Citrus Sinensis ID: 004727

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730---
MRLLKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDGILCSFGMPVIKGSERYNCQVLCLNRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPFGYGFIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNHQGCDGGRLYFDGCSCVVVNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSISSFQEQASCKTKIPSVAVPYNLCQPFNLKMSLSSPLKINYHSPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQNIQARIRMVLAFMLASLLPWVHNKPGFYLVLGSSNVDEGLRGYLTKYDCSSADINPIGSISKQDLRTFLRWAATHLGYSSLAEIEAAPPTAELEPIRSNYSQLDEVDMGMTYEELSVYGRLRKVFHCGPVTMFKNLCYRWGARLTPSEVAEKVKQFFKYYSINRHKMTVLTPSYHAESYSPDDNRFDLRQFLYNARWPYQFRKIDELVKELDGEKVPFSESGDHEKMGTTLDGGGGMGVIAAGSGNPKSGH
cccEEEEEEccccccccHHHHHHHHHHHHHHHHHccccEEEccccEEcccccccccccHHHHHHHHHHHHHHHHcccccccEEEEccEEEEccEEEEEEEEEEccEEEEEEEcccccccccccccccccccccccccccccccccEEEEcccEEEEccccEEEEcccEEEEEEcccccccccccHHHHHcccEEEEEccccHHHcccHHHHHHHHHHHHHHcccEEEEEcccccccccEEEEccEEEEEcccEEEEccccccccEEEEEEEEEcHHHcccccccccHHHHccccccccEEEEEccccccccccccccccccccccccHHHHHcccccHHHHHHHHHccccEEEEccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHcccccccccccHHHHHccEEEEEEccccccHHHHHHHHHHHHHHHcccEEEEccHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccEEEEEcccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccHHHHHHcccccccccccccccccccHHHHccccccccHHHHHHHHccccHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccc
ccEEEEEEEccccEEEccHccHHHHHHHHHHHHHcccEEEEccEEEEcccccHHHcccHHHHHHHHHHHHHHHHccccccEEEEccccEEEccEEEEEEEEEEccEEEEEEEcEEccccccEEEEEcEccccccccEEEccccHHHHHHccccEcccccEEEEccccEEEEEHHHHHcccccccHHHHcccEEEEEcccccHHHHHHHHHHHHHHHHHHHHcccEEEEEccccccccEEEEcccEEEEEccEEEEEccccEcccEEEEEEEEEHHHHHHHHHHcccHHHHHcccccccEEEEEEEccccccccccccccccccccccHHHHHHcHHHHHHHHHHHcccccEEEEccccHcHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHccccccccccHHHHHccEEEEEEcccccccHHHHHHHHHHHHHHccccEEccHHHHHHHHHHHHHHHHccccEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHcHHHccccccEEEEEcccHHHHHHcHccccccccccccccccccHHHHHHHHHHHHHHcccHHHHHHHcccccccccccccccccccHHHccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccEEEEEccccccccc
MRLLKVATCNlnnwaldfdCNLKNIKESIGRAKEAgavirlgpeleitgygcedhfleLDTVTHAWECLKDLllgdwtdgilcsfgmpvikgseryncqvlclnrkiimirpklwlandgnyrELRWFTAWkqkdqledfqlpnEISVALKqksvpfgygfIQFLDTAVAAEICEelftpipphadlaLNGVEVFMnasgshhqlRKLDYRIRAFISAThsrggvymysnhqgcdggrlyfdgcscvvvngdmiaqgsqfslKDVEIVVAQVDLDAVAGFRGSISSFQeqascktkipsvavpynlcqpfnlkmslssplkinyhspeeeiafgpgcwlWDYLrrsgasgfllplsggadsssVAAIVGCMCQLVVKEISNGDEQVKADAIRighyangefptdsREFAKRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTltgkrpcykvdggsnvenlglqNIQARIRMVLAFMLASllpwvhnkpgfylvlgssnvdeglrgyltkydcssadinpigsiskQDLRTFLRWAATHlgysslaeieaapptaelepirsnysqldevdmgmTYEELSVYGRLRKvfhcgpvtmfknlcyrwgarltpsEVAEKVKQFFKYYSINrhkmtvltpsyhaesyspddnrFDLRQFLYnarwpyqfRKIDELVKEldgekvpfsesgdhekmgttldggggmgviaagsgnpksgh
MRLLKVATCnlnnwaldfdCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDGILCSFGMPVIKGSERYNCQVLCLNRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPFGYGFIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNHQGCDGGRLYFDGCSCVVVNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSISSFQEQASCKTKIPSVAVPYNLCQPFNLKMSLSSPLKINYHSPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHyangefptdsrEFAKRIFYTVFmgsenssqETRMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQNIQARIRMVLAFMLASLLPWVHNKPGFYLVLGSSNVDEGLRGYLTKYDCSSADINPIGSISKQDLRTFLRWAATHLGYSSLAEIEAAPPTAELEPIRSNYSQLDEVDMGMTYEELSVYGRLRKVFHCGPVTMFKNLCYRWGARLTPSEVAEKVKQFFKYYSINRHKMTVLTPSYHAESYSPDDNRFDLRQFLYNARWPYQFRKIDELVKELDGEkvpfsesgdhekmgttldggggMGVIAagsgnpksgh
MRLLKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDGILCSFGMPVIKGSERYNCQVLCLNRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPFGYGFIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNHQGCDGGRLYFDGCSCVVVNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSISSFQEQASCKTKIPSVAVPYNLCQPFNLKMSLSSPLKINYHSPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQNIQARIRMVLAFMLASLLPWVHNKPGFYLVLGSSNVDEGLRGYLTKYDCSSADINPIGSISKQDLRTFLRWAATHLGYSSLAEIEAAPPTAELEPIRSNYSQLDEVDMGMTYEELSVYGRLRKVFHCGPVTMFKNLCYRWGARLTPSEVAEKVKQFFKYYSINRHKMTVLTPSYHAESYSPDDNRFDLRQFLYNARWPYQFRKIDELVKELDGEKVPFSESGDHEKmgttldggggmgviaagsgNPKSGH
**LLKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDGILCSFGMPVIKGSERYNCQVLCLNRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPFGYGFIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNHQGCDGGRLYFDGCSCVVVNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSISSFQEQASCKTKIPSVAVPYNLCQPFNLKMSLSSPLKINYHSPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMG**********LAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQNIQARIRMVLAFMLASLLPWVHNKPGFYLVLGSSNVDEGLRGYLTKYDCSSADINPIGSISKQDLRTFLRWAATHLGYSSLAEIEA************NYSQLDEVDMGMTYEELSVYGRLRKVFHCGPVTMFKNLCYRWGARLTPSEVAEKVKQFFKYYSINRHKMTVLTPSYHAESYSPDDNRFDLRQFLYNARWPYQFRKIDELVKEL****************************************
MRLLKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDGILCSFGMPVIKGSERYNCQVLCLNRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPFGYGFIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNHQGCDGGRLYFDGCSCVVVNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSISSFQEQASCKTKIPSVAVPYNLCQPFNLKMSLSSPLKINYHSPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQNIQARIRMVLAFMLASLLPWVHNKPGFYLVLGSSNVDEGLRGYLTKYDCSSADINPIGSISKQDLRTFLRWAATHLGYSSLAEIEAAPPTAELEP***********DMGMTYEELSVYGRLRKVFHCGPVTMFKNLCYRWGARLTPSEVAEKVKQFFKYYSINRHKMTVLTPSYHAESYSPDDNRFDLRQFLYNARWPYQFRKIDE*********************************************
MRLLKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDGILCSFGMPVIKGSERYNCQVLCLNRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPFGYGFIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNHQGCDGGRLYFDGCSCVVVNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSISSFQEQASCKTKIPSVAVPYNLCQPFNLKMSLSSPLKINYHSPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGS***********KKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQNIQARIRMVLAFMLASLLPWVHNKPGFYLVLGSSNVDEGLRGYLTKYDCSSADINPIGSISKQDLRTFLRWAATHLGYSSLAEIEAAPPTAELEPIRSNYSQLDEVDMGMTYEELSVYGRLRKVFHCGPVTMFKNLCYRWGARLTPSEVAEKVKQFFKYYSINRHKMTVLTPSYHAESYSPDDNRFDLRQFLYNARWPYQFRKIDELVKELDGEKVPFSESGDHEKMGTTLDGGGGMGVIAAGSGNPKSGH
*RLLKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDGILCSFGMPVIKGSERYNCQVLCLNRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPFGYGFIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNHQGCDGGRLYFDGCSCVVVNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSISSFQEQASCKTKIPSVAVPYNLCQPFNLKMSLSSPLKINYHSPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQNIQARIRMVLAFMLASLLPWVHNKPGFYLVLGSSNVDEGLRGYLTKYDCSSADINPIGSISKQDLRTFLRWAATHLGYSSLAEIEAAPPTAELEPIRSNYSQLDEVDMGMTYEELSVYGRLRKVFHCGPVTMFKNLCYRWGARLTPSEVAEKVKQFFKYYSINRHKMTVLTPSYHAESYSPDDNRFDLRQFLYNARWPYQFRKIDELVKELDGE*************************************
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MRLLKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDGILCSFGMPVIKGSERYNCQVLCLNRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPFGYGFIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNHQGCDGGRLYFDGCSCVVVNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSISSFQEQASCKTKIPSVAVPYNLCQPFNLKMSLSSPLKINYHSPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQNIQARIRMVLAFMLASLLPWVHNKPGFYLVLGSSNVDEGLRGYLTKYDCSSADINPIGSISKQDLRTFLRWAATHLGYSSLAEIEAAPPTAELEPIRSNYSQLDEVDMGMTYEELSVYGRLRKVFHCGPVTMFKNLCYRWGARLTPSEVAEKVKQFFKYYSINRHKMTVLTPSYHAESYSPDDNRFDLRQFLYNARWPYQFRKIDELVKELDGEKVPFSESGDHEKMGTTLDGGGGMGVIAAGSGNPKSGH
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query733 2.2.26 [Sep-21-2011]
Q54ML1713 Glutamine-dependent NAD(+ yes no 0.935 0.962 0.556 0.0
P38795714 Glutamine-dependent NAD(+ yes no 0.948 0.973 0.542 0.0
O74940700 Putative glutamine-depend yes no 0.941 0.985 0.538 0.0
Q5ZMA6707 Glutamine-dependent NAD(+ yes no 0.959 0.994 0.533 0.0
Q711T7725 Glutamine-dependent NAD(+ yes no 0.944 0.954 0.537 0.0
Q3ZBF0706 Glutamine-dependent NAD(+ yes no 0.948 0.984 0.535 0.0
Q812E8725 Glutamine-dependent NAD(+ yes no 0.944 0.954 0.527 0.0
Q6IA69706 Glutamine-dependent NAD(+ yes no 0.944 0.980 0.527 0.0
Q4R5Y2706 Glutamine-dependent NAD(+ N/A no 0.944 0.980 0.527 0.0
Q9VYA0787 Probable glutamine-depend yes no 0.952 0.886 0.496 0.0
>sp|Q54ML1|NADE_DICDI Glutamine-dependent NAD(+) synthetase OS=Dictyostelium discoideum GN=nadsyn1 PE=3 SV=1 Back     alignment and function desciption
 Score =  798 bits (2062), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/699 (55%), Positives = 486/699 (69%), Gaps = 13/699 (1%)

Query: 1   MRLLKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELD 60
           M+ + +ATCNLN WA+DF  NL+ I ESI  AK  GA  RLGPELEI GYGCEDHFLE D
Sbjct: 1   MKTVTLATCNLNQWAMDFKGNLERIIESINIAKSKGAKYRLGPELEICGYGCEDHFLEQD 60

Query: 61  TVTHAWECLKDLLLG-DWTDGILCSFGMPVIKGSERYNCQVLCLNRKIIMIRPKLWLAND 119
           T+ H W+ L  +L   + T  IL   GMPV+    RYNC+V+ LN+KI +I+PK  +A D
Sbjct: 61  TMLHCWQSLAVILKDPELTKDILVDVGMPVLHKDVRYNCRVILLNQKIYLIQPKKAMAMD 120

Query: 120 GNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPFGYGFIQFLDTAVAAEICEELFT 179
           GNYRE RWFT W +   +E F LP  IS    Q     G   I  LDTA+++E CEELFT
Sbjct: 121 GNYREGRWFTPWIKPRVVETFYLPRIISQITGQDECQIGDAIISTLDTAISSETCEELFT 180

Query: 180 PIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNHQGCDGGRL 239
           P  PH  + L+GVE+F N SGSHHQLRKLD R+    SAT   GG+Y+YSN QGCDG RL
Sbjct: 181 PNSPHIQMGLDGVEIFTNGSGSHHQLRKLDTRVDLIRSATSKSGGIYLYSNQQGCDGSRL 240

Query: 240 YFDGCSCVVVNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSISSFQEQASCKTKIPS 299
           Y+DG   +++NGD ++QGSQFSL D+E++ A VDL+ V   R S  +   QA+   + P 
Sbjct: 241 YYDGSCMIMINGDCVSQGSQFSLVDIEVITATVDLEDVRSVRASFMARCAQANLTKEFPR 300

Query: 300 VAVPYNL-----CQPFNLKMSLSSPLKINYHSPEEEIAFGPGCWLWDYLRRSGASGFLLP 354
           V  P  L     C P +        + INY++P EEI FGP CWLWDYLRRSG SG+ LP
Sbjct: 301 VRCPIQLTHIDYCHPPD------RVIHINYNTPAEEIGFGPACWLWDYLRRSGLSGYFLP 354

Query: 355 LSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFY 414
           LSGGADS++ AAI+G MCQLV+ ++S G++QV  DA RI +      PTDSREFA R+F+
Sbjct: 355 LSGGADSAATAAIIGIMCQLVILDVSKGNKQVLKDAQRITNSPEDYIPTDSREFASRLFF 414

Query: 415 TVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGS 474
           T ++GS+NSS+ETR  A ++A +IGS H +V ID +  +F   F  +T K+P ++  GG+
Sbjct: 415 TAYLGSKNSSKETRDRAMEIAKDIGSVHKEVDIDDISQSFNDAFSQITKKQPQFRAHGGT 474

Query: 475 NVENLGLQNIQARIRMVLAFMLASLLPWVHNKPGFYLVLGSSNVDEGLRGYLTKYDCSSA 534
             ENL LQN+QAR RMVL++ LASLL W   +PG  LVLGS+N DE LRGY+TKYDCSSA
Sbjct: 475 PRENLALQNVQARTRMVLSYHLASLLLWEQGRPGSLLVLGSANCDESLRGYMTKYDCSSA 534

Query: 535 DINPIGSISKQDLRTFLRWAATHLGYSSLAEIEAAPPTAELEPIRSNYSQLDEVDMGMTY 594
           DINPIG +SK DLR+F+ WA       S+  +  A PTAELEPI  NY+Q DE+DMGMTY
Sbjct: 535 DINPIGGMSKIDLRSFIEWAGKFRDMKSILSVLTATPTAELEPITENYTQSDEIDMGMTY 594

Query: 595 EELSVYGRLRKVFHCGPVTMFKNLCYRWGARLTPSEVAEKVKQFFKYYSINRHKMTVLTP 654
           EELS++G+LRKV  CGPV+MF+ L   W A L PS VAEKVK+FF YY+INRHK+T LTP
Sbjct: 595 EELSIFGKLRKVNRCGPVSMFERLVADW-AHLEPSVVAEKVKRFFYYYAINRHKLTTLTP 653

Query: 655 SYHAESYSPDDNRFDLRQFLYNARWPYQFRKIDELVKEL 693
           SYHAE YSPDDNR+D RQFLYN++W  QF  ID++V  L
Sbjct: 654 SYHAEGYSPDDNRYDHRQFLYNSKWDVQFETIDKIVLRL 692

Dictyostelium discoideum (taxid: 44689)
EC: 6EC: .EC: 3EC: .EC: 5EC: .EC: 1
>sp|P38795|NADE_YEAST Glutamine-dependent NAD(+) synthetase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=QNS1 PE=1 SV=1 Back     alignment and function description
>sp|O74940|NADE_SCHPO Putative glutamine-dependent NAD(+) synthetase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC553.02 PE=3 SV=1 Back     alignment and function description
>sp|Q5ZMA6|NADE_CHICK Glutamine-dependent NAD(+) synthetase OS=Gallus gallus GN=NADSYN1 PE=2 SV=1 Back     alignment and function description
>sp|Q711T7|NADE_MOUSE Glutamine-dependent NAD(+) synthetase OS=Mus musculus GN=Nadsyn1 PE=2 SV=1 Back     alignment and function description
>sp|Q3ZBF0|NADE_BOVIN Glutamine-dependent NAD(+) synthetase OS=Bos taurus GN=NADSYN1 PE=2 SV=1 Back     alignment and function description
>sp|Q812E8|NADE_RAT Glutamine-dependent NAD(+) synthetase OS=Rattus norvegicus GN=Nadsyn1 PE=2 SV=1 Back     alignment and function description
>sp|Q6IA69|NADE_HUMAN Glutamine-dependent NAD(+) synthetase OS=Homo sapiens GN=NADSYN1 PE=1 SV=3 Back     alignment and function description
>sp|Q4R5Y2|NADE_MACFA Glutamine-dependent NAD(+) synthetase OS=Macaca fascicularis GN=NADSYN1 PE=2 SV=1 Back     alignment and function description
>sp|Q9VYA0|NADE_DROME Probable glutamine-dependent NAD(+) synthetase OS=Drosophila melanogaster GN=CG9940 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query733
224053749730 predicted protein [Populus trichocarpa] 0.994 0.998 0.863 0.0
224075164730 predicted protein [Populus trichocarpa] 0.994 0.998 0.866 0.0
356523661731 PREDICTED: glutamine-dependent NAD(+) sy 0.995 0.998 0.862 0.0
356513255731 PREDICTED: glutamine-dependent NAD(+) sy 0.995 0.998 0.856 0.0
449452230720 PREDICTED: glutamine-dependent NAD(+) sy 0.980 0.998 0.855 0.0
449524932720 PREDICTED: LOW QUALITY PROTEIN: glutamin 0.980 0.998 0.853 0.0
15221990725 NAD synthetase [Arabidopsis thaliana] gi 0.987 0.998 0.815 0.0
297847854725 carbon-nitrogen hydrolase family protein 0.987 0.998 0.814 0.0
225426228724 PREDICTED: glutamine-dependent NAD(+) sy 0.952 0.964 0.855 0.0
255555661665 glutamine-dependent NAD(+) synthetase, p 0.901 0.993 0.850 0.0
>gi|224053749|ref|XP_002297960.1| predicted protein [Populus trichocarpa] gi|222845218|gb|EEE82765.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score = 1343 bits (3476), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 632/732 (86%), Positives = 683/732 (93%), Gaps = 3/732 (0%)

Query: 1   MRLLKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELD 60
           MRLLKVATCNLN WA+DFDCNLKNIKESI +AK+AGAVIRLGPELEITGYGCEDHFLELD
Sbjct: 1   MRLLKVATCNLNQWAMDFDCNLKNIKESITQAKQAGAVIRLGPELEITGYGCEDHFLELD 60

Query: 61  TVTHAWECLKDLLLGDWTDGILCSFGMPVIKGSERYNCQVLCLNRKIIMIRPKLWLANDG 120
           T+ H WECLK++L+GDWTDGILCS GMPVIKGSERYNCQVLC NRKIIMIRPK+WLANDG
Sbjct: 61  TINHGWECLKEILVGDWTDGILCSIGMPVIKGSERYNCQVLCFNRKIIMIRPKMWLANDG 120

Query: 121 NYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPFGYGFIQFLDTAVAAEICEELFTP 180
           NYRELRWFTAWK KDQL DFQLP+EI+ A+ QKSV FGYG++QFLDTAVAAE+CEELFTP
Sbjct: 121 NYRELRWFTAWKHKDQLVDFQLPSEIAEAISQKSVHFGYGYVQFLDTAVAAEVCEELFTP 180

Query: 181 IPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNHQGCDGGRLY 240
           IPPHA+LALNGVEVFMNASGSHHQLRKLD R+RAFI ATH+ GGVYMYSNHQGCDGGRLY
Sbjct: 181 IPPHAELALNGVEVFMNASGSHHQLRKLDVRLRAFIGATHTCGGVYMYSNHQGCDGGRLY 240

Query: 241 FDGCSCVVVNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSISSFQEQASCKTKIPSV 300
           +DGCSCVVVNG+++AQGSQFSL+D E+V+AQVDLDAVA  RGSISSFQEQAS K  + SV
Sbjct: 241 YDGCSCVVVNGEVVAQGSQFSLRDSEVVLAQVDLDAVASLRGSISSFQEQASYKNTVSSV 300

Query: 301 AVPYNLCQPFNLKMSLSSPLKINYHSPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGAD 360
            VPY LCQPF+++MSLSSPLKINYHSPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGAD
Sbjct: 301 LVPYKLCQPFSMQMSLSSPLKINYHSPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGAD 360

Query: 361 SSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGS 420
           SSSVAAIVGCMCQLVVKEI NGDEQVKADAIRIG+Y +G+FPTDS+EFAKRIFYTVFMGS
Sbjct: 361 SSSVAAIVGCMCQLVVKEIDNGDEQVKADAIRIGNYTDGQFPTDSKEFAKRIFYTVFMGS 420

Query: 421 ENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLG 480
           ENSS++T+  AK+LADEIGSWHLDVSID VVSA LSLFQTLTGKRP YKVDGGSN+ENLG
Sbjct: 421 ENSSEDTKKRAKELADEIGSWHLDVSIDGVVSALLSLFQTLTGKRPRYKVDGGSNIENLG 480

Query: 481 LQNIQARIRMVLAFMLASLLPWVHNKPGFYLVLGSSNVDEGLRGYLTKYDCSSADINPIG 540
           LQNIQARIRMVLAFMLASLLPWVH+KPGFYLVLGSSNVDEGLRGYLTKYDCSSADINPIG
Sbjct: 481 LQNIQARIRMVLAFMLASLLPWVHSKPGFYLVLGSSNVDEGLRGYLTKYDCSSADINPIG 540

Query: 541 SISKQDLRTFLRWAATHLGYSSLAEIEAAPPTAELEPIRSNYSQLDEVDMGMTYEELSVY 600
           SISKQDLR FLRWAA HLGYSSLAEIEAAPPTAELEPIRSNYSQLDEVDMGMTYEELSVY
Sbjct: 541 SISKQDLRAFLRWAAIHLGYSSLAEIEAAPPTAELEPIRSNYSQLDEVDMGMTYEELSVY 600

Query: 601 GRLRKVFHCGPVTMFKNLCYRWGARLTPSEVAEKVKQFFKYYSINRHKMTVLTPSYHAES 660
           GRLRK+F CGPV+MFKNLCYRWG+RL+P EVA+KVK FFKYYSINRHKMTVLTPSYHAES
Sbjct: 601 GRLRKIFRCGPVSMFKNLCYRWGSRLSPLEVADKVKHFFKYYSINRHKMTVLTPSYHAES 660

Query: 661 YSPDDNRFDLRQFLYNARWPYQFRKIDELVKELDGEKVPFSESGDHEKMGTTLDGGGGMG 720
           YSP+DNRFDLRQFLYNARWPYQFRK+DELVKELDG +V   E+ D +K       G GMG
Sbjct: 661 YSPEDNRFDLRQFLYNARWPYQFRKMDELVKELDGNEVALGETRDEDKSRVN---GVGMG 717

Query: 721 VIAAGSGNPKSG 732
           ++AAGSG+PKSG
Sbjct: 718 IVAAGSGDPKSG 729

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224075164|ref|XP_002304569.1| predicted protein [Populus trichocarpa] gi|222842001|gb|EEE79548.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356523661|ref|XP_003530455.1| PREDICTED: glutamine-dependent NAD(+) synthetase-like [Glycine max] Back     alignment and taxonomy information
>gi|356513255|ref|XP_003525329.1| PREDICTED: glutamine-dependent NAD(+) synthetase-like [Glycine max] Back     alignment and taxonomy information
>gi|449452230|ref|XP_004143863.1| PREDICTED: glutamine-dependent NAD(+) synthetase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449524932|ref|XP_004169475.1| PREDICTED: LOW QUALITY PROTEIN: glutamine-dependent NAD(+) synthetase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|15221990|ref|NP_175906.1| NAD synthetase [Arabidopsis thaliana] gi|12321572|gb|AAG50835.1|AC073944_2 hypothetical protein [Arabidopsis thaliana] gi|38564264|gb|AAR23711.1| At1g55090 [Arabidopsis thaliana] gi|110736541|dbj|BAF00237.1| hypothetical protein [Arabidopsis thaliana] gi|332195063|gb|AEE33184.1| NAD synthetase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297847854|ref|XP_002891808.1| carbon-nitrogen hydrolase family protein [Arabidopsis lyrata subsp. lyrata] gi|297337650|gb|EFH68067.1| carbon-nitrogen hydrolase family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|225426228|ref|XP_002263774.1| PREDICTED: glutamine-dependent NAD(+) synthetase [Vitis vinifera] gi|297742398|emb|CBI34547.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255555661|ref|XP_002518866.1| glutamine-dependent NAD(+) synthetase, putative [Ricinus communis] gi|223541853|gb|EEF43399.1| glutamine-dependent NAD(+) synthetase, putative [Ricinus communis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q5ZMA6NADE_CHICK6, ., 3, ., 5, ., 10.53390.95900.9943yesno
Q4R5Y2NADE_MACFA6, ., 3, ., 5, ., 10.52730.94400.9801N/Ano
Q711T7NADE_MOUSE6, ., 3, ., 5, ., 10.53740.94400.9544yesno
O74940NADE_SCHPO6, ., 3, ., 5, ., 10.53840.94130.9857yesno
Q9VYA0NADE_DROME6, ., 3, ., 5, ., 10.49640.95220.8869yesno
P38795NADE_YEAST6, ., 3, ., 5, ., 10.54200.94810.9733yesno
Q3ZBF0NADE_BOVIN6, ., 3, ., 5, ., 10.53510.94810.9844yesno
Q54ML1NADE_DICDI6, ., 3, ., 5, ., 10.55650.93580.9621yesno
Q6IA69NADE_HUMAN6, ., 3, ., 5, ., 10.52730.94400.9801yesno
Q812E8NADE_RAT6, ., 3, ., 5, ., 10.52730.94400.9544yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer6.3.5.10.946
3rd Layer6.3.50.963

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh4_pg.C_LG_I000769
NAD+ synthase (glutamine-hydrolysing) (EC-6.3.5.1) (730 aa)
(Populus trichocarpa)
Predicted Functional Partners:
fgenesh4_pm.C_scaffold_308000002
nicotinamide-nucleotide adenylyltransferase/nicotinate-nucleotide adenylyltransferase (EC-2.7.7 [...] (247 aa)
     •• 0.917
gw1.XIII.983.1
nicotinamide-nucleotide adenylyltransferase/nicotinate-nucleotide adenylyltransferase (EC-2.7.7 [...] (237 aa)
     •• 0.916
gw1.70.673.1
nicotinamide-nucleotide adenylyltransferase/nicotinate-nucleotide adenylyltransferase (EC-2.7.7 [...] (237 aa)
     •• 0.916
gw1.IX.3597.1
NADH kinase/NAD kinase (EC-2.7.1.86) (520 aa)
     •  0.910
gw1.I.1484.1
NADH kinase/NAD kinase (EC-2.7.1.86) (520 aa)
     •  0.909
grail3.0151001701
hypothetical protein (395 aa)
     •  0.899
fgenesh4_pg.C_scaffold_145000062
hypothetical protein (414 aa)
     •  0.899

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query733
PLN02339700 PLN02339, PLN02339, NAD+ synthase (glutamine-hydro 0.0
cd00553248 cd00553, NAD_synthase, NAD+ synthase is a homodime 5e-88
cd07570261 cd07570, GAT_Gln-NAD-synth, Glutamine aminotransfe 1e-87
COG0171268 COG0171, NadE, NAD synthase [Coenzyme metabolism] 2e-43
pfam02540242 pfam02540, NAD_synthase, NAD synthase 1e-33
PRK02628679 PRK02628, nadE, NAD synthetase; Reviewed 2e-31
TIGR00552250 TIGR00552, nadE, NAD+ synthetase 6e-30
PRK13981540 PRK13981, PRK13981, NAD synthetase; Provisional 4e-28
COG0388274 COG0388, COG0388, Predicted amidohydrolase [Genera 1e-27
PRK13980265 PRK13980, PRK13980, NAD synthetase; Provisional 1e-24
pfam00795172 pfam00795, CN_hydrolase, Carbon-nitrogen hydrolase 7e-19
cd07586269 cd07586, nitrilase_8, Uncharacterized subgroup of 2e-11
cd07197253 cd07197, nitrilase, Nitrilase superfamily, includi 8e-10
PRK00768268 PRK00768, nadE, NAD synthetase; Reviewed 7e-08
PRK00768268 PRK00768, nadE, NAD synthetase; Reviewed 6e-05
PRK00876326 PRK00876, nadE, NAD synthetase; Reviewed 2e-04
cd07585261 cd07585, nitrilase_7, Uncharacterized subgroup of 0.001
>gnl|CDD|177973 PLN02339, PLN02339, NAD+ synthase (glutamine-hydrolysing) Back     alignment and domain information 
 Score = 1489 bits (3856), Expect = 0.0
 Identities = 562/698 (80%), Positives = 613/698 (87%)

Query: 1   MRLLKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELD 60
           MRLLKVATCNLN WA+DFD NLK IKESI  AK AGAV R+GPELEITGYGCEDHFLELD
Sbjct: 1   MRLLKVATCNLNQWAMDFDGNLKRIKESIAEAKAAGAVYRVGPELEITGYGCEDHFLELD 60

Query: 61  TVTHAWECLKDLLLGDWTDGILCSFGMPVIKGSERYNCQVLCLNRKIIMIRPKLWLANDG 120
           TVTH+WECL ++L+GD TDGILC  GMPVI G  RYNC+V CLNRKI++IRPK+WLANDG
Sbjct: 61  TVTHSWECLAEILVGDLTDGILCDIGMPVIHGGVRYNCRVFCLNRKILLIRPKMWLANDG 120

Query: 121 NYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPFGYGFIQFLDTAVAAEICEELFTP 180
           NYRELRWFTAWK K ++EDFQLP EI+ A  QKSVPFG G++QFLDTAVAAE CEELFTP
Sbjct: 121 NYRELRWFTAWKHKKKVEDFQLPEEIAEATSQKSVPFGDGYLQFLDTAVAAETCEELFTP 180

Query: 181 IPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNHQGCDGGRLY 240
             PH DLALNGVE+  N SGSHHQLRKL+ R+    SATH  GGVY+Y+N +GCDGGRLY
Sbjct: 181 QAPHIDLALNGVEIISNGSGSHHQLRKLNTRLDLIRSATHKCGGVYLYANQRGCDGGRLY 240

Query: 241 FDGCSCVVVNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSISSFQEQASCKTKIPSV 300
           +DGC+C+VVNG+++AQGSQFSL+DVE+V A VDLDAV  FRGSISSF+EQAS K ++PSV
Sbjct: 241 YDGCACIVVNGEVVAQGSQFSLQDVEVVTACVDLDAVVSFRGSISSFREQASSKKRVPSV 300

Query: 301 AVPYNLCQPFNLKMSLSSPLKINYHSPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGAD 360
           AVP+ LC PF+L +  SSPLKI YHSPEEEIA GP CWLWDYLRRSGASGFLLPLSGGAD
Sbjct: 301 AVPFKLCPPFSLSLVPSSPLKIRYHSPEEEIALGPACWLWDYLRRSGASGFLLPLSGGAD 360

Query: 361 SSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGS 420
           SSSVAAIVG MCQLVVK I  GDEQVKADA RIG+YA+GE PTDS+EFAKRIFYTV+MGS
Sbjct: 361 SSSVAAIVGSMCQLVVKAIREGDEQVKADARRIGNYADGEVPTDSKEFAKRIFYTVYMGS 420

Query: 421 ENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLG 480
           ENSS+ETR  AK+LADEIGS HLDV ID VVSA LSLFQTLTGKRP YKVDGGSN ENL 
Sbjct: 421 ENSSEETRSRAKQLADEIGSSHLDVKIDGVVSAVLSLFQTLTGKRPRYKVDGGSNAENLA 480

Query: 481 LQNIQARIRMVLAFMLASLLPWVHNKPGFYLVLGSSNVDEGLRGYLTKYDCSSADINPIG 540
           LQNIQARIRMVLAFMLASLLPWV  K GF LVLGS+NVDEGLRGYLTKYDCSSADINPIG
Sbjct: 481 LQNIQARIRMVLAFMLASLLPWVRGKSGFLLVLGSANVDEGLRGYLTKYDCSSADINPIG 540

Query: 541 SISKQDLRTFLRWAATHLGYSSLAEIEAAPPTAELEPIRSNYSQLDEVDMGMTYEELSVY 600
            ISKQDLR+FLRWAAT+LGY SLAE+EAAPPTAELEPIR +YSQ DE DMGMTYEEL VY
Sbjct: 541 GISKQDLRSFLRWAATNLGYPSLAEVEAAPPTAELEPIRDDYSQTDEEDMGMTYEELGVY 600

Query: 601 GRLRKVFHCGPVTMFKNLCYRWGARLTPSEVAEKVKQFFKYYSINRHKMTVLTPSYHAES 660
           GRLRK+F CGPV+MFKNLC+ W  RL+PSEVA KVK FFKYYSINRHKMT LTPSYHAES
Sbjct: 601 GRLRKIFRCGPVSMFKNLCHEWNGRLSPSEVAAKVKDFFKYYSINRHKMTTLTPSYHAES 660

Query: 661 YSPDDNRFDLRQFLYNARWPYQFRKIDELVKELDGEKV 698
           YSPDDNRFDLRQFLYN RWPYQFRKIDELV+ELDGE V
Sbjct: 661 YSPDDNRFDLRQFLYNTRWPYQFRKIDELVEELDGETV 698

Length = 700
>gnl|CDD|238309 cd00553, NAD_synthase, NAD+ synthase is a homodimer, which catalyzes the final step in de novo nicotinamide adenine dinucleotide (NAD+) biosynthesis, an amide transfer from either ammonia or glutamine to nicotinic acid adenine dinucleotide (NaAD) Back     alignment and domain information
>gnl|CDD|143594 cd07570, GAT_Gln-NAD-synth, Glutamine aminotransferase (GAT, glutaminase) domain of glutamine-dependent NAD synthetases (class 7 and 8 nitrilases) Back     alignment and domain information
>gnl|CDD|223249 COG0171, NadE, NAD synthase [Coenzyme metabolism] Back     alignment and domain information
>gnl|CDD|217093 pfam02540, NAD_synthase, NAD synthase Back     alignment and domain information
>gnl|CDD|235057 PRK02628, nadE, NAD synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|233019 TIGR00552, nadE, NAD+ synthetase Back     alignment and domain information
>gnl|CDD|237577 PRK13981, PRK13981, NAD synthetase; Provisional Back     alignment and domain information
>gnl|CDD|223465 COG0388, COG0388, Predicted amidohydrolase [General function prediction only] Back     alignment and domain information
>gnl|CDD|184435 PRK13980, PRK13980, NAD synthetase; Provisional Back     alignment and domain information
>gnl|CDD|216124 pfam00795, CN_hydrolase, Carbon-nitrogen hydrolase Back     alignment and domain information
>gnl|CDD|143610 cd07586, nitrilase_8, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>gnl|CDD|143587 cd07197, nitrilase, Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes Back     alignment and domain information
>gnl|CDD|234831 PRK00768, nadE, NAD synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|234831 PRK00768, nadE, NAD synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|179150 PRK00876, nadE, NAD synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|143609 cd07585, nitrilase_7, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 733
KOG2303706 consensus Predicted NAD synthase, contains CN hydr 100.0
PLN02339700 NAD+ synthase (glutamine-hydrolysing) 100.0
PRK02628679 nadE NAD synthetase; Reviewed 100.0
PRK13981540 NAD synthetase; Provisional 100.0
PF02540242 NAD_synthase: NAD synthase; InterPro: IPR022310 NA 100.0
COG0171268 NadE NAD synthase [Coenzyme metabolism] 100.0
PRK00768268 nadE NAD synthetase; Reviewed 100.0
PRK13980265 NAD synthetase; Provisional 100.0
PRK00876326 nadE NAD synthetase; Reviewed 100.0
cd00553248 NAD_synthase NAD+ synthase is a homodimer, which c 100.0
PTZ00323294 NAD+ synthase; Provisional 100.0
cd07570261 GAT_Gln-NAD-synth Glutamine aminotransferase (GAT, 100.0
cd07586269 nitrilase_8 Uncharacterized subgroup of the nitril 100.0
TIGR03381279 agmatine_aguB N-carbamoylputrescine amidase. Membe 100.0
cd07576254 R-amidase_like Pseudomonas sp. MCI3434 R-amidase a 100.0
cd07587363 ML_beta-AS mammalian-like beta-alanine synthase (b 100.0
COG0388274 Predicted amidohydrolase [General function predict 100.0
PRK10438256 C-N hydrolase family amidase; Provisional 100.0
cd07568287 ML_beta-AS_like mammalian-like beta-alanine syntha 100.0
TIGR00552250 nadE NAD+ synthetase. NAD+ synthetase is a nearly 100.0
cd07572265 nit Nit1, Nit 2, and related proteins, and the Nit 100.0
cd07569302 DCase N-carbamyl-D-amino acid amidohydrolase (DCas 100.0
cd07580268 nitrilase_2 Uncharacterized subgroup of the nitril 100.0
cd07573284 CPA N-carbamoylputrescine amidohydrolase (CPA) (cl 100.0
PLN02747296 N-carbamolyputrescine amidase 100.0
cd07583253 nitrilase_5 Uncharacterized subgroup of the nitril 100.0
PLN00202405 beta-ureidopropionase 100.0
cd07585261 nitrilase_7 Uncharacterized subgroup of the nitril 100.0
cd07584258 nitrilase_6 Uncharacterized subgroup of the nitril 100.0
cd07581255 nitrilase_3 Uncharacterized subgroup of the nitril 100.0
cd07579279 nitrilase_1_R2 Second nitrilase domain of an uncha 100.0
cd07578258 nitrilase_1_R1 First nitrilase domain of an unchar 100.0
cd07564297 nitrilases_CHs Nitrilases, cyanide hydratase (CH)s 100.0
cd07565291 aliphatic_amidase aliphatic amidases (class 2 nitr 100.0
PLN02798286 nitrilase 100.0
cd07575252 Xc-1258_like Xanthomonas campestris XC1258 and rel 100.0
PLN02504346 nitrilase 100.0
cd07567299 biotinidase_like biotinidase and vanins (class 4 n 100.0
cd07577259 Ph0642_like Pyrococcus horikoshii Ph0642 and relat 100.0
cd07197253 nitrilase Nitrilase superfamily, including nitrile 100.0
cd07582294 nitrilase_4 Uncharacterized subgroup of the nitril 100.0
cd07574280 nitrilase_Rim1_like Uncharacterized subgroup of th 100.0
PRK13287333 amiF formamidase; Provisional 100.0
PRK13286345 amiE acylamide amidohydrolase; Provisional 100.0
cd07571270 ALP_N-acyl_transferase Apolipoprotein N-acyl trans 100.0
cd07566295 ScNTA1_like Saccharomyces cerevisiae N-terminal am 99.97
KOG0807295 consensus Carbon-nitrogen hydrolase [Amino acid tr 99.97
PF00795186 CN_hydrolase: Carbon-nitrogen hydrolase The Prosit 99.94
KOG0806298 consensus Carbon-nitrogen hydrolase [Amino acid tr 99.94
PRK00302505 lnt apolipoprotein N-acyltransferase; Reviewed 99.92
TIGR00546391 lnt apolipoprotein N-acyltransferase. This enzyme 99.91
KOG0805337 consensus Carbon-nitrogen hydrolase [Amino acid tr 99.9
KOG0808387 consensus Carbon-nitrogen hydrolase [Amino acid tr 99.88
PRK12291418 apolipoprotein N-acyltransferase; Reviewed 99.83
PRK13825388 conjugal transfer protein TraB; Provisional 99.65
PF03054356 tRNA_Me_trans: tRNA methyl transferase; InterPro: 99.63
TIGR00268252 conserved hypothetical protein TIGR00268. The N-te 99.62
COG0815518 Lnt Apolipoprotein N-acyltransferase [Cell envelop 99.62
COG1606269 ATP-utilizing enzymes of the PP-loop superfamily [ 99.62
COG0482356 TrmU Predicted tRNA(5-methylaminomethyl-2-thiourid 99.57
PRK14665360 mnmA tRNA-specific 2-thiouridylase MnmA; Provision 99.42
TIGR00884311 guaA_Cterm GMP synthase (glutamine-hydrolyzing), C 99.4
KOG2805377 consensus tRNA (5-methylaminomethyl-2-thiouridylat 99.39
PRK14664362 tRNA-specific 2-thiouridylase MnmA; Provisional 99.38
cd01998349 tRNA_Me_trans tRNA methyl transferase. This family 99.36
PRK00143346 mnmA tRNA-specific 2-thiouridylase MnmA; Reviewed 99.35
PLN02347536 GMP synthetase 99.35
cd01997295 GMP_synthase_C The C-terminal domain of GMP synthe 99.33
PRK00919307 GMP synthase subunit B; Validated 99.32
TIGR00420352 trmU tRNA (5-methylaminomethyl-2-thiouridylate)-me 99.31
cd01990202 Alpha_ANH_like_I This is a subfamily of Adenine nu 99.28
PRK01565394 thiamine biosynthesis protein ThiI; Provisional 99.2
PRK00074511 guaA GMP synthase; Reviewed 99.13
cd01993185 Alpha_ANH_like_II This is a subfamily of Adenine n 99.04
PRK11106231 queuosine biosynthesis protein QueC; Provisional 99.03
TIGR02432189 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-t 99.01
COG0603222 Predicted PP-loop superfamily ATPase [General func 99.0
PRK04527400 argininosuccinate synthase; Provisional 98.85
PRK00509399 argininosuccinate synthase; Provisional 98.82
PF06508209 QueC: Queuosine biosynthesis protein QueC; InterPr 98.81
COG0519315 GuaA GMP synthase, PP-ATPase domain/subunit [Nucle 98.81
cd01996154 Alpha_ANH_like_III This is a subfamily of Adenine 98.75
PRK13820394 argininosuccinate synthase; Provisional 98.74
TIGR00364201 exsB protein. This protein family is represented b 98.72
PRK08349198 hypothetical protein; Validated 98.69
cd01992185 PP-ATPase N-terminal domain of predicted ATPase of 98.65
PRK14561194 hypothetical protein; Provisional 98.6
cd01712177 ThiI ThiI is required for thiazole synthesis in th 98.58
TIGR03573343 WbuX N-acetyl sugar amidotransferase. This enzyme 98.55
PLN00200404 argininosuccinate synthase; Provisional 98.55
TIGR00342371 thiazole biosynthesis/tRNA modification protein Th 98.53
cd01999385 Argininosuccinate_Synthase Argininosuccinate synth 98.47
TIGR00032394 argG argininosuccinate synthase. argG in bacteria, 98.44
PRK08384381 thiamine biosynthesis protein ThiI; Provisional 98.43
cd01713173 PAPS_reductase This domain is found in phosphoaden 98.38
PRK02628679 nadE NAD synthetase; Reviewed 98.36
cd01991269 Asn_Synthase_B_C The C-terminal domain of Asparagi 98.12
KOG0571543 consensus Asparagine synthase (glutamine-hydrolyzi 98.04
KOG1622552 consensus GMP synthase [Nucleotide transport and m 98.04
cd01995169 ExsB ExsB is a transcription regulator related pro 98.04
PRK10696258 tRNA 2-thiocytidine biosynthesis protein TtcA; Pro 97.98
PF01171182 ATP_bind_3: PP-loop family; InterPro: IPR011063 Th 97.9
PF02568197 ThiI: Thiamine biosynthesis protein (ThiI); InterP 97.87
TIGR01536467 asn_synth_AEB asparagine synthase (glutamine-hydro 97.85
PF00733255 Asn_synthase: Asparagine synthase; InterPro: IPR00 97.84
PRK08576438 hypothetical protein; Provisional 97.83
PTZ00077586 asparagine synthetase-like protein; Provisional 97.79
PLN02549578 asparagine synthase (glutamine-hydrolyzing) 97.78
PRK09431554 asnB asparagine synthetase B; Provisional 97.72
PRK05253301 sulfate adenylyltransferase subunit 2; Provisional 97.64
TIGR03108628 eps_aminotran_1 exosortase 1 system-associated ami 97.64
cd01994194 Alpha_ANH_like_IV This is a subfamily of Adenine n 97.6
TIGR03104589 trio_amidotrans asparagine synthase family amidotr 97.59
PRK01269482 tRNA s(4)U8 sulfurtransferase; Provisional 97.59
PRK10660436 tilS tRNA(Ile)-lysidine synthetase; Provisional 97.56
COG0037298 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle 97.42
COG1365255 Predicted ATPase (PP-loop superfamily) [General fu 97.38
COG0367542 AsnB Asparagine synthase (glutamine-hydrolyzing) [ 97.37
PRK13794479 hypothetical protein; Provisional 97.18
PRK13795636 hypothetical protein; Provisional 97.1
TIGR03679218 arCOG00187 arCOG00187 universal archaeal metal-bin 97.09
PRK02090241 phosphoadenosine phosphosulfate reductase; Provisi 96.99
PF01507174 PAPS_reduct: Phosphoadenosine phosphosulfate reduc 96.98
COG0301383 ThiI Thiamine biosynthesis ATP pyrophosphatase [Co 96.98
PRK08557417 hypothetical protein; Provisional 96.66
cd01986103 Alpha_ANH_like Adenine nucleotide alpha hydrolases 96.55
TIGR02039294 CysD sulfate adenylyltransferase, small subunit. I 96.39
COG2117198 Predicted subunit of tRNA(5-methylaminomethyl-2-th 96.31
TIGR00434212 cysH phosophoadenylyl-sulfate reductase (thioredox 95.93
PRK05370447 argininosuccinate synthase; Validated 95.8
COG0137403 ArgG Argininosuccinate synthase [Amino acid transp 95.59
PRK12563312 sulfate adenylyltransferase subunit 2; Provisional 95.48
PF00764388 Arginosuc_synth: Arginosuccinate synthase; InterPr 95.48
TIGR00289222 conserved hypothetical protein TIGR00289. Homologo 95.17
COG0175261 CysH 3'-phosphoadenosine 5'-phosphosulfate sulfotr 93.76
TIGR02057226 PAPS_reductase phosphoadenosine phosphosulfate red 92.79
cd0198486 AANH_like Adenine nucleotide alpha hydrolases supe 90.68
KOG1706412 consensus Argininosuccinate synthase [Amino acid t 89.21
COG2102223 Predicted ATPases of PP-loop superfamily [General 88.04
TIGR00290223 MJ0570_dom MJ0570-related uncharacterized domain. 86.46
TIGR03183447 DNA_S_dndC putative sulfurtransferase DndC. Member 86.28
PRK06850507 hypothetical protein; Provisional 85.33
>KOG2303 consensus Predicted NAD synthase, contains CN hydrolase domain [Coenzyme transport and metabolism; General function prediction only] Back     alignment and domain information 
Probab=100.00  E-value=7e-201  Score=1574.70  Aligned_cols=698  Identities=61%  Similarity=1.038  Sum_probs=676.8

Q ss_pred             CceeceecccccccccccccchhhHHHHHHHHHHcCceeeeCcceeecccccccccccccchhhhHHHHHHHhccCCCCc
Q 004727            1 MRLLKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDG   80 (733)
Q Consensus         1 M~~~kVA~~Qln~~~~D~e~N~~ri~~~I~~A~~~gadLvVfPEl~ltGY~~~D~~~~~~~~~~~~~~L~~La~~~~~~~   80 (733)
                      |+.++||+|++|+|++||++|.+||++.|++|++.||.+.+.|||.+|||+|+|||++.|+..|+|+.|.+|.....+++
T Consensus         2 ~r~vtvAtc~lNqWAlDFegN~~rI~~Si~eAk~~gA~~RlGPELEi~GYgC~DHf~E~Dt~~HswE~l~~l~~~~~~~~   81 (706)
T KOG2303|consen    2 GRKVTVATCTLNQWALDFEGNMQRILKSIEEAKARGARYRLGPELEITGYGCEDHFLESDTLLHSWEMLAELVESPVTQD   81 (706)
T ss_pred             CceEEEEEechhhhhhhccccHHHHHHHHHHHHhcCCeeecCCceeecCCChHHhhccchHHHHHHHHHHHHHcCCCCCC
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999888999


Q ss_pred             eeeecCcceeeCceeeeeEEEEecceEEEEecceeeccCCCceeeeccccccccccccccCCchHHHHHhcCcccccccc
Q 004727           81 ILCSFGMPVIKGSERYNCQVLCLNRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPFGYG  160 (733)
Q Consensus        81 i~iivG~p~~~~g~lYN~a~vi~~G~Il~~~~K~~Lp~~g~f~E~r~F~~g~~~~~~e~~~lp~~i~~~~~~~~vpfG~~  160 (733)
                      |++.+|||++|++..|||++++.||+|+.+++|+.|+++|+|+|.|||+||.+...+|+|.||..|++.++|.+|||||.
T Consensus        82 il~diGmPv~hr~~ryNCrv~~~n~kil~IRpKm~lanDgnyRE~RwFt~W~~~~~~e~y~lP~~i~~~~~Q~tVPfGda  161 (706)
T KOG2303|consen   82 ILCDIGMPVMHRNVRYNCRVLFLNRKILLIRPKMWLANDGNYRESRWFTPWTRPRVTEEYQLPRMIQKHTGQETVPFGDA  161 (706)
T ss_pred             eeEecCCchhhhhhhhccceeecCCeEEEEcccceeccCCCchhhccccccccccccceeeccHHHHHHhCCeeecccce
Confidence            99999999999999999999999999999999999999999999999999999989999999999999999999999999


Q ss_pred             eeeeehhhHHHHHhhhhcCCCCCcccccccceEEEecCCCchhhhhhhhHHHHHHhhhccccceEEEeecCCCCCCceee
Q 004727          161 FIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNHQGCDGGRLY  240 (733)
Q Consensus       161 vf~~~~~riGv~ICeDlw~p~~~~~~la~~GadiIlnpSas~~~~gk~~~r~~li~~~A~~~g~~~vyaN~~G~~~~~~~  240 (733)
                      |+++.++.||.+||||+|.|.+|+..|+++|+|||+|.|+||++++|.+.|.+++...+.++|+.|+|+|+.||+|+++|
T Consensus       162 vl~~~dt~ig~EiCEEL~tp~sphi~mal~GVei~~NaSGShh~LrK~~~r~~li~~at~k~GGvYlyaNqrGCDG~RlY  241 (706)
T KOG2303|consen  162 VLQTWDTCIGSEICEELWTPRSPHIDMALDGVEIITNASGSHHELRKLNTRVDLILNATSKCGGVYLYANQRGCDGDRLY  241 (706)
T ss_pred             eeeecccchhHHHHHHHcCCCCcchhhhhCceEEEecCCccHHHHhhhhhhhHHHhcchhhcceEEEeeccCCCCCceeE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecceeEEEEcCeEeeecccccccceEEEEEEeehhhhcccccchhhHHhhhhcCCCCccceecccccccCccCCCCCCCc
Q 004727          241 FDGCSCVVVNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSISSFQEQASCKTKIPSVAVPYNLCQPFNLKMSLSSPL  320 (733)
Q Consensus       241 fdG~S~I~p~G~vla~~~~f~~~~~~vv~a~vDl~~~~~~R~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  320 (733)
                      |||||+|+.||+++||+.+|+.+|++|++|+|||++++.+|...++.+..+..+..|++|+|+|+++...+....++.|+
T Consensus       242 ydGca~Ia~NG~vlAqg~QFsl~DveVv~atvDle~vrsyR~~~~S~~~~as~~~~~~ri~v~~~ls~~~d~~~~~t~p~  321 (706)
T KOG2303|consen  242 YDGCAMIAMNGSVLAQGSQFSLDDVEVVTATVDLEDVRSYRASISSRGLQASRAVKYPRIHVDFELSQHFDLLATPTEPI  321 (706)
T ss_pred             ecchhheeecceeeeecccccccceEEEEEEecHHHHHHHHhhhccccccccccCCcceeeecceeccccccccCCCCCc
Confidence            99999999999999999999999999999999999999999776554433333367999999999986544333788999


Q ss_pred             ccccCCcchhhhcCcchhhhHHhhhcCCceeeeecCCCCCchhHHHHHhhhHHHHHHHHhcCchhhhhhHhHhccccCCC
Q 004727          321 KINYHSPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGE  400 (733)
Q Consensus       321 ~~~~~~~~eei~~~~~~~L~dyl~~sg~~g~vl~LSGGiDSa~~A~l~~~m~~~~~~al~~G~~~v~~~~~~~~~~~~~~  400 (733)
                      ++.+|+|+|||+.||+|||||||||||..||+|+||||+||+.+|+||++||++|++|+.+|+++|++|+++|.++ .++
T Consensus       322 e~~~hsPeeEia~GPacwlWdyLRRs~~aGfflPLSGG~DSsatA~iV~sMC~~V~~av~~g~eqv~~Dvr~i~~~-~~~  400 (706)
T KOG2303|consen  322 EWKYHSPEEEIALGPACWLWDYLRRSGQAGFFLPLSGGVDSSATAAIVYSMCRQVCKAVQSGDEQVLADVRRIVND-ISY  400 (706)
T ss_pred             ccccCCcHHHhccCchHHHHHHHHhcCCCceEEecCCCccchHHHHHHHHHHHHHHHHHHcCchhhhhhhHHHhcC-CCc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999887 458


Q ss_pred             CCCChHHHHhhhheeeeccCcCChHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhhhCCCCceeecCCccccccc
Q 004727          401 FPTDSREFAKRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLG  480 (733)
Q Consensus       401 ~p~~~~~~~~~~~~~v~m~~~~ss~~t~~~A~~lA~~lGi~~~~i~I~~~~~~~~~~~~~~~g~~p~~~~~gg~~~~~~a  480 (733)
                      .|++|++|||++++||||+|+|||++|+.+|++||+++|++|..|+||.+|.++++.|.-++|++|.|+++||+++++++
T Consensus       401 ~p~dp~~l~nri~~TcyMgSenSS~ETr~rak~La~~igs~H~~i~iD~~vsavl~lF~~vtGk~P~f~~~ggsn~enla  480 (706)
T KOG2303|consen  401 TPTDPADLCNRILYTCYMGSENSSKETRRRAKELANQIGSYHIDLNIDTAVSAVLSLFNLVTGKTPRFKSHGGSNRENLA  480 (706)
T ss_pred             CCCCHHHHHHhhhhhheeccccccHHHHHHHHHHHHhhcceeeeeeehHHHHHHHHHHHHHhCCCcceecCCCchhhhHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHHhhcccccCCCcEEEEeccCccccccccccccccCCCCCCCCCCCCcHHhHHHHHHHHHhhcCC
Q 004727          481 LQNIQARIRMVLAFMLASLLPWVHNKPGFYLVLGSSNVDEGLRGYLTKYDCSSADINPIGSISKQDLRTFLRWAATHLGY  560 (733)
Q Consensus       481 ~~NiqaR~R~~~~~~~A~~~~~~~~~~g~~lVlgT~N~sE~~~Gy~T~~gd~~~~i~Pi~~l~K~~vr~l~~~~~~~~g~  560 (733)
                      +||||||+||++.|+|||++||++++.||+|||||+|+||.++||.|||+|||+||||||+|+|+|+|+|++|+.+++|+
T Consensus       481 LQNiQARiRMvLaylfAqL~~wvr~~~GglLVLGSaNVDE~LrGYLTKYDCSSADINPIGgISK~DLr~Fl~~a~~~~~l  560 (706)
T KOG2303|consen  481 LQNIQARIRMVLAYLFAQLLLWVRGRPGGLLVLGSANVDESLRGYLTKYDCSSADINPIGGISKTDLRRFLQYAKEKFGL  560 (706)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEecCccchHhhhhhhhccccccccCCccCccHHHHHHHHHHHHHhcCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchhhhcCCCCcccccccc-cccccccccccCChhhhhhhcccccccccchhhHhHHHHHhhcCCCChhHHHHHHHhhh
Q 004727          561 SSLAEIEAAPPTAELEPIRS-NYSQLDEVDMGMTYEELSVYGRLRKVFHCGPVTMFKNLCYRWGARLTPSEVAEKVKQFF  639 (733)
Q Consensus       561 p~l~~i~~~~psaeL~p~~~-~~~Q~DE~~lG~~Y~~l~~~~~l~~~~~~~p~~~~~~l~~~~~~~~~~~~i~~~v~~f~  639 (733)
                      |+|++|+++||||||+|+++ ++.||||+||||||+||+.|+||||+.+||||+||.+|++.|+++++|+||+||||+||
T Consensus       561 p~L~~il~a~pTAELePl~~g~~~QtDE~dmGmTY~ELsv~GrlRK~~~cGPysMF~kLl~~W~~klsp~qvaEKVk~FF  640 (706)
T KOG2303|consen  561 PALQSILDAPPTAELEPLTDGDYSQTDEADMGMTYAELSVFGRLRKVSKCGPYSMFCKLLHQWGDKLSPRQVAEKVKRFF  640 (706)
T ss_pred             hHHHHHhcCCCcccccccccCcccccchhhhCccHHHHHHhHhhccccccCcHHHHHHHHHHhcCcCCHHHHHHHHHHHH
Confidence            99999999999999999987 89999999999999999999999999999999999999999999999999999999999


Q ss_pred             heeeeccceeeecCccccccCCCCCCCccchhhhhhcccCccccccHHHHHHhhhCCCCC
Q 004727          640 KYYSINRHKMTVLTPSYHAESYSPDDNRFDLRQFLYNARWPYQFRKIDELVKELDGEKVP  699 (733)
Q Consensus       640 ~~~~~n~hK~~~~~ps~h~~~~~~d~~r~d~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~  699 (733)
                      .+|++||||||++|||||+|+|||||||||+||||||++|||||++||+++.++|+...+
T Consensus       641 ~~Y~iNRHKmTvlTPsyHAE~YspeDnRfDlRpFLynp~w~wqfkkIde~v~~~e~~~~~  700 (706)
T KOG2303|consen  641 SYYSINRHKMTVLTPSYHAENYSPEDNRFDLRPFLYNPSWPWQFKKIDEQVEQLEANSTK  700 (706)
T ss_pred             hhheeccccceecccccccccCCCccccccccccccCCCCchHHHHHHHHHHHhhhccCc
Confidence            999999999999999999999999999999999999999999999999999999986554

>PLN02339 NAD+ synthase (glutamine-hydrolysing) Back     alignment and domain information
>PRK02628 nadE NAD synthetase; Reviewed Back     alignment and domain information
>PRK13981 NAD synthetase; Provisional Back     alignment and domain information
>PF02540 NAD_synthase: NAD synthase; InterPro: IPR022310 NAD+ synthase (6 Back     alignment and domain information
>COG0171 NadE NAD synthase [Coenzyme metabolism] Back     alignment and domain information
>PRK00768 nadE NAD synthetase; Reviewed Back     alignment and domain information
>PRK13980 NAD synthetase; Provisional Back     alignment and domain information
>PRK00876 nadE NAD synthetase; Reviewed Back     alignment and domain information
>cd00553 NAD_synthase NAD+ synthase is a homodimer, which catalyzes the final step in de novo nicotinamide adenine dinucleotide (NAD+) biosynthesis, an amide transfer from either ammonia or glutamine to nicotinic acid adenine dinucleotide (NaAD) Back     alignment and domain information
>PTZ00323 NAD+ synthase; Provisional Back     alignment and domain information
>cd07570 GAT_Gln-NAD-synth Glutamine aminotransferase (GAT, glutaminase) domain of glutamine-dependent NAD synthetases (class 7 and 8 nitrilases) Back     alignment and domain information
>cd07586 nitrilase_8 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>TIGR03381 agmatine_aguB N-carbamoylputrescine amidase Back     alignment and domain information
>cd07576 R-amidase_like Pseudomonas sp Back     alignment and domain information
>cd07587 ML_beta-AS mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases) Back     alignment and domain information
>COG0388 Predicted amidohydrolase [General function prediction only] Back     alignment and domain information
>PRK10438 C-N hydrolase family amidase; Provisional Back     alignment and domain information
>cd07568 ML_beta-AS_like mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases) Back     alignment and domain information
>TIGR00552 nadE NAD+ synthetase Back     alignment and domain information
>cd07572 nit Nit1, Nit 2, and related proteins, and the Nit1-like domain of NitFhit (class 10 nitrilases) Back     alignment and domain information
>cd07569 DCase N-carbamyl-D-amino acid amidohydrolase (DCase, class 6 nitrilases) Back     alignment and domain information
>cd07580 nitrilase_2 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>cd07573 CPA N-carbamoylputrescine amidohydrolase (CPA) (class 11 nitrilases) Back     alignment and domain information
>PLN02747 N-carbamolyputrescine amidase Back     alignment and domain information
>cd07583 nitrilase_5 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>PLN00202 beta-ureidopropionase Back     alignment and domain information
>cd07585 nitrilase_7 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>cd07584 nitrilase_6 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>cd07581 nitrilase_3 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>cd07579 nitrilase_1_R2 Second nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>cd07578 nitrilase_1_R1 First nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>cd07564 nitrilases_CHs Nitrilases, cyanide hydratase (CH)s, and similar proteins (class 1 nitrilases) Back     alignment and domain information
>cd07565 aliphatic_amidase aliphatic amidases (class 2 nitrilases) Back     alignment and domain information
>PLN02798 nitrilase Back     alignment and domain information
>cd07575 Xc-1258_like Xanthomonas campestris XC1258 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>PLN02504 nitrilase Back     alignment and domain information
>cd07567 biotinidase_like biotinidase and vanins (class 4 nitrilases) Back     alignment and domain information
>cd07577 Ph0642_like Pyrococcus horikoshii Ph0642 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>cd07197 nitrilase Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes Back     alignment and domain information
>cd07582 nitrilase_4 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>cd07574 nitrilase_Rim1_like Uncharacterized subgroup of the nitrilase superfamily; some members of this subgroup have an N-terminal RimI domain (class 12 nitrilases) Back     alignment and domain information
>PRK13287 amiF formamidase; Provisional Back     alignment and domain information
>PRK13286 amiE acylamide amidohydrolase; Provisional Back     alignment and domain information
>cd07571 ALP_N-acyl_transferase Apolipoprotein N-acyl transferase (class 9 nitrilases) Back     alignment and domain information
>cd07566 ScNTA1_like Saccharomyces cerevisiae N-terminal amidase NTA1, and related proteins (class 3 nitrilases) Back     alignment and domain information
>KOG0807 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism] Back     alignment and domain information
>PF00795 CN_hydrolase: Carbon-nitrogen hydrolase The Prosite family is specific to nitrilases The Prosite family is specific to UPF0012; InterPro: IPR003010 This family contains nitrilases that break carbon-nitrogen bonds and appear to be involved in the reduction of organic nitrogen compounds and ammonia production [] Back     alignment and domain information
>KOG0806 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism] Back     alignment and domain information
>PRK00302 lnt apolipoprotein N-acyltransferase; Reviewed Back     alignment and domain information
>TIGR00546 lnt apolipoprotein N-acyltransferase Back     alignment and domain information
>KOG0805 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism] Back     alignment and domain information
>KOG0808 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism] Back     alignment and domain information
>PRK12291 apolipoprotein N-acyltransferase; Reviewed Back     alignment and domain information
>PRK13825 conjugal transfer protein TraB; Provisional Back     alignment and domain information
>PF03054 tRNA_Me_trans: tRNA methyl transferase; InterPro: IPR004506 tRNA-specific 2-thiouridylase catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34 Back     alignment and domain information
>TIGR00268 conserved hypothetical protein TIGR00268 Back     alignment and domain information
>COG0815 Lnt Apolipoprotein N-acyltransferase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>COG1606 ATP-utilizing enzymes of the PP-loop superfamily [General function prediction only] Back     alignment and domain information
>COG0482 TrmU Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK14665 mnmA tRNA-specific 2-thiouridylase MnmA; Provisional Back     alignment and domain information
>TIGR00884 guaA_Cterm GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit Back     alignment and domain information
>KOG2805 consensus tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK14664 tRNA-specific 2-thiouridylase MnmA; Provisional Back     alignment and domain information
>cd01998 tRNA_Me_trans tRNA methyl transferase Back     alignment and domain information
>PRK00143 mnmA tRNA-specific 2-thiouridylase MnmA; Reviewed Back     alignment and domain information
>PLN02347 GMP synthetase Back     alignment and domain information
>cd01997 GMP_synthase_C The C-terminal domain of GMP synthetase Back     alignment and domain information
>PRK00919 GMP synthase subunit B; Validated Back     alignment and domain information
>TIGR00420 trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase Back     alignment and domain information
>cd01990 Alpha_ANH_like_I This is a subfamily of Adenine nucleotide alpha hydrolases superfamily Back     alignment and domain information
>PRK01565 thiamine biosynthesis protein ThiI; Provisional Back     alignment and domain information
>PRK00074 guaA GMP synthase; Reviewed Back     alignment and domain information
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily Back     alignment and domain information
>PRK11106 queuosine biosynthesis protein QueC; Provisional Back     alignment and domain information
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain Back     alignment and domain information
>COG0603 Predicted PP-loop superfamily ATPase [General function prediction only] Back     alignment and domain information
>PRK04527 argininosuccinate synthase; Provisional Back     alignment and domain information
>PRK00509 argininosuccinate synthase; Provisional Back     alignment and domain information
>PF06508 QueC: Queuosine biosynthesis protein QueC; InterPro: IPR018317 This protein family is represented by a single member in nearly every completed large (> 1000 genes) prokaryotic genome Back     alignment and domain information
>COG0519 GuaA GMP synthase, PP-ATPase domain/subunit [Nucleotide transport and metabolism] Back     alignment and domain information
>cd01996 Alpha_ANH_like_III This is a subfamily of Adenine nucleotide alpha hydrolases superfamily Back     alignment and domain information
>PRK13820 argininosuccinate synthase; Provisional Back     alignment and domain information
>TIGR00364 exsB protein Back     alignment and domain information
>PRK08349 hypothetical protein; Validated Back     alignment and domain information
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning] Back     alignment and domain information
>PRK14561 hypothetical protein; Provisional Back     alignment and domain information
>cd01712 ThiI ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway Back     alignment and domain information
>TIGR03573 WbuX N-acetyl sugar amidotransferase Back     alignment and domain information
>PLN00200 argininosuccinate synthase; Provisional Back     alignment and domain information
>TIGR00342 thiazole biosynthesis/tRNA modification protein ThiI Back     alignment and domain information
>cd01999 Argininosuccinate_Synthase Argininosuccinate synthase Back     alignment and domain information
>TIGR00032 argG argininosuccinate synthase Back     alignment and domain information
>PRK08384 thiamine biosynthesis protein ThiI; Provisional Back     alignment and domain information
>cd01713 PAPS_reductase This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase Back     alignment and domain information
>PRK02628 nadE NAD synthetase; Reviewed Back     alignment and domain information
>cd01991 Asn_Synthase_B_C The C-terminal domain of Asparagine Synthase B Back     alignment and domain information
>KOG0571 consensus Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism] Back     alignment and domain information
>KOG1622 consensus GMP synthase [Nucleotide transport and metabolism] Back     alignment and domain information
>cd01995 ExsB ExsB is a transcription regulator related protein Back     alignment and domain information
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional Back     alignment and domain information
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,] Back     alignment and domain information
>PF02568 ThiI: Thiamine biosynthesis protein (ThiI); InterPro: IPR020536 Thiamine pyrophosphate (TPP) is synthesized de novo in many bacteria and is a required cofactor for many enzymes in the cell Back     alignment and domain information
>TIGR01536 asn_synth_AEB asparagine synthase (glutamine-hydrolyzing) Back     alignment and domain information
>PF00733 Asn_synthase: Asparagine synthase; InterPro: IPR001962 This domain is always found associated with (IPR000583 from INTERPRO) Back     alignment and domain information
>PRK08576 hypothetical protein; Provisional Back     alignment and domain information
>PTZ00077 asparagine synthetase-like protein; Provisional Back     alignment and domain information
>PLN02549 asparagine synthase (glutamine-hydrolyzing) Back     alignment and domain information
>PRK09431 asnB asparagine synthetase B; Provisional Back     alignment and domain information
>PRK05253 sulfate adenylyltransferase subunit 2; Provisional Back     alignment and domain information
>TIGR03108 eps_aminotran_1 exosortase 1 system-associated amidotransferase 1 Back     alignment and domain information
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily Back     alignment and domain information
>TIGR03104 trio_amidotrans asparagine synthase family amidotransferase Back     alignment and domain information
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional Back     alignment and domain information
>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional Back     alignment and domain information
>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG1365 Predicted ATPase (PP-loop superfamily) [General function prediction only] Back     alignment and domain information
>COG0367 AsnB Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism] Back     alignment and domain information
>PRK13794 hypothetical protein; Provisional Back     alignment and domain information
>PRK13795 hypothetical protein; Provisional Back     alignment and domain information
>TIGR03679 arCOG00187 arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein Back     alignment and domain information
>PRK02090 phosphoadenosine phosphosulfate reductase; Provisional Back     alignment and domain information
>PF01507 PAPS_reduct: Phosphoadenosine phosphosulfate reductase family; InterPro: IPR002500 This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase Back     alignment and domain information
>COG0301 ThiI Thiamine biosynthesis ATP pyrophosphatase [Coenzyme metabolism] Back     alignment and domain information
>PRK08557 hypothetical protein; Provisional Back     alignment and domain information
>cd01986 Alpha_ANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases and ATP sulphurylases Back     alignment and domain information
>TIGR02039 CysD sulfate adenylyltransferase, small subunit Back     alignment and domain information
>COG2117 Predicted subunit of tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00434 cysH phosophoadenylyl-sulfate reductase (thioredoxin) Back     alignment and domain information
>PRK05370 argininosuccinate synthase; Validated Back     alignment and domain information
>COG0137 ArgG Argininosuccinate synthase [Amino acid transport and metabolism] Back     alignment and domain information
>PRK12563 sulfate adenylyltransferase subunit 2; Provisional Back     alignment and domain information
>PF00764 Arginosuc_synth: Arginosuccinate synthase; InterPro: IPR001518 Argininosuccinate synthase (6 Back     alignment and domain information
>TIGR00289 conserved hypothetical protein TIGR00289 Back     alignment and domain information
>COG0175 CysH 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes [Amino acid transport and metabolism / Coenzyme metabolism] Back     alignment and domain information
>TIGR02057 PAPS_reductase phosphoadenosine phosphosulfate reductase, thioredoxin dependent Back     alignment and domain information
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF) Back     alignment and domain information
>KOG1706 consensus Argininosuccinate synthase [Amino acid transport and metabolism] Back     alignment and domain information
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only] Back     alignment and domain information
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain Back     alignment and domain information
>TIGR03183 DNA_S_dndC putative sulfurtransferase DndC Back     alignment and domain information
>PRK06850 hypothetical protein; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query733
3ilv_A634 Crystal Structure Of A Glutamine-Dependent Nad(+) S 3e-56
1nsy_A271 Crystal Structure Of Nh3-dependent Nad+ Synthetase 9e-16
2pz8_A284 Nad+ Synthetase From Bacillus Anthracis With Amp-Cp 1e-15
3dla_A680 X-ray Crystal Structure Of Glutamine-dependent Nad+ 7e-14
3sdb_A680 Crystal Structure Of C176a Mutant Of Glutamine-Depe 7e-13
3n05_A590 Crystal Structure Of Nh3-Dependent Nad+ Synthetase 6e-10
3dpi_A285 Crystal Structure Of Nad+ Synthetase From Burkholde 4e-08
3fiu_A249 Structure Of Nmn Synthetase From Francisella Tulare 2e-07
1wxe_A275 E.Coli Nad Synthetase, Amp Length = 275 1e-05
2e18_A257 Crystal Structure Of Project Ph0182 From Pyrococcus 2e-05
3p52_A249 Nh3-Dependent Nad Synthetase From Campylobacter Jej 2e-05
1xng_A268 Crystal Structure Of Nh3-Dependent Nad+ Synthetase 4e-04
3q4g_A279 Structure Of Nad Synthetase From Vibrio Cholerae Le 5e-04
>pdb|3ILV|A Chain A, Crystal Structure Of A Glutamine-Dependent Nad(+) Synthetase From Cytophaga Hutchinsonii Length = 634 Back     alignment and structure 
Iteration: 1

 Score =  216 bits (551), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 187/673 (27%), Positives = 290/673 (43%), Gaps = 81/673 (12%)
Query: 1   MRLLKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELD 60
           +  +++    +N   +D++ N+KNI ++I  AK A   I   PEL ITGYGCED FL   
Sbjct: 3   LSTIRIGGAAVNQTPIDWENNVKNILDAIEEAKNANVEILCLPELCITGYGCEDLFLTDW 62
Query: 61  TVTHAWE-CLKDLLLGDWTDGILCSFGMPVIKGSERYNCQVLCLNRKIIMIRPKLWLAND 119
               A E C +  +    TD I  S G+P       YNC  L  N  +     K +LAN+
Sbjct: 63  VAETAIEYCFE--IAASCTD-ITVSLGLPXRIAGITYNCVCLVENGIVKGFSAKQFLANE 119
Query: 120 GNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPFGYGFIQFLDTAVAAEICEELFT 179
           G + E RWFTAW  ++    F L N++         PFG       D  +  EICE+ + 
Sbjct: 120 GVHYETRWFTAWP-RNHTTTF-LYNDVKY-------PFGDVLYNVKDARIGFEICEDAWR 170
Query: 180 PIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNHQGCDGGRL 239
                      G  + +N S SH    K   R    I  +      Y+Y+N  G + GR 
Sbjct: 171 TDRVGIRHYEKGATLVLNPSASHFAFGKSAIRYDLVIGGSERFDCTYVYANLLGNEAGRX 230
Query: 240 YFDGCSCVVVNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSISSFQEQASCKTKIPS 299
            +DG   +   G +I +  + S K+V ++ A +  D                       S
Sbjct: 231 IYDGEVLIAHKGKLIQRNDRLSFKNVNLIYADIATD-----------------------S 267
Query: 300 VAVPYNLCQPFNLKMSLSSPLKINYHSPEEEIAF--GPGCWLWDYLRRSGASGFLLPLSG 357
              P  +    +L               E+E  F       L+DY R+S + GF+L LSG
Sbjct: 268 AETPETVLTQDDL---------------EKEFEFWEATSLGLFDYXRKSRSKGFVLSLSG 312
Query: 358 GADSSSVAAIVGCMCQLVVKEI------SNGDEQVKADAIRIGHYANGEFPTDSREFAKR 411
           GADSS+ A  V    +  +KE+         + +   D   + H     F   +++    
Sbjct: 313 GADSSACAIXVAEXIRKGLKELGLTAFLQKSNXETLFDLPALQHLP---FEEQAKKITAV 369
Query: 412 IFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVD 471
              T +  + NS  ET   AK LA+ IG+   + S+D  +  + +  + +  +   ++ D
Sbjct: 370 FLTTAYQSTRNSGDETYTSAKTLAESIGATFYNWSVDEEIEQYKATIENVIERPLTWEKD 429
Query: 472 GGSNVENLGLQNIQARIRMVLAFMLASLLPWVHNKPGFYLVLGSSNVDEGLRGYLTKYDC 531
                 ++ LQNIQAR R  + + L ++           L++ +SN  EG  GY T    
Sbjct: 430 ------DITLQNIQARGRAPIIWXLTNVKQ--------ALLITTSNRSEGDVGYATXDGD 475
Query: 532 SSADINPIGSISKQDLRTFLRWAATHLGYSSLAEIEAAPPTAELEPIRSNYSQLDEVDMG 591
           ++  I PI  + K  +R++LRWA  +     L  +    PTAEL P  S Y+Q DE D+ 
Sbjct: 476 TAGGIAPIAGVDKDFIRSWLRWAEKNRNQHGLHIVNKLAPTAELRP--SEYTQTDERDL- 532
Query: 592 MTYEELSVYGRLRKVFHCGPVTMFKNLCYRWGARLTPSEVAEKVKQFFKYYSINRHKMTV 651
             Y+ L+   R        PV ++  L        T +E    VK+FF+ +SIN+ K   
Sbjct: 533 XPYDVLARIERKAIKERLSPVQVYTALLTE--GPYTKNEFKYWVKKFFRLWSINQWKRER 590
Query: 652 LTPSYHAESYSPD 664
           L PS+H + ++ D
Sbjct: 591 LAPSFHXDDFNID 603
>pdb|1NSY|A Chain A, Crystal Structure Of Nh3-dependent Nad+ Synthetase From Bacillus Subtilis Length = 271 Back     alignment and structure
>pdb|2PZ8|A Chain A, Nad+ Synthetase From Bacillus Anthracis With Amp-Cpp And Mg2+ Length = 284 Back     alignment and structure
>pdb|3DLA|A Chain A, X-ray Crystal Structure Of Glutamine-dependent Nad+ Synthetase From Mycobacterium Tuberculosis Bound To Naad+ And Don Length = 680 Back     alignment and structure
>pdb|3SDB|A Chain A, Crystal Structure Of C176a Mutant Of Glutamine-Dependent Nad+ Synthetase From M. Tuberculosis In Apo Form Length = 680 Back     alignment and structure
>pdb|3N05|A Chain A, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From Streptomyces Avermitilis Length = 590 Back     alignment and structure
>pdb|3DPI|A Chain A, Crystal Structure Of Nad+ Synthetase From Burkholderia Pseudomallei Length = 285 Back     alignment and structure
>pdb|3FIU|A Chain A, Structure Of Nmn Synthetase From Francisella Tularensis Length = 249 Back     alignment and structure
>pdb|1WXE|A Chain A, E.Coli Nad Synthetase, Amp Length = 275 Back     alignment and structure
>pdb|2E18|A Chain A, Crystal Structure Of Project Ph0182 From Pyrococcus Horikoshii Ot3 Length = 257 Back     alignment and structure
>pdb|3P52|A Chain A, Nh3-Dependent Nad Synthetase From Campylobacter Jejuni Subsp. Jejuni Nctc 11168 In Complex With The Nitrate Ion Length = 249 Back     alignment and structure
>pdb|1XNG|A Chain A, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From Helicobacter Pylori Length = 268 Back     alignment and structure
>pdb|3Q4G|A Chain A, Structure Of Nad Synthetase From Vibrio Cholerae Length = 279 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query733
3ilv_A634 Glutamine-dependent NAD(+) synthetase; protein str 0.0
3sdb_A680 Glutamine-dependent NAD(+) synthetase; glutamine-a 0.0
3n05_A590 NH(3)-dependent NAD(+) synthetase; ligase, structu 2e-58
4f4h_A565 Glutamine dependent NAD+ synthetase; structural ge 4e-43
1kqp_A271 NAD+ synthase, NH(3)-dependent NAD(+) synthetase, 2e-35
3fiu_A249 NH(3)-dependent NAD(+) synthetase; rossman fold, a 3e-35
3dpi_A285 NAD+ synthetase; ssgcid, decode, structural genomi 3e-34
3q4g_A279 NH(3)-dependent NAD(+) synthetase; structural geno 1e-33
1wxi_A275 NH(3)-dependent NAD(+) synthetase; NADE, E.coli, l 1e-31
3p52_A249 NH(3)-dependent NAD(+) synthetase; structural geno 1e-30
1xng_A268 NH(3)-dependent NAD(+) synthetase; amidotransferas 2e-28
2e18_A257 NH(3)-dependent NAD(+) synthetase; ligase, structu 5e-28
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-16
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-07
3ivz_A262 Nitrilase; alpha-beta sandwich, hydrolase; 1.57A { 2e-07
3hkx_A283 Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alp 3e-04
1uf5_A303 N-carbamyl-D-amino acid amidohydrolase; HET: CDT; 4e-04
>3ilv_A Glutamine-dependent NAD(+) synthetase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.79A {Cytophaga hutchinsonii atcc 33406} Length = 634 Back     alignment and structure
 Score =  683 bits (1765), Expect = 0.0
 Identities = 181/696 (26%), Positives = 291/696 (41%), Gaps = 70/696 (10%)

Query: 1   MRLLKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELD 60
           +  +++    +N   +D++ N+KNI ++I  AK A   I   PEL ITGYGCED FL   
Sbjct: 3   LSTIRIGGAAVNQTPIDWENNVKNILDAIEEAKNANVEILCLPELCITGYGCEDLFLTDW 62

Query: 61  TVTHAWECLKDLLLGDWTDGILCSFGMPVIKGSERYNCQVLCLNRKIIMIRPKLWLANDG 120
               A E   ++        I  S G+P+      YNC  L  N  +     K +LAN+G
Sbjct: 63  VAETAIEYCFEIA--ASCTDITVSLGLPMRIAGITYNCVCLVENGIVKGFSAKQFLANEG 120

Query: 121 NYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPFGYGFIQFLDTAVAAEICEELFTP 180
            + E RWFTAW +          +  +        PFG       D  +  EICE+ +  
Sbjct: 121 VHYETRWFTAWPR---------NHTTTFLYNDVKYPFGDVLYNVKDARIGFEICEDAWRT 171

Query: 181 IPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNHQGCDGGRLY 240
                     G  + +N S SH    K   R    I  +      Y+Y+N  G + GR+ 
Sbjct: 172 DRVGIRHYEKGATLVLNPSASHFAFGKSAIRYDLVIGGSERFDCTYVYANLLGNEAGRMI 231

Query: 241 FDGCSCVVVNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSISSFQEQASCKTKIPSV 300
           +DG   +   G +I +  + S K+V ++ A +  D+       ++               
Sbjct: 232 YDGEVLIAHKGKLIQRNDRLSFKNVNLIYADIATDSAETPETVLTQD------------- 278

Query: 301 AVPYNLCQPFNLKMSLSSPLKINYHSPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGAD 360
                                      E E        L+DY+R+S + GF+L LSGGAD
Sbjct: 279 -----------------------DLEKEFEFWEATSLGLFDYMRKSRSKGFVLSLSGGAD 315

Query: 361 SSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGH---YANGEFPTDSREFAKRIFYTVF 417
           SS+ A +V  M +  +KE+       K++   +       +  F   +++       T +
Sbjct: 316 SSACAIMVAEMIRKGLKELGLTAFLQKSNMETLFDLPALQHLPFEEQAKKITAVFLTTAY 375

Query: 418 MGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVE 477
             + NS  ET   AK LA+ IG+   + S+D  +  + +  + +  +            +
Sbjct: 376 QSTRNSGDETYTSAKTLAESIGATFYNWSVDEEIEQYKATIENVIERPL------TWEKD 429

Query: 478 NLGLQNIQARIRMVLAFMLASLLPWVHNKPGFYLVLGSSNVDEGLRGYLTKYDCSSADIN 537
           ++ LQNIQAR R  + +ML        N     L++ +SN  EG  GY T    ++  I 
Sbjct: 430 DITLQNIQARGRAPIIWMLT-------NVKQ-ALLITTSNRSEGDVGYATMDGDTAGGIA 481

Query: 538 PIGSISKQDLRTFLRWAATHLGYSSLAEIEAAPPTAELEPIRSNYSQLDEVDMGMTYEEL 597
           PI  + K  +R++LRWA  +     L  +    PTAEL P  S Y+Q DE D+ M Y+ L
Sbjct: 482 PIAGVDKDFIRSWLRWAEKNRNQHGLHIVNKLAPTAELRP--SEYTQTDERDL-MPYDVL 538

Query: 598 SVYGRLRKVFHCGPVTMFKNLCYRWGARLTPSEVAEKVKQFFKYYSINRHKMTVLTPSYH 657
           +   R        PV ++  L        T +E    VK+FF+ +SIN+ K   L PS+H
Sbjct: 539 ARIERKAIKERLSPVQVYTALLTEGP--YTKNEFKYWVKKFFRLWSINQWKRERLAPSFH 596

Query: 658 AESYSPDDNRFDLRQFLYNARWPYQFRKIDELVKEL 693
            + ++ D   +     L +  +  +   +D+     
Sbjct: 597 MDDFNIDPRSWYRFPILSSG-FAKELNDLDQEGHHH 631
>3sdb_A Glutamine-dependent NAD(+) synthetase; glutamine-amidotransferase, glutaminase, glutamine-dependent synthetase, ligase; 2.00A {Mycobacterium tuberculosis} PDB: 3seq_A* 3sez_A* 3szg_A* 3dla_A* 3syt_A* Length = 680 Back     alignment and structure
>3n05_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, protein structure initiative, P nysgrc; 2.35A {Streptomyces avermitilis} Length = 590 Back     alignment and structure
>4f4h_A Glutamine dependent NAD+ synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ligase; 1.75A {Burkholderia thailandensis} Length = 565 Back     alignment and structure
>1kqp_A NAD+ synthase, NH(3)-dependent NAD(+) synthetase, SPOR; ligase, amidotransferase, ATP pyrophosphatase, NAD-adenylate; HET: ADJ; 1.03A {Bacillus subtilis} SCOP: c.26.2.1 PDB: 1fyd_A* 1ifx_A* 1ee1_A* 1ih8_A* 1nsy_A* 2nsy_A* 2pzb_A 2pza_A* 2pz8_A Length = 271 Back     alignment and structure
>3fiu_A NH(3)-dependent NAD(+) synthetase; rossman fold, adenine nucleotide alpha hydrolase-like, ATP- binding, ligase, nucleotide-binding; HET: AMP; 1.85A {Francisella tularensis subsp} Length = 249 Back     alignment and structure
>3dpi_A NAD+ synthetase; ssgcid, decode, structural genomics, PSI, protein structure initiative; 2.20A {Burkholderia pseudomallei} Length = 285 Back     alignment and structure
>3q4g_A NH(3)-dependent NAD(+) synthetase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha beta; 2.40A {Vibrio cholerae} Length = 279 Back     alignment and structure
>1wxi_A NH(3)-dependent NAD(+) synthetase; NADE, E.coli, ligase; HET: AMP; 1.70A {Escherichia coli} SCOP: c.26.2.1 PDB: 1wxf_A 1wxg_A* 1wxh_A* 1wxe_A* 3hmq_A* Length = 275 Back     alignment and structure
>3p52_A NH(3)-dependent NAD(+) synthetase; structural genomics, center for structural genomics of infec diseases, NADE, CSGI; 2.74A {Campylobacter jejuni} Length = 249 Back     alignment and structure
>1xng_A NH(3)-dependent NAD(+) synthetase; amidotransferase, ligase; HET: DND ATP; 1.70A {Helicobacter pylori} SCOP: c.26.2.1 PDB: 1xnh_A Length = 268 Back     alignment and structure
>2e18_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, NPPSFA, national project on Pro structural and functional analyses; 2.10A {Pyrococcus horikoshii} Length = 257 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3ivz_A Nitrilase; alpha-beta sandwich, hydrolase; 1.57A {Pyrococcus abyssi} PDB: 3iw3_A 3ki8_A 3klc_A 1j31_A Length = 262 Back     alignment and structure
>3hkx_A Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alpha dimeric sandwich hydrolase; 1.66A {Nesterenkonia SP} Length = 283 Back     alignment and structure
>1uf5_A N-carbamyl-D-amino acid amidohydrolase; HET: CDT; 1.60A {Agrobacterium SP} SCOP: d.160.1.2 PDB: 1uf4_A* 1uf7_A* 1uf8_A* 1erz_A 1fo6_A 2ggl_A 2ggk_A Length = 303 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query733
3ilv_A634 Glutamine-dependent NAD(+) synthetase; protein str 100.0
4f4h_A565 Glutamine dependent NAD+ synthetase; structural ge 100.0
3sdb_A680 Glutamine-dependent NAD(+) synthetase; glutamine-a 100.0
3n05_A590 NH(3)-dependent NAD(+) synthetase; ligase, structu 100.0
3q4g_A279 NH(3)-dependent NAD(+) synthetase; structural geno 100.0
3dpi_A285 NAD+ synthetase; ssgcid, decode, structural genomi 100.0
1wxi_A275 NH(3)-dependent NAD(+) synthetase; NADE, E.coli, l 100.0
1kqp_A271 NAD+ synthase, NH(3)-dependent NAD(+) synthetase, 100.0
3fiu_A249 NH(3)-dependent NAD(+) synthetase; rossman fold, a 100.0
3p52_A249 NH(3)-dependent NAD(+) synthetase; structural geno 100.0
3ivz_A262 Nitrilase; alpha-beta sandwich, hydrolase; 1.57A { 100.0
3p8k_A281 Hydrolase, carbon-nitrogen family; HET: PGE; 1.70A 100.0
3hkx_A283 Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alp 100.0
1xng_A268 NH(3)-dependent NAD(+) synthetase; amidotransferas 100.0
2e11_A266 Hydrolase; dimethylarsenic inhibi complex, cacodyl 100.0
2w1v_A276 Nitrilase-2, nitrilase homolog 2; hydrolase; 1.49A 100.0
2e18_A257 NH(3)-dependent NAD(+) synthetase; ligase, structu 100.0
1f89_A291 32.5 kDa protein YLR351C; nitrilase, dimer, struct 100.0
1uf5_A303 N-carbamyl-D-amino acid amidohydrolase; HET: CDT; 100.0
2vhh_A405 CG3027-PA; hydrolase; 2.8A {Drosophila melanogaste 100.0
1ems_A440 Nitfhit, NIT-fragIle histidine triad fusion protei 100.0
2dyu_A334 Formamidase; AMIF, CEK, catalytic triad, helicobac 100.0
2uxy_A341 Aliphatic amidase; nitrilase superfamily, hydrolas 100.0
2vxo_A697 GMP synthase [glutamine-hydrolyzing]; proto-oncoge 99.81
1gpm_A525 GMP synthetase, XMP aminase; class I glutamine ami 99.59
2hma_A376 Probable tRNA (5-methylaminomethyl-2-thiouridylat 99.43
2ywb_A503 GMP synthase [glutamine-hydrolyzing]; GMP syntheta 99.41
2der_A380 TRNA-specific 2-thiouridylase MNMA; protein-RNA co 99.33
2dpl_A308 GMP synthetase, GMP synthase [glutamine-hydrolyzin 99.32
3uow_A556 GMP synthetase; structural genomics consortium, SG 99.23
3bl5_A219 Queuosine biosynthesis protein QUEC; PREQ1 biosynt 99.21
2pg3_A232 Queuosine biosynthesis protein QUEC; YP_049261.1, 99.13
3tqi_A527 GMP synthase [glutamine-hydrolyzing]; ligase; 2.84 99.11
2c5s_A413 THII, probable thiamine biosynthesis protein THII; 99.1
1kor_A400 Argininosuccinate synthetase; ligase, riken struct 98.89
3k32_A203 Uncharacterized protein MJ0690; predicted subunit 98.72
1vl2_A421 Argininosuccinate synthase; TM1780, structural gen 98.68
2nz2_A413 Argininosuccinate synthase; amino-acid biosynthesi 98.66
1sur_A215 PAPS reductase; assimilatory sulfate reduction, 3- 98.63
1wy5_A317 TILS, hypothetical UPF0072 protein AQ_1887; N-type 98.47
1k92_A455 Argininosuccinate synthase, argininosuccinate SY; 98.4
2o8v_A252 Phosphoadenosine phosphosulfate reductase; disulfi 98.37
3a2k_A 464 TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, 98.34
1ni5_A433 Putative cell cycle protein MESJ; structural genom 98.19
1vbk_A307 Hypothetical protein PH1313; structural genomics, 98.19
1jgt_A513 Beta-lactam synthetase; asparagine synthetase, cla 98.15
1q15_A503 CARA; CMPR, (2S,5S)-5-carboxymethylproline, B-LS, 98.08
1ct9_A553 Asparagine synthetase B; amidotransferase, substra 98.0
2wsi_A306 FAD synthetase; transferase, nucleotidyltransferas 97.76
2oq2_A261 Phosphoadenosine phosphosulfate reductase; sulfate 97.71
1zun_A325 Sulfate adenylyltransferase subunit 2; beta barrel 97.68
2goy_A275 Adenosine phosphosulfate reductase; iron sulfur cl 97.65
3rjz_A237 N-type ATP pyrophosphatase superfamily; structural 97.51
3fwk_A308 FMN adenylyltransferase; FAD biosynthesis, alpha/b 92.58
>3ilv_A Glutamine-dependent NAD(+) synthetase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.79A {Cytophaga hutchinsonii atcc 33406} Back     alignment and structure
Probab=100.00  E-value=3.2e-127  Score=1118.14  Aligned_cols=621  Identities=30%  Similarity=0.454  Sum_probs=538.1

Q ss_pred             CceeceecccccccccccccchhhHHHHHHHHHHcCceeeeCcceeecccccccccccccchhhhHHHHHHHhccCCCCc
Q 004727            1 MRLLKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDG   80 (733)
Q Consensus         1 M~~~kVA~~Qln~~~~D~e~N~~ri~~~I~~A~~~gadLvVfPEl~ltGY~~~D~~~~~~~~~~~~~~L~~La~~~~~~~   80 (733)
                      |+.||||++|+|++++|+++|+++|+++|++|+++|||||||||+++|||.++|++.++++...+++.|++|++.+  .+
T Consensus         3 M~~~rVA~~Q~~~~~~d~~~N~~~i~~~i~~A~~~gadLvVfPEl~ltGY~~~dl~~~~~~~~~~~~~l~~la~~~--~~   80 (634)
T 3ilv_A            3 LSTIRIGGAAVNQTPIDWENNVKNILDAIEEAKNANVEILCLPELCITGYGCEDLFLTDWVAETAIEYCFEIAASC--TD   80 (634)
T ss_dssp             -CEEEEEEEEECCCTTCHHHHHHHHHHHHHHHHHTTCSEEECCTTTTTCSCCGGGGGSHHHHHHHHHHHHHHHTTC--TT
T ss_pred             CCCeEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCCcEEEcCCCccccCChHHHhhChhhhHHHHHHHHHHHHhC--CC
Confidence            6679999999999999999999999999999999999999999999999999999988888888899999999873  48


Q ss_pred             eeeecCcceeeCceeeeeEEEEecceEEEEecceeeccCCCceeeeccccccccccccccCCchHHHHHhcCcccccccc
Q 004727           81 ILCSFGMPVIKGSERYNCQVLCLNRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPFGYG  160 (733)
Q Consensus        81 i~iivG~p~~~~g~lYN~a~vi~~G~Il~~~~K~~Lp~~g~f~E~r~F~~g~~~~~~e~~~lp~~i~~~~~~~~vpfG~~  160 (733)
                      +++++|+|++.++++|||++++.+|+|+++|+|+|||++|+|+|.|||+||+... .+.+.        .++..+|||+.
T Consensus        81 i~ivvG~p~~~~~~lyNsa~vi~~G~il~~y~K~hL~~~~~f~E~r~f~pG~~~~-~~~~~--------~~g~~~p~g~~  151 (634)
T 3ilv_A           81 ITVSLGLPMRIAGITYNCVCLVENGIVKGFSAKQFLANEGVHYETRWFTAWPRNH-TTTFL--------YNDVKYPFGDV  151 (634)
T ss_dssp             SEEEEEEEEEETTEEEEEEEEEETTEEEEEEECSSCCCSTTCCGGGTCCCCCTTC-EEEEE--------ETTEEEEEESC
T ss_pred             CEEEEeeeEeeCCCccEEEEEEECCeEEEEEcCEeCCCCCCcChhhhcCCCCccc-cceec--------ccCcccccCCe
Confidence            9999999999999999999999999999999999999999999999999998641 11221        25678999999


Q ss_pred             eeeeehhhHHHHHhhhhcCCCCCcccccccceEEEecCCCchhhhhhhhHHHHHHhhhccccceEEEeecCCCCCCceee
Q 004727          161 FIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNHQGCDGGRLY  240 (733)
Q Consensus       161 vf~~~~~riGv~ICeDlw~p~~~~~~la~~GadiIlnpSas~~~~gk~~~r~~li~~~A~~~g~~~vyaN~~G~~~~~~~  240 (733)
                      +|+++++|||++||||+|||+.+++.++++|||||+|||+|++..||..+|..++++||.+|+++|||||++|+++++++
T Consensus       152 vf~~~g~~iG~~IC~D~~fPe~~~r~la~~GAdii~~psas~~~~gk~~~~~~l~~~rA~e~~~~vv~aN~~G~~~~~~~  231 (634)
T 3ilv_A          152 LYNVKDARIGFEICEDAWRTDRVGIRHYEKGATLVLNPSASHFAFGKSAIRYDLVIGGSERFDCTYVYANLLGNEAGRMI  231 (634)
T ss_dssp             CEEETTEEEEECCTTC----------CGGGTCSEEEEEECCBCCTTHHHHHHHHHHHHHHHTTSEEEEEECEEESSSSCE
T ss_pred             EEEECCEEEEEEEeccccCChHHHHHHHHCCCcEEEEecCCccccCcHHHHHHHHHHHHHHhCCEEEEEcCccCCCCceE
Confidence            99999999999999999999868889999999999999999999999999999999999999999999999999877899


Q ss_pred             ecceeEEEEcCeEeeecccccccceEEEEEEeehhhhcccccchhhHHhhhhcCCCCccceecccccccCccCCCCCCCc
Q 004727          241 FDGCSCVVVNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSISSFQEQASCKTKIPSVAVPYNLCQPFNLKMSLSSPL  320 (733)
Q Consensus       241 fdG~S~I~p~G~vla~~~~f~~~~~~vv~a~vDl~~~~~~R~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  320 (733)
                      |+|+|+|+|+|++++++++|+++++++++++||++.++..|.+   +                                 
T Consensus       232 f~G~S~I~p~G~vla~~~~f~~~~~~vi~a~iDl~~~~~~R~~---~---------------------------------  275 (634)
T 3ilv_A          232 YDGEVLIAHKGKLIQRNDRLSFKNVNLIYADIATDSAETPETV---L---------------------------------  275 (634)
T ss_dssp             EECCEEEEETTEEEEECCSSCSSSEEEEEEEEEC----------------------------------------------
T ss_pred             EcceEEEEcCCeEEEECCCCCCCCceEEEEEEEhHHhHHHHhc---C---------------------------------
Confidence            9999999999999999999986567899999999988765531   0                                 


Q ss_pred             ccccCCcchhhhcCcchhhhHHhhhcCCceeeeecCCCCCchhHHHHHhhhHHHHHHHHhcCchhhhhhHh-----Hhcc
Q 004727          321 KINYHSPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAI-----RIGH  395 (733)
Q Consensus       321 ~~~~~~~~eei~~~~~~~L~dyl~~sg~~g~vl~LSGGiDSa~~A~l~~~m~~~~~~al~~G~~~v~~~~~-----~~~~  395 (733)
                      +..++.|+|||+.+++|||||||+++|.+++|||||||+|||++|+||++||+++++++  |+++|+++++     +|..
T Consensus       276 ~~~~~~~~~~~~~~~~~~l~d~~~~~g~~~vvlglSGGvDSsv~A~Lv~~~~~~a~~al--G~~~v~~~~~~~~~~~~~~  353 (634)
T 3ilv_A          276 TQDDLEKEFEFWEATSLGLFDYMRKSRSKGFVLSLSGGADSSACAIMVAEMIRKGLKEL--GLTAFLQKSNMETLFDLPA  353 (634)
T ss_dssp             ----CCHHHHHHHHHHHHHHHHHHHTTCCSEEEECCSSHHHHHHHHHHHHHHHHHHHHH--CHHHHHHHHTCGGGCCSSC
T ss_pred             CCCCCCcHHHHHHHHHHHHHHHHHHhCCCeEEEEccCCHHHHHHHHHHHHHHHHHHHHh--Cchhhhhhhhccccccccc
Confidence            01245788999999999999999999999999999999999999999999999999999  6899998876     4544


Q ss_pred             ccCCCCCCChHHHHhhhheeeeccCcCChHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhhhCCCCceeecCCcc
Q 004727          396 YANGEFPTDSREFAKRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSN  475 (733)
Q Consensus       396 ~~~~~~p~~~~~~~~~~~~~v~m~~~~ss~~t~~~A~~lA~~lGi~~~~i~I~~~~~~~~~~~~~~~g~~p~~~~~gg~~  475 (733)
                      ..+...|.+++++|+.+++|||||+.+|+..++++|+++|+.||++|++|||+++++++.+.|.+.+|++|.|+      
T Consensus       354 ~~~~~~~~~~~~~~~~~~~~v~m~~~~ss~~~~~dA~~la~~LGi~~~~IdI~~~~~~~~~~~~~~~g~~p~~~------  427 (634)
T 3ilv_A          354 LQHLPFEEQAKKITAVFLTTAYQSTRNSGDETYTSAKTLAESIGATFYNWSVDEEIEQYKATIENVIERPLTWE------  427 (634)
T ss_dssp             SSCTTSHHHHHHHHHHHEEEEEEECTTCCSHHHHHHHHHHHHHTCEEEEEECHHHHHHHHHHHHHHTTSCCCTT------
T ss_pred             ccccccccchhHhhhheeeeeecCCCCCCHHHHHHHHHHHHHhCCcEEEEccHHHHHHHHHHHHHhhCCCcccc------
Confidence            33345677789999999999999999999999999999999999999999999999999999999889888653      


Q ss_pred             ccccchhhHHHHHHHHHHHHHHhhcccccCCCcEEEEeccCccccccccccccccCCCCCCCCCCCCcHHhHHHHHHHHH
Q 004727          476 VENLGLQNIQARIRMVLAFMLASLLPWVHNKPGFYLVLGSSNVDEGLRGYLTKYDCSSADINPIGSISKQDLRTFLRWAA  555 (733)
Q Consensus       476 ~~~~a~~NiqaR~R~~~~~~~A~~~~~~~~~~g~~lVlgT~N~sE~~~Gy~T~~gd~~~~i~Pi~~l~K~~vr~l~~~~~  555 (733)
                      ..+++.+|+|+|+||.++|.+||..        |.+|+||||+||.++||+|+|||++++++||++|+|++||+|++|++
T Consensus       428 ~~~~~~~N~qaR~R~~~l~~~A~~~--------g~lvlgTgnksE~~~Gy~T~ygD~~~~~~Pl~~l~KteVr~la~~l~  499 (634)
T 3ilv_A          428 KDDITLQNIQARGRAPIIWMLTNVK--------QALLITTSNRSEGDVGYATMDGDTAGGIAPIAGVDKDFIRSWLRWAE  499 (634)
T ss_dssp             TCHHHHHHHHHHTTHHHHHHHHHHH--------TCEEBCCCCHHHHHTTCSCTTTTTCSSBBTTTTSCHHHHHHHHHHHH
T ss_pred             cCcchhhhhhHHHHHHHHHHHHHhc--------CCEEeccCchhhHhhCCccccCCcccCCcccCCCcHHHHHHHHHHHH
Confidence            4789999999999999999999876        45999999999999999999999999999999999999999999998


Q ss_pred             hhcCCccchhhhcCCCCcccccccccccccccccccCChhhhhhhcccccccccchhhHhHHHHHhhcCCCChhHHHHHH
Q 004727          556 THLGYSSLAEIEAAPPTAELEPIRSNYSQLDEVDMGMTYEELSVYGRLRKVFHCGPVTMFKNLCYRWGARLTPSEVAEKV  635 (733)
Q Consensus       556 ~~~g~p~l~~i~~~~psaeL~p~~~~~~Q~DE~~lG~~Y~~l~~~~~l~~~~~~~p~~~~~~l~~~~~~~~~~~~i~~~v  635 (733)
                      +..|+|+|++|++|||||||+|.+  ++|+||++| |||++||.|+++++..+++|.+|+.++.+.|+  +++++|++||
T Consensus       500 ~~~glp~l~~i~~k~pSaeL~p~~--~~q~de~~l-~~Y~~lD~~l~~~~~~~~~~~~i~~~~~~~~~--~~~~~i~~~v  574 (634)
T 3ilv_A          500 KNRNQHGLHIVNKLAPTAELRPSE--YTQTDERDL-MPYDVLARIERKAIKERLSPVQVYTALLTEGP--YTKNEFKYWV  574 (634)
T ss_dssp             HHSCCGGGSSCC---------------------CC-CTTTHHHHHHHHHTTSCCCHHHHHHHHHHHCS--SCHHHHHHHH
T ss_pred             HcCCCchHHHHcCCCCCcCcCcCC--CCCCCcccc-CCHHHHHHHHHHHHHcCCCHHHHHHHhhhccC--CCHHHHHHHH
Confidence            888999999999999999999953  689999999 99999999999999999999999999999996  9999999999


Q ss_pred             HhhhheeeeccceeeecCccccccCCCCCCCccchhhhhhcccCccccccHHHHHHhhhCCC
Q 004727          636 KQFFKYYSINRHKMTVLTPSYHAESYSPDDNRFDLRQFLYNARWPYQFRKIDELVKELDGEK  697 (733)
Q Consensus       636 ~~f~~~~~~n~hK~~~~~ps~h~~~~~~d~~r~d~r~~~~~~~~~~~~~~~~~~~~~~~~~~  697 (733)
                      ++||++|.+|||||+++||++|+++||+     |||.|+   |+|+.+++|.+||++|+..-
T Consensus       575 ~~~~~~~~~~~~Kr~~~pp~~~v~~~~~-----~pr~~~---r~Pi~~~~~~~~~~~~~~~~  628 (634)
T 3ilv_A          575 KKFFRLWSINQWKRERLAPSFHMDDFNI-----DPRSWY---RFPILSSGFAKELNDLDQEG  628 (634)
T ss_dssp             HHHHHHHHHTHHHHTTCCCBCCCSSCCC-----CTTTTC---CCCSSCCTTHHHHHHTTC--
T ss_pred             HHHHHHHHHhHhccccCCCceEEeCCCC-----CCCCce---eCCcCCccHHHHHHHHHhcc
Confidence            9999999999999999999999999999     999999   99999999999999998643
>4f4h_A Glutamine dependent NAD+ synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ligase; 1.75A {Burkholderia thailandensis} Back     alignment and structure
>3sdb_A Glutamine-dependent NAD(+) synthetase; glutamine-amidotransferase, glutaminase, glutamine-dependent synthetase, ligase; 2.00A {Mycobacterium tuberculosis} PDB: 3seq_A* 3sez_A* 3szg_A* 3dla_A* 3syt_A* Back     alignment and structure
>3n05_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, protein structure initiative, P nysgrc; 2.35A {Streptomyces avermitilis} Back     alignment and structure
>3q4g_A NH(3)-dependent NAD(+) synthetase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha beta; 2.40A {Vibrio cholerae} SCOP: c.26.2.0 Back     alignment and structure
>3dpi_A NAD+ synthetase; ssgcid, decode, structural genomics, PSI, protein structure initiative; 2.20A {Burkholderia pseudomallei} SCOP: c.26.2.0 Back     alignment and structure
>1wxi_A NH(3)-dependent NAD(+) synthetase; NADE, E.coli, ligase; HET: AMP; 1.70A {Escherichia coli} SCOP: c.26.2.1 PDB: 1wxf_A 1wxg_A* 1wxh_A* 1wxe_A* 3hmq_A* Back     alignment and structure
>1kqp_A NAD+ synthase, NH(3)-dependent NAD(+) synthetase, SPOR; ligase, amidotransferase, ATP pyrophosphatase, NAD-adenylate; HET: ADJ; 1.03A {Bacillus subtilis} SCOP: c.26.2.1 PDB: 1fyd_A* 1ifx_A* 1ee1_A* 1ih8_A* 1nsy_A* 2nsy_A* 2pzb_A 2pza_A* 2pz8_A Back     alignment and structure
>3fiu_A NH(3)-dependent NAD(+) synthetase; rossman fold, adenine nucleotide alpha hydrolase-like, ATP- binding, ligase, nucleotide-binding; HET: AMP; 1.85A {Francisella tularensis subsp} Back     alignment and structure
>3p52_A NH(3)-dependent NAD(+) synthetase; structural genomics, center for structural genomics of infec diseases, NADE, CSGI; 2.74A {Campylobacter jejuni} SCOP: c.26.2.0 Back     alignment and structure
>3ivz_A Nitrilase; alpha-beta sandwich, hydrolase; 1.57A {Pyrococcus abyssi} SCOP: d.160.1.2 PDB: 3iw3_A 3ki8_A 3klc_A 1j31_A Back     alignment and structure
>3p8k_A Hydrolase, carbon-nitrogen family; HET: PGE; 1.70A {Staphylococcus aureus subsp} Back     alignment and structure
>3hkx_A Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alpha dimeric sandwich hydrolase; 1.66A {Nesterenkonia SP} Back     alignment and structure
>1xng_A NH(3)-dependent NAD(+) synthetase; amidotransferase, ligase; HET: DND ATP; 1.70A {Helicobacter pylori} SCOP: c.26.2.1 PDB: 1xnh_A Back     alignment and structure
>2e11_A Hydrolase; dimethylarsenic inhibi complex, cacodylate; 1.73A {Xanthomonas campestris PV} Back     alignment and structure
>2w1v_A Nitrilase-2, nitrilase homolog 2; hydrolase; 1.49A {Mus musculus} Back     alignment and structure
>2e18_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, NPPSFA, national project on Pro structural and functional analyses; 2.10A {Pyrococcus horikoshii} Back     alignment and structure
>1f89_A 32.5 kDa protein YLR351C; nitrilase, dimer, structural genomics, four layer sandwich, PSI, protein structure initiative; 2.40A {Saccharomyces cerevisiae} SCOP: d.160.1.1 Back     alignment and structure
>1uf5_A N-carbamyl-D-amino acid amidohydrolase; HET: CDT; 1.60A {Agrobacterium SP} SCOP: d.160.1.2 PDB: 1uf4_A* 1uf7_A* 1uf8_A* 1erz_A 1fo6_A 2ggl_A 2ggk_A Back     alignment and structure
>2vhh_A CG3027-PA; hydrolase; 2.8A {Drosophila melanogaster} PDB: 2vhi_A Back     alignment and structure
>1ems_A Nitfhit, NIT-fragIle histidine triad fusion protein; WORM, nitrilase, nucleotide-binding protein, cancer; 2.80A {Caenorhabditis elegans} SCOP: d.13.1.1 d.160.1.1 Back     alignment and structure
>2dyu_A Formamidase; AMIF, CEK, catalytic triad, helicobacter pylori aliphatic amidase, hydrolase; 1.75A {Helicobacter pylori} PDB: 2dyv_A 2e2l_A 2e2k_A Back     alignment and structure
>2uxy_A Aliphatic amidase; nitrilase superfamily, hydrolase, acyl transfer, thiol enzymes, hydroxamic acid; HET: C3Y; 1.25A {Pseudomonas aeruginosa} PDB: 2plq_A Back     alignment and structure
>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens} Back     alignment and structure
>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1 Back     alignment and structure
>2hma_A Probable tRNA (5-methylaminomethyl-2-thiouridylat methyltransferase; alpha-beta, beta barrel, structural genomics, PSI-2; HET: MSE SAM; 2.41A {Streptococcus pneumoniae} Back     alignment and structure
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A* Back     alignment and structure
>2der_A TRNA-specific 2-thiouridylase MNMA; protein-RNA complex, transferase/RNA complex; 3.10A {Escherichia coli} PDB: 2det_A 2deu_A* Back     alignment and structure
>2dpl_A GMP synthetase, GMP synthase [glutamine-hydrolyzing] subunit B; pyrococcus horikoshii OT3, structural genomics, NPPSFA; 1.43A {Pyrococcus horikoshii} PDB: 2z0c_A 3a4i_A Back     alignment and structure
>3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum} Back     alignment and structure
>3bl5_A Queuosine biosynthesis protein QUEC; PREQ1 biosynthesis, RNA modification, tRNA, hydrolase; 2.95A {Bacillus subtilis} Back     alignment and structure
>2pg3_A Queuosine biosynthesis protein QUEC; YP_049261.1, hypothetical protein, structural genomics, JOIN for structural genomics; 2.40A {Pectobacterium atrosepticum SCRI1043} SCOP: c.26.2.1 Back     alignment and structure
>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii} Back     alignment and structure
>2c5s_A THII, probable thiamine biosynthesis protein THII; RNA-binding protein, RNA binding protein, tRNA modification, 4-thiouridine synthase; HET: AMP; 2.5A {Bacillus anthracis} SCOP: c.26.2.6 d.308.1.1 Back     alignment and structure
>1kor_A Argininosuccinate synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: ANP ARG; 1.95A {Thermus thermophilus} SCOP: c.26.2.1 d.210.1.1 PDB: 1j1z_A* 1j21_A* 1kh1_A 1kh2_A* 1kh3_A* 1j20_A* Back     alignment and structure
>3k32_A Uncharacterized protein MJ0690; predicted subunit of tRNA methyltransferase, methanocaldococcus jannaschii DSM , PSI- 2; 2.50A {Methanocaldococcus jannaschii} Back     alignment and structure
>1vl2_A Argininosuccinate synthase; TM1780, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics, ligase; 1.65A {Thermotoga maritima} SCOP: c.26.2.1 d.210.1.1 Back     alignment and structure
>2nz2_A Argininosuccinate synthase; amino-acid biosynthesis, aspartate, citrulline, ST genomics, structural genomics consortium, SGC, ligase; HET: CIR; 2.40A {Homo sapiens} Back     alignment and structure
>1sur_A PAPS reductase; assimilatory sulfate reduction, 3-phospho-adenylyl-sulfate reductase, oxidoreductase; 2.00A {Escherichia coli} SCOP: c.26.2.2 Back     alignment and structure
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A* Back     alignment and structure
>1k92_A Argininosuccinate synthase, argininosuccinate SY; N-type ATP pyrophosphatase, ligase; 1.60A {Escherichia coli} SCOP: c.26.2.1 d.210.1.1 PDB: 1k97_A* 1kp2_A* 1kp3_A* Back     alignment and structure
>2o8v_A Phosphoadenosine phosphosulfate reductase; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli} Back     alignment and structure
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus} Back     alignment and structure
>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase, PP-type, putative cell cycle PR PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1 Back     alignment and structure
>1vbk_A Hypothetical protein PH1313; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.90A {Pyrococcus horikoshii} SCOP: c.26.2.6 d.308.1.1 Back     alignment and structure
>1jgt_A Beta-lactam synthetase; asparagine synthetase, clavulanic AC AMPCPP, CEA, carboxyethylarginine, hydrolase; HET: APC CMA; 1.95A {Streptomyces clavuligerus} SCOP: c.26.2.1 d.153.1.1 PDB: 1m1z_A 1mb9_A* 1mbz_A* 1mc1_A* Back     alignment and structure
>1q15_A CARA; CMPR, (2S,5S)-5-carboxymethylproline, B-LS, B-lactam synthetase, AS-B, class B asparagine synthetase, AMP-CPP; 2.30A {Pectobacterium carotovorum} SCOP: c.26.2.1 d.153.1.1 PDB: 1q19_A* Back     alignment and structure
>1ct9_A Asparagine synthetase B; amidotransferase, substrate channeling, asparagine biosynthesis, ligase; HET: AMP GLN; 2.00A {Escherichia coli} SCOP: c.26.2.1 d.153.1.1 Back     alignment and structure
>2wsi_A FAD synthetase; transferase, nucleotidyltransferase, nucleotide-binding; HET: FAD; 1.90A {Saccharomyces cerevisiae} Back     alignment and structure
>2oq2_A Phosphoadenosine phosphosulfate reductase; sulfate reduction, PAPS reductase, oxidoreductase; HET: A3P; 2.10A {Saccharomyces cerevisiae} Back     alignment and structure
>1zun_A Sulfate adenylyltransferase subunit 2; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae} SCOP: c.26.2.2 Back     alignment and structure
>2goy_A Adenosine phosphosulfate reductase; iron sulfur cluster, nucleotide binding, thiosulfonate intermediate, oxidoreductase; HET: ADX; 2.70A {Pseudomonas aeruginosa} Back     alignment and structure
>3rjz_A N-type ATP pyrophosphatase superfamily; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein; 2.30A {Pyrococcus furiosus} SCOP: c.26.2.1 PDB: 3h7e_A 3rk0_A* 3rk1_A* 1ru8_A 2d13_A Back     alignment and structure
>3fwk_A FMN adenylyltransferase; FAD biosynthesis, alpha/beta protein, rossmann- like fold, APO-form, extended loop region; HET: BGC; 1.20A {Candida glabrata} PDB: 3g59_A* 3g5a_A* 3g6k_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 733
d1kqpa_271 c.26.2.1 (A:) NH3-dependent NAD+-synthetase {Bacil 2e-27
d1wxia1274 c.26.2.1 (A:2-275) NH3-dependent NAD+-synthetase { 8e-21
d1uf5a_303 d.160.1.2 (A:) N-carbamoyl-D-aminoacid amidohydrol 5e-17
d1j31a_262 d.160.1.2 (A:) Hypothetical protein PH0642 {Archae 2e-15
d1xnga1255 c.26.2.1 (A:3-257) NH3-dependent NAD+-synthetase { 2e-14
d1emsa2271 d.160.1.1 (A:10-280) NIT-FHIT fusion protein, N-te 3e-14
d1f89a_281 d.160.1.1 (A:) hypothetical protein yl85 {Baker's 9e-12
>d1kqpa_ c.26.2.1 (A:) NH3-dependent NAD+-synthetase {Bacillus subtilis [TaxId: 1423]} Length = 271 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: N-type ATP pyrophosphatases
domain: NH3-dependent NAD+-synthetase
species: Bacillus subtilis [TaxId: 1423]

 Score =  110 bits (274), Expect = 2e-27
 Identities = 74/326 (22%), Positives = 131/326 (40%), Gaps = 81/326 (24%)

Query: 326 SPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQ 385
            P++EI      +L  Y++++GA GF+L +SGG DS     + G + QL V+ I      
Sbjct: 17  DPKQEIED-RVNFLKQYVKKTGAKGFVLGISGGQDS----TLAGRLAQLAVESIR----- 66

Query: 386 VKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDV 445
                         E   D++  A R+ +      +++    + +               
Sbjct: 67  --------------EEGGDAQFIAVRLPHGTQQDEDDAQLALKFI-------KPDKSWKF 105

Query: 446 SIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQNIQARIRMVLAFMLASLLPWVHN 505
            I + VSAF   +Q  TG +      G          N++AR RM+  + +         
Sbjct: 106 DIKSTVSAFSDQYQQETGDQLTDFNKG----------NVKARTRMIAQYAIG-------G 148

Query: 506 KPGFYLVLGSSNVDEGLRGYLTKYDCSSADINPIGSISKQDLRTFLRWAATHLGYSSLAE 565
           + G   VLG+ +  E + G+ TKY    AD+ P+  ++K+  RT L+             
Sbjct: 149 QEGLL-VLGTDHAAEAVTGFFTKYGDGGADLLPLTGLTKRQGRTLLKELGAP------ER 201

Query: 566 IEAAPPTAELEPIRSNYSQLDEVDMGMTYEELSVYGRLRKVFHCGPVTMFKNLCYRWGAR 625
           +    PTA+L  +     Q DE ++G++Y+E+  Y   ++V                   
Sbjct: 202 LYLKEPTADL--LDEKPQQSDETELGISYDEIDDYLEGKEV------------------- 240

Query: 626 LTPSEVAEKVKQFFKYYSINRHKMTV 651
              ++V+E ++   K YS+  HK  V
Sbjct: 241 --SAKVSEALE---KRYSMTEHKRQV 261
>d1wxia1 c.26.2.1 (A:2-275) NH3-dependent NAD+-synthetase {Escherichia coli [TaxId: 562]} Length = 274 Back     information, alignment and structure
>d1uf5a_ d.160.1.2 (A:) N-carbamoyl-D-aminoacid amidohydrolase {Agrobacterium sp. [TaxId: 361]} Length = 303 Back     information, alignment and structure
>d1j31a_ d.160.1.2 (A:) Hypothetical protein PH0642 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 262 Back     information, alignment and structure
>d1xnga1 c.26.2.1 (A:3-257) NH3-dependent NAD+-synthetase {Helicobacter pylori [TaxId: 210]} Length = 255 Back     information, alignment and structure
>d1emsa2 d.160.1.1 (A:10-280) NIT-FHIT fusion protein, N-terminal domain {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 271 Back     information, alignment and structure
>d1f89a_ d.160.1.1 (A:) hypothetical protein yl85 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 281 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query733
d1kqpa_271 NH3-dependent NAD+-synthetase {Bacillus subtilis [ 100.0
d1wxia1274 NH3-dependent NAD+-synthetase {Escherichia coli [T 100.0
d1xnga1255 NH3-dependent NAD+-synthetase {Helicobacter pylori 100.0
d1j31a_262 Hypothetical protein PH0642 {Archaeon Pyrococcus h 100.0
d1uf5a_303 N-carbamoyl-D-aminoacid amidohydrolase {Agrobacter 100.0
d1emsa2271 NIT-FHIT fusion protein, N-terminal domain {Nemato 100.0
d1f89a_281 hypothetical protein yl85 {Baker's yeast (Saccharo 100.0
d1gpma1197 GMP synthetase, central domain {Escherichia coli [ 99.5
d2c5sa1218 Thiamine biosynthesis protein ThiI, C-terminal dom 98.98
d1wy5a1216 TilS-like protein Aq_1887 {Aquifex aeolicus [TaxId 98.45
d1ni5a1227 tRNA-Ile-lysidine synthetase, TilS, N-terminal dom 98.38
d2pg3a1230 Queuosine biosynthesis protein QueC {Erwinia carot 98.31
d1j20a1165 Argininosuccinate synthetase, N-terminal domain {T 98.22
d1jgta1299 beta-Lactam synthetase {Streptomyces clavuligerus 98.15
d1k92a1188 Argininosuccinate synthetase, N-terminal domain {E 98.03
d1vl2a1168 Argininosuccinate synthetase, N-terminal domain {T 97.97
d1q15a1296 beta-Lactam synthetase {Pectobacterium carotovorum 97.64
d1zuna1211 Sulfate adenylyltransferase subunit 2, CysD {Pseud 97.54
d1sura_215 Phosphoadenylyl sulphate (PAPS) reductase {Escheri 97.3
d1ct9a1324 Asparagine synthetase B, C-terminal domain {Escher 97.02
d1vbka1132 Hypothetical protein PH1313, C-terminal domain {Ar 95.66
d2d13a1226 Hypothetical protein PH1257 {Archaeon Pyrococcus h 93.97
>d1kqpa_ c.26.2.1 (A:) NH3-dependent NAD+-synthetase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: N-type ATP pyrophosphatases
domain: NH3-dependent NAD+-synthetase
species: Bacillus subtilis [TaxId: 1423]

Probab=100.00  E-value=2.1e-53  Score=443.17  Aligned_cols=249  Identities=31%  Similarity=0.498  Sum_probs=202.7

Q ss_pred             CcchhhhcCcchhhhHHhhhcCCceeeeecCCCCCchhHHHHHhhhHHHHHHHHhc--CchhhhhhHhHhccccCCCCCC
Q 004727          326 SPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISN--GDEQVKADAIRIGHYANGEFPT  403 (733)
Q Consensus       326 ~~~eei~~~~~~~L~dyl~~sg~~g~vl~LSGGiDSa~~A~l~~~m~~~~~~al~~--G~~~v~~~~~~~~~~~~~~~p~  403 (733)
                      .|+|+|. .+++|||||++++|++|+|||||||||||+||+|+    ++++.++..  |+++                  
T Consensus        17 d~~e~i~-~~v~~lrdy~~ksg~~gvvvglSGGIDSAv~a~L~----~~A~~~~~~~~g~~~------------------   73 (271)
T d1kqpa_          17 DPKQEIE-DRVNFLKQYVKKTGAKGFVLGISGGQDSTLAGRLA----QLAVESIREEGGDAQ------------------   73 (271)
T ss_dssp             CHHHHHH-HHHHHHHHHHHHHTCCEEEEECCSSHHHHHHHHHH----HHHHHHHHHTTCCCE------------------
T ss_pred             CHHHHHH-HHHHHHHHHHHHhCCCeEEEECCCCHHHHHHHHHH----HHHHHHHHHhcCCce------------------
Confidence            5677775 67999999999999999999999999999999886    333333211  3332                  


Q ss_pred             ChHHHHhhhheeeeccCcCChHHHHHHHHHHHHHhcccc-cccchhHHHHHHHHHHHhhhCCCCceeecCCccccccchh
Q 004727          404 DSREFAKRIFYTVFMGSENSSQETRMLAKKLADEIGSWH-LDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQ  482 (733)
Q Consensus       404 ~~~~~~~~~~~~v~m~~~~ss~~t~~~A~~lA~~lGi~~-~~i~I~~~~~~~~~~~~~~~g~~p~~~~~gg~~~~~~a~~  482 (733)
                               ++++.||+..  ..+.++|+.+++.+++.+ .+++|+++++++.+.+...++..          ..+++.+
T Consensus        74 ---------v~~v~mP~~~--~~~~~~a~~~~~~~~~~~~~~i~I~~~~~~~~~~~~~~~~~~----------~~~~~~~  132 (271)
T d1kqpa_          74 ---------FIAVRLPHGT--QQDEDDAQLALKFIKPDKSWKFDIKSTVSAFSDQYQQETGDQ----------LTDFNKG  132 (271)
T ss_dssp             ---------EEEEECCSSS--CTTHHHHHHHHHHHCCSEEEECCCHHHHHHHHHHHHHHHSCC----------CCHHHHH
T ss_pred             ---------eeeeecCccc--cchhhhHHHHHHHhccccceEEeehHHHHhHHHHHHHhhhcc----------ccchhcc
Confidence                     5899999543  345678999999999976 46899999999988888765533          3679999


Q ss_pred             hHHHHHHHHHHHHHHhhcccccCCCcEEEEeccCccccccccccccccCCCCCCCCCCCCcHHhHHHHHHHHHhhcCCcc
Q 004727          483 NIQARIRMVLAFMLASLLPWVHNKPGFYLVLGSSNVDEGLRGYLTKYDCSSADINPIGSISKQDLRTFLRWAATHLGYSS  562 (733)
Q Consensus       483 NiqaR~R~~~~~~~A~~~~~~~~~~g~~lVlgT~N~sE~~~Gy~T~~gd~~~~i~Pi~~l~K~~vr~l~~~~~~~~g~p~  562 (733)
                      |+|||+||+++|++||..        |++|+||||+||.++||+|||||+++|++||++|+|++||+|++|    +|+| 
T Consensus       133 NiqaRiR~~~Ly~~An~~--------g~lvlgTgNksE~~~Gy~TkyGD~~~di~Pi~dL~K~eV~~La~~----lgip-  199 (271)
T d1kqpa_         133 NVKARTRMIAQYAIGGQE--------GLLVLGTDHAAEAVTGFFTKYGDGGADLLPLTGLTKRQGRTLLKE----LGAP-  199 (271)
T ss_dssp             HHHHHHHHHHHHHHHHHH--------TCEEBCCCCHHHHTTTCSCTTTTTCCSBCTTTTCCHHHHHHHHHH----TTCC-
T ss_pred             ccccccccchhHHhHhhc--------CCccCCCcchhhhhcchhhhhhhccchhccccccCHHHHHHHHHh----hhhc-
Confidence            999999999999999875        579999999999999999999999999999999999999999766    6765 


Q ss_pred             chhhhcCCCCcccccccccccccccccccCChhhhhhhcccccccccchhhHhHHHHHhhcCCCChhHHHHHHHhhhhee
Q 004727          563 LAEIEAAPPTAELEPIRSNYSQLDEVDMGMTYEELSVYGRLRKVFHCGPVTMFKNLCYRWGARLTPSEVAEKVKQFFKYY  642 (733)
Q Consensus       563 l~~i~~~~psaeL~p~~~~~~Q~DE~~lG~~Y~~l~~~~~l~~~~~~~p~~~~~~l~~~~~~~~~~~~i~~~v~~f~~~~  642 (733)
                       ++|+++|||||||+.  ..+|+||++|||||++||.|++.+                    .. +.++.++|+   ++|
T Consensus       200 -~~ii~k~PSaeL~~~--~~~q~DE~~lg~~Y~~lD~~l~~~--------------------~~-~~~~~~~i~---~~~  252 (271)
T d1kqpa_         200 -ERLYLKEPTADLLDE--KPQQSDETELGISYDEIDDYLEGK--------------------EV-SAKVSEALE---KRY  252 (271)
T ss_dssp             -THHHHSCCBCCCCSS--STTCBHHHHHSSCHHHHHHHHTTC--------------------CC-CHHHHHHHH---HHH
T ss_pred             -ccccccCCccccccC--CCCCCCHHhcCCCHHHHHHHHhcc--------------------CC-CHHHHHHHH---HHH
Confidence             999999999999862  238999999999999999997522                    12 345555555   468


Q ss_pred             eeccceeeecCccccccC
Q 004727          643 SINRHKMTVLTPSYHAES  660 (733)
Q Consensus       643 ~~n~hK~~~~~ps~h~~~  660 (733)
                      .+|+|||+ + |..|.++
T Consensus       253 ~~~~hKR~-~-P~~~f~~  268 (271)
T d1kqpa_         253 SMTEHKRQ-V-PASMFDD  268 (271)
T ss_dssp             HHTGGGGS-S-CBCTTCC
T ss_pred             HHHHhccC-C-CCCcccc
Confidence            89999996 3 4445544
>d1wxia1 c.26.2.1 (A:2-275) NH3-dependent NAD+-synthetase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1xnga1 c.26.2.1 (A:3-257) NH3-dependent NAD+-synthetase {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure
>d1j31a_ d.160.1.2 (A:) Hypothetical protein PH0642 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1uf5a_ d.160.1.2 (A:) N-carbamoyl-D-aminoacid amidohydrolase {Agrobacterium sp. [TaxId: 361]} Back     information, alignment and structure
>d1emsa2 d.160.1.1 (A:10-280) NIT-FHIT fusion protein, N-terminal domain {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1f89a_ d.160.1.1 (A:) hypothetical protein yl85 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1gpma1 c.26.2.1 (A:208-404) GMP synthetase, central domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2c5sa1 c.26.2.6 (A:174-391) Thiamine biosynthesis protein ThiI, C-terminal domain {Bacillus anthracis [TaxId: 1392]} Back     information, alignment and structure
>d1wy5a1 c.26.2.5 (A:1-216) TilS-like protein Aq_1887 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1ni5a1 c.26.2.5 (A:0-226) tRNA-Ile-lysidine synthetase, TilS, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2pg3a1 c.26.2.1 (A:1-230) Queuosine biosynthesis protein QueC {Erwinia carotovora [TaxId: 554]} Back     information, alignment and structure
>d1j20a1 c.26.2.1 (A:1-165) Argininosuccinate synthetase, N-terminal domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1jgta1 c.26.2.1 (A:210-508) beta-Lactam synthetase {Streptomyces clavuligerus [TaxId: 1901]} Back     information, alignment and structure
>d1k92a1 c.26.2.1 (A:1-188) Argininosuccinate synthetase, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1vl2a1 c.26.2.1 (A:2-169) Argininosuccinate synthetase, N-terminal domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1q15a1 c.26.2.1 (A:206-501) beta-Lactam synthetase {Pectobacterium carotovorum [TaxId: 554]} Back     information, alignment and structure
>d1zuna1 c.26.2.2 (A:1-211) Sulfate adenylyltransferase subunit 2, CysD {Pseudomonas syringae pv. tomato [TaxId: 323]} Back     information, alignment and structure
>d1sura_ c.26.2.2 (A:) Phosphoadenylyl sulphate (PAPS) reductase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ct9a1 c.26.2.1 (A:193-516) Asparagine synthetase B, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1vbka1 c.26.2.6 (A:176-307) Hypothetical protein PH1313, C-terminal domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d2d13a1 c.26.2.1 (A:2-227) Hypothetical protein PH1257 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure