. +|..+.  ++++.|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|+.|+++
T Consensus        15 ~~~~l~~~~~~l~~-~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   91 (251)
T 3m19_A           15 GKKEVDCQGKSLDS-VPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA   91 (251)
T ss_dssp             GGTEEECTTCCCSS-CCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             CCeEEecCCCCccc-cCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence            45667777776663 344333  578888888888887777778888888888888888887777778888888888888


Q ss_pred             CCcCCCCCCchhhcccccccccCCccCCCCCCCcccchhhhcccCCCCCCCccccchhhhhhhhhhhhccccceeEEEEe
Q 004704          442 RNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAM  521 (735)
Q Consensus       442 ~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  521 (735)
                      +|++++..+..+..                                                                  
T Consensus        92 ~n~l~~~~~~~~~~------------------------------------------------------------------  105 (251)
T 3m19_A           92 NNQLASLPLGVFDH------------------------------------------------------------------  105 (251)
T ss_dssp             TSCCCCCCTTTTTT------------------------------------------------------------------
T ss_pred             CCcccccChhHhcc------------------------------------------------------------------
Confidence            88887555544433                                                                  


Q ss_pred             ccccccccCCcccccceEECCCCcccCCCCccccccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccCCcc
Q 004704          522 KNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQ  601 (735)
Q Consensus       522 ~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~  601 (735)
                                 +++|+.|+|++|++++..+..|..+++|++|+|++|++++..+..|+.+++|++|||++|++++..|..
T Consensus       106 -----------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  174 (251)
T 3m19_A          106 -----------LTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGA  174 (251)
T ss_dssp             -----------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTT
T ss_pred             -----------cCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHH
Confidence                       356788999999998666667889999999999999999877778999999999999999999888888


Q ss_pred             ccCCCCCCeEEcccCcCcccCCC
Q 004704          602 LTALNFLSIFNVSYNNLSGRTPD  624 (735)
Q Consensus       602 l~~l~~L~~L~ls~N~l~~~~p~  624 (735)
                      +..+++|++|++++|++++....
T Consensus       175 ~~~l~~L~~L~l~~N~~~c~~~~  197 (251)
T 3m19_A          175 FDRLGKLQTITLFGNQFDCSRCE  197 (251)
T ss_dssp             TTTCTTCCEEECCSCCBCTTSTT
T ss_pred             HhCCCCCCEEEeeCCceeCCccc
Confidence            99999999999999999887443

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.88  E-value=1.7e-23  Score=220.71  Aligned_cols=107  Identities=20%  Similarity=0.183  Sum_probs=54.9

Q ss_pred             EECCCccccCccchhhhhCCCCCCEEEccCCCCCCcCc----ccccCCC-CCCEEEccccccCccccccccCC-----CC
Q 004704          221 LDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFF----SEYMNLT-RLRHLYFENNNFSGKIKDGLLSS-----TS  290 (735)
Q Consensus       221 L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~-~L~~L~L~~n~l~~~~~~~l~~~-----~~  290 (735)
                      ++++.|.+++.+|.. .....+|++|++++|.+++..+    ..+..++ +|++|++++|.+++..+..+..+     ++
T Consensus         3 ~~ls~n~~~~~~~~~-~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~   81 (362)
T 3goz_A            3 YKLTLHPGSNPVEEF-TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN   81 (362)
T ss_dssp             EECCCCTTCCHHHHH-HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred             cccccccchHHHHHH-HhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence            455666666444432 2334446666666666665444    4455555 56666666666554444444332     55


Q ss_pred             CCEEEeeCCccCCCCCchhhhh----cccCcEEEcCCCcCCC
Q 004704          291 LQVLDISNNMLSGHIPHWMGNF----SSELEILSMSKNHLEG  328 (735)
Q Consensus       291 L~~L~l~~n~l~~~~p~~~~~~----~~~L~~L~l~~n~l~~  328 (735)
                      |++|++++|.+++..+..+...    +.+|++|++++|++++
T Consensus        82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~  123 (362)
T 3goz_A           82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSS  123 (362)
T ss_dssp             CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGG
T ss_pred             ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCc
Confidence            6666666665554444433332    1125555555555543

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.88  E-value=3.7e-24  Score=228.29  Aligned_cols=241  Identities=18%  Similarity=0.246  Sum_probs=165.3

Q ss_pred             CCchhhhhcccCcEEEcCCCcCCCC----CCccCCCCCCCCEEEcccCCCC---ccCCCc--------cCCCCccEEEcc
Q 004704          305 IPHWMGNFSSELEILSMSKNHLEGN----VPVQLNNLERLRILDISENRLS---GPIASS--------LNLSSVEHLSLQ  369 (735)
Q Consensus       305 ~p~~~~~~~~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~---~~~~~~--------~~l~~L~~L~l~  369 (735)
                      ++..+..++. |+.|++++|.+.+.    ++..+..+++|++|++++|.+.   +.+|..        ..+++|++|+++
T Consensus        24 l~~~l~~~~~-L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls  102 (386)
T 2ca6_A           24 VFAVLLEDDS-VKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS  102 (386)
T ss_dssp             TSHHHHHCSC-CCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred             HHHHHhcCCC-ccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence            3344444443 55555555555433    2233555666666666664332   222211        246677777777


Q ss_pred             CCcccc----cCcccccCCCCCcEEeCCCCcccccCChhhh----CC---------CCccEEEccCCcCC-CCCc---hh
Q 004704          370 KNALNG----LIPGELFRSCKLVTLNLRDNTFSGRIPHQIN----EH---------SNLRFLLLGGNHLQ-GPIP---DQ  428 (735)
Q Consensus       370 ~n~l~~----~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~----~l---------~~L~~L~L~~n~l~-~~~~---~~  428 (735)
                      +|.+.+    .++..+..+++|++|++++|.+++..+..+.    .+         ++|++|++++|+++ +.++   ..
T Consensus       103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~  182 (386)
T 2ca6_A          103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT  182 (386)
T ss_dssp             SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred             CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHH
Confidence            777765    3566777788888888888888654443333    33         78999999999887 3344   46


Q ss_pred             hhcCCCCCEEECcCCcCCCC-----CCchhhcccccccccCCccCCCCCCCcccchhhhcccCCCCCCCccccchhhhhh
Q 004704          429 LCQLQKLAMMDLSRNKFSGS-----IPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLS  503 (735)
Q Consensus       429 ~~~l~~L~~L~Ls~N~l~~~-----~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  503 (735)
                      +..+++|+.|++++|+++..     .|..+                                                  
T Consensus       183 l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l--------------------------------------------------  212 (386)
T 2ca6_A          183 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGL--------------------------------------------------  212 (386)
T ss_dssp             HHHCTTCCEEECCSSCCCHHHHHHHHHTTG--------------------------------------------------
T ss_pred             HHhCCCcCEEECcCCCCCHhHHHHHHHHHh--------------------------------------------------
Confidence            77888999999999887621     11011                                                  


Q ss_pred             hhhhhhccccceeEEEEeccccccccCCcccccceEECCCCccc----CCCCccccccccCCeEeCCCCcCccc----Cc
Q 004704          504 ALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLT----GEIPSDIGQLQAILALNLSNNSLSGS----IP  575 (735)
Q Consensus       504 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~----~~~p~~l~~l~~L~~L~Ls~N~l~~~----~p  575 (735)
                                                 ..+++|+.|+|++|.++    +.+|..+..+++|+.|+|++|.+++.    +|
T Consensus       213 ---------------------------~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~  265 (386)
T 2ca6_A          213 ---------------------------AYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVV  265 (386)
T ss_dssp             ---------------------------GGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHH
T ss_pred             ---------------------------hcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHH
Confidence                                       12467888999999885    56788888999999999999999876    56


Q ss_pred             cccc--CcCCCCEEeCCCCcccc----cCCccc-cCCCCCCeEEcccCcCcccCC
Q 004704          576 ESFS--NLKMIESLDISYNKLTG----QIPPQL-TALNFLSIFNVSYNNLSGRTP  623 (735)
Q Consensus       576 ~~~~--~l~~L~~LdLs~N~l~~----~~p~~l-~~l~~L~~L~ls~N~l~~~~p  623 (735)
                      ..+.  .+++|+.|+|++|++++    .+|..+ .++++|++|++++|++++..|
T Consensus       266 ~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          266 DAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD  320 (386)
T ss_dssp             HHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred             HHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence            6663  48999999999999997    488877 668999999999999987664

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.87  E-value=6.3e-23  Score=214.53  Aligned_cols=249  Identities=18%  Similarity=0.228  Sum_probs=187.6

Q ss_pred             CCCEEEeeCCccCCCCCchhhhh--cccCcEEEcCCCcCCCCCCccCCCCCCCCEEEcccCCCCcc-CCCcc-CCCCccE
Q 004704          290 SLQVLDISNNMLSGHIPHWMGNF--SSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGP-IASSL-NLSSVEH  365 (735)
Q Consensus       290 ~L~~L~l~~n~l~~~~p~~~~~~--~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~~-~l~~L~~  365 (735)
                      .++.++++++.+.   +..+..+  .. ++.|++++|.+.+..+. +..+++|++|++++|.+++. ++..+ .+++|++
T Consensus        48 ~~~~l~l~~~~~~---~~~~~~~~~~~-l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~  122 (336)
T 2ast_B           48 LWQTLDLTGKNLH---PDVTGRLLSQG-VIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN  122 (336)
T ss_dssp             TSSEEECTTCBCC---HHHHHHHHHTT-CSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred             hheeeccccccCC---HHHHHhhhhcc-ceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence            4667777777665   3444444  44 88888888888766555 45688888888888887654 44434 7888999


Q ss_pred             EEccCCcccccCcccccCCCCCcEEeCCCC-ccccc-CChhhhCCCCccEEEccCC-cCCCC-CchhhhcCC-CCCEEEC
Q 004704          366 LSLQKNALNGLIPGELFRSCKLVTLNLRDN-TFSGR-IPHQINEHSNLRFLLLGGN-HLQGP-IPDQLCQLQ-KLAMMDL  440 (735)
Q Consensus       366 L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~-~L~~L~L  440 (735)
                      |++++|.+++..+..+..+++|++|++++| .+++. ++..+..+++|++|++++| .+++. ++..+..++ +|++|++
T Consensus       123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l  202 (336)
T 2ast_B          123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNL  202 (336)
T ss_dssp             EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEEC
T ss_pred             EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEe
Confidence            999999888777888888999999999999 67753 6677888999999999999 88754 577788899 9999999


Q ss_pred             cCCc--CC-CCCCchhhcccccccccCCccCCCCCCCcccchhhhcccCCCCCCCccccchhhhhhhhhhhhccccceeE
Q 004704          441 SRNK--FS-GSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEI  517 (735)
Q Consensus       441 s~N~--l~-~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  517 (735)
                      ++|.  ++ +.+|..+.                                                               
T Consensus       203 ~~~~~~~~~~~l~~~~~---------------------------------------------------------------  219 (336)
T 2ast_B          203 SGYRKNLQKSDLSTLVR---------------------------------------------------------------  219 (336)
T ss_dssp             CSCGGGSCHHHHHHHHH---------------------------------------------------------------
T ss_pred             CCCcccCCHHHHHHHHh---------------------------------------------------------------
Confidence            9994  43 12222211                                                               


Q ss_pred             EEEeccccccccCCcccccceEECCCCc-ccCCCCccccccccCCeEeCCCCc-CcccCcccccCcCCCCEEeCCCCccc
Q 004704          518 EFAMKNRYEIYNGSNVNRVTGLDLSCNQ-LTGEIPSDIGQLQAILALNLSNNS-LSGSIPESFSNLKMIESLDISYNKLT  595 (735)
Q Consensus       518 ~~~~~~~~~~~~~~~l~~L~~LdLs~N~-l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~LdLs~N~l~  595 (735)
                                    .+++|+.|++++|. +++..+..++.+++|+.|++++|. ++......++++++|+.|++++| ++
T Consensus       220 --------------~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~  284 (336)
T 2ast_B          220 --------------RCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VP  284 (336)
T ss_dssp             --------------HCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SC
T ss_pred             --------------hCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cC
Confidence                          23678899999999 777788889999999999999995 33222236889999999999999 33


Q ss_pred             ccCCccccCCC-CCCeEEcccCcCcccCCC
Q 004704          596 GQIPPQLTALN-FLSIFNVSYNNLSGRTPD  624 (735)
Q Consensus       596 ~~~p~~l~~l~-~L~~L~ls~N~l~~~~p~  624 (735)
                      .   ..+..+. .+..|++++|++++..|.
T Consensus       285 ~---~~~~~l~~~l~~L~l~~n~l~~~~~~  311 (336)
T 2ast_B          285 D---GTLQLLKEALPHLQINCSHFTTIARP  311 (336)
T ss_dssp             T---TCHHHHHHHSTTSEESCCCSCCTTCS
T ss_pred             H---HHHHHHHhhCcceEEecccCccccCC
Confidence            2   2344442 477778999999998885

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.87  E-value=4.8e-22  Score=204.93  Aligned_cols=133  Identities=14%  Similarity=0.125  Sum_probs=73.4

Q ss_pred             CCCCEEEeeCCccCCCCCc---hhhhhcccCcEEEcCCCcCCCCCCccC--CCCCCCCEEEcccCCCCccCCCc-----c
Q 004704          289 TSLQVLDISNNMLSGHIPH---WMGNFSSELEILSMSKNHLEGNVPVQL--NNLERLRILDISENRLSGPIASS-----L  358 (735)
Q Consensus       289 ~~L~~L~l~~n~l~~~~p~---~~~~~~~~L~~L~l~~n~l~~~~~~~l--~~l~~L~~L~L~~n~l~~~~~~~-----~  358 (735)
                      ..++.+.+.++.++...-.   .....+. |++|++++|.+.+..|..+  ..+++|++|++++|.+.+..+..     .
T Consensus        64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~  142 (310)
T 4glp_A           64 LRVRRLTVGAAQVPAQLLVGALRVLAYSR-LKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW  142 (310)
T ss_dssp             CCCCEEEECSCCCBHHHHHHHHHHHHHSC-CCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred             cceeEEEEeCCcCCHHHHHHHHHhcccCc-eeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence            3466677766655421100   1122334 8888888888877777776  77788888888888777543321     1


Q ss_pred             CCCCccEEEccCCcccccCcccccCCCCCcEEeCCCCccccc--C--ChhhhCCCCccEEEccCCcCC
Q 004704          359 NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGR--I--PHQINEHSNLRFLLLGGNHLQ  422 (735)
Q Consensus       359 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~--~--~~~~~~l~~L~~L~L~~n~l~  422 (735)
                      .+++|++|++++|.+.+..+..+..+++|++|++++|++.+.  +  +..++.+++|++|++++|.++
T Consensus       143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~  210 (310)
T 4glp_A          143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME  210 (310)
T ss_dssp             BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC
T ss_pred             hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC
Confidence            355555555555555555555555555555555555554421  1  112234444444444444443

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.87  E-value=1.4e-21  Score=193.38  Aligned_cols=79  Identities=22%  Similarity=0.206  Sum_probs=44.5

Q ss_pred             cccc-eEECCCCcccCCCCccccccccCCeEeCCCCc-CcccCcccccCc-CCCCEEeCCCCcccccCCccccCCCCCCe
Q 004704          534 NRVT-GLDLSCNQLTGEIPSDIGQLQAILALNLSNNS-LSGSIPESFSNL-KMIESLDISYNKLTGQIPPQLTALNFLSI  610 (735)
Q Consensus       534 ~~L~-~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~~~~l-~~L~~LdLs~N~l~~~~p~~l~~l~~L~~  610 (735)
                      ++|+ .|++++|+++ .+|......++|+.|++++|+ +++..+..|.++ ++|+.||+++|++++ +|..  .+++|+.
T Consensus       155 ~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~  230 (239)
T 2xwt_C          155 CNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKE  230 (239)
T ss_dssp             BSSEEEEECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSE
T ss_pred             hcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCce
Confidence            3445 5566666555 333332222566666666663 665555566666 666666666666663 3332  4556666


Q ss_pred             EEcccC
Q 004704          611 FNVSYN  616 (735)
Q Consensus       611 L~ls~N  616 (735)
                      |+++++
T Consensus       231 L~l~~~  236 (239)
T 2xwt_C          231 LIARNT  236 (239)
T ss_dssp             EECTTC
T ss_pred             eeccCc
Confidence            666554

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.86  E-value=2.1e-22  Score=210.54  Aligned_cols=255  Identities=19%  Similarity=0.176  Sum_probs=126.7

Q ss_pred             CCCEEeCCCCcCCCCcchhhhCC--CCCCEEeCCCCcccccCChhhhhcCCCCCeeecccccccccccCCCCCCCCCeeE
Q 004704           21 RLKILDISSNQLNGSLPSVISNL--TSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIV   98 (735)
Q Consensus        21 ~L~~L~Ls~n~i~~~~p~~~~~l--~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~   98 (735)
                      .++.+|+++|.+.   |..+..+  +++++|++++|.+.+..+.  +.++++|++|++++|.                  
T Consensus        48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~--~~~~~~L~~L~L~~~~------------------  104 (336)
T 2ast_B           48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE--HFSPFRVQHMDLSNSV------------------  104 (336)
T ss_dssp             TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS--CCCCBCCCEEECTTCE------------------
T ss_pred             hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh--hccCCCCCEEEccCCC------------------
Confidence            3567777776665   4555555  6677777777776655441  3345555555555544                  


Q ss_pred             EEeeCCCCCCC-CchhhhCCCCCCEEEccCCcCcccCchHHHhCCCCCcEEECcCC-cCccc-CcCCcCCCCCcCEEEcc
Q 004704           99 LGLTKCNLNGS-YPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNN-SFSGI-LQLPKAKHDFLHHLDIS  175 (735)
Q Consensus        99 L~L~~n~l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~~~~L~~L~Ls  175 (735)
                             +++. ++..+..+++|++|++++|.+++..+..+. .+++|++|++++| .+++. .+..+..+++|++|+++
T Consensus       105 -------l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~-~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~  176 (336)
T 2ast_B          105 -------IEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLA-KNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLS  176 (336)
T ss_dssp             -------ECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHT-TCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECC
T ss_pred             -------cCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHh-cCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCC
Confidence                   4332 344444455555555555544433443332 3455555555555 34331 22233444555555555


Q ss_pred             CC-cCCCc-CChhHHHhcc-cCcEEECcCC--cCC-CCCCcccCCCCCCCEEECCCcc-ccCccchhhhhCCCCCCEEEc
Q 004704          176 CN-NFRGK-LPHNMGVILQ-KLMYMDISKN--CFE-GNIPYSAGEMKELSLLDLSRNY-FSGGLSQSVVTGCFSLELLDL  248 (735)
Q Consensus       176 ~n-~l~~~-~~~~~~~~l~-~L~~L~L~~n--~l~-~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~L  248 (735)
                      +| .+++. ++..+. .++ +|++|++++|  .++ +.+|..+..+++|++|++++|. +++..+..+ ..+++|++|++
T Consensus       177 ~~~~l~~~~~~~~~~-~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l-~~l~~L~~L~l  254 (336)
T 2ast_B          177 WCFDFTEKHVQVAVA-HVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEF-FQLNYLQHLSL  254 (336)
T ss_dssp             CCTTCCHHHHHHHHH-HSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGG-GGCTTCCEEEC
T ss_pred             CCCCcChHHHHHHHH-hcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHH-hCCCCCCEeeC
Confidence            55 44422 222222 245 5555555555  232 2334444455566666666655 443333332 34566666666


Q ss_pred             cCCC-CCCcCcccccCCCCCCEEEccccccCccccccccCCCCCCEEEeeCCccCCCCCchhhh
Q 004704          249 SNNN-FEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGN  311 (735)
Q Consensus       249 ~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~  311 (735)
                      ++|. +.......+..+++|+.|++++| ++......+.  ..++.|++++|.+++..|..++.
T Consensus       255 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~--~~l~~L~l~~n~l~~~~~~~~~~  315 (336)
T 2ast_B          255 SRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLK--EALPHLQINCSHFTTIARPTIGN  315 (336)
T ss_dssp             TTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHH--HHSTTSEESCCCSCCTTCSSCSS
T ss_pred             CCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHHH--hhCcceEEecccCccccCCcccc
Confidence            6663 22222224556666666666666 3322111111  23455556777777666665543

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.86  E-value=4.2e-23  Score=220.06  Aligned_cols=247  Identities=18%  Similarity=0.260  Sum_probs=145.4

Q ss_pred             cCChhHHHhcccCcEEECcCCcCCCC----CCcccCCCCCCCEEECCCcc---ccCccchhh------hhCCCCCCEEEc
Q 004704          182 KLPHNMGVILQKLMYMDISKNCFEGN----IPYSAGEMKELSLLDLSRNY---FSGGLSQSV------VTGCFSLELLDL  248 (735)
Q Consensus       182 ~~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~---l~~~~~~~~------~~~l~~L~~L~L  248 (735)
                      .++..+.. +++|++|++++|.+.+.    ++..+..+++|++|++++|.   +++.+|..+      +..+++|++|++
T Consensus        23 ~l~~~l~~-~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~L  101 (386)
T 2ca6_A           23 SVFAVLLE-DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRL  101 (386)
T ss_dssp             TTSHHHHH-CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEEC
T ss_pred             HHHHHHhc-CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEEC
Confidence            34444443 56677777777766543    22335566667777666643   333334333      234455555555


Q ss_pred             cCCCCCC----cCcccccCCCCCCEEEccccccCccccccccCCCCCCEEEeeCCccCCCCCchhhhh---------ccc
Q 004704          249 SNNNFEG----QFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNF---------SSE  315 (735)
Q Consensus       249 ~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~---------~~~  315 (735)
                      ++|.+.+    .++..+..+++|++|++++|.++...+..+.                    ..+..+         +. 
T Consensus       102 s~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~--------------------~~l~~l~~~~~~~~~~~-  160 (386)
T 2ca6_A          102 SDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIA--------------------RALQELAVNKKAKNAPP-  160 (386)
T ss_dssp             CSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHH--------------------HHHHHHHHHHHHHTCCC-
T ss_pred             CCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHH--------------------HHHHHHhhhhhcccCCC-
Confidence            5555544    2333444444444444444444322221111                    111111         33 


Q ss_pred             CcEEEcCCCcCC-CCCC---ccCCCCCCCCEEEcccCCCCc-----cCC-CccCCCCccEEEccCCccc----ccCcccc
Q 004704          316 LEILSMSKNHLE-GNVP---VQLNNLERLRILDISENRLSG-----PIA-SSLNLSSVEHLSLQKNALN----GLIPGEL  381 (735)
Q Consensus       316 L~~L~l~~n~l~-~~~~---~~l~~l~~L~~L~L~~n~l~~-----~~~-~~~~l~~L~~L~l~~n~l~----~~~~~~~  381 (735)
                      |++|++++|+++ +.++   ..+..+++|++|++++|.+..     ..+ ....+++|+.|++++|.++    +.+|..+
T Consensus       161 L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l  240 (386)
T 2ca6_A          161 LRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIAL  240 (386)
T ss_dssp             CCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHG
T ss_pred             CcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHH
Confidence            666666666554 2222   244455666666666666652     222 2226677777777777775    4566777


Q ss_pred             cCCCCCcEEeCCCCccccc----CChhhhC--CCCccEEEccCCcCCC----CCchhh-hcCCCCCEEECcCCcCCCCCC
Q 004704          382 FRSCKLVTLNLRDNTFSGR----IPHQINE--HSNLRFLLLGGNHLQG----PIPDQL-CQLQKLAMMDLSRNKFSGSIP  450 (735)
Q Consensus       382 ~~~~~L~~L~l~~n~l~~~----~~~~~~~--l~~L~~L~L~~n~l~~----~~~~~~-~~l~~L~~L~Ls~N~l~~~~p  450 (735)
                      ..+++|+.|++++|.+++.    ++..+..  +++|++|+|++|.+++    .+|..+ .++++|+.|++++|++++..+
T Consensus       241 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          241 KSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD  320 (386)
T ss_dssp             GGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred             ccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence            8888888999998888765    4566643  8889999999999886    367766 668999999999999886664

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.86  E-value=9.2e-21  Score=188.86  Aligned_cols=179  Identities=21%  Similarity=0.236  Sum_probs=135.7

Q ss_pred             CCEEEcccCCCCccCCCccCCCCccEEEccCCcccccCcccccCCCCCcEEeCCCCcccccCChhhhCCCCccEEEccCC
Q 004704          340 LRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGN  419 (735)
Q Consensus       340 L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n  419 (735)
                      .++++++++.++..+...  .+.++.|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|
T Consensus        16 ~~~l~~~~~~l~~~p~~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n   93 (251)
T 3m19_A           16 KKEVDCQGKSLDSVPSGI--PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN   93 (251)
T ss_dssp             GTEEECTTCCCSSCCSCC--CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred             CeEEecCCCCccccCCCC--CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC
Confidence            344444444444332221  135666666666666666666777778888888888888777777788888888888888


Q ss_pred             cCCCCCchhhhcCCCCCEEECcCCcCCCCCCchhhcccccccccCCccCCCCCCCcccchhhhcccCCCCCCCccccchh
Q 004704          420 HLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMW  499 (735)
Q Consensus       420 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  499 (735)
                      .+++..+..|..+++|++|++++|++++..+..+..                                            
T Consensus        94 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~--------------------------------------------  129 (251)
T 3m19_A           94 QLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDR--------------------------------------------  129 (251)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT--------------------------------------------
T ss_pred             cccccChhHhcccCCCCEEEcCCCcCCCcChhHhcc--------------------------------------------
Confidence            888777777888888888888888887554443333                                            


Q ss_pred             hhhhhhhhhhccccceeEEEEeccccccccCCcccccceEECCCCcccCCCCccccccccCCeEeCCCCcCcccCccccc
Q 004704          500 RWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFS  579 (735)
Q Consensus       500 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~  579 (735)
                                                       +++|+.|+|++|++++..+..|+.+++|++|+|++|++++..+..|.
T Consensus       130 ---------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~  176 (251)
T 3m19_A          130 ---------------------------------LTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFD  176 (251)
T ss_dssp             ---------------------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTT
T ss_pred             ---------------------------------CCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHh
Confidence                                             35678899999999876666899999999999999999988888899


Q ss_pred             CcCCCCEEeCCCCccccc
Q 004704          580 NLKMIESLDISYNKLTGQ  597 (735)
Q Consensus       580 ~l~~L~~LdLs~N~l~~~  597 (735)
                      .+++|+.|+|++|++++.
T Consensus       177 ~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          177 RLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             TCTTCCEEECCSCCBCTT
T ss_pred             CCCCCCEEEeeCCceeCC
Confidence            999999999999999865

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.86  E-value=1.5e-21  Score=201.31  Aligned_cols=226  Identities=17%  Similarity=0.159  Sum_probs=158.8

Q ss_pred             CCCCEEEccCCcCccc----CchHHHhCCCCCcEEECcCCcCcccCcCCc--CCCCCcCEEEccCCcCCCcCC----hhH
Q 004704          118 YHLKYLDLSHNKLVGN----FPTWLLRNNPKLEVLLLKNNSFSGILQLPK--AKHDFLHHLDISCNNFRGKLP----HNM  187 (735)
Q Consensus       118 ~~L~~L~Ls~n~l~~~----~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~~~~L~~L~Ls~n~l~~~~~----~~~  187 (735)
                      ..++.+++.++.++..    ++...  .+++|++|++++|.+++..+..+  ..+++|++|++++|.+++..+    ..+
T Consensus        64 ~~l~~l~l~~~~~~~~~~~~~~~~~--~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~  141 (310)
T 4glp_A           64 LRVRRLTVGAAQVPAQLLVGALRVL--AYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQ  141 (310)
T ss_dssp             CCCCEEEECSCCCBHHHHHHHHHHH--HHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHT
T ss_pred             cceeEEEEeCCcCCHHHHHHHHHhc--ccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHh
Confidence            3467777777666422    11111  34668888888888888877777  788888889999888886554    222


Q ss_pred             HHhcccCcEEECcCCcCCCCCCcccCCCCCCCEEECCCccccCc--cc-hhhhhCCCCCCEEEccCCCCCCcCc--c-cc
Q 004704          188 GVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGG--LS-QSVVTGCFSLELLDLSNNNFEGQFF--S-EY  261 (735)
Q Consensus       188 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~--~~-~~~~~~l~~L~~L~L~~n~l~~~~~--~-~~  261 (735)
                      . .+++|++|++++|.+.+..+..+..+++|++|++++|++.+.  ++ ...+..+++|++|++++|.++....  . .+
T Consensus       142 ~-~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~  220 (310)
T 4glp_A          142 W-LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALA  220 (310)
T ss_dssp             T-BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHH
T ss_pred             h-hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHH
Confidence            3 477899999999999877778888899999999999987642  22 2223467788888888888863221  1 24


Q ss_pred             cCCCCCCEEEccccccCccccccccCC---CCCCEEEeeCCccCCCCCchhhhhcccCcEEEcCCCcCCCCCCccCCCCC
Q 004704          262 MNLTRLRHLYFENNNFSGKIKDGLLSS---TSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLE  338 (735)
Q Consensus       262 ~~l~~L~~L~L~~n~l~~~~~~~l~~~---~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~  338 (735)
                      ..+++|++|++++|++++..|..+..+   ++|++|++++|+++ .+|..+.  + +|++|++++|++++. |. +..++
T Consensus       221 ~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~-~L~~L~Ls~N~l~~~-~~-~~~l~  294 (310)
T 4glp_A          221 AAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--A-KLRVLDLSSNRLNRA-PQ-PDELP  294 (310)
T ss_dssp             HHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--S-CCSCEECCSCCCCSC-CC-TTSCC
T ss_pred             hcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--C-CCCEEECCCCcCCCC-ch-hhhCC
Confidence            667888888888888886666666555   57888888888887 6676553  3 378888888877753 32 56667


Q ss_pred             CCCEEEcccCCCCc
Q 004704          339 RLRILDISENRLSG  352 (735)
Q Consensus       339 ~L~~L~L~~n~l~~  352 (735)
                      +|+.|++++|+++.
T Consensus       295 ~L~~L~L~~N~l~~  308 (310)
T 4glp_A          295 EVDNLTLDGNPFLV  308 (310)
T ss_dssp             CCSCEECSSTTTSC
T ss_pred             CccEEECcCCCCCC
Confidence            77777777777653

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.86  E-value=6.2e-21  Score=196.05  Aligned_cols=192  Identities=19%  Similarity=0.329  Sum_probs=115.1

Q ss_pred             CCCCCEEEcccCCCCccCCCccCCCCccEEEccCCcccccCcccccCCCCCcEEeCCCCcccccCChhhhCCCCccEEEc
Q 004704          337 LERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLL  416 (735)
Q Consensus       337 l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L  416 (735)
                      +++|++|++++|.+... +....+++|++|++++|.+.+..+  +..+++|++|++++|++++ ++ .+..+++|++|++
T Consensus        40 l~~L~~L~l~~~~i~~l-~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~l  114 (308)
T 1h6u_A           40 LDGITTLSAFGTGVTTI-EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN-VS-AIAGLQSIKTLDL  114 (308)
T ss_dssp             HHTCCEEECTTSCCCCC-TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEEEC
T ss_pred             cCCcCEEEeeCCCccCc-hhhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCC-ch-hhcCCCCCCEEEC
Confidence            44455555555544432 222245555555555555554322  5566666666666666653 22 4666666666666


Q ss_pred             cCCcCCCCCchhhhcCCCCCEEECcCCcCCCCCCchhhcccccccccCCccCCCCCCCcccchhhhcccCCCCCCCcccc
Q 004704          417 GGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMF  496 (735)
Q Consensus       417 ~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  496 (735)
                      ++|.+++ ++. +..+++|+.|++++|++++..+  +.                                          
T Consensus       115 ~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~--l~------------------------------------------  148 (308)
T 1h6u_A          115 TSTQITD-VTP-LAGLSNLQVLYLDLNQITNISP--LA------------------------------------------  148 (308)
T ss_dssp             TTSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG--GG------------------------------------------
T ss_pred             CCCCCCC-chh-hcCCCCCCEEECCCCccCcCcc--cc------------------------------------------
Confidence            6666664 332 6666677777777776653221  11                                          


Q ss_pred             chhhhhhhhhhhhccccceeEEEEeccccccccCCcccccceEECCCCcccCCCCccccccccCCeEeCCCCcCcccCcc
Q 004704          497 GMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPE  576 (735)
Q Consensus       497 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~  576 (735)
                                                         .+++|+.|++++|++++ ++. +..+++|+.|++++|++++..+ 
T Consensus       149 -----------------------------------~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~-  190 (308)
T 1h6u_A          149 -----------------------------------GLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNKISDISP-  190 (308)
T ss_dssp             -----------------------------------GCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG-
T ss_pred             -----------------------------------CCCCccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCccCcChh-
Confidence                                               12456667777777764 333 6677777777777777775433 


Q ss_pred             cccCcCCCCEEeCCCCcccccCCccccCCCCCCeEEcccCcCcc
Q 004704          577 SFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSG  620 (735)
Q Consensus       577 ~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~  620 (735)
                       +..+++|++|+|++|++++..|  +..+++|+.|++++|++++
T Consensus       191 -l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          191 -LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             -GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred             -hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence             6777777777777777775442  6777777777777777765

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.85  E-value=8.2e-21  Score=195.12  Aligned_cols=197  Identities=21%  Similarity=0.348  Sum_probs=136.9

Q ss_pred             hhcccCcEEEcCCCcCCCCCCccCCCCCCCCEEEcccCCCCccCCCccCCCCccEEEccCCcccccCcccccCCCCCcEE
Q 004704          311 NFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTL  390 (735)
Q Consensus       311 ~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L  390 (735)
                      .++. |++|++++|.+.. ++ .+..+++|++|++++|.+.+..+ ...+++|++|++++|.+++.  +.+..+++|++|
T Consensus        39 ~l~~-L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L  112 (308)
T 1h6u_A           39 DLDG-ITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNV--SAIAGLQSIKTL  112 (308)
T ss_dssp             HHHT-CCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEE
T ss_pred             HcCC-cCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEE
Confidence            3444 6666666665553 22 35556666666666666655444 33566666666666666643  256777788888


Q ss_pred             eCCCCcccccCChhhhCCCCccEEEccCCcCCCCCchhhhcCCCCCEEECcCCcCCCCCCchhhcccccccccCCccCCC
Q 004704          391 NLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGS  470 (735)
Q Consensus       391 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~  470 (735)
                      ++++|++++ ++ .+..+++|++|++++|.+++..+  +..+++|+.|++++|++++..+  +.                
T Consensus       113 ~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~----------------  170 (308)
T 1h6u_A          113 DLTSTQITD-VT-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LA----------------  170 (308)
T ss_dssp             ECTTSCCCC-CG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GT----------------
T ss_pred             ECCCCCCCC-ch-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hc----------------
Confidence            888888874 33 37778888888888888875433  7788888888888888874222  22                


Q ss_pred             CCCCcccchhhhcccCCCCCCCccccchhhhhhhhhhhhccccceeEEEEeccccccccCCcccccceEECCCCcccCCC
Q 004704          471 KLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEI  550 (735)
Q Consensus       471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~  550 (735)
                                                                                   .+++|+.|++++|++++. 
T Consensus       171 -------------------------------------------------------------~l~~L~~L~l~~n~l~~~-  188 (308)
T 1h6u_A          171 -------------------------------------------------------------NLSKLTTLKADDNKISDI-  188 (308)
T ss_dssp             -------------------------------------------------------------TCTTCCEEECCSSCCCCC-
T ss_pred             -------------------------------------------------------------CCCCCCEEECCCCccCcC-
Confidence                                                                         235678888888888854 


Q ss_pred             CccccccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccCCcc
Q 004704          551 PSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQ  601 (735)
Q Consensus       551 p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~  601 (735)
                      +. +..+++|+.|+|++|++++..|  +..+++|+.|+|++|++++ .|..
T Consensus       189 ~~-l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~-~~~~  235 (308)
T 1h6u_A          189 SP-LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN-QPVF  235 (308)
T ss_dssp             GG-GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC-CCEE
T ss_pred             hh-hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec-CCee
Confidence            33 8888999999999999986553  8899999999999999984 4443

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.85  E-value=5.9e-21  Score=188.85  Aligned_cols=178  Identities=16%  Similarity=0.179  Sum_probs=89.6

Q ss_pred             CCCEEECCCccccCccchhhhhCCCCCCEEEccCCC-CCCcCcccccCCCCCCEEEccc-cccCccccccccCCCCCCEE
Q 004704          217 ELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNN-FEGQFFSEYMNLTRLRHLYFEN-NNFSGKIKDGLLSSTSLQVL  294 (735)
Q Consensus       217 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~l~~~~~L~~L  294 (735)
                      +|++|++++|+++ .++...+.++++|++|++++|. ++...+..|.++++|++|++++ |.+++..+..|..+++|++|
T Consensus        32 ~l~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L  110 (239)
T 2xwt_C           32 STQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL  110 (239)
T ss_dssp             TCCEEEEESCCCS-EECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred             cccEEEEeCCcce-EECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence            4555555555554 3343334455555555555554 5444444555566666666665 55554444555566666666


Q ss_pred             EeeCCccCCCCCchhhhhcccCc---EEEcCCC-cCCCCCCccCCCCCCCC-EEEcccCCCCccCCCccCCCCccEEEcc
Q 004704          295 DISNNMLSGHIPHWMGNFSSELE---ILSMSKN-HLEGNVPVQLNNLERLR-ILDISENRLSGPIASSLNLSSVEHLSLQ  369 (735)
Q Consensus       295 ~l~~n~l~~~~p~~~~~~~~~L~---~L~l~~n-~l~~~~~~~l~~l~~L~-~L~L~~n~l~~~~~~~~~l~~L~~L~l~  369 (735)
                      ++++|.+++ +|. +..+.. |+   .|++++| ++++..+..|.++++|+ +|++++|+++...+..+..++|+.|+++
T Consensus       111 ~l~~n~l~~-lp~-~~~l~~-L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~  187 (239)
T 2xwt_C          111 GIFNTGLKM-FPD-LTKVYS-TDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLN  187 (239)
T ss_dssp             EEEEECCCS-CCC-CTTCCB-CCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECT
T ss_pred             eCCCCCCcc-ccc-cccccc-cccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcC
Confidence            666666652 444 444443 54   5666665 55544444555556666 6666655555333333322444444444


Q ss_pred             CCc-ccccCcccccCC-CCCcEEeCCCCccc
Q 004704          370 KNA-LNGLIPGELFRS-CKLVTLNLRDNTFS  398 (735)
Q Consensus       370 ~n~-l~~~~~~~~~~~-~~L~~L~l~~n~l~  398 (735)
                      +|+ +++..+..|..+ ++|+.|++++|+++
T Consensus       188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~  218 (239)
T 2xwt_C          188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT  218 (239)
T ss_dssp             TCTTCCEECTTTTTTCSBCCSEEECTTCCCC
T ss_pred             CCCCcccCCHHHhhccccCCcEEECCCCccc
Confidence            442 443333333343 44444444444443

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.84  E-value=5.4e-20  Score=192.90  Aligned_cols=239  Identities=15%  Similarity=0.147  Sum_probs=173.4

Q ss_pred             CEEEeeCCccCCCCCchhhhhcccCcEEEcCCCcCCCCCCccCCCCCCCCEEEcccCCCCccCC-Ccc-CCCCccE-EEc
Q 004704          292 QVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIA-SSL-NLSSVEH-LSL  368 (735)
Q Consensus       292 ~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~-~l~~L~~-L~l  368 (735)
                      ++++.++++++ .+|..+   +.++++|++++|+|+...+.+|.++++|++|+|++|++.+.++ ..+ +++++++ +.+
T Consensus        12 ~~v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~   87 (350)
T 4ay9_X           12 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   87 (350)
T ss_dssp             TEEEEESTTCC-SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred             CEEEecCCCCC-ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence            56777888887 777655   3458888888888886666678889999999999998866554 344 6777665 566


Q ss_pred             cCCcccccCcccccCCCCCcEEeCCCCcccccCChhhhCCCCccEEEccC-CcCCCCCchhhhcCC-CCCEEECcCCcCC
Q 004704          369 QKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGG-NHLQGPIPDQLCQLQ-KLAMMDLSRNKFS  446 (735)
Q Consensus       369 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~-~L~~L~Ls~N~l~  446 (735)
                      ..|+++...|+.|..+++|++|++++|++++..+..+....++..+++.+ +.+....+..|..+. .++.|++++|+++
T Consensus        88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~  167 (350)
T 4ay9_X           88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ  167 (350)
T ss_dssp             EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred             cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc
Confidence            67888888888888899999999999998866666666677788888865 566655555666664 5888999999987


Q ss_pred             CCCCchhhcccccccccCCccCCCCCCCcccchhhhcccCCCCCCCccccchhhhhhhhhhhhccccceeEEEEeccccc
Q 004704          447 GSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYE  526 (735)
Q Consensus       447 ~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  526 (735)
                      ...+..+.                                                                        
T Consensus       168 ~i~~~~f~------------------------------------------------------------------------  175 (350)
T 4ay9_X          168 EIHNSAFN------------------------------------------------------------------------  175 (350)
T ss_dssp             EECTTSST------------------------------------------------------------------------
T ss_pred             CCChhhcc------------------------------------------------------------------------
Confidence            43332221                                                                        


Q ss_pred             cccCCcccccceEECCC-CcccCCCC-ccccccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccCCccccC
Q 004704          527 IYNGSNVNRVTGLDLSC-NQLTGEIP-SDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTA  604 (735)
Q Consensus       527 ~~~~~~l~~L~~LdLs~-N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~  604 (735)
                            ..+++.+++++ |.++ .+| ..|+.+++|++|+|++|+|+...+..|.   +|+.|...++.--..+| .+.+
T Consensus       176 ------~~~L~~l~l~~~n~l~-~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~---~L~~L~~l~~~~l~~lP-~l~~  244 (350)
T 4ay9_X          176 ------GTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIHSLPSYGLE---NLKKLRARSTYNLKKLP-TLEK  244 (350)
T ss_dssp             ------TEEEEEEECTTCTTCC-CCCTTTTTTEECCSEEECTTSCCCCCCSSSCT---TCCEEECTTCTTCCCCC-CTTT
T ss_pred             ------ccchhHHhhccCCccc-CCCHHHhccCcccchhhcCCCCcCccChhhhc---cchHhhhccCCCcCcCC-Cchh
Confidence                  13577788875 5666 555 5678999999999999999955554444   45555555544344677 4788


Q ss_pred             CCCCCeEEcccCc
Q 004704          605 LNFLSIFNVSYNN  617 (735)
Q Consensus       605 l~~L~~L~ls~N~  617 (735)
                      +++|+.++++++.
T Consensus       245 l~~L~~l~l~~~~  257 (350)
T 4ay9_X          245 LVALMEASLTYPS  257 (350)
T ss_dssp             CCSCCEEECSCHH
T ss_pred             CcChhhCcCCCCc
Confidence            9999999998764

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.83  E-value=2.6e-20  Score=195.34  Aligned_cols=241  Identities=14%  Similarity=0.099  Sum_probs=163.1

Q ss_pred             CEEeCCCCcCCCCcchhhhCCCCCCEEeCCCCcccccCChhhhhcCCCCCeeecccccccccccCCCCCCCCCeeE-EEe
Q 004704           23 KILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIV-LGL  101 (735)
Q Consensus        23 ~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~-L~L  101 (735)
                      ++++-++++++ .+|..+  .+++++|+|++|+|+ .+|..+|.++++|++|+|++|.+...++..+|..++++++ +.+
T Consensus        12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~   87 (350)
T 4ay9_X           12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   87 (350)
T ss_dssp             TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred             CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence            45666666666 455544  246677777777765 4554566777777777777766666666666666666554 555


Q ss_pred             eCCCCCCCCchhhhCCCCCCEEEccCCcCcccCchHHHhCCCCCcEEECcC-CcCcccCcCCcCCCC-CcCEEEccCCcC
Q 004704          102 TKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKN-NSFSGILQLPKAKHD-FLHHLDISCNNF  179 (735)
Q Consensus       102 ~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~~~-~L~~L~Ls~n~l  179 (735)
                      .+|+++...|.+|..+++|++|++++|+++ .+|...+....++..+++.+ +.+..+.+..|..+. .++.|++++|++
T Consensus        88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i  166 (350)
T 4ay9_X           88 KANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI  166 (350)
T ss_dssp             EETTCCEECTTSBCCCTTCCEEEEEEECCS-SCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC
T ss_pred             cCCcccccCchhhhhccccccccccccccc-cCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccc
Confidence            667777777777888888888888888887 45544444556677777754 566666666666554 577888888888


Q ss_pred             CCcCChhHHHhcccCcEEECcC-CcCCCCCC-cccCCCCCCCEEECCCccccCccchhhhhCCCCCCEEEccCCCCCCcC
Q 004704          180 RGKLPHNMGVILQKLMYMDISK-NCFEGNIP-YSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQF  257 (735)
Q Consensus       180 ~~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~  257 (735)
                      + .+|..++. ..+|+++++++ |.++ .+| ..|..+++|++|++++|+++ .+|...   +.+|+.|.+.++.--..+
T Consensus       167 ~-~i~~~~f~-~~~L~~l~l~~~n~l~-~i~~~~f~~l~~L~~LdLs~N~l~-~lp~~~---~~~L~~L~~l~~~~l~~l  239 (350)
T 4ay9_X          167 Q-EIHNSAFN-GTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIH-SLPSYG---LENLKKLRARSTYNLKKL  239 (350)
T ss_dssp             C-EECTTSST-TEEEEEEECTTCTTCC-CCCTTTTTTEECCSEEECTTSCCC-CCCSSS---CTTCCEEECTTCTTCCCC
T ss_pred             c-CCChhhcc-ccchhHHhhccCCccc-CCCHHHhccCcccchhhcCCCCcC-ccChhh---hccchHhhhccCCCcCcC
Confidence            7 67777766 45788888875 4555 455 45788888888888888887 677643   456667766554433345


Q ss_pred             cccccCCCCCCEEEccccc
Q 004704          258 FSEYMNLTRLRHLYFENNN  276 (735)
Q Consensus       258 ~~~~~~l~~L~~L~L~~n~  276 (735)
                      | .+..+++|+.+++.++.
T Consensus       240 P-~l~~l~~L~~l~l~~~~  257 (350)
T 4ay9_X          240 P-TLEKLVALMEASLTYPS  257 (350)
T ss_dssp             C-CTTTCCSCCEEECSCHH
T ss_pred             C-CchhCcChhhCcCCCCc
Confidence            4 47788889998887653

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.81  E-value=2.4e-19  Score=197.48  Aligned_cols=188  Identities=22%  Similarity=0.370  Sum_probs=130.2

Q ss_pred             cCcEEEcCCCcCCCCCCccCCCCCCCCEEEcccCCCCccCCCccCCCCccEEEccCCcccccCcccccCCCCCcEEeCCC
Q 004704          315 ELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRD  394 (735)
Q Consensus       315 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~  394 (735)
                      +++.|++++|.+++ +|..+.  ++|++|++++|+++.. |  ..+++|+.|++++|.+++ +|. +..  +|+.|++++
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~~i-p--~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~  129 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALISL-P--ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDN  129 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCSCC-C--CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCS
T ss_pred             CccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCccc-c--cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCC
Confidence            38888888888886 555442  6788888888888743 3  346778888888888876 455 443  788888888


Q ss_pred             CcccccCChhhhCCCCccEEEccCCcCCCCCchhhhcCCCCCEEECcCCcCCCCCCchhhcccccccccCCccCCCCCCC
Q 004704          395 NTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNS  474 (735)
Q Consensus       395 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~  474 (735)
                      |++++ +|.   .+++|+.|++++|.+++ +|.   .+++|+.|++++|++++ +|. +.                    
T Consensus       130 N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--------------------  179 (571)
T 3cvr_A          130 NQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--------------------  179 (571)
T ss_dssp             SCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--------------------
T ss_pred             CcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--------------------
Confidence            88775 554   56778888888887775 454   46677777777777764 443 21                    


Q ss_pred             cccchhhhcccCCCCCCCccccchhhhhhhhhhhhccccceeEEEEeccccccccCCcccccceEECCCCcccCCCCccc
Q 004704          475 PELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDI  554 (735)
Q Consensus       475 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l  554 (735)
                                                                                 ++|+.|+|++|+++ .+|. +
T Consensus       180 -----------------------------------------------------------~~L~~L~Ls~N~L~-~lp~-~  198 (571)
T 3cvr_A          180 -----------------------------------------------------------ESLEALDVSTNLLE-SLPA-V  198 (571)
T ss_dssp             -----------------------------------------------------------TTCCEEECCSSCCS-SCCC-C
T ss_pred             -----------------------------------------------------------CCCCEEECcCCCCC-chhh-H
Confidence                                                                       24666777777777 5666 5


Q ss_pred             cccccC-------CeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccCCccccCCC
Q 004704          555 GQLQAI-------LALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALN  606 (735)
Q Consensus       555 ~~l~~L-------~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~  606 (735)
                      ..  +|       +.|+|++|.|+ .+|..+..+++|+.|+|++|++++.+|..+..++
T Consensus       199 ~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~  254 (571)
T 3cvr_A          199 PV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQT  254 (571)
T ss_dssp             C----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred             HH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence            54  56       77777777777 4666666677777777777777777777666544

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.81  E-value=2.3e-19  Score=173.19  Aligned_cols=130  Identities=22%  Similarity=0.237  Sum_probs=59.8

Q ss_pred             CcEEEcCCCcCCCCCCccCCCCCCCCEEEcccCCCCccCCCcc-CCCCccEEEccCCcccccCcccccCCCCCcEEeCCC
Q 004704          316 LEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSL-NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRD  394 (735)
Q Consensus       316 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~  394 (735)
                      +++|++++|++++..+..|..+++|++|++++|++++..+..+ .+++|++|++++|.+++..+..+..+++|++|++++
T Consensus        30 l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~  109 (208)
T 2o6s_A           30 TTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNT  109 (208)
T ss_dssp             CSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCC
Confidence            5555555555554444444555555555555555544333332 344444444444444433333344444444444444


Q ss_pred             CcccccCChhhhCCCCccEEEccCCcCCCCCchhhhcCCCCCEEECcCCcC
Q 004704          395 NTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKF  445 (735)
Q Consensus       395 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l  445 (735)
                      |++++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|++
T Consensus       110 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~  160 (208)
T 2o6s_A          110 NQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW  160 (208)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred             CcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCe
Confidence            444433333344444444444444444433333344444444444444443

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.80  E-value=2.5e-19  Score=174.17  Aligned_cols=157  Identities=21%  Similarity=0.249  Sum_probs=129.9

Q ss_pred             cEEeCCCCcccccCChhhhCCCCccEEEccCCcCCCCCc-hhhhcCCCCCEEECcCCcCCCCCCchhhcccccccccCCc
Q 004704          388 VTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIP-DQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDV  466 (735)
Q Consensus       388 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~  466 (735)
                      +.+++++|.++ .+|..+.  +.+++|++++|.+++..+ ..|..+++|+.|++++|++++..+..|..           
T Consensus        14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~-----------   79 (220)
T 2v70_A           14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEG-----------   79 (220)
T ss_dssp             TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTT-----------
T ss_pred             CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCC-----------
Confidence            57888888887 4565553  456888888888886644 45788888999999998888665555543           


Q ss_pred             cCCCCCCCcccchhhhcccCCCCCCCccccchhhhhhhhhhhhccccceeEEEEeccccccccCCcccccceEECCCCcc
Q 004704          467 LNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQL  546 (735)
Q Consensus       467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l  546 (735)
                                                                                        +++|+.|+|++|++
T Consensus        80 ------------------------------------------------------------------l~~L~~L~Ls~N~l   93 (220)
T 2v70_A           80 ------------------------------------------------------------------ASGVNEILLTSNRL   93 (220)
T ss_dssp             ------------------------------------------------------------------CTTCCEEECCSSCC
T ss_pred             ------------------------------------------------------------------CCCCCEEECCCCcc
Confidence                                                                              25678899999999


Q ss_pred             cCCCCccccccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccCCccccCCCCCCeEEcccCcCcccCCC
Q 004704          547 TGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPD  624 (735)
Q Consensus       547 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~  624 (735)
                      ++..|..|+.+++|++|+|++|++++..|..|.++++|++|+|++|++++..|..+..+++|++|++++|++++.++-
T Consensus        94 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l  171 (220)
T 2v70_A           94 ENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYL  171 (220)
T ss_dssp             CCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGG
T ss_pred             CccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCch
Confidence            877777899999999999999999988899999999999999999999998899999999999999999999887663

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.80  E-value=4.7e-19  Score=171.07  Aligned_cols=162  Identities=22%  Similarity=0.219  Sum_probs=86.8

Q ss_pred             CccEEEccCCcccccCcccccCCCCCcEEeCCCCcccccCChhhhCCCCccEEEccCCcCCCCCchhhhcCCCCCEEECc
Q 004704          362 SVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLS  441 (735)
Q Consensus       362 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls  441 (735)
                      +|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|+.|+++
T Consensus        29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  108 (208)
T 2o6s_A           29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN  108 (208)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcC
Confidence            34444444444443333344455555555555555554444444555555555555555554444445555566666666


Q ss_pred             CCcCCCCCCchhhcccccccccCCccCCCCCCCcccchhhhcccCCCCCCCccccchhhhhhhhhhhhccccceeEEEEe
Q 004704          442 RNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAM  521 (735)
Q Consensus       442 ~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  521 (735)
                      +|++++..+..+..                                                                  
T Consensus       109 ~N~l~~~~~~~~~~------------------------------------------------------------------  122 (208)
T 2o6s_A          109 TNQLQSLPDGVFDK------------------------------------------------------------------  122 (208)
T ss_dssp             SSCCCCCCTTTTTT------------------------------------------------------------------
T ss_pred             CCcCcccCHhHhcc------------------------------------------------------------------
Confidence            66555333322222                                                                  


Q ss_pred             ccccccccCCcccccceEECCCCcccCCCCccccccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccCCcc
Q 004704          522 KNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQ  601 (735)
Q Consensus       522 ~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~  601 (735)
                                 +++|+.|++++|++++..+..+..+++|+.|++++|.+.+       .+++|+.|+++.|+++|.+|..
T Consensus       123 -----------l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~  184 (208)
T 2o6s_A          123 -----------LTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNS  184 (208)
T ss_dssp             -----------CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCT
T ss_pred             -----------CCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeecc
Confidence                       2345556666666664444445666666666666665553       2345666666666666666666


Q ss_pred             ccCCCC
Q 004704          602 LTALNF  607 (735)
Q Consensus       602 l~~l~~  607 (735)
                      ++.++.
T Consensus       185 ~~~l~~  190 (208)
T 2o6s_A          185 AGSVAP  190 (208)
T ss_dssp             TSSBCT
T ss_pred             CccccC
Confidence            665543

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.79  E-value=4.4e-19  Score=172.47  Aligned_cols=156  Identities=21%  Similarity=0.264  Sum_probs=122.1

Q ss_pred             cEEeCCCCcccccCChhhhCCCCccEEEccCCcCCCCCchhhhcCCCCCEEECcCCcCCCCCCchhhcccccccccCCcc
Q 004704          388 VTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVL  467 (735)
Q Consensus       388 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~  467 (735)
                      +.++++++.++ .+|..+.  ++++.|++++|.+++..+..|..+++|+.|++++|++++..|..|..+           
T Consensus        14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l-----------   79 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGL-----------   79 (220)
T ss_dssp             TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTC-----------
T ss_pred             CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCC-----------
Confidence            46777777776 5565444  578888888888886666678888888888888888876666655442           


Q ss_pred             CCCCCCCcccchhhhcccCCCCCCCccccchhhhhhhhhhhhccccceeEEEEeccccccccCCcccccceEECCCCccc
Q 004704          468 NGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLT  547 (735)
Q Consensus       468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~  547 (735)
                                                                                        ++|+.|+|++|+++
T Consensus        80 ------------------------------------------------------------------~~L~~L~Ls~N~l~   93 (220)
T 2v9t_B           80 ------------------------------------------------------------------RSLNSLVLYGNKIT   93 (220)
T ss_dssp             ------------------------------------------------------------------SSCCEEECCSSCCC
T ss_pred             ------------------------------------------------------------------cCCCEEECCCCcCC
Confidence                                                                              56777888888888


Q ss_pred             CCCCccccccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccCCccccCCCCCCeEEcccCcCcccCC
Q 004704          548 GEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTP  623 (735)
Q Consensus       548 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p  623 (735)
                      +..+..|..+++|+.|+|++|++++..|..|.++++|+.|+|++|++++..+..+..+++|++|++++|++.+.++
T Consensus        94 ~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~  169 (220)
T 2v9t_B           94 ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCH  169 (220)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred             ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCc
Confidence            5555567888899999999999998888889999999999999999998888888889999999998888876443

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.79  E-value=8.5e-19  Score=193.16  Aligned_cols=167  Identities=23%  Similarity=0.314  Sum_probs=78.2

Q ss_pred             CCCCEEEccccccCccccccccCCCCCCEEEeeCCccCCCCCchhhhhcccCcEEEcCCCcCCCCCCccCCCCCCCCEEE
Q 004704          265 TRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILD  344 (735)
Q Consensus       265 ~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  344 (735)
                      ++|++|++++|+++ .+|   ..+++|++|++++|.+++ +|. +..   +|+.|++++|++++ +|.   .+++|+.|+
T Consensus        80 ~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~---~L~~L~Ls~N~l~~-lp~---~l~~L~~L~  146 (571)
T 3cvr_A           80 PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA---SLKHLDVDNNQLTM-LPE---LPALLEYIN  146 (571)
T ss_dssp             TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT---TCCEEECCSSCCSC-CCC---CCTTCCEEE
T ss_pred             CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc---CCCEEECCCCcCCC-CCC---cCccccEEe
Confidence            34444444444444 233   223444444444444442 343 222   25555555555443 232   344455555


Q ss_pred             cccCCCCccCCCccCCCCccEEEccCCcccccCcccccCCCCCcEEeCCCCcccccCChhhhCCCCc-------cEEEcc
Q 004704          345 ISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNL-------RFLLLG  417 (735)
Q Consensus       345 L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L-------~~L~L~  417 (735)
                      +++|.+++.+.   .+++|+.|++++|.+++ +|. +.  ++|+.|++++|+|+ .+|. +..  +|       +.|+|+
T Consensus       147 Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls  215 (571)
T 3cvr_A          147 ADNNQLTMLPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCR  215 (571)
T ss_dssp             CCSSCCSCCCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECC
T ss_pred             CCCCccCcCCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecC
Confidence            55555544222   34455555555555544 333 32  45555555555555 3343 332  44       555555


Q ss_pred             CCcCCCCCchhhhcCCCCCEEECcCCcCCCCCCchhhcc
Q 004704          418 GNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANV  456 (735)
Q Consensus       418 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l  456 (735)
                      +|.++ .+|..+..+++|+.|++++|++++.+|..+..+
T Consensus       216 ~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l  253 (571)
T 3cvr_A          216 ENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQ  253 (571)
T ss_dssp             SSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred             CCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence            55555 345555555555555555555555555555444

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.78  E-value=1.8e-18  Score=169.30  Aligned_cols=158  Identities=22%  Similarity=0.257  Sum_probs=129.2

Q ss_pred             CCcEEeCCCCcccccCChhhhCCCCccEEEccCCcCCCCCchhhhcCCCCCEEECcCCcCCCCCCchhhcccccccccCC
Q 004704          386 KLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDD  465 (735)
Q Consensus       386 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~  465 (735)
                      +-+.++.++++++ .+|..+.  ++|++|+|++|.+.+..|..|..+++|+.|++++|++++..+..|..          
T Consensus        20 s~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~----------   86 (229)
T 3e6j_A           20 SGTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDS----------   86 (229)
T ss_dssp             ETTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT----------
T ss_pred             eCCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhccc----------
Confidence            3567888888776 5665544  78888888888888877888888888999999998886444443333          


Q ss_pred             ccCCCCCCCcccchhhhcccCCCCCCCccccchhhhhhhhhhhhccccceeEEEEeccccccccCCcccccceEECCCCc
Q 004704          466 VLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQ  545 (735)
Q Consensus       466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~  545 (735)
                                                                                         +++|+.|+|++|+
T Consensus        87 -------------------------------------------------------------------l~~L~~L~Ls~N~   99 (229)
T 3e6j_A           87 -------------------------------------------------------------------LTQLTVLDLGTNQ   99 (229)
T ss_dssp             -------------------------------------------------------------------CTTCCEEECCSSC
T ss_pred             -------------------------------------------------------------------CCCcCEEECCCCc
Confidence                                                                               3567889999999


Q ss_pred             ccCCCCccccccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccCCccccCCCCCCeEEcccCcCcccCCC
Q 004704          546 LTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPD  624 (735)
Q Consensus       546 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~  624 (735)
                      +++..+..|..+++|+.|+|++|+++ .+|..+..+++|+.|+|++|++++..+..+..+++|+.|++++|++++.++.
T Consensus       100 l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~  177 (229)
T 3e6j_A          100 LTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECRD  177 (229)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBGG
T ss_pred             CCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcch
Confidence            98766777889999999999999999 7888899999999999999999987778899999999999999999877653

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.78  E-value=2.5e-19  Score=188.56  Aligned_cols=178  Identities=25%  Similarity=0.216  Sum_probs=109.4

Q ss_pred             cEEEccCCcccccCcccccCCCCCcEEeCCCCcccccCChhhh-CCCCccEEEccCCcCCCCCchhhhcCCCCCEEECcC
Q 004704          364 EHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQIN-EHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSR  442 (735)
Q Consensus       364 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~  442 (735)
                      +.++++++.++. +|..+.  ..++.|+|++|++++..+..+. .+++|++|+|++|++++..+..|..+++|+.|+|++
T Consensus        21 ~~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   97 (361)
T 2xot_A           21 NILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS   97 (361)
T ss_dssp             TEEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence            466777776664 344332  3466777777777765555565 667777777777777765566677777777777777


Q ss_pred             CcCCCCCCchhhcccccccccCCccCCCCCCCcccchhhhcccCCCCCCCccccchhhhhhhhhhhhccccceeEEEEec
Q 004704          443 NKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMK  522 (735)
Q Consensus       443 N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  522 (735)
                      |++++..+..|..                                                                   
T Consensus        98 N~l~~~~~~~~~~-------------------------------------------------------------------  110 (361)
T 2xot_A           98 NHLHTLDEFLFSD-------------------------------------------------------------------  110 (361)
T ss_dssp             SCCCEECTTTTTT-------------------------------------------------------------------
T ss_pred             CcCCcCCHHHhCC-------------------------------------------------------------------
Confidence            7766443333322                                                                   


Q ss_pred             cccccccCCcccccceEECCCCcccCCCCccccccccCCeEeCCCCcCcccCcccc---cCcCCCCEEeCCCCcccccCC
Q 004704          523 NRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESF---SNLKMIESLDISYNKLTGQIP  599 (735)
Q Consensus       523 ~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~---~~l~~L~~LdLs~N~l~~~~p  599 (735)
                                +++|+.|+|++|++++..|..|..+++|+.|+|++|+|++..+..|   ..+++|+.|||++|++++..+
T Consensus       111 ----------l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~  180 (361)
T 2xot_A          111 ----------LQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPL  180 (361)
T ss_dssp             ----------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCH
T ss_pred             ----------CcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCH
Confidence                      2456666777777666666666666777777777777665444444   456666677777776665444


Q ss_pred             ccccCCCC--CCeEEcccCcCccc
Q 004704          600 PQLTALNF--LSIFNVSYNNLSGR  621 (735)
Q Consensus       600 ~~l~~l~~--L~~L~ls~N~l~~~  621 (735)
                      ..+..++.  ++.|++++|++.+.
T Consensus       181 ~~~~~l~~~~l~~l~l~~N~~~C~  204 (361)
T 2xot_A          181 TDLQKLPAWVKNGLYLHNNPLECD  204 (361)
T ss_dssp             HHHHHSCHHHHTTEECCSSCEECC
T ss_pred             HHhhhccHhhcceEEecCCCccCC
Confidence            55665554  35666666666543

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.77  E-value=1.4e-18  Score=168.82  Aligned_cols=157  Identities=20%  Similarity=0.282  Sum_probs=137.1

Q ss_pred             cEEEccCCcCCCCCchhhhcCCCCCEEECcCCcCCCCCCchhhcccccccccCCccCCCCCCCcccchhhhcccCCCCCC
Q 004704          412 RFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRS  491 (735)
Q Consensus       412 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  491 (735)
                      +.++++++.++ .+|..+.  ++++.|++++|++++..+..|..                                    
T Consensus        14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~------------------------------------   54 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSP------------------------------------   54 (220)
T ss_dssp             TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTT------------------------------------
T ss_pred             CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhC------------------------------------
Confidence            67899999998 5666554  68999999999998655544443                                    


Q ss_pred             CccccchhhhhhhhhhhhccccceeEEEEeccccccccCCcccccceEECCCCcccCCCCccccccccCCeEeCCCCcCc
Q 004704          492 SNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLS  571 (735)
Q Consensus       492 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  571 (735)
                                                               +++|+.|+|++|++++..|..|..+++|++|+|++|+|+
T Consensus        55 -----------------------------------------l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~   93 (220)
T 2v9t_B           55 -----------------------------------------YKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT   93 (220)
T ss_dssp             -----------------------------------------CTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCC
T ss_pred             -----------------------------------------CCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCC
Confidence                                                     367889999999999888999999999999999999999


Q ss_pred             ccCcccccCcCCCCEEeCCCCcccccCCccccCCCCCCeEEcccCcCcccCCC-CCCCCccCCcccCCCCCCCCcccc
Q 004704          572 GSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPD-KGQFATFDESSYRGNPSLCAWLIQ  648 (735)
Q Consensus       572 ~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~-~~~~~~~~~~~~~gN~~lc~~~~~  648 (735)
                      +..+..|.++++|++|+|++|++++..|..|..+++|++|++++|++++..+. ...+..+....+.+||+.|+|.+.
T Consensus        94 ~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~l~  171 (220)
T 2v9t_B           94 ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHLK  171 (220)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGGGH
T ss_pred             ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCccH
Confidence            77777799999999999999999999999999999999999999999988875 455667778889999999998764

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.77  E-value=2.9e-18  Score=174.41  Aligned_cols=170  Identities=21%  Similarity=0.358  Sum_probs=107.3

Q ss_pred             CCCccEEEccCCcccccCcccccCCCCCcEEeCCCCcccccCChhhhCCCCccEEEccCCcCCCCCchhhhcCCCCCEEE
Q 004704          360 LSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMD  439 (735)
Q Consensus       360 l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  439 (735)
                      +++|+.|++++|.+... + .+..+++|++|++++|++++..+  +..+++|++|++++|.+++ ++ .+..+++|+.|+
T Consensus        45 l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~  118 (291)
T 1h6t_A           45 LNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLS  118 (291)
T ss_dssp             HHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEE
T ss_pred             cCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEE
Confidence            34444444444444432 2 24555666666666666654332  5666666666666666653 22 366667777777


Q ss_pred             CcCCcCCCCCCchhhcccccccccCCccCCCCCCCcccchhhhcccCCCCCCCccccchhhhhhhhhhhhccccceeEEE
Q 004704          440 LSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEF  519 (735)
Q Consensus       440 Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  519 (735)
                      +++|++++. + .+.                                                                 
T Consensus       119 L~~n~i~~~-~-~l~-----------------------------------------------------------------  131 (291)
T 1h6t_A          119 LEHNGISDI-N-GLV-----------------------------------------------------------------  131 (291)
T ss_dssp             CTTSCCCCC-G-GGG-----------------------------------------------------------------
T ss_pred             CCCCcCCCC-h-hhc-----------------------------------------------------------------
Confidence            777766532 1 111                                                                 


Q ss_pred             EeccccccccCCcccccceEECCCCcccCCCCccccccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccCC
Q 004704          520 AMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIP  599 (735)
Q Consensus       520 ~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p  599 (735)
                                  .+++|+.|++++|++++.  ..++.+++|+.|++++|++++..|  +..+++|+.|++++|++++ +|
T Consensus       132 ------------~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~  194 (291)
T 1h6t_A          132 ------------HLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR  194 (291)
T ss_dssp             ------------GCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG
T ss_pred             ------------CCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-Ch
Confidence                        124566677777777643  457777788888888888876544  7778888888888888874 44


Q ss_pred             ccccCCCCCCeEEcccCcCcc
Q 004704          600 PQLTALNFLSIFNVSYNNLSG  620 (735)
Q Consensus       600 ~~l~~l~~L~~L~ls~N~l~~  620 (735)
                       .+..+++|+.|++++|+++.
T Consensus       195 -~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          195 -ALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             -GGTTCTTCSEEEEEEEEEEC
T ss_pred             -hhccCCCCCEEECcCCcccC
Confidence             37778888888888887765

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.77  E-value=9.6e-19  Score=184.11  Aligned_cols=111  Identities=27%  Similarity=0.199  Sum_probs=63.8

Q ss_pred             CEEEcccCCCCccCCCccCCCCccEEEccCCcccccCccccc-CCCCCcEEeCCCCcccccCChhhhCCCCccEEEccCC
Q 004704          341 RILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELF-RSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGN  419 (735)
Q Consensus       341 ~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n  419 (735)
                      +.++++++.++..+...  .+.++.|++++|.+++..+..+. .+++|+.|++++|+|++..+..|..+++|++|+|++|
T Consensus        21 ~~l~c~~~~l~~iP~~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N   98 (361)
T 2xot_A           21 NILSCSKQQLPNVPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN   98 (361)
T ss_dssp             TEEECCSSCCSSCCSSC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CEEEeCCCCcCccCccC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence            45666666655433222  23356666666666655555555 5666666666666666555555666666666666666


Q ss_pred             cCCCCCchhhhcCCCCCEEECcCCcCCCCCCchh
Q 004704          420 HLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCF  453 (735)
Q Consensus       420 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~  453 (735)
                      ++++..+..|..+++|+.|+|++|++++..|..|
T Consensus        99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~  132 (361)
T 2xot_A           99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAF  132 (361)
T ss_dssp             CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTT
T ss_pred             cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHh
Confidence            6665555556666666666666666654444433

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.76  E-value=6.7e-18  Score=164.06  Aligned_cols=156  Identities=17%  Similarity=0.216  Sum_probs=120.1

Q ss_pred             cEEEccCCcccccCcccccCCCCCcEEeCCCCcccccCC-hhhhCCCCccEEEccCCcCCCCCchhhhcCCCCCEEECcC
Q 004704          364 EHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIP-HQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSR  442 (735)
Q Consensus       364 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~  442 (735)
                      +.+++++|.++. +|..+.  ..++.|++++|++++..+ ..|..+++|++|++++|.+++..+..|..+++|+.|++++
T Consensus        14 ~~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   90 (220)
T 2v70_A           14 TTVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS   90 (220)
T ss_dssp             TEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence            356666666653 344332  345777788887776544 4567788888888888888876677788888888888888


Q ss_pred             CcCCCCCCchhhcccccccccCCccCCCCCCCcccchhhhcccCCCCCCCccccchhhhhhhhhhhhccccceeEEEEec
Q 004704          443 NKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMK  522 (735)
Q Consensus       443 N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  522 (735)
                      |++++..|..|..                                                                   
T Consensus        91 N~l~~~~~~~~~~-------------------------------------------------------------------  103 (220)
T 2v70_A           91 NRLENVQHKMFKG-------------------------------------------------------------------  103 (220)
T ss_dssp             SCCCCCCGGGGTT-------------------------------------------------------------------
T ss_pred             CccCccCHhHhcC-------------------------------------------------------------------
Confidence            8887666555543                                                                   


Q ss_pred             cccccccCCcccccceEECCCCcccCCCCccccccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccCC
Q 004704          523 NRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIP  599 (735)
Q Consensus       523 ~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p  599 (735)
                                +++|+.|+|++|++++..|..|..+++|+.|+|++|++++..|..|..+++|+.|+|++|.+.+..+
T Consensus       104 ----------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  170 (220)
T 2v70_A          104 ----------LESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY  170 (220)
T ss_dssp             ----------CSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred             ----------CcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence                      2567788888888888888889999999999999999998889999999999999999999986544

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.75  E-value=5.6e-18  Score=172.29  Aligned_cols=187  Identities=21%  Similarity=0.317  Sum_probs=134.7

Q ss_pred             EEcCCCcCCCCCCccCCCCCCCCEEEcccCCCCccCCCccCCCCccEEEccCCcccccCcccccCCCCCcEEeCCCCccc
Q 004704          319 LSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFS  398 (735)
Q Consensus       319 L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~  398 (735)
                      +.+..+.+++..+  +..+++|+.|++++|.+... +....+++|+.|++++|.+++..+  +..+++|++|++++|+++
T Consensus        29 ~~l~~~~~~~~~~--~~~l~~L~~L~l~~~~i~~~-~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~  103 (291)
T 1h6t_A           29 DNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV-QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVK  103 (291)
T ss_dssp             HHTTCSCTTSEEC--HHHHHTCCEEECTTSCCCCC-TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred             HHhcCCCcccccc--hhhcCcccEEEccCCCcccC-hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCC
Confidence            3444444443222  23455666666666666543 333356777777777777765433  777888888888888887


Q ss_pred             ccCChhhhCCCCccEEEccCCcCCCCCchhhhcCCCCCEEECcCCcCCCCCCchhhcccccccccCCccCCCCCCCcccc
Q 004704          399 GRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELD  478 (735)
Q Consensus       399 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~  478 (735)
                      + ++ .+..+++|++|++++|.+++.  +.+..+++|+.|++++|++++.  ..+.                        
T Consensus       104 ~-~~-~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~------------------------  153 (291)
T 1h6t_A          104 D-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLS------------------------  153 (291)
T ss_dssp             C-GG-GGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGG------------------------
T ss_pred             C-Ch-hhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhc------------------------
Confidence            4 33 478888888888888888853  4678888999999999988743  2222                        


Q ss_pred             hhhhcccCCCCCCCccccchhhhhhhhhhhhccccceeEEEEeccccccccCCcccccceEECCCCcccCCCCccccccc
Q 004704          479 EEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQ  558 (735)
Q Consensus       479 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~  558 (735)
                                                                           .+++|+.|++++|++++..|  +..++
T Consensus       154 -----------------------------------------------------~l~~L~~L~L~~N~l~~~~~--l~~l~  178 (291)
T 1h6t_A          154 -----------------------------------------------------RLTKLDTLSLEDNQISDIVP--LAGLT  178 (291)
T ss_dssp             -----------------------------------------------------GCTTCSEEECCSSCCCCCGG--GTTCT
T ss_pred             -----------------------------------------------------cCCCCCEEEccCCccccchh--hcCCC
Confidence                                                                 23678889999999986544  88999


Q ss_pred             cCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCccccc
Q 004704          559 AILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQ  597 (735)
Q Consensus       559 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~  597 (735)
                      +|+.|++++|.+++ +|. +..+++|+.|++++|+++..
T Consensus       179 ~L~~L~L~~N~i~~-l~~-l~~l~~L~~L~l~~n~i~~~  215 (291)
T 1h6t_A          179 KLQNLYLSKNHISD-LRA-LAGLKNLDVLELFSQECLNK  215 (291)
T ss_dssp             TCCEEECCSSCCCB-CGG-GTTCTTCSEEEEEEEEEECC
T ss_pred             ccCEEECCCCcCCC-Chh-hccCCCCCEEECcCCcccCC
Confidence            99999999999995 454 89999999999999999853

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.74  E-value=1.7e-18  Score=179.88  Aligned_cols=292  Identities=13%  Similarity=0.101  Sum_probs=182.4

Q ss_pred             CccccccCC--CCCCCEEeCCCCcCCCCcchhhhC-CCCCCEEeCCCCccc--ccCChhhhhcCCCCCeeeccccccccc
Q 004704           10 SPLITCLKN--LTRLKILDISSNQLNGSLPSVISN-LTSLEYLDLSHNNFE--GMFPLSSLANHSKLEGLLLSTRNNTLH   84 (735)
Q Consensus        10 ~~~~~~~~~--l~~L~~L~Ls~n~i~~~~p~~~~~-l~~L~~L~Ls~n~l~--~~~~~~~~~~l~~L~~L~L~~~~~~~~   84 (735)
                      |.++..+..  ++++++|+++++ +.......+.. +++|++|||++|++.  ...+ ..+   +.++.+.+..+    .
T Consensus        13 g~l~~~l~~~~~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~-~~~---~~~~~~~~~~~----~   83 (329)
T 3sb4_A           13 GTLISMMTEEEANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKA-GTY---PNGKFYIYMAN----F   83 (329)
T ss_dssp             TCGGGGSCHHHHHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESS-SSS---GGGCCEEECTT----E
T ss_pred             CcHHhhccchhhCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCcc-ccc---ccccccccccc----c
Confidence            445555554  778899999875 22222234444 788999999999886  1111 111   12333444333    4


Q ss_pred             ccCCCCCC--------CCCeeEEEeeCCCCCCCCchhhhCCCCCCEEEccCCcCcccCchHHHhCCCCCcEEECcCCc--
Q 004704           85 VKTENWLP--------TSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNS--  154 (735)
Q Consensus        85 ~~~~~~~~--------~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~--  154 (735)
                      ++..+|..        |++|+.++|.+ +++.+...+|.+|++|+.|++++|.+. .++...|..+.++..+.+..+.  
T Consensus        84 I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~-~i~~~aF~~~~~l~~l~~~~~~~~  161 (329)
T 3sb4_A           84 VPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAP-NLLPEALADSVTAIFIPLGSSDAY  161 (329)
T ss_dssp             ECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCC-EECTTSSCTTTCEEEECTTCTHHH
T ss_pred             cCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCcc-ccchhhhcCCCceEEecCcchhhh
Confidence            66667777        88888888888 777777778888888888888888887 6776777677777766665532  


Q ss_pred             --CcccCcCCcCCCCCcC-EEEccCCcCCCcCChhHHHh---cccCcEEECcCCcCCCCCCccc-CCCCCCCEEECCCcc
Q 004704          155 --FSGILQLPKAKHDFLH-HLDISCNNFRGKLPHNMGVI---LQKLMYMDISKNCFEGNIPYSA-GEMKELSLLDLSRNY  227 (735)
Q Consensus       155 --l~~~~~~~~~~~~~L~-~L~Ls~n~l~~~~~~~~~~~---l~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~L~~n~  227 (735)
                        ...+...+|..+..|+ .+.+....   .++..++..   ..+++.+.+.++-.. .....+ ..+++|+.+++++|.
T Consensus       162 ~~~~~i~~~~f~~~~~L~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~  237 (329)
T 3sb4_A          162 RFKNRWEHFAFIEGEPLETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTN  237 (329)
T ss_dssp             HTSTTTTTSCEEESCCCEEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBC
T ss_pred             hccccccccccccccccceeEEecCCC---cHHHHHhhcccCccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCC
Confidence              2333345566666666 45554322   344444432   345555555543211 111111 126777777777777


Q ss_pred             ccCccchhhhhCCCCCCEEEccCCCCCCcCcccccCCCCCC-EEEccccccCccccccccCCCCCCEEEeeCCccCCCCC
Q 004704          228 FSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLR-HLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIP  306 (735)
Q Consensus       228 l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~-~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p  306 (735)
                      ++ .++...|.+|.+|+++++.+| +..+...+|.++++|+ .+++.+ .++...+.+|..+++|+.++++.|.++..-+
T Consensus       238 i~-~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~  314 (329)
T 3sb4_A          238 AT-TIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGD  314 (329)
T ss_dssp             CC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECT
T ss_pred             cc-eecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccch
Confidence            76 677777777777777777776 6666667777777777 777777 5665566777777777777777777763334


Q ss_pred             chhhhhcccCcEEE
Q 004704          307 HWMGNFSSELEILS  320 (735)
Q Consensus       307 ~~~~~~~~~L~~L~  320 (735)
                      ..|..+++ |+.++
T Consensus       315 ~aF~~~~~-L~~ly  327 (329)
T 3sb4_A          315 ELFGNGVP-SKLIY  327 (329)
T ss_dssp             TTTCTTCC-CCEEE
T ss_pred             hhhcCCcc-hhhhc
Confidence            45555555 77665

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.74  E-value=3e-17  Score=160.57  Aligned_cols=156  Identities=22%  Similarity=0.295  Sum_probs=126.7

Q ss_pred             ccEEEccCCcccccCcccccCCCCCcEEeCCCCcccccCChhhhCCCCccEEEccCCcCCCCCchhhhcCCCCCEEECcC
Q 004704          363 VEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSR  442 (735)
Q Consensus       363 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~  442 (735)
                      -+.++.+++.+. .+|..+.  ++|++|++++|.+++..|..+..+++|++|+|++|.+.+..+..|..+++|+.|++++
T Consensus        21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~   97 (229)
T 3e6j_A           21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT   97 (229)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence            455666666665 3344332  6788888988888887788888889999999999998866667788899999999999


Q ss_pred             CcCCCCCCchhhcccccccccCCccCCCCCCCcccchhhhcccCCCCCCCccccchhhhhhhhhhhhccccceeEEEEec
Q 004704          443 NKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMK  522 (735)
Q Consensus       443 N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  522 (735)
                      |++++..+..|..                                                                   
T Consensus        98 N~l~~l~~~~~~~-------------------------------------------------------------------  110 (229)
T 3e6j_A           98 NQLTVLPSAVFDR-------------------------------------------------------------------  110 (229)
T ss_dssp             SCCCCCCTTTTTT-------------------------------------------------------------------
T ss_pred             CcCCccChhHhCc-------------------------------------------------------------------
Confidence            9988655544433                                                                   


Q ss_pred             cccccccCCcccccceEECCCCcccCCCCccccccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccCC
Q 004704          523 NRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIP  599 (735)
Q Consensus       523 ~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p  599 (735)
                                +++|+.|+|++|+++ .+|..+..+++|+.|+|++|++++..+..|..+++|+.|+|++|.+.+..+
T Consensus       111 ----------l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  176 (229)
T 3e6j_A          111 ----------LVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR  176 (229)
T ss_dssp             ----------CTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred             ----------chhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence                      357888999999998 789999999999999999999998777889999999999999999986543

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.74  E-value=6.3e-18  Score=188.45  Aligned_cols=104  Identities=23%  Similarity=0.309  Sum_probs=54.3

Q ss_pred             CCCCCCEEEcccCCCCccCCCccCCCCccEEEccCCcccccCcccccCCCCCcEEeCCCCcccccCChhhhCCCCccEEE
Q 004704          336 NLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLL  415 (735)
Q Consensus       336 ~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  415 (735)
                      .++.|+.|++++|.+... +....+++|+.|+|++|.+.+..+  +..+++|+.|+|++|.+++ +| .+..+++|+.|+
T Consensus        41 ~L~~L~~L~l~~n~i~~l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~  115 (605)
T 1m9s_A           41 ELNSIDQIIANNSDIKSV-QGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLS  115 (605)
T ss_dssp             HHTTCCCCBCTTCCCCCC-TTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEE
T ss_pred             cCCCCCEEECcCCCCCCC-hHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEE
Confidence            344455555555544432 222245555555555555554332  5555556666666665553 22 455566666666


Q ss_pred             ccCCcCCCCCchhhhcCCCCCEEECcCCcCC
Q 004704          416 LGGNHLQGPIPDQLCQLQKLAMMDLSRNKFS  446 (735)
Q Consensus       416 L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~  446 (735)
                      |++|.+.+ + +.+..+++|+.|+|++|+++
T Consensus       116 Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~  144 (605)
T 1m9s_A          116 LEHNGISD-I-NGLVHLPQLESLYLGNNKIT  144 (605)
T ss_dssp             CTTSCCCC-C-GGGGGCTTCSEEECCSSCCC
T ss_pred             ecCCCCCC-C-ccccCCCccCEEECCCCccC
Confidence            66666653 2 23556666666666666655

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.73  E-value=4.9e-18  Score=161.30  Aligned_cols=113  Identities=22%  Similarity=0.285  Sum_probs=86.2

Q ss_pred             cccceEECCCCcccCCCCccccccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccCCccccCCCCCCeEEc
Q 004704          534 NRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNV  613 (735)
Q Consensus       534 ~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~l  613 (735)
                      ++|+.|+|++|++++..|..|+.+++|++|+|++|++++..|..|+++++|++|||++|++++.+|..+..+++|++|++
T Consensus        54 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  133 (192)
T 1w8a_A           54 PHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNL  133 (192)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEEC
T ss_pred             CCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEe
Confidence            56677788888887777888888888888888888888888888888899999999999998888888888899999999


Q ss_pred             ccCcCcccCCCCCCCCccCCcccCCCCCCCCcc
Q 004704          614 SYNNLSGRTPDKGQFATFDESSYRGNPSLCAWL  646 (735)
Q Consensus       614 s~N~l~~~~p~~~~~~~~~~~~~~gN~~lc~~~  646 (735)
                      ++|+++|.++.......+....+.++...|+.|
T Consensus       134 ~~N~l~c~c~l~~~~~~l~~~~~~~~~~~C~~P  166 (192)
T 1w8a_A          134 ASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAP  166 (192)
T ss_dssp             TTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSS
T ss_pred             CCCCccCcCcchHHHHHHHHcCCCCCCCCCCCC
Confidence            999988877632211112223445566667654

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.73  E-value=8.5e-18  Score=160.52  Aligned_cols=154  Identities=17%  Similarity=0.265  Sum_probs=110.2

Q ss_pred             cCCCCCcEEeCCCCcccccCChhhhCCCCccEEEccCCcCCCCCchhhhcCCCCCEEECcCCcCCCCCCchhhccccccc
Q 004704          382 FRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRV  461 (735)
Q Consensus       382 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~  461 (735)
                      ..+++|+.|++++|.++ .+| .+..+++|++|++++|.+.  .+..+..+++|++|++++|++++..|..++.      
T Consensus        41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~------  110 (197)
T 4ezg_A           41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSG------  110 (197)
T ss_dssp             HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTT------
T ss_pred             hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcC------
Confidence            44566777777777776 445 5677777777777777655  2346777778888888888777544444332      


Q ss_pred             ccCCccCCCCCCCcccchhhhcccCCCCCCCccccchhhhhhhhhhhhccccceeEEEEeccccccccCCcccccceEEC
Q 004704          462 GSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDL  541 (735)
Q Consensus       462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdL  541 (735)
                                                                                             +++|+.|++
T Consensus       111 -----------------------------------------------------------------------l~~L~~L~L  119 (197)
T 4ezg_A          111 -----------------------------------------------------------------------LTSLTLLDI  119 (197)
T ss_dssp             -----------------------------------------------------------------------CTTCCEEEC
T ss_pred             -----------------------------------------------------------------------CCCCCEEEe
Confidence                                                                                   356777888


Q ss_pred             CCCcccCCCCccccccccCCeEeCCCCc-CcccCcccccCcCCCCEEeCCCCcccccCCccccCCCCCCeEEcccCcCcc
Q 004704          542 SCNQLTGEIPSDIGQLQAILALNLSNNS-LSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSG  620 (735)
Q Consensus       542 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~  620 (735)
                      ++|++++..|..++.+++|++|++++|. ++ .+| .++.+++|+.|++++|++++ ++ .+..+++|++|++++|++.+
T Consensus       120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          120 SHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             CSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred             cCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence            8888877677778888888888888887 55 455 58888888888888888885 44 67888888888888888754

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.72  E-value=2.8e-17  Score=183.18  Aligned_cols=174  Identities=24%  Similarity=0.376  Sum_probs=120.1

Q ss_pred             cCCCCCCEEEccccccCccccccccCCCCCCEEEeeCCccCCCCCchhhhhcccCcEEEcCCCcCCCCCCccCCCCCCCC
Q 004704          262 MNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLR  341 (735)
Q Consensus       262 ~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~  341 (735)
                      ..+++|+.|++++|.+.. ++ .+..+++|+.|+|++|.+++. +. +..++. |+.|+|++|.+.+ ++ .+..+++|+
T Consensus        40 ~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~-~~-l~~l~~-L~~L~Ls~N~l~~-l~-~l~~l~~L~  112 (605)
T 1m9s_A           40 NELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDI-KP-LTNLKN-LGWLFLDENKIKD-LS-SLKDLKKLK  112 (605)
T ss_dssp             HHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCC-GG-GGGCTT-CCEEECCSSCCCC-CT-TSTTCTTCC
T ss_pred             hcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCC-hh-hccCCC-CCEEECcCCCCCC-Ch-hhccCCCCC
Confidence            345555555666555542 22 355566666666666666533 22 555554 6666666666664 22 566777777


Q ss_pred             EEEcccCCCCccCCCccCCCCccEEEccCCcccccCcccccCCCCCcEEeCCCCcccccCChhhhCCCCccEEEccCCcC
Q 004704          342 ILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHL  421 (735)
Q Consensus       342 ~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l  421 (735)
                      .|+|++|.+.+. +....+++|+.|+|++|.+++.  ..+..+++|+.|+|++|++++..|  +..+++|+.|+|++|.+
T Consensus       113 ~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i  187 (605)
T 1m9s_A          113 SLSLEHNGISDI-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI  187 (605)
T ss_dssp             EEECTTSCCCCC-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred             EEEecCCCCCCC-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCC
Confidence            777777777653 3344677888888888887765  567788888899999888886555  78888999999999988


Q ss_pred             CCCCchhhhcCCCCCEEECcCCcCCCCC
Q 004704          422 QGPIPDQLCQLQKLAMMDLSRNKFSGSI  449 (735)
Q Consensus       422 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  449 (735)
                      .+.  +.+..+++|+.|+|++|++++..
T Consensus       188 ~~l--~~l~~l~~L~~L~L~~N~l~~~p  213 (605)
T 1m9s_A          188 SDL--RALAGLKNLDVLELFSQECLNKP  213 (605)
T ss_dssp             CBC--GGGTTCTTCSEEECCSEEEECCC
T ss_pred             CCC--hHHccCCCCCEEEccCCcCcCCc
Confidence            853  35888899999999999887543

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.72  E-value=1.2e-17  Score=167.19  Aligned_cols=172  Identities=20%  Similarity=0.276  Sum_probs=136.4

Q ss_pred             CCCCccEEEccCCcccccCcccccCCCCCcEEeCCCCcccccCChhhhCCCCccEEEccCCcCCCCCchhhhcCCCCCEE
Q 004704          359 NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMM  438 (735)
Q Consensus       359 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  438 (735)
                      .+.++..++++++.+++..  .+..+++|+.|++++|.++ .++ .+..+++|++|++++|++++..+  +..+++|+.|
T Consensus        17 ~l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L   90 (263)
T 1xeu_A           17 GLANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEEL   90 (263)
T ss_dssp             HHHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEE
T ss_pred             HHHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEE
Confidence            3455666777777776543  5677888889999988887 455 67888899999999999886444  8889999999


Q ss_pred             ECcCCcCCCCCCchhhcccccccccCCccCCCCCCCcccchhhhcccCCCCCCCccccchhhhhhhhhhhhccccceeEE
Q 004704          439 DLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIE  518 (735)
Q Consensus       439 ~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  518 (735)
                      ++++|++++ +|..                                                                  
T Consensus        91 ~L~~N~l~~-l~~~------------------------------------------------------------------  103 (263)
T 1xeu_A           91 SVNRNRLKN-LNGI------------------------------------------------------------------  103 (263)
T ss_dssp             ECCSSCCSC-CTTC------------------------------------------------------------------
T ss_pred             ECCCCccCC-cCcc------------------------------------------------------------------
Confidence            999998874 2210                                                                  


Q ss_pred             EEeccccccccCCcccccceEECCCCcccCCCCccccccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccC
Q 004704          519 FAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQI  598 (735)
Q Consensus       519 ~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~  598 (735)
                                  .. ++|+.|++++|++++ +| .++.+++|+.|+|++|++++. | .++.+++|+.|+|++|++++. 
T Consensus       104 ------------~~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~-  165 (263)
T 1xeu_A          104 ------------PS-ACLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT-  165 (263)
T ss_dssp             ------------CC-SSCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC-
T ss_pred             ------------cc-CcccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch-
Confidence                        01 467889999999985 33 588999999999999999964 4 689999999999999999976 


Q ss_pred             CccccCCCCCCeEEcccCcCcccC
Q 004704          599 PPQLTALNFLSIFNVSYNNLSGRT  622 (735)
Q Consensus       599 p~~l~~l~~L~~L~ls~N~l~~~~  622 (735)
                       ..+..+++|+.|++++|++++..
T Consensus       166 -~~l~~l~~L~~L~l~~N~~~~~~  188 (263)
T 1xeu_A          166 -GGLTRLKKVNWIDLTGQKCVNEP  188 (263)
T ss_dssp             -TTSTTCCCCCEEEEEEEEEECCC
T ss_pred             -HHhccCCCCCEEeCCCCcccCCc
Confidence             67889999999999999998763

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.71  E-value=6.8e-20  Score=203.16  Aligned_cols=216  Identities=19%  Similarity=0.182  Sum_probs=131.4

Q ss_pred             cCCCCCCEEEeeCCccCCCCCchhhhhcccCcEEEcCCCcCCCCCCccCCCCCCCCEEEcccCCCCccCCCcc-CCCCcc
Q 004704          286 LSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSL-NLSSVE  364 (735)
Q Consensus       286 ~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~-~l~~L~  364 (735)
                      ...+.|+.|++++|+++ .+|..++.+.. |+.|++++|......|..           +..+...+.++..+ .+++|+
T Consensus       346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~-L~~L~l~~n~~l~~l~~l-----------l~~~~~~~~~~~~l~~l~~L~  412 (567)
T 1dce_A          346 ATDEQLFRCELSVEKST-VLQSELESCKE-LQELEPENKWCLLTIILL-----------MRALDPLLYEKETLQYFSTLK  412 (567)
T ss_dssp             STTTTSSSCCCCHHHHH-HHHHHHHHHHH-HHHHCTTCHHHHHHHHHH-----------HHHHCTGGGHHHHHHHHHHHH
T ss_pred             ccCccceeccCChhhHH-hhHHHHHHHHH-HHHhccccchhhhhHHHH-----------HHhcccccCCHHHHHHHHhcc
Confidence            45667777777777776 67777777766 777777555311001100           00111122222222 344444


Q ss_pred             EEE-ccCCcccccCcccccCCCCCcEEeCCCCcccccCChhhhCCCCccEEEccCCcCCCCCchhhhcCCCCCEEECcCC
Q 004704          365 HLS-LQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRN  443 (735)
Q Consensus       365 ~L~-l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N  443 (735)
                      .|+ ++.|.+.           .|..+.+++|.++.. +.     ..|+.|+|++|.+++ +|. +..+++|+.|++++|
T Consensus       413 ~L~~l~~n~~~-----------~L~~l~l~~n~i~~l-~~-----~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N  473 (567)
T 1dce_A          413 AVDPMRAAYLD-----------DLRSKFLLENSVLKM-EY-----ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHN  473 (567)
T ss_dssp             HHCGGGHHHHH-----------HHHHHHHHHHHHHHH-HH-----TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSS
T ss_pred             cCcchhhcccc-----------hhhhhhhhccccccc-Cc-----cCceEEEecCCCCCC-CcC-ccccccCcEeecCcc
Confidence            444 3333221           233334444444421 11     247778888887775 555 777778888888888


Q ss_pred             cCCCCCCchhhcccccccccCCccCCCCCCCcccchhhhcccCCCCCCCccccchhhhhhhhhhhhccccceeEEEEecc
Q 004704          444 KFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKN  523 (735)
Q Consensus       444 ~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  523 (735)
                      +++ .+|..++.+                                                                   
T Consensus       474 ~l~-~lp~~~~~l-------------------------------------------------------------------  485 (567)
T 1dce_A          474 RLR-ALPPALAAL-------------------------------------------------------------------  485 (567)
T ss_dssp             CCC-CCCGGGGGC-------------------------------------------------------------------
T ss_pred             ccc-ccchhhhcC-------------------------------------------------------------------
Confidence            777 566555442                                                                   


Q ss_pred             ccccccCCcccccceEECCCCcccCCCCccccccccCCeEeCCCCcCcccC-cccccCcCCCCEEeCCCCcccccCCcc-
Q 004704          524 RYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSI-PESFSNLKMIESLDISYNKLTGQIPPQ-  601 (735)
Q Consensus       524 ~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~LdLs~N~l~~~~p~~-  601 (735)
                                ++|+.|+|++|++++ +| .++.+++|+.|+|++|+|++.+ |..|+++++|+.|+|++|++++.+|.. 
T Consensus       486 ----------~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~  553 (567)
T 1dce_A          486 ----------RCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQE  553 (567)
T ss_dssp             ----------TTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTT
T ss_pred             ----------CCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHH
Confidence                      456677777777774 56 6788888888888888888766 788888888888888888888665432 


Q ss_pred             --ccCCCCCCeEEc
Q 004704          602 --LTALNFLSIFNV  613 (735)
Q Consensus       602 --l~~l~~L~~L~l  613 (735)
                        +..+++|+.||+
T Consensus       554 ~l~~~lp~L~~L~l  567 (567)
T 1dce_A          554 RLAEMLPSVSSILT  567 (567)
T ss_dssp             HHHHHCTTCSEEEC
T ss_pred             HHHHHCcccCccCC
Confidence              234777887764

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.69  E-value=6.9e-17  Score=154.17  Aligned_cols=59  Identities=20%  Similarity=0.347  Sum_probs=36.2

Q ss_pred             cccceEECCCCc-ccCCCCccccccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccc
Q 004704          534 NRVTGLDLSCNQ-LTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTG  596 (735)
Q Consensus       534 ~~L~~LdLs~N~-l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~  596 (735)
                      ++|+.|++++|. ++ .+| .+..+++|+.|++++|.+++ ++ .+..+++|+.|++++|++.+
T Consensus       136 ~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          136 PKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             SSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred             CCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence            345556666665 33 444 46677777777777777774 33 57777777777777777653

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.69  E-value=6.8e-19  Score=195.13  Aligned_cols=183  Identities=18%  Similarity=0.216  Sum_probs=140.5

Q ss_pred             CCCCccEEEccCCcccccCcccccCCCCCcEEeCCCCc-------------ccccCChhhhCCCCccEEE-ccCCcCCCC
Q 004704          359 NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNT-------------FSGRIPHQINEHSNLRFLL-LGGNHLQGP  424 (735)
Q Consensus       359 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~-------------l~~~~~~~~~~l~~L~~L~-L~~n~l~~~  424 (735)
                      .+++|+.|++++|.++ .+|..+..+++|+.|++++|.             ..+..|..++.+++|+.|+ ++.|.+.. 
T Consensus       347 ~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~-  424 (567)
T 1dce_A          347 TDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD-  424 (567)
T ss_dssp             TTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH-
T ss_pred             cCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccch-
Confidence            4556666666666665 456666666777777765554             4456667777777777777 55554331 


Q ss_pred             Cch------hhhc--CCCCCEEECcCCcCCCCCCchhhcccccccccCCccCCCCCCCcccchhhhcccCCCCCCCcccc
Q 004704          425 IPD------QLCQ--LQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMF  496 (735)
Q Consensus       425 ~~~------~~~~--l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  496 (735)
                      ++.      .+..  ...|+.|++++|++++ +|. ++.                                         
T Consensus       425 L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~-----------------------------------------  461 (567)
T 1dce_A          425 LRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQ-----------------------------------------  461 (567)
T ss_dssp             HHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGG-----------------------------------------
T ss_pred             hhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccc-----------------------------------------
Confidence            111      1111  1358899999999985 454 443                                         


Q ss_pred             chhhhhhhhhhhhccccceeEEEEeccccccccCCcccccceEECCCCcccCCCCccccccccCCeEeCCCCcCcccCcc
Q 004704          497 GMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPE  576 (735)
Q Consensus       497 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~  576 (735)
                                                          +++|+.|+|++|+++ .+|..++.+++|+.|+|++|+|++ +| 
T Consensus       462 ------------------------------------l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-  502 (567)
T 1dce_A          462 ------------------------------------LLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-  502 (567)
T ss_dssp             ------------------------------------GTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-
T ss_pred             ------------------------------------cccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-
Confidence                                                367888999999999 889999999999999999999996 67 


Q ss_pred             cccCcCCCCEEeCCCCcccccC-CccccCCCCCCeEEcccCcCcccCCCC
Q 004704          577 SFSNLKMIESLDISYNKLTGQI-PPQLTALNFLSIFNVSYNNLSGRTPDK  625 (735)
Q Consensus       577 ~~~~l~~L~~LdLs~N~l~~~~-p~~l~~l~~L~~L~ls~N~l~~~~p~~  625 (735)
                      .|+++++|+.|+|++|++++.+ |..+..+++|+.|++++|++++.+|..
T Consensus       503 ~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~  552 (567)
T 1dce_A          503 GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQ  552 (567)
T ss_dssp             GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCT
T ss_pred             ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHH
Confidence            8999999999999999999887 999999999999999999999988754

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.69  E-value=3.1e-17  Score=170.31  Aligned_cols=284  Identities=14%  Similarity=0.095  Sum_probs=129.9

Q ss_pred             CCCCCEEEccCCcCcccCchHHHhCCCCCcEEECcCCcCc--ccCcCCcCCCCCcCEEEccCCcCCCcCChhHHHh----
Q 004704          117 QYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFS--GILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVI----  190 (735)
Q Consensus       117 l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~----  190 (735)
                      +.+++.|+++++ +...--..+...+++|+.|+|++|++.  ......   ++.++.+.+..|    .+|...|..    
T Consensus        24 ~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~---~~~~~~~~~~~~----~I~~~aF~~~~~~   95 (329)
T 3sb4_A           24 ANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGT---YPNGKFYIYMAN----FVPAYAFSNVVNG   95 (329)
T ss_dssp             HHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSS---SGGGCCEEECTT----EECTTTTEEEETT
T ss_pred             hCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCcccc---cccccccccccc----ccCHHHhcccccc
Confidence            445777777754 211111122222677777777777776  222111   122333444443    345555554    


Q ss_pred             ----cccCcEEECcCCcCCCCCCcccCCCCCCCEEECCCccccCccchhhhhCCCCCCEEEccCCC----CCCcCccccc
Q 004704          191 ----LQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNN----FEGQFFSEYM  262 (735)
Q Consensus       191 ----l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~----l~~~~~~~~~  262 (735)
                          +++|+.+++.+ .++...+.+|..+++|+.+++++|.+. .++...|.++.++..+....+.    .......+|.
T Consensus        96 ~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~-~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~  173 (329)
T 3sb4_A           96 VTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAP-NLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFI  173 (329)
T ss_dssp             EEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCC-EECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEE
T ss_pred             cccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCcc-ccchhhhcCCCceEEecCcchhhhhccccccccccc
Confidence                55666666655 454333444555555666666555554 4444555555444444443311    1112223344


Q ss_pred             CCCCCC-EEEccccccCccccccc----cCCCCCCEEEeeCCccCCCCCchhhhhcccCcEEEcCCCcCCCCCCccCCCC
Q 004704          263 NLTRLR-HLYFENNNFSGKIKDGL----LSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNL  337 (735)
Q Consensus       263 ~l~~L~-~L~L~~n~l~~~~~~~l----~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l  337 (735)
                      ++..|+ .+.+....   .++..+    ....+++.+.+.++-.. .....+.....+|+.+++++|+++...+.+|.++
T Consensus       174 ~~~~L~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~  249 (329)
T 3sb4_A          174 EGEPLETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQK  249 (329)
T ss_dssp             ESCCCEEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTC
T ss_pred             cccccceeEEecCCC---cHHHHHhhcccCccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCC
Confidence            444444 23222211   111110    12234444444433111 1111111111225555555555554444445555


Q ss_pred             CCCCEEEcccCCCCccCCCccCCCCccEEEccCCcccccCcccccCCCCCc-EEeCCCCcccccCChhhhCCCCccEEEc
Q 004704          338 ERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLV-TLNLRDNTFSGRIPHQINEHSNLRFLLL  416 (735)
Q Consensus       338 ~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~-~L~l~~n~l~~~~~~~~~~l~~L~~L~L  416 (735)
                      ++|+.+++.+|                        +..+.+.+|.+|.+|+ .+++.+ .++...+.+|.+|++|+.+++
T Consensus       250 ~~L~~l~l~~n------------------------i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l  304 (329)
T 3sb4_A          250 KYLLKIKLPHN------------------------LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLA  304 (329)
T ss_dssp             TTCCEEECCTT------------------------CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEE
T ss_pred             CCCCEEECCcc------------------------cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEe
Confidence            55555555444                        3334444555555555 555555 444444455556666666666


Q ss_pred             cCCcCCCCCchhhhcCCCCCEEE
Q 004704          417 GGNHLQGPIPDQLCQLQKLAMMD  439 (735)
Q Consensus       417 ~~n~l~~~~~~~~~~l~~L~~L~  439 (735)
                      ++|.++...+.+|.++++|+.++
T Consensus       305 ~~n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          305 TGDKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             CSSCCCEECTTTTCTTCCCCEEE
T ss_pred             CCCccCccchhhhcCCcchhhhc
Confidence            55655544455566666665554

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.69  E-value=5.9e-17  Score=153.77  Aligned_cols=132  Identities=26%  Similarity=0.380  Sum_probs=110.0

Q ss_pred             cEEeCCCCcccccCChhhhCCCCccEEEccCCcCCCCCch-hhhcCCCCCEEECcCCcCCCCCCchhhcccccccccCCc
Q 004704          388 VTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPD-QLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDV  466 (735)
Q Consensus       388 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~  466 (735)
                      +.+++++|+++ .+|..+..  ++++|++++|.+++..+. .+..+++|++|++++|++++..|..|..+          
T Consensus        11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l----------   77 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGA----------   77 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTC----------
T ss_pred             CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCc----------
Confidence            67888888886 66665543  888889999988866554 48888999999999999987777666543          


Q ss_pred             cCCCCCCCcccchhhhcccCCCCCCCccccchhhhhhhhhhhhccccceeEEEEeccccccccCCcccccceEECCCCcc
Q 004704          467 LNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQL  546 (735)
Q Consensus       467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l  546 (735)
                                                                                         ++|+.|+|++|++
T Consensus        78 -------------------------------------------------------------------~~L~~L~Ls~N~l   90 (192)
T 1w8a_A           78 -------------------------------------------------------------------SHIQELQLGENKI   90 (192)
T ss_dssp             -------------------------------------------------------------------TTCCEEECCSCCC
T ss_pred             -------------------------------------------------------------------ccCCEEECCCCcC
Confidence                                                                               5678899999999


Q ss_pred             cCCCCccccccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccCC
Q 004704          547 TGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIP  599 (735)
Q Consensus       547 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p  599 (735)
                      ++..|..|+.+++|++|+|++|++++.+|..|+.+++|++|+|++|.+++..+
T Consensus        91 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  143 (192)
T 1w8a_A           91 KEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             CEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred             CccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence            98888889999999999999999999999999999999999999999997655

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.69  E-value=8.7e-18  Score=192.30  Aligned_cols=132  Identities=17%  Similarity=0.247  Sum_probs=98.6

Q ss_pred             EcCCCcCCCCCCccCCCCCCCCEEEcccCCCCccCCCccCCCCccEEEccCCcccccCcccccCCCCCcEEeCCCCcccc
Q 004704          320 SMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSG  399 (735)
Q Consensus       320 ~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~  399 (735)
                      +++.|.+. ..+..+..++.|+.|+|++|.+....+..+.+++|+.|+|++|.++ .+|..+..+++|++|+|++|.|+ 
T Consensus       207 ~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-  283 (727)
T 4b8c_D          207 DDIENRMV-MPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-  283 (727)
T ss_dssp             ----------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-
T ss_pred             ccccccee-cChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-
Confidence            33344444 5577788888899999999888865555568888888999888888 67888888889999999999988 


Q ss_pred             cCChhhhCCCCccEEEccCCcCCCCCchhhhcCCCCCEEECcCCcCCCCCCchhhc
Q 004704          400 RIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFAN  455 (735)
Q Consensus       400 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~  455 (735)
                      .+|..++.+++|++|+|++|.++ .+|..|..+++|+.|+|++|++++.+|..+..
T Consensus       284 ~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~  338 (727)
T 4b8c_D          284 SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTE  338 (727)
T ss_dssp             SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHH
T ss_pred             ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhh
Confidence            77888888889999999999887 67777888899999999999988877776654

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.69  E-value=1.3e-16  Score=159.63  Aligned_cols=161  Identities=25%  Similarity=0.289  Sum_probs=104.5

Q ss_pred             cCCCCCCCCccccccCCCCCCCEEeCCCCcCCCCcchhhhCCCCCCEEeCCCCcccccCChhhhhcCCCCCeeecccccc
Q 004704            2 NLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNN   81 (735)
Q Consensus         2 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~~~~   81 (735)
                      +++++.+++. + .+.++++|++|++++|.++ .+| .++.+++|++|++++|++++..+   +.++++|++|++++|.+
T Consensus        25 ~l~~~~i~~~-~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~---l~~l~~L~~L~L~~N~l   97 (263)
T 1xeu_A           25 NLGKQSVTDL-V-SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP---LKDLTKLEELSVNRNRL   97 (263)
T ss_dssp             HHTCSCTTSE-E-CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG---GTTCSSCCEEECCSSCC
T ss_pred             HhcCCCcccc-c-chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh---hccCCCCCEEECCCCcc
Confidence            4566777653 2 5777788888888888777 344 67778888888888888774332   77777777777777766


Q ss_pred             cccccCCCCCCCCCeeEEEeeCCCCCCCCchhhhCCCCCCEEEccCCcCcccCchHHHhCCCCCcEEECcCCcCcccCcC
Q 004704           82 TLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQL  161 (735)
Q Consensus        82 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~  161 (735)
                      ... +.  +.. ++|++|++++|++++.  +.+..+++|++|++++|+++ .++ . +..+++|++|++++|.+++.  .
T Consensus        98 ~~l-~~--~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~-~~~-~-l~~l~~L~~L~L~~N~i~~~--~  166 (263)
T 1xeu_A           98 KNL-NG--IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLK-SIV-M-LGFLSKLEVLDLHGNEITNT--G  166 (263)
T ss_dssp             SCC-TT--CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCC-BCG-G-GGGCTTCCEEECTTSCCCBC--T
T ss_pred             CCc-Cc--ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCC-CCh-H-HccCCCCCEEECCCCcCcch--H
Confidence            442 22  112 6677777777776653  34666677777777777766 344 2 34666666666666666665  4


Q ss_pred             CcCCCCCcCEEEccCCcCC
Q 004704          162 PKAKHDFLHHLDISCNNFR  180 (735)
Q Consensus       162 ~~~~~~~L~~L~Ls~n~l~  180 (735)
                      .+..+++|++|++++|.+.
T Consensus       167 ~l~~l~~L~~L~l~~N~~~  185 (263)
T 1xeu_A          167 GLTRLKKVNWIDLTGQKCV  185 (263)
T ss_dssp             TSTTCCCCCEEEEEEEEEE
T ss_pred             HhccCCCCCEEeCCCCccc
Confidence            4556666666666666655

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.66  E-value=3e-17  Score=187.78  Aligned_cols=227  Identities=21%  Similarity=0.215  Sum_probs=122.8

Q ss_pred             CCCCEEEeeCCccCCCCCchhhhhcccCcEEEcCCCcCCCCCCccCCCCCCCCEEEcccCCCCccCCCcc-CCCCccEEE
Q 004704          289 TSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSL-NLSSVEHLS  367 (735)
Q Consensus       289 ~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~-~l~~L~~L~  367 (735)
                      +.++.|++.+|.+.. ++..     . ++.++|+.|.+.              .++++.|.+. .++..+ .++.|+.|+
T Consensus       173 ~~~~~l~L~~n~~~~-~~~~-----~-l~~l~Ls~~~i~--------------~~~~~~n~~~-~~~~~~~~l~~L~~L~  230 (727)
T 4b8c_D          173 PLTPKIELFANGKDE-ANQA-----L-LQHKKLSQYSID--------------EDDDIENRMV-MPKDSKYDDQLWHALD  230 (727)
T ss_dssp             -----------------------------------------------------------------------CCCCCCEEE
T ss_pred             CccceEEeeCCCCCc-chhh-----H-hhcCccCccccc--------------Ccccccccee-cChhhhccCCCCcEEE
Confidence            456666776666652 2221     1 555566655544              2344455555 334444 789999999


Q ss_pred             ccCCcccccCcccccCCCCCcEEeCCCCcccccCChhhhCCCCccEEEccCCcCCCCCchhhhcCCCCCEEECcCCcCCC
Q 004704          368 LQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSG  447 (735)
Q Consensus       368 l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  447 (735)
                      |++|.+. .+|..+..+++|++|+|++|.++ .+|..|..+++|++|+|++|.++ .+|..+..+++|+.|+|++|.++ 
T Consensus       231 Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-  306 (727)
T 4b8c_D          231 LSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-  306 (727)
T ss_dssp             CTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-
T ss_pred             CCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-
Confidence            9999998 56777779999999999999999 88999999999999999999999 77999999999999999999996 


Q ss_pred             CCCchhhcccccccccCCccCCCCCCCcccchhhhcccCCCCCCCccccchhhhhhhhhhhhccccceeEEEEecccccc
Q 004704          448 SIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEI  527 (735)
Q Consensus       448 ~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  527 (735)
                      .+|..|+.+                                                                       
T Consensus       307 ~lp~~~~~l-----------------------------------------------------------------------  315 (727)
T 4b8c_D          307 TLPWEFGNL-----------------------------------------------------------------------  315 (727)
T ss_dssp             CCCSSTTSC-----------------------------------------------------------------------
T ss_pred             ccChhhhcC-----------------------------------------------------------------------
Confidence            667665543                                                                       


Q ss_pred             ccCCcccccceEECCCCcccCCCCcccccccc-CCeEeCCCCcCcccCcccccCcCCCCEEeCCCC--------cccccC
Q 004704          528 YNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQA-ILALNLSNNSLSGSIPESFSNLKMIESLDISYN--------KLTGQI  598 (735)
Q Consensus       528 ~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~-L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N--------~l~~~~  598 (735)
                            ++|+.|+|++|.+++.+|..+..+.. +..|+|++|.+++.+|..      |+.|++++|        .+.+..
T Consensus       316 ------~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~------l~~l~l~~n~~~~~~~~~l~~~~  383 (727)
T 4b8c_D          316 ------CNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE------RRFIEINTDGEPQREYDSLQQST  383 (727)
T ss_dssp             ------TTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-----------------------------
T ss_pred             ------CCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc------cceeEeecccccccccCCccccc
Confidence                  56788999999999988888876533 234789999999988864      566777777        455555


Q ss_pred             CccccCCCCCCeEEcccCcCcccCCC
Q 004704          599 PPQLTALNFLSIFNVSYNNLSGRTPD  624 (735)
Q Consensus       599 p~~l~~l~~L~~L~ls~N~l~~~~p~  624 (735)
                      +..+..+..+....+++|-+.+....
T Consensus       384 ~~~~~~l~~~~~~~ls~Nil~~~~~~  409 (727)
T 4b8c_D          384 EHLATDLAKRTFTVLSYNTLCQHYAT  409 (727)
T ss_dssp             ------------------CCCGGGCC
T ss_pred             cchhhcccccceeeeeccccccccCc
Confidence            66667777888889999988754443

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.66  E-value=3.7e-15  Score=157.83  Aligned_cols=268  Identities=12%  Similarity=0.146  Sum_probs=185.1

Q ss_pred             CCCCCCEEeCCCCcccccCChhhhhcCCCCCeeecccccccccccCCCCCCCCCeeEEEeeCCCCCCCCchhhhCCCCCC
Q 004704           42 NLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLK  121 (735)
Q Consensus        42 ~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~  121 (735)
                      .+..++.+.+..+ ++ .++..+|.++ +|+.+.+..+  ...++..+|..+ +|+.+.+.+ .+......+|.+|++|+
T Consensus       111 ~~~~l~~i~ip~~-i~-~I~~~aF~~~-~L~~i~l~~~--i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~  183 (401)
T 4fdw_A          111 ILKGYNEIILPNS-VK-SIPKDAFRNS-QIAKVVLNEG--LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLK  183 (401)
T ss_dssp             ECSSCSEEECCTT-CC-EECTTTTTTC-CCSEEECCTT--CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCC
T ss_pred             ecCCccEEEECCc-cC-EehHhhcccC-CccEEEeCCC--ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCC
Confidence            3456666666543 33 3444556664 5777766543  445566666664 577777765 56656667777888888


Q ss_pred             EEEccCCcCcccCchHHHhCCCCCcEEECcCCcCcccCcCCcCCCCCcCEEEccCCcCCCcCChhHHHhcccCcEEECcC
Q 004704          122 YLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISK  201 (735)
Q Consensus       122 ~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~  201 (735)
                      .+++++|+++ .++...|. +.+|+.+.+..+ ++.+...+|..+++|+.+++..+ ++ .++...|.. .+|+.+.+.+
T Consensus       184 ~l~l~~n~l~-~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~-~I~~~aF~~-~~L~~i~lp~  257 (401)
T 4fdw_A          184 KADLSKTKIT-KLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VS-TIGQEAFRE-SGITTVKLPN  257 (401)
T ss_dssp             EEECTTSCCS-EECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CC-EECTTTTTT-CCCSEEEEET
T ss_pred             eeecCCCcce-EechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-cc-Ccccccccc-CCccEEEeCC
Confidence            8888877777 67777664 677888888743 66777777888888888888764 44 566666664 5788888843


Q ss_pred             CcCCCCCCcccCCCCCCCEEECCCcccc----CccchhhhhCCCCCCEEEccCCCCCCcCcccccCCCCCCEEEcccccc
Q 004704          202 NCFEGNIPYSAGEMKELSLLDLSRNYFS----GGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNF  277 (735)
Q Consensus       202 n~l~~~~~~~l~~l~~L~~L~L~~n~l~----~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l  277 (735)
                       .++.....+|..+++|+.+++.+|.+.    ..++...|.+|.+|+.+++. +.++.....+|.+|++|+.+.+..+ +
T Consensus       258 -~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l  334 (401)
T 4fdw_A          258 -GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-V  334 (401)
T ss_dssp             -TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-C
T ss_pred             -CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-c
Confidence             455445667778888888888776553    13667777888888888888 4477666778888888888888654 6


Q ss_pred             CccccccccCCCCCCEEEeeCCccCCCCCchhhhhcccCcEEEcCCCcC
Q 004704          278 SGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHL  326 (735)
Q Consensus       278 ~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l  326 (735)
                      +.....+|..+ +|+.+++.+|......+..+..++..++.|++..+.+
T Consensus       335 ~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~  382 (401)
T 4fdw_A          335 TQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV  382 (401)
T ss_dssp             CEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred             cEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence            65666778888 8888888888776444455566655578888876654

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.65  E-value=3e-15  Score=158.50  Aligned_cols=267  Identities=8%  Similarity=0.050  Sum_probs=188.3

Q ss_pred             hcCCCCCeeecccccccccccCCCCCCCCCeeEEEeeCCCCCCCCchhhhCCCCCCEEEccCCcCcccCchHHHhCCCCC
Q 004704           66 ANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKL  145 (735)
Q Consensus        66 ~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L  145 (735)
                      ..+..++.+.+..  ....++..+|..+ +|+.+.+..+ ++.+...+|.++ +|+.+++.. .++ .++...|.+|++|
T Consensus       110 ~~~~~l~~i~ip~--~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~-~I~~~aF~~c~~L  182 (401)
T 4fdw_A          110 EILKGYNEIILPN--SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLE-QLKEDIFYYCYNL  182 (401)
T ss_dssp             EECSSCSEEECCT--TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCC-EECSSTTTTCTTC
T ss_pred             EecCCccEEEECC--ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-Ccc-EehHHHhhCcccC
Confidence            3456777777753  2455666677765 6888888765 666666677774 688888875 565 6666667788888


Q ss_pred             cEEECcCCcCcccCcCCcCCCCCcCEEEccCCcCCCcCChhHHHhcccCcEEECcCCcCCCCCCcccCCCCCCCEEECCC
Q 004704          146 EVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSR  225 (735)
Q Consensus       146 ~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~  225 (735)
                      +.+++.+|.++.+....|. +.+|+.+.+..+ ++ .++...|..+++|+.+++..+ ++..-..+|.. .+|+.+.+. 
T Consensus       183 ~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~-~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-  256 (401)
T 4fdw_A          183 KKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LK-EIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-  256 (401)
T ss_dssp             CEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CC-EECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-
T ss_pred             CeeecCCCcceEechhhEe-ecccCEEEeCCc-hh-eehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-
Confidence            8888888888877777776 578888888754 55 677777777888888888765 44333445555 678888884 


Q ss_pred             ccccCccchhhhhCCCCCCEEEccCCCCC-----CcCcccccCCCCCCEEEccccccCccccccccCCCCCCEEEeeCCc
Q 004704          226 NYFSGGLSQSVVTGCFSLELLDLSNNNFE-----GQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNM  300 (735)
Q Consensus       226 n~l~~~~~~~~~~~l~~L~~L~L~~n~l~-----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~  300 (735)
                      +.++ .++...|.+|.+|+.+++.+|.+.     .....+|.+|++|+.+.+.+ .++.....+|..+++|+.+++..+ 
T Consensus       257 ~~i~-~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-  333 (401)
T 4fdw_A          257 NGVT-NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-  333 (401)
T ss_dssp             TTCC-EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-
T ss_pred             CCcc-EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-
Confidence            3454 667777788888888888877664     35567788888888888884 466566677788888888888654 


Q ss_pred             cCCCCCchhhhhcccCcEEEcCCCcCCCCCCccCCCCC-CCCEEEcccCCC
Q 004704          301 LSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLE-RLRILDISENRL  350 (735)
Q Consensus       301 l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~-~L~~L~L~~n~l  350 (735)
                      ++..-...|..+ . |+.+++.+|.+....+..|.+++ .++.+.+..+.+
T Consensus       334 l~~I~~~aF~~~-~-L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~  382 (401)
T 4fdw_A          334 VTQINFSAFNNT-G-IKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV  382 (401)
T ss_dssp             CCEECTTSSSSS-C-CCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred             ccEEcHHhCCCC-C-CCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence            542334455555 4 88888888877766667777774 677887776643

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.64  E-value=9.7e-16  Score=145.28  Aligned_cols=114  Identities=27%  Similarity=0.405  Sum_probs=102.8

Q ss_pred             cccceEECCCCcccCCCCccccccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccCCccccCCCCCCeEEc
Q 004704          534 NRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNV  613 (735)
Q Consensus       534 ~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~l  613 (735)
                      ++++.|++++|+++ .+|..|..+++|+.|+|++|.|++..+..|.++++|++|+|++|++++..|..|..+++|++|++
T Consensus        31 ~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L  109 (193)
T 2wfh_A           31 RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSL  109 (193)
T ss_dssp             TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred             CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEEC
Confidence            46788999999998 78899999999999999999999888889999999999999999999988899999999999999


Q ss_pred             ccCcCcccCCC-CCCCCccCCcccCCCCCCCCcccc
Q 004704          614 SYNNLSGRTPD-KGQFATFDESSYRGNPSLCAWLIQ  648 (735)
Q Consensus       614 s~N~l~~~~p~-~~~~~~~~~~~~~gN~~lc~~~~~  648 (735)
                      ++|++++..+. ...+..+....+.+||+.|+|.+.
T Consensus       110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l~  145 (193)
T 2wfh_A          110 HGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNMQ  145 (193)
T ss_dssp             CSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGGGH
T ss_pred             CCCCCCeeChhhhhcCccccEEEeCCCCeecCCcCH
Confidence            99999977664 455677788889999999988654

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.64  E-value=6.3e-15  Score=156.93  Aligned_cols=65  Identities=6%  Similarity=0.055  Sum_probs=34.3

Q ss_pred             cccCCCCCCCCCeeEEEeeCCCCCCCCchhhhCCCCCCEEEccCCcCcccCchHHHhCCCCCcEEECc
Q 004704           84 HVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLK  151 (735)
Q Consensus        84 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~  151 (735)
                      .++..+|..|.+|+.+.+.. .++.+...+|.+|++|+.+++..+ ++ .++...|.++++|+.+.+.
T Consensus        61 sIg~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~c~~L~~i~~p  125 (394)
T 4fs7_A           61 SIGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VK-MIGRCTFSGCYALKSILLP  125 (394)
T ss_dssp             EECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCCCCCC
T ss_pred             EhHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ce-Eccchhhcccccchhhccc
Confidence            34455566666666666643 344444555666666666666533 33 4444445555555554443

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.63  E-value=7.1e-16  Score=143.07  Aligned_cols=88  Identities=23%  Similarity=0.239  Sum_probs=56.2

Q ss_pred             cccceEECCCCcccCCCCccccccccCCeEeCCCCcCcccC-cccccCcCCCCEEeCCCCcccccCC---ccccCCCCCC
Q 004704          534 NRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSI-PESFSNLKMIESLDISYNKLTGQIP---PQLTALNFLS  609 (735)
Q Consensus       534 ~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~LdLs~N~l~~~~p---~~l~~l~~L~  609 (735)
                      ++|+.|++++|++++.+|..++.+++|+.|+|++|.+++.. +..++.+++|+.|++++|++++..+   ..+..+++|+
T Consensus        71 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~  150 (168)
T 2ell_A           71 PKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLT  150 (168)
T ss_dssp             SSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCC
T ss_pred             CCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCc
Confidence            45555666666666555655666667777777777776432 2566777777777777777775444   3666777777


Q ss_pred             eEEcccCcCccc
Q 004704          610 IFNVSYNNLSGR  621 (735)
Q Consensus       610 ~L~ls~N~l~~~  621 (735)
                      +|++++|.+...
T Consensus       151 ~L~l~~n~~~~~  162 (168)
T 2ell_A          151 YLDGYDREDQEA  162 (168)
T ss_dssp             EETTEETTSCBC
T ss_pred             EecCCCCChhhc
Confidence            777777766543

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.63  E-value=5.7e-16  Score=143.73  Aligned_cols=138  Identities=25%  Similarity=0.268  Sum_probs=119.5

Q ss_pred             CCCCcEEeCCCCccc-ccCChhhhCCCCccEEEccCCcCCCCCchhhhcCCCCCEEECcCCcCCCCCCchhhcccccccc
Q 004704          384 SCKLVTLNLRDNTFS-GRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVG  462 (735)
Q Consensus       384 ~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~  462 (735)
                      .++|+.|++++|.++ +.+|..+..+++|++|++++|.+++.  ..+..+++|+.|++++|++++.+|..+..       
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-------   93 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEK-------   93 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHH-------
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhh-------
Confidence            478999999999998 77888889999999999999999965  77899999999999999999777665543       


Q ss_pred             cCCccCCCCCCCcccchhhhcccCCCCCCCccccchhhhhhhhhhhhccccceeEEEEeccccccccCCcccccceEECC
Q 004704          463 SDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLS  542 (735)
Q Consensus       463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs  542 (735)
                                                                                            +++|+.|+++
T Consensus        94 ----------------------------------------------------------------------l~~L~~L~Ls  103 (168)
T 2ell_A           94 ----------------------------------------------------------------------LPNLTHLNLS  103 (168)
T ss_dssp             ----------------------------------------------------------------------CTTCCEEECB
T ss_pred             ----------------------------------------------------------------------CCCCCEEecc
Confidence                                                                                  2678889999


Q ss_pred             CCcccCCC-CccccccccCCeEeCCCCcCcccCc---ccccCcCCCCEEeCCCCcccccCCcc
Q 004704          543 CNQLTGEI-PSDIGQLQAILALNLSNNSLSGSIP---ESFSNLKMIESLDISYNKLTGQIPPQ  601 (735)
Q Consensus       543 ~N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~~p---~~~~~l~~L~~LdLs~N~l~~~~p~~  601 (735)
                      +|++++.. +..+..+++|+.|++++|.+++..+   ..+..+++|++||+++|.+. .+|.+
T Consensus       104 ~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~  165 (168)
T 2ell_A          104 GNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPDS  165 (168)
T ss_dssp             SSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCSS
T ss_pred             CCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hcccc
Confidence            99999532 2789999999999999999997665   58999999999999999998 56654

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.63  E-value=1.9e-15  Score=143.22  Aligned_cols=90  Identities=24%  Similarity=0.281  Sum_probs=73.6

Q ss_pred             cccceEECCCCcccCCCCccccccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccCCccccCCCCCCeEEc
Q 004704          534 NRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNV  613 (735)
Q Consensus       534 ~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~l  613 (735)
                      ++|+.|+|++|++++..+..|..+++|++|+|++|++++..|..|.++++|+.|+|++|++++..+..+..+++|+.|++
T Consensus        54 ~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  133 (193)
T 2wfh_A           54 KHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAI  133 (193)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred             cCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEe
Confidence            45666777777777666677888888888889999988888888899999999999999998776777888999999999


Q ss_pred             ccCcCcccCC
Q 004704          614 SYNNLSGRTP  623 (735)
Q Consensus       614 s~N~l~~~~p  623 (735)
                      ++|++.+.+.
T Consensus       134 ~~N~~~C~c~  143 (193)
T 2wfh_A          134 GANPLYCDCN  143 (193)
T ss_dssp             CSSCEECSGG
T ss_pred             CCCCeecCCc
Confidence            9999887554

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.61  E-value=8.1e-15  Score=156.12  Aligned_cols=329  Identities=14%  Similarity=0.145  Sum_probs=169.4

Q ss_pred             ccccCCCCCCCEEeCCCCcCCCCcchhhhCCCCCCEEeCCCCcccccCChhhhhcCCCCCeeecccccccccccCCCCCC
Q 004704           13 ITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLP   92 (735)
Q Consensus        13 ~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~   92 (735)
                      ..+|.++++|+.+.|..+ ++.+-..+|.+|++|+.+++..+ ++ .++..+|.++++|+.+.+..+  ...+...+|..
T Consensus        64 ~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~c~~L~~i~~p~~--l~~i~~~aF~~  138 (394)
T 4fs7_A           64 YAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VK-MIGRCTFSGCYALKSILLPLM--LKSIGVEAFKG  138 (394)
T ss_dssp             TTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCCCCCCTT--CCEECTTTTTT
T ss_pred             HHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ce-EccchhhcccccchhhcccCc--eeeecceeeec
Confidence            346667777777777533 55444556777777777777544 32 344456666666666655432  23334444544


Q ss_pred             CCCeeEEEeeCCCCCCCCchhhhCCCCCCEEEccCCcCcccCchHHHhCCCCCcEEECcCCcCcccCcCCcCCCCCcCEE
Q 004704           93 TSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHL  172 (735)
Q Consensus        93 ~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L  172 (735)
                      +..+......  .+......+|.++++|+.+++.++- . .++...|.++.+|+.+.+..+ ++.+...+|..+..|+.+
T Consensus       139 ~~~~~~~~~~--~~~~i~~~aF~~c~~L~~i~l~~~~-~-~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i  213 (394)
T 4fs7_A          139 CDFKEITIPE--GVTVIGDEAFATCESLEYVSLPDSM-E-TLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENM  213 (394)
T ss_dssp             CCCSEEECCT--TCCEECTTTTTTCTTCCEEECCTTC-C-EECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBC
T ss_pred             ccccccccCc--cccccchhhhcccCCCcEEecCCcc-c-eeccccccCCCCceEEEcCCC-ceEeCchhhcccccccee
Confidence            4333222211  1122233445555555555554432 2 344444445555555555443 333334444444444444


Q ss_pred             EccCCcCCCcCChhHHHhcccCcEEECcCCcCCCCCCcccCCCCCCCEEECCCccccCccchhhhhCCCCCCEEEccCCC
Q 004704          173 DISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNN  252 (735)
Q Consensus       173 ~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~  252 (735)
                      .+..+..                           .+.........|+.+.+.... + .+....+.++..++.+.+..+.
T Consensus       214 ~~~~~~~---------------------------~i~~~~~~~~~l~~i~ip~~~-~-~i~~~~f~~~~~l~~~~~~~~~  264 (394)
T 4fs7_A          214 EFPNSLY---------------------------YLGDFALSKTGVKNIIIPDSF-T-ELGKSVFYGCTDLESISIQNNK  264 (394)
T ss_dssp             CCCTTCC---------------------------EECTTTTTTCCCCEEEECTTC-C-EECSSTTTTCSSCCEEEECCTT
T ss_pred             ecCCCce---------------------------EeehhhcccCCCceEEECCCc-e-ecccccccccccceeEEcCCCc
Confidence            4433321                           112222333445555543321 1 2333444555666666665543


Q ss_pred             CCCcCcccccCCCCCCEEEccccccCccccccccCCCCCCEEEeeCCccCCCCCchhhhhcccCcEEEcCCCcCCCCCCc
Q 004704          253 FEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPV  332 (735)
Q Consensus       253 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~  332 (735)
                      .. .....|..+..++.+....+.+.   ...+..+.+|+.+.+..+ ++..-...+..+.. |+.+++..+ ++.....
T Consensus       265 ~~-i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~-L~~i~lp~~-v~~I~~~  337 (394)
T 4fs7_A          265 LR-IGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTS-LVSIDLPYL-VEEIGKR  337 (394)
T ss_dssp             CE-ECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTT-CCEECCCTT-CCEECTT
T ss_pred             ce-eeccccccccccceeccCceeec---cccccccccccccccccc-cceechhhhcCCCC-CCEEEeCCc-ccEEhHH
Confidence            22 33445556666666655544322   234555666666666543 33122233444444 777776543 5545566


Q ss_pred             cCCCCCCCCEEEcccCCCCccCCCcc-CCCCccEEEccCCcccccCcccccCCCCCcEE
Q 004704          333 QLNNLERLRILDISENRLSGPIASSL-NLSSVEHLSLQKNALNGLIPGELFRSCKLVTL  390 (735)
Q Consensus       333 ~l~~l~~L~~L~L~~n~l~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L  390 (735)
                      +|.+|.+|+.+++..+ ++......+ ++++|+.+++..+ ++ .+...|.+|++|+.+
T Consensus       338 aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I  393 (394)
T 4fs7_A          338 SFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKWI  393 (394)
T ss_dssp             TTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred             hccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence            7777777888777665 555555555 7778888877654 22 224567778777764

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.61  E-value=3.4e-15  Score=139.71  Aligned_cols=90  Identities=22%  Similarity=0.231  Sum_probs=68.7

Q ss_pred             cccceEECCCCcccCCCCccccccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccCCccccCCCCCCeEEc
Q 004704          534 NRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNV  613 (735)
Q Consensus       534 ~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~l  613 (735)
                      ++|+.|++++|++++..+..++.+++|++|+|++|++++..+..|+.+++|++|++++|++++..+..+..+++|++|++
T Consensus        52 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l  131 (177)
T 2o6r_A           52 TQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWL  131 (177)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred             ccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEe
Confidence            45566777777776555555677888888888888888777777788888888888888888666666778888888888


Q ss_pred             ccCcCcccCC
Q 004704          614 SYNNLSGRTP  623 (735)
Q Consensus       614 s~N~l~~~~p  623 (735)
                      ++|+++|.+|
T Consensus       132 ~~N~~~~~~~  141 (177)
T 2o6r_A          132 HTNPWDCSCP  141 (177)
T ss_dssp             CSSCBCCCHH
T ss_pred             cCCCeeccCc
Confidence            8888877665

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.60  E-value=8.3e-16  Score=139.46  Aligned_cols=81  Identities=23%  Similarity=0.283  Sum_probs=54.5

Q ss_pred             cccceEECCCCcccCCCCccccccccCCeEeCCCCcCccc-CcccccCcCCCCEEeCCCCcccccCC---ccccCCCCCC
Q 004704          534 NRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGS-IPESFSNLKMIESLDISYNKLTGQIP---PQLTALNFLS  609 (735)
Q Consensus       534 ~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~LdLs~N~l~~~~p---~~l~~l~~L~  609 (735)
                      ++|+.|++++|++++.+|..++.+++|++|++++|.+++. .|..++.+++|++|++++|++++..+   ..+..+++|+
T Consensus        64 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~  143 (149)
T 2je0_A           64 NKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLT  143 (149)
T ss_dssp             TTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCC
T ss_pred             CCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcc
Confidence            4556666666666655666666677777777777777753 23667777777777777777776555   4667777777


Q ss_pred             eEEcc
Q 004704          610 IFNVS  614 (735)
Q Consensus       610 ~L~ls  614 (735)
                      +||++
T Consensus       144 ~L~l~  148 (149)
T 2je0_A          144 YLDGY  148 (149)
T ss_dssp             EETTB
T ss_pred             cccCC
Confidence            77765

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.57  E-value=1.5e-14  Score=135.25  Aligned_cols=133  Identities=21%  Similarity=0.237  Sum_probs=107.0

Q ss_pred             CcEEeCCCCcccccCChhhhCCCCccEEEccCCcCCCCCchhhhcCCCCCEEECcCCcCCCCCCchhhcccccccccCCc
Q 004704          387 LVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDV  466 (735)
Q Consensus       387 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~  466 (735)
                      .+.+++++++++ .+|..+.  ++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..           
T Consensus         9 ~~~l~~~~~~l~-~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-----------   74 (177)
T 2o6r_A            9 GTEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDK-----------   74 (177)
T ss_dssp             TTEEECCSSCCS-SCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTT-----------
T ss_pred             CCEEEecCCCCc-cCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccC-----------
Confidence            467888888877 4554433  68889999999888766777888899999999999887554444433           


Q ss_pred             cCCCCCCCcccchhhhcccCCCCCCCccccchhhhhhhhhhhhccccceeEEEEeccccccccCCcccccceEECCCCcc
Q 004704          467 LNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQL  546 (735)
Q Consensus       467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l  546 (735)
                                                                                        +++|+.|++++|++
T Consensus        75 ------------------------------------------------------------------l~~L~~L~l~~N~l   88 (177)
T 2o6r_A           75 ------------------------------------------------------------------LTKLTILYLHENKL   88 (177)
T ss_dssp             ------------------------------------------------------------------CTTCCEEECCSSCC
T ss_pred             ------------------------------------------------------------------CCccCEEECCCCCc
Confidence                                                                              35788899999999


Q ss_pred             cCCCCccccccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccCC
Q 004704          547 TGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIP  599 (735)
Q Consensus       547 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p  599 (735)
                      ++..+..++.+++|++|++++|.+++..+..|..+++|++|+|++|.+++..|
T Consensus        89 ~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           89 QSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             cccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            97777778999999999999999997777778999999999999999997654

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.56  E-value=1.2e-14  Score=131.71  Aligned_cols=127  Identities=19%  Similarity=0.203  Sum_probs=103.5

Q ss_pred             cCcEEEcCCCcCC-CCCCccCCCCCCCCEEEcccCCCCccCCCccCCCCccEEEccCCcccccCcccccCCCCCcEEeCC
Q 004704          315 ELEILSMSKNHLE-GNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLR  393 (735)
Q Consensus       315 ~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~  393 (735)
                      +++.|++++|.++ +.+|..+..+++|++|++++|.+++. .....+++|++|++++|.+++.+|..+..+++|++|+++
T Consensus        18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls   96 (149)
T 2je0_A           18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLS   96 (149)
T ss_dssp             GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECT
T ss_pred             cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECC
Confidence            3888888888887 66777778888888888888888766 444478888888888888887778877788999999999


Q ss_pred             CCccccc-CChhhhCCCCccEEEccCCcCCCCCc---hhhhcCCCCCEEECcC
Q 004704          394 DNTFSGR-IPHQINEHSNLRFLLLGGNHLQGPIP---DQLCQLQKLAMMDLSR  442 (735)
Q Consensus       394 ~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~Ls~  442 (735)
                      +|++++. .+..+..+++|++|++++|++++..+   ..+..+++|+.||+++
T Consensus        97 ~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           97 GNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             TSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             CCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            9998853 34778889999999999999987655   5788899999998864

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.52  E-value=2.7e-16  Score=150.22  Aligned_cols=155  Identities=21%  Similarity=0.274  Sum_probs=112.7

Q ss_pred             ccCCCCCcEEeCCCCcccccCCh------hhhCCCCccEEEccCCcCCCCCchhhhcCCCCCEEECcCCcCCCCCCchhh
Q 004704          381 LFRSCKLVTLNLRDNTFSGRIPH------QINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFA  454 (735)
Q Consensus       381 ~~~~~~L~~L~l~~n~l~~~~~~------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~  454 (735)
                      +.....++.++++.+.+++..|.      .+..+++|++|++++|.+++ +| .+..+++|+.|++++|+++ .+|..+.
T Consensus        14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~   90 (198)
T 1ds9_A           14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDA   90 (198)
T ss_dssp             HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHH
T ss_pred             HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhh
Confidence            34445666666666666666555      78888888888888888875 56 7888888888888888886 4454332


Q ss_pred             cccccccccCCccCCCCCCCcccchhhhcccCCCCCCCccccchhhhhhhhhhhhccccceeEEEEeccccccccCCccc
Q 004704          455 NVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVN  534 (735)
Q Consensus       455 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  534 (735)
                      .                                                                             ++
T Consensus        91 ~-----------------------------------------------------------------------------~~   93 (198)
T 1ds9_A           91 V-----------------------------------------------------------------------------AD   93 (198)
T ss_dssp             H-----------------------------------------------------------------------------HH
T ss_pred             c-----------------------------------------------------------------------------CC
Confidence            2                                                                             24


Q ss_pred             ccceEECCCCcccCCCCccccccccCCeEeCCCCcCcccCc-ccccCcCCCCEEeCCCCcccccCCcc----------cc
Q 004704          535 RVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIP-ESFSNLKMIESLDISYNKLTGQIPPQ----------LT  603 (735)
Q Consensus       535 ~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~LdLs~N~l~~~~p~~----------l~  603 (735)
                      +|+.|++++|++++ +| .++.+++|+.|++++|.+++..+ ..+..+++|++|++++|++++.+|..          +.
T Consensus        94 ~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~  171 (198)
T 1ds9_A           94 TLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVK  171 (198)
T ss_dssp             HCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHH
T ss_pred             cCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHH
Confidence            67778888888874 45 57888888888888888885333 46888888888888888888776653          77


Q ss_pred             CCCCCCeEEcccCcCc
Q 004704          604 ALNFLSIFNVSYNNLS  619 (735)
Q Consensus       604 ~l~~L~~L~ls~N~l~  619 (735)
                      .+++|+.||  +|+++
T Consensus       172 ~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          172 RLPNLKKLD--GMPVD  185 (198)
T ss_dssp             HCSSCSEEC--CGGGT
T ss_pred             hCCCcEEEC--CcccC
Confidence            788888876  55554

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.50  E-value=2.6e-14  Score=133.53  Aligned_cols=86  Identities=20%  Similarity=0.195  Sum_probs=67.5

Q ss_pred             ccccceEECCCCcccCCCCccccccccCCeEeCCCCcCcccCcc--cccCcCCCCEEeCCCCcccccCCcc----ccCCC
Q 004704          533 VNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPE--SFSNLKMIESLDISYNKLTGQIPPQ----LTALN  606 (735)
Q Consensus       533 l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~--~~~~l~~L~~LdLs~N~l~~~~p~~----l~~l~  606 (735)
                      +++|+.|++++|++++..|..++.+++|+.|+|++|.++ .+|.  .++.+++|+.|++++|.++ .+|..    +..++
T Consensus        63 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~  140 (176)
T 1a9n_A           63 LRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVP  140 (176)
T ss_dssp             CSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCT
T ss_pred             CCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCC
Confidence            356777888888887544444588888899999999887 4555  7888899999999999988 45664    88889


Q ss_pred             CCCeEEcccCcCcc
Q 004704          607 FLSIFNVSYNNLSG  620 (735)
Q Consensus       607 ~L~~L~ls~N~l~~  620 (735)
                      +|++||+++|....
T Consensus       141 ~L~~Ld~~~n~~~~  154 (176)
T 1a9n_A          141 QVRVLDFQKVKLKE  154 (176)
T ss_dssp             TCSEETTEECCHHH
T ss_pred             ccceeCCCcCCHHH
Confidence            99999999888754

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.50  E-value=7.8e-14  Score=129.16  Aligned_cols=91  Identities=23%  Similarity=0.218  Sum_probs=75.6

Q ss_pred             cccceEECCCCcccCCCCccccccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccCCccccCCCCCCeEEc
Q 004704          534 NRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNV  613 (735)
Q Consensus       534 ~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~l  613 (735)
                      +.++.|+|++|++++..|..|+.+++|++|+|++|+|++..|..|.++++|++|+|++|++++..|..+..+++|++|++
T Consensus        30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  109 (170)
T 3g39_A           30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL  109 (170)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence            45677888888888777888888888888888888888777777888888888888888888777777888888888888


Q ss_pred             ccCcCcccCCC
Q 004704          614 SYNNLSGRTPD  624 (735)
Q Consensus       614 s~N~l~~~~p~  624 (735)
                      ++|++++.++.
T Consensus       110 ~~N~~~c~c~~  120 (170)
T 3g39_A          110 LNNPWDCACSD  120 (170)
T ss_dssp             CSSCBCTTBGG
T ss_pred             CCCCCCCCchh
Confidence            88888876653

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.49  E-value=3.3e-14  Score=132.76  Aligned_cols=133  Identities=17%  Similarity=0.182  Sum_probs=86.8

Q ss_pred             ccCCCCCcEEeCCCCcccccCChhhhCCCCccEEEccCCcCCCCCchhhhcCCCCCEEECcCCcCCCCCCchhhcccccc
Q 004704          381 LFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWR  460 (735)
Q Consensus       381 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~  460 (735)
                      +..+.+|+.|++++|+++ .+|......++|++|++++|.+++.  +.+..+++|+.|++++|++++..|..+..     
T Consensus        15 ~~~~~~L~~L~l~~n~l~-~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~-----   86 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQA-----   86 (176)
T ss_dssp             EECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHH-----
T ss_pred             cCCcCCceEEEeeCCCCc-hhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhc-----
Confidence            445666677777777666 3343222233677777777777643  45666777777777777776443332232     


Q ss_pred             cccCCccCCCCCCCcccchhhhcccCCCCCCCccccchhhhhhhhhhhhccccceeEEEEeccccccccCCcccccceEE
Q 004704          461 VGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLD  540 (735)
Q Consensus       461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~Ld  540 (735)
                                                                                              +++|+.|+
T Consensus        87 ------------------------------------------------------------------------l~~L~~L~   94 (176)
T 1a9n_A           87 ------------------------------------------------------------------------LPDLTELI   94 (176)
T ss_dssp             ------------------------------------------------------------------------CTTCCEEE
T ss_pred             ------------------------------------------------------------------------CCCCCEEE
Confidence                                                                                    24566677


Q ss_pred             CCCCcccCCCCc--cccccccCCeEeCCCCcCcccCcc----cccCcCCCCEEeCCCCccc
Q 004704          541 LSCNQLTGEIPS--DIGQLQAILALNLSNNSLSGSIPE----SFSNLKMIESLDISYNKLT  595 (735)
Q Consensus       541 Ls~N~l~~~~p~--~l~~l~~L~~L~Ls~N~l~~~~p~----~~~~l~~L~~LdLs~N~l~  595 (735)
                      +++|+++ .+|.  .++.+++|+.|++++|.++ .+|.    .++.+++|+.||+++|.+.
T Consensus        95 L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           95 LTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             CCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             CCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            7777775 4555  6777888888888888887 4555    3788888888888888765

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.49  E-value=1.1e-13  Score=128.15  Aligned_cols=108  Identities=23%  Similarity=0.278  Sum_probs=97.8

Q ss_pred             cceEECCCCcccCCCCccccccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccCCccccCCCCCCeEEccc
Q 004704          536 VTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSY  615 (735)
Q Consensus       536 L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~  615 (735)
                      .+.+++++|+++ .+|..+.  ++|+.|+|++|+|++..|..|+++++|++|||++|+|++..|..|..+++|++|++++
T Consensus        11 ~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A           11 GTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND   87 (170)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence            467999999999 6887774  8999999999999998899999999999999999999988888889999999999999


Q ss_pred             CcCcccCCC-CCCCCccCCcccCCCCCCCCcc
Q 004704          616 NNLSGRTPD-KGQFATFDESSYRGNPSLCAWL  646 (735)
Q Consensus       616 N~l~~~~p~-~~~~~~~~~~~~~gN~~lc~~~  646 (735)
                      |++++..|. ...+..+....+.+||+.|.|.
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~  119 (170)
T 3g39_A           88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS  119 (170)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred             CccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence            999988775 5667788888999999999875

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.46  E-value=2.2e-13  Score=126.48  Aligned_cols=107  Identities=21%  Similarity=0.246  Sum_probs=81.3

Q ss_pred             ceEECCCCcccCCCCccccccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccCCccccCCCCCCeEEcccC
Q 004704          537 TGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYN  616 (735)
Q Consensus       537 ~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N  616 (735)
                      +.+++++|+++ .+|..+.  ++|+.|+|++|+|++.+|..|+++++|++|||++|+|++..+..|..+++|++|+|++|
T Consensus        15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            45788888886 6776664  77888888888888777778888888888888888888666666778888888888888


Q ss_pred             cCcccCCC-CCCCCccCCcccCCCCCCCCcc
Q 004704          617 NLSGRTPD-KGQFATFDESSYRGNPSLCAWL  646 (735)
Q Consensus       617 ~l~~~~p~-~~~~~~~~~~~~~gN~~lc~~~  646 (735)
                      +|++..|. ...+..+....+.+||+.|.+.
T Consensus        92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~  122 (174)
T 2r9u_A           92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCECR  122 (174)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred             ccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence            88876664 4556667777788888887764

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.46  E-value=2.3e-13  Score=126.36  Aligned_cols=91  Identities=22%  Similarity=0.223  Sum_probs=83.5

Q ss_pred             cccceEECCCCcccCCCCccccccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccCCccccCCCCCCeEEc
Q 004704          534 NRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNV  613 (735)
Q Consensus       534 ~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~l  613 (735)
                      +.|+.|+|++|++++..|..|+.+++|+.|+|++|+|++..+..|.++++|++|||++|+|++..+..+..+++|++|++
T Consensus        33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L  112 (174)
T 2r9u_A           33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL  112 (174)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred             CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence            46788999999999888999999999999999999999877777899999999999999999777777999999999999


Q ss_pred             ccCcCcccCCC
Q 004704          614 SYNNLSGRTPD  624 (735)
Q Consensus       614 s~N~l~~~~p~  624 (735)
                      ++|++.+.++.
T Consensus       113 ~~N~~~c~~~~  123 (174)
T 2r9u_A          113 YNNPWDCECRD  123 (174)
T ss_dssp             CSSCBCTTBGG
T ss_pred             CCCCccccccc
Confidence            99999987654

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.43  E-value=2.2e-15  Score=143.85  Aligned_cols=151  Identities=24%  Similarity=0.265  Sum_probs=115.3

Q ss_pred             CccEEEccCCcccccCc------ccccCCCCCcEEeCCCCcccccCChhhhCCCCccEEEccCCcCCCCCchhhhcCCCC
Q 004704          362 SVEHLSLQKNALNGLIP------GELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKL  435 (735)
Q Consensus       362 ~L~~L~l~~n~l~~~~~------~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  435 (735)
                      .++.++++.+.+.+..|      ..+..+++|++|++++|.+++ +| .+..+++|++|++++|.++ .+|..+..+++|
T Consensus        19 ~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L   95 (198)
T 1ds9_A           19 SVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTL   95 (198)
T ss_dssp             CCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHC
T ss_pred             cccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcC
Confidence            34444444444444443      378888999999999999985 66 8888899999999999998 677788888899


Q ss_pred             CEEECcCCcCCCCCCchhhcccccccccCCccCCCCCCCcccchhhhcccCCCCCCCccccchhhhhhhhhhhhccccce
Q 004704          436 AMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERV  515 (735)
Q Consensus       436 ~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  515 (735)
                      +.|++++|++++ +| .+..                                                            
T Consensus        96 ~~L~L~~N~l~~-l~-~~~~------------------------------------------------------------  113 (198)
T 1ds9_A           96 EELWISYNQIAS-LS-GIEK------------------------------------------------------------  113 (198)
T ss_dssp             SEEEEEEEECCC-HH-HHHH------------------------------------------------------------
T ss_pred             CEEECcCCcCCc-CC-cccc------------------------------------------------------------
Confidence            999999999875 33 2322                                                            


Q ss_pred             eEEEEeccccccccCCcccccceEECCCCcccCCCC-ccccccccCCeEeCCCCcCcccCccc----------ccCcCCC
Q 004704          516 EIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIP-SDIGQLQAILALNLSNNSLSGSIPES----------FSNLKMI  584 (735)
Q Consensus       516 ~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~----------~~~l~~L  584 (735)
                                       +++|+.|++++|++++..+ ..+..+++|+.|++++|.+++.+|..          +..+++|
T Consensus       114 -----------------l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L  176 (198)
T 1ds9_A          114 -----------------LVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNL  176 (198)
T ss_dssp             -----------------HHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSC
T ss_pred             -----------------CCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCc
Confidence                             2567889999999984222 46888999999999999998776653          8899999


Q ss_pred             CEEeCCCCcccc
Q 004704          585 ESLDISYNKLTG  596 (735)
Q Consensus       585 ~~LdLs~N~l~~  596 (735)
                      +.||  +|.++.
T Consensus       177 ~~Ld--~~~i~~  186 (198)
T 1ds9_A          177 KKLD--GMPVDV  186 (198)
T ss_dssp             SEEC--CGGGTT
T ss_pred             EEEC--CcccCH
Confidence            9998  777763

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.42  E-value=1.2e-11  Score=131.38  Aligned_cols=123  Identities=11%  Similarity=0.141  Sum_probs=70.1

Q ss_pred             CcEEEcCCCcCCCCCCccCCCCCCCCEEEcccCCCCccCCCcc-CCCCccEEEccCCcccccCcccccCCCCCcEEeCCC
Q 004704          316 LEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSL-NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRD  394 (735)
Q Consensus       316 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~  394 (735)
                      |+.+.+..+... ....+|.+++.|+.+.+. +.+.......| ++.+|+.+.+..+ ++.+...+|.+|.+|+.+.+..
T Consensus       267 L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~  343 (394)
T 4gt6_A          267 LASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPS  343 (394)
T ss_dssp             CCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECT
T ss_pred             ccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECc
Confidence            666666544322 445566666677777664 33444444445 6677777777543 4445566777777888877765


Q ss_pred             CcccccCChhhhCCCCccEEEccCCcCCCCCchhhhcCCCCCEEECcCCcC
Q 004704          395 NTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKF  445 (735)
Q Consensus       395 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l  445 (735)
                      + ++.....+|.+|++|+.+++.++...   ...+..+..|+.+.+..+.+
T Consensus       344 s-v~~I~~~aF~~C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          344 S-VTKIPESAFSNCTALNNIEYSGSRSQ---WNAISTDSGLQNLPVAPGSI  390 (394)
T ss_dssp             T-CCBCCGGGGTTCTTCCEEEESSCHHH---HHTCBCCCCC----------
T ss_pred             c-cCEEhHhHhhCCCCCCEEEECCceee---hhhhhccCCCCEEEeCCCCE
Confidence            4 55455567777888888887776543   13566677777777766544

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.41  E-value=7.9e-12  Score=132.92  Aligned_cols=331  Identities=11%  Similarity=0.144  Sum_probs=183.8

Q ss_pred             ccccCCCC-CCCEEeCCCCcCCCCcchhhhCCCCCCEEeCCCCc---ccccCChhhhhcCCCCCeeecccccccccccCC
Q 004704           13 ITCLKNLT-RLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNN---FEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTE   88 (735)
Q Consensus        13 ~~~~~~l~-~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~---l~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~   88 (735)
                      ..+|.+++ .|+.+.+..+ ++.+-..+|.+|++|+.+.++.|.   ++ .+...+|.++.+|+.+.+..+  ...++..
T Consensus        56 ~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~-~Ig~~aF~~c~~L~~i~~~~~--~~~I~~~  131 (394)
T 4gt6_A           56 DRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVK-KIGRQAFMFCSELTDIPILDS--VTEIDSE  131 (394)
T ss_dssp             TTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCC-EECTTTTTTCTTCCBCGGGTT--CSEECTT
T ss_pred             HhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeee-EechhhchhcccceeeccCCc--cceehhh
Confidence            45677774 5888888754 665666788888888888887653   33 355567888888887776543  3456666


Q ss_pred             CCCCCCCeeEEEeeCCCCCCCCchhhhCCCCCCEEEccCCcCcccCchHHHhCCCCCcEEECcCCcCcccCcCCcCCCCC
Q 004704           89 NWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDF  168 (735)
Q Consensus        89 ~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~  168 (735)
                      +|..+.+|+.+.+.. .+......+|..+..|+.+.+..+ ++ .+....| ....|+.+.+..+ ++.+...+|..+..
T Consensus       132 aF~~c~~L~~i~lp~-~~~~I~~~~F~~c~~L~~i~~~~~-~~-~I~~~aF-~~~~l~~i~ip~~-~~~i~~~af~~c~~  206 (394)
T 4gt6_A          132 AFHHCEELDTVTIPE-GVTSVADGMFSYCYSLHTVTLPDS-VT-AIEERAF-TGTALTQIHIPAK-VTRIGTNAFSECFA  206 (394)
T ss_dssp             TTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTT-TTCCCSEEEECTT-CCEECTTTTTTCTT
T ss_pred             hhhhhcccccccccc-eeeeecccceecccccccccccce-ee-Eeccccc-cccceeEEEECCc-ccccccchhhhccc
Confidence            777788888888764 344445566777778888877654 33 4555555 3456777777654 23334456667777


Q ss_pred             cCEEEccCCcCCCcCChhHHHhcccCcEEECcCCcCCCCCCcccCCCCCCCEEECCCccccCccchhhhhCCCCCCEEEc
Q 004704          169 LHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDL  248 (735)
Q Consensus       169 L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L  248 (735)
                      ++......+... .+...++........-           ...+.....+..+.+... ++ .+....|.+|..|+.+.+
T Consensus       207 l~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~ip~~-v~-~i~~~aF~~c~~L~~i~l  272 (394)
T 4gt6_A          207 LSTITSDSESYP-AIDNVLYEKSANGDYA-----------LIRYPSQREDPAFKIPNG-VA-RIETHAFDSCAYLASVKM  272 (394)
T ss_dssp             CCEEEECCSSSC-BSSSCEEEECTTSCEE-----------EEECCTTCCCSEEECCTT-EE-EECTTTTTTCSSCCEEEC
T ss_pred             cceecccccccc-cccceeeccccccccc-----------ccccccccccceEEcCCc-ce-EcccceeeecccccEEec
Confidence            777666554433 2222221110000000           001112223333433322 11 334445566666777766


Q ss_pred             cCCCCCCcCcccccCCCCCCEEEccccccCccccccccCCCCCCEEEeeCCccCCCCCchhhhhcccCcEEEcCCCcCCC
Q 004704          249 SNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEG  328 (735)
Q Consensus       249 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~  328 (735)
                      ..+.. .....+|.++++|+.+.+. +.++.....+|..+.+|+.+++..+ ++..-...|..+.+ |+.+.+..+ ++.
T Consensus       273 p~~~~-~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~-L~~i~ip~s-v~~  347 (394)
T 4gt6_A          273 PDSVV-SIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQ-LERIAIPSS-VTK  347 (394)
T ss_dssp             CTTCC-EECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTT-CCEEEECTT-CCB
T ss_pred             ccccc-eecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCC-CCEEEECcc-cCE
Confidence            54433 2444566667777777665 3344344456666777777777543 33122334445544 777777544 554


Q ss_pred             CCCccCCCCCCCCEEEcccCCCCccCCCccCCCCccEEEccCCcc
Q 004704          329 NVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNAL  373 (735)
Q Consensus       329 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l  373 (735)
                      ....+|.+|++|+.+++.++....  ...+.+.+|+.+.+..+.+
T Consensus       348 I~~~aF~~C~~L~~i~~~~~~~~~--~~~~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          348 IPESAFSNCTALNNIEYSGSRSQW--NAISTDSGLQNLPVAPGSI  390 (394)
T ss_dssp             CCGGGGTTCTTCCEEEESSCHHHH--HTCBCCCCC----------
T ss_pred             EhHhHhhCCCCCCEEEECCceeeh--hhhhccCCCCEEEeCCCCE
Confidence            556677777788888777764321  2233566677776655443

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.34  E-value=2.3e-12  Score=134.77  Aligned_cols=108  Identities=21%  Similarity=0.248  Sum_probs=90.2

Q ss_pred             eEECCCC-cccCCCCccccccccCCeEeCCC-CcCcccCcccccCcCCCCEEeCCCCcccccCCccccCCCCCCeEEccc
Q 004704          538 GLDLSCN-QLTGEIPSDIGQLQAILALNLSN-NSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSY  615 (735)
Q Consensus       538 ~LdLs~N-~l~~~~p~~l~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~  615 (735)
                      .++++++ +++ .+|. ++.+++|+.|+|++ |.|++..|..|+++++|+.|||++|+|++..|..|.++++|++|+|++
T Consensus        12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~   89 (347)
T 2ifg_A           12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (347)
T ss_dssp             CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence            4788888 888 5888 88899999999996 999988888899999999999999999988888899999999999999


Q ss_pred             CcCcccCCCCCCCCccCCcccCCCCCCCCccc
Q 004704          616 NNLSGRTPDKGQFATFDESSYRGNPSLCAWLI  647 (735)
Q Consensus       616 N~l~~~~p~~~~~~~~~~~~~~gN~~lc~~~~  647 (735)
                      |+|++..|.......+....+.+|++.|+|.+
T Consensus        90 N~l~~~~~~~~~~~~L~~l~l~~N~~~c~c~l  121 (347)
T 2ifg_A           90 NALESLSWKTVQGLSLQELVLSGNPLHCSCAL  121 (347)
T ss_dssp             SCCSCCCSTTTCSCCCCEEECCSSCCCCCGGG
T ss_pred             CccceeCHHHcccCCceEEEeeCCCccCCCcc
Confidence            99987776643333477778889999988754

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.22  E-value=2e-11  Score=127.50  Aligned_cols=89  Identities=20%  Similarity=0.225  Sum_probs=81.3

Q ss_pred             cccceEECCC-CcccCCCCccccccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccCCccccCCCCCCeEE
Q 004704          534 NRVTGLDLSC-NQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFN  612 (735)
Q Consensus       534 ~~L~~LdLs~-N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~  612 (735)
                      ++|+.|+|++ |++++..|..|+.+++|+.|+|++|+|++.+|..|+++++|+.|||++|+|++..|..+..++ |+.|+
T Consensus        31 ~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~  109 (347)
T 2ifg_A           31 ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELV  109 (347)
T ss_dssp             SCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEE
T ss_pred             CCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEE
Confidence            5688899996 999988888999999999999999999999999999999999999999999987777777777 99999


Q ss_pred             cccCcCcccCC
Q 004704          613 VSYNNLSGRTP  623 (735)
Q Consensus       613 ls~N~l~~~~p  623 (735)
                      +++|++.+.++
T Consensus       110 l~~N~~~c~c~  120 (347)
T 2ifg_A          110 LSGNPLHCSCA  120 (347)
T ss_dssp             CCSSCCCCCGG
T ss_pred             eeCCCccCCCc
Confidence            99999987654

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.22  E-value=5.6e-13  Score=139.72  Aligned_cols=68  Identities=13%  Similarity=0.054  Sum_probs=32.7

Q ss_pred             CCCCCCCEEECCCccccCccc---hhhhhCCCCCCEEEccCCCCCCc----CcccccCCCCCCEEEccccccCcc
Q 004704          213 GEMKELSLLDLSRNYFSGGLS---QSVVTGCFSLELLDLSNNNFEGQ----FFSEYMNLTRLRHLYFENNNFSGK  280 (735)
Q Consensus       213 ~~l~~L~~L~L~~n~l~~~~~---~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~  280 (735)
                      ...++|++|+|++|.+++...   ...+..+++|++|+|++|.+++.    ++..+...++|++|+|++|.++..
T Consensus       180 ~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~  254 (372)
T 3un9_A          180 AGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSE  254 (372)
T ss_dssp             HTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHH
T ss_pred             hcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHH
Confidence            444555555555555542111   11123344566666666655532    222333455666666666666543

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.21  E-value=9.2e-13  Score=138.04  Aligned_cols=160  Identities=14%  Similarity=0.107  Sum_probs=79.7

Q ss_pred             CCCcEEECcCCcCcccCcCCc----C-CCCCcCEEEccCCcCCCcCChhHHHhcccCcEEECcCCcCCCCCCccc-----
Q 004704          143 PKLEVLLLKNNSFSGILQLPK----A-KHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSA-----  212 (735)
Q Consensus       143 ~~L~~L~L~~n~l~~~~~~~~----~-~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l-----  212 (735)
                      +.|++|++++|.++......+    . ..++|++|+|++|.+++.....+...+++|++|++++|.++......+     
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~  151 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL  151 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence            345555555555443221111    1 235677777777776544444445455677777777777654322222     


Q ss_pred             CCCCCCCEEECCCccccCccchh---hhhCCCCCCEEEccCCCCCCcC----cccccCCCCCCEEEccccccCcc----c
Q 004704          213 GEMKELSLLDLSRNYFSGGLSQS---VVTGCFSLELLDLSNNNFEGQF----FSEYMNLTRLRHLYFENNNFSGK----I  281 (735)
Q Consensus       213 ~~l~~L~~L~L~~n~l~~~~~~~---~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~----~  281 (735)
                      ...++|++|+|++|.++......   .+..+++|++|+|++|.+++..    +..+...++|++|+|++|.++..    +
T Consensus       152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l  231 (372)
T 3un9_A          152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL  231 (372)
T ss_dssp             STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred             hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence            23466777777777665311111   1234556666666666655321    23334444555555555555422    1


Q ss_pred             cccccCCCCCCEEEeeCCccC
Q 004704          282 KDGLLSSTSLQVLDISNNMLS  302 (735)
Q Consensus       282 ~~~l~~~~~L~~L~l~~n~l~  302 (735)
                      ...+...++|++|++++|.++
T Consensus       232 ~~~L~~~~~L~~L~Ls~N~i~  252 (372)
T 3un9_A          232 ARAAREHPSLELLHLYFNELS  252 (372)
T ss_dssp             HHHHHHCSSCCEEECTTSSCC
T ss_pred             HHHHHhCCCCCEEeccCCCCC
Confidence            122223344445555444444

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.16  E-value=2.2e-09  Score=113.37  Aligned_cols=136  Identities=10%  Similarity=0.088  Sum_probs=63.8

Q ss_pred             CcEEEcCCCcCCCCCCccCCCCCCCCEEEcccCCCCccCCCcc-CCCCccEEEccCCcccccCcccccCCCCCcEEeCCC
Q 004704          316 LEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSL-NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRD  394 (735)
Q Consensus       316 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~  394 (735)
                      ++.+.+..+ +......+|.++..|+.+.+..+ ++......+ ++.+|+.+.+..+ +.......|.+|.+|+.+.+.+
T Consensus       219 l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~  295 (379)
T 4h09_A          219 LKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDN  295 (379)
T ss_dssp             CSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECC
T ss_pred             cceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccc
Confidence            444444332 22233344455555555555433 332223333 4555555555332 3333344555555666666555


Q ss_pred             CcccccCChhhhCCCCccEEEccCCcCCCCCchhhhcCCCCCEEECcCCcCCCCCCchhhcc
Q 004704          395 NTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANV  456 (735)
Q Consensus       395 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l  456 (735)
                      +.++.....+|.+|.+|+.+++..+ ++.+-..+|.+|++|+.+.+..+ ++..-..+|.++
T Consensus       296 ~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c  355 (379)
T 4h09_A          296 SAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGS  355 (379)
T ss_dssp             TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTS
T ss_pred             cccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCC
Confidence            5555444455555666666665433 33233445556666666555433 332333344443

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.07  E-value=1.1e-08  Score=108.16  Aligned_cols=304  Identities=10%  Similarity=0.060  Sum_probs=203.5

Q ss_pred             hhhhCCCCCCEEEccCCcCcccCchHHHhCCCCCcEEECcCCcCcccCcCCcCCCCCcCEEEccCCcCCCcCChhHHHhc
Q 004704          112 DFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVIL  191 (735)
Q Consensus       112 ~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l  191 (735)
                      .++....+|+.+.+... ++ .+++..|.+|.+|+.+.+..+ ++.+...+|..+ +|+.+.+..+ ++ .+....|..+
T Consensus        40 ~~~~~~~~i~~v~ip~~-vt-~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~-~I~~~aF~~~  113 (379)
T 4h09_A           40 PWYKDRDRISEVRVNSG-IT-SIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VK-KFGDYVFQGT  113 (379)
T ss_dssp             TTGGGGGGCSEEEECTT-EE-EECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CC-EECTTTTTTC
T ss_pred             cccccccCCEEEEeCCC-cc-ChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-ee-EeccceeccC
Confidence            45666778999988753 65 788888889999999999754 777777788877 6888877654 44 5666666644


Q ss_pred             ccCcEEECcCCcCCCCCCcccCCCCCCCEEECCCccccCccchhhhhCCCCCCEEEccCCCCCC------------cCcc
Q 004704          192 QKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEG------------QFFS  259 (735)
Q Consensus       192 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~------------~~~~  259 (735)
                       +|+.+.+..+ +.......+.. .+++.+.+..+ ++ .+....+..+..++.+.+..+....            ....
T Consensus       114 -~L~~i~lp~~-~~~i~~~~F~~-~~l~~~~~~~~-v~-~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (379)
T 4h09_A          114 -DLDDFEFPGA-TTEIGNYIFYN-SSVKRIVIPKS-VT-TIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILE  188 (379)
T ss_dssp             -CCSEEECCTT-CCEECTTTTTT-CCCCEEEECTT-CC-EECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEE
T ss_pred             -CcccccCCCc-ccccccccccc-ceeeeeeccce-ee-ccccchhcccccccccccccccceeecccceecccccceec
Confidence             7898888765 33122333443 35666666544 22 4455556678888888776554321            1222


Q ss_pred             cccCCCCCCEEEccccccCccccccccCCCCCCEEEeeCCccCCCCCchhhhhcccCcEEEcCCCcCCCCCCccCCCCCC
Q 004704          260 EYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLER  339 (735)
Q Consensus       260 ~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~  339 (735)
                      .+.....+....+...... .....+.....|+.+.+..+ +.......+..+.. |+.+.+..+ ++.....+|.++.+
T Consensus       189 ~~~~~~~~~~~~~~~~~~~-i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~-L~~i~lp~~-v~~I~~~aF~~~~~  264 (379)
T 4h09_A          189 SYPAAKTGTEFTIPSTVKT-VTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKA-LDEIAIPKN-VTSIGSFLLQNCTA  264 (379)
T ss_dssp             ECCTTCCCSEEECCTTCCE-ECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSS-CCEEEECTT-CCEECTTTTTTCTT
T ss_pred             cccccccccccccccceeE-Eeecccccccccceeeeccc-eeEEccccccCCcc-ceEEEcCCC-ccEeCccccceeeh
Confidence            3444555666655443322 34455667778888887654 33122334455555 888888776 55566778888889


Q ss_pred             CCEEEcccCCCCccCCCcc-CCCCccEEEccCCcccccCcccccCCCCCcEEeCCCCcccccCChhhhCCCCccEEEccC
Q 004704          340 LRILDISENRLSGPIASSL-NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGG  418 (735)
Q Consensus       340 L~~L~L~~n~l~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~  418 (735)
                      |+.+.+..+ +.......+ ++.+|+.+.+.++.++.+...+|.+|.+|+.+.+..+ ++.....+|.+|.+|+.+.+..
T Consensus       265 l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~  342 (379)
T 4h09_A          265 LKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPK  342 (379)
T ss_dssp             CCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred             hcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECC
Confidence            999988654 444444555 7889999999888888777788889999999999765 6655667888899999888865


Q ss_pred             CcCCCCCchhhhcCC
Q 004704          419 NHLQGPIPDQLCQLQ  433 (735)
Q Consensus       419 n~l~~~~~~~~~~l~  433 (735)
                      + ++.+-..+|.+++
T Consensus       343 ~-v~~I~~~aF~~c~  356 (379)
T 4h09_A          343 S-ITLIESGAFEGSS  356 (379)
T ss_dssp             T-CCEECTTTTTTSS
T ss_pred             c-cCEEchhHhhCCC
Confidence            5 4434456676654

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.77  E-value=3.8e-09  Score=109.54  Aligned_cols=86  Identities=20%  Similarity=0.271  Sum_probs=57.7

Q ss_pred             CCCCcCEEEccCCcCCCcCChhHHH--hcccCcEEECcCCcCCCC----CCcccCCCCCCCEEECCCccccCccchhhhh
Q 004704          165 KHDFLHHLDISCNNFRGKLPHNMGV--ILQKLMYMDISKNCFEGN----IPYSAGEMKELSLLDLSRNYFSGGLSQSVVT  238 (735)
Q Consensus       165 ~~~~L~~L~Ls~n~l~~~~~~~~~~--~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~  238 (735)
                      .+++|++|++++|.+.+..+..++.  .+++|++|+|+.|.+.+.    ++..+..+++|+.|++++|.++...-..+..
T Consensus       250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~  329 (362)
T 2ra8_A          250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK  329 (362)
T ss_dssp             TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHH
T ss_pred             CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHH
Confidence            4678888888888776444444442  367889999988888753    3344456789999999999887443333322


Q ss_pred             CCCCCCEEEccCCC
Q 004704          239 GCFSLELLDLSNNN  252 (735)
Q Consensus       239 ~l~~L~~L~L~~n~  252 (735)
                      .+  ...++++.+.
T Consensus       330 al--g~~~~~~~~~  341 (362)
T 2ra8_A          330 SL--PMKIDVSDSQ  341 (362)
T ss_dssp             HC--CSEEECCSBC
T ss_pred             Hc--CCEEEecCCc
Confidence            12  4668888876

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.76  E-value=9.6e-09  Score=106.47  Aligned_cols=102  Identities=16%  Similarity=0.100  Sum_probs=57.7

Q ss_pred             CeeEEEeeCCCCCC-C-------CchhhhCCCCCCEEEccCCcCc---------ccCchHHHhCCCCCcEEECcCCcCcc
Q 004704           95 QLIVLGLTKCNLNG-S-------YPDFLLHQYHLKYLDLSHNKLV---------GNFPTWLLRNNPKLEVLLLKNNSFSG  157 (735)
Q Consensus        95 ~L~~L~L~~n~l~~-~-------~~~~l~~l~~L~~L~Ls~n~l~---------~~~p~~~~~~l~~L~~L~L~~n~l~~  157 (735)
                      .++.|.+......+ .       +..+...+++|+.|.+.++...         +.+. .+...+|+|+.|.+++|.-..
T Consensus       108 ~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~-~ll~~~P~L~~L~L~g~~~l~  186 (362)
T 2ra8_A          108 SLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLS-PVLDAMPLLNNLKIKGTNNLS  186 (362)
T ss_dssp             GCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCH-HHHHTCTTCCEEEEECCBTCB
T ss_pred             hcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHH-HHHhcCCCCcEEEEeCCCCce
Confidence            45666666554431 1       1233456778888888655321         1233 334577888888888773111


Q ss_pred             cCcCCcCCCCCcCEEEccCCcCCCcCChhHHH-hcccCcEEECc
Q 004704          158 ILQLPKAKHDFLHHLDISCNNFRGKLPHNMGV-ILQKLMYMDIS  200 (735)
Q Consensus       158 ~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~-~l~~L~~L~L~  200 (735)
                      . + .+ .+++|++|++..+.+.......+.. .+++|++|+|+
T Consensus       187 l-~-~~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~  227 (362)
T 2ra8_A          187 I-G-KK-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY  227 (362)
T ss_dssp             C-C-SC-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred             e-c-cc-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence            1 1 12 3678888888877665332223332 35777777764

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.43  E-value=5.7e-08  Score=90.75  Aligned_cols=119  Identities=13%  Similarity=0.092  Sum_probs=69.5

Q ss_pred             ccccCCCCCCCEEeCCCC-cCCCC----cchhhhCCCCCCEEeCCCCcccccCC---hhhhhcCCCCCeeeccccccccc
Q 004704           13 ITCLKNLTRLKILDISSN-QLNGS----LPSVISNLTSLEYLDLSHNNFEGMFP---LSSLANHSKLEGLLLSTRNNTLH   84 (735)
Q Consensus        13 ~~~~~~l~~L~~L~Ls~n-~i~~~----~p~~~~~l~~L~~L~Ls~n~l~~~~~---~~~~~~l~~L~~L~L~~~~~~~~   84 (735)
                      ...+...+.|++|+|++| .+...    +..++...++|++|+|++|.+.+.-.   ...+...+.|++|+         
T Consensus        29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~---------   99 (185)
T 1io0_A           29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLN---------   99 (185)
T ss_dssp             HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEE---------
T ss_pred             HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEE---------
Confidence            345667778888888887 77642    34455667778888888887753211   12233344455554         


Q ss_pred             ccCCCCCCCCCeeEEEeeCCCCCCC----CchhhhCCCCCCEEEc--cCCcCcccCch---HHHhCCCCCcEEECcCCcC
Q 004704           85 VKTENWLPTSQLIVLGLTKCNLNGS----YPDFLLHQYHLKYLDL--SHNKLVGNFPT---WLLRNNPKLEVLLLKNNSF  155 (735)
Q Consensus        85 ~~~~~~~~~~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L--s~n~l~~~~p~---~~~~~l~~L~~L~L~~n~l  155 (735)
                                      |++|.+...    +..++...++|++|+|  ++|.+......   ......++|++|++++|.+
T Consensus       100 ----------------L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i  163 (185)
T 1io0_A          100 ----------------VESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  163 (185)
T ss_dssp             ----------------CCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             ----------------CcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence                            455554432    3445566667777777  66777533211   1223456777777777766


Q ss_pred             c
Q 004704          156 S  156 (735)
Q Consensus       156 ~  156 (735)
                      .
T Consensus       164 ~  164 (185)
T 1io0_A          164 G  164 (185)
T ss_dssp             H
T ss_pred             C
Confidence            4

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.36  E-value=2.5e-07  Score=90.74  Aligned_cols=64  Identities=27%  Similarity=0.351  Sum_probs=27.9

Q ss_pred             cccceEECCCCcccC--CCCccccccccCCeEeCCCCcCcccCcccccCcC--CCCEEeCCCCcccccCC
Q 004704          534 NRVTGLDLSCNQLTG--EIPSDIGQLQAILALNLSNNSLSGSIPESFSNLK--MIESLDISYNKLTGQIP  599 (735)
Q Consensus       534 ~~L~~LdLs~N~l~~--~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~--~L~~LdLs~N~l~~~~p  599 (735)
                      +.|+.|+|++|++++  .+|..++.+++|+.|+|++|+|++.  +.+..++  +|++|+|++|.+.+.+|
T Consensus       170 ~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~  237 (267)
T 3rw6_A          170 PELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR  237 (267)
T ss_dssp             TTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred             CCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence            444445555555443  2233344444455555555544432  1122222  44444444444444333

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.30  E-value=1.1e-07  Score=93.30  Aligned_cols=89  Identities=21%  Similarity=0.272  Sum_probs=67.5

Q ss_pred             cccce--EECCCCccc---CCCCccccccccCCeEeCCCCcCcc--cCcccccCcCCCCEEeCCCCcccccCCccccCCC
Q 004704          534 NRVTG--LDLSCNQLT---GEIPSDIGQLQAILALNLSNNSLSG--SIPESFSNLKMIESLDISYNKLTGQIPPQLTALN  606 (735)
Q Consensus       534 ~~L~~--LdLs~N~l~---~~~p~~l~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~  606 (735)
                      +.|..  ++++.|...   +.++....++++|++|+|++|+|++  .+|..++.+++|+.|||++|++++.  ..+..+.
T Consensus       141 p~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~  218 (267)
T 3rw6_A          141 PDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIK  218 (267)
T ss_dssp             HHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGT
T ss_pred             cchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcc
Confidence            34444  677777433   2222223568899999999999998  4567788999999999999999975  3445555


Q ss_pred             --CCCeEEcccCcCcccCCC
Q 004704          607 --FLSIFNVSYNNLSGRTPD  624 (735)
Q Consensus       607 --~L~~L~ls~N~l~~~~p~  624 (735)
                        .|++|+|++|++++.+|.
T Consensus       219 ~l~L~~L~L~~Npl~~~~~~  238 (267)
T 3rw6_A          219 GLKLEELWLDGNSLCDTFRD  238 (267)
T ss_dssp             TSCCSEEECTTSTTGGGCSS
T ss_pred             cCCcceEEccCCcCccccCc
Confidence              999999999999987763

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.26  E-value=2.6e-07  Score=86.24  Aligned_cols=113  Identities=19%  Similarity=0.198  Sum_probs=70.1

Q ss_pred             CCCCCCCCEEEcccC-CCCccCCC----cc-CCCCccEEEccCCccccc----CcccccCCCCCcEEeCCCCccccc---
Q 004704          334 LNNLERLRILDISEN-RLSGPIAS----SL-NLSSVEHLSLQKNALNGL----IPGELFRSCKLVTLNLRDNTFSGR---  400 (735)
Q Consensus       334 l~~l~~L~~L~L~~n-~l~~~~~~----~~-~l~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~l~~n~l~~~---  400 (735)
                      +...+.|++|+|++| .+......    .. ..++|++|+|++|.+...    +...+...++|++|+|++|.|...   
T Consensus        32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~  111 (185)
T 1io0_A           32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL  111 (185)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred             HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence            334455555555555 44321111    11 345566666666665432    233445567788888888888753   


Q ss_pred             -CChhhhCCCCccEEEc--cCCcCCCC----CchhhhcCCCCCEEECcCCcCC
Q 004704          401 -IPHQINEHSNLRFLLL--GGNHLQGP----IPDQLCQLQKLAMMDLSRNKFS  446 (735)
Q Consensus       401 -~~~~~~~l~~L~~L~L--~~n~l~~~----~~~~~~~l~~L~~L~Ls~N~l~  446 (735)
                       +...+...++|++|+|  ++|.+...    +...+...+.|+.|++++|.+.
T Consensus       112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          112 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence             3456666778888888  77888743    3455666788999999998875

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.82  E-value=4.2e-06  Score=75.86  Aligned_cols=88  Identities=18%  Similarity=0.198  Sum_probs=49.5

Q ss_pred             CCCCEEeCCCCcCCCCcchhhhCCCCCCEEeCCCCc-ccccCChhhhhcCCCCCeeecccccccccccCCCCCCCCCeeE
Q 004704           20 TRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNN-FEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIV   98 (735)
Q Consensus        20 ~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~   98 (735)
                      .+|++|||+++.|+..--..+.+|++|++|+|++|. +++.- ...+..++                     ..+++|++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~g-L~~L~~~~---------------------~~~~~L~~  118 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGC-LERLSQLE---------------------NLQKSMLE  118 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHH-HHHHHTCH---------------------HHHHHCCE
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHH-HHHHHhcc---------------------cccCCCCE
Confidence            345666666665554444445555666666665553 33210 01111110                     00236777


Q ss_pred             EEeeCCC-CCCCCchhhhCCCCCCEEEccCCc
Q 004704           99 LGLTKCN-LNGSYPDFLLHQYHLKYLDLSHNK  129 (735)
Q Consensus        99 L~L~~n~-l~~~~~~~l~~l~~L~~L~Ls~n~  129 (735)
                      |+|++|. ++...-..+.++++|++|+++++.
T Consensus       119 L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~  150 (176)
T 3e4g_A          119 MEIISCGNVTDKGIIALHHFRNLKYLFLSDLP  150 (176)
T ss_dssp             EEEESCTTCCHHHHHHGGGCTTCCEEEEESCT
T ss_pred             EEcCCCCcCCHHHHHHHhcCCCCCEEECCCCC
Confidence            7777774 766555667788888899888875

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.79  E-value=9.8e-06  Score=73.41  Aligned_cols=86  Identities=8%  Similarity=-0.053  Sum_probs=61.9

Q ss_pred             CCCeeEEEeeCCCCCCCCchhhhCCCCCCEEEccCCc-CcccCchHHHhC---CCCCcEEECcCCc-CcccCcCCcCCCC
Q 004704           93 TSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNK-LVGNFPTWLLRN---NPKLEVLLLKNNS-FSGILQLPKAKHD  167 (735)
Q Consensus        93 ~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~p~~~~~~---l~~L~~L~L~~n~-l~~~~~~~~~~~~  167 (735)
                      ..+|++|++++|.++...-..+..+++|++|+|++|. +++..-..+...   +++|++|++++|. ++...-..+..++
T Consensus        60 ~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~  139 (176)
T 3e4g_A           60 KYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR  139 (176)
T ss_dssp             CCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred             CceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence            3479999999999887777778889999999999985 664433333311   2468888888874 7654444556678


Q ss_pred             CcCEEEccCCc
Q 004704          168 FLHHLDISCNN  178 (735)
Q Consensus       168 ~L~~L~Ls~n~  178 (735)
                      +|++|+++++.
T Consensus       140 ~L~~L~L~~c~  150 (176)
T 3e4g_A          140 NLKYLFLSDLP  150 (176)
T ss_dssp             TCCEEEEESCT
T ss_pred             CCCEEECCCCC
Confidence            88888888775

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.08  E-value=0.00025  Score=65.42  Aligned_cols=118  Identities=14%  Similarity=0.093  Sum_probs=57.3

Q ss_pred             cCCCCCCCEEeCCCC-cCCC----CcchhhhCCCCCCEEeCCCCcccccCC---hhhhhcCCCCCeeecccccccccccC
Q 004704           16 LKNLTRLKILDISSN-QLNG----SLPSVISNLTSLEYLDLSHNNFEGMFP---LSSLANHSKLEGLLLSTRNNTLHVKT   87 (735)
Q Consensus        16 ~~~l~~L~~L~Ls~n-~i~~----~~p~~~~~l~~L~~L~Ls~n~l~~~~~---~~~~~~l~~L~~L~L~~~~~~~~~~~   87 (735)
                      +.+-+.|++|+|++| +|..    .+.+++..-+.|+.|+|++|+|.+.-.   ...+..-+.|++|+|++|.+......
T Consensus        37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~  116 (197)
T 1pgv_A           37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA  116 (197)
T ss_dssp             HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred             HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence            344556777777764 5542    233445556667777777776642211   12233344455555444443322211


Q ss_pred             CCCCCCCCeeEEEeeCCCCCCCCchhhhCCCCCCEEEccCC---cCccc----CchHHHhCCCCCcEEECcCCcC
Q 004704           88 ENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHN---KLVGN----FPTWLLRNNPKLEVLLLKNNSF  155 (735)
Q Consensus        88 ~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n---~l~~~----~p~~~~~~l~~L~~L~L~~n~l  155 (735)
                                           .+.+++..-+.|++|+|++|   .+...    +.+. ...-+.|+.|+++.|.+
T Consensus       117 ---------------------ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~a-L~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          117 ---------------------RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMA-IEENESLLRVGISFASM  169 (197)
T ss_dssp             ---------------------HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHH-HHHCSSCCEEECCCCCH
T ss_pred             ---------------------HHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHH-HHhCCCcCeEeccCCCc
Confidence                                 12334445555666666644   22211    1122 23455677777665543

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.06  E-value=0.00092  Score=57.61  Aligned_cols=37  Identities=27%  Similarity=0.200  Sum_probs=18.7

Q ss_pred             CCEEeCCCCcccccCCccccCCCCCCeEEcccCcCcc
Q 004704          584 IESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSG  620 (735)
Q Consensus       584 L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~  620 (735)
                      |+.|||++|+|+...+..|..+++|+.|+|++|++.+
T Consensus        33 l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C   69 (130)
T 3rfe_A           33 TTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC   69 (130)
T ss_dssp             CSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred             CCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence            4445555555554444444555555555555555543

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.98  E-value=0.0012  Score=56.82  Aligned_cols=57  Identities=21%  Similarity=0.268  Sum_probs=42.7

Q ss_pred             ceEECCCCccc-CCCCccccccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCccc
Q 004704          537 TGLDLSCNQLT-GEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLT  595 (735)
Q Consensus       537 ~~LdLs~N~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~  595 (735)
                      ..+|.++++++ ..+|..+.  .+|+.|+|++|+|+...++.|..+++|+.|+|++|.+.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            35888888886 35665543  36888888888888766777888888888888888765

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.82  E-value=0.00056  Score=63.12  Aligned_cols=38  Identities=16%  Similarity=0.160  Sum_probs=17.4

Q ss_pred             ccCcEEECcCC-cCCC----CCCcccCCCCCCCEEECCCcccc
Q 004704          192 QKLMYMDISKN-CFEG----NIPYSAGEMKELSLLDLSRNYFS  229 (735)
Q Consensus       192 ~~L~~L~L~~n-~l~~----~~~~~l~~l~~L~~L~L~~n~l~  229 (735)
                      +.|++|+|++| .+..    .+...+..-+.|+.|+|++|.+.
T Consensus        41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~ig   83 (197)
T 1pgv_A           41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAIS   83 (197)
T ss_dssp             SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCB
T ss_pred             CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCC
Confidence            34555555553 4432    12223344445555555555554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	735
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-19
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-15
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-07
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	9e-07
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	8e-16
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-15
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-14
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	8e-13
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-12
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	8e-08
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	7e-06
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-04
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	6e-04
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-15
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-14
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	8e-14
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-12
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-12
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	6e-10
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-07
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-05
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-04
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-11
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-11
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-10
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	4e-10
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	4e-10
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	5e-10
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-07
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	6e-05
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	8e-10
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-08
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	7e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	7e-04
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-09
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	8e-09
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	1e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	3e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	5e-08
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	5e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.002
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.003
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	9e-08
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.004
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-07
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-07
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-07
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	5e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	5e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	2e-06
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	5e-06
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.001
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	4e-06
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	6e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	2e-05
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.002
d1m9la_	198	c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree	2e-05
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	4e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	4e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	5e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.001
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.002
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	4e-05
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	5e-05
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	5e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.002
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	5e-05

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 88.5 bits (218), Expect = 2e-19
 Identities = 65/365 (17%), Positives = 110/365 (30%), Gaps = 28/365 (7%)

Query: 16  LKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLL 75
             +L ++  L      +  S+   +  L +L  ++ S+N    + PL +L     +    
Sbjct: 40  QTDLDQVTTLQADRLGIK-SIDG-VEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNN 97

Query: 76  LSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFP 135
               + T      N    +           L        L        D+S    + +  
Sbjct: 98  NQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQ 157

Query: 136 TWLLRNNPKLEVLLLKNNSF--------SGILQLPKAKHDFLHHLDISCNNFRGKLPHNM 187
                N       L    +                 AK   L  L  + N      P  +
Sbjct: 158 QLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGI 217

Query: 188 GVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLD 247
              L +L    ++ N  +     +   +  L+ LDL+ N  S     S   G   L  L 
Sbjct: 218 LTNLDEL---SLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAPLS---GLTKLTELK 269

Query: 248 LSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPH 307
           L  N       S    LT L +L    N          L   +L  L +  N +S   P 
Sbjct: 270 LGANQISN--ISPLAGLTALTNLELNENQLEDISPISNL--KNLTYLTLYFNNISDISP- 324

Query: 308 WMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLS 367
            + + +  L+ L  + N +       L NL  +  L    N++S     + NL+ +  L 
Sbjct: 325 -VSSLTK-LQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTPLA-NLTRITQLG 379

Query: 368 LQKNA 372
           L   A
Sbjct: 380 LNDQA 384

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 76.2 bits (186), Expect = 3e-15
 Identities = 68/415 (16%), Positives = 130/415 (31%), Gaps = 65/415 (15%)

Query: 215 MKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFEN 274
           + E     L +   +  +SQ+ +     +  L       +         L  L  + F N
Sbjct: 21  LAEKMKTVLGKTNVTDTVSQTDLD---QVTTLQADRLGIKS--IDGVEYLNNLTQINFSN 75

Query: 275 NNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGN--------FSSELEILSMSKNHL 326
           N  +      L + T L  + ++NN ++   P              +   +I  +     
Sbjct: 76  NQLTDIT--PLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTN 133

Query: 327 EGNVPVQLNNLERLRILDISENRLSGPIASSLN----LSSVEHLSLQKNALNGLIPGELF 382
              + +  N +  +  L    +       + +     L+++  L     + N +    + 
Sbjct: 134 LNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVL 193

Query: 383 RSCKLV-TLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLS 441
                + +L   +N  S   P  I   +NL  L L GN L+      L  L  L  +DL+
Sbjct: 194 AKLTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQLKDI--GTLASLTNLTDLDLA 249

Query: 442 RNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRW 501
            N+ S   P      L+            KL + ++        L    +          
Sbjct: 250 NNQISNLAPLSGLTKLTEL----------KLGANQISNISPLAGLTALTNLELNENQLED 299

Query: 502 LSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAIL 561
                                    I   SN+  +T L L  N ++   P  +  L  + 
Sbjct: 300 -------------------------ISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQ 332

Query: 562 ALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYN 616
            L  +NN +S     S +NL  I  L   +N+++   P  L  L  ++   ++  
Sbjct: 333 RLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 52.3 bits (124), Expect = 1e-07
 Identities = 64/361 (17%), Positives = 130/361 (36%), Gaps = 34/361 (9%)

Query: 263 NLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMS 322
           +L ++  L  +         DG+    +L  ++ SNN L+   P  + N +  L  + M+
Sbjct: 42  DLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDITP--LKNLTK-LVDILMN 96

Query: 323 KNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELF 382
            N +    P+          L  ++     P+ +  NL+ +E  S   + ++ L      
Sbjct: 97  NNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSL 156

Query: 383 RSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSR 442
           +              +     +  +           +  +      L +L  L  +  + 
Sbjct: 157 QQLSFGNQVTDLKPLANLTTLERLDI----------SSNKVSDISVLAKLTNLESLIATN 206

Query: 443 NKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWL 502
           N+ S   P      L         LNG++L           G+L +  +   +      +
Sbjct: 207 NQISDITPLGILTNLDELS-----LNGNQLKDI--------GTLASLTNLTDLDLANNQI 253

Query: 503 SALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILA 562
           S L   + + +  E++        I   + +  +T L+L+ NQ   E  S I  L+ +  
Sbjct: 254 SNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQ--LEDISPISNLKNLTY 311

Query: 563 LNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRT 622
           L L  N++S   P   S+L  ++ L  + NK++      L  L  ++  +  +N +S  T
Sbjct: 312 LTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLT 367

Query: 623 P 623
           P
Sbjct: 368 P 368

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 49.2 bits (116), Expect = 9e-07
 Identities = 20/71 (28%), Positives = 41/71 (57%), Gaps = 4/71 (5%)

Query: 1   MNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMF 60
           + L  N I    I+ + +LT+L+ L  ++N+++    S ++NLT++ +L   HN    + 
Sbjct: 312 LTLYFNNISD--ISPVSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLT 367

Query: 61  PLSSLANHSKL 71
           PL++L   ++L
Sbjct: 368 PLANLTRITQL 378

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 76.7 bits (187), Expect = 8e-16
 Identities = 64/269 (23%), Positives = 102/269 (37%), Gaps = 11/269 (4%)

Query: 335 NNLERLRILDISENRLSG--PIASSL-NLSSVEHLSLQKNA-LNGLIPGELFRSCKLVTL 390
               R+  LD+S   L    PI SSL NL  +  L +     L G IP  + +  +L  L
Sbjct: 47  TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL 106

Query: 391 NLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIP 450
            +     SG IP  +++   L  L    N L G +P  +  L  L  +    N+ SG+IP
Sbjct: 107 YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166

Query: 451 PCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAA 510
             + +            N  +L                + S N + G    L   +K   
Sbjct: 167 DSYGSFSKLFTSMTISRN--RLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQ 224

Query: 511 IDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSL 570
                +   A        + +        DL  N++ G +P  + QL+ + +LN+S N+L
Sbjct: 225 KIHLAKNSLAFDLGKVGLSKNLNGL----DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL 280

Query: 571 SGSIPESFSNLKMIESLDISYNKLTGQIP 599
            G IP+   NL+  +    + NK     P
Sbjct: 281 CGEIPQ-GGNLQRFDVSAYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 75.6 bits (184), Expect = 2e-15
 Identities = 51/269 (18%), Positives = 95/269 (35%), Gaps = 10/269 (3%)

Query: 13  ITCLKN--LTRLKILDISSNQLNG--SLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANH 68
           + C  +    R+  LD+S   L     +PS ++NL  L +L +   N        ++A  
Sbjct: 41  VLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKL 100

Query: 69  SKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHN 128
           ++L  L ++   N      +       L+ L  +   L+G+ P  +    +L  +    N
Sbjct: 101 TQLHYLYIT-HTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGN 159

Query: 129 KLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMG 188
           ++ G  P      +     + +  N  +G +    A  +                     
Sbjct: 160 RISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGS 219

Query: 189 VILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDL 248
               + +++  +   F+          K L+ LDL  N   G L Q  +T    L  L++
Sbjct: 220 DKNTQKIHLAKNSLAFDLGKVG---LSKNLNGLDLRNNRIYGTLPQG-LTQLKFLHSLNV 275

Query: 249 SNNNFEGQFFSEYMNLTRLRHLYFENNNF 277
           S NN  G+   +  NL R     + NN  
Sbjct: 276 SFNNLCGE-IPQGGNLQRFDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 72.1 bits (175), Expect = 3e-14
 Identities = 52/255 (20%), Positives = 80/255 (31%), Gaps = 4/255 (1%)

Query: 118 YHLKYLDLSHNKLVGNFPTWL-LRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISC 176
           Y +  LDLS   L   +P    L N P L  L +   +       P        H     
Sbjct: 50  YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYIT 109

Query: 177 NNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSV 236
           +        +    ++ L+ +D S N   G +P S   +  L  +    N  SG +  S 
Sbjct: 110 HTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSY 169

Query: 237 VTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDI 296
            +       + +S N   G+    + NL         N              +      I
Sbjct: 170 GSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVL---FGSDKNTQKI 226

Query: 297 SNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIAS 356
                S          S  L  L +  N + G +P  L  L+ L  L++S N L G I  
Sbjct: 227 HLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286

Query: 357 SLNLSSVEHLSLQKN 371
             NL   +  +   N
Sbjct: 287 GGNLQRFDVSAYANN 301

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 67.9 bits (164), Expect = 8e-13
 Identities = 59/266 (22%), Positives = 94/266 (35%), Gaps = 13/266 (4%)

Query: 383 RSCKLVTLNLRDNTFSGR--IPHQINEHSNLRFLLLGGNH-LQGPIPDQLCQLQKLAMMD 439
           ++ ++  L+L          IP  +     L FL +GG + L GPIP  + +L +L  + 
Sbjct: 48  QTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLY 107

Query: 440 LSRNKFSGSIPP--CFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFG 497
           ++    SG+IP        L     S + L+G+   S      +   +   NR S  +  
Sbjct: 108 ITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPD 167

Query: 498 MWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQL 557
            +   S L           +  +          +  N           +     S +   
Sbjct: 168 SYGSFSKLFTS--------MTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGS 219

Query: 558 QAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNN 617
                      +            K +  LD+  N++ G +P  LT L FL   NVS+NN
Sbjct: 220 DKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNN 279

Query: 618 LSGRTPDKGQFATFDESSYRGNPSLC 643
           L G  P  G    FD S+Y  N  LC
Sbjct: 280 LCGEIPQGGNLQRFDVSAYANNKCLC 305

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 67.1 bits (162), Expect = 1e-12
 Identities = 66/303 (21%), Positives = 108/303 (35%), Gaps = 27/303 (8%)

Query: 152 NNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYS 211
           N ++ G+L     +   +++LD+S  N     P                       IP S
Sbjct: 35  NRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYP-----------------------IPSS 71

Query: 212 AGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLY 271
              +  L+ L +       G     +     L  L +++ N  G        +  L  L 
Sbjct: 72  LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLD 131

Query: 272 FENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVP 331
           F  N  SG +   + S  +L  +    N +SG IP   G+FS     +++S+N L     
Sbjct: 132 FSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT-GKI 190

Query: 332 VQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLN 391
                   L  +D+S N L G  +                       G++  S  L  L+
Sbjct: 191 PPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLD 250

Query: 392 LRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKF--SGSI 449
           LR+N   G +P  + +   L  L +  N+L G IP Q   LQ+  +   + NK      +
Sbjct: 251 LRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSPL 309

Query: 450 PPC 452
           P C
Sbjct: 310 PAC 312

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 52.4 bits (124), Expect = 8e-08
 Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 1/64 (1%)

Query: 1   MNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMF 60
           ++L  N I   L   L  L  L  L++S N L G +P    NL   +    ++N      
Sbjct: 249 LDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCGS 307

Query: 61  PLSS 64
           PL +
Sbjct: 308 PLPA 311

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 46.3 bits (108), Expect = 7e-06
 Identities = 49/256 (19%), Positives = 80/256 (31%), Gaps = 50/256 (19%)

Query: 247 DLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGK--IKDGLLSSTSLQVLDISNNMLSGH 304
           D  N  + G          R+ +L     N      I   L +   L  L I        
Sbjct: 32  DCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVG 91

Query: 305 IPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSL-NLSSV 363
                    ++L  L ++  ++ G +P  L+ ++ L  LD S N LSG +  S+ +L ++
Sbjct: 92  PIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNL 151

Query: 364 EHLSLQKNALNGLIPGELFRSCKLVTLNLRDN---------------------------- 395
             ++   N ++G IP       KL T                                  
Sbjct: 152 VGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEG 211

Query: 396 -------------------TFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLA 436
                                      ++    NL  L L  N + G +P  L QL+ L 
Sbjct: 212 DASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLH 271

Query: 437 MMDLSRNKFSGSIPPC 452
            +++S N   G IP  
Sbjct: 272 SLNVSFNNLCGEIPQG 287

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 42.4 bits (98), Expect = 1e-04
 Identities = 19/80 (23%), Positives = 26/80 (32%), Gaps = 2/80 (2%)

Query: 84  HVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNP 143
                    +  L  L L    + G+ P  L     L  L++S N L G  P     N  
Sbjct: 234 AFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ--GGNLQ 291

Query: 144 KLEVLLLKNNSFSGILQLPK 163
           + +V    NN       LP 
Sbjct: 292 RFDVSAYANNKCLCGSPLPA 311

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 40.1 bits (92), Expect = 6e-04
 Identities = 31/99 (31%), Positives = 46/99 (46%), Gaps = 3/99 (3%)

Query: 529 NGSNVNRVTGLDLSCNQLTG--EIPSDIGQLQAILALNLSNN-SLSGSIPESFSNLKMIE 585
             +   RV  LDLS   L     IPS +  L  +  L +    +L G IP + + L  + 
Sbjct: 45  TDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLH 104

Query: 586 SLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPD 624
            L I++  ++G IP  L+ +  L   + SYN LSG  P 
Sbjct: 105 YLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPP 143

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 75.1 bits (183), Expect = 3e-15
 Identities = 48/258 (18%), Positives = 84/258 (32%), Gaps = 14/258 (5%)

Query: 2   NLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFP 61
           +L+ N I        KNL  L  L + +N+++   P   + L  LE L LS N  +    
Sbjct: 37  DLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE--- 93

Query: 62  LSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLK 121
           L      +  E  +       +     N L    ++ LG      +G           L 
Sbjct: 94  LPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLS 153

Query: 122 YLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRG 181
           Y+ ++   +    P  L    P L  L L  N  + +        + L  L +S N+   
Sbjct: 154 YIRIADTNI-TTIPQGLP---PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA 209

Query: 182 KLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSG-----GLSQSV 236
              +        L  + ++ N     +P    + K + ++ L  N  S            
Sbjct: 210 V-DNGSLANTPHLRELHLN-NNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGY 267

Query: 237 VTGCFSLELLDLSNNNFE 254
            T   S   + L +N  +
Sbjct: 268 NTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 72.8 bits (177), Expect = 2e-14
 Identities = 42/267 (15%), Positives = 83/267 (31%), Gaps = 16/267 (5%)

Query: 91  LPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLL 150
           LP     +L L    +         +  +L  L L +NK+    P        KLE L L
Sbjct: 29  LPPD-TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAF-APLVKLERLYL 86

Query: 151 KNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPY 210
             N    + +        L   +      R  + + +      ++ +  +     G    
Sbjct: 87  SKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLN--QMIVVELGTNPLKSSGIENG 144

Query: 211 SAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHL 270
           +   MK+LS + ++       ++        SL  L L  N       +    L  L  L
Sbjct: 145 AFQGMKKLSYIRIADT----NITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKL 200

Query: 271 YFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEG-- 328
               N+ S      L ++  L+ L ++NN L         +    ++++ +  N++    
Sbjct: 201 GLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKY--IQVVYLHNNNISAIG 258

Query: 329 ----NVPVQLNNLERLRILDISENRLS 351
                 P           + +  N + 
Sbjct: 259 SNDFCPPGYNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 70.5 bits (171), Expect = 8e-14
 Identities = 45/265 (16%), Positives = 83/265 (31%), Gaps = 16/265 (6%)

Query: 20  TRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTR 79
               +LD+ +N++         NL +L  L L +N    + P  + A   KLE L LS +
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISP-GAFAPLVKLERLYLS-K 88

Query: 80  NNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLL 139
           N    +  +      +L V       +  S  + L     +  L  +  K  G       
Sbjct: 89  NQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVV-ELGTNPLKSSGIENGA-F 146

Query: 140 RNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDI 199
           +   KL  + + + + +    +P+     L  L +  N        ++   L  L  + +
Sbjct: 147 QGMKKLSYIRIADTNIT---TIPQGLPPSLTELHLDGNKITKVDAASL-KGLNNLAKLGL 202

Query: 200 SKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEG---- 255
           S N        S      L  L L+ N          +     ++++ L NNN       
Sbjct: 203 SFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGG--LADHKYIQVVYLHNNNISAIGSN 260

Query: 256 --QFFSEYMNLTRLRHLYFENNNFS 278
                           +   +N   
Sbjct: 261 DFCPPGYNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 67.0 bits (162), Expect = 1e-12
 Identities = 48/275 (17%), Positives = 86/275 (31%), Gaps = 13/275 (4%)

Query: 154 SFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAG 213
           S  G+ ++PK        LD+  N     +       L+ L  + +  N      P +  
Sbjct: 18  SDLGLEKVPKDLPPDTALLDLQNNKITE-IKDGDFKNLKNLHTLILINNKISKISPGAFA 76

Query: 214 EMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFE 273
            + +L  L LS+N     L + +      L + +          F+  +N   +  L   
Sbjct: 77  PLVKLERLYLSKNQLKE-LPEKMPKTLQELRVHENEITKVRKSVFN-GLNQMIVVELGTN 134

Query: 274 NNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQ 333
               SG           L  + I++  ++             L  L +  N +       
Sbjct: 135 PLKSSGIENGAFQGMKKLSYIRIADTNIT----TIPQGLPPSLTELHLDGNKITKVDAAS 190

Query: 334 LNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLR 393
           L  L  L  L +S N +S     SL  +         N     +PG L     +  + L 
Sbjct: 191 LKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLH 250

Query: 394 DNTFSG------RIPHQINEHSNLRFLLLGGNHLQ 422
           +N  S         P    + ++   + L  N +Q
Sbjct: 251 NNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 65.8 bits (159), Expect = 4e-12
 Identities = 43/212 (20%), Positives = 68/212 (32%), Gaps = 4/212 (1%)

Query: 242 SLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNML 301
              LLDL NN        ++ NL  L  L   NN  S            L+ L +S N L
Sbjct: 32  DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 91

Query: 302 SGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLS 361
              +P  M     EL +       +  +V   LN +  + +             +   + 
Sbjct: 92  K-ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK 150

Query: 362 SVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHL 421
            + ++ +    +   IP  L  S  L  L+L  N  +      +   +NL  L L  N +
Sbjct: 151 KLSYIRIADTNITT-IPQGLPPS--LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSI 207

Query: 422 QGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCF 453
                  L     L  + L+ NK         
Sbjct: 208 SAVDNGSLANTPHLRELHLNNNKLVKVPGGLA 239

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 58.9 bits (141), Expect = 6e-10
 Identities = 44/248 (17%), Positives = 84/248 (33%), Gaps = 12/248 (4%)

Query: 377 IPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLA 436
           +P +L        L+L++N  +           NL  L+L  N +    P     L KL 
Sbjct: 25  VPKDLPPD--TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLE 82

Query: 437 MMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMF 496
            + LS+N+    +P      L      ++ +   + +         F  L          
Sbjct: 83  RLYLSKNQLK-ELPEKMPKTLQELRVHENEITKVRKSV--------FNGLNQMIVVELGT 133

Query: 497 GMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQ 556
              +            +++                    +T L L  N++T    + +  
Sbjct: 134 NPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKG 193

Query: 557 LQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYN 616
           L  +  L LS NS+S     S +N   +  L ++ NKL  ++P  L    ++ +  +  N
Sbjct: 194 LNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNN 252

Query: 617 NLSGRTPD 624
           N+S    +
Sbjct: 253 NISAIGSN 260

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 50.8 bits (120), Expect = 3e-07
 Identities = 41/257 (15%), Positives = 82/257 (31%), Gaps = 12/257 (4%)

Query: 384 SCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRN 443
            C L  +   D     ++P  +    +   L L  N +          L+ L  + L  N
Sbjct: 9   QCHLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINN 65

Query: 444 KFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLS 503
           K S   P  FA ++         L  SK    EL E++           N +  + + + 
Sbjct: 66  KISKISPGAFAPLVKLER-----LYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVF 120

Query: 504 ALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILAL 563
               +  + E         +  E      + +++ + ++   +T  IP  +    ++  L
Sbjct: 121 NGLNQMIVVELGTNPL-KSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL--PPSLTEL 176

Query: 564 NLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTP 623
           +L  N ++     S   L  +  L +S+N ++      L     L   +++ N L     
Sbjct: 177 HLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPG 236

Query: 624 DKGQFATFDESSYRGNP 640
                          N 
Sbjct: 237 GLADHKYIQVVYLHNNN 253

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 45.4 bits (106), Expect = 1e-05
 Identities = 25/121 (20%), Positives = 40/121 (33%)

Query: 536 VTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLT 595
              LDL  N++T     D   L+ +  L L NN +S   P +F+ L  +E L +S N+L 
Sbjct: 33  TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 92

Query: 596 GQIPPQLTALNFLSIFNVSYNNLSGRTPDKGQFATFDESSYRGNPSLCAWLIQQKYSRTL 655
                    L  L +       +     +        E       S        +  + L
Sbjct: 93  ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKL 152

Query: 656 K 656
            
Sbjct: 153 S 153

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 40.8 bits (94), Expect = 4e-04
 Identities = 24/157 (15%), Positives = 45/157 (28%), Gaps = 6/157 (3%)

Query: 1   MNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMF 60
           +               + + +L  + I+   +  ++P       SL  L L  N    + 
Sbjct: 131 LGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQ--GLPPSLTELHLDGNKITKVD 187

Query: 61  PLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHL 120
             +SL   + L  L LS  + +          T  L  L L    L    P  L    ++
Sbjct: 188 A-ASLKGLNNLAKLGLSFNSISAVDNGSLA-NTPHLRELHLNNNKLV-KVPGGLADHKYI 244

Query: 121 KYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSG 157
           + + L +N +               +       S   
Sbjct: 245 QVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFS 281

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.1 bits (154), Expect = 1e-11
 Identities = 42/257 (16%), Positives = 75/257 (29%), Gaps = 5/257 (1%)

Query: 143 PKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKN 202
              + + L  N  S +          L  L +  N            +            
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 203 CFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYM 262
                 P +   +  L  L L        L   +  G  +L+ L L +N  +      + 
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLD-RCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFR 150

Query: 263 NLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMS 322
           +L  L HL+   N  S   +       SL  L +  N ++   PH   +       L + 
Sbjct: 151 DLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRL-MTLYLF 209

Query: 323 KNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELF 382
            N+L       L  L  L+ L +++N       +    + ++      + +   +P  L 
Sbjct: 210 ANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQRL- 268

Query: 383 RSCKLVTLNLRDNTFSG 399
               L    L  N   G
Sbjct: 269 AGRDL--KRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.7 bits (153), Expect = 1e-11
 Identities = 48/262 (18%), Positives = 87/262 (33%), Gaps = 8/262 (3%)

Query: 91  LPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLL 150
           +P +    + L    ++           +L  L L  N L               ++ L 
Sbjct: 30  IPAA-SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLS 88

Query: 151 KNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPY 210
            N     +          LH L +       +L   +   L  L Y+ +  N  +     
Sbjct: 89  DNAQLRSVDPATFHGLGRLHTLHLD-RCGLQELGPGLFRGLAALQYLYLQDNALQALPDD 147

Query: 211 SAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHL 270
           +  ++  L+ L L  N  S  + +    G  SL+ L L  N         + +L RL  L
Sbjct: 148 TFRDLGNLTHLFLHGNRISS-VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTL 206

Query: 271 YFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNV 330
           Y   NN S    + L    +LQ L +++N              + L+    S + +  ++
Sbjct: 207 YLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR--ARPLWAWLQKFRGSSSEVPCSL 264

Query: 331 PVQLNNLERLRILDISENRLSG 352
           P +L       +  ++ N L G
Sbjct: 265 PQRLAG---RDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.4 bits (142), Expect = 3e-10
 Identities = 41/284 (14%), Positives = 80/284 (28%), Gaps = 32/284 (11%)

Query: 20  TRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTR 79
              + + +  N+++    +      +L  L L  N    +                    
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDA------------------ 73

Query: 80  NNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLL 139
                             +       L    P        L  L L    L    P    
Sbjct: 74  -------AAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGL-F 125

Query: 140 RNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDI 199
           R    L+ L L++N+   +          L HL +  N     +P      L  L  + +
Sbjct: 126 RGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS-VPERAFRGLHSLDRLLL 184

Query: 200 SKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFS 259
            +N      P++  ++  L  L L  N  S  L    +    +L+ L L++N +     +
Sbjct: 185 HQNRVAHVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPWVCDCRA 243

Query: 260 EYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSG 303
             +    L+     ++     +   L       +  ++ N L G
Sbjct: 244 RPL-WAWLQKFRGSSSEVPCSLPQRL---AGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.1 bits (141), Expect = 4e-10
 Identities = 38/198 (19%), Positives = 65/198 (32%), Gaps = 1/198 (0%)

Query: 265 TRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKN 324
              + ++   N  S        +  +L +L + +N+L+          +   ++      
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 325 HLEGNVPVQLNNLERLRILDISENRLSGPIASSLN-LSSVEHLSLQKNALNGLIPGELFR 383
            L    P   + L RL  L +    L          L+++++L LQ NAL  L       
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD 151

Query: 384 SCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRN 443
              L  L L  N  S           +L  LLL  N +    P     L +L  + L  N
Sbjct: 152 LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN 211

Query: 444 KFSGSIPPCFANVLSWRV 461
             S       A + + + 
Sbjct: 212 NLSALPTEALAPLRALQY 229

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.1 bits (141), Expect = 4e-10
 Identities = 43/249 (17%), Positives = 78/249 (31%), Gaps = 26/249 (10%)

Query: 242 SLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNML 301
           + + + L  N       + +     L  L+  +N  +            L+ LD+S+N  
Sbjct: 33  ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92

Query: 302 SGHIPHWMGNFSSELEILSMS------------------------KNHLEGNVPVQLNNL 337
              +     +    L  L +                          N L+        +L
Sbjct: 93  LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDL 152

Query: 338 ERLRILDISENRLSGPIASSL-NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNT 396
             L  L +  NR+S     +   L S++ L L +N +  + P       +L+TL L  N 
Sbjct: 153 GNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN 212

Query: 397 FSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANV 456
            S      +     L++L L  N               L     S ++   S+P   A  
Sbjct: 213 LSALPTEALAPLRALQYLRLNDNPWVCDC-RARPLWAWLQKFRGSSSEVPCSLPQRLAGR 271

Query: 457 LSWRVGSDD 465
              R+ ++D
Sbjct: 272 DLKRLAAND 280

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.7 bits (140), Expect = 5e-10
 Identities = 39/310 (12%), Positives = 82/310 (26%), Gaps = 58/310 (18%)

Query: 288 STSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISE 347
             + Q + +  N +S           +   +   S      +           ++     
Sbjct: 31  PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90

Query: 348 NRLSGPIASSLN-LSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQIN 406
            +L     ++ + L  +  L L +  L  L PG       L  L L+DN           
Sbjct: 91  AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFR 150

Query: 407 EHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDV 466
           +  NL  L L GN +          L  L  + L +N+ +   P  F ++          
Sbjct: 151 DLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMT----- 205

Query: 467 LNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYE 526
                                    +N +  +                            
Sbjct: 206 ---------------------LYLFANNLSALPTE------------------------- 219

Query: 527 IYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIES 586
               + +  +  L L+ N    +  +       +     S++ +  S+P+  +   +   
Sbjct: 220 --ALAPLRALQYLRLNDNPWVCDCRA-RPLWAWLQKFRGSSSEVPCSLPQRLAGRDL--- 273

Query: 587 LDISYNKLTG 596
             ++ N L G
Sbjct: 274 KRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.0 bits (120), Expect = 2e-07
 Identities = 51/336 (15%), Positives = 98/336 (29%), Gaps = 63/336 (18%)

Query: 287 SSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDIS 346
            +            L   +P       +  + + +  N +             L IL + 
Sbjct: 9   YNEPKVTTSCPQQGLQ-AVPV---GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLH 64

Query: 347 ENRLSGPIASSLNLSSVEHLSLQKNA--LNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQ 404
            N L+   A++    ++       +   L  + P       +L TL+L         P  
Sbjct: 65  SNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGL 124

Query: 405 INEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSD 464
               + L++L L  N LQ    D    L  L  + L  N+ S      F  + S      
Sbjct: 125 FRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHS------ 178

Query: 465 DVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNR 524
                           ++   L  NR ++     +R L                      
Sbjct: 179 ----------------LDRLLLHQNRVAHVHPHAFRDL---------------------- 200

Query: 525 YEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMI 584
                     R+  L L  N L+      +  L+A+  L L++N        +      +
Sbjct: 201 ---------GRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR-ARPLWAWL 250

Query: 585 ESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSG 620
           +    S +++   +P +L   +      ++ N+L G
Sbjct: 251 QKFRGSSSEVPCSLPQRLAGRDLK---RLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (100), Expect = 6e-05
 Identities = 29/157 (18%), Positives = 52/157 (33%), Gaps = 7/157 (4%)

Query: 1   MNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMF 60
           + L+ N + +      ++L  L  L +  N+++         L SL+ L L  N    + 
Sbjct: 134 LYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVH 193

Query: 61  PLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHL 120
           P +       +        NN   + TE   P   L  L L             L  + L
Sbjct: 194 PHAFRDLGRLMTL--YLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAW-L 250

Query: 121 KYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSG 157
           +    S +++  + P  L       ++  L  N   G
Sbjct: 251 QKFRGSSSEVPCSLPQRLAG----RDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (97), Expect = 1e-04
 Identities = 29/206 (14%), Positives = 58/206 (28%), Gaps = 5/206 (2%)

Query: 439 DLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGM 498
            L  N+ S      F    +  +        +++++           L  + ++      
Sbjct: 38  FLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVD 97

Query: 499 WRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQ 558
                 L +   +     ++              +  +  L L  N L          L 
Sbjct: 98  PATFHGLGRLHTLH----LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLG 153

Query: 559 AILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNL 618
            +  L L  N +S     +F  L  ++ L +  N++    P     L  L    +  NNL
Sbjct: 154 NLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNL 213

Query: 619 SGRTPDKGQFATFDES-SYRGNPSLC 643
           S    +        +      NP +C
Sbjct: 214 SALPTEALAPLRALQYLRLNDNPWVC 239

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.6 bits (142), Expect = 8e-10
 Identities = 51/452 (11%), Positives = 107/452 (23%), Gaps = 25/452 (5%)

Query: 1   MNLERNFIG-SPLITCLKNLTRLKILDISSNQLNG----SLPSVISNLTSLEYLDLSHNN 55
           ++++   +  +     L  L + +++ +    L       + S +    +L  L+L  N 
Sbjct: 7   LDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE 66

Query: 56  F--EGMFPLSSL--ANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYP 111
               G+  +         K++ L L     T             L     T   L+ S  
Sbjct: 67  LGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLP----TLQELHLSDN 122

Query: 112 DFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHH 171
                   L    L   +           +        L +   +          +   +
Sbjct: 123 LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN 182

Query: 172 LDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGG 231
                   +G       +   KL    ++ +         A +     L   S      G
Sbjct: 183 EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG 242

Query: 232 LSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSL 291
           +++           L        G       +L R+          S    +       L
Sbjct: 243 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARL 302

Query: 292 QVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLS 351
               +                 +       S    +    ++L                 
Sbjct: 303 LCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRL---EDAGVRE 359

Query: 352 GPIASSLNLSSVEHLSLQKNALNGL----IPGELFRSCKLVTLNLRDNTFSGRIPHQI-- 405
                    S +  L L    ++      +   L  +  L  L+L +N        Q+  
Sbjct: 360 LCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVE 419

Query: 406 ---NEHSNLRFLLLGGNHLQGPIPDQLCQLQK 434
                   L  L+L   +    + D+L  L+K
Sbjct: 420 SVRQPGCLLEQLVLYDIYWSEEMEDRLQALEK 451

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.6 bits (129), Expect = 2e-08
 Identities = 55/454 (12%), Positives = 115/454 (25%), Gaps = 25/454 (5%)

Query: 169 LHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEG----NIPYSAGEMKELSLLDLS 224
           +  LDI C          +  +LQ+   + +           +I  +      L+ L+L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 225 RNYFSG----GLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGK 280
            N         + Q + T    ++ L L N    G       +  R      E +     
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL 123

Query: 281 IKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERL 340
           + D  L      +LD    +    + +   + +S   + S+ +   +       NN    
Sbjct: 124 LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINE 183

Query: 341 RILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGR 400
             + +    L         L          N  +         S + + L        G 
Sbjct: 184 AGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGM 243

Query: 401 IPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWR 460
                        L        G        L ++     S  + S +            
Sbjct: 244 AELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLL 303

Query: 461 VGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFA 520
             +         +              +  S          L     R       E+   
Sbjct: 304 CETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQG 363

Query: 521 MKNRYEIYNGSNVNRVTGLDLSCNQLTGE----IPSDIGQLQAILALNLSNNSLSGSIPE 576
           +            + +  L L+   ++      + + +    ++  L+LSNN L  +   
Sbjct: 364 LGQ--------PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGIL 415

Query: 577 SFS-----NLKMIESLDISYNKLTGQIPPQLTAL 605
                      ++E L +     + ++  +L AL
Sbjct: 416 QLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.4 bits (118), Expect = 5e-07
 Identities = 56/450 (12%), Positives = 109/450 (24%), Gaps = 17/450 (3%)

Query: 22  LKILDISSNQLNGS-LPSVISNLTSLEYLDLSHNNF--EGMFPLSS-LANHSKLEGLLLS 77
           ++ LDI   +L+ +    ++  L   + + L            +SS L  +  L  L L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 78  TRNNTLHVKTENWLPTS-QLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPT 136
             +N L     + +    Q     + K +L                L         +   
Sbjct: 64  --SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD 121

Query: 137 WLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMY 196
            LL +     +     +    + +L                +     P    + +     
Sbjct: 122 NLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI 181

Query: 197 MDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQ 256
            +         +  S  +++ L L        +      +V    SL  L L +N     
Sbjct: 182 NEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 241

Query: 257 FFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSEL 316
             +E                               +V   +   L               
Sbjct: 242 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRV-LRAKESLKELSLAGNELGDEGA 300

Query: 317 EILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGL 376
            +L  +       +               S           L    + +  L+   +  L
Sbjct: 301 RLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVREL 360

Query: 377 IPGELFRSCKLVTLNLRDNTFSGR----IPHQINEHSNLRFLLLGGNHLQGPIPDQLCQL 432
             G       L  L L D   S      +   +  + +LR L L  N L      QL + 
Sbjct: 361 CQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVES 420

Query: 433 QK-----LAMMDLSRNKFSGSIPPCFANVL 457
            +     L  + L    +S  +      + 
Sbjct: 421 VRQPGCLLEQLVLYDIYWSEEMEDRLQALE 450

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.9 bits (109), Expect = 7e-06
 Identities = 13/87 (14%), Positives = 30/87 (34%), Gaps = 5/87 (5%)

Query: 539 LDLSCNQLTGEIPSDI-GQLQAILALNLSNNSLSG----SIPESFSNLKMIESLDISYNK 593
           LD+ C +L+    +++   LQ    + L +  L+      I  +      +  L++  N+
Sbjct: 7   LDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE 66

Query: 594 LTGQIPPQLTALNFLSIFNVSYNNLSG 620
           L       +          +   +L  
Sbjct: 67  LGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (92), Expect = 7e-04
 Identities = 14/102 (13%), Positives = 30/102 (29%), Gaps = 9/102 (8%)

Query: 217 ELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSE----YMNLTRLRHLYF 272
           ++  LD+     S      ++      +++ L +         +          L  L  
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 273 ENNNFSGKIKDGLLS-----STSLQVLDISNNMLSGHIPHWM 309
            +N         +L      S  +Q L + N  L+G     +
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVL 104

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.4 bits (137), Expect = 2e-09
 Identities = 45/298 (15%), Positives = 92/298 (30%), Gaps = 30/298 (10%)

Query: 319 LSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIP 378
           L ++  +L  +V  +L +   +       + +  P+A   +   V+H+ L  + +     
Sbjct: 5   LDLTGKNLHPDVTGRLLSQG-VIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTL 63

Query: 379 GELFRSCK-LVTLNLRDNTFSGRIPHQINEHSNLRFLLLG--GNHLQGPIPDQLCQLQKL 435
             +   C  L  L+L     S  I + + ++SNL  L L       +  +   L    +L
Sbjct: 64  HGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL 123

Query: 436 AMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTM 495
             ++LS            A        +   L+G + N  + D         N    +  
Sbjct: 124 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLS 183

Query: 496 FGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLS-CNQLTGEIPSDI 554
             +                                  +N +  L LS C  +  E   ++
Sbjct: 184 DSVMLKNDC----------------------FQEFFQLNYLQHLSLSRCYDIIPETLLEL 221

Query: 555 GQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFN 612
           G++  +  L +      G++      L     L I+ +  T    P +       I+ 
Sbjct: 222 GEIPTLKTLQVFGIVPDGTLQLLKEALP---HLQINCSHFTTIARPTIGNKKNQEIWG 276

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.1 bits (131), Expect = 8e-09
 Identities = 42/271 (15%), Positives = 97/271 (35%), Gaps = 13/271 (4%)

Query: 80  NNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLL 139
              LH      L +  +I     +  ++    +     + ++++DLS++ +  +    +L
Sbjct: 9   GKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFS-PFRVQHMDLSNSVIEVSTLHGIL 67

Query: 140 RNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDI-SCNNFRGKLPHNMGVILQKLMYMD 198
               KL+ L L+    S  +    AK+  L  L++  C+ F       +     +L  ++
Sbjct: 68  SQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELN 127

Query: 199 I------SKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNN 252
           +      ++   +  + + +  + +L+L    +N     LS  V      + L    +  
Sbjct: 128 LSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVM 187

Query: 253 FEGQFFSEYMNLTRLRHLYFEN-NNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGN 311
            +   F E+  L  L+HL      +   +    L    +L+ L +   +  G +      
Sbjct: 188 LKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQL---- 243

Query: 312 FSSELEILSMSKNHLEGNVPVQLNNLERLRI 342
               L  L ++ +H        + N +   I
Sbjct: 244 LKEALPHLQINCSHFTTIARPTIGNKKNQEI 274

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.5 bits (106), Expect = 1e-05
 Identities = 39/286 (13%), Positives = 85/286 (29%), Gaps = 28/286 (9%)

Query: 341 RILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGR 400
           + LD++   L   +   L    V      ++ ++  +  E F   ++  ++L ++     
Sbjct: 3   QTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLA-EHFSPFRVQHMDLSNSVIEVS 61

Query: 401 IPHQINEH-SNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSW 459
             H I    S L+ L L G  L  PI + L +   L  ++LS                  
Sbjct: 62  TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS 121

Query: 460 RVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEF 519
           R+                          +     T   +   ++ + +            
Sbjct: 122 RL---------------------DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRK 160

Query: 520 AMKNRYEIYNGSNVNRVTGLDLS-CNQLTGEIPSDIGQLQAILALNLSN-NSLSGSIPES 577
            ++             +  LDLS    L  +   +  QL  +  L+LS    +       
Sbjct: 161 NLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLE 220

Query: 578 FSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTP 623
              +  +++L +      G +     AL  L    ++ ++ +    
Sbjct: 221 LGEIPTLKTLQVFGIVPDGTLQLLKEALPHL---QINCSHFTTIAR 263

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.9 bits (102), Expect = 3e-05
 Identities = 18/99 (18%), Positives = 37/99 (37%), Gaps = 2/99 (2%)

Query: 246 LDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHI 305
           LDL+  N         ++   +       +     +     S   +Q +D+SN+++    
Sbjct: 5   LDLTGKNLHPDVTGRLLSQG-VIAFRCPRSFMDQPL-AEHFSPFRVQHMDLSNSVIEVST 62

Query: 306 PHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILD 344
            H + +  S+L+ LS+    L   +   L     L  L+
Sbjct: 63  LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 101

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.6 bits (96), Expect = 2e-04
 Identities = 34/254 (13%), Positives = 66/254 (25%), Gaps = 33/254 (12%)

Query: 22  LKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNN 81
           +       + ++  L    S    ++++DLS++  E       L+  SKL+         
Sbjct: 25  VIAFRCPRSFMDQPLAEHFSPF-RVQHMDLSNSVIEVSTLHGILSQCSKLQ--------- 74

Query: 82  TLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPT----- 136
                            L L    L+    + L    +L  L+LS       F       
Sbjct: 75  ----------------NLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLS 118

Query: 137 --WLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKL 194
               L                   +         L+      N  +  L   +      +
Sbjct: 119 SCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLV 178

Query: 195 MYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFE 254
                     + +      ++  L  L LSR Y     +   +    +L+ L +     +
Sbjct: 179 HLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPD 238

Query: 255 GQFFSEYMNLTRLR 268
           G        L  L+
Sbjct: 239 GTLQLLKEALPHLQ 252

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 49.7 bits (118), Expect = 5e-08
 Identities = 25/130 (19%), Positives = 46/130 (35%), Gaps = 10/130 (7%)

Query: 23  KILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNT 82
           ++L ++   L  ++   +  L  + +LDLSHN    + P       + L  L +   ++ 
Sbjct: 1   RVLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPP-----ALAALRCLEVLQASDN 53

Query: 83  LHVKTENWLPTSQLIVLGLTKCNLNG-SYPDFLLHQYHLKYLDLSHNKLVG--NFPTWLL 139
                +      +L  L L    L   +    L+    L  L+L  N L         L 
Sbjct: 54  ALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLA 113

Query: 140 RNNPKLEVLL 149
              P +  +L
Sbjct: 114 EMLPSVSSIL 123

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.3 bits (91), Expect = 3e-04
 Identities = 27/108 (25%), Positives = 37/108 (34%), Gaps = 5/108 (4%)

Query: 341 RILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGR 400
           R+L ++   L+  +     L  V HL L  N L  L P  L     L  L   DN     
Sbjct: 1   RVLHLAHKDLTV-LCHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNALENV 58

Query: 401 IPHQINEHSNLRFLLLGGNHLQG-PIPDQLCQLQKLAMMDLSRNKFSG 447
                      + LLL  N LQ       L    +L +++L  N    
Sbjct: 59  DGVANLPRL--QELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.5 bits (89), Expect = 5e-04
 Identities = 25/109 (22%), Positives = 39/109 (35%), Gaps = 6/109 (5%)

Query: 147 VLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEG 206
           VL L +   + +  L +     + HLD+S N  R   P      L+ L  +  S N  E 
Sbjct: 2   VLHLAHKDLTVLCHLEQLLL--VTHLDLSHNRLRALPPALAA--LRCLEVLQASDNALEN 57

Query: 207 NIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEG 255
               +     +   L L  N      +   +  C  L LL+L  N+   
Sbjct: 58  VDGVANLPRLQE--LLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.0 bits (85), Expect = 0.002
 Identities = 22/104 (21%), Positives = 38/104 (36%), Gaps = 24/104 (23%)

Query: 539 LDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIP---------------------ES 577
           L L+   LT  +   + QL  +  L+LS+N L    P                     + 
Sbjct: 3   LHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG 60

Query: 578 FSNLKMIESLDISYNKLTG-QIPPQLTALNFLSIFNVSYNNLSG 620
            +NL  ++ L +  N+L        L +   L + N+  N+L  
Sbjct: 61  VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.2 bits (83), Expect = 0.003
 Identities = 26/107 (24%), Positives = 37/107 (34%), Gaps = 5/107 (4%)

Query: 318 ILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLI 377
           +L ++   L   V   L  L  +  LD+S NRL     +   L  +E L    NAL  + 
Sbjct: 2   VLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD 59

Query: 378 PGELFRSCKLVTLNLRDNTF-SGRIPHQINEHSNLRFLLLGGNHLQG 423
                   +   L L +N          +     L  L L GN L  
Sbjct: 60  GVANLPRLQ--ELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 52.5 bits (124), Expect = 9e-08
 Identities = 50/331 (15%), Positives = 97/331 (29%), Gaps = 22/331 (6%)

Query: 289 TSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRI------ 342
                L+++N  LS  +P    +    LE L  S N L   +P    +L+ L +      
Sbjct: 38  RQAHELELNNLGLS-SLPELPPH----LESLVASCNSLT-ELPELPQSLKSLLVDNNNLK 91

Query: 343 -LDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRI 401
            L      L     S+  L  +  L          +     +    +  +L         
Sbjct: 92  ALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQ 151

Query: 402 PHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRV 461
             ++ E  NL FL                 L   +++  +              + +   
Sbjct: 152 LEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYA 211

Query: 462 GSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAM 521
            ++ +     L        +    L +                +    +           
Sbjct: 212 DNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNA 271

Query: 522 KNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNL 581
            +            +  L++S N+L  E+P+   +L+    L  S N L+  +PE   NL
Sbjct: 272 SSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLE---RLIASFNHLA-EVPELPQNL 326

Query: 582 KMIESLDISYNKLTGQIPPQLTALNFLSIFN 612
           K    L + YN L  + P    ++  L + +
Sbjct: 327 K---QLHVEYNPLR-EFPDIPESVEDLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 51.7 bits (122), Expect = 1e-07
 Identities = 56/333 (16%), Positives = 106/333 (31%), Gaps = 21/333 (6%)

Query: 15  CLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSS-----LANHS 69
           CL    +   L++++  L+ SLP +  +L   E L  S N+   +  L       L +++
Sbjct: 35  CLDR--QAHELELNNLGLS-SLPELPPHL---ESLVASCNSLTELPELPQSLKSLLVDNN 88

Query: 70  KLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNK 129
            L+ L            + N L     +        ++               L+     
Sbjct: 89  NLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAG 148

Query: 130 LVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGV 189
                    L+N P L  +   NNS   +  LP +    +   +I       +    +  
Sbjct: 149 NNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTT 208

Query: 190 ILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLS 249
           I      +    +        +  +     L +L ++     +S+++ +G   L      
Sbjct: 209 IYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYY 268

Query: 250 NNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWM 309
            N    +  S       L  L   NN    ++         L+ L  S N L+  +P   
Sbjct: 269 LNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALP---PRLERLIASFNHLA-EVPELP 323

Query: 310 GNFSSELEILSMSKNHLEGNVPVQLNNLERLRI 342
            N    L+ L +  N L    P    ++E LR+
Sbjct: 324 QN----LKQLHVEYNPLRE-FPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 42.5 bits (98), Expect = 1e-04
 Identities = 49/311 (15%), Positives = 89/311 (28%), Gaps = 18/311 (5%)

Query: 316 LEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNG 375
              L ++   L  ++P    +LE L     S N L+       +L S+   +    AL+ 
Sbjct: 40  AHELELNNLGLS-SLPELPPHLESL---VASCNSLTELPELPQSLKSLLVDNNNLKALSD 95

Query: 376 LIPGELFRSCKLVTLNLRDNTF------SGRIPHQINEHSNLRFLLLGGNHLQGPIPDQL 429
           L P   +       L                + +   +        L          ++L
Sbjct: 96  LPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEEL 155

Query: 430 CQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNN 489
            +LQ L  +       +         +    + + + +         L       +  N 
Sbjct: 156 PELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNL 215

Query: 490 RSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGE 549
             +            +      D     +            S ++ +       N  + E
Sbjct: 216 LKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNE 275

Query: 550 IPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLS 609
           I S      ++  LN+SNN L   +P     L   E L  S+N L  ++P     L  L 
Sbjct: 276 IRSLCDLPPSLEELNVSNNKLI-ELPALPPRL---ERLIASFNHLA-EVPELPQNLKQL- 329

Query: 610 IFNVSYNNLSG 620
             +V YN L  
Sbjct: 330 --HVEYNPLRE 338

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 37.9 bits (86), Expect = 0.004
 Identities = 53/326 (16%), Positives = 104/326 (31%), Gaps = 24/326 (7%)

Query: 119 HLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKA-KHDFLHHLDISCN 177
               L+L++  L     + L    P LE L+   NS + + +LP++ K   + + ++   
Sbjct: 39  QAHELELNNLGL-----SSLPELPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKAL 93

Query: 178 NFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVV 237
           +    L   +GV   +L  +   +N     I        +  L DL  +        + +
Sbjct: 94  SDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLK-KLPDLPPSLEFIAAGNNQL 152

Query: 238 TGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDIS 297
                L+ L      +      + +    L        N   +    L +   L  +   
Sbjct: 153 EELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYAD 212

Query: 298 NNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASS 357
           NN+L           +  +    ++           L+  E +             + +S
Sbjct: 213 NNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNAS 272

Query: 358 LN--------LSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHS 409
            N          S+E L++  N L   +P       +L  L    N  +  +P       
Sbjct: 273 SNEIRSLCDLPPSLEELNVSNNKLIE-LPALP---PRLERLIASFNHLA-EVPELP---Q 324

Query: 410 NLRFLLLGGNHLQGPIPDQLCQLQKL 435
           NL+ L +  N L+   PD    ++ L
Sbjct: 325 NLKQLHVEYNPLRE-FPDIPESVEDL 349

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.3 bits (121), Expect = 1e-07
 Identities = 32/181 (17%), Positives = 47/181 (25%), Gaps = 7/181 (3%)

Query: 119 HLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNN 178
               L LS N L   F    L    +L  L L     +            L  L     +
Sbjct: 32  DTTILHLSENLLYT-FSLATLMPYTRLTQLNLDRAELT-----KLQVDGTLPVLGTLDLS 85

Query: 179 FRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVT 238
                   +       + +         ++P  A            +      L   ++T
Sbjct: 86  HNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLT 145

Query: 239 GCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISN 298
               LE L L+NNN           L  L  L  + N+    I  G   S  L    +  
Sbjct: 146 PTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHG 204

Query: 299 N 299
           N
Sbjct: 205 N 205

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.5 bits (119), Expect = 2e-07
 Identities = 37/243 (15%), Positives = 61/243 (25%), Gaps = 37/243 (15%)

Query: 11  PLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSK 70
           P+      +     ++     L  +LP  +        L LS N     F L++L  +++
Sbjct: 2   PICEV-SKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYT-FSLATLMPYTR 56

Query: 71  LEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKL 130
           L  L                              NL+ +    L     L  L       
Sbjct: 57  LTQL------------------------------NLDRAELTKLQVDGTLPVLGTLDLSH 86

Query: 131 VGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVI 190
                  LL        +L  + +    L L   +            N    LP  +   
Sbjct: 87  NQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP 146

Query: 191 LQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSN 250
             KL  + ++ N            ++ L  L L  N            G   L    L  
Sbjct: 147 TPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKG--FFGSHLLPFAFLHG 204

Query: 251 NNF 253
           N +
Sbjct: 205 NPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.5 bits (119), Expect = 3e-07
 Identities = 33/212 (15%), Positives = 63/212 (29%), Gaps = 12/212 (5%)

Query: 383 RSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSR 442
           +    + +N      +  +P  +    +   L L  N L       L    +L  ++L R
Sbjct: 8   KVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64

Query: 443 NKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWL 502
            + +         VL     S + L    L    L          N  +S  +  +    
Sbjct: 65  AELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLG 124

Query: 503 SALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILA 562
              E     +E   +   +          ++        + N LT      +  L+ +  
Sbjct: 125 ELQELYLKGNELKTLPPGLLTPTPKLEKLSL--------ANNNLTELPAGLLNGLENLDT 176

Query: 563 LNLSNNSLSGSIPESFSNLKMIESLDISYNKL 594
           L L  NSL  +IP+ F    ++    +  N  
Sbjct: 177 LLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.4 bits (111), Expect = 2e-06
 Identities = 42/182 (23%), Positives = 57/182 (31%), Gaps = 6/182 (3%)

Query: 242 SLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNML 301
              +L LS N       +  M  TRL  L  +    +    DG L       L  +    
Sbjct: 32  DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQS 91

Query: 302 SGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLS 361
              +   +   +       +S N L       L  L  L+ L +  N L       L  +
Sbjct: 92  LPLLGQTLPALTVL----DVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPT 147

Query: 362 SVEHL-SLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNH 420
                 SL  N L  L  G L     L TL L++N+    IP        L F  L GN 
Sbjct: 148 PKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNP 206

Query: 421 LQ 422
             
Sbjct: 207 WL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.6 bits (109), Expect = 5e-06
 Identities = 40/181 (22%), Positives = 60/181 (33%), Gaps = 4/181 (2%)

Query: 265 TRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKN 324
                L+   N         L+  T L  L++            +      L  L +S N
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE---LTKLQVDGTLPVLGTLDLSHN 87

Query: 325 HLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRS 384
            L+    +         +        S P+ +   L  ++ L L+ N L  L PG L  +
Sbjct: 88  QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPT 147

Query: 385 CKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNK 444
            KL  L+L +N  +      +N   NL  LLL  N L   IP        L    L  N 
Sbjct: 148 PKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNP 206

Query: 445 F 445
           +
Sbjct: 207 W 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.9 bits (102), Expect = 3e-05
 Identities = 41/193 (21%), Positives = 66/193 (34%), Gaps = 7/193 (3%)

Query: 263 NLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMS 322
            +     +  +  N +  +   L       +L +S N+L       +  ++  L  L++ 
Sbjct: 8   KVASHLEVNCDKRNLT-ALPPDL--PKDTTILHLSENLLYTFSLATLMPYTR-LTQLNLD 63

Query: 323 KNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELF 382
               E         L  L  LD+S N+L         L ++  L +  N L  L  G L 
Sbjct: 64  --RAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALR 121

Query: 383 RSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSR 442
              +L  L L+ N      P  +     L  L L  N+L       L  L+ L  + L  
Sbjct: 122 GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQE 181

Query: 443 NKFSGSIPPCFAN 455
           N    +IP  F  
Sbjct: 182 NSLY-TIPKGFFG 193

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.1 bits (92), Expect = 5e-04
 Identities = 12/63 (19%), Positives = 23/63 (36%), Gaps = 3/63 (4%)

Query: 531 SNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDIS 590
           S V     ++     LT  +P D+ +      L+LS N L      +      +  L++ 
Sbjct: 7   SKVASHLEVNCDKRNLT-ALPPDLPKD--TTILHLSENLLYTFSLATLMPYTRLTQLNLD 63

Query: 591 YNK 593
             +
Sbjct: 64  RAE 66

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 48.0 bits (112), Expect = 2e-06
 Identities = 49/334 (14%), Positives = 87/334 (26%), Gaps = 20/334 (5%)

Query: 22  LKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNF--EGMFPLSS-LANHSKLEGLLLST 78
           LK+  I++     S+ +V+    S++ + LS N    E    LS  +A+   LE    S 
Sbjct: 10  LKLDAITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFS- 67

Query: 79  RNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWL 138
              T  VK E       L+   L    L+             +   +             
Sbjct: 68  DIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLY 127

Query: 139 LRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHH--LDISCNNFRGKLPHNMGVILQKLMY 196
           L NN        K       L + K   +      +    N              Q    
Sbjct: 128 LHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRL 187

Query: 197 MDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQ 256
           +   K    G  P     +    L              +      S   + L +     +
Sbjct: 188 LHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRE 247

Query: 257 FFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSG----HIPHWMGNF 312
                  L+        +           L +  LQ L +  N +       +   +   
Sbjct: 248 LGLNDCLLSARGAAAVVDAF-------SKLENIGLQTLRLQYNEIELDAVRTLKTVIDEK 300

Query: 313 SSELEILSMSKNHL--EGNVPVQLNNLERLRILD 344
             +L  L ++ N    E +V  ++  +   R   
Sbjct: 301 MPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRG 334

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 46.8 bits (109), Expect = 5e-06
 Identities = 40/295 (13%), Positives = 78/295 (26%), Gaps = 26/295 (8%)

Query: 10  SPLITCLKNLTRLKILDISSNQLNG----SLPSVISNLTSLEYLDLSHNNFEGMFPLSSL 65
             +   L     +K + +S N +       L   I++   LE  + S      +      
Sbjct: 21  KSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPE 80

Query: 66  ANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDL 125
           A    L+ LL   + +T+ +    + PT+Q  ++     +    +     +    +    
Sbjct: 81  ALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAK 140

Query: 126 SHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGI------------LQLPKAKHDFLHHLD 173
               L         +N P L  ++   N                   L   K        
Sbjct: 141 IARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRP 200

Query: 174 ISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLS 233
               +   +       +    +  +   +     +  +      L  L L+    S   +
Sbjct: 201 EGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGA 260

Query: 234 QSVVTGCF-----SLELLDLSNNNFEGQFFSE-----YMNLTRLRHLYFENNNFS 278
            +VV          L+ L L  N  E              +  L  L    N FS
Sbjct: 261 AAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 315

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 39.5 bits (90), Expect = 0.001
 Identities = 29/293 (9%), Positives = 56/293 (19%), Gaps = 28/293 (9%)

Query: 109 SYPDFLLHQYHLKYLDLSHNKLVGNFPTWL---LRNNPKLEVLLLKNNSFSGILQLPKAK 165
           S    LL    +K + LS N +      WL   + +   LE+    +     +       
Sbjct: 22  SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEA 81

Query: 166 HDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSR 225
              L    + C         +          +    +                       
Sbjct: 82  LRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKI 141

Query: 226 NYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGL 285
                 L+ +            +   N       +    T   H                
Sbjct: 142 ARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPE 201

Query: 286 LSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNN--------- 336
                L         L                 L+++         + LN+         
Sbjct: 202 GIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA 261

Query: 337 ----------LERLRILDISENRLSGPIASSL------NLSSVEHLSLQKNAL 373
                        L+ L +  N +      +L       +  +  L L  N  
Sbjct: 262 AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 314

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.3 bits (106), Expect = 4e-06
 Identities = 20/148 (13%), Positives = 48/148 (32%), Gaps = 4/148 (2%)

Query: 1   MNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMF 60
           + L    I         N  R + LD+   ++   + ++ + L   + +D S N    + 
Sbjct: 1   VKLTAELIEQ--AAQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKLD 57

Query: 61  PLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHL 120
               L    K   +  +          +     ++LI+   +   L    P   L     
Sbjct: 58  GFPLLRR-LKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTY 116

Query: 121 KYLDLSHNKLVGNFPTWLLRNNPKLEVL 148
             +  +      ++  +++   P++ VL
Sbjct: 117 LCILRNPVTNKKHYRLYVIYKVPQVRVL 144

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (90), Expect = 6e-04
 Identities = 28/147 (19%), Positives = 44/147 (29%), Gaps = 3/147 (2%)

Query: 333 QLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNL 392
           Q  N  R R LD+   ++         L   + +    N +  L    L R   L TL +
Sbjct: 13  QYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRR--LKTLLV 70

Query: 393 RDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPC 452
            +N              +L  L+L  N L            K             +    
Sbjct: 71  NNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHY 130

Query: 453 FANVLSWRVGSDDVLNGSKLNSPELDE 479
              V+ ++V    VL+  K+   E  E
Sbjct: 131 RLYVI-YKVPQVRVLDFQKVKLKERQE 156

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 44.2 bits (103), Expect = 2e-05
 Identities = 28/171 (16%), Positives = 54/171 (31%), Gaps = 15/171 (8%)

Query: 16  LKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLL 75
              L  +  +  +++ +       I  L ++  L L+ N    + PL++L N   L    
Sbjct: 42  QNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDE 99

Query: 76  LSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFP 135
              ++ +     +     S           L        L+  + K  D++    +    
Sbjct: 100 NKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLD 159

Query: 136 TWL-----------LRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDIS 175
           T             L    KL+ L L  N  S +  L   K+  L  L++ 
Sbjct: 160 TLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKN--LDVLELF 208

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.1 bits (87), Expect = 0.002
 Identities = 32/205 (15%), Positives = 68/205 (33%), Gaps = 19/205 (9%)

Query: 94  SQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNN 153
           ++ I   L K ++  +     L+   +  +  +++ +        ++  P +  L L  N
Sbjct: 24  AETIKDNLKKKSVTDAVTQNELNS--IDQIIANNSDIKSVQG---IQYLPNVTKLFLNGN 78

Query: 154 SFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAG 213
             + I  L  A    L  L +  N  +          L+ L       +   G +     
Sbjct: 79  KLTDIKPL--ANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQL 136

Query: 214 EMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFE 273
           E   L    ++       L++         ++ D+               LT+L++LY  
Sbjct: 137 ESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIV----------PLAGLTKLQNLYLS 186

Query: 274 NNNFSGKIKDGLLSSTSLQVLDISN 298
            N+ S      L    +L VL++ +
Sbjct: 187 KNHISDL--RALAGLKNLDVLELFS 209

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 43.9 bits (102), Expect = 2e-05
 Identities = 34/174 (19%), Positives = 61/174 (35%), Gaps = 13/174 (7%)

Query: 13  ITCLKNLTRLKILDISSNQLNGSLPSV------ISNLTSLEYLDLSHNNFEGMFPLSSLA 66
           I   +    +   +    +L+G +P +      +S L + ++L LS NN E +  LS + 
Sbjct: 11  IRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGME 70

Query: 67  NHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLS 126
           N       L         +K    L      +  L       +    +    +L+ L +S
Sbjct: 71  N-------LRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMS 123

Query: 127 HNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFR 180
           +NK+        L    KLE LLL  N      +   A  ++   +     N +
Sbjct: 124 NNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLK 177

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (98), Expect = 4e-05
 Identities = 21/108 (19%), Positives = 37/108 (34%), Gaps = 2/108 (1%)

Query: 537 TGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIP-ESFSNLKMIESLDISYNKLT 595
           +GL  + +    +    +   + +  L + N      +       L  + +L I  + L 
Sbjct: 11  SGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR 69

Query: 596 GQIPPQLTALNFLSIFNVSYNNLSGRTPDKGQFATFDESSYRGNPSLC 643
              P        LS  N+S+N L   +    Q  +  E    GNP  C
Sbjct: 70  FVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHC 117

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.5 bits (101), Expect = 4e-05
 Identities = 33/234 (14%), Positives = 66/234 (28%), Gaps = 23/234 (9%)

Query: 17  KNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLL 76
             L     +    + +  ++    ++L  +  L         +  +  L N   LE    
Sbjct: 16  PALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTIEGVQYLNNLIGLE---- 69

Query: 77  STRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPT 136
             ++N +         T            L+G+    +     L+ +             
Sbjct: 70  -LKDNQITDLAPLKNLTKITE------LELSGNPLKNVSAIAGLQSIKTLDLTSTQITDV 122

Query: 137 WLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMY 196
             L     L+VL L  N  + I  L    +     +  +  +    L +       KL  
Sbjct: 123 TPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLS-----KLTT 177

Query: 197 MDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSN 250
           +    N      P     +  L  + L  N  S     S +    +L ++ L+N
Sbjct: 178 LKADDNKISDISPL--ASLPNLIEVHLKNNQISD---VSPLANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.0 bits (92), Expect = 5e-04
 Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 5/63 (7%)

Query: 15  CLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGL 74
            L NL++L  L    N+++   P  +++L +L  + L +N    + PL++    S L  +
Sbjct: 168 PLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSPLANT---SNLFIV 222

Query: 75  LLS 77
            L+
Sbjct: 223 TLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.5 bits (88), Expect = 0.001
 Identities = 31/199 (15%), Positives = 54/199 (27%), Gaps = 18/199 (9%)

Query: 13  ITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLE 72
                +L  +  L      +       +  L +L  L+L  N    + PL +L   ++LE
Sbjct: 34  TVTQADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLAPLKNLTKITELE 91

Query: 73  GLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQ-----------YHLK 121
                 +N +     ++                L G     +L+              L 
Sbjct: 92  LSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLT 151

Query: 122 YLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRG 181
            L               L N  KL  L   +N  S I  L    +  L  + +  N    
Sbjct: 152 NLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPLASLPN--LIEVHLKNNQISD 209

Query: 182 KLPHNMGVILQKLMYMDIS 200
             P         L  + ++
Sbjct: 210 VSPLAN---TSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.1 bits (87), Expect = 0.002
 Identities = 10/41 (24%), Positives = 24/41 (58%), Gaps = 2/41 (4%)

Query: 13  ITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSH 53
           I+ L +L  L  + + +NQ++   P  ++N ++L  + L++
Sbjct: 188 ISPLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN 226

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (100), Expect = 4e-05
 Identities = 30/236 (12%), Positives = 58/236 (24%), Gaps = 6/236 (2%)

Query: 384 SCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRN 443
            C       +++  +  IP  +    N   L      L+            L  +++S+N
Sbjct: 7   HCSNRVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQN 63

Query: 444 KFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLS 503
                I     + L            + L       +          S+  +  +     
Sbjct: 64  DVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDV-H 122

Query: 504 ALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILAL 563
            +     +   ++    +                 L L+ N +           Q     
Sbjct: 123 KIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELN 182

Query: 564 NLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLS 619
              NN+L     + F        LDIS  ++       L  L  L   +    NL 
Sbjct: 183 LSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (99), Expect = 5e-05
 Identities = 36/205 (17%), Positives = 68/205 (33%)

Query: 20  TRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTR 79
                L     +L        S    LE +++S N+   +      +N  KL  + +   
Sbjct: 29  RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 88

Query: 80  NNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLL 139
           NN L++  E +     L  L ++   +        +H      LD+  N  +        
Sbjct: 89  NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSF 148

Query: 140 RNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDI 199
                  V+L  N +    +         L  L++S NN   +LP+++       + +DI
Sbjct: 149 VGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDI 208

Query: 200 SKNCFEGNIPYSAGEMKELSLLDLS 224
           S+        Y    +K+L      
Sbjct: 209 SRTRIHSLPSYGLENLKKLRARSTY 233

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (92), Expect = 5e-04
 Identities = 19/224 (8%), Positives = 52/224 (23%), Gaps = 6/224 (2%)

Query: 377 IPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLA 436
           IP +L R+   + L               +   +L  + +  N +   I   +       
Sbjct: 23  IPSDLPRN--AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKL 80

Query: 437 MMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMF 496
                    +       A   +       +++ + +       +I           + + 
Sbjct: 81  HEIRIEKANNLLYINPEAFQ-NLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNIN 139

Query: 497 GMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQ 556
                 ++    +     + +             +            N L          
Sbjct: 140 IHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHG 199

Query: 557 LQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPP 600
               + L++S   +         NLK + +      K   ++P 
Sbjct: 200 ASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK---KLPT 240

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (87), Expect = 0.002
 Identities = 9/54 (16%), Positives = 17/54 (31%)

Query: 1   MNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHN 54
              + N +           +   ILDIS  +++      + NL  L      + 
Sbjct: 182 NLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNL 235

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 42.5 bits (98), Expect = 5e-05
 Identities = 32/159 (20%), Positives = 60/159 (37%), Gaps = 5/159 (3%)

Query: 288 STSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISE 347
                 L +++N L       +      L  L + +N L G  P        ++ L + E
Sbjct: 28  PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87

Query: 348 NRLSGPIASSL-NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQIN 406
           N++          L  ++ L+L  N ++ ++PG       L +LNL  N F+        
Sbjct: 88  NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWF 147

Query: 407 EHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKF 445
               LR   L G   +   P    +++ + + DL  ++F
Sbjct: 148 -AEWLRKKSLNGGAARCGAPS---KVRDVQIKDLPHSEF 182

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	735
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.97
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.96
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.95
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.95
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.93
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.93
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.91
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.91
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.9
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.89
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.81
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.81
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.78
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.77
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.73
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.73
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.72
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.72
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.71
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.69
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.67
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.66
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.66
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.65
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.64
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.64
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.47
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.45
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.45
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.44
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.43
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.43
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.41
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.31
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.14
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.12
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.11
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.07
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.82
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.48
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.09
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.63

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.97  E-value=6.9e-32  Score=276.93  Aligned_cols=254  Identities=35%  Similarity=0.564  Sum_probs=211.1

Q ss_pred             CcEEEcCCCcCCC--CCCccCCCCCCCCEEEccc-CCCCccCCCcc-CCCCccEEEccCCcccccCcccccCCCCCcEEe
Q 004704          316 LEILSMSKNHLEG--NVPVQLNNLERLRILDISE-NRLSGPIASSL-NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLN  391 (735)
Q Consensus       316 L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~L~~-n~l~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~  391 (735)
                      ++.|++++|.+.+  .+|..+.++++|++|++++ |+++|.+|..+ ++++|++|++++|++.+..+..+..+.+|+.++
T Consensus        52 v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~  131 (313)
T d1ogqa_          52 VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLD  131 (313)
T ss_dssp             EEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEE
T ss_pred             EEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccc
Confidence            5556666665554  3556666666666666664 56666555544 667777777777777777777788888888999


Q ss_pred             CCCCcccccCChhhhCCCCccEEEccCCcCCCCCchhhhcCCCC-CEEECcCCcCCCCCCchhhcccccccccCCccCCC
Q 004704          392 LRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKL-AMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGS  470 (735)
Q Consensus       392 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L-~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~  470 (735)
                      +++|.+.+.+|..+..++.++.+++++|.+.+.+|+.+..+..+ +.+++++|++++..|..+..+              
T Consensus       132 l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l--------------  197 (313)
T d1ogqa_         132 FSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL--------------  197 (313)
T ss_dssp             CCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC--------------
T ss_pred             cccccccccCchhhccCcccceeecccccccccccccccccccccccccccccccccccccccccc--------------
Confidence            99888888888889999999999999999988888888888776 889999999988877766543              


Q ss_pred             CCCCcccchhhhcccCCCCCCCccccchhhhhhhhhhhhccccceeEEEEeccccccccCCcccccceEECCCCcccCCC
Q 004704          471 KLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEI  550 (735)
Q Consensus       471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~  550 (735)
                                                                                      ....++++++...+.+
T Consensus       198 ----------------------------------------------------------------~~~~l~l~~~~~~~~~  213 (313)
T d1ogqa_         198 ----------------------------------------------------------------NLAFVDLSRNMLEGDA  213 (313)
T ss_dssp             ----------------------------------------------------------------CCSEEECCSSEEEECC
T ss_pred             ----------------------------------------------------------------cccccccccccccccc
Confidence                                                                            2335899999999999


Q ss_pred             CccccccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccCCccccCCCCCCeEEcccCcCcccCCCCCCCCc
Q 004704          551 PSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPDKGQFAT  630 (735)
Q Consensus       551 p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~  630 (735)
                      |..++.+++++.+++++|.+++.+| .++.+++|+.|||++|+++|.+|..+.++++|++|||++|+|+|.+|+.+.+..
T Consensus       214 ~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~~~L~~  292 (313)
T d1ogqa_         214 SVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQR  292 (313)
T ss_dssp             GGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGG
T ss_pred             ccccccccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCcccCCC
Confidence            9999999999999999999997665 589999999999999999999999999999999999999999999999988999


Q ss_pred             cCCcccCCCCCCCCcccc
Q 004704          631 FDESSYRGNPSLCAWLIQ  648 (735)
Q Consensus       631 ~~~~~~~gN~~lc~~~~~  648 (735)
                      ++..++.||+.+||.|+.
T Consensus       293 L~~l~l~~N~~l~g~plp  310 (313)
T d1ogqa_         293 FDVSAYANNKCLCGSPLP  310 (313)
T ss_dssp             SCGGGTCSSSEEESTTSS
T ss_pred             CCHHHhCCCccccCCCCC
Confidence            999999999999998764

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.96  E-value=4.4e-30  Score=263.39  Aligned_cols=251  Identities=29%  Similarity=0.487  Sum_probs=199.8

Q ss_pred             CCCEEEeeCCccCC--CCCchhhhhcccCcEEEcCC-CcCCCCCCccCCCCCCCCEEEcccCCCCccCCCcc-CCCCccE
Q 004704          290 SLQVLDISNNMLSG--HIPHWMGNFSSELEILSMSK-NHLEGNVPVQLNNLERLRILDISENRLSGPIASSL-NLSSVEH  365 (735)
Q Consensus       290 ~L~~L~l~~n~l~~--~~p~~~~~~~~~L~~L~l~~-n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~-~l~~L~~  365 (735)
                      .++.|+++++.+.+  .+|..++.++. |++|++++ |.++|.+|..+.++++|++|++++|++.+..+..+ .+..|+.
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~-L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~  129 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPY-LNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTT-CSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCcc-ccccccccccccccccccccccccccchhhhccccccccccccccchhhhcc
Confidence            45666666666665  35666666665 77777765 56666677777777777777777777777666555 6777888


Q ss_pred             EEccCCcccccCcccccCCCCCcEEeCCCCcccccCChhhhCCCCc-cEEEccCCcCCCCCchhhhcCCCCCEEECcCCc
Q 004704          366 LSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNL-RFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNK  444 (735)
Q Consensus       366 L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~  444 (735)
                      +++++|.+.+.+|..+..++.++.+++++|.+.+.+|..+..+..+ +.+++++|++++..|..+..+..+ .++++++.
T Consensus       130 l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~-~l~l~~~~  208 (313)
T d1ogqa_         130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLA-FVDLSRNM  208 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCS-EEECCSSE
T ss_pred             cccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccccccccc-cccccccc
Confidence            8888888888888888888999999999999988888888887775 889999999988888888777654 78999888


Q ss_pred             CCCCCCchhhcccccccccCCccCCCCCCCcccchhhhcccCCCCCCCccccchhhhhhhhhhhhccccceeEEEEeccc
Q 004704          445 FSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNR  524 (735)
Q Consensus       445 l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  524 (735)
                      +.+.+|..+..                                                                     
T Consensus       209 ~~~~~~~~~~~---------------------------------------------------------------------  219 (313)
T d1ogqa_         209 LEGDASVLFGS---------------------------------------------------------------------  219 (313)
T ss_dssp             EEECCGGGCCT---------------------------------------------------------------------
T ss_pred             ccccccccccc---------------------------------------------------------------------
Confidence            88777765443                                                                     


Q ss_pred             cccccCCcccccceEECCCCcccCCCCccccccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccCCccccC
Q 004704          525 YEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTA  604 (735)
Q Consensus       525 ~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~  604 (735)
                              +++++.+++++|.+++.+| .++.+++|+.|+|++|+++|.+|+.|+++++|++|||++|+++|.+|+ +.+
T Consensus       220 --------~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~  289 (313)
T d1ogqa_         220 --------DKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGN  289 (313)
T ss_dssp             --------TSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STT
T ss_pred             --------ccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-ccc
Confidence                    2567779999999987655 688889999999999999999999999999999999999999999985 678


Q ss_pred             CCCCCeEEcccCc-Cccc
Q 004704          605 LNFLSIFNVSYNN-LSGR  621 (735)
Q Consensus       605 l~~L~~L~ls~N~-l~~~  621 (735)
                      +++|+.+++++|+ +.|.
T Consensus       290 L~~L~~l~l~~N~~l~g~  307 (313)
T d1ogqa_         290 LQRFDVSAYANNKCLCGS  307 (313)
T ss_dssp             GGGSCGGGTCSSSEEEST
T ss_pred             CCCCCHHHhCCCccccCC
Confidence            8999999999998 5554

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.95  E-value=2.4e-26  Score=242.92  Aligned_cols=319  Identities=24%  Similarity=0.286  Sum_probs=192.1

Q ss_pred             cccCcEEECcCCcCCCCCCcccCCCCCCCEEECCCccccCccchhhhhCCCCCCEEEccCCCCCCcCcccccCCCCCCEE
Q 004704          191 LQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHL  270 (735)
Q Consensus       191 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  270 (735)
                      +++|++|++++|.+++ +| .++++++|++|++++|++.+ +++  +..+++|+.|+++++.+++..+  ......+...
T Consensus        65 L~nL~~L~Ls~N~l~~-l~-~l~~L~~L~~L~L~~n~i~~-i~~--l~~l~~L~~L~~~~~~~~~~~~--~~~~~~~~~~  137 (384)
T d2omza2          65 LNNLTQINFSNNQLTD-IT-PLKNLTKLVDILMNNNQIAD-ITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRL  137 (384)
T ss_dssp             CTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCC-CGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEE
T ss_pred             CCCCCEEeCcCCcCCC-Cc-cccCCccccccccccccccc-ccc--cccccccccccccccccccccc--cccccccccc
Confidence            3444444444444442 22 14455555555555555542 221  2345555555555555543221  2233445555


Q ss_pred             EccccccCccccccccCCCCCCEEEeeCCccCCCCCchhhhhcccCcEEEcCCCcCCCCCCccCCCCCCCCEEEcccCCC
Q 004704          271 YFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRL  350 (735)
Q Consensus       271 ~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l  350 (735)
                      ....|.+....+..................     ...+..... ........|...  ....+..+++++.+++++|.+
T Consensus       138 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~l~~~~~l~l~~n~i  209 (384)
T d2omza2         138 ELSSNTISDISALSGLTSLQQLSFGNQVTD-----LKPLANLTT-LERLDISSNKVS--DISVLAKLTNLESLIATNNQI  209 (384)
T ss_dssp             EEEEEEECCCGGGTTCTTCSEEEEEESCCC-----CGGGTTCTT-CCEEECCSSCCC--CCGGGGGCTTCSEEECCSSCC
T ss_pred             ccccccccccccccccccccccccccccch-----hhhhccccc-cccccccccccc--cccccccccccceeeccCCcc
Confidence            555554442222211111111111111111     112222222 333444444332  234455667777777777777


Q ss_pred             CccCCCccCCCCccEEEccCCcccccCcccccCCCCCcEEeCCCCcccccCChhhhCCCCccEEEccCCcCCCCCchhhh
Q 004704          351 SGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLC  430 (735)
Q Consensus       351 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  430 (735)
                      ++..+ ...+++|+.|++++|.++..  +.+..+++|+.|++++|.+++..  .+..+++|++|++++|++.+..  .+.
T Consensus       210 ~~~~~-~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~~~l~~~~--~~~  282 (384)
T d2omza2         210 SDITP-LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLA--PLSGLTKLTELKLGANQISNIS--PLA  282 (384)
T ss_dssp             CCCGG-GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCCCCG--GGT
T ss_pred             CCCCc-ccccCCCCEEECCCCCCCCc--chhhcccccchhccccCccCCCC--cccccccCCEeeccCcccCCCC--ccc
Confidence            65443 23566777788887777643  35677788888888888887543  3677788888888888887533  366


Q ss_pred             cCCCCCEEECcCCcCCCCCCchhhcccccccccCCccCCCCCCCcccchhhhcccCCCCCCCccccchhhhhhhhhhhhc
Q 004704          431 QLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAA  510 (735)
Q Consensus       431 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  510 (735)
                      .++.++.+++++|++++. + .+                                                         
T Consensus       283 ~~~~l~~l~~~~n~l~~~-~-~~---------------------------------------------------------  303 (384)
T d2omza2         283 GLTALTNLELNENQLEDI-S-PI---------------------------------------------------------  303 (384)
T ss_dssp             TCTTCSEEECCSSCCSCC-G-GG---------------------------------------------------------
T ss_pred             cccccccccccccccccc-c-cc---------------------------------------------------------
Confidence            778888888888877631 1 11                                                         


Q ss_pred             cccceeEEEEeccccccccCCcccccceEECCCCcccCCCCccccccccCCeEeCCCCcCcccCcccccCcCCCCEEeCC
Q 004704          511 IDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDIS  590 (735)
Q Consensus       511 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs  590 (735)
                                          ..+++++.|++++|++++. + .+..+++|++|++++|++++ +| .++++++|++||++
T Consensus       304 --------------------~~~~~l~~L~ls~n~l~~l-~-~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~  359 (384)
T d2omza2         304 --------------------SNLKNLTYLTLYFNNISDI-S-PVSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAG  359 (384)
T ss_dssp             --------------------GGCTTCSEEECCSSCCSCC-G-GGGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECC
T ss_pred             --------------------chhcccCeEECCCCCCCCC-c-ccccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECC
Confidence                                1235677899999999854 3 38889999999999999984 44 58999999999999


Q ss_pred             CCcccccCCccccCCCCCCeEEcccC
Q 004704          591 YNKLTGQIPPQLTALNFLSIFNVSYN  616 (735)
Q Consensus       591 ~N~l~~~~p~~l~~l~~L~~L~ls~N  616 (735)
                      +|++++..|  +.++++|+.|+|++|
T Consensus       360 ~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         360 HNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             SSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             CCcCCCChh--hccCCCCCEeeCCCC
Confidence            999997654  889999999999987

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.95  E-value=5.5e-26  Score=240.09  Aligned_cols=211  Identities=26%  Similarity=0.363  Sum_probs=144.7

Q ss_pred             CCCCCCEEEeeCCccCCCCCchhhhhcccCcEEEcCCCcCCCCCCccCCCCCCCCEEEcccCCCCccCCCccCCCCccEE
Q 004704          287 SSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHL  366 (735)
Q Consensus       287 ~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L  366 (735)
                      ..+.........|...  .......++. ++.+++++|.+++..|  +..+++|++|++++|.++.. +....+++|+.+
T Consensus       173 ~~~~~~~~~~~~~~~~--~~~~~~~l~~-~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~~-~~l~~l~~L~~L  246 (384)
T d2omza2         173 NLTTLERLDISSNKVS--DISVLAKLTN-LESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI-GTLASLTNLTDL  246 (384)
T ss_dssp             TCTTCCEEECCSSCCC--CCGGGGGCTT-CSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEE
T ss_pred             cccccccccccccccc--cccccccccc-cceeeccCCccCCCCc--ccccCCCCEEECCCCCCCCc-chhhcccccchh
Confidence            3344444444444432  2233344444 6666666666665433  23455666777777766542 233366777777


Q ss_pred             EccCCcccccCcccccCCCCCcEEeCCCCcccccCChhhhCCCCccEEEccCCcCCCCCchhhhcCCCCCEEECcCCcCC
Q 004704          367 SLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFS  446 (735)
Q Consensus       367 ~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~  446 (735)
                      ++++|.+++..  .+..+++|+.|++++|++++..  .+..++.++.++++.|.+.+ + ..+..+++++.|++++|+++
T Consensus       247 ~l~~n~l~~~~--~~~~~~~L~~L~l~~~~l~~~~--~~~~~~~l~~l~~~~n~l~~-~-~~~~~~~~l~~L~ls~n~l~  320 (384)
T d2omza2         247 DLANNQISNLA--PLSGLTKLTELKLGANQISNIS--PLAGLTALTNLELNENQLED-I-SPISNLKNLTYLTLYFNNIS  320 (384)
T ss_dssp             ECCSSCCCCCG--GGTTCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCSC-C-GGGGGCTTCSEEECCSSCCS
T ss_pred             ccccCccCCCC--cccccccCCEeeccCcccCCCC--cccccccccccccccccccc-c-cccchhcccCeEECCCCCCC
Confidence            77777776543  3667788888888888887432  36677888888888888875 2 34778888999999998887


Q ss_pred             CCCCchhhcccccccccCCccCCCCCCCcccchhhhcccCCCCCCCccccchhhhhhhhhhhhccccceeEEEEeccccc
Q 004704          447 GSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYE  526 (735)
Q Consensus       447 ~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  526 (735)
                      +..+  +.                                                                        
T Consensus       321 ~l~~--l~------------------------------------------------------------------------  326 (384)
T d2omza2         321 DISP--VS------------------------------------------------------------------------  326 (384)
T ss_dssp             CCGG--GG------------------------------------------------------------------------
T ss_pred             CCcc--cc------------------------------------------------------------------------
Confidence            5322  22                                                                        


Q ss_pred             cccCCcccccceEECCCCcccCCCCccccccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCC
Q 004704          527 IYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYN  592 (735)
Q Consensus       527 ~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N  592 (735)
                           .+++|+.|++++|++++ +| .++++++|++|++++|++++.+|  ++++++|++|+|++|
T Consensus       327 -----~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         327 -----SLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             -----GCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             -----cCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence                 23678889999998883 44 58899999999999999997655  899999999999988

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.93  E-value=3e-24  Score=218.69  Aligned_cols=201  Identities=24%  Similarity=0.305  Sum_probs=99.5

Q ss_pred             CCEEECCCccccCccchhhhhCCCCCCEEEccCCCCCCcCcccccCCCCCCEEEccccccCccccccccCCCCCCEEEee
Q 004704          218 LSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDIS  297 (735)
Q Consensus       218 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~  297 (735)
                      .+.++-+++.++ .+|..+   .+++++|++++|+++...+.+|.++++|++|++++|.+....|..|..++.|++|+++
T Consensus        12 ~~~~~C~~~~L~-~lP~~l---~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~   87 (305)
T d1xkua_          12 LRVVQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS   87 (305)
T ss_dssp             TTEEECTTSCCC-SCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCEEEecCCCCC-ccCCCC---CCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEeccc
Confidence            344444444444 344332   1345555555555554433445555555555555555554444555555555555555


Q ss_pred             CCccCCCCCchhhhhcccCcEEEcCCCcCCCCCCccCCCCCCCCEEEcccCCCCccCCCccCCCCccEEEccCCcccccC
Q 004704          298 NNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLI  377 (735)
Q Consensus       298 ~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~  377 (735)
                      +|+++ .+|..+.   ..++.|++.+|.+.+..+..+.....+..++...|....                     ....
T Consensus        88 ~n~l~-~l~~~~~---~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~---------------------~~~~  142 (305)
T d1xkua_          88 KNQLK-ELPEKMP---KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS---------------------SGIE  142 (305)
T ss_dssp             SSCCS-BCCSSCC---TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCG---------------------GGBC
T ss_pred             CCccC-cCccchh---hhhhhhhccccchhhhhhhhhhccccccccccccccccc---------------------cCCC
Confidence            55554 3443221   125555555555554444444444444455544443221                     1122


Q ss_pred             cccccCCCCCcEEeCCCCcccccCChhhhCCCCccEEEccCCcCCCCCchhhhcCCCCCEEECcCCcCCCCCC
Q 004704          378 PGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIP  450 (735)
Q Consensus       378 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p  450 (735)
                      +..+..+++|+.+++++|.++ .+|..+  +++|+.|++++|...+..+..+.+++.++.|++++|.+++..+
T Consensus       143 ~~~~~~l~~L~~l~l~~n~l~-~l~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~  212 (305)
T d1xkua_         143 NGAFQGMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDN  212 (305)
T ss_dssp             TTGGGGCTTCCEEECCSSCCC-SCCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECT
T ss_pred             ccccccccccCccccccCCcc-ccCccc--CCccCEEECCCCcCCCCChhHhhcccccccccccccccccccc
Confidence            233444555555555555554 233222  3566666666666665556666666666666666666554333

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.93  E-value=6.6e-24  Score=216.11  Aligned_cols=243  Identities=20%  Similarity=0.283  Sum_probs=168.1

Q ss_pred             CcEEECcCCcCCCCCCcccCCCCCCCEEECCCccccCccchhhhhCCCCCCEEEccCCCCCCcCcccccCCCCCCEEEcc
Q 004704          194 LMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFE  273 (735)
Q Consensus       194 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  273 (735)
                      .+.++-++..++ .+|..+.  +++++|++++|+++ .++...|.++++|++|++++|.+....+..|.++++|++|+++
T Consensus        12 ~~~~~C~~~~L~-~lP~~l~--~~l~~L~Ls~N~i~-~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~   87 (305)
T d1xkua_          12 LRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS   87 (305)
T ss_dssp             TTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCEEEecCCCCC-ccCCCCC--CCCCEEECcCCcCC-CcChhHhhccccccccccccccccccchhhhhCCCccCEeccc
Confidence            444555555555 4555442  45666666666665 5555555566677777777777766666667777777777777


Q ss_pred             ccccCccccccccCCCCCCEEEeeCCccCCCCCchhhhhcccCcEEEcCCCcCC--CCCCccCCCCCCCCEEEcccCCCC
Q 004704          274 NNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLE--GNVPVQLNNLERLRILDISENRLS  351 (735)
Q Consensus       274 ~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~--~~~~~~l~~l~~L~~L~L~~n~l~  351 (735)
                      +|+++ .+|..+  ...++.|++.+|.+.+..+..+..... +..++...|...  ...+..+..+++|+.+++++|.+.
T Consensus        88 ~n~l~-~l~~~~--~~~l~~L~~~~n~l~~l~~~~~~~~~~-~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~  163 (305)
T d1xkua_          88 KNQLK-ELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQ-MIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT  163 (305)
T ss_dssp             SSCCS-BCCSSC--CTTCCEEECCSSCCCBBCHHHHTTCTT-CCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred             CCccC-cCccch--hhhhhhhhccccchhhhhhhhhhcccc-ccccccccccccccCCCccccccccccCccccccCCcc
Confidence            77776 344332  356777777777776333323333333 677777766543  234556777888888888888876


Q ss_pred             ccCCCccCCCCccEEEccCCcccccCcccccCCCCCcEEeCCCCcccccCChhhhCCCCccEEEccCCcCCCCCchhhhc
Q 004704          352 GPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQ  431 (735)
Q Consensus       352 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  431 (735)
                      .....  .+++|+.|++++|...+..+..+..++.++.|++++|.+++..+.++.++++|++|+|++|+++ .+|+++..
T Consensus       164 ~l~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~  240 (305)
T d1xkua_         164 TIPQG--LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLAD  240 (305)
T ss_dssp             SCCSS--CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTT
T ss_pred             ccCcc--cCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccccccc-cccccccc
Confidence            54322  3577888888888888888888888888888888888888777788888888888888888887 56778888


Q ss_pred             CCCCCEEECcCCcCCC
Q 004704          432 LQKLAMMDLSRNKFSG  447 (735)
Q Consensus       432 l~~L~~L~Ls~N~l~~  447 (735)
                      +++|++|++++|+|+.
T Consensus       241 l~~L~~L~Ls~N~i~~  256 (305)
T d1xkua_         241 HKYIQVVYLHNNNISA  256 (305)
T ss_dssp             CSSCCEEECCSSCCCC
T ss_pred             ccCCCEEECCCCccCc
Confidence            8888888888888873

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=2.5e-24  Score=216.66  Aligned_cols=226  Identities=19%  Similarity=0.210  Sum_probs=121.7

Q ss_pred             EEEeeCCccCCCCCchhhhhcccCcEEEcCCCcCCCCCCccCCCCCCCCEEEcccCCCCccCCCcc-CCCCccEEEcc-C
Q 004704          293 VLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSL-NLSSVEHLSLQ-K  370 (735)
Q Consensus       293 ~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~-~l~~L~~L~l~-~  370 (735)
                      .++.++++++ .+|..+   ++.+++|+|++|++++..+.+|.++++|++|++++|++....+..+ .+..++.+... .
T Consensus        15 ~v~c~~~~L~-~iP~~i---p~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~   90 (284)
T d1ozna_          15 TTSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN   90 (284)
T ss_dssp             EEECCSSCCS-SCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             EEEcCCCCCC-ccCCCC---CCCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccc
Confidence            3455555555 555533   2336677777777665555566666666666666666665444443 34444444432 3


Q ss_pred             CcccccCcccccCCCCCcEEeCCCCcccccCChhhhCCCCccEEEccCCcCCCCCchhhhcCCCCCEEECcCCcCCCCCC
Q 004704          371 NALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIP  450 (735)
Q Consensus       371 n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p  450 (735)
                      +.+....+                        ..+.++++|++|++++|.+....+..+...++|+.+++++|++++..+
T Consensus        91 ~~~~~l~~------------------------~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~  146 (284)
T d1ozna_          91 AQLRSVDP------------------------ATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPD  146 (284)
T ss_dssp             TTCCCCCT------------------------TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred             cccccccc------------------------hhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccCh
Confidence            33333334                        444444455555555555444444444444555555555555543333


Q ss_pred             chhhcccccccccCCccCCCCCCCcccchhhhcccCCCCCCCccccchhhhhhhhhhhhccccceeEEEEeccccccccC
Q 004704          451 PCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNG  530 (735)
Q Consensus       451 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  530 (735)
                      ..|..                                                                           
T Consensus       147 ~~f~~---------------------------------------------------------------------------  151 (284)
T d1ozna_         147 DTFRD---------------------------------------------------------------------------  151 (284)
T ss_dssp             TTTTT---------------------------------------------------------------------------
T ss_pred             hHhcc---------------------------------------------------------------------------
Confidence            32221                                                                           


Q ss_pred             CcccccceEECCCCcccCCCCccccccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccCCccccCCCCCCe
Q 004704          531 SNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSI  610 (735)
Q Consensus       531 ~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~  610 (735)
                        .+.|+.|++++|++++..|..|..+++|+.+++++|++++..|..|+++++|++||+++|++++..|..+..+++|++
T Consensus       152 --~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~  229 (284)
T d1ozna_         152 --LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQY  229 (284)
T ss_dssp             --CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCE
T ss_pred             --ccchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCE
Confidence              123444555555555445555555666666666666666555666666666666666666666555555666666666


Q ss_pred             EEcccCcCcccCC
Q 004704          611 FNVSYNNLSGRTP  623 (735)
Q Consensus       611 L~ls~N~l~~~~p  623 (735)
                      |++++|++.+.++
T Consensus       230 L~l~~N~l~C~C~  242 (284)
T d1ozna_         230 LRLNDNPWVCDCR  242 (284)
T ss_dssp             EECCSSCEECSGG
T ss_pred             EEecCCCCCCCcc
Confidence            6666666655444

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.6e-23  Score=210.61  Aligned_cols=228  Identities=18%  Similarity=0.192  Sum_probs=187.6

Q ss_pred             EEEcccCCCCccCCCccCCCCccEEEccCCcccccCcccccCCCCCcEEeCCCCcccccCChhhhCCCCccEEEcc-CCc
Q 004704          342 ILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLG-GNH  420 (735)
Q Consensus       342 ~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~-~n~  420 (735)
                      .++.+++.++..+...  .+++++|+|++|+++...+..|.++++|++|++++|++.+..+..+..++.++.+... .|.
T Consensus        15 ~v~c~~~~L~~iP~~i--p~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~   92 (284)
T d1ozna_          15 TTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ   92 (284)
T ss_dssp             EEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred             EEEcCCCCCCccCCCC--CCCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccc
Confidence            3455555555332221  2457788888888887777788889999999999999998888888888899998765 566


Q ss_pred             CCCCCchhhhcCCCCCEEECcCCcCCCCCCchhhcccccccccCCccCCCCCCCcccchhhhcccCCCCCCCccccchhh
Q 004704          421 LQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWR  500 (735)
Q Consensus       421 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  500 (735)
                      ++...+..|.++++|+.|++++|.+.+..+..+..                                             
T Consensus        93 ~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~---------------------------------------------  127 (284)
T d1ozna_          93 LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRG---------------------------------------------  127 (284)
T ss_dssp             CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTT---------------------------------------------
T ss_pred             cccccchhhcccccCCEEecCCcccccccccccch---------------------------------------------
Confidence            77667888999999999999999987544433322                                             


Q ss_pred             hhhhhhhhhccccceeEEEEeccccccccCCcccccceEECCCCcccCCCCccccccccCCeEeCCCCcCcccCcccccC
Q 004704          501 WLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSN  580 (735)
Q Consensus       501 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~  580 (735)
                                                      .+.|+.+++++|++++..+..|..+++|+.|++++|++++..|.+|.+
T Consensus       128 --------------------------------~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~  175 (284)
T d1ozna_         128 --------------------------------LAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRG  175 (284)
T ss_dssp             --------------------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTT
T ss_pred             --------------------------------hcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhcc
Confidence                                            356888999999999777788999999999999999999988999999


Q ss_pred             cCCCCEEeCCCCcccccCCccccCCCCCCeEEcccCcCcccCCC-CCCCCccCCcccCCCCCCCCcccc
Q 004704          581 LKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPD-KGQFATFDESSYRGNPSLCAWLIQ  648 (735)
Q Consensus       581 l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~-~~~~~~~~~~~~~gN~~lc~~~~~  648 (735)
                      +++|+.+++++|++++..|..|..+++|++||+++|++++..|. ......+....+.|||+.|+|...
T Consensus       176 l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~~  244 (284)
T d1ozna_         176 LHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR  244 (284)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH
T ss_pred             ccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCccch
Confidence            99999999999999999999999999999999999999987775 345566777889999999998753

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=8.7e-23  Score=202.84  Aligned_cols=202  Identities=20%  Similarity=0.193  Sum_probs=141.4

Q ss_pred             CCCCCCEEEcccCCCCccCCCccCCCCccEEEccCCcccccCcccccCCCCCcEEeCCCCcccccCChhhhCCCCccEEE
Q 004704          336 NLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLL  415 (735)
Q Consensus       336 ~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  415 (735)
                      ....+.+++.+++.++..++..  .+++++|+|++|.+++..+..|.++++|++|++++|+|+. ++ .++.+++|++|+
T Consensus         8 ~~~~~~~v~C~~~~L~~iP~~l--p~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~   83 (266)
T d1p9ag_           8 KVASHLEVNCDKRNLTALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQ-VDGTLPVLGTLD   83 (266)
T ss_dssp             CSTTCCEEECTTSCCSSCCSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EE-CCSCCTTCCEEE
T ss_pred             ccCCCeEEEccCCCCCeeCcCc--CcCCCEEECcCCcCCCcCHHHhhccccccccccccccccc-cc-cccccccccccc
Confidence            4456667788888877543332  2467888888888877666777778888888888888773 33 345677888888


Q ss_pred             ccCCcCCCCCchhhhcCCCCCEEECcCCcCCCCCCchhhcccccccccCCccCCCCCCCcccchhhhcccCCCCCCCccc
Q 004704          416 LGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTM  495 (735)
Q Consensus       416 L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  495 (735)
                      +++|++++ .+..+..+++|+.|++++|++.+..+..+..                                        
T Consensus        84 Ls~N~l~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~----------------------------------------  122 (266)
T d1p9ag_          84 LSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRG----------------------------------------  122 (266)
T ss_dssp             CCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTT----------------------------------------
T ss_pred             cccccccc-cccccccccccccccccccccceeecccccc----------------------------------------
Confidence            88888773 4566777778888888877776433332221                                        


Q ss_pred             cchhhhhhhhhhhhccccceeEEEEeccccccccCCcccccceEECCCCcccCCCCccccccccCCeEeCCCCcCcccCc
Q 004704          496 FGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIP  575 (735)
Q Consensus       496 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p  575 (735)
                                                           +.+++.|++++|.+++..+..+..++.|+.|++++|++++..+
T Consensus       123 -------------------------------------l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~  165 (266)
T d1p9ag_         123 -------------------------------------LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPA  165 (266)
T ss_dssp             -------------------------------------CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCT
T ss_pred             -------------------------------------ccccccccccccccceeccccccccccchhcccccccccccCc
Confidence                                                 2456667777777776666666777777778888887777777


Q ss_pred             ccccCcCCCCEEeCCCCcccccCCccccCCCCCCeEEcccCcCcc
Q 004704          576 ESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSG  620 (735)
Q Consensus       576 ~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~  620 (735)
                      +.|+.+++|++|||++|+|+ .+|.++..+++|+.|+|++|++.+
T Consensus       166 ~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~C  209 (266)
T d1p9ag_         166 GLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC  209 (266)
T ss_dssp             TTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred             cccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCCC
Confidence            77777777888888877777 677777777777777776665543

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=2.7e-22  Score=199.25  Aligned_cols=206  Identities=23%  Similarity=0.211  Sum_probs=167.1

Q ss_pred             CCCCccEEEccCCcccccCcccccCCCCCcEEeCCCCcccccCChhhhCCCCccEEEccCCcCCCCCchhhhcCCCCCEE
Q 004704          359 NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMM  438 (735)
Q Consensus       359 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  438 (735)
                      ....+.+++.+++.++. +|..+.  +++++|+|++|+|++..+..|.++++|++|+|++|+++. ++ .+..+++|++|
T Consensus         8 ~~~~~~~v~C~~~~L~~-iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L   82 (266)
T d1p9ag_           8 KVASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQ-VDGTLPVLGTL   82 (266)
T ss_dssp             CSTTCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EE-CCSCCTTCCEE
T ss_pred             ccCCCeEEEccCCCCCe-eCcCcC--cCCCEEECcCCcCCCcCHHHhhccccccccccccccccc-cc-ccccccccccc
Confidence            45566778888888884 565553  578999999999987667788999999999999999984 44 35788999999


Q ss_pred             ECcCCcCCCCCCchhhcccccccccCCccCCCCCCCcccchhhhcccCCCCCCCccccchhhhhhhhhhhhccccceeEE
Q 004704          439 DLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIE  518 (735)
Q Consensus       439 ~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  518 (735)
                      ++++|++++. +..+.                                                                
T Consensus        83 ~Ls~N~l~~~-~~~~~----------------------------------------------------------------   97 (266)
T d1p9ag_          83 DLSHNQLQSL-PLLGQ----------------------------------------------------------------   97 (266)
T ss_dssp             ECCSSCCSSC-CCCTT----------------------------------------------------------------
T ss_pred             cccccccccc-ccccc----------------------------------------------------------------
Confidence            9999998743 33222                                                                


Q ss_pred             EEeccccccccCCcccccceEECCCCcccCCCCccccccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccC
Q 004704          519 FAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQI  598 (735)
Q Consensus       519 ~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~  598 (735)
                                   .++.|+.|++++|.+.+..+..+..+.+++.|++++|.+++..+..+..+++|+.|++++|++++..
T Consensus        98 -------------~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~  164 (266)
T d1p9ag_          98 -------------TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELP  164 (266)
T ss_dssp             -------------TCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCC
T ss_pred             -------------cccccccccccccccceeeccccccccccccccccccccceeccccccccccchhcccccccccccC
Confidence                         2367888999999998777788889999999999999999888888899999999999999999888


Q ss_pred             CccccCCCCCCeEEcccCcCcccCCCCCCCCccCCcccCCCCCCCCccc
Q 004704          599 PPQLTALNFLSIFNVSYNNLSGRTPDKGQFATFDESSYRGNPSLCAWLI  647 (735)
Q Consensus       599 p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~gN~~lc~~~~  647 (735)
                      +..+..+++|++|+|++|+|+...+.......+....+.||||.|+|.+
T Consensus       165 ~~~~~~l~~L~~L~Ls~N~L~~lp~~~~~~~~L~~L~L~~Np~~CdC~~  213 (266)
T d1p9ag_         165 AGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNCEI  213 (266)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBCCSGGG
T ss_pred             ccccccccccceeecccCCCcccChhHCCCCCCCEEEecCCCCCCCcch
Confidence            8889999999999999999984333345566677788999999998754

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.81  E-value=1.6e-17  Score=171.98  Aligned_cols=219  Identities=27%  Similarity=0.323  Sum_probs=99.6

Q ss_pred             cCcEEECcCCcCCCCCCcccCCCCCCCEEECCCccccCccchhhhhCCCCCCEEEccCCCCCCcCcccccCCCCCCEEEc
Q 004704          193 KLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYF  272 (735)
Q Consensus       193 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  272 (735)
                      ++++|+++++.++ .+|+.   .++|++|++++|+++ .+|..    ..+|++|++++|.++.. +. +  .+.|++|++
T Consensus        39 ~l~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~-~lp~~----~~~L~~L~l~~n~l~~l-~~-l--p~~L~~L~L  105 (353)
T d1jl5a_          39 QAHELELNNLGLS-SLPEL---PPHLESLVASCNSLT-ELPEL----PQSLKSLLVDNNNLKAL-SD-L--PPLLEYLGV  105 (353)
T ss_dssp             TCSEEECTTSCCS-CCCSC---CTTCSEEECCSSCCS-SCCCC----CTTCCEEECCSSCCSCC-CS-C--CTTCCEEEC
T ss_pred             CCCEEEeCCCCCC-CCCCC---CCCCCEEECCCCCCc-ccccc----hhhhhhhhhhhcccchh-hh-h--ccccccccc
Confidence            3444444444444 33322   234444444444444 33321    23444555554444421 11 0  123555555


Q ss_pred             cccccCccccccccCCCCCCEEEeeCCccCCCCCchhhhhcccCcEEEcCCCcCCCCCCccCCCCCCCCEEEcccCCCCc
Q 004704          273 ENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSG  352 (735)
Q Consensus       273 ~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~  352 (735)
                      ++|.+. .+|. +..+++|+.|+++++.+. ..+...   . .+..+.+.++...  ....+..++.++.+++++|....
T Consensus       106 ~~n~l~-~lp~-~~~l~~L~~L~l~~~~~~-~~~~~~---~-~l~~l~~~~~~~~--~~~~l~~l~~l~~L~l~~n~~~~  176 (353)
T d1jl5a_         106 SNNQLE-KLPE-LQNSSFLKIIDVDNNSLK-KLPDLP---P-SLEFIAAGNNQLE--ELPELQNLPFLTAIYADNNSLKK  176 (353)
T ss_dssp             CSSCCS-SCCC-CTTCTTCCEEECCSSCCS-CCCCCC---T-TCCEEECCSSCCS--SCCCCTTCTTCCEEECCSSCCSS
T ss_pred             cccccc-cccc-hhhhccceeecccccccc-cccccc---c-cccchhhcccccc--ccccccccccceecccccccccc
Confidence            555554 2332 344555555555555554 222211   1 1444555444332  22334455566666666665543


Q ss_pred             cCCCccCCCCccEEEccCCcccccCcccccCCCCCcEEeCCCCcccccCChhhhCCCCccEEEccCCcCCCCCchhhhcC
Q 004704          353 PIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQL  432 (735)
Q Consensus       353 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  432 (735)
                      ....   ....+.+...++.+. .++ .+..++.|+.+++++|... ..+.   ...++..+.+.++.+.. .+.   ..
T Consensus       177 ~~~~---~~~~~~l~~~~~~~~-~~~-~~~~l~~L~~l~l~~n~~~-~~~~---~~~~l~~~~~~~~~~~~-~~~---~~  243 (353)
T d1jl5a_         177 LPDL---PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLK-TLPD---LPPSLEALNVRDNYLTD-LPE---LP  243 (353)
T ss_dssp             CCCC---CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCS-SCCS---CCTTCCEEECCSSCCSC-CCC---CC
T ss_pred             cccc---ccccccccccccccc-ccc-ccccccccccccccccccc-cccc---ccccccccccccccccc-ccc---cc
Confidence            2221   122334444444433 222 2455666777777776655 2332   23456667777776653 222   22


Q ss_pred             CCCCEEECcCCcCC
Q 004704          433 QKLAMMDLSRNKFS  446 (735)
Q Consensus       433 ~~L~~L~Ls~N~l~  446 (735)
                      +.+...++..+.+.
T Consensus       244 ~~l~~~~~~~~~~~  257 (353)
T d1jl5a_         244 QSLTFLDVSENIFS  257 (353)
T ss_dssp             TTCCEEECCSSCCS
T ss_pred             cccccccccccccc
Confidence            34555666555443

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.81  E-value=2e-17  Score=171.31  Aligned_cols=308  Identities=25%  Similarity=0.298  Sum_probs=162.4

Q ss_pred             CeeEEEeeCCCCCCCCchhhhCCCCCCEEEccCCcCcccCchHHHhCCCCCcEEECcCCcCcccCcCCcCCCCCcCEEEc
Q 004704           95 QLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDI  174 (735)
Q Consensus        95 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L  174 (735)
                      ++++|+|++++++ .+|+.   .++|++|++++|+|+ .+|.    ...+|+.|++++|+++.+..    -.+.|++|++
T Consensus        39 ~l~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~-~lp~----~~~~L~~L~l~~n~l~~l~~----lp~~L~~L~L  105 (353)
T d1jl5a_          39 QAHELELNNLGLS-SLPEL---PPHLESLVASCNSLT-ELPE----LPQSLKSLLVDNNNLKALSD----LPPLLEYLGV  105 (353)
T ss_dssp             TCSEEECTTSCCS-CCCSC---CTTCSEEECCSSCCS-SCCC----CCTTCCEEECCSSCCSCCCS----CCTTCCEEEC
T ss_pred             CCCEEEeCCCCCC-CCCCC---CCCCCEEECCCCCCc-cccc----chhhhhhhhhhhcccchhhh----hccccccccc
Confidence            4555555555554 24432   345666666666665 5553    23456666666666554321    1134666666


Q ss_pred             cCCcCCCcCChhHHHhcccCcEEECcCCcCCCCCCcccCCCCCCCEEECCCccccCccchhhhhCCCCCCEEEccCCCCC
Q 004704          175 SCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFE  254 (735)
Q Consensus       175 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~  254 (735)
                      ++|.+. .+|.. + .+++|+.|+++++.+.. .+.   ....+..+.+..+.....   ..+..++.++.+++++|...
T Consensus       106 ~~n~l~-~lp~~-~-~l~~L~~L~l~~~~~~~-~~~---~~~~l~~l~~~~~~~~~~---~~l~~l~~l~~L~l~~n~~~  175 (353)
T d1jl5a_         106 SNNQLE-KLPEL-Q-NSSFLKIIDVDNNSLKK-LPD---LPPSLEFIAAGNNQLEEL---PELQNLPFLTAIYADNNSLK  175 (353)
T ss_dssp             CSSCCS-SCCCC-T-TCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSC---CCCTTCTTCCEEECCSSCCS
T ss_pred             cccccc-cccch-h-hhccceeeccccccccc-ccc---ccccccchhhcccccccc---ccccccccceeccccccccc
Confidence            666665 45532 2 25566666666665542 222   234455555555443311   11234556666666666554


Q ss_pred             CcCcccccCCCCCCEEEccccccCccccccccCCCCCCEEEeeCCccCCCCCchhhhhcccCcEEEcCCCcCCCCCCccC
Q 004704          255 GQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQL  334 (735)
Q Consensus       255 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l  334 (735)
                      ... .   .....+.+...++.+. ..+ .+..++.|+.+++++|... .++...    .++..+.+.++.+.. .+.  
T Consensus       176 ~~~-~---~~~~~~~l~~~~~~~~-~~~-~~~~l~~L~~l~l~~n~~~-~~~~~~----~~l~~~~~~~~~~~~-~~~--  241 (353)
T d1jl5a_         176 KLP-D---LPLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLK-TLPDLP----PSLEALNVRDNYLTD-LPE--  241 (353)
T ss_dssp             SCC-C---CCTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCS-SCCSCC----TTCCEEECCSSCCSC-CCC--
T ss_pred             ccc-c---cccccccccccccccc-ccc-ccccccccccccccccccc-cccccc----ccccccccccccccc-ccc--
Confidence            321 1   1223344454444443 222 2455666777777766655 333321    226666666666552 221  


Q ss_pred             CCCCCCCEEEcccCCCCccCCCccCCCCccEEEccCCcccccCcccccCCCCCcEEeCCCCcccccCChhhhCCCCccEE
Q 004704          335 NNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFL  414 (735)
Q Consensus       335 ~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  414 (735)
                       ....+...++..+.+.+....   .......++..+.+.+.    ...+++|++|++++|+++ .+|..   +++|+.|
T Consensus       242 -~~~~l~~~~~~~~~~~~l~~l---~~~~~~~~~~~~~~~~~----~~~~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L  309 (353)
T d1jl5a_         242 -LPQSLTFLDVSENIFSGLSEL---PPNLYYLNASSNEIRSL----CDLPPSLEELNVSNNKLI-ELPAL---PPRLERL  309 (353)
T ss_dssp             -CCTTCCEEECCSSCCSEESCC---CTTCCEEECCSSCCSEE----CCCCTTCCEEECCSSCCS-CCCCC---CTTCCEE
T ss_pred             -ccccccccccccccccccccc---cchhcccccccCccccc----cccCCCCCEEECCCCccC-ccccc---cCCCCEE
Confidence             234555666655554432111   12334455555555432    233567888888888877 55543   4678888


Q ss_pred             EccCCcCCCCCchhhhcCCCCCEEECcCCcCCCCCCchhhcc
Q 004704          415 LLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANV  456 (735)
Q Consensus       415 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l  456 (735)
                      ++++|+++ .+|+.   +++|++|++++|+++ .+|.....+
T Consensus       310 ~L~~N~L~-~l~~~---~~~L~~L~L~~N~L~-~lp~~~~~L  346 (353)
T d1jl5a_         310 IASFNHLA-EVPEL---PQNLKQLHVEYNPLR-EFPDIPESV  346 (353)
T ss_dssp             ECCSSCCS-CCCCC---CTTCCEEECCSSCCS-SCCCCCTTC
T ss_pred             ECCCCcCC-ccccc---cCCCCEEECcCCcCC-CCCcccccc
Confidence            88888887 45542   457888888888876 455443333

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=7.1e-21  Score=205.36  Aligned_cols=379  Identities=20%  Similarity=0.204  Sum_probs=199.0

Q ss_pred             CcCEEEccCCcCCCcCChhHHHhcccCcEEECcCCcCCC----CCCcccCCCCCCCEEECCCccccCccchhhhh----C
Q 004704          168 FLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEG----NIPYSAGEMKELSLLDLSRNYFSGGLSQSVVT----G  239 (735)
Q Consensus       168 ~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~----~  239 (735)
                      +|++||+++|++++..-..+...+++++.|+|++|.++.    .++..+..+++|++|+|++|+++......+..    .
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~   82 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   82 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence            356666666666543323344445667777777776652    22344566777777777777665211112221    2


Q ss_pred             CCCCCEEEccCCCCCCc----CcccccCCCCCCEEEccccccCccccccc----c-CCCCCCEEEeeCCccCCCC----C
Q 004704          240 CFSLELLDLSNNNFEGQ----FFSEYMNLTRLRHLYFENNNFSGKIKDGL----L-SSTSLQVLDISNNMLSGHI----P  306 (735)
Q Consensus       240 l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~l----~-~~~~L~~L~l~~n~l~~~~----p  306 (735)
                      ..+|++|++++|.+++.    ++..+..+++|++|++++|.+.......+    . ...................    .
T Consensus        83 ~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (460)
T d1z7xw1          83 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA  162 (460)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred             CCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhcccc
Confidence            24677777777776643    23445667777777777776653221111    1 1122333333332222100    0


Q ss_pred             chhhhhcccCcEEEcCCCcCCCCC----CccC-CCCCCCCEEEcccCCCCccCCC----cc-CCCCccEEEccCCccccc
Q 004704          307 HWMGNFSSELEILSMSKNHLEGNV----PVQL-NNLERLRILDISENRLSGPIAS----SL-NLSSVEHLSLQKNALNGL  376 (735)
Q Consensus       307 ~~~~~~~~~L~~L~l~~n~l~~~~----~~~l-~~l~~L~~L~L~~n~l~~~~~~----~~-~l~~L~~L~l~~n~l~~~  376 (735)
                      ..+..... ++.++++++......    ...+ ..-.....+++..+.+......    .. ..+.++.+++.+|.+...
T Consensus       163 ~~l~~~~~-~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~  241 (460)
T d1z7xw1         163 SVLRAKPD-FKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV  241 (460)
T ss_dssp             HHHHHCTT-CCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred             cccccccc-cccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhcccccc
Confidence            11122222 566666655543110    0000 1112344566665544321110    11 456667777776665321


Q ss_pred             -----CcccccCCCCCcEEeCCCCccccc----CChhhhCCCCccEEEccCCcCCCCCchhh-----hcCCCCCEEECcC
Q 004704          377 -----IPGELFRSCKLVTLNLRDNTFSGR----IPHQINEHSNLRFLLLGGNHLQGPIPDQL-----CQLQKLAMMDLSR  442 (735)
Q Consensus       377 -----~~~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-----~~l~~L~~L~Ls~  442 (735)
                           ..........++.+++++|.+...    ....+...+.++.+++++|.+.......+     .....|+.+++++
T Consensus       242 ~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~  321 (460)
T d1z7xw1         242 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKS  321 (460)
T ss_dssp             HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred             ccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhccccccccccccccccc
Confidence                 122333455677777777766532    22334456677777777777653222211     1234677777777


Q ss_pred             CcCCCCCCchhhcccccccccCCccCCCCCCCcccchhhhcccCCCCCCCccccchhhhhhhhhhhhccccceeEEEEec
Q 004704          443 NKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMK  522 (735)
Q Consensus       443 N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  522 (735)
                      |.++......++.+.                                                                 
T Consensus       322 ~~l~~~~~~~l~~~~-----------------------------------------------------------------  336 (460)
T d1z7xw1         322 CSFTAACCSHFSSVL-----------------------------------------------------------------  336 (460)
T ss_dssp             SCCBGGGHHHHHHHH-----------------------------------------------------------------
T ss_pred             cchhhhhhhhccccc-----------------------------------------------------------------
Confidence            766532222221110                                                                 


Q ss_pred             cccccccCCcccccceEECCCCcccCC----CCcccc-ccccCCeEeCCCCcCccc----CcccccCcCCCCEEeCCCCc
Q 004704          523 NRYEIYNGSNVNRVTGLDLSCNQLTGE----IPSDIG-QLQAILALNLSNNSLSGS----IPESFSNLKMIESLDISYNK  593 (735)
Q Consensus       523 ~~~~~~~~~~l~~L~~LdLs~N~l~~~----~p~~l~-~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~LdLs~N~  593 (735)
                              ...++|++|||++|++++.    +++.+. ..+.|++|+|++|.|+..    +++.+...++|++|||++|+
T Consensus       337 --------~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~  408 (460)
T d1z7xw1         337 --------AQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNC  408 (460)
T ss_dssp             --------HHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred             --------ccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCc
Confidence                    1124677888888887642    223332 356688888888888743    44556677888888888888


Q ss_pred             ccccCCcc----cc-CCCCCCeEEcccCcCcc
Q 004704          594 LTGQIPPQ----LT-ALNFLSIFNVSYNNLSG  620 (735)
Q Consensus       594 l~~~~p~~----l~-~l~~L~~L~ls~N~l~~  620 (735)
                      ++......    +. ....|+.|++++|.+..
T Consensus       409 i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~  440 (460)
T d1z7xw1         409 LGDAGILQLVESVRQPGCLLEQLVLYDIYWSE  440 (460)
T ss_dssp             CCHHHHHHHHHHHTSTTCCCCEEECTTCCCCH
T ss_pred             CCHHHHHHHHHHHHhCCCccCEEECCCCCCCH
Confidence            87543322    22 23468888888887764

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=2.5e-20  Score=201.05  Aligned_cols=380  Identities=19%  Similarity=0.136  Sum_probs=225.8

Q ss_pred             CCCEEeCCCCcccccCChhhhhcCCCCCeeecccccccccccCCCCCCCCCeeEEEeeCCCCCC----CCchhhhCCCCC
Q 004704           45 SLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNG----SYPDFLLHQYHL  120 (735)
Q Consensus        45 ~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~----~~~~~l~~l~~L  120 (735)
                      +|+.||+++|++++.--...+..+++++.|+|                         ++|+++.    .+..++..+++|
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L-------------------------~~~~i~~~~~~~l~~~L~~~~~L   57 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRL-------------------------DDCGLTEARCKDISSALRVNPAL   57 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEE-------------------------ESSCCCHHHHHHHHHHHHTCTTC
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEe-------------------------CCCCCCHHHHHHHHHHHhcCCCC
Confidence            57788888888875322233444555555555                         4454442    234556677778


Q ss_pred             CEEEccCCcCcccCchHHHh----CCCCCcEEECcCCcCccc----CcCCcCCCCCcCEEEccCCcCCCcCChhHHHhc-
Q 004704          121 KYLDLSHNKLVGNFPTWLLR----NNPKLEVLLLKNNSFSGI----LQLPKAKHDFLHHLDISCNNFRGKLPHNMGVIL-  191 (735)
Q Consensus       121 ~~L~Ls~n~l~~~~p~~~~~----~l~~L~~L~L~~n~l~~~----~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l-  191 (735)
                      ++|||++|.++..-...+..    ...+|++|++++|.++..    ++..+..+++|++|++++|.+.......+...+ 
T Consensus        58 ~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~  137 (460)
T d1z7xw1          58 AELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLL  137 (460)
T ss_dssp             CEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHT
T ss_pred             CEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhccc
Confidence            88888877775321122222    234678888888777653    233456677788888888876532222222211 


Q ss_pred             ---ccCcEEECcCCcCCCC----CCcccCCCCCCCEEECCCccccCc----cchhhhhCCCCCCEEEccCCCCCCc----
Q 004704          192 ---QKLMYMDISKNCFEGN----IPYSAGEMKELSLLDLSRNYFSGG----LSQSVVTGCFSLELLDLSNNNFEGQ----  256 (735)
Q Consensus       192 ---~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~----~~~~~~~~l~~L~~L~L~~n~l~~~----  256 (735)
                         ............+...    ....+.....++.++++.+.....    ....+.........+++..+.+...    
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~  217 (460)
T d1z7xw1         138 DPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRD  217 (460)
T ss_dssp             STTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHH
T ss_pred             ccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhc
Confidence               1223333333322210    011233456778888877765421    1111222334667788877766532    


Q ss_pred             CcccccCCCCCCEEEccccccCc-----cccccccCCCCCCEEEeeCCccCCC----CCchhhhhcccCcEEEcCCCcCC
Q 004704          257 FFSEYMNLTRLRHLYFENNNFSG-----KIKDGLLSSTSLQVLDISNNMLSGH----IPHWMGNFSSELEILSMSKNHLE  327 (735)
Q Consensus       257 ~~~~~~~l~~L~~L~L~~n~l~~-----~~~~~l~~~~~L~~L~l~~n~l~~~----~p~~~~~~~~~L~~L~l~~n~l~  327 (735)
                      ....+...+.++.+++.+|.+..     ...........++.+++++|.+...    ....+...+. ++.+++++|.+.
T Consensus       218 ~~~~l~~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~-l~~l~l~~n~i~  296 (460)
T d1z7xw1         218 LCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKES-LKELSLAGNELG  296 (460)
T ss_dssp             HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTT-CCEEECTTCCCH
T ss_pred             ccccccccccccccchhhccccccccchhhccccccccccccccccccccccccccccccccccccc-cccccccccccc
Confidence            11234556788888888887642     1233344567888899988887632    1222334444 888888888876


Q ss_pred             CCCCc----c-CCCCCCCCEEEcccCCCCccCCCc----c-CCCCccEEEccCCccccc----Cccccc-CCCCCcEEeC
Q 004704          328 GNVPV----Q-LNNLERLRILDISENRLSGPIASS----L-NLSSVEHLSLQKNALNGL----IPGELF-RSCKLVTLNL  392 (735)
Q Consensus       328 ~~~~~----~-l~~l~~L~~L~L~~n~l~~~~~~~----~-~l~~L~~L~l~~n~l~~~----~~~~~~-~~~~L~~L~l  392 (735)
                      .....    . ......|+.+++++|.++......    . ..++|++|++++|.+.+.    ++..+. ..+.|++|++
T Consensus       297 ~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~L  376 (460)
T d1z7xw1         297 DEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWL  376 (460)
T ss_dssp             HHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred             ccccchhhccccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEEC
Confidence            32111    1 223467899999998887543222    1 567899999999988753    223333 4567999999


Q ss_pred             CCCccccc----CChhhhCCCCccEEEccCCcCCCCCchh----hh-cCCCCCEEECcCCcCCCCCC
Q 004704          393 RDNTFSGR----IPHQINEHSNLRFLLLGGNHLQGPIPDQ----LC-QLQKLAMMDLSRNKFSGSIP  450 (735)
Q Consensus       393 ~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~-~l~~L~~L~Ls~N~l~~~~p  450 (735)
                      ++|.++..    ++..+..+++|++|++++|+++......    +. +...|+.|++.+|.+.....
T Consensus       377 s~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~~~~  443 (460)
T d1z7xw1         377 ADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEME  443 (460)
T ss_dssp             TTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHH
T ss_pred             CCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCHHHH
Confidence            99999753    4455677899999999999987533322    22 33479999999998874433

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=1.8e-18  Score=168.90  Aligned_cols=219  Identities=13%  Similarity=0.072  Sum_probs=120.2

Q ss_pred             CEEeCCCCcCCCCcchhhhCCCCCCEEeCCCCcccccCChhhhhcCCCCCeeecccccccccccCCCCCCCCCeeEEEee
Q 004704           23 KILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLT  102 (735)
Q Consensus        23 ~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~  102 (735)
                      ++++.++..++ .+|+.+.  +++++|++++|+++ .+|..+|.++++|++|++++|.+...++..+|..+++++++.+.
T Consensus        11 ~~i~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~-~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~   86 (242)
T d1xwdc1          11 RVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   86 (242)
T ss_dssp             SEEEEESCSCS-SCCSCSC--SCCSEEEEESCCCC-EECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEE
T ss_pred             CEEEEeCCCCC-CcCCCCC--CCCCEEECcCCcCC-ccChhHhhccchhhhhhhccccccceeecccccccccccccccc
Confidence            34455554444 3443321  34555555555554 33334455555555555555555444444445555555555554


Q ss_pred             C-CCCCCCCchhhhCCCCCCEEEccCCcCcccCchHHHhCCCCCcEEECcCCcCcccCcCCcCCCC-CcCEEEccCCcCC
Q 004704          103 K-CNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHD-FLHHLDISCNNFR  180 (735)
Q Consensus       103 ~-n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~-~L~~L~Ls~n~l~  180 (735)
                      . +++....+..|.++++|+++++++|.+...-+......+..+..+...++.+..+.+..+..++ .++.|++++|+++
T Consensus        87 ~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~  166 (242)
T d1xwdc1          87 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ  166 (242)
T ss_dssp             CCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred             ccccccccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeeccccccc
Confidence            3 3455555556666666777777666665222222223344555555566666665555555543 5667777777776


Q ss_pred             CcCChhHHHhcccCcEE-ECcCCcCCCCCCcccCCCCCCCEEECCCccccCccchhhhhCCCCCCEEEc
Q 004704          181 GKLPHNMGVILQKLMYM-DISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDL  248 (735)
Q Consensus       181 ~~~~~~~~~~l~~L~~L-~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L  248 (735)
                       .++...+.. .+++++ ++++|.++...+..+.++++|++|++++|+++ .+|...+.+++.|+++++
T Consensus       167 -~i~~~~~~~-~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~-~l~~~~~~~l~~L~~l~~  232 (242)
T d1xwdc1         167 -EIHNCAFNG-TQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKLRARST  232 (242)
T ss_dssp             -EECTTTTTT-CCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCC-CCCSSSCTTCCEEESSSE
T ss_pred             -ccccccccc-hhhhccccccccccccccHHHhcCCCCCCEEECCCCcCC-ccCHHHHcCCcccccCcC
Confidence             556555553 344444 45666676333345677788888888888776 566655555555554444

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.73  E-value=1.9e-17  Score=159.63  Aligned_cols=203  Identities=18%  Similarity=0.305  Sum_probs=128.5

Q ss_pred             EEcCCCcCCCCCCccCCCCCCCCEEEcccCCCCccCCCccCCCCccEEEccCCcccccCcccccCCCCCcEEeCCCCccc
Q 004704          319 LSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFS  398 (735)
Q Consensus       319 L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~  398 (735)
                      ++++.+++++..  .+..+.+|+.|++.+|.++.. +....+++|++|++++|.+.+..|  +..+++++++++++|.++
T Consensus        24 ~~l~~~~~~d~~--~~~~l~~L~~L~l~~~~i~~l-~~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~   98 (227)
T d1h6ua2          24 IAAGKSNVTDTV--TQADLDGITTLSAFGTGVTTI-EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK   98 (227)
T ss_dssp             HHTTCSSTTSEE--CHHHHHTCCEEECTTSCCCCC-TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCS
T ss_pred             HHhCCCCcCCcC--CHHHcCCcCEEECCCCCCCcc-hhHhcCCCCcEeecCCceeecccc--cccccccccccccccccc
Confidence            344444444322  223345555555555555532 223355566666666665554322  566667777777777665


Q ss_pred             ccCChhhhCCCCccEEEccCCcCCCCCchhhhcCCCCCEEECcCCcCCCCCCchhhcccccccccCCccCCCCCCCcccc
Q 004704          399 GRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELD  478 (735)
Q Consensus       399 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~  478 (735)
                       .+ ..+..+++|+.++++++...+.  ..+...+.++.+.++++.+....+  +                         
T Consensus        99 -~i-~~l~~l~~L~~l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~--~-------------------------  147 (227)
T d1h6ua2          99 -NV-SAIAGLQSIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNISP--L-------------------------  147 (227)
T ss_dssp             -CC-GGGTTCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCCGG--G-------------------------
T ss_pred             -cc-cccccccccccccccccccccc--chhccccchhhhhchhhhhchhhh--h-------------------------
Confidence             22 2466677777777777766533  235556677777777766642211  1                         


Q ss_pred             hhhhcccCCCCCCCccccchhhhhhhhhhhhccccceeEEEEeccccccccCCcccccceEECCCCcccCCCCccccccc
Q 004704          479 EEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQ  558 (735)
Q Consensus       479 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~  558 (735)
                                                                          ...++|+.|++++|.+++.  ..+++++
T Consensus       148 ----------------------------------------------------~~~~~L~~L~l~~n~~~~~--~~l~~l~  173 (227)
T d1h6ua2         148 ----------------------------------------------------AGLTNLQYLSIGNAQVSDL--TPLANLS  173 (227)
T ss_dssp             ----------------------------------------------------GGCTTCCEEECCSSCCCCC--GGGTTCT
T ss_pred             ----------------------------------------------------ccccccccccccccccccc--hhhcccc
Confidence                                                                1125677788888887632  2378888


Q ss_pred             cCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccCCccccCCCCCCeEEccc
Q 004704          559 AILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSY  615 (735)
Q Consensus       559 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~  615 (735)
                      +|++|+|++|++++ +|. ++++++|++|+|++|++++ +| .+.++++|++|++++
T Consensus       174 ~L~~L~Ls~n~l~~-l~~-l~~l~~L~~L~Ls~N~lt~-i~-~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         174 KLTTLKADDNKISD-ISP-LASLPNLIEVHLKNNQISD-VS-PLANTSNLFIVTLTN  226 (227)
T ss_dssp             TCCEEECCSSCCCC-CGG-GGGCTTCCEEECTTSCCCB-CG-GGTTCTTCCEEEEEE
T ss_pred             cceecccCCCccCC-Chh-hcCCCCCCEEECcCCcCCC-Cc-ccccCCCCCEEEeeC
Confidence            99999999999885 443 8888999999999999885 44 378899999999874

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=4.7e-18  Score=165.96  Aligned_cols=213  Identities=15%  Similarity=0.107  Sum_probs=122.1

Q ss_pred             CCCCCCccccccCCCCCCCEEeCCCCcCCCCcchhhhCCCCCCEEeCCCCcccccCChhhhhcCCCCCeeeccccccccc
Q 004704            5 RNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLH   84 (735)
Q Consensus         5 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~   84 (735)
                      +.+++ .+|+.+.  +++++|||++|.|+...+.+|.++++|++|++++|.+.+.++..+|.++++++++.+..++....
T Consensus        17 ~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~   93 (242)
T d1xwdc1          17 ESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLY   93 (242)
T ss_dssp             SCSCS-SCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCE
T ss_pred             CCCCC-CcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccc
Confidence            34444 3444432  46677777777776544456677777777777777666555555666777777776665554555


Q ss_pred             ccCCCCCCCCCeeEEEeeCCCCCCCCch-hhhCCCCCCEEEccCCcCcccCchHHHhCC-CCCcEEECcCCcCcccCcCC
Q 004704           85 VKTENWLPTSQLIVLGLTKCNLNGSYPD-FLLHQYHLKYLDLSHNKLVGNFPTWLLRNN-PKLEVLLLKNNSFSGILQLP  162 (735)
Q Consensus        85 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l-~~L~~L~L~~n~l~~~~~~~  162 (735)
                      .+...|..+++|+++++++|++....+. .+..+..+..+..+++.+. .++...+..+ ..++.|++++|+++.+.+..
T Consensus        94 ~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~-~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~  172 (242)
T d1xwdc1          94 INPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIH-TIERNSFVGLSFESVILWLNKNGIQEIHNCA  172 (242)
T ss_dssp             ECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCC-EECTTSSTTSBSSCEEEECCSSCCCEECTTT
T ss_pred             cccccccccccccccccchhhhcccccccccccccccccccccccccc-cccccccccccccceeeeccccccccccccc
Confidence            5555566667777777777766543222 2334455555555555555 4443333333 35666777777776654444


Q ss_pred             cCCCCCcCE-EEccCCcCCCcCChhHHHhcccCcEEECcCCcCCCCCCcccCCCCCCCEEEC
Q 004704          163 KAKHDFLHH-LDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDL  223 (735)
Q Consensus       163 ~~~~~~L~~-L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L  223 (735)
                      +.. .++++ +++++|+++ .+|...+..+++|++|++++|+++...+..+.++++|+.+++
T Consensus       173 ~~~-~~l~~~~~l~~n~l~-~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~  232 (242)
T d1xwdc1         173 FNG-TQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST  232 (242)
T ss_dssp             TTT-CCEEEEECTTCTTCC-CCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSE
T ss_pred             ccc-hhhhccccccccccc-cccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcC
Confidence            433 33333 345556666 566666555677777777777766333334455554444443

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.72  E-value=5.8e-17  Score=156.19  Aligned_cols=200  Identities=22%  Similarity=0.282  Sum_probs=107.2

Q ss_pred             CCCCCCCCccccccCCCCCCCEEeCCCCcCCCCcchhhhCCCCCCEEeCCCCcccccCChhhhhcCCCCCeeeccccccc
Q 004704            3 LERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNT   82 (735)
Q Consensus         3 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~~~~~   82 (735)
                      ++.+.+++.+  .+..+.+|++|++++|.|+. + +.++++++|++|++++|++++..|   +.++++|+++++++|   
T Consensus        26 l~~~~~~d~~--~~~~l~~L~~L~l~~~~i~~-l-~~l~~l~~L~~L~ls~n~i~~~~~---l~~l~~l~~l~~~~n---   95 (227)
T d1h6ua2          26 AGKSNVTDTV--TQADLDGITTLSAFGTGVTT-I-EGVQYLNNLIGLELKDNQITDLAP---LKNLTKITELELSGN---   95 (227)
T ss_dssp             TTCSSTTSEE--CHHHHHTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCGG---GTTCCSCCEEECCSC---
T ss_pred             hCCCCcCCcC--CHHHcCCcCEEECCCCCCCc-c-hhHhcCCCCcEeecCCceeecccc---ccccccccccccccc---
Confidence            4444555432  34556666666666666663 3 246666666666666666654322   555555555555544   


Q ss_pred             ccccCCCCCCCCCeeEEEeeCCCCCCCCchhhhCCCCCCEEEccCCcCcccCchHHHhCCCCCcEEECcCCcCcccCcCC
Q 004704           83 LHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLP  162 (735)
Q Consensus        83 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~  162 (735)
                                            .++..  ..+.++++|++++++++...+ ++.  +...+.++.+.++.+.+....  .
T Consensus        96 ----------------------~~~~i--~~l~~l~~L~~l~l~~~~~~~-~~~--~~~~~~~~~l~~~~~~~~~~~--~  146 (227)
T d1h6ua2          96 ----------------------PLKNV--SAIAGLQSIKTLDLTSTQITD-VTP--LAGLSNLQVLYLDLNQITNIS--P  146 (227)
T ss_dssp             ----------------------CCSCC--GGGTTCTTCCEEECTTSCCCC-CGG--GTTCTTCCEEECCSSCCCCCG--G
T ss_pred             ----------------------ccccc--ccccccccccccccccccccc-cch--hccccchhhhhchhhhhchhh--h
Confidence                                  43321  234455555555555555542 221  124455555555555554432  2


Q ss_pred             cCCCCCcCEEEccCCcCCCcCChhHHHhcccCcEEECcCCcCCCCCCcccCCCCCCCEEECCCccccCccchhhhhCCCC
Q 004704          163 KAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFS  242 (735)
Q Consensus       163 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~  242 (735)
                      +..+++|++|++++|.+.+ .+ .+. .+++|++|++++|.+++ ++ .+.++++|++|++++|+++ .++.  +.++++
T Consensus       147 ~~~~~~L~~L~l~~n~~~~-~~-~l~-~l~~L~~L~Ls~n~l~~-l~-~l~~l~~L~~L~Ls~N~lt-~i~~--l~~l~~  218 (227)
T d1h6ua2         147 LAGLTNLQYLSIGNAQVSD-LT-PLA-NLSKLTTLKADDNKISD-IS-PLASLPNLIEVHLKNNQIS-DVSP--LANTSN  218 (227)
T ss_dssp             GGGCTTCCEEECCSSCCCC-CG-GGT-TCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECTTSCCC-BCGG--GTTCTT
T ss_pred             hcccccccccccccccccc-ch-hhc-ccccceecccCCCccCC-Ch-hhcCCCCCCEEECcCCcCC-CCcc--cccCCC
Confidence            4455556666666665542 11 122 25666666666666653 22 2556666666666666665 3432  456666


Q ss_pred             CCEEEcc
Q 004704          243 LELLDLS  249 (735)
Q Consensus       243 L~~L~L~  249 (735)
                      |++|+++
T Consensus       219 L~~L~ls  225 (227)
T d1h6ua2         219 LFIVTLT  225 (227)
T ss_dssp             CCEEEEE
T ss_pred             CCEEEee
Confidence            7776665

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.71  E-value=9.7e-18  Score=156.86  Aligned_cols=175  Identities=21%  Similarity=0.278  Sum_probs=99.4

Q ss_pred             CcEEeCCCCcccccCChhhhCCCCccEEEccCCcCCCC-CchhhhcCCCCCEEECcCCcCCCCCCchhhcccccccccCC
Q 004704          387 LVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGP-IPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDD  465 (735)
Q Consensus       387 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~  465 (735)
                      .++++.++++++ .+|..+.  +++++|+|++|+|++. .+..|.++++|+.|++++|++.+..+..+..          
T Consensus        10 ~~~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~----------   76 (192)
T d1w8aa_          10 GTTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEG----------   76 (192)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTT----------
T ss_pred             CCEEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeecccccccccccccccc----------
Confidence            345666676666 5555443  4667777777777643 3455666777777777777666554444332          


Q ss_pred             ccCCCCCCCcccchhhhcccCCCCCCCccccchhhhhhhhhhhhccccceeEEEEeccccccccCCcccccceEECCCCc
Q 004704          466 VLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQ  545 (735)
Q Consensus       466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~  545 (735)
                                                                                         +++|+.|+|++|+
T Consensus        77 -------------------------------------------------------------------~~~L~~L~Ls~N~   89 (192)
T d1w8aa_          77 -------------------------------------------------------------------ASHIQELQLGENK   89 (192)
T ss_dssp             -------------------------------------------------------------------CTTCCEEECCSCC
T ss_pred             -------------------------------------------------------------------ccccceeeecccc
Confidence                                                                               2445566666666


Q ss_pred             ccCCCCccccccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccCCccccCCCCCCeEEcccCcCcccCCCC
Q 004704          546 LTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPDK  625 (735)
Q Consensus       546 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~  625 (735)
                      +++..|..|.++++|++|+|++|+|++..|+.|..+++|++|+|++|.+....+.. .-...++.+.+..|.+++..|..
T Consensus        90 l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~-~~~~~l~~~~l~~~~~~c~~p~~  168 (192)
T d1w8aa_          90 IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLA-WFAEWLRKKSLNGGAARCGAPSK  168 (192)
T ss_dssp             CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGH-HHHHHHHHHCCSGGGCBBCSSTT
T ss_pred             ccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchH-HHhhhhhhhcccCCCeEeCCChh
Confidence            66555566666677777777777776666666666777777777776665332211 11122444455556665555532


Q ss_pred             CCCCccCCcccCCCCCCCC
Q 004704          626 GQFATFDESSYRGNPSLCA  644 (735)
Q Consensus       626 ~~~~~~~~~~~~gN~~lc~  644 (735)
                        +......++..|...|.
T Consensus       169 --l~~~~l~~L~~n~l~C~  185 (192)
T d1w8aa_         169 --VRDVQIKDLPHSEFKCS  185 (192)
T ss_dssp             --TTTSBGGGSCTTTCCCC
T ss_pred             --hcCCEeeecCHhhCcCC
Confidence              22222333444444453

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.69  E-value=2.5e-16  Score=149.34  Aligned_cols=164  Identities=21%  Similarity=0.349  Sum_probs=104.5

Q ss_pred             CCccEEEccCCcccccCcccccCCCCCcEEeCCCCcccccCChhhhCCCCccEEEccCCcCCCCCchhhhcCCCCCEEEC
Q 004704          361 SSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDL  440 (735)
Q Consensus       361 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  440 (735)
                      .+|+.|++++|.++...  .+..+++|++|++++|++++. + .++.+++|++|++++|++++ ++ .+..+++|+.|++
T Consensus        46 ~~L~~L~l~~~~i~~l~--~l~~l~~L~~L~L~~n~i~~l-~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l  119 (210)
T d1h6ta2          46 NSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDI-K-PLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSL  119 (210)
T ss_dssp             HTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEEC
T ss_pred             cCccEEECcCCCCCCch--hHhhCCCCCEEeCCCccccCc-c-ccccCccccccccccccccc-cc-ccccccccccccc
Confidence            34444444444444321  245566666666666666642 2 34566677777777777663 33 4666777777777


Q ss_pred             cCCcCCCCCCchhhcccccccccCCccCCCCCCCcccchhhhcccCCCCCCCccccchhhhhhhhhhhhccccceeEEEE
Q 004704          441 SRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFA  520 (735)
Q Consensus       441 s~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  520 (735)
                      ++|.+.. ++ .+.                                                                  
T Consensus       120 ~~~~~~~-~~-~l~------------------------------------------------------------------  131 (210)
T d1h6ta2         120 EHNGISD-IN-GLV------------------------------------------------------------------  131 (210)
T ss_dssp             TTSCCCC-CG-GGG------------------------------------------------------------------
T ss_pred             ccccccc-cc-ccc------------------------------------------------------------------
Confidence            7776542 11 111                                                                  


Q ss_pred             eccccccccCCcccccceEECCCCcccCCCCccccccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccCCc
Q 004704          521 MKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPP  600 (735)
Q Consensus       521 ~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~  600 (735)
                                 .++.++.+++++|.+++  +..+..+++|+.+++++|++++ ++. ++++++|++|||++|+++ .+| 
T Consensus       132 -----------~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~-i~~-l~~l~~L~~L~Ls~N~i~-~l~-  194 (210)
T d1h6ta2         132 -----------HLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISD-IVP-LAGLTKLQNLYLSKNHIS-DLR-  194 (210)
T ss_dssp             -----------GCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCC-BCG-
T ss_pred             -----------ccccccccccccccccc--cccccccccccccccccccccc-ccc-ccCCCCCCEEECCCCCCC-CCh-
Confidence                       12456667777777763  3346677888888888888875 332 788888888888888887 355 


Q ss_pred             cccCCCCCCeEEccc
Q 004704          601 QLTALNFLSIFNVSY  615 (735)
Q Consensus       601 ~l~~l~~L~~L~ls~  615 (735)
                      .+.++++|++|+|++
T Consensus       195 ~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         195 ALAGLKNLDVLELFS  209 (210)
T ss_dssp             GGTTCTTCSEEEEEE
T ss_pred             hhcCCCCCCEEEccC
Confidence            588888888888864

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.67  E-value=4.6e-16  Score=146.16  Aligned_cols=161  Identities=22%  Similarity=0.299  Sum_probs=82.9

Q ss_pred             CCCCCCCCccccccCCCCCCCEEeCCCCcCCCCcchhhhCCCCCCEEeCCCCcccccCChhhhhcCCCCCeeeccccccc
Q 004704            3 LERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNT   82 (735)
Q Consensus         3 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~~~~~   82 (735)
                      ++.+.+++.++  ...++++++|++++|.++. + +.++.+++|++|++++|++++..|   ++++++|++|++++|...
T Consensus        25 l~~~~~~~~~~--~~~l~~l~~L~l~~~~i~~-l-~~l~~l~nL~~L~Ls~N~l~~~~~---l~~l~~L~~L~l~~n~~~   97 (199)
T d2omxa2          25 LGKTNVTDTVS--QTDLDQVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLTDITP---LKNLTKLVDILMNNNQIA   97 (199)
T ss_dssp             TTCSSTTSEEC--HHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCC
T ss_pred             hCCCCCCCccC--HHHhcCCCEEECCCCCCCC-c-cccccCCCcCcCccccccccCccc---ccCCcccccccccccccc
Confidence            45555555432  3456777788888887774 3 346777788888888887765322   666666776666665442


Q ss_pred             ccccCCCCCCCCCeeEEEeeCCCCCCCCchhhhCCCCCCEEEccCCcCcccCchHHHhCCCCCcEEECcCCcCcccCcCC
Q 004704           83 LHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLP  162 (735)
Q Consensus        83 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~  162 (735)
                      ...   .+..+++|+.|++++|.+...  ..+.++++|+.|++++|++. .++.  +..+++|+.|++.+|++++..  .
T Consensus        98 ~~~---~l~~l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~-~~~~--l~~~~~L~~L~l~~n~l~~l~--~  167 (199)
T d2omxa2          98 DIT---PLANLTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTIS-DISA--LSGLTSLQQLNFSSNQVTDLK--P  167 (199)
T ss_dssp             CCG---GGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCC-CCGG--GTTCTTCSEEECCSSCCCCCG--G
T ss_pred             ccc---ccccccccccccccccccccc--cccchhhhhHHhhhhhhhhc-cccc--ccccccccccccccccccCCc--c
Confidence            211   133444555555554444422  22444444555555555443 2321  124444444444444444331  2


Q ss_pred             cCCCCCcCEEEccCCcCC
Q 004704          163 KAKHDFLHHLDISCNNFR  180 (735)
Q Consensus       163 ~~~~~~L~~L~Ls~n~l~  180 (735)
                      +..+++|++|++++|+++
T Consensus       168 l~~l~~L~~L~ls~N~i~  185 (199)
T d2omxa2         168 LANLTTLERLDISSNKVS  185 (199)
T ss_dssp             GTTCTTCCEEECCSSCCC
T ss_pred             ccCCCCCCEEECCCCCCC
Confidence            334444444444444433

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.66  E-value=4.7e-16  Score=147.40  Aligned_cols=164  Identities=22%  Similarity=0.260  Sum_probs=96.6

Q ss_pred             CCCCEEeCCCCcccccCChhhhhcCCCCCeeecccccccccccCCCCCCCCCeeEEEeeCCCCCCCCchhhhCCCCCCEE
Q 004704           44 TSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYL  123 (735)
Q Consensus        44 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  123 (735)
                      .+|++|++++|.+++. +  .+..+++|++|++++|.+....   .+..+++|++|++++|++++ ++ .+..+++|+.|
T Consensus        46 ~~L~~L~l~~~~i~~l-~--~l~~l~~L~~L~L~~n~i~~l~---~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L  117 (210)
T d1h6ta2          46 NSIDQIIANNSDIKSV-Q--GIQYLPNVTKLFLNGNKLTDIK---PLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSL  117 (210)
T ss_dssp             HTCCEEECTTSCCCCC-T--TGGGCTTCCEEECCSSCCCCCG---GGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEE
T ss_pred             cCccEEECcCCCCCCc-h--hHhhCCCCCEEeCCCccccCcc---ccccCccccccccccccccc-cc-ccccccccccc
Confidence            3444445544444421 1  2444445555555444433211   12345566666666666653 22 46667777777


Q ss_pred             EccCCcCcccCchHHHhCCCCCcEEECcCCcCcccCcCCcCCCCCcCEEEccCCcCCCcCChhHHHhcccCcEEECcCCc
Q 004704          124 DLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNC  203 (735)
Q Consensus       124 ~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~  203 (735)
                      ++++|.+. .++.  +..++.++.+++++|.+++.  ..+..+++|+++++++|+++ .++. +. .+++|++|++++|.
T Consensus       118 ~l~~~~~~-~~~~--l~~l~~l~~l~~~~n~l~~~--~~~~~l~~L~~l~l~~n~l~-~i~~-l~-~l~~L~~L~Ls~N~  189 (210)
T d1h6ta2         118 SLEHNGIS-DING--LVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS-DIVP-LA-GLTKLQNLYLSKNH  189 (210)
T ss_dssp             ECTTSCCC-CCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCC-CCGG-GT-TCTTCCEEECCSSC
T ss_pred             cccccccc-cccc--cccccccccccccccccccc--cccccccccccccccccccc-cccc-cc-CCCCCCEEECCCCC
Confidence            77777765 4442  23667777777777777654  23556677777777777776 3432 33 36778888888887


Q ss_pred             CCCCCCcccCCCCCCCEEECCC
Q 004704          204 FEGNIPYSAGEMKELSLLDLSR  225 (735)
Q Consensus       204 l~~~~~~~l~~l~~L~~L~L~~  225 (735)
                      ++ .++ .+..+++|++|+|++
T Consensus       190 i~-~l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         190 IS-DLR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             CC-BCG-GGTTCTTCSEEEEEE
T ss_pred             CC-CCh-hhcCCCCCCEEEccC
Confidence            76 344 477788888888753

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.66  E-value=8.3e-16  Score=144.40  Aligned_cols=160  Identities=24%  Similarity=0.402  Sum_probs=94.6

Q ss_pred             CCccEEEccCCcccccCcccccCCCCCcEEeCCCCcccccCChhhhCCCCccEEEccCCcCCCCCchhhhcCCCCCEEEC
Q 004704          361 SSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDL  440 (735)
Q Consensus       361 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  440 (735)
                      ++++.|++++|.+...  +.+..+++|++|++++|++++..  .++.+++|++|++++|.+.. ++ .+.+++.|+.|++
T Consensus        40 ~~l~~L~l~~~~i~~l--~~l~~l~nL~~L~Ls~N~l~~~~--~l~~l~~L~~L~l~~n~~~~-~~-~l~~l~~L~~L~l  113 (199)
T d2omxa2          40 DQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIAD-IT-PLANLTNLTGLTL  113 (199)
T ss_dssp             TTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSEEEC
T ss_pred             cCCCEEECCCCCCCCc--cccccCCCcCcCccccccccCcc--cccCCccccccccccccccc-cc-ccccccccccccc
Confidence            3444444444444322  12455666666666666666432  26666667777777666653 33 3666677777777


Q ss_pred             cCCcCCCCCCchhhcccccccccCCccCCCCCCCcccchhhhcccCCCCCCCccccchhhhhhhhhhhhccccceeEEEE
Q 004704          441 SRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFA  520 (735)
Q Consensus       441 s~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  520 (735)
                      ++|.+....+  +                                                                   
T Consensus       114 ~~~~~~~~~~--~-------------------------------------------------------------------  124 (199)
T d2omxa2         114 FNNQITDIDP--L-------------------------------------------------------------------  124 (199)
T ss_dssp             CSSCCCCCGG--G-------------------------------------------------------------------
T ss_pred             cccccccccc--c-------------------------------------------------------------------
Confidence            7666542110  1                                                                   


Q ss_pred             eccccccccCCcccccceEECCCCcccCCCCccccccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccCCc
Q 004704          521 MKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPP  600 (735)
Q Consensus       521 ~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~  600 (735)
                                ..+++|+.|++++|++. .+| .+..+++|+.|++++|++++. + .++++++|++||+++|++++ +| 
T Consensus       125 ----------~~l~~L~~L~l~~n~l~-~~~-~l~~~~~L~~L~l~~n~l~~l-~-~l~~l~~L~~L~ls~N~i~~-i~-  188 (199)
T d2omxa2         125 ----------KNLTNLNRLELSSNTIS-DIS-ALSGLTSLQQLNFSSNQVTDL-K-PLANLTTLERLDISSNKVSD-IS-  188 (199)
T ss_dssp             ----------TTCTTCSEEECCSSCCC-CCG-GGTTCTTCSEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCC-CG-
T ss_pred             ----------chhhhhHHhhhhhhhhc-ccc-cccccccccccccccccccCC-c-cccCCCCCCEEECCCCCCCC-Cc-
Confidence                      11345666777777765 233 466777777777777777743 2 27777777777777777774 43 


Q ss_pred             cccCCCCCCeE
Q 004704          601 QLTALNFLSIF  611 (735)
Q Consensus       601 ~l~~l~~L~~L  611 (735)
                      .++++++|+.|
T Consensus       189 ~l~~L~~L~~L  199 (199)
T d2omxa2         189 VLAKLTNLESL  199 (199)
T ss_dssp             GGGGCTTCSEE
T ss_pred             cccCCCCCCcC
Confidence            46677777654

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=2.4e-16  Score=156.98  Aligned_cols=213  Identities=19%  Similarity=0.206  Sum_probs=122.2

Q ss_pred             CCCEEEccCCcCcccCchHHHhCCCCCcEEECcCCcCcccCcCCcCCCCCcCEEEccCC-cCCCcCChhHHHhcccCcEE
Q 004704          119 HLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCN-NFRGKLPHNMGVILQKLMYM  197 (735)
Q Consensus       119 ~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~~~~~l~~L~~L  197 (735)
                      +|++||++++.+++.....++.++++|++|++++|.+++.....+..+++|++|+++++ .+++..-..+...+++|++|
T Consensus        47 ~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L  126 (284)
T d2astb2          47 RVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDEL  126 (284)
T ss_dssp             CCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEE
T ss_pred             CCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhcccc
Confidence            45555555555443333334445555555555555554444444455556666666653 33322222233446677777


Q ss_pred             ECcCCc-CCCC-CCcccC-CCCCCCEEECCCc--cccCccchhhhhCCCCCCEEEccCC-CCCCcCcccccCCCCCCEEE
Q 004704          198 DISKNC-FEGN-IPYSAG-EMKELSLLDLSRN--YFSGGLSQSVVTGCFSLELLDLSNN-NFEGQFFSEYMNLTRLRHLY  271 (735)
Q Consensus       198 ~L~~n~-l~~~-~~~~l~-~l~~L~~L~L~~n--~l~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~  271 (735)
                      ++++|. ++.. +...+. ..++|+.|+++++  .++......+...+++|++|++++| .+++.....+..+++|++|+
T Consensus       127 ~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~  206 (284)
T d2astb2         127 NLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLS  206 (284)
T ss_dssp             ECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEE
T ss_pred             ccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEE
Confidence            777653 2211 111122 2467788888764  2333323344567888999999886 46766777788888999999


Q ss_pred             cccc-ccCccccccccCCCCCCEEEeeCCccCCCCCchhhhhcccCcEEEcCCCcCCCCCCccCC
Q 004704          272 FENN-NFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLN  335 (735)
Q Consensus       272 L~~n-~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~  335 (735)
                      +++| .+++.....++.+++|++|+++++ ++..   .+..+...+..|.+..++++...+..++
T Consensus       207 L~~C~~i~~~~l~~L~~~~~L~~L~l~~~-~~d~---~l~~l~~~lp~L~i~~~~ls~~~~~~~~  267 (284)
T d2astb2         207 LSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDG---TLQLLKEALPHLQINCSHFTTIARPTIG  267 (284)
T ss_dssp             CTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTT---CHHHHHHHSTTSEESCCCSCCTTCSSCS
T ss_pred             CCCCCCCChHHHHHHhcCCCCCEEeeeCC-CCHH---HHHHHHHhCccccccCccCCCCCCCccC
Confidence            9885 566666666778889999998887 3322   2222222245556666677655555444

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.64  E-value=2.8e-16  Score=146.72  Aligned_cols=173  Identities=17%  Similarity=0.250  Sum_probs=130.0

Q ss_pred             cCEEEccCCcCCCcCChhHHHhcccCcEEECcCCcCCCCC-CcccCCCCCCCEEECCCccccCccchhhhhCCCCCCEEE
Q 004704          169 LHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNI-PYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLD  247 (735)
Q Consensus       169 L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~  247 (735)
                      .++++.++++++ .+|..+.   +++++|+|++|.+++.+ +..|..+++|++|++++|.+. .++...+..+++|++|+
T Consensus        10 ~~~v~Cs~~~L~-~iP~~lp---~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~-~~~~~~~~~~~~L~~L~   84 (192)
T d1w8aa_          10 GTTVDCTGRGLK-EIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQ   84 (192)
T ss_dssp             TTEEECTTSCCS-SCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEE
T ss_pred             CCEEEEeCCCcC-ccCCCCC---CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccc-cccccccccccccceee
Confidence            457788888887 7887663   57888888888887534 556778888999999888887 45556667788999999


Q ss_pred             ccCCCCCCcCcccccCCCCCCEEEccccccCccccccccCCCCCCEEEeeCCccCCCCCchhhhhcccCcEEEcCCCcCC
Q 004704          248 LSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLE  327 (735)
Q Consensus       248 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~  327 (735)
                      +++|++....+.+|.++++|++|+|++|++++..+++|..+++|++|++++|.+.......  .+...++.+.+..+.++
T Consensus        85 Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~--~~~~~l~~~~l~~~~~~  162 (192)
T d1w8aa_          85 LGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLA--WFAEWLRKKSLNGGAAR  162 (192)
T ss_dssp             CCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGH--HHHHHHHHHCCSGGGCB
T ss_pred             eccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchH--HHhhhhhhhcccCCCeE
Confidence            9999998888888899999999999999998777888888999999999999887443221  11222666667777777


Q ss_pred             CCCCccCCCCCCCCEEEcccCCCC
Q 004704          328 GNVPVQLNNLERLRILDISENRLS  351 (735)
Q Consensus       328 ~~~~~~l~~l~~L~~L~L~~n~l~  351 (735)
                      ...|..+   ..++.++++.|.+.
T Consensus       163 c~~p~~l---~~~~l~~L~~n~l~  183 (192)
T d1w8aa_         163 CGAPSKV---RDVQIKDLPHSEFK  183 (192)
T ss_dssp             BCSSTTT---TTSBGGGSCTTTCC
T ss_pred             eCCChhh---cCCEeeecCHhhCc
Confidence            6566544   44556667776664

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=1.4e-16  Score=158.67  Aligned_cols=200  Identities=16%  Similarity=0.130  Sum_probs=93.4

Q ss_pred             CEEeCCCCcCCCCcchhhhCCCCCCEEeCCCCcccccCChhhhhcCCCCCeeecccccccccccCCCCCCCCCeeEEEee
Q 004704           23 KILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLT  102 (735)
Q Consensus        23 ~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~  102 (735)
                      ++|||+++.+.......+.. .....+.++.........  ......+|++|+++++.+........+..+++|++|+|+
T Consensus         3 ~~lDLs~~~l~~~~l~~l~~-~~~~~lrl~~~~~~~~~~--~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~   79 (284)
T d2astb2           3 QTLDLTGKNLHPDVTGRLLS-QGVIAFRCPRSFMDQPLA--EHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE   79 (284)
T ss_dssp             SEEECTTCBCCHHHHHHHHH-TTCSEEECTTCEECSCCC--SCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECT
T ss_pred             CEEECCCCCCCchHHHHHHh-ccceEeeccccccccchh--hhccCCCCCEEECCCCccCHHHHHHHHHhCCCccccccc
Confidence            35667666554322222211 234555555544332111  122334556666655544333222234455666666666


Q ss_pred             CCCCCCCCchhhhCCCCCCEEEccCC-cCcccCchHHHhCCCCCcEEECcCCc-Cccc-CcCCc-CCCCCcCEEEccCCc
Q 004704          103 KCNLNGSYPDFLLHQYHLKYLDLSHN-KLVGNFPTWLLRNNPKLEVLLLKNNS-FSGI-LQLPK-AKHDFLHHLDISCNN  178 (735)
Q Consensus       103 ~n~l~~~~~~~l~~l~~L~~L~Ls~n-~l~~~~p~~~~~~l~~L~~L~L~~n~-l~~~-~~~~~-~~~~~L~~L~Ls~n~  178 (735)
                      +|.+++..+..+.++++|++|+++++ .+++..-..+.+.+++|++|++++|. ++.. ....+ ..+++|+.|+++++.
T Consensus        80 ~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~  159 (284)
T d2astb2          80 GLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR  159 (284)
T ss_dssp             TCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCG
T ss_pred             ccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhcccc
Confidence            66666555666666666777777664 34422222333456666666666642 3211 01111 123456666665432


Q ss_pred             --CCCcCChhHHHhcccCcEEECcCCc-CCCCCCcccCCCCCCCEEECCC
Q 004704          179 --FRGKLPHNMGVILQKLMYMDISKNC-FEGNIPYSAGEMKELSLLDLSR  225 (735)
Q Consensus       179 --l~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~L~~  225 (735)
                        +++.....+...+++|++|++++|. +++.....+.++++|++|++++
T Consensus       160 ~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~  209 (284)
T d2astb2         160 KNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSR  209 (284)
T ss_dssp             GGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTT
T ss_pred             cccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCC
Confidence              2222222233334555555555542 3333334444445555555544

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=3.6e-14  Score=127.46  Aligned_cols=42  Identities=19%  Similarity=0.306  Sum_probs=31.2

Q ss_pred             ccCCCCCCCEEeCCCCcCCCCcchhhhCCCCCCEEeCCCCccc
Q 004704           15 CLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFE   57 (735)
Q Consensus        15 ~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~   57 (735)
                      .|.++..+++|||++|+|+. ++..+..+++|++|||++|+++
T Consensus        13 ~~~n~~~lr~L~L~~n~I~~-i~~~~~~l~~L~~L~Ls~N~i~   54 (162)
T d1a9na_          13 QYTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIR   54 (162)
T ss_dssp             EEECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCC
T ss_pred             hccCcCcCcEEECCCCCCCc-cCccccccccCCEEECCCCCCC
Confidence            46677778888888888873 4566677788888888888776

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.45  E-value=2e-13  Score=116.27  Aligned_cols=81  Identities=30%  Similarity=0.428  Sum_probs=35.6

Q ss_pred             cceEECCCCcccCCCCccccccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccC-CccccCCCCCCeEEcc
Q 004704          536 VTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQI-PPQLTALNFLSIFNVS  614 (735)
Q Consensus       536 L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~-p~~l~~l~~L~~L~ls  614 (735)
                      |++||+++|+++ .+|+.++.+++|++|++++|.|++ +| .++.+++|++|++++|+++... +..+..+++|++|+++
T Consensus        22 L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L~~L~l~   98 (124)
T d1dcea3          22 VTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQ   98 (124)
T ss_dssp             CCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECT
T ss_pred             CCEEECCCCccC-cchhhhhhhhcccccccccccccc-cC-ccccccccCeEECCCCccCCCCCchhhcCCCCCCEEECC
Confidence            334444444444 334444444444444444444442 22 2444444444444444444221 1234444444444444


Q ss_pred             cCcCc
Q 004704          615 YNNLS  619 (735)
Q Consensus       615 ~N~l~  619 (735)
                      +|+++
T Consensus        99 ~N~i~  103 (124)
T d1dcea3          99 GNSLC  103 (124)
T ss_dssp             TSGGG
T ss_pred             CCcCC
Confidence            44444

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.45  E-value=2.1e-14  Score=147.59  Aligned_cols=137  Identities=17%  Similarity=0.135  Sum_probs=83.3

Q ss_pred             CCCcCEEEccCCcCCCcCChhHH---HhcccCcEEECcCCcCCCC-----CCcccCCCCCCCEEECCCccccCccch---
Q 004704          166 HDFLHHLDISCNNFRGKLPHNMG---VILQKLMYMDISKNCFEGN-----IPYSAGEMKELSLLDLSRNYFSGGLSQ---  234 (735)
Q Consensus       166 ~~~L~~L~Ls~n~l~~~~~~~~~---~~l~~L~~L~L~~n~l~~~-----~~~~l~~l~~L~~L~L~~n~l~~~~~~---  234 (735)
                      .+.|+.+++++|.+.......+.   ..++.|++|++++|.+...     +...+..+++|+.|++++|.++.....   
T Consensus       157 ~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~  236 (344)
T d2ca6a1         157 APPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALA  236 (344)
T ss_dssp             CCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHH
T ss_pred             Ccccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhccccccccccccccccccc
Confidence            34556666666655422222211   2245677777777766431     233456677888888888877532111   


Q ss_pred             hhhhCCCCCCEEEccCCCCCCcCcc----ccc--CCCCCCEEEccccccCcc----cccccc-CCCCCCEEEeeCCccC
Q 004704          235 SVVTGCFSLELLDLSNNNFEGQFFS----EYM--NLTRLRHLYFENNNFSGK----IKDGLL-SSTSLQVLDISNNMLS  302 (735)
Q Consensus       235 ~~~~~l~~L~~L~L~~n~l~~~~~~----~~~--~l~~L~~L~L~~n~l~~~----~~~~l~-~~~~L~~L~l~~n~l~  302 (735)
                      ..+..+++|++|++++|.+++....    .+.  ..+.|++|++++|.++..    +...+. +.++|++|++++|++.
T Consensus       237 ~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~  315 (344)
T d2ca6a1         237 IALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS  315 (344)
T ss_dssp             HHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             ccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCC
Confidence            2235677888888888888753222    222  246788999999887643    223332 4678999999999987

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.44  E-value=3.7e-14  Score=145.60  Aligned_cols=248  Identities=21%  Similarity=0.202  Sum_probs=139.4

Q ss_pred             ccccCCCCCCCEEeCCCCcCCCC----cchhhhCCCCCCEEeCCCCccccc---CChhhhhcCCCCCeeecccccccccc
Q 004704           13 ITCLKNLTRLKILDISSNQLNGS----LPSVISNLTSLEYLDLSHNNFEGM---FPLSSLANHSKLEGLLLSTRNNTLHV   85 (735)
Q Consensus        13 ~~~~~~l~~L~~L~Ls~n~i~~~----~p~~~~~l~~L~~L~Ls~n~l~~~---~~~~~~~~l~~L~~L~L~~~~~~~~~   85 (735)
                      ..++.+.+.|++|+|++|.+...    +...+...++|+.|+++++.....   .+. .+..                  
T Consensus        24 ~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~-~~~~------------------   84 (344)
T d2ca6a1          24 FAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPE-ALRL------------------   84 (344)
T ss_dssp             SHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHH-HHHH------------------
T ss_pred             HHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccch-HHHH------------------
Confidence            34455566677777777766532    222344556677777666543211   110 0000                  


Q ss_pred             cCCCCCCCCCeeEEEeeCCCCCCC----CchhhhCCCCCCEEEccCCcCcccCchH------------HHhCCCCCcEEE
Q 004704           86 KTENWLPTSQLIVLGLTKCNLNGS----YPDFLLHQYHLKYLDLSHNKLVGNFPTW------------LLRNNPKLEVLL  149 (735)
Q Consensus        86 ~~~~~~~~~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~~p~~------------~~~~l~~L~~L~  149 (735)
                      -..++..+++|++|+|++|.+...    +...+..+++|++|++++|.+.......            .....+.|+.+.
T Consensus        85 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~  164 (344)
T d2ca6a1          85 LLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSII  164 (344)
T ss_dssp             HHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEE
T ss_pred             HHHHHhhCCCcccccccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceee
Confidence            000123445666666666666543    3334456677777777777664211111            123456777788


Q ss_pred             CcCCcCcccC----cCCcCCCCCcCEEEccCCcCCCcCC----hhHHHhcccCcEEECcCCcCCCC----CCcccCCCCC
Q 004704          150 LKNNSFSGIL----QLPKAKHDFLHHLDISCNNFRGKLP----HNMGVILQKLMYMDISKNCFEGN----IPYSAGEMKE  217 (735)
Q Consensus       150 L~~n~l~~~~----~~~~~~~~~L~~L~Ls~n~l~~~~~----~~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~  217 (735)
                      +++|.++...    ...+..++.|++|++++|.+.....    ......+++|+.|++++|.++..    +...+..+++
T Consensus       165 l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~  244 (344)
T d2ca6a1         165 CGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPN  244 (344)
T ss_dssp             CCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTT
T ss_pred             cccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhccccccccccccccccccccccccccc
Confidence            7777765322    2223456677888888877653211    11122356788888888876532    3345667788


Q ss_pred             CCEEECCCccccCccchhhh---h--CCCCCCEEEccCCCCCCcC----cccc-cCCCCCCEEEccccccCc
Q 004704          218 LSLLDLSRNYFSGGLSQSVV---T--GCFSLELLDLSNNNFEGQF----FSEY-MNLTRLRHLYFENNNFSG  279 (735)
Q Consensus       218 L~~L~L~~n~l~~~~~~~~~---~--~l~~L~~L~L~~n~l~~~~----~~~~-~~l~~L~~L~L~~n~l~~  279 (735)
                      |++|++++|.+++.....+.   .  ....|++|++++|.++...    ...+ .++++|+.|++++|.+..
T Consensus       245 L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         245 LRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             CCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             chhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence            88888888887643222222   1  2356888888888876422    2223 256788888888888763

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.43  E-value=4.5e-13  Score=114.08  Aligned_cols=117  Identities=26%  Similarity=0.297  Sum_probs=64.8

Q ss_pred             CcCCCCCCCCccccccCCCCCCCEEeCCCCcCCCCcchhhhCCCCCCEEeCCCCcccccCChhhhhcCCCCCeeeccccc
Q 004704            1 MNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRN   80 (735)
Q Consensus         1 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~~~   80 (735)
                      |||++|+|+. ++ .+.++++|++|++++|.++ .+|+.|+.+++|++|++++|+|++ +|  .                
T Consensus         3 L~Ls~n~l~~-l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l~--~----------------   60 (124)
T d1dcea3           3 LHLAHKDLTV-LC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD--G----------------   60 (124)
T ss_dssp             EECTTSCCSS-CC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG--G----------------
T ss_pred             EEcCCCCCCC-Cc-ccccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccc-cC--c----------------
Confidence            3555555552 22 3555555555555555555 344455555555555555555542 22  1                


Q ss_pred             ccccccCCCCCCCCCeeEEEeeCCCCCCCC-chhhhCCCCCCEEEccCCcCcc--cCchHHHhCCCCCcEE
Q 004704           81 NTLHVKTENWLPTSQLIVLGLTKCNLNGSY-PDFLLHQYHLKYLDLSHNKLVG--NFPTWLLRNNPKLEVL  148 (735)
Q Consensus        81 ~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~Ls~n~l~~--~~p~~~~~~l~~L~~L  148 (735)
                               +..+++|++|++++|+++... ...+..+++|++|++++|.+++  ..+..+...+|+|+.+
T Consensus        61 ---------~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          61 ---------VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             ---------GTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             ---------cccccccCeEECCCCccCCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence                     344455556666666665432 2457777888888888887763  2334455556766654

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=2.2e-13  Score=122.24  Aligned_cols=127  Identities=16%  Similarity=0.158  Sum_probs=83.5

Q ss_pred             hhCCCCCCEEEccCCcCcccCchHHHhCCCCCcEEECcCCcCcccCcCCcCCCCCcCEEEccCCcCCCcCChhHHHhccc
Q 004704          114 LLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQK  193 (735)
Q Consensus       114 l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~  193 (735)
                      +.+..++++|||++|+|+ .++. ++..+++|++|++++|.++.+  ..+..+++|++|++++|+++ .++..++..+++
T Consensus        14 ~~n~~~lr~L~L~~n~I~-~i~~-~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~-~l~~~~~~~l~~   88 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPD   88 (162)
T ss_dssp             EECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCC-EECSCHHHHCTT
T ss_pred             ccCcCcCcEEECCCCCCC-ccCc-cccccccCCEEECCCCCCCcc--CCcccCcchhhhhccccccc-CCCccccccccc
Confidence            345556677777777766 5553 334666777777777777655  24667777888888888877 566666655778


Q ss_pred             CcEEECcCCcCCCCCC--cccCCCCCCCEEECCCccccCccch---hhhhCCCCCCEEE
Q 004704          194 LMYMDISKNCFEGNIP--YSAGEMKELSLLDLSRNYFSGGLSQ---SVVTGCFSLELLD  247 (735)
Q Consensus       194 L~~L~L~~n~l~~~~~--~~l~~l~~L~~L~L~~n~l~~~~~~---~~~~~l~~L~~L~  247 (735)
                      |+.|++++|.+.. ++  ..+..+++|++|++++|.++ ..+.   ..+..+++|++||
T Consensus        89 L~~L~L~~N~i~~-~~~l~~l~~l~~L~~L~l~~N~i~-~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          89 LTELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             CCEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEET
T ss_pred             cccceeccccccc-cccccccccccccchhhcCCCccc-cccchHHHHHHHCCCcCeeC
Confidence            8888888887763 32  35667777888888887775 3332   2345566676665

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=2.9e-13  Score=120.54  Aligned_cols=112  Identities=20%  Similarity=0.207  Sum_probs=97.3

Q ss_pred             ccceEECCCCcccCCCCccccccccCCeEeCCCC-cCcccCcccccCcCCCCEEeCCCCcccccCCccccCCCCCCeEEc
Q 004704          535 RVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNN-SLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNV  613 (735)
Q Consensus       535 ~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~l  613 (735)
                      ..+.++++++++. .+|..+..+++|++|++++| .++...+..|.++++|+.|+|++|+|++..|.+|..+++|++|+|
T Consensus         9 ~~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L   87 (156)
T d2ifga3           9 GSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL   87 (156)
T ss_dssp             SSSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred             CCCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceec
Confidence            3456999999998 78888999999999999876 599777888999999999999999999888999999999999999


Q ss_pred             ccCcCcccCCCCCCCCccCCcccCCCCCCCCccc
Q 004704          614 SYNNLSGRTPDKGQFATFDESSYRGNPSLCAWLI  647 (735)
Q Consensus       614 s~N~l~~~~p~~~~~~~~~~~~~~gN~~lc~~~~  647 (735)
                      ++|+|+...+..-+...+....+.|||+-|+|.+
T Consensus        88 s~N~l~~l~~~~~~~~~l~~L~L~~Np~~C~C~~  121 (156)
T d2ifga3          88 SFNALESLSWKTVQGLSLQELVLSGNPLHCSCAL  121 (156)
T ss_dssp             CSSCCSCCCSTTTCSCCCCEEECCSSCCCCCGGG
T ss_pred             cCCCCcccChhhhccccccccccCCCcccCCchH
Confidence            9999997666554445677788999999998765

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.31  E-value=9.5e-14  Score=129.32  Aligned_cols=143  Identities=21%  Similarity=0.292  Sum_probs=96.4

Q ss_pred             CcEEeCCCC--cccccCChhhhCCCCccEEEccCCcCCCCCchhhhcCCCCCEEECcCCcCCCCCCchhhcccccccccC
Q 004704          387 LVTLNLRDN--TFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSD  464 (735)
Q Consensus       387 L~~L~l~~n--~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~  464 (735)
                      ++.+++.+.  .+. .++..+..+++|++|+|++|+++. ++ .+..+++|+.|++++|+++ .+|..+..         
T Consensus        25 ~~~~~l~~~~~~i~-~l~~sl~~L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~---------   91 (198)
T d1m9la_          25 AEKVELHGMIPPIE-KMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAV---------   91 (198)
T ss_dssp             CSCEECCBCCTTCC-CCHHHHHHTTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEEC-SCSSHHHH---------
T ss_pred             cceeeeecccCchh-hhhhHHhcccccceeECcccCCCC-cc-cccCCccccChhhcccccc-cccccccc---------
Confidence            444555443  232 455677778888888888888874 44 4778888888888888876 33322211         


Q ss_pred             CccCCCCCCCcccchhhhcccCCCCCCCccccchhhhhhhhhhhhccccceeEEEEeccccccccCCcccccceEECCCC
Q 004704          465 DVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCN  544 (735)
Q Consensus       465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N  544 (735)
                                                                                          ++.|+.|++++|
T Consensus        92 --------------------------------------------------------------------~~~L~~L~l~~N  103 (198)
T d1m9la_          92 --------------------------------------------------------------------ADTLEELWISYN  103 (198)
T ss_dssp             --------------------------------------------------------------------HHHCCEEECSEE
T ss_pred             --------------------------------------------------------------------cccccccccccc
Confidence                                                                                145677888888


Q ss_pred             cccCCCCccccccccCCeEeCCCCcCcccCc-ccccCcCCCCEEeCCCCcccccCCcc----------ccCCCCCCeEE
Q 004704          545 QLTGEIPSDIGQLQAILALNLSNNSLSGSIP-ESFSNLKMIESLDISYNKLTGQIPPQ----------LTALNFLSIFN  612 (735)
Q Consensus       545 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~LdLs~N~l~~~~p~~----------l~~l~~L~~L~  612 (735)
                      +++. + +.+..+++|+.|++++|+++.... ..++.+++|+.|+|++|++....+..          +..+++|+.||
T Consensus       104 ~i~~-l-~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         104 QIAS-L-SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             ECCC-H-HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             cccc-c-ccccccccccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            8873 3 347778888888888888874322 45788888888888888887554432          45677777775

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.14  E-value=1.7e-12  Score=120.61  Aligned_cols=43  Identities=26%  Similarity=0.233  Sum_probs=19.9

Q ss_pred             chhhhCCCCCCEEEccCCcCcccCchHHHhCCCCCcEEECcCCcCc
Q 004704          111 PDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFS  156 (735)
Q Consensus       111 ~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~  156 (735)
                      +..+..+++|++|+|++|+|+ .++.  +..+++|++|++++|.++
T Consensus        41 ~~sl~~L~~L~~L~Ls~n~I~-~i~~--l~~l~~L~~L~Ls~N~i~   83 (198)
T d1m9la_          41 DATLSTLKACKHLALSTNNIE-KISS--LSGMENLRILSLGRNLIK   83 (198)
T ss_dssp             HHHHHHTTTCCEEECSEEEES-CCCC--HHHHTTCCEEECCEEEEC
T ss_pred             hhHHhcccccceeECcccCCC-Cccc--ccCCccccChhhcccccc
Confidence            344555555555555555554 3332  124444444444444443

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=2.1e-10  Score=101.69  Aligned_cols=106  Identities=16%  Similarity=0.083  Sum_probs=78.1

Q ss_pred             CcEEECcCCcCCCCCCcccCCCCCCCEEECCCcc-ccCccchhhhhCCCCCCEEEccCCCCCCcCcccccCCCCCCEEEc
Q 004704          194 LMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNY-FSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYF  272 (735)
Q Consensus       194 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  272 (735)
                      .+.++.+++.+. ..|..+..+++|++|++++|+ ++ .++...|.++++|+.|++++|+++...+.+|..+++|++|+|
T Consensus        10 ~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L   87 (156)
T d2ifga3          10 SSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQ-HLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL   87 (156)
T ss_dssp             SSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCC-EECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred             CCeEEecCCCCc-cCcccccCccccCeeecCCCcccc-ccCchhhccccccCcceeeccccCCcccccccccccccceec
Confidence            445666666665 456667777888888887664 55 677777778888888888888888777788888888888888


Q ss_pred             cccccCccccccccCCCCCCEEEeeCCccC
Q 004704          273 ENNNFSGKIKDGLLSSTSLQVLDISNNMLS  302 (735)
Q Consensus       273 ~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~  302 (735)
                      ++|+++. +|........|+.|++++|.+.
T Consensus        88 s~N~l~~-l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          88 SFNALES-LSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             CSSCCSC-CCSTTTCSCCCCEEECCSSCCC
T ss_pred             cCCCCcc-cChhhhccccccccccCCCccc
Confidence            8888884 4443334457888888888875

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.11  E-value=2.7e-07  Score=81.71  Aligned_cols=80  Identities=23%  Similarity=0.174  Sum_probs=57.1

Q ss_pred             ccccceEECCCCcccCC--CCccccccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccCCcc-------cc
Q 004704          533 VNRVTGLDLSCNQLTGE--IPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQ-------LT  603 (735)
Q Consensus       533 l~~L~~LdLs~N~l~~~--~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~-------l~  603 (735)
                      ++.|+.|||++|+++..  ++..+..+++|+.|+|++|.|+...+-.+.....|+.|++++|.++......       +.
T Consensus        64 ~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~  143 (162)
T d1koha1          64 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRE  143 (162)
T ss_dssp             CTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHHT
T ss_pred             CCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHHH
Confidence            57788888888888743  2345677888888888888888544434445567888888888887655432       55


Q ss_pred             CCCCCCeEE
Q 004704          604 ALNFLSIFN  612 (735)
Q Consensus       604 ~l~~L~~L~  612 (735)
                      .+|+|+.||
T Consensus       144 ~~P~L~~LD  152 (162)
T d1koha1         144 RFPKLLRLD  152 (162)
T ss_dssp             TSTTCCEET
T ss_pred             HCCCCCEEC
Confidence            678888775

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.07  E-value=1e-07  Score=84.46  Aligned_cols=81  Identities=26%  Similarity=0.268  Sum_probs=43.7

Q ss_pred             CCCCccEEEccCCcccccC--cccccCCCCCcEEeCCCCcccccCChhhhCCCCccEEEccCCcCCCCCch-------hh
Q 004704          359 NLSSVEHLSLQKNALNGLI--PGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPD-------QL  429 (735)
Q Consensus       359 ~l~~L~~L~l~~n~l~~~~--~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-------~~  429 (735)
                      .+++|++|++++|+++...  +..+..+++|+.|++++|.|+...+-.......|+.|++++|++......       .+
T Consensus        63 ~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~  142 (162)
T d1koha1          63 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIR  142 (162)
T ss_dssp             HCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHH
T ss_pred             hCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHH
Confidence            3555666666666555432  23345566666666666666633332333344566666666666544321       24


Q ss_pred             hcCCCCCEEE
Q 004704          430 CQLQKLAMMD  439 (735)
Q Consensus       430 ~~l~~L~~L~  439 (735)
                      ..+|+|+.||
T Consensus       143 ~~~P~L~~LD  152 (162)
T d1koha1         143 ERFPKLLRLD  152 (162)
T ss_dssp             TTSTTCCEET
T ss_pred             HHCCCCCEEC
Confidence            4566666664

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.82  E-value=6.7e-06  Score=72.80  Aligned_cols=66  Identities=17%  Similarity=0.178  Sum_probs=41.5

Q ss_pred             CCCCCCCEEeCCCC-cCCCC----cchhhhCCCCCCEEeCCCCccccc--CC-hhhhhcCCCCCeeeccccccc
Q 004704           17 KNLTRLKILDISSN-QLNGS----LPSVISNLTSLEYLDLSHNNFEGM--FP-LSSLANHSKLEGLLLSTRNNT   82 (735)
Q Consensus        17 ~~l~~L~~L~Ls~n-~i~~~----~p~~~~~l~~L~~L~Ls~n~l~~~--~~-~~~~~~l~~L~~L~L~~~~~~   82 (735)
                      .+.++|++|+|+++ .++..    +-.++...+.|++|+|++|.+...  .. ...+...+.|++|++++|.+.
T Consensus        12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~   85 (167)
T d1pgva_          12 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT   85 (167)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred             hCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcc
Confidence            45688999999874 46532    334567778899999998887532  11 123445555666666655443

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.48  E-value=4.2e-05  Score=67.43  Aligned_cols=85  Identities=13%  Similarity=0.073  Sum_probs=51.5

Q ss_pred             CCCccEEEccCCccccc----CcccccCCCCCcEEeCCCCccccc----CChhhhCCCCccEEEccCCcCCCC-------
Q 004704          360 LSSVEHLSLQKNALNGL----IPGELFRSCKLVTLNLRDNTFSGR----IPHQINEHSNLRFLLLGGNHLQGP-------  424 (735)
Q Consensus       360 l~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~-------  424 (735)
                      .+.|+.|++++|.+...    +...+...+.|+.|++++|.++..    +...+...++|++|++++|.+...       
T Consensus        43 n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~  122 (167)
T d1pgva_          43 SKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMD  122 (167)
T ss_dssp             CSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHH
T ss_pred             CCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHH
Confidence            34455555555544422    123344566777788877777643    223455667788888888765532       


Q ss_pred             CchhhhcCCCCCEEECcCCc
Q 004704          425 IPDQLCQLQKLAMMDLSRNK  444 (735)
Q Consensus       425 ~~~~~~~l~~L~~L~Ls~N~  444 (735)
                      +...+...+.|+.|+++.+.
T Consensus       123 l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_         123 MMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             HHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHHhCCCccEeeCcCCC
Confidence            34455667888888887654

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.09  E-value=0.00013  Score=64.26  Aligned_cols=69  Identities=9%  Similarity=0.054  Sum_probs=43.5

Q ss_pred             ccccCCCCCCCEEeCCC-CcCCCC----cchhhhCCCCCCEEeCCCCcccccCC---hhhhhcCCCCCeeecccccc
Q 004704           13 ITCLKNLTRLKILDISS-NQLNGS----LPSVISNLTSLEYLDLSHNNFEGMFP---LSSLANHSKLEGLLLSTRNN   81 (735)
Q Consensus        13 ~~~~~~l~~L~~L~Ls~-n~i~~~----~p~~~~~l~~L~~L~Ls~n~l~~~~~---~~~~~~l~~L~~L~L~~~~~   81 (735)
                      .....+.+.|++|+|++ +.++..    +-.++...++|++|++++|.++....   ...+...+.++.++++++..
T Consensus        10 ~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~   86 (166)
T d1io0a_          10 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFI   86 (166)
T ss_dssp             HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCC
T ss_pred             HHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccc
Confidence            34455678999999987 456532    33455678889999999988754321   12344555666666555443

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.63  E-value=0.00059  Score=59.71  Aligned_cols=13  Identities=15%  Similarity=0.232  Sum_probs=7.4

Q ss_pred             hCCCCCCEEEccC
Q 004704          115 LHQYHLKYLDLSH  127 (735)
Q Consensus       115 ~~l~~L~~L~Ls~  127 (735)
                      .+.+.|++|++++
T Consensus        14 ~~~~~L~~L~L~~   26 (166)
T d1io0a_          14 NNDPDLEEVNLNN   26 (166)
T ss_dssp             TTCTTCCEEECTT
T ss_pred             hcCCCCcEEEcCC
Confidence            3455666666655