Citrus Sinensis ID: 004725

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730---
MSAPKKRTFQIEAFKHRVVVDPKYAEKTWKILEHAIHEIYNHNASGLSFEELYRNAYNMVLHKFGEKLYSGLVTTMTFHLTEICKSIEAAQGGLFLEELNRKWADHNKALQMIRDILMYMDRTFIPSTHKTPVHELGLNLWRDVVIHSSKIQTRLQDTLLELVQRERSGEVINRGLMRNITKMLMDLGSFVYQDDFEKHFLEVSADFYRLESQEFIESCDCGDYLKKAERRLNEEMERVSHYLDARSEAKITNVVEKEMIESHMNRLVHMENSGLVNMLVDDKYEDLGRMYCLFRRVPSGLILIRDVMTSYIRDTGKQLVSDPERLKDPVDFVQRLLDLKDKYDKVINSAFNNDKTFQNALNSSFEYFINLNSRSPEFISLFVDDKLRKGLRGVSEEDVENVLDKVMMLFRFLQEKDVFEKYYKQHLAKRLLSGKTVSDDAERSLIVKLKTECGYQFTSKLEGMFTDMKTSQDTMQGFYASLGAESGDSPTLTVQVLTTGSWPTQPSATCNLPAEIMGICEKFRSYYLGTHTGRRLTWQTNMGTADLKGTFGKGQKHELNVSTYQMCVLMLFNSIDRLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRKEPMSKDIAEDDAFFFNDKFTSKFVKVKIGTVVAQRESEPENQETRQRVEEDRKPQIEAAIVRIMKARRVLDHNNIVTEVTKQLQSRFLPNPVVIKKRIESLIEREFLERDKVDRKLYRYLA
cccccccccEEccccccccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHEEccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHccHHHHHHHHHHHcccccccccEEEEEEccccccccccccccccHHHHHHHHHHHHHHHHcccccEEEEEcccccEEEEEEEccccEEEEEEcHHHHHHHHHHcccccccHHHHHHHccccHHHHHHHHHHHHHcccccEEEcccccccccccccEEEcccccccccEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccccccccccccEEEcc
ccccccccEEEEcccccccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHcccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccHHEcccHccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEEcccccccccccccccHHHHHHHHHHHHHHHHcccccEEEEEcccccEEEEEEccccccEEEEEEHHHHHHHHHHcccccccHHHHHHHccccHHHHHHHHHHHHHHHHHHHEcccccccccccccEEEEcccccccEEEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccccEEEcc
msapkkrtfQIEAFKhrvvvdpkyAEKTWKILEHAIHEIynhnasglsfEELYRNAYNMVLHKFGEKLYSGLVTTMTFHLTEICKSIEAAQGGLFLEELNRKWADHNKALQMIRDILMYMdrtfipsthktpvhelglNLWRDVVIHSSKIQTRLQDTLLELVQRERSGEVINRGLMRNITKMLMDLGSFVYQDDFEKHFLEVSADFyrlesqefiescdcgdYLKKAERRLNEEMERVSHYLDARSEAKITNVVEKEMIESHMNRLVHMENSGLVNMLVDDKYEDLGRMYClfrrvpsglILIRDVMTSYIRDtgkqlvsdperlkdpVDFVQRLLDLKDKYDKVINSAFNNDKTFQNALNSSFEYFINlnsrspefiSLFVDDKLrkglrgvseeDVENVLDKVMMLFRFLQEKDVFEKYYKQHLAKRLlsgktvsddAERSLIVKLKtecgyqftsklegmftdmktsQDTMQGFYASlgaesgdsptlTVQVLTtgswptqpsatcnlpaEIMGICEKFRSYYlgthtgrrltwqtnmgtadlkgtfgkgqkhelNVSTYQMCVLMLFNSidrlsykeieqateipapeLKRCLQSLacvkgkhvlrkepmskdiaeddafffndkftsKFVKVKIGTVvaqresepenqeTRQRVEEDRKPQIEAAIVRIMKARRVLDHNNIVTEVTKQLqsrflpnpVVIKKRIESLIEREFLERDKVDRKLYRYLA
msapkkrtfqieafkhrvvvdpKYAEKTWKILEHAIHEIYNHNASGLSFEELYRNAYNMVLHKFGEKLYSGLVTTMTFHLTEICKSIEAAQGGLFLEELNRKWADHNKALQMIRDILMYMDRTFIPSTHKTPVHELGLNLWRDVVIHSSKIQTRLQDTLLElvqrersgevinrglMRNITKMLMDLGSFVYQDDFEKHFLEVSADFYRLESQefiescdcgdYLKKAERRLNEEMERvshyldarseakitNVVEKEMIESHMNRLVHMENSGLVNMLVDDKYEDLGRMYCLFrrvpsglilIRDVMTSYIRDTgkqlvsdperlkdpVDFVQRLLDLKDKYDKVINSAFNNDKTFQNALNSSFEYFINLNSRSPEFISLFVDDKLRKGlrgvseedvenVLDKVMMLFRFLQEKDVFEKYYKQHLAkrllsgktvsddAERSLIVKlktecgyqftSKLEGMFTDMKTSQDTMQGFYASLGAESGDSPTLTVQVLTTGSWPTQPSATCNLPAEIMGICEKFRSYYLGTHTGRRLTWQTNMGTADLKGTFGKGQKHELNVSTYQMCVLMLFNSIDRLSYKEIEQATEIPAPELKRCLQSLACVKgkhvlrkepmskdiAEDDAFFFNDKFTSKFVKVKIGtvvaqresepenqetrqrveedrkpqiEAAIVRIMKARRVLDHNNIVTEvtkqlqsrflpnpvvIKKRIesliereflerdkvdrklyryla
MSAPKKRTFQIEAFKHRVVVDPKYAEKTWKILEHAIHEIYNHNASGLSFEELYRNAYNMVLHKFGEKLYSGLVTTMTFHLTEICKSIEAAQGGLFLEELNRKWADHNKALQMIRDILMYMDRTFIPSTHKTPVHELGLNLWRDVVIHSSKIQTRLQDTLLELVQRERSGEVINRGLMRNITKMLMDLGSFVYQDDFEKHFLEVSADFYRLESQEFIESCDCGDYLKKAERRLNEEMERVSHYLDARSEAKITNVVEKEMIESHMNRLVHMENSGLVNMLVDDKYEDLGRMYCLFRRVPSGLILIRDVMTSYIRDTGKQLVSDPERLKDPVDFVQRLLDLKDKYDKVINSAFNNDKTFQNALNSSFEYFINLNSRSPEFISLFVDDKLRKGLRGVSEEDVENVLDKVMMLFRFLQEKDVFEKYYKQHLAKRLLSGKTVSDDAERSLIVKLKTECGYQFTSKLEGMFTDMKTSQDTMQGFYASLGAESGDSPTLTVQVLTTGSWPTQPSATCNLPAEIMGICEKFRSYYLGTHTGRRLTWQTNMGTADLKGTFGKGQKHELNVSTYQMCVLMLFNSIDRLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRKEPMSKDIAEDDAFFFNDKFTSKFVKVKIGTVVAQRESEPENQETRQRVEEDRKPQIEAAIVRIMKARRVLDHNNIVTEVTKQLQSRFLPNPVVIKKRIESLIEREFLERDKVDRKLYRYLA
********FQIEAFKHRVVVDPKYAEKTWKILEHAIHEIYNHNASGLSFEELYRNAYNMVLHKFGEKLYSGLVTTMTFHLTEICKSIEAAQGGLFLEELNRKWADHNKALQMIRDILMYMDRTFIPSTHKTPVHELGLNLWRDVVIHSSKIQTRLQDTLLELVQRERSGEVINRGLMRNITKMLMDLGSFVYQDDFEKHFLEVSADFYRLESQEFIESCDCGDYLKKAE*********VSHYLDAR*EAKITNVVEKEMIESHMNRLVHMENSGLVNMLVDDKYEDLGRMYCLFRRVPSGLILIRDVMTSYIRDTGKQLVSDPERLKDPVDFVQRLLDLKDKYDKVINSAFNNDKTFQNALNSSFEYFINLNSRSPEFISLFVDDKLRKGLRGVSEEDVENVLDKVMMLFRFLQEKDVFEKYYKQHLAKRLLSGKTVSDDAERSLIVKLKTECGYQFTSKLEGMFTDM********GFYASL********TLTVQVLTTGSWPTQPSATCNLPAEIMGICEKFRSYYLGTHTGRRLTWQTNMGTADLKGTFGKGQKHELNVSTYQMCVLMLFNSIDRLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRKEPMSKDIAEDDAFFFNDKFTSKFVKVKIGTVVA***********************EAAIVRIMKARRVLDHNNIVTEVTKQLQSRFLPNPVVIKKRIESLIEREFLERDKVDRKLYR***
******R**************PKYAEKTWKILEHAIHEIYNHNASGLSFEELYRNAYNMVLHKFGEKLYSGLVTTMTFHLTEICKSIEAAQGGLFLEELNRKWADHNKALQMIRDILMYMDRTFIPSTHKTPVHELGLNLWRDVVIHSSKIQTRLQDTLLELVQRERSGEVINRGLMRNITKMLMDLGSFVYQDDFEKHFLEVSADFYRLESQEFIESCDCGDYLKKAERRLNEEMERVSHYLDARSEAKITNVVEKEMIESHMNRLVHMENSGLVNMLVDDKYEDLGRMYCLFRRVPSGLILIRDVMTSYIRDTGKQLVSDPERLKDPVDFVQRLLDLKDKYDKVINSAFNNDKTFQNALNSSFEYFINLNSRSPEFISLFVDDK**************NVLDKVMMLFRFLQEKDVFEKYYKQHLAKRLLSGKTVSDDAERSLIVKLKTECGYQFTSKLEGMFTDMKTSQDTMQGFYASLGAESGDSPTLTVQVLTTGSWPTQPSATCNLPAEIMGICEKFRSYYLGTHTGRRLTWQTNMGTADLKGTFGKGQKHELNVSTYQMCVLMLFNSIDRLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRKEP**KDIAEDDAFFFNDKFTSKFVKVKI**********************DRKPQIEAAIVRIMKARRVLDHNNIVTEVTKQLQSRFLPNPVVIKKRIESLIEREFLERDKVDRKLYRYLA
MSAPKKRTFQIEAFKHRVVVDPKYAEKTWKILEHAIHEIYNHNASGLSFEELYRNAYNMVLHKFGEKLYSGLVTTMTFHLTEICKSIEAAQGGLFLEELNRKWADHNKALQMIRDILMYMDRTFIPSTHKTPVHELGLNLWRDVVIHSSKIQTRLQDTLLELVQRERSGEVINRGLMRNITKMLMDLGSFVYQDDFEKHFLEVSADFYRLESQEFIESCDCGDYLKKAERRLNEEMERVSHYLDARSEAKITNVVEKEMIESHMNRLVHMENSGLVNMLVDDKYEDLGRMYCLFRRVPSGLILIRDVMTSYIRDTGKQLVSDPERLKDPVDFVQRLLDLKDKYDKVINSAFNNDKTFQNALNSSFEYFINLNSRSPEFISLFVDDKLRKGLRGVSEEDVENVLDKVMMLFRFLQEKDVFEKYYKQHLAKRLLSGKTVSDDAERSLIVKLKTECGYQFTSKLEGMFTDMKTSQDTMQGFYASLGAESGDSPTLTVQVLTTGSWPTQPSATCNLPAEIMGICEKFRSYYLGTHTGRRLTWQTNMGTADLKGTFGKGQKHELNVSTYQMCVLMLFNSIDRLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRKEPMSKDIAEDDAFFFNDKFTSKFVKVKIGTVVA******************RKPQIEAAIVRIMKARRVLDHNNIVTEVTKQLQSRFLPNPVVIKKRIESLIEREFLERDKVDRKLYRYLA
*****KRTFQIEAFKHRVVVDPKYAEKTWKILEHAIHEIYNHNASGLSFEELYRNAYNMVLHKFGEKLYSGLVTTMTFHLTEICKSIEAAQGGLFLEELNRKWADHNKALQMIRDILMYMDRTFIPSTHKTPVHELGLNLWRDVVIHSSKIQTRLQDTLLELVQRERSGEVINRGLMRNITKMLMDLGSFVYQDDFEKHFLEVSADFYRLESQEFIESCDCGDYLKKAERRLNEEMERVSHYLDARSEAKITNVVEKEMIESHMNRLVHMENSGLVNMLVDDKYEDLGRMYCLFRRVPSGLILIRDVMTSYIRDTGKQLVSDPERLKDPVDFVQRLLDLKDKYDKVINSAFNNDKTFQNALNSSFEYFINLNSRSPEFISLFVDDKLRKGLRGVSEEDVENVLDKVMMLFRFLQEKDVFEKYYKQHLAKRLLSGKTVSDDAERSLIVKLKTECGYQFTSKLEGMFTDMKTSQDTMQGFYASLGAESGDSPTLTVQVLTTGSWPTQPSATCNLPAEIMGICEKFRSYYLGTHTGRRLTWQTNMGTADLKGTFGKGQKHELNVSTYQMCVLMLFNSIDRLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRKEPMSKDIAEDDAFFFNDKFTSKFVKVKIGTVVAQRESEPENQETRQRVEEDRKPQIEAAIVRIMKARRVLDHNNIVTEVTKQLQSRFLPNPVVIKKRIESLIEREFLERDKVDRKLYRYLA
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MSAPKKRTFQIEAFKHRVVVDPKYAEKTWKILEHAIHEIYNHNASGLSFEELYRNAYNMVLHKFGEKLYSGLVTTMTFHLTEICKSIEAAQGGLFLEELNRKWADHNKALQMIRDILMYMDRTFIPSTHKTPVHELGLNLWRDVVIHSSKIQTRLQDTLLELVQRERSGEVINRGLMRNITKMLMDLGSFVYQDDFEKHFLEVSADFYRLESQEFIESCDCGDYxxxxxxxxxxxxxxxxxxxxxRSEAKITNVVEKEMIESHMNRLVHMENSGLVNMLVDDKYEDLGRMYCLFRRVPSGLILIRDVMTSYIRDTGKQLVSDPERLKDPVDFVQRLLDLKDKYDKVINSAFNNDKTFQNALNSSFEYFINLNSRSPEFISLFVDDKLRKGLRGVSEEDVENVLDKVMMLFRFLQEKDVFEKYYKQHLAKRLLSGKTVSDDAERSLIVKLKTECGYQFTSKLEGMFTDMKTSQDTMQGFYASLGAESGDSPTLTVQVLTTGSWPTQPSATCNLPAEIMGICEKFRSYYLGTHTGRRLTWQTNMGTADLKGTFGKGQKHELNVSTYQMCVLMLFNSIDRLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRKEPMSKDIAEDDAFFFNDKFTSKFVKVKIGTVVAQRESEPENQETRQRVEEDRKPQIEAAIVRIMKARRVLDHNNIVTEVTKQLQSRFLPNPVVIKKRIESLIEREFLERDKVDRKLYRYLA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query733 2.2.26 [Sep-21-2011]
Q9C9L0732 Cullin-3B OS=Arabidopsis yes no 0.998 1.0 0.810 0.0
Q9ZVH4732 Cullin-3A OS=Arabidopsis no no 0.998 1.0 0.802 0.0
Q54NZ5769 Cullin-3 OS=Dictyostelium yes no 0.975 0.929 0.538 0.0
Q13618768 Cullin-3 OS=Homo sapiens yes no 0.990 0.945 0.531 0.0
B5DF89768 Cullin-3 OS=Rattus norveg yes no 0.990 0.945 0.530 0.0
Q9JLV5768 Cullin-3 OS=Mus musculus yes no 0.990 0.945 0.528 0.0
Q6DE95768 Cullin-3-A OS=Xenopus lae N/A no 0.989 0.944 0.528 0.0
Q6GPF3768 Cullin-3-B OS=Xenopus lae N/A no 0.989 0.944 0.526 0.0
A4IHP4768 Cullin-3 OS=Xenopus tropi yes no 0.989 0.944 0.526 0.0
Q17391777 Cullin-3 OS=Caenorhabditi yes no 0.976 0.921 0.436 1e-172
>sp|Q9C9L0|CUL3B_ARATH Cullin-3B OS=Arabidopsis thaliana GN=CUL3B PE=1 SV=1 Back     alignment and function desciption
 Score = 1256 bits (3249), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 594/733 (81%), Positives = 665/733 (90%), Gaps = 1/733 (0%)

Query: 1   MSAPKKRTFQIEAFKHRVVVDPKYAEKTWKILEHAIHEIYNHNASGLSFEELYRNAYNMV 60
           MS  KKR FQIEAFK RVVVDPKYA+KTWKILEHAIHEIYNHNASGLSFEELYRNAYNMV
Sbjct: 1   MSNQKKRNFQIEAFKQRVVVDPKYADKTWKILEHAIHEIYNHNASGLSFEELYRNAYNMV 60

Query: 61  LHKFGEKLYSGLVTTMTFHLTEICKSIEAAQGGLFLEELNRKWADHNKALQMIRDILMYM 120
           LHK+G+KLY+GLVTTMTFHL EICKSIE AQGG FLE LNRKW DHNKALQMIRDILMYM
Sbjct: 61  LHKYGDKLYTGLVTTMTFHLKEICKSIEEAQGGAFLELLNRKWNDHNKALQMIRDILMYM 120

Query: 121 DRTFIPSTHKTPVHELGLNLWRDVVIHSSKIQTRLQDTLLELVQRERSGEVINRGLMRNI 180
           DRT++ +T KT VHELGL+LWRD V++SSKIQTRL +TLL+LV +ER+GEVI+R LMRN+
Sbjct: 121 DRTYVSTTKKTHVHELGLHLWRDNVVYSSKIQTRLLNTLLDLVHKERTGEVIDRVLMRNV 180

Query: 181 TKMLMDLGSFVYQDDFEKHFLEVSADFYRLESQEFIESCDCGDYLKKAERRLNEEMERVS 240
            KM MDLG  VYQDDFEK FLE SA+FY++ES EFIESCDCG+YLKKAE+ L EE+ERV 
Sbjct: 181 IKMFMDLGESVYQDDFEKPFLEASAEFYKVESMEFIESCDCGEYLKKAEKPLVEEVERVV 240

Query: 241 HYLDARSEAKITNVVEKEMIESHMNRLVHMENSGLVNMLVDDKYEDLGRMYCLFRRVPSG 300
           +YLDA+SEAKIT+VVE+EMI +H+ RLVHMENSGLVNML++DKYED+GRMY LFRRV +G
Sbjct: 241 NYLDAKSEAKITSVVEREMIANHVQRLVHMENSGLVNMLLNDKYEDMGRMYSLFRRVANG 300

Query: 301 LILIRDVMTSYIRDTGKQLVSDPERLKDPVDFVQRLLDLKDKYDKVINSAFNNDKTFQNA 360
           L+ +RDVMT ++R+ GKQLV+DPE+ KDPV+FVQRLLD +DKYD++IN AFNNDKTFQNA
Sbjct: 301 LVTVRDVMTLHLREMGKQLVTDPEKSKDPVEFVQRLLDERDKYDRIINMAFNNDKTFQNA 360

Query: 361 LNSSFEYFINLNSRSPEFISLFVDDKLRKGLRGVSEEDVENVLDKVMMLFRFLQEKDVFE 420
           LNSSFEYF+NLN+RSPEFISLFVDDKLRKGL+GV EEDV+ +LDKVMMLFR+LQEKDVFE
Sbjct: 361 LNSSFEYFVNLNTRSPEFISLFVDDKLRKGLKGVGEEDVDLILDKVMMLFRYLQEKDVFE 420

Query: 421 KYYKQHLAKRLLSGKTVSDDAERSLIVKLKTECGYQFTSKLEGMFTDMKTSQDTMQGFYA 480
           KYYKQHLAKRLLSGKTVSDDAER+LIVKLKTECGYQFTSKLEGMFTDMKTS DT+ GFY 
Sbjct: 421 KYYKQHLAKRLLSGKTVSDDAERNLIVKLKTECGYQFTSKLEGMFTDMKTSHDTLLGFYN 480

Query: 481 SLGAESGDSPTLTVQVLTTGSWPTQPSATCNLPAEIMGICEKFRSYYLGTHTGRRLTWQT 540
           S   E  + PTL VQVLTTGSWPTQP+  CNLPAE+  +CEKFRSYYLGTHTGRRL+WQT
Sbjct: 481 S-HPELSEGPTLVVQVLTTGSWPTQPTIQCNLPAEVSVLCEKFRSYYLGTHTGRRLSWQT 539

Query: 541 NMGTADLKGTFGKGQKHELNVSTYQMCVLMLFNSIDRLSYKEIEQATEIPAPELKRCLQS 600
           NMGTAD+K  FGKGQKHELNVST+QMCVLMLFN+ DRLSYKEIEQATEIP P+LKRCLQS
Sbjct: 540 NMGTADIKAVFGKGQKHELNVSTFQMCVLMLFNNSDRLSYKEIEQATEIPTPDLKRCLQS 599

Query: 601 LACVKGKHVLRKEPMSKDIAEDDAFFFNDKFTSKFVKVKIGTVVAQRESEPENQETRQRV 660
           +ACVKGK+VLRKEPMSK+IAE+D F  ND+F SKF KVKIGTVVAQ+E+EPE QETRQRV
Sbjct: 600 MACVKGKNVLRKEPMSKEIAEEDWFVVNDRFASKFYKVKIGTVVAQKETEPEKQETRQRV 659

Query: 661 EEDRKPQIEAAIVRIMKARRVLDHNNIVTEVTKQLQSRFLPNPVVIKKRIESLIEREFLE 720
           EEDRKPQIEAAIVRIMK+RRVLDHNNI+ EVTKQLQ+RFL NP  IKKRIESLIER+FLE
Sbjct: 660 EEDRKPQIEAAIVRIMKSRRVLDHNNIIAEVTKQLQTRFLANPTEIKKRIESLIERDFLE 719

Query: 721 RDKVDRKLYRYLA 733
           RD  DRKLYRYLA
Sbjct: 720 RDNTDRKLYRYLA 732
Component of the cullin-RING ubiquitin ligases (CRL), or CUL3-RBX1-BTB protein E3 ligase complexes which mediate the ubiquitination and subsequent proteasomal degradation of target proteins. The functional specificity of the CRL complex depends on the BTB domain-containing protein as the susbstrate recognition component. Involved in embryo pattern formation and endosperm development. Required for the normal division and organization of the root stem cells and columella root cap cells. Regulates primary root growth by an unknown pathway, but in an ethylene-dependent manner. Functions in distal root patterning, by an ethylene-independent mechanism. Functionally redundant with CUL3A.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9ZVH4|CUL3A_ARATH Cullin-3A OS=Arabidopsis thaliana GN=CUL3A PE=1 SV=1 Back     alignment and function description
>sp|Q54NZ5|CUL3_DICDI Cullin-3 OS=Dictyostelium discoideum GN=culC PE=3 SV=1 Back     alignment and function description
>sp|Q13618|CUL3_HUMAN Cullin-3 OS=Homo sapiens GN=CUL3 PE=1 SV=2 Back     alignment and function description
>sp|B5DF89|CUL3_RAT Cullin-3 OS=Rattus norvegicus GN=Cul3 PE=1 SV=2 Back     alignment and function description
>sp|Q9JLV5|CUL3_MOUSE Cullin-3 OS=Mus musculus GN=Cul3 PE=1 SV=1 Back     alignment and function description
>sp|Q6DE95|CUL3A_XENLA Cullin-3-A OS=Xenopus laevis GN=cul3a PE=1 SV=1 Back     alignment and function description
>sp|Q6GPF3|CUL3B_XENLA Cullin-3-B OS=Xenopus laevis GN=cul3b PE=1 SV=1 Back     alignment and function description
>sp|A4IHP4|CUL3_XENTR Cullin-3 OS=Xenopus tropicalis GN=cul3 PE=2 SV=1 Back     alignment and function description
>sp|Q17391|CUL3_CAEEL Cullin-3 OS=Caenorhabditis elegans GN=cul-3 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query733
225452781733 PREDICTED: cullin-3B [Vitis vinifera] gi 1.0 1.0 0.908 0.0
449459468733 PREDICTED: cullin-3A-like [Cucumis sativ 1.0 1.0 0.911 0.0
224111260733 predicted protein [Populus trichocarpa] 0.998 0.998 0.869 0.0
356550799733 PREDICTED: cullin-3A-like [Glycine max] 1.0 1.0 0.873 0.0
356572514733 PREDICTED: cullin-3A-like [Glycine max] 1.0 1.0 0.871 0.0
224099735732 predicted protein [Populus trichocarpa] 0.998 1.0 0.859 0.0
225425720733 PREDICTED: cullin-3A [Vitis vinifera] 1.0 1.0 0.866 0.0
242062528736 hypothetical protein SORBIDRAFT_04g02797 0.998 0.994 0.834 0.0
357138137736 PREDICTED: cullin-3A-like [Brachypodium 0.998 0.994 0.830 0.0
413938863736 hypothetical protein ZEAMMB73_078676 [Ze 0.998 0.994 0.831 0.0
>gi|225452781|ref|XP_002283300.1| PREDICTED: cullin-3B [Vitis vinifera] gi|147833364|emb|CAN72935.1| hypothetical protein VITISV_020617 [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1399 bits (3622), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 666/733 (90%), Positives = 700/733 (95%)

Query: 1   MSAPKKRTFQIEAFKHRVVVDPKYAEKTWKILEHAIHEIYNHNASGLSFEELYRNAYNMV 60
           MS  KKR FQIEAFKHRVVVDPKYAEKTWKILEHAIHEIYNHNASGLSFEELYRNAYNMV
Sbjct: 1   MSTQKKRNFQIEAFKHRVVVDPKYAEKTWKILEHAIHEIYNHNASGLSFEELYRNAYNMV 60

Query: 61  LHKFGEKLYSGLVTTMTFHLTEICKSIEAAQGGLFLEELNRKWADHNKALQMIRDILMYM 120
           LHKFGEKLYSGLVTTMT HL  I KSIEAAQGGLFLEELNRKWADHNKALQMIRDILMYM
Sbjct: 61  LHKFGEKLYSGLVTTMTHHLEVISKSIEAAQGGLFLEELNRKWADHNKALQMIRDILMYM 120

Query: 121 DRTFIPSTHKTPVHELGLNLWRDVVIHSSKIQTRLQDTLLELVQRERSGEVINRGLMRNI 180
           DRTFIPSTHKTPVHELGLNLWRD +IHS+KIQTRLQDTLL+LV RER+GEVINRGLMRN+
Sbjct: 121 DRTFIPSTHKTPVHELGLNLWRDNIIHSAKIQTRLQDTLLDLVLRERTGEVINRGLMRNV 180

Query: 181 TKMLMDLGSFVYQDDFEKHFLEVSADFYRLESQEFIESCDCGDYLKKAERRLNEEMERVS 240
            KMLMDLGS VYQDDFEKHFLEVSADFYR ESQ+FIE CDCG+YLKKAERRLNEEMERVS
Sbjct: 181 IKMLMDLGSSVYQDDFEKHFLEVSADFYRAESQQFIECCDCGEYLKKAERRLNEEMERVS 240

Query: 241 HYLDARSEAKITNVVEKEMIESHMNRLVHMENSGLVNMLVDDKYEDLGRMYCLFRRVPSG 300
           HYLDA+SEAKIT+VVEKEM+ESHM RLVHMENSGL+NMLVDDKYEDLGRMY LFRRVP+G
Sbjct: 241 HYLDAKSEAKITSVVEKEMVESHMQRLVHMENSGLINMLVDDKYEDLGRMYSLFRRVPNG 300

Query: 301 LILIRDVMTSYIRDTGKQLVSDPERLKDPVDFVQRLLDLKDKYDKVINSAFNNDKTFQNA 360
           L +IRDVMTS+IR TGKQLV+DPERLKDPVDFVQRLLD KDK DK+IN AFNNDKTFQNA
Sbjct: 301 LFIIRDVMTSHIRSTGKQLVTDPERLKDPVDFVQRLLDEKDKNDKIINLAFNNDKTFQNA 360

Query: 361 LNSSFEYFINLNSRSPEFISLFVDDKLRKGLRGVSEEDVENVLDKVMMLFRFLQEKDVFE 420
           LNSSFEYFINLNSRSPEFISLFVDDKLRKGL+GVSEEDVE VLDKVMMLFR+LQEKDVFE
Sbjct: 361 LNSSFEYFINLNSRSPEFISLFVDDKLRKGLKGVSEEDVEIVLDKVMMLFRYLQEKDVFE 420

Query: 421 KYYKQHLAKRLLSGKTVSDDAERSLIVKLKTECGYQFTSKLEGMFTDMKTSQDTMQGFYA 480
           KYYKQHLAKRLLSGKTVSDDAERSLIVKLKTECGYQFTSKLEGMFTDMKTS+DTMQGFYA
Sbjct: 421 KYYKQHLAKRLLSGKTVSDDAERSLIVKLKTECGYQFTSKLEGMFTDMKTSEDTMQGFYA 480

Query: 481 SLGAESGDSPTLTVQVLTTGSWPTQPSATCNLPAEIMGICEKFRSYYLGTHTGRRLTWQT 540
           S  AE+GD PTL VQVLTTGSWPTQPSATCNLPAEI+G+CEKFR YYLGTHTGRRL+WQT
Sbjct: 481 SSFAETGDGPTLAVQVLTTGSWPTQPSATCNLPAEILGVCEKFRGYYLGTHTGRRLSWQT 540

Query: 541 NMGTADLKGTFGKGQKHELNVSTYQMCVLMLFNSIDRLSYKEIEQATEIPAPELKRCLQS 600
           NMGTADLK TFG+GQKHELNVST+QMC LMLFN+ DRLSYKEIEQATEIPA +LKRCLQS
Sbjct: 541 NMGTADLKATFGRGQKHELNVSTHQMCALMLFNNADRLSYKEIEQATEIPASDLKRCLQS 600

Query: 601 LACVKGKHVLRKEPMSKDIAEDDAFFFNDKFTSKFVKVKIGTVVAQRESEPENQETRQRV 660
           +ACVKGK++LRKEPMSKDIAEDDAFF NDKF+SKF KVKIGTVVAQRESEPENQETRQRV
Sbjct: 601 MACVKGKNILRKEPMSKDIAEDDAFFVNDKFSSKFYKVKIGTVVAQRESEPENQETRQRV 660

Query: 661 EEDRKPQIEAAIVRIMKARRVLDHNNIVTEVTKQLQSRFLPNPVVIKKRIESLIEREFLE 720
           EEDRKPQIEAAIVRIMK+RRVLDHNNIV EVTKQLQSRFLP+PV+IKKRIESLIEREFLE
Sbjct: 661 EEDRKPQIEAAIVRIMKSRRVLDHNNIVAEVTKQLQSRFLPSPVLIKKRIESLIEREFLE 720

Query: 721 RDKVDRKLYRYLA 733
           RDKVDRKLYRYLA
Sbjct: 721 RDKVDRKLYRYLA 733

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449459468|ref|XP_004147468.1| PREDICTED: cullin-3A-like [Cucumis sativus] gi|449509229|ref|XP_004163530.1| PREDICTED: cullin-3A-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224111260|ref|XP_002315795.1| predicted protein [Populus trichocarpa] gi|222864835|gb|EEF01966.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356550799|ref|XP_003543771.1| PREDICTED: cullin-3A-like [Glycine max] Back     alignment and taxonomy information
>gi|356572514|ref|XP_003554413.1| PREDICTED: cullin-3A-like [Glycine max] Back     alignment and taxonomy information
>gi|224099735|ref|XP_002311598.1| predicted protein [Populus trichocarpa] gi|222851418|gb|EEE88965.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225425720|ref|XP_002275251.1| PREDICTED: cullin-3A [Vitis vinifera] Back     alignment and taxonomy information
>gi|242062528|ref|XP_002452553.1| hypothetical protein SORBIDRAFT_04g027970 [Sorghum bicolor] gi|241932384|gb|EES05529.1| hypothetical protein SORBIDRAFT_04g027970 [Sorghum bicolor] Back     alignment and taxonomy information
>gi|357138137|ref|XP_003570654.1| PREDICTED: cullin-3A-like [Brachypodium distachyon] Back     alignment and taxonomy information
>gi|413938863|gb|AFW73414.1| hypothetical protein ZEAMMB73_078676 [Zea mays] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query733
TAIR|locus:2205020732 CUL3B "AT1G69670" [Arabidopsis 0.998 1.0 0.810 0.0
TAIR|locus:2200670732 CUL3 "AT1G26830" [Arabidopsis 0.998 1.0 0.802 0.0
DICTYBASE|DDB_G0284903769 culC "cullin C" [Dictyostelium 0.815 0.777 0.547 4.4e-213
UNIPROTKB|Q13618768 CUL3 "Cullin-3" [Homo sapiens 0.751 0.717 0.525 5e-203
UNIPROTKB|E1BIN5768 CUL3 "Uncharacterized protein" 0.751 0.717 0.523 1e-202
RGD|1308190768 Cul3 "cullin 3" [Rattus norveg 0.751 0.717 0.523 1e-202
UNIPROTKB|F1PU58750 CUL3 "Uncharacterized protein" 0.738 0.721 0.528 2.7e-202
UNIPROTKB|E1BYQ3746 CUL3 "Uncharacterized protein" 0.735 0.722 0.528 3.5e-202
MGI|MGI:1347360768 Cul3 "cullin 3" [Mus musculus 0.751 0.717 0.522 3.5e-202
ZFIN|ZDB-GENE-081007-1766 cul3b "cullin 3b" [Danio rerio 0.740 0.708 0.527 5.7e-202
TAIR|locus:2205020 CUL3B "AT1G69670" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 3127 (1105.8 bits), Expect = 0., P = 0.
 Identities = 594/733 (81%), Positives = 665/733 (90%)

Query:     1 MSAPKKRTFQIEAFKHRVVVDPKYAEKTWKILEHAIHEIYNHNASGLSFEELYRNAYNMV 60
             MS  KKR FQIEAFK RVVVDPKYA+KTWKILEHAIHEIYNHNASGLSFEELYRNAYNMV
Sbjct:     1 MSNQKKRNFQIEAFKQRVVVDPKYADKTWKILEHAIHEIYNHNASGLSFEELYRNAYNMV 60

Query:    61 LHKFGEKLYSGLVTTMTFHLTEICKSIEAAQGGLFLEELNRKWADHNKALQMIRDILMYM 120
             LHK+G+KLY+GLVTTMTFHL EICKSIE AQGG FLE LNRKW DHNKALQMIRDILMYM
Sbjct:    61 LHKYGDKLYTGLVTTMTFHLKEICKSIEEAQGGAFLELLNRKWNDHNKALQMIRDILMYM 120

Query:   121 DRTFIPSTHKTPVHELGLNLWRDVVIHSSKIQTRLQDTLLELVQRERSGEVINRGLMRNI 180
             DRT++ +T KT VHELGL+LWRD V++SSKIQTRL +TLL+LV +ER+GEVI+R LMRN+
Sbjct:   121 DRTYVSTTKKTHVHELGLHLWRDNVVYSSKIQTRLLNTLLDLVHKERTGEVIDRVLMRNV 180

Query:   181 TKMLMDLGSFVYQDDFEKHFLEVSADFYRLESQEFIESCDCGDYLKKAERRLNEEMERVS 240
              KM MDLG  VYQDDFEK FLE SA+FY++ES EFIESCDCG+YLKKAE+ L EE+ERV 
Sbjct:   181 IKMFMDLGESVYQDDFEKPFLEASAEFYKVESMEFIESCDCGEYLKKAEKPLVEEVERVV 240

Query:   241 HYLDARSEAKITNVVEKEMIESHMNRLVHMENSGLVNMLVDDKYEDLGRMYCLFRRVPSG 300
             +YLDA+SEAKIT+VVE+EMI +H+ RLVHMENSGLVNML++DKYED+GRMY LFRRV +G
Sbjct:   241 NYLDAKSEAKITSVVEREMIANHVQRLVHMENSGLVNMLLNDKYEDMGRMYSLFRRVANG 300

Query:   301 LILIRDVMTSYIRDTGKQLVSDPERLKDPVDFVQRLLDLKDKYDKVINSAFNNDKTFQNA 360
             L+ +RDVMT ++R+ GKQLV+DPE+ KDPV+FVQRLLD +DKYD++IN AFNNDKTFQNA
Sbjct:   301 LVTVRDVMTLHLREMGKQLVTDPEKSKDPVEFVQRLLDERDKYDRIINMAFNNDKTFQNA 360

Query:   361 LNSSFEYFINLNSRSPEFISLFVDDKLRKGLRGVSEEDVENVLDKVMMLFRFLQEKDVFE 420
             LNSSFEYF+NLN+RSPEFISLFVDDKLRKGL+GV EEDV+ +LDKVMMLFR+LQEKDVFE
Sbjct:   361 LNSSFEYFVNLNTRSPEFISLFVDDKLRKGLKGVGEEDVDLILDKVMMLFRYLQEKDVFE 420

Query:   421 KYYKQHLAKRLLSGKTVSDDAERSLIVKLKTECGYQFTSKLEGMFTDMKTSQDTMQGFYA 480
             KYYKQHLAKRLLSGKTVSDDAER+LIVKLKTECGYQFTSKLEGMFTDMKTS DT+ GFY 
Sbjct:   421 KYYKQHLAKRLLSGKTVSDDAERNLIVKLKTECGYQFTSKLEGMFTDMKTSHDTLLGFYN 480

Query:   481 SLGAESGDSPTLTVQVLTTGSWPTQPSATCNLPAEIMGICEKFRSYYLGTHTGRRLTWQT 540
             S   E  + PTL VQVLTTGSWPTQP+  CNLPAE+  +CEKFRSYYLGTHTGRRL+WQT
Sbjct:   481 S-HPELSEGPTLVVQVLTTGSWPTQPTIQCNLPAEVSVLCEKFRSYYLGTHTGRRLSWQT 539

Query:   541 NMGTADLKGTFGKGQKHELNVSTYQMCVLMLFNSIDRLSYKEIEQATEIPAPELKRCLQS 600
             NMGTAD+K  FGKGQKHELNVST+QMCVLMLFN+ DRLSYKEIEQATEIP P+LKRCLQS
Sbjct:   540 NMGTADIKAVFGKGQKHELNVSTFQMCVLMLFNNSDRLSYKEIEQATEIPTPDLKRCLQS 599

Query:   601 LACVKGKHVLRKEPMSKDIAEDDAFFFNDKFTSKFVKVKIGTVVAQRESEPENQETRQRV 660
             +ACVKGK+VLRKEPMSK+IAE+D F  ND+F SKF KVKIGTVVAQ+E+EPE QETRQRV
Sbjct:   600 MACVKGKNVLRKEPMSKEIAEEDWFVVNDRFASKFYKVKIGTVVAQKETEPEKQETRQRV 659

Query:   661 EEDRKPQIEAAIVRIMKARRVLDHNNIVTEVTKQLQSRFLPNPVVIKKRIESLIEREFLE 720
             EEDRKPQIEAAIVRIMK+RRVLDHNNI+ EVTKQLQ+RFL NP  IKKRIESLIER+FLE
Sbjct:   660 EEDRKPQIEAAIVRIMKSRRVLDHNNIIAEVTKQLQTRFLANPTEIKKRIESLIERDFLE 719

Query:   721 RDKVDRKLYRYLA 733
             RD  DRKLYRYLA
Sbjct:   720 RDNTDRKLYRYLA 732
GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS
GO:0005634 "nucleus" evidence=ISM
GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA;TAS
GO:0031461 "cullin-RING ubiquitin ligase complex" evidence=IEA
GO:0031625 "ubiquitin protein ligase binding" evidence=IEA
GO:0000151 "ubiquitin ligase complex" evidence=TAS
GO:0005515 "protein binding" evidence=IPI
GO:0019005 "SCF ubiquitin ligase complex" evidence=IPI
GO:0009793 "embryo development ending in seed dormancy" evidence=IGI;RCA
GO:0009960 "endosperm development" evidence=IGI
GO:0000911 "cytokinesis by cell plate formation" evidence=RCA
GO:0007062 "sister chromatid cohesion" evidence=RCA
GO:0007155 "cell adhesion" evidence=RCA
GO:0009880 "embryonic pattern specification" evidence=RCA
GO:0010072 "primary shoot apical meristem specification" evidence=RCA
GO:0010090 "trichome morphogenesis" evidence=RCA
GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA
GO:0010413 "glucuronoxylan metabolic process" evidence=RCA
GO:0010431 "seed maturation" evidence=RCA
GO:0045010 "actin nucleation" evidence=RCA
GO:0045492 "xylan biosynthetic process" evidence=RCA
GO:0045595 "regulation of cell differentiation" evidence=RCA
GO:0048765 "root hair cell differentiation" evidence=RCA
GO:0051301 "cell division" evidence=RCA
GO:0071555 "cell wall organization" evidence=RCA
TAIR|locus:2200670 CUL3 "AT1G26830" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0284903 culC "cullin C" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|Q13618 CUL3 "Cullin-3" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E1BIN5 CUL3 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
RGD|1308190 Cul3 "cullin 3" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1PU58 CUL3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|E1BYQ3 CUL3 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
MGI|MGI:1347360 Cul3 "cullin 3" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-081007-1 cul3b "cullin 3b" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q6DE95CUL3A_XENLANo assigned EC number0.52820.98900.9440N/Ano
Q6GPF3CUL3B_XENLANo assigned EC number0.52690.98900.9440N/Ano
B5DF89CUL3_RATNo assigned EC number0.53020.99040.9453yesno
Q9ZVH4CUL3A_ARATHNo assigned EC number0.80210.99861.0nono
Q9C9L0CUL3B_ARATHNo assigned EC number0.81030.99861.0yesno
A4IHP4CUL3_XENTRNo assigned EC number0.52690.98900.9440yesno
Q17391CUL3_CAEELNo assigned EC number0.43660.97680.9214yesno
Q09760CUL3_SCHPONo assigned EC number0.37770.95490.8917yesno
Q13618CUL3_HUMANNo assigned EC number0.53150.99040.9453yesno
Q9JLV5CUL3_MOUSENo assigned EC number0.52890.99040.9453yesno
Q54NZ5CUL3_DICDINo assigned EC number0.53830.97540.9297yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00020935001
SubName- Full=Putative uncharacterized protein (Chromosome chr14 scaffold_21, whole genome shotgun sequence); (733 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00016431001
SubName- Full=Putative uncharacterized protein (Chromosome chr11 scaffold_13, whole genome shot [...] (120 aa)
    • • 0.567
GSVIVG00034065001
SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (122 aa)
    • • 0.534
GSVIVG00036331001
SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (329 aa)
    • • 0.508
GSVIVG00023341001
SubName- Full=Chromosome chr8 scaffold_29, whole genome shotgun sequence; (433 aa)
   •• • 0.423
GSVIVG00024224001
SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (98 aa)
   •• • 0.421
GSVIVG00035351001
SubName- Full=Chromosome undetermined scaffold_77, whole genome shotgun sequence; (1219 aa)
    • • 0.411
GSVIVG00028385001
SubName- Full=Chromosome chr10 scaffold_43, whole genome shotgun sequence; (1089 aa)
    • • 0.406

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query733
pfam00888603 pfam00888, Cullin, Cullin family 0.0
COG5647773 COG5647, COG5647, Cullin, a subunit of E3 ubiquiti 1e-151
smart00182143 smart00182, CULLIN, Cullin 7e-50
pfam1055768 pfam10557, Cullin_Nedd8, Cullin protein neddylatio 4e-29
smart0088468 smart00884, Cullin_Nedd8, Cullin protein neddylati 9e-28
>gnl|CDD|216175 pfam00888, Cullin, Cullin family Back     alignment and domain information 
 Score =  600 bits (1549), Expect = 0.0
 Identities = 253/611 (41%), Positives = 378/611 (61%), Gaps = 15/611 (2%)

Query: 29  WKILEHAIHEIYNHNASGLSFEELYRNAYNMVLHKFGEKLYSGLVTTMTFHLTEICKSIE 88
           W+ L  AI +I   + S L + ELY   YN V HK GEKLY+ L   +  ++  + KSI 
Sbjct: 1   WEKLLDAIDQILLKSFSSLDYMELYTAVYNYVPHKLGEKLYNRLKEYLEEYVAALLKSIL 60

Query: 89  AAQGGLFLEELNRKWADHNKALQMIRDILMYMDRTFIPSTHKTPVHELGLNLWRDVVIHS 148
                + L+   ++W   + +++++ +I MY++R ++   +   V+ELGL++WR+ +   
Sbjct: 61  ENDDEVLLKTYYKEWNKFSTSMKILNNIFMYLNRYYVKRKNLDGVYELGLDIWRESLFD- 119

Query: 149 SKIQTRLQDTLLELVQRERSGEVINRGLMRNITKMLMDLGS---FVYQDDFEKHFLEVSA 205
             I+ +L D LL L+++ER GE+I+R L++N+  M ++LG     VY++DFEK FLE ++
Sbjct: 120 -PIKDKLIDALLRLIEKERLGEIIDRSLIKNVLDMFVELGLDKLEVYKEDFEKPFLEATS 178

Query: 206 DFYRLESQEFIESCDCGDYLKKAERRLNEEMERVSHYLDARSEAKITNVVEKEMIESHMN 265
           +FY+ ES +F++     +Y+KK E RL EE ERV  YL + +E K+  V EK +IE H+ 
Sbjct: 179 EFYKKESSKFLQENSVSEYMKKVEERLEEEEERVRLYLHSSTEKKLIEVCEKVLIEKHLE 238

Query: 266 RLVHMENSGLVNMLVDDKYEDLGRMYCLFRRVPSGLILIRDVMTSYIRDTGKQLVSDPER 325
            L    +S    +L ++K EDL RMY L  RVP+GL  +R     +I+  G   VSD   
Sbjct: 239 FL----HSEFQRLLDNEKIEDLRRMYRLLSRVPNGLEPLRKYFEKHIKKEGLAAVSDLAV 294

Query: 326 LKDPVDFVQRLLDLKDKYDKVINSAFNNDKTFQNALNSSFEYFINLN-SRSPEFISLFVD 384
             DP D+VQ LL+L DKYD ++N AFNND  F NAL+ +FE FIN N S+S E ++ + D
Sbjct: 295 ETDPKDYVQTLLELHDKYDSLVNEAFNNDALFLNALDKAFEEFINSNSSKSAELLAKYCD 354

Query: 385 DKLRKGLRGVSEEDVENVLDKVMMLFRFLQEKDVFEKYYKQHLAKRLLSGKTVSDDAERS 444
             L+K L+G++EE++E  LDK+++LF+++++KDVFEK+Y++ LAKRLL+G + SDDAE+ 
Sbjct: 355 SLLKKSLKGLNEEELEEKLDKIIVLFKYIEDKDVFEKFYRKMLAKRLLNGTSASDDAEKK 414

Query: 445 LIVKLKTECGYQFTSKLEGMFTDMKTSQDTMQGFYASLGA---ESGDSPTLTVQVLTTGS 501
           +I KLK ECGYQFTSKLE MF D+  S++    F   L        +   L+V VL+TG 
Sbjct: 415 MIEKLKQECGYQFTSKLERMFKDISLSKELNNSFKNHLENNLDLLSEGIDLSVLVLSTGF 474

Query: 502 WPTQPSATCNLPAEIMGICEKFRSYYLGTHTGRRLTWQTNMGTADLKGTFGKGQKHELNV 561
           WPT P+   +LP E+    EKF  +Y   H+GR+LTW  ++G  +LK  F     +EL V
Sbjct: 475 WPTLPTEPFSLPEELEKALEKFEEFYSKKHSGRKLTWLHSLGRGELKAEFNDK-TYELTV 533

Query: 562 STYQMCVLMLFNSIDRLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRKEPMSKDIAE 621
           STYQM VL+LFN  + L+ +E+ +AT +    L+R LQSL   K    L K P  ++ + 
Sbjct: 534 STYQMAVLLLFNDQEELTVEELSEATGLSDDLLRRTLQSLLKAKVLL-LTKIPKGEEFSP 592

Query: 622 DDAFFFNDKFT 632
           +  F  N  FT
Sbjct: 593 NTVFSLNSDFT 603

Length = 603
>gnl|CDD|227934 COG5647, COG5647, Cullin, a subunit of E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|214545 smart00182, CULLIN, Cullin Back     alignment and domain information
>gnl|CDD|204512 pfam10557, Cullin_Nedd8, Cullin protein neddylation domain Back     alignment and domain information
>gnl|CDD|214883 smart00884, Cullin_Nedd8, Cullin protein neddylation domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 733
KOG2166725 consensus Cullins [Cell cycle control, cell divisi 100.0
COG5647773 Cullin, a subunit of E3 ubiquitin ligase [Posttran 100.0
KOG2167661 consensus Cullins [Cell cycle control, cell divisi 100.0
KOG2284728 consensus E3 ubiquitin ligase, Cullin 2 component 100.0
PF00888588 Cullin: Cullin family; InterPro: IPR001373 Cullins 100.0
KOG2285777 consensus E3 ubiquitin ligase, Cullin 1 component 100.0
smart00182142 CULLIN Cullin. 100.0
KOG2165765 consensus Anaphase-promoting complex (APC), subuni 99.96
PF1055768 Cullin_Nedd8: Cullin protein neddylation domain; I 99.78
PF08539158 HbrB: HbrB-like; InterPro: IPR013745 HbrB is invol 97.5
KOG2167661 consensus Cullins [Cell cycle control, cell divisi 96.29
TIGR0161095 phage_O_Nterm phage replication protein O, N-termi 94.89
PF1341248 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 94.17
PF0933952 HTH_IclR: IclR helix-turn-helix domain; InterPro: 93.98
PF1280262 MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP 93.11
PF0208283 Rrf2: Transcriptional regulator; InterPro: IPR0009 92.92
PF0822057 HTH_DeoR: DeoR-like helix-turn-helix domain; Inter 92.09
PF1346368 HTH_27: Winged helix DNA-binding domain; PDB: 3GFL 91.54
PF0104759 MarR: MarR family; InterPro: IPR000835 The MarR-ty 91.39
PF1284061 HTH_20: Helix-turn-helix domain; PDB: 1ULY_A 2CWE_ 90.29
TIGR02337118 HpaR homoprotocatechuate degradation operon regula 89.36
PF0102247 HTH_5: Bacterial regulatory protein, arsR family; 89.2
smart0055068 Zalpha Z-DNA-binding domain in adenosine deaminase 88.02
smart0034691 HTH_ICLR helix_turn_helix isocitrate lyase regulat 87.55
PF04492100 Phage_rep_O: Bacteriophage replication protein O ; 87.41
PRK11512144 DNA-binding transcriptional repressor MarR; Provis 87.36
PF0197868 TrmB: Sugar-specific transcriptional regulator Trm 86.64
TIGR01889109 Staph_reg_Sar staphylococcal accessory regulator f 85.51
smart0042053 HTH_DEOR helix_turn_helix, Deoxyribose operon repr 84.15
TIGR02698130 CopY_TcrY copper transport repressor, CopY/TcrY fa 84.09
smart00347101 HTH_MARR helix_turn_helix multiple antibiotic resi 84.06
PF0827955 HTH_11: HTH domain; InterPro: IPR013196 Winged hel 83.83
COG3355126 Predicted transcriptional regulator [Transcription 83.07
PRK15090257 DNA-binding transcriptional regulator KdgR; Provis 82.77
COG3682123 Predicted transcriptional regulator [Transcription 82.51
PRK10857164 DNA-binding transcriptional regulator IscR; Provis 81.74
PRK11920153 rirA iron-responsive transcriptional regulator; Re 81.71
PF05732165 RepL: Firmicute plasmid replication protein (RepL) 81.32
smart0041948 HTH_CRP helix_turn_helix, cAMP Regulatory protein. 80.08
PF08784102 RPA_C: Replication protein A C terminal; InterPro: 80.06
PF0470362 FaeA: FaeA-like protein; PDB: 2JT1_A 2HTJ_A. 80.02
>KOG2166 consensus Cullins [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information 
Probab=100.00  E-value=1.3e-115  Score=985.79  Aligned_cols=700  Identities=42%  Similarity=0.715  Sum_probs=646.1

Q ss_pred             ChhhHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHhhhccCCch----HHHHHHHHHHHHHHHHHHH-HHHHhhhhHHH
Q 004725           21 DPKYAEKTWKILEHAIHEIYNHNASGLSFEELYRNAYNMVLHKFG----EKLYSGLVTTMTFHLTEIC-KSIEAAQGGLF   95 (733)
Q Consensus        21 ~~~~~~~~W~~l~~~i~~I~~~~~~~~s~~~lY~~vy~lc~~~~~----~~LY~~l~~~i~~~~~~i~-~~l~~~~~~~~   95 (733)
                      +..+++++|..|..+++.+-+......+|+.+|+++|++|.++++    +.||.++++.+.+|+.+++ +.+....++.+
T Consensus        13 ~w~~~~~~~~~l~~~~~~~s~~~~~~~~~~~ly~t~~~~~~~k~~~~~~~~lY~~l~~~~~~yl~~~~~~~~~~~~~~~~   92 (725)
T KOG2166|consen   13 GWSYIETGITKLKRIIEGLSEPAFEQYQFMYLYTTIYNMCLQKPPHDYSQQLYDKYREVIEEYLIQTVLPALREKHDEYM   92 (725)
T ss_pred             cHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHH
Confidence            346667777777777663332223567899999999999999988    9999999999999999955 55556667889


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhhccccCC-CCCcHHHHH-HHHHHHHHhcchhhHHHHHHHHHHHHHHHhcCCCCC
Q 004725           96 LEELNRKWADHNKALQMIRDILMYMDRTFIPST-HKTPVHELG-LNLWRDVVIHSSKIQTRLQDTLLELVQRERSGEVIN  173 (733)
Q Consensus        96 L~~~~~~W~~~~~~~~~l~~if~YLDr~yv~~~-~~~~i~~~~-l~~f~~~v~~~~~l~~~l~~~il~~I~~~R~g~~i~  173 (733)
                      |..+...|.+|+.++.+++++|+||||+|+.++ +..++.+++ +.+|+..++.. ++.++++++++.+|..+|.|+.+|
T Consensus        93 l~~~~~~W~~~~~~~~~~~~i~~YldR~~v~~~~~~~~v~~~~~l~l~r~~v~~~-~~~~~~~~all~lI~~eR~ge~in  171 (725)
T KOG2166|consen   93 LRELAKRWNNHKVLVRWLSDFFMYLDRYYVAQSRRKLPTLNEVGLTCFRDLVYKF-EMQSEAIDALLALIHKEREGEQID  171 (725)
T ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhcCCCCcccceeeEEeehHHHHH-HHHHHHHHHHHHHHHhhccccccc
Confidence            999999999999999999999999999999975 666666666 99999999874 599999999999999999999999


Q ss_pred             hHHHHHHHHHHHHhC---cccchhhhhHhHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHhhccChhhHHH
Q 004725          174 RGLMRNITKMLMDLG---SFVYQDDFEKHFLEVSADFYRLESQEFIESCDCGDYLKKAERRLNEEMERVSHYLDARSEAK  250 (733)
Q Consensus       174 ~~~lk~ii~~l~~lg---~~~Y~~~FE~~~L~~t~~yY~~~s~~~l~~~~~~~Yl~~~~~~l~~E~~r~~~~l~~~t~~~  250 (733)
                      +..|+++++++..+|   .++|..+||++|++.|..||..++..|+...++++|+.+++.++.+|..|+..|++..+-++
T Consensus       172 ~~~i~~~~~~~~~lg~~~~s~Y~~~Fe~~fl~~t~~~y~~~~~~~l~~~~~~~yl~k~e~~l~~e~~r~~~yl~~~~e~~  251 (725)
T KOG2166|consen  172 RELIRNVIDVYVELGMGELSFYEEDFERKFLQDTASYYSEEASEWLEENSCLDYLKKIEECLKEERERVTHYLHSSTEPK  251 (725)
T ss_pred             HHHHhhHHHHHHhccccchhHHHHHhHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHhhhhhcccch
Confidence            999999999999998   67999999999999999999999999999889999999999999999999999999888888


Q ss_pred             HHHHHHHHHHHHHHHHHHhcchhhhHHhHccCcHhHHHHHHHhhccCCCChHHHHHHHHHHHHHHHhHhhcCcccC--CC
Q 004725          251 ITNVVEKEMIESHMNRLVHMENSGLVNMLVDDKYEDLGRMYCLFRRVPSGLILIRDVMTSYIRDTGKQLVSDPERL--KD  328 (733)
Q Consensus       251 l~~~~~~~Li~~~~~~ll~~~~~~~~~ll~~~~~~~L~~ly~l~~~~~~~l~~l~~~~~~~i~~~g~~~~~~~~~~--~~  328 (733)
                      +...++..++..+.+.+++..++|+..|+++++.++|.+||+++++++.|++.+++.+..|++.+|..++.....+  .+
T Consensus       252 ~~~~le~~~~~~~~~~~~e~~~sgf~~~l~~~~~edl~~my~l~~r~~~gl~~l~~~~~~~~~~eg~~l~~r~~~~~~~~  331 (725)
T KOG2166|consen  252 LVEVVEDELIVVFADDLEEMEHSGFRALLNDDKLEDLSRMYRLFRRILPGLEPLASVFKQHVREEGNALVARPAETAATN  331 (725)
T ss_pred             hhHHHHHHHHHHHHHHHHHHhcchHHHHHhccchhHHHHHHHHhhcccccchhHHHHHHHHHHhhHHHHhhhhhhhcccc
Confidence            8999999999999999988889999999999999999999999999999999999999999999998888766544  68


Q ss_pred             chHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcCCCCch-HHHHHHHHHHhhcCCCCCChHHHHHHHHhHh
Q 004725          329 PVDFVQRLLDLKDKYDKVINSAFNNDKTFQNALNSSFEYFINLNSRSP-EFISLFVDDKLRKGLRGVSEEDVENVLDKVM  407 (733)
Q Consensus       329 ~~~~i~~ll~l~~~~~~l~~~~F~~~~~f~~~l~~af~~~ln~~~~~~-e~La~y~D~~l~~~~~~~~~~~~e~~l~~i~  407 (733)
                      |..+++.++++++++..++..||+++..|.++++.||..|+|.+..++ |+||.|||.++|+|.++.++++++..+++++
T Consensus       332 ~~~~v~~~l~~~~~~~~~~~~~f~~d~~f~~~ld~a~~~fin~n~~~~~E~la~y~D~~lkk~~k~~~e~~ie~~l~~v~  411 (725)
T KOG2166|consen  332 PVEYVQGLLELHDKYKVLVKECFANDTLFKKALDAAFEEFINKNVATSAELLATYCDDILKKGSKKLSDEAIEDTLEKVV  411 (725)
T ss_pred             hHHHHhccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHcccCCCcHHHHHHHhHHHhcccccCCchhHHHhHhhcce
Confidence            999999999999999999999999999999999999999999877666 9999999999999888899999999999999


Q ss_pred             hhhccccchHHHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHHHhhCchhhhhHHHHHhhHHHHHHHHHHHHhhhhcCCC
Q 004725          408 MLFRFLQEKDVFEKYYKQHLAKRLLSGKTVSDDAERSLIVKLKTECGYQFTSKLEGMFTDMKTSQDTMQGFYASLGAESG  487 (733)
Q Consensus       408 ~lf~~l~~Kd~F~~~Y~~~L~~RLL~~~~~~~~~E~~~i~~Lk~~~G~~~~~kl~~M~~D~~~S~~l~~~f~~~~~~~~~  487 (733)
                      .+|+|+.+||+|+.+|++.||+|||+++|.|+++|+.||.+|++.||.+||.+|++|++|+..|++++..|.++...+..
T Consensus       412 ~l~~yisdKdvF~~~Ykk~lakRLl~~~S~sdd~E~~mIsklk~~~g~~~T~kL~~Mf~D~~~s~~l~~~F~~~~~~~~~  491 (725)
T KOG2166|consen  412 KLLKYISDKDVFAEFYKKVLARRLLFDRSASDDHEKSLITKLKNLCGEQFTSKLEGMFTDLTLSRELQTAFADYANYSAN  491 (725)
T ss_pred             eeeeeccHHHHHHHHHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHhHHHHHHHhhcccHHHHHHHHHHHHhhhchhcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999975201112


Q ss_pred             CCCceEEEEecCCCCCCCCCCCCCCcHHHHHHHHHHHHHHhccCCCceeEeecCcceEEEEEeeCCCceEEEEeeHHHHH
Q 004725          488 DSPTLTVQVLTTGSWPTQPSATCNLPAEIMGICEKFRSYYLGTHTGRRLTWQTNMGTADLKGTFGKGQKHELNVSTYQMC  567 (733)
Q Consensus       488 ~~~~~~~~VLt~~~WP~~~~~~~~lP~~l~~~~~~f~~~Y~~~~~~R~L~w~~~l~~~~i~~~~~~~~~~~l~~s~~Qa~  567 (733)
                      .+++|.|.|||+|+||.+++.++.||++|.++++.|+.||..+|+||+|+|+|++|+++|.++|.+ ++++++||++||+
T Consensus       492 ~~~df~v~VLt~g~WP~~~~~~~~LP~el~~~~e~F~~~Y~~kh~gR~L~w~~~l~~~ei~~~~~~-~~~~l~vst~Qm~  570 (725)
T KOG2166|consen  492 LGIDFTVTVLTTGFWPSYKSTDINLPSEMSDCVEMFKGFYATKHNGRRLTWIYSLGTGEINGKFDK-KTVELQVSTYQMA  570 (725)
T ss_pred             CCCceeEEEeecCCcCCccCCCCCCChhHHHHHHHHHHHHhhccCCCeeeeeeccCceEEEEEecC-ceEEEEEEhHHHH
Confidence            369999999999999998888899999999999999999999999999999999999999999997 7999999999999


Q ss_pred             HHHHHhCCCCcCHHHHHHHcCCChHHHHHHHHHhhhccCcceeeccCCCCCCCCCCeEeecccCcCCcceEEeccccccC
Q 004725          568 VLMLFNSIDRLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRKEPMSKDIAEDDAFFFNDKFTSKFVKVKIGTVVAQR  647 (733)
Q Consensus       568 iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~~iL~~~~~~~~~~~~~~f~~N~~f~~~~~ki~i~~~~~~~  647 (733)
                      ||++||+.+.+|+++|.+.|+++.+++.++|+||++.|.. ++.. |.++. ++++.|.+|.+|+++..|++++.++.+ 
T Consensus       571 VLlLFN~~d~lt~~eI~~~t~i~~~~l~~~L~Sl~~~K~~-v~~~-~~s~~-~~~~~~~~N~~f~sk~~Rv~i~~~~~~-  646 (725)
T KOG2166|consen  571 VLLLFNNTEKLTYEEILEQTNLGHEDLARLLQSLSCLKYK-ILLK-PMSRT-SPNDEFAFNSKFTSKMRRVKIPLPPMD-  646 (725)
T ss_pred             HHHHccchhhccHHHHHHHhCCCHHHHHHHHHHHHHHhHh-hccC-ccccC-CCCcEEEeeccccCcceeeccCCCCch-
Confidence            9999999999999999999999999999999999887744 6666 66666 899999999999999999999863332 


Q ss_pred             CCchhhHHHHHHHHhhhhhhhhhheehhcccCCCCChHHHHHHHHHHhccCCCCChHHHHHHHHHhhhhhcccccCCCCc
Q 004725          648 ESEPENQETRQRVEEDRKPQIEAAIVRIMKARRVLDHNNIVTEVTKQLQSRFLPNPVVIKKRIESLIEREFLERDKVDRK  727 (733)
Q Consensus       648 ~~~~e~~~~~~~~~~~r~~~i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~rd~~~~~  727 (733)
                          +.+.+.+.+++||+..|+||||||||+||.+.|++|+.+|.+|+++||.|++.+||+|||.|||||||+|| +|++
T Consensus       647 ----e~~~~~~~ve~dRk~~i~AaIVRIMK~rK~l~h~~Lv~Ev~~ql~~RF~p~v~~IKk~Ie~LIEkeYleR~-~~~~  721 (725)
T KOG2166|consen  647 ----ERKKVVEDVDKDRKYAIDAAIVRIMKSRKVLGHQQLVSEVVEQLSERFKPDIKMIKKRIEDLIEREYLERD-ENPN  721 (725)
T ss_pred             ----hHHHHHhhhhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhcc-CCCC
Confidence                77788999999999999999999999999999999999999999999999999999999999999999999 8999


Q ss_pred             ceee
Q 004725          728 LYRY  731 (733)
Q Consensus       728 ~y~Y  731 (733)
                      +|+|
T Consensus       722 ~Y~Y  725 (725)
T KOG2166|consen  722 IYRY  725 (725)
T ss_pred             cccC
Confidence            9998

>COG5647 Cullin, a subunit of E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2167 consensus Cullins [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG2284 consensus E3 ubiquitin ligase, Cullin 2 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF00888 Cullin: Cullin family; InterPro: IPR001373 Cullins are a family of hydrophobic proteins that act as scaffolds for ubiquitin ligases (E3) Back     alignment and domain information
>KOG2285 consensus E3 ubiquitin ligase, Cullin 1 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>smart00182 CULLIN Cullin Back     alignment and domain information
>KOG2165 consensus Anaphase-promoting complex (APC), subunit 2 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF10557 Cullin_Nedd8: Cullin protein neddylation domain; InterPro: IPR019559 This is the neddylation site of cullin proteins, which are a family of structurally related proteins containing an evolutionarily conserved cullin domain Back     alignment and domain information
>PF08539 HbrB: HbrB-like; InterPro: IPR013745 HbrB is involved in hyphal growth and polarity [] Back     alignment and domain information
>KOG2167 consensus Cullins [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>TIGR01610 phage_O_Nterm phage replication protein O, N-terminal domain Back     alignment and domain information
>PF13412 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A Back     alignment and domain information
>PF09339 HTH_IclR: IclR helix-turn-helix domain; InterPro: IPR005471 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities Back     alignment and domain information
>PF12802 MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP4_B 3KP2_A 3KP5_A 3KP3_B 3KP7_A 3NQO_B 3K0L_B Back     alignment and domain information
>PF02082 Rrf2: Transcriptional regulator; InterPro: IPR000944 The following uncharacterised bacterial proteins have been shown to be evolutionary related, Desulfovibrio vulgaris protein Rrf2; Escherichia coli hypothetical proteins yfhP and yjeB; Bacillus subtilis hypothetical proteins yhdE, yrzC and ywgB; Mycobacterium tuberculosis hypothetical protein Rv1287; and Synechocystis sp Back     alignment and domain information
>PF08220 HTH_DeoR: DeoR-like helix-turn-helix domain; InterPro: IPR001034 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism Back     alignment and domain information
>PF13463 HTH_27: Winged helix DNA-binding domain; PDB: 3GFL_A 2YR2_B 3GFM_A 3GFJ_A 3GF2_A 3GEZ_A 2GXG_A 3GFI_A 2EB7_A Back     alignment and domain information
>PF01047 MarR: MarR family; InterPro: IPR000835 The MarR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 135 amino acids present in transcription regulators of the MarR/SlyA family, involved in the development of antibiotic resistance Back     alignment and domain information
>PF12840 HTH_20: Helix-turn-helix domain; PDB: 1ULY_A 2CWE_A 1Y0U_B 2QUF_B 2QLZ_C 2OQG_B 2ZKZ_C 3PQK_A 3PQJ_D 3F6O_B Back     alignment and domain information
>TIGR02337 HpaR homoprotocatechuate degradation operon regulator, HpaR Back     alignment and domain information
>PF01022 HTH_5: Bacterial regulatory protein, arsR family; InterPro: IPR001845 Bacterial transcription regulatory proteins that bind DNA via a helix-turn-helix (HTH) motif can be grouped into families on the basis of sequence similarities Back     alignment and domain information
>smart00550 Zalpha Z-DNA-binding domain in adenosine deaminases Back     alignment and domain information
>smart00346 HTH_ICLR helix_turn_helix isocitrate lyase regulation Back     alignment and domain information
>PF04492 Phage_rep_O: Bacteriophage replication protein O ; InterPro: IPR006497 This entry is represented by the N-terminal domain of Bacteriophage lambda, GpO Back     alignment and domain information
>PRK11512 DNA-binding transcriptional repressor MarR; Provisional Back     alignment and domain information
>PF01978 TrmB: Sugar-specific transcriptional regulator TrmB; InterPro: IPR002831 TrmB, is a protein of 38,800 apparent molecular weight, that is involved in the maltose-specific regulation of the trehalose/maltose ABC transport operon in Thermococcus litoralis Back     alignment and domain information
>TIGR01889 Staph_reg_Sar staphylococcal accessory regulator family Back     alignment and domain information
>smart00420 HTH_DEOR helix_turn_helix, Deoxyribose operon repressor Back     alignment and domain information
>TIGR02698 CopY_TcrY copper transport repressor, CopY/TcrY family Back     alignment and domain information
>smart00347 HTH_MARR helix_turn_helix multiple antibiotic resistance protein Back     alignment and domain information
>PF08279 HTH_11: HTH domain; InterPro: IPR013196 Winged helix DNA-binding proteins share a related winged helix-turn-helix DNA-binding motif, where the "wings", or loops, are small beta-sheets Back     alignment and domain information
>COG3355 Predicted transcriptional regulator [Transcription] Back     alignment and domain information
>PRK15090 DNA-binding transcriptional regulator KdgR; Provisional Back     alignment and domain information
>COG3682 Predicted transcriptional regulator [Transcription] Back     alignment and domain information
>PRK10857 DNA-binding transcriptional regulator IscR; Provisional Back     alignment and domain information
>PRK11920 rirA iron-responsive transcriptional regulator; Reviewed Back     alignment and domain information
>PF05732 RepL: Firmicute plasmid replication protein (RepL); InterPro: IPR008813 This entry consists of proteins thought to be involved in plasmid replication Back     alignment and domain information
>smart00419 HTH_CRP helix_turn_helix, cAMP Regulatory protein Back     alignment and domain information
>PF08784 RPA_C: Replication protein A C terminal; InterPro: IPR014892 This protein corresponds to the C-terminal of the single stranded DNA binding protein RPA (replication protein A) Back     alignment and domain information
>PF04703 FaeA: FaeA-like protein; PDB: 2JT1_A 2HTJ_A Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query733
2hye_C759 Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Compl 1e-147
4a0k_A742 Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp 1e-146
4a0l_E726 Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp 1e-142
4a0c_C741 Structure Of The Cand1-Cul4b-Rbx1 Complex Length = 1e-142
1ldj_A760 Structure Of The Cul1-rbx1-skp1-f Boxskp2 Scf Ubiqu 1e-105
1u6g_A776 Crystal Structure Of The Cand1-Cul1-Roc1 Complex Le 1e-105
4ap2_B410 Crystal Structure Of The Human Klhl11-cul3 Complex 1e-100
4apf_B388 Crystal Structure Of The Human Klhl11-cul3 Complex 2e-99
4eoz_B364 Crystal Structure Of The Spop Btb Domain Complexed 1e-85
1ldk_B366 Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiqu 2e-64
3rtr_A368 A Ring E3-Substrate Complex Poised For Ubiquitin-Li 5e-62
4a64_A354 Crystal Structure Of The N-Terminal Domain Of Human 3e-45
4f52_A282 Structure Of A Glomulin-Rbx1-Cul1 Complex Length = 1e-40
1ldk_A396 Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiqu 6e-36
3dpl_C382 Structural Insights Into Nedd8 Activation Of Cullin 2e-35
3dqv_C382 Structural Insights Into Nedd8 Activation Of Cullin 1e-31
1iuy_A92 Solution Structure Of The Cullin-3 Homologue Length 6e-27
2wzk_A391 Structure Of The Cul5 N-Terminal Domain At 2.05a Re 3e-18
2do7_A101 Solution Structure Of The Winged Helix-Turn-Helix M 1e-15
3tdu_C77 N-Terminal Acetylation Acts As An Avidity Enhancer 3e-14
3o6b_B76 A Dual E3 Mechanism For Rub1 Ligation To Cdc53: Dcn 2e-07
3o2p_E88 A Dual E3 Mechanism For Rub1 Ligation To Cdc53: Dcn 2e-07
>pdb|2HYE|C Chain C, Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Complex Length = 759 Back     alignment and structure 
Iteration: 1

 Score =  517 bits (1331), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 297/728 (40%), Positives = 435/728 (59%), Gaps = 18/728 (2%)
Query: 11  IEAFKHRVVVDPKYAEKTWKILEHAIHEIYNHNASGLSFEELYRNAYNMVLHKFGEKLYS 70
           I+ F+ R  +   Y + TW+ L  A+  + +  +   + EELY+   N+  HK    LY 
Sbjct: 45  IKNFRDRPRLPDNYTQDTWRKLHEAVRAVQSSTSIRYNLEELYQAVENLCSHKVSPMLYK 104
Query: 71  GLVTTMTFHL-TEICKSIE-AAQGGLFLEELNRKWADHNKALQMIRDILMYMDRTFIPST 128
            L      H+  +I    E +    LFL+++N  W DH + + MIR I +++DRT++   
Sbjct: 105 QLRQACEDHVQAQILPFREDSLDSVLFLKKINTCWQDHCRQMIMIRSIFLFLDRTYVLQN 164
Query: 129 HKTP-VHELGLNLWRDVVIHSSKIQTRLQDTLLELVQRERSGEVINRGLMRNITKMLMDL 187
              P + ++GL L+R  +I    +Q++  D +L L++RERSGE ++R L+R++  ML DL
Sbjct: 165 STLPSIWDMGLELFRTHIISDKMVQSKTIDGILLLIERERSGEAVDRSLLRSLLGMLSDL 224
Query: 188 GSFVYQDDFEKHFLEVSADFYRLESQEFIESCDCGDYLKKAERRLNEEMERVSHYLDARS 247
              VY+D FE  FLE +   Y  E Q  ++  +  +YL    +RL EE +RV  YLD  +
Sbjct: 225 Q--VYKDSFELKFLEETNCLYAAEGQRLMQEREVPEYLNHVSKRLEEEGDRVITYLDHST 282
Query: 248 EAKITNVVEKEMIESHMNRLVHMENSGLVNMLVDDKYEDLGRMYCLFRRVPSGLILIRDV 307
           +  +   VEK+++  H+  ++     GL ++L +++  DL +MY LF RV  G   +   
Sbjct: 283 QKPLIACVEKQLLGEHLTAILQ---KGLDHLLDENRVPDLAQMYQLFSRVRGGQQALLQH 339
Query: 308 MTSYIRDTGKQLVSDPERLKDPVDFVQRLLDLKDKYDKVINSAFNNDKTFQNALNSSFEY 367
            + YI+  G  +V +PE+ KD    VQ LLD KDK D VI   F  ++ F N +  SFE 
Sbjct: 340 WSEYIKTFGTAIVINPEKDKD---MVQDLLDFKDKVDHVIEVCFQKNERFVNLMKESFET 396
Query: 368 FINLNSRSP-EFISLFVDDKLRKGLRGVSEEDVENVLDKVMMLFRFLQEKDVFEKYYKQH 426
           FIN     P E I+  VD KLR G +  ++E++E  LDK+M+LFRF+  KDVFE +YK+ 
Sbjct: 397 FINKRPNKPAELIAKHVDSKLRAGNKEATDEELERTLDKIMILFRFIHGKDVFEAFYKKD 456
Query: 427 LAKRLLSGKTVSDDAERSLIVKLKTECGYQFTSKLEGMFTDMKTSQDTMQGFYASLGAES 486
           LAKRLL GK+ S DAE+S++ KLK ECG  FTSKLEGMF DM+ S+D M  F   +  +S
Sbjct: 457 LAKRLLVGKSASVDAEKSMLSKLKHECGAAFTSKLEGMFKDMELSKDIMVHFKQHMQNQS 516
Query: 487 GDSPT-LTVQVLTTGSWPTQPSATCNLPAEIMGICEKFRSYYLGTHTGRRLTWQTNMGTA 545
              P  LTV +LT G WPT      +L  E++ + E F+++YLG H+GR+L WQT +G A
Sbjct: 517 DSGPIDLTVNILTMGYWPTYTPMEVHLTPEMIKLQEVFKAFYLGKHSGRKLQWQTTLGHA 576
Query: 546 DLKGTFGKGQKHELNVSTYQMCVLMLFNSIDRLSYKEIEQATEIPAPELKRCLQSLACVK 605
            LK  F +G+K E  VS +Q  VL++FN  D  S++EI+ AT I   EL+R LQSLAC K
Sbjct: 577 VLKAEFKEGKK-EFQVSLFQTLVLLMFNEGDGFSFEEIKMATGIEDSELRRTLQSLACGK 635
Query: 606 GKHVLRKEPMSKDIAEDDAFFFNDKFTSKFVKVKIGTVVAQRESEPENQETRQRVEEDRK 665
            + VL K P  K++ + D F FN +F  K  ++KI   +  +E+  E   T +RV +DR+
Sbjct: 636 AR-VLIKSPKGKEVEDGDKFIFNGEFKHKLFRIKINQ-IQMKETVEEQVSTTERVFQDRQ 693
Query: 666 PQIEAAIVRIMKARRVLDHNNIVTEVTKQLQSRFLPNPVVIKKRIESLIEREFLERDKVD 725
            QI+AAIVRIMK R+ L HN +V+E+  QL  +F   P  +KKRIESLI+R+++ERDK +
Sbjct: 694 YQIDAAIVRIMKMRKTLGHNLLVSELYNQL--KFPVKPGDLKKRIESLIDRDYMERDKDN 751
Query: 726 RKLYRYLA 733
              Y Y+A
Sbjct: 752 PNQYHYVA 759
>pdb|4A0K|A Chain A, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic Site Containing Dna-Duplex Length = 742 Back     alignment and structure
>pdb|4A0L|E Chain E, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic Site Containing Dna-Duplex Length = 726 Back     alignment and structure
>pdb|4A0C|C Chain C, Structure Of The Cand1-Cul4b-Rbx1 Complex Length = 741 Back     alignment and structure
>pdb|1LDJ|A Chain A, Structure Of The Cul1-rbx1-skp1-f Boxskp2 Scf Ubiquitin Ligase Complex Length = 760 Back     alignment and structure
>pdb|1U6G|A Chain A, Crystal Structure Of The Cand1-Cul1-Roc1 Complex Length = 776 Back     alignment and structure
>pdb|4AP2|B Chain B, Crystal Structure Of The Human Klhl11-cul3 Complex At 2.8a Resolution Length = 410 Back     alignment and structure
>pdb|4APF|B Chain B, Crystal Structure Of The Human Klhl11-cul3 Complex At 3.1a Resolution Length = 388 Back     alignment and structure
>pdb|4EOZ|B Chain B, Crystal Structure Of The Spop Btb Domain Complexed With The Cul3 N- Terminal Domain Length = 364 Back     alignment and structure
>pdb|1LDK|B Chain B, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin Ligase Complex Length = 366 Back     alignment and structure
>pdb|3RTR|A Chain A, A Ring E3-Substrate Complex Poised For Ubiquitin-Like Protein Transfer: Structural Insights Into Cullin-Ring Ligases Length = 368 Back     alignment and structure
>pdb|4A64|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Cul4b At 2.57a Resolution Length = 354 Back     alignment and structure
>pdb|4F52|A Chain A, Structure Of A Glomulin-Rbx1-Cul1 Complex Length = 282 Back     alignment and structure
>pdb|1LDK|A Chain A, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin Ligase Complex Length = 396 Back     alignment and structure
>pdb|3DPL|C Chain C, Structural Insights Into Nedd8 Activation Of Cullin-Ring Ligases: Conformational Control Of Conjugation Length = 382 Back     alignment and structure
>pdb|3DQV|C Chain C, Structural Insights Into Nedd8 Activation Of Cullin-Ring Ligases: Conformational Control Of Conjugation Length = 382 Back     alignment and structure
>pdb|1IUY|A Chain A, Solution Structure Of The Cullin-3 Homologue Length = 92 Back     alignment and structure
>pdb|2WZK|A Chain A, Structure Of The Cul5 N-Terminal Domain At 2.05a Resolution Length = 391 Back     alignment and structure
>pdb|2DO7|A Chain A, Solution Structure Of The Winged Helix-Turn-Helix Motif Of Human Cul-4b Length = 101 Back     alignment and structure
>pdb|3TDU|C Chain C, N-Terminal Acetylation Acts As An Avidity Enhancer Within An Interconnected Multiprotein Complex: Structure Of A Human Cul1whb- Dcn1p-Acetylated Ubc12n Complex Length = 77 Back     alignment and structure
>pdb|3O6B|B Chain B, A Dual E3 Mechanism For Rub1 Ligation To Cdc53: Dcn1(P)-Cdc53(Whb) Low Resolution Length = 76 Back     alignment and structure
>pdb|3O2P|E Chain E, A Dual E3 Mechanism For Rub1 Ligation To Cdc53: Dcn1(P)-Cdc53(Whb) Length = 88 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query733
2hye_C759 Cullin-4A, CUL-4A; beta propeller, ring finger, zi 0.0
1ldj_A760 Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc 0.0
3dpl_C382 Cullin-5; ubiquitin, NEDD8, cullin, HOST-virus int 1e-120
4ap2_B410 Cullin-3, CUL-3; ubiquitination, E3 ligase, cell c 1e-117
4eoz_B364 Cullin-3, CUL-3; E3 ubiquitin ligase, nucleus, pro 1e-110
4a64_A354 Cullin-4B, CUL4B, CUL-4B; cell cycle; 2.57A {Homo 2e-98
2wzk_A391 Cullin-5, CUL-5; UBL conjugation pathway, HIV, pho 3e-94
1iuy_A92 Cullin-3 homologue; winged helix, structural genom 2e-34
3tdu_C77 Cullin-1, CUL-1; E2:E3, ligase-protein binding com 3e-31
2do7_A101 Cullin-4B, CUL-4B; helix-turn-helix motif, structu 3e-31
3o2p_E88 Cell division control protein 53; ligase, cell cyc 2e-30
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-15
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-13
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-10
>2hye_C Cullin-4A, CUL-4A; beta propeller, ring finger, zinc finger, propeller cluster, helical repeats, cullin repeats, protein binding; HET: DNA; 3.10A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 4a0k_A* 4a0c_C 4a0l_E* Length = 759 Back     alignment and structure
 Score =  713 bits (1841), Expect = 0.0
 Identities = 294/736 (39%), Positives = 434/736 (58%), Gaps = 18/736 (2%)

Query: 3   APKKRTFQIEAFKHRVVVDPKYAEKTWKILEHAIHEIYNHNASGLSFEELYRNAYNMVLH 62
           A   +   I+ F+ R  +   Y + TW+ L  A+  + +  +   + EELY+   N+  H
Sbjct: 37  AGGSKKLVIKNFRDRPRLPDNYTQDTWRKLHEAVRAVQSSTSIRYNLEELYQAVENLCSH 96

Query: 63  KFGEKLYSGLVTTMTFHLTEICKSI--EAAQGGLFLEELNRKWADHNKALQMIRDILMYM 120
           K    LY  L      H+         ++    LFL+++N  W DH + + MIR I +++
Sbjct: 97  KVSPMLYKQLRQACEDHVQAQILPFREDSLDSVLFLKKINTCWQDHCRQMIMIRSIFLFL 156

Query: 121 DRTFIPSTHKTP-VHELGLNLWRDVVIHSSKIQTRLQDTLLELVQRERSGEVINRGLMRN 179
           DRT++      P + ++GL L+R  +I    +Q++  D +L L++RERSGE ++R L+R+
Sbjct: 157 DRTYVLQNSTLPSIWDMGLELFRTHIISDKMVQSKTIDGILLLIERERSGEAVDRSLLRS 216

Query: 180 ITKMLMDLGSFVYQDDFEKHFLEVSADFYRLESQEFIESCDCGDYLKKAERRLNEEMERV 239
           +  ML DL   VY+D FE  FLE +   Y  E Q  ++  +  +YL    +RL EE +RV
Sbjct: 217 LLGMLSDLQ--VYKDSFELKFLEETNCLYAAEGQRLMQEREVPEYLNHVSKRLEEEGDRV 274

Query: 240 SHYLDARSEAKITNVVEKEMIESHMNRLVHMENSGLVNMLVDDKYEDLGRMYCLFRRVPS 299
             YLD  ++  +   VEK+++  H+  ++      L ++L +++  DL +MY LF RV  
Sbjct: 275 ITYLDHSTQKPLIACVEKQLLGEHLTAILQKG---LDHLLDENRVPDLAQMYQLFSRVRG 331

Query: 300 GLILIRDVMTSYIRDTGKQLVSDPERLKDPVDFVQRLLDLKDKYDKVINSAFNNDKTFQN 359
           G   +    + YI+  G  +V +PE+ KD    VQ LLD KDK D VI   F  ++ F N
Sbjct: 332 GQQALLQHWSEYIKTFGTAIVINPEKDKD---MVQDLLDFKDKVDHVIEVCFQKNERFVN 388

Query: 360 ALNSSFEYFIN-LNSRSPEFISLFVDDKLRKGLRGVSEEDVENVLDKVMMLFRFLQEKDV 418
            +  SFE FIN   ++  E I+  VD KLR G +  ++E++E  LDK+M+LFRF+  KDV
Sbjct: 389 LMKESFETFINKRPNKPAELIAKHVDSKLRAGNKEATDEELERTLDKIMILFRFIHGKDV 448

Query: 419 FEKYYKQHLAKRLLSGKTVSDDAERSLIVKLKTECGYQFTSKLEGMFTDMKTSQDTMQGF 478
           FE +YK+ LAKRLL GK+ S DAE+S++ KLK ECG  FTSKLEGMF DM+ S+D M  F
Sbjct: 449 FEAFYKKDLAKRLLVGKSASVDAEKSMLSKLKHECGAAFTSKLEGMFKDMELSKDIMVHF 508

Query: 479 YASLGAESGDSPT-LTVQVLTTGSWPTQPSATCNLPAEIMGICEKFRSYYLGTHTGRRLT 537
              +  +S   P  LTV +LT G WPT      +L  E++ + E F+++YLG H+GR+L 
Sbjct: 509 KQHMQNQSDSGPIDLTVNILTMGYWPTYTPMEVHLTPEMIKLQEVFKAFYLGKHSGRKLQ 568

Query: 538 WQTNMGTADLKGTFGKGQKHELNVSTYQMCVLMLFNSIDRLSYKEIEQATEIPAPELKRC 597
           WQT +G A LK  F +G K E  VS +Q  VL++FN  D  S++EI+ AT I   EL+R 
Sbjct: 569 WQTTLGHAVLKAEFKEG-KKEFQVSLFQTLVLLMFNEGDGFSFEEIKMATGIEDSELRRT 627

Query: 598 LQSLACVKGKHVLRKEPMSKDIAEDDAFFFNDKFTSKFVKVKIGTVVAQRESEPENQETR 657
           LQSLAC K + VL K P  K++ + D F FN +F  K  ++KI   +  +E+  E   T 
Sbjct: 628 LQSLACGKAR-VLIKSPKGKEVEDGDKFIFNGEFKHKLFRIKI-NQIQMKETVEEQVSTT 685

Query: 658 QRVEEDRKPQIEAAIVRIMKARRVLDHNNIVTEVTKQLQSRFLPNPVVIKKRIESLIERE 717
           +RV +DR+ QI+AAIVRIMK R+ L HN +V+E+  QL  +F   P  +KKRIESLI+R+
Sbjct: 686 ERVFQDRQYQIDAAIVRIMKMRKTLGHNLLVSELYNQL--KFPVKPGDLKKRIESLIDRD 743

Query: 718 FLERDKVDRKLYRYLA 733
           ++ERDK +   Y Y+A
Sbjct: 744 YMERDKDNPNQYHYVA 759
>1ldj_A Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc ring finger, ligase, ubiquitin, ubiquitination, SCF; 3.00A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 1u6g_A 1ldk_A 1ldk_B 3rtr_A Length = 760 Back     alignment and structure
>3dpl_C Cullin-5; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} PDB: 3dqv_C Length = 382 Back     alignment and structure
>4ap2_B Cullin-3, CUL-3; ubiquitination, E3 ligase, cell cycle; HET: EDO; 2.80A {Homo sapiens} PDB: 4apf_B Length = 410 Back     alignment and structure
>4eoz_B Cullin-3, CUL-3; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} PDB: 4apf_B Length = 364 Back     alignment and structure
>4a64_A Cullin-4B, CUL4B, CUL-4B; cell cycle; 2.57A {Homo sapiens} Length = 354 Back     alignment and structure
>2wzk_A Cullin-5, CUL-5; UBL conjugation pathway, HIV, phosphoprotein, isopeptide bond, protein binding; 2.05A {Mus musculus} Length = 391 Back     alignment and structure
>1iuy_A Cullin-3 homologue; winged helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.34 Length = 92 Back     alignment and structure
>3tdu_C Cullin-1, CUL-1; E2:E3, ligase-protein binding complex; 1.50A {Homo sapiens} PDB: 3tdz_C Length = 77 Back     alignment and structure
>2do7_A Cullin-4B, CUL-4B; helix-turn-helix motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 101 Back     alignment and structure
>3o2p_E Cell division control protein 53; ligase, cell cycle; 2.23A {Saccharomyces cerevisiae} PDB: 3o6b_B Length = 88 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query733
2hye_C759 Cullin-4A, CUL-4A; beta propeller, ring finger, zi 100.0
1ldj_A760 Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc 100.0
3dpl_C382 Cullin-5; ubiquitin, NEDD8, cullin, HOST-virus int 100.0
4ap2_B410 Cullin-3, CUL-3; ubiquitination, E3 ligase, cell c 100.0
4eoz_B364 Cullin-3, CUL-3; E3 ubiquitin ligase, nucleus, pro 100.0
4a64_A354 Cullin-4B, CUL4B, CUL-4B; cell cycle; 2.57A {Homo 100.0
2wzk_A391 Cullin-5, CUL-5; UBL conjugation pathway, HIV, pho 100.0
3o2p_E88 Cell division control protein 53; ligase, cell cyc 99.92
1iuy_A92 Cullin-3 homologue; winged helix, structural genom 99.92
3tdu_C77 Cullin-1, CUL-1; E2:E3, ligase-protein binding com 99.92
2do7_A101 Cullin-4B, CUL-4B; helix-turn-helix motif, structu 99.92
2dk5_A91 DNA-directed RNA polymerase III 39 kDa polypeptide 90.57
3cuo_A99 Uncharacterized HTH-type transcriptional regulato; 89.05
2jt1_A77 PEFI protein; solution structure, winged helix-tur 88.77
3lmm_A583 Uncharacterized protein; multi-domained alpha-beta 88.65
1sfx_A109 Conserved hypothetical protein AF2008; structural 87.84
3jth_A98 Transcription activator HLYU; transcription factor 87.63
2htj_A81 P fimbrial regulatory protein KS71A; winged helix- 87.5
1y0u_A96 Arsenical resistance operon repressor, putative; s 87.24
1qgp_A77 Protein (double stranded RNA adenosine deaminase); 87.0
3g3z_A145 NMB1585, transcriptional regulator, MARR family; t 86.67
3tgn_A146 ADC operon repressor ADCR; helix-turn-helix, trans 86.63
1xn7_A78 Hypothetical protein YHGG; alpha+beta, GFT structu 86.42
3hsr_A140 HTH-type transcriptional regulator SARZ; helix-tur 86.06
3ech_A142 MEXR, multidrug resistance operon repressor; winge 85.99
3r0a_A123 Putative transcriptional regulator; structural gen 85.71
3nrv_A148 Putative transcriptional regulator (MARR/EMRR FAM; 85.07
2fu4_A83 Ferric uptake regulation protein; DNA binding doma 85.05
2d1h_A109 ST1889, 109AA long hypothetical transcriptional re 84.91
3cdh_A155 Transcriptional regulator, MARR family; helix-turn 84.89
2fbh_A146 Transcriptional regulator PA3341; MARR, transcript 84.64
3k0l_A162 Repressor protein; helix-turn-helix, structural ge 84.63
2k02_A87 Ferrous iron transport protein C; FEOC, iron-sulfu 84.58
1qbj_A81 Protein (double-stranded RNA specific adenosine D 84.49
3bpv_A138 Transcriptional regulator; MARR, DNA binding, tran 84.48
3oop_A143 LIN2960 protein; protein structure initiative, PSI 84.21
2gxg_A146 146AA long hypothetical transcriptional regulator; 84.19
4hbl_A149 Transcriptional regulator, MARR family; HTH, trans 83.94
3pqk_A102 Biofilm growth-associated repressor; helix-turn-he 83.92
2frh_A127 SARA, staphylococcal accessory regulator A; winged 83.82
1wi9_A72 Protein C20ORF116 homolog; helix-turn-helix motif, 83.78
2vn2_A128 DNAD, chromosome replication initiation protein; D 83.5
2qww_A154 Transcriptional regulator, MARR family; YP_013417. 83.47
1u2w_A122 CADC repressor, cadmium efflux system accessory pr 83.39
3bja_A139 Transcriptional regulator, MARR family, putative; 83.37
3eco_A139 MEPR; mutlidrug efflux pump regulator winged helix 83.17
3bj6_A152 Transcriptional regulator, MARR family; helix-turn 83.13
1jgs_A138 Multiple antibiotic resistance protein MARR; trans 83.13
1p6r_A82 Penicillinase repressor; transcription regulation, 83.11
3bro_A141 Transcriptional regulator; helix_TURN_helix, multi 82.94
1tbx_A99 ORF F-93, hypothetical 11.0 kDa protein; sulfolobu 82.84
1xmk_A79 Double-stranded RNA-specific adenosine deaminase; 82.25
3bdd_A142 Regulatory protein MARR; putative multiple antibio 81.93
2fa5_A162 Transcriptional regulator MARR/EMRR family; multip 81.8
1oyi_A82 Double-stranded RNA-binding protein; (alpha+beta) 81.68
2bv6_A142 MGRA, HTH-type transcriptional regulator MGRA; mul 81.67
2v79_A135 DNA replication protein DNAD; primosome, DNA-bindi 81.52
2pex_A153 Transcriptional regulator OHRR; transcription regu 81.29
2heo_A67 Z-DNA binding protein 1; protein DLM1-Z-DNA comple 81.22
2hr3_A147 Probable transcriptional regulator; MCSG, structur 81.19
3e6m_A161 MARR family transcriptional regulator; APC88769, s 81.15
2e1c_A171 Putative HTH-type transcriptional regulator PH151; 80.93
2nnn_A140 Probable transcriptional regulator; structural gen 80.89
3deu_A166 Transcriptional regulator SLYA; MARR, WING-helix, 80.85
2nyx_A168 Probable transcriptional regulatory protein, RV14; 80.65
1lj9_A144 Transcriptional regulator SLYA; HTH DNA binding pr 80.63
2rdp_A150 Putative transcriptional regulator MARR; PFAM PF01 80.27
3cjn_A162 Transcriptional regulator, MARR family; silicibact 80.1
2eth_A154 Transcriptional regulator, putative, MAR family; M 80.03
>2hye_C Cullin-4A, CUL-4A; beta propeller, ring finger, zinc finger, propeller cluster, helical repeats, cullin repeats, protein binding; HET: DNA; 3.10A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 4a0k_A* 4a0c_C 4a0l_E* Back     alignment and structure
Probab=100.00  E-value=1.9e-136  Score=1201.58  Aligned_cols=717  Identities=40%  Similarity=0.695  Sum_probs=679.1

Q ss_pred             CccCccceecCCCCCCCChhhHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHhhhccCCchHHHHHHHHHHHHHHHHHH
Q 004725            4 PKKRTFQIEAFKHRVVVDPKYAEKTWKILEHAIHEIYNHNASGLSFEELYRNAYNMVLHKFGEKLYSGLVTTMTFHLTEI   83 (733)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~W~~l~~~i~~I~~~~~~~~s~~~lY~~vy~lc~~~~~~~LY~~l~~~i~~~~~~i   83 (733)
                      +++|+++||||++++.+|++|+++.|..|++||+.|+++++.+.||+++|+.||++|++++|+.||+++++.+..|+..+
T Consensus        38 ~~~~~~~i~~~~~~~~~~~~~~e~~W~~L~~ai~~I~~~~~~~~s~e~LY~~vy~lc~~k~~~~LY~~l~~~~~~~l~~~  117 (759)
T 2hye_C           38 GGSKKLVIKNFRDRPRLPDNYTQDTWRKLHEAVRAVQSSTSIRYNLEELYQAVENLCSHKVSPMLYKQLRQACEDHVQAQ  117 (759)
T ss_dssp             ---CCCCEETCCCCSCSSCCTTTTHHHHHHHHHHTTSTTCCCSSCHHHHHHHHHHHCCTTTHHHHHHHHHHHHHHHHHHH
T ss_pred             CccccccccCCCCCCCCCcchHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence            35788999999988778889999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHh--hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCC-CCcHHHHHHHHHHHHHhcchhhHHHHHHHHH
Q 004725           84 CKSIEA--AQGGLFLEELNRKWADHNKALQMIRDILMYMDRTFIPSTH-KTPVHELGLNLWRDVVIHSSKIQTRLQDTLL  160 (733)
Q Consensus        84 ~~~l~~--~~~~~~L~~~~~~W~~~~~~~~~l~~if~YLDr~yv~~~~-~~~i~~~~l~~f~~~v~~~~~l~~~l~~~il  160 (733)
                      ++.+..  .+++.||..|..+|.+|+.++.+|+++|+||||+|+.+++ .++|+++|+.+|+++|+.++.+.++++++++
T Consensus       118 ~~~l~~~~~~~~~~L~~~~~~W~~~~~~~~~i~~if~YLDR~yv~~~~~~~~I~~lgL~lfr~~v~~~~~i~~~l~~~lL  197 (759)
T 2hye_C          118 ILPFREDSLDSVLFLKKINTCWQDHCRQMIMIRSIFLFLDRTYVLQNSTLPSIWDMGLELFRTHIISDKMVQSKTIDGIL  197 (759)
T ss_dssp             HHHHTSCCCCTTHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTTSCSSSCCHHHHHHHHHHHTTTSSSTTHHHHHHHHH
T ss_pred             HHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHhhCCCCCCcHHHHHHHHHHHHHhcCHhHHHHHHHHHH
Confidence            887744  2335899999999999999999999999999999999876 7999999999999999997779999999999


Q ss_pred             HHHHHHhcCCCCChHHHHHHHHHHHHhCcccchhhhhHhHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHh
Q 004725          161 ELVQRERSGEVINRGLMRNITKMLMDLGSFVYQDDFEKHFLEVSADFYRLESQEFIESCDCGDYLKKAERRLNEEMERVS  240 (733)
Q Consensus       161 ~~I~~~R~g~~i~~~~lk~ii~~l~~lg~~~Y~~~FE~~~L~~t~~yY~~~s~~~l~~~~~~~Yl~~~~~~l~~E~~r~~  240 (733)
                      ++|+++|+|+.+|+.+++++++||.+|+  +|.+.||++||++|..||+.+++.|+++.++++|+++|+.++++|.+||.
T Consensus       198 ~lI~~eR~Ge~id~~llk~vi~ml~~L~--vY~~~FE~~fL~~T~~fY~~e~~~~l~~~~~~~Yl~~~e~rl~eE~~r~~  275 (759)
T 2hye_C          198 LLIERERSGEAVDRSLLRSLLGMLSDLQ--VYKDSFELKFLEETNCLYAAEGQRLMQEREVPEYLNHVSKRLEEEGDRVI  275 (759)
T ss_dssp             HHHHTTTTTCCCCHHHHHHHHHHHHHTT--CHHHHTHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTHHHHT
T ss_pred             HHHHHHhcCCCCcHHHHHHHHHHhhhhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999996  99999999999999999999999999999999999999999999999999


Q ss_pred             hccChhhHHHHHHHHHHHHHHHHHHHHHhcchhhhHHhHccCcHhHHHHHHHhhccCCCChHHHHHHHHHHHHHHHhHhh
Q 004725          241 HYLDARSEAKITNVVEKEMIESHMNRLVHMENSGLVNMLVDDKYEDLGRMYCLFRRVPSGLILIRDVMTSYIRDTGKQLV  320 (733)
Q Consensus       241 ~~l~~~t~~~l~~~~~~~Li~~~~~~ll~~~~~~~~~ll~~~~~~~L~~ly~l~~~~~~~l~~l~~~~~~~i~~~g~~~~  320 (733)
                      .||+++|.++|.++|+++||.+|++.+++   +|+..||++++.++|++||+|+++++++++.|+..|++||++.|.+++
T Consensus       276 ~yL~~~t~~~l~~~~~~~Li~~~~~~ll~---~~~~~lL~~~~~~dL~~mY~L~~rv~~~l~~l~~~~~~~I~~~g~~iv  352 (759)
T 2hye_C          276 TYLDHSTQKPLIACVEKQLLGEHLTAILQ---KGLDHLLDENRVPDLAQMYQLFSRVRGGQQALLQHWSEYIKTFGTAIV  352 (759)
T ss_dssp             TTSCTTTHHHHHHHHHHHHTTTCSHHHHH---TTHHHHHTTTCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhcChhhHHHHHHHHHHHHHHHHHHHHHH---hhHHHHHhcCCHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhHHHh
Confidence            99999999999999999999999999985   489999999999999999999999999999999999999999999999


Q ss_pred             cCcccCCCchHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcCC-CCchHHHHHHHHHHhhcCCCCCChHHH
Q 004725          321 SDPERLKDPVDFVQRLLDLKDKYDKVINSAFNNDKTFQNALNSSFEYFINLN-SRSPEFISLFVDDKLRKGLRGVSEEDV  399 (733)
Q Consensus       321 ~~~~~~~~~~~~i~~ll~l~~~~~~l~~~~F~~~~~f~~~l~~af~~~ln~~-~~~~e~La~y~D~~l~~~~~~~~~~~~  399 (733)
                      .+...   +..||+.|+++|++|+.++.+||++|+.|..++++||+.|+|.+ .++||+||+|||.+||+|.++.+++++
T Consensus       353 ~~~~~---~~~~V~~ll~~~~k~~~lv~~~F~~d~~f~~al~~af~~fiN~~~~~~~E~la~y~D~~Lk~~~k~~~e~e~  429 (759)
T 2hye_C          353 INPEK---DKDMVQDLLDFKDKVDHVIEVCFQKNERFVNLMKESFETFINKRPNKPAELIAKHVDSKLRAGNKEATDEEL  429 (759)
T ss_dssp             SCGGG---TTTHHHHHHHHHHHHHHHHHTTTTTCHHHHHHHHHHHHHHHTTSCSHHHHHHHHHHHHHHSSCGGGCCSTTH
T ss_pred             cCccc---HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhccCCCCCCHHHH
Confidence            76542   47899999999999999999999999999999999999999974 689999999999999998888888999


Q ss_pred             HHHHHhHhhhhccccchHHHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHHHhhCchhhhhHHHHHhhHHHHHHHHHHHH
Q 004725          400 ENVLDKVMMLFRFLQEKDVFEKYYKQHLAKRLLSGKTVSDDAERSLIVKLKTECGYQFTSKLEGMFTDMKTSQDTMQGFY  479 (733)
Q Consensus       400 e~~l~~i~~lf~~l~~Kd~F~~~Y~~~L~~RLL~~~~~~~~~E~~~i~~Lk~~~G~~~~~kl~~M~~D~~~S~~l~~~f~  479 (733)
                      +..+++++.+|+|+++||+|+.+|+++||+|||.+++.+.+.|+.||++||.+||.+||++|++|++|+..|++++..|+
T Consensus       430 e~~L~~i~~lf~~i~~KDvF~~~Y~~~LakRLL~~~s~s~d~E~~~i~~Lk~~~G~~~t~kle~M~~Di~~S~~l~~~f~  509 (759)
T 2hye_C          430 ERTLDKIMILFRFIHGKDVFEAFYKKDLAKRLLVGKSASVDAEKSMLSKLKHECGAAFTSKLEGMFKDMELSKDIMVHFK  509 (759)
T ss_dssp             HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHTTTCTTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhcC-CCCCCceEEEEecCCCCCCCCCCCCCCcHHHHHHHHHHHHHHhccCCCceeEeecCcceEEEEEeeCCCceEE
Q 004725          480 ASLGAE-SGDSPTLTVQVLTTGSWPTQPSATCNLPAEIMGICEKFRSYYLGTHTGRRLTWQTNMGTADLKGTFGKGQKHE  558 (733)
Q Consensus       480 ~~~~~~-~~~~~~~~~~VLt~~~WP~~~~~~~~lP~~l~~~~~~f~~~Y~~~~~~R~L~w~~~l~~~~i~~~~~~~~~~~  558 (733)
                      ++.... .+.+++|+|.|||+++||.++..++.+|++|..+++.|++||..+|+||+|+|.+++|+|+|+++|++ ++++
T Consensus       510 ~~~~~~~~~~~~~~~v~VLs~~~WP~~~~~~~~lP~~l~~~~~~F~~fY~~~~~gRkL~W~~~lg~~~l~~~~~~-~~~~  588 (759)
T 2hye_C          510 QHMQNQSDSGPIDLTVNILTMGYWPTYTPMEVHLTPEMIKLQEVFKAFYLGKHSGRKLQWQTTLGHAVLKAEFKE-GKKE  588 (759)
T ss_dssp             HHHHTTCCCCCCEEEEEEEETTTSCCCCCCCCCCCHHHHHHHHHHHHHHHTTSCSEECCBCGGGCEEEEECCCSS-CCCE
T ss_pred             HHHhcccCCCCCceEEEEeCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhCCCCEEEeccccCcEEEEEEeCC-ceEE
Confidence            876321 23368999999999999999888999999999999999999999999999999999999999999987 7899


Q ss_pred             EEeeHHHHHHHHHHhCCCCcCHHHHHHHcCCChHHHHHHHHHhhhccCcceeeccCCCCCCCCCCeEeecccCcCCcceE
Q 004725          559 LNVSTYQMCVLMLFNSIDRLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRKEPMSKDIAEDDAFFFNDKFTSKFVKV  638 (733)
Q Consensus       559 l~~s~~Qa~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~~iL~~~~~~~~~~~~~~f~~N~~f~~~~~ki  638 (733)
                      ++||++||+||++||+.+++|+++|++.||+++++|+++|++|++++.+ ||.+.|+++++.+++.|.+|.+|+++..||
T Consensus       589 l~vs~~Qa~iLllFn~~~~lt~~ei~~~t~i~~~~l~r~L~sL~~~k~~-vL~~~p~~~~v~~~d~f~lN~~f~~~~~ri  667 (759)
T 2hye_C          589 FQVSLFQTLVLLMFNEGDGFSFEEIKMATGIEDSELRRTLQSLACGKAR-VLIKSPKGKEVEDGDKFIFNGEFKHKLFRI  667 (759)
T ss_dssp             EEEEHHHHHHHHHTTSCCCEEHHHHHHHTCCCHHHHHHHHHTTTTTTTC-SEEETTCSSSCCSSCEEEECCCCCCSCSSE
T ss_pred             EEEcHHHHHHHHHhcCCCCcCHHHHHHHHCcCHHHHHHHHHHHHccCCc-eeecCCCCCCCCCCCEEEeeccccCCceEE
Confidence            9999999999999999999999999999999999999999999976666 999999999999999999999999999999


Q ss_pred             EeccccccCCCchhhHHHHHHHHhhhhhhhhhheehhcccCCCCChHHHHHHHHHHhccCCCCChHHHHHHHHHhhhhhc
Q 004725          639 KIGTVVAQRESEPENQETRQRVEEDRKPQIEAAIVRIMKARRVLDHNNIVTEVTKQLQSRFLPNPVVIKKRIESLIEREF  718 (733)
Q Consensus       639 ~i~~~~~~~~~~~e~~~~~~~~~~~r~~~i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIerey  718 (733)
                      +|+.+.. +++.+|.+.+.+.+.+||+..|+||||||||+||+|+|++|+.+|+++++  |+|++.+||+|||+||+|||
T Consensus       668 ki~~i~~-~e~~~e~~~t~~~v~~dR~~~i~AaIVRIMK~rK~l~h~~Lv~ev~~ql~--F~p~~~~IKk~Ie~LIereY  744 (759)
T 2hye_C          668 KINQIQM-KETVEEQVSTTERVFQDRQYQIDAAIVRIMKMRKTLGHNLLVSELYNQLK--FPVKPGDLKKRIESLIDRDY  744 (759)
T ss_dssp             ECGGGGG-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSEEETHHHHHHHHHHSS--SCCCHHHHHHHHHHHHHTTS
T ss_pred             Eeccccc-cccchhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHcC--CCCCHHHHHHHHHHHhcccc
Confidence            9987543 46777778888999999999999999999999999999999999999998  99999999999999999999


Q ss_pred             ccccCCCCcceeecC
Q 004725          719 LERDKVDRKLYRYLA  733 (733)
Q Consensus       719 i~rd~~~~~~y~Yva  733 (733)
                      |+||++|+++|+|+|
T Consensus       745 leR~~~~~~~y~YlA  759 (759)
T 2hye_C          745 MERDKDNPNQYHYVA  759 (759)
T ss_dssp             CBCCSSCTTEEECCC
T ss_pred             eecCCCCCCeeEecC
Confidence            999999999999998
>1ldj_A Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc ring finger, ligase, ubiquitin, ubiquitination, SCF; 3.00A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 1u6g_A 1ldk_A 1ldk_B 3rtr_A Back     alignment and structure
>3dpl_C Cullin-5; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} PDB: 3dqv_C Back     alignment and structure
>4ap2_B Cullin-3, CUL-3; ubiquitination, E3 ligase, cell cycle; HET: EDO; 2.80A {Homo sapiens} Back     alignment and structure
>4eoz_B Cullin-3, CUL-3; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} PDB: 4apf_B Back     alignment and structure
>4a64_A Cullin-4B, CUL4B, CUL-4B; cell cycle; 2.57A {Homo sapiens} Back     alignment and structure
>2wzk_A Cullin-5, CUL-5; UBL conjugation pathway, HIV, phosphoprotein, isopeptide bond, protein binding; 2.05A {Mus musculus} Back     alignment and structure
>3o2p_E Cell division control protein 53; ligase, cell cycle; 2.23A {Saccharomyces cerevisiae} PDB: 3o6b_B Back     alignment and structure
>1iuy_A Cullin-3 homologue; winged helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.34 Back     alignment and structure
>3tdu_C Cullin-1, CUL-1; E2:E3, ligase-protein binding complex; 1.50A {Homo sapiens} PDB: 3tdz_C Back     alignment and structure
>2do7_A Cullin-4B, CUL-4B; helix-turn-helix motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85 Back     alignment and structure
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12} Back     alignment and structure
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2} Back     alignment and structure
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae} Back     alignment and structure
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50 Back     alignment and structure
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus} Back     alignment and structure
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73 Back     alignment and structure
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5 Back     alignment and structure
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19 Back     alignment and structure
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B} Back     alignment and structure
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae} Back     alignment and structure
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62 Back     alignment and structure
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A Back     alignment and structure
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A Back     alignment and structure
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei} Back     alignment and structure
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP} Back     alignment and structure
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli} Back     alignment and structure
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50 Back     alignment and structure
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3} Back     alignment and structure
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 Back     alignment and structure
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP} Back     alignment and structure
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp} Back     alignment and structure
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A Back     alignment and structure
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A* Back     alignment and structure
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua} Back     alignment and structure
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A Back     alignment and structure
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis} Back     alignment and structure
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A Back     alignment and structure
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D Back     alignment and structure
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47 Back     alignment and structure
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426} Back     alignment and structure
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str} Back     alignment and structure
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A Back     alignment and structure
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus} Back     alignment and structure
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0 Back     alignment and structure
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3} Back     alignment and structure
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28 Back     alignment and structure
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B Back     alignment and structure
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28 Back     alignment and structure
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48 Back     alignment and structure
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19 Back     alignment and structure
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis} Back     alignment and structure
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris} Back     alignment and structure
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19 Back     alignment and structure
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28 Back     alignment and structure
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis} Back     alignment and structure
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A Back     alignment and structure
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A Back     alignment and structure
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28 Back     alignment and structure
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi} Back     alignment and structure
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa} Back     alignment and structure
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28 Back     alignment and structure
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis} Back     alignment and structure
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28 Back     alignment and structure
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus} Back     alignment and structure
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3} Back     alignment and structure
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 733
d2hyec2347 a.118.17.1 (C:55-401) Cullin-4A {Human (Homo sapie 1e-109
d1ldja2394 a.118.17.1 (A:17-410) Cullin homolog 1, Cul-1 {Hum 8e-98
d2hyec3273 e.40.1.1 (C:403-675) Cullin-4A {Human (Homo sapien 1e-94
d1ldja3276 e.40.1.1 (A:411-686) Cullin homolog 1, cul-1 {Huma 2e-93
d1iuya_92 a.4.5.34 (A:) Cullin-3 homologue {Mouse (Mus muscu 5e-35
d1ldja190 a.4.5.34 (A:687-776) Anaphase promoting complex (A 9e-33
d2hyec184 a.4.5.34 (C:676-759) Cullin-4A {Human (Homo sapien 3e-31
>d2hyec2 a.118.17.1 (C:55-401) Cullin-4A {Human (Homo sapiens) [TaxId: 9606]} Length = 347 Back     information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cullin repeat-like
family: Cullin repeat
domain: Cullin-4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  335 bits (859), Expect = e-109
 Identities = 119/351 (33%), Positives = 189/351 (53%), Gaps = 11/351 (3%)

Query: 23  KYAEKTWKILEHAIHEIYNHNASGLSFEELYRNAYNMVLHKFGEKLYSGLVTTMTFHLTE 82
            Y + TW+ L  A+  + +  +   + EELY+   N+  HK    LY  L      H+  
Sbjct: 3   NYTQDTWRKLHEAVRAVQSSTSIRYNLEELYQAVENLCSHKVSPMLYKQLRQACEDHVQA 62

Query: 83  ICKSI--EAAQGGLFLEELNRKWADHNKALQMIRDILMYMDRTFIPSTHKTP-VHELGLN 139
                  ++    LFL+++N  W DH + + MIR I +++DRT++      P + ++GL 
Sbjct: 63  QILPFREDSLDSVLFLKKINTCWQDHCRQMIMIRSIFLFLDRTYVLQNSTLPSIWDMGLE 122

Query: 140 LWRDVVIHSSKIQTRLQDTLLELVQRERSGEVINRGLMRNITKMLMDLGSFVYQDDFEKH 199
           L+R  +I    +Q++  D +L L++RERSGE ++R L+R++  ML DL   VY+D FE  
Sbjct: 123 LFRTHIISDKMVQSKTIDGILLLIERERSGEAVDRSLLRSLLGMLSDLQ--VYKDSFELK 180

Query: 200 FLEVSADFYRLESQEFIESCDCGDYLKKAERRLNEEMERVSHYLDARSEAKITNVVEKEM 259
           FLE +   Y  E Q  ++  +  +YL    +RL EE +RV  YLD  ++  +   VEK++
Sbjct: 181 FLEETNCLYAAEGQRLMQEREVPEYLNHVSKRLEEEGDRVITYLDHSTQKPLIACVEKQL 240

Query: 260 IESHMNRLVHMENSGLVNMLVDDKYEDLGRMYCLFRRVPSGLILIRDVMTSYIRDTGKQL 319
           +  H+  ++     GL ++L +++  DL +MY LF RV  G   +    + YI+  G  +
Sbjct: 241 LGEHLTAILQK---GLDHLLDENRVPDLAQMYQLFSRVRGGQQALLQHWSEYIKTFGTAI 297

Query: 320 VSDPERLKDPVDFVQRLLDLKDKYDKVINSAFNNDKTFQNALNSSFEYFIN 370
           V +PE+ K   D VQ LLD KDK D VI   F  ++ F N +  SFE FIN
Sbjct: 298 VINPEKDK---DMVQDLLDFKDKVDHVIEVCFQKNERFVNLMKESFETFIN 345
>d1ldja2 a.118.17.1 (A:17-410) Cullin homolog 1, Cul-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 394 Back     information, alignment and structure
>d2hyec3 e.40.1.1 (C:403-675) Cullin-4A {Human (Homo sapiens) [TaxId: 9606]} Length = 273 Back     information, alignment and structure
>d1ldja3 e.40.1.1 (A:411-686) Cullin homolog 1, cul-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 276 Back     information, alignment and structure
>d1iuya_ a.4.5.34 (A:) Cullin-3 homologue {Mouse (Mus musculus) [TaxId: 10090]} Length = 92 Back     information, alignment and structure
>d1ldja1 a.4.5.34 (A:687-776) Anaphase promoting complex (APC) {Human (Homo sapiens) [TaxId: 9606]} Length = 90 Back     information, alignment and structure
>d2hyec1 a.4.5.34 (C:676-759) Cullin-4A {Human (Homo sapiens) [TaxId: 9606]} Length = 84 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query733
d2hyec2347 Cullin-4A {Human (Homo sapiens) [TaxId: 9606]} 100.0
d1ldja2394 Cullin homolog 1, Cul-1 {Human (Homo sapiens) [Tax 100.0
d2hyec3273 Cullin-4A {Human (Homo sapiens) [TaxId: 9606]} 100.0
d1ldja3276 Cullin homolog 1, cul-1 {Human (Homo sapiens) [Tax 100.0
d1ldja190 Anaphase promoting complex (APC) {Human (Homo sapi 99.92
d2hyec184 Cullin-4A {Human (Homo sapiens) [TaxId: 9606]} 99.91
d1iuya_92 Cullin-3 homologue {Mouse (Mus musculus) [TaxId: 1 99.89
d1mkma175 Transcriptional regulator IclR, N-terminal domain 90.26
d1lnwa_141 MexR repressor {Pseudomonas aeruginosa [TaxId: 287 90.03
d1z05a171 Transcriptional regulator VC2007 N-terminal domain 89.9
d1sfxa_109 Hypothetical protein AF2008 {Archaeoglobus fulgidu 89.44
d1lj9a_144 Transcriptional regulator SlyA {Enterococcus faeca 89.0
d2a61a1139 Transcriptional regulator TM0710 {Thermotoga marit 88.57
d1dpua_69 C-terminal domain of RPA32 {Human (Homo sapiens) [ 88.35
d2etha1140 Putative transcriptional regulator TM0816 {Thermot 88.09
d1ylfa1138 Hypothetical protein BC1842 {Bacillus cereus [TaxI 87.56
d1i1ga160 LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]} 87.4
d2cfxa163 Transcriptional regulator LrpC {Bacillus subtilis 87.23
d2d1ha1109 Hypothetical transcriptional regulator ST1889 {Sul 87.2
d2cg4a163 Regulatory protein AsnC {Escherichia coli [TaxId: 87.19
d2frha1115 Pleiotropic regulator of virulence genes, SarA {St 87.16
d1z91a1137 Organic hydroperoxide resistance transcriptional r 86.03
d1p4xa2125 Staphylococcal accessory regulator A homolog, SarS 85.55
d2cyya160 Putative transcriptional regulator PH1519 {Archaeo 85.45
d1p4xa1125 Staphylococcal accessory regulator A homolog, SarS 85.14
d1jgsa_138 Multiple antibiotic resistance repressor, MarR {Es 84.72
d1s3ja_143 Putative transcriptional regulator YusO {Bacillus 84.67
d2bv6a1136 Transcriptional regulator MgrA {Staphylococcus aur 84.31
d1ub9a_100 Hypothetical protein PH1061 {Archaeon Pyrococcus h 84.19
d2fbia1136 Probable transcriptional regulator PA4135 {Pseudom 84.09
d1p6ra_82 Penicillinase repressor BlaI {Bacillus licheniform 84.03
d1ku9a_151 DNA-binding protein Mj223 {Archaeon Methanococcus 83.57
d2fxaa1162 Protease production regulatory protein Hpr {Bacill 83.2
d1biaa163 Biotin repressor, N-terminal domain {Escherichia c 83.02
d3broa1135 Transcriptional regulator OEOE1854 {Oenococcus oen 82.89
d1hsja1115 Staphylococcal accessory regulator A homolog, SarR 82.69
d3deua1140 Transcriptional regulator SlyA {Salmonella typhimu 81.2
d2hr3a1145 Probable transcriptional regulator PA3067 {Pseudom 81.19
d1z6ra170 Mlc protein N-terminal domain {Escherichia coli [T 80.47
d1tw3a185 Carminomycin 4-O-methyltransferase {Streptomyces p 80.17
d1j5ya165 Putative transcriptional regulator TM1602, N-termi 80.01
>d2hyec2 a.118.17.1 (C:55-401) Cullin-4A {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cullin repeat-like
family: Cullin repeat
domain: Cullin-4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-57  Score=489.41  Aligned_cols=343  Identities=34%  Similarity=0.624  Sum_probs=323.6

Q ss_pred             ChhhHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHhhhccCCchHHHHHHHHHHHHHHHHHHHHHHHh-h-hhHHHHHH
Q 004725           21 DPKYAEKTWKILEHAIHEIYNHNASGLSFEELYRNAYNMVLHKFGEKLYSGLVTTMTFHLTEICKSIEA-A-QGGLFLEE   98 (733)
Q Consensus        21 ~~~~~~~~W~~l~~~i~~I~~~~~~~~s~~~lY~~vy~lc~~~~~~~LY~~l~~~i~~~~~~i~~~l~~-~-~~~~~L~~   98 (733)
                      |++||+++|+.|++||+.|+.+.+++.||+++|++||++|.+++|++||+++++.|.+|+...+..+.. . +++++|+.
T Consensus         1 p~~~~e~~W~~L~~ai~~I~~~~~~~~s~e~lY~~vy~lc~~~~~~~LY~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~   80 (347)
T d2hyec2           1 PDNYTQDTWRKLHEAVRAVQSSTSIRYNLEELYQAVENLCSHKVSPMLYKQLRQACEDHVQAQILPFREDSLDSVLFLKK   80 (347)
T ss_dssp             SCCTTTTHHHHHHHHHHTTSTTCCCSSCHHHHHHHHHHHCCTTTHHHHHHHHHHHHHHHHHHHHHHHTSCCCCTTHHHHH
T ss_pred             CCchHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHH
Confidence            357899999999999999999999999999999999999999999999999999999999985544422 2 34679999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhccccCCC-CCcHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcCCCCChHHH
Q 004725           99 LNRKWADHNKALQMIRDILMYMDRTFIPSTH-KTPVHELGLNLWRDVVIHSSKIQTRLQDTLLELVQRERSGEVINRGLM  177 (733)
Q Consensus        99 ~~~~W~~~~~~~~~l~~if~YLDr~yv~~~~-~~~i~~~~l~~f~~~v~~~~~l~~~l~~~il~~I~~~R~g~~i~~~~l  177 (733)
                      +...|.+|+.++.+|+++|+||||+|+.+++ .++|+++|+.+|+++++.++.+.++++++++++|+++|.|+.+|+.++
T Consensus        81 ~~~~W~~~~~~~~~l~~if~YLdr~yv~~~~~~~~i~~~~l~lf~~~v~~~~~~~~~l~~~ll~~I~~~R~g~~i~~~ll  160 (347)
T d2hyec2          81 INTCWQDHCRQMIMIRSIFLFLDRTYVLQNSTLPSIWDMGLELFRTHIISDKMVQSKTIDGILLLIERERSGEAVDRSLL  160 (347)
T ss_dssp             HHHHHHHHHHHHHHHHHHTHHHHTTTTTSCSSSCCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHTTTTTCCCCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcchhhhhcCCCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHcCCCCcHHHH
Confidence            9999999999999999999999999998754 589999999999999998778999999999999999999999999999


Q ss_pred             HHHHHHHHHhCcccchhhhhHhHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHHHH
Q 004725          178 RNITKMLMDLGSFVYQDDFEKHFLEVSADFYRLESQEFIESCDCGDYLKKAERRLNEEMERVSHYLDARSEAKITNVVEK  257 (733)
Q Consensus       178 k~ii~~l~~lg~~~Y~~~FE~~~L~~t~~yY~~~s~~~l~~~~~~~Yl~~~~~~l~~E~~r~~~~l~~~t~~~l~~~~~~  257 (733)
                      +++++|+..++  .|.+.||++||++|..||+.++..|+++.++++|+++|+.++++|.+||..|++++|.+++.+++++
T Consensus       161 ~~~~~~~~~l~--~Y~~~fE~~~l~~t~~yY~~~~~~~l~~~~~~~Yl~~v~~~l~eE~~r~~~~l~~~t~~~l~~~l~~  238 (347)
T d2hyec2         161 RSLLGMLSDLQ--VYKDSFELKFLEETNCLYAAEGQRLMQEREVPEYLNHVSKRLEEEGDRVITYLDHSTQKPLIACVEK  238 (347)
T ss_dssp             HHHHHHHHHTT--CHHHHTHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTHHHHTTTSCTTTHHHHHHHHHH
T ss_pred             HHHHHHhhhhh--HhHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhccHhHHHHHHHHHHH
Confidence            99999999996  8999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcchhhhHHhHccCcHhHHHHHHHhhccCCCChHHHHHHHHHHHHHHHhHhhcCcccCCCchHHHHHHH
Q 004725          258 EMIESHMNRLVHMENSGLVNMLVDDKYEDLGRMYCLFRRVPSGLILIRDVMTSYIRDTGKQLVSDPERLKDPVDFVQRLL  337 (733)
Q Consensus       258 ~Li~~~~~~ll~~~~~~~~~ll~~~~~~~L~~ly~l~~~~~~~l~~l~~~~~~~i~~~g~~~~~~~~~~~~~~~~i~~ll  337 (733)
                      +||.+|.+.++.   +|+..|+++++.++|++||+|+++++++++.+++.|++||++.|.+++.+..   .+.+||+.|+
T Consensus       239 ~Li~~~~~~il~---~~~~~ll~~~~~~~L~~ly~L~~r~~~~~~~l~~~f~~~i~~~G~~~v~~~~---~~~~~V~~ll  312 (347)
T d2hyec2         239 QLLGEHLTAILQ---KGLDHLLDENRVPDLAQMYQLFSRVRGGQQALLQHWSEYIKTFGTAIVINPE---KDKDMVQDLL  312 (347)
T ss_dssp             HHTTTCSHHHHH---TTHHHHHTTTCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHSCGG---GTTTHHHHHH
T ss_pred             HHHHHHHHHHHH---HHHHHHHhcccHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHHHHHhCcc---cchHHHHHHH
Confidence            999999999984   5899999999999999999999999999999999999999999999997654   3578999999


Q ss_pred             HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcC
Q 004725          338 DLKDKYDKVINSAFNNDKTFQNALNSSFEYFINL  371 (733)
Q Consensus       338 ~l~~~~~~l~~~~F~~~~~f~~~l~~af~~~ln~  371 (733)
                      +++++++.++..||++|+.|.+++++||+.|+|.
T Consensus       313 ~l~~k~~~li~~~F~~d~~f~~~l~~af~~~iNk  346 (347)
T d2hyec2         313 DFKDKVDHVIEVCFQKNERFVNLMKESFETFINK  346 (347)
T ss_dssp             HHHHHHHHHHHTTTTTCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHccC
Confidence            9999999999999999999999999999999995
>d1ldja2 a.118.17.1 (A:17-410) Cullin homolog 1, Cul-1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2hyec3 e.40.1.1 (C:403-675) Cullin-4A {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ldja3 e.40.1.1 (A:411-686) Cullin homolog 1, cul-1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ldja1 a.4.5.34 (A:687-776) Anaphase promoting complex (APC) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2hyec1 a.4.5.34 (C:676-759) Cullin-4A {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1iuya_ a.4.5.34 (A:) Cullin-3 homologue {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1mkma1 a.4.5.33 (A:1-75) Transcriptional regulator IclR, N-terminal domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1lnwa_ a.4.5.28 (A:) MexR repressor {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1z05a1 a.4.5.63 (A:10-80) Transcriptional regulator VC2007 N-terminal domain {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
>d1sfxa_ a.4.5.50 (A:) Hypothetical protein AF2008 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1lj9a_ a.4.5.28 (A:) Transcriptional regulator SlyA {Enterococcus faecalis [TaxId: 1351]} Back     information, alignment and structure
>d2a61a1 a.4.5.28 (A:5-143) Transcriptional regulator TM0710 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1dpua_ a.4.5.16 (A:) C-terminal domain of RPA32 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2etha1 a.4.5.28 (A:1-140) Putative transcriptional regulator TM0816 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1ylfa1 a.4.5.55 (A:5-142) Hypothetical protein BC1842 {Bacillus cereus [TaxId: 1396]} Back     information, alignment and structure
>d1i1ga1 a.4.5.32 (A:2-61) LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d2cfxa1 a.4.5.32 (A:1-63) Transcriptional regulator LrpC {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2d1ha1 a.4.5.50 (A:1-109) Hypothetical transcriptional regulator ST1889 {Sulfolobus tokodaii [TaxId: 111955]} Back     information, alignment and structure
>d2cg4a1 a.4.5.32 (A:4-66) Regulatory protein AsnC {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2frha1 a.4.5.28 (A:102-216) Pleiotropic regulator of virulence genes, SarA {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1z91a1 a.4.5.28 (A:8-144) Organic hydroperoxide resistance transcriptional regulator OhrR {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1p4xa2 a.4.5.28 (A:126-250) Staphylococcal accessory regulator A homolog, SarS {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d2cyya1 a.4.5.32 (A:5-64) Putative transcriptional regulator PH1519 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1p4xa1 a.4.5.28 (A:1-125) Staphylococcal accessory regulator A homolog, SarS {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1jgsa_ a.4.5.28 (A:) Multiple antibiotic resistance repressor, MarR {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1s3ja_ a.4.5.28 (A:) Putative transcriptional regulator YusO {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2bv6a1 a.4.5.28 (A:5-140) Transcriptional regulator MgrA {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1ub9a_ a.4.5.28 (A:) Hypothetical protein PH1061 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d2fbia1 a.4.5.28 (A:5-140) Probable transcriptional regulator PA4135 {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1p6ra_ a.4.5.39 (A:) Penicillinase repressor BlaI {Bacillus licheniformis [TaxId: 1402]} Back     information, alignment and structure
>d1ku9a_ a.4.5.36 (A:) DNA-binding protein Mj223 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d2fxaa1 a.4.5.28 (A:6-167) Protease production regulatory protein Hpr {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1biaa1 a.4.5.1 (A:1-63) Biotin repressor, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d3broa1 a.4.5.28 (A:3-137) Transcriptional regulator OEOE1854 {Oenococcus oeni [TaxId: 1247]} Back     information, alignment and structure
>d1hsja1 a.4.5.28 (A:373-487) Staphylococcal accessory regulator A homolog, SarR {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d3deua1 a.4.5.28 (A:2-141) Transcriptional regulator SlyA {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d2hr3a1 a.4.5.28 (A:2-146) Probable transcriptional regulator PA3067 {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1z6ra1 a.4.5.63 (A:12-81) Mlc protein N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1tw3a1 a.4.5.29 (A:14-98) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} Back     information, alignment and structure
>d1j5ya1 a.4.5.1 (A:3-67) Putative transcriptional regulator TM1602, N-terminal domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure