Citrus Sinensis ID: 004729
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 733 | 2.2.26 [Sep-21-2011] | |||||||
| Q9SMY8 | 990 | F-box/LRR-repeat protein | yes | no | 0.800 | 0.592 | 0.703 | 0.0 | |
| Q9CZV8 | 436 | F-box/LRR-repeat protein | yes | no | 0.481 | 0.809 | 0.255 | 1e-19 | |
| Q96IG2 | 436 | F-box/LRR-repeat protein | no | no | 0.481 | 0.809 | 0.255 | 2e-19 | |
| Q58DG6 | 436 | F-box/LRR-repeat protein | yes | no | 0.481 | 0.809 | 0.255 | 2e-19 | |
| Q9UKC9 | 423 | F-box/LRR-repeat protein | no | no | 0.470 | 0.815 | 0.260 | 2e-17 | |
| Q5R3Z8 | 423 | F-box/LRR-repeat protein | yes | no | 0.472 | 0.817 | 0.259 | 2e-17 | |
| Q8BH16 | 423 | F-box/LRR-repeat protein | no | no | 0.478 | 0.829 | 0.257 | 1e-16 | |
| A6H779 | 423 | F-box/LRR-repeat protein | no | no | 0.418 | 0.725 | 0.272 | 1e-16 | |
| Q9UJT9 | 491 | F-box/LRR-repeat protein | no | no | 0.435 | 0.649 | 0.251 | 6e-16 | |
| Q5BJ29 | 491 | F-box/LRR-repeat protein | no | no | 0.429 | 0.641 | 0.255 | 2e-15 |
| >sp|Q9SMY8|FBL15_ARATH F-box/LRR-repeat protein 15 OS=Arabidopsis thaliana GN=FBL15 PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 817 bits (2111), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 418/594 (70%), Positives = 489/594 (82%), Gaps = 7/594 (1%)
Query: 133 AVEDSQHKRAKVYSA-STGHYVTTGSSDAGASSSLAGGDYNVSQGSSVPGTGEIFCNYFT 191
A DS HKRAKVYS + V+ SSDAG S S + SS ++FC F
Sbjct: 107 ADHDSYHKRAKVYSGLAECRSVSGVSSDAGNSVSSVERTVSFGIASSSRTDTDMFCQNFI 166
Query: 192 WNSGGDGNPFDASGGNDGGDDNGTPKTEDLEIRMDLTDDLLHMVFSFLDYVDLCRAAIVC 251
N G D GDDNG+ TED E+ +DLTDDLLHMVFSFL++VDLCR+A+VC
Sbjct: 167 LNYN------RKDGKKDDGDDNGSSDTEDFEVHIDLTDDLLHMVFSFLNHVDLCRSAMVC 220
Query: 252 RQWRAASAHEDFWRCLNFENRKISVEQFEDVCQRYPNATEVNIYGAPAIHLLVMKAVSLL 311
RQWR ASAHEDFWR LNFEN +IS+EQFE++C RYPNATEVN+YGAPA++ L MKA + L
Sbjct: 221 RQWRVASAHEDFWRVLNFENIRISMEQFENMCSRYPNATEVNVYGAPAVNALAMKAATTL 280
Query: 312 RNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCR 371
RNLE LT+G+G + ++FF AL +C+ML+S+ V+DA LGNG QEI ++HD+LR L+ITKCR
Sbjct: 281 RNLEVLTIGKGHISESFFQALGECNMLRSVTVSDAILGNGAQEIHLSHDRLRELKITKCR 340
Query: 372 VMRVSIRCPQLEHLSLKRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESL 431
VMR+SIRCPQL LSLKRSNM+QA+LNCPLL LLDIASCHKL DAAIR AA SCPQLESL
Sbjct: 341 VMRLSIRCPQLRSLSLKRSNMSQAMLNCPLLQLLDIASCHKLLDAAIRSAAISCPQLESL 400
Query: 432 DMSNCSCVSDESLREIALSCANLRILNSSYCPNISLESVRLPMLTVLQLHSCEGITSASM 491
D+SNCSCVSDE+LREIA +CANL ILN+SYCPNISLESV LPMLTVL+LHSCEGITSASM
Sbjct: 401 DVSNCSCVSDETLREIAQACANLHILNASYCPNISLESVHLPMLTVLKLHSCEGITSASM 460
Query: 492 AAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCA 551
I++S LEVLELDNCNLLT+VSL L RLQ+I LVHCRKF DLNL+++MLSSI VSNC
Sbjct: 461 TWIANSPALEVLELDNCNLLTTVSLHLSRLQSISLVHCRKFTDLNLQSIMLSSITVSNCP 520
Query: 552 ALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPM 611
AL RI ITSN+L++L+LQKQENLT+L LQC LQEVDL+DCESL+NSVC++FSD GGCPM
Sbjct: 521 ALRRITITSNALRRLALQKQENLTTLVLQCHSLQEVDLSDCESLSNSVCKIFSDDGGCPM 580
Query: 612 LKSLVLDNCEGLTVVRFCSTSLVSLSLVGCRAITALELKCPILEKVCLDGCDHIESASFV 671
LKSL+LDNCE LT VRFC++SL SLSLVGCRA+T+LELKCP +E++CLDGCDH+E+A F
Sbjct: 581 LKSLILDNCESLTAVRFCNSSLASLSLVGCRAVTSLELKCPRIEQICLDGCDHLETAFFQ 640
Query: 672 PVALQSLNLGICPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFC 725
PVAL+SLNLGICPKLS L IEA +MV LELKGCGVLS+A I CPLLTSLDASFC
Sbjct: 641 PVALRSLNLGICPKLSVLNIEAPYMVSLELKGCGVLSEASIMCPLLTSLDASFC 694
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9CZV8|FXL20_MOUSE F-box/LRR-repeat protein 20 OS=Mus musculus GN=Fbxl20 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 98.6 bits (244), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 109/427 (25%), Positives = 184/427 (43%), Gaps = 74/427 (17%)
Query: 211 DDNGTPKT--------EDLEIRMDLTDDLLHMVFSFLDYVDLCRAAIVCRQWRAASAHED 262
D NG K+ ++ I L +LL +FSFLD V LCR A V R W +
Sbjct: 4 DVNGVTKSRFEMFSNSDEAVINKKLPKELLLRIFSFLDVVTLCRCAQVSRAWNVLALDGS 63
Query: 263 FWRCLNFEN--RKISVEQFEDVCQRYPN-ATEVNIYGAPAIHLLVMKAVSL-LRNLEALT 318
W+ ++ + R I E++ +R ++++ G + ++ + RN+E L+
Sbjct: 64 NWQRIDLFDFQRDIEGRVVENISKRCGGFLRKLSLRGCLGVGDNALRTFAQNCRNIEVLS 123
Query: 319 L-GRGQLGDAFFHALAD-CSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVS 376
L G + DA +L+ CS L+ L++ T IT + +S
Sbjct: 124 LNGCTKTTDATCTSLSKFCSKLRHLDLASCT------------------SITNMSLKALS 165
Query: 377 IRCPQLEHLSLK------RSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLES 430
CP LE L++ + + V C L L + C +L D A++ CP+L +
Sbjct: 166 EGCPLLEQLNISWCDQVTKDGIQALVRGCGGLKALFLKGCTQLEDEALKYIGAHCPELVT 225
Query: 431 LDMSNCSCVSDESLREIALSCANLRILNSSYCPNIS---LESV--RLPMLTVLQLHSCEG 485
L++ C ++DE L I C L+ L +S C NI+ L ++ P L +L++ C
Sbjct: 226 LNLQTCLQITDEGLITICRGCHKLQSLCASGCSNITDAILNALGQNCPRLRILEVARCSQ 285
Query: 486 ITSASMAAISHS-YMLEVLELDNC-----NLLTSVSLELPRLQNIRLVHCRKFADLNLRA 539
+T ++ + + LE ++L+ C + L +S+ PRLQ + L HC D +R
Sbjct: 286 LTDVGFTTLARNCHELEKMDLEECVQITDSTLIQLSIHCPRLQVLSLSHCELITDDGIRH 345
Query: 540 M--------MLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTD 591
+ L I + NC IT SL+ L C L+ ++L D
Sbjct: 346 LGNGACAHDQLEVIELDNCPL-----ITDASLEHLK------------SCHSLERIELYD 388
Query: 592 CESLTNS 598
C+ +T +
Sbjct: 389 CQQITRA 395
|
Substrate-recognition component of the SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin ligase complex. Isoform 3 regulates neural transmission by binding and ubiquitinating RIMS1, a modulator of presynaptic plasticity. Mus musculus (taxid: 10090) |
| >sp|Q96IG2|FXL20_HUMAN F-box/LRR-repeat protein 20 OS=Homo sapiens GN=FBXL20 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 97.8 bits (242), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 109/427 (25%), Positives = 183/427 (42%), Gaps = 74/427 (17%)
Query: 211 DDNGTPKT--------EDLEIRMDLTDDLLHMVFSFLDYVDLCRAAIVCRQWRAASAHED 262
D NG K+ ++ I L +LL +FSFLD V LCR A V R W +
Sbjct: 4 DVNGVTKSRFEMFSNSDEAVINKKLPKELLLRIFSFLDVVTLCRCAQVSRAWNVLALDGS 63
Query: 263 FWRCLNFEN--RKISVEQFEDVCQRYPN-ATEVNIYGAPAIHLLVMKAVSL-LRNLEALT 318
W+ ++ + R I E++ +R ++++ G + ++ + RN+E L
Sbjct: 64 NWQRIDLFDFQRDIEGRVVENISKRCGGFLRKLSLRGCLGVGDNALRTFAQNCRNIEVLN 123
Query: 319 L-GRGQLGDAFFHALAD-CSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVS 376
L G + DA +L+ CS L+ L++ T IT + +S
Sbjct: 124 LNGCTKTTDATCTSLSKFCSKLRHLDLASCT------------------SITNMSLKALS 165
Query: 377 IRCPQLEHLSLK------RSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLES 430
CP LE L++ + + V C L L + C +L D A++ CP+L +
Sbjct: 166 EGCPLLEQLNISWCDQVTKDGIQALVRGCGGLKALFLKGCTQLEDEALKYIGAHCPELVT 225
Query: 431 LDMSNCSCVSDESLREIALSCANLRILNSSYCPNIS---LESV--RLPMLTVLQLHSCEG 485
L++ C ++DE L I C L+ L +S C NI+ L ++ P L +L++ C
Sbjct: 226 LNLQTCLQITDEGLITICRGCHKLQSLCASGCSNITDAILNALGQNCPRLRILEVARCSQ 285
Query: 486 ITSASMAAISHS-YMLEVLELDNC-----NLLTSVSLELPRLQNIRLVHCRKFADLNLRA 539
+T ++ + + LE ++L+ C + L +S+ PRLQ + L HC D +R
Sbjct: 286 LTDVGFTTLARNCHELEKMDLEECVQITDSTLIQLSIHCPRLQVLSLSHCELITDDGIRH 345
Query: 540 M--------MLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTD 591
+ L I + NC IT SL+ L C L+ ++L D
Sbjct: 346 LGNGACAHDQLEVIELDNCPL-----ITDASLEHLK------------SCHSLERIELYD 388
Query: 592 CESLTNS 598
C+ +T +
Sbjct: 389 CQQITRA 395
|
Substrate-recognition component of the SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin ligase complex. Role in neural transmission. Homo sapiens (taxid: 9606) |
| >sp|Q58DG6|FXL20_BOVIN F-box/LRR-repeat protein 20 OS=Bos taurus GN=FBXL20 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 97.8 bits (242), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 109/427 (25%), Positives = 183/427 (42%), Gaps = 74/427 (17%)
Query: 211 DDNGTPKT--------EDLEIRMDLTDDLLHMVFSFLDYVDLCRAAIVCRQWRAASAHED 262
D NG K+ ++ I L +LL +FSFLD V LCR A V R W +
Sbjct: 4 DVNGVTKSRFEMFSNSDEAVINKKLPKELLLRIFSFLDVVTLCRCAQVSRAWNVLALDGS 63
Query: 263 FWRCLNFEN--RKISVEQFEDVCQRYPN-ATEVNIYGAPAIHLLVMKAVSL-LRNLEALT 318
W+ ++ + R I E++ +R ++++ G + ++ + RN+E L
Sbjct: 64 NWQRIDLFDFQRDIEGRVVENISKRCGGFLRKLSLRGCLGVGDNALRTFAQNCRNIEVLN 123
Query: 319 L-GRGQLGDAFFHALAD-CSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVS 376
L G + DA +L+ CS L+ L++ T IT + +S
Sbjct: 124 LNGCTKTTDATCTSLSKFCSKLRHLDLASCT------------------SITNMSLKALS 165
Query: 377 IRCPQLEHLSLK------RSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLES 430
CP LE L++ + + V C L L + C +L D A++ CP+L +
Sbjct: 166 EGCPLLEQLNISWCDQVTKDGIQALVRGCGGLKALFLKGCTQLEDEALKYIGAHCPELVT 225
Query: 431 LDMSNCSCVSDESLREIALSCANLRILNSSYCPNIS---LESV--RLPMLTVLQLHSCEG 485
L++ C ++DE L I C L+ L +S C NI+ L ++ P L +L++ C
Sbjct: 226 LNLQTCLQITDEGLITICRGCHKLQSLCASGCSNITDAILNALGQNCPRLRILEVARCSQ 285
Query: 486 ITSASMAAISHS-YMLEVLELDNC-----NLLTSVSLELPRLQNIRLVHCRKFADLNLRA 539
+T ++ + + LE ++L+ C + L +S+ PRLQ + L HC D +R
Sbjct: 286 LTDVGFTTLARNCHELEKMDLEECVQITDSTLIQLSIHCPRLQVLSLSHCELITDDGIRH 345
Query: 540 M--------MLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTD 591
+ L I + NC IT SL+ L C L+ ++L D
Sbjct: 346 LGNGACAHDQLEVIELDNCPL-----ITDASLEHLK------------SCHSLERIELYD 388
Query: 592 CESLTNS 598
C+ +T +
Sbjct: 389 CQQITRA 395
|
Substrate-recognition component of the SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin ligase complex. Role in neural transmission. Bos taurus (taxid: 9913) |
| >sp|Q9UKC9|FBXL2_HUMAN F-box/LRR-repeat protein 2 OS=Homo sapiens GN=FBXL2 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 91.3 bits (225), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 105/403 (26%), Positives = 185/403 (45%), Gaps = 58/403 (14%)
Query: 223 IRMDLTDDLLHMVFSFLDYVDLCRAAIVCRQWRAASAHEDFWRCLNFENRKISVEQ--FE 280
I L +LL +FSFLD V LCR A + + W + W+ ++ N + VE E
Sbjct: 11 INKKLPKELLLRIFSFLDIVTLCRCAQISKAWNILALDGSNWQRIDLFNFQTDVEGRVVE 70
Query: 281 DVCQRYPN-ATEVNIYGAPAIHLLVMKAVSL-LRNLEALTL-GRGQLGDAFFHALAD-CS 336
++ +R ++++ G + +K + RN+E L L G ++ D+ ++L+ CS
Sbjct: 71 NISKRCGGFLRKLSLRGCIGVGDSSLKTFAQNCRNIEHLNLNGCTKITDSTCYSLSRFCS 130
Query: 337 MLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIRCPQLEHLSLK------RS 390
LK L++ + IT + +S C LE+L+L +
Sbjct: 131 KLKHLDLTSC------------------VSITNSSLKGISEGCRNLEYLNLSWCDQITKD 172
Query: 391 NMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALS 450
+ V C L L + C +L D A++ C +L SL++ +CS ++DE + +I
Sbjct: 173 GIEALVRGCRGLKALLLRGCTQLEDEALKHIQNYCHELVSLNLQSCSRITDEGVVQICRG 232
Query: 451 CANLRILNSSYCPNI---SLESVRL--PMLTVLQLHSCEGITSASMAAISHS-YMLEVLE 504
C L+ L S C N+ SL ++ L P L +L+ C +T A ++ + + LE ++
Sbjct: 233 CHRLQALCLSGCSNLTDASLTALGLNCPRLQILEAARCSHLTDAGFTLLARNCHELEKMD 292
Query: 505 LDNCNLLT-----SVSLELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAALHRINIT 559
L+ C L+T +S+ P+LQ + L HC D + + +SN H
Sbjct: 293 LEECILITDSTLIQLSIHCPKLQALSLSHCELITDDGI-------LHLSNSTCGH----- 340
Query: 560 SNSLQKLSLQKQENLTSLALQ----CQCLQEVDLTDCESLTNS 598
L+ L L +T +AL+ C+ L+ ++L DC+ +T +
Sbjct: 341 -ERLRVLELDNCLLITDVALEHLENCRGLERLELYDCQQVTRA 382
|
Probably recognizes and binds to some phosphorylated proteins and promotes their ubiquitination and degradation. Binds to hepatitis C virus non-structural protein 5A (NS5A) in a reaction crucial for hepatitis C virus RNA replication. Homo sapiens (taxid: 9606) |
| >sp|Q5R3Z8|FBXL2_PONAB F-box/LRR-repeat protein 2 OS=Pongo abelii GN=FBXL2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 91.3 bits (225), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 105/404 (25%), Positives = 185/404 (45%), Gaps = 58/404 (14%)
Query: 222 EIRMDLTDDLLHMVFSFLDYVDLCRAAIVCRQWRAASAHEDFWRCLNFENRKISVEQ--F 279
I L +LL +FSFLD V LCR A + + W + W+ ++ N + VE
Sbjct: 10 RINKKLPKELLLRIFSFLDIVTLCRCAQISKAWNILALDGSNWQRIDLFNFQTDVEGRVV 69
Query: 280 EDVCQRYPN-ATEVNIYGAPAIHLLVMKAVSL-LRNLEALTL-GRGQLGDAFFHALAD-C 335
E++ +R ++++ G + +K + RN+E L L G ++ D+ ++L+ C
Sbjct: 70 ENISKRCGGFLRKLSLRGCIGVGDSSLKTFAQNCRNIEHLNLNGCTKITDSTCYSLSRFC 129
Query: 336 SMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIRCPQLEHLSLK------R 389
S LK L++ + IT + +S C LE+L+L +
Sbjct: 130 SKLKHLDLTSC------------------VSITNSSLKGISEGCRNLEYLNLSWCDQITK 171
Query: 390 SNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIAL 449
+ V C L L + C +L D A++ C +L SL++ +CS ++DE + +I
Sbjct: 172 DGIEALVRGCRGLKALLLRGCTQLEDEALKHIQNYCHELVSLNLQSCSRITDEGVVQICR 231
Query: 450 SCANLRILNSSYCPNI---SLESVRL--PMLTVLQLHSCEGITSASMAAISHS-YMLEVL 503
C L+ L S C N+ SL ++ L P L +L+ C +T A ++ + + LE +
Sbjct: 232 GCHRLQALCLSGCSNLTDASLTALGLNCPRLQILEAARCSHLTDAGFTLLARNCHELEKM 291
Query: 504 ELDNCNLLT-----SVSLELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAALHRINI 558
+L+ C L+T +S+ P+LQ + L HC D + + +SN H
Sbjct: 292 DLEECILITDSTLIQLSIHCPKLQALSLSHCELITDDGI-------LHLSNSTCGH---- 340
Query: 559 TSNSLQKLSLQKQENLTSLALQ----CQCLQEVDLTDCESLTNS 598
L+ L L +T +AL+ C+ L+ ++L DC+ +T +
Sbjct: 341 --ERLRVLELDNCLLITDVALEHLENCRGLERLELYDCQQVTRA 382
|
Probably recognizes and binds to some phosphorylated proteins and promotes their ubiquitination and degradation. Pongo abelii (taxid: 9601) |
| >sp|Q8BH16|FBXL2_MOUSE F-box/LRR-repeat protein 2 OS=Mus musculus GN=Fbxl2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 89.0 bits (219), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 105/407 (25%), Positives = 186/407 (45%), Gaps = 56/407 (13%)
Query: 218 TEDLEIRMDLTDDLLHMVFSFLDYVDLCRAAIVCRQWRAASAHEDFWRCLNFENRKISVE 277
++D I L +LL +FSFLD V LCR A + + W + W+ ++ N + VE
Sbjct: 6 SDDGLINKKLPKELLLRIFSFLDIVTLCRCAQISKAWNILALDGSNWQRVDLFNFQTDVE 65
Query: 278 Q--FEDVCQRYPN-ATEVNIYGAPAIHLLVMKAVSL-LRNLEALTL-GRGQLGDAFFHAL 332
E++ +R ++++ G + +K + RN+E L L G ++ D+ ++L
Sbjct: 66 GRVVENISKRCGGFLRKLSLRGCIGVGDSSLKTFAQNCRNIEHLNLNGCTKITDSTCYSL 125
Query: 333 AD-CSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIRCPQLEHLSLK--- 388
+ CS LK L++ + +T + +S C LE+L+L
Sbjct: 126 SRFCSKLKHLDLTSC------------------VSVTNSSLKGISEGCRNLEYLNLSWCD 167
Query: 389 ---RSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLR 445
+ + V C L L + C +L D A++ C +L SL++ +CS ++D+ +
Sbjct: 168 QITKEGIEALVRGCRGLKALLLRGCTQLEDEALKHIQNHCHELVSLNLQSCSRITDDGVV 227
Query: 446 EIALSCANLRILNSSYCPNI---SLESVRL--PMLTVLQLHSCEGITSASMAAISHS-YM 499
+I C L+ L S C N+ SL ++ L P L VL+ C +T A ++ + +
Sbjct: 228 QICRGCHRLQALCLSGCSNLTDASLTALGLNCPRLQVLEAARCSHLTDAGFTLLARNCHE 287
Query: 500 LEVLELDNCNLLT-----SVSLELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAALH 554
LE ++L+ C L+T +S+ P+LQ + L HC D + + S+ L
Sbjct: 288 LEKMDLEECVLITDSTLVQLSIHCPKLQALSLSHCELITDEGILHLSSSTCGHERLRVLE 347
Query: 555 RIN---ITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNS 598
N +T SL+ L EN C+ L+ ++L DC+ +T +
Sbjct: 348 LDNCLLVTDASLEHL-----EN-------CRGLERLELYDCQQVTRA 382
|
Probably recognizes and binds to some phosphorylated proteins and promotes their ubiquitination and degradation. Mus musculus (taxid: 10090) |
| >sp|A6H779|FBXL2_BOVIN F-box/LRR-repeat protein 2 OS=Bos taurus GN=FBXL2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 89.0 bits (219), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 101/371 (27%), Positives = 162/371 (43%), Gaps = 64/371 (17%)
Query: 223 IRMDLTDDLLHMVFSFLDYVDLCRAAIVCRQWRAASAHEDFWRCLNFENRKISVEQ--FE 280
I L +LL +FSFLD V LCR A + + W + W+ ++ N + VE E
Sbjct: 11 INKKLPKELLLRIFSFLDIVTLCRCAQISKAWNILALDGSNWQRIDLFNFQTDVEGRVVE 70
Query: 281 DVCQRYPN-ATEVNIYGAPAIHLLVMKAVSL-LRNLEALTL-GRGQLGDAFFHALAD-CS 336
++ +R ++++ G + +K + RN+E L L G ++ D+ ++L+ CS
Sbjct: 71 NISKRCGGFLRKLSLRGCIGVGDSSLKTFAQNCRNIEHLNLNGCTKITDSTCYSLSRFCS 130
Query: 337 MLKSLNVNDAT---------LGNGVQEIP---------INHDQLRRLEITKCRVMRVSIR 378
LK L++ + G + + I D + L + CR +R +
Sbjct: 131 KLKHLDLTSCVSITNSSLKGISEGCRHLEYLNLSWCDQITKDGVEAL-VRGCRGLRALLL 189
Query: 379 --CPQLEHLSLKR---------------------SNMAQAVLNCPLLHLLDIASCHKLSD 415
C QLE +LK + Q CP L L ++ C L+D
Sbjct: 190 RGCTQLEDEALKHIQNYCHELVSLNLQSCSRVTDDGVVQLCRGCPRLQALCLSGCGSLTD 249
Query: 416 AAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNISLE-----SV 470
A++ A +CP+L+ L+ + CS ++D +A +C +L ++ C I+ S+
Sbjct: 250 ASLTALALNCPRLQILEAARCSHLTDAGFTLLARNCHDLEKMDLEECILITDRTLTQLSI 309
Query: 471 RLPMLTVLQLHSCEGITSASMAAISHS----YMLEVLELDNCNLLTSVSLELPRLQNIRL 526
P L L L CE IT + +S+S L VLELDNC L+T V+LE L
Sbjct: 310 HCPKLQALSLSHCELITDDGILHLSNSPCGHERLRVLELDNCLLITDVALE-------HL 362
Query: 527 VHCRKFADLNL 537
HCR L L
Sbjct: 363 EHCRGLERLEL 373
|
Probably recognizes and binds to some phosphorylated proteins and promotes their ubiquitination and degradation. Bos taurus (taxid: 9913) |
| >sp|Q9UJT9|FBXL7_HUMAN F-box/LRR-repeat protein 7 OS=Homo sapiens GN=FBXL7 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 86.7 bits (213), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 105/418 (25%), Positives = 169/418 (40%), Gaps = 99/418 (23%)
Query: 216 PKTEDLEIRMDLTDDLLHMVFSFLDYVDLCRAAIVCRQWRAASAHEDFWRCLNFENRKIS 275
P+ E I L D + +FSFL LCR A VCR+W + WR + I+
Sbjct: 107 PQKEQASIDR-LPDHSMVQIFSFLPTNQLCRCARVCRRWYNLAWDPRLWRTIRLTGETIN 165
Query: 276 VEQFEDV-----CQRYPNA----TEVNIYGAPAIH----LLVMKAVSLLRNLEALTLGRG 322
V++ V CQ PN V + G + + + LR LE ++
Sbjct: 166 VDRALKVLTRRLCQDTPNVCLMLETVTVSGCRRLTDRGLYTIAQCCPELRRLE-VSGCYN 224
Query: 323 QLGDAFFHALADCSMLKSLNVNDA--------TLGNGVQEIPINHDQ--LRRLEITKCRV 372
+A F ++ C L+ L+V+ T ++ P++ Q +R L++T C V
Sbjct: 225 ISNEAVFDVVSLCPNLEHLDVSGCSKVTCISLTREASIKLSPLHGKQISIRYLDMTDCFV 284
Query: 373 MR------VSIRCPQLEHLSLKRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCP 426
+ ++ C QL HL L+R C +L+D +R C
Sbjct: 285 LEDEGLHTIAAHCTQLTHLYLRR--------------------CVRLTDEGLRYLVIYCA 324
Query: 427 QLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNISLESVRL-----PMLTVLQLH 481
++ L +S+C VSD LREIA + LR L+ ++C ++ +R L L
Sbjct: 325 SIKELSVSDCRFVSDFGLREIAKLESRLRYLSIAHCGRVTDVGIRYVAKYCSKLRYLNAR 384
Query: 482 SCEGITSASMAAISHS-YMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAM 540
CEGIT + ++ + L+ L++ C L++ LE
Sbjct: 385 GCEGITDHGVEYLAKNCTKLKSLDIGKCPLVSDTGLE----------------------- 421
Query: 541 MLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQ-----CQCLQEVDLTDCE 593
C AL+ N L++LSL+ E++T LQ C LQ +++ DCE
Sbjct: 422 ---------CLALNCFN-----LKRLSLKSCESITGQGLQIVAANCFDLQTLNVQDCE 465
|
Substrate recognition component of a (SKP1-CUL1-F-box protein) E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of AURKA during mitosis, causing mitotic arrest. Homo sapiens (taxid: 9606) |
| >sp|Q5BJ29|FBXL7_MOUSE F-box/LRR-repeat protein 7 OS=Mus musculus GN=Fbxl7 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 85.1 bits (209), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 98/383 (25%), Positives = 159/383 (41%), Gaps = 68/383 (17%)
Query: 216 PKTEDLEIRMDLTDDLLHMVFSFLDYVDLCRAAIVCRQWRAASAHEDFWRCLNFENRKIS 275
P+ E I L D + +FSFL LCR A VCR+W + WR + I+
Sbjct: 107 PQKEQASIDR-LPDHSMVQIFSFLPTNQLCRCARVCRRWYNLAWDPRLWRTIRLTGETIN 165
Query: 276 VEQFEDV-----CQRYPNA----TEVNIYGAPAIH----LLVMKAVSLLRNLEALTLGRG 322
V++ V CQ PN V + G + + + LR LE ++
Sbjct: 166 VDRALKVLTRRLCQDTPNVCLMLETVIVSGCRRLTDRGLYTIAQCCPELRRLE-VSGCYN 224
Query: 323 QLGDAFFHALADCSMLKSLNVN--------DATLGNGVQEIPINHDQ--LRRLEITKCRV 372
+A F ++ C L+ L+V+ T ++ P++ Q +R L++T C V
Sbjct: 225 ISNEAVFDVVSLCPNLEHLDVSGCSKVTCISLTREASIKLSPLHGKQISIRYLDMTDCFV 284
Query: 373 MR------VSIRCPQLEHLSLKRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCP 426
+ ++ C QL HL L+R C +L+D +R C
Sbjct: 285 LEDEGLHTIAAHCTQLTHLYLRR--------------------CVRLTDEGLRYLVIYCT 324
Query: 427 QLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNISLESVRL-----PMLTVLQLH 481
++ L +S+C VSD LREIA + LR L+ ++C I+ +R L L
Sbjct: 325 SIKELSVSDCRFVSDFGLREIAKLESRLRYLSIAHCGRITDVGIRYVAKYCSKLRYLNAR 384
Query: 482 SCEGITSASMAAISHS-YMLEVLELDNCNL-----LTSVSLELPRLQNIRLVHCRKFADL 535
CEGIT + ++ + L+ L++ C L L S++L L+ + L C
Sbjct: 385 GCEGITDHGVEYLAKNCTKLKSLDIGKCPLVSDTGLESLALNCFNLKRLSLKSCESITGQ 444
Query: 536 NLRAMMLSSIMVSNCAALHRINI 558
L+ I+ +NC L +N+
Sbjct: 445 GLQ------IVAANCFDLQMLNV 461
|
Substrate recognition component of a (SKP1-CUL1-F-box protein) E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of AURKA during mitosis, causing mitotic arrest. Mus musculus (taxid: 10090) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 733 | ||||||
| 224092083 | 895 | f-box family protein [Populus trichocarp | 0.829 | 0.679 | 0.786 | 0.0 | |
| 255550167 | 997 | conserved hypothetical protein [Ricinus | 0.840 | 0.617 | 0.776 | 0.0 | |
| 224141687 | 957 | predicted protein [Populus trichocarpa] | 0.845 | 0.647 | 0.757 | 0.0 | |
| 359475974 | 922 | PREDICTED: F-box/LRR-repeat protein 15-l | 0.800 | 0.636 | 0.768 | 0.0 | |
| 296081717 | 957 | unnamed protein product [Vitis vinifera] | 0.800 | 0.613 | 0.768 | 0.0 | |
| 343887327 | 1068 | F-box / LRR-repeat protein [Citrus unshi | 0.942 | 0.647 | 0.676 | 0.0 | |
| 356552386 | 975 | PREDICTED: F-box/LRR-repeat protein 15-l | 0.799 | 0.601 | 0.738 | 0.0 | |
| 356564031 | 982 | PREDICTED: F-box/LRR-repeat protein 15-l | 0.824 | 0.615 | 0.710 | 0.0 | |
| 356514729 | 893 | PREDICTED: F-box/LRR-repeat protein 15-l | 0.802 | 0.658 | 0.697 | 0.0 | |
| 297798620 | 990 | predicted protein [Arabidopsis lyrata su | 0.832 | 0.616 | 0.683 | 0.0 |
| >gi|224092083|ref|XP_002309467.1| f-box family protein [Populus trichocarpa] gi|222855443|gb|EEE92990.1| f-box family protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 965 bits (2495), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 483/614 (78%), Positives = 535/614 (87%), Gaps = 6/614 (0%)
Query: 118 GESSGGSCSAGSKALAV-----EDSQHKRAKVYSASTG-HYVTTGSSDAGASSSLAGGDY 171
GE+SG S + A + DS +KRAKVYS S HY +SDAG S+S A
Sbjct: 52 GENSGSSSAVAEAAGSGNGGCDRDSHNKRAKVYSYSNDCHYAAVMASDAGNSTSSADRHL 111
Query: 172 NVSQGSSVPGTGEIFCNYFTWNSGGDGNPFDASGGNDGGDDNGTPKTEDLEIRMDLTDDL 231
+SQ SS+P EIF + F WN+ D NPFD++G D GDD+GT K+EDLE+RMDLTDDL
Sbjct: 112 GLSQSSSIPSNNEIFYHNFMWNNNSDDNPFDSNGARDDGDDSGTSKSEDLEVRMDLTDDL 171
Query: 232 LHMVFSFLDYVDLCRAAIVCRQWRAASAHEDFWRCLNFENRKISVEQFEDVCQRYPNATE 291
LHMVFSFLD ++LCRAA+VCRQWRAASAHEDFWRCLNFENR ISVEQFED+ +RYPNATE
Sbjct: 172 LHMVFSFLDPINLCRAAMVCRQWRAASAHEDFWRCLNFENRNISVEQFEDMSRRYPNATE 231
Query: 292 VNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNG 351
VNIYGAPAIHLLVMKA+ LRNLE LT+G+GQLGD FF AL DC MLKSLNVNDATLG+G
Sbjct: 232 VNIYGAPAIHLLVMKALFSLRNLETLTVGKGQLGDPFFGALGDCIMLKSLNVNDATLGSG 291
Query: 352 VQEIPINHDQLRRLEITKCRVMRVSIRCPQLEHLSLKRSNMAQAVLNCPLLHLLDIASCH 411
+QEIPINHD+L L++TKCRVMR+S+RCPQLE LSLKRSNMAQAVLNCPLL LLDI SCH
Sbjct: 292 IQEIPINHDRLCHLQLTKCRVMRISVRCPQLETLSLKRSNMAQAVLNCPLLRLLDIGSCH 351
Query: 412 KLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNISLESVR 471
KL+DAAIR AA SCPQLESLDMSNCSCVSDE+LREIAL+CANL ILN+SYCPNISLESVR
Sbjct: 352 KLTDAAIRSAAISCPQLESLDMSNCSCVSDETLREIALTCANLHILNASYCPNISLESVR 411
Query: 472 LPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRK 531
+PMLTVL+LHSCEGITSASM+AI++SYMLEVLELDNC+LLTSVSL+LPRLQNIRLVHCRK
Sbjct: 412 MPMLTVLKLHSCEGITSASMSAIAYSYMLEVLELDNCSLLTSVSLDLPRLQNIRLVHCRK 471
Query: 532 FADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTD 591
FADLNL+++MLSSIM+SNC ALHRINITSNSLQKL+LQKQENLT+LALQCQ LQEVDLTD
Sbjct: 472 FADLNLQSIMLSSIMLSNCPALHRINITSNSLQKLALQKQENLTTLALQCQYLQEVDLTD 531
Query: 592 CESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRFCSTSLVSLSLVGCRAITALELKC 651
CESLTNS+CEVFSDGGGCPMLKSLVLDNCE LT VRF STSLVSLSLVGCRAITAL+L C
Sbjct: 532 CESLTNSICEVFSDGGGCPMLKSLVLDNCEALTAVRFHSTSLVSLSLVGCRAITALDLAC 591
Query: 652 PILEKVCLDGCDHIESASFVPVALQSLNLGICPKLSTLGIEALHMVVLELKGCGVLSDAY 711
P LE VCLDGCDH+E ASF PVAL+SLNLGICPKL L IEA MV LELKGCGVLS+A
Sbjct: 592 PSLELVCLDGCDHLEEASFCPVALRSLNLGICPKLKILSIEAPCMVSLELKGCGVLSEAS 651
Query: 712 INCPLLTSLDASFC 725
INCPLLTSLDASFC
Sbjct: 652 INCPLLTSLDASFC 665
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255550167|ref|XP_002516134.1| conserved hypothetical protein [Ricinus communis] gi|223544620|gb|EEF46136.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 953 bits (2464), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 489/630 (77%), Positives = 540/630 (85%), Gaps = 14/630 (2%)
Query: 110 IRGTRRFDGESS-------------GGSCSAGSKALAVEDSQHKRAKVYSASTG-HYVTT 155
IRG+ + GESS G + D +KRAKVYSAS HY+T
Sbjct: 69 IRGSWQVQGESSISNSSSCSVAVSAGAVVTGSGNETCDRDMHNKRAKVYSASRACHYMTA 128
Query: 156 GSSDAGASSSLAGGDYNVSQGSSVPGTGEIFCNYFTWNSGGDGNPFDASGGNDGGDDNGT 215
SSDAG SS + D+N++Q SSVP EIF + F WN+ + NP D+ GG D GD++GT
Sbjct: 129 MSSDAGNPSSSSDRDFNLNQSSSVPARNEIFYHNFMWNNSSEENPCDSGGGRDDGDESGT 188
Query: 216 PKTEDLEIRMDLTDDLLHMVFSFLDYVDLCRAAIVCRQWRAASAHEDFWRCLNFENRKIS 275
K+EDLE+RMDLTDDLLHMVFSFLD+++LCRAA+VCRQWRAASAHEDFWRCLNFENR IS
Sbjct: 189 SKSEDLEVRMDLTDDLLHMVFSFLDHLNLCRAAMVCRQWRAASAHEDFWRCLNFENRNIS 248
Query: 276 VEQFEDVCQRYPNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADC 335
+EQF+D+C+RYPNATEVNIY AP IHLLVMKA+S LRNLE LTLGRGQLGD FFHALADC
Sbjct: 249 IEQFDDMCRRYPNATEVNIYSAPNIHLLVMKALSSLRNLEVLTLGRGQLGDPFFHALADC 308
Query: 336 SMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIRCPQLEHLSLKRSNMAQA 395
SMLKSL VNDATLGNGV EIPINHD+LR L++ KCRV+R+S+RCPQLE LSLKRSNMAQA
Sbjct: 309 SMLKSLYVNDATLGNGVHEIPINHDRLRHLQLIKCRVVRISVRCPQLETLSLKRSNMAQA 368
Query: 396 VLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLR 455
VLNCPLL LLDI SCHKLSDAAIR AA SCPQLESLDMSNCSCVSDE+LREIA +C NL
Sbjct: 369 VLNCPLLRLLDIGSCHKLSDAAIRSAAISCPQLESLDMSNCSCVSDETLREIAATCVNLH 428
Query: 456 ILNSSYCPNISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVS 515
ILN+SYCPNISLESVRLPMLTVL+LHSCEGITSASMAAI+HS MLEVLELDNC+LLTSVS
Sbjct: 429 ILNASYCPNISLESVRLPMLTVLKLHSCEGITSASMAAIAHSSMLEVLELDNCSLLTSVS 488
Query: 516 LELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLT 575
L+LP LQNIRLVHCRKFADLNLR+ LSSIMVSNC ALHRINI SNSLQKL+LQKQENLT
Sbjct: 489 LDLPSLQNIRLVHCRKFADLNLRSTKLSSIMVSNCPALHRINIMSNSLQKLALQKQENLT 548
Query: 576 SLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRFCSTSLVS 635
+LALQCQ LQEVDLTDCESLTNS+CEVFSDGGGCPMLKSLVLDNCE LT V+FCSTSLVS
Sbjct: 549 ALALQCQFLQEVDLTDCESLTNSICEVFSDGGGCPMLKSLVLDNCESLTAVQFCSTSLVS 608
Query: 636 LSLVGCRAITALELKCPILEKVCLDGCDHIESASFVPVALQSLNLGICPKLSTLGIEALH 695
LSLVGCRAITALEL CP LEKVCLDGCDH+E ASF PVAL+SLNLGICPKL+ L IEA +
Sbjct: 609 LSLVGCRAITALELTCPCLEKVCLDGCDHLERASFSPVALRSLNLGICPKLNILNIEAPY 668
Query: 696 MVVLELKGCGVLSDAYINCPLLTSLDASFC 725
M++LELKGCGVLS+A INCPLLTSLDASFC
Sbjct: 669 MLLLELKGCGVLSEASINCPLLTSLDASFC 698
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224141687|ref|XP_002324196.1| predicted protein [Populus trichocarpa] gi|222865630|gb|EEF02761.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 940 bits (2429), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 474/626 (75%), Positives = 531/626 (84%), Gaps = 6/626 (0%)
Query: 106 RGPVIRGTRRFDGESSGGSCSAGS-----KALAVEDSQHKRAKVYSAST-GHYVTTGSSD 159
R R + GESSG S + K D+ +KRAKVYS S HY SSD
Sbjct: 36 RSSAFRASWLARGESSGSSSAVAEAEGSGKEKCDRDAHNKRAKVYSCSNDSHYAAVMSSD 95
Query: 160 AGASSSLAGGDYNVSQGSSVPGTGEIFCNYFTWNSGGDGNPFDASGGNDGGDDNGTPKTE 219
G S+S A D ++Q SS+ EI + F WN+ D NPFD+SGG DGGDD+ +E
Sbjct: 96 VGDSTSSADRDLGLTQSSSISSNNEICYHNFMWNNNSDENPFDSSGGRDGGDDSVISNSE 155
Query: 220 DLEIRMDLTDDLLHMVFSFLDYVDLCRAAIVCRQWRAASAHEDFWRCLNFENRKISVEQF 279
DL++RMDLTDDLLHMVFSFLD+++LCRAA+VCRQW+AASAHEDFWRCL+FENR ISVEQF
Sbjct: 156 DLDVRMDLTDDLLHMVFSFLDHINLCRAAMVCRQWQAASAHEDFWRCLDFENRNISVEQF 215
Query: 280 EDVCQRYPNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLK 339
ED+ +RYPNATEVNIYGAP+I LLVMKAVS LRNLE+LTLG+GQLGD FFHAL DCSMLK
Sbjct: 216 EDMSRRYPNATEVNIYGAPSIQLLVMKAVSSLRNLESLTLGKGQLGDPFFHALGDCSMLK 275
Query: 340 SLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIRCPQLEHLSLKRSNMAQAVLNC 399
+LNVNDATLGNG+QEIPINHD+L L++TKCRVMR+S+RCPQLE LSLKRSNMAQAVLNC
Sbjct: 276 NLNVNDATLGNGIQEIPINHDRLCHLQLTKCRVMRISVRCPQLETLSLKRSNMAQAVLNC 335
Query: 400 PLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNS 459
PLL LLDI SCHKL+DAAIR AA SCPQL SLDMSNCSCVSDE+LREI+ +CANL LN+
Sbjct: 336 PLLRLLDIGSCHKLTDAAIRSAAISCPQLASLDMSNCSCVSDETLREISHTCANLHTLNA 395
Query: 460 SYCPNISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELP 519
SYCPNISLESVRLPMLT+L+LHSCEGITSASM+AI+HS +LEVLELDNC+LLTSVSL+LP
Sbjct: 396 SYCPNISLESVRLPMLTILKLHSCEGITSASMSAIAHSSLLEVLELDNCSLLTSVSLDLP 455
Query: 520 RLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLAL 579
RLQNIRLVHCRKFADLNLR++MLSSIMVSNC ALHRINITSNSLQKL+LQKQENL +LAL
Sbjct: 456 RLQNIRLVHCRKFADLNLRSIMLSSIMVSNCPALHRINITSNSLQKLALQKQENLATLAL 515
Query: 580 QCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRFCSTSLVSLSLV 639
QCQ LQE+DLTDCESLTNS+C+VFSDGGGCP LKSLVLDNCE LT VRF STSLVSLSLV
Sbjct: 516 QCQSLQEMDLTDCESLTNSICDVFSDGGGCPKLKSLVLDNCESLTAVRFRSTSLVSLSLV 575
Query: 640 GCRAITALELKCPILEKVCLDGCDHIESASFVPVALQSLNLGICPKLSTLGIEALHMVVL 699
GC AITAL+L CP LE VCLDGCDH+E ASF PVAL+ LNLGICPKL+ L IEA MV L
Sbjct: 576 GCHAITALDLACPSLELVCLDGCDHLEKASFCPVALRLLNLGICPKLNMLSIEAPFMVSL 635
Query: 700 ELKGCGVLSDAYINCPLLTSLDASFC 725
ELKGCGVLS+A INCPLLTSLDASFC
Sbjct: 636 ELKGCGVLSEATINCPLLTSLDASFC 661
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359475974|ref|XP_002279983.2| PREDICTED: F-box/LRR-repeat protein 15-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 891 bits (2303), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 454/591 (76%), Positives = 502/591 (84%), Gaps = 4/591 (0%)
Query: 138 QHKRAKVYSASTG--HYVTTGSSDAGASSSLAGGDYNVSQGSSVPGTGEIFCNYFTWNSG 195
HKRAKV+S S G + +T +AG SSS DYNVSQ S +P EI N
Sbjct: 106 HHKRAKVHSYSQGCTYAITAMPLEAGNSSSSTDRDYNVSQ-SPIPFNNEILRLTSMSNDS 164
Query: 196 GDGNPFDASGGNDG-GDDNGTPKTEDLEIRMDLTDDLLHMVFSFLDYVDLCRAAIVCRQW 254
D NP D++ G D GD T K EDLE+RMDLTDDLLHMVFSFLD+++LCRAAIVC+QW
Sbjct: 165 DDENPLDSNDGRDEEGDGFSTSKMEDLEVRMDLTDDLLHMVFSFLDHINLCRAAIVCKQW 224
Query: 255 RAASAHEDFWRCLNFENRKISVEQFEDVCQRYPNATEVNIYGAPAIHLLVMKAVSLLRNL 314
RA S+HEDFWRCLNFENR IS EQFED+C+RYPNATEVNI+GAP+IH LVM A+S LRNL
Sbjct: 225 RAGSSHEDFWRCLNFENRNISEEQFEDMCRRYPNATEVNIFGAPSIHSLVMTAMSSLRNL 284
Query: 315 EALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMR 374
E LTLG+G LGD FF ALADC MLK L VNDATLGNG+QEIPI HD+L L+ITKCRV+R
Sbjct: 285 ETLTLGKGTLGDTFFQALADCYMLKRLLVNDATLGNGIQEIPIYHDRLHHLQITKCRVLR 344
Query: 375 VSIRCPQLEHLSLKRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMS 434
+S+RCPQLE LSLKRS+MA AVLNCPLLH LDI SCHKL+DAAIR AATSCP LESLDMS
Sbjct: 345 ISVRCPQLETLSLKRSSMAHAVLNCPLLHDLDIGSCHKLTDAAIRSAATSCPLLESLDMS 404
Query: 435 NCSCVSDESLREIALSCANLRILNSSYCPNISLESVRLPMLTVLQLHSCEGITSASMAAI 494
NCSCVSD++LREIAL+CANL IL++SYCPNISLESVRL MLTVL+LHSCEGITSASMAAI
Sbjct: 405 NCSCVSDDTLREIALTCANLHILDASYCPNISLESVRLSMLTVLKLHSCEGITSASMAAI 464
Query: 495 SHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAALH 554
SHSYMLEVLELDNC+LLTSVSLELPRLQNIRLVHCRKF DLNLR++MLSS+ VSNC ALH
Sbjct: 465 SHSYMLEVLELDNCSLLTSVSLELPRLQNIRLVHCRKFVDLNLRSIMLSSMTVSNCPALH 524
Query: 555 RINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKS 614
RIN+TSNSLQKL LQKQ +LT+LALQCQ LQEVDLTDCESLTNS+C+VFSD GGCPMLKS
Sbjct: 525 RINVTSNSLQKLVLQKQASLTTLALQCQYLQEVDLTDCESLTNSICDVFSDDGGCPMLKS 584
Query: 615 LVLDNCEGLTVVRFCSTSLVSLSLVGCRAITALELKCPILEKVCLDGCDHIESASFVPVA 674
LVLDNCE LT V F STSLVSLSLVGCRAIT+LEL CP LE+V LDGCDH+E ASF PV
Sbjct: 585 LVLDNCECLTAVGFRSTSLVSLSLVGCRAITSLELVCPYLEQVHLDGCDHLERASFRPVG 644
Query: 675 LQSLNLGICPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFC 725
L+SLNLGICPKLS L IEA MV LELKGCG LS+A INCP+LTSLDASFC
Sbjct: 645 LRSLNLGICPKLSALHIEAPSMVQLELKGCGGLSEASINCPMLTSLDASFC 695
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296081717|emb|CBI20722.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 891 bits (2302), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 454/591 (76%), Positives = 502/591 (84%), Gaps = 4/591 (0%)
Query: 138 QHKRAKVYSASTG--HYVTTGSSDAGASSSLAGGDYNVSQGSSVPGTGEIFCNYFTWNSG 195
HKRAKV+S S G + +T +AG SSS DYNVSQ S +P EI N
Sbjct: 72 HHKRAKVHSYSQGCTYAITAMPLEAGNSSSSTDRDYNVSQ-SPIPFNNEILRLTSMSNDS 130
Query: 196 GDGNPFDASGGNDG-GDDNGTPKTEDLEIRMDLTDDLLHMVFSFLDYVDLCRAAIVCRQW 254
D NP D++ G D GD T K EDLE+RMDLTDDLLHMVFSFLD+++LCRAAIVC+QW
Sbjct: 131 DDENPLDSNDGRDEEGDGFSTSKMEDLEVRMDLTDDLLHMVFSFLDHINLCRAAIVCKQW 190
Query: 255 RAASAHEDFWRCLNFENRKISVEQFEDVCQRYPNATEVNIYGAPAIHLLVMKAVSLLRNL 314
RA S+HEDFWRCLNFENR IS EQFED+C+RYPNATEVNI+GAP+IH LVM A+S LRNL
Sbjct: 191 RAGSSHEDFWRCLNFENRNISEEQFEDMCRRYPNATEVNIFGAPSIHSLVMTAMSSLRNL 250
Query: 315 EALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMR 374
E LTLG+G LGD FF ALADC MLK L VNDATLGNG+QEIPI HD+L L+ITKCRV+R
Sbjct: 251 ETLTLGKGTLGDTFFQALADCYMLKRLLVNDATLGNGIQEIPIYHDRLHHLQITKCRVLR 310
Query: 375 VSIRCPQLEHLSLKRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMS 434
+S+RCPQLE LSLKRS+MA AVLNCPLLH LDI SCHKL+DAAIR AATSCP LESLDMS
Sbjct: 311 ISVRCPQLETLSLKRSSMAHAVLNCPLLHDLDIGSCHKLTDAAIRSAATSCPLLESLDMS 370
Query: 435 NCSCVSDESLREIALSCANLRILNSSYCPNISLESVRLPMLTVLQLHSCEGITSASMAAI 494
NCSCVSD++LREIAL+CANL IL++SYCPNISLESVRL MLTVL+LHSCEGITSASMAAI
Sbjct: 371 NCSCVSDDTLREIALTCANLHILDASYCPNISLESVRLSMLTVLKLHSCEGITSASMAAI 430
Query: 495 SHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAALH 554
SHSYMLEVLELDNC+LLTSVSLELPRLQNIRLVHCRKF DLNLR++MLSS+ VSNC ALH
Sbjct: 431 SHSYMLEVLELDNCSLLTSVSLELPRLQNIRLVHCRKFVDLNLRSIMLSSMTVSNCPALH 490
Query: 555 RINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKS 614
RIN+TSNSLQKL LQKQ +LT+LALQCQ LQEVDLTDCESLTNS+C+VFSD GGCPMLKS
Sbjct: 491 RINVTSNSLQKLVLQKQASLTTLALQCQYLQEVDLTDCESLTNSICDVFSDDGGCPMLKS 550
Query: 615 LVLDNCEGLTVVRFCSTSLVSLSLVGCRAITALELKCPILEKVCLDGCDHIESASFVPVA 674
LVLDNCE LT V F STSLVSLSLVGCRAIT+LEL CP LE+V LDGCDH+E ASF PV
Sbjct: 551 LVLDNCECLTAVGFRSTSLVSLSLVGCRAITSLELVCPYLEQVHLDGCDHLERASFRPVG 610
Query: 675 LQSLNLGICPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFC 725
L+SLNLGICPKLS L IEA MV LELKGCG LS+A INCP+LTSLDASFC
Sbjct: 611 LRSLNLGICPKLSALHIEAPSMVQLELKGCGGLSEASINCPMLTSLDASFC 661
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|343887327|dbj|BAK61873.1| F-box / LRR-repeat protein [Citrus unshiu] | Back alignment and taxonomy information |
|---|
Score = 873 bits (2255), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 525/776 (67%), Positives = 566/776 (72%), Gaps = 85/776 (10%)
Query: 28 MKEGISAIEHESEGNIGNVSGDVAMQLGRRNASTSNNTGILPFEIMPQAILDDVYSTMSG 87
MKEGISAIE ESEGNIGNVSGDVAMQLGRRNASTSNNTGILPFEIMPQAILDDVYSTMSG
Sbjct: 1 MKEGISAIEDESEGNIGNVSGDVAMQLGRRNASTSNNTGILPFEIMPQAILDDVYSTMSG 60
Query: 88 ENTNDDASVPSARRHASRRGPVIRGTRRFDGESSGGSCSAGSKALAVEDSQHKRAKVYSA 147
ENTN DASVPSARRHASRRGPVIRGTRRFDGESSGGSCSAGSKALAVEDSQHKRAKVYSA
Sbjct: 61 ENTNVDASVPSARRHASRRGPVIRGTRRFDGESSGGSCSAGSKALAVEDSQHKRAKVYSA 120
Query: 148 STGHYVTTGSSDAGASSSLAGGDYNVSQGSSVPGTGEIFCNYFTWNSGGDGNPFDASGGN 207
STGHYVTTGSSDAGASSSLAGGDYNVSQGSSVPGTGEIFCNYFTWNSGGDGNPFDASGGN
Sbjct: 121 STGHYVTTGSSDAGASSSLAGGDYNVSQGSSVPGTGEIFCNYFTWNSGGDGNPFDASGGN 180
Query: 208 DGGDDNGTPKTEDLEIRMDLTDDLLHMVFSFLDYVDLCRAAIVCRQWRAASAHEDFWRCL 267
DGGDDNGTPKTEDLEIRMDLTDDLLHMVFSFLDYVDLCRAAIVCRQWRAASAHEDFWRCL
Sbjct: 181 DGGDDNGTPKTEDLEIRMDLTDDLLHMVFSFLDYVDLCRAAIVCRQWRAASAHEDFWRCL 240
Query: 268 NFENRKISVEQFE----DVCQRYPNATEVNIYGAPAIHL-LVMKAVSLLRNLEALTLGRG 322
NFENRKISVEQ C + + + ++ + ++N +L
Sbjct: 241 NFENRKISVEQLTMHLAKCCGALLDLVHGGDVVVVDLSIGMIRRHFGFVKNYMWWSLKCS 300
Query: 323 QLGDAFFHA-LADCSMLKSLN------VNDATLGNGVQEIPINHDQLRRLEI-----TKC 370
L A F A + M+ SL + V+++ + + I
Sbjct: 301 ILELAIFRADMVIACMMGSLESSFDLLYTPKKMKGLVEDVCQRYPNATEVNIYGAPAIHL 360
Query: 371 RVMRVSIRCPQLEHLSLKRSNMAQAVL----NCPLLHLLDIASCH--------------- 411
VM+ LE L+L R + A +C +L L++
Sbjct: 361 LVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQL 420
Query: 412 ---KLSDAAIRLAATSCPQLES--------------------LDMSNCSCVSDESLREIA 448
+++ + + CPQLE LD+++C +SD ++R A
Sbjct: 421 RRLEITKCRVMRVSIRCPQLEHLSLKRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAA 480
Query: 449 LSCANLRILNSSYCPNISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNC 508
SC L L+ S C +S ES+R L+ L + S+ IS LEVLELDNC
Sbjct: 481 TSCPQLESLDMSNCSCVSDESLREIALSCANLRI---LNSSYCPNIS----LEVLELDNC 533
Query: 509 NLLTSVSLELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSL 568
NLLTSVSLELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSL
Sbjct: 534 NLLTSVSLELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSL 593
Query: 569 QKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCE------- 621
QKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCE
Sbjct: 594 QKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCECEEPCSY 653
Query: 622 ------------GLTVVRFCSTSLVSLSLVGCRAITALELKCPILEKVCLDGCDHIESAS 669
GLTVVRFCSTSLVSLSLVGCRAITALELKCPILEKVCLDGCDHIESAS
Sbjct: 654 DGKHCYIKNEKGGLTVVRFCSTSLVSLSLVGCRAITALELKCPILEKVCLDGCDHIESAS 713
Query: 670 FVPVALQSLNLGICPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFC 725
FVPVALQSLNLGICPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFC
Sbjct: 714 FVPVALQSLNLGICPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFC 769
|
Source: Citrus unshiu Species: Citrus unshiu Genus: Citrus Family: Rutaceae Order: Sapindales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356552386|ref|XP_003544549.1| PREDICTED: F-box/LRR-repeat protein 15-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 864 bits (2233), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 438/593 (73%), Positives = 501/593 (84%), Gaps = 7/593 (1%)
Query: 136 DSQHKRAKVYSASTGHYVTTGSSDAGASSSLAGGDYNVSQGSSVPGTGEIFCNYFTWNSG 195
DS HKRAK Y+ +T + GAS+ GDY+ +G+ P GE + F
Sbjct: 89 DSSHKRAKFYADFEERNFSTHAGKCGASNEY--GDYDHIKGTLRPN-GETCYDAFALMGA 145
Query: 196 GD--GNPFDASGGNDG-GDDNGTPKTEDLEIRMDLTDDLLHMVFSFLDYVDLCRAAIVCR 252
+ + FD+S +G GDD+ K ED+E+RMDLTDDLLHMVFSFLD+ +LC+AA +C+
Sbjct: 146 VEESSSGFDSSIVKEGEGDDSDISKVEDVEVRMDLTDDLLHMVFSFLDHPNLCKAARICK 205
Query: 253 QWRAASAHEDFWRCLNFENRKISVEQFEDVCQRYPNATEVNIYGAPAIHLLVMKAVSLLR 312
QWR ASAHEDFW+ LNFE+R ISVEQFED+C+RYPNAT V+I G+ AI+LLVMKA+ LR
Sbjct: 206 QWRGASAHEDFWKSLNFEDRNISVEQFEDMCRRYPNATAVSISGS-AIYLLVMKAICSLR 264
Query: 313 NLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRV 372
NLE LTLGRGQ+ D FFHALADCSML+ LN+ND+TLGNG+QEI INHD+L L++TKCRV
Sbjct: 265 NLEVLTLGRGQIADTFFHALADCSMLRRLNINDSTLGNGIQEITINHDRLCHLQLTKCRV 324
Query: 373 MRVSIRCPQLEHLSLKRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLD 432
MR+++RCPQLE +SLKRSNMAQ VLNCPLLH LDI SCHKL DAAIR AATSCPQL SLD
Sbjct: 325 MRIAVRCPQLETMSLKRSNMAQVVLNCPLLHELDIGSCHKLPDAAIRAAATSCPQLVSLD 384
Query: 433 MSNCSCVSDESLREIALSCANLRILNSSYCPNISLESVRLPMLTVLQLHSCEGITSASMA 492
MSNCSCVSDE+LREIALSCANL L++SYC NISLESVRLPMLTVL+LHSCEGITSASMA
Sbjct: 385 MSNCSCVSDETLREIALSCANLSFLDASYCSNISLESVRLPMLTVLKLHSCEGITSASMA 444
Query: 493 AISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAA 552
AI+HSYMLEVLELDNC+LLTSVSL+LPRLQ IRLVHCRKFADLNLR MMLSSI+VSNC A
Sbjct: 445 AIAHSYMLEVLELDNCSLLTSVSLDLPRLQTIRLVHCRKFADLNLRTMMLSSILVSNCPA 504
Query: 553 LHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPML 612
LHRINITSNSLQKL+LQKQ++LT+LALQCQ LQEVDL++CESLTNS+C+VFSDGGGCPML
Sbjct: 505 LHRINITSNSLQKLALQKQDSLTTLALQCQSLQEVDLSECESLTNSICDVFSDGGGCPML 564
Query: 613 KSLVLDNCEGLTVVRFCSTSLVSLSLVGCRAITALELKCPILEKVCLDGCDHIESASFVP 672
KSLVLDNCE L VRF ST+LVSLSL GCRAITALEL CP LEKV LDGCDH+E ASF P
Sbjct: 565 KSLVLDNCESLESVRFISTTLVSLSLGGCRAITALELTCPNLEKVILDGCDHLEKASFCP 624
Query: 673 VALQSLNLGICPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFC 725
V L+SLNLGICPKL+ L IEA+ MV LELKGCGVLS+A +NCPLLTSLDASFC
Sbjct: 625 VGLRSLNLGICPKLNILSIEAMFMVSLELKGCGVLSEASLNCPLLTSLDASFC 677
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356564031|ref|XP_003550260.1| PREDICTED: F-box/LRR-repeat protein 15-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 855 bits (2208), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 440/619 (71%), Positives = 504/619 (81%), Gaps = 15/619 (2%)
Query: 116 FDGESS---GGSCSAGSKALAVEDSQHKRAKVYSASTGHYVTTGSSDAGASSSLAGGDYN 172
+ GESS C + A D +KRAK Y+ H+ +TG S+S DYN
Sbjct: 72 WPGESSSTAAAECLDIAAAGESRDLSNKRAKFYADFEEHHFSTGK----CSASNEYVDYN 127
Query: 173 VSQGSSVPGTGEIFCNYFTW------NSGGDGNPFDASGGNDGGDDNGTPKTEDLEIRMD 226
S ++ GE + F+ NS G + GG +G D + + ED+E+RMD
Sbjct: 128 FSIKGTLRPNGETCYDAFSLMGVVEENSSGFDSRIVKEGG-EGDDSDISKVEEDVEVRMD 186
Query: 227 LTDDLLHMVFSFLDYVDLCRAAIVCRQWRAASAHEDFWRCLNFENRKISVEQFEDVCQRY 286
LTDDLLHMVFSFLD+ +LC+AA VC+QWR ASAHEDFW+ LNFE+R ISVEQFED+C RY
Sbjct: 187 LTDDLLHMVFSFLDHPNLCKAARVCKQWRGASAHEDFWKSLNFEDRNISVEQFEDMCSRY 246
Query: 287 PNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDA 346
PNAT V++ G+ AI+LLVMKA+ LRNLE LTLGRGQ+ D FFHALADCSML+ LN+ND+
Sbjct: 247 PNATAVSLSGS-AIYLLVMKAICSLRNLEFLTLGRGQIADTFFHALADCSMLRRLNINDS 305
Query: 347 TLGNGVQEIPINHDQLRRLEITKCRVMRVSIRCPQLEHLSLKRSNMAQAVLNCPLLHLLD 406
LGNG+QEI INHD+L L++TKCRVMR+++RCPQLE +SLKRSNMAQ VLNCPLLH LD
Sbjct: 306 ILGNGIQEITINHDRLCHLQLTKCRVMRIAVRCPQLETMSLKRSNMAQVVLNCPLLHELD 365
Query: 407 IASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNIS 466
I SCHKL DAAIR AATSCPQL SLDMSNCSCVSDE+LREIALSCANL L++SYC NIS
Sbjct: 366 IGSCHKLPDAAIRAAATSCPQLVSLDMSNCSCVSDETLREIALSCANLSFLDASYCSNIS 425
Query: 467 LESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRL 526
LESVRLPMLTVL+LHSCEGITSASMAAI+HSYMLEVLELDNC+LLTSVSL+LPRLQ IRL
Sbjct: 426 LESVRLPMLTVLKLHSCEGITSASMAAIAHSYMLEVLELDNCSLLTSVSLDLPRLQTIRL 485
Query: 527 VHCRKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQE 586
VHCRKFADLN+R MMLSSI+VSNC ALHRINITSNSLQKL+LQKQ++LT LALQCQ LQE
Sbjct: 486 VHCRKFADLNMRTMMLSSILVSNCPALHRINITSNSLQKLALQKQDSLTMLALQCQSLQE 545
Query: 587 VDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRFCSTSLVSLSLVGCRAITA 646
VDL++CESLTNS+C+VFSDGGGCPMLKSLVLDNCE LT VRF STSLVSLSL GCRAIT+
Sbjct: 546 VDLSECESLTNSICDVFSDGGGCPMLKSLVLDNCESLTSVRFISTSLVSLSLGGCRAITS 605
Query: 647 LELKCPILEKVCLDGCDHIESASFVPVALQSLNLGICPKLSTLGIEALHMVVLELKGCGV 706
LEL CP LEKV LDGCDH+E ASF PV L+SLNLGICPKL+ L IEA+ MV LELKGCGV
Sbjct: 606 LELTCPNLEKVILDGCDHLERASFCPVGLRSLNLGICPKLNILSIEAMFMVSLELKGCGV 665
Query: 707 LSDAYINCPLLTSLDASFC 725
LS+A +NCPLLTSLDASFC
Sbjct: 666 LSEASLNCPLLTSLDASFC 684
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356514729|ref|XP_003526056.1| PREDICTED: F-box/LRR-repeat protein 15-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 828 bits (2139), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 428/614 (69%), Positives = 496/614 (80%), Gaps = 26/614 (4%)
Query: 114 RRFDGESSGGSCSAGSKALAVEDSQHKRAKVYSASTGHYVTTGSSDAGASSSLAGG--DY 171
RR DGESS S SAG D++ KRA+VY G + S+AG SS+ DY
Sbjct: 9 RRSDGESS--SASAG-------DTRQKRARVYFDFDGTHCIVKCSNAGNSSASVEEFVDY 59
Query: 172 NVSQGSSVPGTGEIFCNYFTWNSGGDGNPFDASGGNDGGDDNGTPKTEDLEIRMDLTDDL 231
+ QGSS+ + + + G+ + FD GND K +DLE++MDLTDDL
Sbjct: 60 DNFQGSSLLRSND--------DDAGEESNFDEGDGND------ISKVDDLEVKMDLTDDL 105
Query: 232 LHMVFSFLDYVDLCRAAIVCRQWRAASAHEDFWRCLNFENRKISVEQFEDVCQRYPNATE 291
LHMVFSFLD+ +LCRAA VC+QWR ASAHEDFW+ LNFE+R ISVEQFED+C+RYPN T
Sbjct: 106 LHMVFSFLDHPNLCRAARVCKQWRTASAHEDFWKSLNFEDRNISVEQFEDICRRYPNITA 165
Query: 292 VNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNG 351
+ + G PA + LVMKA+S LRNLEALTLG+ + D FFHALADCSML+ L++NDA LG+G
Sbjct: 166 IRMSG-PASNQLVMKAISSLRNLEALTLGKTHIMDNFFHALADCSMLRRLSINDAILGSG 224
Query: 352 VQEIPINHDQLRRLEITKCRVMRVSIRCPQLEHLSLKRSNMAQAVLNCPLLHLLDIASCH 411
+QEI +NHD+L L++TKCRVMR+++RCPQLE +SLKRSNMAQ VLNCPLL LDI SCH
Sbjct: 225 LQEISVNHDRLCHLQLTKCRVMRMTVRCPQLEIMSLKRSNMAQTVLNCPLLQELDIGSCH 284
Query: 412 KLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNISLESVR 471
KL D+AIR A TSCPQL SLDMSNCS VSDE+LREI+ +CANL L++SYCPNISLE+VR
Sbjct: 285 KLPDSAIRSAVTSCPQLVSLDMSNCSSVSDETLREISQNCANLSFLDASYCPNISLETVR 344
Query: 472 LPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRK 531
LPMLTVL+LHSCEGITSASM AISHSYMLEVLELDNC+LLTSVSL+LPRLQNIRLVHCRK
Sbjct: 345 LPMLTVLKLHSCEGITSASMTAISHSYMLEVLELDNCSLLTSVSLDLPRLQNIRLVHCRK 404
Query: 532 FADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTD 591
FADLNL +MLSSI+VSNC LHRINITSNSLQKL++ KQ++LT+LALQCQ LQEVDL++
Sbjct: 405 FADLNLMTLMLSSILVSNCPVLHRINITSNSLQKLTIPKQDSLTTLALQCQSLQEVDLSE 464
Query: 592 CESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRFCSTSLVSLSLVGCRAITALELKC 651
CESL NSVC VF+DGGGCPMLKSLVLDNCE LT V+F STSL+SLSL GCRAIT LEL C
Sbjct: 465 CESLNNSVCNVFNDGGGCPMLKSLVLDNCESLTSVQFISTSLISLSLGGCRAITNLELTC 524
Query: 652 PILEKVCLDGCDHIESASFVPVALQSLNLGICPKLSTLGIEALHMVVLELKGCGVLSDAY 711
P LEKV LDGCDH+E ASF PV L SLNLGICPKL+TL IEA MV LELKGCGVLS+A+
Sbjct: 525 PNLEKVILDGCDHLERASFCPVGLLSLNLGICPKLNTLSIEAPFMVSLELKGCGVLSEAF 584
Query: 712 INCPLLTSLDASFC 725
INCPLLTSLDASFC
Sbjct: 585 INCPLLTSLDASFC 598
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297798620|ref|XP_002867194.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297313030|gb|EFH43453.1| predicted protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 819 bits (2115), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 424/620 (68%), Positives = 498/620 (80%), Gaps = 10/620 (1%)
Query: 110 IRGTRRFDGESSGGSCSAGSKALAVE---DSQHKRAKVYSA-STGHYVTTGSSDAGASSS 165
IR + GESS +A + E DS HKRAKVYS + V+ SSDAG S S
Sbjct: 81 IRLHQLVQGESSNAVAAAEEDSTMEEADHDSYHKRAKVYSGLAECRSVSGVSSDAGNSVS 140
Query: 166 LAGGDYNVSQGSSVPGTGEIFCNYFTWNSGGDGNPFDASGGNDGGDDNGTPKTEDLEIRM 225
+ + S ++FC F N G D GDDNG+ ED E+ +
Sbjct: 141 SVERNVSFGIAPSSRSDTDMFCQNFILNYS------RKDGKKDDGDDNGSSDAEDFEVHI 194
Query: 226 DLTDDLLHMVFSFLDYVDLCRAAIVCRQWRAASAHEDFWRCLNFENRKISVEQFEDVCQR 285
DLTDDLLHMVFSFL++VDLCR+A+VCRQWR ASAHEDFW+ LNFEN +IS+EQFE++C R
Sbjct: 195 DLTDDLLHMVFSFLNHVDLCRSAMVCRQWRVASAHEDFWKVLNFENIRISMEQFENMCSR 254
Query: 286 YPNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVND 345
YPNATEVN+YGAPA++ L MKA + LRNLE LT+G+G + ++FF AL +C+ML+S+ V+D
Sbjct: 255 YPNATEVNVYGAPAVNALAMKAATTLRNLEVLTIGKGHISESFFQALGECNMLRSVTVSD 314
Query: 346 ATLGNGVQEIPINHDQLRRLEITKCRVMRVSIRCPQLEHLSLKRSNMAQAVLNCPLLHLL 405
A LGNG QEI ++HD+LR L+ITKCRVMR+SIRCPQL LSLKRSNM+QA+LNCPLL LL
Sbjct: 315 AILGNGAQEIHLSHDRLRELKITKCRVMRLSIRCPQLRSLSLKRSNMSQAMLNCPLLQLL 374
Query: 406 DIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNI 465
DIASCHKL DAAIR AATSCPQLESLD+SNCSCVSDE+LREIA +CANL ILN+SYCPNI
Sbjct: 375 DIASCHKLLDAAIRSAATSCPQLESLDVSNCSCVSDETLREIAQACANLHILNASYCPNI 434
Query: 466 SLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIR 525
SLESV LPMLTVL+LHSCEGITSASM I++S LEVLELDNCNLLTSVSL L RLQ+I
Sbjct: 435 SLESVHLPMLTVLKLHSCEGITSASMTWIANSPALEVLELDNCNLLTSVSLHLSRLQSIS 494
Query: 526 LVHCRKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQ 585
LVHCRKF +LNL++ MLSSI VSNC AL RI ITSNSL++L+LQKQENLT+L LQC LQ
Sbjct: 495 LVHCRKFTELNLQSTMLSSITVSNCPALRRITITSNSLRRLALQKQENLTTLVLQCHSLQ 554
Query: 586 EVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRFCSTSLVSLSLVGCRAIT 645
EVDL+DCESL+NSVC++FSD GGCPMLKSL+LDNCE LT VRFC++SL SLSLVGCRA+T
Sbjct: 555 EVDLSDCESLSNSVCKIFSDDGGCPMLKSLILDNCESLTAVRFCNSSLASLSLVGCRAVT 614
Query: 646 ALELKCPILEKVCLDGCDHIESASFVPVALQSLNLGICPKLSTLGIEALHMVVLELKGCG 705
+LELKCP +E++CLDGCDH+E+A F PVAL+SLNLGICPKLS L IEA +MV LELKGCG
Sbjct: 615 SLELKCPRIEQICLDGCDHLETAFFQPVALRSLNLGICPKLSVLNIEAPYMVSLELKGCG 674
Query: 706 VLSDAYINCPLLTSLDASFC 725
VLS+A I CPLLTSLDASFC
Sbjct: 675 VLSEASIFCPLLTSLDASFC 694
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9SMY8 | FBL15_ARATH | No assigned EC number | 0.7037 | 0.8008 | 0.5929 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
 |
 |
 |
 |
 |
 |
 |
 |
||
 | gw1.XVIII.1028.1 | annotation not avaliable (869 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 733 | |||
| cd09293 | 226 | cd09293, AMN1, Antagonist of mitotic exit network | 7e-17 | |
| cd09293 | 226 | cd09293, AMN1, Antagonist of mitotic exit network | 4e-10 | |
| pfam12937 | 47 | pfam12937, F-box-like, F-box-like | 1e-09 | |
| cd09293 | 226 | cd09293, AMN1, Antagonist of mitotic exit network | 5e-08 | |
| smart00256 | 41 | smart00256, FBOX, A Receptor for Ubiquitination Ta | 3e-07 | |
| pfam00646 | 48 | pfam00646, F-box, F-box domain | 5e-07 | |
| cd09293 | 226 | cd09293, AMN1, Antagonist of mitotic exit network | 5e-04 | |
| smart00367 | 26 | smart00367, LRR_CC, Leucine-rich repeat - CC (cyst | 6e-04 |
| >gnl|CDD|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1 | Back alignment and domain information |
|---|
Score = 80.1 bits (198), Expect = 7e-17
Identities = 51/185 (27%), Positives = 87/185 (47%), Gaps = 23/185 (12%)
Query: 353 QEIPINHDQLRRLEITKCRV----MRVSIRCPQLEHLSLKRSN------MAQAVLNCPLL 402
Q + I H L LE+ C + + C +L+ L L S + +CP L
Sbjct: 21 QLLRILHSGLEWLELYMCPISDPPLDQLSNCNKLKKLILPGSKLIDDEGLIALAQSCPNL 80
Query: 403 HLLDIASCHKLSDAAIRLAATSCPQLESLDMS---NCSCVSDESLREIALSCANLRILNS 459
+LD+ +C ++D+ I AT+CP+L+++++ N ++D SL + +C L+ +
Sbjct: 81 QVLDLRACENITDSGIVALATNCPKLQTINLGRHRNGHLITDVSLSALGKNCTFLQTVGF 140
Query: 460 SYCPNIS------LESVRLPMLTVLQLHSCEGITSASMAAISHSYM---LEVLELDNCNL 510
+ C +++ L S L L L++C +T S+ AI S L VLE C L
Sbjct: 141 AGC-DVTDKGVWELASGCSKSLERLSLNNCRNLTDQSIPAILASNYFPNLSVLEFRGCPL 199
Query: 511 LTSVS 515
+T S
Sbjct: 200 ITDFS 204
|
Amn1 has been functionally characterized in Saccharomyces cerevisiae as a component of the Antagonist of MEN pathway (AMEN). The AMEN network is activated by MEN (mitotic exit network) via an active Cdc14, and in turn switches off MEN. Amn1 constitutes one of the alternative mechanisms by which MEN may be disrupted. Specifically, Amn1 binds Tem1 (Termination of M-phase, a GTPase that belongs to the RAS superfamily), and disrupts its association with Cdc15, the primary downstream target. Amn1 is a leucine-rich repeat (LRR) protein, with 12 repeats in the S. cerevisiae ortholog. As a negative regulator of the signal transduction pathway MEN, overexpression of AMN1 slows the growth of wild type cells. The function of the vertebrate members of this family has not been determined experimentally, they have fewer LRRs that determine the extent of this model. Length = 226 |
| >gnl|CDD|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1 | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 4e-10
Identities = 43/180 (23%), Positives = 77/180 (42%), Gaps = 38/180 (21%)
Query: 326 DAFFHALADCSMLKSLNVNDATL--GNGVQEIPINHDQLRRLEITKCR------VMRVSI 377
D L++C+ LK L + + L G+ + + L+ L++ C ++ ++
Sbjct: 42 DPPLDQLSNCNKLKKLILPGSKLIDDEGLIALAQSCPNLQVLDLRACENITDSGIVALAT 101
Query: 378 RCPQLEHLSLKRSNMAQAVL---------NCPLLHLLDIASCHKLSDAAIR-LAATSCPQ 427
CP+L+ ++L R + NC L + A C ++D + LA+
Sbjct: 102 NCPKLQTINLGRHRNGHLITDVSLSALGKNCTFLQTVGFAGCD-VTDKGVWELASGCSKS 160
Query: 428 LESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNISLESVRLPMLTVLQLHSCEGIT 487
LE L ++NC ++D+S+ IL S+Y PN+S VL+ C IT
Sbjct: 161 LERLSLNNCRNLTDQSIP---------AILASNYFPNLS----------VLEFRGCPLIT 201
|
Amn1 has been functionally characterized in Saccharomyces cerevisiae as a component of the Antagonist of MEN pathway (AMEN). The AMEN network is activated by MEN (mitotic exit network) via an active Cdc14, and in turn switches off MEN. Amn1 constitutes one of the alternative mechanisms by which MEN may be disrupted. Specifically, Amn1 binds Tem1 (Termination of M-phase, a GTPase that belongs to the RAS superfamily), and disrupts its association with Cdc15, the primary downstream target. Amn1 is a leucine-rich repeat (LRR) protein, with 12 repeats in the S. cerevisiae ortholog. As a negative regulator of the signal transduction pathway MEN, overexpression of AMN1 slows the growth of wild type cells. The function of the vertebrate members of this family has not been determined experimentally, they have fewer LRRs that determine the extent of this model. Length = 226 |
| >gnl|CDD|221867 pfam12937, F-box-like, F-box-like | Back alignment and domain information |
|---|
Score = 54.0 bits (131), Expect = 1e-09
Identities = 20/44 (45%), Positives = 29/44 (65%)
Query: 226 DLTDDLLHMVFSFLDYVDLCRAAIVCRQWRAASAHEDFWRCLNF 269
DL D++L +FS+LD DL R A+VCR+WR ++ + WR L
Sbjct: 3 DLPDEILLQIFSYLDPRDLLRLALVCRRWRELASDDSLWRRLCL 46
|
This is an F-box-like family. Length = 47 |
| >gnl|CDD|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1 | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 5e-08
Identities = 47/175 (26%), Positives = 78/175 (44%), Gaps = 32/175 (18%)
Query: 547 VSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDG 606
+SNC L ++ + + L E L +LA C LQ +DL CE++T+S + +
Sbjct: 48 LSNCNKLKKLILPGSKLID-----DEGLIALAQSCPNLQVLDLRACENITDS--GIVALA 100
Query: 607 GGCPMLKSLVLDNCEGLTVVRFCSTSLVSLSLVGCRAITALELKCPILEKVCLDGCD--- 663
CP L+++ L L+ +++AL C L+ V GCD
Sbjct: 101 TNCPKLQTINLGRHRN------G-------HLITDVSLSALGKNCTFLQTVGFAGCDVTD 147
Query: 664 --HIESASFVPVALQSLNLGICPKLSTLGIEAL-------HMVVLELKGCGVLSD 709
E AS +L+ L+L C L+ I A+ ++ VLE +GC +++D
Sbjct: 148 KGVWELASGCSKSLERLSLNNCRNLTDQSIPAILASNYFPNLSVLEFRGCPLITD 202
|
Amn1 has been functionally characterized in Saccharomyces cerevisiae as a component of the Antagonist of MEN pathway (AMEN). The AMEN network is activated by MEN (mitotic exit network) via an active Cdc14, and in turn switches off MEN. Amn1 constitutes one of the alternative mechanisms by which MEN may be disrupted. Specifically, Amn1 binds Tem1 (Termination of M-phase, a GTPase that belongs to the RAS superfamily), and disrupts its association with Cdc15, the primary downstream target. Amn1 is a leucine-rich repeat (LRR) protein, with 12 repeats in the S. cerevisiae ortholog. As a negative regulator of the signal transduction pathway MEN, overexpression of AMN1 slows the growth of wild type cells. The function of the vertebrate members of this family has not been determined experimentally, they have fewer LRRs that determine the extent of this model. Length = 226 |
| >gnl|CDD|197608 smart00256, FBOX, A Receptor for Ubiquitination Targets | Back alignment and domain information |
|---|
Score = 47.0 bits (113), Expect = 3e-07
Identities = 16/39 (41%), Positives = 21/39 (53%)
Query: 227 LTDDLLHMVFSFLDYVDLCRAAIVCRQWRAASAHEDFWR 265
L D++L + S LD DL R V R+WR+ DFW
Sbjct: 1 LPDEILEEILSKLDPKDLLRLRKVSRKWRSLIDSHDFWF 39
|
Length = 41 |
| >gnl|CDD|201368 pfam00646, F-box, F-box domain | Back alignment and domain information |
|---|
Score = 46.4 bits (111), Expect = 5e-07
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 226 DLTDDLLHMVFSFLDYVDLCRAAIVCRQWRAASAHEDFWR 265
DL DDLL + S LD DL R ++V ++WR+ W+
Sbjct: 5 DLPDDLLLEILSRLDPKDLLRLSLVSKRWRSLVDSLKLWK 44
|
This domain is approximately 50 amino acids long, and is usually found in the N-terminal half of a variety of proteins. Two motifs that are commonly found associated with the F-box domain are the leucine rich repeats (LRRs; pfam00560 and pfam07723) and the WD repeat (pfam00400). The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression. Length = 48 |
| >gnl|CDD|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1 | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 5e-04
Identities = 25/108 (23%), Positives = 42/108 (38%), Gaps = 23/108 (21%)
Query: 628 FCSTSLVSLSLVGCRAIT-----ALELKCPILEKVCLDGCDHIESASFVPVALQSLNLGI 682
L L L G + I AL CP L+ + L C++I + V +A
Sbjct: 49 SNCNKLKKLILPGSKLIDDEGLIALAQSCPNLQVLDLRACENITDSGIVALATN------ 102
Query: 683 CPKLSTLGIEALHMVVLELKGCGVLSDAYI-----NCPLLTSLDASFC 725
CPKL T+ + + +++D + NC L ++ + C
Sbjct: 103 CPKLQTINLG-------RHRNGHLITDVSLSALGKNCTFLQTVGFAGC 143
|
Amn1 has been functionally characterized in Saccharomyces cerevisiae as a component of the Antagonist of MEN pathway (AMEN). The AMEN network is activated by MEN (mitotic exit network) via an active Cdc14, and in turn switches off MEN. Amn1 constitutes one of the alternative mechanisms by which MEN may be disrupted. Specifically, Amn1 binds Tem1 (Termination of M-phase, a GTPase that belongs to the RAS superfamily), and disrupts its association with Cdc15, the primary downstream target. Amn1 is a leucine-rich repeat (LRR) protein, with 12 repeats in the S. cerevisiae ortholog. As a negative regulator of the signal transduction pathway MEN, overexpression of AMN1 slows the growth of wild type cells. The function of the vertebrate members of this family has not been determined experimentally, they have fewer LRRs that determine the extent of this model. Length = 226 |
| >gnl|CDD|197685 smart00367, LRR_CC, Leucine-rich repeat - CC (cysteine-containing) subfamily | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 6e-04
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 425 CPQLESLDMSNCSCVSDESLREIA 448
CP L LD+S C+ ++DE L+ +A
Sbjct: 1 CPNLRELDLSGCTNITDEGLQALA 24
|
Length = 26 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 733 | |||
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 99.93 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 99.91 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 99.91 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 99.91 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 99.79 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 99.77 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.77 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 99.74 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.74 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.55 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.52 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.47 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.32 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.27 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.24 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.18 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.17 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 99.12 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 99.06 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 99.05 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 98.98 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 98.92 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 98.89 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 98.88 | |
| PF12937 | 47 | F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B | 98.86 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 98.82 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 98.74 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 98.66 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 98.61 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 98.6 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 98.34 | |
| smart00256 | 41 | FBOX A Receptor for Ubiquitination Targets. | 98.33 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 98.25 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 98.19 | |
| PF00646 | 48 | F-box: F-box domain; InterPro: IPR001810 The F-box | 98.13 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 98.04 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 98.04 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 98.02 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 98.01 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 98.0 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 97.93 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 97.88 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 97.81 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 97.77 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 97.7 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 97.68 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 97.62 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 97.58 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 97.53 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 97.46 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 97.05 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 96.98 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 96.9 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 96.8 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 96.64 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 96.53 | |
| KOG2997 | 366 | consensus F-box protein FBX9 [General function pre | 96.52 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 96.3 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 96.29 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 96.28 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 96.11 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 96.03 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 95.97 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 95.29 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 95.24 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 94.33 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 94.21 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 93.9 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 93.82 | |
| PLN03215 | 373 | ascorbic acid mannose pathway regulator 1; Provisi | 93.58 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 93.2 | |
| smart00367 | 26 | LRR_CC Leucine-rich repeat - CC (cysteine-containi | 93.17 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 92.94 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 92.94 | |
| smart00367 | 26 | LRR_CC Leucine-rich repeat - CC (cysteine-containi | 92.42 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 91.34 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 91.25 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 88.56 | |
| PF13013 | 109 | F-box-like_2: F-box-like domain | 86.96 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 85.06 | |
| PF13504 | 17 | LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO | 82.36 |
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.6e-27 Score=241.80 Aligned_cols=299 Identities=27% Similarity=0.479 Sum_probs=245.8
Q ss_pred CCCHHHHHHHHhcCChhhHHHHHHHHHHHHHhhcCCCCeeEEeeCC--CCCCHHHHHHHHhhCC-CccEEEEcCCCchhH
Q 004729 226 DLTDDLLHMVFSFLDYVDLCRAAIVCRQWRAASAHEDFWRCLNFEN--RKISVEQFEDVCQRYP-NATEVNIYGAPAIHL 302 (733)
Q Consensus 226 ~LP~ElL~~If~~L~~~dl~~~~lVck~W~~l~~~~~lw~~l~l~~--~~~~~~~l~~~~~~~~-~L~~L~L~~~~~~~~ 302 (733)
.||+|++..||++|+.+.+++++.+|+.|.-.+.+..-|.++++.. ..+....+..+++|+. .++.|.++|+.....
T Consensus 74 ~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~~~q~idL~t~~rDv~g~VV~~~~~Rcgg~lk~LSlrG~r~v~~ 153 (483)
T KOG4341|consen 74 SLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGSCWQHIDLFTFQRDVDGGVVENMISRCGGFLKELSLRGCRAVGD 153 (483)
T ss_pred cCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccccceeeehhcchhcCCCcceehHhhhhccccccccccccccCCc
Confidence 7999999999999999999999999999999999999999999876 4455566777888876 589999999987777
Q ss_pred HHHHHhh-cCCCCCEEEecCc-cCChHHHHhcc-CCCCCcEEEEecCc-CCcc-cccccccCCCccEEEeeccccchhcc
Q 004729 303 LVMKAVS-LLRNLEALTLGRG-QLGDAFFHALA-DCSMLKSLNVNDAT-LGNG-VQEIPINHDQLRRLEITKCRVMRVSI 377 (733)
Q Consensus 303 ~~~~~l~-~l~~L~~L~Ls~~-~i~~~~~~~L~-~~~~L~~L~L~~~~-l~~~-~~~~~~~~~~L~~L~L~~~~~~~i~~ 377 (733)
.....+. .+|++++|.+.++ .+++.....++ .|++|++|++..|. +++. +..+...|++|++|+++.|+
T Consensus 154 sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~------ 227 (483)
T KOG4341|consen 154 SSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCP------ 227 (483)
T ss_pred chhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCc------
Confidence 6665554 8999999999887 67777666665 58999999998865 3332 23355667777777766653
Q ss_pred cCCCCcEEEEcCCchHHHhhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCCCCCChhHHHHHHHhccccccc
Q 004729 378 RCPQLEHLSLKRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRIL 457 (733)
Q Consensus 378 ~~~~L~~L~L~~~~l~~~~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L 457 (733)
+ ++++++..+..++..++.+.+.+|.......+..+...++.+.++++..|..++|..+..+...|..|+.|
T Consensus 228 ---q-----i~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l 299 (483)
T KOG4341|consen 228 ---Q-----ISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVL 299 (483)
T ss_pred ---h-----hhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhh
Confidence 2 24478888899999999998889999999999888888999999999999999999999999899999999
Q ss_pred ccccCCCCCcCCC-----CCCCccEEEeCCCCCCchHHHHHhh-CCCCcCEEEEecCCCCccc-----ccCCCCCcEEEe
Q 004729 458 NSSYCPNISLESV-----RLPMLTVLQLHSCEGITSASMAAIS-HSYMLEVLELDNCNLLTSV-----SLELPRLQNIRL 526 (733)
Q Consensus 458 ~L~~~~~l~~~~~-----~l~~L~~L~L~~c~~l~~~~~~~l~-~~~~L~~L~L~~~~~l~~~-----~~~l~~L~~L~L 526 (733)
..++|..++.... ++++|+.|.+.+|..+++.++..++ +++.|+.+++..|..+++. ...+|.|+.+.+
T Consensus 300 ~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lsl 379 (483)
T KOG4341|consen 300 CYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSL 379 (483)
T ss_pred cccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCCh
Confidence 9999988765443 6899999999999999999999998 5789999999988765543 345788888888
Q ss_pred ccccCCcccccc
Q 004729 527 VHCRKFADLNLR 538 (733)
Q Consensus 527 ~~c~~l~~l~l~ 538 (733)
.+|..+++.++.
T Consensus 380 shce~itD~gi~ 391 (483)
T KOG4341|consen 380 SHCELITDEGIR 391 (483)
T ss_pred hhhhhhhhhhhh
Confidence 888887777543
|
|
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.5e-23 Score=257.07 Aligned_cols=400 Identities=19% Similarity=0.145 Sum_probs=209.4
Q ss_pred CCCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEEeeccccch----hcccCCCCcEEE
Q 004729 311 LRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMR----VSIRCPQLEHLS 386 (733)
Q Consensus 311 l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~----i~~~~~~L~~L~ 386 (733)
+++|++|+|++|.+....+..++.+++|++|++++|.+...++.....+++|++|++.+|.+.. ....+++|+.|+
T Consensus 139 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 218 (968)
T PLN00113 139 IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIY 218 (968)
T ss_pred cCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEE
Confidence 4455555555555544444445555555555555555444444444445555555555554321 112344555555
Q ss_pred EcCCchH----HHhhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCCCCCChhHHHHHHHhcccccccccccC
Q 004729 387 LKRSNMA----QAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYC 462 (733)
Q Consensus 387 L~~~~l~----~~~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~ 462 (733)
+++|.+. ..+..+++|++|++++|. +.. .++..+..+++|+.|+++++. +....... ...+++|++|++++|
T Consensus 219 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~-~~p~~l~~l~~L~~L~L~~n~-l~~~~p~~-l~~l~~L~~L~Ls~n 294 (968)
T PLN00113 219 LGYNNLSGEIPYEIGGLTSLNHLDLVYNN-LTG-PIPSSLGNLKNLQYLFLYQNK-LSGPIPPS-IFSLQKLISLDLSDN 294 (968)
T ss_pred CcCCccCCcCChhHhcCCCCCEEECcCce-ecc-ccChhHhCCCCCCEEECcCCe-eeccCchh-HhhccCcCEEECcCC
Confidence 5554332 223445555555555532 211 122233445555555555543 22211111 124455555555544
Q ss_pred CC---CCcCCCCCCCccEEEeCCCCCCchHHHHHhhCCCCcCEEEEecCCCCccccc---CCCCCcEEEecccc------
Q 004729 463 PN---ISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSL---ELPRLQNIRLVHCR------ 530 (733)
Q Consensus 463 ~~---l~~~~~~l~~L~~L~L~~c~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~---~l~~L~~L~L~~c~------ 530 (733)
.. ++.....+++|+.|++.++ .+.......+..+++|+.|++++|.....+|. .+++|+.|++.++.
T Consensus 295 ~l~~~~p~~~~~l~~L~~L~l~~n-~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p 373 (968)
T PLN00113 295 SLSGEIPELVIQLQNLEILHLFSN-NFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIP 373 (968)
T ss_pred eeccCCChhHcCCCCCcEEECCCC-ccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCC
Confidence 31 1111224455555555552 23333333444555555555555543333332 13445555443321
Q ss_pred -------CCcccccccccccee---ecccCcCCceeeeccCccccccccccccHHHHHhcCCCCcEEeecCCCCCChhhh
Q 004729 531 -------KFADLNLRAMMLSSI---MVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVC 600 (733)
Q Consensus 531 -------~l~~l~l~~~~L~~l---~l~~c~~L~~L~l~~n~L~~l~~~~~~~L~~l~~~~~~L~~L~Ls~C~~lt~~~~ 600 (733)
.++.+.+..+.+... .+..|++|+.|++.+|.++...+ .....+++|+.|++++| .++....
T Consensus 374 ~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p-------~~~~~l~~L~~L~Ls~N-~l~~~~~ 445 (968)
T PLN00113 374 EGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELP-------SEFTKLPLVYFLDISNN-NLQGRIN 445 (968)
T ss_pred hhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECC-------hhHhcCCCCCEEECcCC-cccCccC
Confidence 112222222222111 25667888888888888765322 12236778888888884 5655433
Q ss_pred hhhcCCCCCCCccEEEeecCCCCccccc--cCCCccEEeccccccccccc---cccccccEEecccccccccc--cc-cc
Q 004729 601 EVFSDGGGCPMLKSLVLDNCEGLTVVRF--CSTSLVSLSLVGCRAITALE---LKCPILEKVCLDGCDHIESA--SF-VP 672 (733)
Q Consensus 601 ~~~~~~~~l~~L~~L~L~~c~~L~~~~~--~~~sL~~L~L~~c~~L~~l~---~~~p~L~~L~L~~c~~L~~~--~~-~~ 672 (733)
..+ ..+++|+.|++++|.....++. ...+|+.|++++|.--..++ ..+++|++|++++|.-.... .+ ..
T Consensus 446 ~~~---~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 522 (968)
T PLN00113 446 SRK---WDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSC 522 (968)
T ss_pred hhh---ccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCc
Confidence 333 4578899999988864444433 45788889988864332333 25788899999886433221 11 23
Q ss_pred cCCcEEEecCCCCccc-ccc---CcccccEEEecCCCCCCccCC---CCCCccEEeccCccc
Q 004729 673 VALQSLNLGICPKLST-LGI---EALHMVVLELKGCGVLSDAYI---NCPLLTSLDASFCRC 727 (733)
Q Consensus 673 ~~L~~L~L~~c~~L~~-l~~---~~~~L~~L~l~~c~~L~~~~~---~~p~L~~L~l~~C~~ 727 (733)
.+|++|+|++|. ++. +|. ...+|+.|++++|.....+.. ++++|+.|++++|+-
T Consensus 523 ~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l 583 (968)
T PLN00113 523 KKLVSLDLSHNQ-LSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHL 583 (968)
T ss_pred cCCCEEECCCCc-ccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcc
Confidence 478889998885 443 332 123688899998877544433 678899999988874
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1e-24 Score=213.46 Aligned_cols=269 Identities=19% Similarity=0.341 Sum_probs=197.5
Q ss_pred ccCCCHHHHHHHHhcCChhhHHHHHHHHHHHHHhhcCCCCeeEEeeCCCCCCHHHHHHHHhhCCCccEEEEcCCCchhHH
Q 004729 224 RMDLTDDLLHMVFSFLDYVDLCRAAIVCRQWRAASAHEDFWRCLNFENRKISVEQFEDVCQRYPNATEVNIYGAPAIHLL 303 (733)
Q Consensus 224 ~~~LP~ElL~~If~~L~~~dl~~~~lVck~W~~l~~~~~lw~~l~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~ 303 (733)
|..|||||+..||+.|+.+++.+++.||||||+++.+..+|.++++..+.+.+..+..+.++ ++..+.+.........
T Consensus 98 ~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~lDl~~r~i~p~~l~~l~~r--gV~v~Rlar~~~~~pr 175 (419)
T KOG2120|consen 98 WDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQTLDLTGRNIHPDVLGRLLSR--GVIVFRLARSFMDQPR 175 (419)
T ss_pred cccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceeeeccCCCccChhHHHHHHhC--CeEEEEcchhhhcCch
Confidence 78999999999999999999999999999999999999999999999999999999988875 4555554431111111
Q ss_pred HHHHhh-cCCCCCEEEecCccCChH-HHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEEeeccccchhcccCCC
Q 004729 304 VMKAVS-LLRNLEALTLGRGQLGDA-FFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIRCPQ 381 (733)
Q Consensus 304 ~~~~l~-~l~~L~~L~Ls~~~i~~~-~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~i~~~~~~ 381 (733)
..+.+. .-..|++|||+...++.. ....++.|.+|+.|.|.++.+.+.+..-.....+|+.|+++.|+..
T Consensus 176 lae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~-------- 247 (419)
T KOG2120|consen 176 LAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGF-------- 247 (419)
T ss_pred hhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeecccccccc--------
Confidence 222233 234699999999988854 4556788999999999999998887777778888888888887532
Q ss_pred CcEEEEcCCchHHHhhCCCCccEEEEecCCCCChHHHHHHHhc-CCCCcEEeccCCCC-CChhHHHHHHHhccccccccc
Q 004729 382 LEHLSLKRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATS-CPQLESLDMSNCSC-VSDESLREIALSCANLRILNS 459 (733)
Q Consensus 382 L~~L~L~~~~l~~~~~~~~~L~~L~L~~c~~l~~~~l~~l~~~-~~~L~~L~L~~~~~-l~~~~l~~l~~~~~~L~~L~L 459 (733)
+.+.+.-++.+|..|..|+|++|....+. ...+..+ -++|..|+++++.. +.+..+..+...||+|.+|+|
T Consensus 248 ------t~n~~~ll~~scs~L~~LNlsWc~l~~~~-Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDL 320 (419)
T KOG2120|consen 248 ------TENALQLLLSSCSRLDELNLSWCFLFTEK-VTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDL 320 (419)
T ss_pred ------chhHHHHHHHhhhhHhhcCchHhhccchh-hhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeecc
Confidence 33455566777788888888887654444 3333333 35777788877653 444556666777777777777
Q ss_pred ccCCCCCcC----CCCCCCccEEEeCCCCCCchHHHHHhhCCCCcCEEEEecCC
Q 004729 460 SYCPNISLE----SVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCN 509 (733)
Q Consensus 460 ~~~~~l~~~----~~~l~~L~~L~L~~c~~l~~~~~~~l~~~~~L~~L~L~~~~ 509 (733)
++|..+... ..+++.|++|.++.|..+....+..+...|+|.+|++.+|-
T Consensus 321 SD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 321 SDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred ccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEecccc
Confidence 777655542 23677777777777777776666666667777777777663
|
|
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.4e-23 Score=253.88 Aligned_cols=399 Identities=18% Similarity=0.190 Sum_probs=197.6
Q ss_pred cCCCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEEeeccccch-h---cccCCCCcEE
Q 004729 310 LLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMR-V---SIRCPQLEHL 385 (733)
Q Consensus 310 ~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~-i---~~~~~~L~~L 385 (733)
.+++|++|+|++|.+....+. ..+++|++|+|++|.+...++.....+++|++|++++|.+.. + ...+++|+.|
T Consensus 116 ~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 193 (968)
T PLN00113 116 TSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFL 193 (968)
T ss_pred cCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCee
Confidence 445555555555544322221 234555555555555444444444455555555555554321 1 1234555555
Q ss_pred EEcCCchH----HHhhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCCCCCChhHHHHHHHhccccccccccc
Q 004729 386 SLKRSNMA----QAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSY 461 (733)
Q Consensus 386 ~L~~~~l~----~~~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~ 461 (733)
++++|.+. ..+..+++|++|+++++. +.. .++..+..+++|++|+++++. ++.. ++..+..+++|+.|.+++
T Consensus 194 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~-~~p~~l~~l~~L~~L~L~~n~-l~~~-~p~~l~~l~~L~~L~L~~ 269 (968)
T PLN00113 194 TLASNQLVGQIPRELGQMKSLKWIYLGYNN-LSG-EIPYEIGGLTSLNHLDLVYNN-LTGP-IPSSLGNLKNLQYLFLYQ 269 (968)
T ss_pred eccCCCCcCcCChHHcCcCCccEEECcCCc-cCC-cCChhHhcCCCCCEEECcCce-eccc-cChhHhCCCCCCEEECcC
Confidence 55554432 234455555555555532 221 122233445556666665554 2221 122223455566666655
Q ss_pred CCC---CCcCCCCCCCccEEEeCCCCCCchHHHHHhhCCCCcCEEEEecCCCCccccc---CCCCCcEEEeccccCCccc
Q 004729 462 CPN---ISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSL---ELPRLQNIRLVHCRKFADL 535 (733)
Q Consensus 462 ~~~---l~~~~~~l~~L~~L~L~~c~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~---~l~~L~~L~L~~c~~l~~l 535 (733)
+.. ++.....+++|++|++++| .+.......+..+++|+.|++++|......+. .+++|+.|.+.++.-...+
T Consensus 270 n~l~~~~p~~l~~l~~L~~L~Ls~n-~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 348 (968)
T PLN00113 270 NKLSGPIPPSIFSLQKLISLDLSDN-SLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEI 348 (968)
T ss_pred CeeeccCchhHhhccCcCEEECcCC-eeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcC
Confidence 442 1222234556666666653 23333334455566666666666544333332 2456666665544211111
Q ss_pred cccccccceeecccCcCCceeeeccCccccccccccc-----------------cHHHHHhcCCCCcEEeecCCCCCChh
Q 004729 536 NLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQE-----------------NLTSLALQCQCLQEVDLTDCESLTNS 598 (733)
Q Consensus 536 ~l~~~~L~~l~l~~c~~L~~L~l~~n~L~~l~~~~~~-----------------~L~~l~~~~~~L~~L~Ls~C~~lt~~ 598 (733)
. -.+..+++|+.|++++|.+....+.... .+......+++|+.|++++| .++..
T Consensus 349 p--------~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n-~l~~~ 419 (968)
T PLN00113 349 P--------KNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDN-SFSGE 419 (968)
T ss_pred C--------hHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCC-EeeeE
Confidence 0 0134455566666666555432111000 01111234566777777664 44433
Q ss_pred hhhhhcCCCCCCCccEEEeecCCCCcccc---ccCCCccEEecccccccccccc--ccccccEEecccccccccc--cc-
Q 004729 599 VCEVFSDGGGCPMLKSLVLDNCEGLTVVR---FCSTSLVSLSLVGCRAITALEL--KCPILEKVCLDGCDHIESA--SF- 670 (733)
Q Consensus 599 ~~~~~~~~~~l~~L~~L~L~~c~~L~~~~---~~~~sL~~L~L~~c~~L~~l~~--~~p~L~~L~L~~c~~L~~~--~~- 670 (733)
.+..+ ..+++|+.|+++++.-...++ ..+++|+.|++++|.-...++. ..++|+.|++++|.-.... .+
T Consensus 420 ~p~~~---~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~ 496 (968)
T PLN00113 420 LPSEF---TKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLG 496 (968)
T ss_pred CChhH---hcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChhhh
Confidence 33333 456677777776663222222 2566777777777654433332 3467888888775432221 11
Q ss_pred cccCCcEEEecCCCCccccccC---cccccEEEecCCCCCCcc---CCCCCCccEEeccCccc
Q 004729 671 VPVALQSLNLGICPKLSTLGIE---ALHMVVLELKGCGVLSDA---YINCPLLTSLDASFCRC 727 (733)
Q Consensus 671 ~~~~L~~L~L~~c~~L~~l~~~---~~~L~~L~l~~c~~L~~~---~~~~p~L~~L~l~~C~~ 727 (733)
...+|++|++++|.-...+|.. ..+|+.|+|++|.....+ ..++++|+.|++++|.-
T Consensus 497 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 559 (968)
T PLN00113 497 SLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQL 559 (968)
T ss_pred hhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcc
Confidence 2346788888887533334421 235888888887754333 33788999999988864
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.8e-20 Score=194.50 Aligned_cols=339 Identities=21% Similarity=0.260 Sum_probs=193.9
Q ss_pred CCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEEeeccccchhc----ccCCCCcEEEEcC
Q 004729 314 LEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVS----IRCPQLEHLSLKR 389 (733)
Q Consensus 314 L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~i~----~~~~~L~~L~L~~ 389 (733)
-+.|++++|.+.+.-+..+.++++|+.+++..|.+. .++.+.....+|+.|+|.+|.+..+. ...|.|+.|+|+.
T Consensus 80 t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSr 158 (873)
T KOG4194|consen 80 TQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSR 158 (873)
T ss_pred eeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhh
Confidence 345666666665555555556666666666665544 34444444555666666666554332 2355666666666
Q ss_pred CchHHH----hhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCCCCCChhHHHHHHHhcccccccccccCCC-
Q 004729 390 SNMAQA----VLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPN- 464 (733)
Q Consensus 390 ~~l~~~----~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~~- 464 (733)
|.+..+ +..-+++++|+|++ +.|++.... .+..+.+|..|.|+.+. ++... ...+.++++|+.|+|..+..
T Consensus 159 N~is~i~~~sfp~~~ni~~L~La~-N~It~l~~~-~F~~lnsL~tlkLsrNr-ittLp-~r~Fk~L~~L~~LdLnrN~ir 234 (873)
T KOG4194|consen 159 NLISEIPKPSFPAKVNIKKLNLAS-NRITTLETG-HFDSLNSLLTLKLSRNR-ITTLP-QRSFKRLPKLESLDLNRNRIR 234 (873)
T ss_pred chhhcccCCCCCCCCCceEEeecc-ccccccccc-cccccchheeeecccCc-ccccC-HHHhhhcchhhhhhcccccee
Confidence 655544 22224566666666 344443322 22334566666666655 33322 22333566666666665441
Q ss_pred -C-CcCCCCCCCccEEEeCCCCCCchHHHHHhhCCCCcCEEEEecCCCCccccc----CCCCCcEEEeccccCCcccccc
Q 004729 465 -I-SLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSL----ELPRLQNIRLVHCRKFADLNLR 538 (733)
Q Consensus 465 -l-~~~~~~l~~L~~L~L~~c~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~----~l~~L~~L~L~~c~~l~~l~l~ 538 (733)
+ .....+++.|+.|.+.. +.+....-.++-.+.++++|+|+.|. +..+.. .++.|+.| .++
T Consensus 235 ive~ltFqgL~Sl~nlklqr-N~I~kL~DG~Fy~l~kme~l~L~~N~-l~~vn~g~lfgLt~L~~L-----------~lS 301 (873)
T KOG4194|consen 235 IVEGLTFQGLPSLQNLKLQR-NDISKLDDGAFYGLEKMEHLNLETNR-LQAVNEGWLFGLTSLEQL-----------DLS 301 (873)
T ss_pred eehhhhhcCchhhhhhhhhh-cCcccccCcceeeecccceeecccch-hhhhhcccccccchhhhh-----------ccc
Confidence 1 12223566666666665 44443332334456667777777663 222221 23333333 334
Q ss_pred cccccee---ecccCcCCceeeeccCccccccccccccHHHHHhcCCCCcEEeecCCCCCChhhhhhhcCCCCCCCccEE
Q 004729 539 AMMLSSI---MVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSL 615 (733)
Q Consensus 539 ~~~L~~l---~l~~c~~L~~L~l~~n~L~~l~~~~~~~L~~l~~~~~~L~~L~Ls~C~~lt~~~~~~~~~~~~l~~L~~L 615 (733)
++.+..+ ..+.|++|+.|++++|+++.+.......|. .|++|.|++ +.++...--.| .++.+|++|
T Consensus 302 ~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~-------~Le~LnLs~-Nsi~~l~e~af---~~lssL~~L 370 (873)
T KOG4194|consen 302 YNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLS-------QLEELNLSH-NSIDHLAEGAF---VGLSSLHKL 370 (873)
T ss_pred hhhhheeecchhhhcccceeEeccccccccCChhHHHHHH-------Hhhhhcccc-cchHHHHhhHH---HHhhhhhhh
Confidence 4444444 256788999999999998888654444333 888999988 67765443334 457888888
Q ss_pred EeecCCC---Cccc--c-ccCCCccEEecccccccccccc----ccccccEEeccccc--ccccccccccCCcEEEecC
Q 004729 616 VLDNCEG---LTVV--R-FCSTSLVSLSLVGCRAITALEL----KCPILEKVCLDGCD--HIESASFVPVALQSLNLGI 682 (733)
Q Consensus 616 ~L~~c~~---L~~~--~-~~~~sL~~L~L~~c~~L~~l~~----~~p~L~~L~L~~c~--~L~~~~~~~~~L~~L~L~~ 682 (733)
+|+.+.- +++. + ..+++|++|.+.| ++|++++. ++++|++|+|.+.. .+.-..|.+..|+.|.+..
T Consensus 371 dLr~N~ls~~IEDaa~~f~gl~~LrkL~l~g-Nqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~nS 448 (873)
T KOG4194|consen 371 DLRSNELSWCIEDAAVAFNGLPSLRKLRLTG-NQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPMELKELVMNS 448 (873)
T ss_pred cCcCCeEEEEEecchhhhccchhhhheeecC-ceeeecchhhhccCcccceecCCCCcceeecccccccchhhhhhhcc
Confidence 8877521 2221 1 2688889999888 67887763 78999999998822 2333456666777776543
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.6e-19 Score=185.09 Aligned_cols=271 Identities=28% Similarity=0.498 Sum_probs=165.5
Q ss_pred CchHHHhhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCCCCCChhHHHHHHHhcccccccccccCCCCCcCC
Q 004729 390 SNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNISLES 469 (733)
Q Consensus 390 ~~l~~~~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~ 469 (733)
..+..+...||++++|.+.+|.++++..+..+...|++|++|++..|..+++..+..+...|++|++|+++.|+.+....
T Consensus 154 sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~g 233 (483)
T KOG4341|consen 154 SSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNG 233 (483)
T ss_pred chhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCc
Confidence 34556677899999999999999999999999999999999999999989999999999999999999999988766533
Q ss_pred C-----CCCCccEEEeCCCCCCchHHHHHhh-CCCCcCEEEEecCCCCcccccCCCCCcEEEeccccCCccccccccccc
Q 004729 470 V-----RLPMLTVLQLHSCEGITSASMAAIS-HSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAMMLS 543 (733)
Q Consensus 470 ~-----~l~~L~~L~L~~c~~l~~~~~~~l~-~~~~L~~L~L~~~~~l~~~~~~l~~L~~L~L~~c~~l~~l~l~~~~L~ 543 (733)
+ ++..++.+.+.+|....+..+..+. .+.-+.++++..|..+++ .+
T Consensus 234 v~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD---------------------~~------- 285 (483)
T KOG4341|consen 234 VQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTD---------------------ED------- 285 (483)
T ss_pred chHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccc---------------------hH-------
Confidence 3 4556677766677766666555444 233344444444433332 22
Q ss_pred eeecccCcCCceeeeccCccccccccccccHHHHHhcCCCCcEEeecCCCCCChhhhhhhcCCCCCCCccEEEeecCCCC
Q 004729 544 SIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGL 623 (733)
Q Consensus 544 ~l~l~~c~~L~~L~l~~n~L~~l~~~~~~~L~~l~~~~~~L~~L~Ls~C~~lt~~~~~~~~~~~~l~~L~~L~L~~c~~L 623 (733)
+..+..+|..|+.|+.++|..+++.+...+ .+++++|+.|.+.+|..+
T Consensus 286 ------------------------------~~~i~~~c~~lq~l~~s~~t~~~d~~l~aL--g~~~~~L~~l~l~~c~~f 333 (483)
T KOG4341|consen 286 ------------------------------LWLIACGCHALQVLCYSSCTDITDEVLWAL--GQHCHNLQVLELSGCQQF 333 (483)
T ss_pred ------------------------------HHHHhhhhhHhhhhcccCCCCCchHHHHHH--hcCCCceEEEeccccchh
Confidence 222333344444444444444444443333 234444555554444444
Q ss_pred ccccc-----cCCCccEEecccccc-----ccccccccccccEEeccccccccccccc--------ccCCcEEEecCCCC
Q 004729 624 TVVRF-----CSTSLVSLSLVGCRA-----ITALELKCPILEKVCLDGCDHIESASFV--------PVALQSLNLGICPK 685 (733)
Q Consensus 624 ~~~~~-----~~~sL~~L~L~~c~~-----L~~l~~~~p~L~~L~L~~c~~L~~~~~~--------~~~L~~L~L~~c~~ 685 (733)
++..+ .+..|+.+++.+|.. |.++..+||.|+.|.+++|..+++.|+. ...+..+.+.+||.
T Consensus 334 sd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~ 413 (483)
T KOG4341|consen 334 SDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPL 413 (483)
T ss_pred hhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCC
Confidence 43322 344455555554433 3445568888888888888888876542 22445555555555
Q ss_pred ccccccCc----ccccEEEecCCCCCCccCC-----CCCCccEE
Q 004729 686 LSTLGIEA----LHMVVLELKGCGVLSDAYI-----NCPLLTSL 720 (733)
Q Consensus 686 L~~l~~~~----~~L~~L~l~~c~~L~~~~~-----~~p~L~~L 720 (733)
+++-..+. ..|+.+++.+|..++...+ ++|+++..
T Consensus 414 i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~ 457 (483)
T KOG4341|consen 414 ITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVH 457 (483)
T ss_pred chHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceeh
Confidence 44433221 2355556666665554444 45555443
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.6e-17 Score=204.70 Aligned_cols=339 Identities=21% Similarity=0.267 Sum_probs=200.0
Q ss_pred HHhccCCCCCcEEEEecCcCCc------cccccccc-CCCccEEEeeccccchhccc--CCCCcEEEEcCCchHHH---h
Q 004729 329 FHALADCSMLKSLNVNDATLGN------GVQEIPIN-HDQLRRLEITKCRVMRVSIR--CPQLEHLSLKRSNMAQA---V 396 (733)
Q Consensus 329 ~~~L~~~~~L~~L~L~~~~l~~------~~~~~~~~-~~~L~~L~L~~~~~~~i~~~--~~~L~~L~L~~~~l~~~---~ 396 (733)
...+..+++|+.|.+..+.... .++.-+.. .++|+.|.+.++++..++.. +.+|+.|++.++.+..+ .
T Consensus 551 ~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~ 630 (1153)
T PLN03210 551 ENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGV 630 (1153)
T ss_pred HHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCcccccccccc
Confidence 3456778999999987653211 12221222 35689999988887766643 56899999988877654 3
Q ss_pred hCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCCCCCChhHHHHHHHhcccccccccccCCCCCcC--CCCCCC
Q 004729 397 LNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNISLE--SVRLPM 474 (733)
Q Consensus 397 ~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~--~~~l~~ 474 (733)
..+++|+.|++++|..+...+ . +..+++|+.|++.+|..+.. ++.....+++|+.|++++|..+... ...+++
T Consensus 631 ~~l~~Lk~L~Ls~~~~l~~ip--~-ls~l~~Le~L~L~~c~~L~~--lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~s 705 (1153)
T PLN03210 631 HSLTGLRNIDLRGSKNLKEIP--D-LSMATNLETLKLSDCSSLVE--LPSSIQYLNKLEDLDMSRCENLEILPTGINLKS 705 (1153)
T ss_pred ccCCCCCEEECCCCCCcCcCC--c-cccCCcccEEEecCCCCccc--cchhhhccCCCCEEeCCCCCCcCccCCcCCCCC
Confidence 467889999998876554432 2 45678899999998875432 3334457788888888888754322 226778
Q ss_pred ccEEEeCCCCCCchHHHHHhhCCCCcCEEEEecCCCCcccccC--CCCCcEEEeccccCCccccccccccceeecccCcC
Q 004729 475 LTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLE--LPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAA 552 (733)
Q Consensus 475 L~~L~L~~c~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~--l~~L~~L~L~~c~~l~~l~l~~~~L~~l~l~~c~~ 552 (733)
|+.|++++|..+.... ....+|++|+++++. +..+|.. +++|+.|.+..+....-.. ....+..+....+++
T Consensus 706 L~~L~Lsgc~~L~~~p----~~~~nL~~L~L~~n~-i~~lP~~~~l~~L~~L~l~~~~~~~l~~-~~~~l~~~~~~~~~s 779 (1153)
T PLN03210 706 LYRLNLSGCSRLKSFP----DISTNISWLDLDETA-IEEFPSNLRLENLDELILCEMKSEKLWE-RVQPLTPLMTMLSPS 779 (1153)
T ss_pred CCEEeCCCCCCccccc----cccCCcCeeecCCCc-cccccccccccccccccccccchhhccc-cccccchhhhhcccc
Confidence 8888888876543221 124578888888764 5555543 4566666665433211000 000011111223456
Q ss_pred CceeeeccCccccccccccccHHHHHhcCCCCcEEeecCCCCCChhhhhhhcCCCCCCCccEEEeecCCCCccccccCCC
Q 004729 553 LHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRFCSTS 632 (733)
Q Consensus 553 L~~L~l~~n~L~~l~~~~~~~L~~l~~~~~~L~~L~Ls~C~~lt~~~~~~~~~~~~l~~L~~L~L~~c~~L~~~~~~~~s 632 (733)
|+.|++.+|....- +..-...+++|+.|++++|+.++. ++....+++|+.|+|++|..+..++....+
T Consensus 780 L~~L~Ls~n~~l~~-------lP~si~~L~~L~~L~Ls~C~~L~~-----LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~n 847 (1153)
T PLN03210 780 LTRLFLSDIPSLVE-------LPSSIQNLHKLEHLEIENCINLET-----LPTGINLESLESLDLSGCSRLRTFPDISTN 847 (1153)
T ss_pred chheeCCCCCCccc-------cChhhhCCCCCCEEECCCCCCcCe-----eCCCCCccccCEEECCCCCccccccccccc
Confidence 66666666532111 111123566677777776665542 222224666777777776666666555566
Q ss_pred ccEEecccccccccccc---ccccccEEeccccccccccccc---ccCCcEEEecCCCCcccccc
Q 004729 633 LVSLSLVGCRAITALEL---KCPILEKVCLDGCDHIESASFV---PVALQSLNLGICPKLSTLGI 691 (733)
Q Consensus 633 L~~L~L~~c~~L~~l~~---~~p~L~~L~L~~c~~L~~~~~~---~~~L~~L~L~~c~~L~~l~~ 691 (733)
|+.|++++ ..++.++. .+++|+.|+|.+|+.|+.+... ...|+.+++++|++|+.++.
T Consensus 848 L~~L~Ls~-n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~l 911 (1153)
T PLN03210 848 ISDLNLSR-TGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEASW 911 (1153)
T ss_pred cCEeECCC-CCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccccC
Confidence 66666666 34555542 4566666666666666654332 22455666666666665544
|
syringae 6; Provisional |
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.5e-19 Score=188.60 Aligned_cols=320 Identities=16% Similarity=0.211 Sum_probs=168.6
Q ss_pred cEEEEcCCCchhHHHHHHhhcCCCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEEeec
Q 004729 290 TEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITK 369 (733)
Q Consensus 290 ~~L~L~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~ 369 (733)
+.|++++ +.+..+....|..+++|+++.+.+|.++ ..|.......+|+.|+|.+|.+...-.+-...++.|+.|+|+.
T Consensus 81 ~~Ldlsn-Nkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSr 158 (873)
T KOG4194|consen 81 QTLDLSN-NKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSR 158 (873)
T ss_pred eeeeccc-cccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhh
Confidence 4455555 4444555555566666666666666555 3343333455566666666665554444455566666666666
Q ss_pred cccchhccc----CCCCcEEEEcCCchHHH----hhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCCCCCCh
Q 004729 370 CRVMRVSIR----CPQLEHLSLKRSNMAQA----VLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSD 441 (733)
Q Consensus 370 ~~~~~i~~~----~~~L~~L~L~~~~l~~~----~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~ 441 (733)
|.+..++.. -+++++|+|++|.+..+ +.++.+|..|.|+. +.++... ...++++++|+.|+|..+. +..
T Consensus 159 N~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsr-NrittLp-~r~Fk~L~~L~~LdLnrN~-iri 235 (873)
T KOG4194|consen 159 NLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSR-NRITTLP-QRSFKRLPKLESLDLNRNR-IRI 235 (873)
T ss_pred chhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeeccc-CcccccC-HHHhhhcchhhhhhccccc-eee
Confidence 665544422 24567777776666543 45556677777776 4455443 2345567777777776655 221
Q ss_pred hHHHHHHHhcccccccccccCC--CCCcCC-CCCCCccEEEeCCCCCCchHHHHHhhCCCCcCEEEEecCCCCcccccC-
Q 004729 442 ESLREIALSCANLRILNSSYCP--NISLES-VRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLE- 517 (733)
Q Consensus 442 ~~l~~l~~~~~~L~~L~L~~~~--~l~~~~-~~l~~L~~L~L~~c~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~- 517 (733)
... ..++.+++|+.|.+..+. .+.+.. ..+.++++|+|.. +.+....-..+-.++.|+.|++++|. +..+...
T Consensus 236 ve~-ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~-N~l~~vn~g~lfgLt~L~~L~lS~Na-I~rih~d~ 312 (873)
T KOG4194|consen 236 VEG-LTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLET-NRLQAVNEGWLFGLTSLEQLDLSYNA-IQRIHIDS 312 (873)
T ss_pred ehh-hhhcCchhhhhhhhhhcCcccccCcceeeecccceeeccc-chhhhhhcccccccchhhhhccchhh-hheeecch
Confidence 111 112356666666666554 222222 2566777777766 55555544455566777777777663 2222211
Q ss_pred ---CCCCcEEEeccccCCcccccccccccee---ecccCcCCceeeeccCccccccccccccHHHHHhcCCCCcEEeecC
Q 004729 518 ---LPRLQNIRLVHCRKFADLNLRAMMLSSI---MVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTD 591 (733)
Q Consensus 518 ---l~~L~~L~L~~c~~l~~l~l~~~~L~~l---~l~~c~~L~~L~l~~n~L~~l~~~~~~~L~~l~~~~~~L~~L~Ls~ 591 (733)
.++|+.|++ +++.+..+ .+..+..|+.|.++.|+++.+.-.... .+.+|++|+|++
T Consensus 313 WsftqkL~~LdL-----------s~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~-------~lssL~~LdLr~ 374 (873)
T KOG4194|consen 313 WSFTQKLKELDL-----------SSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFV-------GLSSLHKLDLRS 374 (873)
T ss_pred hhhcccceeEec-----------cccccccCChhHHHHHHHhhhhcccccchHHHHhhHHH-------HhhhhhhhcCcC
Confidence 234444433 33332222 234445566666666666554322222 233666666655
Q ss_pred CCCCChhh---hhhhcCCCCCCCccEEEeecCCCCccccc----cCCCccEEeccc
Q 004729 592 CESLTNSV---CEVFSDGGGCPMLKSLVLDNCEGLTVVRF----CSTSLVSLSLVG 640 (733)
Q Consensus 592 C~~lt~~~---~~~~~~~~~l~~L~~L~L~~c~~L~~~~~----~~~sL~~L~L~~ 640 (733)
+.+.-.+ ...| .++++|+.|.+.++ +++.++. .+.+|++|+|.+
T Consensus 375 -N~ls~~IEDaa~~f---~gl~~LrkL~l~gN-qlk~I~krAfsgl~~LE~LdL~~ 425 (873)
T KOG4194|consen 375 -NELSWCIEDAAVAF---NGLPSLRKLRLTGN-QLKSIPKRAFSGLEALEHLDLGD 425 (873)
T ss_pred -CeEEEEEecchhhh---ccchhhhheeecCc-eeeecchhhhccCcccceecCCC
Confidence 3332111 1122 34666666666664 4555543 456666666655
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.7e-17 Score=200.63 Aligned_cols=126 Identities=23% Similarity=0.348 Sum_probs=75.9
Q ss_pred CCCCcEEeecCCCCCChhhhhhhcCCCCCCCccEEEeecCCCCccccc--cCCCccEEeccccccccccccccccccEEe
Q 004729 581 CQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRF--CSTSLVSLSLVGCRAITALELKCPILEKVC 658 (733)
Q Consensus 581 ~~~L~~L~Ls~C~~lt~~~~~~~~~~~~l~~L~~L~L~~c~~L~~~~~--~~~sL~~L~L~~c~~L~~l~~~~p~L~~L~ 658 (733)
+++|+.|++++|+.+.... .. .+.+++|+.|+|++|..++.++. .+++|+.|++++|..+..++...++|++|+
T Consensus 777 ~~sL~~L~Ls~n~~l~~lP-~s---i~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~ 852 (1153)
T PLN03210 777 SPSLTRLFLSDIPSLVELP-SS---IQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLN 852 (1153)
T ss_pred cccchheeCCCCCCccccC-hh---hhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccccccccCEeE
Confidence 4567777777765444321 12 24567777777777766666654 456677777777776666665556677777
Q ss_pred cccccccccccc---cccCCcEEEecCCCCccccccCcc---cccEEEecCCCCCCccC
Q 004729 659 LDGCDHIESASF---VPVALQSLNLGICPKLSTLGIEAL---HMVVLELKGCGVLSDAY 711 (733)
Q Consensus 659 L~~c~~L~~~~~---~~~~L~~L~L~~c~~L~~l~~~~~---~L~~L~l~~c~~L~~~~ 711 (733)
|++ ..++.+.. ...+|+.|++++|++|+.++.... .|+.|.+++|+.|+.+.
T Consensus 853 Ls~-n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 853 LSR-TGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEAS 910 (1153)
T ss_pred CCC-CCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCccccccc
Confidence 766 34443221 123667777777777777665332 35566777777665443
|
syringae 6; Provisional |
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.3e-16 Score=168.18 Aligned_cols=237 Identities=22% Similarity=0.277 Sum_probs=164.0
Q ss_pred CCeeEEeeCCCCCCHHHHHHHHhhCCCccEEEEcCCCchhHHHHHHhhcCCCCCEEEecCccCChHHHHhccCCCCCcEE
Q 004729 262 DFWRCLNFENRKISVEQFEDVCQRYPNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSL 341 (733)
Q Consensus 262 ~lw~~l~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L 341 (733)
.+.+-++|+...++...|..-.+...+++.|.+.. ..+. .++..++.+.+|++|.+.+|++. .....++.+|.|+.+
T Consensus 7 pFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnr-t~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv 83 (1255)
T KOG0444|consen 7 PFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNR-TKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSV 83 (1255)
T ss_pred ceeecccccCCcCCCCcCchhHHHhhheeEEEech-hhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHH
Confidence 35667788777777666666666677888888876 2232 35677899999999999999887 567778899999999
Q ss_pred EEecCcCC-cccccccccCCCccEEEeeccccchhcc---cCCCCcEEEEcCCchHH----HhhCCCCccEEEEecCCCC
Q 004729 342 NVNDATLG-NGVQEIPINHDQLRRLEITKCRVMRVSI---RCPQLEHLSLKRSNMAQ----AVLNCPLLHLLDIASCHKL 413 (733)
Q Consensus 342 ~L~~~~l~-~~~~~~~~~~~~L~~L~L~~~~~~~i~~---~~~~L~~L~L~~~~l~~----~~~~~~~L~~L~L~~c~~l 413 (733)
.+..|.+. .+++.-+..+..|+.|+|++|.+...+. ...++..|+|++|++.. ++.++.-|-.|+|+. +.+
T Consensus 84 ~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~-NrL 162 (1255)
T KOG0444|consen 84 IVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSN-NRL 162 (1255)
T ss_pred hhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhcccc-chh
Confidence 99988864 4566666788999999999998877664 45678889999988764 355667777788877 344
Q ss_pred ChHHHHHHHhcCCCCcEEeccCCCCCChhHHHHHHHhcccccccccccCC----CCCcCCCCCCCccEEEeCCCCCCchH
Q 004729 414 SDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCP----NISLESVRLPMLTVLQLHSCEGITSA 489 (733)
Q Consensus 414 ~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~----~l~~~~~~l~~L~~L~L~~c~~l~~~ 489 (733)
.. ++.-...+..|+.|++++++ +....+..+. .++.|+.|++++.. +++...-.+.+|+.++++. +.+. .
T Consensus 163 e~--LPPQ~RRL~~LqtL~Ls~NP-L~hfQLrQLP-smtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~-N~Lp-~ 236 (1255)
T KOG0444|consen 163 EM--LPPQIRRLSMLQTLKLSNNP-LNHFQLRQLP-SMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSE-NNLP-I 236 (1255)
T ss_pred hh--cCHHHHHHhhhhhhhcCCCh-hhHHHHhcCc-cchhhhhhhcccccchhhcCCCchhhhhhhhhccccc-cCCC-c
Confidence 32 33344566778888888877 4444444332 45566666666654 3333444566677777765 3333 2
Q ss_pred HHHHhhCCCCcCEEEEecC
Q 004729 490 SMAAISHSYMLEVLELDNC 508 (733)
Q Consensus 490 ~~~~l~~~~~L~~L~L~~~ 508 (733)
.++.+-++++|+.|+|++|
T Consensus 237 vPecly~l~~LrrLNLS~N 255 (1255)
T KOG0444|consen 237 VPECLYKLRNLRRLNLSGN 255 (1255)
T ss_pred chHHHhhhhhhheeccCcC
Confidence 3345556667777777766
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.1e-16 Score=167.21 Aligned_cols=340 Identities=19% Similarity=0.231 Sum_probs=178.2
Q ss_pred HHhhcCCCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEEeeccccchhcccCCCCcEE
Q 004729 306 KAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIRCPQLEHL 385 (733)
Q Consensus 306 ~~l~~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~i~~~~~~L~~L 385 (733)
..+..+..++.|.|....+. ..|..++.|.+|++|.+.+|.+.....+ ...++.|+.+.+..|.+..
T Consensus 26 ~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~vhGE-Ls~Lp~LRsv~~R~N~LKn----------- 92 (1255)
T KOG0444|consen 26 HDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLISVHGE-LSDLPRLRSVIVRDNNLKN----------- 92 (1255)
T ss_pred hhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHhhhhh-hccchhhHHHhhhcccccc-----------
Confidence 33444455555555555444 3455555555555555555554432222 2244555555555444321
Q ss_pred EEcCCchHHHhhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCCCCCChhHHHHHHHhcccccccccccCC--
Q 004729 386 SLKRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCP-- 463 (733)
Q Consensus 386 ~L~~~~l~~~~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~-- 463 (733)
.++..-+-.+..|..|+|+. +++.. .+.-+....++-.|+++++. | +.....++.+++.|-.|+|+++.
T Consensus 93 ----sGiP~diF~l~dLt~lDLSh-NqL~E--vP~~LE~AKn~iVLNLS~N~-I-etIPn~lfinLtDLLfLDLS~NrLe 163 (1255)
T KOG0444|consen 93 ----SGIPTDIFRLKDLTILDLSH-NQLRE--VPTNLEYAKNSIVLNLSYNN-I-ETIPNSLFINLTDLLFLDLSNNRLE 163 (1255)
T ss_pred ----CCCCchhcccccceeeecch-hhhhh--cchhhhhhcCcEEEEcccCc-c-ccCCchHHHhhHhHhhhccccchhh
Confidence 12222222344444444444 22222 12223333455555555544 1 11122233344455555555443
Q ss_pred CCCcCCCCCCCccEEEeCCCCCCchHHHHHhhCCCCcCEEEEecCCC-CcccccCCCCCcEEEeccccCCcccccccccc
Q 004729 464 NISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNL-LTSVSLELPRLQNIRLVHCRKFADLNLRAMML 542 (733)
Q Consensus 464 ~l~~~~~~l~~L~~L~L~~c~~l~~~~~~~l~~~~~L~~L~L~~~~~-l~~~~~~l~~L~~L~L~~c~~l~~l~l~~~~L 542 (733)
.++...-++.+|++|+|++ +.+....+..+..+++|+.|++++... +..+|..+ ....++.++.++.+.+
T Consensus 164 ~LPPQ~RRL~~LqtL~Ls~-NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsl--------d~l~NL~dvDlS~N~L 234 (1255)
T KOG0444|consen 164 MLPPQIRRLSMLQTLKLSN-NPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSL--------DDLHNLRDVDLSENNL 234 (1255)
T ss_pred hcCHHHHHHhhhhhhhcCC-ChhhHHHHhcCccchhhhhhhcccccchhhcCCCch--------hhhhhhhhccccccCC
Confidence 2222333455666666665 334444444555566666666665322 22333221 1222344455555544
Q ss_pred cee--ecccCcCCceeeeccCccccccccccccHHHHHhcCCCCcEEeecCCCCCChhhhhhhcCCCCCCCccEEEeecC
Q 004729 543 SSI--MVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNC 620 (733)
Q Consensus 543 ~~l--~l~~c~~L~~L~l~~n~L~~l~~~~~~~L~~l~~~~~~L~~L~Ls~C~~lt~~~~~~~~~~~~l~~L~~L~L~~c 620 (733)
..+ .+.+.++|+.|++++|.|+++..... .-.+|+.|+++. ++++...- .+..+++|+.|.+.++
T Consensus 235 p~vPecly~l~~LrrLNLS~N~iteL~~~~~--------~W~~lEtLNlSr-NQLt~LP~----avcKL~kL~kLy~n~N 301 (1255)
T KOG0444|consen 235 PIVPECLYKLRNLRRLNLSGNKITELNMTEG--------EWENLETLNLSR-NQLTVLPD----AVCKLTKLTKLYANNN 301 (1255)
T ss_pred CcchHHHhhhhhhheeccCcCceeeeeccHH--------HHhhhhhhcccc-chhccchH----HHhhhHHHHHHHhccC
Confidence 444 46677888888888888887754321 124788888888 67764321 2245778888877554
Q ss_pred CCCccccc-----cCCCccEEecccccccccccc---ccccccEEeccccccccc-ccc-cccCCcEEEecCCCCccccc
Q 004729 621 EGLTVVRF-----CSTSLVSLSLVGCRAITALEL---KCPILEKVCLDGCDHIES-ASF-VPVALQSLNLGICPKLSTLG 690 (733)
Q Consensus 621 ~~L~~~~~-----~~~sL~~L~L~~c~~L~~l~~---~~p~L~~L~L~~c~~L~~-~~~-~~~~L~~L~L~~c~~L~~l~ 690 (733)
+++.-++ .+..|+.+...+ ++|+-++. .|+.|+.|.|++..-++- .++ ..+.|+.|++...|+|..-|
T Consensus 302 -kL~FeGiPSGIGKL~~Levf~aan-N~LElVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 302 -KLTFEGIPSGIGKLIQLEVFHAAN-NKLELVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred -cccccCCccchhhhhhhHHHHhhc-cccccCchhhhhhHHHHHhcccccceeechhhhhhcCCcceeeccCCcCccCCC
Confidence 3443322 455666666665 55665553 688999999988554443 222 34589999999999887655
Q ss_pred c
Q 004729 691 I 691 (733)
Q Consensus 691 ~ 691 (733)
.
T Consensus 380 K 380 (1255)
T KOG0444|consen 380 K 380 (1255)
T ss_pred C
Confidence 3
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.8e-15 Score=169.11 Aligned_cols=213 Identities=23% Similarity=0.260 Sum_probs=132.0
Q ss_pred CCccEEEeCCCCCCchHHHHHhhCCCCcCEEEEecCCCCcccccC---CCCCcEEEeccccCCcccccccccccee--ec
Q 004729 473 PMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLE---LPRLQNIRLVHCRKFADLNLRAMMLSSI--MV 547 (733)
Q Consensus 473 ~~L~~L~L~~c~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~---l~~L~~L~L~~c~~l~~l~l~~~~L~~l--~l 547 (733)
.+|++++++. +++.... ..++.+.+|+.|.+.+|. ++.+|.. ..+|+.|.+.+ +.++++ .+
T Consensus 241 ~nl~~~dis~-n~l~~lp-~wi~~~~nle~l~~n~N~-l~~lp~ri~~~~~L~~l~~~~-----------nel~yip~~l 306 (1081)
T KOG0618|consen 241 LNLQYLDISH-NNLSNLP-EWIGACANLEALNANHNR-LVALPLRISRITSLVSLSAAY-----------NELEYIPPFL 306 (1081)
T ss_pred ccceeeecch-hhhhcch-HHHHhcccceEecccchh-HHhhHHHHhhhhhHHHHHhhh-----------hhhhhCCCcc
Confidence 4677777776 4444444 667777777777777664 3554443 23333333322 222222 24
Q ss_pred ccCcCCceeeeccCcccccccccccc----HHHHH--------------hcCCCCcEEeecCCCCCChhhhhhhcCCCCC
Q 004729 548 SNCAALHRINITSNSLQKLSLQKQEN----LTSLA--------------LQCQCLQEVDLTDCESLTNSVCEVFSDGGGC 609 (733)
Q Consensus 548 ~~c~~L~~L~l~~n~L~~l~~~~~~~----L~~l~--------------~~~~~L~~L~Ls~C~~lt~~~~~~~~~~~~l 609 (733)
.....|+.|++..|.|..+....... +..+- ...+.|+.|.+.+ +.++|.....+ .++
T Consensus 307 e~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~Lylan-N~Ltd~c~p~l---~~~ 382 (1081)
T KOG0618|consen 307 EGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLAN-NHLTDSCFPVL---VNF 382 (1081)
T ss_pred cccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhc-Ccccccchhhh---ccc
Confidence 44566777777777766553211100 11110 1246788888888 78998765444 688
Q ss_pred CCccEEEeecCCCCccccc----cCCCccEEecccccccccccc---ccccccEEeccccccccccc--ccccCCcEEEe
Q 004729 610 PMLKSLVLDNCEGLTVVRF----CSTSLVSLSLVGCRAITALEL---KCPILEKVCLDGCDHIESAS--FVPVALQSLNL 680 (733)
Q Consensus 610 ~~L~~L~L~~c~~L~~~~~----~~~sL~~L~L~~c~~L~~l~~---~~p~L~~L~L~~c~~L~~~~--~~~~~L~~L~L 680 (733)
++||.|+|+++ .|+.++. .+..|++|+++| ++|+.++. .|+.|++|...+ +.|..+. ...++|+.+|+
T Consensus 383 ~hLKVLhLsyN-rL~~fpas~~~kle~LeeL~LSG-NkL~~Lp~tva~~~~L~tL~ahs-N~l~~fPe~~~l~qL~~lDl 459 (1081)
T KOG0618|consen 383 KHLKVLHLSYN-RLNSFPASKLRKLEELEELNLSG-NKLTTLPDTVANLGRLHTLRAHS-NQLLSFPELAQLPQLKVLDL 459 (1081)
T ss_pred cceeeeeeccc-ccccCCHHHHhchHHhHHHhccc-chhhhhhHHHHhhhhhHHHhhcC-CceeechhhhhcCcceEEec
Confidence 99999999997 5777764 678899999999 77888774 677888877665 3343322 12347888888
Q ss_pred cCCCCccccccC----cccccEEEecCCCCC
Q 004729 681 GICPKLSTLGIE----ALHMVVLELKGCGVL 707 (733)
Q Consensus 681 ~~c~~L~~l~~~----~~~L~~L~l~~c~~L 707 (733)
+ |.+|+.+.+. .++|++|+++|+..+
T Consensus 460 S-~N~L~~~~l~~~~p~p~LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 460 S-CNNLSEVTLPEALPSPNLKYLDLSGNTRL 489 (1081)
T ss_pred c-cchhhhhhhhhhCCCcccceeeccCCccc
Confidence 6 4467765432 246888888888763
|
|
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.5e-11 Score=131.36 Aligned_cols=208 Identities=20% Similarity=0.265 Sum_probs=94.4
Q ss_pred eCCCCCCHHHHHHHHhhCCCccEEEEcCCCchh---HHHHHHhhcCCCCCEEEecCccCC------hHHHHhccCCCCCc
Q 004729 269 FENRKISVEQFEDVCQRYPNATEVNIYGAPAIH---LLVMKAVSLLRNLEALTLGRGQLG------DAFFHALADCSMLK 339 (733)
Q Consensus 269 l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~---~~~~~~l~~l~~L~~L~Ls~~~i~------~~~~~~L~~~~~L~ 339 (733)
|....+....+..++....+++.+++.++.-.. ..+...+...+++++|+++++.+. ......+..+++|+
T Consensus 5 L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~ 84 (319)
T cd00116 5 LKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQ 84 (319)
T ss_pred cccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCcee
Confidence 333333333444444555556667766643211 112233445566666666665554 12233444566666
Q ss_pred EEEEecCcCCcccccccccC---CCccEEEeeccccchhcccCCCCcEEEEcCCchHHHhhCC-CCccEEEEecCCCCCh
Q 004729 340 SLNVNDATLGNGVQEIPINH---DQLRRLEITKCRVMRVSIRCPQLEHLSLKRSNMAQAVLNC-PLLHLLDIASCHKLSD 415 (733)
Q Consensus 340 ~L~L~~~~l~~~~~~~~~~~---~~L~~L~L~~~~~~~i~~~~~~L~~L~L~~~~l~~~~~~~-~~L~~L~L~~c~~l~~ 415 (733)
.|+++++.+..........+ ++|++|++++|.+.... ...+...+..+ ++|+.|++++|. ++.
T Consensus 85 ~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~------------~~~l~~~l~~~~~~L~~L~L~~n~-l~~ 151 (319)
T cd00116 85 ELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRG------------LRLLAKGLKDLPPALEKLVLGRNR-LEG 151 (319)
T ss_pred EEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHH------------HHHHHHHHHhCCCCceEEEcCCCc-CCc
Confidence 66666665543222211111 22444444444321000 00011123334 666666666653 442
Q ss_pred H---HHHHHHhcCCCCcEEeccCCCCCChhHHHHHHHhcccccccccccCCCCCcCCCCCCCccEEEeCCCCCCchHHHH
Q 004729 416 A---AIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNISLESVRLPMLTVLQLHSCEGITSASMA 492 (733)
Q Consensus 416 ~---~l~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~~~l~~L~~L~L~~c~~l~~~~~~ 492 (733)
. .+...+..+++|+.|+++++. +++..+..+...++ .+++|++|++++| .+++....
T Consensus 152 ~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~l~~~l~------------------~~~~L~~L~L~~n-~i~~~~~~ 211 (319)
T cd00116 152 ASCEALAKALRANRDLKELNLANNG-IGDAGIRALAEGLK------------------ANCNLEVLDLNNN-GLTDEGAS 211 (319)
T ss_pred hHHHHHHHHHHhCCCcCEEECcCCC-CchHHHHHHHHHHH------------------hCCCCCEEeccCC-ccChHHHH
Confidence 2 223334455667777776665 55544444433222 1234555555543 23333222
Q ss_pred ----HhhCCCCcCEEEEecCC
Q 004729 493 ----AISHSYMLEVLELDNCN 509 (733)
Q Consensus 493 ----~l~~~~~L~~L~L~~~~ 509 (733)
.+..+++|++|++++|.
T Consensus 212 ~l~~~~~~~~~L~~L~ls~n~ 232 (319)
T cd00116 212 ALAETLASLKSLEVLNLGDNN 232 (319)
T ss_pred HHHHHhcccCCCCEEecCCCc
Confidence 23345666666666653
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.27 E-value=1e-13 Score=155.14 Aligned_cols=122 Identities=18% Similarity=0.210 Sum_probs=70.4
Q ss_pred CcCCceeeeccCccccccccccccHHHHHhcCCCCcEEeecCCCCCChhhhhhhcCCCCCCCccEEEeecCCCCccccc-
Q 004729 550 CAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRF- 628 (733)
Q Consensus 550 c~~L~~L~l~~n~L~~l~~~~~~~L~~l~~~~~~L~~L~Ls~C~~lt~~~~~~~~~~~~l~~L~~L~L~~c~~L~~~~~- 628 (733)
.+.|+.|.+.+|.|+.- ...+..++++|+.|+|++ +.+....-..+ ..++.|++|+|+|+ +++.++.
T Consensus 358 ~~~Lq~LylanN~Ltd~-------c~p~l~~~~hLKVLhLsy-NrL~~fpas~~---~kle~LeeL~LSGN-kL~~Lp~t 425 (1081)
T KOG0618|consen 358 HAALQELYLANNHLTDS-------CFPVLVNFKHLKVLHLSY-NRLNSFPASKL---RKLEELEELNLSGN-KLTTLPDT 425 (1081)
T ss_pred hHHHHHHHHhcCccccc-------chhhhccccceeeeeecc-cccccCCHHHH---hchHHhHHHhcccc-hhhhhhHH
Confidence 34566667777776532 122334667777777777 55553322222 45667777777775 4666554
Q ss_pred --cCCCccEEecccccccccccc--ccccccEEecccccccccccc---cc-cCCcEEEecCCCC
Q 004729 629 --CSTSLVSLSLVGCRAITALEL--KCPILEKVCLDGCDHIESASF---VP-VALQSLNLGICPK 685 (733)
Q Consensus 629 --~~~sL~~L~L~~c~~L~~l~~--~~p~L~~L~L~~c~~L~~~~~---~~-~~L~~L~L~~c~~ 685 (733)
.+..|+.|...+ +.|..++. .+|.|+.++|+. ++|+.... .| ++|++|++++.++
T Consensus 426 va~~~~L~tL~ahs-N~l~~fPe~~~l~qL~~lDlS~-N~L~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 426 VANLGRLHTLRAHS-NQLLSFPELAQLPQLKVLDLSC-NNLSEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred HHhhhhhHHHhhcC-CceeechhhhhcCcceEEeccc-chhhhhhhhhhCCCcccceeeccCCcc
Confidence 455566555544 34444442 566777777765 55555322 34 5777777776654
|
|
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.9e-10 Score=122.71 Aligned_cols=242 Identities=18% Similarity=0.185 Sum_probs=139.1
Q ss_pred eeEEeeCCCCCCHHH---HHHHHhhCCCccEEEEcCCCch-----hHHHHHHhhcCCCCCEEEecCccCChHHHHhccCC
Q 004729 264 WRCLNFENRKISVEQ---FEDVCQRYPNATEVNIYGAPAI-----HLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADC 335 (733)
Q Consensus 264 w~~l~l~~~~~~~~~---l~~~~~~~~~L~~L~L~~~~~~-----~~~~~~~l~~l~~L~~L~Ls~~~i~~~~~~~L~~~ 335 (733)
.+.+++....+.... +...+...++++.+++.+.... .......+..+++|+.|+++++.+.......+..+
T Consensus 25 L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l 104 (319)
T cd00116 25 LQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESL 104 (319)
T ss_pred ccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHH
Confidence 456667666665443 3445556677888888764322 12234456678899999999888865444444433
Q ss_pred ---CCCcEEEEecCcCCcc----cccccccC-CCccEEEeeccccc-----h---hcccCCCCcEEEEcCCchH-----H
Q 004729 336 ---SMLKSLNVNDATLGNG----VQEIPINH-DQLRRLEITKCRVM-----R---VSIRCPQLEHLSLKRSNMA-----Q 394 (733)
Q Consensus 336 ---~~L~~L~L~~~~l~~~----~~~~~~~~-~~L~~L~L~~~~~~-----~---i~~~~~~L~~L~L~~~~l~-----~ 394 (733)
++|++|++++|.+.+. +......+ ++|++|++.+|.+. . ....+++|++|+++++.+. .
T Consensus 105 ~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 184 (319)
T cd00116 105 LRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRA 184 (319)
T ss_pred hccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHH
Confidence 4599999998877632 12223345 78888888888754 1 1234556777777766544 1
Q ss_pred ---HhhCCCCccEEEEecCCCCChHHH---HHHHhcCCCCcEEeccCCCCCChhHHHHHHHhc----ccccccccccCCC
Q 004729 395 ---AVLNCPLLHLLDIASCHKLSDAAI---RLAATSCPQLESLDMSNCSCVSDESLREIALSC----ANLRILNSSYCPN 464 (733)
Q Consensus 395 ---~~~~~~~L~~L~L~~c~~l~~~~l---~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~----~~L~~L~L~~~~~ 464 (733)
.+..+++|++|++++| .+.+... ...+..+++|+.|++++|. +++..+..+...+ ++|++|++.+|..
T Consensus 185 l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~~~~~~~L~~L~ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i 262 (319)
T cd00116 185 LAEGLKANCNLEVLDLNNN-GLTDEGASALAETLASLKSLEVLNLGDNN-LTDAGAAALASALLSPNISLLTLSLSCNDI 262 (319)
T ss_pred HHHHHHhCCCCCEEeccCC-ccChHHHHHHHHHhcccCCCCEEecCCCc-CchHHHHHHHHHHhccCCCceEEEccCCCC
Confidence 1334457777777775 3544432 3344456777777777765 6666666655443 4666666665542
Q ss_pred CC-------cCCCCCCCccEEEeCCCCCCchHHHHHhh----CC-CCcCEEEEecC
Q 004729 465 IS-------LESVRLPMLTVLQLHSCEGITSASMAAIS----HS-YMLEVLELDNC 508 (733)
Q Consensus 465 l~-------~~~~~l~~L~~L~L~~c~~l~~~~~~~l~----~~-~~L~~L~L~~~ 508 (733)
.. .....+++|+++++++ +.+++.+...+. .. +.|++|++.++
T Consensus 263 ~~~~~~~l~~~~~~~~~L~~l~l~~-N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (319)
T cd00116 263 TDDGAKDLAEVLAEKESLLELDLRG-NKFGEEGAQLLAESLLEPGNELESLWVKDD 317 (319)
T ss_pred CcHHHHHHHHHHhcCCCccEEECCC-CCCcHHHHHHHHHHHhhcCCchhhcccCCC
Confidence 10 0111335566666665 345444332222 12 45555555443
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.8e-10 Score=133.14 Aligned_cols=253 Identities=16% Similarity=0.116 Sum_probs=162.6
Q ss_pred CCCcEEeccCCCCCChhHHHHHHHhcccccccccccCCCCCcCCCCCCCccEEEeCCCCCCchHHHHHhhCCCCcCEEEE
Q 004729 426 PQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLEL 505 (733)
Q Consensus 426 ~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~~~l~~L~~L~L~~c~~l~~~~~~~l~~~~~L~~L~L 505 (733)
..-..|+++.+. ++. ++... .++|+.|.+.++... ......++|++|++++ +.++... ...++|++|++
T Consensus 201 ~~~~~LdLs~~~-Lts--LP~~l--~~~L~~L~L~~N~Lt-~LP~lp~~Lk~LdLs~-N~LtsLP----~lp~sL~~L~L 269 (788)
T PRK15387 201 NGNAVLNVGESG-LTT--LPDCL--PAHITTLVIPDNNLT-SLPALPPELRTLEVSG-NQLTSLP----VLPPGLLELSI 269 (788)
T ss_pred CCCcEEEcCCCC-CCc--CCcch--hcCCCEEEccCCcCC-CCCCCCCCCcEEEecC-CccCccc----Ccccccceeec
Confidence 456778888875 442 22211 147888888876522 2223467899999988 4565432 12467888888
Q ss_pred ecCCCCcccccCCCCCcEEEeccccCCccccccccccceeecccCcCCceeeeccCccccccccccccHHHHHhcCCCCc
Q 004729 506 DNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQ 585 (733)
Q Consensus 506 ~~~~~l~~~~~~l~~L~~L~L~~c~~l~~l~l~~~~L~~l~l~~c~~L~~L~l~~n~L~~l~~~~~~~L~~l~~~~~~L~ 585 (733)
.+|. +..++..+++|+.|.+.++ .++.+. ...++|+.|++++|.|+.+.. ...+|+
T Consensus 270 s~N~-L~~Lp~lp~~L~~L~Ls~N-~Lt~LP-----------~~p~~L~~LdLS~N~L~~Lp~-----------lp~~L~ 325 (788)
T PRK15387 270 FSNP-LTHLPALPSGLCKLWIFGN-QLTSLP-----------VLPPGLQELSVSDNQLASLPA-----------LPSELC 325 (788)
T ss_pred cCCc-hhhhhhchhhcCEEECcCC-cccccc-----------ccccccceeECCCCccccCCC-----------Cccccc
Confidence 8874 6666665567777776554 233221 123678889998888876531 123677
Q ss_pred EEeecCCCCCChhhhhhhcCCCCCCCccEEEeecCCCCccccccCCCccEEeccccccccccccccccccEEeccccccc
Q 004729 586 EVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRFCSTSLVSLSLVGCRAITALELKCPILEKVCLDGCDHI 665 (733)
Q Consensus 586 ~L~Ls~C~~lt~~~~~~~~~~~~l~~L~~L~L~~c~~L~~~~~~~~sL~~L~L~~c~~L~~l~~~~p~L~~L~L~~c~~L 665 (733)
.|++++| .++. ++ ...++|+.|+|+++ .++.++....+|+.|++++ +.|..++...++|+.|+|++ +.+
T Consensus 326 ~L~Ls~N-~L~~-----LP--~lp~~Lq~LdLS~N-~Ls~LP~lp~~L~~L~Ls~-N~L~~LP~l~~~L~~LdLs~-N~L 394 (788)
T PRK15387 326 KLWAYNN-QLTS-----LP--TLPSGLQELSVSDN-QLASLPTLPSELYKLWAYN-NRLTSLPALPSGLKELIVSG-NRL 394 (788)
T ss_pred ccccccC-cccc-----cc--ccccccceEecCCC-ccCCCCCCCcccceehhhc-cccccCcccccccceEEecC-Ccc
Confidence 7888773 5542 22 11347888888775 5777766677888888776 45666665556788888887 456
Q ss_pred ccccccccCCcEEEecCCCCccccccCcccccEEEecCCCCCCccC---CCCCCccEEeccCcc
Q 004729 666 ESASFVPVALQSLNLGICPKLSTLGIEALHMVVLELKGCGVLSDAY---INCPLLTSLDASFCR 726 (733)
Q Consensus 666 ~~~~~~~~~L~~L~L~~c~~L~~l~~~~~~L~~L~l~~c~~L~~~~---~~~p~L~~L~l~~C~ 726 (733)
+.+...+.+|+.|+++++. |+.+|.....|+.|+++++. |+.+. .++++|+.|++++++
T Consensus 395 t~LP~l~s~L~~LdLS~N~-LssIP~l~~~L~~L~Ls~Nq-Lt~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 395 TSLPVLPSELKELMVSGNR-LTSLPMLPSGLLSLSVYRNQ-LTRLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred cCCCCcccCCCEEEccCCc-CCCCCcchhhhhhhhhccCc-ccccChHHhhccCCCeEECCCCC
Confidence 6555556678888888874 77777544467777777744 33332 367788888887764
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.1e-10 Score=134.85 Aligned_cols=89 Identities=16% Similarity=0.148 Sum_probs=48.1
Q ss_pred CCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEEeeccccchhcccCCCCcEEEEcCCch
Q 004729 313 NLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIRCPQLEHLSLKRSNM 392 (733)
Q Consensus 313 ~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~i~~~~~~L~~L~L~~~~l 392 (733)
+|+.|.+++|.++. ++. ..++|++|++++|.+.. ++ ...++|+.|++.+|.+..++...++|+.|++.+|.+
T Consensus 223 ~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lts-LP---~lp~sL~~L~Ls~N~L~~Lp~lp~~L~~L~Ls~N~L 294 (788)
T PRK15387 223 HITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTS-LP---VLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQL 294 (788)
T ss_pred CCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccCc-cc---CcccccceeeccCCchhhhhhchhhcCEEECcCCcc
Confidence 56677776666652 221 24566666666665542 12 123556666666665555554445555566555555
Q ss_pred HHHhhCCCCccEEEEec
Q 004729 393 AQAVLNCPLLHLLDIAS 409 (733)
Q Consensus 393 ~~~~~~~~~L~~L~L~~ 409 (733)
..+....++|+.|++++
T Consensus 295 t~LP~~p~~L~~LdLS~ 311 (788)
T PRK15387 295 TSLPVLPPGLQELSVSD 311 (788)
T ss_pred ccccccccccceeECCC
Confidence 54433445555555555
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.8e-13 Score=140.00 Aligned_cols=227 Identities=19% Similarity=0.210 Sum_probs=139.3
Q ss_pred HHHhhCCCccEEEEcCCCchhHHHHHHhhcCCCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCC
Q 004729 281 DVCQRYPNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHD 360 (733)
Q Consensus 281 ~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~ 360 (733)
.-..+...++.+.+.... . ...+++++.+..++.++.+++.+. .++..+...++|+.|+++.+.+....+ -+..+-
T Consensus 62 ~dl~nL~~l~vl~~~~n~-l-~~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~el~~-~i~~~~ 137 (565)
T KOG0472|consen 62 EDLKNLACLTVLNVHDNK-L-SQLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELKELPD-SIGRLL 137 (565)
T ss_pred HhhhcccceeEEEeccch-h-hhCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhccccceeecCc-hHHHHh
Confidence 334455667777776622 2 224566777777888888888777 567777888888888888887653333 334566
Q ss_pred CccEEEeeccccchhcc---cCCCCcEEEEcCCchHHH---hhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEecc
Q 004729 361 QLRRLEITKCRVMRVSI---RCPQLEHLSLKRSNMAQA---VLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMS 434 (733)
Q Consensus 361 ~L~~L~L~~~~~~~i~~---~~~~L~~L~L~~~~l~~~---~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~ 434 (733)
.|+.|+..+|.+...+. .+.+|..+.+.++.+.+. .-+++.|++|+... +.+ ..++.-++.+.+|+.|++.
T Consensus 138 ~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~-N~L--~tlP~~lg~l~~L~~LyL~ 214 (565)
T KOG0472|consen 138 DLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNS-NLL--ETLPPELGGLESLELLYLR 214 (565)
T ss_pred hhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccch-hhh--hcCChhhcchhhhHHHHhh
Confidence 77778877777766654 345566677777766543 22366677776544 112 2233344556667777777
Q ss_pred CCCCCChhHHHHHHHhcccccccccccCC--CCCcCCC-CCCCccEEEeCCCCCCchHHHHHhhCCCCcCEEEEecCCCC
Q 004729 435 NCSCVSDESLREIALSCANLRILNSSYCP--NISLESV-RLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLL 511 (733)
Q Consensus 435 ~~~~l~~~~l~~l~~~~~~L~~L~L~~~~--~l~~~~~-~l~~L~~L~L~~c~~l~~~~~~~l~~~~~L~~L~L~~~~~l 511 (733)
.+. +. .++++ ..|..|++|+++.+. .++.+.. .+++|..|++.. +.++... ..+..+.+|+.||++++ .+
T Consensus 215 ~Nk-i~--~lPef-~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRd-Nklke~P-de~clLrsL~rLDlSNN-~i 287 (565)
T KOG0472|consen 215 RNK-IR--FLPEF-PGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRD-NKLKEVP-DEICLLRSLERLDLSNN-DI 287 (565)
T ss_pred hcc-cc--cCCCC-CccHHHHHHHhcccHHHhhHHHHhcccccceeeeccc-cccccCc-hHHHHhhhhhhhcccCC-cc
Confidence 665 21 23322 367777777777654 2333333 577778888877 4454433 33455677888888876 46
Q ss_pred cccccCCCCC
Q 004729 512 TSVSLELPRL 521 (733)
Q Consensus 512 ~~~~~~l~~L 521 (733)
+.+|..+.+|
T Consensus 288 s~Lp~sLgnl 297 (565)
T KOG0472|consen 288 SSLPYSLGNL 297 (565)
T ss_pred ccCCcccccc
Confidence 6666655444
|
|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.06 E-value=8.5e-11 Score=132.90 Aligned_cols=38 Identities=24% Similarity=0.308 Sum_probs=25.3
Q ss_pred ccccCCCHHHHHHHHhcCChhhHHHHHHHHHHHHHhhc
Q 004729 222 EIRMDLTDDLLHMVFSFLDYVDLCRAAIVCRQWRAASA 259 (733)
Q Consensus 222 ~~~~~LP~ElL~~If~~L~~~dl~~~~lVck~W~~l~~ 259 (733)
......|++....++......+......++++|.....
T Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (482)
T KOG1947|consen 43 RFTLLLPDELLADLLLKLVVLDRESVSLVTRLWLTLLG 80 (482)
T ss_pred eeeeccccchhhhcccccccccccccchhhhhhhhhhh
Confidence 44455666777777777776666667777777766543
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.1e-12 Score=132.31 Aligned_cols=212 Identities=16% Similarity=0.182 Sum_probs=144.9
Q ss_pred hCCCccEEEEcCCCchhHHHHHHhhcCCCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccE
Q 004729 285 RYPNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRR 364 (733)
Q Consensus 285 ~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~ 364 (733)
+...++.++.+. +. -...++.+...++|..++++++.+. ..+..++.+..|..++..+|.+.... +-..++.+|..
T Consensus 89 ~l~~l~~l~vs~-n~-ls~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~slp-~~~~~~~~l~~ 164 (565)
T KOG0472|consen 89 ELEALKSLNVSH-NK-LSELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLEDLDATNNQISSLP-EDMVNLSKLSK 164 (565)
T ss_pred HHHHHHHhhccc-ch-HhhccHHHhhhhhhhhhhcccccee-ecCchHHHHhhhhhhhccccccccCc-hHHHHHHHHHH
Confidence 334455566555 22 2334567778888999999988776 45666778888898988888776433 34457778888
Q ss_pred EEeeccccchhcc---cCCCCcEEEEcCCchHHH---hhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCCCC
Q 004729 365 LEITKCRVMRVSI---RCPQLEHLSLKRSNMAQA---VLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSC 438 (733)
Q Consensus 365 L~L~~~~~~~i~~---~~~~L~~L~L~~~~l~~~---~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~~ 438 (733)
|++.++.....+. .+..|++|+...|.+..+ ++.+.+|..|++.. +++.. ++ -+..|..|++|++..+.
T Consensus 165 l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~-Nki~~--lP-ef~gcs~L~Elh~g~N~- 239 (565)
T KOG0472|consen 165 LDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRR-NKIRF--LP-EFPGCSLLKELHVGENQ- 239 (565)
T ss_pred hhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhh-ccccc--CC-CCCccHHHHHHHhcccH-
Confidence 8888888776553 377788888877765544 45556666666666 34433 22 35578888888888765
Q ss_pred CChhHHHHHHHhcccccccccccCC--CCCcCCCCCCCccEEEeCCCCCCchHHHHHhhCCCCcCEEEEecCC
Q 004729 439 VSDESLREIALSCANLRILNSSYCP--NISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCN 509 (733)
Q Consensus 439 l~~~~l~~l~~~~~~L~~L~L~~~~--~l~~~~~~l~~L~~L~L~~c~~l~~~~~~~l~~~~~L~~L~L~~~~ 509 (733)
+ ..-..+...++++|..|++.++. .++++...+.+|.+|++++ +.++... ..++++ +|+.|.+.+++
T Consensus 240 i-~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSN-N~is~Lp-~sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 240 I-EMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSN-NDISSLP-YSLGNL-HLKFLALEGNP 308 (565)
T ss_pred H-HhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccC-CccccCC-cccccc-eeeehhhcCCc
Confidence 2 12233445577888899998876 5667777888999999988 4455443 356777 78888888775
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.9e-10 Score=113.90 Aligned_cols=170 Identities=21% Similarity=0.361 Sum_probs=116.6
Q ss_pred CCccEEEeeccccc-----hhcccCCCCcEEEEcCCch----HHHhhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcE
Q 004729 360 DQLRRLEITKCRVM-----RVSIRCPQLEHLSLKRSNM----AQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLES 430 (733)
Q Consensus 360 ~~L~~L~L~~~~~~-----~i~~~~~~L~~L~L~~~~l----~~~~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~ 430 (733)
.+|++|+|+...+. .+...|.+|+.|.|.+..+ ...+..-.+|+.|+|+.|.+++..++..++.+|..|.+
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 34666666665443 3445677777777776543 33455667899999999999988888888889999999
Q ss_pred EeccCCCCCChhHHHHHHHhcccccccccccCCCC-CcC-----CCCCCCccEEEeCCCCCCchHHHHHhhCCCCcCEEE
Q 004729 431 LDMSNCSCVSDESLREIALSCANLRILNSSYCPNI-SLE-----SVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLE 504 (733)
Q Consensus 431 L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~~l-~~~-----~~~l~~L~~L~L~~c~~l~~~~~~~l~~~~~L~~L~ 504 (733)
|+++.|.-.++..-..+..--++|+.|++++|... ... .-++|+|.+|+++.|..+++..+..+-+++.|++|.
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS 344 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS 344 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence 99998885455433333334568888888887622 111 126888888888888888888888888888888888
Q ss_pred EecCCCCccccc----CCCCCcEEEeccc
Q 004729 505 LDNCNLLTSVSL----ELPRLQNIRLVHC 529 (733)
Q Consensus 505 L~~~~~l~~~~~----~l~~L~~L~L~~c 529 (733)
++.|..+..-.. ..|.|.+|++.+|
T Consensus 345 lsRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 345 LSRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hhhhcCCChHHeeeeccCcceEEEEeccc
Confidence 888865442211 1355556655554
|
|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.3e-09 Score=121.18 Aligned_cols=185 Identities=28% Similarity=0.482 Sum_probs=106.4
Q ss_pred cCCchHHHhhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCCCCCChhHHHHHHHhcccccccccccCCCCCc
Q 004729 388 KRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNISL 467 (733)
Q Consensus 388 ~~~~l~~~~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~ 467 (733)
++..+..+...|++|++|.+..|..+++.++..+...|++|++|+++.|..+++.++..+..+|++|+.|.+..+..
T Consensus 257 sd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~--- 333 (482)
T KOG1947|consen 257 TDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNG--- 333 (482)
T ss_pred CchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCC---
Confidence 33445556666888888887777777888888888888888888888888777777777777777777766654432
Q ss_pred CCCCCCCccEEEeCCCCCCc-hHHH-HHhhCCCCcCEEEEecCCCCcccccCCCCCcEEEeccccCCcccccccccccee
Q 004729 468 ESVRLPMLTVLQLHSCEGIT-SASM-AAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAMMLSSI 545 (733)
Q Consensus 468 ~~~~l~~L~~L~L~~c~~l~-~~~~-~~l~~~~~L~~L~L~~~~~l~~~~~~l~~L~~L~L~~c~~l~~l~l~~~~L~~l 545 (733)
++.++.+.+.+|.... +... ..+..++.++.+.+..+. ..+.++ ..
T Consensus 334 ----c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~----------------------~~~~~~------~~ 381 (482)
T KOG1947|consen 334 ----CPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG----------------------ISDLGL------EL 381 (482)
T ss_pred ----CccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh----------------------ccCcch------HH
Confidence 4445555555443332 1211 122234444444444432 222221 11
Q ss_pred ecccCcCCceeeeccCccccccccccccHHHHHhcCCCCcEEeecCCCCCChhhhhhhcCCCCCCCccEEEeecCCCCcc
Q 004729 546 MVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTV 625 (733)
Q Consensus 546 ~l~~c~~L~~L~l~~n~L~~l~~~~~~~L~~l~~~~~~L~~L~Ls~C~~lt~~~~~~~~~~~~l~~L~~L~L~~c~~L~~ 625 (733)
.+..|+.|+ .. +......+..++.|+++.|...++..+..... .+.+++.+.+.+|+.+..
T Consensus 382 ~l~gc~~l~-~~----------------l~~~~~~~~~l~~L~l~~~~~~t~~~l~~~~~--~~~~~~~l~~~~~~~~~~ 442 (482)
T KOG1947|consen 382 SLRGCPNLT-ES----------------LELRLCRSDSLRVLNLSDCRLVTDKGLRCLAD--SCSNLKDLDLSGCRVITL 442 (482)
T ss_pred HhcCCcccc-hH----------------HHHHhccCCccceEecccCccccccchHHHhh--hhhccccCCccCcccccc
Confidence 245555542 11 11112223347777777777777666544431 166677777777766655
Q ss_pred c
Q 004729 626 V 626 (733)
Q Consensus 626 ~ 626 (733)
.
T Consensus 443 ~ 443 (482)
T KOG1947|consen 443 K 443 (482)
T ss_pred h
Confidence 4
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.5e-09 Score=110.27 Aligned_cols=266 Identities=20% Similarity=0.305 Sum_probs=140.3
Q ss_pred HHHhccCCCCCcEEEEecCcCCcccc----cccccCCCccEEEeeccccchhccc-CCCCcEEEEcCCchHHHhhCCCCc
Q 004729 328 FFHALADCSMLKSLNVNDATLGNGVQ----EIPINHDQLRRLEITKCRVMRVSIR-CPQLEHLSLKRSNMAQAVLNCPLL 402 (733)
Q Consensus 328 ~~~~L~~~~~L~~L~L~~~~l~~~~~----~~~~~~~~L~~L~L~~~~~~~i~~~-~~~L~~L~L~~~~l~~~~~~~~~L 402 (733)
....+.....++.++|++|.++.... ......++|+..++++--..+.... .+.| +.+...+..+|+|
T Consensus 22 v~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L-------~~l~~aL~~~~~L 94 (382)
T KOG1909|consen 22 VEEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEAL-------KMLSKALLGCPKL 94 (382)
T ss_pred HHHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHH-------HHHHHHHhcCCce
Confidence 44455566777777777777664322 2222333444443332100000000 0000 1122345567777
Q ss_pred cEEEEecCCCCChHH---HHHHHhcCCCCcEEeccCCCCCChhHHHHHHHhcccccccccccCCCCCcCCCCCCCccEEE
Q 004729 403 HLLDIASCHKLSDAA---IRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNISLESVRLPMLTVLQ 479 (733)
Q Consensus 403 ~~L~L~~c~~l~~~~---l~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~~~l~~L~~L~ 479 (733)
++|+|+. +.+...+ +..++.+|..|++|.|.+|. +...+-..+...+..|.... ....-++|+.+.
T Consensus 95 ~~ldLSD-NA~G~~g~~~l~~ll~s~~~L~eL~L~N~G-lg~~ag~~l~~al~~l~~~k---------k~~~~~~Lrv~i 163 (382)
T KOG1909|consen 95 QKLDLSD-NAFGPKGIRGLEELLSSCTDLEELYLNNCG-LGPEAGGRLGRALFELAVNK---------KAASKPKLRVFI 163 (382)
T ss_pred eEeeccc-cccCccchHHHHHHHHhccCHHHHhhhcCC-CChhHHHHHHHHHHHHHHHh---------ccCCCcceEEEE
Confidence 7777776 4454433 44566677778888887776 66655555553333222111 122456788888
Q ss_pred eCCCCCCchHHHHHhh----CCCCcCEEEEecCCCCcccccCCCCCcEEEeccccCCccccccccccceeecccCcCCce
Q 004729 480 LHSCEGITSASMAAIS----HSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAALHR 555 (733)
Q Consensus 480 L~~c~~l~~~~~~~l~----~~~~L~~L~L~~~~~l~~~~~~l~~L~~L~L~~c~~l~~l~l~~~~L~~l~l~~c~~L~~ 555 (733)
..+ +.+.+.+...++ ..+.|+.+.++.+..-.. +..+-...+..|+.|+.
T Consensus 164 ~~r-Nrlen~ga~~~A~~~~~~~~leevr~~qN~I~~e-------------------------G~~al~eal~~~~~Lev 217 (382)
T KOG1909|consen 164 CGR-NRLENGGATALAEAFQSHPTLEEVRLSQNGIRPE-------------------------GVTALAEALEHCPHLEV 217 (382)
T ss_pred eec-cccccccHHHHHHHHHhccccceEEEecccccCc-------------------------hhHHHHHHHHhCCccee
Confidence 887 667766554443 467888888877642110 00001112577888888
Q ss_pred eeeccCccccccccccccHHHHHhcCCCCcEEeecCCCCCChhhhhhhcC--CCCCCCccEEEeecCCCCcccc------
Q 004729 556 INITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSD--GGGCPMLKSLVLDNCEGLTVVR------ 627 (733)
Q Consensus 556 L~l~~n~L~~l~~~~~~~L~~l~~~~~~L~~L~Ls~C~~lt~~~~~~~~~--~~~l~~L~~L~L~~c~~L~~~~------ 627 (733)
|++.+|.|+.. +...|......+++|++|.+++| .+.+.+...|.. ....|+|+.|.+.+|..-....
T Consensus 218 Ldl~DNtft~e---gs~~LakaL~s~~~L~El~l~dc-ll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~ 293 (382)
T KOG1909|consen 218 LDLRDNTFTLE---GSVALAKALSSWPHLRELNLGDC-LLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAAC 293 (382)
T ss_pred eecccchhhhH---HHHHHHHHhcccchheeeccccc-ccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHH
Confidence 88888877643 12223333345678888888888 444433322211 1347788888887773222211
Q ss_pred -ccCCCccEEecccc
Q 004729 628 -FCSTSLVSLSLVGC 641 (733)
Q Consensus 628 -~~~~sL~~L~L~~c 641 (733)
...+.|++|+|++|
T Consensus 294 ~~ek~dL~kLnLngN 308 (382)
T KOG1909|consen 294 MAEKPDLEKLNLNGN 308 (382)
T ss_pred HhcchhhHHhcCCcc
Confidence 13455555555554
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.88 E-value=8.7e-09 Score=104.79 Aligned_cols=228 Identities=24% Similarity=0.350 Sum_probs=140.1
Q ss_pred HHHHHHhhCCCccEEEEcCCCchh----HHHHHHhhcCCCCCEEEecCc---cCChHH-------HHhccCCCCCcEEEE
Q 004729 278 QFEDVCQRYPNATEVNIYGAPAIH----LLVMKAVSLLRNLEALTLGRG---QLGDAF-------FHALADCSMLKSLNV 343 (733)
Q Consensus 278 ~l~~~~~~~~~L~~L~L~~~~~~~----~~~~~~l~~l~~L~~L~Ls~~---~i~~~~-------~~~L~~~~~L~~L~L 343 (733)
.+.........++.+++++.. +. ..+...+...++|+..++++- ...+.. .+.|..||+|++|+|
T Consensus 21 ~v~~~~~~~~s~~~l~lsgnt-~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldL 99 (382)
T KOG1909|consen 21 DVEEELEPMDSLTKLDLSGNT-FGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDL 99 (382)
T ss_pred hHHHHhcccCceEEEeccCCc-hhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeec
Confidence 344555566677788887733 22 223444556677777777653 222222 234456788888888
Q ss_pred ecCcCCc----ccccccccCCCccEEEeeccccch-----------------hcccCCCCcEEEEcCCch--------HH
Q 004729 344 NDATLGN----GVQEIPINHDQLRRLEITKCRVMR-----------------VSIRCPQLEHLSLKRSNM--------AQ 394 (733)
Q Consensus 344 ~~~~l~~----~~~~~~~~~~~L~~L~L~~~~~~~-----------------i~~~~~~L~~L~L~~~~l--------~~ 394 (733)
++|-++. .+.+++.++..|++|.+.+|.+.. ....-++|+.+...+|.+ ..
T Consensus 100 SDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~ 179 (382)
T KOG1909|consen 100 SDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAE 179 (382)
T ss_pred cccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHH
Confidence 8887764 244556678888888888887542 123456788887776533 34
Q ss_pred HhhCCCCccEEEEecCCCCChHHH---HHHHhcCCCCcEEeccCCCCCChhHHHHHH---HhcccccccccccCCCCCcC
Q 004729 395 AVLNCPLLHLLDIASCHKLSDAAI---RLAATSCPQLESLDMSNCSCVSDESLREIA---LSCANLRILNSSYCPNISLE 468 (733)
Q Consensus 395 ~~~~~~~L~~L~L~~c~~l~~~~l---~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~---~~~~~L~~L~L~~~~~l~~~ 468 (733)
.+...|.|+.+.+.. +.+...++ ...+.+|++|+.|+|..+. ++..+-..++ ..+++|+.|++++|-.-...
T Consensus 180 ~~~~~~~leevr~~q-N~I~~eG~~al~eal~~~~~LevLdl~DNt-ft~egs~~LakaL~s~~~L~El~l~dcll~~~G 257 (382)
T KOG1909|consen 180 AFQSHPTLEEVRLSQ-NGIRPEGVTALAEALEHCPHLEVLDLRDNT-FTLEGSVALAKALSSWPHLRELNLGDCLLENEG 257 (382)
T ss_pred HHHhccccceEEEec-ccccCchhHHHHHHHHhCCcceeeecccch-hhhHHHHHHHHHhcccchheeeccccccccccc
Confidence 466778888888887 45554443 3456678888888888876 5554444443 34556777777777521111
Q ss_pred --------CCCCCCccEEEeCCCCCCchHHHHHh----hCCCCcCEEEEecCC
Q 004729 469 --------SVRLPMLTVLQLHSCEGITSASMAAI----SHSYMLEVLELDNCN 509 (733)
Q Consensus 469 --------~~~l~~L~~L~L~~c~~l~~~~~~~l----~~~~~L~~L~L~~~~ 509 (733)
....|+|+.|.+.++ .++......+ ...+.|+.|+|++|.
T Consensus 258 a~a~~~al~~~~p~L~vl~l~gN-eIt~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 258 AIAFVDALKESAPSLEVLELAGN-EITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred HHHHHHHHhccCCCCceeccCcc-hhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 114677888888774 4554443333 345777777777774
|
|
| >PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B | Back alignment and domain information |
|---|
Probab=98.86 E-value=4.7e-10 Score=82.76 Aligned_cols=46 Identities=39% Similarity=0.803 Sum_probs=39.8
Q ss_pred ccCCCHHHHHHHHhcCChhhHHHHHHHHHHHHHhhcCCCCeeEEee
Q 004729 224 RMDLTDDLLHMVFSFLDYVDLCRAAIVCRQWRAASAHEDFWRCLNF 269 (733)
Q Consensus 224 ~~~LP~ElL~~If~~L~~~dl~~~~lVck~W~~l~~~~~lw~~l~l 269 (733)
|..||+|++.+||+||+..|+.++++|||+|+.++.++.+|+++.+
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW~~~~~ 46 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLWRRLCL 46 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHHHHHC-
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhhhhhcc
Confidence 3579999999999999999999999999999999988899987654
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.82 E-value=3.7e-09 Score=110.19 Aligned_cols=212 Identities=19% Similarity=0.148 Sum_probs=146.9
Q ss_pred hhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCCCCCChhHHHHHHHhcccccccccccCCCCCcCC----CC
Q 004729 396 VLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNISLES----VR 471 (733)
Q Consensus 396 ~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~----~~ 471 (733)
-+++.+|++..|.+| .+.+.+.......|++++.|+++.+---.-..+..++..+|+|+.|+++.+....+.. ..
T Consensus 117 Qsn~kkL~~IsLdn~-~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~ 195 (505)
T KOG3207|consen 117 QSNLKKLREISLDNY-RVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLL 195 (505)
T ss_pred hhhHHhhhheeecCc-cccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhh
Confidence 446777888888886 3555554456778999999999987522334577788899999999998776433222 25
Q ss_pred CCCccEEEeCCCCCCchHHHHHhhCCCCcCEEEEecCCCCccccc---CCCCCcEEEeccccCCccccccccccceeecc
Q 004729 472 LPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSL---ELPRLQNIRLVHCRKFADLNLRAMMLSSIMVS 548 (733)
Q Consensus 472 l~~L~~L~L~~c~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~---~l~~L~~L~L~~c~~l~~l~l~~~~L~~l~l~ 548 (733)
+++|+.|.+++|.--.......+..+|+|+.|++..|..+..... .+..|+.|+|++-..+..-.+. .+.
T Consensus 196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~-------~~~ 268 (505)
T KOG3207|consen 196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGY-------KVG 268 (505)
T ss_pred hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccccccccc-------ccc
Confidence 789999999999755445445556799999999999853332221 1567778887765433332221 157
Q ss_pred cCcCCceeeeccCccccccccccccHHHHHhcCCCCcEEeecCCCCCChhhhhhhcCCCCCCCccEEEeec
Q 004729 549 NCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDN 619 (733)
Q Consensus 549 ~c~~L~~L~l~~n~L~~l~~~~~~~L~~l~~~~~~L~~L~Ls~C~~lt~~~~~~~~~~~~l~~L~~L~L~~ 619 (733)
..|.|..|.++.+++.++...+.+.+... ..+++|+.|++.. +.+.++. .+..+..+++|+.|.+..
T Consensus 269 ~l~~L~~Lnls~tgi~si~~~d~~s~~kt-~~f~kL~~L~i~~-N~I~~w~--sl~~l~~l~nlk~l~~~~ 335 (505)
T KOG3207|consen 269 TLPGLNQLNLSSTGIASIAEPDVESLDKT-HTFPKLEYLNISE-NNIRDWR--SLNHLRTLENLKHLRITL 335 (505)
T ss_pred cccchhhhhccccCcchhcCCCccchhhh-cccccceeeeccc-Ccccccc--ccchhhccchhhhhhccc
Confidence 78899999999999999887776655433 3689999999999 6775432 233345577777777544
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.9e-08 Score=117.20 Aligned_cols=249 Identities=18% Similarity=0.223 Sum_probs=117.8
Q ss_pred CCccEEEEcCCCchhHHHHHHhhcCCCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEE
Q 004729 287 PNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLE 366 (733)
Q Consensus 287 ~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~ 366 (733)
.+.+.|++.+. .+..+ +..+ .++|+.|+|++|.++ .++..+ .++|++|++++|.+.. ++.. ..+.|+.|+
T Consensus 178 ~~~~~L~L~~~-~LtsL-P~~I--p~~L~~L~Ls~N~Lt-sLP~~l--~~nL~~L~Ls~N~Lts-LP~~--l~~~L~~L~ 247 (754)
T PRK15370 178 NNKTELRLKIL-GLTTI-PACI--PEQITTLILDNNELK-SLPENL--QGNIKTLYANSNQLTS-IPAT--LPDTIQEME 247 (754)
T ss_pred cCceEEEeCCC-CcCcC-Cccc--ccCCcEEEecCCCCC-cCChhh--ccCCCEEECCCCcccc-CChh--hhccccEEE
Confidence 34667777663 22221 1111 246888888888777 333333 3578888888776653 2211 124677777
Q ss_pred eeccccchhcccC-CCCcEEEEcCCchHHHhhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCCCCCChhHHH
Q 004729 367 ITKCRVMRVSIRC-PQLEHLSLKRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLR 445 (733)
Q Consensus 367 L~~~~~~~i~~~~-~~L~~L~L~~~~l~~~~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~l~ 445 (733)
+++|.+..++..+ .+|+.|++++|.+..+...+ .++|+.|++++|. ++. ++
T Consensus 248 Ls~N~L~~LP~~l~s~L~~L~Ls~N~L~~LP~~l-------------------------~~sL~~L~Ls~N~-Lt~--LP 299 (754)
T PRK15370 248 LSINRITELPERLPSALQSLDLFHNKISCLPENL-------------------------PEELRYLSVYDNS-IRT--LP 299 (754)
T ss_pred CcCCccCcCChhHhCCCCEEECcCCccCcccccc-------------------------CCCCcEEECCCCc-ccc--Cc
Confidence 7777665544322 23555555444443221111 1345555555543 221 11
Q ss_pred HHHHhcccccccccccCCCCCcCCCCCCCccEEEeCCCCCCchHHHHHhhCCCCcCEEEEecCCCCcccccC-CCCCcEE
Q 004729 446 EIALSCANLRILNSSYCPNISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLE-LPRLQNI 524 (733)
Q Consensus 446 ~l~~~~~~L~~L~L~~~~~l~~~~~~l~~L~~L~L~~c~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~-l~~L~~L 524 (733)
.. ..++|+.|+++++..........++|+.|.+.+|. ++... ..+ .++|+.|++++|. ++.+|.. .++|+.|
T Consensus 300 ~~--lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~-Lt~LP-~~l--~~sL~~L~Ls~N~-L~~LP~~lp~~L~~L 372 (754)
T PRK15370 300 AH--LPSGITHLNVQSNSLTALPETLPPGLKTLEAGENA-LTSLP-ASL--PPELQVLDVSKNQ-ITVLPETLPPTITTL 372 (754)
T ss_pred cc--chhhHHHHHhcCCccccCCccccccceeccccCCc-cccCC-hhh--cCcccEEECCCCC-CCcCChhhcCCcCEE
Confidence 00 01245555555543221111123456666666532 32211 111 2466666666663 3444432 2455555
Q ss_pred EeccccCCccccccccccceeecccCcCCceeeeccCccccccccccccHHHHHhcCCCCcEEeecCCCCCC
Q 004729 525 RLVHCRKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLT 596 (733)
Q Consensus 525 ~L~~c~~l~~l~l~~~~L~~l~l~~c~~L~~L~l~~n~L~~l~~~~~~~L~~l~~~~~~L~~L~Ls~C~~lt 596 (733)
++.++ .++.+.- .--..|+.|++.+|+|..+. +.+..+...++++..|+|.+ +.++
T Consensus 373 dLs~N-~Lt~LP~----------~l~~sL~~LdLs~N~L~~LP----~sl~~~~~~~~~l~~L~L~~-Npls 428 (754)
T PRK15370 373 DVSRN-ALTNLPE----------NLPAALQIMQASRNNLVRLP----ESLPHFRGEGPQPTRIIVEY-NPFS 428 (754)
T ss_pred ECCCC-cCCCCCH----------hHHHHHHHHhhccCCcccCc----hhHHHHhhcCCCccEEEeeC-CCcc
Confidence 55554 2222110 00124566666666665442 23444444556677777776 4454
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=5.1e-08 Score=113.72 Aligned_cols=239 Identities=19% Similarity=0.155 Sum_probs=130.0
Q ss_pred CCCcEEeccCCCCCChhHHHHHHHhcccccccccccCCCCCcCCCCCCCccEEEeCCCCCCchHHHHHhhCCCCcCEEEE
Q 004729 426 PQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLEL 505 (733)
Q Consensus 426 ~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~~~l~~L~~L~L~~c~~l~~~~~~~l~~~~~L~~L~L 505 (733)
.+...|++++.. ++. ++.. -.+.|+.|+++++..........++|++|+++++ .++... ..+ .++|+.|+|
T Consensus 178 ~~~~~L~L~~~~-Lts--LP~~--Ip~~L~~L~Ls~N~LtsLP~~l~~nL~~L~Ls~N-~LtsLP-~~l--~~~L~~L~L 248 (754)
T PRK15370 178 NNKTELRLKILG-LTT--IPAC--IPEQITTLILDNNELKSLPENLQGNIKTLYANSN-QLTSIP-ATL--PDTIQEMEL 248 (754)
T ss_pred cCceEEEeCCCC-cCc--CCcc--cccCCcEEEecCCCCCcCChhhccCCCEEECCCC-ccccCC-hhh--hccccEEEC
Confidence 356778887754 332 2211 1246888888776532222223457888888874 344321 111 246788888
Q ss_pred ecCCCCcccccCC-CCCcEEEeccccCCccccccccccceeecccCcCCceeeeccCccccccccccccHHHHHhcCCCC
Q 004729 506 DNCNLLTSVSLEL-PRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCL 584 (733)
Q Consensus 506 ~~~~~l~~~~~~l-~~L~~L~L~~c~~l~~l~l~~~~L~~l~l~~c~~L~~L~l~~n~L~~l~~~~~~~L~~l~~~~~~L 584 (733)
++|. +..+|..+ .+|+.|.+.++ +++.+. -.-+++|+.|++++|.|+.+.. .+ .++|
T Consensus 249 s~N~-L~~LP~~l~s~L~~L~Ls~N-~L~~LP----------~~l~~sL~~L~Ls~N~Lt~LP~----~l------p~sL 306 (754)
T PRK15370 249 SINR-ITELPERLPSALQSLDLFHN-KISCLP----------ENLPEELRYLSVYDNSIRTLPA----HL------PSGI 306 (754)
T ss_pred cCCc-cCcCChhHhCCCCEEECcCC-ccCccc----------cccCCCCcEEECCCCccccCcc----cc------hhhH
Confidence 8774 44555443 35666666432 333221 1123467777777777765421 11 1357
Q ss_pred cEEeecCCCCCChhhhhhhcCCCCCCCccEEEeecCCCCccccc-cCCCccEEeccccccccccccc-cccccEEecccc
Q 004729 585 QEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRF-CSTSLVSLSLVGCRAITALELK-CPILEKVCLDGC 662 (733)
Q Consensus 585 ~~L~Ls~C~~lt~~~~~~~~~~~~l~~L~~L~L~~c~~L~~~~~-~~~sL~~L~L~~c~~L~~l~~~-~p~L~~L~L~~c 662 (733)
+.|++++ +.++... . ...++|+.|++.+| .++.++. .+++|+.|++++| .|+.++.. .++|++|+|++|
T Consensus 307 ~~L~Ls~-N~Lt~LP-~-----~l~~sL~~L~Ls~N-~Lt~LP~~l~~sL~~L~Ls~N-~L~~LP~~lp~~L~~LdLs~N 377 (754)
T PRK15370 307 THLNVQS-NSLTALP-E-----TLPPGLKTLEAGEN-ALTSLPASLPPELQVLDVSKN-QITVLPETLPPTITTLDVSRN 377 (754)
T ss_pred HHHHhcC-CccccCC-c-----cccccceeccccCC-ccccCChhhcCcccEEECCCC-CCCcCChhhcCCcCEEECCCC
Confidence 7777777 3554211 1 12357777877776 3555543 3467777777774 45555432 356777777774
Q ss_pred ccccccc-ccccCCcEEEecCCCCccccccCc-------ccccEEEecCCCC
Q 004729 663 DHIESAS-FVPVALQSLNLGICPKLSTLGIEA-------LHMVVLELKGCGV 706 (733)
Q Consensus 663 ~~L~~~~-~~~~~L~~L~L~~c~~L~~l~~~~-------~~L~~L~l~~c~~ 706 (733)
.|+.+. ..+.+|+.|+++++ +|+.+|... +++..|.+.+++.
T Consensus 378 -~Lt~LP~~l~~sL~~LdLs~N-~L~~LP~sl~~~~~~~~~l~~L~L~~Npl 427 (754)
T PRK15370 378 -ALTNLPENLPAALQIMQASRN-NLVRLPESLPHFRGEGPQPTRIIVEYNPF 427 (754)
T ss_pred -cCCCCCHhHHHHHHHHhhccC-CcccCchhHHHHhhcCCCccEEEeeCCCc
Confidence 344321 12335667777665 366555321 2355666666553
|
|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.4e-07 Score=111.76 Aligned_cols=311 Identities=23% Similarity=0.320 Sum_probs=178.4
Q ss_pred CCCccEEEeeccccchhc--ccCCCCcEEEEcCCc--hH----HHhhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcE
Q 004729 359 HDQLRRLEITKCRVMRVS--IRCPQLEHLSLKRSN--MA----QAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLES 430 (733)
Q Consensus 359 ~~~L~~L~L~~~~~~~i~--~~~~~L~~L~L~~~~--l~----~~~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~ 430 (733)
....++..+.++....++ ..+|+|++|-+.++. +. .++..+|.|+.|++++|..+. .++..++.+-+|+.
T Consensus 522 ~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~--~LP~~I~~Li~Lry 599 (889)
T KOG4658|consen 522 WNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLS--KLPSSIGELVHLRY 599 (889)
T ss_pred hhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccC--cCChHHhhhhhhhc
Confidence 355666666666655444 457789899888875 33 447789999999999976544 36677778889999
Q ss_pred EeccCCCCCChhHHHHHHHhcccccccccccCCCCCcCC---CCCCCccEEEeCCCC-CCchHHHHHhhCCCCcCEEEEe
Q 004729 431 LDMSNCSCVSDESLREIALSCANLRILNSSYCPNISLES---VRLPMLTVLQLHSCE-GITSASMAAISHSYMLEVLELD 506 (733)
Q Consensus 431 L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~---~~l~~L~~L~L~~c~-~l~~~~~~~l~~~~~L~~L~L~ 506 (733)
|+++++. +. .++.-..++.+|.+|++.....+.... ..+++|++|.+.... ..+...+..+..+.+|+.+.+.
T Consensus 600 L~L~~t~-I~--~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~ 676 (889)
T KOG4658|consen 600 LDLSDTG-IS--HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSIT 676 (889)
T ss_pred ccccCCC-cc--ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheee
Confidence 9999876 44 345555577899999998776443322 258999999998743 3334444455566667766665
Q ss_pred cCCCCcccc-cCCCCCcEE----EeccccCCccccccccccceeecccCcCCceeeeccCccccccccccccHHHHHhcC
Q 004729 507 NCNLLTSVS-LELPRLQNI----RLVHCRKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQC 581 (733)
Q Consensus 507 ~~~~l~~~~-~~l~~L~~L----~L~~c~~l~~l~l~~~~L~~l~l~~c~~L~~L~l~~n~L~~l~~~~~~~L~~l~~~~ 581 (733)
......... ...+.|..+ .+..|...+ ....+....+|+.|.+.++.+.+......+...... .|
T Consensus 677 ~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~---------~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~-~f 746 (889)
T KOG4658|consen 677 ISSVLLLEDLLGMTRLRSLLQSLSIEGCSKRT---------LISSLGSLGNLEELSILDCGISEIVIEWEESLIVLL-CF 746 (889)
T ss_pred cchhHhHhhhhhhHHHHHHhHhhhhcccccce---------eecccccccCcceEEEEcCCCchhhcccccccchhh-hH
Confidence 433200000 112222222 111111000 011255667778888777766544332211111111 35
Q ss_pred CCCcEEeecCCCCCChhhhhhhcCCCCCCCccEEEeecCCCCcccccc---CCCccEEeccccccccccccccccccEE-
Q 004729 582 QCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRFC---STSLVSLSLVGCRAITALELKCPILEKV- 657 (733)
Q Consensus 582 ~~L~~L~Ls~C~~lt~~~~~~~~~~~~l~~L~~L~L~~c~~L~~~~~~---~~sL~~L~L~~c~~L~~l~~~~p~L~~L- 657 (733)
+++..+.+.+|..+.+.....| .|+|+.|.+..|+.++++... +..++.+. ..+++++.+
T Consensus 747 ~~l~~~~~~~~~~~r~l~~~~f-----~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i-----------~~f~~~~~l~ 810 (889)
T KOG4658|consen 747 PNLSKVSILNCHMLRDLTWLLF-----APHLTSLSLVSCRLLEDIIPKLKALLELKELI-----------LPFNKLEGLR 810 (889)
T ss_pred HHHHHHHhhccccccccchhhc-----cCcccEEEEecccccccCCCHHHHhhhcccEE-----------ecccccccce
Confidence 6777777778877766554444 688899998888888777542 22222211 112222222
Q ss_pred eccccccccc---ccccccCCcEEEecCCCCccccccCcccccEEEecCC
Q 004729 658 CLDGCDHIES---ASFVPVALQSLNLGICPKLSTLGIEALHMVVLELKGC 704 (733)
Q Consensus 658 ~L~~c~~L~~---~~~~~~~L~~L~L~~c~~L~~l~~~~~~L~~L~l~~c 704 (733)
.+.+...+.. ..+.-+.++.+.+..||++..+|. +.++.+.+|
T Consensus 811 ~~~~l~~l~~i~~~~l~~~~l~~~~ve~~p~l~~~P~----~~~~~i~~~ 856 (889)
T KOG4658|consen 811 MLCSLGGLPQLYWLPLSFLKLEELIVEECPKLGKLPL----LSTLTIVGC 856 (889)
T ss_pred eeecCCCCceeEecccCccchhheehhcCcccccCcc----ccccceecc
Confidence 1222222221 122222367777777888887754 444556665
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.60 E-value=2.2e-08 Score=104.56 Aligned_cols=181 Identities=23% Similarity=0.229 Sum_probs=108.6
Q ss_pred cCCCCCEEEecCccCChHHH-HhccCCCCCcEEEEecCcCCc--ccccccccCCCccEEEeeccccchhcccCCCCcEEE
Q 004729 310 LLRNLEALTLGRGQLGDAFF-HALADCSMLKSLNVNDATLGN--GVQEIPINHDQLRRLEITKCRVMRVSIRCPQLEHLS 386 (733)
Q Consensus 310 ~l~~L~~L~Ls~~~i~~~~~-~~L~~~~~L~~L~L~~~~l~~--~~~~~~~~~~~L~~L~L~~~~~~~i~~~~~~L~~L~ 386 (733)
.+..|+++.|.++.+.+.+- .....|++++.|+|+.|-+.. .+..+...+|+|+.|+++.|.+.....
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~--------- 189 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFIS--------- 189 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCcc---------
Confidence 44455555555555443322 223346666666666554432 233344445555555555543221110
Q ss_pred EcCCchHHHhhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCCCCCChhHHHHHHHhcccccccccccCCCCC
Q 004729 387 LKRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNIS 466 (733)
Q Consensus 387 L~~~~l~~~~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~ 466 (733)
+. ....+++|+.|.+++| +++-..+..++..+|+|+.|.+..+..+....... ..+..|++|+|+++..+.
T Consensus 190 ---s~---~~~~l~~lK~L~l~~C-Gls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~--~i~~~L~~LdLs~N~li~ 260 (505)
T KOG3207|consen 190 ---SN---TTLLLSHLKQLVLNSC-GLSWKDVQWILLTFPSLEVLYLEANEIILIKATST--KILQTLQELDLSNNNLID 260 (505)
T ss_pred ---cc---chhhhhhhheEEeccC-CCCHHHHHHHHHhCCcHHHhhhhcccccceecchh--hhhhHHhhccccCCcccc
Confidence 00 0125789999999998 58888888899999999999999885333222221 134689999999988776
Q ss_pred cCCC----CCCCccEEEeCCCCCCchHHHHH------hhCCCCcCEEEEecCC
Q 004729 467 LESV----RLPMLTVLQLHSCEGITSASMAA------ISHSYMLEVLELDNCN 509 (733)
Q Consensus 467 ~~~~----~l~~L~~L~L~~c~~l~~~~~~~------l~~~~~L~~L~L~~~~ 509 (733)
+..+ .+|.|+.|.+..| ++.+..... ...++.|+.|++..|.
T Consensus 261 ~~~~~~~~~l~~L~~Lnls~t-gi~si~~~d~~s~~kt~~f~kL~~L~i~~N~ 312 (505)
T KOG3207|consen 261 FDQGYKVGTLPGLNQLNLSST-GIASIAEPDVESLDKTHTFPKLEYLNISENN 312 (505)
T ss_pred cccccccccccchhhhhcccc-CcchhcCCCccchhhhcccccceeeecccCc
Confidence 6533 6888888888874 344332211 2346778888887774
|
|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.34 E-value=4.3e-08 Score=101.10 Aligned_cols=121 Identities=17% Similarity=0.151 Sum_probs=81.6
Q ss_pred CccEEEEcCCCchhHHHHHHhhcCCCCCEEEecCccCChHHHHhccCCCCCcEEEEec-CcCCcccccccccCCCccEEE
Q 004729 288 NATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVND-ATLGNGVQEIPINHDQLRRLE 366 (733)
Q Consensus 288 ~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~-~~l~~~~~~~~~~~~~L~~L~ 366 (733)
....+.+.. +.+..+...+|+.+++|++|||++|.|+...+.++..+++|.+|-+.+ |.+.+.....+..+..|+.|.
T Consensus 68 ~tveirLdq-N~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 68 ETVEIRLDQ-NQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL 146 (498)
T ss_pred cceEEEecc-CCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence 345566655 566666677788888888888888888877788888887777776665 667666566666777777777
Q ss_pred eeccccc----hhcccCCCCcEEEEcCCchHHH----hhCCCCccEEEEec
Q 004729 367 ITKCRVM----RVSIRCPQLEHLSLKRSNMAQA----VLNCPLLHLLDIAS 409 (733)
Q Consensus 367 L~~~~~~----~i~~~~~~L~~L~L~~~~l~~~----~~~~~~L~~L~L~~ 409 (733)
+.-|.+. .....+++|..|.+.+|.+..+ +.....++.+.+..
T Consensus 147 lNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~ 197 (498)
T KOG4237|consen 147 LNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQ 197 (498)
T ss_pred cChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhc
Confidence 7665544 3335577777777777766544 23444555555544
|
|
| >smart00256 FBOX A Receptor for Ubiquitination Targets | Back alignment and domain information |
|---|
Probab=98.33 E-value=6.4e-07 Score=63.77 Aligned_cols=40 Identities=38% Similarity=0.615 Sum_probs=37.5
Q ss_pred CCHHHHHHHHhcCChhhHHHHHHHHHHHHHhhcCCCCeeE
Q 004729 227 LTDDLLHMVFSFLDYVDLCRAAIVCRQWRAASAHEDFWRC 266 (733)
Q Consensus 227 LP~ElL~~If~~L~~~dl~~~~lVck~W~~l~~~~~lw~~ 266 (733)
||+|++.+||.+|+..|+.++++|||+|+.++..+.+|..
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~~ 40 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWFK 40 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhhc
Confidence 7999999999999999999999999999999998888864
|
|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.3e-06 Score=103.72 Aligned_cols=100 Identities=16% Similarity=0.150 Sum_probs=55.9
Q ss_pred cCCCCCEEEecCcc--CChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEEeeccccchhccc---CCCCcE
Q 004729 310 LLRNLEALTLGRGQ--LGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIR---CPQLEH 384 (733)
Q Consensus 310 ~l~~L~~L~Ls~~~--i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~i~~~---~~~L~~ 384 (733)
.++.|++|-+..+. +.......+..+|.|+.|+|++|.-...+|...+.+-+|+.|+++++.+..++.. +..|.+
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~ 622 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIY 622 (889)
T ss_pred CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhhe
Confidence 44556666665553 2222233345567777777776665556666666667777777777666655543 334455
Q ss_pred EEEcCCch----HHHhhCCCCccEEEEec
Q 004729 385 LSLKRSNM----AQAVLNCPLLHLLDIAS 409 (733)
Q Consensus 385 L~L~~~~l----~~~~~~~~~L~~L~L~~ 409 (733)
|++..+.. ..+...+++|++|.+..
T Consensus 623 Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 623 LNLEVTGRLESIPGILLELQSLRVLRLPR 651 (889)
T ss_pred eccccccccccccchhhhcccccEEEeec
Confidence 55544321 22334466677776665
|
|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.19 E-value=7e-08 Score=99.54 Aligned_cols=98 Identities=15% Similarity=0.167 Sum_probs=68.7
Q ss_pred CCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEEeec-cccchhcc----cCCCCcEEE
Q 004729 312 RNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITK-CRVMRVSI----RCPQLEHLS 386 (733)
Q Consensus 312 ~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~-~~~~~i~~----~~~~L~~L~ 386 (733)
+...+|+|..|+|+...+.+++.+++|++|+|++|.+....+..+.++++|.+|-+.+ |.+..++. ++..|+.|.
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL 146 (498)
T ss_pred CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence 3567899999999988888899999999999999999888888888888888877766 65554442 334444444
Q ss_pred EcCCc----hHHHhhCCCCccEEEEec
Q 004729 387 LKRSN----MAQAVLNCPLLHLLDIAS 409 (733)
Q Consensus 387 L~~~~----l~~~~~~~~~L~~L~L~~ 409 (733)
+.-+. ....+..+++|..|.+..
T Consensus 147 lNan~i~Cir~~al~dL~~l~lLslyD 173 (498)
T KOG4237|consen 147 LNANHINCIRQDALRDLPSLSLLSLYD 173 (498)
T ss_pred cChhhhcchhHHHHHHhhhcchhcccc
Confidence 43322 223455555665555554
|
|
| >PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ] | Back alignment and domain information |
|---|
Probab=98.13 E-value=5.4e-07 Score=66.69 Aligned_cols=43 Identities=33% Similarity=0.698 Sum_probs=35.2
Q ss_pred cccCCCHHHHHHHHhcCChhhHHHHHHHHHHHHHhhcCCCCee
Q 004729 223 IRMDLTDDLLHMVFSFLDYVDLCRAAIVCRQWRAASAHEDFWR 265 (733)
Q Consensus 223 ~~~~LP~ElL~~If~~L~~~dl~~~~lVck~W~~l~~~~~lw~ 265 (733)
.+.+||+|++.+||+||+..|+.++++|||+|+.++.+..+|.
T Consensus 2 ~~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~ 44 (48)
T PF00646_consen 2 PLSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWK 44 (48)
T ss_dssp HHHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHH
T ss_pred CHHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccH
Confidence 3678999999999999999999999999999999988755543
|
This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B. |
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=98.04 E-value=2.1e-06 Score=82.07 Aligned_cols=79 Identities=19% Similarity=0.290 Sum_probs=17.8
Q ss_pred cCCCCCEEEecCccCChHHHHhcc-CCCCCcEEEEecCcCCcccccccccCCCccEEEeeccccchhc----ccCCCCcE
Q 004729 310 LLRNLEALTLGRGQLGDAFFHALA-DCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVS----IRCPQLEH 384 (733)
Q Consensus 310 ~l~~L~~L~Ls~~~i~~~~~~~L~-~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~i~----~~~~~L~~ 384 (733)
...++++|+|.++.|+. ...++ .+.+|+.|++++|.+... . -...+++|+.|++++|.+..+. ..+|+|+.
T Consensus 17 n~~~~~~L~L~~n~I~~--Ie~L~~~l~~L~~L~Ls~N~I~~l-~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 17 NPVKLRELNLRGNQIST--IENLGATLDKLEVLDLSNNQITKL-E-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQE 92 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S-CHHHHHH-TT--E
T ss_pred ccccccccccccccccc--ccchhhhhcCCCEEECCCCCCccc-c-CccChhhhhhcccCCCCCCccccchHHhCCcCCE
Confidence 34456777777777763 23444 456777777777766532 1 1334566666666666655432 13455555
Q ss_pred EEEcCCch
Q 004729 385 LSLKRSNM 392 (733)
Q Consensus 385 L~L~~~~l 392 (733)
|.+++|.+
T Consensus 93 L~L~~N~I 100 (175)
T PF14580_consen 93 LYLSNNKI 100 (175)
T ss_dssp EE-TTS--
T ss_pred EECcCCcC
Confidence 55555444
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=98.04 E-value=1.5e-05 Score=85.45 Aligned_cols=160 Identities=17% Similarity=0.245 Sum_probs=94.8
Q ss_pred cccCcCCceeeeccCccccccccccccHHHHHhcCCCCcEEeecCCCCCChhhhhhhcCCCCCCCccEEEeecCCCCccc
Q 004729 547 VSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVV 626 (733)
Q Consensus 547 l~~c~~L~~L~l~~n~L~~l~~~~~~~L~~l~~~~~~L~~L~Ls~C~~lt~~~~~~~~~~~~l~~L~~L~L~~c~~L~~~ 626 (733)
+..|++++.|++.++.|+.+. ..-++|+.|.+++|+.++... ..+ +++|+.|.+.+|..+..+
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP-----------~LP~sLtsL~Lsnc~nLtsLP-~~L-----P~nLe~L~Ls~Cs~L~sL 110 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLP-----------VLPNELTEITIENCNNLTTLP-GSI-----PEGLEKLTVCHCPEISGL 110 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccC-----------CCCCCCcEEEccCCCCcccCC-chh-----hhhhhheEccCccccccc
Confidence 445677778877777666542 112468888888888774321 111 458888888888777655
Q ss_pred cccCCCccEEeccccccccccccccccccEEeccccccccc---ccccccCCcEEEecCCCCccccccCc-ccccEEEec
Q 004729 627 RFCSTSLVSLSLVGCRAITALELKCPILEKVCLDGCDHIES---ASFVPVALQSLNLGICPKLSTLGIEA-LHMVVLELK 702 (733)
Q Consensus 627 ~~~~~sL~~L~L~~c~~L~~l~~~~p~L~~L~L~~c~~L~~---~~~~~~~L~~L~L~~c~~L~~l~~~~-~~L~~L~l~ 702 (733)
+ .+|+.|.+.+ ..+..+..-.++|++|.+.++..... ....|.+|++|.+++|..+. +|... ..|+.|.+.
T Consensus 111 P---~sLe~L~L~~-n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~-LP~~LP~SLk~L~ls 185 (426)
T PRK15386 111 P---ESVRSLEIKG-SATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNII-LPEKLPESLQSITLH 185 (426)
T ss_pred c---cccceEEeCC-CCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCccc-CcccccccCcEEEec
Confidence 3 5677777753 33323322224677787754332211 12457788899988887553 34322 368888886
Q ss_pred CCC--CCCccCCCCC-CccEEeccCccccc
Q 004729 703 GCG--VLSDAYINCP-LLTSLDASFCRCVA 729 (733)
Q Consensus 703 ~c~--~L~~~~~~~p-~L~~L~l~~C~~L~ 729 (733)
.+. .+.-....+| ++ .|++.+|-.+.
T Consensus 186 ~n~~~sLeI~~~sLP~nl-~L~f~n~lkL~ 214 (426)
T PRK15386 186 IEQKTTWNISFEGFPDGL-DIDLQNSVLLS 214 (426)
T ss_pred ccccccccCccccccccc-EechhhhcccC
Confidence 643 2222223443 56 77777775543
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=98.02 E-value=3.8e-06 Score=80.26 Aligned_cols=100 Identities=22% Similarity=0.373 Sum_probs=35.4
Q ss_pred CccEEEEcCCCchhHHHHHHhh-cCCCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEE
Q 004729 288 NATEVNIYGAPAIHLLVMKAVS-LLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLE 366 (733)
Q Consensus 288 ~L~~L~L~~~~~~~~~~~~~l~-~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~ 366 (733)
+++.|++.+. .+... ..++ .+.+|+.|+|++|.+.. ...+..+++|++|++++|.+......+...+++|++|.
T Consensus 20 ~~~~L~L~~n-~I~~I--e~L~~~l~~L~~L~Ls~N~I~~--l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 20 KLRELNLRGN-QISTI--ENLGATLDKLEVLDLSNNQITK--LEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELY 94 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT--EEE
T ss_pred cccccccccc-ccccc--cchhhhhcCCCEEECCCCCCcc--ccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEE
Confidence 4678888873 33332 3344 57899999999998874 34566789999999999998865444445789999999
Q ss_pred eeccccchhc-----ccCCCCcEEEEcCCch
Q 004729 367 ITKCRVMRVS-----IRCPQLEHLSLKRSNM 392 (733)
Q Consensus 367 L~~~~~~~i~-----~~~~~L~~L~L~~~~l 392 (733)
+.+|.+..+. ..+|+|+.|+|.+|.+
T Consensus 95 L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv 125 (175)
T PF14580_consen 95 LSNNKISDLNELEPLSSLPKLRVLSLEGNPV 125 (175)
T ss_dssp -TTS---SCCCCGGGGG-TT--EEE-TT-GG
T ss_pred CcCCcCCChHHhHHHHcCCCcceeeccCCcc
Confidence 9999765322 3455555555555544
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=98.01 E-value=1.5e-05 Score=85.45 Aligned_cols=133 Identities=20% Similarity=0.306 Sum_probs=97.4
Q ss_pred cCCCCcEEeecCCCCCChhhhhhhcCCCCCCCccEEEeecCCCCccccc-cCCCccEEeccccccccccccccccccEEe
Q 004729 580 QCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRF-CSTSLVSLSLVGCRAITALELKCPILEKVC 658 (733)
Q Consensus 580 ~~~~L~~L~Ls~C~~lt~~~~~~~~~~~~l~~L~~L~L~~c~~L~~~~~-~~~sL~~L~L~~c~~L~~l~~~~p~L~~L~ 658 (733)
.|++++.|++++| .++. ++ .-.++|++|.+.+|..++.++. .+.+|++|.+++|..+..++ ++|++|+
T Consensus 50 ~~~~l~~L~Is~c-~L~s-----LP--~LP~sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~Cs~L~sLP---~sLe~L~ 118 (426)
T PRK15386 50 EARASGRLYIKDC-DIES-----LP--VLPNELTEITIENCNNLTTLPGSIPEGLEKLTVCHCPEISGLP---ESVRSLE 118 (426)
T ss_pred HhcCCCEEEeCCC-CCcc-----cC--CCCCCCcEEEccCCCCcccCCchhhhhhhheEccCcccccccc---cccceEE
Confidence 5799999999998 5653 33 2245799999999999988774 56799999999998888766 5688888
Q ss_pred cccccccccccccccCCcEEEecCCCCc--ccccc-CcccccEEEecCCCCCCccCCCCC-CccEEeccCc
Q 004729 659 LDGCDHIESASFVPVALQSLNLGICPKL--STLGI-EALHMVVLELKGCGVLSDAYINCP-LLTSLDASFC 725 (733)
Q Consensus 659 L~~c~~L~~~~~~~~~L~~L~L~~c~~L--~~l~~-~~~~L~~L~l~~c~~L~~~~~~~p-~L~~L~l~~C 725 (733)
+.+ ..+..+...|.+|+.|.+..+... ..++. -..+|+.|.+.+|..+.. ....| +|+.|.++.+
T Consensus 119 L~~-n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~L-P~~LP~SLk~L~ls~n 187 (426)
T PRK15386 119 IKG-SATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNIIL-PEKLPESLQSITLHIE 187 (426)
T ss_pred eCC-CCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCcccC-cccccccCcEEEeccc
Confidence 864 566666778889999998543322 11221 124799999999997642 22344 8999998765
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.00 E-value=3e-06 Score=84.59 Aligned_cols=186 Identities=18% Similarity=0.208 Sum_probs=110.1
Q ss_pred cCCCCCEEEecCccCCh--HHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEEeeccccchhcccCCCCcEEEE
Q 004729 310 LLRNLEALTLGRGQLGD--AFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIRCPQLEHLSL 387 (733)
Q Consensus 310 ~l~~L~~L~Ls~~~i~~--~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~i~~~~~~L~~L~L 387 (733)
.+.+++++||.+|.+++ .....+.++|.|++|+|+.|++...+........+|+.|-|.+..+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L--------------- 133 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGL--------------- 133 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCC---------------
Confidence 66788888888888874 3455567788888888888888777766665667777777766542
Q ss_pred cCCchHHHhhCCCCccEEEEecCC----CCChHHHHHHHhcCCCCcEEeccCCCCCChhHHHHHHHhcccccccccccCC
Q 004729 388 KRSNMAQAVLNCPLLHLLDIASCH----KLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCP 463 (733)
Q Consensus 388 ~~~~l~~~~~~~~~L~~L~L~~c~----~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~ 463 (733)
.+.....++..+|.++.|.++... ++.+..... --+.++.|++..|....-.....+...+|++..+-+..|+
T Consensus 134 ~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~---~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~P 210 (418)
T KOG2982|consen 134 SWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIED---WSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGP 210 (418)
T ss_pred Chhhhhhhhhcchhhhhhhhccchhhhhccccccccc---cchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCc
Confidence 122222334444444444443310 111111111 1135566666666522222344455567888888877775
Q ss_pred CCCc----CCCCCCCccEEEeCCCCCCch-HHHHHhhCCCCcCEEEEecCCCCccc
Q 004729 464 NISL----ESVRLPMLTVLQLHSCEGITS-ASMAAISHSYMLEVLELDNCNLLTSV 514 (733)
Q Consensus 464 ~l~~----~~~~l~~L~~L~L~~c~~l~~-~~~~~l~~~~~L~~L~L~~~~~l~~~ 514 (733)
.-+. .+-.+|.+--|++.. +.+.+ +.+..+..++.|..|.+.+++....+
T Consensus 211 lK~~s~ek~se~~p~~~~LnL~~-~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l 265 (418)
T KOG2982|consen 211 LKTESSEKGSEPFPSLSCLNLGA-NNIDSWASVDALNGFPQLVDLRVSENPLSDPL 265 (418)
T ss_pred ccchhhcccCCCCCcchhhhhcc-cccccHHHHHHHcCCchhheeeccCCcccccc
Confidence 2211 122466666777776 44544 44567888999999999887655443
|
|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.93 E-value=4.7e-08 Score=89.63 Aligned_cols=60 Identities=22% Similarity=0.282 Sum_probs=33.2
Q ss_pred cCCCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEEeeccc
Q 004729 310 LLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCR 371 (733)
Q Consensus 310 ~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~ 371 (733)
.+.+++.|.|++|.++ ..++.+..+.+|+.|++.+|++.. ++.-...+++|++|++.-++
T Consensus 31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie~-lp~~issl~klr~lnvgmnr 90 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIEE-LPTSISSLPKLRILNVGMNR 90 (264)
T ss_pred chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhhh-cChhhhhchhhhheecchhh
Confidence 3445666677777666 444555666666666666665542 22223345555555554443
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.88 E-value=6e-06 Score=82.47 Aligned_cols=120 Identities=20% Similarity=0.271 Sum_probs=79.9
Q ss_pred cccCcCCceeeeccCccccccccccccHHHHHhcCCCCcEEeecCCCCCChhhhhhhcCCCCCCCccEEEeecCCCCccc
Q 004729 547 VSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVV 626 (733)
Q Consensus 547 l~~c~~L~~L~l~~n~L~~l~~~~~~~L~~l~~~~~~L~~L~Ls~C~~lt~~~~~~~~~~~~l~~L~~L~L~~c~~L~~~ 626 (733)
+..+..|+.+++++|.++.+ ++++. ..|.++.|+++. +.++.. ..++.+++|+.|+|+++. +..+
T Consensus 280 ~dTWq~LtelDLS~N~I~~i----DESvK----L~Pkir~L~lS~-N~i~~v-----~nLa~L~~L~~LDLS~N~-Ls~~ 344 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLITQI----DESVK----LAPKLRRLILSQ-NRIRTV-----QNLAELPQLQLLDLSGNL-LAEC 344 (490)
T ss_pred cchHhhhhhccccccchhhh----hhhhh----hccceeEEeccc-cceeee-----hhhhhcccceEeecccch-hHhh
Confidence 45566788899999988765 34444 567999999998 566532 223568899999998863 3333
Q ss_pred ---cccCCCccEEecccccccccccc--ccccccEEeccccccccc------ccccccCCcEEEecCCC
Q 004729 627 ---RFCSTSLVSLSLVGCRAITALEL--KCPILEKVCLDGCDHIES------ASFVPVALQSLNLGICP 684 (733)
Q Consensus 627 ---~~~~~sL~~L~L~~c~~L~~l~~--~~p~L~~L~L~~c~~L~~------~~~~~~~L~~L~L~~c~ 684 (733)
-..+.+++.|.+++ +.|+++.. .+-+|+.|++++ ++++. +|..| -|+++.+.+.|
T Consensus 345 ~Gwh~KLGNIKtL~La~-N~iE~LSGL~KLYSLvnLDl~~-N~Ie~ldeV~~IG~LP-CLE~l~L~~NP 410 (490)
T KOG1259|consen 345 VGWHLKLGNIKTLKLAQ-NKIETLSGLRKLYSLVNLDLSS-NQIEELDEVNHIGNLP-CLETLRLTGNP 410 (490)
T ss_pred hhhHhhhcCEeeeehhh-hhHhhhhhhHhhhhheeccccc-cchhhHHHhccccccc-HHHHHhhcCCC
Confidence 33788888888888 56776663 577888888888 44332 22222 45555555554
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.81 E-value=3.4e-05 Score=89.49 Aligned_cols=153 Identities=22% Similarity=0.333 Sum_probs=113.9
Q ss_pred cCCCCCEEEecCc-cCChHHHHhccC-CCCCcEEEEecCcCC-cccccccccCCCccEEEeeccccchh--cccCCCCcE
Q 004729 310 LLRNLEALTLGRG-QLGDAFFHALAD-CSMLKSLNVNDATLG-NGVQEIPINHDQLRRLEITKCRVMRV--SIRCPQLEH 384 (733)
Q Consensus 310 ~l~~L~~L~Ls~~-~i~~~~~~~L~~-~~~L~~L~L~~~~l~-~~~~~~~~~~~~L~~L~L~~~~~~~i--~~~~~~L~~ 384 (733)
.-.+|++|++++. .+...++..++. +|+|++|.+.+..+. +....+..+||+|..||++++++..+ ..++++|+.
T Consensus 120 sr~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~ 199 (699)
T KOG3665|consen 120 SRQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQV 199 (699)
T ss_pred HHHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHH
Confidence 4568999999875 455567777765 799999999987754 44667788999999999999987654 357888888
Q ss_pred EEEcCCchHH-----HhhCCCCccEEEEecCCCCChHHH-H---HHHhcCCCCcEEeccCCCCCChhHHHHHHHhccccc
Q 004729 385 LSLKRSNMAQ-----AVLNCPLLHLLDIASCHKLSDAAI-R---LAATSCPQLESLDMSNCSCVSDESLREIALSCANLR 455 (733)
Q Consensus 385 L~L~~~~l~~-----~~~~~~~L~~L~L~~c~~l~~~~l-~---~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~ 455 (733)
|.+.+-.+.. .+-++++|+.|+++.-.......+ . .....+|+|+.|+.++.. ++...+..+...-|+|+
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTd-i~~~~le~ll~sH~~L~ 278 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTD-INEEILEELLNSHPNLQ 278 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcc-hhHHHHHHHHHhCccHh
Confidence 8888754442 355799999999998444333311 1 122347999999999877 88888888888888888
Q ss_pred ccccccCC
Q 004729 456 ILNSSYCP 463 (733)
Q Consensus 456 ~L~L~~~~ 463 (733)
.+.+-+|.
T Consensus 279 ~i~~~~~~ 286 (699)
T KOG3665|consen 279 QIAALDCL 286 (699)
T ss_pred hhhhhhhh
Confidence 88766543
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.77 E-value=3.8e-05 Score=89.15 Aligned_cols=83 Identities=24% Similarity=0.254 Sum_probs=43.5
Q ss_pred HhhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCCCCCChhHHHHHHHhcccccccccccCCCCCc----CCC
Q 004729 395 AVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNISL----ESV 470 (733)
Q Consensus 395 ~~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~----~~~ 470 (733)
+...+|.|+.|.+.+ ..+....+..+..++|+|..||++++. +++. .-..++++|+.|.+.+-..... ...
T Consensus 143 ig~~LPsL~sL~i~~-~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl---~GIS~LknLq~L~mrnLe~e~~~~l~~LF 217 (699)
T KOG3665|consen 143 IGTMLPSLRSLVISG-RQFDNDDFSQLCASFPNLRSLDISGTN-ISNL---SGISRLKNLQVLSMRNLEFESYQDLIDLF 217 (699)
T ss_pred HhhhCcccceEEecC-ceecchhHHHHhhccCccceeecCCCC-ccCc---HHHhccccHHHHhccCCCCCchhhHHHHh
Confidence 344566666666666 334444455666666666666666655 3332 1112455666666554332221 223
Q ss_pred CCCCccEEEeCC
Q 004729 471 RLPMLTVLQLHS 482 (733)
Q Consensus 471 ~l~~L~~L~L~~ 482 (733)
.+.+|+.|+++.
T Consensus 218 ~L~~L~vLDIS~ 229 (699)
T KOG3665|consen 218 NLKKLRVLDISR 229 (699)
T ss_pred cccCCCeeeccc
Confidence 556666666665
|
|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.70 E-value=1.2e-06 Score=80.68 Aligned_cols=159 Identities=19% Similarity=0.238 Sum_probs=93.9
Q ss_pred CCCCCcEEEEecCcCCcccccccccCCCccEEEeeccccchhcccCCCCcEEEEcCCchHHHhhCCCCccEEEEecCCCC
Q 004729 334 DCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIRCPQLEHLSLKRSNMAQAVLNCPLLHLLDIASCHKL 413 (733)
Q Consensus 334 ~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~i~~~~~~L~~L~L~~~~l~~~~~~~~~L~~L~L~~c~~l 413 (733)
.+.+++.|.|++|.++...+ -+..+.+|+.|++.++.+..++. .++.+|+|+.|+++- +.+
T Consensus 31 ~~s~ITrLtLSHNKl~~vpp-nia~l~nlevln~~nnqie~lp~-----------------~issl~klr~lnvgm-nrl 91 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLTVVPP-NIAELKNLEVLNLSNNQIEELPT-----------------SISSLPKLRILNVGM-NRL 91 (264)
T ss_pred chhhhhhhhcccCceeecCC-cHHHhhhhhhhhcccchhhhcCh-----------------hhhhchhhhheecch-hhh
Confidence 45666777777776653322 23345556666655554443332 234455566665553 222
Q ss_pred ChHHHHHHHhcCCCCcEEeccCCCCCChhHHHHHHHhcccccccccccCC--CCCcCCCCCCCccEEEeCCCCCCchHHH
Q 004729 414 SDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCP--NISLESVRLPMLTVLQLHSCEGITSASM 491 (733)
Q Consensus 414 ~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~--~l~~~~~~l~~L~~L~L~~c~~l~~~~~ 491 (733)
. .++.-+..+|.|+.|++..+. +....++--+-.+..|+-|.++++. .++...+++.+|+.|.+.... +- ...
T Consensus 92 ~--~lprgfgs~p~levldltynn-l~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdnd-ll-~lp 166 (264)
T KOG0617|consen 92 N--ILPRGFGSFPALEVLDLTYNN-LNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDND-LL-SLP 166 (264)
T ss_pred h--cCccccCCCchhhhhhccccc-cccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCc-hh-hCc
Confidence 1 123344566777777777655 5554444333356677778887765 455666788888888887732 22 233
Q ss_pred HHhhCCCCcCEEEEecCCCCcccccC
Q 004729 492 AAISHSYMLEVLELDNCNLLTSVSLE 517 (733)
Q Consensus 492 ~~l~~~~~L~~L~L~~~~~l~~~~~~ 517 (733)
..++.+..|++|+|.++. ++.+|..
T Consensus 167 keig~lt~lrelhiqgnr-l~vlppe 191 (264)
T KOG0617|consen 167 KEIGDLTRLRELHIQGNR-LTVLPPE 191 (264)
T ss_pred HHHHHHHHHHHHhcccce-eeecChh
Confidence 567778889999999884 5555543
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00088 Score=66.58 Aligned_cols=88 Identities=18% Similarity=0.333 Sum_probs=59.2
Q ss_pred hCCCccEEEEcCCCchhHH----HHHHhhcCCCCCEEEecCcc---CChH-------HHHhccCCCCCcEEEEecCcCCc
Q 004729 285 RYPNATEVNIYGAPAIHLL----VMKAVSLLRNLEALTLGRGQ---LGDA-------FFHALADCSMLKSLNVNDATLGN 350 (733)
Q Consensus 285 ~~~~L~~L~L~~~~~~~~~----~~~~l~~l~~L~~L~Ls~~~---i~~~-------~~~~L~~~~~L~~L~L~~~~l~~ 350 (733)
....++.++++|.. +..- ....++.-.+|+...++.-. ..+. +.+.+-+||+|+..+|++|.++.
T Consensus 28 ~~d~~~evdLSGNt-igtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~ 106 (388)
T COG5238 28 MMDELVEVDLSGNT-IGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS 106 (388)
T ss_pred hhcceeEEeccCCc-ccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence 36678888888843 3332 33445566778888776532 2222 34456689999999999998775
Q ss_pred cc----ccccccCCCccEEEeeccccc
Q 004729 351 GV----QEIPINHDQLRRLEITKCRVM 373 (733)
Q Consensus 351 ~~----~~~~~~~~~L~~L~L~~~~~~ 373 (733)
.. ..++.....|++|.+++|.+.
T Consensus 107 ~~~e~L~d~is~~t~l~HL~l~NnGlG 133 (388)
T COG5238 107 EFPEELGDLISSSTDLVHLKLNNNGLG 133 (388)
T ss_pred ccchHHHHHHhcCCCceeEEeecCCCC
Confidence 43 345567788889988888754
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.62 E-value=7.8e-05 Score=74.78 Aligned_cols=182 Identities=13% Similarity=0.106 Sum_probs=116.4
Q ss_pred HHHHHHhhCCCccEEEEcCCCchhHH--HHHHhhcCCCCCEEEecCccCChHHHHhc-cCCCCCcEEEEecCcCC-cccc
Q 004729 278 QFEDVCQRYPNATEVNIYGAPAIHLL--VMKAVSLLRNLEALTLGRGQLGDAFFHAL-ADCSMLKSLNVNDATLG-NGVQ 353 (733)
Q Consensus 278 ~l~~~~~~~~~L~~L~L~~~~~~~~~--~~~~l~~l~~L~~L~Ls~~~i~~~~~~~L-~~~~~L~~L~L~~~~l~-~~~~ 353 (733)
.+..+...+..++.+++.+ +.+.++ +...+.++|+|+.|+|+.|.+... ...+ ....+|++|-|.+..+. ....
T Consensus 62 d~~~~~~~~~~v~elDL~~-N~iSdWseI~~ile~lP~l~~LNls~N~L~s~-I~~lp~p~~nl~~lVLNgT~L~w~~~~ 139 (418)
T KOG2982|consen 62 DVMLFGSSVTDVKELDLTG-NLISDWSEIGAILEQLPALTTLNLSCNSLSSD-IKSLPLPLKNLRVLVLNGTGLSWTQST 139 (418)
T ss_pred hHHHHHHHhhhhhhhhccc-chhccHHHHHHHHhcCccceEeeccCCcCCCc-cccCcccccceEEEEEcCCCCChhhhh
Confidence 4455555667788888877 334333 344556889999999998877632 2222 35678888888887654 2344
Q ss_pred cccccCCCccEEEeeccccch-------hcccCCCCcEEEEcCCchHH------HhhCCCCccEEEEecCCCCChHHHHH
Q 004729 354 EIPINHDQLRRLEITKCRVMR-------VSIRCPQLEHLSLKRSNMAQ------AVLNCPLLHLLDIASCHKLSDAAIRL 420 (733)
Q Consensus 354 ~~~~~~~~L~~L~L~~~~~~~-------i~~~~~~L~~L~L~~~~l~~------~~~~~~~L~~L~L~~c~~l~~~~l~~ 420 (733)
.+...+|.+++|.++.|+... +....+.+++|++..|.... +..-||++..+.+..|+ +.+..-..
T Consensus 140 s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~P-lK~~s~ek 218 (418)
T KOG2982|consen 140 SSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGP-LKTESSEK 218 (418)
T ss_pred hhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCc-ccchhhcc
Confidence 556677888888888775432 22334567777776665443 34568889888888875 44443334
Q ss_pred HHhcCCCCcEEeccCCCCCChhHHHHHHHhcccccccccccCC
Q 004729 421 AATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCP 463 (733)
Q Consensus 421 l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~ 463 (733)
-...+|.+.-|++.... +.+..-..-...++.|..|.+...+
T Consensus 219 ~se~~p~~~~LnL~~~~-idswasvD~Ln~f~~l~dlRv~~~P 260 (418)
T KOG2982|consen 219 GSEPFPSLSCLNLGANN-IDSWASVDALNGFPQLVDLRVSENP 260 (418)
T ss_pred cCCCCCcchhhhhcccc-cccHHHHHHHcCCchhheeeccCCc
Confidence 44556777777887765 5444333333478888888888766
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0007 Score=67.28 Aligned_cols=87 Identities=22% Similarity=0.347 Sum_probs=57.2
Q ss_pred eeEEeeCCCCCCHHHHHHHHh---hCCCccEEEEcCCC--chh-------HHHHHHhhcCCCCCEEEecCccCChHHHH-
Q 004729 264 WRCLNFENRKISVEQFEDVCQ---RYPNATEVNIYGAP--AIH-------LLVMKAVSLLRNLEALTLGRGQLGDAFFH- 330 (733)
Q Consensus 264 w~~l~l~~~~~~~~~l~~~~~---~~~~L~~L~L~~~~--~~~-------~~~~~~l~~l~~L~~L~Ls~~~i~~~~~~- 330 (733)
...++++...+..+....++. ...+++..+++... ... ....+++..||+|+.++|+.|.|+..++.
T Consensus 32 ~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~ 111 (388)
T COG5238 32 LVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEE 111 (388)
T ss_pred eeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccchH
Confidence 346777777776665555444 33445555554311 111 12345677999999999999988755444
Q ss_pred ---hccCCCCCcEEEEecCcCCc
Q 004729 331 ---ALADCSMLKSLNVNDATLGN 350 (733)
Q Consensus 331 ---~L~~~~~L~~L~L~~~~l~~ 350 (733)
.+++...|++|.+++|.+++
T Consensus 112 L~d~is~~t~l~HL~l~NnGlGp 134 (388)
T COG5238 112 LGDLISSSTDLVHLKLNNNGLGP 134 (388)
T ss_pred HHHHHhcCCCceeEEeecCCCCc
Confidence 45678999999999998764
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=97.53 E-value=4.9e-05 Score=59.31 Aligned_cols=60 Identities=22% Similarity=0.299 Sum_probs=40.9
Q ss_pred CCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEEeeccc
Q 004729 312 RNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCR 371 (733)
Q Consensus 312 ~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~ 371 (733)
|+|++|++++|.+.......+..+++|++|++++|.+....+..+..+++|++|++++|.
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 467777777777765444566677777777777777665555566667777777766654
|
... |
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.46 E-value=3.3e-05 Score=77.32 Aligned_cols=78 Identities=14% Similarity=0.216 Sum_probs=42.5
Q ss_pred CCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEEeeccccchhc---ccCCCCcEEEEc
Q 004729 312 RNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVS---IRCPQLEHLSLK 388 (733)
Q Consensus 312 ~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~i~---~~~~~L~~L~L~ 388 (733)
+.|+++||++|.|+ .+-.++.-.|.++.|+++.|.+... .. ...+++|++|++++|.+..+. ..+.+++.|.|.
T Consensus 284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v-~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV-QN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLA 360 (490)
T ss_pred hhhhhccccccchh-hhhhhhhhccceeEEeccccceeee-hh-hhhcccceEeecccchhHhhhhhHhhhcCEeeeehh
Confidence 45677788777766 3344445567777777777765421 11 345566666666665443322 223444444444
Q ss_pred CCch
Q 004729 389 RSNM 392 (733)
Q Consensus 389 ~~~l 392 (733)
+|.+
T Consensus 361 ~N~i 364 (490)
T KOG1259|consen 361 QNKI 364 (490)
T ss_pred hhhH
Confidence 4433
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.00077 Score=74.23 Aligned_cols=166 Identities=23% Similarity=0.229 Sum_probs=84.9
Q ss_pred CCCCcEEEEecCcCCcccccccccC-CCccEEEeeccccchh---cccCCCCcEEEEcCCchHHHhh---CCCCccEEEE
Q 004729 335 CSMLKSLNVNDATLGNGVQEIPINH-DQLRRLEITKCRVMRV---SIRCPQLEHLSLKRSNMAQAVL---NCPLLHLLDI 407 (733)
Q Consensus 335 ~~~L~~L~L~~~~l~~~~~~~~~~~-~~L~~L~L~~~~~~~i---~~~~~~L~~L~L~~~~l~~~~~---~~~~L~~L~L 407 (733)
.+.++.|.+.++.+... +...... .+|+.|++.++.+..+ ...+++|+.|.+++|.+..+.. ..++|+.|.+
T Consensus 115 ~~~l~~L~l~~n~i~~i-~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~l 193 (394)
T COG4886 115 LTNLTSLDLDNNNITDI-PPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDL 193 (394)
T ss_pred ccceeEEecCCcccccC-ccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheec
Confidence 35566666665554422 2222233 2566666666665554 2456666666666666655433 5666666666
Q ss_pred ecCCCCChHHHHHHHhcCCCCcEEeccCCCCCChhHHHHHHHhcccccccccccCCCCC--cCCCCCCCccEEEeCCCCC
Q 004729 408 ASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNIS--LESVRLPMLTVLQLHSCEG 485 (733)
Q Consensus 408 ~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~--~~~~~l~~L~~L~L~~c~~ 485 (733)
++ ..+.+.. ........|++|.+.++..+.. ......+.++..+.+....... .....+++|+.|++.+ +.
T Consensus 194 s~-N~i~~l~--~~~~~~~~L~~l~~~~N~~~~~---~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~-n~ 266 (394)
T COG4886 194 SG-NKISDLP--PEIELLSALEELDLSNNSIIEL---LSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSN-NQ 266 (394)
T ss_pred cC-CccccCc--hhhhhhhhhhhhhhcCCcceec---chhhhhcccccccccCCceeeeccchhccccccceecccc-cc
Confidence 66 3344322 2212233466666666531211 1112244555555544433222 3333556677777766 34
Q ss_pred CchHHHHHhhCCCCcCEEEEecCCC
Q 004729 486 ITSASMAAISHSYMLEVLELDNCNL 510 (733)
Q Consensus 486 l~~~~~~~l~~~~~L~~L~L~~~~~ 510 (733)
+.+... ++...+|+.|+++++..
T Consensus 267 i~~i~~--~~~~~~l~~L~~s~n~~ 289 (394)
T COG4886 267 ISSISS--LGSLTNLRELDLSGNSL 289 (394)
T ss_pred cccccc--ccccCccCEEeccCccc
Confidence 444433 55666777777766543
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0008 Score=52.40 Aligned_cols=55 Identities=20% Similarity=0.288 Sum_probs=38.4
Q ss_pred CCCcEEEEecCcCCcccccccccCCCccEEEeeccccchhc----ccCCCCcEEEEcCC
Q 004729 336 SMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVS----IRCPQLEHLSLKRS 390 (733)
Q Consensus 336 ~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~i~----~~~~~L~~L~L~~~ 390 (733)
|+|++|++++|.+.......+..+++|++|++++|.+..+. ..+++|+.|++++|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 57889999988877666667778888888888888765443 34455555555544
|
... |
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0013 Score=76.44 Aligned_cols=84 Identities=14% Similarity=0.228 Sum_probs=65.4
Q ss_pred ccEEEEcCCCchhHHHHHHhhcCCCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEEee
Q 004729 289 ATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEIT 368 (733)
Q Consensus 289 L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~ 368 (733)
++.|+|.+ ..+....+..+..+++|+.|+|++|.+...++..+..+++|+.|+|++|.+...++.....+++|+.|+|+
T Consensus 420 v~~L~L~~-n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 420 IDGLGLDN-QGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEECCC-CCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 66777776 34455556677788888888888888877777778888888888888888887777777788888888888
Q ss_pred ccccc
Q 004729 369 KCRVM 373 (733)
Q Consensus 369 ~~~~~ 373 (733)
+|.+.
T Consensus 499 ~N~l~ 503 (623)
T PLN03150 499 GNSLS 503 (623)
T ss_pred CCccc
Confidence 87653
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0017 Score=61.97 Aligned_cols=96 Identities=21% Similarity=0.347 Sum_probs=64.9
Q ss_pred CCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEEeeccccchhc-----ccCCCCcEEE
Q 004729 312 RNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVS-----IRCPQLEHLS 386 (733)
Q Consensus 312 ~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~i~-----~~~~~L~~L~ 386 (733)
.+...+||++|.+.. ...|..+++|.+|.|.+|.++...+.+...+++|+.|.+.+|++..+. ..||+|++|.
T Consensus 42 d~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred cccceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 456678888776642 344556788888888888887777777777788888888887766443 4567777777
Q ss_pred EcCCchHHH-------hhCCCCccEEEEec
Q 004729 387 LKRSNMAQA-------VLNCPLLHLLDIAS 409 (733)
Q Consensus 387 L~~~~l~~~-------~~~~~~L~~L~L~~ 409 (733)
+-+|.+..- +..+|+|+.|++..
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehhh
Confidence 766665532 34456666666555
|
|
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.0018 Score=61.88 Aligned_cols=67 Identities=25% Similarity=0.411 Sum_probs=58.5
Q ss_pred hhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCCCCCChhHHHHHHHhcccccccccccCC
Q 004729 396 VLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCP 463 (733)
Q Consensus 396 ~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~ 463 (733)
+..++.++.|.+.+|..+.+.++..+..-.++|+.|+|++|..||+.++.-+. .+++|+.|.+.+-+
T Consensus 121 L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~-~lknLr~L~l~~l~ 187 (221)
T KOG3864|consen 121 LRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLL-KLKNLRRLHLYDLP 187 (221)
T ss_pred HhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHH-HhhhhHHHHhcCch
Confidence 56778899999999999999999888887899999999999999999988776 78888888887654
|
|
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.00077 Score=64.39 Aligned_cols=63 Identities=21% Similarity=0.335 Sum_probs=46.8
Q ss_pred cCCCCcEEeecCCCCCChhhhhhhcCCCCCCCccEEEeecCCCCccccc----cCCCccEEeccccccc
Q 004729 580 QCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRF----CSTSLVSLSLVGCRAI 644 (733)
Q Consensus 580 ~~~~L~~L~Ls~C~~lt~~~~~~~~~~~~l~~L~~L~L~~c~~L~~~~~----~~~sL~~L~L~~c~~L 644 (733)
.++.++.|.+.+|..+.|..++.+. +..|+|+.|+|++|+.|++.+. .+++|+.|.|.+.+.+
T Consensus 123 ~l~~i~~l~l~~ck~~dD~~L~~l~--~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~v 189 (221)
T KOG3864|consen 123 DLRSIKSLSLANCKYFDDWCLERLG--GLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPYV 189 (221)
T ss_pred ccchhhhheeccccchhhHHHHHhc--ccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchhh
Confidence 5678888888888888888777764 4677888888888888888764 5677777777665443
|
|
| >KOG2997 consensus F-box protein FBX9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.0012 Score=66.74 Aligned_cols=44 Identities=27% Similarity=0.571 Sum_probs=39.5
Q ss_pred ccCCCHHHHHHHHhc-----CChhhHHHHHHHHHHHHHhhcCCCCeeEE
Q 004729 224 RMDLTDDLLHMVFSF-----LDYVDLCRAAIVCRQWRAASAHEDFWRCL 267 (733)
Q Consensus 224 ~~~LP~ElL~~If~~-----L~~~dl~~~~lVck~W~~l~~~~~lw~~l 267 (733)
+.+||||||..||.. |+.+++.++++|||.|+..+.+|.+|+..
T Consensus 107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~a 155 (366)
T KOG2997|consen 107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLA 155 (366)
T ss_pred hhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHH
Confidence 679999999999975 45689999999999999999999999853
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.0066 Score=70.76 Aligned_cols=59 Identities=14% Similarity=0.197 Sum_probs=42.7
Q ss_pred CCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEEeecccc
Q 004729 314 LEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRV 372 (733)
Q Consensus 314 L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~~ 372 (733)
++.|+|+++.+...++..+..+++|+.|+|++|.+...++.....+++|+.|+|++|.+
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~l 478 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSF 478 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCC
Confidence 66778888877777777777788888888888877766665566666666666666643
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.0019 Score=65.69 Aligned_cols=51 Identities=24% Similarity=0.606 Sum_probs=46.5
Q ss_pred CcccccccCCC----HHHHHHHHhcCChhhHHHHHHHHHHHHHhhcCCCCeeEEe
Q 004729 218 TEDLEIRMDLT----DDLLHMVFSFLDYVDLCRAAIVCRQWRAASAHEDFWRCLN 268 (733)
Q Consensus 218 ~~~~~~~~~LP----~ElL~~If~~L~~~dl~~~~lVck~W~~l~~~~~lw~~l~ 268 (733)
.-..|++..|| +++.+.||+||+..+++.|.+|||+|+++..++.+|+.+-
T Consensus 69 mLqrDFi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~WKkLi 123 (499)
T KOG0281|consen 69 MLQRDFITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGMLWKKLI 123 (499)
T ss_pred HHHHHHHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchHHHHHH
Confidence 34568888999 9999999999999999999999999999999999999764
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.00042 Score=77.40 Aligned_cols=81 Identities=26% Similarity=0.401 Sum_probs=43.1
Q ss_pred CCCccEEEeCCCCCCchHHHHHhhCCCCcCEEEEecCCCCcccccCCCCCcEEEeccccCCcccccccccccee-ecccC
Q 004729 472 LPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAMMLSSI-MVSNC 550 (733)
Q Consensus 472 l~~L~~L~L~~c~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~l~~L~~L~L~~c~~l~~l~l~~~~L~~l-~l~~c 550 (733)
+|.|+.|+|+. +.+++.. .+..++.|++|||+.|. +.. +-.+...+|. +..+.++++.++.+ .+.++
T Consensus 186 l~ale~LnLsh-Nk~~~v~--~Lr~l~~LkhLDlsyN~-L~~-------vp~l~~~gc~-L~~L~lrnN~l~tL~gie~L 253 (1096)
T KOG1859|consen 186 LPALESLNLSH-NKFTKVD--NLRRLPKLKHLDLSYNC-LRH-------VPQLSMVGCK-LQLLNLRNNALTTLRGIENL 253 (1096)
T ss_pred HHHhhhhccch-hhhhhhH--HHHhcccccccccccch-hcc-------ccccchhhhh-heeeeecccHHHhhhhHHhh
Confidence 45666677766 4444443 56667777777777663 222 2223333333 33344444444444 35566
Q ss_pred cCCceeeeccCccc
Q 004729 551 AALHRINITSNSLQ 564 (733)
Q Consensus 551 ~~L~~L~l~~n~L~ 564 (733)
.+|+.|++++|-|.
T Consensus 254 ksL~~LDlsyNll~ 267 (1096)
T KOG1859|consen 254 KSLYGLDLSYNLLS 267 (1096)
T ss_pred hhhhccchhHhhhh
Confidence 66666666666554
|
|
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.0012 Score=73.09 Aligned_cols=170 Identities=23% Similarity=0.218 Sum_probs=78.7
Q ss_pred hhcCCCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEEeeccccchhcccCCCCcEEEE
Q 004729 308 VSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIRCPQLEHLSL 387 (733)
Q Consensus 308 l~~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~i~~~~~~L~~L~L 387 (733)
+..+.+|+.|++.++.+.. ....+..+++|++|++++|.+..... . ..++.|+.|++
T Consensus 91 l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i~~--l--------------------~~l~~L~~L~l 147 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKLEG--L--------------------STLTLLKELNL 147 (414)
T ss_pred cccccceeeeeccccchhh-cccchhhhhcchheeccccccccccc--h--------------------hhccchhhhee
Confidence 4455566666666665542 11113445555666665555442111 1 22334555555
Q ss_pred cCCchHHH--hhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCCCCCChhHHHHHHHhcccccccccccCCCC
Q 004729 388 KRSNMAQA--VLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNI 465 (733)
Q Consensus 388 ~~~~l~~~--~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~~l 465 (733)
.+|.+..+ +..++.|+.++++++ .+....... ...+.+|+.+.+.++.......+.. +..+..+.+..+...
T Consensus 148 ~~N~i~~~~~~~~l~~L~~l~l~~n-~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~~~~----~~~l~~~~l~~n~i~ 221 (414)
T KOG0531|consen 148 SGNLISDISGLESLKSLKLLDLSYN-RIVDIENDE-LSELISLEELDLGGNSIREIEGLDL----LKKLVLLSLLDNKIS 221 (414)
T ss_pred ccCcchhccCCccchhhhcccCCcc-hhhhhhhhh-hhhccchHHHhccCCchhcccchHH----HHHHHHhhcccccce
Confidence 55555544 223667777777774 333322101 3566777777777766322222222 122333333332221
Q ss_pred CcCCC-CCCC--ccEEEeCCCCCCchHHHHHhhCCCCcCEEEEecC
Q 004729 466 SLESV-RLPM--LTVLQLHSCEGITSASMAAISHSYMLEVLELDNC 508 (733)
Q Consensus 466 ~~~~~-~l~~--L~~L~L~~c~~l~~~~~~~l~~~~~L~~L~L~~~ 508 (733)
..... .++. |+.+++.+ +.+.... ..+..+..+..|++.++
T Consensus 222 ~~~~l~~~~~~~L~~l~l~~-n~i~~~~-~~~~~~~~l~~l~~~~n 265 (414)
T KOG0531|consen 222 KLEGLNELVMLHLRELYLSG-NRISRSP-EGLENLKNLPVLDLSSN 265 (414)
T ss_pred eccCcccchhHHHHHHhccc-Ccccccc-ccccccccccccchhhc
Confidence 11111 1222 66666666 3333221 23444555666666554
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.0086 Score=43.08 Aligned_cols=37 Identities=30% Similarity=0.504 Sum_probs=27.4
Q ss_pred CCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCC
Q 004729 312 RNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLG 349 (733)
Q Consensus 312 ~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~ 349 (733)
++|++|++++|.+++ ++..++++++|++|++++|.+.
T Consensus 1 ~~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCC
Confidence 478888888888884 4445788888888888888766
|
... |
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.0018 Score=71.23 Aligned_cols=119 Identities=21% Similarity=0.210 Sum_probs=52.3
Q ss_pred cCCCccEEEeeccccchhcc---cCCCCcEEEEcCCchHHHhh---CCCCccEEEEecCCCCChHHHHHHHhcCCCCcEE
Q 004729 358 NHDQLRRLEITKCRVMRVSI---RCPQLEHLSLKRSNMAQAVL---NCPLLHLLDIASCHKLSDAAIRLAATSCPQLESL 431 (733)
Q Consensus 358 ~~~~L~~L~L~~~~~~~i~~---~~~~L~~L~L~~~~l~~~~~---~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L 431 (733)
.+++|+.|++.+|.+..++. ..++|+.|.++++.+..+-. ...+|++|.+++-..+.. ......+.++..|
T Consensus 161 ~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~---~~~~~~~~~l~~l 237 (394)
T COG4886 161 NLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIEL---LSSLSNLKNLSGL 237 (394)
T ss_pred ccccccccccCCchhhhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcceec---chhhhhccccccc
Confidence 34444444444444444333 34445555555554443322 222355555555211111 1123334445555
Q ss_pred eccCCCCCChhHHHHHHHhcccccccccccCCCCCcC-CCCCCCccEEEeCC
Q 004729 432 DMSNCSCVSDESLREIALSCANLRILNSSYCPNISLE-SVRLPMLTVLQLHS 482 (733)
Q Consensus 432 ~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~-~~~l~~L~~L~L~~ 482 (733)
.+.++. +.+ +......+++|+.|+++++...... .....+|+.|++++
T Consensus 238 ~l~~n~-~~~--~~~~~~~l~~l~~L~~s~n~i~~i~~~~~~~~l~~L~~s~ 286 (394)
T COG4886 238 ELSNNK-LED--LPESIGNLSNLETLDLSNNQISSISSLGSLTNLRELDLSG 286 (394)
T ss_pred ccCCce-eee--ccchhccccccceeccccccccccccccccCccCEEeccC
Confidence 444433 111 1122234455666666655422211 33556677777766
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.023 Score=54.50 Aligned_cols=100 Identities=18% Similarity=0.314 Sum_probs=71.9
Q ss_pred CCCCcEEEEecCcCCcccccccccCCCccEEEeeccccchhcc----cCCCCcEEEEcCCchHHH-----hhCCCCccEE
Q 004729 335 CSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSI----RCPQLEHLSLKRSNMAQA-----VLNCPLLHLL 405 (733)
Q Consensus 335 ~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~i~~----~~~~L~~L~L~~~~l~~~-----~~~~~~L~~L 405 (733)
..+...++|++|.+... ..+..+++|..|.+.+|++.++.. .+|+|+.|.|.+|.+..+ +..||+|++|
T Consensus 41 ~d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL 118 (233)
T ss_pred ccccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCcccee
Confidence 35566788888865421 234578899999999999886654 578899999999988765 5689999999
Q ss_pred EEecCCCCChHHHH--HHHhcCCCCcEEeccCCC
Q 004729 406 DIASCHKLSDAAIR--LAATSCPQLESLDMSNCS 437 (733)
Q Consensus 406 ~L~~c~~l~~~~l~--~l~~~~~~L~~L~L~~~~ 437 (733)
.+-+. .+....-. .++..+|+|+.|++....
T Consensus 119 tll~N-pv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 119 TLLGN-PVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred eecCC-chhcccCceeEEEEecCcceEeehhhhh
Confidence 98873 34333211 244567899999988754
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.00098 Score=74.57 Aligned_cols=40 Identities=28% Similarity=0.388 Sum_probs=20.3
Q ss_pred hhcCCCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCC
Q 004729 308 VSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLG 349 (733)
Q Consensus 308 l~~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~ 349 (733)
+.-++.|+.|+|++|++++. ..+..|++|++|+|+.|.+.
T Consensus 183 Lqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~ 222 (1096)
T KOG1859|consen 183 LQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR 222 (1096)
T ss_pred HHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc
Confidence 33445555555555555432 24445555555555555443
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.33 E-value=0.0039 Score=62.36 Aligned_cols=18 Identities=17% Similarity=0.580 Sum_probs=8.5
Q ss_pred cccCcCCceeeeccCccc
Q 004729 547 VSNCAALHRINITSNSLQ 564 (733)
Q Consensus 547 l~~c~~L~~L~l~~n~L~ 564 (733)
+..|.+|++|.+..|.|.
T Consensus 59 l~rCtrLkElYLRkN~I~ 76 (388)
T KOG2123|consen 59 LQRCTRLKELYLRKNCIE 76 (388)
T ss_pred HHHHHHHHHHHHHhcccc
Confidence 344555555544444443
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=94.21 E-value=0.068 Score=38.42 Aligned_cols=38 Identities=13% Similarity=0.240 Sum_probs=26.3
Q ss_pred CCCcEEEEecCcCCcccccccccCCCccEEEeeccccch
Q 004729 336 SMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMR 374 (733)
Q Consensus 336 ~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~ 374 (733)
++|++|++++|.+.+ ++.....+++|+.|++++|.+..
T Consensus 1 ~~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCCC
Confidence 578899999888874 44445678888888888876543
|
... |
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.90 E-value=0.012 Score=65.35 Aligned_cols=85 Identities=19% Similarity=0.331 Sum_probs=57.1
Q ss_pred HhhCCCccEEEEcCCCchhHHHHHH-hhcCCCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCC
Q 004729 283 CQRYPNATEVNIYGAPAIHLLVMKA-VSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQ 361 (733)
Q Consensus 283 ~~~~~~L~~L~L~~~~~~~~~~~~~-l~~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~ 361 (733)
+..+.++..+++.+ ..+... .. +..+++|++|++++|.|+. ...+..++.|+.|++.+|.+...-. ...+..
T Consensus 91 l~~~~~l~~l~l~~-n~i~~i--~~~l~~~~~L~~L~ls~N~I~~--i~~l~~l~~L~~L~l~~N~i~~~~~--~~~l~~ 163 (414)
T KOG0531|consen 91 LSKLKSLEALDLYD-NKIEKI--ENLLSSLVNLQVLDLSFNKITK--LEGLSTLTLLKELNLSGNLISDISG--LESLKS 163 (414)
T ss_pred cccccceeeeeccc-cchhhc--ccchhhhhcchheecccccccc--ccchhhccchhhheeccCcchhccC--Cccchh
Confidence 34567788888877 333332 22 6789999999999999875 3445567779999999998663211 122666
Q ss_pred ccEEEeeccccch
Q 004729 362 LRRLEITKCRVMR 374 (733)
Q Consensus 362 L~~L~L~~~~~~~ 374 (733)
|+.+++.+|.+..
T Consensus 164 L~~l~l~~n~i~~ 176 (414)
T KOG0531|consen 164 LKLLDLSYNRIVD 176 (414)
T ss_pred hhcccCCcchhhh
Confidence 6677776665543
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=93.82 E-value=0.035 Score=55.44 Aligned_cols=65 Identities=22% Similarity=0.283 Sum_probs=36.5
Q ss_pred cCcCCceeeeccCccccccccccccHHHHHhcCCCCcEEeecCCCCCChhhhhhhcCCCCCCCccEEEeecCC
Q 004729 549 NCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCE 621 (733)
Q Consensus 549 ~c~~L~~L~l~~n~L~~l~~~~~~~L~~l~~~~~~L~~L~Ls~C~~lt~~~~~~~~~~~~l~~L~~L~L~~c~ 621 (733)
.+|+|++|.++.|.+.- .-+|..++..||+|+.|++++ +.+.+ +..+.....+++|..|++.+|.
T Consensus 63 ~Lp~LkkL~lsdn~~~~-----~~~l~vl~e~~P~l~~l~ls~-Nki~~--lstl~pl~~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRV-----SGGLEVLAEKAPNLKVLNLSG-NKIKD--LSTLRPLKELENLKSLDLFNCS 127 (260)
T ss_pred CcchhhhhcccCCcccc-----cccceehhhhCCceeEEeecC-Ccccc--ccccchhhhhcchhhhhcccCC
Confidence 34566666666663321 133445555667777777777 56654 2333334556666666666664
|
|
| >PLN03215 ascorbic acid mannose pathway regulator 1; Provisional | Back alignment and domain information |
|---|
Probab=93.58 E-value=0.065 Score=57.25 Aligned_cols=37 Identities=35% Similarity=0.587 Sum_probs=33.8
Q ss_pred cccCCCHHHHHHHHhcCC-hhhHHHHHHHHHHHHHhhc
Q 004729 223 IRMDLTDDLLHMVFSFLD-YVDLCRAAIVCRQWRAASA 259 (733)
Q Consensus 223 ~~~~LP~ElL~~If~~L~-~~dl~~~~lVck~W~~l~~ 259 (733)
.|++||+|+|..|..+|+ ..|+.+.+.||+.||..+.
T Consensus 3 ~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~ 40 (373)
T PLN03215 3 DWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVS 40 (373)
T ss_pred ChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhcc
Confidence 488999999999999995 7799999999999999765
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.20 E-value=0.02 Score=57.48 Aligned_cols=54 Identities=22% Similarity=0.315 Sum_probs=25.3
Q ss_pred CCCcEEEEecCcCCcccccccccCCCccEEEeeccccchhc--ccCCCCcEEEEcCCc
Q 004729 336 SMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVS--IRCPQLEHLSLKRSN 391 (733)
Q Consensus 336 ~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~i~--~~~~~L~~L~L~~~~ 391 (733)
.+.+.|++.+|.+.+. .+...++.|+.|.|+-|.+..+. ..|.+|++|.|..|.
T Consensus 19 ~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~ 74 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNC 74 (388)
T ss_pred HHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcc
Confidence 4455566655554432 23344555555555555443322 334444444444443
|
|
| >smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily | Back alignment and domain information |
|---|
Probab=93.17 E-value=0.073 Score=33.38 Aligned_cols=23 Identities=30% Similarity=0.720 Sum_probs=20.0
Q ss_pred CCCCcEEeecCCCCCChhhhhhh
Q 004729 581 CQCLQEVDLTDCESLTNSVCEVF 603 (733)
Q Consensus 581 ~~~L~~L~Ls~C~~lt~~~~~~~ 603 (733)
|++|+.|+|++|..+||.++..+
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l 23 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQAL 23 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHH
Confidence 68999999999999999887665
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=92.94 E-value=0.014 Score=63.93 Aligned_cols=126 Identities=24% Similarity=0.289 Sum_probs=77.1
Q ss_pred HHhhcCCCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEEeeccccchhccc---CCCC
Q 004729 306 KAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIR---CPQL 382 (733)
Q Consensus 306 ~~l~~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~i~~~---~~~L 382 (733)
..+..+..|..|+|+.|++. .++..+..|| |+.|-+++|.++....++. ..+.|.+|+.+.|.+..++.. +..|
T Consensus 115 ~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig-~~~tl~~ld~s~nei~slpsql~~l~sl 191 (722)
T KOG0532|consen 115 EAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLTSLPEEIG-LLPTLAHLDVSKNEIQSLPSQLGYLTSL 191 (722)
T ss_pred hhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCccccCCcccc-cchhHHHhhhhhhhhhhchHHhhhHHHH
Confidence 33445556667777777766 4444444444 7788888887775555555 677888888888877766643 3445
Q ss_pred cEEEEcCCchHHHhhC--CCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCCC
Q 004729 383 EHLSLKRSNMAQAVLN--CPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCS 437 (733)
Q Consensus 383 ~~L~L~~~~l~~~~~~--~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~ 437 (733)
+.|.+..|.+..+... .-.|..|+++. +++... +.-+.++..|+.|-|.+++
T Consensus 192 r~l~vrRn~l~~lp~El~~LpLi~lDfSc-Nkis~i--Pv~fr~m~~Lq~l~LenNP 245 (722)
T KOG0532|consen 192 RDLNVRRNHLEDLPEELCSLPLIRLDFSC-NKISYL--PVDFRKMRHLQVLQLENNP 245 (722)
T ss_pred HHHHHhhhhhhhCCHHHhCCceeeeeccc-Cceeec--chhhhhhhhheeeeeccCC
Confidence 5555666655543222 23455666653 556543 3345567777777777766
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=92.94 E-value=0.04 Score=55.09 Aligned_cols=35 Identities=17% Similarity=0.300 Sum_probs=15.3
Q ss_pred cccCCCccEEEeeccccchhc--ccCCCCcEEEEcCC
Q 004729 356 PINHDQLRRLEITKCRVMRVS--IRCPQLEHLSLKRS 390 (733)
Q Consensus 356 ~~~~~~L~~L~L~~~~~~~i~--~~~~~L~~L~L~~~ 390 (733)
...+..|+.|.+.++.+..+. ..+|+|++|.+++|
T Consensus 39 ~d~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn 75 (260)
T KOG2739|consen 39 TDEFVELELLSVINVGLTTLTNFPKLPKLKKLELSDN 75 (260)
T ss_pred cccccchhhhhhhccceeecccCCCcchhhhhcccCC
Confidence 334455555555554433222 12344444444433
|
|
| >smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily | Back alignment and domain information |
|---|
Probab=92.42 E-value=0.15 Score=31.99 Aligned_cols=23 Identities=43% Similarity=1.032 Sum_probs=12.7
Q ss_pred CCCCcEEeccCCCCCChhHHHHH
Q 004729 425 CPQLESLDMSNCSCVSDESLREI 447 (733)
Q Consensus 425 ~~~L~~L~L~~~~~l~~~~l~~l 447 (733)
|++|++|+|++|..++|.++..+
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l 23 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQAL 23 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHH
Confidence 34555555555555555555544
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.34 E-value=0.029 Score=50.55 Aligned_cols=85 Identities=11% Similarity=0.038 Sum_probs=53.4
Q ss_pred ccEEEEcCCCch-hHHHHHHhhcCCCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEEe
Q 004729 289 ATEVNIYGAPAI-HLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEI 367 (733)
Q Consensus 289 L~~L~L~~~~~~-~~~~~~~l~~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L 367 (733)
+..++++.|.-. .......+....+|+..+|++|.+.+-..+.-.+++.++.|++.+|.+.+...+ ...++.|+.|++
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE-~Aam~aLr~lNl 107 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEE-LAAMPALRSLNL 107 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHH-HhhhHHhhhccc
Confidence 455666666532 122334455666777788888877743333334567888888888877755444 556777777777
Q ss_pred eccccch
Q 004729 368 TKCRVMR 374 (733)
Q Consensus 368 ~~~~~~~ 374 (733)
..|++..
T Consensus 108 ~~N~l~~ 114 (177)
T KOG4579|consen 108 RFNPLNA 114 (177)
T ss_pred ccCcccc
Confidence 7776543
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=91.25 E-value=0.013 Score=64.20 Aligned_cols=169 Identities=17% Similarity=0.217 Sum_probs=87.3
Q ss_pred hcCCCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEEeeccccchhcccCCCCcEEEEc
Q 004729 309 SLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIRCPQLEHLSLK 388 (733)
Q Consensus 309 ~~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~i~~~~~~L~~L~L~ 388 (733)
..|-.|+.+.|+.|.+. ..+..+.++..|++|+|+.|++......+. .-- |+.|-++
T Consensus 95 ~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC--~lp--------------------Lkvli~s 151 (722)
T KOG0532|consen 95 CAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLSHLPDGLC--DLP--------------------LKVLIVS 151 (722)
T ss_pred HHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhhcCChhhh--cCc--------------------ceeEEEe
Confidence 33444556666666554 445556666677777777666543222111 112 4444444
Q ss_pred CCchHHH---hhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCCCCCChhHHHHHHHhcccccccccccCC--
Q 004729 389 RSNMAQA---VLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCP-- 463 (733)
Q Consensus 389 ~~~l~~~---~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~-- 463 (733)
+|.+..+ +...++|..|+.+.|. + ..++.-+..+.+|+.|++..+. +.+ ..+++. +-.|..|+++.+.
T Consensus 152 NNkl~~lp~~ig~~~tl~~ld~s~ne-i--~slpsql~~l~slr~l~vrRn~-l~~-lp~El~--~LpLi~lDfScNkis 224 (722)
T KOG0532|consen 152 NNKLTSLPEEIGLLPTLAHLDVSKNE-I--QSLPSQLGYLTSLRDLNVRRNH-LED-LPEELC--SLPLIRLDFSCNKIS 224 (722)
T ss_pred cCccccCCcccccchhHHHhhhhhhh-h--hhchHHhhhHHHHHHHHHhhhh-hhh-CCHHHh--CCceeeeecccCcee
Confidence 4443322 3345667777777753 2 2233444556677777777665 211 122222 3456777777544
Q ss_pred CCCcCCCCCCCccEEEeCCCCCCchHHHHHh--hCCCCcCEEEEecC
Q 004729 464 NISLESVRLPMLTVLQLHSCEGITSASMAAI--SHSYMLEVLELDNC 508 (733)
Q Consensus 464 ~l~~~~~~l~~L~~L~L~~c~~l~~~~~~~l--~~~~~L~~L~L~~~ 508 (733)
.++....++..|++|.|.+ +-+........ +..--.++|++.-|
T Consensus 225 ~iPv~fr~m~~Lq~l~Len-NPLqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 225 YLPVDFRKMRHLQVLQLEN-NPLQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred ecchhhhhhhhheeeeecc-CCCCCChHHHHhccceeeeeeecchhc
Confidence 3445555777777777776 43443332221 12233455666655
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.56 E-value=0.13 Score=46.36 Aligned_cols=102 Identities=16% Similarity=0.159 Sum_probs=67.6
Q ss_pred EeeCCCCCC-HHHHHHHHhhCCCccEEEEcCCCchhHHHHHHhhcCCCCCEEEecCccCChHHHHhccCCCCCcEEEEec
Q 004729 267 LNFENRKIS-VEQFEDVCQRYPNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVND 345 (733)
Q Consensus 267 l~l~~~~~~-~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~ 345 (733)
+++..+.+- -......+.+...++.+++++ +.+..........++.++.|+|.+|.+.+ .|..+..++.|+.|++..
T Consensus 32 ldLssc~lm~i~davy~l~~~~el~~i~ls~-N~fk~fp~kft~kf~t~t~lNl~~neisd-vPeE~Aam~aLr~lNl~~ 109 (177)
T KOG4579|consen 32 LDLSSCQLMYIADAVYMLSKGYELTKISLSD-NGFKKFPKKFTIKFPTATTLNLANNEISD-VPEELAAMPALRSLNLRF 109 (177)
T ss_pred cccccchhhHHHHHHHHHhCCceEEEEeccc-chhhhCCHHHhhccchhhhhhcchhhhhh-chHHHhhhHHhhhccccc
Confidence 344444332 223344455666788888887 55555444444567789999999999984 566689999999999999
Q ss_pred CcCCcccccccccCCCccEEEeeccc
Q 004729 346 ATLGNGVQEIPINHDQLRRLEITKCR 371 (733)
Q Consensus 346 ~~l~~~~~~~~~~~~~L~~L~L~~~~ 371 (733)
|.+......+. .+.+|-.|+..++.
T Consensus 110 N~l~~~p~vi~-~L~~l~~Lds~~na 134 (177)
T KOG4579|consen 110 NPLNAEPRVIA-PLIKLDMLDSPENA 134 (177)
T ss_pred CccccchHHHH-HHHhHHHhcCCCCc
Confidence 98875544433 25566666655543
|
|
| >PF13013 F-box-like_2: F-box-like domain | Back alignment and domain information |
|---|
Probab=86.96 E-value=0.8 Score=39.96 Aligned_cols=29 Identities=28% Similarity=0.489 Sum_probs=26.4
Q ss_pred ccCCCHHHHHHHHhcCChhhHHHHHHHHH
Q 004729 224 RMDLTDDLLHMVFSFLDYVDLCRAAIVCR 252 (733)
Q Consensus 224 ~~~LP~ElL~~If~~L~~~dl~~~~lVck 252 (733)
+.+||+||+..||.|....++..+...|+
T Consensus 22 l~DLP~ELl~~I~~~C~~~~l~~l~~~~~ 50 (109)
T PF13013_consen 22 LLDLPWELLQLIFDYCNDPILLALSRTCR 50 (109)
T ss_pred hhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 67899999999999999999988888887
|
|
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=85.06 E-value=2.5 Score=37.76 Aligned_cols=59 Identities=22% Similarity=0.492 Sum_probs=22.5
Q ss_pred cccCcCCceeeeccCccccccccccccHHHHHhcCCCCcEEeecCCCCCChhhhhhhcCCCCCCCccEEEee
Q 004729 547 VSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLD 618 (733)
Q Consensus 547 l~~c~~L~~L~l~~n~L~~l~~~~~~~L~~l~~~~~~L~~L~Ls~C~~lt~~~~~~~~~~~~l~~L~~L~L~ 618 (733)
+.+|.+|+.+.+.. .++.+.-. .+..|++|+.+.+.+ .++...-..| ..+++|+.+.+.
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~-------~F~~~~~l~~i~~~~--~~~~i~~~~F---~~~~~l~~i~~~ 66 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGEN-------AFSNCTSLKSINFPN--NLTSIGDNAF---SNCKSLESITFP 66 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TT-------TTTT-TT-SEEEESS--TTSCE-TTTT---TT-TT-EEEEET
T ss_pred HhCCCCCCEEEECC-CeeEeChh-------hcccccccccccccc--cccccceeee---eccccccccccc
Confidence 56666677666653 34433211 122455666666654 2333222223 345556666663
|
|
| >PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D | Back alignment and domain information |
|---|
Probab=82.36 E-value=0.83 Score=25.42 Aligned_cols=16 Identities=50% Similarity=0.584 Sum_probs=9.9
Q ss_pred CCccEEeccCccccccc
Q 004729 715 PLLTSLDASFCRCVASL 731 (733)
Q Consensus 715 p~L~~L~l~~C~~L~~l 731 (733)
++|+.|++++|. |+.|
T Consensus 1 ~~L~~L~l~~n~-L~~l 16 (17)
T PF13504_consen 1 PNLRTLDLSNNR-LTSL 16 (17)
T ss_dssp TT-SEEEETSS---SSE
T ss_pred CccCEEECCCCC-CCCC
Confidence 468888888888 7655
|
... |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 190 bits (483), Expect = 3e-52
Identities = 93/566 (16%), Positives = 175/566 (30%), Gaps = 115/566 (20%)
Query: 223 IRMDLTDDLLHMVFSFLD-YVDLCRAAIVCRQWRAASAHEDFWRCLNFENRKISVEQFED 281
I + +++L VFSF+ D ++VC+ W W
Sbjct: 5 IALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIER----WCRRKVFIGNCYAVSPAT 60
Query: 282 VCQRYPNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALAD-CSMLKS 340
V +R+P V + G P + + G G + A++ + L+
Sbjct: 61 VIRRFPKVRSVELKGKPHF-----------ADFNLVPDGWGGYVYPWIEAMSSSYTWLEE 109
Query: 341 LNVNDATLGN-GVQEIPINHDQLRRLEITKCR------VMRVSIRCPQLEHLSLKRSN-- 391
+ + + + ++ I + + L ++ C + ++ C L+ L L+ S+
Sbjct: 110 IRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVD 169
Query: 392 ------MAQAVLNCPLLHLLDIASCH-KLSDAAIRLAATSCPQLESLDMSNCSCVSDESL 444
++ L L+I+ ++S +A+ T CP L+SL ++ V E L
Sbjct: 170 DVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNR--AVPLEKL 227
Query: 445 REIALSCANLRILNSSYCPNISLESVRLPMLTVLQ-------LHSCEGITSASMAAI-SH 496
+ L L + V + L L A + A+ S
Sbjct: 228 ATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSV 287
Query: 497 SYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAALHRI 556
L L L + + ++L L C K L +
Sbjct: 288 CSRLTTLNLSYATVQSYDLVKL-------LCQCPKLQRLWVLD----------------- 323
Query: 557 NITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGG------GCP 610
I L+ LA C+ L+E+ + E ++ G GCP
Sbjct: 324 YIEDAGLE-----------VLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCP 372
Query: 611 MLKSLVLDNC----EGLTVVRFCSTSLVSLSLVGC--------------RAITALELKCP 652
L+S++ L + ++ L A+ C
Sbjct: 373 KLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCK 432
Query: 653 ILEKVCLDGC---DHIESASFVPVALQSLNLGICPKLSTLGIEAL-----HMVVLELKGC 704
L ++ L G E ++ L++ S LG+ + + LE++ C
Sbjct: 433 DLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAG-DSDLGMHHVLSGCDSLRKLEIRDC 491
Query: 705 GVLSDAYI----NCPLLTSLDASFCR 726
A + + SL S C
Sbjct: 492 PFGDKALLANASKLETMRSLWMSSCS 517
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 90.3 bits (224), Expect = 5e-19
Identities = 47/281 (16%), Positives = 89/281 (31%), Gaps = 39/281 (13%)
Query: 265 RCLNFENRKISVEQFEDVCQRYPNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQL 324
RCL+ V T +N+ A ++K + L+ L + +
Sbjct: 268 RCLSG-FWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWV-LDYI 325
Query: 325 GDAFFHALAD-CSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIRCPQLE 383
DA LA C L+ L V + + + L + S+ CP+LE
Sbjct: 326 EDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSV----------SMGCPKLE 375
Query: 384 HLSLKRSNMAQAVL-----NCPLLHLLDIASC---------HKLSDAAIRLAATSCPQLE 429
+ M A L N P + + + D C L
Sbjct: 376 SVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLR 435
Query: 430 SLDMSNCSCVSDESLREIALSCANLRILNSSYCPNISLESVR-----LPMLTVLQLHSCE 484
L + ++D+ I + +L+ ++ S + L L++ C
Sbjct: 436 RLSL--SGLLTDKVFEYIGTYAKKMEMLSVAFA-GDSDLGMHHVLSGCDSLRKLEIRDCP 492
Query: 485 GITSASMAAISHSYMLEVLELDNCNL----LTSVSLELPRL 521
A +A S + L + +C++ + ++P+L
Sbjct: 493 FGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKL 533
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 72.6 bits (178), Expect = 2e-13
Identities = 45/292 (15%), Positives = 86/292 (29%), Gaps = 35/292 (11%)
Query: 214 GTPKTEDLEIRMDLTDDLLHMVFSF---LDYVDLCRAAIVCRQWRAASAHEDFWRCLNFE 270
G + L D L V+S L ++L A + + L
Sbjct: 263 GCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVL 322
Query: 271 NRKISVEQFEDVCQRYPNATEVNIYGAPAIHLL---------VMKAVSLLRNLEALTLGR 321
+ I E + + E+ ++ + + ++ LE++
Sbjct: 323 DY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFC 381
Query: 322 GQLGDAFFHALAD-CSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIRCP 380
Q+ +A +A + + I LE + C
Sbjct: 382 RQMTNAALITIARNRPNMTRFRL---------CIIEPKAPDYLTLEPLDIGFGAIVEHCK 432
Query: 381 QLEHLSLKR----SNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNC 436
L LSL + +L +A SD + + C L L++ +C
Sbjct: 433 DLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAG-DSDLGMHHVLSGCDSLRKLEIRDC 491
Query: 437 SCVSDESLREIALSCANLRILNSSYCPNISLESV-----RLPMLTVLQLHSC 483
D++L A +R L S C ++S + ++P L V +
Sbjct: 492 P-FGDKALLANASKLETMRSLWMSSC-SVSFGACKLLGQKMPKLNVEVIDER 541
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 58.4 bits (141), Expect = 5e-09
Identities = 21/147 (14%), Positives = 44/147 (29%), Gaps = 12/147 (8%)
Query: 322 GQLGDAFFHALAD-CSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCR-----VMRV 375
+ D F A+ + C L+ L+++ + I ++ L + + V
Sbjct: 417 LEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHV 476
Query: 376 SIRCPQLEHLSLKRSN-----MAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLES 430
C L L ++ + + L ++SC +S A +L P+L
Sbjct: 477 LSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSC-SVSFGACKLLGQKMPKLNV 535
Query: 431 LDMSNCSCVSDESLREIALSCANLRIL 457
+ R +
Sbjct: 536 EVIDERGAPDSRPESCPVERVFIYRTV 562
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 | Back alignment and structure |
|---|
Score = 175 bits (444), Expect = 4e-49
Identities = 53/322 (16%), Positives = 119/322 (36%), Gaps = 26/322 (8%)
Query: 226 DLTDDLLHMVFSFLDYVDLCRAAIVCRQWRAASAHEDFWRCLNFENRKISVEQFEDVCQR 285
L D+LL +FS L +L + + VC++W ++ E W+ L+ + + DV R
Sbjct: 11 SLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDLTGKNLH----PDVTGR 66
Query: 286 YPNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALAD-CSMLKSLNVN 344
+ + + + ++ + L + + H + CS L++L++
Sbjct: 67 LLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE 126
Query: 345 DATLGNGVQEIPINHDQLRRLEITKCRVMRVSIRCPQLEHLSLKRSNMAQAVLNCPLLHL 404
L + + + L RL ++ C + + +C L
Sbjct: 127 GLRLSDPIVNTLAKNSNLVRLNLSGCS--------------GFSEFALQTLLSSCSRLDE 172
Query: 405 LDIASCHKLSDAAIR-LAATSCPQLESLDMSNC-SCVSDESLREIALSCANLRILNSSYC 462
L+++ C ++ ++ A + L++S + L + C NL L+ S
Sbjct: 173 LNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDS 232
Query: 463 PNISLESV----RLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLEL 518
+ + +L L L L C I ++ + L+ L++ ++ L
Sbjct: 233 VMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLK 292
Query: 519 PRLQNIRLVHCRKFADLNLRAM 540
L ++++ +C F + +
Sbjct: 293 EALPHLQI-NCSHFTTIARPTI 313
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 | Back alignment and structure |
|---|
Score = 99.6 bits (248), Expect = 7e-23
Identities = 58/344 (16%), Positives = 110/344 (31%), Gaps = 75/344 (21%)
Query: 368 TKCRVMRVSIRCPQL-------EHLSLKRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRL 420
+V V R +L + L L N+ V L + C +
Sbjct: 28 ELLKVSGVCKRWYRLASDESLWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLA 87
Query: 421 AATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCP--NISLESV-RLPMLTV 477
S +++ +D+SN + +L I C+ L+ L+ + + ++ + L
Sbjct: 88 EHFSPFRVQHMDLSNS-VIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVR 146
Query: 478 LQLHSCEGITSASMAAISHSY-MLEVLELDNCNLLTSVSLEL------PRLQNIRLVHCR 530
L L C G + ++ + S L+ L L C T +++ + + L R
Sbjct: 147 LNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR 206
Query: 531 KFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLT 590
K N+ + L +L +C L +DL+
Sbjct: 207 K-------------------------NLQKSDLS-----------TLVRRCPNLVHLDLS 230
Query: 591 DCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRFCSTSLVSLSLVGCRAITALELK 650
D L N + F L+ L L C + +L+ L +
Sbjct: 231 DSVMLKNDCFQEFFQ---LNYLQHLSLSRCYDII-----PETLLELG------------E 270
Query: 651 CPILEKVCLDGCDHIESASFVPVALQSLNLGICPKLSTLGIEAL 694
P L+ + + G + + AL L + C +T+ +
Sbjct: 271 IPTLKTLQVFGIVPDGTLQLLKEALPHLQIN-CSHFTTIARPTI 313
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 | Back alignment and structure |
|---|
Score = 86.5 bits (214), Expect = 2e-18
Identities = 49/324 (15%), Positives = 95/324 (29%), Gaps = 79/324 (24%)
Query: 428 LESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNISLESVRLPMLTVLQLHSCEGIT 487
L ++ S V + +A + + L+ + + RL V+
Sbjct: 24 LCLPELLKVSGVC-KRWYRLASDESLWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFM 82
Query: 488 SASMAAISHSYMLEVLELDNCNL----LTSVSLELPRLQNIRLVHCRKFADLNLRAMMLS 543
+A + ++ ++L N + L + + +LQN+ L R
Sbjct: 83 DQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLR------------- 129
Query: 544 SIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVF 603
++ + L+ + L ++L+ C + +
Sbjct: 130 --------------LSDPIVNTLA------------KNSNLVRLNLSGCSGFSEFALQTL 163
Query: 604 SDGGGCPMLKSLVLDNCEGLT------VVRFCSTSLVSLSLVGCR------AITALELKC 651
C L L L C T V S ++ L+L G R ++ L +C
Sbjct: 164 LSS--CSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRC 221
Query: 652 PILEKVCLDGCDHIESASFVPVA----LQSLNLGICPKLSTLGIEALHMVVLELKGCGVL 707
P L + L +++ F LQ L+L C + + L
Sbjct: 222 PNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLEL------------- 268
Query: 708 SDAYINCPLLTSLDASFCRCVASL 731
P L +L +L
Sbjct: 269 ----GEIPTLKTLQVFGIVPDGTL 288
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 175 bits (444), Expect = 5e-47
Identities = 88/560 (15%), Positives = 186/560 (33%), Gaps = 76/560 (13%)
Query: 225 MDLTDDLLHMVFSFL-DYVDLCRAAIVCRQWRAASAHEDFWRCLNFENRKISVEQFEDVC 283
+ DD++ V +++ D D A++VCR+W + + + +
Sbjct: 14 VATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMAL----CYTATPDRLS 69
Query: 284 QRYPNATEVNIYGAPAIHLL--------------VMKAVSLLRNLEALTLGRGQLGDAFF 329
+R+PN + + G P + V + + LR L+++ R + D
Sbjct: 70 RRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDL 129
Query: 330 HALAD--CSMLKSLNVNDATL--GNGVQEIPINHDQLRRLEITKCRV--------MRVSI 377
LA L++L ++ + +G+ I + +++ L + + ++
Sbjct: 130 DRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189
Query: 378 RCPQLEHLSLKRSNMAQA--------VLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLE 429
LE L+ + A+ NC L + + L AA + +
Sbjct: 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFC 249
Query: 430 SLDMSNCSCVSDESLREIALSCANLRILNSSYCPNISLESV--RLPMLTVLQLHSCEGIT 487
++ + ++ + + L L SY + + + L L T
Sbjct: 250 GGSLNEDIGMPEKYMN--LVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLET 307
Query: 488 SASMAAISHSYMLEVLELDNC---NLLTSVSLELPRLQNIRLVHCRKFADLNLRAMMLSS 544
I LEVLE N L ++ +L+ +R+ + ++S
Sbjct: 308 EDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQ 367
Query: 545 I----MVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVC 600
+ C L + + + + SL E++ + + V L E +T+
Sbjct: 368 RGLIALAQGCQELEYMAVYVSDITNESL---ESIGTYLKNLCDFRLVLLDREERITDLPL 424
Query: 601 E--VFSDGGGCPMLKSLVLDNC------EGLTVVRFCSTSLVSLSLVGCR----AITALE 648
+ V S GC L+ GL+ + S ++ + L +
Sbjct: 425 DNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFS 484
Query: 649 LKCPILEKVCLDGCDHIESASFVPVALQSLNLGICPKLSTLGIEALHMVVLELKGCGVLS 708
CP L+K+ + GC F A+ + + P L L ++ + G ++
Sbjct: 485 RGCPNLQKLEMRGC------CFSERAIAAA-VTKLPSLRYLWVQGYR---ASMTGQDLMQ 534
Query: 709 DAYINCPLLTSLDASFCRCV 728
A + + + V
Sbjct: 535 MA-RPYWNIELIPSRRVPEV 553
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 114 bits (287), Expect = 1e-26
Identities = 68/508 (13%), Positives = 152/508 (29%), Gaps = 67/508 (13%)
Query: 236 FSFLDYVDLCRAAIVCRQWRAASAHEDFWRCLNFENRKISVEQFEDVCQRY-PNATEVNI 294
+ + + V S + + ++F +S + + + + + +
Sbjct: 86 AAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKL 145
Query: 295 YGAPAIHLLVMKAV-SLLRNLEALTLGR---GQLGDAFFHALAD-CSMLKSLNVNDATLG 349
+ ++ + R ++ L + + + H LA + L+ LN
Sbjct: 146 DKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFA 205
Query: 350 N----GVQEIPINHDQLRRLEITKCRVM---RVSIRCPQLEHLSLKR----SNMAQAVLN 398
++ I N L +++ ++ LE M + +N
Sbjct: 206 KISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMN 265
Query: 399 CPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILN 458
L + + + Q+ LD+ + E + C NL +L
Sbjct: 266 LVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLE 324
Query: 459 SSYC-PNISLESV--RLPMLTVLQLHSCE----------GITSASMAAISHS-YMLEVLE 504
+ + LE + L L++ ++ + A++ LE +
Sbjct: 325 TRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMA 384
Query: 505 LDNCNL----LTSVSLELPRLQNIRLV---HCRKFADLNLRAMMLSSIMVSNCAALHRIN 557
+ ++ L S+ L L + RLV + DL L + S ++ C L R
Sbjct: 385 VYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRS--LLIGCKKLRRFA 442
Query: 558 ITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVL 617
L+ L+ + ++ + L + E GCP L+ L +
Sbjct: 443 FYLRQ-GGLTD---LGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSR---GCPNLQKLEM 495
Query: 618 DNC----EGLTVVRFCSTSLVSLSLVGCRAITALELKCPILEKVCLDGCDHIESASFVPV 673
C + SL L + G + + G D ++ A
Sbjct: 496 RGCCFSERAIAAAVTKLPSLRYLWVQGY--------------RASMTGQDLMQMARPYWN 541
Query: 674 ALQSLNLGICPKLSTLGIEALHMVVLEL 701
++ + P+++ G +
Sbjct: 542 -IELIPSRRVPEVNQQGEIREMEHPAHI 568
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 96.2 bits (239), Expect = 7e-21
Identities = 56/381 (14%), Positives = 105/381 (27%), Gaps = 87/381 (22%)
Query: 363 RRLEITKCR---VMRVSIRCPQLEHLSLKRSNMAQAVLNCPLLHLLDIAS--CHKLSDAA 417
+ + C R+S R P L L LK P + ++
Sbjct: 53 EHVTMALCYTATPDRLSRRFPNLRSLKLK---------GKPRAAMFNLIPENWGGYVTPW 103
Query: 418 IRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNISLESVRLPMLTV 477
+ + + QL+S+ VSD L +A + + L
Sbjct: 104 VTEISNNLRQLKSVHFRRMI-VSDLDLDRLAKAR----------ADD----------LET 142
Query: 478 LQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNL 537
L+L C G T+ + +I +C + ++ +E + A
Sbjct: 143 LKLDKCSGFTTDGLLSIVT----------HCRKIKTLLMEESSFSEKDGKWLHELAQ--- 189
Query: 538 RAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTN 597
+ +L +N K+S ++L ++A C+ L V + D E L
Sbjct: 190 -----------HNTSLEVLNFYMTEFAKISP---KDLETIARNCRSLVSVKVGDFEILEL 235
Query: 598 SVCEVFSDGGGCPMLKSLVLDNCEGLTVVRFCSTSLVSLSLVGCRAITALELKCPILEKV 657
F L+ G+ L +G + E+ +
Sbjct: 236 V--GFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMP------I 287
Query: 658 CLDGCDHIESASFVPVALQSLNLGICPKLSTLGIEAL-HMVVLE-LKGCGVLSDAYI--- 712
++ L+L + + LE L+ V+ D +
Sbjct: 288 LFPFAAQ----------IRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVL 337
Query: 713 --NCPLLTSLDASFCRCVASL 731
C L L +
Sbjct: 338 AQYCKQLKRLRIERGADEQGM 358
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 89.2 bits (221), Expect = 1e-18
Identities = 33/197 (16%), Positives = 67/197 (34%), Gaps = 24/197 (12%)
Query: 308 VSLLRNLEALTLGRGQLGDAFFHALAD-CSMLKSL---------NVNDATLGNGVQEIPI 357
+ LE + + + + ++ L + D L NGV+ + I
Sbjct: 374 AQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLI 433
Query: 358 NHDQLRRLEITKCR-------VMRVSIRCPQLEHLSLKRSN-----MAQAVLNCPLLHLL 405
+LRR + + + P + + L + + CP L L
Sbjct: 434 GCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKL 493
Query: 406 DIASCHKLSDAAIRLAATSCPQLESLDMSNCSC-VSDESLREIALSCANLRILNSSYCPN 464
++ C S+ AI A T P L L + ++ + L ++A N+ ++ S P
Sbjct: 494 EMRGC-CFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSRRVPE 552
Query: 465 ISLESVRLPMLTVLQLH 481
++ + M +
Sbjct: 553 VNQQGEIREMEHPAHIL 569
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 58.8 bits (142), Expect = 4e-09
Identities = 25/150 (16%), Positives = 45/150 (30%), Gaps = 14/150 (9%)
Query: 324 LGDAFFHALADCSMLKSLNVNDATLG---NGVQEIPINHDQLRRLEITKCRV-----MRV 375
L + L C L+ G G+ I +R + + M
Sbjct: 424 LDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEF 483
Query: 376 SIRCPQLEHLSLKRSN-----MAQAVLNCPLLHLLDIASCH-KLSDAAIRLAATSCPQLE 429
S CP L+ L ++ +A AV P L L + ++ + A +E
Sbjct: 484 SRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIE 543
Query: 430 SLDMSNCSCVSDESLREIALSCANLRILNS 459
+ V+ + A++ S
Sbjct: 544 LIPSRRVPEVNQQGEIREMEHPAHILAYYS 573
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 91.7 bits (228), Expect = 1e-19
Identities = 75/385 (19%), Positives = 131/385 (34%), Gaps = 67/385 (17%)
Query: 313 NLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIP--INHDQLRRLEITKC 370
N + ++ + + L SL+ + + + ++ L +L T
Sbjct: 19 NFASEVAAAFEMQATDTISEEQLATLTSLDCH----NSSITDMTGIEKLTGLTKLICTSN 74
Query: 371 RVMRVSIR-CPQLEHLSLKRSNMAQ-AVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQL 428
+ + + L +L+ + + V L L+ + KL+ L + P L
Sbjct: 75 NITTLDLSQNTNLTYLACDSNKLTNLDVTPLTKLTYLNCDTN-KLTK----LDVSQNPLL 129
Query: 429 ESLDMSNCSCVSDESLREIALS-CANLRILNSSYCPNISLESVR-LPMLTVLQLHSCEGI 486
L+ + + L EI +S L L+ I+ V LT L + I
Sbjct: 130 TYLNCARNT------LTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNK-I 182
Query: 487 TSASMAAISHSYMLEVLELDNCNLLTSVSLE-LPRLQNIRLVHCRKFADLNLRAMMLSSI 545
T +S + +L L D N +T + L +L + + L+ I
Sbjct: 183 TELD---VSQNKLLNRLNCDT-NNITKLDLNQNIQLTFLDCSSNK-----------LTEI 227
Query: 546 MVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSD 605
V+ L + + N L +L + LT+L L E+DLT L E
Sbjct: 228 DVTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAE---- 283
Query: 606 GGGCPMLKSLVLDNCEGLTVVRFCSTSLVSLSLVGCRAITALEL-KCPILEKVCLDGCDH 664
GC +K L + + T L L IT L+L + P L + L+
Sbjct: 284 --GCRKIKELDVTHN----------TQLYLLDCQAAG-ITELDLSQNPKLVYLYLNNT-- 328
Query: 665 IESASFVPVALQSLNLGICPKLSTL 689
L L++ KL +L
Sbjct: 329 ---------ELTELDVSHNTKLKSL 344
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 77.4 bits (191), Expect = 4e-15
Identities = 51/314 (16%), Positives = 106/314 (33%), Gaps = 47/314 (14%)
Query: 308 VSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINH-DQLRRLE 366
+S NL L +L + + + L LN + N + ++ ++ L L
Sbjct: 81 LSQNTNLTYLACDSNKLTN---LDVTPLTKLTYLNCD----TNKLTKLDVSQNPLLTYLN 133
Query: 367 ITKCRVMRVSIR-CPQLEHLSLKRSNM--AQAVLNCPLLHLLDIASCHKLSDAAIRLAAT 423
+ + + + QL L + V L LD + K+++ L +
Sbjct: 134 CARNTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFN-KITE----LDVS 188
Query: 424 SCPQLESLDMSNCS---------------CVSDESLREIALS-CANLRILNSSYCPNISL 467
L L+ + S L EI ++ L + S P L
Sbjct: 189 QNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTEIDVTPLTQLTYFDCSVNPLTEL 248
Query: 468 ESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLV 527
+ L LT L + + ++H+ L + + C + L++ + L
Sbjct: 249 DVSTLSKLTTLHCIQTD-LLEID---LTHNTQLIYFQAEGCRKIKE--LDVTHNTQLYL- 301
Query: 528 HCRKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEV 587
L+ +A ++ + +S L + + + L +L + L SL+ +Q+
Sbjct: 302 -------LDCQAAGITELDLSQNPKLVYLYLNNTELTELDVSHNTKLKSLSCVNAHIQDF 354
Query: 588 D-LTDCESLTNSVC 600
+ +L N+
Sbjct: 355 SSVGKIPALNNNFE 368
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 73.2 bits (180), Expect = 1e-13
Identities = 44/289 (15%), Positives = 92/289 (31%), Gaps = 47/289 (16%)
Query: 452 ANLRILNSSYCPNISLESV---RLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNC 508
N ++ + +++ +L LT L H+ IT + I L L +
Sbjct: 18 DNFASEVAAAFEMQATDTISEEQLATLTSLDCHNS-SITDMT--GIEKLTGLTKLICTS- 73
Query: 509 NLLTSVSL-ELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLS 567
N +T++ L + L + + L+++ V+ L +N +N L KL
Sbjct: 74 NNITTLDLSQNTNLTYLACDSNK-----------LTNLDVTPLTKLTYLNCDTNKLTKLD 122
Query: 568 LQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVR 627
+ + LT L L E+D++ LT C + L + LT +
Sbjct: 123 VSQNPLLTYLNCARNTLTEIDVSHNTQLTELDC------HLNKKITKLDVTPQTQLTTLD 176
Query: 628 FCSTSLVSLSLVGCRAITALEL-----------KCPILEKVCLDGCDHIESASFVPVALQ 676
+ L + + + L + L + L
Sbjct: 177 CSFNKITELDVSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSN-----------KLT 225
Query: 677 SLNLGICPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFC 725
+++ +L+ + L++ L+ + L +D +
Sbjct: 226 EIDVTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHN 274
|
| >1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E Length = 53 | Back alignment and structure |
|---|
Score = 63.0 bits (154), Expect = 5e-13
Identities = 14/43 (32%), Positives = 25/43 (58%)
Query: 226 DLTDDLLHMVFSFLDYVDLCRAAIVCRQWRAASAHEDFWRCLN 268
L D+LL +FS L +L + + VC++W ++ E W+ L+
Sbjct: 11 SLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLD 53
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 68.5 bits (168), Expect = 3e-12
Identities = 84/447 (18%), Positives = 149/447 (33%), Gaps = 91/447 (20%)
Query: 304 VMKAVSLLRNLEALTLGRGQLGD----AFFHALADCSMLKSLNVNDATLGN-GVQEIPIN 358
+ + LL+ + + L L + AL L LN+ LG+ GV +
Sbjct: 20 WAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCV--- 76
Query: 359 HDQLRRLEITKCRVMRVSIRCPQLEHLSLKRSNMAQAVLNCPLLHLLDIASCHKLSDAAI 418
L+ L+ C++ ++S++ L ++ + P L L ++ L DA +
Sbjct: 77 ---LQGLQTPSCKIQKLSLQNCCLTGAGCG--VLSSTLRTLPTLQELHLSDNL-LGDAGL 130
Query: 419 RLAAT----SCPQLESLDMSNCSCVSDESLREIAL---SCANLRILNSSYCPNISLESVR 471
+L +LE L + CS +S S +A + + + L S +I+ VR
Sbjct: 131 QLLCEGLLDPQCRLEKLQLEYCS-LSAASCEPLASVLRAKPDFKELTVSNN-DINEAGVR 188
Query: 472 L---------PMLTVLQLHSCEGITSASMAAIS----HSYMLEVLELDNCNLLTSVSLEL 518
+ L L+L SC G+TS + + L L L + L EL
Sbjct: 189 VLCQGLKDSPCQLEALKLESC-GVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAEL 247
Query: 519 PRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLS--LQKQENLTS 576
+ R L ++ + C IT+ L L+ +E+L
Sbjct: 248 --CPGLLHPSSR-----------LRTLWIWEC------GITAKGCGDLCRVLRAKESLKE 288
Query: 577 LALQCQCLQEVDLTD-CESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRFCSTSLVS 635
L+L L + CE+L C L+SL + +C S
Sbjct: 289 LSLAGNELGDEGARLLCETLLEPGC----------QLESLWVKSC--------------S 324
Query: 636 LSLVGCRAITALELKCPILEKVCLDGCD-HIESASFVPVALQSLNLGICPKLSTLGIEAL 694
+ C +++ + L ++ + + L L L L
Sbjct: 325 FTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPG----SVLRVLW---L 377
Query: 695 HMVVLELKGCGVLSDAYINCPLLTSLD 721
+ C L+ + L LD
Sbjct: 378 ADCDVSDSSCSSLAATLLANHSLRELD 404
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 65.8 bits (161), Expect = 2e-11
Identities = 81/502 (16%), Positives = 164/502 (32%), Gaps = 93/502 (18%)
Query: 265 RCLNFENRKISVEQFEDVCQRYPNATEVNIY----GAPAIHLLVMKAVSLLRNLEALTLG 320
+ L+ + ++S ++ ++ V + + A+ + L L L
Sbjct: 6 QSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDIS-SALRVNPALAELNLR 64
Query: 321 RGQLGDAFFHALADC-----SMLKSLNVNDATLGN-GVQEIPINHDQLRRLEITKCRVMR 374
+LGD H + ++ L++ + L G + +R
Sbjct: 65 SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVL--------------SSTLR 110
Query: 375 VSIRCPQLEHLSLKRSN--------MAQAVL-NCPLLHLLDIASCHKLSDAAIRLAA--T 423
P L+ L L + + + +L L L + C + + LA+
Sbjct: 111 T---LPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLR 167
Query: 424 SCPQLESLDMSNCSCVSDESLREIAL----SCANLRILNSSYCPNISLESVR-------- 471
+ P + L +SN +++ +R + S L L C ++ ++ R
Sbjct: 168 AKPDFKELTVSNND-INEAGVRVLCQGLKDSPCQLEALKLESC-GVTSDNCRDLCGIVAS 225
Query: 472 LPMLTVLQLHSC----EGITSASMAAISHSYMLEVLELDNCNL-------LTSVSLELPR 520
L L L S G+ + S L L + C + L V
Sbjct: 226 KASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKES 285
Query: 521 LQNIRLVHCRKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQ 580
L+ + L + D R L ++ L + + S S + +S+ Q
Sbjct: 286 LKELSLAGN-ELGDEGARL--LCETLLEPGCQLESLWVKSCSFTAACCS---HFSSVLAQ 339
Query: 581 CQCLQEVDLTDCESLTNSVCEVFSDGGGCP--MLKSLVLDNCEGLTVVRFCSTSLVSLSL 638
+ L E+ +++ L ++ G G P +L+ L L +C+ +S
Sbjct: 340 NRFLLELQISNNR-LEDAGVRELCQGLGQPGSVLRVLWLADCD--------------VSD 384
Query: 639 VGCRAITALELKCPILEKVCLDGCDHIESASFVPVALQSLNLGICPKLSTLGIEALHMVV 698
C ++ A L L ++ L + A + + +S+ C L L L+ +
Sbjct: 385 SSCSSLAATLLANHSLRELDLSNN-CLGDAGILQLV-ESVRQPGC-LLEQLV---LYDIY 438
Query: 699 LELKGCGVLSDAYINCPLLTSL 720
+ L + P L +
Sbjct: 439 WSEEMEDRLQALEKDKPSLRVI 460
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176 | Back alignment and structure |
|---|
Score = 64.1 bits (156), Expect = 5e-12
Identities = 16/117 (13%), Positives = 35/117 (29%), Gaps = 9/117 (7%)
Query: 397 LNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSC---AN 453
L+ + +D + +E + + C + D L ++ +
Sbjct: 58 LDKYKIQAIDATDS-CIMSIGFDHM-EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKS 115
Query: 454 LRILNSSYCPNISLESV----RLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELD 506
+ + C N++ + + L L L G+ + L LEL
Sbjct: 116 MLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLELK 172
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176 | Back alignment and structure |
|---|
Score = 60.6 bits (147), Expect = 7e-11
Identities = 15/117 (12%), Positives = 41/117 (35%), Gaps = 12/117 (10%)
Query: 376 SIRCPQLEHLSLKRSNM----AQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCP---QL 428
+ +++ + S + + + + + CH + D + + +
Sbjct: 57 PLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSM 116
Query: 429 ESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNIS----LESVRLPMLTVLQLH 481
+++ +C V+D+ + + NL+ L S P + + L L+L
Sbjct: 117 LEMEIISCGNVTDKGIIALH-HFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLELK 172
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176 | Back alignment and structure |
|---|
Score = 58.3 bits (141), Expect = 5e-10
Identities = 13/125 (10%), Positives = 38/125 (30%), Gaps = 11/125 (8%)
Query: 414 SDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNISLESVR-- 471
+ +++++D ++ C+ + + + C I +
Sbjct: 49 DYNHLPTGPLDKYKIQAIDATDS-CIMSIGF-DHMEGLQYVEKIRLCKCHYIEDGCLERL 106
Query: 472 ------LPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIR 525
+ +++ SC +T + A+ H L+ L L + + + +
Sbjct: 107 SQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKEKEKIVQAFKT-S 165
Query: 526 LVHCR 530
L
Sbjct: 166 LPSLE 170
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176 | Back alignment and structure |
|---|
Score = 55.2 bits (133), Expect = 5e-09
Identities = 20/125 (16%), Positives = 50/125 (40%), Gaps = 14/125 (11%)
Query: 334 DCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIRCPQLEHLSLKRSNMA 393
D +++++ D+ + + + + ++ + +C +E L+R ++
Sbjct: 59 DKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLC---------KCHYIEDGCLER--LS 107
Query: 394 QAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIAL--SC 451
Q + ++I SC ++D I A L+ L +S+ V ++ A S
Sbjct: 108 QLENLQKSMLEMEIISCGNVTDKGII-ALHHFRNLKYLFLSDLPGVKEKEKIVQAFKTSL 166
Query: 452 ANLRI 456
+L +
Sbjct: 167 PSLEL 171
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176 | Back alignment and structure |
|---|
Score = 52.9 bits (127), Expect = 3e-08
Identities = 16/128 (12%), Positives = 39/128 (30%), Gaps = 21/128 (16%)
Query: 573 NLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRFCSTS 632
+L + L +Q +D TD + + + G ++ + L C +
Sbjct: 52 HLPTGPLDKYKIQAIDATDS-CIMSIGFDHME---GLQYVEKIRLCKCHYIE-------- 99
Query: 633 LVSLSLVGCRAITALELKCPILEKVCLDGCDHIESASFVPVA----LQSLNLGICPKLST 688
++ LE + ++ + C ++ + + L+ L L P +
Sbjct: 100 -----DGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKE 154
Query: 689 LGIEALHM 696
Sbjct: 155 KEKIVQAF 162
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176 | Back alignment and structure |
|---|
Score = 42.9 bits (101), Expect = 1e-04
Identities = 20/133 (15%), Positives = 45/133 (33%), Gaps = 25/133 (18%)
Query: 527 VHCRKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQ------ 580
+ K ++ + SI + L ++K+ L K + L+
Sbjct: 58 LDKYKIQAIDATDSCIMSIGFDHMEGLQY-------VEKIRLCKCHYIEDGCLERLSQLE 110
Query: 581 --CQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRFCSTSLVSLSL 638
+ + E+++ C ++T+ LK L L + G+ + +
Sbjct: 111 NLQKSMLEMEIISCGNVTDKGIIALH---HFRNLKYLFLSDLPGVK-----EKEKIVQAF 162
Query: 639 VGCRAITALELKC 651
++ +LELK
Sbjct: 163 --KTSLPSLELKL 173
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 68.3 bits (167), Expect = 5e-12
Identities = 61/370 (16%), Positives = 117/370 (31%), Gaps = 59/370 (15%)
Query: 311 LRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINH----DQLRRLE 366
L NL+ L L LG+ + + +++ N + I ++L+ L+
Sbjct: 313 LDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQ----KNHIAIIQDQTFKFLEKLQTLD 368
Query: 367 ITKCRVMRVSIRCPQLEHLSLKRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCP 426
+ + + P + + L + + +L+ + S ++L + I P
Sbjct: 369 LRDNALTTIHF-IPSIPDIFLSGNKLVTLPKINLTANLIHL-SENRLENLDILYFLLRVP 426
Query: 427 QLESLDMSN---------CSCVSDESLREIALSCANLRILNSSYCPNISLESVRLPMLTV 477
L+ L ++ + + SL ++ L L++ + E L L V
Sbjct: 427 HLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEG--LSHLQV 484
Query: 478 LQLHSCEGITSASMAAISHSYMLEVLELDNCNLLT-SVSLELPRLQNIRLVHCRKFADLN 536
L L+ + S SH L L L++ L S + L+ L+
Sbjct: 485 LYLNHN-YLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEI-----------LD 532
Query: 537 LRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQC--------LQEVD 588
+ L + +L ++IT N C+C L +
Sbjct: 533 ISRNQLLAPNPDVFVSLSVLDITHNK----------------FICECELSTFINWLNHTN 576
Query: 589 LTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRFCSTSLVSLSLVGCRAITALE 648
+T + C G L SL + C+ V++ SL + V
Sbjct: 577 VTIAGPPADIYCVYPDSFSGVS-LFSLSTEGCDEEEVLKSLKFSLFIVCTVTLTLFLMTI 635
Query: 649 LKCPILEKVC 658
L C
Sbjct: 636 LTVTKFRGFC 645
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 64.4 bits (157), Expect = 8e-11
Identities = 72/482 (14%), Positives = 142/482 (29%), Gaps = 75/482 (15%)
Query: 309 SLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPI-NHDQLRRLEI 367
+L E L L + + L+ L + + + N LR L++
Sbjct: 21 QVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDL 80
Query: 368 TKCRVMRVSIR----CPQLEHLSLKRSNMAQAVL------NCPLLHLLDIASCHKLSDAA 417
++ + L L L ++ AVL N L LD++ +
Sbjct: 81 GSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ-IRSLY 139
Query: 418 IRLAATSCPQLESLDMSNC--SCVSDESLREIALSCANLRILNSSYCPNISLESV----- 470
+ + L+S+D S+ V + L L L + + S SV
Sbjct: 140 LHPSFGKLNSLKSIDFSSNQIFLVCEHELE--PLQGKTLSFFSLAANSLYSRVSVDWGKC 197
Query: 471 ----RLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRL 526
R +L +L + + + + L + + +++
Sbjct: 198 MNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQ 257
Query: 527 VHCRKFADLNLRAMMLS--------SIMVSNCAALHRINITSNSLQKL---SLQKQENLT 575
A ++R + LS S + L +N+ N + K+ + +NL
Sbjct: 258 NTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQ 317
Query: 576 SLALQ--------------CQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCE 621
L L + +DL + + F L++L L +
Sbjct: 318 VLNLSYNLLGELYSSNFYGLPKVAYIDLQKN-HIAIIQDQTFK---FLEKLQTLDLRDNA 373
Query: 622 GLTVVRFCSTSLVSLSLVGCRAITALELKCPILEKVCLDG--CDHIESASFVP--VALQS 677
LT + F S+ + L + L + L ++++ F+ LQ
Sbjct: 374 -LTTIHFI-PSIPDIFL-SGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQI 430
Query: 678 LNLGICPKLSTLGIEAL-----HMVVLELKGC--------GVLSDAYINCPLLTSLDASF 724
L L + S+ + + L L + D + L L +
Sbjct: 431 LILNQN-RFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNH 489
Query: 725 CR 726
Sbjct: 490 NY 491
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 42.5 bits (100), Expect = 6e-04
Identities = 36/186 (19%), Positives = 65/186 (34%), Gaps = 25/186 (13%)
Query: 424 SC-PQLESLDMSNCSCVSDESLREIALSCANLRILNSSYC--PNISLES-VRLPMLTVLQ 479
SC C+ L ++ L S+ ++ S L L +L+
Sbjct: 1 SCSFDGRIAFYRFCN------LTQVPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLE 54
Query: 480 LHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLE----LPRLQNIRLVHCRKFADL 535
L S + A + L +L+L + + + + + L L +RL C
Sbjct: 55 LGSQYTPLTIDKEAFRNLPNLRILDLGS-SKIYFLHPDAFQGLFHLFELRLYFCG----- 108
Query: 536 NLRAMMLSSIMVSNCAALHRINITSNSLQKL----SLQKQENLTSLALQCQCLQEVDLTD 591
L +L N AL R++++ N ++ L S K +L S+ + V +
Sbjct: 109 -LSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHE 167
Query: 592 CESLTN 597
E L
Sbjct: 168 LEPLQG 173
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 65.4 bits (160), Expect = 3e-11
Identities = 56/353 (15%), Positives = 125/353 (35%), Gaps = 58/353 (16%)
Query: 309 SLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEI-PINH-DQLRRLE 366
+ L LG+ + D + D + +L + G++ I + + + L ++
Sbjct: 21 TALAEKMKTVLGKTNVTDTV--SQTDLDQVTTLQADR----LGIKSIDGVEYLNNLTQIN 74
Query: 367 ITKCRVMRVSI--RCPQLEHLSLKRSNM---AQAVLNCPLLHLLDIASCHKLSDAAIRLA 421
+ ++ ++ +L + + +N + N L L + + +++D
Sbjct: 75 FSNNQLTDITPLKNLTKLVDILM-NNNQIADITPLANLTNLTGLTLFNN-QITDID---P 129
Query: 422 ATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNISLESVRLPMLTVLQLH 481
+ L L++S+ + +L +L+ L+ L L L +
Sbjct: 130 LKNLTNLNRLELSSNTISDISALS----GLTSLQQLSFGNQVTDLKPLANLTTLERLDIS 185
Query: 482 SCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAMM 541
S + ++ ++ ++ LE L N N ++ ++ L L N+ +L+L
Sbjct: 186 SNK-VS--DISVLAKLTNLESLIATN-NQISDIT-PLGILTNLD--------ELSLNGNQ 232
Query: 542 LSSI-MVSNCAALHRINITSNSLQKLS-LQKQENLTSLAL------------QCQCLQEV 587
L I +++ L +++ +N + L+ L LT L L L +
Sbjct: 233 LKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNL 292
Query: 588 DLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNC--EGLTVVRFCSTSLVSLSL 638
+L + + L + S L L L ++ V T L L
Sbjct: 293 ELNENQ-LED-----ISPISNLKNLTYLTLYFNNISDISPVSSL-TKLQRLFF 338
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 60.7 bits (148), Expect = 8e-10
Identities = 59/316 (18%), Positives = 114/316 (36%), Gaps = 42/316 (13%)
Query: 306 KAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEI-PI-NHDQLR 363
+ L NL L L + D AL+ + L+ L+ GN V ++ P+ N L
Sbjct: 128 DPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLS-----FGNQVTDLKPLANLTTLE 180
Query: 364 RLEITKCRVMRVSI--RCPQLEHLSLKRSNMA--QAVLNCPLLHLLDIASCHKLSDAAIR 419
RL+I+ +V +S+ + LE L + ++ + L L + +L D
Sbjct: 181 RLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGN-QLKDIG-- 237
Query: 420 LAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNISLESVR-LPMLTVL 478
S L LD++N + L L L ++ + L LT L
Sbjct: 238 -TLASLTNLTDLDLANNQISNLAPLS----GLTKLTELKLGANQISNISPLAGLTALTNL 292
Query: 479 QLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLE-LPRLQNIRLVHCR-----KF 532
+L+ + + S IS+ L L L N+ + L +LQ + + +
Sbjct: 293 ELNENQ-LEDIS--PISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSL 349
Query: 533 ADL-NLRAMMLSS------IMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQ 585
A+L N+ + ++N + ++ + + + + N++
Sbjct: 350 ANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTG 409
Query: 586 EV----DLTDCESLTN 597
+ ++D S T
Sbjct: 410 ALIAPATISDGGSYTE 425
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 63.9 bits (156), Expect = 9e-11
Identities = 51/291 (17%), Positives = 107/291 (36%), Gaps = 35/291 (12%)
Query: 313 NLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIP---INHDQLRRLEITK 369
++E++ L + + + S L+ L++ + E+P + L++L ++
Sbjct: 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLT----ATHLSELPSGLVGLSTLKKLVLSA 310
Query: 370 CRVMRVSIR----CPQLEHLSLKRSN-----MAQAVLNCPLLHLLDIASCHKLSDAAIRL 420
+ + P L HLS+K + + N L LD++ + L
Sbjct: 311 NKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNL 370
Query: 421 AATSCPQLESLDMSNC--SCVSDESLREIALSCANLRILNSSYCP--NISLESV--RLPM 474
+ L+SL++S + E+ + C L +L+ ++ +S L +
Sbjct: 371 QLRNLSHLQSLNLSYNEPLSLKTEAFK----ECPQLELLDLAFTRLKVKDAQSPFQNLHL 426
Query: 475 LTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFAD 534
L VL L + +S L+ L L + + LQ +
Sbjct: 427 LKVLNLSHSL-LDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQT-----LGRLEI 480
Query: 535 LNLRAMMLSSI---MVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQ 582
L L LSSI ++ ++ ++++ N L S++ +L + L
Sbjct: 481 LVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLA 531
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 62.0 bits (151), Expect = 5e-10
Identities = 55/358 (15%), Positives = 113/358 (31%), Gaps = 51/358 (14%)
Query: 311 LRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPI----NHDQLRRLE 366
+ L+ L + + F L + L+SL + N + I + ++L+ L+
Sbjct: 104 PKALKHLFFIQTGISSIDFIPLHNQKTLESLYLG----SNHISSIKLPKGFPTEKLKVLD 159
Query: 367 ITKCRVMRVS----IRCPQLEHLSLKRSN-----MAQAVLNCPLLHLLDIASCHKLSDAA 417
+ +S Q +LSL + + + + L+ L
Sbjct: 160 FQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIF 219
Query: 418 IRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNISLES---VRLPM 474
L ++ L + L ++ +N ++ S
Sbjct: 220 KGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSG 279
Query: 475 LTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNL--LTSVSLE-LPRLQNIRLVHCRK 531
L L L + ++ + + L+ L L L +S P L ++ +
Sbjct: 280 LQELDLTATH-LSELP-SGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKG--- 334
Query: 532 FADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQE--NLTSLALQCQCLQEVDL 589
N + + L + + N L ++++ + ++ + NL+ LQ ++L
Sbjct: 335 ----NTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSH-------LQSLNL 383
Query: 590 TDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRFCS-----TSLVSLSLVGCR 642
+ + E F CP L+ L L L V S L L+L
Sbjct: 384 SYN-EPLSLKTEAFK---ECPQLELLDLAFTR-LKVKDAQSPFQNLHLLKVLNLSHSL 436
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 51.2 bits (123), Expect = 1e-06
Identities = 59/348 (16%), Positives = 116/348 (33%), Gaps = 58/348 (16%)
Query: 423 TSCPQLESLDMSNC--SCVSDESLREIALSCANLRILNSSYCPNISLES---VRLPMLTV 477
+ L LD++ C + +++ + S L L + P I + L
Sbjct: 54 SRLINLTFLDLTRCQIYWIHEDTFQ----SQHRLDTLVLTANPLIFMAETALSGPKALKH 109
Query: 478 LQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLE----LPRLQNIRLVHCR--- 530
L GI+S + + LE L L + N ++S+ L +L+ + +
Sbjct: 110 LFFIQT-GISSIDFIPLHNQKTLESLYLGS-NHISSIKLPKGFPTEKLKVLDFQNNAIHY 167
Query: 531 ------------KFADLNLRAMMLSSIM--VSNCAALHRINITSNSLQKLSLQKQENLTS 576
LNL ++ I + A +N + + +N T
Sbjct: 168 LSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTI 227
Query: 577 LALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNC--EGLTVVRF-CSTSL 633
+L +++D D +G ++S+ L ++ F C + L
Sbjct: 228 QSLWLGTFEDMDDEDISPAV-------FEGLCEMSVESINLQKHYFFNISSNTFHCFSGL 280
Query: 634 VSLSLVGCRAITALE---LKCPILEKVCLDGC--DHIESASFVP-VALQSLNLGICPKLS 687
L L ++ L + L+K+ L +++ S +L L++ K
Sbjct: 281 QELDLTATH-LSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRL 339
Query: 688 TLGIEAL----HMVVLEL-----KGCGVLSDAYINCPLLTSLDASFCR 726
LG L ++ L+L + + N L SL+ S+
Sbjct: 340 ELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE 387
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 7e-06
Identities = 45/296 (15%), Positives = 90/296 (30%), Gaps = 50/296 (16%)
Query: 442 ESLREIALSCANLRILNSSYCPNISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLE 501
S + S L + ++ + RL LT L L C+ I + L+
Sbjct: 33 NSTECLEFSFNVLPTIQNT-----TFS--RLINLTFLDLTRCQ-IYWIHEDTFQSQHRLD 84
Query: 502 VLELDNCNLLTSVSLE----LPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAALHRIN 557
L L N L ++ L+++ + + + I + N L +
Sbjct: 85 TLVLTA-NPLIFMAETALSGPKALKHLFFIQT------GIS--SIDFIPLHNQKTLESLY 135
Query: 558 ITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVL 617
+ SN + + L K L+ +D + ++ E S +L L
Sbjct: 136 LGSNHISSIKLPKGFPTEK-------LKVLDFQNN-AIHYLSKEDMS---SLQQATNLSL 184
Query: 618 D----NCEGLTVVRFCSTSLVSLSLVGCRAITALELKCPILEKVCLDGCDHIESASFVPV 673
+ + G+ F S SL+ G + V G + S
Sbjct: 185 NLNGNDIAGIEPGAFDSAVFQSLNFGGTQ-----------NLLVIFKGLKNSTIQSLWLG 233
Query: 674 ALQSLNLGICPKLSTLGIEALHMVVLELKGC---GVLSDAYINCPLLTSLDASFCR 726
+ ++ G+ + + + L+ + S+ + L LD +
Sbjct: 234 TFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATH 289
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 63.2 bits (154), Expect = 1e-10
Identities = 57/307 (18%), Positives = 110/307 (35%), Gaps = 59/307 (19%)
Query: 311 LRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINH----DQLRRLE 366
+LE L L + A + L++L + N ++ IP+ L +L+
Sbjct: 55 FPHLEELELNENIVSAVEPGAFNNLFNLRTLGLR----SNRLKLIPLGVFTGLSNLTKLD 110
Query: 367 ITKCRVMRVSIRC----PQLEHLSLKR----SNMAQAVLNCPLLHLLDIASCH--KLSDA 416
I++ +++ + L+ L + +A L L + C+ +
Sbjct: 111 ISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTE 170
Query: 417 AIRLAATSCPQLESLDMSNC--SCVSDESLREIALSCANLRILNSSYCPNISLES---VR 471
A+ L L + + + + D S + L++L S+ P + + +
Sbjct: 171 ALS----HLHGLIVLRLRHLNINAIRDYSFK----RLYRLKVLEISHWPYLDTMTPNCLY 222
Query: 472 LPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVS----LELPRLQNIRLV 527
LT L + C +T+ A+ H L L L N ++++ EL RLQ I+LV
Sbjct: 223 GLNLTSLSITHCN-LTAVPYLAVRHLVYLRFLNLSY-NPISTIEGSMLHELLRLQEIQLV 280
Query: 528 HCRKFADLNLRAMMLSSI---MVSNCAALHRINITSNSLQKLSLQKQENLTSLA------ 578
+ L+ + L +N++ N L L ++ +L
Sbjct: 281 GGQ-----------LAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDS 329
Query: 579 --LQCQC 583
L C C
Sbjct: 330 NPLACDC 336
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 62.2 bits (151), Expect = 3e-10
Identities = 59/369 (15%), Positives = 111/369 (30%), Gaps = 44/369 (11%)
Query: 311 LRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKC 370
LE L L L + L S L++L++N N VQE+ + + L
Sbjct: 57 FTKLELLNLSSNVLYE--TLDLESLSTLRTLDLN----NNYVQELLVGP-SIETLHAANN 109
Query: 371 RVMRVSIR-CPQLEHLSLKRSN----MAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSC 425
+ RVS +++ L + + LD+ ++ A S
Sbjct: 110 NISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN-EIDTVNFAELAASS 168
Query: 426 PQLESLDMSNCSCVSDESLREI--ALSCANLRILNSSYC--PNISLESVRLPMLTVLQLH 481
LE L++ + ++ + A L+ L+ S + E +T + L
Sbjct: 169 DTLEHLNLQYNF------IYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLR 222
Query: 482 SCEGITSASMAAISHSYMLEVLELDN----CNLLTSVSLELPRLQNI-----------RL 526
+ + + A+ S LE +L C L + R+Q +
Sbjct: 223 NNK-LVLIE-KALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNE 280
Query: 527 VHCRKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQE 586
C + A + L + ++L + E L +E
Sbjct: 281 EECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQRE 340
Query: 587 VDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRFCSTSLVSLSLVGCRAITA 646
+D E + +V +L V + L +A+
Sbjct: 341 IDALK-EQYRTVIDQVTL---RKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQ 396
Query: 647 LELKCPILE 655
+EL+ E
Sbjct: 397 IELQHATEE 405
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 49.5 bits (118), Expect = 3e-06
Identities = 52/392 (13%), Positives = 114/392 (29%), Gaps = 53/392 (13%)
Query: 310 LLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINH----DQLRRL 365
+ + L A +K L+++ GN + +I +L L
Sbjct: 8 NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLS----GNPLSQISAADLAPFTKLELL 63
Query: 366 EITKCRVMRVS--IRCPQLEHLSLKRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAAT 423
++ + L L L +N Q +L P + L A+ +S ++ +
Sbjct: 64 NLSSNVLYETLDLESLSTLRTLDL-NNNYVQELLVGPSIETLHAANN-NISR----VSCS 117
Query: 424 SCPQLESLDMSNC--SCVSDE------SLREIALSCANLRILNSSYCPNISLESVRLPML 475
+++ ++N + + D ++ + L + +N + L
Sbjct: 118 RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAA------SSDTL 171
Query: 476 TVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADL 535
L L I + L+ L+L + N L + E + +
Sbjct: 172 EHLNLQYNF-IYDVKGQVVFAK--LKTLDLSS-NKLAFMGPEFQSAAGVT--------WI 219
Query: 536 NLRAMMLSSI--MVSNCAALHRINITSNSLQKLSLQK--QENLTSLALQCQCLQEVDLTD 591
+LR L I + L ++ N +L+ +N + Q ++++ +
Sbjct: 220 SLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQN 279
Query: 592 CESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRFCSTSLVSLSLVGCRAITALELKC 651
E T C L + D L +L+S +
Sbjct: 280 EEECTVPT-LGHYGAYCCEDLPAPFADRLIALKRKE---HALLSGQGSETERLECERENQ 335
Query: 652 PILEKVCLDGCD--HIESASFVPV-ALQSLNL 680
++ + + A +L
Sbjct: 336 ARQREIDALKEQYRTVIDQVTLRKQAKITLEQ 367
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 47.9 bits (114), Expect = 8e-06
Identities = 36/300 (12%), Positives = 82/300 (27%), Gaps = 32/300 (10%)
Query: 309 SLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINH-----DQLR 363
S + + + L ++ S ++ L++ N + + D L
Sbjct: 117 SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKL----NEIDTVNFAELAASSDTLE 172
Query: 364 RLEITKCRVMRV--SIRCPQLEHLSLKR---SNMAQAVLNCPLLHLLDIASCHKLSDAAI 418
L + + V + +L+ L L + M + + + + + KL I
Sbjct: 173 HLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNN-KLVL--I 229
Query: 419 RLAATSCPQLESLDMSNC--SCVSDESLREIALSCANLRILNSSYCPNISLESVRLPMLT 476
A LE D+ C + + + E +P L
Sbjct: 230 EKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLG 289
Query: 477 VLQLHSCEGITSASMAAI----SHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKF 532
+ CE + + + + L + L R + I + +
Sbjct: 290 HYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQ-- 347
Query: 533 ADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSL-ALQCQCLQEVDLTD 591
R + + A + +L + + L Q + +++L
Sbjct: 348 ----YRT--VIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQH 401
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 46.8 bits (111), Expect = 2e-05
Identities = 43/313 (13%), Positives = 89/313 (28%), Gaps = 45/313 (14%)
Query: 443 SLREIALSCANLRILNSSYCPNISLES---VRLPMLTVLQLHSCEGITSASMAAISHSYM 499
++ EI + +I + + + L L ++ S A ++
Sbjct: 1 AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNP-LSQISAADLAPFTK 59
Query: 500 LEVLELDNCNLLTSVS--LELPRLQNIRLVHCR--------KFADLNLRAMMLSSIMVSN 549
LE+L L + N+L L L+ + L + L+ +S + S
Sbjct: 60 LELLNLSS-NVLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSR 118
Query: 550 CAALHRINITSNSLQKL---SLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDG 606
I + +N + L + + L L+ + V+ +
Sbjct: 119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL-------------A 165
Query: 607 GGCPMLKSLVLDNCEGLTVV--RFCSTSLVSLSLVGCRAITALE---LKCPILEKVCLDG 661
L+ L L + V + L +L L + + + + + L
Sbjct: 166 ASSDTLEHLNLQYNF-IYDVKGQVVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRN 223
Query: 662 CD--HIESASFVPVALQSLNLG----ICPKLSTLGIEALHMVVLELKG-CGVLSDAYINC 714
IE A L+ +L C L + + + + + C
Sbjct: 224 NKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEEC 283
Query: 715 PLLTSLDASFCRC 727
+ T C
Sbjct: 284 TVPTLGHYGAYCC 296
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 62.4 bits (152), Expect = 4e-10
Identities = 48/390 (12%), Positives = 118/390 (30%), Gaps = 55/390 (14%)
Query: 300 IHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIP-IN 358
L K +S + E R F L + + I +
Sbjct: 121 ERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFS-DLIKDCINSDPQQKSIKKSS 179
Query: 359 HDQLRRLEITKCRVMRVSI-----RCPQLEHLSLKRSNMAQAVLNCPLLHLLDIASCHKL 413
L+ +I + + R +L + ++ A C + +
Sbjct: 180 RITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYM-GNSPFVAENICEAWENENSEYAQQY 238
Query: 414 SDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALS---CANLRILNSSYCPNISLESV 470
L + L +++ NC +L ++ ++++N + IS E +
Sbjct: 239 K--TEDLKWDNLKDLTDVEVYNCP-----NLTKLPTFLKALPEMQLINVACNRGISGEQL 291
Query: 471 R-----------LPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSV--SLE 517
+ + ++ + T ++ L +LE N L +
Sbjct: 292 KDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLY-NQLEGKLPAFG 350
Query: 518 -LPRLQNIRLVH-------------CRKFADLNLRAMMLSSI----MVSNCAALHRINIT 559
+L ++ L + + +L+ L I + + + I+ +
Sbjct: 351 SEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFS 410
Query: 560 SNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDN 619
N + + + + L + + ++L++ ++ E+F L S+ L
Sbjct: 411 YNEIGSVDGKNFDPLDPTPFKGINVSSINLSNN-QISKFPKELF---STGSPLSSINLMG 466
Query: 620 CEGLTVVRFCSTSLVSLSLVGCRAITALEL 649
LT + S + + +T+++L
Sbjct: 467 NM-LTEIPKNSLKDENENFKNTYLLTSIDL 495
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 57.0 bits (138), Expect = 2e-08
Identities = 62/455 (13%), Positives = 125/455 (27%), Gaps = 74/455 (16%)
Query: 311 LRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATL-GNGVQEIPINHDQLRRLEITK 369
+ L+L A+ + L+ L + N P E +
Sbjct: 80 NGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQ 139
Query: 370 CRVMRVSIRCPQLEHLSLKRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLE 429
MR+ + +++ + L I S + +I+ ++ +
Sbjct: 140 K--MRMHYQKTFVDYDPR---------EDFSDLIKDCINSDPQQK--SIKKSSRITLKDT 186
Query: 430 SLDMSNCSCVS-DESLREIALSCANLRILNSSYCPNISLESVRLPMLTVLQLHSCEGITS 488
+ + + +++ LR P ++ +
Sbjct: 187 QIGQLSNNITFVSKAVMR----LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTED 242
Query: 489 ASMAAISHSYMLEVLELDNCNLLTSVSLE---LPRLQNIRLVHCRKFADLNLRAMMLSSI 545
+ L +E+ NC LT + LP +Q I + R + L+ +
Sbjct: 243 LKWDNLKD---LTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALA 299
Query: 546 MVSNCAALHRINITSNSLQKL----SLQKQENLTSLAL-------------QCQCLQEVD 588
+ I I N+L+ SLQK + L L L ++
Sbjct: 300 DAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLN 359
Query: 589 LTDCESLTNSVCEVFSDGGGCPMLKSLVLD--------------NCEGLTVVRFCSTSLV 634
L +T G +++L + ++ + F +
Sbjct: 360 LAYN-QITEIPANFC---GFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIG 415
Query: 635 SLSLVGCRAITALELKCPILEKVCLDGCD---HIESASFVPVALQSLNLGICPKLSTLGI 691
S+ + K + + L + L S+NL L+ +
Sbjct: 416 SVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGN-MLTEIPK 474
Query: 692 EALHMVVLELKGCGVLSDAYINCPLLTSLDASFCR 726
+L K N LLTS+D F +
Sbjct: 475 NSLKDENENFK----------NTYLLTSIDLRFNK 499
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 50.8 bits (122), Expect = 1e-06
Identities = 46/291 (15%), Positives = 90/291 (30%), Gaps = 51/291 (17%)
Query: 311 LRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKC 370
++ L L QL A L SLN+ N + EIP N
Sbjct: 329 MKKLGMLECLYNQLEG-KLPAFGSEIKLASLNLA----YNQITEIPAN------------ 371
Query: 371 RVMRVSIRCPQLEHLSLKRSNM------AQAVLNCPLLHLLD-----IASCHKLSDAAIR 419
Q+E+LS N + ++ +D I S + +
Sbjct: 372 ----FCGFTEQVENLSF-AHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLD 426
Query: 420 LAATSCPQLESLDMSNC--------SCVSDESLREIALSCANLRILNSSYCPNISLESVR 471
+ S+++SN + L I L L + + + +
Sbjct: 427 PTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKN 486
Query: 472 LPMLTVLQLHSC--EGITSASMAAISHSYMLEVLELDNCNLLTSVSLE---LPRLQNIRL 526
+LT + L ++ + L ++L N + + L+ +
Sbjct: 487 TYLLTSIDLRFNKLTKLSDD--FRATTLPYLVGIDLSY-NSFSKFPTQPLNSSTLKGFGI 543
Query: 527 VHCRKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSL 577
+ R I + C +L ++ I SN ++K++ + N++ L
Sbjct: 544 RNQRDAQGNRTLREWPEGI--TLCPSLTQLQIGSNDIRKVNEKITPNISVL 592
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 62.0 bits (151), Expect = 4e-10
Identities = 46/282 (16%), Positives = 98/282 (34%), Gaps = 33/282 (11%)
Query: 311 LRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIP-INHDQLRRLEITK 369
L N+ A++L + + + +SL++ +++ P ++ L+ L +T
Sbjct: 284 LANVSAMSLAGVSI--KYLEDVPKHFKWQSLSII----RCQLKQFPTLDLPFLKSLTLTM 337
Query: 370 CRVMRVS--IRCPQLEHLSLKRSNM------AQAVLNCPLLHLLDIASCHKLSDAAIRLA 421
+ + P L +L L R+ + + + L L LD++ +
Sbjct: 338 NKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFN-GAII--MSAN 394
Query: 422 ATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNISLES---VRLPMLTVL 478
+L+ LD + + + + LS L L+ SY + L L L
Sbjct: 395 FMGLEELQHLDFQHST-LKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTL 453
Query: 479 QLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLR 538
++ + +++ L L+L C L L ++L LN+
Sbjct: 454 KMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQL--------LNMS 505
Query: 539 AMMLSSI---MVSNCAALHRINITSNSLQKLSLQKQENLTSL 577
L + + +L ++ + N ++ Q SL
Sbjct: 506 HNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSL 547
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 53.5 bits (129), Expect = 2e-07
Identities = 70/415 (16%), Positives = 130/415 (31%), Gaps = 58/415 (13%)
Query: 311 LRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINH--DQLRRLE-- 366
L +LE L +L + LK LNV N + + L L
Sbjct: 103 LTSLENLVAVETKLASLESFPIGQLITLKKLNVAH----NFIHSCKLPAYFSNLTNLVHV 158
Query: 367 ---------ITKCRVMRVSIRCPQLEHLSLKRSNMAQ---AVLNCPLLHLLDIASCHKLS 414
IT + + L + + + LH L + + S
Sbjct: 159 DLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTL-RGNFNS 217
Query: 415 DAAIRLAATSCPQLESLDMSNCSCVSDESLREIA------LSCANLRILNSSYCPNISLE 468
++ + L + + +L L + +Y + S +
Sbjct: 218 SNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDD 277
Query: 469 SVR---LPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIR 525
V+ L ++ + L I + + + + L + C L +L+LP L+++
Sbjct: 278 IVKFHCLANVSAMSLAGVS-IK--YLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLT 334
Query: 526 LVHCR-----KFADL-NLRAMMLS--SIMVSNCAALHRINITSNSLQKLSLQ--KQENLT 575
L + K L +L + LS ++ S C + ++ +NSL+ L L ++
Sbjct: 335 LTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYS--DLGTNSLRHLDLSFNGAIIMS 392
Query: 576 SLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNC--EGLTVVRFCS-TS 632
+ + + LQ +D + F L L + + F TS
Sbjct: 393 ANFMGLEELQHLDFQHSTLKRVTEFSAFL---SLEKLLYLDISYTNTKIDFDGIFLGLTS 449
Query: 633 LVSLSLVGCRAITALEL----KCPILEKVCLDGC--DHIESASFVP-VALQSLNL 680
L +L + G L + L C + I F LQ LN+
Sbjct: 450 LNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNM 504
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 5e-05
Identities = 53/318 (16%), Positives = 101/318 (31%), Gaps = 45/318 (14%)
Query: 423 TSCPQLESLDMSNC--SCVSDESLREIALSCANLRILNSSYCPNISLES---VRLPMLTV 477
++ +L+ LD+S C + D++ +L L + P S L L
Sbjct: 53 SNFSELQWLDLSRCEIETIEDKAWH----GLHHLSNLILTGNPIQSFSPGSFSGLTSLEN 108
Query: 478 LQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLE-----LPRLQNIRLVHCRKF 532
L + S I L+ L + + N + S L L L +
Sbjct: 109 LVAVET-KLASLESFPIGQLITLKKLNVAH-NFIHSCKLPAYFSNLTNLVH--------- 157
Query: 533 ADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDC 592
++L + +I V++ L + SL +SL + + A Q L E+ L
Sbjct: 158 --VDLSYNYIQTITVNDLQFLRENPQVNLSL-DMSLNPIDFIQDQAFQGIKLHELTLRGN 214
Query: 593 ESLTNSVCEVFSDGGGCPMLKSL-VLDNCEGLTVVRFCSTSLVSLSLVGCRAITALELKC 651
+ +N + + L L V G + G +T E +
Sbjct: 215 FNSSNIMKTCLQN------LAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRL 268
Query: 652 PILEKVCLDGCDHIESASFVPVA-LQSLNLGICPKLSTL--GIEALHMVVLELKGCGVLS 708
+ F +A + +++L + L + L + C +
Sbjct: 269 TYTNDF------SDDIVKFHCLANVSAMSLAGV-SIKYLEDVPKHFKWQSLSIIRCQLKQ 321
Query: 709 DAYINCPLLTSLDASFCR 726
++ P L SL + +
Sbjct: 322 FPTLDLPFLKSLTLTMNK 339
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 62.2 bits (150), Expect = 5e-10
Identities = 51/355 (14%), Positives = 104/355 (29%), Gaps = 96/355 (27%)
Query: 245 CRAAIVCRQWRAASAHED--FWRCLNFENRKIS---VEQFEDVCQRY-PNATEVNIYGAP 298
A VC ++ + FW LN +N +E + + + PN T + + +
Sbjct: 165 WVALDVCLSYKVQCKMDFKIFW--LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN 222
Query: 299 AIH---------------------LLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSM 337
LLV+ V + A L C +
Sbjct: 223 IKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLS--------------CKI 268
Query: 338 L---KSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIRCPQLEHLSLKRSNMAQ 394
L + V D I ++H + +T V + ++ L R +
Sbjct: 269 LLTTRFKQVTDFLSAATTTHISLDH---HSMTLTPDEVKSLLLKYLDCRPQDLPR----E 321
Query: 395 AVLNCPLLHLLDIASCHKLSDAAIR---LAATSCPQLESLDMSNC-SCVSDESLREIALS 450
+ P + IA + D +C +L ++ + + + + R++
Sbjct: 322 VLTTNPRRLSI-IAE--SIRDGLATWDNWKHVNCDKLTTI-IESSLNVLEPAEYRKMFDR 377
Query: 451 CANLRILNSSYCPNISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNL 510
+ + S +P +L L + I S M ++ + ++E
Sbjct: 378 LS---VFP---------PSAHIPT-ILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKES 424
Query: 511 LTSVSLELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQK 565
S+ + L + + N ALHR + ++ K
Sbjct: 425 TISI-------------P-----SIYLE----LKVKLENEYALHRSIVDHYNIPK 457
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 50.6 bits (120), Expect = 2e-06
Identities = 56/360 (15%), Positives = 110/360 (30%), Gaps = 112/360 (31%)
Query: 428 LESLDMSNCSCVSDESLREIALSCANLR-ILNSSYCPNISLESVRLPMLTVLQLHSCEGI 486
+++ D C V D + I LS + I+ S + ++RL L E +
Sbjct: 30 VDNFD---CKDVQD-MPKSI-LSKEEIDHIIMS---KDAVSGTLRL--FWTLLSKQEEMV 79
Query: 487 TSASMAAISHSYMLEVLELDNCNLLTSVSLEL--PRLQNIRLVHCR--------KFADLN 536
++ EVL ++ L++ + E P + + R FA N
Sbjct: 80 ---------QKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYN 130
Query: 537 ---------LRAMMLS-----------------SIMVSNCAALHR-----------INIT 559
LR +L + + + ++ +N+
Sbjct: 131 VSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLK 190
Query: 560 SNSLQKLSLQKQENLTSLALQCQCLQEVDLTD-----CESLTNSVCEVFSDGGGCPMLKS 614
+ + + L+ + L + D + S+ + + L
Sbjct: 191 NCNSPETVLEMLQKL-LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL-- 247
Query: 615 LVLDNCEGLTVVRFCSTSLVSLSLVGCRAITALELKCPIL-----EKVCLDGCDHIESAS 669
LVL N V + +A A L C IL ++V D + +A+
Sbjct: 248 LVLLN------V--QNA----------KAWNAFNLSCKILLTTRFKQV----TDFLSAAT 285
Query: 670 FVPVALQSLNLGICPKLS-TLGIEALHMVVLELK--GCGVLSDAYINCPLLTSLDASFCR 726
++L ++ + P +L ++ L +L N P S+ A R
Sbjct: 286 TTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLT------TN-PRRLSIIAESIR 338
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 61.6 bits (150), Expect = 6e-10
Identities = 73/483 (15%), Positives = 150/483 (31%), Gaps = 76/483 (15%)
Query: 300 IHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPI-- 357
+ L K + NL L L + + L +L+++ NG+ +
Sbjct: 85 LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSH----NGLSSTKLGT 140
Query: 358 --NHDQLRRLEITKCRVMRVS------IRCPQLEHLSLKRSNM----AQAVLNCPLLHLL 405
+ L+ L ++ ++ + L+ L L + + L L
Sbjct: 141 QVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGL 200
Query: 406 DIASCH-KLSDAAIRLAATSCPQLESLDMSNCSC--VSDESLREIALSCANLRILNSSYC 462
+ + S + + +L +SN S+ + L NL +L+ SY
Sbjct: 201 FLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLG--LKWTNLTMLDLSYN 258
Query: 463 P--NISLESVR-LPMLTVLQLHSCEGITSASMAAISHSYMLEVLEL-DNCNLLTSVSLEL 518
+ +S LP L L I ++ + + L L + + L
Sbjct: 259 NLNVVGNDSFAWLPQLEYFFLEYNN-IQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASL 317
Query: 519 PRLQNIRLVHCRKFADLNLRAMMLSSI---MVSNCAALHRINITSNSLQKLSLQKQENLT 575
P++ + + LN+ + I M + L ++++++ SL+ N T
Sbjct: 318 PKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNS---FTSLRTLTNET 374
Query: 576 SLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSL--------------VLDNCE 621
++L L ++LT ++ + FS L+ L E
Sbjct: 375 FVSLAHSPLHILNLTKN-KISKIESDAFS---WLGHLEVLDLGLNEIGQELTGQEWRGLE 430
Query: 622 GLTVVRFCSTSLVSL---SLVGCRAITALELKCPILEKVCLDGCDHIESASFVPVALQSL 678
+ + + L S ++ L L+ +V L D S L L
Sbjct: 431 NIFEIYLSYNKYLQLTRNSFALVPSLQRLMLR-----RVALKNVDSSPSPFQPLRNLTIL 485
Query: 679 NLGICPKLSTLGIEAL----HMVVLELKG-----------CGVLSDAYINCPLLTSLDAS 723
+L ++ + + L + +L+L+ G L L+
Sbjct: 486 DLSNN-NIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLE 544
Query: 724 FCR 726
Sbjct: 545 SNG 547
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 57.7 bits (140), Expect = 9e-09
Identities = 49/288 (17%), Positives = 91/288 (31%), Gaps = 41/288 (14%)
Query: 311 LRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKC 370
L+ LE L + + + LK L+++ + + ++ L +
Sbjct: 328 LKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLS----NSFTSLRTLTNETFVSLAHSP- 382
Query: 371 RVMRVSIRCPQLEHLSLKRSNM-----AQAVLNCPLLHLLDIASCHKLSDAAIRLAATSC 425
L L+L N + A L +LD+ ++
Sbjct: 383 -----------LHILNL-TKNKISKIESDAFSWLGHLEVLDLGLN-EIGQELTGQEWRGL 429
Query: 426 PQLESLDMSNC--SCVSDESLREIALSCANLRIL----NS-SYCPNISLESVRLPMLTVL 478
+ + +S ++ S +L+ L + + L LT+L
Sbjct: 430 ENIFEIYLSYNKYLQLTRNSFAL----VPSLQRLMLRRVALKNVDSSPSPFQPLRNLTIL 485
Query: 479 QLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLR 538
L + I + + + LE+L+L + NL P L LNL
Sbjct: 486 DLSNN-NIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLE 544
Query: 539 AMMLSSI---MVSNCAALHRINITSNSLQKL---SLQKQENLTSLALQ 580
+ I + + L I++ N+L L Q +L SL LQ
Sbjct: 545 SNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQ 592
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 57.3 bits (139), Expect = 1e-08
Identities = 71/382 (18%), Positives = 112/382 (29%), Gaps = 77/382 (20%)
Query: 380 PQLEHLSLKRSNM----AQAVLNCPLLHLLDIASCH--KLSDAAIRLAATSCPQLESLDM 433
+ L+L + + A L LD+ KL + P L+ L++
Sbjct: 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQ----KLPMLKVLNL 80
Query: 434 SNC--SCVSDESLREIALSCANLRILNSSYC-----PNISLESVRLPMLTVLQLHSCEGI 486
+ S +SD++ C NL L+ N L L L +
Sbjct: 81 QHNELSQLSDKTFA----FCTNLTELHLMSNSIQKIKNNPFVK--QKNLITLDLSHNG-L 133
Query: 487 TSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVH------------------ 528
+S + L+ L L N + S EL N L
Sbjct: 134 SSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHA 193
Query: 529 CRKFADLNLRAMMLSSIMVSN-CAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEV 587
+ L L + L + C L +I + SL L N T L L+ L +
Sbjct: 194 IGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTML 253
Query: 588 DLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRFCSTSLVSLSLVGCRAITAL 647
DL+ +L + F+ P L+ L+ L S SL G + L
Sbjct: 254 DLSYN-NLNVVGNDSFA---WLPQLEYFFLEYN--------NIQHLFSHSLHGLFNVRYL 301
Query: 648 ELKCPILEKVCLDGCDHIESASFVPVALQSLNLGICPKLSTLGIEALHMVVLELKGC--- 704
LK S +L ++ L L L ++
Sbjct: 302 NLK------------RSFTKQSISLASLPKIDDFSFQWLKCL-------EHLNMEDNDIP 342
Query: 705 GVLSDAYINCPLLTSLDASFCR 726
G+ S+ + L L S
Sbjct: 343 GIKSNMFTGLINLKYLSLSNSF 364
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 54.6 bits (132), Expect = 8e-08
Identities = 50/330 (15%), Positives = 106/330 (32%), Gaps = 52/330 (15%)
Query: 311 LRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKC 370
L LE L + F H+L ++ LN L + I+ L +++
Sbjct: 271 LPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLN-----LKRSFTKQSISLASLPKIDDFSF 325
Query: 371 RVMRVSIRCPQLEHLSLKRSNM----AQAVLNCPLLHLLDIASCHKLSDAAIR---LAAT 423
+ LEHL+++ +++ + L L +++ S + +
Sbjct: 326 Q------WLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSF-TSLRTLTNETFVSL 378
Query: 424 SCPQLESLDMSNC--SCVSDESLREIALSCANLRILN------SSYCPNISLESVRLPML 475
+ L L+++ S + ++ +L +L+ L +
Sbjct: 379 AHSPLHILNLTKNKISKIESDAFS----WLGHLEVLDLGLNEIGQELTGQEWRG--LENI 432
Query: 476 TVLQLHSCEGITSASMAAISHSYMLEVLELDNCNL--LTSVSLELPRLQNIRLVHCRKFA 533
+ L + + + + L+ L L L + S L+N+
Sbjct: 433 FEIYLSYNK-YLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLT-------- 483
Query: 534 DLNLRAMMLSSI---MVSNCAALHRINITSNSLQKLSLQKQENLTSLALQ-CQCLQEVDL 589
L+L +++I M+ L +++ N+L +L L+ L ++L
Sbjct: 484 ILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNL 543
Query: 590 TDCESLTNSVCEVFSDGGGCPMLKSLVLDN 619
EVF LK + L
Sbjct: 544 ESN-GFDEIPVEVF---KDLFELKIIDLGL 569
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 61.4 bits (149), Expect = 7e-10
Identities = 46/329 (13%), Positives = 101/329 (30%), Gaps = 53/329 (16%)
Query: 311 LRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKC 370
+ L L ++ A L L ++ N ++EIP +
Sbjct: 572 MVKLGLLDCVHNKV--RHLEAFGTNVKLTDLKLDY----NQIEEIPEDFCAF-------- 617
Query: 371 RVMRVSIRCPQLEHLSLKRSNM------AQAVLNCPLLHLLDIASCH---KLSDAAIRLA 421
Q+E L N + ++ +D + + + + +
Sbjct: 618 --------TDQVEGLGF-SHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMD 668
Query: 422 ATSCPQLESLDMSN--------CSCVSDESLREIALSCANLRILNSSYCPNISLESVRLP 473
++ +S + + I LS + + +
Sbjct: 669 DYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTY 728
Query: 474 MLTVLQLHSCEGITSASMA-AISHSYMLEVLELDNCNLLTSVSLE---LPRLQNIRLVHC 529
+LT + L + +TS S + L +++ N +S + +L+ + H
Sbjct: 729 LLTTIDLRFNK-LTSLSDDFRATTLPYLSNMDVSY-NCFSSFPTQPLNSSQLKAFGIRHQ 786
Query: 530 RKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDL 589
R + + I + C +L ++ I SN ++K+ + L L + +D+
Sbjct: 787 RDAEGNRILRQWPTGI--TTCPSLIQLQIGSNDIRKVDEKLTPQLYILDIADNPNISIDV 844
Query: 590 TD-CESLTNSVCEVFSDG----GGCPMLK 613
T C + + + D GC L
Sbjct: 845 TSVCPYIEAGMYVLLYDKTQDIRGCDALG 873
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 56.4 bits (136), Expect = 3e-08
Identities = 56/414 (13%), Positives = 115/414 (27%), Gaps = 88/414 (21%)
Query: 378 RCPQLEHLSL---KRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMS 434
+ +L+ LS + + + L + H++ ++ +L D+
Sbjct: 345 QLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLL 404
Query: 435 NCSCVSDESLREIA-LSCANLRILNSSYCPN----ISLESVRLPMLTVLQLHSCE----- 484
+ + ++ I S +L+ N IS RL L ++ +
Sbjct: 405 QDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDN 464
Query: 485 -------------GITSASMAAISHSYMLEVLELDNCNLLTSVSLE---LPRLQNIRLVH 528
+ S+ L +EL NC +T + LP LQ++ +
Sbjct: 465 IAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIAC 524
Query: 529 CRKFADLNLRAMMLSSI--MVSNCAALHRINITSNSLQKL----SLQKQENLTSLALQ-- 580
R + + + + N+L++ SLQK L L
Sbjct: 525 NR-GISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHN 583
Query: 581 ----------CQCLQEVDLTDC--ESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVV-- 626
L ++ L E + C ++ L + + L +
Sbjct: 584 KVRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCA------FTDQVEGLGFSHNK-LKYIPN 636
Query: 627 --RFCS-TSLVSLSLVGCRAITALELKCPILEKVCLDGCDHIESASFVPVALQSLNL--- 680
S + S+ + I + + + ++ L
Sbjct: 637 IFNAKSVYVMGSVDFSYNK-IGSEGRNISCSMD------------DYKGINASTVTLSYN 683
Query: 681 ----------GICPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASF 724
+ST+ + M + Y N LLT++D F
Sbjct: 684 EIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRF 737
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 61.2 bits (149), Expect = 8e-10
Identities = 52/298 (17%), Positives = 102/298 (34%), Gaps = 39/298 (13%)
Query: 309 SLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEIT 368
+ L N+ + +L + + + L + + G Q + L+RL T
Sbjct: 279 NCLTNVSSFSLVSVTIE--RVKDFSYNFGWQHLELVNCKFG---QFPTLKLKSLKRLTFT 333
Query: 369 KCRVMRVS--IRCPQLEHLSLKRSNM------AQAVLNCPLLHLLDIASCHKLSDAAIRL 420
+ + P LE L L R+ + +Q+ L LD++ + +
Sbjct: 334 SNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN-GVIT--MSS 390
Query: 421 AATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNISLESVR----LPMLT 476
QLE LD + + + S + LS NL L+ S+ + + L L
Sbjct: 391 NFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHT-HTRVAFNGIFNGLSSLE 448
Query: 477 VLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLN 536
VL++ + + L L+L C L L ++++ LN
Sbjct: 449 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV--------LN 500
Query: 537 LRAMMLSSI---MVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTD 591
+ S+ +L ++ + N + Q+ ++ S L ++LT
Sbjct: 501 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSS------LAFLNLTQ 552
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 55.8 bits (135), Expect = 3e-08
Identities = 69/463 (14%), Positives = 135/463 (29%), Gaps = 75/463 (16%)
Query: 309 SLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPI----NHDQLRR 364
L+ L L R ++ A S L +L + GN +Q + + L++
Sbjct: 49 FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT----GNPIQSLALGAFSGLSSLQK 104
Query: 365 LEITKCRVMRV---SIR-CPQLEHLSL-----KRSNMAQAVLNCPLLHLLDIASCH--KL 413
L + + + I L+ L++ + + + N L LD++S +
Sbjct: 105 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164
Query: 414 SDAAIRLAATSCPQLESLDMSNC-------SCVSDESLREIALSCANLRILNSSYCPNIS 466
+R+ SLD+S + L ++ L + C
Sbjct: 165 YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQ-G 223
Query: 467 LESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRL 526
L + + L + + + + +A+ L + E L + + +
Sbjct: 224 LAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTN 283
Query: 527 VHCRKFADLNLRAMMLSSIM-VSNCAALHRINITSNSLQKLSLQKQENLTSLAL------ 579
V +L ++ + + S + + + + K ++L L
Sbjct: 284 VSS-----FSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGG 338
Query: 580 ------QCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNC--EGLTVVRFCST 631
L+ +DL+ L+ C SD G LK L L ++
Sbjct: 339 NAFSEVDLPSLEFLDLSRN-GLSFKGCCSQSD-FGTTSLKYLDLSFNGVITMSSNFLGLE 396
Query: 632 SLVSLSLVGCRAITALELKCPILEKVCLDGCDHIESASFVPVALQSLNLGICPKLSTLGI 691
L L L + L L++
Sbjct: 397 QLEHLDFQHSN----------------LKQMSEFSVFLSLR-NLIYLDISHT-HTRVAFN 438
Query: 692 EAL----HMVVLELKGC----GVLSDAYINCPLLTSLDASFCR 726
+ VL++ G L D + LT LD S C+
Sbjct: 439 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 481
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 59.6 bits (145), Expect = 1e-09
Identities = 54/284 (19%), Positives = 98/284 (34%), Gaps = 41/284 (14%)
Query: 381 QLEHLSLKRSNMAQAVLNCPLLHLLDIA--SCHKLSDAAIRLAATSCPQLESLDMSNCSC 438
Q + N + + I + L A L + P +L++ +
Sbjct: 34 QWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPL 93
Query: 439 VSDESLREIALSCANLRILNSSYCPNISLESV-----RLPMLTVLQLHSCEGITS--ASM 491
+ A ++L+ + L + + L L L + + AS+
Sbjct: 94 ---PQFPDQAFRLSHLQHMTIDAA---GLMELPDTMQQFAGLETLTLARNP-LRALPASI 146
Query: 492 AAISHSYMLEVLELDNCNLLTSVSLELPRLQN-IRLVHCRKFADLNLRAMMLSSI--MVS 548
A+++ L L + C LT + L L L + S+ ++
Sbjct: 147 ASLNR---LRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIA 203
Query: 549 NCAALHRINITSNSLQKL--SLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDG 606
N L + I ++ L L ++ +L L +E+DL C +L + +F
Sbjct: 204 NLQNLKSLKIRNSPLSALGPAI---HHLPKL-------EELDLRGCTALR-NYPPIF--- 249
Query: 607 GGCPMLKSLVLDNCEGLTVV--RFCS-TSLVSLSLVGCRAITAL 647
GG LK L+L +C L + T L L L GC ++ L
Sbjct: 250 GGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRL 293
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 57.6 bits (140), Expect = 5e-09
Identities = 48/307 (15%), Positives = 87/307 (28%), Gaps = 74/307 (24%)
Query: 442 ESLREIALSCANLRILNSSYCPNI-SLESV--RLPMLTVLQLHSCEGITSASMAAISHSY 498
S + L + V + + ++S
Sbjct: 2 GSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWR-----QANSN 56
Query: 499 MLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAMMLSSI--MVSNCAALHRI 556
++ L + + L V L LR++ L + L +
Sbjct: 57 NPQIETR-TGRALKATADLLEDATQPGRVA------LELRSVPLPQFPDQAFRLSHLQHM 109
Query: 557 NITSNSLQKL--SLQKQENLTSLAL-------------QCQCLQEVDLTDCESLTN---- 597
I + L +L ++Q+ L +L L L+E+ + C LT
Sbjct: 110 TIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEP 169
Query: 598 -SVCEVFSDGGGCPMLKSLVLDNCE------------GLTV--VRFCS-----------T 631
+ + + G L+SL L+ L +R
Sbjct: 170 LASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLP 229
Query: 632 SLVSLSLVGCRAITAL--EL-KCPILEKVCLDGCDHIESASFVP------VALQSLNLGI 682
L L L GC A+ L+++ L C ++ + +P L+ L+L
Sbjct: 230 KLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLT---LPLDIHRLTQLEKLDLRG 286
Query: 683 CPKLSTL 689
C LS L
Sbjct: 287 CVNLSRL 293
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 48.4 bits (116), Expect = 5e-06
Identities = 50/264 (18%), Positives = 95/264 (35%), Gaps = 46/264 (17%)
Query: 338 LKSLNVNDATLGNGVQEIPI---NHDQLRRLEITKCRVMRV--SI-RCPQLEHLSLKRSN 391
+L + + + P L+ + I +M + ++ + LE L+L R+
Sbjct: 83 RVALELR----SVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNP 138
Query: 392 MA---QAVLNCPLLHLLDIASCHKLS-------DAAIRLAATSCPQLESLDMSNCSCVSD 441
+ ++ + L L I +C +L+ L+SL +
Sbjct: 139 LRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGI--- 195
Query: 442 ESL-REIALSCANLRILNSSYCPNISL-ESV-RLPMLTVLQLHSCEGITS--ASMAAISH 496
SL IA + NL+ L P +L ++ LP L L L C + + +
Sbjct: 196 RSLPASIA-NLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAP 254
Query: 497 SYMLEVLELDNCNLLTSVSLE---LPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAAL 553
L+ L L +C+ L ++ L+ L +L+ + L C + L S I + A
Sbjct: 255 ---LKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP------SLI--AQLPAN 303
Query: 554 HRINITSNSLQKLSLQKQENLTSL 577
I + + +L Q +
Sbjct: 304 CIILVPPHLQAQLD---QHRPVAR 324
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 44.9 bits (107), Expect = 6e-05
Identities = 59/315 (18%), Positives = 98/315 (31%), Gaps = 82/315 (26%)
Query: 488 SASMAAISHSYMLEVLELDNCNLLTSV--------------------SLELPRLQNIRL- 526
+S HS E L L + N ++
Sbjct: 2 GSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIE 61
Query: 527 -VHCRKFAD---------------LNLRAMMLSSI--MVSNCAALHRINITSNSLQKL-- 566
R L LR++ L + L + I + L +L
Sbjct: 62 TRTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPD 121
Query: 567 SLQKQENLTSLAL-------------QCQCLQEVDLTDCESLTN-----SVCEVFSDGGG 608
++Q+ L +L L L+E+ + C LT + + + G
Sbjct: 122 TMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQG 181
Query: 609 CPMLKSLVLDNCEGLTVV--RFCS-TSLVSLSLVGCRAITAL--EL-KCPILEKVCLDGC 662
L+SL L+ G+ + + +L SL + ++AL + P LE++ L GC
Sbjct: 182 LVNLQSLRLEWT-GIRSLPASIANLQNLKSLKIRNSP-LSALGPAIHHLPKLEELDLRGC 239
Query: 663 DHIESASFVP------VALQSLNLGICPKLSTL--GIEAL-HMVVLELKGCGVLS---DA 710
+ + P L+ L L C L TL I L + L+L+GC LS
Sbjct: 240 TALRN---YPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSL 296
Query: 711 YINCPLLTSLDASFC 725
P +
Sbjct: 297 IAQLPANCIILVPPH 311
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 60.4 bits (147), Expect = 1e-09
Identities = 63/376 (16%), Positives = 126/376 (33%), Gaps = 46/376 (12%)
Query: 310 LLRNLEALTLGRGQLGDAFFHAL-ADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEIT 368
L R L L L L L+SL + N + E+P L+ L +
Sbjct: 69 LDRQAHELELNNLGLSS-----LPELPPHLESLVAS----CNSLTELPELPQSLKSLLVD 119
Query: 369 KCRVMRVSIRCPQLEHLSLKRSNMAQ--AVLNCPLLHLLDIASCHKLSDAAIRLAATSCP 426
+ +S P LE+L + + + + + N L ++D+ + ++ P
Sbjct: 120 NNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNS------LKKLPDLPP 173
Query: 427 QLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNISLESVRLPMLTVLQLHSCEGI 486
LE + N E L E+ + L + + ++ L + + +
Sbjct: 174 SLEFIAAGNNQL---EELPELQ-NLPFLTAIYADNN-SLKKLPDLPLSLESIVAGNNI-L 227
Query: 487 TSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAMMLSSIM 546
+ + + L + DN NLL ++ P L+ + + DL L+ +
Sbjct: 228 E--ELPELQNLPFLTTIYADN-NLLKTLPDLPPSLEALNVRDNY-LTDLPELPQSLTFLD 283
Query: 547 VSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDC--ESLTNSVCEVFS 604
VS ++ +L L+ + SL L+E+++++ L
Sbjct: 284 VSEN-IFSGLSELPPNLYYLNASS-NEIRSLCDLPPSLEELNVSNNKLIELPALPPR--- 338
Query: 605 DGGGCPMLKSLVLDNCEGLTVVRFCSTSLVSLSLVGCRAITALELKCPILEKVCLDGCDH 664
L+ L+ L V +L L + + +E L H
Sbjct: 339 -------LERLIASFNH-LAEVPELPQNLKQLHVEYNP-LREFPDIPESVED--LRMNSH 387
Query: 665 IESASFVPVALQSLNL 680
+ +P L+ L++
Sbjct: 388 LAEVPELPQNLKQLHV 403
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 55.8 bits (135), Expect = 3e-08
Identities = 56/364 (15%), Positives = 104/364 (28%), Gaps = 72/364 (19%)
Query: 378 RCPQLEHLSLKRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCS 437
S + + A RL Q L+++N
Sbjct: 32 NVKSKTEYYNAWSE---------WERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLG 82
Query: 438 --------------CVSDESLREIALSCANLRILNSSYCPNISLESVRLPMLTVLQLHSC 483
S SL E+ +L+ L +L + P+L L + +
Sbjct: 83 LSSLPELPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDL-PPLLEYLGVSNN 141
Query: 484 EGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAMMLS 543
+ + + +S L+++++DN N L + P L+ + L
Sbjct: 142 Q-LEKLP--ELQNSSFLKIIDVDN-NSLKKLPDLPPSLEF-----------IAAGNNQLE 186
Query: 544 SI-MVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEV 602
+ + N L I +N +L L L+ + + L
Sbjct: 187 ELPELQNLPFLTAIYADNN-----------SLKKLPDLPLSLESIVAGNNI-LEE----- 229
Query: 603 FSDGGGCPMLKSLVLDNCEGLTVVRFCSTSLVSLSLVGCRAITALELKCPILEKVCLDGC 662
+ P L ++ DN L + SL +L++ +T L L + +
Sbjct: 230 LPELQNLPFLTTIYADNNL-LKTLPDLPPSLEALNVRDNY-LTDLPELPQSLTFLDVSEN 287
Query: 663 DHIESASFVPVALQSLNLGICPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDA 722
S +P L LN ++ +L + L + L L A
Sbjct: 288 -IFSGLSELPPNLYYLNASSN-EIRSLCDLPPSLEELNVSNN-----------KLIELPA 334
Query: 723 SFCR 726
R
Sbjct: 335 LPPR 338
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 6e-06
Identities = 40/232 (17%), Positives = 77/232 (33%), Gaps = 34/232 (14%)
Query: 309 SLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEIT 368
L +LE++ G L + L + L ++ + N ++ +P L L +
Sbjct: 212 DLPLSLESIVAGNNILEE--LPELQNLPFLTTIYAD----NNLLKTLPDLPPSLEALNVR 265
Query: 369 KCRVMRVSIRCPQLEHLSLKRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQL 428
+ + L L + + + P L+ L+ S IR P L
Sbjct: 266 DNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLN------ASSNEIRSLCDLPPSL 319
Query: 429 ESLDMSNCS--------------CVSDESLREIALSCANLRILNSSYCPNISLESVRLPM 474
E L++SN S L E+ NL+ L+ Y P +
Sbjct: 320 EELNVSNNKLIELPALPPRLERLIASFNHLAEVPELPQNLKQLHVEYNPLREFPDI-PES 378
Query: 475 LTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRL 526
+ L+++S L+ L ++ N L ++++R+
Sbjct: 379 VEDLRMNSHLAEVPELPQN------LKQLHVET-NPLREFPDIPESVEDLRM 423
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 58.6 bits (142), Expect = 3e-09
Identities = 50/309 (16%), Positives = 94/309 (30%), Gaps = 70/309 (22%)
Query: 306 KAVSLLRNLEALTLGRGQLGD----AFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQ 361
+ +++ + L +G +A L+ +D G EIP
Sbjct: 26 AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRL 85
Query: 362 LRRLEITKCRVMRVSIRCPQLEHLSLKRSN--------MAQAVLNCPLLHLLDIASCH-- 411
L ++ ++CP+L + L + + + L L + +
Sbjct: 86 L----------LQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLG 135
Query: 412 ---------KLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIAL---SCANLRILNS 459
L + A+ A + P L S+ + + S++E A S L +
Sbjct: 136 PQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR-LENGSMKEWAKTFQSHRLLHTVKM 194
Query: 460 SYCPNISLESVRL---------PMLTVLQLHSCEGITSASMAAIS----HSYMLEVLELD 506
I E + L VL L T +A++ L L L+
Sbjct: 195 VQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDNT-FTHLGSSALAIALKSWPNLRELGLN 252
Query: 507 NCNL----LTSVSLELPRLQNIRLVHCRKFADLNLR--------AMMLSSIMVSNCAALH 554
+C L +V +L+NI L L L+ L +++ L
Sbjct: 253 DCLLSARGAAAVVDAFSKLENIGLQT------LRLQYNEIELDAVRTLKTVIDEKMPDLL 306
Query: 555 RINITSNSL 563
+ + N
Sbjct: 307 FLELNGNRF 315
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 57.6 bits (139), Expect = 9e-09
Identities = 54/328 (16%), Positives = 109/328 (33%), Gaps = 65/328 (19%)
Query: 311 LRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIP----INHDQLRRLE 366
L N + +T + L ++ LN+N ++EI +++L
Sbjct: 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLN----DLQIEEIDTYAFAYAHTIQKLY 105
Query: 367 ITKCRVMRVS----IRCPQLEHLSLKRSNM-----AQAVLNCPLLHLLDIASCH--KLSD 415
+ + + P L L L N N P L L +++ + ++ D
Sbjct: 106 MGFNAIRYLPPHVFQNVPLLTVLVL-ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIED 164
Query: 416 AAIRLAATSCPQLESLDMSNC--SCVSD---ESLREIALS---------CANLRILNSSY 461
+ + L++L +S+ + V SL +S + L++S+
Sbjct: 165 DTFQ----ATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASH 220
Query: 462 CPNISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLE---- 517
+ LT+L+L +T + + + L ++L N L +
Sbjct: 221 NSINVVRGPVNVELTILKLQHNN-LTDTA--WLLNYPGLVEVDLSY-NELEKIMYHPFVK 276
Query: 518 LPRLQNIRLVHCR------KFADL-NLRAMMLSS-------IMVSNCAALHRINITSNSL 563
+ RL+ + + + R + L+ + LS L + + NS+
Sbjct: 277 MQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSI 336
Query: 564 QKLSLQKQENLTSLAL-----QCQCLQE 586
L L L +L L C L+
Sbjct: 337 VTLKLSTHHTLKNLTLSHNDWDCNSLRA 364
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 57.2 bits (138), Expect = 1e-08
Identities = 52/295 (17%), Positives = 100/295 (33%), Gaps = 48/295 (16%)
Query: 309 SLLRNLEALTLGRGQLGDAFFHAL-ADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEI 367
+L L L + QL +L L L++ N + +P L +L I
Sbjct: 78 ALPPELRTLEVSGNQL-----TSLPVLPPGLLELSI----FSNPLTHLPALPSGLCKLWI 128
Query: 368 TKCRVMRVSIRCPQLEHLSLKRSNMAQAVLNCPLLHLLD-IASCHKLSDAAIRLAA--TS 424
++ + + P L+ LS+ + L L + KL +L +
Sbjct: 129 FGNQLTSLPVLPPGLQELSV---------SDNQLASLPALPSELCKLWAYNNQLTSLPML 179
Query: 425 CPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNISLESVRLPMLTVLQLHSCE 484
L+ L +S+ L + + L L + SL + L L +
Sbjct: 180 PSGLQELSVSDNQ------LASLPTLPSELYKLWAYNNRLTSLPA-LPSGLKELIVSGNR 232
Query: 485 GITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAMMLSS 544
+TS S L+ L + N LTS+ + L + L++ L+
Sbjct: 233 -LTSLP-VLPSE---LKELMVSG-NRLTSLPMLPSGLLS-----------LSVYRNQLTR 275
Query: 545 I--MVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTN 597
+ + + ++ +N+ N L + +LQ +TS + D+ +
Sbjct: 276 LPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRE 330
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 57.0 bits (138), Expect = 1e-08
Identities = 71/446 (15%), Positives = 133/446 (29%), Gaps = 86/446 (19%)
Query: 311 LRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKC 370
L +LE L L L S LK LN+ GN Q + + L
Sbjct: 73 LGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLM----GNPYQTLGVTSL-FPNL----- 122
Query: 371 RVMRVSIRCPQLEHLSLKRSNMAQAV-----LNCPLLHLLDIASC--HKLSDAAIRLAAT 423
L+ L + + L+ L+I + +++
Sbjct: 123 ---------TNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLK---- 169
Query: 424 SCPQLESLDMSNCSCVSDESLREIALSC-ANLRILNSSYCPNISLESVRLPMLTVLQLHS 482
S + L + L EI +++R L + LP+ V
Sbjct: 170 SIRDIHHLTLHLSES---AFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMK 226
Query: 483 CEGITSASMAAISHSYM---------LEVLELDNCNLLTSVSL---ELPRLQNIRLVHCR 530
+ + S + + L +E D+C L E + + V
Sbjct: 227 KLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETV 286
Query: 531 KFADLNLRAMMLSSI---MVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEV 587
L++ L + S + RI + ++ + + ++L S L+ +
Sbjct: 287 TIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKS-------LEFL 339
Query: 588 DLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRFCS------TSLVSLSLVGC 641
DL++ + + + G P L++LVL L ++ +L SL +
Sbjct: 340 DLSEN-LMVEEYLKNSACKGAWPSLQTLVLSQNH-LRSMQKTGEILLTLKNLTSLDISRN 397
Query: 642 RAITALELKCPILEKVCLDGCDHIESASFVPVALQSLNLGICPKLSTLGIEALHMV-VLE 700
+ C EK ++ LNL + + + VL+
Sbjct: 398 T-FHPMPDSCQWPEK------------------MRFLNLSST-GIRVVKTCIPQTLEVLD 437
Query: 701 LKGCGVLSDAYINCPLLTSLDASFCR 726
+ L + P L L S +
Sbjct: 438 VSNNN-LDSFSLFLPRLQELYISRNK 462
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 55.1 bits (133), Expect = 5e-08
Identities = 60/426 (14%), Positives = 129/426 (30%), Gaps = 60/426 (14%)
Query: 267 LNFENRKISVEQFEDVCQRYPNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGD 326
LN + N + I + + L +L L + L +
Sbjct: 103 LNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRN 162
Query: 327 AFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIRCPQLEHLS 386
+L + L ++ + ++ +R LE+ ++ Q L
Sbjct: 163 YQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDT-----NLARFQFSPLP 217
Query: 387 LKRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLRE 446
+ + L L D + + +L ++ +C
Sbjct: 218 VDEVSSPMKKLAFRGSVLTDESFNE------LLKLLRYILELSEVEFDDC---------- 261
Query: 447 IALSCANLRILNSSYCPNIS-LESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLEL 505
+ L N S +S L V + L + + S ++ + +
Sbjct: 262 ---TLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFY-LFYDLSTVYSLLEKVKRITV 317
Query: 506 DNCNLLT---SVSLELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAALHRINITSNS 562
+N + S S L L+ + L + L+ +S +L + ++ N
Sbjct: 318 ENSKVFLVPCSFSQHLKSLEFLDLSEN-LMVEEYLK----NSACKGAWPSLQTLVLSQNH 372
Query: 563 LQKLSLQKQ-----ENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVL 617
L+ + + +NLTSL + + C+ ++ L L
Sbjct: 373 LRSMQKTGEILLTLKNLTSLDISRNTFHPMP-DSCQWPEK--------------MRFLNL 417
Query: 618 DNCEGLTVVRFCS-TSLVSLSLVGCRAITALELKCPILEKVCLDGC--DHIESASFVPVA 674
+ G+ VV+ C +L L + + + L P L+++ + + AS P
Sbjct: 418 SST-GIRVVKTCIPQTLEVLDVSNNN-LDSFSLFLPRLQELYISRNKLKTLPDASLFP-V 474
Query: 675 LQSLNL 680
L + +
Sbjct: 475 LLVMKI 480
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 2e-05
Identities = 52/362 (14%), Positives = 107/362 (29%), Gaps = 52/362 (14%)
Query: 376 SIRCPQLEHLSLKRSNMAQAVLNCPL-LHLLDIASCH--KLSDAAIRLAATSCPQLESLD 432
S+ C + + + LD++ + +R +C L+ L
Sbjct: 1 SLSCDASGVCDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLR----ACANLQVLI 56
Query: 433 MSNCSCVSDESLREIALSCANLRILNSSYCPNISLESVRLPMLTVLQLHSCEGITSASMA 492
+ + + + + L L L L ++S S +
Sbjct: 57 LKSS----------------RINTIEGDAFYS-------LGSLEHLDLSDNH-LSSLSSS 92
Query: 493 AISHSYMLEVLELDNCNLLTSVSL-----ELPRLQNIRLVHCRKFADLNLRAMMLSSIMV 547
L+ L L N ++ + L LQ +R+ + + I
Sbjct: 93 WFGPLSSLKYLNLMG-NPYQTLGVTSLFPNLTNLQTLRIGN-------VETFSEIRRIDF 144
Query: 548 SNCAALHRINITSNSLQKL---SLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFS 604
+ +L+ + I + SL+ SL+ ++ L L + + L++
Sbjct: 145 AGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELR 204
Query: 605 DGGGCPMLKSLVLDNCEGLTVVRFCSTSLVSLSLVGCRAITALELKCPILEKVCLDGCDH 664
D + L E + ++ + L+ + L L +V D C
Sbjct: 205 DTNLA-RFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTL 263
Query: 665 IESASFVPVALQSLNLGICPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASF 724
F P ++ K+ T+ I LH+ L LS Y + +
Sbjct: 264 NGLGDFNPSESDVVSEL--GKVETVTIRRLHIPQFYLF--YDLSTVYSLLEKVKRITVEN 319
Query: 725 CR 726
+
Sbjct: 320 SK 321
|
| >3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Length = 312 | Back alignment and structure |
|---|
Score = 54.7 bits (131), Expect = 4e-08
Identities = 11/42 (26%), Positives = 14/42 (33%)
Query: 226 DLTDDLLHMVFSFLDYVDLCRAAIVCRQWRAASAHEDFWRCL 267
L D+ + SFL DLC+ W WR
Sbjct: 7 RLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWRYF 48
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 53.7 bits (130), Expect = 9e-08
Identities = 53/284 (18%), Positives = 115/284 (40%), Gaps = 42/284 (14%)
Query: 306 KAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPI--NHDQLR 363
+ + L NLE L L Q+ D L++ L +L + N + +I N LR
Sbjct: 60 QGIEYLTNLEYLNLNGNQITD--ISPLSNLVKLTNLYIGT----NKITDISALQNLTNLR 113
Query: 364 RLEITKCRVMRVS--IRCPQLEHLSL---KRSNMAQAVLNCPLLHLLDIASCHKLSD-AA 417
L + + + +S ++ L+L + + N L+ L + K+ D
Sbjct: 114 ELYLNEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTES-KVKDVTP 172
Query: 418 IRLAATSCPQLESLDMSNCSCVSDESLREI-ALS-CANLRILNSSYCPNISLESVR-LPM 474
I + L SL ++ + +I L+ +L + + V +
Sbjct: 173 I----ANLTDLYSLSLNYNQ------IEDISPLASLTSLHYFTAYVNQITDITPVANMTR 222
Query: 475 LTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFAD 534
L L++ + + IT ++ +++ L LE+ N ++ ++ + L ++
Sbjct: 223 LNSLKIGNNK-ITD--LSPLANLSQLTWLEIGT-NQISDIN-AVKDLTKLK--------M 269
Query: 535 LNLRAMMLSSI-MVSNCAALHRINITSNSLQKLSLQKQENLTSL 577
LN+ + +S I +++N + L+ + + +N L ++ LT+L
Sbjct: 270 LNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNL 313
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 1e-06
Identities = 62/370 (16%), Positives = 114/370 (30%), Gaps = 55/370 (14%)
Query: 401 LLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNC--SCVSDESLREIALSCANLRILN 458
D+ + D + + + N + L S + +LN
Sbjct: 20 DCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLD----SFRQVELLN 75
Query: 459 SSYCPNISLES---VRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVS 515
+ +++ + L + I + +L VL L+ N L+S+
Sbjct: 76 LNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLTVLVLER-NDLSSLP 133
Query: 516 LE----LPRLQNIRL-------------VHCRKFADLNLRAMMLSSIMVSNCAALHRINI 558
P+L + + +L L + L+ + +S +L N+
Sbjct: 134 RGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANV 193
Query: 559 TSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLT------NSVCEVFSDGGGCPML 612
+ N L +L + L + V LT N++ + + P L
Sbjct: 194 SYNLLS--TLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT-AWLLNYPGL 250
Query: 613 KSLVLDNCEGLTVVRFCS----TSLVSLSLVGCRAITALEL---KCPILEKVCLDGC--D 663
+ L E L + + L L + R + AL L P L+ + L
Sbjct: 251 VEVDLSYNE-LEKIMYHPFVKMQRLERLYISNNR-LVALNLYGQPIPTLKVLDLSHNHLL 308
Query: 664 HIESASFVPVALQSLNLGICPKLSTLGIEALH-MVVLELKG----CGVLSDAYINCPLLT 718
H+E L++L L + TL + H + L L C L + N
Sbjct: 309 HVERNQPQFDRLENLYLDHN-SIVTLKLSTHHTLKNLTLSHNDWDCNSLRALFRNVARPA 367
Query: 719 SLDAS-FCRC 727
DA C+
Sbjct: 368 VDDADQHCKI 377
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362 | Back alignment and structure |
|---|
Score = 50.0 bits (118), Expect = 1e-06
Identities = 30/185 (16%), Positives = 59/185 (31%), Gaps = 26/185 (14%)
Query: 357 INHDQLRRLEITKCRVMRVSIRCPQLEHLSLKR-SNMAQAVLNCPLLHLLDIASCHKLSD 415
I+ ++ I + + V P L +L +K +N++ P L L+I S
Sbjct: 149 IDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDS 208
Query: 416 AAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNISLESVRLPML 475
+ + P LE L + E ++ + R P L
Sbjct: 209 VVEDILGSDLPNLEKLVLYVGV--------EDYGFDGDMNVFRP------LFSKDRFPNL 254
Query: 476 TVLQLHSCEGITSASMAAISHSYM---LEVLELDNCNL-------LTSVSLELPRLQNIR 525
L + E + + S + LE +++ L L ++ L+ I
Sbjct: 255 KWLGIVDAE-EQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFIN 313
Query: 526 LVHCR 530
+ +
Sbjct: 314 MKYNY 318
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 48.8 bits (117), Expect = 3e-06
Identities = 43/321 (13%), Positives = 100/321 (31%), Gaps = 47/321 (14%)
Query: 443 SLREIALSCANLRILNSSYCPNISLES---VRLPMLTVLQLHSCEGITSASMAAISHSYM 499
++ EI + +I + + + L L ++ S A ++
Sbjct: 1 AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNP-LSQISAADLAPFTK 59
Query: 500 LEVLELDNCNLLTSVS--LELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAALHRIN 557
LE+L L + N+L L L+ + L + + + ++ ++
Sbjct: 60 LELLNLSS-NVLYETLDLESLSTLRTLDLNNNY-----------VQEL--LVGPSIETLH 105
Query: 558 ITSNSLQKLSLQKQENLTSLALQC---QCLQEVDLTDCESLT------NSVCEVFSDG-- 606
+N++ ++S + + ++ L L+++D + N + V
Sbjct: 106 AANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA 165
Query: 607 GGCPMLKSLVLDNCEGLTVV--RFCSTSLVSLSLVGCRAITALE---LKCPILEKVCLDG 661
L+ L L + V + L +L L + + + + + L
Sbjct: 166 ASSDTLEHLNLQYNF-IYDVKGQVVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRN 223
Query: 662 CD--HIESASFVPVALQSLNLG------ICPKLSTLGIEALHMVVLE-LKGCGVLSDAYI 712
IE A L+ +L + + + V + +K ++
Sbjct: 224 NKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEEC 283
Query: 713 NCPLLTSLDASFCRCVASLFF 733
P L A C + + F
Sbjct: 284 TVPTLGHYGAYCCEDLPAPFA 304
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 4e-05
Identities = 51/299 (17%), Positives = 98/299 (32%), Gaps = 68/299 (22%)
Query: 311 LRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKC 370
+ + L A +K L+++ GN + +I L
Sbjct: 9 GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLS----GNPLSQIS--AADLAPF----- 57
Query: 371 RVMRVSIRCPQLEHLSLKRSN---MAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQ 427
+LE L+L SN + + L LD+ + + + L P
Sbjct: 58 ---------TKLELLNL-SSNVLYETLDLESLSTLRTLDLNNN-YVQE----LL--VGPS 100
Query: 428 LESLDMSNC--SCVSDESLREIALSCANLRILNSSYCPNISLESV---RLPMLTVLQLHS 482
+E+L +N S VS + + + + L + + L L
Sbjct: 101 IETLHAANNNISRVSCSRGQ-------GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKL 153
Query: 483 CEGITSASMAA-ISHSYMLEVLELDNCNLLTSVSLE--LPRLQNIRLVHCRKFADLNLRA 539
E I + + A + S LE L L N + V + +L+ + L +
Sbjct: 154 NE-IDTVNFAELAASSDTLEHLNLQY-NFIYDVKGQVVFAKLKTLDLSSNK--------- 202
Query: 540 MMLSSI--MVSNCAALHRINITSNSLQKL--SLQKQENLTSLAL-----QCQCLQEVDL 589
L+ + + A + I++ +N L + +L+ +NL L C L++
Sbjct: 203 --LAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFS 259
|
| >2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A Length = 297 | Back alignment and structure |
|---|
Score = 48.0 bits (113), Expect = 5e-06
Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 226 DLTDDLLHMVFSFLDYVDLCRAA-IVCRQWRAASAHEDFWRCL 267
+L + LL V + L +L +A +VC +W+ W
Sbjct: 53 ELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGAPLWLLK 95
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 48.2 bits (115), Expect = 6e-06
Identities = 50/229 (21%), Positives = 79/229 (34%), Gaps = 42/229 (18%)
Query: 311 LRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKC 370
LR+LE L L R + A + L +L + D N + IP + L
Sbjct: 87 LRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD----NRLTTIP--NGAFVYL----- 135
Query: 371 RVMRVSIRCPQLEHLSLKRSNM-----AQAVLNCPLLHLLDIASCHKLSDAAIRLAA-TS 424
+L+ L L R+N + A P L LD+ +LS I A
Sbjct: 136 ---------SKLKELWL-RNNPIESIPSYAFNRIPSLRRLDLGELKRLS--YISEGAFEG 183
Query: 425 CPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNISLES---VRLPMLTVLQLH 481
L L+++ C+ +L L L+ S ++ L L L +
Sbjct: 184 LSNLRYLNLAMCNLREIPNLT----PLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMI 239
Query: 482 SCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLE----LPRLQNIRL 526
+ I A + L + L + N LT + + L L+ I L
Sbjct: 240 QSQ-IQVIERNAFDNLQSLVEINLAH-NNLTLLPHDLFTPLHHLERIHL 286
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 8e-06
Identities = 27/160 (16%), Positives = 59/160 (36%), Gaps = 21/160 (13%)
Query: 426 PQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNISLESVR-LPMLTVLQLHSCE 484
L + ++N + V+D L I N++ L + + + L L L++ +
Sbjct: 44 NSLTYITLANIN-VTD--LTGIE-YAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKD 99
Query: 485 GITSASMAAISHSYMLEVLELDNCNLLTSVSLE----LPRLQNIRLVHCRKFADLNLRAM 540
+TS + +S L +L++ + + L LP++ +I L + D
Sbjct: 100 -VTSDKIPNLSGLTSLTLLDISH-SAHDDSILTKINTLPKVNSIDLSYNGAITD------ 151
Query: 541 MLSSIMVSNCAALHRINITSNSLQKLS-LQKQENLTSLAL 579
+ + L +NI + + ++ L L
Sbjct: 152 -IMPL--KTLPELKSLNIQFDGVHDYRGIEDFPKLNQLYA 188
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 47.4 bits (113), Expect = 1e-05
Identities = 68/368 (18%), Positives = 121/368 (32%), Gaps = 73/368 (19%)
Query: 423 TSCPQLESLDMSNC--SCVSDESLREIALSCANLRILNSSYCPNISLES---VRLPMLTV 477
S P+L+ LD+S C + D + + S ++L L + P SL L L
Sbjct: 49 FSFPELQVLDLSRCEIQTIEDGAYQ----SLSHLSTLILTGNPIQSLALGAFSGLSSLQK 104
Query: 478 LQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLE-----LPRLQNIRLVHCR-- 530
L + S I H L+ L + + NL+ S L L L+++ L +
Sbjct: 105 LVAVET-NLASLENFPIGHLKTLKELNVAH-NLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162
Query: 531 ---------------------------------KFADLNLRAMMLS------SIMVSNCA 551
F ++ L + L ++M +
Sbjct: 163 SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQ 222
Query: 552 ALHRINITSNSLQKLSLQKQ-ENLTSLALQCQC---LQEVDLTDCESLTNSVCEVFSDGG 607
L + + L + + E AL+ C ++E L + + + ++F+
Sbjct: 223 GLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFN--- 279
Query: 608 GCPMLKSLVLDNCEGLTVVRF-CSTSLVSLSLVGCRAITALELKCPILEKVCLDGCDHIE 666
+ S L + V F + L LV C+ LK L+++
Sbjct: 280 CLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGN 339
Query: 667 SASFVP-VALQSLNLG-------ICPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLT 718
+ S V +L+ L+L C S G +L + L G +S ++ L
Sbjct: 340 AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLE 399
Query: 719 SLDASFCR 726
LD
Sbjct: 400 HLDFQHSN 407
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 2e-05
Identities = 47/310 (15%), Positives = 99/310 (31%), Gaps = 37/310 (11%)
Query: 311 LRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKC 370
L LE L G+ + D S L+ L ++E + + +I
Sbjct: 224 LAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLT------IEEFRLAYLDYYLDDIIDL 277
Query: 371 RVMRVSIRCPQLEHLSLKRSNMAQAVLNCPLLHLLDI----------ASCHKLSDAAIRL 420
++ L ++++R L L++ S +L+ + +
Sbjct: 278 FNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKG 337
Query: 421 ----AATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNISLESV--RLPM 474
+ P LE LD+S + +L+ L+ S+ I++ S L
Sbjct: 338 GNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQ 397
Query: 475 LTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLE----LPRLQNIRLVHCR 530
L L + + L L++ + L L+ +++
Sbjct: 398 LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH-THTRVAFNGIFNGLSSLEVLKMAGN- 455
Query: 531 KFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLS---LQKQENLTSLALQCQCLQEV 587
+ + L I + L ++++ L++LS +L L + L+ V
Sbjct: 456 -----SFQENFLPDIF-TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSV 509
Query: 588 DLTDCESLTN 597
+ LT+
Sbjct: 510 PDGIFDRLTS 519
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 8e-04
Identities = 55/359 (15%), Positives = 103/359 (28%), Gaps = 77/359 (21%)
Query: 311 LRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKC 370
L +L+ L L + LK LNV N +Q + + L
Sbjct: 99 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVA----HNLIQSFKL-PEYFSNL----- 148
Query: 371 RVMRVSIRCPQLEHLSLKRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLES 430
LEHL L + + + +R+ S
Sbjct: 149 ---------TNLEHLDLS---------SNKI---------QSIYCTDLRVLHQMPLLNLS 181
Query: 431 LDMSNCS--CVSDESLREIALSCANLRILNSSYCPN-ISLESVRLPMLTVLQLHSCEGIT 487
LD+S + + +EI L L + +++ + L L++H
Sbjct: 182 LDLSLNPMNFIQPGAFKEI-----RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRL---- 232
Query: 488 SASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLV---------HCRKFADLNLR 538
+ + LE + L ++++E RL + + +L
Sbjct: 233 --VLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLV 290
Query: 539 AMMLSSI-MVSNCAALHRINITSNSLQKLSLQKQENLTSLALQ------------CQCLQ 585
++ + + S + + + + K ++L L L+
Sbjct: 291 SVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLE 350
Query: 586 EVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVR--FCSTSLVSLSLVGCR 642
+DL+ L+ C SD G LK L L +T+ L L
Sbjct: 351 FLDLSRNG-LSFKGCCSQSD-FGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSN 407
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 1e-05
Identities = 27/169 (15%), Positives = 63/169 (37%), Gaps = 21/169 (12%)
Query: 305 MKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIP--INHDQL 362
+ A++ L++++ L L Q+ D LA S L+ L ++ N + I L
Sbjct: 100 VSAIAGLQSIKTLDLTSTQITD--VTPLAGLSNLQVLYLDL----NQITNISPLAGLTNL 153
Query: 363 RRLEITKCRVMRVSI--RCPQLEHLSLKRSNMA--QAVLNCPLLHLLDIASCHKLSDAAI 418
+ L I +V ++ +L L + ++ + + P L + + + + +
Sbjct: 154 QYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDVSPL 213
Query: 419 RLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNISL 467
+ L + ++N + + NL + N P+ +
Sbjct: 214 ----ANTSNLFIVTLTNQTITNQPVFYNN-----NLVVPNVVKGPSGAP 253
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 46.8 bits (112), Expect = 2e-05
Identities = 53/272 (19%), Positives = 91/272 (33%), Gaps = 47/272 (17%)
Query: 378 RCPQLEHLSLKRSNMA---QAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMS 434
LE L L S++ L LD++ + SC L+ L++S
Sbjct: 75 SLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVS 134
Query: 435 NCSCVSDESLREIALSCANLRILNSSYC------PNISLESVRLPMLTVLQLHSC--EGI 486
+ + + L +L +L+ S + S L L + G
Sbjct: 135 SNTLDFPGKV-SGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGD 193
Query: 487 TSASMAAISHSYMLEVLELDNCNLLTSVSL--ELPRLQNIRLVHCRKFADLNLRAMMLSS 544
+S LE L++ + N T + + LQ++ + L +
Sbjct: 194 VD-----VSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGN------KLSGDFSRA 242
Query: 545 IMVSNCAALHRINITSNSLQ-KLSLQKQENLTSLAL---------------QCQCLQEVD 588
I S C L +NI+SN + ++L L+L C L +D
Sbjct: 243 I--STCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLD 300
Query: 589 LTDCESLTNSVCEVFSDGGGCPMLKSLVLDNC 620
L+ +V F G C +L+SL L +
Sbjct: 301 LSGN-HFYGAVPPFF---GSCSLLESLALSSN 328
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362 | Back alignment and structure |
|---|
Score = 45.9 bits (109), Expect = 3e-05
Identities = 35/329 (10%), Positives = 86/329 (26%), Gaps = 63/329 (19%)
Query: 416 AAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNISLESVRLPML 475
+ + + SLD+S + + S E+ +S +
Sbjct: 12 NPVEEFTSIPHGVTSLDLSLNN-LYSISTVEL---IQAFANTPAS--------------V 53
Query: 476 TVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADL 535
T L L + + + ++L N + ++ L +
Sbjct: 54 TSLNLSGN-SLGFKNSDELV-----QILAAIPAN-----------VTSLNLSGN-FLSYK 95
Query: 536 NLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESL 595
+ L + + + +++ N S + + + + ++L L
Sbjct: 96 SSDE--LVKTLAAIPFTITVLDLGWNDFSSKSSSEF--KQAFSNLPASITSLNLRGN-DL 150
Query: 596 TNSVCEVFSDGGGCP--MLKSLVLDNC----EGL----TVVRFCSTSLVSLSL------- 638
+ + SL L + + S+ SL L
Sbjct: 151 GIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGL 210
Query: 639 VGCRAI-TALELKCPILEKVCLDGCDHIESASFVPVALQSLNLGICPKLSTLGIEALHMV 697
+ + + L + S + L L T+ ++ +
Sbjct: 211 KSYAELAYIFSSIPNHVVSLNLCLN-CLHGPSLENLKLL---KDSLKHLQTVYLDYDIVK 266
Query: 698 VLELKGCGVLSDAYINCPLLTSLDASFCR 726
+ + C L A+ N + +D +
Sbjct: 267 NMSKEQCKALGAAFPNIQKIILVDKNGKE 295
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362 | Back alignment and structure |
|---|
Score = 45.1 bits (107), Expect = 5e-05
Identities = 48/347 (13%), Positives = 105/347 (30%), Gaps = 71/347 (20%)
Query: 306 KAVSLLRNLEALTLGRGQLGDAFFHALADC-----SMLKSLNVNDATLGN-GVQEI---- 355
+ S+ + +L L L L + + SLN++ +LG E+
Sbjct: 16 EFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQIL 75
Query: 356 PINHDQLRRLEITKCRVMRVSIRCPQLEHLSLKRSNMAQAVLNCPL-LHLLDIASCHKLS 414
+ L ++ L + S + + + P + +LD+ S
Sbjct: 76 AAIPANVTSLNLSGN----------FLSYKSSD--ELVKTLAAIPFTITVLDLGWND-FS 122
Query: 415 DAAIR-----LAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNISLES 469
+ + + SL++ + +S E+ L + ++
Sbjct: 123 SKSSSEFKQAFSNLPA-SITSLNLRGND-LGIKSSDEL---IQILAAIPAN--------- 168
Query: 470 VRLPMLTVLQLHSCEGITSASMAAI-----SHSYMLEVLELDNCNLLTSVSLEL------ 518
+ L L + S + A + S + L+L L EL
Sbjct: 169 -----VNSLNLRGN-NLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSS 222
Query: 519 --PRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTS 576
+ ++ L +L L + S L + + + ++ +S ++ + L +
Sbjct: 223 IPNHVVSLNLCLN-CLHGPSLEN--LKLLKDSLK-HLQTVYLDYDIVKNMSKEQCKALGA 278
Query: 577 LALQCQCLQEVDLTDCE---SLTNSVCEVFSDGGGCPMLKSLVLDNC 620
Q + VD E S + + + + G L N
Sbjct: 279 AFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGK--ADVPSLLNQ 323
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372 | Back alignment and structure |
|---|
Score = 45.5 bits (108), Expect = 4e-05
Identities = 41/298 (13%), Positives = 85/298 (28%), Gaps = 61/298 (20%)
Query: 307 AVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLE 366
+ +L +L L L ++ + ++L S L +
Sbjct: 67 SAEVLSSLRQLNLAGVRMTPVKCTVV--AAVLGS-----------------GRHALDEVN 107
Query: 367 ITKCRVMRVSIRCPQLEHLSLKRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAA---- 422
+ C QL+ L+ + L L L + L A +
Sbjct: 108 LASC----------QLDPAGLRT--LLPVFLRARKLGL----QLNSLGPEACKDLRDLLL 151
Query: 423 TSCPQLESLDMSNCSCVSDESLREIA---LSCANLRILNSSYCPNISLESVRL------- 472
Q+ +L +SN ++ + + ++ L+ + + E + L
Sbjct: 152 HDQCQITTLRLSNNP-LTAAGVAVLMEGLAGNTSVTHLSLLHT-GLGDEGLELLAAQLDR 209
Query: 473 -PMLTVLQLHSCEGITSASMAAIS----HSYMLEVLELDNCNLLTSVSLELPRLQNIRLV 527
L L + G + A++ LE+L L L + L L
Sbjct: 210 NRQLQELNVAYN-GAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDL----GG 264
Query: 528 HCRKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQ 585
A + + +++ L + NS + +Q+ L L+
Sbjct: 265 AAEGGARVVVSLTEGTAVSEYWSVILSEVQRNLNSWDRARVQRHLELLLRDLEDSRGA 322
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 5e-05
Identities = 33/168 (19%), Positives = 64/168 (38%), Gaps = 20/168 (11%)
Query: 305 MKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEI-PINHDQLR 363
+ + NL+ L L Q+ D L D + L+ L+VN N ++ + I L
Sbjct: 56 LAGMQFFTNLKELHLSHNQISD--LSPLKDLTKLEELSVN----RNRLKNLNGIPSACLS 109
Query: 364 RLEITKCRVMRVS--IRCPQLEHLSLKRSNMA--QAVLNCPLLHLLDIASCHKLSDAAIR 419
RL + + I LE LS++ + + + L +LD+ + +
Sbjct: 110 RLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNTGGL- 168
Query: 420 LAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNISL 467
T ++ +D++ CV++ + L I N+ P+
Sbjct: 169 ---TRLKKVNWIDLTGQKCVNEPVKYQ-----PELYITNTVKDPDGRW 208
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 9e-05
Identities = 45/279 (16%), Positives = 88/279 (31%), Gaps = 51/279 (18%)
Query: 426 PQLESLDMSNC--SCVSDESLREIALSCANLRILNSSYCPNISLESVRLPMLTVLQLHSC 483
L +L + N S + +++ L+ L S + + L L++H
Sbjct: 78 QHLYALVLVNNKISKIHEKAFS----PLRKLQKLYISKNHLVEIPPNLPSSLVELRIHDN 133
Query: 484 EGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAMMLS 543
I S + +E+ N L + E ++L + L + L+
Sbjct: 134 R-IRKVPKGVFSGLRNMNCIEMGG-NPLENSGFEPGAFDGLKLNY------LRISEAKLT 185
Query: 544 SIMVSNCAALHRINITSNSLQKL---SLQKQENLTSLALQCQCLQEVDLTDCESLTNSVC 600
I L+ +++ N +Q + L + L L L ++ ++ L
Sbjct: 186 GIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPT--- 242
Query: 601 EVFSDGGGCPMLKSLVLDNCEGLTVVR---FCSTSLVSLSLVGCRAITALE--------- 648
L+ L LDN + L+ V L + L IT +
Sbjct: 243 -----------LRELHLDNNK-LSRVPAGLPDLKLLQVVYLHTNN-ITKVGVNDFCPVGF 289
Query: 649 -LKCPILEKVCLDG----CDHIESASFVPV-ALQSLNLG 681
+K + L ++ A+F V ++ G
Sbjct: 290 GVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFG 328
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 1e-04
Identities = 55/287 (19%), Positives = 93/287 (32%), Gaps = 66/287 (22%)
Query: 426 PQLESLDMSNC--SCVSDESLREIALSCANLRILNSSYCPNISLESVRLPM---LTVLQL 480
L +L + N S +S + L L S N L+ + M L L++
Sbjct: 76 KNLHTLILINNKISKISPGAFA----PLVKLERLYLSK--N-QLKELPEKMPKTLQELRV 128
Query: 481 HSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLE------LPRLQNIRLVHCRKFAD 534
H E IT + + + V+EL N L S +E + +L IR+
Sbjct: 129 HENE-ITKVRKSVFNGLNQMIVVELGT-NPLKSSGIENGAFQGMKKLSYIRIADT----- 181
Query: 535 LNLRAMMLSSIMVSNCAALHRINITSNSLQKL---SLQKQENLTSLALQCQCLQEVDLTD 591
+++I +L +++ N + K+ SL+ NL L L + VD
Sbjct: 182 ------NITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDN-- 233
Query: 592 CESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVR---FCSTSLVSLSL---------V 639
+ P L+ L L+N + L V + + L
Sbjct: 234 ---------GSLA---NTPHLRELHLNNNK-LVKVPGGLADHKYIQVVYLHNNNISAIGS 280
Query: 640 GCRAITALELKCPILEKVCLDG----CDHIESASFVPV-ALQSLNLG 681
K V L I+ ++F V ++ LG
Sbjct: 281 NDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLG 327
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 44.4 bits (105), Expect = 1e-04
Identities = 33/210 (15%), Positives = 59/210 (28%), Gaps = 49/210 (23%)
Query: 426 PQLESLDMSNC--SCVSDESLREIALSCANLRILNSSYCPNISLESVR------LPMLTV 477
LE L + + + A+L L L + L L
Sbjct: 99 HHLEVLQLGRNSIRQIEVGAFN----GLASLNTLELFDN---WLTVIPSGAFEYLSKLRE 151
Query: 478 LQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLE----LPRLQNIRLVHCRKFA 533
L L + I S A + L L+L L +S L L+ + L C
Sbjct: 152 LWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN--- 207
Query: 534 DLNLRAMMLSSI-MVSNCAALHRINITSNSLQKL---SLQKQENLTSLALQCQCLQEVDL 589
+ + ++ L + ++ N ++ S +L L + + ++
Sbjct: 208 --------IKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIER 259
Query: 590 TDCESLTNSVCEVFSDGGGCPMLKSLVLDN 619
F G L L L +
Sbjct: 260 -----------NAFD---GLASLVELNLAH 275
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 43.6 bits (103), Expect = 2e-04
Identities = 41/231 (17%), Positives = 69/231 (29%), Gaps = 50/231 (21%)
Query: 380 PQLEHLSLKRSN----MAQAVLNCPLLHLLDIASCH--KLSDAAIRLAATSCPQLESLDM 433
LE L L R++ A L+ L++ + A +L L +
Sbjct: 99 HHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFE----YLSKLRELWL 154
Query: 434 SNC--SCVSDESLREIALSCANLRILNSSYCPNISLESVR----LPMLTVLQLHSCEGIT 487
N + + +L L+ + S L L L L C I
Sbjct: 155 RNNPIESIPSYAFN----RVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN-IK 209
Query: 488 SASMAAISHSYMLEVLELDNCNLLTSVSLE----LPRLQNIRLVHCRKFADLNLRAMMLS 543
M ++ LE LE+ N + L L+ + +++ + +S
Sbjct: 210 D--MPNLTPLVGLEELEMSG-NHFPEIRPGSFHGLSSLKKLWVMNSQ-----------VS 255
Query: 544 SI---MVSNCAALHRINITSNSLQKLSLQKQENLTSL--------ALQCQC 583
I A+L +N+ N+L L L L C C
Sbjct: 256 LIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDC 306
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 44.5 bits (105), Expect = 1e-04
Identities = 61/464 (13%), Positives = 115/464 (24%), Gaps = 84/464 (18%)
Query: 311 LRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINH--DQLRRLEIT 368
++LE L + +L + +A L+ L+++ N +P+ L +L
Sbjct: 99 NQDLEYLDVSHNRLQNISCCPMAS---LRHLDLS----FNDFDVLPVCKEFGNLTKLT-- 149
Query: 369 KCRVMRVSIRCPQLEHLSLKRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQL 428
+ + + L L L I S
Sbjct: 150 -----FLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFH 204
Query: 429 ESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNISLESVRLPMLTVLQLHSCEGITS 488
+ S +S +L + LS L N E R P L + L E T
Sbjct: 205 PNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIE-TTW 263
Query: 489 ASMAAISHS---YMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAMMLSSI 545
+ +E L + N + + E L N +
Sbjct: 264 KCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEA 323
Query: 546 MVSNCAALHRINITSNSLQKLSL---QKQENLTSLALQCQCLQEVDLTDCESLTNSVCEV 602
+ S A ++ ++ + + + + T L + C +L
Sbjct: 324 LYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKR----- 378
Query: 603 FSDGGGCPMLKSLVLDNCEGLTVVRFCSTSLVSLSLVGCRAITALELKCPILEKVCL--D 660
L + L + V L+ + L
Sbjct: 379 --------------------LQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSH 418
Query: 661 GCDHIESASFVPVALQSLNL-----------GICPKLSTL-----GIEALHMVVLELKGC 704
D + ++ LNL + PK+ L I ++ V L+
Sbjct: 419 AYDRTCA---WAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQAL 475
Query: 705 GVLS-----------DAYINCPLLTSLDASF----CRCVASLFF 733
L+ + L + C C +
Sbjct: 476 QELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYL 519
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 3e-04
Identities = 44/294 (14%), Positives = 78/294 (26%), Gaps = 73/294 (24%)
Query: 309 SLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEIT 368
+ + L L +L + L L+++ NG+
Sbjct: 25 GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSS----NGLSFKGCCSQSDFGT--- 77
Query: 369 KCRVMRVSIRCPQLEHLSLKR---SNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSC 425
L++L L M+ L L LD + L + S
Sbjct: 78 -----------TSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSL 125
Query: 426 PQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNISLESVRLPMLTVLQLHSCEG 485
L LD+S+ + R+ + L L VL++
Sbjct: 126 RNLIYLDISHT----------------HTRVAFNGIFNG-------LSSLEVLKMAGNSF 162
Query: 486 ITSASMAAISHSYMLEVLELDNCNLLTSVSLE----LPRLQNIRLVHCRKFADLNLRAMM 541
+ + L L+L L +S L LQ + + H
Sbjct: 163 QENFLPDIFTELRNLTFLDLSQ-CQLEQLSPTAFNSLSSLQVLNMSHNN----------- 210
Query: 542 LSSIMV---SNCAALHRINITSNSLQKLSLQK----QENLTSLAL-----QCQC 583
S+ +L ++ + N + Q+ +L L L C C
Sbjct: 211 FFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTC 264
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 3e-04
Identities = 38/203 (18%), Positives = 72/203 (35%), Gaps = 23/203 (11%)
Query: 426 PQLESLDMSNC--SCVSDESLREIALSCANLRILNSSYCPNISLESV----RLPMLTVLQ 479
LE LD+S S +S + ++L LN P +L L L +L+
Sbjct: 100 GSLEHLDLSYNYLSNLSSSWFK----PLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILR 155
Query: 480 LHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLE-LPRLQNIRLVHCRKFADLNLR 538
+ + + T + LE LE+D + L S + L +QN+ + +
Sbjct: 156 VGNMDTFTKIQRKDFAGLTFLEELEIDASD-LQSYEPKSLKSIQNVSHLILH-----MKQ 209
Query: 539 AMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQC-LQEVDLTDCESLTN 597
++L I V +++ + + L + + +L + + V +TD
Sbjct: 210 HILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITD-----E 264
Query: 598 SVCEVFSDGGGCPMLKSLVLDNC 620
S+ +V L L
Sbjct: 265 SLFQVMKLLNQISGLLELEFSRN 287
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 42.7 bits (100), Expect = 4e-04
Identities = 41/281 (14%), Positives = 72/281 (25%), Gaps = 76/281 (27%)
Query: 309 SLLRNLEALTLGRGQLGDAFFHALAD--CSMLKSLNVNDATLGNGVQEIPINHDQLRRLE 366
L+ L L R L +L D + L + N + +P L L+
Sbjct: 56 CLINQFSELQLNRLNL-----SSLPDNLPPQITVLEIT----QNALISLPELPASLEYLD 106
Query: 367 ITKCRVMRVSIRCPQLEHLSLKRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCP 426
R+ + L+HL + + + +
Sbjct: 107 ACDNRLSTLPELPASLKHL--------------------------DVDNNQLTMLPELPA 140
Query: 427 QLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNISLESVRLPMLTVLQLHSCEGI 486
LE ++ N L + +L +L+ L LP E
Sbjct: 141 LLEYINADNN------QLTMLPELPTSLEVLSVRNNQ---LTF--LP----------ELP 179
Query: 487 TSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAMMLSSI- 545
S LE L++ NLL S+ R + R ++ I
Sbjct: 180 ES-----------LEALDVST-NLLESLPAVPVRNHHSEETEIF----FRCRENRITHIP 223
Query: 546 -MVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQ 585
+ + I + N L + T+
Sbjct: 224 ENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRI 264
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Length = 435 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 5e-04
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 227 LTDDLLHMVFSFLDYVDLCRAAIVCRQWRAASAHEDFWR 265
D + + S+LD LC A +VC++W ++ W+
Sbjct: 18 GLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWK 56
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 6e-04
Identities = 39/265 (14%), Positives = 85/265 (32%), Gaps = 33/265 (12%)
Query: 311 LRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEI-PINH-DQLRRLEIT 368
L + + D + + + + N+ + ++ + I + + +L +
Sbjct: 23 FAETIKDNLKKKSVTD--AVTQNELNSIDQIIANN----SDIKSVQGIQYLPNVTKLFLN 76
Query: 369 KCRVMRVSI--RCPQLEHLSLKRSNMAQ--AVLNCPLLHLLDIASCHKLSD-AAIRLAAT 423
++ + L L L + + ++ + L L + +SD +
Sbjct: 77 GNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHN-GISDINGL----V 131
Query: 424 SCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNISLESVR-LPMLTVLQLHS 482
PQLESL + N L L L+ + + L L L L
Sbjct: 132 HLPQLESLYLGNNKITDITVLS----RLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSK 187
Query: 483 CEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAMML 542
I+ A++ L+VLEL + L L V N ++
Sbjct: 188 NH-ISDLR--ALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVK-------NTDGSLV 237
Query: 543 SSIMVSNCAALHRINITSNSLQKLS 567
+ ++S+ + N+ + + +
Sbjct: 238 TPEIISDDGDYEKPNVKWHLPEFTN 262
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 41.4 bits (97), Expect = 7e-04
Identities = 36/225 (16%), Positives = 77/225 (34%), Gaps = 24/225 (10%)
Query: 376 SIRCPQLEHLSLKRSNMAQ-------AVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQL 428
I+ L+ L+++ + + VL L L + + A L + P L
Sbjct: 64 IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDL 123
Query: 429 ESLDMSNCSCVSDESLRE--IALSCANLRILNSSYCPNISL---ESVRLPMLTVLQLHSC 483
L++ N S + ++ L++L+ + +++ + P L+ L L
Sbjct: 124 NILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDN 183
Query: 484 EGITSASMAAISHSYM---LEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAM 540
+ + + L+VL L N + + S L + L+L
Sbjct: 184 PELGERGLISALCPLKFPTLQVLALRN-AGMETPSGVCSAL----AAARVQLQGLDLSHN 238
Query: 541 MLSSI----MVSNCAALHRINITSNSLQKLSLQKQENLTSLALQC 581
L + L+ +N++ L+++ L+ L L
Sbjct: 239 SLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKLSVLDLSY 283
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Length = 445 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 7e-04
Identities = 15/38 (39%), Positives = 19/38 (50%)
Query: 227 LTDDLLHMVFSFLDYVDLCRAAIVCRQWRAASAHEDFW 264
L +L V SFL+ DL +AA CR WR + W
Sbjct: 22 LPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLW 59
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 733 | |||
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 100.0 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.97 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.94 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 99.93 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 99.92 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 99.92 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 99.92 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 99.91 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 99.91 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 99.91 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 99.91 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 99.9 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 99.9 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.9 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 99.9 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.89 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 99.89 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 99.89 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 99.88 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.87 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.87 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 99.87 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 99.87 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 99.87 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 99.86 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 99.85 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 99.85 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.84 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 99.84 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 99.83 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 99.83 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.83 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 99.83 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 99.82 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 99.82 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 99.81 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 99.81 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 99.8 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 99.8 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 99.79 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 99.79 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 99.77 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 99.77 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 99.77 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 99.76 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 99.75 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 99.74 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.66 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.61 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.61 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.59 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.58 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.56 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.56 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.54 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.5 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.5 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.5 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 99.5 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.48 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.47 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 99.46 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.46 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.46 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.46 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.45 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.43 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.43 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.42 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.41 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.39 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.38 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.38 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.36 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.35 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.34 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.32 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.31 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.31 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.3 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.29 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.27 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.26 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.2 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.19 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.16 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.13 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.1 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.07 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.07 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.04 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.04 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.03 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.03 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 98.99 | |
| 1fs1_A | 53 | SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L | 98.95 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 98.93 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 98.91 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 98.9 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 98.88 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 98.88 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 98.86 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 98.82 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 98.81 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 98.79 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 98.73 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 98.71 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 98.7 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 98.66 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 98.66 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 98.65 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 98.65 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 98.64 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 98.64 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 98.62 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 98.61 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 98.61 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 98.6 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 98.59 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 98.59 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 98.57 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 98.57 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 98.56 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 98.56 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 98.55 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.54 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 98.48 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 98.44 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 98.42 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 98.4 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.39 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 98.33 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 98.3 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.29 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 98.23 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 98.2 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 98.11 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 98.1 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 98.09 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 98.07 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 98.05 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 98.05 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 98.05 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 97.96 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.96 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 97.94 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 97.88 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 97.87 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 97.87 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 97.86 | |
| 3l2o_B | 312 | F-box only protein 4; small G protein fold, UBL co | 97.83 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 97.76 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 97.73 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 97.71 | |
| 2e31_A | 297 | FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui | 97.71 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 97.59 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 97.56 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 97.3 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 97.28 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 97.24 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 97.19 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 97.15 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 97.13 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 96.8 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 96.46 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 96.28 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 95.98 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 95.96 |
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-33 Score=319.26 Aligned_cols=437 Identities=19% Similarity=0.264 Sum_probs=305.8
Q ss_pred ccccCCCHHHHHHHHhcCC-hhhHHHHHHHHHHHHHhhcCCCCeeEEeeCCCCCCHHHHHHHHhhCCCccEEEEcCCCch
Q 004729 222 EIRMDLTDDLLHMVFSFLD-YVDLCRAAIVCRQWRAASAHEDFWRCLNFENRKISVEQFEDVCQRYPNATEVNIYGAPAI 300 (733)
Q Consensus 222 ~~~~~LP~ElL~~If~~L~-~~dl~~~~lVck~W~~l~~~~~lw~~l~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~ 300 (733)
|.|..||+|+|.+||+||+ .+|+.++++|||+|+.+. ...|+.+++....... ...++.++++++.|++.++...
T Consensus 4 d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~~--~~~~~~l~~~~~~~~~--~~~~~~~~~~L~~L~L~~~~~~ 79 (594)
T 2p1m_B 4 RIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIE--RWCRRKVFIGNCYAVS--PATVIRRFPKVRSVELKGKPHF 79 (594)
T ss_dssp ------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHHH--HHHCCEEEESSTTSSC--HHHHHHHCTTCCEEEEECSCGG
T ss_pred cchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHhh--hhhceEEeeccccccC--HHHHHhhCCCceEEeccCCCch
Confidence 6788999999999999999 999999999999999984 3567788876643221 2356788999999999997644
Q ss_pred hHH--------------HHHHhhcCCCCCEEEecCccCChHHHHhcc-CCCCCcEEEEecCc-CCc-ccccccccCCCcc
Q 004729 301 HLL--------------VMKAVSLLRNLEALTLGRGQLGDAFFHALA-DCSMLKSLNVNDAT-LGN-GVQEIPINHDQLR 363 (733)
Q Consensus 301 ~~~--------------~~~~l~~l~~L~~L~Ls~~~i~~~~~~~L~-~~~~L~~L~L~~~~-l~~-~~~~~~~~~~~L~ 363 (733)
.+. .......+++|++|+|+++.+++..+..+. .+++|++|++.+|. ++. .+..+...+++|+
T Consensus 80 ~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~ 159 (594)
T 2p1m_B 80 ADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLK 159 (594)
T ss_dssp GGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCC
T ss_pred hhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCC
Confidence 322 223345899999999999999988887776 69999999999984 433 2556666899999
Q ss_pred EEEeeccccc--------hhcccCCCCcEEEEcCCc-------hHHHhhCCCCccEEEEecCCCCChHHHHHHHhcCCCC
Q 004729 364 RLEITKCRVM--------RVSIRCPQLEHLSLKRSN-------MAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQL 428 (733)
Q Consensus 364 ~L~L~~~~~~--------~i~~~~~~L~~L~L~~~~-------l~~~~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L 428 (733)
+|++.+|.+. .+...+++|+.|+++++. +..+...+++|++|++.+|..+ ..+...+..+++|
T Consensus 160 ~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~--~~l~~~~~~~~~L 237 (594)
T 2p1m_B 160 ELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPL--EKLATLLQRAPQL 237 (594)
T ss_dssp EEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCH--HHHHHHHHHCTTC
T ss_pred EEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcH--HHHHHHHhcCCcc
Confidence 9999998732 344578899999998875 3345667899999999998544 3477888899999
Q ss_pred cEEeccCCCC-CChhHHHH---HHHhccccccc-ccccCCC--CCcCCCCCCCccEEEeCCCCCCchHHHHH-hhCCCCc
Q 004729 429 ESLDMSNCSC-VSDESLRE---IALSCANLRIL-NSSYCPN--ISLESVRLPMLTVLQLHSCEGITSASMAA-ISHSYML 500 (733)
Q Consensus 429 ~~L~L~~~~~-l~~~~l~~---l~~~~~~L~~L-~L~~~~~--l~~~~~~l~~L~~L~L~~c~~l~~~~~~~-l~~~~~L 500 (733)
++|++..+.. +....+.. ....|++|+.| .+.+... +......+++|++|++++|. +++..+.. +..+++|
T Consensus 238 ~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L 316 (594)
T 2p1m_B 238 EELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKL 316 (594)
T ss_dssp SEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTC
T ss_pred eEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCC-CCHHHHHHHHhcCCCc
Confidence 9999887653 33333332 34577888887 3433221 11111257899999999977 77766554 5578999
Q ss_pred CEEEEecCCCCccc-----ccCCCCCcEEEecc--------ccCCccccccccccceeecccCcCCceeeeccCcccccc
Q 004729 501 EVLELDNCNLLTSV-----SLELPRLQNIRLVH--------CRKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLS 567 (733)
Q Consensus 501 ~~L~L~~~~~l~~~-----~~~l~~L~~L~L~~--------c~~l~~l~l~~~~L~~l~l~~c~~L~~L~l~~n~L~~l~ 567 (733)
++|++.+| +.+. ...+++|+.|++.. |..+++.++... ...|++|+.|.+..+.++.
T Consensus 317 ~~L~l~~~--~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l------~~~~~~L~~L~~~~~~l~~-- 386 (594)
T 2p1m_B 317 QRLWVLDY--IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSV------SMGCPKLESVLYFCRQMTN-- 386 (594)
T ss_dssp CEEEEEGG--GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHH------HHHCTTCCEEEEEESCCCH--
T ss_pred CEEeCcCc--cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHH------HHhchhHHHHHHhcCCcCH--
Confidence 99999987 3322 12378899999844 444544443331 2458888888777776643
Q ss_pred ccccccHHHHHhcCCCCcEEeec-----CCCCCC----hhhhhhhcCCCCCCCccEEEeecCCCCccccc-----cCCCc
Q 004729 568 LQKQENLTSLALQCQCLQEVDLT-----DCESLT----NSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRF-----CSTSL 633 (733)
Q Consensus 568 ~~~~~~L~~l~~~~~~L~~L~Ls-----~C~~lt----~~~~~~~~~~~~l~~L~~L~L~~c~~L~~~~~-----~~~sL 633 (733)
..+..+...|++|+.|+++ +|+.++ +.....+ ...+++|+.|+|++ .++.... .+++|
T Consensus 387 ----~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l--~~~~~~L~~L~L~~--~l~~~~~~~l~~~~~~L 458 (594)
T 2p1m_B 387 ----AALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAI--VEHCKDLRRLSLSG--LLTDKVFEYIGTYAKKM 458 (594)
T ss_dssp ----HHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHH--HHHCTTCCEEECCS--SCCHHHHHHHHHHCTTC
T ss_pred ----HHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHH--HhhCCCccEEeecC--cccHHHHHHHHHhchhc
Confidence 4455666678899999998 677887 3333222 24678899998866 4554432 37888
Q ss_pred cEEeccccccccc-----cccccccccEEecccccccccccc-----cccCCcEEEecCCCC
Q 004729 634 VSLSLVGCRAITA-----LELKCPILEKVCLDGCDHIESASF-----VPVALQSLNLGICPK 685 (733)
Q Consensus 634 ~~L~L~~c~~L~~-----l~~~~p~L~~L~L~~c~~L~~~~~-----~~~~L~~L~L~~c~~ 685 (733)
+.|++++|. ++. +...||+|++|+|++|+. ++.+. ...+|++|++++|+.
T Consensus 459 ~~L~L~~~~-i~~~~~~~l~~~~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 459 EMLSVAFAG-DSDLGMHHVLSGCDSLRKLEIRDCPF-GDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp CEEEEESCC-SSHHHHHHHHHHCTTCCEEEEESCSC-CHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred cEeeccCCC-CcHHHHHHHHhcCCCcCEEECcCCCC-cHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 888888865 432 224588888888888775 44322 135788888888863
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=5.1e-31 Score=304.27 Aligned_cols=454 Identities=18% Similarity=0.216 Sum_probs=310.0
Q ss_pred cCCCHHHHHHHHhcC-ChhhHHHHHHHHHHHHHhhcCCCCeeEEeeCCC-CCCHHHHHHHHhhCCCccEEEEcCCCchhH
Q 004729 225 MDLTDDLLHMVFSFL-DYVDLCRAAIVCRQWRAASAHEDFWRCLNFENR-KISVEQFEDVCQRYPNATEVNIYGAPAIHL 302 (733)
Q Consensus 225 ~~LP~ElL~~If~~L-~~~dl~~~~lVck~W~~l~~~~~lw~~l~l~~~-~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~ 302 (733)
..||+|+|.+||+|| +.+|+.++++|||+|+.+.. ..++.+.+... .. ....++.++++++.|++++++.+..
T Consensus 14 ~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~~--~~~~~l~~~~~~~~---~~~~~~~~~~~L~~L~L~~~~~~~~ 88 (592)
T 3ogk_B 14 VATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDS--ETREHVTMALCYTA---TPDRLSRRFPNLRSLKLKGKPRAAM 88 (592)
T ss_dssp CCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHHH--HHCCEEEESCGGGS---CHHHHHHHCTTCSEEEEECSCGGGG
T ss_pred CCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhhh--ccccEEEEeecccc---ChHHHHHhCCCCeEEEecCCcchhh
Confidence 479999999999999 89999999999999999853 23344544331 22 2346778899999999988664331
Q ss_pred --------------HHHHHhhcCCCCCEEEecCccCChHHHHhccC-CCC-CcEEEEecCcC-C-cccccccccCCCccE
Q 004729 303 --------------LVMKAVSLLRNLEALTLGRGQLGDAFFHALAD-CSM-LKSLNVNDATL-G-NGVQEIPINHDQLRR 364 (733)
Q Consensus 303 --------------~~~~~l~~l~~L~~L~Ls~~~i~~~~~~~L~~-~~~-L~~L~L~~~~l-~-~~~~~~~~~~~~L~~ 364 (733)
........+++|++|+|+++.+++..+..+.. +++ |++|+|++|.. . ..+..+...+++|++
T Consensus 89 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~ 168 (592)
T 3ogk_B 89 FNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKT 168 (592)
T ss_dssp GTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSE
T ss_pred cccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCE
Confidence 12223347888888888888887776666655 444 88888877651 1 122233335555666
Q ss_pred EEeeccccchhcccCCCCcEEEEcCCc---hHHHhhCCCCccEEEEecCCC--CChHHHHHHHhcCCCCcEEeccCCCCC
Q 004729 365 LEITKCRVMRVSIRCPQLEHLSLKRSN---MAQAVLNCPLLHLLDIASCHK--LSDAAIRLAATSCPQLESLDMSNCSCV 439 (733)
Q Consensus 365 L~L~~~~~~~i~~~~~~L~~L~L~~~~---l~~~~~~~~~L~~L~L~~c~~--l~~~~l~~l~~~~~~L~~L~L~~~~~l 439 (733)
|++.+|.+ .+.+ +..+...+++|++|+++++.. +....+..++..|++|+.|++.+|. +
T Consensus 169 L~L~~~~~---------------~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~ 232 (592)
T 3ogk_B 169 LLMEESSF---------------SEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE-I 232 (592)
T ss_dssp EECTTCEE---------------ECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB-G
T ss_pred EECccccc---------------cCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc-H
Confidence 65555432 1111 455677889999999987432 3467788888899999999999976 3
Q ss_pred ChhHHHHHHHhcccccccccccCCCC------CcCCCCCCCccEEEeCCCCCCchHHHHHhhCCCCcCEEEEecCCCCcc
Q 004729 440 SDESLREIALSCANLRILNSSYCPNI------SLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTS 513 (733)
Q Consensus 440 ~~~~l~~l~~~~~~L~~L~L~~~~~l------~~~~~~l~~L~~L~L~~c~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~ 513 (733)
. .+......+++|++|.+..+... ......+++|+.|.+.++. .......+..+++|++|++++|. ++.
T Consensus 233 ~--~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~--~~~l~~~~~~~~~L~~L~Ls~~~-l~~ 307 (592)
T 3ogk_B 233 L--ELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG--PNEMPILFPFAAQIRKLDLLYAL-LET 307 (592)
T ss_dssp G--GGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC--TTTGGGGGGGGGGCCEEEETTCC-CCH
T ss_pred H--HHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccc--hhHHHHHHhhcCCCcEEecCCCc-CCH
Confidence 3 35566778999999999854321 1233467899999998742 22223345578899999999987 443
Q ss_pred cc-----cCCCCCcEEEeccccCCccccccccccceeecccCcCCceeeecc-----------CccccccccccccHHHH
Q 004729 514 VS-----LELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAALHRINITS-----------NSLQKLSLQKQENLTSL 577 (733)
Q Consensus 514 ~~-----~~l~~L~~L~L~~c~~l~~l~l~~~~L~~l~l~~c~~L~~L~l~~-----------n~L~~l~~~~~~~L~~l 577 (733)
.. ..+++|+.|.+.. .+.+..+... +..|++|+.|++.+ +.++ ..++..+
T Consensus 308 ~~~~~~~~~~~~L~~L~L~~--~~~~~~l~~~------~~~~~~L~~L~L~~g~~~~~~~~~~~~~~------~~~~~~l 373 (592)
T 3ogk_B 308 EDHCTLIQKCPNLEVLETRN--VIGDRGLEVL------AQYCKQLKRLRIERGADEQGMEDEEGLVS------QRGLIAL 373 (592)
T ss_dssp HHHHHHHTTCTTCCEEEEEG--GGHHHHHHHH------HHHCTTCCEEEEECCCCSSTTSSTTCCCC------HHHHHHH
T ss_pred HHHHHHHHhCcCCCEEeccC--ccCHHHHHHH------HHhCCCCCEEEeecCccccccccccCccC------HHHHHHH
Confidence 22 3478999998873 3333333322 36789999999983 3333 3456677
Q ss_pred HhcCCCCcEEeecCCCCCChhhhhhhcCCCCCCCccEEEeec---CCCCcccc---------ccCCCccEEecccccc-c
Q 004729 578 ALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDN---CEGLTVVR---------FCSTSLVSLSLVGCRA-I 644 (733)
Q Consensus 578 ~~~~~~L~~L~Ls~C~~lt~~~~~~~~~~~~l~~L~~L~L~~---c~~L~~~~---------~~~~sL~~L~L~~c~~-L 644 (733)
...|++|+.|++ .|+.+++..+..+. ..+++|++|++.+ |..++..+ ..+++|++|+++.|.+ +
T Consensus 374 ~~~~~~L~~L~l-~~~~l~~~~~~~l~--~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l 450 (592)
T 3ogk_B 374 AQGCQELEYMAV-YVSDITNESLESIG--TYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGL 450 (592)
T ss_dssp HHHCTTCSEEEE-EESCCCHHHHHHHH--HHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGC
T ss_pred HhhCccCeEEEe-ecCCccHHHHHHHH--hhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCc
Confidence 778999999999 55889988776663 3488999999984 55677642 2588999999987764 3
Q ss_pred cc-----cccccccccEEecccccccccccc-----cccCCcEEEecCCCCcccccc-----CcccccEEEecCCCCCCc
Q 004729 645 TA-----LELKCPILEKVCLDGCDHIESASF-----VPVALQSLNLGICPKLSTLGI-----EALHMVVLELKGCGVLSD 709 (733)
Q Consensus 645 ~~-----l~~~~p~L~~L~L~~c~~L~~~~~-----~~~~L~~L~L~~c~~L~~l~~-----~~~~L~~L~l~~c~~L~~ 709 (733)
.. +...+|+|++|+|++|. +++.++ ...+|++|+|++|+ ++.-.. ...+|++|++++|+ +++
T Consensus 451 ~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~-it~ 527 (592)
T 3ogk_B 451 TDLGLSYIGQYSPNVRWMLLGYVG-ESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR-ASM 527 (592)
T ss_dssp CHHHHHHHHHSCTTCCEEEECSCC-SSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB-CCT
T ss_pred cHHHHHHHHHhCccceEeeccCCC-CCHHHHHHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc-CCH
Confidence 32 33468999999999864 554321 23579999999997 654221 23469999999988 665
Q ss_pred cCC-----CCCCccEEeccC
Q 004729 710 AYI-----NCPLLTSLDASF 724 (733)
Q Consensus 710 ~~~-----~~p~L~~L~l~~ 724 (733)
.+. .+|.|....+..
T Consensus 528 ~~~~~l~~~~p~l~~~~~~~ 547 (592)
T 3ogk_B 528 TGQDLMQMARPYWNIELIPS 547 (592)
T ss_dssp TCTTGGGGCCTTEEEEEECC
T ss_pred HHHHHHHHhCCCcEEEEecC
Confidence 543 677776665543
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.94 E-value=7.7e-27 Score=249.53 Aligned_cols=269 Identities=17% Similarity=0.315 Sum_probs=200.5
Q ss_pred ccccCCCHHHHHHHHhcCChhhHHHHHHHHHHHHHhhcCCCCeeEEeeCCCCCCHHHHHHHHhhCCCccEEEEcCCCchh
Q 004729 222 EIRMDLTDDLLHMVFSFLDYVDLCRAAIVCRQWRAASAHEDFWRCLNFENRKISVEQFEDVCQRYPNATEVNIYGAPAIH 301 (733)
Q Consensus 222 ~~~~~LP~ElL~~If~~L~~~dl~~~~lVck~W~~l~~~~~lw~~l~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~ 301 (733)
..|..||+|++.+||+||+..|+.++++|||+|+.++.++.+|+++++....+....+..+.. ++++.+++.+.. +.
T Consensus 7 ~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~--~~l~~L~l~~n~-l~ 83 (336)
T 2ast_B 7 VSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDLTGKNLHPDVTGRLLS--QGVIAFRCPRSF-MD 83 (336)
T ss_dssp CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTTSSEEECTTCBCCHHHHHHHHH--TTCSEEECTTCE-EC
T ss_pred CChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchhheeeccccccCCHHHHHhhhh--ccceEEEcCCcc-cc
Confidence 457899999999999999999999999999999999999999999999988877655544432 578888887732 22
Q ss_pred HHHHHHhhcCCCCCEEEecCccCChH-HHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEEeeccccchhcccCC
Q 004729 302 LLVMKAVSLLRNLEALTLGRGQLGDA-FFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIRCP 380 (733)
Q Consensus 302 ~~~~~~l~~l~~L~~L~Ls~~~i~~~-~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~i~~~~~ 380 (733)
... ..+..+++|++|++++|.+.+. ++..+..+++|++|++++|.+.+........+++|++|++++|..
T Consensus 84 ~~~-~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~-------- 154 (336)
T 2ast_B 84 QPL-AEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSG-------- 154 (336)
T ss_dssp SCC-CSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBS--------
T ss_pred ccc-hhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCC--------
Confidence 221 1245678899999998888865 666778888999999988877655555555567777777666521
Q ss_pred CCcEEEEcCCchHHHhhCCCCccEEEEecCCCCChHHHHHHHhcCC-CCcEEeccCCC-CCChhHHHHHHHhcccccccc
Q 004729 381 QLEHLSLKRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCP-QLESLDMSNCS-CVSDESLREIALSCANLRILN 458 (733)
Q Consensus 381 ~L~~L~L~~~~l~~~~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~-~L~~L~L~~~~-~l~~~~l~~l~~~~~~L~~L~ 458 (733)
+.+..+...+..+++|++|++++|..+++..+...+..++ +|++|++++|. .+++..+......+++|++|+
T Consensus 155 ------l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~ 228 (336)
T 2ast_B 155 ------FSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 228 (336)
T ss_dssp ------CCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEE
T ss_pred ------CCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEe
Confidence 0111244557778888888888876788777777778888 88888888885 477777777777888888888
Q ss_pred cccCCCCCc----CCCCCCCccEEEeCCCCCCchHHHHHhhCCCCcCEEEEecC
Q 004729 459 SSYCPNISL----ESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNC 508 (733)
Q Consensus 459 L~~~~~l~~----~~~~l~~L~~L~L~~c~~l~~~~~~~l~~~~~L~~L~L~~~ 508 (733)
+++|..+.. ....+++|++|++++|..+.+..+..++.+++|++|++++|
T Consensus 229 l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 229 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp CTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 887764332 22356778888888776666666666677777777777766
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.2e-24 Score=248.49 Aligned_cols=421 Identities=15% Similarity=0.106 Sum_probs=285.0
Q ss_pred CCccEEEEcCCCchhHHHHHHhhcCCCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEE
Q 004729 287 PNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLE 366 (733)
Q Consensus 287 ~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~ 366 (733)
++++.|++++.. +.......+..+++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|++|+
T Consensus 26 ~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 104 (549)
T 2z81_A 26 AAMKSLDLSFNK-ITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLN 104 (549)
T ss_dssp TTCCEEECCSSC-CCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEE
T ss_pred CCccEEECcCCc-cCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEE
Confidence 578999998843 4444445678899999999999999876667788999999999999998877777677899999999
Q ss_pred eeccccchh-----cccCCCCcEEEEcCCc-hH----HHhhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCC
Q 004729 367 ITKCRVMRV-----SIRCPQLEHLSLKRSN-MA----QAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNC 436 (733)
Q Consensus 367 L~~~~~~~i-----~~~~~~L~~L~L~~~~-l~----~~~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~ 436 (733)
+++|.+..+ ...+++|+.|+++++. +. ..+..+++|++|+++++ .+... .+..+..+++|+.|+++.+
T Consensus 105 Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~-~~~~l~~l~~L~~L~l~~n 182 (549)
T 2z81_A 105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKAL-SLRNY-QSQSLKSIRDIHHLTLHLS 182 (549)
T ss_dssp CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET-TCCEE-CTTTTTTCSEEEEEEEECS
T ss_pred CCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCC-ccccc-ChhhhhccccCceEecccC
Confidence 999987632 3568899999999876 22 34677899999999986 34432 1234566889999999987
Q ss_pred CCCChhHHHHHHHhcccccccccccCCCCCc------CCCCCCCccEEEeCCCCCCchHHHHHh----hCCCCcCEEEEe
Q 004729 437 SCVSDESLREIALSCANLRILNSSYCPNISL------ESVRLPMLTVLQLHSCEGITSASMAAI----SHSYMLEVLELD 506 (733)
Q Consensus 437 ~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~------~~~~l~~L~~L~L~~c~~l~~~~~~~l----~~~~~L~~L~L~ 506 (733)
. +.. ....+...+++|+.|+++++..... ....+++|++|++.++ .+++..+..+ ..+++|+.|+++
T Consensus 183 ~-~~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~l~~~~~~~~~L~~l~l~ 259 (549)
T 2z81_A 183 E-SAF-LLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGS-VLTDESFNELLKLLRYILELSEVEFD 259 (549)
T ss_dssp B-STT-HHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESC-EEEHHHHHHHHGGGGGCTTCCEEEEE
T ss_pred c-ccc-cchhhHhhcccccEEEccCCccccccccccchhhhhhcccceecccc-ccchhHHHHHHHHhhhhccccccccc
Confidence 6 332 2333345689999999998763322 1125789999999984 5776655544 457899999999
Q ss_pred cCCCCc--cc-------ccCCCCCcEEEecccc------------------CCccccccccccceee---cccCcCCcee
Q 004729 507 NCNLLT--SV-------SLELPRLQNIRLVHCR------------------KFADLNLRAMMLSSIM---VSNCAALHRI 556 (733)
Q Consensus 507 ~~~~l~--~~-------~~~l~~L~~L~L~~c~------------------~l~~l~l~~~~L~~l~---l~~c~~L~~L 556 (733)
+|.... .+ ...+++|+.|.+.++. +++.+.+..+.+..+. +..+++|+.|
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L 339 (549)
T 2z81_A 260 DCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFL 339 (549)
T ss_dssp SCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEE
T ss_pred cccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEE
Confidence 875311 11 1235677777765542 2333333333333331 1357777788
Q ss_pred eeccCccccccccccccHHHHHhcCCCCcEEeecCCCCCChhhh--hhhcCCCCCCCccEEEeecCCCCccccc---cCC
Q 004729 557 NITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVC--EVFSDGGGCPMLKSLVLDNCEGLTVVRF---CST 631 (733)
Q Consensus 557 ~l~~n~L~~l~~~~~~~L~~l~~~~~~L~~L~Ls~C~~lt~~~~--~~~~~~~~l~~L~~L~L~~c~~L~~~~~---~~~ 631 (733)
++++|.+....+... .....+++|+.|++++| .++.... ..+ ..+++|++|++++| .++.++. .++
T Consensus 340 ~Ls~N~l~~~~~~~~----~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~---~~l~~L~~L~Ls~N-~l~~lp~~~~~~~ 410 (549)
T 2z81_A 340 DLSENLMVEEYLKNS----ACKGAWPSLQTLVLSQN-HLRSMQKTGEIL---LTLKNLTSLDISRN-TFHPMPDSCQWPE 410 (549)
T ss_dssp ECCSSCCCHHHHHHH----TCTTSSTTCCEEECTTS-CCCCHHHHHHHG---GGCTTCCEEECTTC-CCCCCCSCCCCCT
T ss_pred EccCCccccccccch----hhhhccccCcEEEccCC-cccccccchhhh---hcCCCCCEEECCCC-CCccCChhhcccc
Confidence 887777664321100 01235678888888874 5654321 223 45778888888777 4555543 456
Q ss_pred CccEEeccccccccccccc-cccccEEecccccccccccccccCCcEEEecCCCCccccccC--cccccEEEecCCCCCC
Q 004729 632 SLVSLSLVGCRAITALELK-CPILEKVCLDGCDHIESASFVPVALQSLNLGICPKLSTLGIE--ALHMVVLELKGCGVLS 708 (733)
Q Consensus 632 sL~~L~L~~c~~L~~l~~~-~p~L~~L~L~~c~~L~~~~~~~~~L~~L~L~~c~~L~~l~~~--~~~L~~L~l~~c~~L~ 708 (733)
+|+.|++++|. ++.++.. .++|++|++++| .+++.....++|++|+++++ +++.+|.. ...|+.|++++|.. +
T Consensus 411 ~L~~L~Ls~N~-l~~l~~~~~~~L~~L~Ls~N-~l~~~~~~l~~L~~L~Ls~N-~l~~ip~~~~l~~L~~L~Ls~N~l-~ 486 (549)
T 2z81_A 411 KMRFLNLSSTG-IRVVKTCIPQTLEVLDVSNN-NLDSFSLFLPRLQELYISRN-KLKTLPDASLFPVLLVMKISRNQL-K 486 (549)
T ss_dssp TCCEEECTTSC-CSCCCTTSCTTCSEEECCSS-CCSCCCCCCTTCCEEECCSS-CCSSCCCGGGCTTCCEEECCSSCC-C
T ss_pred cccEEECCCCC-cccccchhcCCceEEECCCC-ChhhhcccCChhcEEECCCC-ccCcCCCcccCccCCEEecCCCcc-C
Confidence 78888888753 5555432 257888888884 45554334557888888888 47777643 23688888888754 3
Q ss_pred ccC----CCCCCccEEeccCcc
Q 004729 709 DAY----INCPLLTSLDASFCR 726 (733)
Q Consensus 709 ~~~----~~~p~L~~L~l~~C~ 726 (733)
.+. .++++|+.|++++++
T Consensus 487 ~~~~~~~~~l~~L~~L~l~~N~ 508 (549)
T 2z81_A 487 SVPDGIFDRLTSLQKIWLHTNP 508 (549)
T ss_dssp CCCTTGGGGCTTCCEEECCSSC
T ss_pred CcCHHHHhcCcccCEEEecCCC
Confidence 322 378888999987765
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.8e-24 Score=250.27 Aligned_cols=417 Identities=17% Similarity=0.131 Sum_probs=200.4
Q ss_pred hhCCCccEEEEcCCCchhHHHHHHhhcCCCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCcc
Q 004729 284 QRYPNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLR 363 (733)
Q Consensus 284 ~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~ 363 (733)
..+++|+.|+++++ .+....+..+..+++|++|+|++|.+....+..+..+++|++|++++|.+....+.....+++|+
T Consensus 54 ~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~ 132 (606)
T 3t6q_A 54 SRLINLTFLDLTRC-QIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLE 132 (606)
T ss_dssp TTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCC
T ss_pred ccCccceEEECCCC-ccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCccc
Confidence 34556666666653 23333334455666666666666666554455556666666666666665543333445566666
Q ss_pred EEEeeccccchhc----ccCCCCcEEEEcCCchH----HHhhCCCCcc--EEEEecCCCCChHHHHHHHhcCCCCcEEec
Q 004729 364 RLEITKCRVMRVS----IRCPQLEHLSLKRSNMA----QAVLNCPLLH--LLDIASCHKLSDAAIRLAATSCPQLESLDM 433 (733)
Q Consensus 364 ~L~L~~~~~~~i~----~~~~~L~~L~L~~~~l~----~~~~~~~~L~--~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L 433 (733)
+|++++|.+..+. ..+++|+.|++++|.+. ..+..+++|+ +|+++++ .+..... ..+ ....|+.|++
T Consensus 133 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n-~l~~~~~-~~~-~~~~L~~L~l 209 (606)
T 3t6q_A 133 SLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGN-DIAGIEP-GAF-DSAVFQSLNF 209 (606)
T ss_dssp EEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTC-CCCEECT-TTT-TTCEEEEEEC
T ss_pred EEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCC-ccCccCh-hHh-hhcccccccc
Confidence 6666666554321 23566666666665443 2355566666 5555553 2222110 000 1123334443
Q ss_pred cCCCCCChhHHHHHHHhc-------------------------------ccccccccccCCCC--CcC-CCCCCCccEEE
Q 004729 434 SNCSCVSDESLREIALSC-------------------------------ANLRILNSSYCPNI--SLE-SVRLPMLTVLQ 479 (733)
Q Consensus 434 ~~~~~l~~~~l~~l~~~~-------------------------------~~L~~L~L~~~~~l--~~~-~~~l~~L~~L~ 479 (733)
.++.. +......+ .+|+.|+++++... ... ...+++|++|+
T Consensus 210 ~~~~~-----~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 284 (606)
T 3t6q_A 210 GGTQN-----LLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELD 284 (606)
T ss_dssp TTCSC-----HHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEE
T ss_pred CCchh-----HHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEe
Confidence 33320 00000010 03444444443311 111 22345555555
Q ss_pred eCCCCCCchHHHHHhhCCCCcCEEEEecCCCCccccc---CCCCCcEEEecccc--------------CCcccccccccc
Q 004729 480 LHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSL---ELPRLQNIRLVHCR--------------KFADLNLRAMML 542 (733)
Q Consensus 480 L~~c~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~---~l~~L~~L~L~~c~--------------~l~~l~l~~~~L 542 (733)
++++ .++.. ...+..+++|++|++++|......+. .+++|+.|.+.++. +++.+.+..+.+
T Consensus 285 l~~n-~l~~l-p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l 362 (606)
T 3t6q_A 285 LTAT-HLSEL-PSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDI 362 (606)
T ss_dssp CTTS-CCSCC-CSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCC
T ss_pred ccCC-ccCCC-ChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCcc
Confidence 5553 23311 12234455555555555532221111 24455555544332 111222222222
Q ss_pred cee-----ecccCcCCceeeeccCccccccccccccHHHHHhcCCCCcEEeecCCCCCChhhhhhhcCCCCCCCccEEEe
Q 004729 543 SSI-----MVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVL 617 (733)
Q Consensus 543 ~~l-----~l~~c~~L~~L~l~~n~L~~l~~~~~~~L~~l~~~~~~L~~L~Ls~C~~lt~~~~~~~~~~~~l~~L~~L~L 617 (733)
..+ .+..+++|+.|++.+|.+..+.... +..+++|+.|++++| .++...... ....+++|+.|++
T Consensus 363 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-------~~~l~~L~~L~l~~n-~l~~~~~~~--~~~~l~~L~~L~l 432 (606)
T 3t6q_A 363 ETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEA-------FKECPQLELLDLAFT-RLKVKDAQS--PFQNLHLLKVLNL 432 (606)
T ss_dssp CEEEESTTTTTTCTTCCEEECCSCSCEEECTTT-------TTTCTTCSEEECTTC-CEECCTTCC--TTTTCTTCCEEEC
T ss_pred ccccCcchhcccCCCCCEEECCCCcCCcCCHHH-------hcCCccCCeEECCCC-cCCCcccch--hhhCcccCCEEEC
Confidence 222 2456666777777766665442211 224567777777764 443322111 1245677777777
Q ss_pred ecCCCCcccc----ccCCCccEEeccccccccc-------cccccccccEEecccccccccc---cc-cccCCcEEEecC
Q 004729 618 DNCEGLTVVR----FCSTSLVSLSLVGCRAITA-------LELKCPILEKVCLDGCDHIESA---SF-VPVALQSLNLGI 682 (733)
Q Consensus 618 ~~c~~L~~~~----~~~~sL~~L~L~~c~~L~~-------l~~~~p~L~~L~L~~c~~L~~~---~~-~~~~L~~L~L~~ 682 (733)
++|. ++... ..+++|++|+++++. +.. ....+++|++|++++|. ++.. .+ ...+|++|++++
T Consensus 433 ~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~ 509 (606)
T 3t6q_A 433 SHSL-LDISSEQLFDGLPALQHLNLQGNH-FPKGNIQKTNSLQTLGRLEILVLSFCD-LSSIDQHAFTSLKMMNHVDLSH 509 (606)
T ss_dssp TTCC-CBTTCTTTTTTCTTCCEEECTTCB-CGGGEECSSCGGGGCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCS
T ss_pred CCCc-cCCcCHHHHhCCCCCCEEECCCCC-CCccccccchhhccCCCccEEECCCCc-cCccChhhhccccCCCEEECCC
Confidence 7663 33321 146677777777753 222 12256777777777753 3322 11 134677777777
Q ss_pred CCCccccccCcc----cccEEEecCCCCCCccC---CCCCCccEEeccCcc
Q 004729 683 CPKLSTLGIEAL----HMVVLELKGCGVLSDAY---INCPLLTSLDASFCR 726 (733)
Q Consensus 683 c~~L~~l~~~~~----~L~~L~l~~c~~L~~~~---~~~p~L~~L~l~~C~ 726 (733)
+. ++.++.... .| .|++++|..-.... ..+++|+.|++++++
T Consensus 510 N~-l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 558 (606)
T 3t6q_A 510 NR-LTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNP 558 (606)
T ss_dssp SC-CCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCC
T ss_pred Cc-cCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCC
Confidence 63 555443222 35 67777764432111 156777777777654
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=5.4e-25 Score=261.42 Aligned_cols=368 Identities=18% Similarity=0.194 Sum_probs=191.3
Q ss_pred HhhCCCccEEEEcCCCchhHHHHHH-hhcCCCCCEEEecCccCChHHHHh---ccCCCCCcEEEEecCcCCccccccccc
Q 004729 283 CQRYPNATEVNIYGAPAIHLLVMKA-VSLLRNLEALTLGRGQLGDAFFHA---LADCSMLKSLNVNDATLGNGVQEIPIN 358 (733)
Q Consensus 283 ~~~~~~L~~L~L~~~~~~~~~~~~~-l~~l~~L~~L~Ls~~~i~~~~~~~---L~~~~~L~~L~L~~~~l~~~~~~~~~~ 358 (733)
+..+++|+.|+++++. +....+.. +..+++|++|+|++|.+....+.. +..+++|++|++++|.+....+. ..
T Consensus 122 l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~ 198 (768)
T 3rgz_A 122 LGSCSGLKFLNVSSNT-LDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV--SR 198 (768)
T ss_dssp GGGCTTCCEEECCSSE-EECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC--TT
T ss_pred HhCCCCCCEEECcCCc-cCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCc--cc
Confidence 3456667777776632 22111111 245667777777777666544443 56677777777777665543332 45
Q ss_pred CCCccEEEeeccccchh---cccCCCCcEEEEcCCchH----HHhhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEE
Q 004729 359 HDQLRRLEITKCRVMRV---SIRCPQLEHLSLKRSNMA----QAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESL 431 (733)
Q Consensus 359 ~~~L~~L~L~~~~~~~i---~~~~~~L~~L~L~~~~l~----~~~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L 431 (733)
+++|++|++++|.+... ...+++|++|++++|.+. ..+..+++|++|++++|. +... ++. ..+++|++|
T Consensus 199 l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~-l~~~-~~~--~~l~~L~~L 274 (768)
T 3rgz_A 199 CVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQ-FVGP-IPP--LPLKSLQYL 274 (768)
T ss_dssp CTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSC-CEES-CCC--CCCTTCCEE
T ss_pred CCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCc-ccCc-cCc--cccCCCCEE
Confidence 67777777777665432 245667777777766543 345566777777777653 2211 000 145666677
Q ss_pred eccCCCCCChhHHHHHHHhcccccccccccCC---CCCcCCCCCCCccEEEeCCCCCCc-hHHHHHhhCCCCcCEEEEec
Q 004729 432 DMSNCSCVSDESLREIALSCANLRILNSSYCP---NISLESVRLPMLTVLQLHSCEGIT-SASMAAISHSYMLEVLELDN 507 (733)
Q Consensus 432 ~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~---~l~~~~~~l~~L~~L~L~~c~~l~-~~~~~~l~~~~~L~~L~L~~ 507 (733)
+++++. ++......+...+++|++|+++++. .++.....+++|++|++.++. +. ......+..+++|++|++++
T Consensus 275 ~L~~n~-l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~ip~~~l~~l~~L~~L~Ls~ 352 (768)
T 3rgz_A 275 SLAENK-FTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNN-FSGELPMDTLLKMRGLKVLDLSF 352 (768)
T ss_dssp ECCSSE-EEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSE-EEEECCHHHHTTCTTCCEEECCS
T ss_pred ECcCCc-cCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCc-ccCcCCHHHHhcCCCCCEEeCcC
Confidence 666654 2221111222234667777776665 223333456677777777643 33 33333466667777777776
Q ss_pred CCCCcccccC---CC-CCcEEEeccc---------------cCCcccccccccccee---ecccCcCCceeeeccCcccc
Q 004729 508 CNLLTSVSLE---LP-RLQNIRLVHC---------------RKFADLNLRAMMLSSI---MVSNCAALHRINITSNSLQK 565 (733)
Q Consensus 508 ~~~l~~~~~~---l~-~L~~L~L~~c---------------~~l~~l~l~~~~L~~l---~l~~c~~L~~L~l~~n~L~~ 565 (733)
|.....+|.. ++ +|+.|++.++ +.++.+.+..+.+... .+.++++|+.|++.+|.++.
T Consensus 353 n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 432 (768)
T 3rgz_A 353 NEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSG 432 (768)
T ss_dssp SEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEES
T ss_pred CccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccC
Confidence 6433233332 22 5666655442 2233333333333322 34556666666666666554
Q ss_pred ccccccccH-----------------HHHHhcCCCCcEEeecCCCCCChhhhhhhcCCCCCCCccEEEeecCCCCccccc
Q 004729 566 LSLQKQENL-----------------TSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRF 628 (733)
Q Consensus 566 l~~~~~~~L-----------------~~l~~~~~~L~~L~Ls~C~~lt~~~~~~~~~~~~l~~L~~L~L~~c~~L~~~~~ 628 (733)
..+.....+ ......+++|+.|++++| .++...+..+ +.+++|+.|+|++|.-...++.
T Consensus 433 ~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~~p~~l---~~l~~L~~L~L~~N~l~~~~p~ 508 (768)
T 3rgz_A 433 TIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFN-DLTGEIPSGL---SNCTNLNWISLSNNRLTGEIPK 508 (768)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSS-CCCSCCCGGG---GGCTTCCEEECCSSCCCSCCCG
T ss_pred cccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCC-cccCcCCHHH---hcCCCCCEEEccCCccCCcCCh
Confidence 322111110 011123456666666653 4443333333 3466666666666642223322
Q ss_pred ---cCCCccEEeccccccccccc---cccccccEEeccccc
Q 004729 629 ---CSTSLVSLSLVGCRAITALE---LKCPILEKVCLDGCD 663 (733)
Q Consensus 629 ---~~~sL~~L~L~~c~~L~~l~---~~~p~L~~L~L~~c~ 663 (733)
.+++|+.|++++|.--..++ ..+++|+.|++++|+
T Consensus 509 ~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 549 (768)
T 3rgz_A 509 WIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL 549 (768)
T ss_dssp GGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSE
T ss_pred HHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCc
Confidence 45667777777654322333 256777777777653
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=3.8e-24 Score=254.12 Aligned_cols=414 Identities=19% Similarity=0.159 Sum_probs=279.5
Q ss_pred hhCCCccEEEEcCCCchhHHHHHHhhcCCCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCcc
Q 004729 284 QRYPNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLR 363 (733)
Q Consensus 284 ~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~ 363 (733)
..+++|+.|+++++. +....+. ++.+++|++|++++|.+....+..+..+++|++|++++|.+...++.. .+++|+
T Consensus 197 ~~l~~L~~L~Ls~n~-l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~ 272 (768)
T 3rgz_A 197 SRCVNLEFLDVSSNN-FSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQ 272 (768)
T ss_dssp TTCTTCCEEECCSSC-CCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCC
T ss_pred ccCCcCCEEECcCCc-CCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCC
Confidence 456788999988754 2222222 778899999999999998888889999999999999999877655544 789999
Q ss_pred EEEeeccccc-hhc----ccCCCCcEEEEcCCchH----HHhhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEecc
Q 004729 364 RLEITKCRVM-RVS----IRCPQLEHLSLKRSNMA----QAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMS 434 (733)
Q Consensus 364 ~L~L~~~~~~-~i~----~~~~~L~~L~L~~~~l~----~~~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~ 434 (733)
+|++.+|.+. .++ ..+++|+.|++++|.+. ..+..+++|++|++++|. +........+..+++|+.|+++
T Consensus 273 ~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~ip~~~l~~l~~L~~L~Ls 351 (768)
T 3rgz_A 273 YLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNN-FSGELPMDTLLKMRGLKVLDLS 351 (768)
T ss_dssp EEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSE-EEEECCHHHHTTCTTCCEEECC
T ss_pred EEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCc-ccCcCCHHHHhcCCCCCEEeCc
Confidence 9999999875 333 23589999999998654 457789999999999863 3311112336678999999999
Q ss_pred CCCCCChhHHHHHHHhcc-cccccccccCCC---CCcCCCC--CCCccEEEeCCCCCCchHHHHHhhCCCCcCEEEEecC
Q 004729 435 NCSCVSDESLREIALSCA-NLRILNSSYCPN---ISLESVR--LPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNC 508 (733)
Q Consensus 435 ~~~~l~~~~l~~l~~~~~-~L~~L~L~~~~~---l~~~~~~--l~~L~~L~L~~c~~l~~~~~~~l~~~~~L~~L~L~~~ 508 (733)
++. ++......+. .++ +|+.|+++++.. +...... +++|++|++.+| .++......+..+++|++|++++|
T Consensus 352 ~n~-l~~~~p~~l~-~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~p~~l~~l~~L~~L~Ls~N 428 (768)
T 3rgz_A 352 FNE-FSGELPESLT-NLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNN-GFTGKIPPTLSNCSELVSLHLSFN 428 (768)
T ss_dssp SSE-EEECCCTTHH-HHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSS-EEEEECCGGGGGCTTCCEEECCSS
T ss_pred CCc-cCccccHHHH-hhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCC-ccccccCHHHhcCCCCCEEECcCC
Confidence 986 4322222232 444 899999998762 2222223 778999999985 455555566788899999999988
Q ss_pred CCCccccc---CCCCCcEEEeccccCCccccccccccceeecccCcCCceeeeccCccccccccccccHHHHHhcCCCCc
Q 004729 509 NLLTSVSL---ELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQ 585 (733)
Q Consensus 509 ~~l~~~~~---~l~~L~~L~L~~c~~l~~l~l~~~~L~~l~l~~c~~L~~L~l~~n~L~~l~~~~~~~L~~l~~~~~~L~ 585 (733)
......|. .+++|+.|.+.++.-...+. -.+..+++|+.|++.+|.+....+. ....+++|+
T Consensus 429 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p--------~~~~~l~~L~~L~L~~N~l~~~~p~-------~l~~l~~L~ 493 (768)
T 3rgz_A 429 YLSGTIPSSLGSLSKLRDLKLWLNMLEGEIP--------QELMYVKTLETLILDFNDLTGEIPS-------GLSNCTNLN 493 (768)
T ss_dssp EEESCCCGGGGGCTTCCEEECCSSCCCSCCC--------GGGGGCTTCCEEECCSSCCCSCCCG-------GGGGCTTCC
T ss_pred cccCcccHHHhcCCCCCEEECCCCcccCcCC--------HHHcCCCCceEEEecCCcccCcCCH-------HHhcCCCCC
Confidence 54334443 36788888887764211111 0256677888888888877654321 123567888
Q ss_pred EEeecCCCCCChhhhhhhcCCCCCCCccEEEeecCCCCccccc---cCCCccEEeccccccccccc--------------
Q 004729 586 EVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRF---CSTSLVSLSLVGCRAITALE-------------- 648 (733)
Q Consensus 586 ~L~Ls~C~~lt~~~~~~~~~~~~l~~L~~L~L~~c~~L~~~~~---~~~sL~~L~L~~c~~L~~l~-------------- 648 (733)
.|++++| .++...+..+ +.+++|+.|+|++|.-...++. .+++|+.|++++|+-...++
T Consensus 494 ~L~L~~N-~l~~~~p~~~---~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~ 569 (768)
T 3rgz_A 494 WISLSNN-RLTGEIPKWI---GRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANF 569 (768)
T ss_dssp EEECCSS-CCCSCCCGGG---GGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCST
T ss_pred EEEccCC-ccCCcCChHH---hcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhc
Confidence 8888874 5655444444 4577788888877743333332 56777788777653211111
Q ss_pred -----------------------------------------------------------cccccccEEeccccccccc-c
Q 004729 649 -----------------------------------------------------------LKCPILEKVCLDGCDHIES-A 668 (733)
Q Consensus 649 -----------------------------------------------------------~~~p~L~~L~L~~c~~L~~-~ 668 (733)
..+++|+.|+++++ .++. +
T Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N-~l~g~i 648 (768)
T 3rgz_A 570 IAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYN-MLSGYI 648 (768)
T ss_dssp TCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSS-CCBSCC
T ss_pred cccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCC-cccccC
Confidence 12577888888884 3432 1
Q ss_pred --cc-cccCCcEEEecCCCCcc-ccccC---cccccEEEecCCCCC---CccCCCCCCccEEeccCcc
Q 004729 669 --SF-VPVALQSLNLGICPKLS-TLGIE---ALHMVVLELKGCGVL---SDAYINCPLLTSLDASFCR 726 (733)
Q Consensus 669 --~~-~~~~L~~L~L~~c~~L~-~l~~~---~~~L~~L~l~~c~~L---~~~~~~~p~L~~L~l~~C~ 726 (733)
.+ ...+|+.|+++++. ++ .+|.. ...|+.|++++|..- +....++++|+.|++++++
T Consensus 649 p~~l~~l~~L~~L~Ls~N~-l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~ 715 (768)
T 3rgz_A 649 PKEIGSMPYLFILNLGHND-ISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNN 715 (768)
T ss_dssp CGGGGGCTTCCEEECCSSC-CCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSE
T ss_pred CHHHhccccCCEEeCcCCc-cCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCc
Confidence 11 23478899998885 55 45532 236889999987753 3334478899999998875
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=2.2e-23 Score=241.12 Aligned_cols=418 Identities=16% Similarity=0.145 Sum_probs=203.8
Q ss_pred CCccEEEEcCCCchhHHHHHHhhcCCCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEE
Q 004729 287 PNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLE 366 (733)
Q Consensus 287 ~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~ 366 (733)
++++.|++++ ..+.......+..+++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|++|+
T Consensus 32 ~~l~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 110 (606)
T 3vq2_A 32 SSTKNIDLSF-NPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV 110 (606)
T ss_dssp TTCCEEECTT-SCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEE
T ss_pred CCcCEEECCC-CCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEE
Confidence 3455566555 223333333445556666666666655544444555556666666666555544444455556666666
Q ss_pred eeccccchhc----ccCCCCcEEEEcCCchH-----HHhhCCCCccEEEEecCCCCChHH---HHHHH------------
Q 004729 367 ITKCRVMRVS----IRCPQLEHLSLKRSNMA-----QAVLNCPLLHLLDIASCHKLSDAA---IRLAA------------ 422 (733)
Q Consensus 367 L~~~~~~~i~----~~~~~L~~L~L~~~~l~-----~~~~~~~~L~~L~L~~c~~l~~~~---l~~l~------------ 422 (733)
+++|.+..+. ..+++|++|++++|.+. ..+..+++|++|+++++ .+.... +..+.
T Consensus 111 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~~l~~L~l~ 189 (606)
T 3vq2_A 111 AVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN-YIQTITVNDLQFLRENPQVNLSLDMS 189 (606)
T ss_dssp CTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSS-CCCEECTTTTHHHHHCTTCCCEEECT
T ss_pred ccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCC-cceecChhhhhhhhccccccceeecc
Confidence 6665544322 34555666666555432 23455556666666553 222210 11110
Q ss_pred -----------hcCCCCcEEeccCCCCCChhHHHHHHHhcccccccccccC-----------------------------
Q 004729 423 -----------TSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYC----------------------------- 462 (733)
Q Consensus 423 -----------~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~----------------------------- 462 (733)
....+|+.|+++++. ++...+......+++|+.+.+...
T Consensus 190 ~n~l~~~~~~~~~~~~L~~L~L~~n~-~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l 268 (606)
T 3vq2_A 190 LNPIDFIQDQAFQGIKLHELTLRGNF-NSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRL 268 (606)
T ss_dssp TCCCCEECTTTTTTCEEEEEEEESCC-SCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEE
T ss_pred CCCcceeCcccccCceeeeeeccCCc-cchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheec
Confidence 011256666666665 444445555556666555444211
Q ss_pred ---CCCC---cCCCCCCCccEEEeCCCCCCchHHHHHhhCCCCcCEEEEecCCCCccccc-CCCCCcEEEeccccCC---
Q 004729 463 ---PNIS---LESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSL-ELPRLQNIRLVHCRKF--- 532 (733)
Q Consensus 463 ---~~l~---~~~~~l~~L~~L~L~~c~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~-~l~~L~~L~L~~c~~l--- 532 (733)
..+. .....+++|+.|++.++. +.... .+..+++|++|++++|.. ..+|. .+++|+.|.+.++..+
T Consensus 269 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~l~--~l~~~~~L~~L~l~~n~l-~~lp~~~l~~L~~L~l~~n~~~~~~ 344 (606)
T 3vq2_A 269 TYTNDFSDDIVKFHCLANVSAMSLAGVS-IKYLE--DVPKHFKWQSLSIIRCQL-KQFPTLDLPFLKSLTLTMNKGSISF 344 (606)
T ss_dssp CCCTTCCGGGGSCGGGTTCSEEEEESCC-CCCCC--CCCTTCCCSEEEEESCCC-SSCCCCCCSSCCEEEEESCSSCEEC
T ss_pred cccccccccccccccCCCCCEEEecCcc-chhhh--hccccccCCEEEcccccC-cccccCCCCccceeeccCCcCccch
Confidence 1000 012245677777777643 33322 455667777777777754 44442 4567777777665322
Q ss_pred --------cccccccccccee-----ecccCcCCceeeeccCccccccccccccHHHHHhcCCCCcEEeecCCCCCChhh
Q 004729 533 --------ADLNLRAMMLSSI-----MVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSV 599 (733)
Q Consensus 533 --------~~l~l~~~~L~~l-----~l~~c~~L~~L~l~~n~L~~l~~~~~~~L~~l~~~~~~L~~L~Ls~C~~lt~~~ 599 (733)
+.+.+..+.+..+ .+..+++|+.|++.+|.+..+. . ....+++|+.|++++| .++...
T Consensus 345 ~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~----~----~~~~l~~L~~L~l~~n-~l~~~~ 415 (606)
T 3vq2_A 345 KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMS----A----NFMGLEELQHLDFQHS-TLKRVT 415 (606)
T ss_dssp CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEEC----C----CCTTCTTCCEEECTTS-EEESTT
T ss_pred hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccch----h----hccCCCCCCeeECCCC-ccCCcc
Confidence 2222222222211 1334455555555555544332 0 1123456666666653 333221
Q ss_pred hhhhcCCCCCCCccEEEeecCCCCcccc---ccCCCccEEeccccccccc--c---ccccccccEEeccccccccccc--
Q 004729 600 CEVFSDGGGCPMLKSLVLDNCEGLTVVR---FCSTSLVSLSLVGCRAITA--L---ELKCPILEKVCLDGCDHIESAS-- 669 (733)
Q Consensus 600 ~~~~~~~~~l~~L~~L~L~~c~~L~~~~---~~~~sL~~L~L~~c~~L~~--l---~~~~p~L~~L~L~~c~~L~~~~-- 669 (733)
. ......+++|+.|++++|......+ ..+++|+.|++++|. +.. + ...+++|++|++++| .++...
T Consensus 416 ~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~ 491 (606)
T 3vq2_A 416 E--FSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNS-FKDNTLSNVFANTTNLTFLDLSKC-QLEQISWG 491 (606)
T ss_dssp T--TTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCE-EGGGEECSCCTTCTTCCEEECTTS-CCCEECTT
T ss_pred C--hhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCc-CCCcchHHhhccCCCCCEEECCCC-cCCccChh
Confidence 1 0112455666666666653222121 145666666666643 222 1 124566666666664 232211
Q ss_pred -c-cccCCcEEEecCCCCccccccC----cccccEEEecCCCCCCccCC---CCC-CccEEeccCcc
Q 004729 670 -F-VPVALQSLNLGICPKLSTLGIE----ALHMVVLELKGCGVLSDAYI---NCP-LLTSLDASFCR 726 (733)
Q Consensus 670 -~-~~~~L~~L~L~~c~~L~~l~~~----~~~L~~L~l~~c~~L~~~~~---~~p-~L~~L~l~~C~ 726 (733)
+ ...+|++|++++|. ++.+... ...|+.|++++|+ ++.+.. .+| +|+.|++++++
T Consensus 492 ~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~l~~N~-l~~~p~~~~~l~~~L~~l~l~~N~ 556 (606)
T 3vq2_A 492 VFDTLHRLQLLNMSHNN-LLFLDSSHYNQLYSLSTLDCSFNR-IETSKGILQHFPKSLAFFNLTNNS 556 (606)
T ss_dssp TTTTCTTCCEEECCSSC-CSCEEGGGTTTCTTCCEEECTTSC-CCCEESCGGGSCTTCCEEECCSCC
T ss_pred hhcccccCCEEECCCCc-CCCcCHHHccCCCcCCEEECCCCc-CcccCHhHhhhcccCcEEEccCCC
Confidence 1 13466666666663 5544221 1246667776665 333222 454 47777766543
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=2e-23 Score=241.39 Aligned_cols=417 Identities=17% Similarity=0.141 Sum_probs=260.4
Q ss_pred CCccEEEEcCCCchhHHHHHHhhcCCCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEE
Q 004729 287 PNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLE 366 (733)
Q Consensus 287 ~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~ 366 (733)
+.++.|++++ ..+.......+..+++|++|+|++|.+....+..+..+++|++|++++|.+....+..+..+++|++|+
T Consensus 33 ~~l~~L~Ls~-n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 111 (606)
T 3t6q_A 33 NSTECLEFSF-NVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLF 111 (606)
T ss_dssp TTCCEEECTT-CCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEE
T ss_pred CcCcEEEccC-CccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEee
Confidence 3689999998 445555556778999999999999999877778888999999999999988877677778899999999
Q ss_pred eeccccchh----cccCCCCcEEEEcCCchHHH----hhCCCCccEEEEecCCCCChHHHHHHHhcCCCCc--EEeccCC
Q 004729 367 ITKCRVMRV----SIRCPQLEHLSLKRSNMAQA----VLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLE--SLDMSNC 436 (733)
Q Consensus 367 L~~~~~~~i----~~~~~~L~~L~L~~~~l~~~----~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~--~L~L~~~ 436 (733)
+++|.+..+ ...+++|++|++++|.+..+ +..+++|++|+++++ .+.... ...+..+++|+ .|+++++
T Consensus 112 L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~-~~~~~~l~~L~~l~L~l~~n 189 (606)
T 3t6q_A 112 FIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNN-AIHYLS-KEDMSSLQQATNLSLNLNGN 189 (606)
T ss_dssp CTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSS-CCCEEC-HHHHHTTTTCCSEEEECTTC
T ss_pred ccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccC-cccccC-hhhhhhhcccceeEEecCCC
Confidence 999987754 25688999999999876542 334889999999985 455432 23456788898 8888887
Q ss_pred CCCChhHHHHHHHhcccccccccccCCCCCcC----------------------------C---CCCCCccEEEeCCCCC
Q 004729 437 SCVSDESLREIALSCANLRILNSSYCPNISLE----------------------------S---VRLPMLTVLQLHSCEG 485 (733)
Q Consensus 437 ~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~----------------------------~---~~l~~L~~L~L~~c~~ 485 (733)
. ++......+ ...+|+.|++.++..+... . ..-.+|++|++.++ .
T Consensus 190 ~-l~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n-~ 265 (606)
T 3t6q_A 190 D-IAGIEPGAF--DSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKH-Y 265 (606)
T ss_dssp C-CCEECTTTT--TTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTC-C
T ss_pred c-cCccChhHh--hhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecC-c
Confidence 6 443222211 3467888888876421100 0 00127889999984 5
Q ss_pred CchHHHHHhhCCCCcCEEEEecCCCCcccccC---CCCCcEEEecccc-------------CCccccccccccc-e---e
Q 004729 486 ITSASMAAISHSYMLEVLELDNCNLLTSVSLE---LPRLQNIRLVHCR-------------KFADLNLRAMMLS-S---I 545 (733)
Q Consensus 486 l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~---l~~L~~L~L~~c~-------------~l~~l~l~~~~L~-~---l 545 (733)
++......++.+++|++|++++|. ++.+|.. +++|+.|.+.++. +++.+.+..+.+. . -
T Consensus 266 l~~~~~~~~~~l~~L~~L~l~~n~-l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~ 344 (606)
T 3t6q_A 266 FFNISSNTFHCFSGLQELDLTATH-LSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTG 344 (606)
T ss_dssp CSSCCTTTTTTCTTCSEEECTTSC-CSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSS
T ss_pred cCccCHHHhccccCCCEEeccCCc-cCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchh
Confidence 666666668889999999999984 5666653 5788999887653 1222222222111 0 1
Q ss_pred ecccCcCCceeeeccCccccccccccccHHHHHhcCCCCcEEeecCCCCCChhhhhhhcCCCCCCCccEEEeecCCCCcc
Q 004729 546 MVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTV 625 (733)
Q Consensus 546 ~l~~c~~L~~L~l~~n~L~~l~~~~~~~L~~l~~~~~~L~~L~Ls~C~~lt~~~~~~~~~~~~l~~L~~L~L~~c~~L~~ 625 (733)
.+..+++|+.|++++|.+..+... ......+++|+.|++++| .++......+ ..+++|+.|+++++. ++.
T Consensus 345 ~~~~l~~L~~L~l~~n~l~~~~~~-----~~~~~~l~~L~~L~l~~n-~l~~~~~~~~---~~l~~L~~L~l~~n~-l~~ 414 (606)
T 3t6q_A 345 CLENLENLRELDLSHDDIETSDCC-----NLQLRNLSHLQSLNLSYN-EPLSLKTEAF---KECPQLELLDLAFTR-LKV 414 (606)
T ss_dssp TTTTCTTCCEEECCSSCCCEEEES-----TTTTTTCTTCCEEECCSC-SCEEECTTTT---TTCTTCSEEECTTCC-EEC
T ss_pred hhhccCcCCEEECCCCccccccCc-----chhcccCCCCCEEECCCC-cCCcCCHHHh---cCCccCCeEECCCCc-CCC
Confidence 234455566666666555543210 011224556666666663 4443322222 456666666666653 222
Q ss_pred c-c----ccCCCccEEecccccccccc----ccccccccEEecccccccccc------cc-cccCCcEEEecCCCCcccc
Q 004729 626 V-R----FCSTSLVSLSLVGCRAITAL----ELKCPILEKVCLDGCDHIESA------SF-VPVALQSLNLGICPKLSTL 689 (733)
Q Consensus 626 ~-~----~~~~sL~~L~L~~c~~L~~l----~~~~p~L~~L~L~~c~~L~~~------~~-~~~~L~~L~L~~c~~L~~l 689 (733)
. + ..+++|+.|++++|. +... ...+++|++|+++++. +++. .+ ...+|++|++++|. ++.+
T Consensus 415 ~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~ 491 (606)
T 3t6q_A 415 KDAQSPFQNLHLLKVLNLSHSL-LDISSEQLFDGLPALQHLNLQGNH-FPKGNIQKTNSLQTLGRLEILVLSFCD-LSSI 491 (606)
T ss_dssp CTTCCTTTTCTTCCEEECTTCC-CBTTCTTTTTTCTTCCEEECTTCB-CGGGEECSSCGGGGCTTCCEEECTTSC-CCEE
T ss_pred cccchhhhCcccCCEEECCCCc-cCCcCHHHHhCCCCCCEEECCCCC-CCccccccchhhccCCCccEEECCCCc-cCcc
Confidence 2 1 145666666666643 2222 1246677777777643 2221 11 13467777777663 5555
Q ss_pred ccCc----ccccEEEecCCCCCCc---cCCCCCCccEEeccCc
Q 004729 690 GIEA----LHMVVLELKGCGVLSD---AYINCPLLTSLDASFC 725 (733)
Q Consensus 690 ~~~~----~~L~~L~l~~c~~L~~---~~~~~p~L~~L~l~~C 725 (733)
+... ..|++|++++|..-.. ...++++| .|++++|
T Consensus 492 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N 533 (606)
T 3t6q_A 492 DQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASN 533 (606)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSS
T ss_pred ChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCC
Confidence 3222 2477777777643221 12256666 6766665
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=3.7e-23 Score=242.60 Aligned_cols=424 Identities=17% Similarity=0.132 Sum_probs=211.0
Q ss_pred HhhCCCccEEEEcCCCchhHHHHHHhhcCCCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCc
Q 004729 283 CQRYPNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQL 362 (733)
Q Consensus 283 ~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L 362 (733)
+...++|+.|+++++ .+.......++.+++|++|++++|.+....+..+..+++|++|++++|.+....+.....+++|
T Consensus 69 ~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 147 (680)
T 1ziw_A 69 CQKLPMLKVLNLQHN-ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENL 147 (680)
T ss_dssp HHHCTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTC
T ss_pred HhcccCcCEEECCCC-ccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccC
Confidence 445677777777763 3333333346667777777777777664444556677777777777777665555555667777
Q ss_pred cEEEeeccccchhc------ccCCCCcEEEEcCCchHH----HhhCCCCccEEEEecCCCCChHHHHHHHh--cCCC---
Q 004729 363 RRLEITKCRVMRVS------IRCPQLEHLSLKRSNMAQ----AVLNCPLLHLLDIASCHKLSDAAIRLAAT--SCPQ--- 427 (733)
Q Consensus 363 ~~L~L~~~~~~~i~------~~~~~L~~L~L~~~~l~~----~~~~~~~L~~L~L~~c~~l~~~~l~~l~~--~~~~--- 427 (733)
++|++++|.+..+. ..+++|+.|+++++.+.. .+..+++|+.|.+.++ .+.......+.. ..++
T Consensus 148 ~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~-~l~~~~~~~~~~~l~~~~L~~ 226 (680)
T 1ziw_A 148 QELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNV-QLGPSLTEKLCLELANTSIRN 226 (680)
T ss_dssp CEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTC-CCHHHHHHHHHHHHTTSCCCE
T ss_pred CEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhcccc-ccChhhHHHHHHHhhhccccE
Confidence 77777777654332 134677777777665432 2334555555555443 222222111110 1234
Q ss_pred -----------------------CcEEeccCCCCCChhHHHHHHHhcccccccccccCCCC---CcCCCCCCCccEEEeC
Q 004729 428 -----------------------LESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNI---SLESVRLPMLTVLQLH 481 (733)
Q Consensus 428 -----------------------L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~~l---~~~~~~l~~L~~L~L~ 481 (733)
|+.|+++++. ++.... ..+..+++|++|+++++... +.....+++|++|++.
T Consensus 227 L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~-l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 304 (680)
T 1ziw_A 227 LSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNN-LNVVGN-DSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLK 304 (680)
T ss_dssp EECTTSCCCEECTTTTGGGGGSCCCEEECTTSC-CCEECT-TTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECT
T ss_pred EEccCCcccccChhHhhccCcCCCCEEECCCCC-cCccCc-ccccCcccccEeeCCCCccCccChhhhcCCCCccEEecc
Confidence 4444444443 221111 11123445555555444311 1122244555555554
Q ss_pred CCCCCchH--------HHHHhhCCCCcCEEEEecCCCCccccc----CCCCCcEEEecccc-----------------CC
Q 004729 482 SCEGITSA--------SMAAISHSYMLEVLELDNCNLLTSVSL----ELPRLQNIRLVHCR-----------------KF 532 (733)
Q Consensus 482 ~c~~l~~~--------~~~~l~~~~~L~~L~L~~~~~l~~~~~----~l~~L~~L~L~~c~-----------------~l 532 (733)
++...... ....+..+++|++|++++|.. ..++. .+++|+.|.+.++. .+
T Consensus 305 ~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L 383 (680)
T 1ziw_A 305 RSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDI-PGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPL 383 (680)
T ss_dssp TCBCCC------CCEECTTTTTTCTTCCEEECCSCCB-CCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCC
T ss_pred chhhhcccccccccccChhhcccCCCCCEEECCCCcc-CCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcC
Confidence 42111000 001234566677777766642 22221 25677777776542 33
Q ss_pred cccccccccccee---ecccCcCCceeeeccCccccccccccccHHHHHhcCCCCcEEeecCCCCCChhhhhhhcCCCCC
Q 004729 533 ADLNLRAMMLSSI---MVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGC 609 (733)
Q Consensus 533 ~~l~l~~~~L~~l---~l~~c~~L~~L~l~~n~L~~l~~~~~~~L~~l~~~~~~L~~L~Ls~C~~lt~~~~~~~~~~~~l 609 (733)
+.+.+..+.+..+ .+..+++|+.|++.+|.+...... ..+..+++|+.|++++| .++......| ..+
T Consensus 384 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~------~~~~~l~~L~~L~Ls~n-~l~~~~~~~~---~~~ 453 (680)
T 1ziw_A 384 HILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTG------QEWRGLENIFEIYLSYN-KYLQLTRNSF---ALV 453 (680)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCS------GGGTTCTTCCEEECCSC-SEEECCTTTT---TTC
T ss_pred ceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCc------ccccCcccccEEecCCC-CcceeChhhh---hcC
Confidence 3444444444443 345667777777777776532110 11224566777777664 3333222222 345
Q ss_pred CCccEEEeecCCC--Ccccc---ccCCCccEEeccccccccccc----cccccccEEeccccccccccc-----------
Q 004729 610 PMLKSLVLDNCEG--LTVVR---FCSTSLVSLSLVGCRAITALE----LKCPILEKVCLDGCDHIESAS----------- 669 (733)
Q Consensus 610 ~~L~~L~L~~c~~--L~~~~---~~~~sL~~L~L~~c~~L~~l~----~~~p~L~~L~L~~c~~L~~~~----------- 669 (733)
++|+.|++.++.- +...+ ..+++|+.|+++++ .++.++ ..+++|++|+++++ .++...
T Consensus 454 ~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~~ 531 (680)
T 1ziw_A 454 PSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNN-NIANINDDMLEGLEKLEILDLQHN-NLARLWKHANPGGPIYF 531 (680)
T ss_dssp TTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCGGGGSTTSTTSCCCT
T ss_pred cccccchhccccccccccCCcccccCCCCCEEECCCC-CCCcCChhhhccccccCEEeCCCC-CccccchhhccCCcchh
Confidence 5666666655421 11111 14556666666663 344332 24566666666663 233210
Q ss_pred c-cccCCcEEEecCCCCccccccCc----ccccEEEecCCCCCCccC----CCCCCccEEeccCc
Q 004729 670 F-VPVALQSLNLGICPKLSTLGIEA----LHMVVLELKGCGVLSDAY----INCPLLTSLDASFC 725 (733)
Q Consensus 670 ~-~~~~L~~L~L~~c~~L~~l~~~~----~~L~~L~l~~c~~L~~~~----~~~p~L~~L~l~~C 725 (733)
+ ...+|++|+++++ +++.++... ..|+.|+++++. ++.+. .++++|+.|+++++
T Consensus 532 ~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~~l~~L~~L~L~~N 594 (680)
T 1ziw_A 532 LKGLSHLHILNLESN-GFDEIPVEVFKDLFELKIIDLGLNN-LNTLPASVFNNQVSLKSLNLQKN 594 (680)
T ss_dssp TTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECTTS
T ss_pred hcCCCCCCEEECCCC-CCCCCCHHHcccccCcceeECCCCC-CCcCCHhHhCCCCCCCEEECCCC
Confidence 0 1235666666655 355555322 246666665543 22222 24566666666655
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=5.4e-23 Score=241.17 Aligned_cols=241 Identities=17% Similarity=0.188 Sum_probs=152.8
Q ss_pred HhhCCCccEEEEcCCCchhHHHHHHhhcCCCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCc
Q 004729 283 CQRYPNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQL 362 (733)
Q Consensus 283 ~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L 362 (733)
+..+++++.|++++. .+....+..+..+++|++|+|++|.+.......+..+++|++|++++|.+....+..+..+++|
T Consensus 45 ~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 123 (680)
T 1ziw_A 45 FTRYSQLTSLDVGFN-TISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNL 123 (680)
T ss_dssp GGGGTTCSEEECCSS-CCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTC
T ss_pred HhCCCcCcEEECCCC-ccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCC
Confidence 445677788887763 3444444556677888888888777764444456777888888888877765554556677788
Q ss_pred cEEEeeccccchhc----ccCCCCcEEEEcCCchHHH----h--hCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEe
Q 004729 363 RRLEITKCRVMRVS----IRCPQLEHLSLKRSNMAQA----V--LNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLD 432 (733)
Q Consensus 363 ~~L~L~~~~~~~i~----~~~~~L~~L~L~~~~l~~~----~--~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~ 432 (733)
++|++++|.+.... ..+++|+.|++++|.+... + ..+++|++|+++++ .+.... +..+..+++|+.|+
T Consensus 124 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~-~~~~~~l~~L~~L~ 201 (680)
T 1ziw_A 124 ITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSN-QIKEFS-PGCFHAIGRLFGLF 201 (680)
T ss_dssp CEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTC-CCCCBC-TTGGGGSSEECEEE
T ss_pred CEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCC-cccccC-hhhhhhhhhhhhhh
Confidence 88888877665332 3577788888877654321 1 24577888888775 333221 22345667788888
Q ss_pred ccCCCCCChhHHHHHHH--hcccccccccccCCCCCc---CCCCC--CCccEEEeCCCCCCchHHHHHhhCCCCcCEEEE
Q 004729 433 MSNCSCVSDESLREIAL--SCANLRILNSSYCPNISL---ESVRL--PMLTVLQLHSCEGITSASMAAISHSYMLEVLEL 505 (733)
Q Consensus 433 L~~~~~l~~~~l~~l~~--~~~~L~~L~L~~~~~l~~---~~~~l--~~L~~L~L~~c~~l~~~~~~~l~~~~~L~~L~L 505 (733)
+.++. +.......+.. ..++|+.|+++++..... ....+ ++|++|+++++ .+.......++.+++|++|++
T Consensus 202 l~~~~-l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L 279 (680)
T 1ziw_A 202 LNNVQ-LGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYN-NLNVVGNDSFAWLPQLEYFFL 279 (680)
T ss_dssp CTTCC-CHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTS-CCCEECTTTTTTCTTCCEEEC
T ss_pred ccccc-cChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCC-CcCccCcccccCcccccEeeC
Confidence 87765 44444433322 346888888887753221 11223 45899999884 465555556778888999999
Q ss_pred ecCCCCccccc---CCCCCcEEEecc
Q 004729 506 DNCNLLTSVSL---ELPRLQNIRLVH 528 (733)
Q Consensus 506 ~~~~~l~~~~~---~l~~L~~L~L~~ 528 (733)
++|......+. .+++|+.|.+.+
T Consensus 280 ~~n~l~~~~~~~~~~l~~L~~L~L~~ 305 (680)
T 1ziw_A 280 EYNNIQHLFSHSLHGLFNVRYLNLKR 305 (680)
T ss_dssp CSCCBSEECTTTTTTCTTCCEEECTT
T ss_pred CCCccCccChhhhcCCCCccEEeccc
Confidence 88854333222 356777777754
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=7.5e-23 Score=236.62 Aligned_cols=402 Identities=15% Similarity=0.132 Sum_probs=240.1
Q ss_pred hCCCccEEEEcCCCchhHHHHHHhhcCCCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCc-ccccccccCCCcc
Q 004729 285 RYPNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGN-GVQEIPINHDQLR 363 (733)
Q Consensus 285 ~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~-~~~~~~~~~~~L~ 363 (733)
..++|+.|+++++ .+....+..++.+++|++|++++|.+....+..++++++|++|++++|.+.. .++.....+++|+
T Consensus 78 ~l~~L~~L~Ls~n-~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~ 156 (606)
T 3vq2_A 78 GLHHLSNLILTGN-PIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLV 156 (606)
T ss_dssp TCTTCCEEECTTC-CCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCC
T ss_pred chhhcCEeECCCC-cccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCC
Confidence 3444555555442 2222223334445555555555554443322334455555555555554443 2344444555555
Q ss_pred EEEeeccccchhcc----cCCC----CcEEEEcCCchHHH---hhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEe
Q 004729 364 RLEITKCRVMRVSI----RCPQ----LEHLSLKRSNMAQA---VLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLD 432 (733)
Q Consensus 364 ~L~L~~~~~~~i~~----~~~~----L~~L~L~~~~l~~~---~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~ 432 (733)
+|++++|.+..+.. .+.+ +..|+++++.+..+ .....+|++|+++++ .+....++..+..++.|+.++
T Consensus 157 ~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n-~~~~~~~~~~~~~l~~L~~l~ 235 (606)
T 3vq2_A 157 HVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGN-FNSSNIMKTCLQNLAGLHVHR 235 (606)
T ss_dssp EEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESC-CSCHHHHHHHHHTTTTCEEEE
T ss_pred EEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCC-ccchhHHHHHhcccccccccc
Confidence 55555554433221 1111 22455554443321 112237889999885 466556666677777777666
Q ss_pred cc--------------------------------CCCCCChhHHHHHHHhcccccccccccCCCCCc-CCCCCCCccEEE
Q 004729 433 MS--------------------------------NCSCVSDESLREIALSCANLRILNSSYCPNISL-ESVRLPMLTVLQ 479 (733)
Q Consensus 433 L~--------------------------------~~~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~-~~~~l~~L~~L~ 479 (733)
+. ....+...... ...+++|+.|++.++..... ....+++|++|+
T Consensus 236 l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~ 313 (606)
T 3vq2_A 236 LILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK--FHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLS 313 (606)
T ss_dssp EEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS--CGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEE
T ss_pred ccccccccCCcccccChHHhhhhhhccHhheeccccccccccccc--cccCCCCCEEEecCccchhhhhccccccCCEEE
Confidence 52 22223222222 34667888888877663222 233567788888
Q ss_pred eCCCCCCchHHHHHhhCCCCcCEEEEecCCCCccccc-CCCCCcEEEeccc---------------cCCccccccccccc
Q 004729 480 LHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSL-ELPRLQNIRLVHC---------------RKFADLNLRAMMLS 543 (733)
Q Consensus 480 L~~c~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~-~l~~L~~L~L~~c---------------~~l~~l~l~~~~L~ 543 (733)
+.+|. +.... .+ .+++|++|++++|..+...+. .+++|+.|++.++ ++++.+.+..+.+.
T Consensus 314 l~~n~-l~~lp--~~-~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~ 389 (606)
T 3vq2_A 314 IIRCQ-LKQFP--TL-DLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI 389 (606)
T ss_dssp EESCC-CSSCC--CC-CCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE
T ss_pred ccccc-Ccccc--cC-CCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccc
Confidence 88754 33322 33 677788888877755554433 3567777776543 33444444444444
Q ss_pred ee--ecccCcCCceeeeccCccccccccccccHHHHHhcCCCCcEEeecCCCCCChhhhhhhcCCCCCCCccEEEeecCC
Q 004729 544 SI--MVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCE 621 (733)
Q Consensus 544 ~l--~l~~c~~L~~L~l~~n~L~~l~~~~~~~L~~l~~~~~~L~~L~Ls~C~~lt~~~~~~~~~~~~l~~L~~L~L~~c~ 621 (733)
.+ .+..+++|+.|++.+|.+..+... .....+++|+.|++++| .++......+ +.+++|++|++++|.
T Consensus 390 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~------~~~~~l~~L~~L~l~~n-~l~~~~~~~~---~~l~~L~~L~l~~n~ 459 (606)
T 3vq2_A 390 IMSANFMGLEELQHLDFQHSTLKRVTEF------SAFLSLEKLLYLDISYT-NTKIDFDGIF---LGLTSLNTLKMAGNS 459 (606)
T ss_dssp EECCCCTTCTTCCEEECTTSEEESTTTT------TTTTTCTTCCEEECTTS-CCEECCTTTT---TTCTTCCEEECTTCE
T ss_pred cchhhccCCCCCCeeECCCCccCCccCh------hhhhccccCCEEECcCC-CCCccchhhh---cCCCCCCEEECCCCc
Confidence 43 467889999999999998766321 11236789999999995 6665443333 678999999999984
Q ss_pred CCcc--cc---ccCCCccEEeccccccccccc----cccccccEEecccccccccc---ccc-ccCCcEEEecCCCCccc
Q 004729 622 GLTV--VR---FCSTSLVSLSLVGCRAITALE----LKCPILEKVCLDGCDHIESA---SFV-PVALQSLNLGICPKLST 688 (733)
Q Consensus 622 ~L~~--~~---~~~~sL~~L~L~~c~~L~~l~----~~~p~L~~L~L~~c~~L~~~---~~~-~~~L~~L~L~~c~~L~~ 688 (733)
++. ++ ..+++|+.|++++| .++.+. ..+++|++|+++++ .++.. .+. ..+|++|++++|. ++.
T Consensus 460 -l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~l~~N~-l~~ 535 (606)
T 3vq2_A 460 -FKDNTLSNVFANTTNLTFLDLSKC-QLEQISWGVFDTLHRLQLLNMSHN-NLLFLDSSHYNQLYSLSTLDCSFNR-IET 535 (606)
T ss_dssp -EGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCSCEEGGGTTTCTTCCEEECTTSC-CCC
T ss_pred -CCCcchHHhhccCCCCCEEECCCC-cCCccChhhhcccccCCEEECCCC-cCCCcCHHHccCCCcCCEEECCCCc-Ccc
Confidence 443 22 26799999999997 454443 36899999999996 44442 222 4589999999995 888
Q ss_pred cccC--c-c-cccEEEecCCCCCC
Q 004729 689 LGIE--A-L-HMVVLELKGCGVLS 708 (733)
Q Consensus 689 l~~~--~-~-~L~~L~l~~c~~L~ 708 (733)
+|.. . + +|+.|++++++..-
T Consensus 536 ~p~~~~~l~~~L~~l~l~~N~~~c 559 (606)
T 3vq2_A 536 SKGILQHFPKSLAFFNLTNNSVAC 559 (606)
T ss_dssp EESCGGGSCTTCCEEECCSCCCCC
T ss_pred cCHhHhhhcccCcEEEccCCCccc
Confidence 8854 2 2 49999999987653
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=8.1e-23 Score=233.40 Aligned_cols=398 Identities=15% Similarity=0.166 Sum_probs=265.6
Q ss_pred CCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEEeeccccchhc----ccCCCCcEEEE
Q 004729 312 RNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVS----IRCPQLEHLSL 387 (733)
Q Consensus 312 ~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~i~----~~~~~L~~L~L 387 (733)
++|++|+|++|.++...+..+..+++|++|++++|.+....+..+..+++|++|++++|.+..++ ..+++|++|++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 105 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence 68999999999988766677889999999999999888766666778899999999999876443 46788888888
Q ss_pred cCCchHH-----HhhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCCCCCChhHHHHHHHhcccccccccccC
Q 004729 388 KRSNMAQ-----AVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYC 462 (733)
Q Consensus 388 ~~~~l~~-----~~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~ 462 (733)
++|.+.. .+..+++|++|+++++..+.... ...+..+++|++|+++++. ++...... ...+++|++|++.++
T Consensus 106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~~~~-l~~l~~L~~L~l~~n 182 (549)
T 2z81_A 106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIR-RIDFAGLTSLNELEIKALS-LRNYQSQS-LKSIRDIHHLTLHLS 182 (549)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEEC-TTTTTTCCEEEEEEEEETT-CCEECTTT-TTTCSEEEEEEEECS
T ss_pred CCCcccccchhhhhhccCCccEEECCCCccccccC-HhhhhcccccCeeeccCCc-ccccChhh-hhccccCceEecccC
Confidence 8876652 35678888888888864343321 1234567788888888766 44322222 225677777777765
Q ss_pred CCCCcCC---CCCCCccEEEeCCCCCCchHH---HHHhhCCCCcCEEEEecCCCCccc-------ccCCCCCcEEEeccc
Q 004729 463 PNISLES---VRLPMLTVLQLHSCEGITSAS---MAAISHSYMLEVLELDNCNLLTSV-------SLELPRLQNIRLVHC 529 (733)
Q Consensus 463 ~~l~~~~---~~l~~L~~L~L~~c~~l~~~~---~~~l~~~~~L~~L~L~~~~~l~~~-------~~~l~~L~~L~L~~c 529 (733)
....... ..+++|++|+++++ .+.... ......+++|+.|++.++...... ...+++|+.+.+.+|
T Consensus 183 ~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~ 261 (549)
T 2z81_A 183 ESAFLLEIFADILSSVRYLELRDT-NLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDC 261 (549)
T ss_dssp BSTTHHHHHHHSTTTBSEEEEESC-BCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESC
T ss_pred cccccchhhHhhcccccEEEccCC-ccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccc
Confidence 4221111 14677778877774 333221 011223567777777776321111 123567777777665
Q ss_pred cCCcccccc--------c-cccceeec------------------ccCcCCceeeeccCccccccccccccHHHHHhcCC
Q 004729 530 RKFADLNLR--------A-MMLSSIMV------------------SNCAALHRINITSNSLQKLSLQKQENLTSLALQCQ 582 (733)
Q Consensus 530 ~~l~~l~l~--------~-~~L~~l~l------------------~~c~~L~~L~l~~n~L~~l~~~~~~~L~~l~~~~~ 582 (733)
.--....+. . ..++.+.+ ...++|+.|++.+|.+..+. ..+...++
T Consensus 262 ~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip-------~~~~~~l~ 334 (549)
T 2z81_A 262 TLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVP-------CSFSQHLK 334 (549)
T ss_dssp EEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCC-------HHHHHHCT
T ss_pred cccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCC-------HHHHhcCc
Confidence 311100000 0 01111111 12356777888777766442 12334689
Q ss_pred CCcEEeecCCCCCChhhhhhhcCCCCCCCccEEEeecCCCCcccc------ccCCCccEEecccccccccccc---cccc
Q 004729 583 CLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVR------FCSTSLVSLSLVGCRAITALEL---KCPI 653 (733)
Q Consensus 583 ~L~~L~Ls~C~~lt~~~~~~~~~~~~l~~L~~L~L~~c~~L~~~~------~~~~sL~~L~L~~c~~L~~l~~---~~p~ 653 (733)
+|+.|++++| .+++..+......+.+++|+.|++++| .++.++ ..+++|+.|++++| .++.++. .+++
T Consensus 335 ~L~~L~Ls~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~~~~ 411 (549)
T 2z81_A 335 SLEFLDLSEN-LMVEEYLKNSACKGAWPSLQTLVLSQN-HLRSMQKTGEILLTLKNLTSLDISRN-TFHPMPDSCQWPEK 411 (549)
T ss_dssp TCCEEECCSS-CCCHHHHHHHTCTTSSTTCCEEECTTS-CCCCHHHHHHHGGGCTTCCEEECTTC-CCCCCCSCCCCCTT
T ss_pred cccEEEccCC-ccccccccchhhhhccccCcEEEccCC-cccccccchhhhhcCCCCCEEECCCC-CCccCChhhccccc
Confidence 9999999994 787765443333478999999999998 465442 37899999999996 5776653 5789
Q ss_pred ccEEecccccccccc-cccccCCcEEEecCCCCccccccCcccccEEEecCCCCCCccCC--CCCCccEEeccCcc
Q 004729 654 LEKVCLDGCDHIESA-SFVPVALQSLNLGICPKLSTLGIEALHMVVLELKGCGVLSDAYI--NCPLLTSLDASFCR 726 (733)
Q Consensus 654 L~~L~L~~c~~L~~~-~~~~~~L~~L~L~~c~~L~~l~~~~~~L~~L~l~~c~~L~~~~~--~~p~L~~L~l~~C~ 726 (733)
|++|+++++. ++.+ +..+.+|++|++++| +++.++.....|++|++++|. ++.+.. .+++|+.|++++|.
T Consensus 412 L~~L~Ls~N~-l~~l~~~~~~~L~~L~Ls~N-~l~~~~~~l~~L~~L~Ls~N~-l~~ip~~~~l~~L~~L~Ls~N~ 484 (549)
T 2z81_A 412 MRFLNLSSTG-IRVVKTCIPQTLEVLDVSNN-NLDSFSLFLPRLQELYISRNK-LKTLPDASLFPVLLVMKISRNQ 484 (549)
T ss_dssp CCEEECTTSC-CSCCCTTSCTTCSEEECCSS-CCSCCCCCCTTCCEEECCSSC-CSSCCCGGGCTTCCEEECCSSC
T ss_pred ccEEECCCCC-cccccchhcCCceEEECCCC-ChhhhcccCChhcEEECCCCc-cCcCCCcccCccCCEEecCCCc
Confidence 9999999954 5543 334569999999999 588877666789999999985 443332 68999999998873
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.90 E-value=5.6e-23 Score=236.91 Aligned_cols=251 Identities=20% Similarity=0.208 Sum_probs=118.0
Q ss_pred cCCCCcEEEEcCC---chHHHhhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCCCCCChhHHHHHHHhcccc
Q 004729 378 RCPQLEHLSLKRS---NMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANL 454 (733)
Q Consensus 378 ~~~~L~~L~L~~~---~l~~~~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L 454 (733)
.+++|+.|.+.+. .+..++..+++|++|++++|. +.+..+..++..+++|+.|++.+ .+.+..+..+...|++|
T Consensus 268 ~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~--~~~~~~l~~~~~~~~~L 344 (592)
T 3ogk_B 268 FPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETRN--VIGDRGLEVLAQYCKQL 344 (592)
T ss_dssp CCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEEG--GGHHHHHHHHHHHCTTC
T ss_pred ccccccccCccccchhHHHHHHhhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEeccC--ccCHHHHHHHHHhCCCC
Confidence 3444555554432 223334455566666666554 55555545555566666666652 24455555555555556
Q ss_pred ccccccc----------CCCCCcCC-----CCCCCccEEEeCCCCCCchHHHHHhhC-CCCcCEEEEecCCCCcccccCC
Q 004729 455 RILNSSY----------CPNISLES-----VRLPMLTVLQLHSCEGITSASMAAISH-SYMLEVLELDNCNLLTSVSLEL 518 (733)
Q Consensus 455 ~~L~L~~----------~~~l~~~~-----~~l~~L~~L~L~~c~~l~~~~~~~l~~-~~~L~~L~L~~~~~l~~~~~~l 518 (733)
++|++.+ |..+.... ..+++|++|++ +|+.+++..+..++. +++|++|++.++.
T Consensus 345 ~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l-~~~~l~~~~~~~l~~~~~~L~~L~l~~~~--------- 414 (592)
T 3ogk_B 345 KRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAV-YVSDITNESLESIGTYLKNLCDFRLVLLD--------- 414 (592)
T ss_dssp CEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEE-EESCCCHHHHHHHHHHCCSCCEEEEEECS---------
T ss_pred CEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEe-ecCCccHHHHHHHHhhCCCCcEEEEeecC---------
Confidence 6665553 33332211 13455555555 334455555555443 5555555554211
Q ss_pred CCCcEEEeccccCCccccccccccceeecccCcCCceeeeccCccccccccccccHHHHHhcCCCCcEEeecCCCCCChh
Q 004729 519 PRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNS 598 (733)
Q Consensus 519 ~~L~~L~L~~c~~l~~l~l~~~~L~~l~l~~c~~L~~L~l~~n~L~~l~~~~~~~L~~l~~~~~~L~~L~Ls~C~~lt~~ 598 (733)
.|..+++..+.. .+.. .+..|++|+.|+++.+.- ......+..+...+++|+.|++++| .+++.
T Consensus 415 ---------~~n~l~~~p~~~-~~~~-~~~~~~~L~~L~L~~~~~----~l~~~~~~~~~~~~~~L~~L~L~~n-~l~~~ 478 (592)
T 3ogk_B 415 ---------REERITDLPLDN-GVRS-LLIGCKKLRRFAFYLRQG----GLTDLGLSYIGQYSPNVRWMLLGYV-GESDE 478 (592)
T ss_dssp ---------CCSCCSSCCCHH-HHHH-HHHHCTTCCEEEEECCGG----GCCHHHHHHHHHSCTTCCEEEECSC-CSSHH
T ss_pred ---------CCccccCchHHH-HHHH-HHHhCCCCCEEEEecCCC----CccHHHHHHHHHhCccceEeeccCC-CCCHH
Confidence 122232221000 0000 033455555555543210 0012334444455666666666653 45554
Q ss_pred hhhhhcCCCCCCCccEEEeecCCCCcccc-----ccCCCccEEeccccccccc-----cccccccccEEeccc
Q 004729 599 VCEVFSDGGGCPMLKSLVLDNCEGLTVVR-----FCSTSLVSLSLVGCRAITA-----LELKCPILEKVCLDG 661 (733)
Q Consensus 599 ~~~~~~~~~~l~~L~~L~L~~c~~L~~~~-----~~~~sL~~L~L~~c~~L~~-----l~~~~p~L~~L~L~~ 661 (733)
....+. ..+++|+.|+|++|. ++... ..+++|++|+|++|+ ++. +...+|.|....+..
T Consensus 479 ~~~~~~--~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~-it~~~~~~l~~~~p~l~~~~~~~ 547 (592)
T 3ogk_B 479 GLMEFS--RGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR-ASMTGQDLMQMARPYWNIELIPS 547 (592)
T ss_dssp HHHHHH--TCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB-CCTTCTTGGGGCCTTEEEEEECC
T ss_pred HHHHHH--hcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc-CCHHHHHHHHHhCCCcEEEEecC
Confidence 333221 445666666666665 43321 145666666666654 332 344566666555544
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=99.90 E-value=5.8e-24 Score=247.01 Aligned_cols=360 Identities=14% Similarity=0.108 Sum_probs=211.1
Q ss_pred cccccccCCCccEEEeeccccch------------------hc---c--cCCCCcEEEEcCCchH----HHhhCCCCccE
Q 004729 352 VQEIPINHDQLRRLEITKCRVMR------------------VS---I--RCPQLEHLSLKRSNMA----QAVLNCPLLHL 404 (733)
Q Consensus 352 ~~~~~~~~~~L~~L~L~~~~~~~------------------i~---~--~~~~L~~L~L~~~~l~----~~~~~~~~L~~ 404 (733)
++.....+++|++|++++|.+.. ++ . .+++|++|++++|.+. ..+..+++|++
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 277 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQL 277 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCE
T ss_pred CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCE
Confidence 45555667777777777776655 33 2 5667777777776533 34566778888
Q ss_pred EEEecCCCCChHHHHHHHhc------CCCCcEEeccCCCCCChhHHHH--HHHhcccccccccccCCCC-Cc-CCCCCCC
Q 004729 405 LDIASCHKLSDAAIRLAATS------CPQLESLDMSNCSCVSDESLRE--IALSCANLRILNSSYCPNI-SL-ESVRLPM 474 (733)
Q Consensus 405 L~L~~c~~l~~~~l~~l~~~------~~~L~~L~L~~~~~l~~~~l~~--l~~~~~~L~~L~L~~~~~l-~~-~~~~l~~ 474 (733)
|+++++..++...++..+.. +++|+.|+++++. ++ .++. .+..+++|+.|+++++... .. ....+++
T Consensus 278 L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~--~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~ 354 (636)
T 4eco_A 278 INVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN-LK--TFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIK 354 (636)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-CS--SCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEE
T ss_pred EECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc-CC--ccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCC
Confidence 88887543654233433333 3788888888776 44 2332 3446778888888776522 11 3335678
Q ss_pred ccEEEeCCCCCCchHHHHHhhCCCC-cCEEEEecCCCCcccccC-----CCCCcEEEeccccCCccccccccccceeecc
Q 004729 475 LTVLQLHSCEGITSASMAAISHSYM-LEVLELDNCNLLTSVSLE-----LPRLQNIRLVHCRKFADLNLRAMMLSSIMVS 548 (733)
Q Consensus 475 L~~L~L~~c~~l~~~~~~~l~~~~~-L~~L~L~~~~~l~~~~~~-----l~~L~~L~L~~c~~l~~l~l~~~~L~~l~l~ 548 (733)
|++|+++++ .+. .....+..+++ |++|++++|. ++.+|.. +++|+.|++.++.- +...-....-......
T Consensus 355 L~~L~L~~N-~l~-~lp~~l~~l~~~L~~L~Ls~N~-l~~lp~~~~~~~l~~L~~L~Ls~N~l-~~~~p~~l~~~~~~~~ 430 (636)
T 4eco_A 355 LASLNLAYN-QIT-EIPANFCGFTEQVENLSFAHNK-LKYIPNIFDAKSVSVMSAIDFSYNEI-GSVDGKNFDPLDPTPF 430 (636)
T ss_dssp ESEEECCSS-EEE-ECCTTSEEECTTCCEEECCSSC-CSSCCSCCCTTCSSCEEEEECCSSCT-TTTTTCSSCTTCSSCC
T ss_pred CCEEECCCC-ccc-cccHhhhhhcccCcEEEccCCc-CcccchhhhhcccCccCEEECcCCcC-CCcchhhhcccccccc
Confidence 888888874 344 22234566777 8888888875 4455543 23677777766531 1110000000000111
Q ss_pred cCcCCceeeeccCccccccccccccHHHHHhcCCCCcEEeecCCCCCChhhhhhhcC----CCCCCCccEEEeecCCCCc
Q 004729 549 NCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSD----GGGCPMLKSLVLDNCEGLT 624 (733)
Q Consensus 549 ~c~~L~~L~l~~n~L~~l~~~~~~~L~~l~~~~~~L~~L~Ls~C~~lt~~~~~~~~~----~~~l~~L~~L~L~~c~~L~ 624 (733)
.+++|+.|++++|.++.+.. .+...+++|+.|++++ +.++......+.. ...+++|+.|+|++| .++
T Consensus 431 ~~~~L~~L~Ls~N~l~~lp~-------~~~~~l~~L~~L~Ls~-N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~ 501 (636)
T 4eco_A 431 KGINVSSINLSNNQISKFPK-------ELFSTGSPLSSINLMG-NMLTEIPKNSLKDENENFKNTYLLTSIDLRFN-KLT 501 (636)
T ss_dssp CCCCEEEEECCSSCCCSCCT-------HHHHTTCCCSEEECCS-SCCSBCCSSSSEETTEECTTGGGCCEEECCSS-CCC
T ss_pred cCCCCCEEECcCCccCcCCH-------HHHccCCCCCEEECCC-CCCCCcCHHHhccccccccccCCccEEECcCC-cCC
Confidence 55678888888888775421 2334577888888888 4665322222210 112337888888776 355
Q ss_pred cccc-----cCCCccEEeccccccccccc---cccccccEEeccccccc-----c-cc--cc-cccCCcEEEecCCCCcc
Q 004729 625 VVRF-----CSTSLVSLSLVGCRAITALE---LKCPILEKVCLDGCDHI-----E-SA--SF-VPVALQSLNLGICPKLS 687 (733)
Q Consensus 625 ~~~~-----~~~sL~~L~L~~c~~L~~l~---~~~p~L~~L~L~~c~~L-----~-~~--~~-~~~~L~~L~L~~c~~L~ 687 (733)
.++. .+++|+.|+++++ .++.++ ..+++|++|+|++++.+ . .. .+ ...+|++|++++|. ++
T Consensus 502 ~lp~~~~~~~l~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~ 579 (636)
T 4eco_A 502 KLSDDFRATTLPYLVGIDLSYN-SFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSND-IR 579 (636)
T ss_dssp BCCGGGSTTTCTTCCEEECCSS-CCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC-CC
T ss_pred ccChhhhhccCCCcCEEECCCC-CCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCc-CC
Confidence 5542 5678888888874 454444 26788888888653311 1 11 11 23478888888875 67
Q ss_pred ccccCc-ccccEEEecCCCCCCcc-CC-------C---CCCccEEeccCccccc
Q 004729 688 TLGIEA-LHMVVLELKGCGVLSDA-YI-------N---CPLLTSLDASFCRCVA 729 (733)
Q Consensus 688 ~l~~~~-~~L~~L~l~~c~~L~~~-~~-------~---~p~L~~L~l~~C~~L~ 729 (733)
.+|... .+|+.|++++|+....- .. . +...+..++.+|++|.
T Consensus 580 ~ip~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~C~~L~ 633 (636)
T 4eco_A 580 KVNEKITPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIRGCDALD 633 (636)
T ss_dssp BCCSCCCTTCCEEECCSCTTCEEECTTTHHHHHTTCCEEECCTTSEEESCGGGC
T ss_pred ccCHhHhCcCCEEECcCCCCccccHHhcchhhhcccceeecCCccccCCCcccc
Confidence 777533 46888888888654211 11 1 2233556788998875
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=6.7e-23 Score=235.05 Aligned_cols=407 Identities=16% Similarity=0.109 Sum_probs=253.1
Q ss_pred CCccEEEEcCCCchhHHHHHHhhcCCCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEE
Q 004729 287 PNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLE 366 (733)
Q Consensus 287 ~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~ 366 (733)
++++.|++++. .+.......+..+++|++|+|++|.+....+..+..+++|++|++++|.+....+..+..+++|++|+
T Consensus 28 ~~l~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (570)
T 2z63_A 28 FSTKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (570)
T ss_dssp SSCCEEECCSC-CCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred ccccEEEccCC-ccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccc
Confidence 46888888874 34444444677888999999998888766566778889999999998887766666677888999999
Q ss_pred eeccccchhc----ccCCCCcEEEEcCCchH-----HHhhCCCCccEEEEecCCCCChHHHHHHHhcCCCC----cEEec
Q 004729 367 ITKCRVMRVS----IRCPQLEHLSLKRSNMA-----QAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQL----ESLDM 433 (733)
Q Consensus 367 L~~~~~~~i~----~~~~~L~~L~L~~~~l~-----~~~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L----~~L~L 433 (733)
+.+|.+..+. ..+++|++|+++++.+. ..+..+++|++|+++++ .+.... ...+..+++| +.|++
T Consensus 107 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n-~l~~~~-~~~~~~l~~L~~~~~~L~l 184 (570)
T 2z63_A 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIY-CTDLRVLHQMPLLNLSLDL 184 (570)
T ss_dssp CTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTS-CCCEEC-GGGGHHHHTCTTCCCEEEC
T ss_pred ccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCC-ccceec-HHHccchhccchhhhhccc
Confidence 9888776543 46788888888887543 44677888888888885 344321 1112233445 78888
Q ss_pred cCCCCCChhHHHHHHHhcccccccccccCCCC------------------------------------------------
Q 004729 434 SNCSCVSDESLREIALSCANLRILNSSYCPNI------------------------------------------------ 465 (733)
Q Consensus 434 ~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~~l------------------------------------------------ 465 (733)
+++. ++......+ ...+|+.|++.++...
T Consensus 185 ~~n~-l~~~~~~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~ 261 (570)
T 2z63_A 185 SLNP-MNFIQPGAF--KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEE 261 (570)
T ss_dssp TTCC-CCEECTTTT--TTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEE
T ss_pred CCCC-ceecCHHHh--ccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhh
Confidence 8776 333221111 1225666666543100
Q ss_pred -------------CcCCCCCCCccEEEeCCCCCCchHHHHHhhCCCCcCEEEEecCCCCccccc-CCCCCcEEEeccccC
Q 004729 466 -------------SLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSL-ELPRLQNIRLVHCRK 531 (733)
Q Consensus 466 -------------~~~~~~l~~L~~L~L~~c~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~-~l~~L~~L~L~~c~~ 531 (733)
......+++|++|++.++. +.. ....+..+ +|++|++++|.. ..++. .+++|+.|.+.++..
T Consensus 262 l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-l~~-l~~~~~~~-~L~~L~l~~n~~-~~l~~~~l~~L~~L~l~~n~~ 337 (570)
T 2z63_A 262 FRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVT-IER-VKDFSYNF-GWQHLELVNCKF-GQFPTLKLKSLKRLTFTSNKG 337 (570)
T ss_dssp EEEEETTEEESCSTTTTGGGTTCSEEEEESCE-ECS-CCBCCSCC-CCSEEEEESCBC-SSCCBCBCSSCCEEEEESCBS
T ss_pred hhhhcchhhhhhchhhhcCcCcccEEEecCcc-chh-hhhhhccC-CccEEeeccCcc-cccCcccccccCEEeCcCCcc
Confidence 0011123455555555431 221 11112233 555555555532 23332 245555555554432
Q ss_pred CccccccccccceeecccCcCCceeeeccCccccccccccccHHHHHhcCCCCcEEeecCCCCCChhhhhhhcCCCCCCC
Q 004729 532 FADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPM 611 (733)
Q Consensus 532 l~~l~l~~~~L~~l~l~~c~~L~~L~l~~n~L~~l~~~~~~~L~~l~~~~~~L~~L~Ls~C~~lt~~~~~~~~~~~~l~~ 611 (733)
.... ....+++|+.|++.+|.+..+.. .......+++|+.|++++| .++..... ...+++
T Consensus 338 ~~~~----------~~~~~~~L~~L~l~~n~l~~~~~-----~~~~~~~~~~L~~L~l~~n-~l~~~~~~----~~~l~~ 397 (570)
T 2z63_A 338 GNAF----------SEVDLPSLEFLDLSRNGLSFKGC-----CSQSDFGTTSLKYLDLSFN-GVITMSSN----FLGLEQ 397 (570)
T ss_dssp CCBC----------CCCBCTTCCEEECCSSCCBEEEE-----EEHHHHTCSCCCEEECCSC-SEEEEEEE----EETCTT
T ss_pred cccc----------ccccCCCCCEEeCcCCccCcccc-----ccccccccCccCEEECCCC-cccccccc----ccccCC
Confidence 1111 12567889999999888775421 1122347889999999985 55443222 357889
Q ss_pred ccEEEeecCCCCccc-c----ccCCCccEEeccccccccccc---cccccccEEeccccccccc-c--cc-cccCCcEEE
Q 004729 612 LKSLVLDNCEGLTVV-R----FCSTSLVSLSLVGCRAITALE---LKCPILEKVCLDGCDHIES-A--SF-VPVALQSLN 679 (733)
Q Consensus 612 L~~L~L~~c~~L~~~-~----~~~~sL~~L~L~~c~~L~~l~---~~~p~L~~L~L~~c~~L~~-~--~~-~~~~L~~L~ 679 (733)
|+.|++++|. +... + ..+++|+.|++++|.--...+ ..+++|++|++++|.-... . .+ ...+|++|+
T Consensus 398 L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~ 476 (570)
T 2z63_A 398 LEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD 476 (570)
T ss_dssp CCEEECTTSE-EESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEE
T ss_pred CCEEEccCCc-cccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEE
Confidence 9999998874 3332 1 267889999999874322222 3689999999999753211 1 11 245899999
Q ss_pred ecCCCCccccccC----cccccEEEecCCCCCCcc----CCCCCCccEEeccCcc
Q 004729 680 LGICPKLSTLGIE----ALHMVVLELKGCGVLSDA----YINCPLLTSLDASFCR 726 (733)
Q Consensus 680 L~~c~~L~~l~~~----~~~L~~L~l~~c~~L~~~----~~~~p~L~~L~l~~C~ 726 (733)
+++|. ++.++.. ..+|++|++++|.. +.+ ..++++|+.|++++++
T Consensus 477 l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 477 LSQCQ-LEQLSPTAFNSLSSLQVLNMASNQL-KSVPDGIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp CTTSC-CCEECTTTTTTCTTCCEEECCSSCC-SCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCc-cccCChhhhhcccCCCEEeCCCCcC-CCCCHHHhhcccCCcEEEecCCc
Confidence 99984 7776432 23699999999854 333 2378999999998754
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.5e-23 Score=246.69 Aligned_cols=422 Identities=13% Similarity=0.094 Sum_probs=258.3
Q ss_pred CCccEEEEcCCCchhHHHHHHhhcCCCCCEEEe-cCccCChH--------------------------------------
Q 004729 287 PNATEVNIYGAPAIHLLVMKAVSLLRNLEALTL-GRGQLGDA-------------------------------------- 327 (733)
Q Consensus 287 ~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~L-s~~~i~~~-------------------------------------- 327 (733)
.+++.|+|.+. .+....+..++.+++|++|+| ++|.+...
T Consensus 323 ~~V~~L~Ls~~-~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s 401 (876)
T 4ecn_A 323 GRVTGLSLAGF-GAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLS 401 (876)
T ss_dssp SCEEEEECTTT-CCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred CCEEEEECccC-CCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhh
Confidence 57899999884 455455577889999999999 66643221
Q ss_pred --HHHhccC-----------CCCCcEEEEec--CcCCcccccccccCCCccEEEeeccccch------------------
Q 004729 328 --FFHALAD-----------CSMLKSLNVND--ATLGNGVQEIPINHDQLRRLEITKCRVMR------------------ 374 (733)
Q Consensus 328 --~~~~L~~-----------~~~L~~L~L~~--~~l~~~~~~~~~~~~~L~~L~L~~~~~~~------------------ 374 (733)
....+.. ...++.+.+.. |.+.. ++..+..+++|+.|+|++|.+..
T Consensus 402 ~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~ 480 (876)
T 4ecn_A 402 DLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQY 480 (876)
T ss_dssp HHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHH
T ss_pred HHHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCccccccccccccccccc
Confidence 0000000 01111111111 22222 55556677888888888887665
Q ss_pred hcc-----cCCCCcEEEEcCCch----HHHhhCCCCccEEEEecCCCCChHHHHHHHh-------cCCCCcEEeccCCCC
Q 004729 375 VSI-----RCPQLEHLSLKRSNM----AQAVLNCPLLHLLDIASCHKLSDAAIRLAAT-------SCPQLESLDMSNCSC 438 (733)
Q Consensus 375 i~~-----~~~~L~~L~L~~~~l----~~~~~~~~~L~~L~L~~c~~l~~~~l~~l~~-------~~~~L~~L~L~~~~~ 438 (733)
++. .+++|+.|+|++|.+ ...+..+++|+.|+++++..++...++..+. .+++|+.|+++++.
T Consensus 481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~- 559 (876)
T 4ecn_A 481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN- 559 (876)
T ss_dssp TTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-
T ss_pred CChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc-
Confidence 442 567888888887753 3456778889999998864366523333233 34589999998877
Q ss_pred CChhHHHH--HHHhcccccccccccCCCCCc-CCCCCCCccEEEeCCCCCCchHHHHHhhCCCC-cCEEEEecCCCCccc
Q 004729 439 VSDESLRE--IALSCANLRILNSSYCPNISL-ESVRLPMLTVLQLHSCEGITSASMAAISHSYM-LEVLELDNCNLLTSV 514 (733)
Q Consensus 439 l~~~~l~~--l~~~~~~L~~L~L~~~~~l~~-~~~~l~~L~~L~L~~c~~l~~~~~~~l~~~~~-L~~L~L~~~~~l~~~ 514 (733)
++ .++. .+..+++|+.|+++++..... ....+++|+.|+++++ .+. .....+..+++ |+.|+|++|. +..+
T Consensus 560 L~--~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N-~l~-~lp~~l~~l~~~L~~L~Ls~N~-L~~l 634 (876)
T 4ecn_A 560 LE--EFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYN-QIE-EIPEDFCAFTDQVEGLGFSHNK-LKYI 634 (876)
T ss_dssp CC--BCCCHHHHTTCTTCCEEECTTSCCCBCCCCCTTSEESEEECCSS-CCS-CCCTTSCEECTTCCEEECCSSC-CCSC
T ss_pred CC--ccCChhhhhcCCCCCEEECCCCCcccchhhcCCCcceEEECcCC-ccc-cchHHHhhccccCCEEECcCCC-CCcC
Confidence 55 2333 445788899999988763222 3447888999999884 455 33344667777 9999999885 4466
Q ss_pred ccCC-----CCCcEEEeccccCCccccccccccceeecccCcCCceeeeccCccccccccccccHHHHHhcCCCCcEEee
Q 004729 515 SLEL-----PRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDL 589 (733)
Q Consensus 515 ~~~l-----~~L~~L~L~~c~~l~~l~l~~~~L~~l~l~~c~~L~~L~l~~n~L~~l~~~~~~~L~~l~~~~~~L~~L~L 589 (733)
|..+ ++|+.|.+.++.-..... .. ...+....+++|+.|++++|.+..+. ..+...+++|+.|+|
T Consensus 635 p~~~~~~~~~~L~~L~Ls~N~l~g~ip--~l-~~~l~~~~~~~L~~L~Ls~N~L~~lp-------~~~~~~l~~L~~L~L 704 (876)
T 4ecn_A 635 PNIFNAKSVYVMGSVDFSYNKIGSEGR--NI-SCSMDDYKGINASTVTLSYNEIQKFP-------TELFATGSPISTIIL 704 (876)
T ss_dssp CSCCCTTCSSCEEEEECCSSCTTTTSS--SC-SSCTTTCCCCCEEEEECCSSCCCSCC-------HHHHHTTCCCSEEEC
T ss_pred chhhhccccCCCCEEECcCCcCCCccc--cc-hhhhccccCCCcCEEEccCCcCCccC-------HHHHccCCCCCEEEC
Confidence 6432 347788877653211110 00 00111124457888888888887542 123446788999999
Q ss_pred cCCCCCChhhhhhhcC----CCCCCCccEEEeecCCCCccccc-----cCCCccEEeccccccccccc---cccccccEE
Q 004729 590 TDCESLTNSVCEVFSD----GGGCPMLKSLVLDNCEGLTVVRF-----CSTSLVSLSLVGCRAITALE---LKCPILEKV 657 (733)
Q Consensus 590 s~C~~lt~~~~~~~~~----~~~l~~L~~L~L~~c~~L~~~~~-----~~~sL~~L~L~~c~~L~~l~---~~~p~L~~L 657 (733)
++| .++......+.. ...+++|+.|+|++| .++.++. .+++|+.|+|+++ .++.++ ..+++|+.|
T Consensus 705 s~N-~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N-~L~~lp~~l~~~~l~~L~~L~Ls~N-~L~~lp~~l~~L~~L~~L 781 (876)
T 4ecn_A 705 SNN-LMTSIPENSLKPKDGNYKNTYLLTTIDLRFN-KLTSLSDDFRATTLPYLSNMDVSYN-CFSSFPTQPLNSSQLKAF 781 (876)
T ss_dssp CSC-CCSCCCTTSSSCTTSCCTTGGGCCEEECCSS-CCCCCCGGGSTTTCTTCCEEECCSS-CCSSCCCGGGGCTTCCEE
T ss_pred CCC-cCCccChHHhccccccccccCCccEEECCCC-CCccchHHhhhccCCCcCEEEeCCC-CCCccchhhhcCCCCCEE
Confidence 884 666332222211 123448999999887 4555543 4678899999885 455554 367889999
Q ss_pred eccccccc-----cc-c--cc-cccCCcEEEecCCCCccccccCc-ccccEEEecCCCCCCccCC--------CC---CC
Q 004729 658 CLDGCDHI-----ES-A--SF-VPVALQSLNLGICPKLSTLGIEA-LHMVVLELKGCGVLSDAYI--------NC---PL 716 (733)
Q Consensus 658 ~L~~c~~L-----~~-~--~~-~~~~L~~L~L~~c~~L~~l~~~~-~~L~~L~l~~c~~L~~~~~--------~~---p~ 716 (733)
+|++++.+ .. . .+ ...+|++|+|++|. +..+|... .+|+.|+|++|+...-... .. ..
T Consensus 782 ~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~-L~~Ip~~l~~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~ 860 (876)
T 4ecn_A 782 GIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSND-IRKVDEKLTPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLY 860 (876)
T ss_dssp ECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC-CCBCCSCCCSSSCEEECCSCTTCEEECGGGHHHHHTTCCEEEC
T ss_pred ECCCCCCcccccccccChHHHhcCCCCCEEECCCCC-CCccCHhhcCCCCEEECCCCCCCccChHHccccccchheeecC
Confidence 98774322 11 1 11 23578999998885 68877643 3688999999876431111 11 11
Q ss_pred ccEEeccCcccccc
Q 004729 717 LTSLDASFCRCVAS 730 (733)
Q Consensus 717 L~~L~l~~C~~L~~ 730 (733)
-+..++.+|++|.-
T Consensus 861 n~~~~I~gC~~L~l 874 (876)
T 4ecn_A 861 DKTQDIRGCDALGI 874 (876)
T ss_dssp CTTSEEESCGGGCC
T ss_pred CCccccCCCCCccc
Confidence 12346788988753
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.1e-22 Score=243.97 Aligned_cols=422 Identities=19% Similarity=0.145 Sum_probs=223.1
Q ss_pred hCCCccEEEEcCCCchhHHHHHHhhcCCCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCccccc--ccccCCCc
Q 004729 285 RYPNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQE--IPINHDQL 362 (733)
Q Consensus 285 ~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~--~~~~~~~L 362 (733)
.+++|+.|+++++..........+..+++|++|+|++|.+....+..+..+++|++|+|++|.+....+. ....+++|
T Consensus 46 ~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L 125 (844)
T 3j0a_A 46 FLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKAL 125 (844)
T ss_dssp SCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSC
T ss_pred ccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCC
Confidence 4555666666654332222234455666666666666666554455566666666666666655543222 24456666
Q ss_pred cEEEeeccccchh-----cccCCCCcEEEEcCCchHH----HhhCC--CCccEEEEecCCCCChHHHHHHHhcCC-----
Q 004729 363 RRLEITKCRVMRV-----SIRCPQLEHLSLKRSNMAQ----AVLNC--PLLHLLDIASCHKLSDAAIRLAATSCP----- 426 (733)
Q Consensus 363 ~~L~L~~~~~~~i-----~~~~~~L~~L~L~~~~l~~----~~~~~--~~L~~L~L~~c~~l~~~~l~~l~~~~~----- 426 (733)
++|++++|.+..+ ...+++|+.|++++|.+.. .+..+ ++|+.|+++.+. +.... ...+..++
T Consensus 126 ~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~-l~~~~-~~~~~~~~~~~~~ 203 (844)
T 3j0a_A 126 TRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANS-LYSRV-SVDWGKCMNPFRN 203 (844)
T ss_dssp CEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSB-SCCCC-CCCCCSSSCTTTT
T ss_pred CEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCc-ccccc-ccchhhcCCcccc
Confidence 6666666654432 2345666666666654321 11122 455555555532 21100 00011122
Q ss_pred -CCcEEeccCCCCCChhHHHHHHH-------------------------------------hcccccccccccCCCCC--
Q 004729 427 -QLESLDMSNCSCVSDESLREIAL-------------------------------------SCANLRILNSSYCPNIS-- 466 (733)
Q Consensus 427 -~L~~L~L~~~~~l~~~~l~~l~~-------------------------------------~~~~L~~L~L~~~~~l~-- 466 (733)
.|+.|+++++. ++......+.. ..++|+.|+++++....
T Consensus 204 ~~L~~L~Ls~n~-l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~ 282 (844)
T 3j0a_A 204 MVLEILDVSGNG-WTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLN 282 (844)
T ss_dssp CCBSEEBCSSCC-SSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEEC
T ss_pred CceeEEecCCCc-CchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccC
Confidence 37777777663 22111111100 12456666666554221
Q ss_pred -cCCCCCCCccEEEeCCCCCCchHHHHHhhCCCCcCEEEEecCCCCccccc---CCCCCcEEEeccccCCcccccccccc
Q 004729 467 -LESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSL---ELPRLQNIRLVHCRKFADLNLRAMML 542 (733)
Q Consensus 467 -~~~~~l~~L~~L~L~~c~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~---~l~~L~~L~L~~c~~l~~l~l~~~~L 542 (733)
.....+++|+.|++.+ +.+.......+..+++|++|++++|......+. .+++|+.|.+.++ .+..+.-
T Consensus 283 ~~~~~~l~~L~~L~L~~-n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~----- 355 (844)
T 3j0a_A 283 SRVFETLKDLKVLNLAY-NKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKN-HIAIIQD----- 355 (844)
T ss_dssp SCCSSSCCCCCEEEEES-CCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSC-CCCCCCS-----
T ss_pred hhhhhcCCCCCEEECCC-CcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCC-CCCccCh-----
Confidence 2223566777777776 345554444566677777777777643222121 2566666666543 1221110
Q ss_pred ceeecccCcCCceeeeccCcccccccc--------ccccHHHHHhcCCCCcEEeecCCCCCChhhhhhhcCCCCCCCccE
Q 004729 543 SSIMVSNCAALHRINITSNSLQKLSLQ--------KQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKS 614 (733)
Q Consensus 543 ~~l~l~~c~~L~~L~l~~n~L~~l~~~--------~~~~L~~l~~~~~~L~~L~Ls~C~~lt~~~~~~~~~~~~l~~L~~ 614 (733)
-.+..+++|+.|++++|.++.+... ....+..+.....+++.|++++ +.+++.....+ ...+++|+.
T Consensus 356 --~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~-N~l~~l~~~~~--~~~l~~L~~ 430 (844)
T 3j0a_A 356 --QTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSE-NRLENLDILYF--LLRVPHLQI 430 (844)
T ss_dssp --SCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCS-CCCCSSTTHHH--HTTCTTCCE
T ss_pred --hhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCcccccccccccceeeccc-CccccCchhhh--hhcCCccce
Confidence 0244556666666666655543210 0000001111234556666665 34443221111 246888899
Q ss_pred EEeecCCCCccc-----cccCCCccEEecccccccccc---------ccccccccEEeccccccccccc---c-cccCCc
Q 004729 615 LVLDNCEGLTVV-----RFCSTSLVSLSLVGCRAITAL---------ELKCPILEKVCLDGCDHIESAS---F-VPVALQ 676 (733)
Q Consensus 615 L~L~~c~~L~~~-----~~~~~sL~~L~L~~c~~L~~l---------~~~~p~L~~L~L~~c~~L~~~~---~-~~~~L~ 676 (733)
|+|+++. ++.. ...+++|+.|+++++ .++.+ ...+++|++|+|+++ .++... + ...+|+
T Consensus 431 L~Ls~N~-l~~~~~~~~~~~~~~L~~L~Ls~N-~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~ 507 (844)
T 3j0a_A 431 LILNQNR-FSSCSGDQTPSENPSLEQLFLGEN-MLQLAWETELCWDVFEGLSHLQVLYLNHN-YLNSLPPGVFSHLTALR 507 (844)
T ss_dssp EEEESCC-CCCCCSSSSSCSCTTCCBCEEESC-CCSSSCCSCCCSSCSSCBCCEECCCCCHH-HHTTCCTTSSSSCCSCS
T ss_pred eeCCCCc-ccccccccccccCCccccccCCCC-ccccccccccchhhhcCcccccEEECCCC-cccccChhHccchhhhh
Confidence 9988873 4432 225678888888884 33321 235788889998884 444422 2 245889
Q ss_pred EEEecCCCCccccccCc--ccccEEEecCCCCCCccCCCCCCccEEeccCc
Q 004729 677 SLNLGICPKLSTLGIEA--LHMVVLELKGCGVLSDAYINCPLLTSLDASFC 725 (733)
Q Consensus 677 ~L~L~~c~~L~~l~~~~--~~L~~L~l~~c~~L~~~~~~~p~L~~L~l~~C 725 (733)
+|+|+++ +|+.++... .+|+.|+++++..-......+++|+.|++++.
T Consensus 508 ~L~Ls~N-~l~~l~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~L~~l~l~~N 557 (844)
T 3j0a_A 508 GLSLNSN-RLTVLSHNDLPANLEILDISRNQLLAPNPDVFVSLSVLDITHN 557 (844)
T ss_dssp EEEEESC-CCSSCCCCCCCSCCCEEEEEEECCCCCCSCCCSSCCEEEEEEE
T ss_pred eeECCCC-CCCccChhhhhccccEEECCCCcCCCCChhHhCCcCEEEecCC
Confidence 9999888 588776544 36888999887665544446778888888753
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=5.2e-22 Score=238.18 Aligned_cols=409 Identities=17% Similarity=0.128 Sum_probs=252.6
Q ss_pred CCCccEEEEcCCCchhHHHHHHhhcCCCCCEEEecCccCChHH-HHhccCCCCCcEEEEecCcCCcccccccccCCCccE
Q 004729 286 YPNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAF-FHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRR 364 (733)
Q Consensus 286 ~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~i~~~~-~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~ 364 (733)
.++++.|++++. .+.......+..+++|++|+|++|.....+ +..+.++++|++|+|++|.+....+..+..+++|++
T Consensus 23 p~~l~~LdLs~N-~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 101 (844)
T 3j0a_A 23 LNTTERLLLSFN-YIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFE 101 (844)
T ss_dssp CTTCCEEEEESC-CCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCC
T ss_pred CCCcCEEECCCC-cCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCE
Confidence 357888998874 455444556778889999999888444333 566788899999999998888776777788899999
Q ss_pred EEeeccccch-h-----cccCCCCcEEEEcCCchH-----HHhhCCCCccEEEEecCCCCCh---HHHHHHHhcCCCCcE
Q 004729 365 LEITKCRVMR-V-----SIRCPQLEHLSLKRSNMA-----QAVLNCPLLHLLDIASCHKLSD---AAIRLAATSCPQLES 430 (733)
Q Consensus 365 L~L~~~~~~~-i-----~~~~~~L~~L~L~~~~l~-----~~~~~~~~L~~L~L~~c~~l~~---~~l~~l~~~~~~L~~ 430 (733)
|++++|.+.. + ...+++|+.|+|++|.+. ..+..+++|++|+++++ .+.. ..+..+.. ++|+.
T Consensus 102 L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N-~i~~~~~~~l~~l~~--~~L~~ 178 (844)
T 3j0a_A 102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSN-QIFLVCEHELEPLQG--KTLSF 178 (844)
T ss_dssp EECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESS-CCCCCCSGGGHHHHH--CSSCC
T ss_pred eeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCC-cCCeeCHHHcccccC--Cccce
Confidence 9999887653 1 356888999999887654 34678888999998885 3332 22222211 68888
Q ss_pred EeccCCCCCChhHHHHHHHhcc------cccccccccCCCCC---cC---------------------------------
Q 004729 431 LDMSNCSCVSDESLREIALSCA------NLRILNSSYCPNIS---LE--------------------------------- 468 (733)
Q Consensus 431 L~L~~~~~l~~~~l~~l~~~~~------~L~~L~L~~~~~l~---~~--------------------------------- 468 (733)
|+++.+. +.......+ ..++ .|+.|+++++.... ..
T Consensus 179 L~L~~n~-l~~~~~~~~-~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~ 256 (844)
T 3j0a_A 179 FSLAANS-LYSRVSVDW-GKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPD 256 (844)
T ss_dssp CEECCSB-SCCCCCCCC-CSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGG
T ss_pred EECCCCc-cccccccch-hhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCC
Confidence 8888776 332111111 0222 38888888763110 00
Q ss_pred -----CCCCCCccEEEeCCCCCCchHHHHHhhCCCCcCEEEEecCCCCccccc---CCCCCcEEEeccccCCcccccccc
Q 004729 469 -----SVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSL---ELPRLQNIRLVHCRKFADLNLRAM 540 (733)
Q Consensus 469 -----~~~l~~L~~L~L~~c~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~---~l~~L~~L~L~~c~~l~~l~l~~~ 540 (733)
....++|++|+++++ .+.......+..+++|+.|+|++|......+. .+++|+.|.+.++. ++.+.
T Consensus 257 ~~~f~~l~~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~---- 330 (844)
T 3j0a_A 257 QNTFAGLARSSVRHLDLSHG-FVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNL-LGELY---- 330 (844)
T ss_dssp GTTTTTTTTSCCCEEECTTC-CCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCC-CSCCC----
T ss_pred hhhhhccccCCccEEECCCC-cccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCC-CCccC----
Confidence 001245666666663 34443334455566666666666643222121 24555666555442 11110
Q ss_pred ccceeecccCcCCceeeeccCccccccccccccHHHHHhcCCCCcEEeecCCCCCChhhhhhhcCCCCCCCccEEEeecC
Q 004729 541 MLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNC 620 (733)
Q Consensus 541 ~L~~l~l~~c~~L~~L~l~~n~L~~l~~~~~~~L~~l~~~~~~L~~L~Ls~C~~lt~~~~~~~~~~~~l~~L~~L~L~~c 620 (733)
.-.+..+++|+.|++.+|.+..+.... +..+++|+.|++++| .++. + ..+++|+.|.++++
T Consensus 331 ---~~~~~~l~~L~~L~L~~N~i~~~~~~~-------~~~l~~L~~L~Ls~N-~l~~-----i---~~~~~L~~L~l~~N 391 (844)
T 3j0a_A 331 ---SSNFYGLPKVAYIDLQKNHIAIIQDQT-------FKFLEKLQTLDLRDN-ALTT-----I---HFIPSIPDIFLSGN 391 (844)
T ss_dssp ---SCSCSSCTTCCEEECCSCCCCCCCSSC-------SCSCCCCCEEEEETC-CSCC-----C---SSCCSCSEEEEESC
T ss_pred ---HHHhcCCCCCCEEECCCCCCCccChhh-------hcCCCCCCEEECCCC-CCCc-----c---cCCCCcchhccCCC
Confidence 012566777777777777776553221 124667788888774 4442 1 33677788887776
Q ss_pred CCCccccccCCCccEEeccccccccccc-----cccccccEEecccccccccc-----cccccCCcEEEecCCCCccccc
Q 004729 621 EGLTVVRFCSTSLVSLSLVGCRAITALE-----LKCPILEKVCLDGCDHIESA-----SFVPVALQSLNLGICPKLSTLG 690 (733)
Q Consensus 621 ~~L~~~~~~~~sL~~L~L~~c~~L~~l~-----~~~p~L~~L~L~~c~~L~~~-----~~~~~~L~~L~L~~c~~L~~l~ 690 (733)
.++.++....+++.|++++ +.++.+. ..+|+|++|+++++ .++.. .....+|++|+++++. ++.++
T Consensus 392 -~l~~l~~~~~~l~~L~ls~-N~l~~l~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~L~~L~Ls~N~-l~~~~ 467 (844)
T 3j0a_A 392 -KLVTLPKINLTANLIHLSE-NRLENLDILYFLLRVPHLQILILNQN-RFSSCSGDQTPSENPSLEQLFLGENM-LQLAW 467 (844)
T ss_dssp -CCCCCCCCCTTCCEEECCS-CCCCSSTTHHHHTTCTTCCEEEEESC-CCCCCCSSSSSCSCTTCCBCEEESCC-CSSSC
T ss_pred -Ccccccccccccceeeccc-CccccCchhhhhhcCCccceeeCCCC-cccccccccccccCCccccccCCCCc-ccccc
Confidence 4566666677788888877 3455443 26889999999884 34421 1124588899988874 54332
Q ss_pred c---------CcccccEEEecCCCCC---CccCCCCCCccEEeccCcccccc
Q 004729 691 I---------EALHMVVLELKGCGVL---SDAYINCPLLTSLDASFCRCVAS 730 (733)
Q Consensus 691 ~---------~~~~L~~L~l~~c~~L---~~~~~~~p~L~~L~l~~C~~L~~ 730 (733)
. ...+|+.|++++|..- +....++++|+.|+++++. |+.
T Consensus 468 ~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~ 518 (844)
T 3j0a_A 468 ETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNR-LTV 518 (844)
T ss_dssp CSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCC-CSS
T ss_pred ccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCC-CCc
Confidence 1 1235888888886432 2223378999999999873 443
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=4.6e-22 Score=228.12 Aligned_cols=414 Identities=16% Similarity=0.112 Sum_probs=283.3
Q ss_pred CCeeEEeeCCCCCCHHHHHHHHhhCCCccEEEEcCCCchhHHHHHHhhcCCCCCEEEecCccCChHHHHhccCCCCCcEE
Q 004729 262 DFWRCLNFENRKISVEQFEDVCQRYPNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSL 341 (733)
Q Consensus 262 ~lw~~l~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L 341 (733)
...+.+++....+.... ...+..+++++.|+++++ .+.......+..+++|++|+|++|.+....+..+..+++|++|
T Consensus 28 ~~l~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLG-SYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 105 (570)
T ss_dssp SSCCEEECCSCCCCEEC-TTTTTTCSSCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred ccccEEEccCCccCccC-hhHhhCCCCceEEECCCC-cCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccc
Confidence 34567777664433110 113456889999999985 3444445567889999999999999987666788899999999
Q ss_pred EEecCcCCcccccccccCCCccEEEeeccccch-----hcccCCCCcEEEEcCCchHH----HhhCCCCc----cEEEEe
Q 004729 342 NVNDATLGNGVQEIPINHDQLRRLEITKCRVMR-----VSIRCPQLEHLSLKRSNMAQ----AVLNCPLL----HLLDIA 408 (733)
Q Consensus 342 ~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~-----i~~~~~~L~~L~L~~~~l~~----~~~~~~~L----~~L~L~ 408 (733)
++++|.+..........+++|++|++++|.+.. ....+++|+.|+++++.+.. .+..+++| +.|+++
T Consensus 106 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~ 185 (570)
T 2z63_A 106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 185 (570)
T ss_dssp ECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECT
T ss_pred cccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccC
Confidence 999998776544446789999999999998654 23568999999999987653 24455666 889998
Q ss_pred cCCCCChHHHHHHHhcCCCCcEEeccCCCCCChhHHH-------------------------------------------
Q 004729 409 SCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLR------------------------------------------- 445 (733)
Q Consensus 409 ~c~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~l~------------------------------------------- 445 (733)
++ .+..... ..+.. .+|+.|+++++.. ....+.
T Consensus 186 ~n-~l~~~~~-~~~~~-~~L~~L~l~~n~~-~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~ 261 (570)
T 2z63_A 186 LN-PMNFIQP-GAFKE-IRLHKLTLRNNFD-SLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEE 261 (570)
T ss_dssp TC-CCCEECT-TTTTT-CEEEEEEEESCCS-CTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEE
T ss_pred CC-CceecCH-HHhcc-CcceeEecccccc-cccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhh
Confidence 85 3443221 12222 3788888877531 111111
Q ss_pred --------------HHHHhcccccccccccCC--CCCcCCCCCCCccEEEeCCCCCCchHHHHHhhCCCCcCEEEEecCC
Q 004729 446 --------------EIALSCANLRILNSSYCP--NISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCN 509 (733)
Q Consensus 446 --------------~l~~~~~~L~~L~L~~~~--~l~~~~~~l~~L~~L~L~~c~~l~~~~~~~l~~~~~L~~L~L~~~~ 509 (733)
..+..+++|++|++.++. .++.....+ +|++|++.+|. +.... ...+++|++|++.+|.
T Consensus 262 l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~-~~~l~---~~~l~~L~~L~l~~n~ 336 (570)
T 2z63_A 262 FRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCK-FGQFP---TLKLKSLKRLTFTSNK 336 (570)
T ss_dssp EEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCB-CSSCC---BCBCSSCCEEEEESCB
T ss_pred hhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCc-ccccC---cccccccCEEeCcCCc
Confidence 112346788888888775 333344456 99999999964 44221 1468899999999987
Q ss_pred CCcccc-cCCCCCcEEEeccccCCccccccccccceeecccCcCCceeeeccCccccccccccccHHHHHhcCCCCcEEe
Q 004729 510 LLTSVS-LELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVD 588 (733)
Q Consensus 510 ~l~~~~-~~l~~L~~L~L~~c~~l~~l~l~~~~L~~l~l~~c~~L~~L~l~~n~L~~l~~~~~~~L~~l~~~~~~L~~L~ 588 (733)
.....+ ..+++|+.|++.++. ++..... ...+..+++|+.|++.+|.+..+... ...+++|+.|+
T Consensus 337 ~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~-----~~~~~~~~~L~~L~l~~n~l~~~~~~--------~~~l~~L~~L~ 402 (570)
T 2z63_A 337 GGNAFSEVDLPSLEFLDLSRNG-LSFKGCC-----SQSDFGTTSLKYLDLSFNGVITMSSN--------FLGLEQLEHLD 402 (570)
T ss_dssp SCCBCCCCBCTTCCEEECCSSC-CBEEEEE-----EHHHHTCSCCCEEECCSCSEEEEEEE--------EETCTTCCEEE
T ss_pred cccccccccCCCCCEEeCcCCc-cCccccc-----cccccccCccCEEECCCCcccccccc--------ccccCCCCEEE
Confidence 555444 347889999887763 2222100 11257789999999999988775421 23678999999
Q ss_pred ecCCCCCChhhhhhhcCCCCCCCccEEEeecCCCCccc-c---ccCCCccEEeccccccc-cccc---cccccccEEecc
Q 004729 589 LTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVV-R---FCSTSLVSLSLVGCRAI-TALE---LKCPILEKVCLD 660 (733)
Q Consensus 589 Ls~C~~lt~~~~~~~~~~~~l~~L~~L~L~~c~~L~~~-~---~~~~sL~~L~L~~c~~L-~~l~---~~~p~L~~L~L~ 660 (733)
+++| .++.... ......+++|+.|++++|. +... + ..+++|+.|++++|.-. ..++ ..+++|++|+++
T Consensus 403 l~~n-~l~~~~~--~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~ 478 (570)
T 2z63_A 403 FQHS-NLKQMSE--FSVFLSLRNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 478 (570)
T ss_dssp CTTS-EEESCTT--SCTTTTCTTCCEEECTTSC-CEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECT
T ss_pred ccCC-ccccccc--hhhhhcCCCCCEEeCcCCc-ccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECC
Confidence 9995 4543321 1123678999999999985 4333 2 25789999999997532 1232 478999999999
Q ss_pred cccccccc---cc-cccCCcEEEecCCCCccccccCc----ccccEEEecCCCC
Q 004729 661 GCDHIESA---SF-VPVALQSLNLGICPKLSTLGIEA----LHMVVLELKGCGV 706 (733)
Q Consensus 661 ~c~~L~~~---~~-~~~~L~~L~L~~c~~L~~l~~~~----~~L~~L~l~~c~~ 706 (733)
+|. ++.. .+ ...+|++|++++| +++.++... .+|+.|++++++.
T Consensus 479 ~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~~ 530 (570)
T 2z63_A 479 QCQ-LEQLSPTAFNSLSSLQVLNMASN-QLKSVPDGIFDRLTSLQKIWLHTNPW 530 (570)
T ss_dssp TSC-CCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CCc-cccCChhhhhcccCCCEEeCCCC-cCCCCCHHHhhcccCCcEEEecCCcc
Confidence 964 4433 22 2358999999998 588876443 3689999998764
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.87 E-value=7.9e-22 Score=227.31 Aligned_cols=40 Identities=23% Similarity=0.368 Sum_probs=19.9
Q ss_pred HhcCCCCcEEeccCCCCCChhHHHHHHHhcccccccccccC
Q 004729 422 ATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYC 462 (733)
Q Consensus 422 ~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~ 462 (733)
...+++|++|++++|. +++..+..+...+++|++|.+.+|
T Consensus 285 ~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~ 324 (594)
T 2p1m_B 285 YSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDY 324 (594)
T ss_dssp HHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGG
T ss_pred HHhhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCc
Confidence 3344555555555554 444444444444555555555544
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=3e-21 Score=218.99 Aligned_cols=406 Identities=14% Similarity=0.100 Sum_probs=219.0
Q ss_pred CCccEEEEcCCCchhHHHHHHhhcCCCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEE
Q 004729 287 PNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLE 366 (733)
Q Consensus 287 ~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~ 366 (733)
++++.|+++++ .+.......+..+++|++|+|++|.++...+..+..+++|++|+|++|.+. .++.. .+++|++|+
T Consensus 21 ~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~ 96 (520)
T 2z7x_B 21 QKTTILNISQN-YISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLD 96 (520)
T ss_dssp TTCSEEECCSS-CCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEE
T ss_pred ccccEEECCCC-cccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEe
Confidence 45666666653 233333445566666666666666666544555666666666666666655 23322 566666666
Q ss_pred eeccccch-----hcccCCCCcEEEEcCCchHH-HhhCCCCc--cEEEEecCCCC-ChHHHHHHHhcCCCCc----EEec
Q 004729 367 ITKCRVMR-----VSIRCPQLEHLSLKRSNMAQ-AVLNCPLL--HLLDIASCHKL-SDAAIRLAATSCPQLE----SLDM 433 (733)
Q Consensus 367 L~~~~~~~-----i~~~~~~L~~L~L~~~~l~~-~~~~~~~L--~~L~L~~c~~l-~~~~l~~l~~~~~~L~----~L~L 433 (733)
+++|.+.. ....+++|+.|+++++.+.. .+..+++| ++|+++++.-. .... ...+..|+ .+++
T Consensus 97 L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~l~~n~l~~~~~~----~~~l~~l~~~~l~l~l 172 (520)
T 2z7x_B 97 LSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKED----PEGLQDFNTESLHIVF 172 (520)
T ss_dssp CCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGGGGGGGTTSCEEEEEEEECTTTTSSCC----TTTTTTCCEEEEEEEC
T ss_pred ccCCccccccchhhhccCCcceEEEecCcccchhhccccccceeeEEEeecccccccccc----cccccccccceEEEEe
Confidence 66665443 12345566666666555432 23444555 66666654210 1000 01122222 2333
Q ss_pred cCCCCCChhHHHHHHHhcccccccccccCCC---------CCcCCCCCCCccEEEeCCCCCCchHHHHHhh---CCCCcC
Q 004729 434 SNCSCVSDESLREIALSCANLRILNSSYCPN---------ISLESVRLPMLTVLQLHSCEGITSASMAAIS---HSYMLE 501 (733)
Q Consensus 434 ~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~~---------l~~~~~~l~~L~~L~L~~c~~l~~~~~~~l~---~~~~L~ 501 (733)
.++. +...........+++|+.|+++++.. .......+++|+.|++.++ .+.+..+..+. ..++|+
T Consensus 173 ~~n~-~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~-~l~~~~~~~~~~~~~~~~L~ 250 (520)
T 2z7x_B 173 PTNK-EFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNI-ETTWNSFIRILQLVWHTTVW 250 (520)
T ss_dssp CSSS-CCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEE-EEEHHHHHHHHHHHHTSSCS
T ss_pred ccCc-chhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhcccccc-ccCHHHHHHHHHHhhhCccc
Confidence 3332 11111111112456666666665430 0012235667777777763 34433332222 245777
Q ss_pred EEEEecCCCCcccccCC--------CCCcEEEeccccCCccccccccccceeecccCcCCceeeeccCcccccccccccc
Q 004729 502 VLELDNCNLLTSVSLEL--------PRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQEN 573 (733)
Q Consensus 502 ~L~L~~~~~l~~~~~~l--------~~L~~L~L~~c~~l~~l~l~~~~L~~l~l~~c~~L~~L~l~~n~L~~l~~~~~~~ 573 (733)
+|++++|.....+|..+ ++|+.+.+.++.- . +....+. .+....+|+.|++.+|.+..+..
T Consensus 251 ~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~--~p~~~~~--~~~~~~~L~~L~l~~n~l~~~~~----- 319 (520)
T 2z7x_B 251 YFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--G--FPQSYIY--EIFSNMNIKNFTVSGTRMVHMLC----- 319 (520)
T ss_dssp EEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--C--SCTHHHH--HHHHTCCCSEEEEESSCCCCCCC-----
T ss_pred EEEeecccccCccccchhhcccccCceeEeccccccce--e--cchhhhh--cccccCceeEEEcCCCccccccc-----
Confidence 78777774332444332 3333333333211 0 0000000 00111457888888887765432
Q ss_pred HHHHHhcCCCCcEEeecCCCCCChhhhhhhcCCCCCCCccEEEeecCCCCcccc------ccCCCccEEeccccccccc-
Q 004729 574 LTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVR------FCSTSLVSLSLVGCRAITA- 646 (733)
Q Consensus 574 L~~l~~~~~~L~~L~Ls~C~~lt~~~~~~~~~~~~l~~L~~L~L~~c~~L~~~~------~~~~sL~~L~L~~c~~L~~- 646 (733)
...+++|+.|++++| .+++..+..+ +.+++|+.|++++|. ++.++ ..+++|+.|+++++. +..
T Consensus 320 ----~~~l~~L~~L~Ls~n-~l~~~~~~~~---~~l~~L~~L~L~~N~-l~~l~~~~~~~~~l~~L~~L~Ls~N~-l~~~ 389 (520)
T 2z7x_B 320 ----PSKISPFLHLDFSNN-LLTDTVFENC---GHLTELETLILQMNQ-LKELSKIAEMTTQMKSLQQLDISQNS-VSYD 389 (520)
T ss_dssp ----CSSCCCCCEEECCSS-CCCTTTTTTC---CCCSSCCEEECCSSC-CCBHHHHHHHHTTCTTCCEEECCSSC-CBCC
T ss_pred ----hhhCCcccEEEeECC-ccChhhhhhh---ccCCCCCEEEccCCc-cCccccchHHHhhCCCCCEEECCCCc-CCcc
Confidence 125678888888884 6665443333 678888888888874 54321 267888888888853 444
Q ss_pred cc----cccccccEEeccccccccccc--ccccCCcEEEecCCCCccccccC---cccccEEEecCCCCCCccCC----C
Q 004729 647 LE----LKCPILEKVCLDGCDHIESAS--FVPVALQSLNLGICPKLSTLGIE---ALHMVVLELKGCGVLSDAYI----N 713 (733)
Q Consensus 647 l~----~~~p~L~~L~L~~c~~L~~~~--~~~~~L~~L~L~~c~~L~~l~~~---~~~L~~L~l~~c~~L~~~~~----~ 713 (733)
++ ..+++|++|++++|. ++... ..+.+|++|++++| +++.+|.. ..+|++|++++|.. +.+.. .
T Consensus 390 l~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~N~l-~~l~~~~~~~ 466 (520)
T 2z7x_B 390 EKKGDCSWTKSLLSLNMSSNI-LTDTIFRCLPPRIKVLDLHSN-KIKSIPKQVVKLEALQELNVASNQL-KSVPDGIFDR 466 (520)
T ss_dssp GGGCSCCCCTTCCEEECCSSC-CCGGGGGSCCTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSSCC-CCCCTTTTTT
T ss_pred cccchhccCccCCEEECcCCC-CCcchhhhhcccCCEEECCCC-cccccchhhhcCCCCCEEECCCCcC-CccCHHHhcc
Confidence 44 256888888888854 43221 12358889999888 47777643 23688899988753 33332 6
Q ss_pred CCCccEEeccCcc
Q 004729 714 CPLLTSLDASFCR 726 (733)
Q Consensus 714 ~p~L~~L~l~~C~ 726 (733)
+++|+.|++++++
T Consensus 467 l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 467 LTSLQKIWLHTNP 479 (520)
T ss_dssp CTTCCEEECCSSC
T ss_pred CCcccEEECcCCC
Confidence 7889999998765
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.9e-20 Score=212.40 Aligned_cols=397 Identities=16% Similarity=0.169 Sum_probs=267.7
Q ss_pred CCeeEEeeCCCCCCHHHHHHHHhhCCCccEEEEcCCCchhHHHHHHhhcCCCCCEEEecCccCChHHHHhccCCCCCcEE
Q 004729 262 DFWRCLNFENRKISVEQFEDVCQRYPNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSL 341 (733)
Q Consensus 262 ~lw~~l~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L 341 (733)
...+.+++....+... ....+..+++++.|++++. .+....+..++.+++|++|+|++|.++. ++.. .+++|++|
T Consensus 21 ~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~--~l~~L~~L 95 (520)
T 2z7x_B 21 QKTTILNISQNYISEL-WTSDILSLSKLRILIISHN-RIQYLDISVFKFNQELEYLDLSHNKLVK-ISCH--PTVNLKHL 95 (520)
T ss_dssp TTCSEEECCSSCCCCC-CHHHHTTCTTCCEEECCSS-CCCEEEGGGGTTCTTCCEEECCSSCCCE-EECC--CCCCCSEE
T ss_pred ccccEEECCCCccccc-ChhhccccccccEEecCCC-ccCCcChHHhhcccCCCEEecCCCceee-cCcc--ccCCccEE
Confidence 3456777776554321 1234567899999999984 4555555678899999999999999883 3333 79999999
Q ss_pred EEecCcCCc-ccccccccCCCccEEEeeccccch-hcccCCCC--cEEEEcCCch--H----HHh---------------
Q 004729 342 NVNDATLGN-GVQEIPINHDQLRRLEITKCRVMR-VSIRCPQL--EHLSLKRSNM--A----QAV--------------- 396 (733)
Q Consensus 342 ~L~~~~l~~-~~~~~~~~~~~L~~L~L~~~~~~~-i~~~~~~L--~~L~L~~~~l--~----~~~--------------- 396 (733)
++++|.+.. .++.....+++|++|++++|.+.. ....+++| +.|+++++.+ . ..+
T Consensus 96 ~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n 175 (520)
T 2z7x_B 96 DLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTN 175 (520)
T ss_dssp ECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGGGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSS
T ss_pred eccCCccccccchhhhccCCcceEEEecCcccchhhccccccceeeEEEeecccccccccccccccccccceEEEEeccC
Confidence 999999876 456677899999999999998753 33567788 9999998876 1 111
Q ss_pred -----------hCCCCccEEEEecCCC---CC--hHHHHHHHhcCCCCcEEeccCCCCCChhHHHHHHH--hcccccccc
Q 004729 397 -----------LNCPLLHLLDIASCHK---LS--DAAIRLAATSCPQLESLDMSNCSCVSDESLREIAL--SCANLRILN 458 (733)
Q Consensus 397 -----------~~~~~L~~L~L~~c~~---l~--~~~l~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~--~~~~L~~L~ 458 (733)
..+++|+.|+++++.. .. ...++ .+..+++|+.|++.++. ++...+..+.. .+++|++|+
T Consensus 176 ~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~-l~~~~~~~~~~~~~~~~L~~L~ 253 (520)
T 2z7x_B 176 KEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIE-TTWNSFIRILQLVWHTTVWYFS 253 (520)
T ss_dssp SCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEE-EEHHHHHHHHHHHHTSSCSEEE
T ss_pred cchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccc-cCHHHHHHHHHHhhhCcccEEE
Confidence 2367788888887531 10 11122 45678999999999876 66665555543 356999999
Q ss_pred cccCC---CCCcCC-----CCCCCccEEEeCCCCC-CchHHHHHhhCCCCcCEEEEecCCCCcccc--cCCCCCcEEEec
Q 004729 459 SSYCP---NISLES-----VRLPMLTVLQLHSCEG-ITSASMAAISHSYMLEVLELDNCNLLTSVS--LELPRLQNIRLV 527 (733)
Q Consensus 459 L~~~~---~l~~~~-----~~l~~L~~L~L~~c~~-l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~--~~l~~L~~L~L~ 527 (733)
++++. .++... ..+++|+.+++.++.. +....+..+....+|+.|++++|.. ...+ ..+++|+.|++.
T Consensus 254 l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l-~~~~~~~~l~~L~~L~Ls 332 (520)
T 2z7x_B 254 ISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRM-VHMLCPSKISPFLHLDFS 332 (520)
T ss_dssp EEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCC-CCCCCCSSCCCCCEEECC
T ss_pred eecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCcc-ccccchhhCCcccEEEeE
Confidence 99876 344444 6788899999988542 1112222222236799999999864 4333 457888888887
Q ss_pred cccCCccccccccccceeecccCcCCceeeeccCccccccccccccHHHHHhcCCCCcEEeecCCCCCChhhhhhhcCCC
Q 004729 528 HCRKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGG 607 (733)
Q Consensus 528 ~c~~l~~l~l~~~~L~~l~l~~c~~L~~L~l~~n~L~~l~~~~~~~L~~l~~~~~~L~~L~Ls~C~~lt~~~~~~~~~~~ 607 (733)
++. ++..... .+..+++|+.|++.+|.++.+. .+......+++|+.|++++ +.++...... ...
T Consensus 333 ~n~-l~~~~~~-------~~~~l~~L~~L~L~~N~l~~l~-----~~~~~~~~l~~L~~L~Ls~-N~l~~~l~~~--~~~ 396 (520)
T 2z7x_B 333 NNL-LTDTVFE-------NCGHLTELETLILQMNQLKELS-----KIAEMTTQMKSLQQLDISQ-NSVSYDEKKG--DCS 396 (520)
T ss_dssp SSC-CCTTTTT-------TCCCCSSCCEEECCSSCCCBHH-----HHHHHHTTCTTCCEEECCS-SCCBCCGGGC--SCC
T ss_pred CCc-cChhhhh-------hhccCCCCCEEEccCCccCccc-----cchHHHhhCCCCCEEECCC-CcCCcccccc--hhc
Confidence 763 3321111 2577889999999999887541 2333455788999999998 4666522221 135
Q ss_pred CCCCccEEEeecCCCCccccccC-CCccEEecccccccccccc---ccccccEEeccccccccccc---cc-ccCCcEEE
Q 004729 608 GCPMLKSLVLDNCEGLTVVRFCS-TSLVSLSLVGCRAITALEL---KCPILEKVCLDGCDHIESAS---FV-PVALQSLN 679 (733)
Q Consensus 608 ~l~~L~~L~L~~c~~L~~~~~~~-~sL~~L~L~~c~~L~~l~~---~~p~L~~L~L~~c~~L~~~~---~~-~~~L~~L~ 679 (733)
.+++|+.|++++|.-...++... ++|+.|++++| .++.++. .+++|++|+++++ .++.+. +. ..+|++|+
T Consensus 397 ~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~ 474 (520)
T 2z7x_B 397 WTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSN-KIKSIPKQVVKLEALQELNVASN-QLKSVPDGIFDRLTSLQKIW 474 (520)
T ss_dssp CCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEE
T ss_pred cCccCCEEECcCCCCCcchhhhhcccCCEEECCCC-cccccchhhhcCCCCCEEECCCC-cCCccCHHHhccCCcccEEE
Confidence 67899999998885333343333 68899998885 4665542 6788888888884 444432 11 23566666
Q ss_pred ecCCC
Q 004729 680 LGICP 684 (733)
Q Consensus 680 L~~c~ 684 (733)
+++++
T Consensus 475 l~~N~ 479 (520)
T 2z7x_B 475 LHTNP 479 (520)
T ss_dssp CCSSC
T ss_pred CcCCC
Confidence 66654
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=99.87 E-value=5.3e-22 Score=220.79 Aligned_cols=141 Identities=13% Similarity=0.071 Sum_probs=58.6
Q ss_pred CCccEEEEcCCCchhHHHHHHhhcCCCCCEEEecCccCChHHHHhccCCCC-------------CcEEEEecCcCCcccc
Q 004729 287 PNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSM-------------LKSLNVNDATLGNGVQ 353 (733)
Q Consensus 287 ~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~i~~~~~~~L~~~~~-------------L~~L~L~~~~l~~~~~ 353 (733)
..++.|.+++ ..+ ..++..++.+++|++|++++|.+....+..++.+.+ |++|+++++.+.. ++
T Consensus 11 ~~L~~L~l~~-n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp 87 (454)
T 1jl5_A 11 TFLQEPLRHS-SNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LP 87 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CC
T ss_pred ccchhhhccc-Cch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CC
Confidence 3455555555 233 334445666666666666665554444444444443 3556665555432 11
Q ss_pred cccccCCCccEEEeeccccchhcccCCCCcEEEEcCCchHHHhhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEec
Q 004729 354 EIPINHDQLRRLEITKCRVMRVSIRCPQLEHLSLKRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDM 433 (733)
Q Consensus 354 ~~~~~~~~L~~L~L~~~~~~~i~~~~~~L~~L~L~~~~l~~~~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L 433 (733)
...++|++|++++|.+..++..+++|+.|++++|.+..+....++|++|+++++ .+.. ++ .+..+++|++|++
T Consensus 88 ---~~~~~L~~L~l~~n~l~~lp~~~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n-~l~~--lp-~~~~l~~L~~L~l 160 (454)
T 1jl5_A 88 ---ELPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNN-QLEK--LP-ELQNSSFLKIIDV 160 (454)
T ss_dssp ---SCCTTCSEEECCSSCCSSCCCCCTTCCEEECCSSCCSCCCSCCTTCCEEECCSS-CCSS--CC-CCTTCTTCCEEEC
T ss_pred ---CCcCCCCEEEccCCcCCccccccCCCcEEECCCCccCcccCCCCCCCEEECcCC-CCCC--Cc-ccCCCCCCCEEEC
Confidence 123556666666655555554455556666555554433222245555555553 2332 11 1344555555555
Q ss_pred cCCC
Q 004729 434 SNCS 437 (733)
Q Consensus 434 ~~~~ 437 (733)
+++.
T Consensus 161 ~~N~ 164 (454)
T 1jl5_A 161 DNNS 164 (454)
T ss_dssp CSSC
T ss_pred CCCc
Confidence 5543
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.86 E-value=6.2e-21 Score=226.18 Aligned_cols=392 Identities=14% Similarity=0.133 Sum_probs=265.2
Q ss_pred CCCCEEEecCccCChHHHHhccCCCCCcEEEE-ecCcCCccccccc----------------------------------
Q 004729 312 RNLEALTLGRGQLGDAFFHALADCSMLKSLNV-NDATLGNGVQEIP---------------------------------- 356 (733)
Q Consensus 312 ~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L-~~~~l~~~~~~~~---------------------------------- 356 (733)
.+++.|+|+++.+...++..++++++|++|+| ++|.+....+...
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 47899999999998888899999999999999 7765332200000
Q ss_pred -----------------ccCCCccEEEeec--cccchh---cccCCCCcEEEEcCCchHH------------------H-
Q 004729 357 -----------------INHDQLRRLEITK--CRVMRV---SIRCPQLEHLSLKRSNMAQ------------------A- 395 (733)
Q Consensus 357 -----------------~~~~~L~~L~L~~--~~~~~i---~~~~~~L~~L~L~~~~l~~------------------~- 395 (733)
.....++.+.+.. |.+..+ ...+++|+.|+|++|.+.. +
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP 482 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYEN 482 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTT
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCC
Confidence 0111122221111 222223 3578999999999987765 2
Q ss_pred ----hhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCCCCCChhHHHHHHHhcc-------cccccccccCCC
Q 004729 396 ----VLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCA-------NLRILNSSYCPN 464 (733)
Q Consensus 396 ----~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~-------~L~~L~L~~~~~ 464 (733)
+..+++|++|++++|..... ++..+..+++|+.|+++++..++...++.-+..++ +|+.|+++++..
T Consensus 483 ~~l~f~~L~~L~~L~Ls~N~l~~~--iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L 560 (876)
T 4ecn_A 483 EELSWSNLKDLTDVELYNCPNMTQ--LPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL 560 (876)
T ss_dssp SCCCGGGCTTCCEEEEESCTTCCS--CCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCC
T ss_pred hhhhhccCCCCCEEECcCCCCCcc--ChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcC
Confidence 23789999999999753332 33556789999999999986566523333333444 999999999874
Q ss_pred C--Cc--CCCCCCCccEEEeCCCCCCchHHHHHhhCCCCcCEEEEecCCCCcccccC---CCC-CcEEEeccccCCcccc
Q 004729 465 I--SL--ESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLE---LPR-LQNIRLVHCRKFADLN 536 (733)
Q Consensus 465 l--~~--~~~~l~~L~~L~L~~c~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~---l~~-L~~L~L~~c~~l~~l~ 536 (733)
. +. ....+++|+.|+++++ .+.... .++.+++|+.|++++|.. ..+|.. +++ |+.|.+.++. ++.+.
T Consensus 561 ~~ip~~~~l~~L~~L~~L~Ls~N-~l~~lp--~~~~L~~L~~L~Ls~N~l-~~lp~~l~~l~~~L~~L~Ls~N~-L~~lp 635 (876)
T 4ecn_A 561 EEFPASASLQKMVKLGLLDCVHN-KVRHLE--AFGTNVKLTDLKLDYNQI-EEIPEDFCAFTDQVEGLGFSHNK-LKYIP 635 (876)
T ss_dssp CBCCCHHHHTTCTTCCEEECTTS-CCCBCC--CCCTTSEESEEECCSSCC-SCCCTTSCEECTTCCEEECCSSC-CCSCC
T ss_pred CccCChhhhhcCCCCCEEECCCC-Ccccch--hhcCCCcceEEECcCCcc-ccchHHHhhccccCCEEECcCCC-CCcCc
Confidence 3 33 3458999999999995 466333 778899999999999864 466643 466 8899888764 33221
Q ss_pred ccccccceeecccCcCCceeeeccCccccccccccccHHHHHhcCCCCcEEeecCCCCCChhhhhhhcCCCCCCCccEEE
Q 004729 537 LRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLV 616 (733)
Q Consensus 537 l~~~~L~~l~l~~c~~L~~L~l~~n~L~~l~~~~~~~L~~l~~~~~~L~~L~Ls~C~~lt~~~~~~~~~~~~l~~L~~L~ 616 (733)
. .+.....++|+.|++++|.+......-...+. ...+++|+.|++++| .++......+ ..+++|+.|+
T Consensus 636 --~----~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~--~~~~~~L~~L~Ls~N-~L~~lp~~~~---~~l~~L~~L~ 703 (876)
T 4ecn_A 636 --N----IFNAKSVYVMGSVDFSYNKIGSEGRNISCSMD--DYKGINASTVTLSYN-EIQKFPTELF---ATGSPISTII 703 (876)
T ss_dssp --S----CCCTTCSSCEEEEECCSSCTTTTSSSCSSCTT--TCCCCCEEEEECCSS-CCCSCCHHHH---HTTCCCSEEE
T ss_pred --h----hhhccccCCCCEEECcCCcCCCccccchhhhc--cccCCCcCEEEccCC-cCCccCHHHH---ccCCCCCEEE
Confidence 1 11122334599999999998764211110111 013569999999995 7764433333 3689999999
Q ss_pred eecCCCCcccccc-----------CCCccEEecccccccccccc-----ccccccEEeccccccccccc---ccccCCcE
Q 004729 617 LDNCEGLTVVRFC-----------STSLVSLSLVGCRAITALEL-----KCPILEKVCLDGCDHIESAS---FVPVALQS 677 (733)
Q Consensus 617 L~~c~~L~~~~~~-----------~~sL~~L~L~~c~~L~~l~~-----~~p~L~~L~L~~c~~L~~~~---~~~~~L~~ 677 (733)
|++| .++.++.. +++|+.|+|++| .|+.++. .+++|+.|+|+++ .++.+. ....+|+.
T Consensus 704 Ls~N-~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N-~L~~lp~~l~~~~l~~L~~L~Ls~N-~L~~lp~~l~~L~~L~~ 780 (876)
T 4ecn_A 704 LSNN-LMTSIPENSLKPKDGNYKNTYLLTTIDLRFN-KLTSLSDDFRATTLPYLSNMDVSYN-CFSSFPTQPLNSSQLKA 780 (876)
T ss_dssp CCSC-CCSCCCTTSSSCTTSCCTTGGGCCEEECCSS-CCCCCCGGGSTTTCTTCCEEECCSS-CCSSCCCGGGGCTTCCE
T ss_pred CCCC-cCCccChHHhccccccccccCCccEEECCCC-CCccchHHhhhccCCCcCEEEeCCC-CCCccchhhhcCCCCCE
Confidence 9997 56666541 128999999996 5666652 6799999999994 444422 23458999
Q ss_pred EEecCCC------Ccccccc---CcccccEEEecCCCCCCccCC-CCCCccEEeccCcc
Q 004729 678 LNLGICP------KLSTLGI---EALHMVVLELKGCGVLSDAYI-NCPLLTSLDASFCR 726 (733)
Q Consensus 678 L~L~~c~------~L~~l~~---~~~~L~~L~l~~c~~L~~~~~-~~p~L~~L~l~~C~ 726 (733)
|+|++++ -...+|. ...+|+.|+|++|.. ..+.. -+++|+.|++++|+
T Consensus 781 L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~~~L~~LdLs~N~ 838 (876)
T 4ecn_A 781 FGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLTPQLYILDIADNP 838 (876)
T ss_dssp EECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCCSSSCEEECCSCT
T ss_pred EECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhcCCCCEEECCCCC
Confidence 9998743 2233332 124699999999876 65555 34799999999997
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=99.85 E-value=5.6e-21 Score=221.85 Aligned_cols=331 Identities=14% Similarity=0.171 Sum_probs=228.1
Q ss_pred cccCCCCcEEEEcCCchHH------------------H---hh--CCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEe
Q 004729 376 SIRCPQLEHLSLKRSNMAQ------------------A---VL--NCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLD 432 (733)
Q Consensus 376 ~~~~~~L~~L~L~~~~l~~------------------~---~~--~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~ 432 (733)
...+++|+.|+|+++.+.. + +. .+++|++|++++|..... ++..+.++++|+.|+
T Consensus 202 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~--~p~~l~~l~~L~~L~ 279 (636)
T 4eco_A 202 VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTK--LPTFLKALPEMQLIN 279 (636)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSS--CCTTTTTCSSCCEEE
T ss_pred HhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCcc--ChHHHhcCCCCCEEE
Confidence 4578999999999987665 2 34 789999999999753332 334567889999999
Q ss_pred ccCCCCCChhHHHHHHHh------cccccccccccCCCC--Cc--CCCCCCCccEEEeCCCCCCchHHHHHhhCCCCcCE
Q 004729 433 MSNCSCVSDESLREIALS------CANLRILNSSYCPNI--SL--ESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEV 502 (733)
Q Consensus 433 L~~~~~l~~~~l~~l~~~------~~~L~~L~L~~~~~l--~~--~~~~l~~L~~L~L~~c~~l~~~~~~~l~~~~~L~~ 502 (733)
++++..++...++.-... +++|++|+++++... +. ....+++|++|+++++ .+..... .++.+++|++
T Consensus 280 Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N-~l~g~ip-~~~~l~~L~~ 357 (636)
T 4eco_A 280 VACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYN-QLEGKLP-AFGSEIKLAS 357 (636)
T ss_dssp CTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSC-CCEEECC-CCEEEEEESE
T ss_pred CcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCC-cCccchh-hhCCCCCCCE
Confidence 999875665233333334 399999999988733 33 3458899999999995 4652222 6778899999
Q ss_pred EEEecCCCCcccccC---CCC-CcEEEeccccCCccccccccccceeecccCcCCceeeeccCccccccccccccHHHHH
Q 004729 503 LELDNCNLLTSVSLE---LPR-LQNIRLVHCRKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLA 578 (733)
Q Consensus 503 L~L~~~~~l~~~~~~---l~~-L~~L~L~~c~~l~~l~l~~~~L~~l~l~~c~~L~~L~l~~n~L~~l~~~~~~~L~~l~ 578 (733)
|++++|. +..+|.. +++ |+.|.+.++. ++.+. . .+....+++|+.|++++|.+....+........-.
T Consensus 358 L~L~~N~-l~~lp~~l~~l~~~L~~L~Ls~N~-l~~lp--~----~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~ 429 (636)
T 4eco_A 358 LNLAYNQ-ITEIPANFCGFTEQVENLSFAHNK-LKYIP--N----IFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTP 429 (636)
T ss_dssp EECCSSE-EEECCTTSEEECTTCCEEECCSSC-CSSCC--S----CCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSC
T ss_pred EECCCCc-cccccHhhhhhcccCcEEEccCCc-Ccccc--h----hhhhcccCccCEEECcCCcCCCcchhhhccccccc
Confidence 9999984 4566654 466 8888887764 33221 1 11122345899999999999775432221000001
Q ss_pred hcCCCCcEEeecCCCCCChhhhhhhcCCCCCCCccEEEeecCCCCcccccc----C-------CCccEEecccccccccc
Q 004729 579 LQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRFC----S-------TSLVSLSLVGCRAITAL 647 (733)
Q Consensus 579 ~~~~~L~~L~Ls~C~~lt~~~~~~~~~~~~l~~L~~L~L~~c~~L~~~~~~----~-------~sL~~L~L~~c~~L~~l 647 (733)
..+++|+.|++++| .++......+ ..+++|+.|+|+++ .++.++.. . ++|+.|+++++ .++.+
T Consensus 430 ~~~~~L~~L~Ls~N-~l~~lp~~~~---~~l~~L~~L~Ls~N-~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~l 503 (636)
T 4eco_A 430 FKGINVSSINLSNN-QISKFPKELF---STGSPLSSINLMGN-MLTEIPKNSLKDENENFKNTYLLTSIDLRFN-KLTKL 503 (636)
T ss_dssp CCCCCEEEEECCSS-CCCSCCTHHH---HTTCCCSEEECCSS-CCSBCCSSSSEETTEECTTGGGCCEEECCSS-CCCBC
T ss_pred ccCCCCCEEECcCC-ccCcCCHHHH---ccCCCCCEEECCCC-CCCCcCHHHhccccccccccCCccEEECcCC-cCCcc
Confidence 14569999999994 7774433333 35899999999997 46666541 1 28999999995 46665
Q ss_pred cc-----ccccccEEeccccccccccc---ccccCCcEEEecCCC------CccccccC---cccccEEEecCCCCCCcc
Q 004729 648 EL-----KCPILEKVCLDGCDHIESAS---FVPVALQSLNLGICP------KLSTLGIE---ALHMVVLELKGCGVLSDA 710 (733)
Q Consensus 648 ~~-----~~p~L~~L~L~~c~~L~~~~---~~~~~L~~L~L~~c~------~L~~l~~~---~~~L~~L~l~~c~~L~~~ 710 (733)
+. .+++|++|+|+++ .++.+. ....+|++|++++++ -...+|.. ..+|++|++++|.. +.+
T Consensus 504 p~~~~~~~l~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~i 581 (636)
T 4eco_A 504 SDDFRATTLPYLVGIDLSYN-SFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKV 581 (636)
T ss_dssp CGGGSTTTCTTCCEEECCSS-CCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBC
T ss_pred ChhhhhccCCCcCEEECCCC-CCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-Ccc
Confidence 52 6799999999994 444421 234689999996543 23334322 23699999999887 555
Q ss_pred CC-CCCCccEEeccCcc
Q 004729 711 YI-NCPLLTSLDASFCR 726 (733)
Q Consensus 711 ~~-~~p~L~~L~l~~C~ 726 (733)
.. -+++|+.|++++|+
T Consensus 582 p~~~~~~L~~L~Ls~N~ 598 (636)
T 4eco_A 582 NEKITPNISVLDIKDNP 598 (636)
T ss_dssp CSCCCTTCCEEECCSCT
T ss_pred CHhHhCcCCEEECcCCC
Confidence 54 34899999999996
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=99.85 E-value=7e-20 Score=204.74 Aligned_cols=330 Identities=19% Similarity=0.207 Sum_probs=212.0
Q ss_pred CCccEEEEcCCCchhHHHHHHhhcCCCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEE
Q 004729 287 PNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLE 366 (733)
Q Consensus 287 ~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~ 366 (733)
++++.|++.++. +... +.+..+++|++|++++|.+....+ +..+++|++|+++++.+....+ ...+++|++|+
T Consensus 46 ~~l~~L~l~~~~-i~~l--~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~ 118 (466)
T 1o6v_A 46 DQVTTLQADRLG-IKSI--DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLT 118 (466)
T ss_dssp HTCCEEECCSSC-CCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEE
T ss_pred ccccEEecCCCC-CccC--cchhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEE
Confidence 467777776643 2221 235678888888888887775433 7788888888888887765443 56788888888
Q ss_pred eeccccchhc--ccCCCCcEEEEcCCchHH--HhhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCCCCCChh
Q 004729 367 ITKCRVMRVS--IRCPQLEHLSLKRSNMAQ--AVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDE 442 (733)
Q Consensus 367 L~~~~~~~i~--~~~~~L~~L~L~~~~l~~--~~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~ 442 (733)
+++|.+..+. ..+++|+.|+++++.+.. .+..+++|++|.+.+. +.... .+..+++|+.|+++++. ++..
T Consensus 119 L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~--~~~~~---~~~~l~~L~~L~l~~n~-l~~~ 192 (466)
T 1o6v_A 119 LFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQ--VTDLK---PLANLTTLERLDISSNK-VSDI 192 (466)
T ss_dssp CCSSCCCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEES--CCCCG---GGTTCTTCCEEECCSSC-CCCC
T ss_pred CCCCCCCCChHHcCCCCCCEEECCCCccCCChhhccCCcccEeecCCc--ccCch---hhccCCCCCEEECcCCc-CCCC
Confidence 8888765443 567888888888765543 2567888888888753 22211 15677888888888876 4432
Q ss_pred HHHHHHHhcccccccccccCCCCCc-CCCCCCCccEEEeCCCCCCchHHHHHhhCCCCcCEEEEecCCCCccccc-CCCC
Q 004729 443 SLREIALSCANLRILNSSYCPNISL-ESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSL-ELPR 520 (733)
Q Consensus 443 ~l~~l~~~~~~L~~L~L~~~~~l~~-~~~~l~~L~~L~L~~c~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~-~l~~ 520 (733)
. . ...+++|++|+++++..... ....+++|++|+++++. +.+. ..+..+++|++|++++|......+. .+++
T Consensus 193 ~--~-l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~-l~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~ 266 (466)
T 1o6v_A 193 S--V-LAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQ-LKDI--GTLASLTNLTDLDLANNQISNLAPLSGLTK 266 (466)
T ss_dssp G--G-GGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSC-CCCC--GGGGGCTTCSEEECCSSCCCCCGGGTTCTT
T ss_pred h--h-hccCCCCCEEEecCCcccccccccccCCCCEEECCCCC-cccc--hhhhcCCCCCEEECCCCccccchhhhcCCC
Confidence 1 1 33677888888887763222 23357788888888743 4443 3466778888888888753322221 2566
Q ss_pred CcEEEeccccCCccccccccccceeecccCcCCceeeeccCccccccccccccHHHHHhcCCCCcEEeecCCCCCChhhh
Q 004729 521 LQNIRLVHCRKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVC 600 (733)
Q Consensus 521 L~~L~L~~c~~l~~l~l~~~~L~~l~l~~c~~L~~L~l~~n~L~~l~~~~~~~L~~l~~~~~~L~~L~Ls~C~~lt~~~~ 600 (733)
|+.|.+.++. ++.+. .+..+++|+.|++.+|.++.+.. ...+++|+.|++++| .+++...
T Consensus 267 L~~L~l~~n~-l~~~~---------~~~~l~~L~~L~L~~n~l~~~~~---------~~~l~~L~~L~L~~n-~l~~~~~ 326 (466)
T 1o6v_A 267 LTELKLGANQ-ISNIS---------PLAGLTALTNLELNENQLEDISP---------ISNLKNLTYLTLYFN-NISDISP 326 (466)
T ss_dssp CSEEECCSSC-CCCCG---------GGTTCTTCSEEECCSSCCSCCGG---------GGGCTTCSEEECCSS-CCSCCGG
T ss_pred CCEEECCCCc-cCccc---------cccCCCccCeEEcCCCcccCchh---------hcCCCCCCEEECcCC-cCCCchh
Confidence 7777666542 22211 15667788888888887765432 236678888888875 5554432
Q ss_pred hhhcCCCCCCCccEEEeecCCCCccccc--cCCCccEEeccccccccccc--cccccccEEecccc
Q 004729 601 EVFSDGGGCPMLKSLVLDNCEGLTVVRF--CSTSLVSLSLVGCRAITALE--LKCPILEKVCLDGC 662 (733)
Q Consensus 601 ~~~~~~~~l~~L~~L~L~~c~~L~~~~~--~~~sL~~L~L~~c~~L~~l~--~~~p~L~~L~L~~c 662 (733)
...+++|+.|++++| .++.++. .+++|+.|++++|. +..+. ..+++|++|++++|
T Consensus 327 -----~~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~n 385 (466)
T 1o6v_A 327 -----VSSLTKLQRLFFYNN-KVSDVSSLANLTNINWLSAGHNQ-ISDLTPLANLTRITQLGLNDQ 385 (466)
T ss_dssp -----GGGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSC-CCBCGGGTTCTTCCEEECCCE
T ss_pred -----hccCccCCEeECCCC-ccCCchhhccCCCCCEEeCCCCc-cCccchhhcCCCCCEEeccCC
Confidence 245778888888777 3544432 56777777777753 33322 35677777777774
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.84 E-value=4.5e-20 Score=205.76 Aligned_cols=243 Identities=19% Similarity=0.229 Sum_probs=159.5
Q ss_pred CeeEEeeCCCCCCHHHHHHHHhhCCCccEEEEcCCCchhH----HHHHHhhcCCCCCEEEecCccCChHHHHhcc-CCC-
Q 004729 263 FWRCLNFENRKISVEQFEDVCQRYPNATEVNIYGAPAIHL----LVMKAVSLLRNLEALTLGRGQLGDAFFHALA-DCS- 336 (733)
Q Consensus 263 lw~~l~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~----~~~~~l~~l~~L~~L~Ls~~~i~~~~~~~L~-~~~- 336 (733)
-.+.+++....+....+..++..+++++.|+++++. +.. .....+..+++|++|+|++|.+.+..+..+. .++
T Consensus 4 ~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 4 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred cceehhhhhcccCchhHHHHHhhcCCccEEEccCCC-CCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 356778877778887777878888899999998865 332 2345566788999999998888776554443 344
Q ss_pred ---CCcEEEEecCcCCc----ccccccccCCCccEEEeeccccchh---------cccCCCCcEEEEcCCchH-------
Q 004729 337 ---MLKSLNVNDATLGN----GVQEIPINHDQLRRLEITKCRVMRV---------SIRCPQLEHLSLKRSNMA------- 393 (733)
Q Consensus 337 ---~L~~L~L~~~~l~~----~~~~~~~~~~~L~~L~L~~~~~~~i---------~~~~~~L~~L~L~~~~l~------- 393 (733)
+|++|++++|.+.+ .++.....+++|++|++++|.+... ....++|++|+++++.+.
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 162 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence 69999999888774 3455567788888888888876421 123456888888776543
Q ss_pred -HHhhCCCCccEEEEecCCCCChHHHHHHHh----cCCCCcEEeccCCCCCChhH---HHHHHHhcccccccccccCCCC
Q 004729 394 -QAVLNCPLLHLLDIASCHKLSDAAIRLAAT----SCPQLESLDMSNCSCVSDES---LREIALSCANLRILNSSYCPNI 465 (733)
Q Consensus 394 -~~~~~~~~L~~L~L~~c~~l~~~~l~~l~~----~~~~L~~L~L~~~~~l~~~~---l~~l~~~~~~L~~L~L~~~~~l 465 (733)
..+..+++|++|+++++ .+.+..+..+.. ..++|++|++++|. +++.+ +......+++|++|+++++..-
T Consensus 163 ~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 240 (461)
T 1z7x_W 163 ASVLRAKPDFKELTVSNN-DINEAGVRVLCQGLKDSPCQLEALKLESCG-VTSDNCRDLCGIVASKASLRELALGSNKLG 240 (461)
T ss_dssp HHHHHHCTTCCEEECCSS-BCHHHHHHHHHHHHHHSCCCCCEEECTTSC-CBTTHHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred HHHHhhCCCCCEEECcCC-CcchHHHHHHHHHHhcCCCCceEEEccCCC-CcHHHHHHHHHHHHhCCCccEEeccCCcCC
Confidence 33456778888888775 366555444333 34578888887776 65554 3333446677777777776411
Q ss_pred Cc--------CCCCCCCccEEEeCCCCCCchHHH----HHhhCCCCcCEEEEecCC
Q 004729 466 SL--------ESVRLPMLTVLQLHSCEGITSASM----AAISHSYMLEVLELDNCN 509 (733)
Q Consensus 466 ~~--------~~~~l~~L~~L~L~~c~~l~~~~~----~~l~~~~~L~~L~L~~~~ 509 (733)
.. ....+++|++|++++| .+++.+. ..+..+++|++|++++|.
T Consensus 241 ~~~~~~l~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 295 (461)
T 1z7x_W 241 DVGMAELCPGLLHPSSRLRTLWIWEC-GITAKGCGDLCRVLRAKESLKELSLAGNE 295 (461)
T ss_dssp HHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCTTCCEEECTTCC
T ss_pred hHHHHHHHHHHhcCCCCceEEECcCC-CCCHHHHHHHHHHHhhCCCcceEECCCCC
Confidence 10 0114667777777775 4666542 334446777777777764
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=2.1e-20 Score=208.14 Aligned_cols=196 Identities=14% Similarity=0.118 Sum_probs=130.5
Q ss_pred CCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCccc-ccccccCCCccEEEeeccccchh----cccCCCCcEEE
Q 004729 312 RNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGV-QEIPINHDQLRRLEITKCRVMRV----SIRCPQLEHLS 386 (733)
Q Consensus 312 ~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~-~~~~~~~~~L~~L~L~~~~~~~i----~~~~~~L~~L~ 386 (733)
++|++|+|++|.++...+..+..+++|++|+++++.+...+ +..+..+++|++|++++|.+..+ ...+++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 57888888888887666667778888888888888765333 34456778888888888876543 34577888888
Q ss_pred EcCCchHH------HhhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCCCCCChhHHHHHHH-hccccccccc
Q 004729 387 LKRSNMAQ------AVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIAL-SCANLRILNS 459 (733)
Q Consensus 387 L~~~~l~~------~~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~-~~~~L~~L~L 459 (733)
++++.+.. .+..+++|++|+++++ .+.......++..+++|+.|+++++. ++......+.. ...+|+.|++
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~~~L~~L~l 187 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDN-NIKKIQPASFFLNMRRFHVLDLTFNK-VKSICEEDLLNFQGKHFTLLRL 187 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSS-BCCSCCCCGGGGGCTTCCEEECTTCC-BSCCCTTTSGGGTTCEEEEEEC
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCC-ccCccCcccccCCCCcccEEeCCCCc-ccccChhhhhcccccccccccc
Confidence 88876642 1556788888888885 34433222335678889999988876 33221111110 1257888888
Q ss_pred ccCCCCCcC-----------CCCCCCccEEEeCCCCCCchHHHHHhhC---CCCcCEEEEecCCC
Q 004729 460 SYCPNISLE-----------SVRLPMLTVLQLHSCEGITSASMAAISH---SYMLEVLELDNCNL 510 (733)
Q Consensus 460 ~~~~~l~~~-----------~~~l~~L~~L~L~~c~~l~~~~~~~l~~---~~~L~~L~L~~~~~ 510 (733)
+++...... ...+++|++|+++++ .+.......+.. .++|+.|++++|..
T Consensus 188 ~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~~~~~~~~~~L~~L~l~~~~~ 251 (455)
T 3v47_A 188 SSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGN-GFKESMAKRFFDAIAGTKIQSLILSNSYN 251 (455)
T ss_dssp TTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTS-CCCHHHHHHHHHHTTTCCEEEEECTTCTT
T ss_pred ccCcccccchhhccccccccccccceeeeEecCCC-cccccchhhhhccccccceeeEeeccccc
Confidence 776633221 224578999999984 566655555543 47889999888754
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.4e-19 Score=193.97 Aligned_cols=278 Identities=22% Similarity=0.285 Sum_probs=135.9
Q ss_pred hCCCccEEEEcCCCchhHHHHHHhhcCCCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccE
Q 004729 285 RYPNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRR 364 (733)
Q Consensus 285 ~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~ 364 (733)
.+++++.|++.++. +... ..+..+++|++|++++|.+.+... +..+++|++|++++|.+... + ....+++|++
T Consensus 42 ~l~~L~~L~l~~~~-i~~~--~~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~-~-~~~~l~~L~~ 114 (347)
T 4fmz_A 42 ELESITKLVVAGEK-VASI--QGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI-S-ALQNLTNLRE 114 (347)
T ss_dssp HHTTCSEEECCSSC-CCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-G-GGTTCTTCSE
T ss_pred hcccccEEEEeCCc-cccc--hhhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCc-h-HHcCCCcCCE
Confidence 34567777776633 2221 235566677777777666654322 56666777777766655432 2 2345556666
Q ss_pred EEeeccccchhcccCCCCcEEEEcCCchHHHhhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCCCCCChhHH
Q 004729 365 LEITKCRVMRVSIRCPQLEHLSLKRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESL 444 (733)
Q Consensus 365 L~L~~~~~~~i~~~~~~L~~L~L~~~~l~~~~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~l 444 (733)
|++++|.+..+. . +..+++|++|++++|..+.... .+..+++|+.|+++++. +.....
T Consensus 115 L~l~~n~i~~~~-----------------~-~~~l~~L~~L~l~~n~~~~~~~---~~~~l~~L~~L~l~~~~-~~~~~~ 172 (347)
T 4fmz_A 115 LYLNEDNISDIS-----------------P-LANLTKMYSLNLGANHNLSDLS---PLSNMTGLNYLTVTESK-VKDVTP 172 (347)
T ss_dssp EECTTSCCCCCG-----------------G-GTTCTTCCEEECTTCTTCCCCG---GGTTCTTCCEEECCSSC-CCCCGG
T ss_pred EECcCCcccCch-----------------h-hccCCceeEEECCCCCCccccc---chhhCCCCcEEEecCCC-cCCchh
Confidence 666555443221 1 3445555555555543333221 13455556666665554 222111
Q ss_pred HHHHHhcccccccccccCCCCCcC-CCCCCCccEEEeCCCCCCchHHHHHhhCCCCcCEEEEecCCCCccccc--CCCCC
Q 004729 445 REIALSCANLRILNSSYCPNISLE-SVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSL--ELPRL 521 (733)
Q Consensus 445 ~~l~~~~~~L~~L~L~~~~~l~~~-~~~l~~L~~L~L~~c~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~--~l~~L 521 (733)
...+++|++|++++|...... ...+++|+.|++.++ .+.+... +..+++|++|++++|. ++.++. .+++|
T Consensus 173 ---~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n-~l~~~~~--~~~~~~L~~L~l~~n~-l~~~~~~~~l~~L 245 (347)
T 4fmz_A 173 ---IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVN-QITDITP--VANMTRLNSLKIGNNK-ITDLSPLANLSQL 245 (347)
T ss_dssp ---GGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSS-CCCCCGG--GGGCTTCCEEECCSSC-CCCCGGGTTCTTC
T ss_pred ---hccCCCCCEEEccCCcccccccccCCCccceeecccC-CCCCCch--hhcCCcCCEEEccCCc-cCCCcchhcCCCC
Confidence 224455555555554321111 224555666666553 2332221 4555666666666553 222221 23445
Q ss_pred cEEEeccccCCccccccccccceeecccCcCCceeeeccCccccccccccccHHHHHhcCCCCcEEeecCCCCCChhhhh
Q 004729 522 QNIRLVHCRKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCE 601 (733)
Q Consensus 522 ~~L~L~~c~~l~~l~l~~~~L~~l~l~~c~~L~~L~l~~n~L~~l~~~~~~~L~~l~~~~~~L~~L~Ls~C~~lt~~~~~ 601 (733)
+.|++.++ .++.+. .+..+++|+.|++++|.++.+. ....+++|+.|++++| .+++....
T Consensus 246 ~~L~l~~n-~l~~~~---------~~~~l~~L~~L~l~~n~l~~~~---------~~~~l~~L~~L~L~~n-~l~~~~~~ 305 (347)
T 4fmz_A 246 TWLEIGTN-QISDIN---------AVKDLTKLKMLNVGSNQISDIS---------VLNNLSQLNSLFLNNN-QLGNEDME 305 (347)
T ss_dssp CEEECCSS-CCCCCG---------GGTTCTTCCEEECCSSCCCCCG---------GGGGCTTCSEEECCSS-CCCGGGHH
T ss_pred CEEECCCC-ccCCCh---------hHhcCCCcCEEEccCCccCCCh---------hhcCCCCCCEEECcCC-cCCCcChh
Confidence 55544443 122211 1445566666666666555431 1224556666666664 45544444
Q ss_pred hhcCCCCCCCccEEEeecCC
Q 004729 602 VFSDGGGCPMLKSLVLDNCE 621 (733)
Q Consensus 602 ~~~~~~~l~~L~~L~L~~c~ 621 (733)
.+ +.+++|+.|++++|+
T Consensus 306 ~l---~~l~~L~~L~L~~n~ 322 (347)
T 4fmz_A 306 VI---GGLTNLTTLFLSQNH 322 (347)
T ss_dssp HH---HTCTTCSEEECCSSS
T ss_pred Hh---hccccCCEEEccCCc
Confidence 44 345666666666653
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.8e-20 Score=208.68 Aligned_cols=275 Identities=21% Similarity=0.252 Sum_probs=124.1
Q ss_pred cCCCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEEeeccccchhc-ccCCCCcEEEEc
Q 004729 310 LLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVS-IRCPQLEHLSLK 388 (733)
Q Consensus 310 ~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~i~-~~~~~L~~L~L~ 388 (733)
.+++|++|+++++.+++. +.+..+++|++|++++|.+... + ...+++|++|++++|.+..++ ..+++|+.|+++
T Consensus 40 ~l~~L~~L~Ls~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~~~~~l~~L~~L~L~ 114 (457)
T 3bz5_A 40 QLATLTSLDCHNSSITDM--TGIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNLDVTPLTKLTYLNCD 114 (457)
T ss_dssp HHTTCCEEECCSSCCCCC--TTGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECC
T ss_pred HcCCCCEEEccCCCcccC--hhhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCceeecCCCCcCCEEECC
Confidence 455666666666666542 2455666666666666665542 1 345566666666665543221 223334444444
Q ss_pred CCchHHH-hhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCCCCCChhHHHHHHHhcccccccccccCCCCCc
Q 004729 389 RSNMAQA-VLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNISL 467 (733)
Q Consensus 389 ~~~l~~~-~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~ 467 (733)
+|.+..+ +..+++|++|+++++ .+.... +..+++|+.|+++++..+...
T Consensus 115 ~N~l~~l~~~~l~~L~~L~l~~N-~l~~l~----l~~l~~L~~L~l~~n~~~~~~------------------------- 164 (457)
T 3bz5_A 115 TNKLTKLDVSQNPLLTYLNCARN-TLTEID----VSHNTQLTELDCHLNKKITKL------------------------- 164 (457)
T ss_dssp SSCCSCCCCTTCTTCCEEECTTS-CCSCCC----CTTCTTCCEEECTTCSCCCCC-------------------------
T ss_pred CCcCCeecCCCCCcCCEEECCCC-ccceec----cccCCcCCEEECCCCCccccc-------------------------
Confidence 3332211 233444555555443 222211 233445555555444322221
Q ss_pred CCCCCCCccEEEeCCCCCCchHHHHHhhCCCCcCEEEEecCCCCccccc-CCCCCcEEEeccccCCccccccccccceee
Q 004729 468 ESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSL-ELPRLQNIRLVHCRKFADLNLRAMMLSSIM 546 (733)
Q Consensus 468 ~~~~l~~L~~L~L~~c~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~-~l~~L~~L~L~~c~~l~~l~l~~~~L~~l~ 546 (733)
....+++|++|+++++ .++... ++.+++|+.|++++|. ++.++. .+++|+.|++.++ .+..+.
T Consensus 165 ~~~~l~~L~~L~ls~n-~l~~l~---l~~l~~L~~L~l~~N~-l~~~~l~~l~~L~~L~Ls~N-----------~l~~ip 228 (457)
T 3bz5_A 165 DVTPQTQLTTLDCSFN-KITELD---VSQNKLLNRLNCDTNN-ITKLDLNQNIQLTFLDCSSN-----------KLTEID 228 (457)
T ss_dssp CCTTCTTCCEEECCSS-CCCCCC---CTTCTTCCEEECCSSC-CSCCCCTTCTTCSEEECCSS-----------CCSCCC
T ss_pred ccccCCcCCEEECCCC-ccceec---cccCCCCCEEECcCCc-CCeeccccCCCCCEEECcCC-----------cccccC
Confidence 1223444555555442 233211 3344455555554442 222211 1233333333222 122222
Q ss_pred cccCcCCceeeeccCccccccccccccHHHHHhcCCCCcEEeecCCCCCChhhhhhhcCCCCCCCccEEEeecCCCCccc
Q 004729 547 VSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVV 626 (733)
Q Consensus 547 l~~c~~L~~L~l~~n~L~~l~~~~~~~L~~l~~~~~~L~~L~Ls~C~~lt~~~~~~~~~~~~l~~L~~L~L~~c~~L~~~ 626 (733)
+..+++|+.|++++|.++.+.+.....+..+.....+|+.|++++|..+.. ++ .+.+++|+.|++++|..+..+
T Consensus 229 ~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~-----~~-~~~l~~L~~L~Ls~n~~l~~l 302 (457)
T 3bz5_A 229 VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIY-----FQ-AEGCRKIKELDVTHNTQLYLL 302 (457)
T ss_dssp CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCE-----EE-CTTCTTCCCCCCTTCTTCCEE
T ss_pred ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCc-----cc-ccccccCCEEECCCCccccee
Confidence 344555555555555555443222222211111223455555555433321 11 245677777777777766666
Q ss_pred cccCCCccEEecccc
Q 004729 627 RFCSTSLVSLSLVGC 641 (733)
Q Consensus 627 ~~~~~sL~~L~L~~c 641 (733)
+....+|+.|++++|
T Consensus 303 ~~~~~~L~~L~l~~~ 317 (457)
T 3bz5_A 303 DCQAAGITELDLSQN 317 (457)
T ss_dssp ECTTCCCSCCCCTTC
T ss_pred ccCCCcceEechhhc
Confidence 655555666655554
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.83 E-value=6.8e-20 Score=204.33 Aligned_cols=322 Identities=20% Similarity=0.260 Sum_probs=189.3
Q ss_pred CCccEEEEcCCCchhHHHHH-HhhcCCCCCEEEecCccCChH----HHHhccCCCCCcEEEEecCcCCcc-cccccccCC
Q 004729 287 PNATEVNIYGAPAIHLLVMK-AVSLLRNLEALTLGRGQLGDA----FFHALADCSMLKSLNVNDATLGNG-VQEIPINHD 360 (733)
Q Consensus 287 ~~L~~L~L~~~~~~~~~~~~-~l~~l~~L~~L~Ls~~~i~~~----~~~~L~~~~~L~~L~L~~~~l~~~-~~~~~~~~~ 360 (733)
++++.|++++.. +....+. .+..+++|++|++++|.+++. ++..+..+++|++|++++|.+.+. ...+...++
T Consensus 3 ~~l~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 3 LDIQSLDIQCEE-LSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp EEEEEEEEESCC-CCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred ccceehhhhhcc-cCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence 468899998754 4444343 477899999999999999864 456677889999999999987653 333444444
Q ss_pred ----CccEEEeeccccch--------hcccCCCCcEEEEcCCchHHH---------hhCCCCccEEEEecCCCCChHH--
Q 004729 361 ----QLRRLEITKCRVMR--------VSIRCPQLEHLSLKRSNMAQA---------VLNCPLLHLLDIASCHKLSDAA-- 417 (733)
Q Consensus 361 ----~L~~L~L~~~~~~~--------i~~~~~~L~~L~L~~~~l~~~---------~~~~~~L~~L~L~~c~~l~~~~-- 417 (733)
+|++|++++|.+.. ....+++|++|+++++.+... ....++|++|++++| .+++..
T Consensus 82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~ 160 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYC-SLSAASCE 160 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCBGGGHH
T ss_pred hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCC-CCCHHHHH
Confidence 79999999998652 225678888888888876521 223567888888886 465543
Q ss_pred -HHHHHhcCCCCcEEeccCCCCCChhHHHHHHHh----cccccccccccCCCCCc-------CCCCCCCccEEEeCCCCC
Q 004729 418 -IRLAATSCPQLESLDMSNCSCVSDESLREIALS----CANLRILNSSYCPNISL-------ESVRLPMLTVLQLHSCEG 485 (733)
Q Consensus 418 -l~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~----~~~L~~L~L~~~~~l~~-------~~~~l~~L~~L~L~~c~~ 485 (733)
+...+..+++|++|+++++. +++..+..+... .++|++|++++|..... ....+++|++|+++++ .
T Consensus 161 ~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~ 238 (461)
T 1z7x_W 161 PLASVLRAKPDFKELTVSNND-INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSN-K 238 (461)
T ss_dssp HHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSS-B
T ss_pred HHHHHHhhCCCCCEEECcCCC-cchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCC-c
Confidence 44556678888888888887 777666666543 34777777777642211 1114677777777774 4
Q ss_pred CchHHHHHhh-----CCCCcCEEEEecCCCCcc-----ccc---CCCCCcEEEeccccCCccccccccccceeecccCcC
Q 004729 486 ITSASMAAIS-----HSYMLEVLELDNCNLLTS-----VSL---ELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAA 552 (733)
Q Consensus 486 l~~~~~~~l~-----~~~~L~~L~L~~~~~l~~-----~~~---~l~~L~~L~L~~c~~l~~l~l~~~~L~~l~l~~c~~ 552 (733)
+++.....+. .+++|++|++++|. ++. ++. .+++|+.|++.++ .+++.+... +........++
T Consensus 239 l~~~~~~~l~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~--l~~~l~~~~~~ 314 (461)
T 1z7x_W 239 LGDVGMAELCPGLLHPSSRLRTLWIWECG-ITAKGCGDLCRVLRAKESLKELSLAGN-ELGDEGARL--LCETLLEPGCQ 314 (461)
T ss_dssp CHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHHHHHCTTCCEEECTTC-CCHHHHHHH--HHHHHTSTTCC
T ss_pred CChHHHHHHHHHHhcCCCCceEEECcCCC-CCHHHHHHHHHHHhhCCCcceEECCCC-CCchHHHHH--HHHHhccCCcc
Confidence 6665543332 35677777777763 333 121 1455555555544 222221111 00000112245
Q ss_pred CceeeeccCccccccccccccHHHHHhcCCCCcEEeecCCCCCChhhhhhhcC-C-CCCCCccEEEeecC
Q 004729 553 LHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSD-G-GGCPMLKSLVLDNC 620 (733)
Q Consensus 553 L~~L~l~~n~L~~l~~~~~~~L~~l~~~~~~L~~L~Ls~C~~lt~~~~~~~~~-~-~~l~~L~~L~L~~c 620 (733)
|+.|++.+|.++... ...+......+++|+.|++++| .+++.....+.. . ...++|++|+|++|
T Consensus 315 L~~L~L~~n~l~~~~---~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n 380 (461)
T 1z7x_W 315 LESLWVKSCSFTAAC---CSHFSSVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADC 380 (461)
T ss_dssp CCEEECTTSCCBGGG---HHHHHHHHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred ceeeEcCCCCCchHH---HHHHHHHHhhCCCccEEEccCC-ccccccHHHHHHHHcCCCCceEEEECCCC
Confidence 555555555544321 1222233334555555555553 455443332211 0 11445555555555
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.3e-20 Score=207.67 Aligned_cols=285 Identities=16% Similarity=0.153 Sum_probs=172.7
Q ss_pred ccCCCCCcEEEEecCcCCcccccccccCCCccEEEeeccccchhcccCCCCcEEEEcCCchHHHhhCCCCccEEEEecCC
Q 004729 332 LADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIRCPQLEHLSLKRSNMAQAVLNCPLLHLLDIASCH 411 (733)
Q Consensus 332 L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~i~~~~~~L~~L~L~~~~l~~~~~~~~~L~~L~L~~c~ 411 (733)
++++++|++|+++++.+... + ....+++|++|++++|.+..++ +..+++|++|+++++
T Consensus 38 ~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~~-------------------~~~l~~L~~L~Ls~N- 95 (457)
T 3bz5_A 38 EEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTLD-------------------LSQNTNLTYLACDSN- 95 (457)
T ss_dssp HHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCCC-------------------CTTCTTCSEEECCSS-
T ss_pred hhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeEc-------------------cccCCCCCEEECcCC-
Confidence 45578999999999887753 3 3457788888888887654432 234455666666553
Q ss_pred CCChHHHHHHHhcCCCCcEEeccCCCCCChhHHHHHHHhcccccccccccCCCCCcCCCCCCCccEEEeCCCCCCchHHH
Q 004729 412 KLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNISLESVRLPMLTVLQLHSCEGITSASM 491 (733)
Q Consensus 412 ~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~~~l~~L~~L~L~~c~~l~~~~~ 491 (733)
.+.... +..+++|++|+++++. ++... ...+++|++|+++++.........+++|++|+++++..+...
T Consensus 96 ~l~~~~----~~~l~~L~~L~L~~N~-l~~l~----~~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~~~~~~-- 164 (457)
T 3bz5_A 96 KLTNLD----VTPLTKLTYLNCDTNK-LTKLD----VSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKL-- 164 (457)
T ss_dssp CCSCCC----CTTCTTCCEEECCSSC-CSCCC----CTTCTTCCEEECTTSCCSCCCCTTCTTCCEEECTTCSCCCCC--
T ss_pred CCceee----cCCCCcCCEEECCCCc-CCeec----CCCCCcCCEEECCCCccceeccccCCcCCEEECCCCCccccc--
Confidence 233321 3456677777777665 43321 235667777777766533334557888999999887555544
Q ss_pred HHhhCCCCcCEEEEecCCCCccccc-CCCCCcEEEeccccCCccccccccccceeecccCcCCceeeeccCccccccccc
Q 004729 492 AAISHSYMLEVLELDNCNLLTSVSL-ELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQK 570 (733)
Q Consensus 492 ~~l~~~~~L~~L~L~~~~~l~~~~~-~l~~L~~L~L~~c~~l~~l~l~~~~L~~l~l~~c~~L~~L~l~~n~L~~l~~~~ 570 (733)
.+..+++|++|++++|. ++.++. .+++|+.|.+.++ .++.+.+..+++|+.|++++|.++.+.
T Consensus 165 -~~~~l~~L~~L~ls~n~-l~~l~l~~l~~L~~L~l~~N-----------~l~~~~l~~l~~L~~L~Ls~N~l~~ip--- 228 (457)
T 3bz5_A 165 -DVTPQTQLTTLDCSFNK-ITELDVSQNKLLNRLNCDTN-----------NITKLDLNQNIQLTFLDCSSNKLTEID--- 228 (457)
T ss_dssp -CCTTCTTCCEEECCSSC-CCCCCCTTCTTCCEEECCSS-----------CCSCCCCTTCTTCSEEECCSSCCSCCC---
T ss_pred -ccccCCcCCEEECCCCc-cceeccccCCCCCEEECcCC-----------cCCeeccccCCCCCEEECcCCcccccC---
Confidence 36678899999999884 454443 2455666655443 344445788899999999999988753
Q ss_pred cccHHHHHhcCCCCcEEeecCCCCCChhhhhhhcCCCCCCCccEEEeecCCCCccccccCCCccEEecccccccccccc-
Q 004729 571 QENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRFCSTSLVSLSLVGCRAITALEL- 649 (733)
Q Consensus 571 ~~~L~~l~~~~~~L~~L~Ls~C~~lt~~~~~~~~~~~~l~~L~~L~L~~c~~L~~~~~~~~sL~~L~L~~c~~L~~l~~- 649 (733)
...+++|+.|++++ +.++... .+.+++|+.|.+..+ +|+.|++++|..+..++.
T Consensus 229 -------~~~l~~L~~L~l~~-N~l~~~~------~~~l~~L~~L~l~~n-----------~L~~L~l~~n~~~~~~~~~ 283 (457)
T 3bz5_A 229 -------VTPLTQLTYFDCSV-NPLTELD------VSTLSKLTTLHCIQT-----------DLLEIDLTHNTQLIYFQAE 283 (457)
T ss_dssp -------CTTCTTCSEEECCS-SCCSCCC------CTTCTTCCEEECTTC-----------CCSCCCCTTCTTCCEEECT
T ss_pred -------ccccCCCCEEEeeC-CcCCCcC------HHHCCCCCEEeccCC-----------CCCEEECCCCccCCccccc
Confidence 23678999999998 4666432 245666766665442 334444444443333332
Q ss_pred ccccccEEecccccccccccccccCCcEEEecCCCCccccc
Q 004729 650 KCPILEKVCLDGCDHIESASFVPVALQSLNLGICPKLSTLG 690 (733)
Q Consensus 650 ~~p~L~~L~L~~c~~L~~~~~~~~~L~~L~L~~c~~L~~l~ 690 (733)
.|++|+.|++++|..++.+.....+|+.|++++|++|+.+.
T Consensus 284 ~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~ 324 (457)
T 3bz5_A 284 GCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLY 324 (457)
T ss_dssp TCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE
T ss_pred ccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEE
Confidence 34555555555554444433333344444444444444433
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.82 E-value=4.8e-20 Score=211.15 Aligned_cols=209 Identities=13% Similarity=0.118 Sum_probs=121.9
Q ss_pred CCCcCEEEEecCCCCcccccCC-----CCCcEEEeccccCCccccccccccceeecccCcCCceeeeccCcccccccccc
Q 004729 497 SYMLEVLELDNCNLLTSVSLEL-----PRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQ 571 (733)
Q Consensus 497 ~~~L~~L~L~~~~~l~~~~~~l-----~~L~~L~L~~c~~l~~l~l~~~~L~~l~l~~c~~L~~L~l~~n~L~~l~~~~~ 571 (733)
.++|++|++++|.....+|..+ ++|+.|.+.+...-. +.+....+. .+....+|+.|++.+|.+..+..
T Consensus 275 ~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~-~~~p~~~~~--~~~~~~~L~~L~l~~n~~~~~~~--- 348 (562)
T 3a79_B 275 PRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQV-FLFSKEALY--SVFAEMNIKMLSISDTPFIHMVC--- 348 (562)
T ss_dssp TSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECC-CSSCHHHHH--HHHHTCCCSEEEEESSCCCCCCC---
T ss_pred cccccEEEEeccEeeccccchhhhcccccchheehhhcccce-eecChhhhh--hhhccCcceEEEccCCCcccccC---
Confidence 3477777777765433455443 556665554322111 000000000 01112457778887777654432
Q ss_pred ccHHHHHhcCCCCcEEeecCCCCCChhhhhhhcCCCCCCCccEEEeecCCCCcccc------ccCCCccEEecccccccc
Q 004729 572 ENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVR------FCSTSLVSLSLVGCRAIT 645 (733)
Q Consensus 572 ~~L~~l~~~~~~L~~L~Ls~C~~lt~~~~~~~~~~~~l~~L~~L~L~~c~~L~~~~------~~~~sL~~L~L~~c~~L~ 645 (733)
...+++|+.|++++ +.+++..+..+ +.+++|+.|+++++ .++.++ ..+++|+.|+++++. ++
T Consensus 349 ------~~~l~~L~~L~l~~-n~l~~~~~~~~---~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~l~~N~-l~ 416 (562)
T 3a79_B 349 ------PPSPSSFTFLNFTQ-NVFTDSVFQGC---STLKRLQTLILQRN-GLKNFFKVALMTKNMSSLETLDVSLNS-LN 416 (562)
T ss_dssp ------CSSCCCCCEEECCS-SCCCTTTTTTC---CSCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEECTTSC-CB
T ss_pred ------ccCCCCceEEECCC-Cccccchhhhh---cccCCCCEEECCCC-CcCCcccchhhhcCCCCCCEEECCCCc-CC
Confidence 12567888888888 46665433333 56788888888776 455432 256788888888753 44
Q ss_pred c-cc----cccccccEEecccccccccccc--cccCCcEEEecCCCCccccccCc---ccccEEEecCCCCCCccC----
Q 004729 646 A-LE----LKCPILEKVCLDGCDHIESASF--VPVALQSLNLGICPKLSTLGIEA---LHMVVLELKGCGVLSDAY---- 711 (733)
Q Consensus 646 ~-l~----~~~p~L~~L~L~~c~~L~~~~~--~~~~L~~L~L~~c~~L~~l~~~~---~~L~~L~l~~c~~L~~~~---- 711 (733)
. ++ ..+++|++|+++++. ++...+ .+.+|++|+++++ +++.+|... .+|+.|++++|.. +.+.
T Consensus 417 ~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N~l-~~l~~~~~ 493 (562)
T 3a79_B 417 SHAYDRTCAWAESILVLNLSSNM-LTGSVFRCLPPKVKVLDLHNN-RIMSIPKDVTHLQALQELNVASNQL-KSVPDGVF 493 (562)
T ss_dssp SCCSSCCCCCCTTCCEEECCSSC-CCGGGGSSCCTTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCSSCC-CCCCTTST
T ss_pred CccChhhhcCcccCCEEECCCCC-CCcchhhhhcCcCCEEECCCC-cCcccChhhcCCCCCCEEECCCCCC-CCCCHHHH
Confidence 3 33 256888888888854 443222 2357888888887 577776433 3588888888653 3332
Q ss_pred CCCCCccEEeccCcc
Q 004729 712 INCPLLTSLDASFCR 726 (733)
Q Consensus 712 ~~~p~L~~L~l~~C~ 726 (733)
..+++|+.|++++++
T Consensus 494 ~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 494 DRLTSLQYIWLHDNP 508 (562)
T ss_dssp TTCTTCCCEECCSCC
T ss_pred hcCCCCCEEEecCCC
Confidence 267888888888764
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.82 E-value=6.8e-19 Score=201.53 Aligned_cols=391 Identities=15% Similarity=0.171 Sum_probs=230.9
Q ss_pred eEEeeCCCCCCHHHHHHHHhhCCCccEEEEcCCCchhHHHHHHhhcCCCCCEEEecCccCChHHHHhccCCCCCcEEEEe
Q 004729 265 RCLNFENRKISVEQFEDVCQRYPNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVN 344 (733)
Q Consensus 265 ~~l~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~ 344 (733)
+.+++....+.. +.. .-.++++.|++++. .+.......+..+++|++|+|++|.++...+..+..+++|++|+++
T Consensus 34 ~~l~ls~~~L~~--ip~--~~~~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 108 (562)
T 3a79_B 34 SMVDYSNRNLTH--VPK--DLPPRTKALSLSQN-SISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVS 108 (562)
T ss_dssp CEEECTTSCCCS--CCT--TSCTTCCEEECCSS-CCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECT
T ss_pred cEEEcCCCCCcc--CCC--CCCCCcCEEECCCC-CccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECC
Confidence 567766544431 111 11367899999884 3454444567888999999999998887667778889999999999
Q ss_pred cCcCCcccccccccCCCccEEEeeccccchh-----cccCCCCcEEEEcCCchHH-HhhCCCCc--cEEEEecCCCC--C
Q 004729 345 DATLGNGVQEIPINHDQLRRLEITKCRVMRV-----SIRCPQLEHLSLKRSNMAQ-AVLNCPLL--HLLDIASCHKL--S 414 (733)
Q Consensus 345 ~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~i-----~~~~~~L~~L~L~~~~l~~-~~~~~~~L--~~L~L~~c~~l--~ 414 (733)
+|.+. .++.. .+++|++|++++|.+..+ ...+++|+.|+++++.+.. .+..+++| ++|+++++. + .
T Consensus 109 ~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~L~~n~-l~~~ 184 (562)
T 3a79_B 109 HNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVS-YHIK 184 (562)
T ss_dssp TSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTSCEEEEEEEESS-CCCC
T ss_pred CCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCchhhhhhceeeEEEeeccc-cccc
Confidence 99877 34433 788999999999887643 3468889999998887653 23445555 888887753 2 0
Q ss_pred h-----------------------------------------------------HHHHHHHhcCCCCcEEeccCCCCCCh
Q 004729 415 D-----------------------------------------------------AAIRLAATSCPQLESLDMSNCSCVSD 441 (733)
Q Consensus 415 ~-----------------------------------------------------~~l~~l~~~~~~L~~L~L~~~~~l~~ 441 (733)
. ......+..+++|+.|++..+. +..
T Consensus 185 ~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~-l~~ 263 (562)
T 3a79_B 185 GGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIE-TTW 263 (562)
T ss_dssp SSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEE-ECH
T ss_pred ccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCc-CcH
Confidence 0 0011123344555555555444 444
Q ss_pred hHHHHHHH--hcccccccccccCC---CCCcCC-----CCCCCccEEEeCCCCC-CchHHHHHhhCCCCcCEEEEecCCC
Q 004729 442 ESLREIAL--SCANLRILNSSYCP---NISLES-----VRLPMLTVLQLHSCEG-ITSASMAAISHSYMLEVLELDNCNL 510 (733)
Q Consensus 442 ~~l~~l~~--~~~~L~~L~L~~~~---~l~~~~-----~~l~~L~~L~L~~c~~-l~~~~~~~l~~~~~L~~L~L~~~~~ 510 (733)
..+..+.. ..++|++|+++++. .++... ..++.|+.+++..... +....+..+....+|++|++++|..
T Consensus 264 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~ 343 (562)
T 3a79_B 264 KCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPF 343 (562)
T ss_dssp HHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCC
T ss_pred HHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCc
Confidence 43333322 23477777777765 222222 2333444444433211 1112222222346788888888754
Q ss_pred Ccccc--cCCCCCcEEEeccccCCccccccccccceeecccCcCCceeeeccCccccccccccccHHHHHhcCCCCcEEe
Q 004729 511 LTSVS--LELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVD 588 (733)
Q Consensus 511 l~~~~--~~l~~L~~L~L~~c~~l~~l~l~~~~L~~l~l~~c~~L~~L~l~~n~L~~l~~~~~~~L~~l~~~~~~L~~L~ 588 (733)
...+ ..+++|+.|++.++. ++..... .+..+++|+.|++.+|.++.+. .+......+++|+.|+
T Consensus 344 -~~~~~~~~l~~L~~L~l~~n~-l~~~~~~-------~~~~l~~L~~L~L~~N~l~~~~-----~~~~~~~~l~~L~~L~ 409 (562)
T 3a79_B 344 -IHMVCPPSPSSFTFLNFTQNV-FTDSVFQ-------GCSTLKRLQTLILQRNGLKNFF-----KVALMTKNMSSLETLD 409 (562)
T ss_dssp -CCCCCCSSCCCCCEEECCSSC-CCTTTTT-------TCCSCSSCCEEECCSSCCCBTT-----HHHHTTTTCTTCCEEE
T ss_pred -ccccCccCCCCceEEECCCCc-cccchhh-------hhcccCCCCEEECCCCCcCCcc-----cchhhhcCCCCCCEEE
Confidence 3332 346777777776653 2221111 2567788888888888777542 2222334677888888
Q ss_pred ecCCCCCChhhhhhhcCCCCCCCccEEEeecCCCCccccccC-CCccEEecccccccccccc---ccccccEEecccccc
Q 004729 589 LTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRFCS-TSLVSLSLVGCRAITALEL---KCPILEKVCLDGCDH 664 (733)
Q Consensus 589 Ls~C~~lt~~~~~~~~~~~~l~~L~~L~L~~c~~L~~~~~~~-~sL~~L~L~~c~~L~~l~~---~~p~L~~L~L~~c~~ 664 (733)
+++| .++...... ....+++|+.|++++|.--..++..+ ++|+.|+++++ .|+.++. .+++|++|+++++ .
T Consensus 410 l~~N-~l~~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N-~ 484 (562)
T 3a79_B 410 VSLN-SLNSHAYDR--TCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNN-RIMSIPKDVTHLQALQELNVASN-Q 484 (562)
T ss_dssp CTTS-CCBSCCSSC--CCCCCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCSS-C
T ss_pred CCCC-cCCCccChh--hhcCcccCCEEECCCCCCCcchhhhhcCcCCEEECCCC-cCcccChhhcCCCCCCEEECCCC-C
Confidence 8884 565422111 12467788888888874323333333 57888888875 5665543 5678888888773 4
Q ss_pred ccccc---c-cccCCcEEEecCCC
Q 004729 665 IESAS---F-VPVALQSLNLGICP 684 (733)
Q Consensus 665 L~~~~---~-~~~~L~~L~L~~c~ 684 (733)
++.+. + ...+|++|++++++
T Consensus 485 l~~l~~~~~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 485 LKSVPDGVFDRLTSLQYIWLHDNP 508 (562)
T ss_dssp CCCCCTTSTTTCTTCCCEECCSCC
T ss_pred CCCCCHHHHhcCCCCCEEEecCCC
Confidence 44322 1 12356666666654
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=99.81 E-value=1.4e-18 Score=194.23 Aligned_cols=334 Identities=20% Similarity=0.197 Sum_probs=245.7
Q ss_pred eEEeeCCCCCCHHHHHHHHhhCCCccEEEEcCCCchhHHHHHHhhcCCCCCEEEecCccCChHHHHhccCCCCCcEEEEe
Q 004729 265 RCLNFENRKISVEQFEDVCQRYPNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVN 344 (733)
Q Consensus 265 ~~l~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~ 344 (733)
+.+++....+.. +.. +..+++++.|+++++. +..... +..+++|++|++++|.+....+ +..+++|++|+++
T Consensus 49 ~~L~l~~~~i~~--l~~-~~~l~~L~~L~Ls~n~-l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~ 120 (466)
T 1o6v_A 49 TTLQADRLGIKS--IDG-VEYLNNLTQINFSNNQ-LTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLF 120 (466)
T ss_dssp CEEECCSSCCCC--CTT-GGGCTTCCEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECC
T ss_pred cEEecCCCCCcc--Ccc-hhhhcCCCEEECCCCc-cCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEECC
Confidence 455555543321 111 4568899999999854 333322 7899999999999998885443 8899999999999
Q ss_pred cCcCCcccccccccCCCccEEEeeccccchh--cccCCCCcEEEEcCCchH-HHhhCCCCccEEEEecCCCCChHHHHHH
Q 004729 345 DATLGNGVQEIPINHDQLRRLEITKCRVMRV--SIRCPQLEHLSLKRSNMA-QAVLNCPLLHLLDIASCHKLSDAAIRLA 421 (733)
Q Consensus 345 ~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~i--~~~~~~L~~L~L~~~~l~-~~~~~~~~L~~L~L~~c~~l~~~~l~~l 421 (733)
+|.+....+ ...+++|++|++++|.+..+ ...+++|+.|.+.++... ..+..+++|++|+++++. +.... .
T Consensus 121 ~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~---~ 194 (466)
T 1o6v_A 121 NNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNK-VSDIS---V 194 (466)
T ss_dssp SSCCCCCGG--GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSC-CCCCG---G
T ss_pred CCCCCCChH--HcCCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCc-CCCCh---h
Confidence 998776433 67899999999999987654 357899999999743111 237789999999999964 55432 3
Q ss_pred HhcCCCCcEEeccCCCCCChhHHHHHHHhcccccccccccCCCCCc-CCCCCCCccEEEeCCCCCCchHHHHHhhCCCCc
Q 004729 422 ATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNISL-ESVRLPMLTVLQLHSCEGITSASMAAISHSYML 500 (733)
Q Consensus 422 ~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~-~~~~l~~L~~L~L~~c~~l~~~~~~~l~~~~~L 500 (733)
+..+++|+.|+++++. ++.... ...+++|+.|+++++..... ....+++|++|++++|. +..... +..+++|
T Consensus 195 l~~l~~L~~L~l~~n~-l~~~~~---~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~-l~~~~~--~~~l~~L 267 (466)
T 1o6v_A 195 LAKLTNLESLIATNNQ-ISDITP---LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQ-ISNLAP--LSGLTKL 267 (466)
T ss_dssp GGGCTTCSEEECCSSC-CCCCGG---GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSC-CCCCGG--GTTCTTC
T ss_pred hccCCCCCEEEecCCc-cccccc---ccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCc-cccchh--hhcCCCC
Confidence 6788999999999987 444322 34689999999998873332 23378999999999964 544332 7889999
Q ss_pred CEEEEecCCCCccccc--CCCCCcEEEeccccCCccccccccccceeecccCcCCceeeeccCccccccccccccHHHHH
Q 004729 501 EVLELDNCNLLTSVSL--ELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLA 578 (733)
Q Consensus 501 ~~L~L~~~~~l~~~~~--~l~~L~~L~L~~c~~l~~l~l~~~~L~~l~l~~c~~L~~L~l~~n~L~~l~~~~~~~L~~l~ 578 (733)
++|++++|.. ..++. .+++|+.|.+.++. ++.+. .+..+++|+.|++.+|.+..+.. .
T Consensus 268 ~~L~l~~n~l-~~~~~~~~l~~L~~L~L~~n~-l~~~~---------~~~~l~~L~~L~L~~n~l~~~~~---------~ 327 (466)
T 1o6v_A 268 TELKLGANQI-SNISPLAGLTALTNLELNENQ-LEDIS---------PISNLKNLTYLTLYFNNISDISP---------V 327 (466)
T ss_dssp SEEECCSSCC-CCCGGGTTCTTCSEEECCSSC-CSCCG---------GGGGCTTCSEEECCSSCCSCCGG---------G
T ss_pred CEEECCCCcc-CccccccCCCccCeEEcCCCc-ccCch---------hhcCCCCCCEEECcCCcCCCchh---------h
Confidence 9999999854 43332 36888888887763 33321 16789999999999999887632 2
Q ss_pred hcCCCCcEEeecCCCCCChhhhhhhcCCCCCCCccEEEeecCCCCccccc--cCCCccEEecccccccccc
Q 004729 579 LQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRF--CSTSLVSLSLVGCRAITAL 647 (733)
Q Consensus 579 ~~~~~L~~L~Ls~C~~lt~~~~~~~~~~~~l~~L~~L~L~~c~~L~~~~~--~~~sL~~L~L~~c~~L~~l 647 (733)
..+++|+.|++++| .+++. .....+++|+.|++++|. ++.... .+++|+.|++++|+ ++.+
T Consensus 328 ~~l~~L~~L~l~~n-~l~~~-----~~l~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~n~-~~~~ 390 (466)
T 1o6v_A 328 SSLTKLQRLFFYNN-KVSDV-----SSLANLTNINWLSAGHNQ-ISDLTPLANLTRITQLGLNDQA-WTNA 390 (466)
T ss_dssp GGCTTCCEEECCSS-CCCCC-----GGGTTCTTCCEEECCSSC-CCBCGGGTTCTTCCEEECCCEE-EECC
T ss_pred ccCccCCEeECCCC-ccCCc-----hhhccCCCCCEEeCCCCc-cCccchhhcCCCCCEEeccCCc-ccCC
Confidence 37899999999996 67654 224679999999999985 444432 78899999999964 4443
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=99.81 E-value=4.4e-20 Score=205.29 Aligned_cols=293 Identities=16% Similarity=0.129 Sum_probs=143.6
Q ss_pred CCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEEeeccccchhcccCCCCcEEEEcCCch
Q 004729 313 NLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIRCPQLEHLSLKRSNM 392 (733)
Q Consensus 313 ~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~i~~~~~~L~~L~L~~~~l 392 (733)
++++|+++++.++. ++. -.++|++|++++|.+.. ++ ..+++|++|++++|.+..++...++|++|++++|.+
T Consensus 72 ~l~~L~l~~~~l~~-lp~---~~~~L~~L~l~~n~l~~-lp---~~~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l 143 (454)
T 1jl5_A 72 QAHELELNNLGLSS-LPE---LPPHLESLVASCNSLTE-LP---ELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQL 143 (454)
T ss_dssp TCSEEECTTSCCSC-CCS---CCTTCSEEECCSSCCSS-CC---CCCTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCC
T ss_pred CCCEEEecCCcccc-CCC---CcCCCCEEEccCCcCCc-cc---cccCCCcEEECCCCccCcccCCCCCCCEEECcCCCC
Confidence 34666666665542 111 12556666666665543 22 223566666666665555444445666666666544
Q ss_pred HHH--hhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCCCCCChhHHHHHHHhcccccccccccCCCCCcCCC
Q 004729 393 AQA--VLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNISLESV 470 (733)
Q Consensus 393 ~~~--~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~~ 470 (733)
..+ +..+++|++|+++++ .+... + ...++|+.|+++++. ++. ++. +..+++|+.|+++++...... .
T Consensus 144 ~~lp~~~~l~~L~~L~l~~N-~l~~l--p---~~~~~L~~L~L~~n~-l~~--l~~-~~~l~~L~~L~l~~N~l~~l~-~ 212 (454)
T 1jl5_A 144 EKLPELQNSSFLKIIDVDNN-SLKKL--P---DLPPSLEFIAAGNNQ-LEE--LPE-LQNLPFLTAIYADNNSLKKLP-D 212 (454)
T ss_dssp SSCCCCTTCTTCCEEECCSS-CCSCC--C---CCCTTCCEEECCSSC-CSS--CCC-CTTCTTCCEEECCSSCCSSCC-C
T ss_pred CCCcccCCCCCCCEEECCCC-cCccc--C---CCcccccEEECcCCc-CCc--Ccc-ccCCCCCCEEECCCCcCCcCC-C
Confidence 332 345566666666664 23321 1 122466666666654 322 111 225556666666655422111 1
Q ss_pred CCCCccEEEeCCCCCCchHHHHHhhCCCCcCEEEEecCCCCcccccCCCCCcEEEeccccCCccccccccccceeecccC
Q 004729 471 RLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNC 550 (733)
Q Consensus 471 ~l~~L~~L~L~~c~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~l~~L~~L~L~~c~~l~~l~l~~~~L~~l~l~~c 550 (733)
..++|++|+++++ .+.... .++.+++|++|++++|. ++.++..+++|+.|.+.++. ++.+. ...
T Consensus 213 ~~~~L~~L~l~~n-~l~~lp--~~~~l~~L~~L~l~~N~-l~~l~~~~~~L~~L~l~~N~-l~~l~-----------~~~ 276 (454)
T 1jl5_A 213 LPLSLESIVAGNN-ILEELP--ELQNLPFLTTIYADNNL-LKTLPDLPPSLEALNVRDNY-LTDLP-----------ELP 276 (454)
T ss_dssp CCTTCCEEECCSS-CCSSCC--CCTTCTTCCEEECCSSC-CSSCCSCCTTCCEEECCSSC-CSCCC-----------CCC
T ss_pred CcCcccEEECcCC-cCCccc--ccCCCCCCCEEECCCCc-CCcccccccccCEEECCCCc-ccccC-----------ccc
Confidence 2245666666663 233221 24555666666666553 34444444555555554432 22110 112
Q ss_pred cCCceeeeccCccccccccccccHHHHHhcCCCCcEEeecCCCCCChhhhhhhcCCCCCCCccEEEeecCCCCccccccC
Q 004729 551 AALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRFCS 630 (733)
Q Consensus 551 ~~L~~L~l~~n~L~~l~~~~~~~L~~l~~~~~~L~~L~Ls~C~~lt~~~~~~~~~~~~l~~L~~L~L~~c~~L~~~~~~~ 630 (733)
++|+.|++++|.++.+.. ..++|+.|++++| .++. +. ...++|+.|+++++ .++.++..+
T Consensus 277 ~~L~~L~ls~N~l~~l~~-----------~~~~L~~L~l~~N-~l~~-----i~--~~~~~L~~L~Ls~N-~l~~lp~~~ 336 (454)
T 1jl5_A 277 QSLTFLDVSENIFSGLSE-----------LPPNLYYLNASSN-EIRS-----LC--DLPPSLEELNVSNN-KLIELPALP 336 (454)
T ss_dssp TTCCEEECCSSCCSEESC-----------CCTTCCEEECCSS-CCSE-----EC--CCCTTCCEEECCSS-CCSCCCCCC
T ss_pred CcCCEEECcCCccCcccC-----------cCCcCCEEECcCC-cCCc-----cc--CCcCcCCEEECCCC-ccccccccC
Confidence 456666666665554310 1145666666653 4432 11 11235666666554 344454455
Q ss_pred CCccEEeccccccccccccccccccEEeccc
Q 004729 631 TSLVSLSLVGCRAITALELKCPILEKVCLDG 661 (733)
Q Consensus 631 ~sL~~L~L~~c~~L~~l~~~~p~L~~L~L~~ 661 (733)
++|+.|+++++ .++.++..+++|++|++++
T Consensus 337 ~~L~~L~L~~N-~l~~lp~~l~~L~~L~L~~ 366 (454)
T 1jl5_A 337 PRLERLIASFN-HLAEVPELPQNLKQLHVEY 366 (454)
T ss_dssp TTCCEEECCSS-CCSCCCCCCTTCCEEECCS
T ss_pred CcCCEEECCCC-ccccccchhhhccEEECCC
Confidence 66666666653 3444444455666666665
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=1.9e-19 Score=200.40 Aligned_cols=321 Identities=17% Similarity=0.159 Sum_probs=155.4
Q ss_pred CCccEEEEcCCCchhHHHHHHhhcCCCCCEEEecCccCChH-HHHhccCCCCCcEEEEecCcCCcccccccccCCCccEE
Q 004729 287 PNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDA-FFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRL 365 (733)
Q Consensus 287 ~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~i~~~-~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L 365 (733)
++++.|++++. .+....+..+..+++|++|++++|.+... .+..+..+++|++|+|++|.+....+..+..+++|++|
T Consensus 30 ~~l~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 108 (455)
T 3v47_A 30 AHVNYVDLSLN-SIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVL 108 (455)
T ss_dssp TTCCEEECCSS-CCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEE
T ss_pred CccCEEEecCC-ccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEE
Confidence 34555555552 23333333445555566666555554322 12334555556666665555554444444555555666
Q ss_pred Eeeccccch-h-----cccCCCCcEEEEcCCchHHH-----hhCCCCccEEEEecCCCCChHHHHHH-------------
Q 004729 366 EITKCRVMR-V-----SIRCPQLEHLSLKRSNMAQA-----VLNCPLLHLLDIASCHKLSDAAIRLA------------- 421 (733)
Q Consensus 366 ~L~~~~~~~-i-----~~~~~~L~~L~L~~~~l~~~-----~~~~~~L~~L~L~~c~~l~~~~l~~l------------- 421 (733)
++++|.+.. + ...+++|+.|++++|.+... +..+++|++|+++++. +.......+
T Consensus 109 ~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~~~L~~L~l 187 (455)
T 3v47_A 109 TLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNK-VKSICEEDLLNFQGKHFTLLRL 187 (455)
T ss_dssp ECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCC-BSCCCTTTSGGGTTCEEEEEEC
T ss_pred eCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCc-ccccChhhhhcccccccccccc
Confidence 655555432 1 23455555555555544322 4455555666555532 221110000
Q ss_pred --------------------HhcCCCCcEEeccCCCCCChhHHHHHHHh--cccccccccccCCCCCcCCCCCCCccEEE
Q 004729 422 --------------------ATSCPQLESLDMSNCSCVSDESLREIALS--CANLRILNSSYCPNISLESVRLPMLTVLQ 479 (733)
Q Consensus 422 --------------------~~~~~~L~~L~L~~~~~l~~~~l~~l~~~--~~~L~~L~L~~~~~l~~~~~~l~~L~~L~ 479 (733)
+..+++|+.|+++++. ++......+... .++|+.|.++++........ ..
T Consensus 188 ~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~------ 259 (455)
T 3v47_A 188 SSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNG-FKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFG-HT------ 259 (455)
T ss_dssp TTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSC-CCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTT-CC------
T ss_pred ccCcccccchhhccccccccccccceeeeEecCCCc-ccccchhhhhccccccceeeEeeccccccccccc-hh------
Confidence 1122445555555554 443333333221 14555555544432111000 00
Q ss_pred eCCCCCCchHHHHHhh--CCCCcCEEEEecCCCCccccc---CCCCCcEEEeccccCCccccccccccceeecccCcCCc
Q 004729 480 LHSCEGITSASMAAIS--HSYMLEVLELDNCNLLTSVSL---ELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAALH 554 (733)
Q Consensus 480 L~~c~~l~~~~~~~l~--~~~~L~~L~L~~~~~l~~~~~---~l~~L~~L~L~~c~~l~~l~l~~~~L~~l~l~~c~~L~ 554 (733)
.+.+.....+. ..++|++|++++|......+. .+++|+.|++.++. ++..... .+..+++|+
T Consensus 260 -----~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~-------~~~~l~~L~ 326 (455)
T 3v47_A 260 -----NFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNE-INKIDDN-------AFWGLTHLL 326 (455)
T ss_dssp -----SSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSC-CCEECTT-------TTTTCTTCC
T ss_pred -----hhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCc-ccccChh-------HhcCcccCC
Confidence 00000000011 124566666666643322222 24555555554442 1111100 256677888
Q ss_pred eeeeccCccccccccccccHHHHHhcCCCCcEEeecCCCCCChhhhhhhcCCCCCCCccEEEeecCCCCccccc----cC
Q 004729 555 RINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRF----CS 630 (733)
Q Consensus 555 ~L~l~~n~L~~l~~~~~~~L~~l~~~~~~L~~L~Ls~C~~lt~~~~~~~~~~~~l~~L~~L~L~~c~~L~~~~~----~~ 630 (733)
.|++++|.++.+... .+..+++|+.|++++| .++......+ ..+++|++|+|+++ .++.++. .+
T Consensus 327 ~L~Ls~N~l~~~~~~-------~~~~l~~L~~L~Ls~N-~l~~~~~~~~---~~l~~L~~L~L~~N-~l~~~~~~~~~~l 394 (455)
T 3v47_A 327 KLNLSQNFLGSIDSR-------MFENLDKLEVLDLSYN-HIRALGDQSF---LGLPNLKELALDTN-QLKSVPDGIFDRL 394 (455)
T ss_dssp EEECCSSCCCEECGG-------GGTTCTTCCEEECCSS-CCCEECTTTT---TTCTTCCEEECCSS-CCSCCCTTTTTTC
T ss_pred EEECCCCccCCcChh-------HhcCcccCCEEECCCC-cccccChhhc---cccccccEEECCCC-ccccCCHhHhccC
Confidence 888888877655321 2235678888888884 6665544334 56788888888776 4555543 56
Q ss_pred CCccEEeccccc
Q 004729 631 TSLVSLSLVGCR 642 (733)
Q Consensus 631 ~sL~~L~L~~c~ 642 (733)
++|+.|++++++
T Consensus 395 ~~L~~L~l~~N~ 406 (455)
T 3v47_A 395 TSLQKIWLHTNP 406 (455)
T ss_dssp TTCCEEECCSSC
T ss_pred CcccEEEccCCC
Confidence 788888888753
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=99.80 E-value=2e-18 Score=184.99 Aligned_cols=293 Identities=17% Similarity=0.197 Sum_probs=178.1
Q ss_pred eeEEeeCCCCCCHHHHHHHHhhCCCccEEEEcCCCchhHHHHHHhhcCCCCCEEEecCccCChHHHHhccCCCCCcEEEE
Q 004729 264 WRCLNFENRKISVEQFEDVCQRYPNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNV 343 (733)
Q Consensus 264 w~~l~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L 343 (733)
.+.+++....+.. +. .+..+++++.|+++++. +..... +..+++|++|++++|.+... ..+..+++|++|++
T Consensus 46 L~~L~l~~~~i~~--~~-~~~~~~~L~~L~l~~n~-i~~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~L~l 117 (347)
T 4fmz_A 46 ITKLVVAGEKVAS--IQ-GIEYLTNLEYLNLNGNQ-ITDISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLRELYL 117 (347)
T ss_dssp CSEEECCSSCCCC--CT-TGGGCTTCCEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCSEEEC
T ss_pred ccEEEEeCCcccc--ch-hhhhcCCccEEEccCCc-cccchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcCCEEEC
Confidence 3566666544332 11 25678999999999863 333322 78999999999999988753 46889999999999
Q ss_pred ecCcCCcccccccccCCCccEEEeeccccchh---cccCCCCcEEEEcCCchHHHhhCCCCccEEEEecCCCCChHHHHH
Q 004729 344 NDATLGNGVQEIPINHDQLRRLEITKCRVMRV---SIRCPQLEHLSLKRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRL 420 (733)
Q Consensus 344 ~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~i---~~~~~~L~~L~L~~~~l~~~~~~~~~L~~L~L~~c~~l~~~~l~~ 420 (733)
++|.+..... ...+++|++|++++|..... ...+++|+.|+++++.+... ..
T Consensus 118 ~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~---------------------~~-- 172 (347)
T 4fmz_A 118 NEDNISDISP--LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDV---------------------TP-- 172 (347)
T ss_dssp TTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCC---------------------GG--
T ss_pred cCCcccCchh--hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCc---------------------hh--
Confidence 9998775433 66889999999998853321 23344555555554433211 10
Q ss_pred HHhcCCCCcEEeccCCCCCChhHHHHHHHhcccccccccccCCCCCcC-CCCCCCccEEEeCCCCCCchHHHHHhhCCCC
Q 004729 421 AATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNISLE-SVRLPMLTVLQLHSCEGITSASMAAISHSYM 499 (733)
Q Consensus 421 l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~-~~~l~~L~~L~L~~c~~l~~~~~~~l~~~~~ 499 (733)
+..+++|+.|+++++. +..... ...+++|+.|.+.++...... ...+++|++|++++|. +++... +..+++
T Consensus 173 -~~~l~~L~~L~l~~n~-l~~~~~---~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~-l~~~~~--~~~l~~ 244 (347)
T 4fmz_A 173 -IANLTDLYSLSLNYNQ-IEDISP---LASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNK-ITDLSP--LANLSQ 244 (347)
T ss_dssp -GGGCTTCSEEECTTSC-CCCCGG---GGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSC-CCCCGG--GTTCTT
T ss_pred -hccCCCCCEEEccCCc-cccccc---ccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCc-cCCCcc--hhcCCC
Confidence 3344455555555443 222111 224445555555544321111 2345566666666642 333222 556666
Q ss_pred cCEEEEecCCCCcccc--cCCCCCcEEEeccccCCccccccccccceeecccCcCCceeeeccCccccccccccccHHHH
Q 004729 500 LEVLELDNCNLLTSVS--LELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSL 577 (733)
Q Consensus 500 L~~L~L~~~~~l~~~~--~~l~~L~~L~L~~c~~l~~l~l~~~~L~~l~l~~c~~L~~L~l~~n~L~~l~~~~~~~L~~l 577 (733)
|++|++++|. ++.++ ..+++|+.|.+.++ .++.+. .+..+++|+.|++.+|.++.... ..
T Consensus 245 L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~n-~l~~~~---------~~~~l~~L~~L~L~~n~l~~~~~-------~~ 306 (347)
T 4fmz_A 245 LTWLEIGTNQ-ISDINAVKDLTKLKMLNVGSN-QISDIS---------VLNNLSQLNSLFLNNNQLGNEDM-------EV 306 (347)
T ss_dssp CCEEECCSSC-CCCCGGGTTCTTCCEEECCSS-CCCCCG---------GGGGCTTCSEEECCSSCCCGGGH-------HH
T ss_pred CCEEECCCCc-cCCChhHhcCCCcCEEEccCC-ccCCCh---------hhcCCCCCCEEECcCCcCCCcCh-------hH
Confidence 7777776663 33332 12566666666665 333321 15778899999999998875432 23
Q ss_pred HhcCCCCcEEeecCCCCCChhhhhhhcCCCCCCCccEEEeecCC
Q 004729 578 ALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCE 621 (733)
Q Consensus 578 ~~~~~~L~~L~Ls~C~~lt~~~~~~~~~~~~l~~L~~L~L~~c~ 621 (733)
...+++|+.|++++| .+++... ...+++|+.|++++|+
T Consensus 307 l~~l~~L~~L~L~~n-~l~~~~~-----~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 307 IGGLTNLTTLFLSQN-HITDIRP-----LASLSKMDSADFANQV 344 (347)
T ss_dssp HHTCTTCSEEECCSS-SCCCCGG-----GGGCTTCSEESSSCC-
T ss_pred hhccccCCEEEccCC-ccccccC-----hhhhhccceeehhhhc
Confidence 346889999999996 5665432 3568899999988874
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.1e-18 Score=190.19 Aligned_cols=207 Identities=18% Similarity=0.142 Sum_probs=131.0
Q ss_pred CCCccEEEEcCCCchhHHHHHHhhcCCCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEE
Q 004729 286 YPNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRL 365 (733)
Q Consensus 286 ~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L 365 (733)
.++++.+++.+. .+.......+..+++|++|+++++.+....+..+..+++|++|++++|.+....+..+..+++|++|
T Consensus 44 l~~l~~l~l~~~-~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 44 LNNQKIVTFKNS-TMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GCCCSEEEEESC-EESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCceEEEecCC-chhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 467888888874 3444444556788899999999888876656677888999999999888877666667788889999
Q ss_pred Eeeccccchhc----ccCCCCcEEEEcCCchHHH----hhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCCC
Q 004729 366 EITKCRVMRVS----IRCPQLEHLSLKRSNMAQA----VLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCS 437 (733)
Q Consensus 366 ~L~~~~~~~i~----~~~~~L~~L~L~~~~l~~~----~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~ 437 (733)
++++|.+..++ ..+++|+.|+++++.+..+ +..+++|++|+++++ .+.... ...+++|+.|+++++.
T Consensus 123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~----~~~l~~L~~L~l~~n~ 197 (390)
T 3o6n_A 123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN-RLTHVD----LSLIPSLFHANVSYNL 197 (390)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSS-CCSBCC----GGGCTTCSEEECCSSC
T ss_pred ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCC-cCCccc----cccccccceeeccccc
Confidence 98888776554 3467777887777765432 455677777777764 344332 3445677777776654
Q ss_pred CCChhHHHHHHHhcccccccccccCCCCCcCCCCCCCccEEEeCCCCCCchHHHHHhhCCCCcCEEEEecC
Q 004729 438 CVSDESLREIALSCANLRILNSSYCPNISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNC 508 (733)
Q Consensus 438 ~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~~~l~~L~~L~L~~c~~l~~~~~~~l~~~~~L~~L~L~~~ 508 (733)
++... ..++|+.|+++++..........++|++|++.++ .+++. ..+..+++|++|++++|
T Consensus 198 -l~~~~------~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n-~l~~~--~~l~~l~~L~~L~Ls~n 258 (390)
T 3o6n_A 198 -LSTLA------IPIAVEELDASHNSINVVRGPVNVELTILKLQHN-NLTDT--AWLLNYPGLVEVDLSYN 258 (390)
T ss_dssp -CSEEE------CCSSCSEEECCSSCCCEEECCCCSSCCEEECCSS-CCCCC--GGGGGCTTCSEEECCSS
T ss_pred -ccccC------CCCcceEEECCCCeeeeccccccccccEEECCCC-CCccc--HHHcCCCCccEEECCCC
Confidence 32211 2245666666555432222233445555555553 23332 23444555555555554
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=7.3e-18 Score=195.33 Aligned_cols=140 Identities=18% Similarity=0.109 Sum_probs=84.5
Q ss_pred cCCCCcEEeecCCCCCChhhhhhhcCCCCCCCccEEEeecCCCCcccc----ccCCCccEEecccccccccc----cccc
Q 004729 580 QCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVR----FCSTSLVSLSLVGCRAITAL----ELKC 651 (733)
Q Consensus 580 ~~~~L~~L~Ls~C~~lt~~~~~~~~~~~~l~~L~~L~L~~c~~L~~~~----~~~~sL~~L~L~~c~~L~~l----~~~~ 651 (733)
.+++|+.+++.+++......... ...+++|+.++++.+. +.... ..+++|+.|+++++..+..+ ...+
T Consensus 418 ~l~~L~~l~l~~~~~~~~~~~~~---~~~l~~l~~l~ls~n~-l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l 493 (635)
T 4g8a_A 418 GLEQLEHLDFQHSNLKQMSEFSV---FLSLRNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL 493 (635)
T ss_dssp TCTTCCEEECTTSEEESTTSSCT---TTTCTTCCEEECTTSC-CEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTC
T ss_pred ccccccchhhhhccccccccccc---cccccccccccccccc-cccccccccccchhhhhhhhhhcccccccCchhhhhc
Confidence 34555555555543222111111 2456667777776652 33322 25678888888887655432 2367
Q ss_pred ccccEEecccccccccc---ccc-ccCCcEEEecCCCCccccccCc----ccccEEEecCCCCCCcc---CCCC-CCccE
Q 004729 652 PILEKVCLDGCDHIESA---SFV-PVALQSLNLGICPKLSTLGIEA----LHMVVLELKGCGVLSDA---YINC-PLLTS 719 (733)
Q Consensus 652 p~L~~L~L~~c~~L~~~---~~~-~~~L~~L~L~~c~~L~~l~~~~----~~L~~L~l~~c~~L~~~---~~~~-p~L~~ 719 (733)
++|++|+|++| .++.+ .+. ..+|++|+|+++ +|+.++... .+|+.|+++++..-... ..++ ++|+.
T Consensus 494 ~~L~~L~Ls~N-~L~~l~~~~f~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~ 571 (635)
T 4g8a_A 494 RNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAF 571 (635)
T ss_dssp TTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTS-CCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCE
T ss_pred cccCEEECCCC-ccCCcChHHHcCCCCCCEEECCCC-cCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCE
Confidence 88999999985 45443 222 358999999887 487776433 36889999887653222 2255 47999
Q ss_pred EeccCc
Q 004729 720 LDASFC 725 (733)
Q Consensus 720 L~l~~C 725 (733)
|++++.
T Consensus 572 L~L~~N 577 (635)
T 4g8a_A 572 LNLTQN 577 (635)
T ss_dssp EECTTC
T ss_pred EEeeCC
Confidence 999753
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=6.9e-19 Score=197.24 Aligned_cols=216 Identities=17% Similarity=0.182 Sum_probs=116.4
Q ss_pred CCccEEEEcCCCchhHHHHHHhhcCCCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEE
Q 004729 287 PNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLE 366 (733)
Q Consensus 287 ~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~ 366 (733)
++++.|++++ ..+.......+..+++|++|+|++|.+....+..+..+++|++|+|++|.+.......+..+++|++|+
T Consensus 32 ~~l~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 110 (477)
T 2id5_A 32 TETRLLDLGK-NRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLD 110 (477)
T ss_dssp TTCSEEECCS-SCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEE
T ss_pred CCCcEEECCC-CccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEE
Confidence 3567777766 334443344556677777777777777655556666777777777777766654444555667777777
Q ss_pred eeccccchh----cccCCCCcEEEEcCCchHH----HhhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCCCC
Q 004729 367 ITKCRVMRV----SIRCPQLEHLSLKRSNMAQ----AVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSC 438 (733)
Q Consensus 367 L~~~~~~~i----~~~~~~L~~L~L~~~~l~~----~~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~~ 438 (733)
+++|.+..+ ...+++|+.|++++|.+.. .+..+++|++|+++++ .+.... ...+..+++|+.|+++++.
T Consensus 111 Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~-~~~l~~l~~L~~L~l~~n~- 187 (477)
T 2id5_A 111 ISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC-NLTSIP-TEALSHLHGLIVLRLRHLN- 187 (477)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESC-CCSSCC-HHHHTTCTTCCEEEEESCC-
T ss_pred CCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCC-cCcccC-hhHhcccCCCcEEeCCCCc-
Confidence 777765433 2456667777766665432 2445666666666664 333222 2234556666666666654
Q ss_pred CChhHHHHHHHhcccccccccccCCCCC---cCCCCCCCccEEEeCCCCCCchHHHHHhhCCCCcCEEEEecC
Q 004729 439 VSDESLREIALSCANLRILNSSYCPNIS---LESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNC 508 (733)
Q Consensus 439 l~~~~l~~l~~~~~~L~~L~L~~~~~l~---~~~~~l~~L~~L~L~~c~~l~~~~~~~l~~~~~L~~L~L~~~ 508 (733)
+..... ..+..+++|+.|+++++..+. .......+|++|+++++ .++......+..+++|+.|+|++|
T Consensus 188 i~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n 258 (477)
T 2id5_A 188 INAIRD-YSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHC-NLTAVPYLAVRHLVYLRFLNLSYN 258 (477)
T ss_dssp CCEECT-TCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESS-CCCSCCHHHHTTCTTCCEEECCSS
T ss_pred CcEeCh-hhcccCcccceeeCCCCccccccCcccccCccccEEECcCC-cccccCHHHhcCccccCeeECCCC
Confidence 222111 011134455555555543221 11222335555555552 344333334445555555555554
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.77 E-value=4e-18 Score=185.87 Aligned_cols=297 Identities=19% Similarity=0.176 Sum_probs=147.4
Q ss_pred cCCCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEEeeccccchhc----ccCCCCcEE
Q 004729 310 LLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVS----IRCPQLEHL 385 (733)
Q Consensus 310 ~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~i~----~~~~~L~~L 385 (733)
.+++++.|+++++.++......+..+++|++|+++++.+....+..+..+++|++|++++|.+..++ ..+++|+.|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 3578888888888776544445667888888888888777655555667788888888877665432 334555555
Q ss_pred EEcCCchHHHhhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCCCCCChhHHHHHHHhcccccccccccCCCC
Q 004729 386 SLKRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNI 465 (733)
Q Consensus 386 ~L~~~~l~~~~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~~l 465 (733)
+++++.+..+. ..++..+++|++|+++++. ++.... ..+..+++|++|+++++...
T Consensus 123 ~L~~n~l~~l~----------------------~~~~~~l~~L~~L~L~~n~-l~~~~~-~~~~~l~~L~~L~l~~n~l~ 178 (390)
T 3o6n_A 123 VLERNDLSSLP----------------------RGIFHNTPKLTTLSMSNNN-LERIED-DTFQATTSLQNLQLSSNRLT 178 (390)
T ss_dssp ECCSSCCCCCC----------------------TTTTTTCTTCCEEECCSSC-CCBCCT-TTTSSCTTCCEEECCSSCCS
T ss_pred ECCCCccCcCC----------------------HHHhcCCCCCcEEECCCCc-cCccCh-hhccCCCCCCEEECCCCcCC
Confidence 55554433210 0112334444444444433 211100 00112334444444433322
Q ss_pred CcCCCCCCCccEEEeCCCCCCchHHHHHhhCCCCcCEEEEecCCCCccccc-CCCCCcEEEeccccCCccccccccccce
Q 004729 466 SLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSL-ELPRLQNIRLVHCRKFADLNLRAMMLSS 544 (733)
Q Consensus 466 ~~~~~~l~~L~~L~L~~c~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~-~l~~L~~L~L~~c~~l~~l~l~~~~L~~ 544 (733)
......+++|++|++.++ .+.. +...++|++|++++|. +..++. .+++|+.|.+.++. ++...
T Consensus 179 ~~~~~~l~~L~~L~l~~n-~l~~-----~~~~~~L~~L~l~~n~-l~~~~~~~~~~L~~L~l~~n~-l~~~~-------- 242 (390)
T 3o6n_A 179 HVDLSLIPSLFHANVSYN-LLST-----LAIPIAVEELDASHNS-INVVRGPVNVELTILKLQHNN-LTDTA-------- 242 (390)
T ss_dssp BCCGGGCTTCSEEECCSS-CCSE-----EECCSSCSEEECCSSC-CCEEECCCCSSCCEEECCSSC-CCCCG--------
T ss_pred ccccccccccceeecccc-cccc-----cCCCCcceEEECCCCe-eeeccccccccccEEECCCCC-CcccH--------
Confidence 222233455555555552 2221 2234456666666553 233222 23455555554442 22110
Q ss_pred eecccCcCCceeeeccCccccccccccccHHHHHhcCCCCcEEeecCCCCCChhhhhhhcCCCCCCCccEEEeecCCCCc
Q 004729 545 IMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLT 624 (733)
Q Consensus 545 l~l~~c~~L~~L~l~~n~L~~l~~~~~~~L~~l~~~~~~L~~L~Ls~C~~lt~~~~~~~~~~~~l~~L~~L~L~~c~~L~ 624 (733)
.+..+++|+.|++++|.++.+... ....+++|+.|++++| .++... .....+++|+.|+|++| .++
T Consensus 243 -~l~~l~~L~~L~Ls~n~l~~~~~~-------~~~~l~~L~~L~L~~n-~l~~~~----~~~~~l~~L~~L~L~~n-~l~ 308 (390)
T 3o6n_A 243 -WLLNYPGLVEVDLSYNELEKIMYH-------PFVKMQRLERLYISNN-RLVALN----LYGQPIPTLKVLDLSHN-HLL 308 (390)
T ss_dssp -GGGGCTTCSEEECCSSCCCEEESG-------GGTTCSSCCEEECCSS-CCCEEE----CSSSCCTTCCEEECCSS-CCC
T ss_pred -HHcCCCCccEEECCCCcCCCcChh-------HccccccCCEEECCCC-cCcccC----cccCCCCCCCEEECCCC-cce
Confidence 145556666666666665544221 1124556666666663 444321 11234566666666665 344
Q ss_pred cccc---cCCCccEEeccccccccccc-cccccccEEeccc
Q 004729 625 VVRF---CSTSLVSLSLVGCRAITALE-LKCPILEKVCLDG 661 (733)
Q Consensus 625 ~~~~---~~~sL~~L~L~~c~~L~~l~-~~~p~L~~L~L~~ 661 (733)
.++. .+++|+.|++++++ ++.++ ..+++|++|++++
T Consensus 309 ~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~L~~L~l~~ 348 (390)
T 3o6n_A 309 HVERNQPQFDRLENLYLDHNS-IVTLKLSTHHTLKNLTLSH 348 (390)
T ss_dssp CCGGGHHHHTTCSEEECCSSC-CCCCCCCTTCCCSEEECCS
T ss_pred ecCccccccCcCCEEECCCCc-cceeCchhhccCCEEEcCC
Confidence 4332 34555555555532 33333 2345555555555
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.5e-18 Score=192.68 Aligned_cols=285 Identities=19% Similarity=0.206 Sum_probs=177.6
Q ss_pred CCCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEEeeccccchhc----ccCCCCcEEE
Q 004729 311 LRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVS----IRCPQLEHLS 386 (733)
Q Consensus 311 l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~i~----~~~~~L~~L~ 386 (733)
.++++.|+|++|.+....+..+..+++|++|+|++|.+....+..+..+++|++|++++|.+..++ ..+++|+.|+
T Consensus 31 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 110 (477)
T 2id5_A 31 PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLD 110 (477)
T ss_dssp CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEE
T ss_pred CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEE
Confidence 357999999999998766778889999999999999888766777788999999999999877654 4678999999
Q ss_pred EcCCchHH----HhhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCCCCCChhHHHHHHHhcccccccccccC
Q 004729 387 LKRSNMAQ----AVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYC 462 (733)
Q Consensus 387 L~~~~l~~----~~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~ 462 (733)
|++|.+.. .+..+++|++|+++++ .+.... ...+..+++|+.|+++++. ++.... ..+..+++|+.|++.++
T Consensus 111 Ls~n~i~~~~~~~~~~l~~L~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~l~~n~-l~~~~~-~~l~~l~~L~~L~l~~n 186 (477)
T 2id5_A 111 ISENKIVILLDYMFQDLYNLKSLEVGDN-DLVYIS-HRAFSGLNSLEQLTLEKCN-LTSIPT-EALSHLHGLIVLRLRHL 186 (477)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEEECCT-TCCEEC-TTSSTTCTTCCEEEEESCC-CSSCCH-HHHTTCTTCCEEEEESC
T ss_pred CCCCccccCChhHccccccCCEEECCCC-ccceeC-hhhccCCCCCCEEECCCCc-CcccCh-hHhcccCCCcEEeCCCC
Confidence 99887653 3667888999999884 344322 1234567888888888876 443222 22336777888877766
Q ss_pred CCCC---cCCCCCCCccEEEeCCCCCCchHHHHHhhCCCCcCEEEEecCCCCccccc----CCCCCcEEEeccccCCccc
Q 004729 463 PNIS---LESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSL----ELPRLQNIRLVHCRKFADL 535 (733)
Q Consensus 463 ~~l~---~~~~~l~~L~~L~L~~c~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~----~l~~L~~L~L~~c~~l~~l 535 (733)
.... .....+++|++|++++|..+..... ......+|++|++++|. ++.++. .+++|+.|++.++. ++.+
T Consensus 187 ~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~ 263 (477)
T 2id5_A 187 NINAIRDYSFKRLYRLKVLEISHWPYLDTMTP-NCLYGLNLTSLSITHCN-LTAVPYLAVRHLVYLRFLNLSYNP-ISTI 263 (477)
T ss_dssp CCCEECTTCSCSCTTCCEEEEECCTTCCEECT-TTTTTCCCSEEEEESSC-CCSCCHHHHTTCTTCCEEECCSSC-CCEE
T ss_pred cCcEeChhhcccCcccceeeCCCCccccccCc-ccccCccccEEECcCCc-ccccCHHHhcCccccCeeECCCCc-CCcc
Confidence 5221 1223566777777776543333221 12223467777776663 334431 24555555554432 2211
Q ss_pred cccccccceeecccCcCCceeeeccCccccccccccccHHHHHhcCCCCcEEeecCCCCCChhhhhhhcCCCCCCCccEE
Q 004729 536 NLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSL 615 (733)
Q Consensus 536 ~l~~~~L~~l~l~~c~~L~~L~l~~n~L~~l~~~~~~~L~~l~~~~~~L~~L~Ls~C~~lt~~~~~~~~~~~~l~~L~~L 615 (733)
... .+..+++|+.|++.+|.++.+.... +..+++|+.|+|++ +.++......| ..+++|+.|
T Consensus 264 ~~~-------~~~~l~~L~~L~L~~n~l~~~~~~~-------~~~l~~L~~L~L~~-N~l~~~~~~~~---~~l~~L~~L 325 (477)
T 2id5_A 264 EGS-------MLHELLRLQEIQLVGGQLAVVEPYA-------FRGLNYLRVLNVSG-NQLTTLEESVF---HSVGNLETL 325 (477)
T ss_dssp CTT-------SCTTCTTCCEEECCSSCCSEECTTT-------BTTCTTCCEEECCS-SCCSCCCGGGB---SCGGGCCEE
T ss_pred Chh-------hccccccCCEEECCCCccceECHHH-------hcCcccCCEEECCC-CcCceeCHhHc---CCCcccCEE
Confidence 110 1455566666666666655543221 12445666666666 35544333333 345566666
Q ss_pred EeecC
Q 004729 616 VLDNC 620 (733)
Q Consensus 616 ~L~~c 620 (733)
+|.++
T Consensus 326 ~l~~N 330 (477)
T 2id5_A 326 ILDSN 330 (477)
T ss_dssp ECCSS
T ss_pred EccCC
Confidence 66554
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.76 E-value=6.4e-18 Score=194.82 Aligned_cols=295 Identities=19% Similarity=0.173 Sum_probs=183.6
Q ss_pred CCCccEEEEcCCCchhHHHHHHhhcCCCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEE
Q 004729 286 YPNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRL 365 (733)
Q Consensus 286 ~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L 365 (733)
..+++.+++.+. .+.......+..+++|++|+|++|.+....+..+..+++|++|+|++|.+....+..+..+++|++|
T Consensus 50 l~~l~~l~l~~~-~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 50 LNNQKIVTFKNS-TMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GCCCSEEEESSC-EESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCC-CCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 457788888873 3444444556788999999999998887666678889999999999998887777777888999999
Q ss_pred Eeeccccchhc----ccCCCCcEEEEcCCchHH----HhhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCCC
Q 004729 366 EITKCRVMRVS----IRCPQLEHLSLKRSNMAQ----AVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCS 437 (733)
Q Consensus 366 ~L~~~~~~~i~----~~~~~L~~L~L~~~~l~~----~~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~ 437 (733)
++++|.+..++ ..+++|+.|+|++|.+.. .+..+++|++|+++++ .+.... ...+++|+.|+++++.
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~----~~~l~~L~~L~l~~n~ 203 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN-RLTHVD----LSLIPSLFHANVSYNL 203 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTS-CCSBCC----GGGCTTCSEEECCSSC
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCC-CCCCcC----hhhhhhhhhhhcccCc
Confidence 99999877554 457888888888876653 3566788888888875 454432 3457788888888765
Q ss_pred CCChhHHHHHHHhcccccccccccCCCCCcCCCCCCCccEEEeCCCCCCchHHHHHhhCCCCcCEEEEecCCCCccccc-
Q 004729 438 CVSDESLREIALSCANLRILNSSYCPNISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSL- 516 (733)
Q Consensus 438 ~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~~~l~~L~~L~L~~c~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~- 516 (733)
++... ..++|+.|+++++..........++|+.|+++++ .+++. ..+..+++|+.|+|++|......+.
T Consensus 204 -l~~l~------~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n-~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~ 273 (597)
T 3oja_B 204 -LSTLA------IPIAVEELDASHNSINVVRGPVNVELTILKLQHN-NLTDT--AWLLNYPGLVEVDLSYNELEKIMYHP 273 (597)
T ss_dssp -CSEEE------CCTTCSEEECCSSCCCEEECSCCSCCCEEECCSS-CCCCC--GGGGGCTTCSEEECCSSCCCEEESGG
T ss_pred -ccccc------CCchhheeeccCCcccccccccCCCCCEEECCCC-CCCCC--hhhccCCCCCEEECCCCccCCCCHHH
Confidence 43311 3356777877776643333334467788888774 34442 3566677777777777743222222
Q ss_pred --CCCCCcEEEeccccCCccccccccccceeecccCcCCceeeeccCccccccccccccHHHHHhcCCCCcEEeecCCCC
Q 004729 517 --ELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCES 594 (733)
Q Consensus 517 --~l~~L~~L~L~~c~~l~~l~l~~~~L~~l~l~~c~~L~~L~l~~n~L~~l~~~~~~~L~~l~~~~~~L~~L~Ls~C~~ 594 (733)
.+++|+.|.+.++ .++.+.. .+..+++|+.|++++|.+..+.. .+ ..+++|+.|+|++| .
T Consensus 274 ~~~l~~L~~L~Ls~N-~l~~l~~--------~~~~l~~L~~L~Ls~N~l~~i~~----~~----~~l~~L~~L~L~~N-~ 335 (597)
T 3oja_B 274 FVKMQRLERLYISNN-RLVALNL--------YGQPIPTLKVLDLSHNHLLHVER----NQ----PQFDRLENLYLDHN-S 335 (597)
T ss_dssp GTTCSSCCEEECTTS-CCCEEEC--------SSSCCTTCCEEECCSSCCCCCGG----GH----HHHTTCSEEECCSS-C
T ss_pred hcCccCCCEEECCCC-CCCCCCc--------ccccCCCCcEEECCCCCCCccCc----cc----ccCCCCCEEECCCC-C
Confidence 2345555555443 1221110 12334555555555555543311 11 13445555555553 3
Q ss_pred CChhhhhhhcCCCCCCCccEEEeecC
Q 004729 595 LTNSVCEVFSDGGGCPMLKSLVLDNC 620 (733)
Q Consensus 595 lt~~~~~~~~~~~~l~~L~~L~L~~c 620 (733)
++... ...+++|+.|+|+++
T Consensus 336 l~~~~------~~~~~~L~~L~l~~N 355 (597)
T 3oja_B 336 IVTLK------LSTHHTLKNLTLSHN 355 (597)
T ss_dssp CCCCC------CCTTCCCSEEECCSS
T ss_pred CCCcC------hhhcCCCCEEEeeCC
Confidence 33211 234455555555554
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=2.6e-17 Score=190.70 Aligned_cols=122 Identities=15% Similarity=0.114 Sum_probs=90.8
Q ss_pred CccEEEEcCCCchhHHHHHHhhcCCCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEEe
Q 004729 288 NATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEI 367 (733)
Q Consensus 288 ~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L 367 (733)
+++.|++++ +.+.......|..+++|++|+|++|.++...+.++..+++|++|+|++|.+....+..+..+++|++|++
T Consensus 53 ~~~~LdLs~-N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 53 STKNLDLSF-NPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TCCEEECTT-SCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred CCCEEEeeC-CCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence 578888887 4555555556778888888888888887555566778888888888888877655566677888888888
Q ss_pred eccccchhc----ccCCCCcEEEEcCCchH-----HHhhCCCCccEEEEecC
Q 004729 368 TKCRVMRVS----IRCPQLEHLSLKRSNMA-----QAVLNCPLLHLLDIASC 410 (733)
Q Consensus 368 ~~~~~~~i~----~~~~~L~~L~L~~~~l~-----~~~~~~~~L~~L~L~~c 410 (733)
++|.+..++ ..+++|+.|++++|.+. ..+..+++|++|+++++
T Consensus 132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N 183 (635)
T 4g8a_A 132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 183 (635)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS
T ss_pred CCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCc
Confidence 888776544 45778888888887653 34667788888888874
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.5e-17 Score=191.66 Aligned_cols=294 Identities=18% Similarity=0.190 Sum_probs=173.7
Q ss_pred cCCCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEEeeccccchhc----ccCCCCcEE
Q 004729 310 LLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVS----IRCPQLEHL 385 (733)
Q Consensus 310 ~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~i~----~~~~~L~~L 385 (733)
.+.+++.|+++++.+.......+..+++|++|+|++|.+....+..+..+++|++|+|++|.+..++ ..+++|+.|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 3578899999998877555555677899999999999887666656778888999998888765443 345666666
Q ss_pred EEcCCchHHH----hhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCCCCCChhHHHHHHHhccccccccccc
Q 004729 386 SLKRSNMAQA----VLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSY 461 (733)
Q Consensus 386 ~L~~~~l~~~----~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~ 461 (733)
+|++|.+..+ +..+++|++|+++++ .+.... +..+..+++|+.|+++++
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~-~~~~~~l~~L~~L~L~~N------------------------- 181 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNN-NLERIE-DDTFQATTSLQNLQLSSN------------------------- 181 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCC-TTTTTTCTTCCEEECTTS-------------------------
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCC-cCCCCC-hhhhhcCCcCcEEECcCC-------------------------
Confidence 6666554422 234555555555553 222211 112233444555555444
Q ss_pred CCCCCcCCCCCCCccEEEeCCCCCCchHHHHHhhCCCCcCEEEEecCCCCccccc-CCCCCcEEEeccccCCcccccccc
Q 004729 462 CPNISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSL-ELPRLQNIRLVHCRKFADLNLRAM 540 (733)
Q Consensus 462 ~~~l~~~~~~l~~L~~L~L~~c~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~-~l~~L~~L~L~~c~~l~~l~l~~~ 540 (733)
.........+++|+.|+++++ .+.. +...++|+.|++++|. +..++. ..++|+.|.+.++. ++...
T Consensus 182 -~l~~~~~~~l~~L~~L~l~~n-~l~~-----l~~~~~L~~L~ls~n~-l~~~~~~~~~~L~~L~L~~n~-l~~~~---- 248 (597)
T 3oja_B 182 -RLTHVDLSLIPSLFHANVSYN-LLST-----LAIPIAVEELDASHNS-INVVRGPVNVELTILKLQHNN-LTDTA---- 248 (597)
T ss_dssp -CCSBCCGGGCTTCSEEECCSS-CCSE-----EECCTTCSEEECCSSC-CCEEECSCCSCCCEEECCSSC-CCCCG----
T ss_pred -CCCCcChhhhhhhhhhhcccC-cccc-----ccCCchhheeeccCCc-ccccccccCCCCCEEECCCCC-CCCCh----
Confidence 322222334556666666653 2221 2334567777777664 333332 24566666666552 22211
Q ss_pred ccceeecccCcCCceeeeccCccccccccccccHHHHHhcCCCCcEEeecCCCCCChhhhhhhcCCCCCCCccEEEeecC
Q 004729 541 MLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNC 620 (733)
Q Consensus 541 ~L~~l~l~~c~~L~~L~l~~n~L~~l~~~~~~~L~~l~~~~~~L~~L~Ls~C~~lt~~~~~~~~~~~~l~~L~~L~L~~c 620 (733)
.+..+++|+.|++++|.+..+.+.. +..+++|+.|+|++ +.++... .....+++|+.|+|++|
T Consensus 249 -----~l~~l~~L~~L~Ls~N~l~~~~~~~-------~~~l~~L~~L~Ls~-N~l~~l~----~~~~~l~~L~~L~Ls~N 311 (597)
T 3oja_B 249 -----WLLNYPGLVEVDLSYNELEKIMYHP-------FVKMQRLERLYISN-NRLVALN----LYGQPIPTLKVLDLSHN 311 (597)
T ss_dssp -----GGGGCTTCSEEECCSSCCCEEESGG-------GTTCSSCCEEECTT-SCCCEEE----CSSSCCTTCCEEECCSS
T ss_pred -----hhccCCCCCEEECCCCccCCCCHHH-------hcCccCCCEEECCC-CCCCCCC----cccccCCCCcEEECCCC
Confidence 2566777777777777776653221 22566777888877 3555421 12245777777877776
Q ss_pred CCCccccc---cCCCccEEeccccccccccc-cccccccEEecccc
Q 004729 621 EGLTVVRF---CSTSLVSLSLVGCRAITALE-LKCPILEKVCLDGC 662 (733)
Q Consensus 621 ~~L~~~~~---~~~sL~~L~L~~c~~L~~l~-~~~p~L~~L~L~~c 662 (733)
.++.++. .+++|+.|+|++|. +..++ ..+++|++|+|+++
T Consensus 312 -~l~~i~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~L~~L~l~~N 355 (597)
T 3oja_B 312 -HLLHVERNQPQFDRLENLYLDHNS-IVTLKLSTHHTLKNLTLSHN 355 (597)
T ss_dssp -CCCCCGGGHHHHTTCSEEECCSSC-CCCCCCCTTCCCSEEECCSS
T ss_pred -CCCccCcccccCCCCCEEECCCCC-CCCcChhhcCCCCEEEeeCC
Confidence 3444443 46677777777743 44443 35677777777774
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.66 E-value=3.2e-16 Score=166.92 Aligned_cols=247 Identities=16% Similarity=0.274 Sum_probs=141.0
Q ss_pred CCCEEEecCccCChHHHHhccCC--CCCcEEEEecCcCCcccccccccCCCccEEEeeccccc-----hhcccCCCCcEE
Q 004729 313 NLEALTLGRGQLGDAFFHALADC--SMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVM-----RVSIRCPQLEHL 385 (733)
Q Consensus 313 ~L~~L~Ls~~~i~~~~~~~L~~~--~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~-----~i~~~~~~L~~L 385 (733)
.++.++++++.+.... +..+ ++++.|++.++.+....+.+ ..+++|++|++++|.+. .....+++|++|
T Consensus 48 ~~~~l~l~~~~~~~~~---~~~~~~~~l~~L~l~~n~l~~~~~~~-~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 48 LWQTLDLTGKNLHPDV---TGRLLSQGVIAFRCPRSFMDQPLAEH-FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp TSSEEECTTCBCCHHH---HHHHHHTTCSEEECTTCEECSCCCSC-CCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred hheeeccccccCCHHH---HHhhhhccceEEEcCCccccccchhh-ccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence 4788888888777433 3333 77888888888766554443 35677888887777543 123455666666
Q ss_pred EEcCCchH----HHhhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCCCCCChhHHHHHHHhcc-cccccccc
Q 004729 386 SLKRSNMA----QAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCA-NLRILNSS 460 (733)
Q Consensus 386 ~L~~~~l~----~~~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~-~L~~L~L~ 460 (733)
+++++.+. ..+..+++|++|++++|..+++..+...+..+++|++|++++|..+++..+......++ +|++|+++
T Consensus 124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~ 203 (336)
T 2ast_B 124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS 203 (336)
T ss_dssp ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECC
T ss_pred eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeC
Confidence 66665433 23445667777777766556665566666666777777777663466655555555565 55555555
Q ss_pred cCCCCCcCCCCCCCccEEEeCCCCCCchHH-HHHhhCCCCcCEEEEecCCCCcccc----cCCCCCcEEEeccccCCccc
Q 004729 461 YCPNISLESVRLPMLTVLQLHSCEGITSAS-MAAISHSYMLEVLELDNCNLLTSVS----LELPRLQNIRLVHCRKFADL 535 (733)
Q Consensus 461 ~~~~l~~~~~~l~~L~~L~L~~c~~l~~~~-~~~l~~~~~L~~L~L~~~~~l~~~~----~~l~~L~~L~L~~c~~l~~l 535 (733)
+|.. .+++.. ...+..+++|++|++++|..+++.. ..+++|+.|.+.+|..+.+.
T Consensus 204 ~~~~--------------------~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 263 (336)
T 2ast_B 204 GYRK--------------------NLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPE 263 (336)
T ss_dssp SCGG--------------------GSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGG
T ss_pred CCcc--------------------cCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHH
Confidence 5430 233222 2223345555555555554332211 12455555555555444333
Q ss_pred cccccccceeecccCcCCceeeeccCccccccccccccHHHHHhcCCCCcEEeecCCCCCChhhhh
Q 004729 536 NLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCE 601 (733)
Q Consensus 536 ~l~~~~L~~l~l~~c~~L~~L~l~~n~L~~l~~~~~~~L~~l~~~~~~L~~L~Ls~C~~lt~~~~~ 601 (733)
.+.. +.++++|+.|++.++ + ..+.+..+...++.|+ ++ |+.++...+.
T Consensus 264 ~~~~-------l~~~~~L~~L~l~~~-i------~~~~~~~l~~~l~~L~---l~-~n~l~~~~~~ 311 (336)
T 2ast_B 264 TLLE-------LGEIPTLKTLQVFGI-V------PDGTLQLLKEALPHLQ---IN-CSHFTTIARP 311 (336)
T ss_dssp GGGG-------GGGCTTCCEEECTTS-S------CTTCHHHHHHHSTTSE---ES-CCCSCCTTCS
T ss_pred HHHH-------HhcCCCCCEEeccCc-c------CHHHHHHHHhhCcceE---Ee-cccCccccCC
Confidence 3322 466788888888877 2 3345566655566655 54 4677765443
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.61 E-value=5.3e-16 Score=165.17 Aligned_cols=173 Identities=12% Similarity=0.122 Sum_probs=90.1
Q ss_pred CCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEEeeccccchhccc-CCCCcEEEEcCC
Q 004729 312 RNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIR-CPQLEHLSLKRS 390 (733)
Q Consensus 312 ~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~i~~~-~~~L~~L~L~~~ 390 (733)
++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|++|++++|.+..++.. .++|++|+++++
T Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~L~~L~l~~n 133 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELRIHDN 133 (332)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCCTTCCEEECCSS
T ss_pred CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCccccccCCEEECCCC
Confidence 4666677766666644444566666777777766666654455555666666666666665544422 134555555444
Q ss_pred chHHHhhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCCCCCChhHH-HHHHHhcccccccccccCCCCCcCC
Q 004729 391 NMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESL-REIALSCANLRILNSSYCPNISLES 469 (733)
Q Consensus 391 ~l~~~~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~l-~~l~~~~~~L~~L~L~~~~~l~~~~ 469 (733)
.+..+ . ...+..+++|+.|+++++. ++.... ...+..+ +|+.|+++++.......
T Consensus 134 ~i~~~---------------------~-~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~ 189 (332)
T 2ft3_A 134 RIRKV---------------------P-KGVFSGLRNMNCIEMGGNP-LENSGFEPGAFDGL-KLNYLRISEAKLTGIPK 189 (332)
T ss_dssp CCCCC---------------------C-SGGGSSCSSCCEEECCSCC-CBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCS
T ss_pred ccCcc---------------------C-HhHhCCCccCCEEECCCCc-cccCCCCcccccCC-ccCEEECcCCCCCccCc
Confidence 33211 1 1123344555555555543 221100 0001112 55666665554222222
Q ss_pred CCCCCccEEEeCCCCCCchHHHHHhhCCCCcCEEEEecCC
Q 004729 470 VRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCN 509 (733)
Q Consensus 470 ~~l~~L~~L~L~~c~~l~~~~~~~l~~~~~L~~L~L~~~~ 509 (733)
.-.++|++|++++ +.+.......+..+++|++|++++|.
T Consensus 190 ~~~~~L~~L~l~~-n~i~~~~~~~l~~l~~L~~L~L~~N~ 228 (332)
T 2ft3_A 190 DLPETLNELHLDH-NKIQAIELEDLLRYSKLYRLGLGHNQ 228 (332)
T ss_dssp SSCSSCSCCBCCS-SCCCCCCTTSSTTCTTCSCCBCCSSC
T ss_pred cccCCCCEEECCC-CcCCccCHHHhcCCCCCCEEECCCCc
Confidence 2235677777776 34555444456667777777777763
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=4.1e-15 Score=158.09 Aligned_cols=175 Identities=13% Similarity=0.094 Sum_probs=92.9
Q ss_pred CCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEEeeccccchhcccCCCCcEEEEcCCc
Q 004729 312 RNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIRCPQLEHLSLKRSN 391 (733)
Q Consensus 312 ~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~i~~~~~~L~~L~L~~~~ 391 (733)
++|++|++++|.++......+..+++|++|++++|.+....+..+..+++|++|++++|.+..++..
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~------------- 118 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEK------------- 118 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSS-------------
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChh-------------
Confidence 4555666666555543333455556666666666555544344444555555555555544433321
Q ss_pred hHHHhhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCCCCCChhH-HHHHHHhcccccccccccCCCCCcCCC
Q 004729 392 MAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDES-LREIALSCANLRILNSSYCPNISLESV 470 (733)
Q Consensus 392 l~~~~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~-l~~l~~~~~~L~~L~L~~~~~l~~~~~ 470 (733)
.+++|++|+++++ .+.... ...+..+++|+.|+++++. ++... ....+..+++|+.|+++++........
T Consensus 119 ------~~~~L~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~ 189 (330)
T 1xku_A 119 ------MPKTLQELRVHEN-EITKVR-KSVFNGLNQMIVVELGTNP-LKSSGIENGAFQGMKKLSYIRIADTNITTIPQG 189 (330)
T ss_dssp ------CCTTCCEEECCSS-CCCBBC-HHHHTTCTTCCEEECCSSC-CCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSS
T ss_pred ------hcccccEEECCCC-cccccC-HhHhcCCccccEEECCCCc-CCccCcChhhccCCCCcCEEECCCCccccCCcc
Confidence 1245566666553 233221 2234556666666666655 32211 111223456666666666543222222
Q ss_pred CCCCccEEEeCCCCCCchHHHHHhhCCCCcCEEEEecCC
Q 004729 471 RLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCN 509 (733)
Q Consensus 471 ~l~~L~~L~L~~c~~l~~~~~~~l~~~~~L~~L~L~~~~ 509 (733)
..++|++|+++++ .+.......+..+++|++|++++|.
T Consensus 190 ~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~ 227 (330)
T 1xku_A 190 LPPSLTELHLDGN-KITKVDAASLKGLNNLAKLGLSFNS 227 (330)
T ss_dssp CCTTCSEEECTTS-CCCEECTGGGTTCTTCCEEECCSSC
T ss_pred ccccCCEEECCCC-cCCccCHHHhcCCCCCCEEECCCCc
Confidence 3367888888774 4655555566777788888887764
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.4e-16 Score=168.65 Aligned_cols=158 Identities=19% Similarity=0.206 Sum_probs=101.3
Q ss_pred chhHHHHHHhhcCCCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEEeeccccchhccc
Q 004729 299 AIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIR 378 (733)
Q Consensus 299 ~~~~~~~~~l~~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~i~~~ 378 (733)
.+.......+..+++|++|+|++|.++...+..+..+++|++|++++|.+....+ ...+++|++|++++|.+..+. .
T Consensus 21 ~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~-~ 97 (317)
T 3o53_A 21 SLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-V 97 (317)
T ss_dssp THHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE-E
T ss_pred chhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc-C
Confidence 3444444455577889999999998887777788889999999999988765443 567888999999888776555 3
Q ss_pred CCCCcEEEEcCCchHHH-hhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCCCCCChhHHHHHHHhccccccc
Q 004729 379 CPQLEHLSLKRSNMAQA-VLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRIL 457 (733)
Q Consensus 379 ~~~L~~L~L~~~~l~~~-~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L 457 (733)
.++|+.|++++|.+..+ ...+++|++|+++++ .+.... ...+..+++|+.|+++++. ++......+...+++|++|
T Consensus 98 ~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N-~l~~~~-~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L 174 (317)
T 3o53_A 98 GPSIETLHAANNNISRVSCSRGQGKKNIYLANN-KITMLR-DLDEGCRSRVQYLDLKLNE-IDTVNFAELAASSDTLEHL 174 (317)
T ss_dssp CTTCCEEECCSSCCSEEEECCCSSCEEEECCSS-CCCSGG-GBCTGGGSSEEEEECTTSC-CCEEEGGGGGGGTTTCCEE
T ss_pred CCCcCEEECCCCccCCcCccccCCCCEEECCCC-CCCCcc-chhhhccCCCCEEECCCCC-CCcccHHHHhhccCcCCEE
Confidence 47788888877766543 234666777777764 344321 1123345666777766655 4433222222234444444
Q ss_pred ccccC
Q 004729 458 NSSYC 462 (733)
Q Consensus 458 ~L~~~ 462 (733)
+++++
T Consensus 175 ~L~~N 179 (317)
T 3o53_A 175 NLQYN 179 (317)
T ss_dssp ECTTS
T ss_pred ECCCC
Confidence 44443
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.58 E-value=2.7e-15 Score=159.66 Aligned_cols=167 Identities=13% Similarity=0.108 Sum_probs=96.2
Q ss_pred CCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEEeeccccchhcccCCCCcEEEEcCCch
Q 004729 313 NLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIRCPQLEHLSLKRSNM 392 (733)
Q Consensus 313 ~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~i~~~~~~L~~L~L~~~~l 392 (733)
+++.++++++.+. .++..+ .++|++|+++++.+....+..+..+++|++|++++|.+..+.
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~---------------- 94 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIH---------------- 94 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEEC----------------
T ss_pred cCCEEECCCCCcc-ccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccC----------------
Confidence 5667777666554 222222 356777777766655444444555666666666665443221
Q ss_pred HHHhhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCCCCCChhHHHHHHHhcccccccccccCCCC----CcC
Q 004729 393 AQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNI----SLE 468 (733)
Q Consensus 393 ~~~~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~~l----~~~ 468 (733)
...+..+++|++|+++++ .+.... . ...++|++|+++++. ++... ...+..+++|+.|+++++... ...
T Consensus 95 ~~~~~~l~~L~~L~L~~n-~l~~l~--~--~~~~~L~~L~l~~n~-i~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 167 (332)
T 2ft3_A 95 EKAFSPLRKLQKLYISKN-HLVEIP--P--NLPSSLVELRIHDNR-IRKVP-KGVFSGLRNMNCIEMGGNPLENSGFEPG 167 (332)
T ss_dssp GGGSTTCTTCCEEECCSS-CCCSCC--S--SCCTTCCEEECCSSC-CCCCC-SGGGSSCSSCCEEECCSCCCBGGGSCTT
T ss_pred HhHhhCcCCCCEEECCCC-cCCccC--c--cccccCCEEECCCCc-cCccC-HhHhCCCccCCEEECCCCccccCCCCcc
Confidence 122445666777777664 333211 1 112689999999876 44321 122346899999999987642 222
Q ss_pred CCCCCCccEEEeCCCCCCchHHHHHhhCCCCcCEEEEecCC
Q 004729 469 SVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCN 509 (733)
Q Consensus 469 ~~~l~~L~~L~L~~c~~l~~~~~~~l~~~~~L~~L~L~~~~ 509 (733)
.....+|++|+++++ .++.... .-.++|++|++++|.
T Consensus 168 ~~~~l~L~~L~l~~n-~l~~l~~---~~~~~L~~L~l~~n~ 204 (332)
T 2ft3_A 168 AFDGLKLNYLRISEA-KLTGIPK---DLPETLNELHLDHNK 204 (332)
T ss_dssp SSCSCCCSCCBCCSS-BCSSCCS---SSCSSCSCCBCCSSC
T ss_pred cccCCccCEEECcCC-CCCccCc---cccCCCCEEECCCCc
Confidence 222228999999984 3443211 123689999999884
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.7e-14 Score=165.50 Aligned_cols=190 Identities=21% Similarity=0.167 Sum_probs=112.7
Q ss_pred CCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEEeeccccchhcccCCCCcEEEEcCCc
Q 004729 312 RNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIRCPQLEHLSLKRSN 391 (733)
Q Consensus 312 ~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~i~~~~~~L~~L~L~~~~ 391 (733)
.+++.|+++++.++ .++..+. ++|++|++++|.+.. + ...+++|++|++++|.+..++..+++|+.|++++|.
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~~-l---p~~l~~L~~L~Ls~N~l~~lp~~l~~L~~L~Ls~N~ 112 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-L---PALPPELRTLEVSGNQLTSLPVLPPGLLELSIFSNP 112 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCSC-C---CCCCTTCCEEEECSCCCSCCCCCCTTCCEEEECSCC
T ss_pred CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCCC-C---CCcCCCCCEEEcCCCcCCcCCCCCCCCCEEECcCCc
Confidence 46899999998887 4444332 789999999997763 2 236789999999999888887788888888888887
Q ss_pred hHHHhhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCCCCCChhHHHHHHHhcccccccccccCCCCCcCCCC
Q 004729 392 MAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNISLESVR 471 (733)
Q Consensus 392 l~~~~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~~~ 471 (733)
+..+...+++|++|+++++ .+... ...+++|++|++++|. ++. ++ ...++|+.|.+.++...... ..
T Consensus 113 l~~l~~~l~~L~~L~L~~N-~l~~l-----p~~l~~L~~L~Ls~N~-l~~--l~---~~~~~L~~L~L~~N~l~~l~-~~ 179 (622)
T 3g06_A 113 LTHLPALPSGLCKLWIFGN-QLTSL-----PVLPPGLQELSVSDNQ-LAS--LP---ALPSELCKLWAYNNQLTSLP-ML 179 (622)
T ss_dssp CCCCCCCCTTCCEEECCSS-CCSCC-----CCCCTTCCEEECCSSC-CSC--CC---CCCTTCCEEECCSSCCSCCC-CC
T ss_pred CCCCCCCCCCcCEEECCCC-CCCcC-----CCCCCCCCEEECcCCc-CCC--cC---CccCCCCEEECCCCCCCCCc-cc
Confidence 7665556777888888774 34431 1234677777777665 322 11 12345555555554422211 33
Q ss_pred CCCccEEEeCCCCCCchHHHHHhhCCCCcCEEEEecCCCCcccccCCCCCcEEEec
Q 004729 472 LPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLV 527 (733)
Q Consensus 472 l~~L~~L~L~~c~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~l~~L~~L~L~ 527 (733)
+++|+.|+++++ .++... ...++|+.|++++| .++.++..+++|+.|.+.
T Consensus 180 ~~~L~~L~Ls~N-~l~~l~----~~~~~L~~L~L~~N-~l~~l~~~~~~L~~L~Ls 229 (622)
T 3g06_A 180 PSGLQELSVSDN-QLASLP----TLPSELYKLWAYNN-RLTSLPALPSGLKELIVS 229 (622)
T ss_dssp CTTCCEEECCSS-CCSCCC----CCCTTCCEEECCSS-CCSSCCCCCTTCCEEECC
T ss_pred CCCCcEEECCCC-CCCCCC----CccchhhEEECcCC-cccccCCCCCCCCEEEcc
Confidence 455555555552 222210 11344555555544 233333333444444443
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.56 E-value=2e-13 Score=156.65 Aligned_cols=253 Identities=17% Similarity=0.128 Sum_probs=186.8
Q ss_pred CCCcEEeccCCCCCChhHHHHHHHhcccccccccccCCCCCcCCCCCCCccEEEeCCCCCCchHHHHHhhCCCCcCEEEE
Q 004729 426 PQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLEL 505 (733)
Q Consensus 426 ~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~~~l~~L~~L~L~~c~~l~~~~~~~l~~~~~L~~L~L 505 (733)
.+++.|+++++. ++. ++.. -.++|+.|+++++....... .+++|++|+++++ .++.... .+++|++|++
T Consensus 40 ~~l~~L~ls~n~-L~~--lp~~--l~~~L~~L~L~~N~l~~lp~-~l~~L~~L~Ls~N-~l~~lp~----~l~~L~~L~L 108 (622)
T 3g06_A 40 NGNAVLNVGESG-LTT--LPDC--LPAHITTLVIPDNNLTSLPA-LPPELRTLEVSGN-QLTSLPV----LPPGLLELSI 108 (622)
T ss_dssp HCCCEEECCSSC-CSC--CCSC--CCTTCSEEEECSCCCSCCCC-CCTTCCEEEECSC-CCSCCCC----CCTTCCEEEE
T ss_pred CCCcEEEecCCC-cCc--cChh--hCCCCcEEEecCCCCCCCCC-cCCCCCEEEcCCC-cCCcCCC----CCCCCCEEEC
Confidence 368999998876 432 1111 12689999999886332222 6789999999985 3543221 5788999999
Q ss_pred ecCCCCcccccCCCCCcEEEeccccCCccccccccccceeecccCcCCceeeeccCccccccccccccHHHHHhcCCCCc
Q 004729 506 DNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQ 585 (733)
Q Consensus 506 ~~~~~l~~~~~~l~~L~~L~L~~c~~l~~l~l~~~~L~~l~l~~c~~L~~L~l~~n~L~~l~~~~~~~L~~l~~~~~~L~ 585 (733)
++| .++.++..+++|+.|.+.++. ++.+. ..+++|+.|++++|.++.+.. .+++|+
T Consensus 109 s~N-~l~~l~~~l~~L~~L~L~~N~-l~~lp-----------~~l~~L~~L~Ls~N~l~~l~~-----------~~~~L~ 164 (622)
T 3g06_A 109 FSN-PLTHLPALPSGLCKLWIFGNQ-LTSLP-----------VLPPGLQELSVSDNQLASLPA-----------LPSELC 164 (622)
T ss_dssp CSC-CCCCCCCCCTTCCEEECCSSC-CSCCC-----------CCCTTCCEEECCSSCCSCCCC-----------CCTTCC
T ss_pred cCC-cCCCCCCCCCCcCEEECCCCC-CCcCC-----------CCCCCCCEEECcCCcCCCcCC-----------ccCCCC
Confidence 988 466677677888888887652 33321 124889999999998876531 346899
Q ss_pred EEeecCCCCCChhhhhhhcCCCCCCCccEEEeecCCCCccccccCCCccEEeccccccccccccccccccEEeccccccc
Q 004729 586 EVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRFCSTSLVSLSLVGCRAITALELKCPILEKVCLDGCDHI 665 (733)
Q Consensus 586 ~L~Ls~C~~lt~~~~~~~~~~~~l~~L~~L~L~~c~~L~~~~~~~~sL~~L~L~~c~~L~~l~~~~p~L~~L~L~~c~~L 665 (733)
.|++++ +.++. ++ ..+++|+.|++++| .++.++..+++|+.|+++++ .++.++..+++|++|+++++ .+
T Consensus 165 ~L~L~~-N~l~~-----l~--~~~~~L~~L~Ls~N-~l~~l~~~~~~L~~L~L~~N-~l~~l~~~~~~L~~L~Ls~N-~L 233 (622)
T 3g06_A 165 KLWAYN-NQLTS-----LP--MLPSGLQELSVSDN-QLASLPTLPSELYKLWAYNN-RLTSLPALPSGLKELIVSGN-RL 233 (622)
T ss_dssp EEECCS-SCCSC-----CC--CCCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSS-CCSSCCCCCTTCCEEECCSS-CC
T ss_pred EEECCC-CCCCC-----Cc--ccCCCCcEEECCCC-CCCCCCCccchhhEEECcCC-cccccCCCCCCCCEEEccCC-cc
Confidence 999998 46664 22 45789999999887 57777777889999999984 67777777799999999984 67
Q ss_pred ccccccccCCcEEEecCCCCccccccCcccccEEEecCCCCCCcc---CCCCCCccEEeccCcc
Q 004729 666 ESASFVPVALQSLNLGICPKLSTLGIEALHMVVLELKGCGVLSDA---YINCPLLTSLDASFCR 726 (733)
Q Consensus 666 ~~~~~~~~~L~~L~L~~c~~L~~l~~~~~~L~~L~l~~c~~L~~~---~~~~p~L~~L~l~~C~ 726 (733)
+.+...+.+|+.|+++++ +|+.++....+|+.|++++|. |+.+ ..++++|+.|++++++
T Consensus 234 ~~lp~~l~~L~~L~Ls~N-~L~~lp~~~~~L~~L~Ls~N~-L~~lp~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 234 TSLPVLPSELKELMVSGN-RLTSLPMLPSGLLSLSVYRNQ-LTRLPESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp SCCCCCCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSSC-CCSCCGGGGGSCTTCEEECCSCC
T ss_pred CcCCCCCCcCcEEECCCC-CCCcCCcccccCcEEeCCCCC-CCcCCHHHhhccccCEEEecCCC
Confidence 766555678999999998 588888866689999999975 3333 2378999999999886
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.54 E-value=9e-15 Score=157.00 Aligned_cols=258 Identities=14% Similarity=0.107 Sum_probs=120.0
Q ss_pred CCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEEeeccccchhcccCCCCcEEEEcCCc
Q 004729 312 RNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIRCPQLEHLSLKRSN 391 (733)
Q Consensus 312 ~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~i~~~~~~L~~L~L~~~~ 391 (733)
++|++|++++|.++......+..+++|++|++++|.+....+..+..+++|++|++++|.+..++.
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-------------- 117 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSS-------------- 117 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCH--------------
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCH--------------
Confidence 356666666666654333345566666666666665554434444455556666655554432221
Q ss_pred hHHHhhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCCCCCChhHHHHHHHhcccccccccccCCCC---CcC
Q 004729 392 MAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNI---SLE 468 (733)
Q Consensus 392 l~~~~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~~l---~~~ 468 (733)
..+..+++|++|+++++ .+........+..+++|+.|+++++..++.... ..+..+++|++|+++++... +..
T Consensus 118 --~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~ 193 (353)
T 2z80_A 118 --SWFKPLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQR-KDFAGLTFLEELEIDASDLQSYEPKS 193 (353)
T ss_dssp --HHHTTCTTCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECT-TTTTTCCEEEEEEEEETTCCEECTTT
T ss_pred --hHhCCCccCCEEECCCC-CCcccCchhhhccCCCCcEEECCCCccccccCH-HHccCCCCCCEEECCCCCcCccCHHH
Confidence 11333444444444442 222111001223344555555544421221110 11113455555555544311 122
Q ss_pred CCCCCCccEEEeCCCCCCchHHHHHhhCCCCcCEEEEecCCCCcccccCCCCCcEEEeccccCCccccccccccceeecc
Q 004729 469 SVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAMMLSSIMVS 548 (733)
Q Consensus 469 ~~~l~~L~~L~L~~c~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~l~~L~~L~L~~c~~l~~l~l~~~~L~~l~l~ 548 (733)
...+++|++|+++++ .+.......+..+++|++|++++|. ++..+.. .+. ...
T Consensus 194 l~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~--~l~-----------------------~~~ 246 (353)
T 2z80_A 194 LKSIQNVSHLILHMK-QHILLLEIFVDVTSSVECLELRDTD-LDTFHFS--ELS-----------------------TGE 246 (353)
T ss_dssp TTTCSEEEEEEEECS-CSTTHHHHHHHHTTTEEEEEEESCB-CTTCCCC-------------------------------
T ss_pred HhccccCCeecCCCC-ccccchhhhhhhcccccEEECCCCc-ccccccc--ccc-----------------------ccc
Confidence 335667777777763 3554444444556777777777663 2222110 000 012
Q ss_pred cCcCCceeeeccCccccccccccccHHHHHhcCCCCcEEeecCCCCCChhhhhhhcCCCCCCCccEEEeecCC
Q 004729 549 NCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCE 621 (733)
Q Consensus 549 ~c~~L~~L~l~~n~L~~l~~~~~~~L~~l~~~~~~L~~L~Ls~C~~lt~~~~~~~~~~~~l~~L~~L~L~~c~ 621 (733)
.++.++.+++..+.+....+ ..+......+++|+.|++++| .++......| +.+++|+.|+|++++
T Consensus 247 ~~~~l~~l~L~~~~l~~~~l---~~l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~---~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 247 TNSLIKKFTFRNVKITDESL---FQVMKLLNQISGLLELEFSRN-QLKSVPDGIF---DRLTSLQKIWLHTNP 312 (353)
T ss_dssp CCCCCCEEEEESCBCCHHHH---HHHHHHHHTCTTCCEEECCSS-CCCCCCTTTT---TTCTTCCEEECCSSC
T ss_pred ccchhhccccccccccCcch---hhhHHHHhcccCCCEEECCCC-CCCccCHHHH---hcCCCCCEEEeeCCC
Confidence 23444555555544432211 122233346777888888773 5653222212 456777777777764
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=4.7e-14 Score=149.85 Aligned_cols=264 Identities=17% Similarity=0.175 Sum_probs=152.8
Q ss_pred CCccEEEEcCCCchhHHHHHHhhcCCCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEE
Q 004729 287 PNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLE 366 (733)
Q Consensus 287 ~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~ 366 (733)
++++.|++++. .+.......+..+++|++|+|++|.+....+..+..+++|++|++++|.+...... .+++|++|+
T Consensus 52 ~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~---~~~~L~~L~ 127 (330)
T 1xku_A 52 PDTALLDLQNN-KITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEK---MPKTLQELR 127 (330)
T ss_dssp TTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSS---CCTTCCEEE
T ss_pred CCCeEEECCCC-cCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChh---hcccccEEE
Confidence 57899999884 45544445678899999999999999876677888999999999999987743222 237899999
Q ss_pred eeccccchhc----ccCCCCcEEEEcCCchH------HHhhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCC
Q 004729 367 ITKCRVMRVS----IRCPQLEHLSLKRSNMA------QAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNC 436 (733)
Q Consensus 367 L~~~~~~~i~----~~~~~L~~L~L~~~~l~------~~~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~ 436 (733)
+++|.+..+. ..+++|+.|+++++.+. ..+..+++|++|+++++ .+.... . ...++|+.|+++++
T Consensus 128 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n-~l~~l~--~--~~~~~L~~L~l~~n 202 (330)
T 1xku_A 128 VHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT-NITTIP--Q--GLPPSLTELHLDGN 202 (330)
T ss_dssp CCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSS-CCCSCC--S--SCCTTCSEEECTTS
T ss_pred CCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCC-ccccCC--c--cccccCCEEECCCC
Confidence 9998765433 34566666666665442 12344555555555553 222111 0 01134455555444
Q ss_pred CCCChhHHHHHHHhcccccccccccCCCCCcCCCCCCCccEEEeCCCCCCchHHHHHhhCCCCcCEEEEecCCCCccccc
Q 004729 437 SCVSDESLREIALSCANLRILNSSYCPNISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSL 516 (733)
Q Consensus 437 ~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~~~l~~L~~L~L~~c~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~ 516 (733)
. ++... ......+++|++|++++ +.+.......+..+++|++|++++|. ++.+|.
T Consensus 203 ~-l~~~~----------------------~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~lp~ 257 (330)
T 1xku_A 203 K-ITKVD----------------------AASLKGLNNLAKLGLSF-NSISAVDNGSLANTPHLRELHLNNNK-LVKVPG 257 (330)
T ss_dssp C-CCEEC----------------------TGGGTTCTTCCEEECCS-SCCCEECTTTGGGSTTCCEEECCSSC-CSSCCT
T ss_pred c-CCccC----------------------HHHhcCCCCCCEEECCC-CcCceeChhhccCCCCCCEEECCCCc-CccCCh
Confidence 3 22211 11222455666666666 33444433445566667777776663 344443
Q ss_pred C---CCCCcEEEeccccCCcccccccccccee-ecccCcCCceeeeccCccccccccccccHHHHHhcCCCCcEEeecCC
Q 004729 517 E---LPRLQNIRLVHCRKFADLNLRAMMLSSI-MVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDC 592 (733)
Q Consensus 517 ~---l~~L~~L~L~~c~~l~~l~l~~~~L~~l-~l~~c~~L~~L~l~~n~L~~l~~~~~~~L~~l~~~~~~L~~L~Ls~C 592 (733)
. +++|+.|.+.++. ++.+.... +... .....+.|+.+++.+|.+....+.. ..+..+++|+.++++++
T Consensus 258 ~l~~l~~L~~L~l~~N~-i~~~~~~~--f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~-----~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 258 GLADHKYIQVVYLHNNN-ISAIGSND--FCPPGYNTKKASYSGVSLFSNPVQYWEIQP-----STFRCVYVRAAVQLGNY 329 (330)
T ss_dssp TTTTCSSCCEEECCSSC-CCCCCTTS--SSCSSCCTTSCCCSEEECCSSSSCGGGSCG-----GGGTTCCCGGGEEC---
T ss_pred hhccCCCcCEEECCCCc-CCccChhh--cCCcccccccccccceEeecCcccccccCc-----cccccccceeEEEeccc
Confidence 2 4566666665542 33222111 0000 0123467888899999886543221 12335678999999874
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.50 E-value=9.3e-15 Score=155.23 Aligned_cols=214 Identities=17% Similarity=0.210 Sum_probs=124.9
Q ss_pred hCCCccEEEEcCCCchhHHHHHHhhcCCCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccE
Q 004729 285 RYPNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRR 364 (733)
Q Consensus 285 ~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~ 364 (733)
..++++.|++.+.. +.. ++..+..+++|++|+|++|.+. .++..+..+++|++|+|++|.+. .++.....+++|++
T Consensus 79 ~~~~l~~L~L~~n~-l~~-lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~ 154 (328)
T 4fcg_A 79 TQPGRVALELRSVP-LPQ-FPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRE 154 (328)
T ss_dssp TSTTCCEEEEESSC-CSS-CCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCE
T ss_pred cccceeEEEccCCC-chh-cChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCE
Confidence 34678888887743 332 2334566788888888888777 56666777888888888888776 55555667788888
Q ss_pred EEeeccccch-hcccCCCCcEEEEcCCchHHHhhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCCCCCChhH
Q 004729 365 LEITKCRVMR-VSIRCPQLEHLSLKRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDES 443 (733)
Q Consensus 365 L~L~~~~~~~-i~~~~~~L~~L~L~~~~l~~~~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~ 443 (733)
|++++|.... ++.. +....+ ...+..+++|++|+++++ .+.. ++..+..+++|+.|+++++. ++.
T Consensus 155 L~L~~n~~~~~~p~~---~~~~~~-----~~~~~~l~~L~~L~L~~n-~l~~--lp~~l~~l~~L~~L~L~~N~-l~~-- 220 (328)
T 4fcg_A 155 LSIRACPELTELPEP---LASTDA-----SGEHQGLVNLQSLRLEWT-GIRS--LPASIANLQNLKSLKIRNSP-LSA-- 220 (328)
T ss_dssp EEEEEETTCCCCCSC---SEEEC------CCCEEESTTCCEEEEEEE-CCCC--CCGGGGGCTTCCEEEEESSC-CCC--
T ss_pred EECCCCCCccccChh---Hhhccc-----hhhhccCCCCCEEECcCC-CcCc--chHhhcCCCCCCEEEccCCC-CCc--
Confidence 8888765432 1111 111111 011234666677776664 3432 22335566777777777665 332
Q ss_pred HHHHHHhcccccccccccCCCC---CcCCCCCCCccEEEeCCCCCCchHHHHHhhCCCCcCEEEEecCCCCcccccC
Q 004729 444 LREIALSCANLRILNSSYCPNI---SLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLE 517 (733)
Q Consensus 444 l~~l~~~~~~L~~L~L~~~~~l---~~~~~~l~~L~~L~L~~c~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~ 517 (733)
+...+..+++|+.|++++|... +.....+++|++|++++|.... .....+..+++|++|+|++|..+..+|..
T Consensus 221 l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~-~~p~~~~~l~~L~~L~L~~n~~~~~iP~~ 296 (328)
T 4fcg_A 221 LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL-TLPLDIHRLTQLEKLDLRGCVNLSRLPSL 296 (328)
T ss_dssp CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCC-BCCTTGGGCTTCCEEECTTCTTCCCCCGG
T ss_pred CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchh-hcchhhhcCCCCCEEeCCCCCchhhccHH
Confidence 1111235566666666665422 2233456777777777754333 22234566677777777777666655543
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.50 E-value=1.4e-13 Score=149.53 Aligned_cols=40 Identities=8% Similarity=0.116 Sum_probs=23.4
Q ss_pred ccCcCCceeeeccCccccccccccccHHHHHhcCCCCcEEeecC
Q 004729 548 SNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTD 591 (733)
Q Consensus 548 ~~c~~L~~L~l~~n~L~~l~~~~~~~L~~l~~~~~~L~~L~Ls~ 591 (733)
.++++|+.|++.+|.++... ..+..+...+++++.+.+..
T Consensus 300 ~~l~~L~~L~l~~N~l~~~~----~~~~~l~~~l~~~~~~~l~~ 339 (386)
T 2ca6_A 300 EKMPDLLFLELNGNRFSEED----DVVDEIREVFSTRGRGELDE 339 (386)
T ss_dssp HHCTTCCEEECTTSBSCTTS----HHHHHHHHHHHHHTCCEECC
T ss_pred hcCCCceEEEccCCcCCcch----hHHHHHHHHhhhcCcchhhh
Confidence 45788888888888876432 11334444455555555543
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=99.50 E-value=2e-15 Score=159.30 Aligned_cols=122 Identities=13% Similarity=0.193 Sum_probs=72.6
Q ss_pred CCccEEEEcCCCchhH--HHHHHhhcCCCCCEEEecC-ccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCcc
Q 004729 287 PNATEVNIYGAPAIHL--LVMKAVSLLRNLEALTLGR-GQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLR 363 (733)
Q Consensus 287 ~~L~~L~L~~~~~~~~--~~~~~l~~l~~L~~L~Ls~-~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~ 363 (733)
.+++.|++++.. +.. ..+..+..+++|++|++++ +.+....+..+.++++|++|++++|.+...++..+..+++|+
T Consensus 50 ~~l~~L~L~~~~-l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLN-LPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCC-CSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCC-ccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 467777777632 332 2334566777777777773 666555566667777777777777776655555566677777
Q ss_pred EEEeeccccch----hcccCCCCcEEEEcCCchH----HHhhCCC-CccEEEEec
Q 004729 364 RLEITKCRVMR----VSIRCPQLEHLSLKRSNMA----QAVLNCP-LLHLLDIAS 409 (733)
Q Consensus 364 ~L~L~~~~~~~----i~~~~~~L~~L~L~~~~l~----~~~~~~~-~L~~L~L~~ 409 (733)
+|++++|.+.. ....+++|++|++++|.+. ..+..++ +|++|++++
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~ 183 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISR 183 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCS
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcC
Confidence 77777766541 1234555666666555443 1233343 555555554
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.48 E-value=2.3e-13 Score=147.82 Aligned_cols=180 Identities=19% Similarity=0.289 Sum_probs=90.1
Q ss_pred HHHhhCCCccEEEEcCCCchhHHHHHH----hhcCCCCCEEEecCccCC---hHHH-------HhccCCCCCcEEEEecC
Q 004729 281 DVCQRYPNATEVNIYGAPAIHLLVMKA----VSLLRNLEALTLGRGQLG---DAFF-------HALADCSMLKSLNVNDA 346 (733)
Q Consensus 281 ~~~~~~~~L~~L~L~~~~~~~~~~~~~----l~~l~~L~~L~Ls~~~i~---~~~~-------~~L~~~~~L~~L~L~~~ 346 (733)
..+...++++.|+++++ .+....... +..+++|++|+|+++.+. ...+ ..+..+++|++|+|++|
T Consensus 26 ~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n 104 (386)
T 2ca6_A 26 AVLLEDDSVKEIVLSGN-TIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN 104 (386)
T ss_dssp HHHHHCSCCCEEECTTS-EECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC
T ss_pred HHHhcCCCccEEECCCC-CCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCC
Confidence 34455666777777664 333332222 446677777777665322 2222 22356677777777777
Q ss_pred cCCc----ccccccccCCCccEEEeeccccch-----hc---ccC---------CCCcEEEEcCCchH--------HHhh
Q 004729 347 TLGN----GVQEIPINHDQLRRLEITKCRVMR-----VS---IRC---------PQLEHLSLKRSNMA--------QAVL 397 (733)
Q Consensus 347 ~l~~----~~~~~~~~~~~L~~L~L~~~~~~~-----i~---~~~---------~~L~~L~L~~~~l~--------~~~~ 397 (733)
.+.. .++.....+++|++|++++|.+.. +. ..+ ++|+.|++++|.+. ..+.
T Consensus 105 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~ 184 (386)
T 2ca6_A 105 AFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ 184 (386)
T ss_dssp CCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHH
Confidence 6655 234444556666666666665431 11 111 55555555555432 1233
Q ss_pred CCCCccEEEEecCCCCChHHHHH----HHhcCCCCcEEeccCCCCCChhHHHHH---HHhcccccccccccCC
Q 004729 398 NCPLLHLLDIASCHKLSDAAIRL----AATSCPQLESLDMSNCSCVSDESLREI---ALSCANLRILNSSYCP 463 (733)
Q Consensus 398 ~~~~L~~L~L~~c~~l~~~~l~~----l~~~~~~L~~L~L~~~~~l~~~~l~~l---~~~~~~L~~L~L~~~~ 463 (733)
.+++|++|++++| .+.+.++.. .+..+++|+.|+|++|. +++.+...+ +..+++|++|++++|.
T Consensus 185 ~~~~L~~L~L~~n-~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~-l~~~g~~~l~~~l~~~~~L~~L~L~~n~ 255 (386)
T 2ca6_A 185 SHRLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDNT-FTHLGSSALAIALKSWPNLRELGLNDCL 255 (386)
T ss_dssp HCTTCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSSC-CHHHHHHHHHHHGGGCTTCCEEECTTCC
T ss_pred hCCCcCEEECcCC-CCCHhHHHHHHHHHhhcCCCccEEECcCCC-CCcHHHHHHHHHHccCCCcCEEECCCCC
Confidence 4555666666554 344443222 22345556666665554 443332222 2233444444444443
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.2e-13 Score=148.10 Aligned_cols=222 Identities=14% Similarity=0.097 Sum_probs=164.7
Q ss_pred CCccEEEEcCCCchhHHHHHHhhcCCCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEE
Q 004729 287 PNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLE 366 (733)
Q Consensus 287 ~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~ 366 (733)
++++.|++++. .+.......+..+++|++|++++|.++...+..+..+++|++|++++|.+..........+++|++|+
T Consensus 52 ~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 130 (353)
T 2z80_A 52 EAVKSLDLSNN-RITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLN 130 (353)
T ss_dssp TTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEE
T ss_pred ccCcEEECCCC-cCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEE
Confidence 57999999884 34444444678899999999999999876667788999999999999998866666577899999999
Q ss_pred eeccccchhc-----ccCCCCcEEEEcCCc-hH----HHhhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCC
Q 004729 367 ITKCRVMRVS-----IRCPQLEHLSLKRSN-MA----QAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNC 436 (733)
Q Consensus 367 L~~~~~~~i~-----~~~~~L~~L~L~~~~-l~----~~~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~ 436 (733)
+++|.+..++ ..+++|+.|++++|. +. ..+..+++|++|+++++ .+.... +..+..+++|++|+++++
T Consensus 131 L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~-~~~l~~l~~L~~L~l~~n 208 (353)
T 2z80_A 131 LLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS-DLQSYE-PKSLKSIQNVSHLILHMK 208 (353)
T ss_dssp CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET-TCCEEC-TTTTTTCSEEEEEEEECS
T ss_pred CCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCC-CcCccC-HHHHhccccCCeecCCCC
Confidence 9999877654 368999999999873 33 34677899999999996 354321 234567889999999998
Q ss_pred CCCChhHHHHHHHhcccccccccccCCCCCcCC------CCCCCccEEEeCCCCCCchHHH----HHhhCCCCcCEEEEe
Q 004729 437 SCVSDESLREIALSCANLRILNSSYCPNISLES------VRLPMLTVLQLHSCEGITSASM----AAISHSYMLEVLELD 506 (733)
Q Consensus 437 ~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~------~~l~~L~~L~L~~c~~l~~~~~----~~l~~~~~L~~L~L~ 506 (733)
. ++. ........+++|+.|+++++....... ...+.++.+++.++ .+.+..+ ..+..+++|++|+++
T Consensus 209 ~-l~~-~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~-~l~~~~l~~l~~~l~~l~~L~~L~Ls 285 (353)
T 2z80_A 209 Q-HIL-LLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNV-KITDESLFQVMKLLNQISGLLELEFS 285 (353)
T ss_dssp C-STT-HHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESC-BCCHHHHHHHHHHHHTCTTCCEEECC
T ss_pred c-ccc-chhhhhhhcccccEEECCCCccccccccccccccccchhhccccccc-cccCcchhhhHHHHhcccCCCEEECC
Confidence 7 443 233444568999999999876332211 13567888888884 4665433 345678889999998
Q ss_pred cCCCCcccc
Q 004729 507 NCNLLTSVS 515 (733)
Q Consensus 507 ~~~~l~~~~ 515 (733)
+|. ++.++
T Consensus 286 ~N~-l~~i~ 293 (353)
T 2z80_A 286 RNQ-LKSVP 293 (353)
T ss_dssp SSC-CCCCC
T ss_pred CCC-CCccC
Confidence 874 33433
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=99.46 E-value=1.9e-14 Score=151.86 Aligned_cols=245 Identities=17% Similarity=0.162 Sum_probs=147.9
Q ss_pred CCCCEEEecCccCCh--HHHHhccCCCCCcEEEEec-CcCCcccccccccCCCccEEEeeccccc-hh---cccCCCCcE
Q 004729 312 RNLEALTLGRGQLGD--AFFHALADCSMLKSLNVND-ATLGNGVQEIPINHDQLRRLEITKCRVM-RV---SIRCPQLEH 384 (733)
Q Consensus 312 ~~L~~L~Ls~~~i~~--~~~~~L~~~~~L~~L~L~~-~~l~~~~~~~~~~~~~L~~L~L~~~~~~-~i---~~~~~~L~~ 384 (733)
.++++|+|+++.+.. ..+..+..+++|++|++++ +.+...++..+..+++|++|++++|.+. .+ ...+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 578999999999987 6778889999999999995 7777777777788999999999998775 22 245677777
Q ss_pred EEEcCCchH----HHhhCCCCccEEEEecCCCCChHHHHHHHhcCC-CCcEEeccCCCCCChhHHHHHHHhccccccccc
Q 004729 385 LSLKRSNMA----QAVLNCPLLHLLDIASCHKLSDAAIRLAATSCP-QLESLDMSNCSCVSDESLREIALSCANLRILNS 459 (733)
Q Consensus 385 L~L~~~~l~----~~~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~-~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L 459 (733)
|++++|.+. ..+..+++|++|+++++ .+... ++..+..++ +|+.|+++++. ++.
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~-~p~~l~~l~~~L~~L~L~~N~-l~~------------------ 188 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGN-RISGA-IPDSYGSFSKLFTSMTISRNR-LTG------------------ 188 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSS-CCEEE-CCGGGGCCCTTCCEEECCSSE-EEE------------------
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCC-cccCc-CCHHHhhhhhcCcEEECcCCe-eec------------------
Confidence 777776544 23455666666666653 23211 111223333 55555555543 111
Q ss_pred ccCCCCCcCCCCCCCccEEEeCCCCCCchHHHHHhhCCCCcCEEEEecCCCCcccccCCCCCcEEEeccccCCccccccc
Q 004729 460 SYCPNISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRA 539 (733)
Q Consensus 460 ~~~~~l~~~~~~l~~L~~L~L~~c~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~l~~L~~L~L~~c~~l~~l~l~~ 539 (733)
.++.....++ |++|+++++ .+.......+..+++|+.|++++|......+.
T Consensus 189 ----~~~~~~~~l~-L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~----------------------- 239 (313)
T 1ogq_A 189 ----KIPPTFANLN-LAFVDLSRN-MLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK----------------------- 239 (313)
T ss_dssp ----ECCGGGGGCC-CSEEECCSS-EEEECCGGGCCTTSCCSEEECCSSEECCBGGG-----------------------
T ss_pred ----cCChHHhCCc-ccEEECcCC-cccCcCCHHHhcCCCCCEEECCCCceeeecCc-----------------------
Confidence 1111122233 777777773 45544445667788888888887742211111
Q ss_pred cccceeecccCcCCceeeeccCccccccccccccHHHHHhcCCCCcEEeecCCCCCChhhhhhhcCCCCCCCccEEEeec
Q 004729 540 MMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDN 619 (733)
Q Consensus 540 ~~L~~l~l~~c~~L~~L~l~~n~L~~l~~~~~~~L~~l~~~~~~L~~L~Ls~C~~lt~~~~~~~~~~~~l~~L~~L~L~~ 619 (733)
+..+++|+.|++++|.++...+. ....+++|+.|++++| .++.. ++..+.+++|+.|++.+
T Consensus 240 -------~~~l~~L~~L~Ls~N~l~~~~p~-------~l~~l~~L~~L~Ls~N-~l~~~----ip~~~~l~~L~~l~l~~ 300 (313)
T 1ogq_A 240 -------VGLSKNLNGLDLRNNRIYGTLPQ-------GLTQLKFLHSLNVSFN-NLCGE----IPQGGNLQRFDVSAYAN 300 (313)
T ss_dssp -------CCCCTTCCEEECCSSCCEECCCG-------GGGGCTTCCEEECCSS-EEEEE----CCCSTTGGGSCGGGTCS
T ss_pred -------ccccCCCCEEECcCCcccCcCCh-------HHhcCcCCCEEECcCC-ccccc----CCCCccccccChHHhcC
Confidence 23345666666666666533211 1224567777777773 55432 22235567777777777
Q ss_pred CCCCcc
Q 004729 620 CEGLTV 625 (733)
Q Consensus 620 c~~L~~ 625 (733)
++.+..
T Consensus 301 N~~lc~ 306 (313)
T 1ogq_A 301 NKCLCG 306 (313)
T ss_dssp SSEEES
T ss_pred CCCccC
Confidence 665544
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.46 E-value=2.1e-14 Score=152.52 Aligned_cols=219 Identities=22% Similarity=0.265 Sum_probs=140.0
Q ss_pred CCeeEEeeCCCCCCHHHHHHHHhhCCCccEEEEcCCCchhHHHHHHhhcCCCCCEEEecCccCChHHHHhccCCCCCcEE
Q 004729 262 DFWRCLNFENRKISVEQFEDVCQRYPNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSL 341 (733)
Q Consensus 262 ~lw~~l~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L 341 (733)
.-.+.+++....+. .+...+..+++|+.|++++.. +. .++..+..+++|++|+|++|.+. .++..+..+++|++|
T Consensus 81 ~~l~~L~L~~n~l~--~lp~~l~~l~~L~~L~L~~n~-l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L 155 (328)
T 4fcg_A 81 PGRVALELRSVPLP--QFPDQAFRLSHLQHMTIDAAG-LM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLREL 155 (328)
T ss_dssp TTCCEEEEESSCCS--SCCSCGGGGTTCSEEEEESSC-CC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEE
T ss_pred cceeEEEccCCCch--hcChhhhhCCCCCEEECCCCC-cc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEE
Confidence 34466777665544 233334457899999999853 43 33456788999999999999998 667788999999999
Q ss_pred EEecCcCCcccccccc---------cCCCccEEEeeccccchhcccCCCCcEEEEcCCchHHHhhCCCCccEEEEecCCC
Q 004729 342 NVNDATLGNGVQEIPI---------NHDQLRRLEITKCRVMRVSIRCPQLEHLSLKRSNMAQAVLNCPLLHLLDIASCHK 412 (733)
Q Consensus 342 ~L~~~~l~~~~~~~~~---------~~~~L~~L~L~~~~~~~i~~~~~~L~~L~L~~~~l~~~~~~~~~L~~L~L~~c~~ 412 (733)
++++|.....++.... .+++|++|++++|.+..++ ..+..+++|++|+++++ .
T Consensus 156 ~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp-----------------~~l~~l~~L~~L~L~~N-~ 217 (328)
T 4fcg_A 156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLP-----------------ASIANLQNLKSLKIRNS-P 217 (328)
T ss_dssp EEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCC-----------------GGGGGCTTCCEEEEESS-C
T ss_pred ECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcch-----------------HhhcCCCCCCEEEccCC-C
Confidence 9999876655544332 3777777777777654332 22344556666666654 2
Q ss_pred CChHHHHHHHhcCCCCcEEeccCCCCCChhHHHHHHHhcccccccccccCCCC---CcCCCCCCCccEEEeCCCCCCchH
Q 004729 413 LSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNI---SLESVRLPMLTVLQLHSCEGITSA 489 (733)
Q Consensus 413 l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~~l---~~~~~~l~~L~~L~L~~c~~l~~~ 489 (733)
+.. ++..+..+++|+.|++++|.... . ++..+..+++|+.|++++|... +.....+++|++|++++|.... .
T Consensus 218 l~~--l~~~l~~l~~L~~L~Ls~n~~~~-~-~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~-~ 292 (328)
T 4fcg_A 218 LSA--LGPAIHHLPKLEELDLRGCTALR-N-YPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLS-R 292 (328)
T ss_dssp CCC--CCGGGGGCTTCCEEECTTCTTCC-B-CCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCC-C
T ss_pred CCc--CchhhccCCCCCEEECcCCcchh-h-hHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchh-h
Confidence 332 11234556667777776655221 1 1112225667777777776532 2334467888888888865443 3
Q ss_pred HHHHhhCCCCcCEEEEecC
Q 004729 490 SMAAISHSYMLEVLELDNC 508 (733)
Q Consensus 490 ~~~~l~~~~~L~~L~L~~~ 508 (733)
.+..++.+++|+.+++..+
T Consensus 293 iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 293 LPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp CCGGGGGSCTTCEEECCGG
T ss_pred ccHHHhhccCceEEeCCHH
Confidence 3456778888888877653
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.46 E-value=8.4e-15 Score=154.81 Aligned_cols=184 Identities=15% Similarity=0.155 Sum_probs=109.1
Q ss_pred CCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEEeeccccchh--cccCCCCcEEEEcCCc
Q 004729 314 LEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRV--SIRCPQLEHLSLKRSN 391 (733)
Q Consensus 314 L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~i--~~~~~~L~~L~L~~~~ 391 (733)
++.++++.+.+.......+..+++|++|++++|.+....+..+..+++|++|++++|.+... ...+++|+.|++++|.
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~ 91 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNY 91 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSSE
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCCc
Confidence 44555666666655555556788999999999998877666778899999999999876533 2456677777777665
Q ss_pred hHHHhhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCCCCCChhHHHHHHHhcccccccccccCCCCCcCCCC
Q 004729 392 MAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNISLESVR 471 (733)
Q Consensus 392 l~~~~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~~~ 471 (733)
+..+. ..++|++|+++++ .+.... ...+++|+.|+++++. ++.. .......
T Consensus 92 l~~l~-~~~~L~~L~l~~n-~l~~~~----~~~~~~L~~L~l~~N~-l~~~----------------------~~~~~~~ 142 (317)
T 3o53_A 92 VQELL-VGPSIETLHAANN-NISRVS----CSRGQGKKNIYLANNK-ITML----------------------RDLDEGC 142 (317)
T ss_dssp EEEEE-ECTTCCEEECCSS-CCSEEE----ECCCSSCEEEECCSSC-CCSG----------------------GGBCTGG
T ss_pred ccccc-CCCCcCEEECCCC-ccCCcC----ccccCCCCEEECCCCC-CCCc----------------------cchhhhc
Confidence 54322 3355666666553 233221 1123445555554443 2111 0112234
Q ss_pred CCCccEEEeCCCCCCchHHHHHh-hCCCCcCEEEEecCCCCcccccC--CCCCcEEEecc
Q 004729 472 LPMLTVLQLHSCEGITSASMAAI-SHSYMLEVLELDNCNLLTSVSLE--LPRLQNIRLVH 528 (733)
Q Consensus 472 l~~L~~L~L~~c~~l~~~~~~~l-~~~~~L~~L~L~~~~~l~~~~~~--l~~L~~L~L~~ 528 (733)
+++|++|+++++ .+.......+ ..+++|++|++++|. ++.++.. +++|+.|++.+
T Consensus 143 l~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~l~~L~~L~Ls~ 200 (317)
T 3o53_A 143 RSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYNF-IYDVKGQVVFAKLKTLDLSS 200 (317)
T ss_dssp GSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTSC-CCEEECCCCCTTCCEEECCS
T ss_pred cCCCCEEECCCC-CCCcccHHHHhhccCcCCEEECCCCc-CcccccccccccCCEEECCC
Confidence 677888888773 4555444444 357888888888874 3333221 34444444443
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.46 E-value=8.3e-14 Score=154.74 Aligned_cols=217 Identities=17% Similarity=0.163 Sum_probs=126.4
Q ss_pred CCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEEeeccccchhc----ccCCCCcEEEE
Q 004729 312 RNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVS----IRCPQLEHLSL 387 (733)
Q Consensus 312 ~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~i~----~~~~~L~~L~L 387 (733)
+++++|+|++|.+....+..+..+++|++|+|++|.+....+..+..+++|++|+|++|.+..++ ..+++|+.|+|
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 56788888888777655666777888888888888776655556667778888888877765443 34667777777
Q ss_pred cCCchHH----HhhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCCCCCChhHHHHHHHhcccccccccccCC
Q 004729 388 KRSNMAQ----AVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCP 463 (733)
Q Consensus 388 ~~~~l~~----~~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~ 463 (733)
++|.+.. .+..+++|++|++++|..+.... ...+..+++|+.|+++++. ++..
T Consensus 155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~-~~~~~~l~~L~~L~L~~n~-l~~~--------------------- 211 (452)
T 3zyi_A 155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYIS-EGAFEGLFNLKYLNLGMCN-IKDM--------------------- 211 (452)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEEC-TTTTTTCTTCCEEECTTSC-CSSC---------------------
T ss_pred CCCCcceeCHhHHhcCCcccEEeCCCCCCccccC-hhhccCCCCCCEEECCCCc-cccc---------------------
Confidence 7665543 24456677777776655444322 1123445666666666554 2211
Q ss_pred CCCcCCCCCCCccEEEeCCCCCCchHHHHHhhCCCCcCEEEEecCCCCccccc----CCCCCcEEEeccccCCccccccc
Q 004729 464 NISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSL----ELPRLQNIRLVHCRKFADLNLRA 539 (733)
Q Consensus 464 ~l~~~~~~l~~L~~L~L~~c~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~----~l~~L~~L~L~~c~~l~~l~l~~ 539 (733)
.....+++|++|++++ +.+.......+..+++|+.|++++|.. ..++. .+++|+.|++.++ .++.+...
T Consensus 212 ---~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~- 284 (452)
T 3zyi_A 212 ---PNLTPLVGLEELEMSG-NHFPEIRPGSFHGLSSLKKLWVMNSQV-SLIERNAFDGLASLVELNLAHN-NLSSLPHD- 284 (452)
T ss_dssp ---CCCTTCTTCCEEECTT-SCCSEECGGGGTTCTTCCEEECTTSCC-CEECTTTTTTCTTCCEEECCSS-CCSCCCTT-
T ss_pred ---ccccccccccEEECcC-CcCcccCcccccCccCCCEEEeCCCcC-ceECHHHhcCCCCCCEEECCCC-cCCccChH-
Confidence 0122455666666665 334444444555666666666666532 22221 2455555555544 22222111
Q ss_pred cccceeecccCcCCceeeeccCccc
Q 004729 540 MMLSSIMVSNCAALHRINITSNSLQ 564 (733)
Q Consensus 540 ~~L~~l~l~~c~~L~~L~l~~n~L~ 564 (733)
.+..+++|+.|++.+|.+.
T Consensus 285 ------~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 285 ------LFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp ------SSTTCTTCCEEECCSSCEE
T ss_pred ------HhccccCCCEEEccCCCcC
Confidence 1455677777777777654
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.45 E-value=8e-14 Score=154.30 Aligned_cols=217 Identities=18% Similarity=0.215 Sum_probs=119.6
Q ss_pred CCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEEeeccccchhc----ccCCCCcEEEE
Q 004729 312 RNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVS----IRCPQLEHLSL 387 (733)
Q Consensus 312 ~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~i~----~~~~~L~~L~L 387 (733)
++++.|+|++|.+.......+..+++|++|+|++|.+.......+..+++|++|+|++|.+..++ ..+++|+.|+|
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 46777777777776555556667777777777777766555455566777777777777665443 34566666666
Q ss_pred cCCchHH----HhhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCCCCCChhHHHHHHHhcccccccccccCC
Q 004729 388 KRSNMAQ----AVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCP 463 (733)
Q Consensus 388 ~~~~l~~----~~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~ 463 (733)
++|.+.. .+..+++|++|+++++..+.... ...+..+++|+.|+++++. ++.. +
T Consensus 144 ~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~-~~~~~~l~~L~~L~L~~n~-l~~~--~------------------ 201 (440)
T 3zyj_A 144 RNNPIESIPSYAFNRIPSLRRLDLGELKRLSYIS-EGAFEGLSNLRYLNLAMCN-LREI--P------------------ 201 (440)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEEC-TTTTTTCSSCCEEECTTSC-CSSC--C------------------
T ss_pred CCCcccccCHHHhhhCcccCEeCCCCCCCcceeC-cchhhcccccCeecCCCCc-Cccc--c------------------
Confidence 6665542 24556677777776655443322 1123456666666666654 2211 0
Q ss_pred CCCcCCCCCCCccEEEeCCCCCCchHHHHHhhCCCCcCEEEEecCCCCccccc----CCCCCcEEEeccccCCccccccc
Q 004729 464 NISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSL----ELPRLQNIRLVHCRKFADLNLRA 539 (733)
Q Consensus 464 ~l~~~~~~l~~L~~L~L~~c~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~----~l~~L~~L~L~~c~~l~~l~l~~ 539 (733)
....+++|++|+++++ .++......+..+++|++|++++|. +..++. .+++|+.|++.++ .++.+...
T Consensus 202 ----~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~- 273 (440)
T 3zyj_A 202 ----NLTPLIKLDELDLSGN-HLSAIRPGSFQGLMHLQKLWMIQSQ-IQVIERNAFDNLQSLVEINLAHN-NLTLLPHD- 273 (440)
T ss_dssp ----CCTTCSSCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTCC-CCEECTTSSTTCTTCCEEECTTS-CCCCCCTT-
T ss_pred ----ccCCCcccCEEECCCC-ccCccChhhhccCccCCEEECCCCc-eeEEChhhhcCCCCCCEEECCCC-CCCccChh-
Confidence 1223455555555552 3444433445555556666665553 222221 1345555555443 22222111
Q ss_pred cccceeecccCcCCceeeeccCccc
Q 004729 540 MMLSSIMVSNCAALHRINITSNSLQ 564 (733)
Q Consensus 540 ~~L~~l~l~~c~~L~~L~l~~n~L~ 564 (733)
.+..+++|+.|++.+|.+.
T Consensus 274 ------~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 274 ------LFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp ------TTSSCTTCCEEECCSSCEE
T ss_pred ------HhccccCCCEEEcCCCCcc
Confidence 1455677777777777664
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.43 E-value=7.9e-14 Score=154.95 Aligned_cols=215 Identities=20% Similarity=0.185 Sum_probs=153.0
Q ss_pred CCccEEEEcCCCchhHHHHHHhhcCCCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEE
Q 004729 287 PNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLE 366 (733)
Q Consensus 287 ~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~ 366 (733)
++++.|++++ ..+.......+..+++|++|+|++|.+....+..+..+++|++|+|++|.+.......+..+++|++|+
T Consensus 75 ~~l~~L~L~~-n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 153 (452)
T 3zyi_A 75 SNTRYLNLME-NNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELW 153 (452)
T ss_dssp TTCSEEECCS-SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEE
T ss_pred CCccEEECcC-CcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEE
Confidence 5789999988 445555556778999999999999999877677888999999999999998876667778899999999
Q ss_pred eeccccchhc----ccCCCCcEEEEcCCc-hH----HHhhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCCC
Q 004729 367 ITKCRVMRVS----IRCPQLEHLSLKRSN-MA----QAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCS 437 (733)
Q Consensus 367 L~~~~~~~i~----~~~~~L~~L~L~~~~-l~----~~~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~ 437 (733)
+++|.+..++ ..+++|+.|+++++. +. ..+..+++|++|+++++ .+.... .+..+++|+.|+++++.
T Consensus 154 L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~---~~~~l~~L~~L~Ls~N~ 229 (452)
T 3zyi_A 154 LRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC-NIKDMP---NLTPLVGLEELEMSGNH 229 (452)
T ss_dssp CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTS-CCSSCC---CCTTCTTCCEEECTTSC
T ss_pred CCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCC-cccccc---cccccccccEEECcCCc
Confidence 9999987654 468999999999843 22 23668999999999996 455432 24567889999999876
Q ss_pred CCChhHHHHHHHhcccccccccccCCCCC---cCCCCCCCccEEEeCCCCCCchHHHHHhhCCCCcCEEEEecCC
Q 004729 438 CVSDESLREIALSCANLRILNSSYCPNIS---LESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCN 509 (733)
Q Consensus 438 ~l~~~~l~~l~~~~~~L~~L~L~~~~~l~---~~~~~l~~L~~L~L~~c~~l~~~~~~~l~~~~~L~~L~L~~~~ 509 (733)
++..... .+..+++|+.|+++++.... .....+++|++|++++ +.++......+..+++|+.|+|++|.
T Consensus 230 -l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 230 -FPEIRPG-SFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAH-NNLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp -CSEECGG-GGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS-SCCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred -CcccCcc-cccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCC-CcCCccChHHhccccCCCEEEccCCC
Confidence 4432221 22355677777776654221 1223456666666666 34444443444555666666666553
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.43 E-value=8.9e-14 Score=153.93 Aligned_cols=215 Identities=20% Similarity=0.207 Sum_probs=153.4
Q ss_pred CCccEEEEcCCCchhHHHHHHhhcCCCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEE
Q 004729 287 PNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLE 366 (733)
Q Consensus 287 ~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~ 366 (733)
++++.|++++. .+.......+..+++|++|+|++|.+....+..+..+++|++|+|++|.+.......+..+++|++|+
T Consensus 64 ~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 142 (440)
T 3zyj_A 64 TNTRLLNLHEN-QIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELW 142 (440)
T ss_dssp TTCSEEECCSC-CCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEE
T ss_pred CCCcEEEccCC-cCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceee
Confidence 57899999884 45555556678999999999999999877677888999999999999998876666778899999999
Q ss_pred eeccccchhc----ccCCCCcEEEEcCCc-hH----HHhhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCCC
Q 004729 367 ITKCRVMRVS----IRCPQLEHLSLKRSN-MA----QAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCS 437 (733)
Q Consensus 367 L~~~~~~~i~----~~~~~L~~L~L~~~~-l~----~~~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~ 437 (733)
+++|.+..++ ..+++|+.|+++++. +. ..+..+++|++|+++++ .+.... .+..+++|+.|+++++.
T Consensus 143 L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~---~~~~l~~L~~L~Ls~N~ 218 (440)
T 3zyj_A 143 LRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC-NLREIP---NLTPLIKLDELDLSGNH 218 (440)
T ss_dssp CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTS-CCSSCC---CCTTCSSCCEEECTTSC
T ss_pred CCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCC-cCcccc---ccCCCcccCEEECCCCc
Confidence 9999887554 468999999999843 22 24678999999999996 455332 24567889999998876
Q ss_pred CCChhHHHHHHHhcccccccccccCCCCC---cCCCCCCCccEEEeCCCCCCchHHHHHhhCCCCcCEEEEecCC
Q 004729 438 CVSDESLREIALSCANLRILNSSYCPNIS---LESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCN 509 (733)
Q Consensus 438 ~l~~~~l~~l~~~~~~L~~L~L~~~~~l~---~~~~~l~~L~~L~L~~c~~l~~~~~~~l~~~~~L~~L~L~~~~ 509 (733)
++..... .+..+++|+.|+++++.... .....+++|++|+|++ +.++......+..+++|+.|+|++|.
T Consensus 219 -l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 219 -LSAIRPG-SFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAH-NNLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp -CCEECTT-TTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTT-SCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred -cCccChh-hhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCC-CCCCccChhHhccccCCCEEEcCCCC
Confidence 5432211 22255677777776654221 1223556666666666 34554444445556666666666654
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.42 E-value=7.5e-14 Score=156.48 Aligned_cols=191 Identities=19% Similarity=0.199 Sum_probs=125.1
Q ss_pred cCCCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEEeeccccchhcccCCCCcEEEEcC
Q 004729 310 LLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIRCPQLEHLSLKR 389 (733)
Q Consensus 310 ~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~i~~~~~~L~~L~L~~ 389 (733)
.+++|++|+|++|.+....+..+..+++|++|+|++|.+....+ +..+++|++|++++|.+..++. .++|+.|++++
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-~~~L~~L~L~~ 108 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-GPSIETLHAAN 108 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-CTTCCEEECCS
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-CCCcCEEECcC
Confidence 34588999999888887666778888999999999888775444 6678889999998887766553 37888888888
Q ss_pred CchHHH-hhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCCCCCChhHHHHHHHhcccccccccccCCCCCc-
Q 004729 390 SNMAQA-VLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNISL- 467 (733)
Q Consensus 390 ~~l~~~-~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~- 467 (733)
|.+..+ ...+++|+.|+++++ .+.... +..+..+++|+.|+++++. ++......+...+++|+.|+++++.....
T Consensus 109 N~l~~~~~~~l~~L~~L~L~~N-~l~~~~-~~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~ 185 (487)
T 3oja_A 109 NNISRVSCSRGQGKKNIYLANN-KITMLR-DLDEGCRSRVQYLDLKLNE-IDTVNFAELAASSDTLEHLNLQYNFIYDVK 185 (487)
T ss_dssp SCCCCEEECCCSSCEEEECCSS-CCCSGG-GBCGGGGSSEEEEECTTSC-CCEEEGGGGGGGTTTCCEEECTTSCCCEEE
T ss_pred CcCCCCCccccCCCCEEECCCC-CCCCCC-chhhcCCCCCCEEECCCCC-CCCcChHHHhhhCCcccEEecCCCcccccc
Confidence 776543 335678888888875 344321 2233456788888888776 55444444433566777777776652221
Q ss_pred CCCCCCCccEEEeCCCCCCchHHHHHhhCCCCcCEEEEecC
Q 004729 468 ESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNC 508 (733)
Q Consensus 468 ~~~~l~~L~~L~L~~c~~l~~~~~~~l~~~~~L~~L~L~~~ 508 (733)
....+++|+.|+++++ .++.... .+..+++|+.|++++|
T Consensus 186 ~~~~l~~L~~L~Ls~N-~l~~~~~-~~~~l~~L~~L~Ls~N 224 (487)
T 3oja_A 186 GQVVFAKLKTLDLSSN-KLAFMGP-EFQSAAGVTWISLRNN 224 (487)
T ss_dssp CCCCCTTCCEEECCSS-CCCEECG-GGGGGTTCSEEECTTS
T ss_pred ccccCCCCCEEECCCC-CCCCCCH-hHcCCCCccEEEecCC
Confidence 1224666666666663 3443322 2445566666666665
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.41 E-value=2.5e-13 Score=146.22 Aligned_cols=131 Identities=17% Similarity=0.189 Sum_probs=60.5
Q ss_pred HHHHHhhcCCCCCEEEecCccCChHHH----HhccCCC-CCcEEEEecCcCCccccccccc-----CCCccEEEeecccc
Q 004729 303 LVMKAVSLLRNLEALTLGRGQLGDAFF----HALADCS-MLKSLNVNDATLGNGVQEIPIN-----HDQLRRLEITKCRV 372 (733)
Q Consensus 303 ~~~~~l~~l~~L~~L~Ls~~~i~~~~~----~~L~~~~-~L~~L~L~~~~l~~~~~~~~~~-----~~~L~~L~L~~~~~ 372 (733)
..+..+...++|++|+|++|.+++..+ ..+..++ +|++|+|++|.+.......... +++|++|++++|.+
T Consensus 13 ~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l 92 (362)
T 3goz_A 13 PVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFL 92 (362)
T ss_dssp HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCG
T ss_pred HHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcC
Confidence 333334444556666666666654433 4555565 6666666666555432221111 14555555555433
Q ss_pred chhcccCCCCcEEEEcCCchHHHhhCC-CCccEEEEecCCCCChHHH---HHHHhc-CCCCcEEeccCCCCCChhHHHHH
Q 004729 373 MRVSIRCPQLEHLSLKRSNMAQAVLNC-PLLHLLDIASCHKLSDAAI---RLAATS-CPQLESLDMSNCSCVSDESLREI 447 (733)
Q Consensus 373 ~~i~~~~~~L~~L~L~~~~l~~~~~~~-~~L~~L~L~~c~~l~~~~l---~~l~~~-~~~L~~L~L~~~~~l~~~~l~~l 447 (733)
..... ..+...+..+ ++|++|++++| .+++... ...+.. +.+|++|++++|. +++.+...+
T Consensus 93 ~~~~~------------~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l 158 (362)
T 3goz_A 93 SYKSS------------DELVKTLAAIPFTITVLDLGWN-DFSSKSSSEFKQAFSNLPASITSLNLRGND-LGIKSSDEL 158 (362)
T ss_dssp GGSCH------------HHHHHHHHTSCTTCCEEECCSS-CGGGSCHHHHHHHHTTSCTTCCEEECTTSC-GGGSCHHHH
T ss_pred ChHHH------------HHHHHHHHhCCCCccEEECcCC-cCCcHHHHHHHHHHHhCCCceeEEEccCCc-CCHHHHHHH
Confidence 21100 0011123333 55666666654 2333322 222333 2466666666665 554444333
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.6e-13 Score=144.09 Aligned_cols=220 Identities=23% Similarity=0.256 Sum_probs=107.6
Q ss_pred CCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcc--cccccccCCCccEEEeeccccchhc---ccCCCCcEEE
Q 004729 312 RNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNG--VQEIPINHDQLRRLEITKCRVMRVS---IRCPQLEHLS 386 (733)
Q Consensus 312 ~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~--~~~~~~~~~~L~~L~L~~~~~~~i~---~~~~~L~~L~ 386 (733)
++|++|+++++.++......+..+++|++|++++|.+... .+.....+++|++|++++|.+..++ ..+++|+.|+
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~ 107 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLD 107 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEE
Confidence 4566666666666533333345666666666666655421 1222334566666666666544332 2345555555
Q ss_pred EcCCchHH-----HhhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCCCCCChhHHHHHHHhccccccccccc
Q 004729 387 LKRSNMAQ-----AVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSY 461 (733)
Q Consensus 387 L~~~~l~~-----~~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~ 461 (733)
++++.+.. .+..+++|++|+++++. +... ....+..+++|+.|+++++. ++...
T Consensus 108 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~~~l~~L~~L~l~~n~-l~~~~------------------ 166 (306)
T 2z66_A 108 FQHSNLKQMSEFSVFLSLRNLIYLDISHTH-TRVA-FNGIFNGLSSLEVLKMAGNS-FQENF------------------ 166 (306)
T ss_dssp CTTSEEESSTTTTTTTTCTTCCEEECTTSC-CEEC-STTTTTTCTTCCEEECTTCE-EGGGE------------------
T ss_pred CCCCcccccccchhhhhccCCCEEECCCCc-CCcc-chhhcccCcCCCEEECCCCc-ccccc------------------
Confidence 55543321 23344455555554431 2111 11122334444444444443 21100
Q ss_pred CCCCCcCCCCCCCccEEEeCCCCCCchHHHHHhhCCCCcCEEEEecCCCCccccc----CCCCCcEEEeccccCCccccc
Q 004729 462 CPNISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSL----ELPRLQNIRLVHCRKFADLNL 537 (733)
Q Consensus 462 ~~~l~~~~~~l~~L~~L~L~~c~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~----~l~~L~~L~L~~c~~l~~l~l 537 (733)
++.....+++|++|+++++ .++......+..+++|++|++++|. ++.++. .+++|+.|++.++. ++....
T Consensus 167 ---~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~ 240 (306)
T 2z66_A 167 ---LPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSHNN-FFSLDTFPYKCLNSLQVLDYSLNH-IMTSKK 240 (306)
T ss_dssp ---ECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSC-CSBCCSGGGTTCTTCCEEECTTSC-CCBCSS
T ss_pred ---chhHHhhCcCCCEEECCCC-CcCCcCHHHhcCCCCCCEEECCCCc-cCccChhhccCcccCCEeECCCCC-CcccCH
Confidence 1222335566666666663 3544444455566667777776664 232221 24566666665542 222111
Q ss_pred cccccceeecccC-cCCceeeeccCcccc
Q 004729 538 RAMMLSSIMVSNC-AALHRINITSNSLQK 565 (733)
Q Consensus 538 ~~~~L~~l~l~~c-~~L~~L~l~~n~L~~ 565 (733)
. .+..+ ++|+.|++.+|.+..
T Consensus 241 ~-------~~~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 241 Q-------ELQHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp S-------SCCCCCTTCCEEECTTCCEEC
T ss_pred H-------HHHhhhccCCEEEccCCCeec
Confidence 1 14455 378888888888764
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=4.5e-13 Score=139.11 Aligned_cols=194 Identities=14% Similarity=0.088 Sum_probs=106.8
Q ss_pred CCCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEEeeccc-cchh----cccCCCCcEE
Q 004729 311 LRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCR-VMRV----SIRCPQLEHL 385 (733)
Q Consensus 311 l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~-~~~i----~~~~~~L~~L 385 (733)
.++|++|+++++.++......+..+++|++|++++|.+....+..+..+++|++|++++|. +..+ ...+++|+.|
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L 110 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence 3567777777776665444556667777777777776655444455566777777777665 3332 2345666666
Q ss_pred EEcCCchHHH----hhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCCCCCChhHHHHHHHhccccccccccc
Q 004729 386 SLKRSNMAQA----VLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSY 461 (733)
Q Consensus 386 ~L~~~~l~~~----~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~ 461 (733)
+++++.+..+ +..+++|++|+++++ .+.... ...+..+++|+.|+++++. ++.... ..+..+++|++|++++
T Consensus 111 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~l~~ 186 (285)
T 1ozn_A 111 HLDRCGLQELGPGLFRGLAALQYLYLQDN-ALQALP-DDTFRDLGNLTHLFLHGNR-ISSVPE-RAFRGLHSLDRLLLHQ 186 (285)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSSC-CCEECT-TTTTTCTTCCEEECCS
T ss_pred ECCCCcCCEECHhHhhCCcCCCEEECCCC-cccccC-HhHhccCCCccEEECCCCc-ccccCH-HHhcCccccCEEECCC
Confidence 6666554322 445666666666664 233211 1123456667777776654 332111 1112455666666655
Q ss_pred CCCC---CcCCCCCCCccEEEeCCCCCCchHHHHHhhCCCCcCEEEEecCC
Q 004729 462 CPNI---SLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCN 509 (733)
Q Consensus 462 ~~~l---~~~~~~l~~L~~L~L~~c~~l~~~~~~~l~~~~~L~~L~L~~~~ 509 (733)
+... +.....+++|++|++++ +.++......+..+++|+.|++++|.
T Consensus 187 n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 187 NRVAHVHPHAFRDLGRLMTLYLFA-NNLSALPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCS-SCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred CcccccCHhHccCcccccEeeCCC-CcCCcCCHHHcccCcccCEEeccCCC
Confidence 5421 12223456666666666 34555444555666666666666654
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.38 E-value=7e-14 Score=146.82 Aligned_cols=172 Identities=18% Similarity=0.178 Sum_probs=121.3
Q ss_pred CCccEEEEcCCCchhHHHHHHhhcCCCCCEEEecCccCChH--HHHhccCCCCCcEEEEecCcCCcccccccccCCCccE
Q 004729 287 PNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDA--FFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRR 364 (733)
Q Consensus 287 ~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~i~~~--~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~ 364 (733)
++++.|++++. .+.......+..+++|++|+|++|.+... .+..+..+++|++|++++|.+.. ++.....+++|++
T Consensus 28 ~~l~~L~L~~n-~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~-l~~~~~~l~~L~~ 105 (306)
T 2z66_A 28 SSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEH 105 (306)
T ss_dssp TTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEE-EEEEEETCTTCCE
T ss_pred CCCCEEECCCC-ccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCcccc-ChhhcCCCCCCCE
Confidence 57999999884 34444334467899999999999988743 13445578999999999998764 3444668999999
Q ss_pred EEeeccccchh-----cccCCCCcEEEEcCCchH----HHhhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccC
Q 004729 365 LEITKCRVMRV-----SIRCPQLEHLSLKRSNMA----QAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSN 435 (733)
Q Consensus 365 L~L~~~~~~~i-----~~~~~~L~~L~L~~~~l~----~~~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~ 435 (733)
|++++|.+..+ ...+++|+.|+++++.+. ..+..+++|++|+++++ .+....++..+..+++|+.|++++
T Consensus 106 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~Ls~ 184 (306)
T 2z66_A 106 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN-SFQENFLPDIFTELRNLTFLDLSQ 184 (306)
T ss_dssp EECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTC-EEGGGEECSCCTTCTTCCEEECTT
T ss_pred EECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCC-ccccccchhHHhhCcCCCEEECCC
Confidence 99999987644 356899999999998765 33667899999999985 344322334456778899999988
Q ss_pred CCCCChhHHHHHHHhcccccccccccCC
Q 004729 436 CSCVSDESLREIALSCANLRILNSSYCP 463 (733)
Q Consensus 436 ~~~l~~~~l~~l~~~~~~L~~L~L~~~~ 463 (733)
+. ++..... .+..+++|++|+++++.
T Consensus 185 n~-l~~~~~~-~~~~l~~L~~L~L~~N~ 210 (306)
T 2z66_A 185 CQ-LEQLSPT-AFNSLSSLQVLNMSHNN 210 (306)
T ss_dssp SC-CCEECTT-TTTTCTTCCEEECTTSC
T ss_pred CC-cCCcCHH-HhcCCCCCCEEECCCCc
Confidence 76 4432111 11234555555555543
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.36 E-value=2.8e-12 Score=138.09 Aligned_cols=229 Identities=15% Similarity=0.118 Sum_probs=144.2
Q ss_pred HHHHHHhhCCCccEEEEcCCCchhHHHH----HHhhcCC-CCCEEEecCccCChHHHHhccC----C-CCCcEEEEecCc
Q 004729 278 QFEDVCQRYPNATEVNIYGAPAIHLLVM----KAVSLLR-NLEALTLGRGQLGDAFFHALAD----C-SMLKSLNVNDAT 347 (733)
Q Consensus 278 ~l~~~~~~~~~L~~L~L~~~~~~~~~~~----~~l~~l~-~L~~L~Ls~~~i~~~~~~~L~~----~-~~L~~L~L~~~~ 347 (733)
.+..+.....+++.|+++++. +..... ..+..++ +|++|+|++|.+++..+..+.. . ++|++|+|++|.
T Consensus 13 ~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~ 91 (362)
T 3goz_A 13 PVEEFTSIPHGVTSLDLSLNN-LYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNF 91 (362)
T ss_dssp HHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC
T ss_pred HHHHHHhCCCCceEEEccCCC-CChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCc
Confidence 345555666679999999854 444333 6677888 8999999999988655554444 3 999999999999
Q ss_pred CCccccc----ccccC-CCccEEEeeccccchhcc--------c-CCCCcEEEEcCCchH-----H---HhhCCC-CccE
Q 004729 348 LGNGVQE----IPINH-DQLRRLEITKCRVMRVSI--------R-CPQLEHLSLKRSNMA-----Q---AVLNCP-LLHL 404 (733)
Q Consensus 348 l~~~~~~----~~~~~-~~L~~L~L~~~~~~~i~~--------~-~~~L~~L~L~~~~l~-----~---~~~~~~-~L~~ 404 (733)
+...... ....+ ++|++|++++|.+..... . +++|++|+|++|.+. . .+..++ +|++
T Consensus 92 l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~ 171 (362)
T 3goz_A 92 LSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNS 171 (362)
T ss_dssp GGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCE
T ss_pred CChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccE
Confidence 8754433 23334 899999999998754331 2 358888888887665 2 234454 8888
Q ss_pred EEEecCCCCChH---HHHHHHhcC-CCCcEEeccCCCCCChhHHHHHHH---h-cccccccccccCCCCCc-------CC
Q 004729 405 LDIASCHKLSDA---AIRLAATSC-PQLESLDMSNCSCVSDESLREIAL---S-CANLRILNSSYCPNISL-------ES 469 (733)
Q Consensus 405 L~L~~c~~l~~~---~l~~l~~~~-~~L~~L~L~~~~~l~~~~l~~l~~---~-~~~L~~L~L~~~~~l~~-------~~ 469 (733)
|++++| .+++. .+...+..+ ++|+.|+++++. +++.+...+.. . .++|++|+++++..-.. ..
T Consensus 172 L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~ 249 (362)
T 3goz_A 172 LNLRGN-NLASKNCAELAKFLASIPASVTSLDLSANL-LGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLK 249 (362)
T ss_dssp EECTTS-CGGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTT
T ss_pred eeecCC-CCchhhHHHHHHHHHhCCCCCCEEECCCCC-CChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHH
Confidence 888886 34433 334445556 488888888876 66544443332 2 34777777776642211 11
Q ss_pred CCCCCccEEEeCCCC--CCchHHHHHh----hCCCCcCEEEEecCC
Q 004729 470 VRLPMLTVLQLHSCE--GITSASMAAI----SHSYMLEVLELDNCN 509 (733)
Q Consensus 470 ~~l~~L~~L~L~~c~--~l~~~~~~~l----~~~~~L~~L~L~~~~ 509 (733)
..+++|++|++++|. .+++.....+ ..+++|+.|++++|.
T Consensus 250 ~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 250 DSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp TTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred hcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 245666777666642 2444433332 234555566666554
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.35 E-value=7.8e-13 Score=139.31 Aligned_cols=136 Identities=21% Similarity=0.227 Sum_probs=71.5
Q ss_pred cCCCCCEEEecCccCChHHHHhc--cCCCCCcEEEEecCcCCcccccccccC-----CCccEEEeeccccchhcccCCCC
Q 004729 310 LLRNLEALTLGRGQLGDAFFHAL--ADCSMLKSLNVNDATLGNGVQEIPINH-----DQLRRLEITKCRVMRVSIRCPQL 382 (733)
Q Consensus 310 ~l~~L~~L~Ls~~~i~~~~~~~L--~~~~~L~~L~L~~~~l~~~~~~~~~~~-----~~L~~L~L~~~~~~~i~~~~~~L 382 (733)
.+++|++|+|++|.+....+..+ ..+++|++|++++|.+... +.....+ ++|++|++++|.+..+.
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~------ 165 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFS------ 165 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCC------
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccch------
Confidence 45566666666665554444333 4556666666666555433 2222222 44555555544432221
Q ss_pred cEEEEcCCchHHHhhCCCCccEEEEecCCCCChHHHHHHH--hcCCCCcEEeccCCCCCCh--hHHHHHHHhcccccccc
Q 004729 383 EHLSLKRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAA--TSCPQLESLDMSNCSCVSD--ESLREIALSCANLRILN 458 (733)
Q Consensus 383 ~~L~L~~~~l~~~~~~~~~L~~L~L~~c~~l~~~~l~~l~--~~~~~L~~L~L~~~~~l~~--~~l~~l~~~~~~L~~L~ 458 (733)
...+..+++|++|+++++.-.....+.... ..+++|++|+++++. ++. .....++..+++|+.|+
T Consensus 166 ----------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~l~~L~~L~ 234 (312)
T 1wwl_A 166 ----------CEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG-METPSGVCSALAAARVQLQGLD 234 (312)
T ss_dssp ----------TTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSC-CCCHHHHHHHHHHTTCCCSEEE
T ss_pred ----------HHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCc-CcchHHHHHHHHhcCCCCCEEE
Confidence 022445677777777775322222232222 567888888888876 542 22334444567777777
Q ss_pred cccCC
Q 004729 459 SSYCP 463 (733)
Q Consensus 459 L~~~~ 463 (733)
++++.
T Consensus 235 Ls~N~ 239 (312)
T 1wwl_A 235 LSHNS 239 (312)
T ss_dssp CTTSC
T ss_pred CCCCc
Confidence 77665
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=6.1e-13 Score=137.40 Aligned_cols=194 Identities=15% Similarity=0.112 Sum_probs=121.0
Q ss_pred CCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEEeeccccchhc----ccCCCCcEEEE
Q 004729 312 RNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVS----IRCPQLEHLSL 387 (733)
Q Consensus 312 ~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~i~----~~~~~L~~L~L 387 (733)
++|++|++++|.++......+..+++|++|++++|.+.......+..+++|++|++++|.+..+. ..+++|+.|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 35777777777666544445666777777777777665544445556677777777777655333 45667777777
Q ss_pred cCCchHHH----hhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCCCCCChhHHHHHHHhccccc----cccc
Q 004729 388 KRSNMAQA----VLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLR----ILNS 459 (733)
Q Consensus 388 ~~~~l~~~----~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~----~L~L 459 (733)
.++.+..+ +..+++|++|+++++ .+....++..+..+++|+.|+++++. ++......+ ..+++|+ +|++
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~l~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~-~~l~~L~~l~l~L~l 184 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDL-RVLHQMPLLNLSLDL 184 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECCSSC-CCEECGGGG-HHHHTCTTCCEEEEC
T ss_pred CCCCccccCchhcccCCCCCEEECcCC-ccceecCchhhccCCCCCEEECCCCC-CCcCCHHHh-hhhhhccccceeeec
Confidence 77655432 556788888888874 45443333456678899999998876 443211111 1334555 6677
Q ss_pred ccCCC--CCcCCCCCCCccEEEeCCCCCCchHHHHHhhCCCCcCEEEEecCC
Q 004729 460 SYCPN--ISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCN 509 (733)
Q Consensus 460 ~~~~~--l~~~~~~l~~L~~L~L~~c~~l~~~~~~~l~~~~~L~~L~L~~~~ 509 (733)
+++.. +........+|++|+++++ .++......+..+++|++|++++|.
T Consensus 185 s~n~l~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 185 SLNPMNFIQPGAFKEIRLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp CSSCCCEECTTSSCSCCEEEEECCSS-CCSCCCTTTTTTCCSCCEEECCSSC
T ss_pred CCCcccccCccccCCCcccEEECCCC-ceeecCHhHhcccccccEEEccCCc
Confidence 66652 2233334557888888874 4655544455667788888887764
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.7e-11 Score=128.82 Aligned_cols=220 Identities=18% Similarity=0.167 Sum_probs=127.6
Q ss_pred CcEEeccCCCCCChhHHHHHHH--hcccccccccccCCC---CCcCC--CCCCCccEEEeCCCCCCch----HHHHHhhC
Q 004729 428 LESLDMSNCSCVSDESLREIAL--SCANLRILNSSYCPN---ISLES--VRLPMLTVLQLHSCEGITS----ASMAAISH 496 (733)
Q Consensus 428 L~~L~L~~~~~l~~~~l~~l~~--~~~~L~~L~L~~~~~---l~~~~--~~l~~L~~L~L~~c~~l~~----~~~~~l~~ 496 (733)
++.|.+.++. +++..+..+.. .+++|++|+++++.. .+... ..+++|++|+++++ .+.. .....+..
T Consensus 66 l~~l~l~~~~-~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 66 VRRLTVGAAQ-VPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNV-SWATGRSWLAELQQWL 143 (310)
T ss_dssp CCEEEECSCC-CBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESC-CCSSTTSSHHHHHTTB
T ss_pred eeEEEEeCCc-CCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecc-cccchhhhhHHHHhhh
Confidence 4444444443 33333333221 234455555555441 11222 45677777777774 3443 12234456
Q ss_pred CCCcCEEEEecCCCCccccc----CCCCCcEEEeccccCCccccccccccceeecccCcCCceeeeccCccccccccccc
Q 004729 497 SYMLEVLELDNCNLLTSVSL----ELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQE 572 (733)
Q Consensus 497 ~~~L~~L~L~~~~~l~~~~~----~l~~L~~L~L~~c~~l~~l~l~~~~L~~l~l~~c~~L~~L~l~~n~L~~l~~~~~~ 572 (733)
+++|++|++++|.. ..++. .+++|+.|++.++.-.....+.. ...+..+++|+.|++++|.++.+..
T Consensus 144 ~~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~----~~~~~~l~~L~~L~Ls~N~l~~l~~---- 214 (310)
T 4glp_A 144 KPGLKVLSIAQAHS-PAFSCEQVRAFPALTSLDLSDNPGLGERGLMA----ALCPHKFPAIQNLALRNTGMETPTG---- 214 (310)
T ss_dssp CSCCCEEEEECCSS-CCCCTTSCCCCTTCCEEECCSCTTCHHHHHHT----TSCTTSSCCCCSCBCCSSCCCCHHH----
T ss_pred ccCCCEEEeeCCCc-chhhHHHhccCCCCCEEECCCCCCccchhhhH----HHhhhcCCCCCEEECCCCCCCchHH----
Confidence 78888888888754 33332 35777777777664322211111 1123577889999999998865421
Q ss_pred cHHHHHhcCCCCcEEeecCCCCCChhhhhhhcCCCCCCCccEEEeecCCCCccccc-cCCCccEEeccccccccccc--c
Q 004729 573 NLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRF-CSTSLVSLSLVGCRAITALE--L 649 (733)
Q Consensus 573 ~L~~l~~~~~~L~~L~Ls~C~~lt~~~~~~~~~~~~l~~L~~L~L~~c~~L~~~~~-~~~sL~~L~L~~c~~L~~l~--~ 649 (733)
....+...+++|+.|++++ +.+++..+..+.....+++|++|+|+++ .++.++. .+++|+.|+++++ .|+.++ .
T Consensus 215 ~~~~l~~~l~~L~~L~Ls~-N~l~~~~p~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~~~~L~~L~Ls~N-~l~~~~~~~ 291 (310)
T 4glp_A 215 VCAALAAAGVQPHSLDLSH-NSLRATVNPSAPRCMWSSALNSLNLSFA-GLEQVPKGLPAKLRVLDLSSN-RLNRAPQPD 291 (310)
T ss_dssp HHHHHHHHTCCCSSEECTT-SCCCCCCCSCCSSCCCCTTCCCEECCSS-CCCSCCSCCCSCCSCEECCSC-CCCSCCCTT
T ss_pred HHHHHHhcCCCCCEEECCC-CCCCccchhhHHhccCcCcCCEEECCCC-CCCchhhhhcCCCCEEECCCC-cCCCCchhh
Confidence 1222445788999999999 5777654333433334479999999887 4666654 3467888888774 455433 3
Q ss_pred ccccccEEeccc
Q 004729 650 KCPILEKVCLDG 661 (733)
Q Consensus 650 ~~p~L~~L~L~~ 661 (733)
.+++|++|++++
T Consensus 292 ~l~~L~~L~L~~ 303 (310)
T 4glp_A 292 ELPEVDNLTLDG 303 (310)
T ss_dssp SCCCCSCEECSS
T ss_pred hCCCccEEECcC
Confidence 567777777776
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.31 E-value=2.2e-12 Score=135.84 Aligned_cols=204 Identities=18% Similarity=0.116 Sum_probs=123.3
Q ss_pred hCCCccEEEEcCCCchhHHHHHHh--hcCCCCCEEEecCccCChHHHHhccCC-----CCCcEEEEecCcCCcccccccc
Q 004729 285 RYPNATEVNIYGAPAIHLLVMKAV--SLLRNLEALTLGRGQLGDAFFHALADC-----SMLKSLNVNDATLGNGVQEIPI 357 (733)
Q Consensus 285 ~~~~L~~L~L~~~~~~~~~~~~~l--~~l~~L~~L~Ls~~~i~~~~~~~L~~~-----~~L~~L~L~~~~l~~~~~~~~~ 357 (733)
.+++++.|+++++. +....+..+ ..+++|++|+|++|.++.. +..+..+ ++|++|++++|.+....+..+.
T Consensus 93 ~l~~L~~L~L~~n~-l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~ 170 (312)
T 1wwl_A 93 GISGLQELTLENLE-VTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVR 170 (312)
T ss_dssp TTSCCCEEEEEEEB-CBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCC
T ss_pred CcCCccEEEccCCc-ccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhc
Confidence 57899999999843 333233333 6889999999999988864 3334433 9999999999998876666677
Q ss_pred cCCCccEEEeeccccchhcccCCCCcEEEEcCCchHHH--hhCCCCccEEEEecCCCCChH--HHHHHHhcCCCCcEEec
Q 004729 358 NHDQLRRLEITKCRVMRVSIRCPQLEHLSLKRSNMAQA--VLNCPLLHLLDIASCHKLSDA--AIRLAATSCPQLESLDM 433 (733)
Q Consensus 358 ~~~~L~~L~L~~~~~~~i~~~~~~L~~L~L~~~~l~~~--~~~~~~L~~L~L~~c~~l~~~--~l~~l~~~~~~L~~L~L 433 (733)
.+++|++|++++|.+.... .+... +..+++|++|+++++ .+... ....++..+++|+.|++
T Consensus 171 ~l~~L~~L~Ls~N~l~~~~--------------~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~l~~L~~L~L 235 (312)
T 1wwl_A 171 VFPALSTLDLSDNPELGER--------------GLISALCPLKFPTLQVLALRNA-GMETPSGVCSALAAARVQLQGLDL 235 (312)
T ss_dssp CCSSCCEEECCSCTTCHHH--------------HHHHHSCTTSCTTCCEEECTTS-CCCCHHHHHHHHHHTTCCCSEEEC
T ss_pred cCCCCCEEECCCCCcCcch--------------HHHHHHHhccCCCCCEEECCCC-cCcchHHHHHHHHhcCCCCCEEEC
Confidence 7888888888877642110 00111 145667777777764 34421 12344556778888888
Q ss_pred cCCCCCChhHHHHHHHhcccccccccccCCCCCcCCCCCCCccEEEeCCCCCCchHHHHHhhCCCCcCEEEEecCC
Q 004729 434 SNCSCVSDESLREIALSCANLRILNSSYCPNISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCN 509 (733)
Q Consensus 434 ~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~~~l~~L~~L~L~~c~~l~~~~~~~l~~~~~L~~L~L~~~~ 509 (733)
+++. ++..........+++|+.|+++++........-.++|++|++++ +.++... .+..+++|++|++++|.
T Consensus 236 s~N~-l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~~L~~L~Ls~-N~l~~~p--~~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 236 SHNS-LRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKLSVLDLSY-NRLDRNP--SPDELPQVGNLSLKGNP 307 (312)
T ss_dssp TTSC-CCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCCSEEEEEECCS-SCCCSCC--CTTTSCEEEEEECTTCT
T ss_pred CCCc-CCcccchhhhhhcCCCCEEECCCCccChhhhhccCCceEEECCC-CCCCCCh--hHhhCCCCCEEeccCCC
Confidence 7776 43321001111345666666666542211111115677777776 3454432 15556666777766663
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=3.1e-13 Score=140.30 Aligned_cols=194 Identities=17% Similarity=0.129 Sum_probs=149.1
Q ss_pred CCCccEEEEcCCCchhHHHHHHhhcCCCCCEEEecCccCChHHHHhccCCCCCcEEEEecCc-CCcccccccccCCCccE
Q 004729 286 YPNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDAT-LGNGVQEIPINHDQLRR 364 (733)
Q Consensus 286 ~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~-l~~~~~~~~~~~~~L~~ 364 (733)
.++++.|++++. .+.......+..+++|++|++++|.++...+..+..+++|++|++++|. +....+.....+++|++
T Consensus 31 ~~~l~~L~l~~n-~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~ 109 (285)
T 1ozn_A 31 PAASQRIFLHGN-RISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHT 109 (285)
T ss_dssp CTTCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCE
T ss_pred CCCceEEEeeCC-cCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCE
Confidence 457999999884 4444444567889999999999999987667788899999999999997 66555666778999999
Q ss_pred EEeeccccchh----cccCCCCcEEEEcCCchHHH----hhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCC
Q 004729 365 LEITKCRVMRV----SIRCPQLEHLSLKRSNMAQA----VLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNC 436 (733)
Q Consensus 365 L~L~~~~~~~i----~~~~~~L~~L~L~~~~l~~~----~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~ 436 (733)
|++.+|.+..+ ...+++|+.|+++++.+..+ +..+++|++|+++++ .+.... ...+..+++|+.|+++++
T Consensus 110 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~l~~n 187 (285)
T 1ozn_A 110 LHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGN-RISSVP-ERAFRGLHSLDRLLLHQN 187 (285)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCEEC-TTTTTTCTTCCEEECCSS
T ss_pred EECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCC-cccccC-HHHhcCccccCEEECCCC
Confidence 99999987655 35689999999999877643 567899999999995 455432 123567899999999998
Q ss_pred CCCChhHHHHHHHhcccccccccccCCCCCcC---CCCCCCccEEEeCCCC
Q 004729 437 SCVSDESLREIALSCANLRILNSSYCPNISLE---SVRLPMLTVLQLHSCE 484 (733)
Q Consensus 437 ~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~---~~~l~~L~~L~L~~c~ 484 (733)
. ++...... +..+++|+.|+++++...... ...+++|++|+++++.
T Consensus 188 ~-l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 188 R-VAHVHPHA-FRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp C-CCEECTTT-TTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred c-ccccCHhH-ccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCC
Confidence 7 55432222 236789999999988633222 3478999999999854
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.30 E-value=2.6e-13 Score=152.09 Aligned_cols=216 Identities=19% Similarity=0.188 Sum_probs=163.4
Q ss_pred HHHhhCCCccEEEEcCCCchhHHHHHHhhcCCCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCC
Q 004729 281 DVCQRYPNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHD 360 (733)
Q Consensus 281 ~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~ 360 (733)
.+....++|+.|+++++ .+....+..+..+++|++|+|++|.++...+ +..+++|++|+|++|.+.... ..+
T Consensus 28 ~l~~~~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~ 99 (487)
T 3oja_A 28 SLRQSAWNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGP 99 (487)
T ss_dssp TTSTTGGGCCEEECCSS-CCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECT
T ss_pred HhcccCCCccEEEeeCC-cCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCC
Confidence 33344558999999984 4555555678899999999999999875443 888999999999999766422 348
Q ss_pred CccEEEeeccccchhc-ccCCCCcEEEEcCCchHHH----hhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccC
Q 004729 361 QLRRLEITKCRVMRVS-IRCPQLEHLSLKRSNMAQA----VLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSN 435 (733)
Q Consensus 361 ~L~~L~L~~~~~~~i~-~~~~~L~~L~L~~~~l~~~----~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~ 435 (733)
+|++|++++|.+..++ ..+++|+.|++++|.+... +..+++|++|+++++ .+.......+...+++|+.|++++
T Consensus 100 ~L~~L~L~~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~~l~~L~~L~Ls~ 178 (487)
T 3oja_A 100 SIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQY 178 (487)
T ss_dssp TCCEEECCSSCCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTT
T ss_pred CcCEEECcCCcCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCC-CCCCcChHHHhhhCCcccEEecCC
Confidence 9999999999887554 4578999999999877644 467899999999995 566544444555789999999999
Q ss_pred CCCCChhHHHHHHHhcccccccccccCCC--CCcCCCCCCCccEEEeCCCCCCchHHHHHhhCCCCcCEEEEecCCCC
Q 004729 436 CSCVSDESLREIALSCANLRILNSSYCPN--ISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLL 511 (733)
Q Consensus 436 ~~~l~~~~l~~l~~~~~~L~~L~L~~~~~--l~~~~~~l~~L~~L~L~~c~~l~~~~~~~l~~~~~L~~L~L~~~~~l 511 (733)
+. ++.. .... .+++|+.|+++++.. ++.....+++|+.|+++++ .+... ...+..+++|+.|++++|...
T Consensus 179 N~-l~~~--~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N-~l~~l-p~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 179 NF-IYDV--KGQV-VFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNN-KLVLI-EKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp SC-CCEE--ECCC-CCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTS-CCCEE-CTTCCCCTTCCEEECTTCCBC
T ss_pred Cc-cccc--cccc-cCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCC-cCccc-chhhccCCCCCEEEcCCCCCc
Confidence 87 5543 1111 478999999998873 2333457899999999994 45542 234667889999999988654
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.29 E-value=4.4e-12 Score=133.36 Aligned_cols=196 Identities=21% Similarity=0.240 Sum_probs=88.8
Q ss_pred CCCCCEEEecCccCChHHHHhc--cCCCCCcEEEEecCcCCcccc----cccccCCCccEEEeeccccchhcccCCCCcE
Q 004729 311 LRNLEALTLGRGQLGDAFFHAL--ADCSMLKSLNVNDATLGNGVQ----EIPINHDQLRRLEITKCRVMRVSIRCPQLEH 384 (733)
Q Consensus 311 l~~L~~L~Ls~~~i~~~~~~~L--~~~~~L~~L~L~~~~l~~~~~----~~~~~~~~L~~L~L~~~~~~~i~~~~~~L~~ 384 (733)
+++|++|++++|.+....+..+ ..+++|++|++++|.+..... .....+++|++|++++|.+..++.
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~------- 162 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSC------- 162 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCT-------
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhH-------
Confidence 3556677776666655444444 556667777777666554222 111245566666666655432221
Q ss_pred EEEcCCchHHHhhCCCCccEEEEecCCCCChHHHH--HHHhcCCCCcEEeccCCCCCCh--hHHHHHHHhcccccccccc
Q 004729 385 LSLKRSNMAQAVLNCPLLHLLDIASCHKLSDAAIR--LAATSCPQLESLDMSNCSCVSD--ESLREIALSCANLRILNSS 460 (733)
Q Consensus 385 L~L~~~~l~~~~~~~~~L~~L~L~~c~~l~~~~l~--~l~~~~~~L~~L~L~~~~~l~~--~~l~~l~~~~~~L~~L~L~ 460 (733)
..+..+++|++|+++++.-.....+. .....+++|++|++++|. ++. .....+...+++|++|+++
T Consensus 163 ---------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~~l~~L~~L~Ls 232 (310)
T 4glp_A 163 ---------EQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG-METPTGVCAALAAAGVQPHSLDLS 232 (310)
T ss_dssp ---------TSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC-CCCHHHHHHHHHHHTCCCSSEECT
T ss_pred ---------HHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC-CCchHHHHHHHHhcCCCCCEEECC
Confidence 11223344444444443211111111 111234455555555544 321 1111123344555555555
Q ss_pred cCCCCCc---CCCC---CCCccEEEeCCCCCCchHHHHHhhCCCCcCEEEEecCCCCcccc--cCCCCCcEEEecc
Q 004729 461 YCPNISL---ESVR---LPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVS--LELPRLQNIRLVH 528 (733)
Q Consensus 461 ~~~~l~~---~~~~---l~~L~~L~L~~c~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~--~~l~~L~~L~L~~ 528 (733)
++..... .... +++|++|+++++ .++.. ...+ .++|++|++++|. ++.++ ..+++|+.|.+.+
T Consensus 233 ~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N-~l~~l-p~~~--~~~L~~L~Ls~N~-l~~~~~~~~l~~L~~L~L~~ 303 (310)
T 4glp_A 233 HNSLRATVNPSAPRCMWSSALNSLNLSFA-GLEQV-PKGL--PAKLRVLDLSSNR-LNRAPQPDELPEVDNLTLDG 303 (310)
T ss_dssp TSCCCCCCCSCCSSCCCCTTCCCEECCSS-CCCSC-CSCC--CSCCSCEECCSCC-CCSCCCTTSCCCCSCEECSS
T ss_pred CCCCCccchhhHHhccCcCcCCEEECCCC-CCCch-hhhh--cCCCCEEECCCCc-CCCCchhhhCCCccEEECcC
Confidence 5442111 1122 256666666663 34421 1111 2567777776664 33322 2345555555543
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.27 E-value=1.1e-11 Score=130.16 Aligned_cols=187 Identities=19% Similarity=0.271 Sum_probs=91.1
Q ss_pred CCccEEEEcCCCchhHHHHHHhhcCCCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEE
Q 004729 287 PNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLE 366 (733)
Q Consensus 287 ~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~ 366 (733)
++++.|++.++. +... ..+..+++|++|++++|.+.+... +..+++|++|++++|.+... + ....+++|++|+
T Consensus 41 ~~L~~L~l~~~~-i~~l--~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~ 113 (308)
T 1h6u_A 41 DGITTLSAFGTG-VTTI--EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV-S-AIAGLQSIKTLD 113 (308)
T ss_dssp HTCCEEECTTSC-CCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC-G-GGTTCTTCCEEE
T ss_pred CCcCEEEeeCCC-ccCc--hhhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc-h-hhcCCCCCCEEE
Confidence 456666665532 2221 134555666666666665553222 55556666666666554432 1 233445555555
Q ss_pred eeccccchhcccCCCCcEEEEcCCchHHHhhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCCCCCChhHHHH
Q 004729 367 ITKCRVMRVSIRCPQLEHLSLKRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLRE 446 (733)
Q Consensus 367 L~~~~~~~i~~~~~~L~~L~L~~~~l~~~~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~l~~ 446 (733)
+++|.+..+. .+..+++|++|+++++ .+..... +..+++|+.|+++++. +++...
T Consensus 114 l~~n~l~~~~------------------~l~~l~~L~~L~l~~n-~l~~~~~---l~~l~~L~~L~l~~n~-l~~~~~-- 168 (308)
T 1h6u_A 114 LTSTQITDVT------------------PLAGLSNLQVLYLDLN-QITNISP---LAGLTNLQYLSIGNAQ-VSDLTP-- 168 (308)
T ss_dssp CTTSCCCCCG------------------GGTTCTTCCEEECCSS-CCCCCGG---GGGCTTCCEEECCSSC-CCCCGG--
T ss_pred CCCCCCCCch------------------hhcCCCCCCEEECCCC-ccCcCcc---ccCCCCccEEEccCCc-CCCChh--
Confidence 5554432211 1344556666666554 2332211 4455666666666654 332111
Q ss_pred HHHhcccccccccccCCCCCcC-CCCCCCccEEEeCCCCCCchHHHHHhhCCCCcCEEEEecCC
Q 004729 447 IALSCANLRILNSSYCPNISLE-SVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCN 509 (733)
Q Consensus 447 l~~~~~~L~~L~L~~~~~l~~~-~~~l~~L~~L~L~~c~~l~~~~~~~l~~~~~L~~L~L~~~~ 509 (733)
...+++|+.|+++++...... ...+++|++|+++++ .+.+.. .+..+++|+.|++++|.
T Consensus 169 -l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N-~l~~~~--~l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 169 -LANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNN-QISDVS--PLANTSNLFIVTLTNQT 228 (308)
T ss_dssp -GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECTTS-CCCBCG--GGTTCTTCCEEEEEEEE
T ss_pred -hcCCCCCCEEECCCCccCcChhhcCCCCCCEEEccCC-ccCccc--cccCCCCCCEEEccCCe
Confidence 224455555555554321111 234566666666663 344333 25566666666666653
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.26 E-value=3.7e-11 Score=121.17 Aligned_cols=168 Identities=16% Similarity=0.146 Sum_probs=102.6
Q ss_pred CCccEEEeCCCCCCchHHHHHhhCCCCcCEEEEecCCCCccccc----CCCCCcEEEeccccCCccccccccccceeecc
Q 004729 473 PMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSL----ELPRLQNIRLVHCRKFADLNLRAMMLSSIMVS 548 (733)
Q Consensus 473 ~~L~~L~L~~c~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~----~l~~L~~L~L~~c~~l~~l~l~~~~L~~l~l~ 548 (733)
++|++|++++ +.++......+..+++|++|++++|..++.++. .+++|+.|.+.+|..++.+... .+.
T Consensus 31 ~~l~~L~l~~-n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~-------~f~ 102 (239)
T 2xwt_C 31 PSTQTLKLIE-THLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPD-------ALK 102 (239)
T ss_dssp TTCCEEEEES-CCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTT-------SEE
T ss_pred CcccEEEEeC-CcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHH-------HhC
Confidence 4688888887 456665555677788888888888864665553 2567777777665555543321 145
Q ss_pred cCcCCceeeeccCccccccccccccHHHHHhcCCCCc---EEeecCCCCCChhhhhhhcCCCCCCCcc-EEEeecCCCCc
Q 004729 549 NCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQ---EVDLTDCESLTNSVCEVFSDGGGCPMLK-SLVLDNCEGLT 624 (733)
Q Consensus 549 ~c~~L~~L~l~~n~L~~l~~~~~~~L~~l~~~~~~L~---~L~Ls~C~~lt~~~~~~~~~~~~l~~L~-~L~L~~c~~L~ 624 (733)
.+++|+.|++.+|.++.+.. +..+++|+ .|++++++.++......| ..+++|+ .|+++++ .++
T Consensus 103 ~l~~L~~L~l~~n~l~~lp~---------~~~l~~L~~L~~L~l~~N~~l~~i~~~~~---~~l~~L~~~L~l~~n-~l~ 169 (239)
T 2xwt_C 103 ELPLLKFLGIFNTGLKMFPD---------LTKVYSTDIFFILEITDNPYMTSIPVNAF---QGLCNETLTLKLYNN-GFT 169 (239)
T ss_dssp CCTTCCEEEEEEECCCSCCC---------CTTCCBCCSEEEEEEESCTTCCEECTTTT---TTTBSSEEEEECCSC-CCC
T ss_pred CCCCCCEEeCCCCCCccccc---------cccccccccccEEECCCCcchhhcCcccc---cchhcceeEEEcCCC-CCc
Confidence 67778888888877765421 12455665 888877546654433333 4577777 7777765 344
Q ss_pred cccc---cCCCccEEeccccccccccc----ccc-ccccEEeccc
Q 004729 625 VVRF---CSTSLVSLSLVGCRAITALE----LKC-PILEKVCLDG 661 (733)
Q Consensus 625 ~~~~---~~~sL~~L~L~~c~~L~~l~----~~~-p~L~~L~L~~ 661 (733)
.++. ..++|++|++++++.++.++ ..+ ++|++|++++
T Consensus 170 ~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~ 214 (239)
T 2xwt_C 170 SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQ 214 (239)
T ss_dssp EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTT
T ss_pred ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCC
Confidence 4432 23566666666654455443 134 5566666655
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.20 E-value=9.8e-12 Score=125.41 Aligned_cols=193 Identities=13% Similarity=0.092 Sum_probs=106.5
Q ss_pred CCCEEEecCccCChHHHHhccCCCCCcEEEEecCc-CCcccccccccCCCccEEEeec-cccchhc----ccCCCCcEEE
Q 004729 313 NLEALTLGRGQLGDAFFHALADCSMLKSLNVNDAT-LGNGVQEIPINHDQLRRLEITK-CRVMRVS----IRCPQLEHLS 386 (733)
Q Consensus 313 ~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~-l~~~~~~~~~~~~~L~~L~L~~-~~~~~i~----~~~~~L~~L~ 386 (733)
+|++|+++++.++......+..+++|++|++++|. +.......+..+++|++|++++ +.+..++ ..+++|+.|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 67777777777765444456677777777777775 5544334455667777777776 5544332 2344444444
Q ss_pred EcCCchHHHhhCCCCccEEEEecCCCCChHHHHHHHhcCCCCc---EEeccCCCCCChhHHHHHHHhccccc-ccccccC
Q 004729 387 LKRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLE---SLDMSNCSCVSDESLREIALSCANLR-ILNSSYC 462 (733)
Q Consensus 387 L~~~~l~~~~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~---~L~L~~~~~l~~~~l~~l~~~~~~L~-~L~L~~~ 462 (733)
+++|.+..+ +. +..+++|+ .|+++++..++.... ..+..+++|+ .|+++++
T Consensus 112 l~~n~l~~l-----------------------p~-~~~l~~L~~L~~L~l~~N~~l~~i~~-~~~~~l~~L~~~L~l~~n 166 (239)
T 2xwt_C 112 IFNTGLKMF-----------------------PD-LTKVYSTDIFFILEITDNPYMTSIPV-NAFQGLCNETLTLKLYNN 166 (239)
T ss_dssp EEEECCCSC-----------------------CC-CTTCCBCCSEEEEEEESCTTCCEECT-TTTTTTBSSEEEEECCSC
T ss_pred CCCCCCccc-----------------------cc-cccccccccccEEECCCCcchhhcCc-ccccchhcceeEEEcCCC
Confidence 444433211 11 22334444 555555421222111 1112445565 6666554
Q ss_pred CC--CCcCCCCCCCccEEEeCCCCCCchHHHHHhhCC-CCcCEEEEecCCCCccccc-CCCCCcEEEeccccC
Q 004729 463 PN--ISLESVRLPMLTVLQLHSCEGITSASMAAISHS-YMLEVLELDNCNLLTSVSL-ELPRLQNIRLVHCRK 531 (733)
Q Consensus 463 ~~--l~~~~~~l~~L~~L~L~~c~~l~~~~~~~l~~~-~~L~~L~L~~~~~l~~~~~-~l~~L~~L~L~~c~~ 531 (733)
.. ++......++|++|++.++..++......+..+ ++|+.|++++|. ++.++. .+++|+.|.+.++..
T Consensus 167 ~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~-l~~l~~~~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 167 GFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTS-VTALPSKGLEHLKELIARNTWT 238 (239)
T ss_dssp CCCEECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCC-CCCCCCTTCTTCSEEECTTC--
T ss_pred CCcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCc-cccCChhHhccCceeeccCccC
Confidence 32 222223336788888887534665555556677 888888888874 455554 377888887766543
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.19 E-value=2.4e-10 Score=122.23 Aligned_cols=199 Identities=18% Similarity=0.152 Sum_probs=125.8
Q ss_pred CCccEEEeCCCCCCchHHHHHhhCCCCcCEEEEecCCCCcccccC----CCCCcEEEeccccCCccccccccccceeecc
Q 004729 473 PMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLE----LPRLQNIRLVHCRKFADLNLRAMMLSSIMVS 548 (733)
Q Consensus 473 ~~L~~L~L~~c~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~----l~~L~~L~L~~c~~l~~l~l~~~~L~~l~l~ 548 (733)
+++++|+|++ +.++......++++++|++|+|++|.....++.. ++++..+.+..+.+++.+.-. .+.
T Consensus 30 ~~l~~L~Ls~-N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~-------~f~ 101 (350)
T 4ay9_X 30 RNAIELRFVL-TKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPE-------AFQ 101 (350)
T ss_dssp TTCSEEEEES-CCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTT-------SBC
T ss_pred CCCCEEEccC-CcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCch-------hhh
Confidence 5789999988 5677666566788899999999998766655532 455555555454444443211 256
Q ss_pred cCcCCceeeeccCccccccccccccHHHHHhcCCCCcEEeecCCCCCChhhhhhhcCCCCCCCccEEEeecCCCCccccc
Q 004729 549 NCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRF 628 (733)
Q Consensus 549 ~c~~L~~L~l~~n~L~~l~~~~~~~L~~l~~~~~~L~~L~Ls~C~~lt~~~~~~~~~~~~l~~L~~L~L~~c~~L~~~~~ 628 (733)
.+++|+.|++.+|.++.+..... ....++..|++.+++.++......|. +....|+.|+++++ .++.++.
T Consensus 102 ~l~~L~~L~l~~n~l~~~~~~~~-------~~~~~l~~l~l~~~~~i~~l~~~~f~--~~~~~l~~L~L~~N-~i~~i~~ 171 (350)
T 4ay9_X 102 NLPNLQYLLISNTGIKHLPDVHK-------IHSLQKVLLDIQDNINIHTIERNSFV--GLSFESVILWLNKN-GIQEIHN 171 (350)
T ss_dssp CCTTCCEEEEEEECCSSCCCCTT-------CCBSSCEEEEEESCTTCCEECTTSST--TSBSSCEEEECCSS-CCCEECT
T ss_pred hccccccccccccccccCCchhh-------cccchhhhhhhccccccccccccchh--hcchhhhhhccccc-cccCCCh
Confidence 77888888888888876532211 13346778888777777654333331 22346778888775 4666543
Q ss_pred ---cCCCccEEecccccccccccc----ccccccEEecccccccccccc-cccCCcEEEecCCCCccccc
Q 004729 629 ---CSTSLVSLSLVGCRAITALEL----KCPILEKVCLDGCDHIESASF-VPVALQSLNLGICPKLSTLG 690 (733)
Q Consensus 629 ---~~~sL~~L~L~~c~~L~~l~~----~~p~L~~L~L~~c~~L~~~~~-~~~~L~~L~L~~c~~L~~l~ 690 (733)
...+|++|.+.+++.++.++. .+++|++|+|++ +.|+.+.. ...+|+.|.+..+.+++.+|
T Consensus 172 ~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~-N~l~~lp~~~~~~L~~L~~l~~~~l~~lP 240 (350)
T 4ay9_X 172 SAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISR-TRIHSLPSYGLENLKKLRARSTYNLKKLP 240 (350)
T ss_dssp TSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTT-SCCCCCCSSSCTTCCEEECTTCTTCCCCC
T ss_pred hhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCC-CCcCccChhhhccchHhhhccCCCcCcCC
Confidence 456677777777777776652 567777777777 34544322 12356666666666666665
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.16 E-value=5.4e-11 Score=124.93 Aligned_cols=182 Identities=18% Similarity=0.171 Sum_probs=111.1
Q ss_pred eeEEeeCCCCCCHHHHHHHHhhCCCccEEEEcCCCchhHHHHHHhhcCCCCCEEEecCccCChHHHHhccCCCCCcEEEE
Q 004729 264 WRCLNFENRKISVEQFEDVCQRYPNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNV 343 (733)
Q Consensus 264 w~~l~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L 343 (733)
.+.+++....+.. +. .+..+++++.|+++++. +..... +..+++|++|++++|.+... ..+..+++|++|++
T Consensus 43 L~~L~l~~~~i~~--l~-~~~~l~~L~~L~L~~n~-i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~l 114 (308)
T 1h6u_A 43 ITTLSAFGTGVTT--IE-GVQYLNNLIGLELKDNQ-ITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDL 114 (308)
T ss_dssp CCEEECTTSCCCC--CT-TGGGCTTCCEEECCSSC-CCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEEC
T ss_pred cCEEEeeCCCccC--ch-hhhccCCCCEEEccCCc-CCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEEC
Confidence 3456666544432 11 25678999999999853 433322 78999999999999998753 46888999999999
Q ss_pred ecCcCCcccccccccCCCccEEEeeccccchhc--ccCCCCcEEEEcCCchHHHhhCCCCccEEEEecCCCCChHHHHHH
Q 004729 344 NDATLGNGVQEIPINHDQLRRLEITKCRVMRVS--IRCPQLEHLSLKRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLA 421 (733)
Q Consensus 344 ~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~i~--~~~~~L~~L~L~~~~l~~~~~~~~~L~~L~L~~c~~l~~~~l~~l 421 (733)
++|.+... +. ...+++|++|++++|.+..+. ..+++|+.|++++|.+ .+.. .
T Consensus 115 ~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l---------------------~~~~--~- 168 (308)
T 1h6u_A 115 TSTQITDV-TP-LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQV---------------------SDLT--P- 168 (308)
T ss_dssp TTSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCC---------------------CCCG--G-
T ss_pred CCCCCCCc-hh-hcCCCCCCEEECCCCccCcCccccCCCCccEEEccCCcC---------------------CCCh--h-
Confidence 99998753 32 568899999999998765433 2344555555544433 2211 1
Q ss_pred HhcCCCCcEEeccCCCCCChhHHHHHHHhcccccccccccCCCCCc-CCCCCCCccEEEeCCC
Q 004729 422 ATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNISL-ESVRLPMLTVLQLHSC 483 (733)
Q Consensus 422 ~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~-~~~~l~~L~~L~L~~c 483 (733)
+..+++|+.|+++++. +++... ...+++|++|+++++..... ....+++|+.|+++++
T Consensus 169 l~~l~~L~~L~l~~n~-l~~~~~---l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~l~~N 227 (308)
T 1h6u_A 169 LANLSKLTTLKADDNK-ISDISP---LASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQ 227 (308)
T ss_dssp GTTCTTCCEEECCSSC-CCCCGG---GGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEEEE
T ss_pred hcCCCCCCEEECCCCc-cCcChh---hcCCCCCCEEEccCCccCccccccCCCCCCEEEccCC
Confidence 3344555555555544 222111 22445555555555442111 1235666777777663
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.13 E-value=5.1e-11 Score=122.53 Aligned_cols=99 Identities=15% Similarity=0.109 Sum_probs=40.5
Q ss_pred CCcEEEEecCcCCcccccccccCCCccEEEeeccccchhc----ccCCCCcEEEEcCCchHH----HhhCCCCccEEEEe
Q 004729 337 MLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVS----IRCPQLEHLSLKRSNMAQ----AVLNCPLLHLLDIA 408 (733)
Q Consensus 337 ~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~i~----~~~~~L~~L~L~~~~l~~----~~~~~~~L~~L~L~ 408 (733)
+|++|+++++.+.......+..+++|++|++++|.+..++ ..+++|+.|+++++.+.. .+..+++|++|+++
T Consensus 38 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 117 (270)
T 2o6q_A 38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLD 117 (270)
T ss_dssp TCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECC
T ss_pred CCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECC
Confidence 4455555544444333333344444555555444433222 223344444444433321 12344455555555
Q ss_pred cCCCCChHHHHHHHhcCCCCcEEeccCCC
Q 004729 409 SCHKLSDAAIRLAATSCPQLESLDMSNCS 437 (733)
Q Consensus 409 ~c~~l~~~~l~~l~~~~~~L~~L~L~~~~ 437 (733)
++ .+.... ...+..+++|+.|+++++.
T Consensus 118 ~n-~l~~~~-~~~~~~l~~L~~L~Ls~n~ 144 (270)
T 2o6q_A 118 RN-QLKSLP-PRVFDSLTKLTYLSLGYNE 144 (270)
T ss_dssp SS-CCCCCC-TTTTTTCTTCCEEECCSSC
T ss_pred CC-ccCeeC-HHHhCcCcCCCEEECCCCc
Confidence 42 222211 1122344555555555543
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.10 E-value=7.9e-10 Score=113.57 Aligned_cols=101 Identities=22% Similarity=0.126 Sum_probs=50.4
Q ss_pred ccCcCCceeeeccCccccccccccccHHHHHhcCCCCcEEeecCCCCCChhhhhhhcCCCCCCCccEEEeecCCCCcccc
Q 004729 548 SNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVR 627 (733)
Q Consensus 548 ~~c~~L~~L~l~~n~L~~l~~~~~~~L~~l~~~~~~L~~L~Ls~C~~lt~~~~~~~~~~~~l~~L~~L~L~~c~~L~~~~ 627 (733)
..+++|+.|++.+|.++.+.... +..+++|+.|++++| .++......| ..+++|+.|+|+++ .++.++
T Consensus 106 ~~l~~L~~L~l~~n~l~~~~~~~-------~~~l~~L~~L~Ls~n-~l~~~~~~~~---~~l~~L~~L~L~~n-~l~~~~ 173 (270)
T 2o6q_A 106 DQLVNLAELRLDRNQLKSLPPRV-------FDSLTKLTYLSLGYN-ELQSLPKGVF---DKLTSLKELRLYNN-QLKRVP 173 (270)
T ss_dssp TTCSSCCEEECCSSCCCCCCTTT-------TTTCTTCCEEECCSS-CCCCCCTTTT---TTCTTCCEEECCSS-CCSCCC
T ss_pred ccccCCCEEECCCCccCeeCHHH-------hCcCcCCCEEECCCC-cCCccCHhHc---cCCcccceeEecCC-cCcEeC
Confidence 44556666666666655443211 124456666666663 4443322222 44566666666555 233332
Q ss_pred c----cCCCccEEecccccccccccc----ccccccEEeccc
Q 004729 628 F----CSTSLVSLSLVGCRAITALEL----KCPILEKVCLDG 661 (733)
Q Consensus 628 ~----~~~sL~~L~L~~c~~L~~l~~----~~p~L~~L~L~~ 661 (733)
. .+++|+.|+++++ .++.++. .+++|++|+|++
T Consensus 174 ~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~ 214 (270)
T 2o6q_A 174 EGAFDKLTELKTLKLDNN-QLKRVPEGAFDSLEKLKMLQLQE 214 (270)
T ss_dssp TTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCS
T ss_pred hhHhccCCCcCEEECCCC-cCCcCCHHHhccccCCCEEEecC
Confidence 2 3455666666553 3443331 356666666655
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=5.9e-11 Score=122.38 Aligned_cols=191 Identities=17% Similarity=0.122 Sum_probs=141.6
Q ss_pred CCccEEEEcCCCchhHHHHHHhhcCCCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEE
Q 004729 287 PNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLE 366 (733)
Q Consensus 287 ~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~ 366 (733)
++++.|++++. .+.......+..+++|++|++++|.+.......+..+++|++|++++|.+.......+..+++|++|+
T Consensus 28 ~~l~~L~ls~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (276)
T 2z62_A 28 FSTKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (276)
T ss_dssp TTCCEEECTTC-CCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred CCccEEECCCC-cccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEE
Confidence 46899999884 44444444677899999999999998866666788899999999999998876666778899999999
Q ss_pred eeccccchhc----ccCCCCcEEEEcCCchH-----HHhhCCCCccEEEEecCCCCChH---HHHHHHhcCCCCc-EEec
Q 004729 367 ITKCRVMRVS----IRCPQLEHLSLKRSNMA-----QAVLNCPLLHLLDIASCHKLSDA---AIRLAATSCPQLE-SLDM 433 (733)
Q Consensus 367 L~~~~~~~i~----~~~~~L~~L~L~~~~l~-----~~~~~~~~L~~L~L~~c~~l~~~---~l~~l~~~~~~L~-~L~L 433 (733)
+.+|.+..+. ..+++|+.|++++|.+. ..+..+++|++|+++++ .+... .+.. +..++.|. .|++
T Consensus 107 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~-l~~L~~l~l~L~l 184 (276)
T 2z62_A 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRV-LHQMPLLNLSLDL 184 (276)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS-CCCEECGGGGHH-HHTCTTCCEEEEC
T ss_pred CCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCC-CCCcCCHHHhhh-hhhccccceeeec
Confidence 9999876543 46899999999998654 45778999999999996 45442 2222 23344444 8999
Q ss_pred cCCCCCChhHHHHHHHhcccccccccccCCCC--CcC-CCCCCCccEEEeCCC
Q 004729 434 SNCSCVSDESLREIALSCANLRILNSSYCPNI--SLE-SVRLPMLTVLQLHSC 483 (733)
Q Consensus 434 ~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~~l--~~~-~~~l~~L~~L~L~~c 483 (733)
+++. ++......+ ...+|+.|+++++... +.. ...+++|++|++++.
T Consensus 185 s~n~-l~~~~~~~~--~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N 234 (276)
T 2z62_A 185 SLNP-MNFIQPGAF--KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234 (276)
T ss_dssp CSSC-CCEECTTSS--CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSS
T ss_pred CCCc-ccccCcccc--CCCcccEEECCCCceeecCHhHhcccccccEEEccCC
Confidence 9876 443221111 3358999999988732 222 246899999999983
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.07 E-value=9e-10 Score=114.46 Aligned_cols=165 Identities=25% Similarity=0.271 Sum_probs=82.7
Q ss_pred CCccEEEeCCCCCCchHHHHHhhCCCCcCEEEEecCCCCccccc--CCCCCcEEEeccccCCccccccccccceeecccC
Q 004729 473 PMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSL--ELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNC 550 (733)
Q Consensus 473 ~~L~~L~L~~c~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~--~l~~L~~L~L~~c~~l~~l~l~~~~L~~l~l~~c 550 (733)
++++.|++++ +.++......+..+++|++|++++|. ++.++. .+++|+.|++.+. .++.+. . .+..+
T Consensus 31 ~~l~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~Ls~N-~l~~l~--~------~~~~l 99 (290)
T 1p9a_G 31 KDTTILHLSE-NLLYTFSLATLMPYTRLTQLNLDRAE-LTKLQVDGTLPVLGTLDLSHN-QLQSLP--L------LGQTL 99 (290)
T ss_dssp TTCCEEECTT-SCCSEEEGGGGTTCTTCCEEECTTSC-CCEEECCSCCTTCCEEECCSS-CCSSCC--C------CTTTC
T ss_pred CCCCEEEcCC-CcCCccCHHHhhcCCCCCEEECCCCc-cCcccCCCCCCcCCEEECCCC-cCCcCc--h------hhccC
Confidence 4555666655 33444444445556666666666553 333322 2455555555443 121111 0 13455
Q ss_pred cCCceeeeccCccccccccccccHHHHHhcCCCCcEEeecCCCCCChhhhhhhcCCCCCCCccEEEeecCCCCccccc--
Q 004729 551 AALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRF-- 628 (733)
Q Consensus 551 ~~L~~L~l~~n~L~~l~~~~~~~L~~l~~~~~~L~~L~Ls~C~~lt~~~~~~~~~~~~l~~L~~L~L~~c~~L~~~~~-- 628 (733)
++|+.|++++|.++.+.... +..+++|+.|++++ +.++......| ..+++|+.|+|+++ .++.++.
T Consensus 100 ~~L~~L~l~~N~l~~l~~~~-------~~~l~~L~~L~L~~-N~l~~~~~~~~---~~l~~L~~L~L~~N-~l~~l~~~~ 167 (290)
T 1p9a_G 100 PALTVLDVSFNRLTSLPLGA-------LRGLGELQELYLKG-NELKTLPPGLL---TPTPKLEKLSLANN-NLTELPAGL 167 (290)
T ss_dssp TTCCEEECCSSCCCCCCSST-------TTTCTTCCEEECTT-SCCCCCCTTTT---TTCTTCCEEECTTS-CCSCCCTTT
T ss_pred CCCCEEECCCCcCcccCHHH-------HcCCCCCCEEECCC-CCCCccChhhc---ccccCCCEEECCCC-cCCccCHHH
Confidence 66666666666666543211 12345666666666 35543332222 34566666666665 3444432
Q ss_pred --cCCCccEEecccccccccccc---ccccccEEeccc
Q 004729 629 --CSTSLVSLSLVGCRAITALEL---KCPILEKVCLDG 661 (733)
Q Consensus 629 --~~~sL~~L~L~~c~~L~~l~~---~~p~L~~L~L~~ 661 (733)
.+++|+.|++++ +.|+.++. .+++|++|+|++
T Consensus 168 ~~~l~~L~~L~L~~-N~l~~ip~~~~~~~~L~~l~L~~ 204 (290)
T 1p9a_G 168 LNGLENLDTLLLQE-NSLYTIPKGFFGSHLLPFAFLHG 204 (290)
T ss_dssp TTTCTTCCEEECCS-SCCCCCCTTTTTTCCCSEEECCS
T ss_pred hcCcCCCCEEECCC-CcCCccChhhcccccCCeEEeCC
Confidence 355666666665 33444442 345566666665
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.04 E-value=3.5e-10 Score=120.97 Aligned_cols=217 Identities=15% Similarity=0.106 Sum_probs=140.7
Q ss_pred CCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCCCCCChhHHHHHHHhcccccccccccCCCCCc-CCCCCCCccEE
Q 004729 400 PLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNISL-ESVRLPMLTVL 478 (733)
Q Consensus 400 ~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~-~~~~l~~L~~L 478 (733)
+++++|+|+++ .++... ...+.++++|++|+|+++..... ++. ....+++|+++
T Consensus 30 ~~l~~L~Ls~N-~i~~i~-~~~f~~l~~L~~L~Ls~N~i~~~-----------------------i~~~~f~~L~~l~~~ 84 (350)
T 4ay9_X 30 RNAIELRFVLT-KLRVIQ-KGAFSGFGDLEKIEISQNDVLEV-----------------------IEADVFSNLPKLHEI 84 (350)
T ss_dssp TTCSEEEEESC-CCSEEC-TTSSTTCTTCCEEEEECCTTCCE-----------------------ECTTSBCSCTTCCEE
T ss_pred CCCCEEEccCC-cCCCcC-HHHHcCCCCCCEEECcCCCCCCc-----------------------cChhHhhcchhhhhh
Confidence 46777777773 454321 11244566666666666541110 111 11245666665
Q ss_pred EeCCCCCCchHHHHHhhCCCCcCEEEEecCCCCccccc----CCCCCcEEEeccccCCccccccccccceeecccC-cCC
Q 004729 479 QLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSL----ELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNC-AAL 553 (733)
Q Consensus 479 ~L~~c~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~----~l~~L~~L~L~~c~~l~~l~l~~~~L~~l~l~~c-~~L 553 (733)
.+.+++.+.......+..+++|++|++++|. +..++. ....+..+.+..+..+..+.-.. +..+ ..+
T Consensus 85 l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~-------f~~~~~~l 156 (350)
T 4ay9_X 85 RIEKANNLLYINPEAFQNLPNLQYLLISNTG-IKHLPDVHKIHSLQKVLLDIQDNINIHTIERNS-------FVGLSFES 156 (350)
T ss_dssp EEEEETTCCEECTTSBCCCTTCCEEEEEEEC-CSSCCCCTTCCBSSCEEEEEESCTTCCEECTTS-------STTSBSSC
T ss_pred hcccCCcccccCchhhhhccccccccccccc-cccCCchhhcccchhhhhhhccccccccccccc-------hhhcchhh
Confidence 5555566666555567778888888888874 344332 13455566665555554443211 2333 468
Q ss_pred ceeeeccCccccccccccccHHHHHhcCCCCcEEeecCCCCCChhhhhhhcCCCCCCCccEEEeecCCCCccccc-cCCC
Q 004729 554 HRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRF-CSTS 632 (733)
Q Consensus 554 ~~L~l~~n~L~~l~~~~~~~L~~l~~~~~~L~~L~Ls~C~~lt~~~~~~~~~~~~l~~L~~L~L~~c~~L~~~~~-~~~s 632 (733)
+.|++.+|.|+.+..... ...+|+.|++.+++.++......| +.+++|+.|+|+++ .++.++. .+.+
T Consensus 157 ~~L~L~~N~i~~i~~~~f--------~~~~L~~l~l~~~n~l~~i~~~~f---~~l~~L~~LdLs~N-~l~~lp~~~~~~ 224 (350)
T 4ay9_X 157 VILWLNKNGIQEIHNSAF--------NGTQLDELNLSDNNNLEELPNDVF---HGASGPVILDISRT-RIHSLPSYGLEN 224 (350)
T ss_dssp EEEECCSSCCCEECTTSS--------TTEEEEEEECTTCTTCCCCCTTTT---TTEECCSEEECTTS-CCCCCCSSSCTT
T ss_pred hhhccccccccCCChhhc--------cccchhHHhhccCCcccCCCHHHh---ccCcccchhhcCCC-CcCccChhhhcc
Confidence 889999999987643222 345899999998888876544444 67899999999987 6888865 6889
Q ss_pred ccEEecccccccccccc--ccccccEEeccc
Q 004729 633 LVSLSLVGCRAITALEL--KCPILEKVCLDG 661 (733)
Q Consensus 633 L~~L~L~~c~~L~~l~~--~~p~L~~L~L~~ 661 (733)
|++|.+.++.+++.++. .+++|+.+++.+
T Consensus 225 L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 225 LKKLRARSTYNLKKLPTLEKLVALMEASLTY 255 (350)
T ss_dssp CCEEECTTCTTCCCCCCTTTCCSCCEEECSC
T ss_pred chHhhhccCCCcCcCCCchhCcChhhCcCCC
Confidence 99999999988888873 788999999877
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.04 E-value=1.5e-10 Score=120.34 Aligned_cols=97 Identities=14% Similarity=0.162 Sum_probs=45.8
Q ss_pred cCCCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEEeeccccchhc--ccCCCCcEEEE
Q 004729 310 LLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVS--IRCPQLEHLSL 387 (733)
Q Consensus 310 ~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~i~--~~~~~L~~L~L 387 (733)
.++++++++++++.++. ++..+ .++|+.|++++|.+....+..+..+++|++|++++|.+..+. ..+++|+.|++
T Consensus 8 ~l~~l~~l~~~~~~l~~-ip~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L 84 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLTA-LPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDL 84 (290)
T ss_dssp CSTTCCEEECTTSCCSS-CCSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEEC
T ss_pred ccCCccEEECCCCCCCc-CCCCC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCEEEC
Confidence 34555566655555442 11111 245566666666555444444455556666666555543322 23444444444
Q ss_pred cCCchHHH---hhCCCCccEEEEec
Q 004729 388 KRSNMAQA---VLNCPLLHLLDIAS 409 (733)
Q Consensus 388 ~~~~l~~~---~~~~~~L~~L~L~~ 409 (733)
++|.+..+ +..+++|++|++++
T Consensus 85 s~N~l~~l~~~~~~l~~L~~L~l~~ 109 (290)
T 1p9a_G 85 SHNQLQSLPLLGQTLPALTVLDVSF 109 (290)
T ss_dssp CSSCCSSCCCCTTTCTTCCEEECCS
T ss_pred CCCcCCcCchhhccCCCCCEEECCC
Confidence 44433321 23344455555544
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.03 E-value=9.4e-10 Score=113.16 Aligned_cols=182 Identities=23% Similarity=0.196 Sum_probs=91.6
Q ss_pred ccccccccccCCCCCcC-CCCCCCccEEEeCCCCCCchHHHHHhhCCCCcCEEEEecCCCCccccc----CCCCCcEEEe
Q 004729 452 ANLRILNSSYCPNISLE-SVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSL----ELPRLQNIRL 526 (733)
Q Consensus 452 ~~L~~L~L~~~~~l~~~-~~~l~~L~~L~L~~c~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~----~l~~L~~L~L 526 (733)
++|+.|.+.++...... ...+++|++|+++++. +.+. ..+..+++|++|++++|. ++.++. .+++|+.|.+
T Consensus 41 ~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~-l~~~--~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L 116 (272)
T 3rfs_A 41 NSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNK-LHDI--SALKELTNLTYLILTGNQ-LQSLPNGVFDKLTNLKELVL 116 (272)
T ss_dssp TTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSC-CCCC--GGGTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEEC
T ss_pred cceeeeeeCCCCcccccccccCCCCcEEECCCCC-CCCc--hhhcCCCCCCEEECCCCc-cCccChhHhcCCcCCCEEEC
Confidence 44555554444321111 2245556666666532 3332 245556666666666653 333322 1345555555
Q ss_pred ccccCCccccccccccceeecccCcCCceeeeccCccccccccccccHHHHHhcCCCCcEEeecCCCCCChhhhhhhcCC
Q 004729 527 VHCRKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDG 606 (733)
Q Consensus 527 ~~c~~l~~l~l~~~~L~~l~l~~c~~L~~L~l~~n~L~~l~~~~~~~L~~l~~~~~~L~~L~Ls~C~~lt~~~~~~~~~~ 606 (733)
.++. ++.+.-. .+..+++|+.|++.+|.++.+... ....+++|+.|++++| .++......+
T Consensus 117 ~~n~-l~~~~~~-------~~~~l~~L~~L~L~~n~l~~~~~~-------~~~~l~~L~~L~l~~n-~l~~~~~~~~--- 177 (272)
T 3rfs_A 117 VENQ-LQSLPDG-------VFDKLTNLTYLNLAHNQLQSLPKG-------VFDKLTNLTELDLSYN-QLQSLPEGVF--- 177 (272)
T ss_dssp TTSC-CCCCCTT-------TTTTCTTCCEEECCSSCCCCCCTT-------TTTTCTTCCEEECCSS-CCCCCCTTTT---
T ss_pred CCCc-CCccCHH-------HhccCCCCCEEECCCCccCccCHH-------HhccCccCCEEECCCC-CcCccCHHHh---
Confidence 4432 2211100 145566777777777766654321 1224567777777774 5554332222
Q ss_pred CCCCCccEEEeecCCCCccccc----cCCCccEEeccccccccccccccccccEEeccc
Q 004729 607 GGCPMLKSLVLDNCEGLTVVRF----CSTSLVSLSLVGCRAITALELKCPILEKVCLDG 661 (733)
Q Consensus 607 ~~l~~L~~L~L~~c~~L~~~~~----~~~sL~~L~L~~c~~L~~l~~~~p~L~~L~L~~ 661 (733)
+.+++|+.|++++|. ++.++. .+++|+.|++++++ +...||+|+.|++..
T Consensus 178 ~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~----~~~~~~~l~~l~~~~ 231 (272)
T 3rfs_A 178 DKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNP----WDCTCPGIRYLSEWI 231 (272)
T ss_dssp TTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSC----BCCCTTTTHHHHHHH
T ss_pred cCCccCCEEECCCCc-CCccCHHHHhCCcCCCEEEccCCC----ccccCcHHHHHHHHH
Confidence 456777777777663 444432 45667777776643 223456666666555
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.03 E-value=5.7e-10 Score=114.78 Aligned_cols=191 Identities=17% Similarity=0.099 Sum_probs=97.9
Q ss_pred hCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCCCCCChhHHHHHHHhcccccccccccCCCCCc--C-CCCCC
Q 004729 397 LNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNISL--E-SVRLP 473 (733)
Q Consensus 397 ~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~--~-~~~l~ 473 (733)
..+++|+.|.+.++. +.... .+..+++|+.|+++++. ++.. .. ...+++|++|+++++..... . ...++
T Consensus 38 ~~l~~L~~L~l~~~~-i~~~~---~l~~l~~L~~L~l~~n~-l~~~--~~-l~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 109 (272)
T 3rfs_A 38 NELNSIDQIIANNSD-IKSVQ---GIQYLPNVRYLALGGNK-LHDI--SA-LKELTNLTYLILTGNQLQSLPNGVFDKLT 109 (272)
T ss_dssp HHHTTCCEEECTTSC-CCCCT---TGGGCTTCCEEECTTSC-CCCC--GG-GTTCTTCCEEECTTSCCCCCCTTTTTTCT
T ss_pred ccccceeeeeeCCCC-ccccc---ccccCCCCcEEECCCCC-CCCc--hh-hcCCCCCCEEECCCCccCccChhHhcCCc
Confidence 346677777777743 33321 24456777777777765 3321 11 12445555555555431111 1 12344
Q ss_pred CccEEEeCCCCCCchHHHHHhhCCCCcCEEEEecCCCCcccccCCCCCcEEEeccccCCccccccccccceeecccCcCC
Q 004729 474 MLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAAL 553 (733)
Q Consensus 474 ~L~~L~L~~c~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~l~~L~~L~L~~c~~l~~l~l~~~~L~~l~l~~c~~L 553 (733)
+|++|+++++ .+.......++.+++|++|++++|. ++.++. . .+..+++|
T Consensus 110 ~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~---------------------~-------~~~~l~~L 159 (272)
T 3rfs_A 110 NLKELVLVEN-QLQSLPDGVFDKLTNLTYLNLAHNQ-LQSLPK---------------------G-------VFDKLTNL 159 (272)
T ss_dssp TCCEEECTTS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCT---------------------T-------TTTTCTTC
T ss_pred CCCEEECCCC-cCCccCHHHhccCCCCCEEECCCCc-cCccCH---------------------H-------HhccCccC
Confidence 5555555542 2333222223344444444444442 222111 0 14566777
Q ss_pred ceeeeccCccccccccccccHHHHHhcCCCCcEEeecCCCCCChhhhhhhcCCCCCCCccEEEeecCCCCccccccCCCc
Q 004729 554 HRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRFCSTSL 633 (733)
Q Consensus 554 ~~L~l~~n~L~~l~~~~~~~L~~l~~~~~~L~~L~Ls~C~~lt~~~~~~~~~~~~l~~L~~L~L~~c~~L~~~~~~~~sL 633 (733)
+.|++.+|.++.+... ....+++|+.|++++| .++......+ ..+++|+.|++.+++-. ..+++|
T Consensus 160 ~~L~l~~n~l~~~~~~-------~~~~l~~L~~L~L~~N-~l~~~~~~~~---~~l~~L~~L~l~~N~~~----~~~~~l 224 (272)
T 3rfs_A 160 TELDLSYNQLQSLPEG-------VFDKLTQLKDLRLYQN-QLKSVPDGVF---DRLTSLQYIWLHDNPWD----CTCPGI 224 (272)
T ss_dssp CEEECCSSCCCCCCTT-------TTTTCTTCCEEECCSS-CCSCCCTTTT---TTCTTCCEEECCSSCBC----CCTTTT
T ss_pred CEEECCCCCcCccCHH-------HhcCCccCCEEECCCC-cCCccCHHHH---hCCcCCCEEEccCCCcc----ccCcHH
Confidence 7777777777654321 1235678888888874 5665433323 56788888888777422 224456
Q ss_pred cEEeccc
Q 004729 634 VSLSLVG 640 (733)
Q Consensus 634 ~~L~L~~ 640 (733)
+.|++..
T Consensus 225 ~~l~~~~ 231 (272)
T 3rfs_A 225 RYLSEWI 231 (272)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665554
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=98.99 E-value=6.2e-10 Score=115.75 Aligned_cols=57 Identities=23% Similarity=0.137 Sum_probs=34.4
Q ss_pred hcccccccccccCCCCCc-CCCCCCCccEEEeCCCCCCchHHHHHhhCCCCcCEEEEecCC
Q 004729 450 SCANLRILNSSYCPNISL-ESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCN 509 (733)
Q Consensus 450 ~~~~L~~L~L~~~~~l~~-~~~~l~~L~~L~L~~c~~l~~~~~~~l~~~~~L~~L~L~~~~ 509 (733)
.+++|+.|+++++..... ....+++|++|+++++ .+++. ..+..+++|+.|++++|.
T Consensus 154 ~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~L~~N-~i~~l--~~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 154 RLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKN-HISDL--RALAGLKNLDVLELFSQE 211 (291)
T ss_dssp GCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSS-CCCBC--GGGTTCTTCSEEEEEEEE
T ss_pred cCCCCCEEEccCCccccchhhcCCCccCEEECCCC-cCCCC--hhhccCCCCCEEECcCCc
Confidence 344455555544431111 1335677888888774 45553 247788899999998874
|
| >1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E | Back alignment and structure |
|---|
Probab=98.95 E-value=2.6e-10 Score=85.53 Aligned_cols=47 Identities=30% Similarity=0.576 Sum_probs=40.0
Q ss_pred ccccCCCHHHHHHHHhcCChhhHHHHHHHHHHHHHhhcCCCCeeEEe
Q 004729 222 EIRMDLTDDLLHMVFSFLDYVDLCRAAIVCRQWRAASAHEDFWRCLN 268 (733)
Q Consensus 222 ~~~~~LP~ElL~~If~~L~~~dl~~~~lVck~W~~l~~~~~lw~~l~ 268 (733)
..+..||+|++.+||+||+..|+.++++|||+|+.++.++.+|+.++
T Consensus 7 ~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~~~~lW~~ld 53 (53)
T 1fs1_A 7 VSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLD 53 (53)
T ss_dssp --CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGGC----
T ss_pred CCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHhcC
Confidence 45779999999999999999999999999999999999999999874
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=98.93 E-value=7.8e-10 Score=114.99 Aligned_cols=165 Identities=19% Similarity=0.235 Sum_probs=88.9
Q ss_pred CCCccEEEEcCCCchhHHHHHHhhcCCCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEE
Q 004729 286 YPNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRL 365 (733)
Q Consensus 286 ~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L 365 (733)
.++++.|++.++. +... ..+..+++|++|++++|.+....+ +..+++|++|++++|.+.. ++. ...+++|++|
T Consensus 45 l~~L~~L~l~~~~-i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L 117 (291)
T 1h6t_A 45 LNSIDQIIANNSD-IKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LSS-LKDLKKLKSL 117 (291)
T ss_dssp HHTCCEEECTTSC-CCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GGG-GTTCTTCCEE
T ss_pred cCcccEEEccCCC-cccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Chh-hccCCCCCEE
Confidence 3456777776642 2222 235667777777777777664322 6677777777777776654 222 4456666666
Q ss_pred EeeccccchhcccCCCCcEEEEcCCchHHHhhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCCCCCChhHHH
Q 004729 366 EITKCRVMRVSIRCPQLEHLSLKRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLR 445 (733)
Q Consensus 366 ~L~~~~~~~i~~~~~~L~~L~L~~~~l~~~~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~l~ 445 (733)
++++|.+..+. .+..+++|+.|+++++ .+... ..+..+++|+.|+++++. +++...
T Consensus 118 ~L~~n~i~~~~------------------~l~~l~~L~~L~l~~n-~l~~~---~~l~~l~~L~~L~L~~N~-l~~~~~- 173 (291)
T 1h6t_A 118 SLEHNGISDIN------------------GLVHLPQLESLYLGNN-KITDI---TVLSRLTKLDTLSLEDNQ-ISDIVP- 173 (291)
T ss_dssp ECTTSCCCCCG------------------GGGGCTTCCEEECCSS-CCCCC---GGGGGCTTCSEEECCSSC-CCCCGG-
T ss_pred ECCCCcCCCCh------------------hhcCCCCCCEEEccCC-cCCcc---hhhccCCCCCEEEccCCc-cccchh-
Confidence 66666544321 1334455555555553 23322 123445566666665554 333211
Q ss_pred HHHHhcccccccccccCCCCCc-CCCCCCCccEEEeCCC
Q 004729 446 EIALSCANLRILNSSYCPNISL-ESVRLPMLTVLQLHSC 483 (733)
Q Consensus 446 ~l~~~~~~L~~L~L~~~~~l~~-~~~~l~~L~~L~L~~c 483 (733)
...+++|+.|+++++..-.. ....+++|+.|+++++
T Consensus 174 --l~~l~~L~~L~L~~N~i~~l~~l~~l~~L~~L~l~~n 210 (291)
T 1h6t_A 174 --LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQ 210 (291)
T ss_dssp --GTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEEEEEE
T ss_pred --hcCCCccCEEECCCCcCCCChhhccCCCCCEEECcCC
Confidence 23455666666655542111 2335677777777763
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=98.91 E-value=7e-09 Score=101.05 Aligned_cols=145 Identities=17% Similarity=0.192 Sum_probs=78.4
Q ss_pred CCCCccEEEeCCCCCCchHHHHHhhCCCCcCEEEEecCCCCcccccCCCCCcEEEeccccCCccccccccccceeecccC
Q 004729 471 RLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNC 550 (733)
Q Consensus 471 ~l~~L~~L~L~~c~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~l~~L~~L~L~~c~~l~~l~l~~~~L~~l~l~~c 550 (733)
.+++|++|+++++ .+.+.. .+..+++|++|++++| .+..++ .+..+
T Consensus 42 ~l~~L~~L~l~~n-~i~~l~--~l~~l~~L~~L~l~~n-~~~~~~------------------------------~l~~l 87 (197)
T 4ezg_A 42 QMNSLTYITLANI-NVTDLT--GIEYAHNIKDLTINNI-HATNYN------------------------------PISGL 87 (197)
T ss_dssp HHHTCCEEEEESS-CCSCCT--TGGGCTTCSEEEEESC-CCSCCG------------------------------GGTTC
T ss_pred hcCCccEEeccCC-CccChH--HHhcCCCCCEEEccCC-CCCcch------------------------------hhhcC
Confidence 4566777777763 344322 4556667777777666 222221 13455
Q ss_pred cCCceeeeccCccccccccccccHHHHHhcCCCCcEEeecCCCCCChhhhhhhcCCCCCCCccEEEeecCCCCccccc--
Q 004729 551 AALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRF-- 628 (733)
Q Consensus 551 ~~L~~L~l~~n~L~~l~~~~~~~L~~l~~~~~~L~~L~Ls~C~~lt~~~~~~~~~~~~l~~L~~L~L~~c~~L~~~~~-- 628 (733)
++|+.|++++|.++...+.. ...+++|+.|++++ +.+++..+..+ ..+++|+.|++++|..++.++.
T Consensus 88 ~~L~~L~l~~n~l~~~~~~~-------l~~l~~L~~L~Ls~-n~i~~~~~~~l---~~l~~L~~L~L~~n~~i~~~~~l~ 156 (197)
T 4ezg_A 88 SNLERLRIMGKDVTSDKIPN-------LSGLTSLTLLDISH-SAHDDSILTKI---NTLPKVNSIDLSYNGAITDIMPLK 156 (197)
T ss_dssp TTCCEEEEECTTCBGGGSCC-------CTTCTTCCEEECCS-SBCBGGGHHHH---TTCSSCCEEECCSCTBCCCCGGGG
T ss_pred CCCCEEEeECCccCcccChh-------hcCCCCCCEEEecC-CccCcHhHHHH---hhCCCCCEEEccCCCCccccHhhc
Confidence 66666666666655422211 12456677777766 35555444444 4566677777766654554432
Q ss_pred cCCCccEEeccccccccccc--cccccccEEeccc
Q 004729 629 CSTSLVSLSLVGCRAITALE--LKCPILEKVCLDG 661 (733)
Q Consensus 629 ~~~sL~~L~L~~c~~L~~l~--~~~p~L~~L~L~~ 661 (733)
.+++|+.|++++| .++.+. ..+++|++|++++
T Consensus 157 ~l~~L~~L~l~~n-~i~~~~~l~~l~~L~~L~l~~ 190 (197)
T 4ezg_A 157 TLPELKSLNIQFD-GVHDYRGIEDFPKLNQLYAFS 190 (197)
T ss_dssp GCSSCCEEECTTB-CCCCCTTGGGCSSCCEEEECB
T ss_pred CCCCCCEEECCCC-CCcChHHhccCCCCCEEEeeC
Confidence 4555666666553 233332 2456666666665
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=98.90 E-value=1.4e-09 Score=124.40 Aligned_cols=117 Identities=17% Similarity=0.245 Sum_probs=56.8
Q ss_pred CCCccEEEEcCCCchhHHHHHHhhcCCCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEE
Q 004729 286 YPNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRL 365 (733)
Q Consensus 286 ~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L 365 (733)
.++|+.|++.++. +... ..+..+++|+.|+|++|.+....+ +..+++|+.|+|++|.+... + .+..+++|++|
T Consensus 42 L~~L~~L~l~~n~-i~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l-~-~l~~l~~L~~L 114 (605)
T 1m9s_A 42 LNSIDQIIANNSD-IKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL-S-SLKDLKKLKSL 114 (605)
T ss_dssp HTTCCCCBCTTCC-CCCC--TTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC-T-TSTTCTTCCEE
T ss_pred CCCCCEEECcCCC-CCCC--hHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCC-h-hhccCCCCCEE
Confidence 3455666665532 2221 135566666666666666654322 55666666666666655431 1 23455566666
Q ss_pred Eeeccccchhc--ccCCCCcEEEEcCCchHH--HhhCCCCccEEEEec
Q 004729 366 EITKCRVMRVS--IRCPQLEHLSLKRSNMAQ--AVLNCPLLHLLDIAS 409 (733)
Q Consensus 366 ~L~~~~~~~i~--~~~~~L~~L~L~~~~l~~--~~~~~~~L~~L~L~~ 409 (733)
+|++|.+..+. ..+++|+.|+|++|.+.. .+..+++|+.|+|++
T Consensus 115 ~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~ 162 (605)
T 1m9s_A 115 SLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLED 162 (605)
T ss_dssp ECTTSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGGSCTTCSEEECCS
T ss_pred EecCCCCCCCccccCCCccCEEECCCCccCCchhhcccCCCCEEECcC
Confidence 66655543321 234444444444443321 133344444444444
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=98.88 E-value=1.8e-09 Score=123.56 Aligned_cols=163 Identities=19% Similarity=0.228 Sum_probs=110.3
Q ss_pred hcCCCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEEeeccccchhc--ccCCCCcEEE
Q 004729 309 SLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVS--IRCPQLEHLS 386 (733)
Q Consensus 309 ~~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~i~--~~~~~L~~L~ 386 (733)
..+++|+.|+++++.+... ..+..+++|+.|+|++|.+....+ ...+++|+.|+|++|.+..++ ..+++|+.|+
T Consensus 40 ~~L~~L~~L~l~~n~i~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~ 115 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLS 115 (605)
T ss_dssp HHHTTCCCCBCTTCCCCCC--TTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCTTSTTCTTCCEEE
T ss_pred hcCCCCCEEECcCCCCCCC--hHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCChhhccCCCCCEEE
Confidence 3456778888887776642 246678888888888887765443 557788888888888765433 4577788888
Q ss_pred EcCCchHH--HhhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCCCCCChhHHHHHHHhcccccccccccCCC
Q 004729 387 LKRSNMAQ--AVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPN 464 (733)
Q Consensus 387 L~~~~l~~--~~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~~ 464 (733)
|++|.+.. .+..+++|+.|+|++| .+... ..+..+++|+.|+|++|. +..... +..+++|+.|+|++|..
T Consensus 116 Ls~N~l~~l~~l~~l~~L~~L~Ls~N-~l~~l---~~l~~l~~L~~L~Ls~N~-l~~~~~---l~~l~~L~~L~Ls~N~i 187 (605)
T 1m9s_A 116 LEHNGISDINGLVHLPQLESLYLGNN-KITDI---TVLSRLTKLDTLSLEDNQ-ISDIVP---LAGLTKLQNLYLSKNHI 187 (605)
T ss_dssp CTTSCCCCCGGGGGCTTCSEEECCSS-CCCCC---GGGGSCTTCSEEECCSSC-CCCCGG---GTTCTTCCEEECCSSCC
T ss_pred ecCCCCCCCccccCCCccCEEECCCC-ccCCc---hhhcccCCCCEEECcCCc-CCCchh---hccCCCCCEEECcCCCC
Confidence 88776553 2567788888888875 35443 345677888888888776 443322 34677888888887753
Q ss_pred CCc-CCCCCCCccEEEeCCC
Q 004729 465 ISL-ESVRLPMLTVLQLHSC 483 (733)
Q Consensus 465 l~~-~~~~l~~L~~L~L~~c 483 (733)
-.. ....+++|+.|+|.++
T Consensus 188 ~~l~~l~~l~~L~~L~L~~N 207 (605)
T 1m9s_A 188 SDLRALAGLKNLDVLELFSQ 207 (605)
T ss_dssp CBCGGGTTCTTCSEEECCSE
T ss_pred CCChHHccCCCCCEEEccCC
Confidence 222 2346778888888874
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=98.88 E-value=1.1e-09 Score=111.22 Aligned_cols=147 Identities=16% Similarity=0.164 Sum_probs=75.9
Q ss_pred CccEEEEcCCCchhHHHHHHhhcCCCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEEe
Q 004729 288 NATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEI 367 (733)
Q Consensus 288 ~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L 367 (733)
+++.|++++. .+.......+..+++|++|+|++|.+....+..+..+++|++|+|++|.+.......+..+++|++|++
T Consensus 36 ~l~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 114 (251)
T 3m19_A 36 DTEKLDLQST-GLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYL 114 (251)
T ss_dssp TCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEEccCC-CcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEc
Confidence 4666666652 233333334555666666666666665544444556666666666666655444444555666666666
Q ss_pred eccccchhc----ccCCCCcEEEEcCCchHHH----hhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCCC
Q 004729 368 TKCRVMRVS----IRCPQLEHLSLKRSNMAQA----VLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCS 437 (733)
Q Consensus 368 ~~~~~~~i~----~~~~~L~~L~L~~~~l~~~----~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~ 437 (733)
++|.+..++ ..+++|+.|+|++|.+..+ +..+++|++|+++++ .+.... ...+..+++|+.|+++++.
T Consensus 115 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~-~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 115 GGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTN-QLQSVP-HGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCC-TTTTTTCTTCCEEECCSCC
T ss_pred CCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCC-cCCccC-HHHHhCCCCCCEEEeeCCc
Confidence 666554333 2345555555555544322 334455555555553 232211 1123344555555555544
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=98.86 E-value=4.1e-09 Score=102.73 Aligned_cols=150 Identities=15% Similarity=0.165 Sum_probs=80.0
Q ss_pred CCCccEEEEcCCCchhHHHHHHhhcCCCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEE
Q 004729 286 YPNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRL 365 (733)
Q Consensus 286 ~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L 365 (733)
+++++.|++++. .+.... .+..+++|++|++++|.+.. +..+..+++|++|++++|.+..........+++|++|
T Consensus 43 l~~L~~L~l~~n-~i~~l~--~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 43 MNSLTYITLANI-NVTDLT--GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHTCCEEEEESS-CCSCCT--TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred cCCccEEeccCC-CccChH--HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 345666666653 222211 35566666777766665543 2245566666666666666654444444455556666
Q ss_pred EeeccccchhcccCCCCcEEEEcCCchHHHhhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCCCCCChhHHH
Q 004729 366 EITKCRVMRVSIRCPQLEHLSLKRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLR 445 (733)
Q Consensus 366 ~L~~~~~~~i~~~~~~L~~L~L~~~~l~~~~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~l~ 445 (733)
++++|.+... ....+..+++|++|++++|..+.+.. .+..+++|+.|++++|. +++..
T Consensus 118 ~Ls~n~i~~~----------------~~~~l~~l~~L~~L~L~~n~~i~~~~---~l~~l~~L~~L~l~~n~-i~~~~-- 175 (197)
T 4ezg_A 118 DISHSAHDDS----------------ILTKINTLPKVNSIDLSYNGAITDIM---PLKTLPELKSLNIQFDG-VHDYR-- 175 (197)
T ss_dssp ECCSSBCBGG----------------GHHHHTTCSSCCEEECCSCTBCCCCG---GGGGCSSCCEEECTTBC-CCCCT--
T ss_pred EecCCccCcH----------------hHHHHhhCCCCCEEEccCCCCccccH---hhcCCCCCCEEECCCCC-CcChH--
Confidence 6555543320 12234556666666666654244332 34556667777776665 44321
Q ss_pred HHHHhcccccccccccCC
Q 004729 446 EIALSCANLRILNSSYCP 463 (733)
Q Consensus 446 ~l~~~~~~L~~L~L~~~~ 463 (733)
....+++|+.|+++++.
T Consensus 176 -~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 176 -GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp -TGGGCSSCCEEEECBC-
T ss_pred -HhccCCCCCEEEeeCcc
Confidence 12356667776666543
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=98.82 E-value=2.5e-08 Score=101.11 Aligned_cols=146 Identities=24% Similarity=0.297 Sum_probs=69.7
Q ss_pred CCccEEEeCCCCCCchHHHHHhhCCCCcCEEEEecCCCCccccc----CCCCCcEEEeccccCCccccccccccceeecc
Q 004729 473 PMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSL----ELPRLQNIRLVHCRKFADLNLRAMMLSSIMVS 548 (733)
Q Consensus 473 ~~L~~L~L~~c~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~----~l~~L~~L~L~~c~~l~~l~l~~~~L~~l~l~ 548 (733)
++|++|++++ +.+.......+..+++|++|++++|. +..++. .+++|+.|.+.++. ++.+... .+.
T Consensus 35 ~~l~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~-------~~~ 104 (251)
T 3m19_A 35 ADTEKLDLQS-TGLATLSDATFRGLTKLTWLNLDYNQ-LQTLSAGVFDDLTELGTLGLANNQ-LASLPLG-------VFD 104 (251)
T ss_dssp TTCCEEECTT-SCCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSC-CCCCCTT-------TTT
T ss_pred CCCCEEEccC-CCcCccCHhHhcCcccCCEEECCCCc-CCccCHhHhccCCcCCEEECCCCc-ccccChh-------Hhc
Confidence 4667777766 33544444455666677777776663 232221 13444444444321 1111100 134
Q ss_pred cCcCCceeeeccCccccccccccccHHHHHhcCCCCcEEeecCCCCCChhhhhhhcCCCCCCCccEEEeecCCCCccccc
Q 004729 549 NCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRF 628 (733)
Q Consensus 549 ~c~~L~~L~l~~n~L~~l~~~~~~~L~~l~~~~~~L~~L~Ls~C~~lt~~~~~~~~~~~~l~~L~~L~L~~c~~L~~~~~ 628 (733)
.+++|+.|++++|.++.+... .+..+++|+.|++++ +.++......| +.+++|+.|+|+++ .++.++.
T Consensus 105 ~l~~L~~L~L~~N~l~~~~~~-------~~~~l~~L~~L~Ls~-N~l~~~~~~~~---~~l~~L~~L~L~~N-~l~~~~~ 172 (251)
T 3m19_A 105 HLTQLDKLYLGGNQLKSLPSG-------VFDRLTKLKELRLNT-NQLQSIPAGAF---DKLTNLQTLSLSTN-QLQSVPH 172 (251)
T ss_dssp TCTTCCEEECCSSCCCCCCTT-------TTTTCTTCCEEECCS-SCCCCCCTTTT---TTCTTCCEEECCSS-CCSCCCT
T ss_pred ccCCCCEEEcCCCcCCCcChh-------HhccCCcccEEECcC-CcCCccCHHHc---CcCcCCCEEECCCC-cCCccCH
Confidence 556666666666665544321 112345666666666 35543322222 44566666666555 2333321
Q ss_pred ----cCCCccEEeccc
Q 004729 629 ----CSTSLVSLSLVG 640 (733)
Q Consensus 629 ----~~~sL~~L~L~~ 640 (733)
.+++|+.|++++
T Consensus 173 ~~~~~l~~L~~L~l~~ 188 (251)
T 3m19_A 173 GAFDRLGKLQTITLFG 188 (251)
T ss_dssp TTTTTCTTCCEEECCS
T ss_pred HHHhCCCCCCEEEeeC
Confidence 334444454444
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.81 E-value=8.6e-09 Score=109.06 Aligned_cols=98 Identities=9% Similarity=0.141 Sum_probs=50.7
Q ss_pred CCCccEEEEcCCCchhHHHHHHhhc-CCCCCEEEecCccCC--hHHHHhccCCCCCcEEEEecCcCCccccccccc----
Q 004729 286 YPNATEVNIYGAPAIHLLVMKAVSL-LRNLEALTLGRGQLG--DAFFHALADCSMLKSLNVNDATLGNGVQEIPIN---- 358 (733)
Q Consensus 286 ~~~L~~L~L~~~~~~~~~~~~~l~~-l~~L~~L~Ls~~~i~--~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~---- 358 (733)
..+++.|.+.+. +.......+.. +++|+.|+|++|.+. .... ..++.++.+.+..+.+.. ..+..
T Consensus 24 ~~~l~~L~l~g~--i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~---~~~~~~~~~~~~~~~I~~---~aF~~~~~~ 95 (329)
T 3sb4_A 24 ANSITHLTLTGK--LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKA---GTYPNGKFYIYMANFVPA---YAFSNVVNG 95 (329)
T ss_dssp HHHCSEEEEEEE--ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESS---SSSGGGCCEEECTTEECT---TTTEEEETT
T ss_pred hCceeEEEEecc--ccHHHHHHHHHhhccCeEEecCcceeEEecCcc---ccccccccccccccccCH---HHhcccccc
Confidence 346788888773 33333445554 788999999988776 1100 112222333333332211 12223
Q ss_pred ----CCCccEEEeeccccchhc----ccCCCCcEEEEcCCch
Q 004729 359 ----HDQLRRLEITKCRVMRVS----IRCPQLEHLSLKRSNM 392 (733)
Q Consensus 359 ----~~~L~~L~L~~~~~~~i~----~~~~~L~~L~L~~~~l 392 (733)
+++|++|.|.. .+..+. ..|++|+.+.+.++.+
T Consensus 96 ~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i 136 (329)
T 3sb4_A 96 VTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTA 136 (329)
T ss_dssp EEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSC
T ss_pred cccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCc
Confidence 66666666665 443332 3466666666665543
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=98.79 E-value=3.8e-08 Score=111.50 Aligned_cols=173 Identities=21% Similarity=0.204 Sum_probs=107.7
Q ss_pred CCcCEEEEecCCCCcccccC-CCCCcEEEeccccCCccccccccccceeecccCcCCceeeeccCccccccccccccHHH
Q 004729 498 YMLEVLELDNCNLLTSVSLE-LPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTS 576 (733)
Q Consensus 498 ~~L~~L~L~~~~~l~~~~~~-l~~L~~L~L~~c~~l~~l~l~~~~L~~l~l~~c~~L~~L~l~~n~L~~l~~~~~~~L~~ 576 (733)
.+|+.|+++++. ++.+|.. +++|+.|.+.++ .++ .+. ..+++|+.|++++|.|+.+.. +
T Consensus 59 ~~L~~L~Ls~n~-L~~lp~~l~~~L~~L~Ls~N-~l~----------~ip-~~l~~L~~L~Ls~N~l~~ip~-----l-- 118 (571)
T 3cvr_A 59 NQFSELQLNRLN-LSSLPDNLPPQITVLEITQN-ALI----------SLP-ELPASLEYLDACDNRLSTLPE-----L-- 118 (571)
T ss_dssp TTCSEEECCSSC-CSCCCSCCCTTCSEEECCSS-CCS----------CCC-CCCTTCCEEECCSSCCSCCCC-----C--
T ss_pred CCccEEEeCCCC-CCccCHhHcCCCCEEECcCC-CCc----------ccc-cccCCCCEEEccCCCCCCcch-----h--
Confidence 589999999884 5666653 467777777654 222 222 446888888888888876432 1
Q ss_pred HHhcCCCCcEEeecCCCCCChhhhhhhcCCCCCCCccEEEeecCCCCccccccCCCccEEeccccccccccccccccccE
Q 004729 577 LALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRFCSTSLVSLSLVGCRAITALELKCPILEK 656 (733)
Q Consensus 577 l~~~~~~L~~L~Ls~C~~lt~~~~~~~~~~~~l~~L~~L~L~~c~~L~~~~~~~~sL~~L~L~~c~~L~~l~~~~p~L~~ 656 (733)
..+|+.|++++ +.++. ++. .+++|+.|+|+++ .++.++..+++|+.|+++++ .|+.++.-.++|++
T Consensus 119 ----~~~L~~L~Ls~-N~l~~-----lp~--~l~~L~~L~Ls~N-~l~~lp~~l~~L~~L~Ls~N-~L~~lp~l~~~L~~ 184 (571)
T 3cvr_A 119 ----PASLKHLDVDN-NQLTM-----LPE--LPALLEYINADNN-QLTMLPELPTSLEVLSVRNN-QLTFLPELPESLEA 184 (571)
T ss_dssp ----CTTCCEEECCS-SCCSC-----CCC--CCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSS-CCSCCCCCCTTCCE
T ss_pred ----hcCCCEEECCC-CcCCC-----CCC--cCccccEEeCCCC-ccCcCCCcCCCcCEEECCCC-CCCCcchhhCCCCE
Confidence 12888899988 46654 222 5788888888887 46666666778888888874 35554432267777
Q ss_pred EecccccccccccccccCC-------cEEEecCCCCccccccCc---ccccEEEecCCCC
Q 004729 657 VCLDGCDHIESASFVPVAL-------QSLNLGICPKLSTLGIEA---LHMVVLELKGCGV 706 (733)
Q Consensus 657 L~L~~c~~L~~~~~~~~~L-------~~L~L~~c~~L~~l~~~~---~~L~~L~l~~c~~ 706 (733)
|+|+++ .|+.+...+.+| +.|+++++ +|+.+|... .+|+.|+|++|+.
T Consensus 185 L~Ls~N-~L~~lp~~~~~L~~~~~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~L~~N~l 242 (571)
T 3cvr_A 185 LDVSTN-LLESLPAVPVRNHHSEETEIFFRCREN-RITHIPENILSLDPTCTIILEDNPL 242 (571)
T ss_dssp EECCSS-CCSSCCCCC--------CCEEEECCSS-CCCCCCGGGGGSCTTEEEECCSSSC
T ss_pred EECcCC-CCCchhhHHHhhhcccccceEEecCCC-cceecCHHHhcCCCCCEEEeeCCcC
Confidence 777773 444432222255 66666665 365555322 2455556655543
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=98.73 E-value=9.5e-08 Score=108.20 Aligned_cols=171 Identities=19% Similarity=0.137 Sum_probs=94.0
Q ss_pred ccccccccccCCCCCcCCCCCCCccEEEeCCCCCCchHHHHHhhCCCCcCEEEEecCCCCcccccCCC-CCcEEEecccc
Q 004729 452 ANLRILNSSYCPNISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELP-RLQNIRLVHCR 530 (733)
Q Consensus 452 ~~L~~L~L~~~~~l~~~~~~l~~L~~L~L~~c~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~l~-~L~~L~L~~c~ 530 (733)
.+|+.|+++++........-+++|++|+++++ .++... ..+++|++|++++|. ++.+|. ++ +|+.|.+.++
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~l~~~L~~L~Ls~N-~l~~ip----~~l~~L~~L~Ls~N~-l~~ip~-l~~~L~~L~Ls~N- 130 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDNLPPQITVLEITQN-ALISLP----ELPASLEYLDACDNR-LSTLPE-LPASLKHLDVDNN- 130 (571)
T ss_dssp TTCSEEECCSSCCSCCCSCCCTTCSEEECCSS-CCSCCC----CCCTTCCEEECCSSC-CSCCCC-CCTTCCEEECCSS-
T ss_pred CCccEEEeCCCCCCccCHhHcCCCCEEECcCC-CCcccc----cccCCCCEEEccCCC-CCCcch-hhcCCCEEECCCC-
Confidence 35666666555422111112356777777763 344322 345677777777763 444554 33 5555555443
Q ss_pred CCccccccccccceeecccCcCCceeeeccCccccccccccccHHHHHhcCCCCcEEeecCCCCCChhhhhhhcCCCCCC
Q 004729 531 KFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCP 610 (733)
Q Consensus 531 ~l~~l~l~~~~L~~l~l~~c~~L~~L~l~~n~L~~l~~~~~~~L~~l~~~~~~L~~L~Ls~C~~lt~~~~~~~~~~~~l~ 610 (733)
.++. +.- .+++|+.|++++|.|+.+.. .+++|+.|+|++| .++... . + . +
T Consensus 131 ~l~~----------lp~-~l~~L~~L~Ls~N~l~~lp~-----------~l~~L~~L~Ls~N-~L~~lp-~-l---~--~ 180 (571)
T 3cvr_A 131 QLTM----------LPE-LPALLEYINADNNQLTMLPE-----------LPTSLEVLSVRNN-QLTFLP-E-L---P--E 180 (571)
T ss_dssp CCSC----------CCC-CCTTCCEEECCSSCCSCCCC-----------CCTTCCEEECCSS-CCSCCC-C-C---C--T
T ss_pred cCCC----------CCC-cCccccEEeCCCCccCcCCC-----------cCCCcCEEECCCC-CCCCcc-h-h---h--C
Confidence 1221 111 45677777777777765421 3467777777773 565421 1 2 2 6
Q ss_pred CccEEEeecCCCCccccccCCCc-------cEEecccccccccccc---ccccccEEecccc
Q 004729 611 MLKSLVLDNCEGLTVVRFCSTSL-------VSLSLVGCRAITALEL---KCPILEKVCLDGC 662 (733)
Q Consensus 611 ~L~~L~L~~c~~L~~~~~~~~sL-------~~L~L~~c~~L~~l~~---~~p~L~~L~L~~c 662 (733)
+|+.|+|+++ .++.++....+| +.|+++++ .|+.++. .+++|+.|+|+++
T Consensus 181 ~L~~L~Ls~N-~L~~lp~~~~~L~~~~~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~L~~N 240 (571)
T 3cvr_A 181 SLEALDVSTN-LLESLPAVPVRNHHSEETEIFFRCREN-RITHIPENILSLDPTCTIILEDN 240 (571)
T ss_dssp TCCEEECCSS-CCSSCCCCC--------CCEEEECCSS-CCCCCCGGGGGSCTTEEEECCSS
T ss_pred CCCEEECcCC-CCCchhhHHHhhhcccccceEEecCCC-cceecCHHHhcCCCCCEEEeeCC
Confidence 7777777776 455554433356 77777763 4555542 4677777777774
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=98.71 E-value=2e-08 Score=92.89 Aligned_cols=130 Identities=19% Similarity=0.250 Sum_probs=79.5
Q ss_pred CCCCCEEEecCccCC-hHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEEeeccccchhcccCCCCcEEEEcC
Q 004729 311 LRNLEALTLGRGQLG-DAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIRCPQLEHLSLKR 389 (733)
Q Consensus 311 l~~L~~L~Ls~~~i~-~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~i~~~~~~L~~L~L~~ 389 (733)
.++|++|++++|.+. ...+..+..+++|++|++++|.+... .....+++|++|++++|.+..
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~--------------- 78 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSG--------------- 78 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCS---------------
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccc---------------
Confidence 456777777777766 34444556677777777777766543 334455666666666554321
Q ss_pred CchHHHhhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCCCCCChhHH--HHHHHhcccccccccc
Q 004729 390 SNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESL--REIALSCANLRILNSS 460 (733)
Q Consensus 390 ~~l~~~~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~l--~~l~~~~~~L~~L~L~ 460 (733)
.+...+..+++|++|+++++ .+........+..+++|+.|+++++. ++.... ...+..+++|+.|+++
T Consensus 79 -~~~~~~~~l~~L~~L~ls~N-~i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 79 -GLEVLAEKCPNLTHLNLSGN-KIKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp -CTHHHHHHCTTCCEEECTTS-CCCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETTB
T ss_pred -hHHHHhhhCCCCCEEECCCC-cCCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccCC
Confidence 12344556777777777774 46654443456677888888888776 443221 2344567777777765
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=98.70 E-value=1.2e-08 Score=104.38 Aligned_cols=121 Identities=16% Similarity=0.214 Sum_probs=58.7
Q ss_pred hcCCCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEEeeccccchhcc-cCCCCcEEEE
Q 004729 309 SLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSI-RCPQLEHLSL 387 (733)
Q Consensus 309 ~~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~i~~-~~~~L~~L~L 387 (733)
..+++|++|+++++.+... . .+..+++|++|++++|.+....+ ...+++|++|++++|.+..++. ..++|+.|++
T Consensus 38 ~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~l~~~~~~~L~~L~L 113 (263)
T 1xeu_A 38 KELSGVQNFNGDNSNIQSL-A-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNGIPSACLSRLFL 113 (263)
T ss_dssp HHHTTCSEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSCCTTCCCSSCCEEEC
T ss_pred hhcCcCcEEECcCCCcccc-h-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCCcCccccCcccEEEc
Confidence 3455666666666655532 1 45556666666666666554332 4456666666666665443221 0134444444
Q ss_pred cCCchHH--HhhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCCC
Q 004729 388 KRSNMAQ--AVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCS 437 (733)
Q Consensus 388 ~~~~l~~--~~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~ 437 (733)
++|.+.. .+..+++|+.|+++++ .+++.. .+..+++|+.|+++++.
T Consensus 114 ~~N~l~~~~~l~~l~~L~~L~Ls~N-~i~~~~---~l~~l~~L~~L~L~~N~ 161 (263)
T 1xeu_A 114 DNNELRDTDSLIHLKNLEILSIRNN-KLKSIV---MLGFLSKLEVLDLHGNE 161 (263)
T ss_dssp CSSCCSBSGGGTTCTTCCEEECTTS-CCCBCG---GGGGCTTCCEEECTTSC
T ss_pred cCCccCCChhhcCcccccEEECCCC-cCCCCh---HHccCCCCCEEECCCCc
Confidence 4443321 1334445555555442 233321 23344455555555443
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=98.66 E-value=4.3e-08 Score=92.50 Aligned_cols=94 Identities=15% Similarity=0.254 Sum_probs=62.1
Q ss_pred CccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCCCCCChhHHHHHHHhcccccccccccCCCCCcCCCCCCCccEEEe
Q 004729 401 LLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNISLESVRLPMLTVLQL 480 (733)
Q Consensus 401 ~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~~~l~~L~~L~L 480 (733)
+|+.|++++|. +++.++..+ ..|++|++|+|++|..++|.++..+... ++ .+++|++|+|
T Consensus 62 ~L~~LDLs~~~-Itd~GL~~L-~~~~~L~~L~L~~C~~ItD~gL~~L~~~-~~-----------------~~~~L~~L~L 121 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSIGFDHM-EGLQYVEKIRLCKCHYIEDGCLERLSQL-EN-----------------LQKSMLEMEI 121 (176)
T ss_dssp CEEEEEEESCC-CCGGGGGGG-TTCSCCCEEEEESCTTCCHHHHHHHHTC-HH-----------------HHHHCCEEEE
T ss_pred eEeEEeCcCCC-ccHHHHHHh-cCCCCCCEEEeCCCCccCHHHHHHHHhc-cc-----------------ccCCCCEEEc
Confidence 57777777775 777776554 5677888888888877888777777521 00 0124556666
Q ss_pred CCCCCCchHHHHHhhCCCCcCEEEEecCCCCccc
Q 004729 481 HSCEGITSASMAAISHSYMLEVLELDNCNLLTSV 514 (733)
Q Consensus 481 ~~c~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~ 514 (733)
++|..++|.++..++.+++|++|+|++|..+++.
T Consensus 122 s~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 122 ISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKEK 155 (176)
T ss_dssp ESCTTCCHHHHHHGGGCTTCCEEEEESCTTCCCH
T ss_pred CCCCcCCHHHHHHHhcCCCCCEEECCCCCCCCch
Confidence 6666677777777777777777777777666553
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=98.66 E-value=1.8e-08 Score=98.99 Aligned_cols=124 Identities=13% Similarity=0.099 Sum_probs=71.5
Q ss_pred CCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEEeeccccchhc----ccCCCCcEEEE
Q 004729 312 RNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVS----IRCPQLEHLSL 387 (733)
Q Consensus 312 ~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~i~----~~~~~L~~L~L 387 (733)
++|++|+++++.++......+..+++|++|++++|.+.......+..+++|++|++++|.+..++ ..+++|+.|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 107 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL 107 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence 45667777766666443444556677777777776666444444556667777777766654333 34556666666
Q ss_pred cCCchHHH----hhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCCC
Q 004729 388 KRSNMAQA----VLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCS 437 (733)
Q Consensus 388 ~~~~l~~~----~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~ 437 (733)
++|.+..+ +..+++|++|+++++ .+.... ...+..+++|+.|+++++.
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~-~~~~~~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 108 NTNQLQSLPDGVFDKLTQLKDLRLYQN-QLKSVP-DGVFDRLTSLQYIWLHDNP 159 (208)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCC-TTTTTTCTTCCEEECCSCC
T ss_pred CCCcCcccCHhHhccCCcCCEEECCCC-ccceeC-HHHhccCCCccEEEecCCC
Confidence 66554422 345666777777663 333211 1223456677777777664
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.65 E-value=7.4e-08 Score=103.57 Aligned_cols=51 Identities=25% Similarity=0.200 Sum_probs=31.0
Q ss_pred hhCCCCccEEEEecCCCCChHHHH---HHHhcCCCCcEEeccCCCCCChhHHHHHH
Q 004729 396 VLNCPLLHLLDIASCHKLSDAAIR---LAATSCPQLESLDMSNCSCVSDESLREIA 448 (733)
Q Consensus 396 ~~~~~~L~~L~L~~c~~l~~~~l~---~l~~~~~~L~~L~L~~~~~l~~~~l~~l~ 448 (733)
+..+++|++|+|++| .+++.+.. ..+..+++|+.|+|++|. +++.+...+.
T Consensus 207 L~~~~~L~~L~Ls~N-~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~-i~~~g~~~L~ 260 (372)
T 3un9_A 207 LDRNRQLQELNVAYN-GAGDTAALALARAAREHPSLELLHLYFNE-LSSEGRQVLR 260 (372)
T ss_dssp GGGCSCCCEEECCSS-CCCHHHHHHHHHHHHHCSSCCEEECTTSS-CCHHHHHHHH
T ss_pred HhcCCCcCeEECCCC-CCCHHHHHHHHHHHHhCCCCCEEeccCCC-CCHHHHHHHH
Confidence 445567777777774 46655433 333455677777777766 6666666554
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.65 E-value=1.9e-08 Score=106.42 Aligned_cols=85 Identities=22% Similarity=0.264 Sum_probs=60.5
Q ss_pred HHHHHhcCCCCcEEeecCCCCCChhhhhhhcCCCCCCCccEEEeecCCCCccccc----cCCCcc-EEeccccccccccc
Q 004729 574 LTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRF----CSTSLV-SLSLVGCRAITALE 648 (733)
Q Consensus 574 L~~l~~~~~~L~~L~Ls~C~~lt~~~~~~~~~~~~l~~L~~L~L~~c~~L~~~~~----~~~sL~-~L~L~~c~~L~~l~ 648 (733)
...+...|++|+.|+|++ +.++......| .+|++|+.|.|.+. ++.++. .+.+|+ .|.+.+ +++.+.
T Consensus 218 ~~~l~~~~~~L~~l~L~~-n~i~~I~~~aF---~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~ 289 (329)
T 3sb4_A 218 FKLIRDYMPNLVSLDISK-TNATTIPDFTF---AQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIE 289 (329)
T ss_dssp HHHHHHHCTTCCEEECTT-BCCCEECTTTT---TTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT--TCCEEC
T ss_pred HHHHHHhcCCCeEEECCC-CCcceecHhhh---hCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc--cceEEc
Confidence 344455688999999988 46766554555 57889999999774 666653 678888 888876 565554
Q ss_pred ----cccccccEEeccccccccc
Q 004729 649 ----LKCPILEKVCLDGCDHIES 667 (733)
Q Consensus 649 ----~~~p~L~~L~L~~c~~L~~ 667 (733)
.+|++|++|++.+ +.++.
T Consensus 290 ~~aF~~c~~L~~l~l~~-n~i~~ 311 (329)
T 3sb4_A 290 FGAFMGCDNLRYVLATG-DKITT 311 (329)
T ss_dssp TTTTTTCTTEEEEEECS-SCCCE
T ss_pred hhhhhCCccCCEEEeCC-CccCc
Confidence 3789999999866 34444
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=98.64 E-value=2.2e-08 Score=102.30 Aligned_cols=142 Identities=23% Similarity=0.306 Sum_probs=110.7
Q ss_pred hhCCCccEEEEcCCCchhHHHHHHhhcCCCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCcc
Q 004729 284 QRYPNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLR 363 (733)
Q Consensus 284 ~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~ 363 (733)
..+++++.|++.++. +... ..+..+++|++|+|++|.+++..+ +..+++|++|++++|.+.. ++.+.. ++|+
T Consensus 38 ~~l~~L~~L~l~~n~-i~~l--~~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~-l~~~~~--~~L~ 109 (263)
T 1xeu_A 38 KELSGVQNFNGDNSN-IQSL--AGMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKN-LNGIPS--ACLS 109 (263)
T ss_dssp HHHTTCSEEECTTSC-CCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSC-CTTCCC--SSCC
T ss_pred hhcCcCcEEECcCCC-cccc--hHHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCC-cCcccc--Cccc
Confidence 356789999999853 4332 257889999999999999986443 8899999999999998875 333332 9999
Q ss_pred EEEeeccccchhc--ccCCCCcEEEEcCCchHH--HhhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCCC
Q 004729 364 RLEITKCRVMRVS--IRCPQLEHLSLKRSNMAQ--AVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCS 437 (733)
Q Consensus 364 ~L~L~~~~~~~i~--~~~~~L~~L~L~~~~l~~--~~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~ 437 (733)
+|++++|.+..+. ..+++|+.|++++|.+.. .+..+++|++|+++++ .+.+. ..+..+++|+.|+++++.
T Consensus 110 ~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~~~l~~l~~L~~L~L~~N-~i~~~---~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 110 RLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGN-EITNT---GGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp EEECCSSCCSBSGGGTTCTTCCEEECTTSCCCBCGGGGGCTTCCEEECTTS-CCCBC---TTSTTCCCCCEEEEEEEE
T ss_pred EEEccCCccCCChhhcCcccccEEECCCCcCCCChHHccCCCCCEEECCCC-cCcch---HHhccCCCCCEEeCCCCc
Confidence 9999999876553 578999999999987654 4678999999999995 56554 345567788888887765
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=98.64 E-value=3.1e-08 Score=93.49 Aligned_cols=103 Identities=13% Similarity=0.172 Sum_probs=66.0
Q ss_pred CCCEEEecCccCChHHHHhccCCCCCcEEEEecCc-CCcccccccccCCCccEEEeeccccchhcccCCCCcEEEEcCCc
Q 004729 313 NLEALTLGRGQLGDAFFHALADCSMLKSLNVNDAT-LGNGVQEIPINHDQLRRLEITKCRVMRVSIRCPQLEHLSLKRSN 391 (733)
Q Consensus 313 ~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~-l~~~~~~~~~~~~~L~~L~L~~~~~~~i~~~~~~L~~L~L~~~~ 391 (733)
+|++|+++++.+++..+..+..|++|++|+|++|. ++ +.+
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~It---------------------------------------D~g 102 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIE---------------------------------------DGC 102 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCC---------------------------------------HHH
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccC---------------------------------------HHH
Confidence 46666666666666666655556666666665553 22 223
Q ss_pred hHHHhh---CCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCCCCCChhHH--HHHHHhccccc
Q 004729 392 MAQAVL---NCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESL--REIALSCANLR 455 (733)
Q Consensus 392 l~~~~~---~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~l--~~l~~~~~~L~ 455 (733)
+..+.. .+++|++|+|++|..+++.++..+ ..|++|++|++++|..+++.++ ..+-..+|+++
T Consensus 103 L~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L-~~~~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~ 170 (176)
T 3e4g_A 103 LERLSQLENLQKSMLEMEIISCGNVTDKGIIAL-HHFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLE 170 (176)
T ss_dssp HHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHG-GGCTTCCEEEEESCTTCCCHHHHHHHHHHHCTTCE
T ss_pred HHHHHhcccccCCCCEEEcCCCCcCCHHHHHHH-hcCCCCCEEECCCCCCCCchHHHHHHHHHHCCCcE
Confidence 333332 145788888888888888888765 4688888888888888888653 34444556554
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=98.62 E-value=1.7e-08 Score=95.46 Aligned_cols=123 Identities=20% Similarity=0.249 Sum_probs=65.0
Q ss_pred CCCCEEEecCccCC-hHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEEeeccccch-hc---ccCCCCcEEE
Q 004729 312 RNLEALTLGRGQLG-DAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMR-VS---IRCPQLEHLS 386 (733)
Q Consensus 312 ~~L~~L~Ls~~~i~-~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~-i~---~~~~~L~~L~ 386 (733)
++|++|++++|.+. ..++..+..+++|++|++++|.+... .....+++|++|++++|.+.. ++ ..+++|+.|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 44555555555544 22333334455555555555554433 333445555555555555433 11 2355555555
Q ss_pred EcCCchH-----HHhhCCCCccEEEEecCCCCChHHH--HHHHhcCCCCcEEeccCCC
Q 004729 387 LKRSNMA-----QAVLNCPLLHLLDIASCHKLSDAAI--RLAATSCPQLESLDMSNCS 437 (733)
Q Consensus 387 L~~~~l~-----~~~~~~~~L~~L~L~~c~~l~~~~l--~~l~~~~~~L~~L~L~~~~ 437 (733)
+++|.+. ..+..+++|++|+++++ .+..... ...+..+++|+.|+++++.
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCC
Confidence 5555433 23456777777777775 3333221 2356678888888887765
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.61 E-value=7.8e-08 Score=103.38 Aligned_cols=174 Identities=16% Similarity=0.175 Sum_probs=91.3
Q ss_pred CCccEEEEcCCCchhHHHHHHhh-----cCCCCCEEEecCccCChHHHHhcc-CCCCCcEEEEecCcCCcccccccccCC
Q 004729 287 PNATEVNIYGAPAIHLLVMKAVS-----LLRNLEALTLGRGQLGDAFFHALA-DCSMLKSLNVNDATLGNGVQEIPINHD 360 (733)
Q Consensus 287 ~~L~~L~L~~~~~~~~~~~~~l~-----~l~~L~~L~Ls~~~i~~~~~~~L~-~~~~L~~L~L~~~~l~~~~~~~~~~~~ 360 (733)
+.++.|+++++. +.......+. ..++|++|+|++|.+++.....+. .+++|++|+|++|.+++........
T Consensus 72 ~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~-- 148 (372)
T 3un9_A 72 SSLRQLNLAGVR-MTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRD-- 148 (372)
T ss_dssp TTCCEEECTTSC-CCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHH--
T ss_pred hhCCEEEecCCC-CCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHH--
Confidence 456666666643 3332222222 225666666666666655444443 2345566666665544321111100
Q ss_pred CccEEEeeccccchhcccCCCCcEEEEcCCchH--------HHhhCCCCccEEEEecCCCCChHHHH---HHHhcCCCCc
Q 004729 361 QLRRLEITKCRVMRVSIRCPQLEHLSLKRSNMA--------QAVLNCPLLHLLDIASCHKLSDAAIR---LAATSCPQLE 429 (733)
Q Consensus 361 ~L~~L~L~~~~~~~i~~~~~~L~~L~L~~~~l~--------~~~~~~~~L~~L~L~~c~~l~~~~l~---~l~~~~~~L~ 429 (733)
.+....++|+.|+|++|.+. ..+..+++|++|+|++| .+.+.+.. ..+..+++|+
T Consensus 149 -------------~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N-~l~~~g~~~L~~~L~~~~~L~ 214 (372)
T 3un9_A 149 -------------LLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHT-GLGDEGLELLAAQLDRNRQLQ 214 (372)
T ss_dssp -------------HHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTS-SCHHHHHHHHHHHGGGCSCCC
T ss_pred -------------HHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCC-CCCcHHHHHHHHHHhcCCCcC
Confidence 00012334444444444332 22356677777777774 46665533 3345566788
Q ss_pred EEeccCCCCCChhHHHHHHHhcccccccccccCCCCCcCCCCCCCccEEEeCCCCCCchHHHHHhhCC
Q 004729 430 SLDMSNCSCVSDESLREIALSCANLRILNSSYCPNISLESVRLPMLTVLQLHSCEGITSASMAAISHS 497 (733)
Q Consensus 430 ~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~~~l~~L~~L~L~~c~~l~~~~~~~l~~~ 497 (733)
.|++++|. +++.+...+...+. ..++|++|+|++ +.+++.+...+...
T Consensus 215 ~L~Ls~N~-i~~~g~~~l~~~L~------------------~~~~L~~L~Ls~-N~i~~~g~~~L~~~ 262 (372)
T 3un9_A 215 ELNVAYNG-AGDTAALALARAAR------------------EHPSLELLHLYF-NELSSEGRQVLRDL 262 (372)
T ss_dssp EEECCSSC-CCHHHHHHHHHHHH------------------HCSSCCEEECTT-SSCCHHHHHHHHHC
T ss_pred eEECCCCC-CCHHHHHHHHHHHH------------------hCCCCCEEeccC-CCCCHHHHHHHHHH
Confidence 88887776 77766655543221 234577777777 45787777777653
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=98.61 E-value=9.7e-08 Score=93.62 Aligned_cols=37 Identities=19% Similarity=0.118 Sum_probs=23.2
Q ss_pred CCCccEEEeCCCCCCchHHHHHhhCCCCcCEEEEecCC
Q 004729 472 LPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCN 509 (733)
Q Consensus 472 l~~L~~L~L~~c~~l~~~~~~~l~~~~~L~~L~L~~~~ 509 (733)
.++|++|+++++ .++......+..+++|++|++++|.
T Consensus 27 ~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~ 63 (208)
T 2o6s_A 27 PAQTTYLDLETN-SLKSLPNGVFDELTSLTQLYLGGNK 63 (208)
T ss_dssp CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSC
T ss_pred CCCCcEEEcCCC-ccCcCChhhhcccccCcEEECCCCc
Confidence 456777777773 4554444445667777777777663
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=98.60 E-value=1.8e-08 Score=93.13 Aligned_cols=130 Identities=18% Similarity=0.201 Sum_probs=90.4
Q ss_pred CCCccEEEEcCCCchh-HHHHHHhhcCCCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccE
Q 004729 286 YPNATEVNIYGAPAIH-LLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRR 364 (733)
Q Consensus 286 ~~~L~~L~L~~~~~~~-~~~~~~l~~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~ 364 (733)
.++++.|+++++. +. ...+..+..+++|++|++++|.+... ..+..+++|++|++++|.+...++.....+++|++
T Consensus 16 ~~~l~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 16 PSDVKELVLDNSR-SNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp GGGCSEEECTTCB-CBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred CccCeEEEccCCc-CChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 3578999999864 33 23334567889999999999998865 77888999999999999988767777767888888
Q ss_pred EEeeccccchhcccCCCCcEEEEcCCchHHHhhCCCCccEEEEecCCCCChHHH--HHHHhcCCCCcEEecc
Q 004729 365 LEITKCRVMRVSIRCPQLEHLSLKRSNMAQAVLNCPLLHLLDIASCHKLSDAAI--RLAATSCPQLESLDMS 434 (733)
Q Consensus 365 L~L~~~~~~~i~~~~~~L~~L~L~~~~l~~~~~~~~~L~~L~L~~c~~l~~~~l--~~l~~~~~~L~~L~L~ 434 (733)
|++++|.+..++ ....+..+++|++|+++++ .+..... ...+..+++|+.|+++
T Consensus 93 L~ls~N~i~~~~---------------~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 93 LNLSGNKIKDLS---------------TIEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EECTTSCCCSHH---------------HHGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred EECCCCcCCChH---------------HHHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCC
Confidence 888888654321 1123445566666666664 2332211 1345667777777765
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=98.59 E-value=4.3e-08 Score=97.91 Aligned_cols=124 Identities=16% Similarity=0.095 Sum_probs=77.5
Q ss_pred CCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEEeeccccchhc----ccCCCCcEEEE
Q 004729 312 RNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVS----IRCPQLEHLSL 387 (733)
Q Consensus 312 ~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~i~----~~~~~L~~L~L 387 (733)
++|++|+|++|.+....+..+..+++|++|+|++|.+.......+..+++|+.|++++|.+..++ ..+++|+.|+|
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 119 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM 119 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence 56777777777777555566667777777777777765544455566777777777777665443 34566666666
Q ss_pred cCCchHHH---hhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCCC
Q 004729 388 KRSNMAQA---VLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCS 437 (733)
Q Consensus 388 ~~~~l~~~---~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~ 437 (733)
++|.+..+ +..+++|++|+++++ .+.... ...+..+++|+.|++.++.
T Consensus 120 s~N~l~~lp~~~~~l~~L~~L~L~~N-~l~~~~-~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 120 CCNKLTELPRGIERLTHLTHLALDQN-QLKSIP-HGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp CSSCCCSCCTTGGGCTTCSEEECCSS-CCCCCC-TTTTTTCTTCCEEECTTSC
T ss_pred cCCcccccCcccccCCCCCEEECCCC-cCCccC-HHHHhCCCCCCEEEeeCCC
Confidence 66655422 345666777777663 343221 1234456677777776655
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=98.59 E-value=3e-08 Score=93.73 Aligned_cols=128 Identities=18% Similarity=0.242 Sum_probs=86.7
Q ss_pred CCCCCcEEEEecCcCC-cccccccccCCCccEEEeeccccchh--cccCCCCcEEEEcCCchH----HHhhCCCCccEEE
Q 004729 334 DCSMLKSLNVNDATLG-NGVQEIPINHDQLRRLEITKCRVMRV--SIRCPQLEHLSLKRSNMA----QAVLNCPLLHLLD 406 (733)
Q Consensus 334 ~~~~L~~L~L~~~~l~-~~~~~~~~~~~~L~~L~L~~~~~~~i--~~~~~~L~~L~L~~~~l~----~~~~~~~~L~~L~ 406 (733)
..++|++|++++|.+. ..++.....+++|+.|++++|.+..+ ...+++|+.|++++|.+. ..+..+++|++|+
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 4589999999999987 45666677899999999999987644 345677888888877554 3345577788888
Q ss_pred EecCCCCChHHHHHHHhcCCCCcEEeccCCCCCChhHH--HHHHHhcccccccccccCC
Q 004729 407 IASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESL--REIALSCANLRILNSSYCP 463 (733)
Q Consensus 407 L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~l--~~l~~~~~~L~~L~L~~~~ 463 (733)
++++ .+........+..+++|+.|+++++. ++.... ...+..+++|+.|++.+|.
T Consensus 102 Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 102 LSGN-KLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp CBSS-SCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred ccCC-ccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCC
Confidence 8775 45543222345567777777777765 332211 1234466777777776655
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.57 E-value=4.1e-08 Score=105.28 Aligned_cols=124 Identities=19% Similarity=0.164 Sum_probs=71.3
Q ss_pred CCCCEEEecCccCChHHHHhcc-CCCCCcEEEEecCcCCcccccccccCCCccEEEeeccccchhc----ccCCCCcEEE
Q 004729 312 RNLEALTLGRGQLGDAFFHALA-DCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVS----IRCPQLEHLS 386 (733)
Q Consensus 312 ~~L~~L~Ls~~~i~~~~~~~L~-~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~i~----~~~~~L~~L~ 386 (733)
+.++.|+|++|.++......+. .+++|++|+|++|.+....+..+..+++|++|+|++|.+..+. ..+++|+.|+
T Consensus 39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 118 (361)
T 2xot_A 39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLL 118 (361)
T ss_dssp TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEE
Confidence 3466677777666654444444 6677777777776666544445556667777777776655432 3456666666
Q ss_pred EcCCchHH----HhhCCCCccEEEEecCCCCChHHHHHHH---hcCCCCcEEeccCCC
Q 004729 387 LKRSNMAQ----AVLNCPLLHLLDIASCHKLSDAAIRLAA---TSCPQLESLDMSNCS 437 (733)
Q Consensus 387 L~~~~l~~----~~~~~~~L~~L~L~~c~~l~~~~l~~l~---~~~~~L~~L~L~~~~ 437 (733)
|++|.+.. .+..+++|++|+|+++ .+..... ..+ ..+++|+.|+|+++.
T Consensus 119 L~~N~i~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~-~~~~~~~~l~~L~~L~L~~N~ 174 (361)
T 2xot_A 119 LYNNHIVVVDRNAFEDMAQLQKLYLSQN-QISRFPV-ELIKDGNKLPKLMLLDLSSNK 174 (361)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSS-CCCSCCG-GGTC----CTTCCEEECCSSC
T ss_pred CCCCcccEECHHHhCCcccCCEEECCCC-cCCeeCH-HHhcCcccCCcCCEEECCCCC
Confidence 66665542 2455666777777663 3433211 111 345677777777665
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=98.57 E-value=3.6e-08 Score=97.80 Aligned_cols=124 Identities=12% Similarity=0.153 Sum_probs=79.6
Q ss_pred CCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEEeeccccchhc----ccCCCCcEEEE
Q 004729 312 RNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVS----IRCPQLEHLSL 387 (733)
Q Consensus 312 ~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~i~----~~~~~L~~L~L 387 (733)
++|++|++++|.+.......+..+++|++|+|++|.+....+..+..+++|++|+|++|.+..++ ..+++|+.|+|
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 111 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL 111 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence 45667777776666444445566677777777777666554555566677777777777665443 34567777777
Q ss_pred cCCchHH----HhhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCCC
Q 004729 388 KRSNMAQ----AVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCS 437 (733)
Q Consensus 388 ~~~~l~~----~~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~ 437 (733)
++|.+.. .+..+++|++|+++++ .+.... ...+..+++|+.|+++++.
T Consensus 112 ~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~-~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 112 NANKINCLRVDAFQDLHNLNLLSLYDN-KLQTIA-KGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCC-TTTTTTCTTCCEEECCSSC
T ss_pred CCCCCCEeCHHHcCCCCCCCEEECCCC-cCCEEC-HHHHhCCCCCCEEEeCCCC
Confidence 7766543 3556778888888874 344322 1234567888999998876
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=98.56 E-value=4.5e-08 Score=97.13 Aligned_cols=121 Identities=16% Similarity=0.150 Sum_probs=54.9
Q ss_pred CccEEEEcCCCchhHHHHHHhhcCCCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEEe
Q 004729 288 NATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEI 367 (733)
Q Consensus 288 ~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L 367 (733)
+++.|++.+ ..+.......+..+++|++|+|++|.+....+..+..+++|++|+|++|.+.......+..+++|++|++
T Consensus 33 ~l~~L~l~~-n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 111 (220)
T 2v9t_B 33 TITEIRLEQ-NTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL 111 (220)
T ss_dssp TCCEEECCS-SCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEECCC-CcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence 445555544 2222222223344455555555555554433444444555555555555544333333344555555555
Q ss_pred eccccchhc----ccCCCCcEEEEcCCchHHH----hhCCCCccEEEEec
Q 004729 368 TKCRVMRVS----IRCPQLEHLSLKRSNMAQA----VLNCPLLHLLDIAS 409 (733)
Q Consensus 368 ~~~~~~~i~----~~~~~L~~L~L~~~~l~~~----~~~~~~L~~L~L~~ 409 (733)
++|.+..+. ..+++|+.|+|++|.+..+ +..+++|++|++++
T Consensus 112 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 161 (220)
T 2v9t_B 112 NANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQ 161 (220)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred CCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCC
Confidence 555443321 2344555555555444321 33344555555544
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.56 E-value=9.1e-08 Score=103.87 Aligned_cols=73 Identities=29% Similarity=0.319 Sum_probs=39.0
Q ss_pred cCCCCcEEeecCCCCCChhhhhhhcCCCCCCCccEEEeecCCCCccccc----cCCCccEEeccccccccccc----ccc
Q 004729 580 QCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRF----CSTSLVSLSLVGCRAITALE----LKC 651 (733)
Q Consensus 580 ~~~~L~~L~Ls~C~~lt~~~~~~~~~~~~l~~L~~L~L~~c~~L~~~~~----~~~sL~~L~L~~c~~L~~l~----~~~ 651 (733)
.|.+|+.+.+.+ .++......| .+|.+|+.+.|.. .++.++. .|.+|+.+.+.. +++.+. .+|
T Consensus 295 ~~~~L~~i~l~~--~i~~I~~~aF---~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C 365 (394)
T 4fs7_A 295 GCSSLTEVKLLD--SVKFIGEEAF---ESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPL--SLRKIGANAFQGC 365 (394)
T ss_dssp TCTTCCEEEECT--TCCEECTTTT---TTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCT--TCCEECTTTBTTC
T ss_pred cccccccccccc--ccceechhhh---cCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECc--cccEehHHHhhCC
Confidence 456666666653 2333222233 4566666666643 2444432 456666666643 244433 367
Q ss_pred ccccEEeccc
Q 004729 652 PILEKVCLDG 661 (733)
Q Consensus 652 p~L~~L~L~~ 661 (733)
++|+++++..
T Consensus 366 ~~L~~i~lp~ 375 (394)
T 4fs7_A 366 INLKKVELPK 375 (394)
T ss_dssp TTCCEEEEEG
T ss_pred CCCCEEEECC
Confidence 7777777754
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=98.55 E-value=5e-08 Score=97.43 Aligned_cols=123 Identities=20% Similarity=0.163 Sum_probs=102.3
Q ss_pred CCccEEEEcCCCchhHHHHHHhhcCCCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEE
Q 004729 287 PNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLE 366 (733)
Q Consensus 287 ~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~ 366 (733)
++++.|++++ ..+.......+..+++|++|+|++|.++......+..+++|++|+|++|.+.......+..+++|++|+
T Consensus 40 ~~L~~L~Ls~-n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~ 118 (229)
T 3e6j_A 40 TNAQILYLHD-NQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELF 118 (229)
T ss_dssp TTCSEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCEEEcCC-CccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEe
Confidence 6799999998 445555456678899999999999999755555678899999999999998876666677899999999
Q ss_pred eeccccchhc---ccCCCCcEEEEcCCchHHH----hhCCCCccEEEEecC
Q 004729 367 ITKCRVMRVS---IRCPQLEHLSLKRSNMAQA----VLNCPLLHLLDIASC 410 (733)
Q Consensus 367 L~~~~~~~i~---~~~~~L~~L~L~~~~l~~~----~~~~~~L~~L~L~~c 410 (733)
+++|.+..++ ..+++|+.|+|++|.+..+ +..+++|+.|++.+.
T Consensus 119 Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 169 (229)
T 3e6j_A 119 MCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169 (229)
T ss_dssp CCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred ccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCC
Confidence 9999987665 4689999999999877643 567899999999984
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=1.1e-10 Score=132.72 Aligned_cols=37 Identities=16% Similarity=0.179 Sum_probs=25.4
Q ss_pred hcCCCCCEEEecCccCChHHHHhccCCCCCcEEEEecC
Q 004729 309 SLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDA 346 (733)
Q Consensus 309 ~~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~ 346 (733)
..+++|+.|+|+.|.++ .++..++.|++|+.|+++++
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n 382 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENK 382 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccc
Confidence 34667777777777765 56777777777777776544
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.48 E-value=5.6e-08 Score=104.21 Aligned_cols=148 Identities=20% Similarity=0.204 Sum_probs=114.4
Q ss_pred CCccEEEEcCCCchhHHHHHHhh-cCCCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEE
Q 004729 287 PNATEVNIYGAPAIHLLVMKAVS-LLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRL 365 (733)
Q Consensus 287 ~~L~~L~L~~~~~~~~~~~~~l~-~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L 365 (733)
..++.|++++ +.+.......+. .+++|++|+|++|.+....+..+..+++|++|+|++|.+.......+..+++|+.|
T Consensus 39 ~~l~~L~Ls~-N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 117 (361)
T 2xot_A 39 SYTALLDLSH-NNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVL 117 (361)
T ss_dssp TTCSEEECCS-SCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCEEECCC-CCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEE
Confidence 3578899988 445544444455 88999999999999987666678899999999999999887666677889999999
Q ss_pred Eeeccccchh----cccCCCCcEEEEcCCchHHH----h---hCCCCccEEEEecCCCCChHHHHHHHhcCCC--CcEEe
Q 004729 366 EITKCRVMRV----SIRCPQLEHLSLKRSNMAQA----V---LNCPLLHLLDIASCHKLSDAAIRLAATSCPQ--LESLD 432 (733)
Q Consensus 366 ~L~~~~~~~i----~~~~~~L~~L~L~~~~l~~~----~---~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~--L~~L~ 432 (733)
+|++|.+..+ ...+++|+.|+|++|.+..+ + ..+++|+.|+|+++ .+...... .+..++. |+.|+
T Consensus 118 ~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~-~~~~l~~~~l~~l~ 195 (361)
T 2xot_A 118 LLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSN-KLKKLPLT-DLQKLPAWVKNGLY 195 (361)
T ss_dssp ECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSS-CCCCCCHH-HHHHSCHHHHTTEE
T ss_pred ECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCC-CCCccCHH-HhhhccHhhcceEE
Confidence 9999998755 35689999999999877643 2 46899999999994 56654322 3345565 47899
Q ss_pred ccCCC
Q 004729 433 MSNCS 437 (733)
Q Consensus 433 L~~~~ 437 (733)
+.+++
T Consensus 196 l~~N~ 200 (361)
T 2xot_A 196 LHNNP 200 (361)
T ss_dssp CCSSC
T ss_pred ecCCC
Confidence 99877
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.44 E-value=1.4e-07 Score=93.59 Aligned_cols=123 Identities=13% Similarity=0.143 Sum_probs=66.8
Q ss_pred CCCEEEecCccCChHHH-HhccCCCCCcEEEEecCcCCcccccccccCCCccEEEeeccccchhc----ccCCCCcEEEE
Q 004729 313 NLEALTLGRGQLGDAFF-HALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVS----IRCPQLEHLSL 387 (733)
Q Consensus 313 ~L~~L~Ls~~~i~~~~~-~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~i~----~~~~~L~~L~L 387 (733)
.+++|+|++|.++...+ ..+..+++|++|+|++|.+....+..+..+++|++|++++|.+..+. ..+++|+.|+|
T Consensus 33 ~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 112 (220)
T 2v70_A 33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLML 112 (220)
T ss_dssp TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEEC
T ss_pred CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEEC
Confidence 34555555555543211 22345555555555555555443334445555555555555544332 24555666666
Q ss_pred cCCchHHH----hhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCCC
Q 004729 388 KRSNMAQA----VLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCS 437 (733)
Q Consensus 388 ~~~~l~~~----~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~ 437 (733)
++|.+..+ +..+++|++|+++++ .+.... +..+..+++|+.|+++++.
T Consensus 113 s~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~-~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 113 RSNRITCVGNDSFIGLSSVRLLSLYDN-QITTVA-PGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp TTSCCCCBCTTSSTTCTTCSEEECTTS-CCCCBC-TTTTTTCTTCCEEECCSCC
T ss_pred CCCcCCeECHhHcCCCccCCEEECCCC-cCCEEC-HHHhcCCCCCCEEEecCcC
Confidence 65554432 455677777777773 344321 2334567788888888776
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=98.42 E-value=1.8e-07 Score=89.16 Aligned_cols=122 Identities=16% Similarity=0.189 Sum_probs=62.3
Q ss_pred CCCCCEEEecCccCChHHHHhccCC-CCCcEEEEecCcCCcccccccccCCCccEEEeeccccchhc----ccCCCCcEE
Q 004729 311 LRNLEALTLGRGQLGDAFFHALADC-SMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVS----IRCPQLEHL 385 (733)
Q Consensus 311 l~~L~~L~Ls~~~i~~~~~~~L~~~-~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~i~----~~~~~L~~L 385 (733)
+++|++|++++|.++. + ..+..+ ++|++|++++|.+... .....+++|+.|++++|.+..++ ..+++|+.|
T Consensus 18 ~~~L~~L~l~~n~l~~-i-~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 93 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPV-I-ENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL 93 (176)
T ss_dssp TTSCEEEECTTSCCCS-C-CCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred cCCceEEEeeCCCCch-h-HHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence 3445555555554442 1 112222 2555555555544432 22334455555555555544332 234555555
Q ss_pred EEcCCchH---H--HhhCCCCccEEEEecCCCCChHH--HHHHHhcCCCCcEEeccCCC
Q 004729 386 SLKRSNMA---Q--AVLNCPLLHLLDIASCHKLSDAA--IRLAATSCPQLESLDMSNCS 437 (733)
Q Consensus 386 ~L~~~~l~---~--~~~~~~~L~~L~L~~c~~l~~~~--l~~l~~~~~~L~~L~L~~~~ 437 (733)
++++|.+. . .+..+++|+.|+++++. +.... -..++..+++|+.|+++.+.
T Consensus 94 ~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 94 ILTNNSLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp ECCSCCCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred ECCCCcCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 55555432 1 34567777777777743 32211 11246678888888888765
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=98.40 E-value=1.4e-08 Score=98.96 Aligned_cols=109 Identities=17% Similarity=0.214 Sum_probs=61.7
Q ss_pred HhhcCCCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEEeeccccchhcccCCCCcEEE
Q 004729 307 AVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIRCPQLEHLS 386 (733)
Q Consensus 307 ~l~~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~i~~~~~~L~~L~ 386 (733)
.+..+++|++|++++|.+.. ++ .+..+++|++|++++|.+. .++.....+++|++|++++|.+..++
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~l~---------- 109 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASLS---------- 109 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCCHH----------
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCcCC----------
Confidence 55666777777777766654 22 4555667777777766655 23333344456666666665433221
Q ss_pred EcCCchHHHhhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCCC
Q 004729 387 LKRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCS 437 (733)
Q Consensus 387 L~~~~l~~~~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~ 437 (733)
.+..+++|++|+++++ .+........+..+++|+.|+++++.
T Consensus 110 --------~~~~l~~L~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~ 151 (198)
T 1ds9_A 110 --------GIEKLVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp --------HHHHHHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSCH
T ss_pred --------ccccCCCCCEEECCCC-cCCchhHHHHHhcCCCCCEEEecCCc
Confidence 2445566666666663 34443322344566777777776665
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.39 E-value=5.8e-07 Score=95.89 Aligned_cols=63 Identities=24% Similarity=0.173 Sum_probs=44.1
Q ss_pred HHHHHHhcccccccccccCCCCCcCCCCCCCccEEEeCCCCCCchHHHHHhh--CCCCcCEEEEec
Q 004729 444 LREIALSCANLRILNSSYCPNISLESVRLPMLTVLQLHSCEGITSASMAAIS--HSYMLEVLELDN 507 (733)
Q Consensus 444 l~~l~~~~~~L~~L~L~~~~~l~~~~~~l~~L~~L~L~~c~~l~~~~~~~l~--~~~~L~~L~L~~ 507 (733)
+..+...+|+|++|.+.++..+......+++|++|.+..| .+++..+..++ .+++|++|+|+.
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l~l~~~~~~~L~~L~L~~~-~l~~~~l~~l~~~~lp~L~~L~L~~ 228 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISG-GLPDSVVEDILGSDLPNLEKLVLYV 228 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTCBCCSCBCTTCSEEEEECS-BCCHHHHHHHHHSBCTTCCEEEEEC
T ss_pred HHHHHhcCCCCcEEEEeCCCCceeccccCCCCcEEEEecC-CCChHHHHHHHHccCCCCcEEEEec
Confidence 4445556677777777665433333345789999999875 47777777776 689999999864
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=98.33 E-value=3.2e-07 Score=87.41 Aligned_cols=95 Identities=16% Similarity=0.259 Sum_probs=44.8
Q ss_pred CCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEEeeccccchhc-----ccCCCCcEEEE
Q 004729 313 NLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVS-----IRCPQLEHLSL 387 (733)
Q Consensus 313 ~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~i~-----~~~~~L~~L~L 387 (733)
+|++|++++|.++.. ..+..+++|++|++++|.+....+.+...+++|++|++++|.+..++ ..+++|+.|++
T Consensus 43 ~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l 120 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCI 120 (176)
T ss_dssp CCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEEC
T ss_pred CCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEe
Confidence 555555555555432 33444555555555555544332233344555555555555443222 23455555555
Q ss_pred cCCchHH-------HhhCCCCccEEEEec
Q 004729 388 KRSNMAQ-------AVLNCPLLHLLDIAS 409 (733)
Q Consensus 388 ~~~~l~~-------~~~~~~~L~~L~L~~ 409 (733)
++|.+.. .+..+|+|+.|+++.
T Consensus 121 ~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~ 149 (176)
T 1a9n_A 121 LRNPVTNKKHYRLYVIYKVPQVRVLDFQK 149 (176)
T ss_dssp CSSGGGGSTTHHHHHHHHCTTCSEETTEE
T ss_pred cCCCCCCcHhHHHHHHHHCCccceeCCCc
Confidence 5544331 234455555555554
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.30 E-value=2e-07 Score=92.36 Aligned_cols=123 Identities=16% Similarity=0.184 Sum_probs=99.3
Q ss_pred CCccEEEEcCCCchhHHH-HHHhhcCCCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEE
Q 004729 287 PNATEVNIYGAPAIHLLV-MKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRL 365 (733)
Q Consensus 287 ~~L~~L~L~~~~~~~~~~-~~~l~~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L 365 (733)
..++.|++++. .+.... ...+..+++|++|+|++|.++......+..+++|++|+|++|.+....+..+..+++|++|
T Consensus 32 ~~~~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 110 (220)
T 2v70_A 32 QYTAELRLNNN-EFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTL 110 (220)
T ss_dssp TTCSEEECCSS-CCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEE
T ss_pred CCCCEEEcCCC-cCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEE
Confidence 35688888873 343331 2336789999999999999986666678899999999999999987777777889999999
Q ss_pred Eeeccccchhc----ccCCCCcEEEEcCCchHH----HhhCCCCccEEEEecC
Q 004729 366 EITKCRVMRVS----IRCPQLEHLSLKRSNMAQ----AVLNCPLLHLLDIASC 410 (733)
Q Consensus 366 ~L~~~~~~~i~----~~~~~L~~L~L~~~~l~~----~~~~~~~L~~L~L~~c 410 (733)
++++|.+..+. ..+++|+.|+|++|.+.. .+..+++|++|++++.
T Consensus 111 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 163 (220)
T 2v70_A 111 MLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163 (220)
T ss_dssp ECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred ECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCc
Confidence 99999887553 467899999999987754 3667899999999984
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.29 E-value=3.9e-06 Score=89.49 Aligned_cols=88 Identities=16% Similarity=0.263 Sum_probs=48.3
Q ss_pred CCCCccEEEEecCCCCChHHHHHHHh--cCCCCcEEeccCCCCCChhHHHHHHHhcccccccccccCCCCCcCCCCCCCc
Q 004729 398 NCPLLHLLDIASCHKLSDAAIRLAAT--SCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNISLESVRLPML 475 (733)
Q Consensus 398 ~~~~L~~L~L~~c~~l~~~~l~~l~~--~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~~~l~~L 475 (733)
.+|+|++|.+.+|. +.+.....++. .+++|+.|+|+.+. +++.+...+...++ .+++|
T Consensus 250 ~~p~Lr~L~L~~~~-i~~~~~~~la~a~~~~~L~~LdLs~n~-L~d~G~~~L~~~L~------------------~l~~L 309 (362)
T 2ra8_A 250 RFPNLKWLGIVDAE-EQNVVVEMFLESDILPQLETMDISAGV-LTDEGARLLLDHVD------------------KIKHL 309 (362)
T ss_dssp TCTTCCEEEEESCT-THHHHHHHHHHCSSGGGCSEEECCSSC-CBHHHHHHHHTTHH------------------HHTTC
T ss_pred CCCCcCEEeCCCCC-CchHHHHHHHhCccCCCCCEEECCCCC-CChHHHHHHHhhcc------------------cCCcc
Confidence 46777777777653 44433333332 35677777776654 66666555431111 23456
Q ss_pred cEEEeCCCCCCchHHHHHhhC-CCCcCEEEEecC
Q 004729 476 TVLQLHSCEGITSASMAAISH-SYMLEVLELDNC 508 (733)
Q Consensus 476 ~~L~L~~c~~l~~~~~~~l~~-~~~L~~L~L~~~ 508 (733)
+.|+++.| .+++.....+.. + ...++++..
T Consensus 310 ~~L~L~~n-~i~d~~~~~l~~al--g~~~~~~~~ 340 (362)
T 2ra8_A 310 KFINMKYN-YLSDEMKKELQKSL--PMKIDVSDS 340 (362)
T ss_dssp SEEECCSB-BCCHHHHHHHHHHC--CSEEECCSB
T ss_pred eEEECCCC-cCCHHHHHHHHHHc--CCEEEecCC
Confidence 66666664 477777666664 3 344566554
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.23 E-value=7.1e-06 Score=88.81 Aligned_cols=30 Identities=20% Similarity=0.338 Sum_probs=15.0
Q ss_pred cCCCccEEeccccccccccc----cccccccEEecc
Q 004729 629 CSTSLVSLSLVGCRAITALE----LKCPILEKVCLD 660 (733)
Q Consensus 629 ~~~sL~~L~L~~c~~L~~l~----~~~p~L~~L~L~ 660 (733)
.+.+|+.+.+.. +++.+. .+|.+|++++|.
T Consensus 295 ~~~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp 328 (394)
T 4fs7_A 295 GCSSLTEVKLLD--SVKFIGEEAFESCTSLVSIDLP 328 (394)
T ss_dssp TCTTCCEEEECT--TCCEECTTTTTTCTTCCEECCC
T ss_pred cccccccccccc--ccceechhhhcCCCCCCEEEeC
Confidence 455566655542 233332 245666666654
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=98.20 E-value=1.2e-07 Score=92.34 Aligned_cols=107 Identities=17% Similarity=0.182 Sum_probs=74.2
Q ss_pred HHHHhhCCCccEEEEcCCCchhHHHHHHhhcCCCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccC
Q 004729 280 EDVCQRYPNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINH 359 (733)
Q Consensus 280 ~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~ 359 (733)
...+..+++++.|+++++ .+... . .+..+++|+.|++++|.+. .++..+..+++|++|++++|.+.. ++ ....+
T Consensus 41 ~~~~~~l~~L~~L~ls~n-~l~~l-~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l 114 (198)
T 1ds9_A 41 DATLSTLKACKHLALSTN-NIEKI-S-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKL 114 (198)
T ss_dssp HHHHHHTTTCSEEECSEE-EESCC-C-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHH
T ss_pred hHHHhcCCCCCEEECCCC-CCccc-c-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccC
Confidence 335667899999999874 34332 2 6678899999999999887 344445567899999999998875 33 34567
Q ss_pred CCccEEEeeccccchhc-----ccCCCCcEEEEcCCch
Q 004729 360 DQLRRLEITKCRVMRVS-----IRCPQLEHLSLKRSNM 392 (733)
Q Consensus 360 ~~L~~L~L~~~~~~~i~-----~~~~~L~~L~L~~~~l 392 (733)
++|++|++++|.+..+. ..+++|+.|++++|.+
T Consensus 115 ~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l 152 (198)
T 1ds9_A 115 VNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp HHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred CCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcc
Confidence 88888888888654322 2344444444444443
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.11 E-value=2.8e-06 Score=82.25 Aligned_cols=97 Identities=20% Similarity=0.207 Sum_probs=60.1
Q ss_pred CCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEEeeccccchhc----ccCCCCcEEEE
Q 004729 312 RNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVS----IRCPQLEHLSL 387 (733)
Q Consensus 312 ~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~i~----~~~~~L~~L~L 387 (733)
++|++|+|++|.++ .++..+..+++|++|+|++|.+....+..+..+++|++|++++|.+..+. ..+++|+.|+|
T Consensus 31 ~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L 109 (193)
T 2wfh_A 31 RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSL 109 (193)
T ss_dssp TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEEC
Confidence 45666666666665 33345566666666666666666554455556666666666666655443 34566777777
Q ss_pred cCCchHH----HhhCCCCccEEEEec
Q 004729 388 KRSNMAQ----AVLNCPLLHLLDIAS 409 (733)
Q Consensus 388 ~~~~l~~----~~~~~~~L~~L~L~~ 409 (733)
++|.+.. .+..+++|+.|++++
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~ 135 (193)
T 2wfh_A 110 HGNDISVVPEGAFNDLSALSHLAIGA 135 (193)
T ss_dssp CSSCCCBCCTTTTTTCTTCCEEECCS
T ss_pred CCCCCCeeChhhhhcCccccEEEeCC
Confidence 6665543 245677788888876
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=98.10 E-value=9.9e-07 Score=103.32 Aligned_cols=144 Identities=11% Similarity=0.098 Sum_probs=68.7
Q ss_pred hccCCCCCcEEEEecCcCCcccccccccCCCccEEEeeccccchhc---ccCCCCcEEEEcCCchHH---HhhCCCCccE
Q 004729 331 ALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVS---IRCPQLEHLSLKRSNMAQ---AVLNCPLLHL 404 (733)
Q Consensus 331 ~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~i~---~~~~~L~~L~L~~~~l~~---~~~~~~~L~~ 404 (733)
.+..+++|+.|+|++|.+.. ++.....+++|++|+|++|.+..++ ..+++|+.|+|++|.+.. .+..+++|++
T Consensus 219 ~~~~l~~L~~L~Ls~n~l~~-l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~ 297 (727)
T 4b8c_D 219 SKYDDQLWHALDLSNLQIFN-ISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKY 297 (727)
T ss_dssp ---CCCCCCEEECTTSCCSC-CCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSE
T ss_pred hhccCCCCcEEECCCCCCCC-CChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCE
Confidence 34445555555555555442 2222224555555555555544333 234555555555554442 2456778888
Q ss_pred EEEecCCCCChHHHHHHHhcCCCCcEEeccCCCCCChhHHHHHHHhcccccccccccCCCCCcCCCCCCCccEEEeCC
Q 004729 405 LDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNISLESVRLPMLTVLQLHS 482 (733)
Q Consensus 405 L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~~~l~~L~~L~L~~ 482 (733)
|+|+++ .+.. ++..+..+++|+.|+|+++. ++......+......+..|.+.++... ..-...|+.|++..
T Consensus 298 L~L~~N-~l~~--lp~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~~~~~~~~l~l~~N~l~---~~~p~~l~~l~l~~ 368 (727)
T 4b8c_D 298 FYFFDN-MVTT--LPWEFGNLCNLQFLGVEGNP-LEKQFLKILTEKSVTGLIFYLRDNRPE---IPLPHERRFIEINT 368 (727)
T ss_dssp EECCSS-CCCC--CCSSTTSCTTCCCEECTTSC-CCSHHHHHHHHHHHHHHHHHHHHCCCC---CCCCCC--------
T ss_pred EECCCC-CCCc--cChhhhcCCCccEEeCCCCc-cCCCChHHHhhcchhhhHHhhccCccc---CcCccccceeEeec
Confidence 888875 4543 23336678899999999887 654433333211122233455554321 11233566666655
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=98.09 E-value=2.6e-06 Score=80.99 Aligned_cols=100 Identities=12% Similarity=0.117 Sum_probs=66.1
Q ss_pred CCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEEeeccccchhc----ccCCCCcEEEE
Q 004729 312 RNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVS----IRCPQLEHLSL 387 (733)
Q Consensus 312 ~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~i~----~~~~~L~~L~L 387 (733)
++|++|+++++.+.......+..+++|++|++++|.+.......+..+++|++|++++|.+..++ ..+++|+.|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence 56777777777666444444566777777777777666544445556777777777777665443 34567777777
Q ss_pred cCCchHHH----hhCCCCccEEEEecCC
Q 004729 388 KRSNMAQA----VLNCPLLHLLDIASCH 411 (733)
Q Consensus 388 ~~~~l~~~----~~~~~~L~~L~L~~c~ 411 (733)
++|.+..+ +..+++|++|+++++.
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 108 DTNQLKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred cCCcceEeCHHHhcCCcccCEEEecCCC
Confidence 77765532 4567888888888853
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=98.07 E-value=4.3e-06 Score=79.45 Aligned_cols=119 Identities=12% Similarity=0.074 Sum_probs=88.3
Q ss_pred CCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEEeeccccchhc----ccCCCCcEEEEcC
Q 004729 314 LEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVS----IRCPQLEHLSLKR 389 (733)
Q Consensus 314 L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~i~----~~~~~L~~L~L~~ 389 (733)
.+.++++++.+.. ++. .-.++|++|+++++.+..........+++|++|++++|.+..++ ..+++|+.|++++
T Consensus 9 ~~~l~~~~~~l~~-~p~--~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLTS-VPT--GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCSS-CCT--TCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCcc-CCC--CCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 5678887777663 222 22478999999999887665566678899999999999877554 4678999999999
Q ss_pred CchHHH----hhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCCC
Q 004729 390 SNMAQA----VLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCS 437 (733)
Q Consensus 390 ~~l~~~----~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~ 437 (733)
|.+..+ +..+++|++|+++++ .+.... ...+..+++|+.|+++++.
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~-~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTN-QLKSVP-DGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSS-CCSCCC-TTTTTTCTTCCEEECCSSC
T ss_pred CCccccCHHHhhCCcccCEEECcCC-cceEeC-HHHhcCCcccCEEEecCCC
Confidence 877643 467889999999985 455322 2334668899999999887
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.05 E-value=4.8e-06 Score=80.52 Aligned_cols=117 Identities=15% Similarity=0.118 Sum_probs=77.3
Q ss_pred CEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEEeeccccchhc----ccCCCCcEEEEcCC
Q 004729 315 EALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVS----IRCPQLEHLSLKRS 390 (733)
Q Consensus 315 ~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~i~----~~~~~L~~L~L~~~ 390 (733)
+.++++++.++. ++..+ .++|++|++++|.+. .++..+..+++|+.|++++|.+..+. ..+++|+.|+|++|
T Consensus 13 ~~l~~~~~~l~~-ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLKV-LPKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCSS-CCSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCCc-CCCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 467777766652 22222 357888888888776 34455667788888888888776544 45678888888887
Q ss_pred chHHH----hhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCCC
Q 004729 391 NMAQA----VLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCS 437 (733)
Q Consensus 391 ~l~~~----~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~ 437 (733)
.+..+ +..+++|++|+++++ .+.... ...+..+++|+.|++.++.
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N-~l~~~~-~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGN-DISVVP-EGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSS-CCCBCC-TTTTTTCTTCCEEECCSSC
T ss_pred ccCEeCHHHhCCCCCCCEEECCCC-CCCeeC-hhhhhcCccccEEEeCCCC
Confidence 66533 556788888888874 454322 1234567788888888766
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=98.05 E-value=6.1e-05 Score=81.56 Aligned_cols=239 Identities=12% Similarity=0.199 Sum_probs=124.6
Q ss_pred cccccccccccCC-CCCcCCCCCCCccEEEeCCCCCCchHHHHHhhCCCCcCEEEEecCCCCcccccC----CCCCcEEE
Q 004729 451 CANLRILNSSYCP-NISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLE----LPRLQNIR 525 (733)
Q Consensus 451 ~~~L~~L~L~~~~-~l~~~~~~l~~L~~L~L~~c~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~----l~~L~~L~ 525 (733)
+..++.+.+.+.- .+......-.+|+.+.+.. .+......++.+ .+|+++.|.. .+..++.. +++|+.+.
T Consensus 112 ~~~l~~i~ip~~i~~I~~~aF~~~~L~~i~l~~--~i~~I~~~aF~~-~~L~~i~lp~--~l~~I~~~aF~~c~~L~~l~ 186 (401)
T 4fdw_A 112 LKGYNEIILPNSVKSIPKDAFRNSQIAKVVLNE--GLKSIGDMAFFN-STVQEIVFPS--TLEQLKEDIFYYCYNLKKAD 186 (401)
T ss_dssp CSSCSEEECCTTCCEECTTTTTTCCCSEEECCT--TCCEECTTTTTT-CCCCEEECCT--TCCEECSSTTTTCTTCCEEE
T ss_pred cCCccEEEECCccCEehHhhcccCCccEEEeCC--CccEECHHhcCC-CCceEEEeCC--CccEehHHHhhCcccCCeee
Confidence 3556666654321 2222222223677887765 244444444444 3577777764 33433321 34555554
Q ss_pred eccccCCcccccccccccee--ecccCcCCceeeeccCccccccccccccHHHHHhcCCCCcEEeecCCCCCChhhhhhh
Q 004729 526 LVHCRKFADLNLRAMMLSSI--MVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVF 603 (733)
Q Consensus 526 L~~c~~l~~l~l~~~~L~~l--~l~~c~~L~~L~l~~n~L~~l~~~~~~~L~~l~~~~~~L~~L~Ls~C~~lt~~~~~~~ 603 (733)
+.. +.+..+ ..-.|.+|+.+.+..+ ++.+.. ..+..|++|+.+++.+ .++......|
T Consensus 187 l~~-----------n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~-------~aF~~~~~L~~l~l~~--~l~~I~~~aF 245 (401)
T 4fdw_A 187 LSK-----------TKITKLPASTFVYAGIEEVLLPVT-LKEIGS-------QAFLKTSQLKTIEIPE--NVSTIGQEAF 245 (401)
T ss_dssp CTT-----------SCCSEECTTTTTTCCCSEEECCTT-CCEECT-------TTTTTCTTCCCEECCT--TCCEECTTTT
T ss_pred cCC-----------CcceEechhhEeecccCEEEeCCc-hheehh-------hHhhCCCCCCEEecCC--CccCcccccc
Confidence 432 222222 0112567777777633 444421 1223677888888875 3554444445
Q ss_pred cCCCCCCCccEEEeecCCCCccccc----cCCCccEEecccccc----ccccc----cccccccEEeccc-ccccccccc
Q 004729 604 SDGGGCPMLKSLVLDNCEGLTVVRF----CSTSLVSLSLVGCRA----ITALE----LKCPILEKVCLDG-CDHIESASF 670 (733)
Q Consensus 604 ~~~~~l~~L~~L~L~~c~~L~~~~~----~~~sL~~L~L~~c~~----L~~l~----~~~p~L~~L~L~~-c~~L~~~~~ 670 (733)
. . .+|+.+.|.. .++.++. .|.+|+.+.+.+... ++.+. .+|++|+.+.|.+ ...+....|
T Consensus 246 ~---~-~~L~~i~lp~--~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~i~~I~~~aF 319 (401)
T 4fdw_A 246 R---E-SGITTVKLPN--GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPESIRILGQGLL 319 (401)
T ss_dssp T---T-CCCSEEEEET--TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTTCCEECTTTT
T ss_pred c---c-CCccEEEeCC--CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCceEEEhhhhh
Confidence 2 2 5788888844 3555432 677888888765211 11222 3688888888875 333333334
Q ss_pred cc-cCCcEEEecCCCCccccccCcc---cccEEEecCCCCC---CccCCCCC-CccEEecc
Q 004729 671 VP-VALQSLNLGICPKLSTLGIEAL---HMVVLELKGCGVL---SDAYINCP-LLTSLDAS 723 (733)
Q Consensus 671 ~~-~~L~~L~L~~c~~L~~l~~~~~---~L~~L~l~~c~~L---~~~~~~~p-~L~~L~l~ 723 (733)
.. .+|+.+.|.. +++.+...++ +|++|.+.++..- .....+|+ .++.|.|.
T Consensus 320 ~~c~~L~~l~lp~--~l~~I~~~aF~~~~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp 378 (401)
T 4fdw_A 320 GGNRKVTQLTIPA--NVTQINFSAFNNTGIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVP 378 (401)
T ss_dssp TTCCSCCEEEECT--TCCEECTTSSSSSCCCEEEECCSSCCBCCCSSCCCSCTTCCEEEEC
T ss_pred cCCCCccEEEECc--cccEEcHHhCCCCCCCEEEEcCCCCcccccccccCCCCCccEEEeC
Confidence 32 5677777743 3666554333 5778888775321 12222564 56777664
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=98.05 E-value=2.5e-06 Score=82.44 Aligned_cols=98 Identities=17% Similarity=0.201 Sum_probs=58.3
Q ss_pred CCCEEEecCccCChHHHH-hccCCCCCcEEEEecCcCCcccccccccCCCccEEEeeccccchhc----ccCCCCcEEEE
Q 004729 313 NLEALTLGRGQLGDAFFH-ALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVS----IRCPQLEHLSL 387 (733)
Q Consensus 313 ~L~~L~Ls~~~i~~~~~~-~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~i~----~~~~~L~~L~L 387 (733)
+|++|++++|.+...... .+..+++|++|+|++|.+....+..+..+++|++|++++|.+..+. ..+++|+.|+|
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 109 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 566666666665533222 2455666666666666665554555556666666666666655433 24566666666
Q ss_pred cCCchHH----HhhCCCCccEEEEecC
Q 004729 388 KRSNMAQ----AVLNCPLLHLLDIASC 410 (733)
Q Consensus 388 ~~~~l~~----~~~~~~~L~~L~L~~c 410 (733)
++|.+.. .+..+++|++|++++.
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N 136 (192)
T 1w8a_A 110 YDNQISCVMPGSFEHLNSLTSLNLASN 136 (192)
T ss_dssp CSSCCCEECTTSSTTCTTCCEEECTTC
T ss_pred CCCcCCeeCHHHhhcCCCCCEEEeCCC
Confidence 6665542 3456778888888774
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=97.96 E-value=0.00012 Score=79.26 Aligned_cols=9 Identities=11% Similarity=0.338 Sum_probs=6.3
Q ss_pred CCcEEeccC
Q 004729 427 QLESLDMSN 435 (733)
Q Consensus 427 ~L~~L~L~~ 435 (733)
+|+.+.+..
T Consensus 136 ~L~~i~l~~ 144 (401)
T 4fdw_A 136 QIAKVVLNE 144 (401)
T ss_dssp CCSEEECCT
T ss_pred CccEEEeCC
Confidence 677777764
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.96 E-value=6.2e-06 Score=93.59 Aligned_cols=123 Identities=20% Similarity=0.271 Sum_probs=71.9
Q ss_pred CCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEEeeccccchhcccCCCCcEEEEcCCch
Q 004729 313 NLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIRCPQLEHLSLKRSNM 392 (733)
Q Consensus 313 ~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~i~~~~~~L~~L~L~~~~l 392 (733)
.|+.|+|++|.++. ++. +..+++|++|+|++|.+. .++..+..+++|+.|+|++|.+..++
T Consensus 442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp---------------- 502 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENVD---------------- 502 (567)
T ss_dssp TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCG----------------
T ss_pred CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCCCc----------------
Confidence 57888888887774 333 677888888888888777 45555667778888888777654332
Q ss_pred HHHhhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCCCCCChh--HHHHHHHhcccccccc
Q 004729 393 AQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDE--SLREIALSCANLRILN 458 (733)
Q Consensus 393 ~~~~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~--~l~~l~~~~~~L~~L~ 458 (733)
.+..+++|+.|+++++ .++....+..+..+++|+.|+++++. ++.. ....+...+++|+.|+
T Consensus 503 --~l~~l~~L~~L~Ls~N-~l~~~~~p~~l~~l~~L~~L~L~~N~-l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 503 --GVANLPRLQELLLCNN-RLQQSAAIQPLVSCPRLVLLNLQGNS-LCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp --GGTTCSSCCEEECCSS-CCCSSSTTGGGGGCTTCCEEECTTSG-GGGSSSCTTHHHHHCTTCSEEE
T ss_pred --ccCCCCCCcEEECCCC-CCCCCCCcHHHhcCCCCCEEEecCCc-CCCCccHHHHHHHHCcccCccC
Confidence 2334555555555553 33332112334456666666666654 2221 1223333456666654
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=97.94 E-value=6.6e-06 Score=79.41 Aligned_cols=118 Identities=15% Similarity=0.163 Sum_probs=82.9
Q ss_pred CEEEecCccCChHHHHhccCCCCCcEEEEecCcCCccccc-ccccCCCccEEEeeccccchh----cccCCCCcEEEEcC
Q 004729 315 EALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQE-IPINHDQLRRLEITKCRVMRV----SIRCPQLEHLSLKR 389 (733)
Q Consensus 315 ~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~-~~~~~~~L~~L~L~~~~~~~i----~~~~~~L~~L~L~~ 389 (733)
+.++++++.++ .++..+ .++|++|++++|.+...... .+..+++|++|++++|.+..+ ...+++|+.|+|++
T Consensus 11 ~~l~~s~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCC--CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 67888877765 233322 24888888888887655443 466788889999988887655 24578888888888
Q ss_pred CchHHH----hhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCCC
Q 004729 390 SNMAQA----VLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCS 437 (733)
Q Consensus 390 ~~l~~~----~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~ 437 (733)
|.+..+ +..+++|++|+++++ .+.... +..+..+++|+.|+++++.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~-~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDN-QISCVM-PGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSS-CCCEEC-TTSSTTCTTCCEEECTTCC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCC-cCCeeC-HHHhhcCCCCCEEEeCCCC
Confidence 877643 556788889988884 455421 2334567888889888876
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=97.88 E-value=0.0001 Score=70.46 Aligned_cols=128 Identities=13% Similarity=0.089 Sum_probs=60.6
Q ss_pred hHHHHHHhhcCCCCCEEEecCc-cCChHHHH----hccCCCCCcEEEEecCcCCcc----cccccccCCCccEEEeeccc
Q 004729 301 HLLVMKAVSLLRNLEALTLGRG-QLGDAFFH----ALADCSMLKSLNVNDATLGNG----VQEIPINHDQLRRLEITKCR 371 (733)
Q Consensus 301 ~~~~~~~l~~l~~L~~L~Ls~~-~i~~~~~~----~L~~~~~L~~L~L~~~~l~~~----~~~~~~~~~~L~~L~L~~~~ 371 (733)
.......+...+.|++|+|++| .+++.... .+...++|++|+|++|.+++. +.......+.|++|+|++|.
T Consensus 25 ~~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~ 104 (185)
T 1io0_A 25 EETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF 104 (185)
T ss_dssp HHHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC
T ss_pred HHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc
Confidence 3334445556666777777766 66654333 333456666666666655432 11111222333333333332
Q ss_pred cchhcccCCCCcEEEEcCCchHHHhhCCCCccEEEE--ecCCCCChHHH---HHHHhcCCCCcEEeccCCCCCChh
Q 004729 372 VMRVSIRCPQLEHLSLKRSNMAQAVLNCPLLHLLDI--ASCHKLSDAAI---RLAATSCPQLESLDMSNCSCVSDE 442 (733)
Q Consensus 372 ~~~i~~~~~~L~~L~L~~~~l~~~~~~~~~L~~L~L--~~c~~l~~~~l---~~l~~~~~~L~~L~L~~~~~l~~~ 442 (733)
+.... -..+...+...++|++|+| .+ +.+.+.+. ...+...++|++|+++++. +.+.
T Consensus 105 i~~~g------------~~~l~~~L~~n~~L~~L~L~~~~-N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~-i~~~ 166 (185)
T 1io0_A 105 ISGSG------------ILALVEALQSNTSLIELRIDNQS-QPLGNNVEMEIANMLEKNTTLLKFGYHFTQ-QGPR 166 (185)
T ss_dssp CCHHH------------HHHHHHGGGGCSSCCEEECCCCS-SCCCHHHHHHHHHHHHHCSSCCEEECCCSS-HHHH
T ss_pred CCHHH------------HHHHHHHHHhCCCceEEEecCCC-CCCCHHHHHHHHHHHHhCCCcCEEeccCCC-CChH
Confidence 11000 0011222444556666666 44 35665542 3334445666666666655 4433
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=97.87 E-value=3.8e-05 Score=73.57 Aligned_cols=114 Identities=12% Similarity=0.065 Sum_probs=58.2
Q ss_pred HHhhCCCCccEEEEecCCCCChHHHHH---HHhcCCCCcEEeccCCCCCChhHHHHHHH---hcccccccccccCCCCC-
Q 004729 394 QAVLNCPLLHLLDIASCHKLSDAAIRL---AATSCPQLESLDMSNCSCVSDESLREIAL---SCANLRILNSSYCPNIS- 466 (733)
Q Consensus 394 ~~~~~~~~L~~L~L~~c~~l~~~~l~~---l~~~~~~L~~L~L~~~~~l~~~~l~~l~~---~~~~L~~L~L~~~~~l~- 466 (733)
..+...++|++|+|++|..+.+.+... .+...++|++|+|+++. +++.+...++. ..++|++|+|++|..-.
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~-i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~ 108 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNVESNFISGS 108 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCC-CChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence 344555666666666543455544332 23334556666666655 55555444432 22344444444433110
Q ss_pred ------cCCCCCCCccEEEe--CCCCCCchHHHHHhh----CCCCcCEEEEecCC
Q 004729 467 ------LESVRLPMLTVLQL--HSCEGITSASMAAIS----HSYMLEVLELDNCN 509 (733)
Q Consensus 467 ------~~~~~l~~L~~L~L--~~c~~l~~~~~~~l~----~~~~L~~L~L~~~~ 509 (733)
......++|++|++ .+ +.+++.+...++ ..++|++|+|++|.
T Consensus 109 g~~~l~~~L~~n~~L~~L~L~~~~-N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 109 GILALVEALQSNTSLIELRIDNQS-QPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHHHHHGGGGCSSCCEEECCCCS-SCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHHHHHHhCCCceEEEecCCC-CCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 11113456777777 44 557766654443 34677777776663
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=97.87 E-value=4.6e-05 Score=82.37 Aligned_cols=99 Identities=21% Similarity=0.381 Sum_probs=46.8
Q ss_pred cccCcCCceeeeccCccccccccccccHHHHHhcCCCCcEEeecCCCCCChhhhhhhcCCCCCCCccEEEeecCCCCccc
Q 004729 547 VSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVV 626 (733)
Q Consensus 547 l~~c~~L~~L~l~~n~L~~l~~~~~~~L~~l~~~~~~L~~L~Ls~C~~lt~~~~~~~~~~~~l~~L~~L~L~~c~~L~~~ 626 (733)
+.+|++|+.+.+. +.++.+.- ..+.+|.+|+.+.|.. .++...-..| .+|.+|+.+.|.. +++.+
T Consensus 284 F~~c~~L~~i~l~-~~i~~I~~-------~aF~~c~~L~~i~lp~--~v~~I~~~aF---~~C~~L~~i~ip~--sv~~I 348 (394)
T 4gt6_A 284 FMNCPALQDIEFS-SRITELPE-------SVFAGCISLKSIDIPE--GITQILDDAF---AGCEQLERIAIPS--SVTKI 348 (394)
T ss_dssp TTTCTTCCEEECC-TTCCEECT-------TTTTTCTTCCEEECCT--TCCEECTTTT---TTCTTCCEEEECT--TCCBC
T ss_pred cccccccccccCC-CcccccCc-------eeecCCCCcCEEEeCC--cccEehHhHh---hCCCCCCEEEECc--ccCEE
Confidence 4566666666654 23333311 1123566777777754 3443333334 4677777777743 24444
Q ss_pred cc----cCCCccEEeccccccccccccccccccEEecc
Q 004729 627 RF----CSTSLVSLSLVGCRAITALELKCPILEKVCLD 660 (733)
Q Consensus 627 ~~----~~~sL~~L~L~~c~~L~~l~~~~p~L~~L~L~ 660 (733)
+. .|.+|+.+.+.+..........|.+|+.+.+.
T Consensus 349 ~~~aF~~C~~L~~i~~~~~~~~~~~~~~~~~L~~i~i~ 386 (394)
T 4gt6_A 349 PESAFSNCTALNNIEYSGSRSQWNAISTDSGLQNLPVA 386 (394)
T ss_dssp CGGGGTTCTTCCEEEESSCHHHHHTCBCCCCC------
T ss_pred hHhHhhCCCCCCEEEECCceeehhhhhccCCCCEEEeC
Confidence 32 56777777766532111112245555555543
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=97.86 E-value=1.9e-06 Score=101.01 Aligned_cols=109 Identities=18% Similarity=0.138 Sum_probs=84.1
Q ss_pred HHHHhhcCCCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEEeeccccchhc---ccCC
Q 004729 304 VMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVS---IRCP 380 (733)
Q Consensus 304 ~~~~l~~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~i~---~~~~ 380 (733)
....+..+++|+.|+|++|.+. .++..+..+++|++|+|++|.+. .++..+..+++|+.|+|++|.+..++ ..++
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~ 293 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCF 293 (727)
T ss_dssp ------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGT
T ss_pred ChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCccChhhcCCC
Confidence 3455678899999999999887 45555668899999999999888 56666678999999999999887665 4578
Q ss_pred CCcEEEEcCCchHHH---hhCCCCccEEEEecCCCCCh
Q 004729 381 QLEHLSLKRSNMAQA---VLNCPLLHLLDIASCHKLSD 415 (733)
Q Consensus 381 ~L~~L~L~~~~l~~~---~~~~~~L~~L~L~~c~~l~~ 415 (733)
+|+.|+|++|.+..+ +..+++|+.|+|+++ .+..
T Consensus 294 ~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N-~l~~ 330 (727)
T 4b8c_D 294 QLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGN-PLEK 330 (727)
T ss_dssp TCSEEECCSSCCCCCCSSTTSCTTCCCEECTTS-CCCS
T ss_pred CCCEEECCCCCCCccChhhhcCCCccEEeCCCC-ccCC
Confidence 899999999876543 677899999999995 4553
|
| >3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.83 E-value=2.6e-06 Score=85.69 Aligned_cols=47 Identities=23% Similarity=0.429 Sum_probs=43.4
Q ss_pred cccCCCHHHHHHHHhcCChhhHHHHHHHHHHHHHhhcCCCCeeEEee
Q 004729 223 IRMDLTDDLLHMVFSFLDYVDLCRAAIVCRQWRAASAHEDFWRCLNF 269 (733)
Q Consensus 223 ~~~~LP~ElL~~If~~L~~~dl~~~~lVck~W~~l~~~~~lw~~l~l 269 (733)
.+..||+||+.+||+||+++|++++++|||+||.++.++.+|+.+-.
T Consensus 4 ~l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~la~D~~LWr~~l~ 50 (312)
T 3l2o_B 4 TLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWRYFLL 50 (312)
T ss_dssp HHHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHHHTCHHHHHHHHH
T ss_pred hhHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccchHHHHHHh
Confidence 46789999999999999999999999999999999999999987644
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=97.76 E-value=2.8e-05 Score=73.70 Aligned_cols=82 Identities=16% Similarity=0.084 Sum_probs=39.1
Q ss_pred CCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEEeeccccchhcccCCCCcEEEEcCCc
Q 004729 312 RNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIRCPQLEHLSLKRSN 391 (733)
Q Consensus 312 ~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~i~~~~~~L~~L~L~~~~ 391 (733)
++|++|+|++|.+....+..+..+++|++|+|++|.+.......+..+++|++|+|++|.+..++.
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~-------------- 98 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPR-------------- 98 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT--------------
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCH--------------
Confidence 345555555555543333444445555555555554443333333344444444444444332221
Q ss_pred hHHHhhCCCCccEEEEec
Q 004729 392 MAQAVLNCPLLHLLDIAS 409 (733)
Q Consensus 392 l~~~~~~~~~L~~L~L~~ 409 (733)
..+..+++|++|++++
T Consensus 99 --~~~~~l~~L~~L~L~~ 114 (174)
T 2r9u_A 99 --GAFDNLKSLTHIYLYN 114 (174)
T ss_dssp --TTTTTCTTCSEEECCS
T ss_pred --HHhccccCCCEEEeCC
Confidence 1244566677777766
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=97.73 E-value=3.4e-05 Score=72.75 Aligned_cols=82 Identities=15% Similarity=0.075 Sum_probs=39.5
Q ss_pred CCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEEeeccccchhcccCCCCcEEEEcCCc
Q 004729 312 RNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIRCPQLEHLSLKRSN 391 (733)
Q Consensus 312 ~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~i~~~~~~L~~L~L~~~~ 391 (733)
++|++|+|++|.+....+..+..+++|++|+|++|.+....+..+..+++|++|+|++|.+..++.
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~-------------- 95 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPR-------------- 95 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT--------------
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCH--------------
Confidence 345555555555543333444445555555555555443333333444445555554444332221
Q ss_pred hHHHhhCCCCccEEEEec
Q 004729 392 MAQAVLNCPLLHLLDIAS 409 (733)
Q Consensus 392 l~~~~~~~~~L~~L~L~~ 409 (733)
..+..+++|++|++++
T Consensus 96 --~~~~~l~~L~~L~L~~ 111 (170)
T 3g39_A 96 --GAFDNLKSLTHIWLLN 111 (170)
T ss_dssp --TTTTTCTTCCEEECCS
T ss_pred --HHhcCCCCCCEEEeCC
Confidence 1244566677777766
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00011 Score=79.32 Aligned_cols=99 Identities=21% Similarity=0.457 Sum_probs=69.6
Q ss_pred ecccCcCCceeeeccCccccccccccccHHHHHhcCCCCcEEeecCCCCCChhhhhhhcCCCCCCCccEEEeecCCCCcc
Q 004729 546 MVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTV 625 (733)
Q Consensus 546 ~l~~c~~L~~L~l~~n~L~~l~~~~~~~L~~l~~~~~~L~~L~Ls~C~~lt~~~~~~~~~~~~l~~L~~L~L~~c~~L~~ 625 (733)
.+.+|..|+.+.+..+- ..+. . ..+..|++|+.+.+.. .++......| .+|.+|+.+.|.. +++.
T Consensus 260 aF~~c~~L~~i~lp~~~-~~I~---~----~aF~~c~~L~~i~l~~--~i~~I~~~aF---~~c~~L~~i~lp~--~v~~ 324 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSV-VSIG---T----GAFMNCPALQDIEFSS--RITELPESVF---AGCISLKSIDIPE--GITQ 324 (394)
T ss_dssp TTTTCSSCCEEECCTTC-CEEC---T----TTTTTCTTCCEEECCT--TCCEECTTTT---TTCTTCCEEECCT--TCCE
T ss_pred eeeecccccEEeccccc-ceec---C----cccccccccccccCCC--cccccCceee---cCCCCcCEEEeCC--cccE
Confidence 47889999999886542 2221 1 1234789999999964 5655444455 5799999999965 3555
Q ss_pred ccc----cCCCccEEeccccccccccc----cccccccEEeccc
Q 004729 626 VRF----CSTSLVSLSLVGCRAITALE----LKCPILEKVCLDG 661 (733)
Q Consensus 626 ~~~----~~~sL~~L~L~~c~~L~~l~----~~~p~L~~L~L~~ 661 (733)
++. .|.+|+++.|.. +++.+. .+|++|+.+++.+
T Consensus 325 I~~~aF~~C~~L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~~ 366 (394)
T 4gt6_A 325 ILDDAFAGCEQLERIAIPS--SVTKIPESAFSNCTALNNIEYSG 366 (394)
T ss_dssp ECTTTTTTCTTCCEEEECT--TCCBCCGGGGTTCTTCCEEEESS
T ss_pred ehHhHhhCCCCCCEEEECc--ccCEEhHhHhhCCCCCCEEEECC
Confidence 543 689999999954 355544 4799999999987
|
| >2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A | Back alignment and structure |
|---|
Probab=97.71 E-value=5e-06 Score=84.74 Aligned_cols=46 Identities=24% Similarity=0.455 Sum_probs=41.9
Q ss_pred ccccCCCHHHHHHHHhcCChhhHH-HHHHHHHHHHHhhcCCCCeeEE
Q 004729 222 EIRMDLTDDLLHMVFSFLDYVDLC-RAAIVCRQWRAASAHEDFWRCL 267 (733)
Q Consensus 222 ~~~~~LP~ElL~~If~~L~~~dl~-~~~lVck~W~~l~~~~~lw~~l 267 (733)
..+..||+|++.+||++|+.++++ +|++|||+|+.++.++.+|++.
T Consensus 49 ~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~~~~~w~~~ 95 (297)
T 2e31_A 49 EYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGAPLWLLK 95 (297)
T ss_dssp CCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHHTSHHHHHHH
T ss_pred cChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHhcChHHHHHH
Confidence 345689999999999999999999 9999999999999998888864
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=97.59 E-value=3.2e-05 Score=72.98 Aligned_cols=85 Identities=19% Similarity=0.125 Sum_probs=69.7
Q ss_pred CCccEEEEcCCCchhHHHHHHhhcCCCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEE
Q 004729 287 PNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLE 366 (733)
Q Consensus 287 ~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~ 366 (733)
++++.|++++ +.+.......+..+++|++|+|++|.++......+..+++|++|+|++|.+....+..+..+++|++|+
T Consensus 30 ~~l~~L~L~~-N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 108 (170)
T 3g39_A 30 TTTQVLYLYD-NQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIW 108 (170)
T ss_dssp TTCSEEECCS-SCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCcEEEcCC-CcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEE
Confidence 6789999988 455555556678899999999999999865555678899999999999998876666677788888888
Q ss_pred eecccc
Q 004729 367 ITKCRV 372 (733)
Q Consensus 367 L~~~~~ 372 (733)
+.+|++
T Consensus 109 L~~N~~ 114 (170)
T 3g39_A 109 LLNNPW 114 (170)
T ss_dssp CCSSCB
T ss_pred eCCCCC
Confidence 888764
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=97.56 E-value=3.7e-05 Score=72.89 Aligned_cols=86 Identities=16% Similarity=0.095 Sum_probs=69.2
Q ss_pred CCccEEEEcCCCchhHHHHHHhhcCCCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEE
Q 004729 287 PNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLE 366 (733)
Q Consensus 287 ~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~ 366 (733)
++++.|++++ +.+.......+..+++|++|+|++|.+.......+..+++|++|+|++|.+.......+..+++|++|+
T Consensus 33 ~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~ 111 (174)
T 2r9u_A 33 TDKQRLWLNN-NQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIY 111 (174)
T ss_dssp TTCSEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred CCCcEEEeCC-CCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEE
Confidence 6789999988 445555556678899999999999999865445567899999999999998866665677788888888
Q ss_pred eeccccc
Q 004729 367 ITKCRVM 373 (733)
Q Consensus 367 L~~~~~~ 373 (733)
+.+|++.
T Consensus 112 L~~N~~~ 118 (174)
T 2r9u_A 112 LYNNPWD 118 (174)
T ss_dssp CCSSCBC
T ss_pred eCCCCcc
Confidence 8887653
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=97.30 E-value=4e-05 Score=84.17 Aligned_cols=53 Identities=15% Similarity=0.387 Sum_probs=47.3
Q ss_pred cccccccCCCHHHHHHHHhcCChhhHHHHHHHHHHHHHhhcC-CCCeeEEeeCC
Q 004729 219 EDLEIRMDLTDDLLHMVFSFLDYVDLCRAAIVCRQWRAASAH-EDFWRCLNFEN 271 (733)
Q Consensus 219 ~~~~~~~~LP~ElL~~If~~L~~~dl~~~~lVck~W~~l~~~-~~lw~~l~l~~ 271 (733)
...|++..||+|++.+||+||+.++++++++|||+|+.++.+ +.+|+++-+..
T Consensus 10 ~~~d~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~~w~~~~~~~ 63 (464)
T 3v7d_B 10 LKRDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLLISE 63 (464)
T ss_dssp CCCCHHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTTCHHHHHHHHHHT
T ss_pred cccCChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcc
Confidence 345888999999999999999999999999999999999988 89999876543
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=97.28 E-value=6e-05 Score=82.28 Aligned_cols=48 Identities=25% Similarity=0.630 Sum_probs=45.1
Q ss_pred ccccccCCCHH----HHHHHHhcCChhhHHHHHHHHHHHHHhhcCCCCeeEE
Q 004729 220 DLEIRMDLTDD----LLHMVFSFLDYVDLCRAAIVCRQWRAASAHEDFWRCL 267 (733)
Q Consensus 220 ~~~~~~~LP~E----lL~~If~~L~~~dl~~~~lVck~W~~l~~~~~lw~~l 267 (733)
..|++..||+| ++.+||+||+..+++++++|||+|+.++.++.+|+.+
T Consensus 7 ~~d~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~w~~~ 58 (435)
T 1p22_A 7 QRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKL 58 (435)
T ss_dssp CCCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHHH
T ss_pred hcChHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcChHHHHHH
Confidence 45888999999 9999999999999999999999999999999999976
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=97.24 E-value=9.8e-05 Score=78.13 Aligned_cols=85 Identities=18% Similarity=0.163 Sum_probs=68.1
Q ss_pred hhcCCCCCEEEecC-ccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEEeeccccchhccc---CCCCc
Q 004729 308 VSLLRNLEALTLGR-GQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIR---CPQLE 383 (733)
Q Consensus 308 l~~l~~L~~L~Ls~-~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~i~~~---~~~L~ 383 (733)
+..+.+|++|+|++ |.+....+..+..+++|+.|+|++|.+....+..+..+++|++|+|++|.+..++.. ...|+
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~L~ 106 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQ 106 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCCCC
T ss_pred CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCCce
Confidence 77788899999996 888866667788899999999999998877777778899999999999988766532 12377
Q ss_pred EEEEcCCch
Q 004729 384 HLSLKRSNM 392 (733)
Q Consensus 384 ~L~L~~~~l 392 (733)
.|+|.+|.+
T Consensus 107 ~l~l~~N~~ 115 (347)
T 2ifg_A 107 ELVLSGNPL 115 (347)
T ss_dssp EEECCSSCC
T ss_pred EEEeeCCCc
Confidence 777777654
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=97.19 E-value=0.0034 Score=67.02 Aligned_cols=73 Identities=23% Similarity=0.391 Sum_probs=36.3
Q ss_pred cCCCCcEEeecCCCCCChhhhhhhcCCCCCCCccEEEeecCCCCccccc----cCCCccEEeccccccccccc----ccc
Q 004729 580 QCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRF----CSTSLVSLSLVGCRAITALE----LKC 651 (733)
Q Consensus 580 ~~~~L~~L~Ls~C~~lt~~~~~~~~~~~~l~~L~~L~L~~c~~L~~~~~----~~~sL~~L~L~~c~~L~~l~----~~~ 651 (733)
.|..|+.+.+.. .++......| ..+.+|+.+.+.. +++.++. .|.+|+.+.+.+ ..++.+. .+|
T Consensus 238 ~~~~L~~i~lp~--~v~~I~~~aF---~~~~~l~~i~l~~--~i~~i~~~aF~~c~~L~~i~l~~-~~i~~I~~~aF~~c 309 (379)
T 4h09_A 238 GMKALDEIAIPK--NVTSIGSFLL---QNCTALKTLNFYA--KVKTVPYLLCSGCSNLTKVVMDN-SAIETLEPRVFMDC 309 (379)
T ss_dssp TCSSCCEEEECT--TCCEECTTTT---TTCTTCCEEEECC--CCSEECTTTTTTCTTCCEEEECC-TTCCEECTTTTTTC
T ss_pred CCccceEEEcCC--CccEeCcccc---ceeehhccccccc--cceeccccccccccccccccccc-cccceehhhhhcCC
Confidence 456666666654 2333222223 3456666666633 2333322 456666666644 2233332 356
Q ss_pred ccccEEecc
Q 004729 652 PILEKVCLD 660 (733)
Q Consensus 652 p~L~~L~L~ 660 (733)
.+|+++.|.
T Consensus 310 ~~L~~i~lp 318 (379)
T 4h09_A 310 VKLSSVTLP 318 (379)
T ss_dssp TTCCEEECC
T ss_pred CCCCEEEcC
Confidence 666666664
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00039 Score=73.40 Aligned_cols=93 Identities=23% Similarity=0.244 Sum_probs=71.9
Q ss_pred CEEEecCc-cCChHHHHhccCCCCCcEEEEec-CcCCcccccccccCCCccEEEeeccccchhc----ccCCCCcEEEEc
Q 004729 315 EALTLGRG-QLGDAFFHALADCSMLKSLNVND-ATLGNGVQEIPINHDQLRRLEITKCRVMRVS----IRCPQLEHLSLK 388 (733)
Q Consensus 315 ~~L~Ls~~-~i~~~~~~~L~~~~~L~~L~L~~-~~l~~~~~~~~~~~~~L~~L~L~~~~~~~i~----~~~~~L~~L~L~ 388 (733)
..++++++ .+. .++. +..+++|++|+|++ |.+....+..+..+++|+.|+|++|.+..++ ..+++|+.|+|+
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 35677776 676 3555 88889999999996 8888766677788999999999999876544 568999999999
Q ss_pred CCchHHH----hhCCCCccEEEEecC
Q 004729 389 RSNMAQA----VLNCPLLHLLDIASC 410 (733)
Q Consensus 389 ~~~l~~~----~~~~~~L~~L~L~~c 410 (733)
+|.+..+ +..++ |+.|+|.+.
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N 113 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGN 113 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSS
T ss_pred CCccceeCHHHcccCC-ceEEEeeCC
Confidence 9887654 23333 999999884
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00011 Score=80.18 Aligned_cols=49 Identities=33% Similarity=0.508 Sum_probs=44.6
Q ss_pred ccccccCCCHHHHHHHHhcCChhhHHHHHHHHHHHHHhhcCCCCeeEEe
Q 004729 220 DLEIRMDLTDDLLHMVFSFLDYVDLCRAAIVCRQWRAASAHEDFWRCLN 268 (733)
Q Consensus 220 ~~~~~~~LP~ElL~~If~~L~~~dl~~~~lVck~W~~l~~~~~lw~~l~ 268 (733)
..|.+..||+|++.+||+||+.++++++++|||+|+.++.++.+|+.+-
T Consensus 15 ~~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~~~~~~~w~~~~ 63 (445)
T 2ovr_B 15 QRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKC 63 (445)
T ss_dssp CCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHHH
T ss_pred cCChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhhcCchhHhhhhe
Confidence 4577889999999999999999999999999999999999888898653
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=96.80 E-value=0.0083 Score=63.95 Aligned_cols=13 Identities=23% Similarity=0.432 Sum_probs=7.3
Q ss_pred hcCCCCcEEeccC
Q 004729 423 TSCPQLESLDMSN 435 (733)
Q Consensus 423 ~~~~~L~~L~L~~ 435 (733)
..|..|+.+.+..
T Consensus 155 ~~~~~l~~~~~~~ 167 (379)
T 4h09_A 155 YKAENLEKIEVSS 167 (379)
T ss_dssp TTCTTCCEEEECT
T ss_pred ccccccccccccc
Confidence 3456666665554
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0023 Score=64.67 Aligned_cols=62 Identities=18% Similarity=0.191 Sum_probs=39.1
Q ss_pred hcCCCCCEEEecCccCCh--HHHHhccCCCCCcEEEEecCcCCcc--cccccccCCCccEEEeecccc
Q 004729 309 SLLRNLEALTLGRGQLGD--AFFHALADCSMLKSLNVNDATLGNG--VQEIPINHDQLRRLEITKCRV 372 (733)
Q Consensus 309 ~~l~~L~~L~Ls~~~i~~--~~~~~L~~~~~L~~L~L~~~~l~~~--~~~~~~~~~~L~~L~L~~~~~ 372 (733)
..+++|+.|+|++|.+.. .++..+..+++|+.|+|++|.+... +.. ...+ +|++|+|.+|++
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~-l~~l-~L~~L~L~~Npl 232 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDK-IKGL-KLEELWLDGNSL 232 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGG-GTTS-CCSEEECTTSTT
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhh-cccC-CcceEEccCCcC
Confidence 467888888888887765 3334455678888888888876643 111 1122 666666666654
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=96.28 E-value=0.00088 Score=67.71 Aligned_cols=42 Identities=19% Similarity=0.237 Sum_probs=32.0
Q ss_pred cCCCCCcEEEEecCcCCc--ccccccccCCCccEEEeeccccch
Q 004729 333 ADCSMLKSLNVNDATLGN--GVQEIPINHDQLRRLEITKCRVMR 374 (733)
Q Consensus 333 ~~~~~L~~L~L~~~~l~~--~~~~~~~~~~~L~~L~L~~~~~~~ 374 (733)
.++++|++|+|++|.+.. .++.....+++|+.|+|++|.+..
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~ 210 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS 210 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCS
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCC
Confidence 468999999999998876 444555678888888888876653
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=95.98 E-value=0.016 Score=55.38 Aligned_cols=50 Identities=22% Similarity=0.310 Sum_probs=20.8
Q ss_pred hhCCCCccEEEEecCCCCChHHHHHH---HhcCCCCcEEeccCCCCCChhHHHH
Q 004729 396 VLNCPLLHLLDIASCHKLSDAAIRLA---ATSCPQLESLDMSNCSCVSDESLRE 446 (733)
Q Consensus 396 ~~~~~~L~~L~L~~c~~l~~~~l~~l---~~~~~~L~~L~L~~~~~l~~~~l~~ 446 (733)
...-+.|++|+|+++..+.+.+...+ +..-..|+.|+|++|. +.+.+...
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~-igd~ga~a 89 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTA-ISDSEARG 89 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSC-CBHHHHTT
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCC-CChHHHHH
Confidence 33344455555544324444432222 2222345555555544 44444333
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=95.96 E-value=0.089 Score=50.17 Aligned_cols=41 Identities=12% Similarity=0.088 Sum_probs=23.1
Q ss_pred hhCCCCccEEEEecCC--CCChHH---HHHHHhcCCCCcEEeccCC
Q 004729 396 VLNCPLLHLLDIASCH--KLSDAA---IRLAATSCPQLESLDMSNC 436 (733)
Q Consensus 396 ~~~~~~L~~L~L~~c~--~l~~~~---l~~l~~~~~~L~~L~L~~~ 436 (733)
+..-+.|++|+|+++. .+.+.+ +...+..-+.|+.|+++.+
T Consensus 122 L~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 122 TLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp TTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred HhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 3344557777776532 345443 3444555567777777644
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 733 | ||||
| d1fs1a1 | 41 | a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [ | 5e-10 | |
| d1p22a1 | 118 | a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (b | 6e-10 | |
| d1nexb1 | 100 | a.158.1.1 (B:270-369) Cdc4 F-box and linker domain | 1e-09 | |
| d2ovrb1 | 102 | a.158.1.1 (B:2263-2364) F-box/WD repeat-containing | 8e-09 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 4e-07 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 4e-05 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 5e-04 | |
| d1koha1 | 162 | c.10.2.3 (A:201-362) mRNA export factor tap {Human | 1e-05 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 0.001 |
| >d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: F-box domain superfamily: F-box domain family: F-box domain domain: Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.7 bits (127), Expect = 5e-10
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 226 DLTDDLLHMVFSFLDYVDLCRAAIVCRQWRAASAHEDFW 264
L D+LL +FS L +L + + VC++W ++ E W
Sbjct: 3 SLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLW 41
|
| >d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 118 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: F-box domain superfamily: F-box domain family: F-box domain domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.2 bits (132), Expect = 6e-10
Identities = 12/46 (26%), Positives = 21/46 (45%)
Query: 226 DLTDDLLHMVFSFLDYVDLCRAAIVCRQWRAASAHEDFWRCLNFEN 271
D + + S+LD LC A +VC++W ++ W+ L
Sbjct: 17 RGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERM 62
|
| >d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 100 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: F-box domain superfamily: F-box domain family: F-box domain domain: Cdc4 F-box and linker domains species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 53.9 bits (129), Expect = 1e-09
Identities = 10/63 (15%), Positives = 24/63 (38%), Gaps = 1/63 (1%)
Query: 226 DLTDDLLHMVFSFLDYVDLCRAAIVCRQWRA-ASAHEDFWRCLNFENRKISVEQFEDVCQ 284
L ++ +F++L + D+ + V + W W+ L +S + F +
Sbjct: 8 SLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLLISENFVSPKGFNSLNL 67
Query: 285 RYP 287
+
Sbjct: 68 KLS 70
|
| >d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 102 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: F-box domain superfamily: F-box domain family: F-box domain domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.2 bits (122), Expect = 8e-09
Identities = 16/42 (38%), Positives = 20/42 (47%)
Query: 226 DLTDDLLHMVFSFLDYVDLCRAAIVCRQWRAASAHEDFWRCL 267
L +L V SFL+ DL +AA CR WR + WR
Sbjct: 21 LLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREK 62
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.1 bits (118), Expect = 4e-07
Identities = 44/262 (16%), Positives = 78/262 (29%), Gaps = 11/262 (4%)
Query: 384 HLSLKRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDES 443
L L N+ V L + C + S +++ +D+SN + +
Sbjct: 4 TLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSV-IEVST 62
Query: 444 LREIALSCANLRILNSSYCP---NISLESVRLPMLTVLQLHSCEGITSASMAAISHSYML 500
L I C+ L+ L+ I + L L L C G + ++ + S
Sbjct: 63 LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS- 121
Query: 501 EVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAALHRINITS 560
LD NL +Q LNL + + R
Sbjct: 122 ---RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLV 178
Query: 561 NSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNC 620
+ S+ + + Q LQ + L+ C + G P LK+L +
Sbjct: 179 HLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLEL---GEIPTLKTLQVFGI 235
Query: 621 EGLTVVRFCSTSLVSLSLVGCR 642
++ +L L +
Sbjct: 236 VPDGTLQLLKEALPHLQINCSH 257
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.6 bits (101), Expect = 4e-05
Identities = 34/214 (15%), Positives = 64/214 (29%), Gaps = 19/214 (8%)
Query: 308 VSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEI 367
+S L+ L+L +L D + LA S L LN++ + G + RL+
Sbjct: 67 LSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCS-GFSEFALQTLLSSCSRLDE 125
Query: 368 TKCRVMRVSIRCPQLEHLSLKRSNMAQAVLN----------------CPLLHLLDIASCH 411
++ + Q L+ + S
Sbjct: 126 LNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDS 185
Query: 412 KLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNISLESVR 471
+ L+ L +S C + E+L E+ L+ L +
Sbjct: 186 VMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELG-EIPTLKTLQVFGIVPDGTLQLL 244
Query: 472 LPMLTVLQLHSCEGITSASMAAISHSYMLEVLEL 505
L LQ++ C T+ + I + E+ +
Sbjct: 245 KEALPHLQIN-CSHFTTIARPTIGNKKNQEIWGI 277
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.5 bits (93), Expect = 5e-04
Identities = 36/269 (13%), Positives = 81/269 (30%), Gaps = 39/269 (14%)
Query: 362 LRRLEITKCRVMRVSIRCPQLEHLSLKRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLA 421
R + + +++H+ L S + + +
Sbjct: 28 FRCPRSFMDQPLAEHFSPFRVQHMDL---------------------SNSVIEVSTLHGI 66
Query: 422 ATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNISLESVRLPMLTVLQLH 481
+ C +L++L + +SD + +A +NL LN S C S +++ + + +L
Sbjct: 67 LSQCSKLQNLSLEGLR-LSDPIVNTLA-KNSNLVRLNLSGCSGFSEFALQTLLSSCSRLD 124
Query: 482 SCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAMM 541
+ +T ++L R + +
Sbjct: 125 ELNLSWCFDFTEKHVQVAVA----HVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHL 180
Query: 542 LSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLAL----QCQCLQEVDLTDCESLTN 597
S V + N LQ LSL + ++ L + L+ + + + +
Sbjct: 181 DLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI--VPD 238
Query: 598 SVCEVFSDGGGCPMLKSLVLDNCEGLTVV 626
++ + P L+ NC T +
Sbjct: 239 GTLQLLKE--ALPHLQI----NCSHFTTI 261
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.0 bits (103), Expect = 1e-05
Identities = 27/147 (18%), Positives = 56/147 (38%), Gaps = 6/147 (4%)
Query: 362 LRRLEITKCRVMRVSIRC---PQLEHLSLKRSNMAQAVLNCPLLHLLDIASCHKLSDAAI 418
L L+ + +++ + + L LK ++ + +L+ S A +
Sbjct: 1 LNELKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLNRRSS---MAATL 57
Query: 419 RLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNISLESVRLPMLTVL 478
R+ + P+L SL++SN + + I NL+ILN S S + L
Sbjct: 58 RIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKL 117
Query: 479 QLHSCEGITSASMAAISHSYMLEVLEL 505
+ +G + + +Y+ + E
Sbjct: 118 EELWLDGNSLSDTFRDQSTYISAIRER 144
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.0 bits (91), Expect = 0.001
Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 5/64 (7%)
Query: 402 LHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIA---LSCANLRILN 458
+ LDI C +LSDA Q + + + +C +++ ++I+ L LN
Sbjct: 4 IQSLDI-QCEELSDARWAELLPLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELN 61
Query: 459 SSYC 462
Sbjct: 62 LRSN 65
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 733 | |||
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.77 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.71 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.59 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.51 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.46 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.45 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.41 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.39 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.35 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.15 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.1 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.09 | |
| d1fs1a1 | 41 | Skp2 {Human (Homo sapiens) [TaxId: 9606]} | 99.07 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 99.07 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 99.04 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.01 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 98.99 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 98.96 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 98.96 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 98.89 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 98.88 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 98.85 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 98.83 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 98.83 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 98.82 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 98.7 | |
| d1nexb1 | 100 | Cdc4 F-box and linker domains {Baker's yeast (Sacc | 98.6 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 98.59 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 98.56 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 98.52 | |
| d2ovrb1 | 102 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 98.42 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 98.33 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 98.31 | |
| d1p22a1 | 118 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 98.21 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 98.16 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 98.02 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 98.0 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 97.97 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 97.48 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 97.44 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 97.34 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 97.31 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 97.24 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 96.94 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 96.11 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 95.38 |
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.77 E-value=4.2e-19 Score=182.30 Aligned_cols=228 Identities=15% Similarity=0.283 Sum_probs=174.0
Q ss_pred CeeEEeeCCCCCCHHHHHHHHhhCCCccEEEEcCCCchhHHHHHHhhcCCCCCEEEecCccCChHHH-HhccCCCCCcEE
Q 004729 263 FWRCLNFENRKISVEQFEDVCQRYPNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFF-HALADCSMLKSL 341 (733)
Q Consensus 263 lw~~l~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~i~~~~~-~~L~~~~~L~~L 341 (733)
+|+++++....+.+..+..+..+. +..+.+.... .... ........+|++|+++++.++...+ ..+..|++|++|
T Consensus 1 LW~~lDLs~~~l~~~~l~~l~~~~--~~~lrl~~~~-~~~~-~~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L 76 (284)
T d2astb2 1 LWQTLDLTGKNLHPDVTGRLLSQG--VIAFRCPRSF-MDQP-LAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 76 (284)
T ss_dssp TSSEEECTTCBCCHHHHHHHHHTT--CSEEECTTCE-ECSC-CCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred CcCEEECCCCCCCchHHHHHHhcc--ceEeeccccc-cccc-hhhhccCCCCCEEECCCCccCHHHHHHHHHhCCCcccc
Confidence 699999999999998888887753 3344443311 1110 1112245689999999998886644 456789999999
Q ss_pred EEecCcCCcccccccccCCCccEEEeeccccchhcccCCCCcEEEEcCCchHHHhhCCCCccEEEEecCCCCChHHHHHH
Q 004729 342 NVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIRCPQLEHLSLKRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLA 421 (733)
Q Consensus 342 ~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~i~~~~~~L~~L~L~~~~l~~~~~~~~~L~~L~L~~c~~l~~~~l~~l 421 (733)
++.++.+.+........+++|++|++++|.. +.+.++..++..+++|++|++++|..+++..+...
T Consensus 77 ~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~--------------itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~ 142 (284)
T d2astb2 77 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSG--------------FSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVA 142 (284)
T ss_dssp ECTTCBCCHHHHHHHTTCTTCSEEECTTCBS--------------CCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHH
T ss_pred cccccCCCcHHHHHHhcCCCCcCcccccccc--------------ccccccchhhHHHHhccccccccccccccccchhh
Confidence 9999987765555556678888888877532 12334556678899999999999999998887654
Q ss_pred Hh-cCCCCcEEeccCCC-CCChhHHHHHHHhcccccccccccCCCCCcCC----CCCCCccEEEeCCCCCCchHHHHHhh
Q 004729 422 AT-SCPQLESLDMSNCS-CVSDESLREIALSCANLRILNSSYCPNISLES----VRLPMLTVLQLHSCEGITSASMAAIS 495 (733)
Q Consensus 422 ~~-~~~~L~~L~L~~~~-~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~----~~l~~L~~L~L~~c~~l~~~~~~~l~ 495 (733)
+. .+++|+.|+++++. .+++.++..++..|++|++|++++|..++... .++++|++|++++|..+++..+..++
T Consensus 143 ~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~ 222 (284)
T d2astb2 143 VAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELG 222 (284)
T ss_dssp HHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGG
T ss_pred hcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHh
Confidence 44 46899999999874 58889999999899999999999988765433 36899999999999999999888889
Q ss_pred CCCCcCEEEEecC
Q 004729 496 HSYMLEVLELDNC 508 (733)
Q Consensus 496 ~~~~L~~L~L~~~ 508 (733)
++++|++|++.+|
T Consensus 223 ~~~~L~~L~l~~~ 235 (284)
T d2astb2 223 EIPTLKTLQVFGI 235 (284)
T ss_dssp GCTTCCEEECTTS
T ss_pred cCCCCCEEeeeCC
Confidence 9999999999887
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.71 E-value=1.2e-16 Score=163.75 Aligned_cols=176 Identities=22% Similarity=0.340 Sum_probs=100.3
Q ss_pred HHhhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCCCCCChhHHHHHHHhcccccccccccCCCCCcCCC---
Q 004729 394 QAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNISLESV--- 470 (733)
Q Consensus 394 ~~~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~~--- 470 (733)
.++..|++|++|++.+| .+++..+..+ ..+++|++|++++|..+++.++..++..|++|++|++++|..+.....
T Consensus 65 ~l~~~c~~L~~L~L~~~-~l~~~~~~~l-~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~ 142 (284)
T d2astb2 65 GILSQCSKLQNLSLEGL-RLSDPIVNTL-AKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVA 142 (284)
T ss_dssp HHHTTBCCCSEEECTTC-BCCHHHHHHH-TTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHH
T ss_pred HHHHhCCCccccccccc-CCCcHHHHHH-hcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhh
Confidence 34555556666666555 3444444332 345566666666655555555555555555666666555554432211
Q ss_pred ---CCCCccEEEeCCC-CCCchHHHHHhh-CCCCcCEEEEecCCCCccccc----CCCCCcEEEeccccCCccccccccc
Q 004729 471 ---RLPMLTVLQLHSC-EGITSASMAAIS-HSYMLEVLELDNCNLLTSVSL----ELPRLQNIRLVHCRKFADLNLRAMM 541 (733)
Q Consensus 471 ---~l~~L~~L~L~~c-~~l~~~~~~~l~-~~~~L~~L~L~~~~~l~~~~~----~l~~L~~L~L~~c~~l~~l~l~~~~ 541 (733)
.+++|+.|++.+| ..+++..+..+. ++++|++|++++|..+++... .+++|++|.+.+|..+++.++..
T Consensus 143 ~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~-- 220 (284)
T d2astb2 143 VAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLE-- 220 (284)
T ss_dssp HHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGG--
T ss_pred hcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHH--
Confidence 2456777777665 346666665553 577777777777766554322 25667777777776666554433
Q ss_pred cceeecccCcCCceeeeccCccccccccccccHHHHHhcCCCCc
Q 004729 542 LSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQ 585 (733)
Q Consensus 542 L~~l~l~~c~~L~~L~l~~n~L~~l~~~~~~~L~~l~~~~~~L~ 585 (733)
+.+||+|+.|++.++ ..+.++..+...||+|+
T Consensus 221 -----L~~~~~L~~L~l~~~-------~~d~~l~~l~~~lp~L~ 252 (284)
T d2astb2 221 -----LGEIPTLKTLQVFGI-------VPDGTLQLLKEALPHLQ 252 (284)
T ss_dssp -----GGGCTTCCEEECTTS-------SCTTCHHHHHHHSTTSE
T ss_pred -----HhcCCCCCEEeeeCC-------CCHHHHHHHHHhCcccc
Confidence 456677777766554 13455566666666665
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.59 E-value=3.1e-14 Score=151.46 Aligned_cols=96 Identities=19% Similarity=0.260 Sum_probs=64.1
Q ss_pred CCccEEEEcCCCchhHHHHHHhhcCCCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEE
Q 004729 287 PNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLE 366 (733)
Q Consensus 287 ~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~ 366 (733)
.+++.|++.++. +..+ ..+..+++|++|+|++|.+++. ..++++++|++|++++|.+....+ ...+++|+.|+
T Consensus 44 ~~l~~L~l~~~~-I~~l--~gl~~L~nL~~L~Ls~N~l~~l--~~l~~L~~L~~L~L~~n~i~~i~~--l~~l~~L~~L~ 116 (384)
T d2omza2 44 DQVTTLQADRLG-IKSI--DGVEYLNNLTQINFSNNQLTDI--TPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLT 116 (384)
T ss_dssp TTCCEEECCSSC-CCCC--TTGGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEE
T ss_pred CCCCEEECCCCC-CCCc--cccccCCCCCEEeCcCCcCCCC--ccccCCcccccccccccccccccc--ccccccccccc
Confidence 468888887743 3332 3467888899999998888753 247888899999998888764322 45778888888
Q ss_pred eeccccchhc--ccCCCCcEEEEcC
Q 004729 367 ITKCRVMRVS--IRCPQLEHLSLKR 389 (733)
Q Consensus 367 L~~~~~~~i~--~~~~~L~~L~L~~ 389 (733)
+.++....+. .....+..+....
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (384)
T d2omza2 117 LFNNQITDIDPLKNLTNLNRLELSS 141 (384)
T ss_dssp CCSSCCCCCGGGTTCTTCSEEEEEE
T ss_pred ccccccccccccccccccccccccc
Confidence 8877654332 2233444444433
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.51 E-value=4.3e-13 Score=142.45 Aligned_cols=79 Identities=14% Similarity=0.179 Sum_probs=55.7
Q ss_pred cCCCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEEeeccccchhc--ccCCCCcEEEE
Q 004729 310 LLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVS--IRCPQLEHLSL 387 (733)
Q Consensus 310 ~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~i~--~~~~~L~~L~L 387 (733)
.+.+|++|+++++.+++ +..+..+++|++|++++|.+.+.. . ...+++|++|++++|.+..+. ..+++|+.|++
T Consensus 42 ~l~~l~~L~l~~~~I~~--l~gl~~L~nL~~L~Ls~N~l~~l~-~-l~~L~~L~~L~L~~n~i~~i~~l~~l~~L~~L~~ 117 (384)
T d2omza2 42 DLDQVTTLQADRLGIKS--IDGVEYLNNLTQINFSNNQLTDIT-P-LKNLTKLVDILMNNNQIADITPLANLTNLTGLTL 117 (384)
T ss_dssp HHTTCCEEECCSSCCCC--CTTGGGCTTCCEEECCSSCCCCCG-G-GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEEC
T ss_pred HhCCCCEEECCCCCCCC--ccccccCCCCCEEeCcCCcCCCCc-c-ccCCcccccccccccccccccccccccccccccc
Confidence 34679999999988874 234667899999999999877543 2 557888888888888765432 35566666666
Q ss_pred cCCch
Q 004729 388 KRSNM 392 (733)
Q Consensus 388 ~~~~l 392 (733)
.++.+
T Consensus 118 ~~~~~ 122 (384)
T d2omza2 118 FNNQI 122 (384)
T ss_dssp CSSCC
T ss_pred ccccc
Confidence 55433
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.46 E-value=2e-12 Score=140.20 Aligned_cols=377 Identities=20% Similarity=0.232 Sum_probs=244.2
Q ss_pred eeEEeeCCCCCCHHHHHHHHhhCCCccEEEEcCCCchhHH----HHHHhhcCCCCCEEEecCccCChHHHHhcc-----C
Q 004729 264 WRCLNFENRKISVEQFEDVCQRYPNATEVNIYGAPAIHLL----VMKAVSLLRNLEALTLGRGQLGDAFFHALA-----D 334 (733)
Q Consensus 264 w~~l~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~----~~~~l~~l~~L~~L~Ls~~~i~~~~~~~L~-----~ 334 (733)
.+.++++...++...+..++...++++.|++.+|. +.+. +...+..+++|++|+|++|.+++.....+. .
T Consensus 4 l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~-i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~ 82 (460)
T d1z7xw1 4 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP 82 (460)
T ss_dssp EEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred CCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCC-CCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence 35788888999999999999999999999999974 4433 334567899999999999999876554443 2
Q ss_pred CCCCcEEEEecCcCCcc----cccccccCCCccEEEeeccccchh---------cccCCCCcEEEEcCCc--------hH
Q 004729 335 CSMLKSLNVNDATLGNG----VQEIPINHDQLRRLEITKCRVMRV---------SIRCPQLEHLSLKRSN--------MA 393 (733)
Q Consensus 335 ~~~L~~L~L~~~~l~~~----~~~~~~~~~~L~~L~L~~~~~~~i---------~~~~~~L~~L~L~~~~--------l~ 393 (733)
.++|++|+|++|.+++. +......+++|++|++.+|.+... .........+...... +.
T Consensus 83 ~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (460)
T d1z7xw1 83 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA 162 (460)
T ss_dssp TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred CCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhcccc
Confidence 46899999999988753 334456789999999999875421 1122223344433321 12
Q ss_pred HHhhCCCCccEEEEecCCCCChHHHHHH----HhcCCCCcEEeccCCCCCChhHH---HHHHHhcccccccccccCCCCC
Q 004729 394 QAVLNCPLLHLLDIASCHKLSDAAIRLA----ATSCPQLESLDMSNCSCVSDESL---REIALSCANLRILNSSYCPNIS 466 (733)
Q Consensus 394 ~~~~~~~~L~~L~L~~c~~l~~~~l~~l----~~~~~~L~~L~L~~~~~l~~~~l---~~l~~~~~~L~~L~L~~~~~l~ 466 (733)
..+...+.++.+.++.+ .+.+..+... ...-.....+.+..+. +..... .......+.++.+.+.++....
T Consensus 163 ~~l~~~~~~~~~~ls~~-~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~-~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~ 240 (460)
T d1z7xw1 163 SVLRAKPDFKELTVSNN-DINEAGVRVLCQGLKDSPCQLEALKLESCG-VTSDNCRDLCGIVASKASLRELALGSNKLGD 240 (460)
T ss_dssp HHHHHCTTCCEEECCSS-BCHHHHHHHHHHHHHHSCCCCCEEECTTSC-CBTTHHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred ccccccccccccccccc-cccccccccccccccccccccccccccccc-ccchhhhcccccccccccccccchhhccccc
Confidence 33556788899998885 3444433322 2223466778888776 333333 2333466788888887764211
Q ss_pred --------cCCCCCCCccEEEeCCCCCCchHHH----HHhhCCCCcCEEEEecCCCCccc---------ccCCCCCcEEE
Q 004729 467 --------LESVRLPMLTVLQLHSCEGITSASM----AAISHSYMLEVLELDNCNLLTSV---------SLELPRLQNIR 525 (733)
Q Consensus 467 --------~~~~~l~~L~~L~L~~c~~l~~~~~----~~l~~~~~L~~L~L~~~~~l~~~---------~~~l~~L~~L~ 525 (733)
......+.|+.+++.+|. +..... ..+...+.++.++++++. +.+. ....+.|+.+.
T Consensus 241 ~~~~~~~~~~~~~~~~l~~l~l~~n~-i~~~~~~~~~~~l~~~~~l~~l~l~~n~-i~~~~~~~l~~~l~~~~~~L~~l~ 318 (460)
T d1z7xw1 241 VGMAELCPGLLHPSSRLRTLWIWECG-ITAKGCGDLCRVLRAKESLKELSLAGNE-LGDEGARLLCETLLEPGCQLESLW 318 (460)
T ss_dssp HHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHHHHHCTTCCEEECTTCC-CHHHHHHHHHHHHTSTTCCCCEEE
T ss_pred cccchhhccccccccccccccccccc-cccccccccccccccccccccccccccc-ccccccchhhcccccccccccccc
Confidence 112246789999999864 444332 234567889999998875 3321 12245788888
Q ss_pred eccccCCccccccccccceeecccCcCCceeeeccCccccccccccccHHHHH----hcCCCCcEEeecCCCCCChhhhh
Q 004729 526 LVHCRKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLA----LQCQCLQEVDLTDCESLTNSVCE 601 (733)
Q Consensus 526 L~~c~~l~~l~l~~~~L~~l~l~~c~~L~~L~l~~n~L~~l~~~~~~~L~~l~----~~~~~L~~L~Ls~C~~lt~~~~~ 601 (733)
+.++. ++....... .. .+..+++|++|++++|.+.. +++..++ ...+.|+.|+|++| .+++....
T Consensus 319 l~~~~-l~~~~~~~l--~~-~~~~~~~L~~L~Ls~N~i~~------~g~~~l~~~l~~~~~~L~~L~Ls~n-~i~~~~~~ 387 (460)
T d1z7xw1 319 VKSCS-FTAACCSHF--SS-VLAQNRFLLELQISNNRLED------AGVRELCQGLGQPGSVLRVLWLADC-DVSDSSCS 387 (460)
T ss_dssp CTTSC-CBGGGHHHH--HH-HHHHCSSCCEEECCSSBCHH------HHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHH
T ss_pred ccccc-hhhhhhhhc--cc-ccccccchhhhheeeecccC------cccchhhhhhhcccCCCCEEECCCC-CCChHHHH
Confidence 87763 333322211 00 24567889999999998753 3333333 35678999999997 79887655
Q ss_pred hhc-CCCCCCCccEEEeecCCCCccccc---------cCCCccEEecccccc-------ccccccccccccEE
Q 004729 602 VFS-DGGGCPMLKSLVLDNCEGLTVVRF---------CSTSLVSLSLVGCRA-------ITALELKCPILEKV 657 (733)
Q Consensus 602 ~~~-~~~~l~~L~~L~L~~c~~L~~~~~---------~~~sL~~L~L~~c~~-------L~~l~~~~p~L~~L 657 (733)
.+. .+..+++|++|+|+++ .+++.+. ....|+.|.+.++.- +..+...-|+|+.|
T Consensus 388 ~l~~~l~~~~~L~~L~Ls~N-~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~~~~~l~~~ 459 (460)
T d1z7xw1 388 SLAATLLANHSLRELDLSNN-CLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 459 (460)
T ss_dssp HHHHHHHHCCCCCEEECCSS-SCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHHHHHHHHHCTTSEEE
T ss_pred HHHHHHhcCCCCCEEECCCC-cCCHHHHHHHHHHHHhCCCccCEEECCCCCCCHHHHHHHHHHHHhCCCCEEe
Confidence 443 1245789999999987 5665321 345799999988542 22233345666654
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.45 E-value=2.3e-12 Score=134.72 Aligned_cols=71 Identities=21% Similarity=0.314 Sum_probs=32.2
Q ss_pred CCCcEEEEecCcCCcccccccccCCCccEEEeeccccchhcccCCCCcEEEEcCCchHHH--hhCCCCccEEEEecC
Q 004729 336 SMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIRCPQLEHLSLKRSNMAQA--VLNCPLLHLLDIASC 410 (733)
Q Consensus 336 ~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~i~~~~~~L~~L~L~~~~l~~~--~~~~~~L~~L~L~~c 410 (733)
++|++|++++|.+.. +...+.+|++|++.++.+..+..-.+.|++|+++++.+..+ ...+++|+.|++.++
T Consensus 58 ~~L~~L~Ls~N~l~~----lp~~~~~L~~L~l~~n~l~~l~~lp~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~~ 130 (353)
T d1jl5a_ 58 PHLESLVASCNSLTE----LPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNN 130 (353)
T ss_dssp TTCSEEECCSSCCSS----CCCCCTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSS
T ss_pred CCCCEEECCCCCCcc----cccchhhhhhhhhhhcccchhhhhccccccccccccccccccchhhhccceeeccccc
Confidence 455555555554431 11223455555555555444443333455555554443322 233455555555543
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.41 E-value=2.9e-11 Score=126.10 Aligned_cols=93 Identities=18% Similarity=0.190 Sum_probs=59.6
Q ss_pred CCcEEEEecCcCCcccccccccCCCccEEEeeccccchhcccCCCCcEEEEcCCchHHHhhCCCCccEEEEecCCCCChH
Q 004729 337 MLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIRCPQLEHLSLKRSNMAQAVLNCPLLHLLDIASCHKLSDA 416 (733)
Q Consensus 337 ~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~i~~~~~~L~~L~L~~~~l~~~~~~~~~L~~L~L~~c~~l~~~ 416 (733)
+|++|+|+++.++. ++ ...++|++|++++|.+..++....+|+.|++.++.+..+-.-.+.|++|+++++ .+...
T Consensus 39 ~l~~LdLs~~~L~~-lp---~~~~~L~~L~Ls~N~l~~lp~~~~~L~~L~l~~n~l~~l~~lp~~L~~L~L~~n-~l~~l 113 (353)
T d1jl5a_ 39 QAHELELNNLGLSS-LP---ELPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNN-QLEKL 113 (353)
T ss_dssp TCSEEECTTSCCSC-CC---SCCTTCSEEECCSSCCSSCCCCCTTCCEEECCSSCCSCCCSCCTTCCEEECCSS-CCSSC
T ss_pred CCCEEEeCCCCCCC-CC---CCCCCCCEEECCCCCCcccccchhhhhhhhhhhcccchhhhhcccccccccccc-ccccc
Confidence 45555555554432 22 245789999999999888888888899998888776654433445777777764 34332
Q ss_pred HHHHHHhcCCCCcEEeccCCC
Q 004729 417 AIRLAATSCPQLESLDMSNCS 437 (733)
Q Consensus 417 ~l~~l~~~~~~L~~L~L~~~~ 437 (733)
. . ...+++|+.|++.++.
T Consensus 114 p--~-~~~l~~L~~L~l~~~~ 131 (353)
T d1jl5a_ 114 P--E-LQNSSFLKIIDVDNNS 131 (353)
T ss_dssp C--C-CTTCTTCCEEECCSSC
T ss_pred c--c-hhhhccceeecccccc
Confidence 1 1 2345666666666554
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.39 E-value=3.5e-12 Score=138.16 Aligned_cols=327 Identities=19% Similarity=0.239 Sum_probs=175.6
Q ss_pred CCccEEEEcCCCchhHHH-HHHhhcCCCCCEEEecCccCChHHH----HhccCCCCCcEEEEecCcCCcc-cccc----c
Q 004729 287 PNATEVNIYGAPAIHLLV-MKAVSLLRNLEALTLGRGQLGDAFF----HALADCSMLKSLNVNDATLGNG-VQEI----P 356 (733)
Q Consensus 287 ~~L~~L~L~~~~~~~~~~-~~~l~~l~~L~~L~Ls~~~i~~~~~----~~L~~~~~L~~L~L~~~~l~~~-~~~~----~ 356 (733)
.+|+.|++++ ..+.+.. ...+..+++++.|+|++|.+++... ..+..+++|++|+|++|.+++. +..+ .
T Consensus 2 ~~l~~ld~~~-~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~ 80 (460)
T d1z7xw1 2 LDIQSLDIQC-EELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ 80 (460)
T ss_dssp EEEEEEEEES-CCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred CCCCEEEeeC-CcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHh
Confidence 3688999977 4555543 4456688999999999999986544 4456899999999999987642 1122 2
Q ss_pred ccCCCccEEEeeccccch--------hcccCCCCcEEEEcCCchHHH-----h----hCCCCccEEEEecCCCCChH---
Q 004729 357 INHDQLRRLEITKCRVMR--------VSIRCPQLEHLSLKRSNMAQA-----V----LNCPLLHLLDIASCHKLSDA--- 416 (733)
Q Consensus 357 ~~~~~L~~L~L~~~~~~~--------i~~~~~~L~~L~L~~~~l~~~-----~----~~~~~L~~L~L~~c~~l~~~--- 416 (733)
....+|++|++++|.+.. ....+++|++|++++|.+... . ........+.... ..+...
T Consensus 81 ~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~-~~~~~~~~~ 159 (460)
T d1z7xw1 81 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEY-CSLSAASCE 159 (460)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTT-SCCBGGGHH
T ss_pred cCCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccc-cccchhhhc
Confidence 234579999999987642 234678888888888765421 1 1222333444433 222222
Q ss_pred HHHHHHhcCCCCcEEeccCCCCCChhHHHHHHHh----cccccccccccCCCCCcC-------CCCCCCccEEEeCCCCC
Q 004729 417 AIRLAATSCPQLESLDMSNCSCVSDESLREIALS----CANLRILNSSYCPNISLE-------SVRLPMLTVLQLHSCEG 485 (733)
Q Consensus 417 ~l~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~----~~~L~~L~L~~~~~l~~~-------~~~l~~L~~L~L~~c~~ 485 (733)
.+...+...+.++.+.++.+. ..+.++...... ......+.+..+...... ....+.++.+.+.++ .
T Consensus 160 ~~~~~l~~~~~~~~~~ls~~~-~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n-~ 237 (460)
T d1z7xw1 160 PLASVLRAKPDFKELTVSNND-INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSN-K 237 (460)
T ss_dssp HHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSS-B
T ss_pred ccccccccccccccccccccc-cccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhc-c
Confidence 223344556788888888776 444444433322 123444555544321111 113566777777763 3
Q ss_pred CchHHHH-----HhhCCCCcCEEEEecCCCCcccc-------cCCCCCcEEEeccccCCccccccccccceeecccCcCC
Q 004729 486 ITSASMA-----AISHSYMLEVLELDNCNLLTSVS-------LELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAAL 553 (733)
Q Consensus 486 l~~~~~~-----~l~~~~~L~~L~L~~~~~l~~~~-------~~l~~L~~L~L~~c~~l~~l~l~~~~L~~l~l~~c~~L 553 (733)
+.+.... .......++.|++++|....... ...+.++.+.+.+.. +.+.++... ..........|
T Consensus 238 ~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~-i~~~~~~~l--~~~l~~~~~~L 314 (460)
T d1z7xw1 238 LGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNE-LGDEGARLL--CETLLEPGCQL 314 (460)
T ss_dssp CHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCC-CHHHHHHHH--HHHHTSTTCCC
T ss_pred ccccccchhhccccccccccccccccccccccccccccccccccccccccccccccc-ccccccchh--hcccccccccc
Confidence 3333221 12235677777777764322111 114555555554431 222111110 00001223456
Q ss_pred ceeeeccCccccccccccccHHHHHhcCCCCcEEeecCCCCCChhhhhhhcC--CCCCCCccEEEeecCCCCcc
Q 004729 554 HRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSD--GGGCPMLKSLVLDNCEGLTV 625 (733)
Q Consensus 554 ~~L~l~~n~L~~l~~~~~~~L~~l~~~~~~L~~L~Ls~C~~lt~~~~~~~~~--~~~l~~L~~L~L~~c~~L~~ 625 (733)
+.+++.++.+... ....+..+...+++|++|+|+++ .+++.+...+.. ....+.|++|+|++| .+++
T Consensus 315 ~~l~l~~~~l~~~---~~~~l~~~~~~~~~L~~L~Ls~N-~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n-~i~~ 383 (460)
T d1z7xw1 315 ESLWVKSCSFTAA---CCSHFSSVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADC-DVSD 383 (460)
T ss_dssp CEEECTTSCCBGG---GHHHHHHHHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCH
T ss_pred ccccccccchhhh---hhhhcccccccccchhhhheeee-cccCcccchhhhhhhcccCCCCEEECCCC-CCCh
Confidence 6666666655432 12233334445667777777763 566554333321 123455666666666 3544
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.35 E-value=4.7e-12 Score=130.22 Aligned_cols=174 Identities=14% Similarity=0.104 Sum_probs=86.8
Q ss_pred CCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEEeeccccchhccc-CCCCcEEEEcCC
Q 004729 312 RNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIR-CPQLEHLSLKRS 390 (733)
Q Consensus 312 ~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~i~~~-~~~L~~L~L~~~ 390 (733)
+++++|+|++|.++......+..+++|++|+++++.+....+..+..+++|++|++.+|.+..++.. .+.++.|.+.++
T Consensus 31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~~~n 110 (305)
T d1xkua_ 31 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHEN 110 (305)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEECCSS
T ss_pred CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccCcCccchhhhhhhhhcccc
Confidence 4677777777776643334566677777777777766654455555667777777777665544422 233444444333
Q ss_pred chHHHhhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCCCCCChhHHHHHHHhcccccccccccCCCCCcCCC
Q 004729 391 NMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNISLESV 470 (733)
Q Consensus 391 ~l~~~~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~~ 470 (733)
.+ .... ...+.....+..+.+..+..............+++|+.+.+.++........
T Consensus 111 ~l---------------------~~l~-~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~ 168 (305)
T d1xkua_ 111 EI---------------------TKVR-KSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQG 168 (305)
T ss_dssp CC---------------------CBBC-HHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSS
T ss_pred ch---------------------hhhh-hhhhhccccccccccccccccccCCCccccccccccCccccccCCccccCcc
Confidence 22 2111 1123334455555555443211111111122344555555555442222222
Q ss_pred CCCCccEEEeCCCCCCchHHHHHhhCCCCcCEEEEecC
Q 004729 471 RLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNC 508 (733)
Q Consensus 471 ~l~~L~~L~L~~c~~l~~~~~~~l~~~~~L~~L~L~~~ 508 (733)
.+++|++|++.++. ........+..++.++.|++++|
T Consensus 169 ~~~~L~~L~l~~n~-~~~~~~~~~~~~~~l~~L~~s~n 205 (305)
T d1xkua_ 169 LPPSLTELHLDGNK-ITKVDAASLKGLNNLAKLGLSFN 205 (305)
T ss_dssp CCTTCSEEECTTSC-CCEECTGGGTTCTTCCEEECCSS
T ss_pred cCCccCEEECCCCc-CCCCChhHhhccccccccccccc
Confidence 34566666666532 33333334455556666665554
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.15 E-value=1.5e-10 Score=118.58 Aligned_cols=74 Identities=22% Similarity=0.237 Sum_probs=36.0
Q ss_pred ccEEEeeccccchhcccC-CCCcEEEEcCCchHHH----hhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCC
Q 004729 362 LRRLEITKCRVMRVSIRC-PQLEHLSLKRSNMAQA----VLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNC 436 (733)
Q Consensus 362 L~~L~L~~~~~~~i~~~~-~~L~~L~L~~~~l~~~----~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~ 436 (733)
++.++-++..+..++..+ +++++|+|++|.+..+ +..+++|++|++.++. +.... +..+.++++|+.|+++++
T Consensus 12 ~~~~~C~~~~L~~lP~~l~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~-~~~i~-~~~f~~l~~L~~L~l~~n 89 (305)
T d1xkua_ 12 LRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNK-ISKIS-PGAFAPLVKLERLYLSKN 89 (305)
T ss_dssp TTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC-CCCBC-TTTTTTCTTCCEEECCSS
T ss_pred CCEEEecCCCCCccCCCCCCCCCEEECcCCcCCCcChhHhhcccccccccccccc-ccccc-hhhhhCCCccCEecccCC
Confidence 445555554555555443 4566666666655422 3455556666665542 22110 122334555555555554
Q ss_pred C
Q 004729 437 S 437 (733)
Q Consensus 437 ~ 437 (733)
.
T Consensus 90 ~ 90 (305)
T d1xkua_ 90 Q 90 (305)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.10 E-value=2.3e-11 Score=125.39 Aligned_cols=83 Identities=14% Similarity=0.193 Sum_probs=42.2
Q ss_pred CccEEEEcCCCchhH-HHHHHhhcCCCCCEEEecC-ccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEE
Q 004729 288 NATEVNIYGAPAIHL-LVMKAVSLLRNLEALTLGR-GQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRL 365 (733)
Q Consensus 288 ~L~~L~L~~~~~~~~-~~~~~l~~l~~L~~L~Ls~-~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L 365 (733)
+|+.|++.+..-... .++..++.+++|++|+|++ |.+...+|..++++++|++|+|++|.+....+.....+..|+.+
T Consensus 51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l 130 (313)
T d1ogqa_ 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhccc
Confidence 466666665321111 1233455566666666654 44444445555556666666666655554444444445555555
Q ss_pred Eeecc
Q 004729 366 EITKC 370 (733)
Q Consensus 366 ~L~~~ 370 (733)
++..|
T Consensus 131 ~l~~N 135 (313)
T d1ogqa_ 131 DFSYN 135 (313)
T ss_dssp ECCSS
T ss_pred ccccc
Confidence 55444
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.09 E-value=3.9e-12 Score=131.41 Aligned_cols=236 Identities=17% Similarity=0.136 Sum_probs=160.8
Q ss_pred CCCCEEEecCccCCh--HHHHhccCCCCCcEEEEec-CcCCcccccccccCCCccEEEeeccccchh----cccCCCCcE
Q 004729 312 RNLEALTLGRGQLGD--AFFHALADCSMLKSLNVND-ATLGNGVQEIPINHDQLRRLEITKCRVMRV----SIRCPQLEH 384 (733)
Q Consensus 312 ~~L~~L~Ls~~~i~~--~~~~~L~~~~~L~~L~L~~-~~l~~~~~~~~~~~~~L~~L~L~~~~~~~i----~~~~~~L~~ 384 (733)
.+++.|+|+++.+.. .++..++++++|++|+|++ +.+...++..+..+++|++|++++|.+..+ ...+++|+.
T Consensus 50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~ 129 (313)
T d1ogqa_ 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred EEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcc
Confidence 368899999987765 4567889999999999986 667767777788899999999999987643 456889999
Q ss_pred EEEcCCchH----HHhhCCCCccEEEEecCCCCChHHHHHHHhcCCCC-cEEeccCCCCCChhHHHHHHHhccccccccc
Q 004729 385 LSLKRSNMA----QAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQL-ESLDMSNCSCVSDESLREIALSCANLRILNS 459 (733)
Q Consensus 385 L~L~~~~l~----~~~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L-~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L 459 (733)
+++.++.+. ..+..+++|+.++++++. +... ++..+..+..+ +.+.++++. ++......+ ....+..+.+
T Consensus 130 l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~-l~~~-ip~~~~~l~~l~~~l~~~~n~-l~~~~~~~~--~~l~~~~l~l 204 (313)
T d1ogqa_ 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNR-ISGA-IPDSYGSFSKLFTSMTISRNR-LTGKIPPTF--ANLNLAFVDL 204 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSC-CEEE-CCGGGGCCCTTCCEEECCSSE-EEEECCGGG--GGCCCSEEEC
T ss_pred cccccccccccCchhhccCcccceeeccccc-cccc-ccccccccccccccccccccc-ccccccccc--cccccccccc
Confidence 999887543 457789999999999853 3321 22233445554 788887765 332222211 1123334555
Q ss_pred ccCC---CCCcCCCCCCCccEEEeCCCCCCchHHHHHhhCCCCcCEEEEecCCCCcccccC---CCCCcEEEeccccCCc
Q 004729 460 SYCP---NISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLE---LPRLQNIRLVHCRKFA 533 (733)
Q Consensus 460 ~~~~---~l~~~~~~l~~L~~L~L~~c~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~---l~~L~~L~L~~c~~l~ 533 (733)
..+. .++.....+++|+.+++.++. +... +..++.+++|+.|++++|.....+|.. +++|+.|++++.. ++
T Consensus 205 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~-l~~~-~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~-l~ 281 (313)
T d1ogqa_ 205 SRNMLEGDASVLFGSDKNTQKIHLAKNS-LAFD-LGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNN-LC 281 (313)
T ss_dssp CSSEEEECCGGGCCTTSCCSEEECCSSE-ECCB-GGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSE-EE
T ss_pred cccccccccccccccccccccccccccc-cccc-ccccccccccccccCccCeecccCChHHhCCCCCCEEECcCCc-cc
Confidence 5444 233444578899999998854 3322 235677899999999998655466653 5778888876642 22
Q ss_pred cccccccccceeecccCcCCceeeeccCcc
Q 004729 534 DLNLRAMMLSSIMVSNCAALHRINITSNSL 563 (733)
Q Consensus 534 ~l~l~~~~L~~l~l~~c~~L~~L~l~~n~L 563 (733)
+. +. .+.++.+|+.+++.+|+.
T Consensus 282 -----g~-iP--~~~~L~~L~~l~l~~N~~ 303 (313)
T d1ogqa_ 282 -----GE-IP--QGGNLQRFDVSAYANNKC 303 (313)
T ss_dssp -----EE-CC--CSTTGGGSCGGGTCSSSE
T ss_pred -----cc-CC--CcccCCCCCHHHhCCCcc
Confidence 10 11 246678888888988873
|
| >d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: F-box domain superfamily: F-box domain family: F-box domain domain: Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.07 E-value=2.2e-11 Score=83.76 Aligned_cols=41 Identities=32% Similarity=0.632 Sum_probs=38.8
Q ss_pred ccCCCHHHHHHHHhcCChhhHHHHHHHHHHHHHhhcCCCCe
Q 004729 224 RMDLTDDLLHMVFSFLDYVDLCRAAIVCRQWRAASAHEDFW 264 (733)
Q Consensus 224 ~~~LP~ElL~~If~~L~~~dl~~~~lVck~W~~l~~~~~lw 264 (733)
|..||+|++.+||+||+.+|++++++|||+|+.++.++.+|
T Consensus 1 f~~LP~eil~~If~~L~~~dl~~~~~Vcr~w~~l~~~~~lW 41 (41)
T d1fs1a1 1 WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLW 41 (41)
T ss_dssp CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGGC
T ss_pred CCcCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccC
Confidence 45899999999999999999999999999999999998887
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.07 E-value=8.2e-10 Score=115.18 Aligned_cols=245 Identities=19% Similarity=0.238 Sum_probs=138.4
Q ss_pred HHhhcCCCCCEEEecCccCChHHHHhc----cCCCCCcEEEEecCcCCcccccccccCCCccEEEeeccccchhcccCCC
Q 004729 306 KAVSLLRNLEALTLGRGQLGDAFFHAL----ADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIRCPQ 381 (733)
Q Consensus 306 ~~l~~l~~L~~L~Ls~~~i~~~~~~~L----~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~i~~~~~~ 381 (733)
..+.....|++|+|++|.+++.....+ ...++|+.|++.++...........
T Consensus 25 ~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~------------------------ 80 (344)
T d2ca6a1 25 AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPE------------------------ 80 (344)
T ss_dssp HHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHH------------------------
T ss_pred HHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccch------------------------
Confidence 445677888888888888877655544 3456777777665543211100000
Q ss_pred CcEEEEcCCchHHHhhCCCCccEEEEecCCCCChH---HHHHHHhcCCCCcEEeccCCCCCChhHHHHHHHhcccccccc
Q 004729 382 LEHLSLKRSNMAQAVLNCPLLHLLDIASCHKLSDA---AIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILN 458 (733)
Q Consensus 382 L~~L~L~~~~l~~~~~~~~~L~~L~L~~c~~l~~~---~l~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~ 458 (733)
....+...+..+++|++|++++| .+++. .+...+..+++|++|+++++. +++.+...++..+ ..+.
T Consensus 81 ------~~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~l~~n~-l~~~~~~~l~~~l---~~~~ 149 (344)
T d2ca6a1 81 ------ALRLLLQALLKCPKLHTVRLSDN-AFGPTAQEPLIDFLSKHTPLEHLYLHNNG-LGPQAGAKIARAL---QELA 149 (344)
T ss_dssp ------HHHHHHHHHTTCTTCCEEECCSC-CCCTTTHHHHHHHHHHCTTCCEEECCSSC-CHHHHHHHHHHHH---HHHH
T ss_pred ------HHHHHHHHHhhCCCccccccccc-ccccccccchhhhhcccccchheeccccc-ccccccccccccc---cccc
Confidence 00122344556788888888875 34443 344556678899999998886 7766666554332 2221
Q ss_pred cccCCCCCcCCCCCCCccEEEeCCCCCCchHHHHH----hhCCCCcCEEEEecCCCCcccccCCCCCcEEEeccccCCcc
Q 004729 459 SSYCPNISLESVRLPMLTVLQLHSCEGITSASMAA----ISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFAD 534 (733)
Q Consensus 459 L~~~~~l~~~~~~l~~L~~L~L~~c~~l~~~~~~~----l~~~~~L~~L~L~~~~~l~~~~~~l~~L~~L~L~~c~~l~~ 534 (733)
... .....+.|+.|.+.+ +.+++..... +...+.|++|++++|. +...... .
T Consensus 150 ~~~------~~~~~~~L~~l~l~~-n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~g~~----------------~ 205 (344)
T d2ca6a1 150 VNK------KAKNAPPLRSIICGR-NRLENGSMKEWAKTFQSHRLLHTVKMVQNG-IRPEGIE----------------H 205 (344)
T ss_dssp HHH------HHHTCCCCCEEECCS-SCCTGGGHHHHHHHHHHCTTCCEEECCSSC-CCHHHHH----------------H
T ss_pred ccc------ccccCcccceeeccc-ccccccccccccchhhhhhhhccccccccc-ccccccc----------------c
Confidence 111 111345788888877 4566655444 3456788888887764 2211000 0
Q ss_pred ccccccccceeecccCcCCceeeeccCccccccccccccHHHHHhcCCCCcEEeecCCCCCChhhhhhhcC---CCCCCC
Q 004729 535 LNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSD---GGGCPM 611 (733)
Q Consensus 535 l~l~~~~L~~l~l~~c~~L~~L~l~~n~L~~l~~~~~~~L~~l~~~~~~L~~L~Ls~C~~lt~~~~~~~~~---~~~l~~ 611 (733)
. +.. .+..+++|+.|++.+|.++.. +...+......+++|++|+|++| .+++.....+.. ....+.
T Consensus 206 ~-l~~------~l~~~~~L~~L~Ls~N~i~~~---g~~~L~~~l~~~~~L~~L~Ls~n-~i~~~g~~~l~~~l~~~~~~~ 274 (344)
T d2ca6a1 206 L-LLE------GLAYCQELKVLDLQDNTFTHL---GSSALAIALKSWPNLRELGLNDC-LLSARGAAAVVDAFSKLENIG 274 (344)
T ss_dssp H-HHT------TGGGCTTCCEEECCSSCCHHH---HHHHHHHHGGGCTTCCEEECTTC-CCCHHHHHHHHHHHHTCSSCC
T ss_pred c-hhh------hhcchhhhccccccccccccc---ccccccccccccccchhhhhhcC-ccCchhhHHHHHHhhhccCCC
Confidence 0 000 145667777777777765432 22333344456788888888885 577665444421 122356
Q ss_pred ccEEEeecC
Q 004729 612 LKSLVLDNC 620 (733)
Q Consensus 612 L~~L~L~~c 620 (733)
|++|+|+++
T Consensus 275 L~~L~ls~N 283 (344)
T d2ca6a1 275 LQTLRLQYN 283 (344)
T ss_dssp CCEEECCSS
T ss_pred CCEEECCCC
Confidence 777777665
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.04 E-value=1.9e-09 Score=112.28 Aligned_cols=224 Identities=19% Similarity=0.269 Sum_probs=120.4
Q ss_pred HHhhCCCccEEEEcCCCchhHHHHH----HhhcCCCCCEEEecCccCC----------hHHHHhccCCCCCcEEEEecCc
Q 004729 282 VCQRYPNATEVNIYGAPAIHLLVMK----AVSLLRNLEALTLGRGQLG----------DAFFHALADCSMLKSLNVNDAT 347 (733)
Q Consensus 282 ~~~~~~~L~~L~L~~~~~~~~~~~~----~l~~l~~L~~L~Ls~~~i~----------~~~~~~L~~~~~L~~L~L~~~~ 347 (733)
.+.....++.|++++. .+...... .+...++|+.|+++++... ..+...+..+++|+.|+|++|.
T Consensus 26 ~L~~~~~l~~L~Ls~n-~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~ 104 (344)
T d2ca6a1 26 VLLEDDSVKEIVLSGN-TIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA 104 (344)
T ss_dssp HHHHCSCCCEEECTTS-EECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC
T ss_pred HHhhCCCCCEEECcCC-cCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccc
Confidence 3445666777777763 34333222 2345677777777654322 1233445567777777777776
Q ss_pred CCcc----cccccccCCCccEEEeeccccch-----------------hcccCCCCcEEEEcCCchH--------HHhhC
Q 004729 348 LGNG----VQEIPINHDQLRRLEITKCRVMR-----------------VSIRCPQLEHLSLKRSNMA--------QAVLN 398 (733)
Q Consensus 348 l~~~----~~~~~~~~~~L~~L~L~~~~~~~-----------------i~~~~~~L~~L~L~~~~l~--------~~~~~ 398 (733)
++.. +......+++|++|++.+|.+.. .....+.|+.+.++++.+. ..+..
T Consensus 105 i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~ 184 (344)
T d2ca6a1 105 FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS 184 (344)
T ss_dssp CCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHH
T ss_pred cccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhh
Confidence 5542 22333456677777777665421 1124566677766655322 23455
Q ss_pred CCCccEEEEecCCCCChHHHHH----HHhcCCCCcEEeccCCCCCChhHHHHHHH---hcccccccccccCCCCCc----
Q 004729 399 CPLLHLLDIASCHKLSDAAIRL----AATSCPQLESLDMSNCSCVSDESLREIAL---SCANLRILNSSYCPNISL---- 467 (733)
Q Consensus 399 ~~~L~~L~L~~c~~l~~~~l~~----l~~~~~~L~~L~L~~~~~l~~~~l~~l~~---~~~~L~~L~L~~~~~l~~---- 467 (733)
+++|++|++.+| .+.+.++.. .+..+++|+.|+++++. +++.+...+.. .+++|++|++++|.--..
T Consensus 185 ~~~L~~L~L~~n-~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~-i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~ 262 (344)
T d2ca6a1 185 HRLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDNT-FTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAA 262 (344)
T ss_dssp CTTCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSSC-CHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHH
T ss_pred hhhhcccccccc-cccccccccchhhhhcchhhhccccccccc-ccccccccccccccccccchhhhhhcCccCchhhHH
Confidence 677777777775 466554322 23456777777777665 66655544432 444555555555541100
Q ss_pred -----CCCCCCCccEEEeCCCCCCchHHHHHhh-----CCCCcCEEEEecCC
Q 004729 468 -----ESVRLPMLTVLQLHSCEGITSASMAAIS-----HSYMLEVLELDNCN 509 (733)
Q Consensus 468 -----~~~~l~~L~~L~L~~c~~l~~~~~~~l~-----~~~~L~~L~L~~~~ 509 (733)
.....+.|++|++++ +.+++.++..+. +.++|+.|+|++|.
T Consensus 263 l~~~l~~~~~~~L~~L~ls~-N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~ 313 (344)
T d2ca6a1 263 VVDAFSKLENIGLQTLRLQY-NEIELDAVRTLKTVIDEKMPDLLFLELNGNR 313 (344)
T ss_dssp HHHHHHTCSSCCCCEEECCS-SCCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred HHHHhhhccCCCCCEEECCC-CcCChHHHHHHHHHHHccCCCCCEEECCCCc
Confidence 001234566666666 345555443332 24556666665553
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.01 E-value=6.6e-10 Score=108.63 Aligned_cols=181 Identities=17% Similarity=0.146 Sum_probs=78.5
Q ss_pred CCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEEeeccccchhcccCCCCcEEEEcCCc
Q 004729 312 RNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIRCPQLEHLSLKRSN 391 (733)
Q Consensus 312 ~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~i~~~~~~L~~L~L~~~~ 391 (733)
.+|+.|++.++.++. + ..+..+++|++|++++|.+....+ ...+++|+.+++.+|.+..+.
T Consensus 41 ~~L~~L~l~~~~i~~-l-~~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~~i~--------------- 101 (227)
T d1h6ua2 41 DGITTLSAFGTGVTT-I-EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVS--------------- 101 (227)
T ss_dssp HTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCCG---------------
T ss_pred CCcCEEECCCCCCCc-c-hhHhcCCCCcEeecCCceeecccc--ccccccccccccccccccccc---------------
Confidence 355666666655542 1 234556666666666655443221 344555555555554433221
Q ss_pred hHHHhhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCCCCCChhHHHHHHHhcccccccccccCCCCC-cCCC
Q 004729 392 MAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNIS-LESV 470 (733)
Q Consensus 392 l~~~~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~-~~~~ 470 (733)
.+..+++|+.+.+.+|....... +...+.++.+.+..+....... ...+++|+.|.+.++.... ....
T Consensus 102 ---~l~~l~~L~~l~l~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~----~~~~~~L~~L~l~~n~~~~~~~l~ 170 (227)
T d1h6ua2 102 ---AIAGLQSIKTLDLTSTQITDVTP----LAGLSNLQVLYLDLNQITNISP----LAGLTNLQYLSIGNAQVSDLTPLA 170 (227)
T ss_dssp ---GGTTCTTCCEEECTTSCCCCCGG----GTTCTTCCEEECCSSCCCCCGG----GGGCTTCCEEECCSSCCCCCGGGT
T ss_pred ---cccccccccccccccccccccch----hccccchhhhhchhhhhchhhh----hccccccccccccccccccchhhc
Confidence 02223333344333332111111 1223344444443333111111 1133444444444433211 1122
Q ss_pred CCCCccEEEeCCCCCCchHHHHHhhCCCCcCEEEEecCCCCccccc--CCCCCcEEEe
Q 004729 471 RLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSL--ELPRLQNIRL 526 (733)
Q Consensus 471 ~l~~L~~L~L~~c~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~--~l~~L~~L~L 526 (733)
.+++|++|+++++ .+++. ..++.+++|++|+|++| .+++++. .+++|+.|.+
T Consensus 171 ~l~~L~~L~Ls~n-~l~~l--~~l~~l~~L~~L~Ls~N-~lt~i~~l~~l~~L~~L~l 224 (227)
T d1h6ua2 171 NLSKLTTLKADDN-KISDI--SPLASLPNLIEVHLKNN-QISDVSPLANTSNLFIVTL 224 (227)
T ss_dssp TCTTCCEEECCSS-CCCCC--GGGGGCTTCCEEECTTS-CCCBCGGGTTCTTCCEEEE
T ss_pred ccccceecccCCC-ccCCC--hhhcCCCCCCEEECcCC-cCCCCcccccCCCCCEEEe
Confidence 4556666666653 34432 23555666666666666 3444432 3555555554
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.99 E-value=2.6e-10 Score=115.66 Aligned_cols=193 Identities=14% Similarity=0.086 Sum_probs=109.5
Q ss_pred CCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEEeeccc-cch----hcccCCCCcEEE
Q 004729 312 RNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCR-VMR----VSIRCPQLEHLS 386 (733)
Q Consensus 312 ~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~-~~~----i~~~~~~L~~L~ 386 (733)
.++++|+|++|.++......+..+++|++|+++++.+..........+..++++.+..+. +.. ....+++|+.|+
T Consensus 32 ~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~ 111 (284)
T d1ozna_ 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (284)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEe
Confidence 457788888887775444567777888888888877766555556666777777665432 222 223456666666
Q ss_pred EcCCchHH----HhhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCCCCCChhHHHHHHHhcccccccccccC
Q 004729 387 LKRSNMAQ----AVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYC 462 (733)
Q Consensus 387 L~~~~l~~----~~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~ 462 (733)
+.++.+.. .+..+++|+.+++.+. .++... ...+..+++|+.|+++++. ++.... ..+..+++|+.+.+.++
T Consensus 112 l~~n~~~~~~~~~~~~~~~L~~l~l~~N-~l~~i~-~~~f~~~~~L~~L~l~~N~-l~~l~~-~~f~~l~~L~~l~l~~N 187 (284)
T d1ozna_ 112 LDRCGLQELGPGLFRGLAALQYLYLQDN-ALQALP-DDTFRDLGNLTHLFLHGNR-ISSVPE-RAFRGLHSLDRLLLHQN 187 (284)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSSC-CCEECT-TTTTTCTTCCEEECCSS
T ss_pred cCCcccccccccccchhcccchhhhccc-cccccC-hhHhccccchhhcccccCc-ccccch-hhhccccccchhhhhhc
Confidence 66655432 2445566666666663 343321 1234455666777766654 332111 11224566666666655
Q ss_pred CCC---CcCCCCCCCccEEEeCCCCCCchHHHHHhhCCCCcCEEEEecCC
Q 004729 463 PNI---SLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCN 509 (733)
Q Consensus 463 ~~l---~~~~~~l~~L~~L~L~~c~~l~~~~~~~l~~~~~L~~L~L~~~~ 509 (733)
... +.....+++|++|++++ +.+.......+..+++|++|++++|.
T Consensus 188 ~l~~i~~~~f~~l~~L~~L~l~~-N~i~~~~~~~~~~~~~L~~L~l~~N~ 236 (284)
T d1ozna_ 188 RVAHVHPHAFRDLGRLMTLYLFA-NNLSALPTEALAPLRALQYLRLNDNP 236 (284)
T ss_dssp CCCEECTTTTTTCTTCCEEECCS-SCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred cccccChhHhhhhhhcccccccc-cccccccccccccccccCEEEecCCC
Confidence 422 12223456666666666 34555555556666666666666654
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.96 E-value=7.1e-10 Score=112.32 Aligned_cols=63 Identities=16% Similarity=0.150 Sum_probs=36.2
Q ss_pred cccCcCCceeeeccCccccccccccccHHHHHhcCCCCcEEeecCCCCCChhhhhhhcCCCCCCCccEEEeecC
Q 004729 547 VSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNC 620 (733)
Q Consensus 547 l~~c~~L~~L~l~~n~L~~l~~~~~~~L~~l~~~~~~L~~L~Ls~C~~lt~~~~~~~~~~~~l~~L~~L~L~~c 620 (733)
+.++++|+.+.+.+|++..+.... +..+++|+.|++++ +.++......| +.+++|+.|+|+++
T Consensus 173 f~~l~~L~~l~l~~N~l~~i~~~~-------f~~l~~L~~L~l~~-N~i~~~~~~~~---~~~~~L~~L~l~~N 235 (284)
T d1ozna_ 173 FRGLHSLDRLLLHQNRVAHVHPHA-------FRDLGRLMTLYLFA-NNLSALPTEAL---APLRALQYLRLNDN 235 (284)
T ss_dssp TTTCTTCCEEECCSSCCCEECTTT-------TTTCTTCCEEECCS-SCCSCCCHHHH---TTCTTCCEEECCSS
T ss_pred hccccccchhhhhhccccccChhH-------hhhhhhcccccccc-ccccccccccc---ccccccCEEEecCC
Confidence 455666666666666666543221 12455677777766 45555444444 45666667666664
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=98.96 E-value=3.5e-09 Score=103.26 Aligned_cols=160 Identities=17% Similarity=0.131 Sum_probs=74.3
Q ss_pred ccCcCCceeeeccCccccccccccccHHHHHhcCCCCcEEeecCCCCCChhhhhhhcCCCCCCCccEEEeecCCCCcccc
Q 004729 548 SNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVR 627 (733)
Q Consensus 548 ~~c~~L~~L~l~~n~L~~l~~~~~~~L~~l~~~~~~L~~L~Ls~C~~lt~~~~~~~~~~~~l~~L~~L~L~~c~~L~~~~ 627 (733)
+++++|+.|++++|.+..+.. ...+++|+.+++++| .+++. .....+++|+.+.+.++.......
T Consensus 60 ~~l~~L~~L~ls~n~i~~~~~---------l~~l~~l~~l~~~~n-~~~~i-----~~l~~l~~L~~l~l~~~~~~~~~~ 124 (227)
T d1h6ua2 60 QYLNNLIGLELKDNQITDLAP---------LKNLTKITELELSGN-PLKNV-----SAIAGLQSIKTLDLTSTQITDVTP 124 (227)
T ss_dssp GGCTTCCEEECCSSCCCCCGG---------GTTCCSCCEEECCSC-CCSCC-----GGGTTCTTCCEEECTTSCCCCCGG
T ss_pred hcCCCCcEeecCCceeecccc---------ccccccccccccccc-ccccc-----ccccccccccccccccccccccch
Confidence 444555555555554443311 123445555555553 33321 112344555555555443222111
Q ss_pred c-cCCCccEEeccccccccccc-cccccccEEecccccccccccc-cccCCcEEEecCCCCcccccc--CcccccEEEec
Q 004729 628 F-CSTSLVSLSLVGCRAITALE-LKCPILEKVCLDGCDHIESASF-VPVALQSLNLGICPKLSTLGI--EALHMVVLELK 702 (733)
Q Consensus 628 ~-~~~sL~~L~L~~c~~L~~l~-~~~p~L~~L~L~~c~~L~~~~~-~~~~L~~L~L~~c~~L~~l~~--~~~~L~~L~l~ 702 (733)
. ....++.+.++++.-..... ..+++|++|++.++......++ ..++|++|++++| ++++++. ...+|++|+++
T Consensus 125 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~l~~l~~L~~L~Ls~n-~l~~l~~l~~l~~L~~L~Ls 203 (227)
T d1h6ua2 125 LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDN-KISDISPLASLPNLIEVHLK 203 (227)
T ss_dssp GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSS-CCCCCGGGGGCTTCCEEECT
T ss_pred hccccchhhhhchhhhhchhhhhccccccccccccccccccchhhcccccceecccCCC-ccCCChhhcCCCCCCEEECc
Confidence 1 34445555554432111111 2445556665555432211111 1235666666655 4555542 12357777777
Q ss_pred CCCCCCccCC--CCCCccEEeccC
Q 004729 703 GCGVLSDAYI--NCPLLTSLDASF 724 (733)
Q Consensus 703 ~c~~L~~~~~--~~p~L~~L~l~~ 724 (733)
+| .++++.. ++++|+.|++++
T Consensus 204 ~N-~lt~i~~l~~l~~L~~L~lsn 226 (227)
T d1h6ua2 204 NN-QISDVSPLANTSNLFIVTLTN 226 (227)
T ss_dssp TS-CCCBCGGGTTCTTCCEEEEEE
T ss_pred CC-cCCCCcccccCCCCCEEEeeC
Confidence 76 4555543 778888888763
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.89 E-value=7.4e-09 Score=103.59 Aligned_cols=164 Identities=25% Similarity=0.270 Sum_probs=78.5
Q ss_pred CccEEEeCCCCCCchHHHHHhhCCCCcCEEEEecCCCCccccc--CCCCCcEEEeccccCCccccccccccceeecccCc
Q 004729 474 MLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSL--ELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCA 551 (733)
Q Consensus 474 ~L~~L~L~~c~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~--~l~~L~~L~L~~c~~l~~l~l~~~~L~~l~l~~c~ 551 (733)
+|++|+|++ +.++......+..+++|++|+|++| .++.++. .+++|+.|++.++. ++... -.+..++
T Consensus 32 ~l~~L~Ls~-N~i~~l~~~~f~~l~~L~~L~L~~N-~l~~l~~~~~l~~L~~L~Ls~N~-l~~~~--------~~~~~l~ 100 (266)
T d1p9ag_ 32 DTTILHLSE-NLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQVDGTLPVLGTLDLSHNQ-LQSLP--------LLGQTLP 100 (266)
T ss_dssp TCCEEECTT-SCCSEEEGGGGTTCTTCCEEECTTS-CCCEEECCSCCTTCCEEECCSSC-CSSCC--------CCTTTCT
T ss_pred CCCEEECcC-CcCCCcCHHHhhccccccccccccc-ccccccccccccccccccccccc-ccccc--------ccccccc
Confidence 466666665 3455444444555666666666665 2344332 24555555554431 11110 0134455
Q ss_pred CCceeeeccCccccccccccccHHHHHhcCCCCcEEeecCCCCCChhhhhhhcCCCCCCCccEEEeecCCCCccccc---
Q 004729 552 ALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRF--- 628 (733)
Q Consensus 552 ~L~~L~l~~n~L~~l~~~~~~~L~~l~~~~~~L~~L~Ls~C~~lt~~~~~~~~~~~~l~~L~~L~L~~c~~L~~~~~--- 628 (733)
+|+.|++.++.+..+..... ..+++++.|++++ +.++......+ ..+++|+.|+++++ .++.++.
T Consensus 101 ~L~~L~l~~~~~~~~~~~~~-------~~l~~l~~L~l~~-n~l~~l~~~~~---~~l~~l~~l~l~~N-~l~~~~~~~~ 168 (266)
T d1p9ag_ 101 ALTVLDVSFNRLTSLPLGAL-------RGLGELQELYLKG-NELKTLPPGLL---TPTPKLEKLSLANN-NLTELPAGLL 168 (266)
T ss_dssp TCCEEECCSSCCCCCCSSTT-------TTCTTCCEEECTT-SCCCCCCTTTT---TTCTTCCEEECTTS-CCSCCCTTTT
T ss_pred ccccccccccccceeecccc-------ccccccccccccc-cccceeccccc---cccccchhcccccc-cccccCcccc
Confidence 56666666555554432211 1334566666655 34433222222 34555666666554 3444332
Q ss_pred -cCCCccEEecccccccccccc---ccccccEEeccc
Q 004729 629 -CSTSLVSLSLVGCRAITALEL---KCPILEKVCLDG 661 (733)
Q Consensus 629 -~~~sL~~L~L~~c~~L~~l~~---~~p~L~~L~L~~ 661 (733)
.+++|++|+|+++ .|+.++. .+++|+.|+|++
T Consensus 169 ~~l~~L~~L~Ls~N-~L~~lp~~~~~~~~L~~L~L~~ 204 (266)
T d1p9ag_ 169 NGLENLDTLLLQEN-SLYTIPKGFFGSHLLPFAFLHG 204 (266)
T ss_dssp TTCTTCCEEECCSS-CCCCCCTTTTTTCCCSEEECCS
T ss_pred ccccccceeecccC-CCcccChhHCCCCCCCEEEecC
Confidence 3455566666553 3554432 345566666655
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.88 E-value=8.9e-10 Score=110.49 Aligned_cols=56 Identities=20% Similarity=0.141 Sum_probs=30.0
Q ss_pred CCCCccEEEeCCCCCCchHHHHHhhCCCCcCEEEEecCCCCcccccC---CCCCcEEEecc
Q 004729 471 RLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLE---LPRLQNIRLVH 528 (733)
Q Consensus 471 ~l~~L~~L~L~~c~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~---l~~L~~L~L~~ 528 (733)
.+++|+.|++++ +.++......+..+++|++|+|++|. ++.+|.. +++|+.|.+.+
T Consensus 146 ~l~~l~~l~l~~-N~l~~~~~~~~~~l~~L~~L~Ls~N~-L~~lp~~~~~~~~L~~L~L~~ 204 (266)
T d1p9ag_ 146 PTPKLEKLSLAN-NNLTELPAGLLNGLENLDTLLLQENS-LYTIPKGFFGSHLLPFAFLHG 204 (266)
T ss_dssp TCTTCCEEECTT-SCCSCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCCCSEEECCS
T ss_pred ccccchhccccc-ccccccCccccccccccceeecccCC-CcccChhHCCCCCCCEEEecC
Confidence 345566666665 33444444445556666666666663 4455433 34555555543
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=98.85 E-value=5e-09 Score=99.96 Aligned_cols=57 Identities=14% Similarity=0.163 Sum_probs=31.1
Q ss_pred CCCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEEeeccc
Q 004729 311 LRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCR 371 (733)
Q Consensus 311 l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~ 371 (733)
++++++|+++++.+.. ...+..+++|++|++++|.+.+..+ ...+++|++|++..|.
T Consensus 39 l~~l~~L~l~~~~i~~--l~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~ 95 (199)
T d2omxa2 39 LDQVTTLQADRLGIKS--IDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQ 95 (199)
T ss_dssp HTTCCEEECTTSCCCC--CTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred hcCCCEEECCCCCCCC--ccccccCCCcCcCccccccccCccc--ccCCcccccccccccc
Confidence 3566667766666553 1234556666666666665543221 3345555555555543
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=98.83 E-value=1.6e-08 Score=97.34 Aligned_cols=35 Identities=29% Similarity=0.258 Sum_probs=17.1
Q ss_pred CCCCccEEEeCCCCCCchHHHHHhhCCCCcCEEEEecC
Q 004729 471 RLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNC 508 (733)
Q Consensus 471 ~l~~L~~L~L~~c~~l~~~~~~~l~~~~~L~~L~L~~~ 508 (733)
.+++|++|+++++ .+++.. .++.+++|+.|++++|
T Consensus 66 ~l~~L~~L~L~~n-~i~~l~--~~~~l~~L~~L~l~~n 100 (210)
T d1h6ta2 66 YLPNVTKLFLNGN-KLTDIK--PLANLKNLGWLFLDEN 100 (210)
T ss_dssp GCTTCCEEECCSS-CCCCCG--GGTTCTTCCEEECCSS
T ss_pred hCCCCCEEeCCCc-cccCcc--ccccCccccccccccc
Confidence 3555555555553 233321 2445555555555555
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=98.83 E-value=1.8e-08 Score=96.03 Aligned_cols=48 Identities=21% Similarity=0.245 Sum_probs=20.4
Q ss_pred CCCCccEEEeecCCCCccccc--cCCCccEEeccccccccccc--cccccccEE
Q 004729 608 GCPMLKSLVLDNCEGLTVVRF--CSTSLVSLSLVGCRAITALE--LKCPILEKV 657 (733)
Q Consensus 608 ~l~~L~~L~L~~c~~L~~~~~--~~~sL~~L~L~~c~~L~~l~--~~~p~L~~L 657 (733)
.+++|+.|++.+| .++.++. .+++|++|+++++ .+++++ .++++|++|
T Consensus 148 ~~~~L~~L~l~~n-~l~~l~~l~~l~~L~~L~ls~N-~i~~i~~l~~L~~L~~L 199 (199)
T d2omxa2 148 GLTSLQQLNFSSN-QVTDLKPLANLTTLERLDISSN-KVSDISVLAKLTNLESL 199 (199)
T ss_dssp TCTTCSEEECCSS-CCCCCGGGTTCTTCCEEECCSS-CCCCCGGGGGCTTCSEE
T ss_pred ccccccccccccc-cccCCccccCCCCCCEEECCCC-CCCCCccccCCCCCCcC
Confidence 3444455554443 2333321 3445555555543 244433 134455443
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=98.82 E-value=9.1e-09 Score=99.02 Aligned_cols=162 Identities=20% Similarity=0.192 Sum_probs=85.9
Q ss_pred CCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEEeeccccchhcccCCCCcEEEEcCCc
Q 004729 312 RNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIRCPQLEHLSLKRSN 391 (733)
Q Consensus 312 ~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~i~~~~~~L~~L~L~~~~ 391 (733)
..|++|+++++.+... ..+..+++|++|++++|.+.... . ...+++|+.|++++|.+..++
T Consensus 46 ~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~L~~n~i~~l~-~-~~~l~~L~~L~l~~n~i~~l~--------------- 106 (210)
T d1h6ta2 46 NSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIK-P-LANLKNLGWLFLDENKVKDLS--------------- 106 (210)
T ss_dssp HTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCG-G-GTTCTTCCEEECCSSCCCCGG---------------
T ss_pred cCccEEECcCCCCCCc--hhHhhCCCCCEEeCCCccccCcc-c-cccCccccccccccccccccc---------------
Confidence 4688888888877642 23667888888888888766432 2 345677777777766543221
Q ss_pred hHHHhhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCCCCCChhHHHHHHHhcccccccccccCCCCCc-CCC
Q 004729 392 MAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNISL-ESV 470 (733)
Q Consensus 392 l~~~~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~-~~~ 470 (733)
.+..+++|+.|++.++.. .... .+..++.|+.+++.++. +++... ...+++|+.+.++++..... ...
T Consensus 107 ---~l~~l~~L~~L~l~~~~~-~~~~---~l~~l~~l~~l~~~~n~-l~~~~~---~~~l~~L~~l~l~~n~l~~i~~l~ 175 (210)
T d1h6ta2 107 ---SLKDLKKLKSLSLEHNGI-SDIN---GLVHLPQLESLYLGNNK-ITDITV---LSRLTKLDTLSLEDNQISDIVPLA 175 (210)
T ss_dssp ---GGTTCTTCCEEECTTSCC-CCCG---GGGGCTTCCEEECCSSC-CCCCGG---GGGCTTCSEEECCSSCCCCCGGGT
T ss_pred ---cccccccccccccccccc-cccc---ccccccccccccccccc-cccccc---cccccccccccccccccccccccc
Confidence 133455555555555422 2111 13445566666665554 332111 11344555555554432111 122
Q ss_pred CCCCccEEEeCCCCCCchHHHHHhhCCCCcCEEEEe
Q 004729 471 RLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELD 506 (733)
Q Consensus 471 ~l~~L~~L~L~~c~~l~~~~~~~l~~~~~L~~L~L~ 506 (733)
.+++|++|+++++ .+++. ..++.+++|++|+|+
T Consensus 176 ~l~~L~~L~Ls~N-~i~~l--~~l~~l~~L~~L~Ls 208 (210)
T d1h6ta2 176 GLTKLQNLYLSKN-HISDL--RALAGLKNLDVLELF 208 (210)
T ss_dssp TCTTCCEEECCSS-CCCBC--GGGTTCTTCSEEEEE
T ss_pred CCCCCCEEECCCC-CCCCC--hhhcCCCCCCEEEcc
Confidence 4556666666653 34432 235556666666654
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.70 E-value=1.2e-07 Score=92.78 Aligned_cols=171 Identities=17% Similarity=0.127 Sum_probs=94.0
Q ss_pred CCccEEEeCCCCCCchHHHHHhhCCCCcCEEEEecCCCCccccc----CCCCCcEEEeccccCCccccccccccceeecc
Q 004729 473 PMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSL----ELPRLQNIRLVHCRKFADLNLRAMMLSSIMVS 548 (733)
Q Consensus 473 ~~L~~L~L~~c~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~----~l~~L~~L~L~~c~~l~~l~l~~~~L~~l~l~ 548 (733)
+++++|++++ +.++......+.++++|++|++++|.....++. .++.++.+.+..+.++....... +.
T Consensus 29 ~~l~~L~Ls~-n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~-------~~ 100 (242)
T d1xwdc1 29 RNAIELRFVL-TKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEA-------FQ 100 (242)
T ss_dssp SCCSEEEEES-CCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTS-------EE
T ss_pred CCCCEEECcC-CcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccccccccc-------cc
Confidence 4788888887 456655445677788888888888865554433 25677777766665554443222 46
Q ss_pred cCcCCceeeeccCccccccccccccHHHHHhcCCCCcEEeecCCCCCChhhhhhhcCCCCCCCccEEEeecCCCCccccc
Q 004729 549 NCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRF 628 (733)
Q Consensus 549 ~c~~L~~L~l~~n~L~~l~~~~~~~L~~l~~~~~~L~~L~Ls~C~~lt~~~~~~~~~~~~l~~L~~L~L~~c~~L~~~~~ 628 (733)
.+++|+.+.+.++.+....... .....+.+..+...+ ..++......|. +....++.|.+.++ .++.++.
T Consensus 101 ~l~~L~~l~l~~~~l~~~~~~~------~~~~l~~l~~~~~~n-~~l~~i~~~~~~--~~~~~l~~L~l~~n-~l~~i~~ 170 (242)
T d1xwdc1 101 NLPNLQYLLISNTGIKHLPDVH------KIHSLQKVLLDIQDN-INIHTIERNSFV--GLSFESVILWLNKN-GIQEIHN 170 (242)
T ss_dssp CCTTCCEEEEESCCCCSCCCCT------TTCBSSCEEEEEESC-TTCCEECTTSST--TSBSSCEEEECCSS-CCCEECT
T ss_pred ccccccccccchhhhccccccc------ccccccccccccccc-cccccccccccc--cccccceeeecccc-ccccccc
Confidence 6777888877777765442111 011223444434433 344433222221 12336666776553 3444432
Q ss_pred ---cCCCccEEeccccccccccc----cccccccEEeccc
Q 004729 629 ---CSTSLVSLSLVGCRAITALE----LKCPILEKVCLDG 661 (733)
Q Consensus 629 ---~~~sL~~L~L~~c~~L~~l~----~~~p~L~~L~L~~ 661 (733)
...+++++....+..|+.++ .++++|++|+|++
T Consensus 171 ~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~ 210 (242)
T d1xwdc1 171 CAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISR 210 (242)
T ss_dssp TTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTT
T ss_pred ccccchhhhccccccccccccccHHHhcCCCCCCEEECCC
Confidence 34455555544445555553 2456666666665
|
| >d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: F-box domain superfamily: F-box domain family: F-box domain domain: Cdc4 F-box and linker domains species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.60 E-value=2.6e-09 Score=89.64 Aligned_cols=59 Identities=17% Similarity=0.401 Sum_probs=49.3
Q ss_pred cccccCCCHHHHHHHHhcCChhhHHHHHHHHHHHHHhh-cCCCCeeEEeeCCCCCCHHHH
Q 004729 221 LEIRMDLTDDLLHMVFSFLDYVDLCRAAIVCRQWRAAS-AHEDFWRCLNFENRKISVEQF 279 (733)
Q Consensus 221 ~~~~~~LP~ElL~~If~~L~~~dl~~~~lVck~W~~l~-~~~~lw~~l~l~~~~~~~~~l 279 (733)
.|++..||+||+.+||+||+..|++++++|||+|+.++ .++.+|+++.+.........+
T Consensus 3 ~D~~~~LP~Ell~~I~s~Ld~~dL~~~s~Vcr~W~~~~~~d~~LWr~l~~~~~~~~~~~~ 62 (100)
T d1nexb1 3 RDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLLISENFVSPKGF 62 (100)
T ss_dssp CCHHHHSCHHHHHHHHTTSCHHHHHHHTTTCHHHHHHHHTCSHHHHHHHHHTTSSCHHHH
T ss_pred CCchhhCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHcCCCCCHHH
Confidence 37888999999999999999999999999999999986 468899988765544444433
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.59 E-value=8.1e-08 Score=94.10 Aligned_cols=147 Identities=16% Similarity=0.154 Sum_probs=77.3
Q ss_pred CCCCccEEEeCCCCCCchHHHHHhhCCCCcCEEEEecCCCCccccc--CCCCCcEEEecccc--CCccccccccccceee
Q 004729 471 RLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSL--ELPRLQNIRLVHCR--KFADLNLRAMMLSSIM 546 (733)
Q Consensus 471 ~l~~L~~L~L~~c~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~--~l~~L~~L~L~~c~--~l~~l~l~~~~L~~l~ 546 (733)
.+++++++.+..++.+.......+..+++|++|++.++. +...+. .+..++.+...... .+..+.. . .
T Consensus 76 ~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~-l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~--~-----~ 147 (242)
T d1xwdc1 76 NLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTG-IKHLPDVHKIHSLQKVLLDIQDNINIHTIER--N-----S 147 (242)
T ss_dssp SCTTCCEEEEECCTTCCEECTTSEECCTTCCEEEEESCC-CCSCCCCTTTCBSSCEEEEEESCTTCCEECT--T-----S
T ss_pred cccccccccccccccccccccccccccccccccccchhh-hcccccccccccccccccccccccccccccc--c-----c
Confidence 467777877777666666666667778888888888874 333332 23444444432221 1111111 0 1
Q ss_pred cccC-cCCceeeeccCccccccccccccHHHHHhcCCCCcEEeecCCCCCChhhhhhhcCCCCCCCccEEEeecCCCCcc
Q 004729 547 VSNC-AALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTV 625 (733)
Q Consensus 547 l~~c-~~L~~L~l~~n~L~~l~~~~~~~L~~l~~~~~~L~~L~Ls~C~~lt~~~~~~~~~~~~l~~L~~L~L~~c~~L~~ 625 (733)
+..+ ..++.+++.+|.++.+..... ..++++.+....++.++......| .++++|+.|+|+++ +++.
T Consensus 148 ~~~~~~~l~~L~l~~n~l~~i~~~~~--------~~~~l~~~~~l~~n~l~~l~~~~f---~~l~~L~~L~Ls~N-~l~~ 215 (242)
T d1xwdc1 148 FVGLSFESVILWLNKNGIQEIHNCAF--------NGTQLDELNLSDNNNLEELPNDVF---HGASGPVILDISRT-RIHS 215 (242)
T ss_dssp STTSBSSCEEEECCSSCCCEECTTTT--------TTCCEEEEECTTCTTCCCCCTTTT---TTSCCCSEEECTTS-CCCC
T ss_pred cccccccceeeecccccccccccccc--------cchhhhccccccccccccccHHHh---cCCCCCCEEECCCC-cCCc
Confidence 2222 356667777776665532111 234555555545456654332233 45677777777665 3555
Q ss_pred ccc-cCCCccEEe
Q 004729 626 VRF-CSTSLVSLS 637 (733)
Q Consensus 626 ~~~-~~~sL~~L~ 637 (733)
++. .+.+|..|.
T Consensus 216 l~~~~~~~l~~L~ 228 (242)
T d1xwdc1 216 LPSYGLENLKKLR 228 (242)
T ss_dssp CCSSSCTTCCEEE
T ss_pred cCHHHHcCCcccc
Confidence 543 233444443
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.56 E-value=3.2e-08 Score=90.82 Aligned_cols=98 Identities=15% Similarity=0.111 Sum_probs=56.5
Q ss_pred cCCCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEEeeccccchhc----ccCCCCcEE
Q 004729 310 LLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVS----IRCPQLEHL 385 (733)
Q Consensus 310 ~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~i~----~~~~~L~~L 385 (733)
.+.++++|+|++|.++.. ......+++|++|+|++|.+... + ....+++|++|++++|.+..++ ..+++|+.|
T Consensus 16 n~~~lr~L~L~~n~I~~i-~~~~~~l~~L~~L~Ls~N~i~~l-~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L 92 (162)
T d1a9na_ 16 NAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL-D-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL 92 (162)
T ss_dssp CTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE-C-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred CcCcCcEEECCCCCCCcc-CccccccccCCEEECCCCCCCcc-C-CcccCcchhhhhcccccccCCCccccccccccccc
Confidence 455678888888777632 23334577788888887776532 2 2345677777777777665443 235555555
Q ss_pred EEcCCchHH-----HhhCCCCccEEEEecC
Q 004729 386 SLKRSNMAQ-----AVLNCPLLHLLDIASC 410 (733)
Q Consensus 386 ~L~~~~l~~-----~~~~~~~L~~L~L~~c 410 (733)
++++|.+.. .+..+|+|++|++.++
T Consensus 93 ~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N 122 (162)
T d1a9na_ 93 ILTNNSLVELGDLDPLASLKSLTYLCILRN 122 (162)
T ss_dssp ECCSCCCCCGGGGGGGGGCTTCCEEECCSS
T ss_pred eeccccccccccccccccccccchhhcCCC
Confidence 555543321 1334455555555543
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.52 E-value=3.2e-08 Score=90.86 Aligned_cols=123 Identities=12% Similarity=0.131 Sum_probs=65.6
Q ss_pred CCCCCcEEEEecCcCCcccccccccCCCccEEEeeccccchhc--ccCCCCcEEEEcCCchHHH----hhCCCCccEEEE
Q 004729 334 DCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVS--IRCPQLEHLSLKRSNMAQA----VLNCPLLHLLDI 407 (733)
Q Consensus 334 ~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~i~--~~~~~L~~L~L~~~~l~~~----~~~~~~L~~L~L 407 (733)
++.+|++|+|++|.+... +.+...+++|+.|++++|.+..+. ..+++|+.|++++|.+..+ +..+++|++|++
T Consensus 16 n~~~lr~L~L~~n~I~~i-~~~~~~l~~L~~L~Ls~N~i~~l~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L 94 (162)
T d1a9na_ 16 NAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL 94 (162)
T ss_dssp CTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEEC
T ss_pred CcCcCcEEECCCCCCCcc-CccccccccCCEEECCCCCCCccCCcccCcchhhhhcccccccCCCcccccccccccccee
Confidence 455666666666665532 334455666666666666655443 3456666666666655432 345666666666
Q ss_pred ecCCCCChHHHHHHHhcCCCCcEEeccCCCCCChh-H-HHHHHHhccccccccc
Q 004729 408 ASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDE-S-LREIALSCANLRILNS 459 (733)
Q Consensus 408 ~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~-~-l~~l~~~~~~L~~L~L 459 (733)
+++ .+.+..-...+..+++|++|++++++ ++.. . -..++..+|+|+.|+-
T Consensus 95 ~~N-~i~~~~~l~~l~~l~~L~~L~l~~N~-i~~~~~~r~~~i~~lp~L~~LD~ 146 (162)
T d1a9na_ 95 TNN-SLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDF 146 (162)
T ss_dssp CSC-CCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETT
T ss_pred ccc-cccccccccccccccccchhhcCCCc-cccccchHHHHHHHCCCcCeeCC
Confidence 664 34332111223456666666666665 3221 1 1223345666666653
|
| >d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: F-box domain superfamily: F-box domain family: F-box domain domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.42 E-value=2.6e-08 Score=83.78 Aligned_cols=48 Identities=33% Similarity=0.531 Sum_probs=44.4
Q ss_pred ccccccCCCHHHHHHHHhcCChhhHHHHHHHHHHHHHhhcCCCCeeEE
Q 004729 220 DLEIRMDLTDDLLHMVFSFLDYVDLCRAAIVCRQWRAASAHEDFWRCL 267 (733)
Q Consensus 220 ~~~~~~~LP~ElL~~If~~L~~~dl~~~~lVck~W~~l~~~~~lw~~l 267 (733)
..|++..||+||+.+||+||+..|++++++|||+|+.++.++.+|+.+
T Consensus 15 ~~D~i~~LP~Eil~~Ils~Ld~~dL~~~~~vcr~w~~l~~~~~lW~~~ 62 (102)
T d2ovrb1 15 QRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREK 62 (102)
T ss_dssp CCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHH
T ss_pred ccCChhhCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCHHHHHHH
Confidence 357888999999999999999999999999999999999999999764
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.33 E-value=3.3e-07 Score=79.77 Aligned_cols=63 Identities=27% Similarity=0.277 Sum_probs=34.1
Q ss_pred hhcCCCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEEeeccccc
Q 004729 308 VSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVM 373 (733)
Q Consensus 308 l~~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~ 373 (733)
+..+++|++|++++|.+. .++..+..+++|++|++++|.+... +. ...+++|++|++.+|.+.
T Consensus 16 l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~l-~~-~~~l~~L~~L~l~~N~i~ 78 (124)
T d1dcea3 16 LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV-DG-VANLPRLQELLLCNNRLQ 78 (124)
T ss_dssp GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCC-GG-GTTCSSCCEEECCSSCCC
T ss_pred cccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccccc-Cc-cccccccCeEECCCCccC
Confidence 445556666666666555 2334455566666666666655432 22 345555666666555543
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.31 E-value=2.4e-07 Score=80.59 Aligned_cols=120 Identities=20% Similarity=0.243 Sum_probs=72.4
Q ss_pred CEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEEeeccccchhcccCCCCcEEEEcCCchHH
Q 004729 315 EALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIRCPQLEHLSLKRSNMAQ 394 (733)
Q Consensus 315 ~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~i~~~~~~L~~L~L~~~~l~~ 394 (733)
+.|+|++|.++.. ..+..+++|++|++++|.+.. ++.....+++|+.|++++|.+..++
T Consensus 1 R~L~Ls~n~l~~l--~~l~~l~~L~~L~ls~N~l~~-lp~~~~~l~~L~~L~l~~N~i~~l~------------------ 59 (124)
T d1dcea3 1 RVLHLAHKDLTVL--CHLEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALENVD------------------ 59 (124)
T ss_dssp SEEECTTSCCSSC--CCGGGGTTCCEEECCSSCCCC-CCGGGGGCTTCCEEECCSSCCCCCG------------------
T ss_pred CEEEcCCCCCCCC--cccccCCCCCEEECCCCccCc-chhhhhhhhcccccccccccccccC------------------
Confidence 5788999888732 346778899999999998874 4444567888888888887664432
Q ss_pred HhhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCCCCCChh--HHHHHHHhccccccc
Q 004729 395 AVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDE--SLREIALSCANLRIL 457 (733)
Q Consensus 395 ~~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~--~l~~l~~~~~~L~~L 457 (733)
.+..+++|++|+++++ .+.+..-...+..+++|+.|+++++. ++.. ....+...+|+|+.|
T Consensus 60 ~~~~l~~L~~L~l~~N-~i~~~~~~~~l~~~~~L~~L~l~~N~-i~~~~~~~~~l~~~lp~L~~L 122 (124)
T d1dcea3 60 GVANLPRLQELLLCNN-RLQQSAAIQPLVSCPRLVLLNLQGNS-LCQEEGIQERLAEMLPSVSSI 122 (124)
T ss_dssp GGTTCSSCCEEECCSS-CCCSSSTTGGGGGCTTCCEEECTTSG-GGGSSSCTTHHHHHCTTCSEE
T ss_pred ccccccccCeEECCCC-ccCCCCCchhhcCCCCCCEEECCCCc-CCcCccHHHHHHHHCcCcceE
Confidence 1334556666666552 33332211224556777777777655 3211 123344455666554
|
| >d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: F-box domain superfamily: F-box domain family: F-box domain domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.21 E-value=1.4e-07 Score=81.46 Aligned_cols=49 Identities=27% Similarity=0.605 Sum_probs=44.5
Q ss_pred cccccCCC----HHHHHHHHhcCChhhHHHHHHHHHHHHHhhcCCCCeeEEee
Q 004729 221 LEIRMDLT----DDLLHMVFSFLDYVDLCRAAIVCRQWRAASAHEDFWRCLNF 269 (733)
Q Consensus 221 ~~~~~~LP----~ElL~~If~~L~~~dl~~~~lVck~W~~l~~~~~lw~~l~l 269 (733)
.|++..|| +||+.+||+||+..|++++++|||+|+.++.++.+|+++..
T Consensus 8 ~D~i~~LP~~l~~EI~~~Ils~Ld~~dL~~~s~Vck~W~~l~~d~~lWk~~~~ 60 (118)
T d1p22a1 8 RDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIE 60 (118)
T ss_dssp CCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHHHHH
T ss_pred ccHHHHCCCCChHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 46777888 59999999999999999999999999999999999998654
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=98.16 E-value=4.8e-08 Score=92.83 Aligned_cols=110 Identities=16% Similarity=0.219 Sum_probs=60.9
Q ss_pred HHhhcCCCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEEeeccccchhcccCCCCcEE
Q 004729 306 KAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIRCPQLEHL 385 (733)
Q Consensus 306 ~~l~~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~i~~~~~~L~~L 385 (733)
..+..+++|++|+|++|.++.. ..+..+++|++|+|++|.+.. ++.+...+++|+.|++.+|.+..+.
T Consensus 42 ~sl~~L~~L~~L~Ls~n~I~~i--~~l~~l~~L~~L~Ls~N~i~~-i~~~~~~~~~L~~L~l~~N~i~~l~--------- 109 (198)
T d1m9la_ 42 ATLSTLKACKHLALSTNNIEKI--SSLSGMENLRILSLGRNLIKK-IENLDAVADTLEELWISYNQIASLS--------- 109 (198)
T ss_dssp HHHHHTTTCCEEECSEEEESCC--CCHHHHTTCCEEECCEEEECS-CSSHHHHHHHCCEEECSEEECCCHH---------
T ss_pred hHHhcccccceeECcccCCCCc--ccccCCccccChhhccccccc-ccccccccccccccccccccccccc---------
Confidence 4456677778888877766632 235566777777777776542 2233333455666666665443221
Q ss_pred EEcCCchHHHhhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCCC
Q 004729 386 SLKRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCS 437 (733)
Q Consensus 386 ~L~~~~l~~~~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~ 437 (733)
.+..+++|+.|+++++ .+.+..-...+..+++|+.|++++++
T Consensus 110 ---------~~~~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~L~~N~ 151 (198)
T d1m9la_ 110 ---------GIEKLVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp ---------HHHHHHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSSH
T ss_pred ---------cccccccccccccccc-hhccccccccccCCCccceeecCCCc
Confidence 1344556666666653 34433222234556666666666654
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.02 E-value=1.4e-06 Score=81.92 Aligned_cols=99 Identities=17% Similarity=0.183 Sum_probs=69.5
Q ss_pred CCCCEEEecCccCCh-HHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEEeeccccchhc----ccCCCCcEEE
Q 004729 312 RNLEALTLGRGQLGD-AFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVS----IRCPQLEHLS 386 (733)
Q Consensus 312 ~~L~~L~Ls~~~i~~-~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~i~----~~~~~L~~L~ 386 (733)
+++++|+|++|.++. .....+..+++|++|+|+++.+.......+..+++|++|++++|.+..++ .++++|+.|+
T Consensus 29 ~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~ 108 (192)
T d1w8aa_ 29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLN 108 (192)
T ss_dssp TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEE
T ss_pred CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCcccccc
Confidence 467777777777753 23344566777888888777776666666667777888888877766443 4577788888
Q ss_pred EcCCchHHH----hhCCCCccEEEEecC
Q 004729 387 LKRSNMAQA----VLNCPLLHLLDIASC 410 (733)
Q Consensus 387 L~~~~l~~~----~~~~~~L~~L~L~~c 410 (733)
|++|.+..+ +..+++|++|+|++.
T Consensus 109 L~~N~l~~i~~~~f~~l~~L~~l~L~~N 136 (192)
T d1w8aa_ 109 LYDNQISCVMPGSFEHLNSLTSLNLASN 136 (192)
T ss_dssp CCSSCCCEECTTSSTTCTTCCEEECTTC
T ss_pred cCCccccccCHHHhcCCccccccccccc
Confidence 887776543 567888888888873
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.00 E-value=1.9e-06 Score=80.97 Aligned_cols=120 Identities=15% Similarity=0.147 Sum_probs=88.3
Q ss_pred CCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcc-cccccccCCCccEEEeeccccchhc----ccCCCCcEEEEc
Q 004729 314 LEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNG-VQEIPINHDQLRRLEITKCRVMRVS----IRCPQLEHLSLK 388 (733)
Q Consensus 314 L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~-~~~~~~~~~~L~~L~L~~~~~~~i~----~~~~~L~~L~L~ 388 (733)
.+.++.+++.++ .+|..+ .+++++|+|++|.+... ....+..+++|++|++.++.+..+. ..+++|+.|+|+
T Consensus 10 ~~~v~Cs~~~L~-~iP~~l--p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls 86 (192)
T d1w8aa_ 10 GTTVDCTGRGLK-EIPRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TTEEECTTSCCS-SCCSCC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCEEEEeCCCcC-ccCCCC--CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeec
Confidence 456777777666 233322 26899999999988753 3455678899999999998876444 457889999999
Q ss_pred CCchHHH----hhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCCCC
Q 004729 389 RSNMAQA----VLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSC 438 (733)
Q Consensus 389 ~~~l~~~----~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~~ 438 (733)
+|.+..+ +.++++|++|+|++. .++... +..+..+++|++|+|+++..
T Consensus 87 ~N~l~~l~~~~F~~l~~L~~L~L~~N-~l~~i~-~~~f~~l~~L~~l~L~~N~~ 138 (192)
T d1w8aa_ 87 ENKIKEISNKMFLGLHQLKTLNLYDN-QISCVM-PGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSS-CCCEEC-TTSSTTCTTCCEEECTTCCB
T ss_pred cccccccCHHHHhCCCcccccccCCc-cccccC-HHHhcCCccccccccccccc
Confidence 9877643 678899999999984 565432 23456788999999998763
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=97.97 E-value=1.4e-07 Score=89.42 Aligned_cols=138 Identities=14% Similarity=0.141 Sum_probs=87.0
Q ss_pred HHHHHHhhcC-CCCeeEEeeCCCCCCHHHHHHHHhhCCCccEEEEcCCCchhHHHHHHhhcCCCCCEEEecCccCChHHH
Q 004729 251 CRQWRAASAH-EDFWRCLNFENRKISVEQFEDVCQRYPNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFF 329 (733)
Q Consensus 251 ck~W~~l~~~-~~lw~~l~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~i~~~~~ 329 (733)
-++|...... +.-+..+++.......+.+...+..+++++.|++++. .+... ..+..+++|++|+|++|.+.. ++
T Consensus 11 l~~~~~~~~~~~~~~~~~~l~~~~~~i~~l~~sl~~L~~L~~L~Ls~n-~I~~i--~~l~~l~~L~~L~Ls~N~i~~-i~ 86 (198)
T d1m9la_ 11 IRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTN-NIEKI--SSLSGMENLRILSLGRNLIKK-IE 86 (198)
T ss_dssp HHHHHHTTCCCCTTCSCEECCBCCTTCCCCHHHHHHTTTCCEEECSEE-EESCC--CCHHHHTTCCEEECCEEEECS-CS
T ss_pred HHHHHHHcCCcccccceeeeecccCchhhhhhHHhcccccceeECccc-CCCCc--ccccCCccccChhhccccccc-cc
Confidence 3566554332 3334556654432222233344667889999999873 44443 246788999999999998763 22
Q ss_pred HhccCCCCCcEEEEecCcCCcccccccccCCCccEEEeeccccchh-----cccCCCCcEEEEcCCchHH
Q 004729 330 HALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRV-----SIRCPQLEHLSLKRSNMAQ 394 (733)
Q Consensus 330 ~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~i-----~~~~~~L~~L~L~~~~l~~ 394 (733)
.....+++|++|++++|.+... +. ...+++|+.|++++|.+..+ ...+++|+.|++++|.+..
T Consensus 87 ~~~~~~~~L~~L~l~~N~i~~l-~~-~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ 154 (198)
T d1m9la_ 87 NLDAVADTLEELWISYNQIASL-SG-IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN 154 (198)
T ss_dssp SHHHHHHHCCEEECSEEECCCH-HH-HHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHH
T ss_pred cccccccccccccccccccccc-cc-ccccccccccccccchhccccccccccCCCccceeecCCCcccc
Confidence 2223356899999999987742 22 45678899999988876432 2356666666666655443
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=97.48 E-value=0.00024 Score=64.30 Aligned_cols=113 Identities=12% Similarity=0.051 Sum_probs=63.5
Q ss_pred HhhCCCCccEEEEecCCCCChHHHHHHH---hcCCCCcEEeccCCCCCChhHHHHHHH---hcccccccccccCCCCC--
Q 004729 395 AVLNCPLLHLLDIASCHKLSDAAIRLAA---TSCPQLESLDMSNCSCVSDESLREIAL---SCANLRILNSSYCPNIS-- 466 (733)
Q Consensus 395 ~~~~~~~L~~L~L~~c~~l~~~~l~~l~---~~~~~L~~L~L~~~~~l~~~~l~~l~~---~~~~L~~L~L~~~~~l~-- 466 (733)
+..+.|+|++|++.++..+++..+..+. ..+++|++|+++++. +++.+...++. ..+.|+.+++.++..-.
T Consensus 12 ~~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~-l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g 90 (166)
T d1io0a_ 12 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNVESNFISGSG 90 (166)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred HHhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCc-ccHHHHHHHHHHHhhcccchhhhhccccccchh
Confidence 3445667777777665566666644333 345667777777765 66666555543 34455555555443211
Q ss_pred -----cCCCCCCCccEEEeCCC-CCCchHHHHHhh----CCCCcCEEEEecC
Q 004729 467 -----LESVRLPMLTVLQLHSC-EGITSASMAAIS----HSYMLEVLELDNC 508 (733)
Q Consensus 467 -----~~~~~l~~L~~L~L~~c-~~l~~~~~~~l~----~~~~L~~L~L~~~ 508 (733)
......++|+.++|..+ +.+++.+...++ ..++|++|+++.+
T Consensus 91 ~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~ 142 (166)
T d1io0a_ 91 ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT 142 (166)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred HHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCC
Confidence 11124566777666543 356665544443 4677777776543
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=97.44 E-value=0.00025 Score=64.34 Aligned_cols=31 Identities=23% Similarity=0.338 Sum_probs=17.4
Q ss_pred HHHHHhcCCCCcEEeccCCCCCChhHHHHHH
Q 004729 418 IRLAATSCPQLESLDMSNCSCVSDESLREIA 448 (733)
Q Consensus 418 l~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~ 448 (733)
+..+..+.++|++|+|+++..+++.++..++
T Consensus 7 l~~l~~n~~~L~~L~L~~~~~i~~~~~~~l~ 37 (167)
T d1pgva_ 7 INRLREDDTDLKEVNINNMKRVSKERIRSLI 37 (167)
T ss_dssp HHHHHTTCSSCCEEECTTCCSSCHHHHHHHH
T ss_pred HHHHHhCCCCCcEEEeCCCCCCCHHHHHHHH
Confidence 4455555566666666654445555555554
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=97.34 E-value=0.00031 Score=63.59 Aligned_cols=50 Identities=22% Similarity=0.310 Sum_probs=24.5
Q ss_pred hhCCCCccEEEEecCCCCChHHHHHH---HhcCCCCcEEeccCCCCCChhHHHH
Q 004729 396 VLNCPLLHLLDIASCHKLSDAAIRLA---ATSCPQLESLDMSNCSCVSDESLRE 446 (733)
Q Consensus 396 ~~~~~~L~~L~L~~c~~l~~~~l~~l---~~~~~~L~~L~L~~~~~l~~~~l~~ 446 (733)
..+.|+|++|+|+++..+++.++..+ +...++|++|+|++|. +++.+...
T Consensus 11 ~~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~-l~~~~~~~ 63 (167)
T d1pgva_ 11 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTA-ISDSEARG 63 (167)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSC-CBHHHHTT
T ss_pred HhCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccc-cchhHHHH
Confidence 34455555555555444555443322 2334456666665554 55444333
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.31 E-value=5.1e-05 Score=68.21 Aligned_cols=85 Identities=18% Similarity=0.163 Sum_probs=55.8
Q ss_pred hhcCCCCCEEEecCc-cCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEEeeccccchhccc---CCCCc
Q 004729 308 VSLLRNLEALTLGRG-QLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIR---CPQLE 383 (733)
Q Consensus 308 l~~l~~L~~L~Ls~~-~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~i~~~---~~~L~ 383 (733)
+..+++|++|++.++ .++......|..+++|+.|+|++|.+....+..+..+++|++|+|++|.+..++.. ..+|+
T Consensus 27 l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~~~l~ 106 (156)
T d2ifga3 27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQ 106 (156)
T ss_dssp SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCCCC
T ss_pred ccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCcccChhhhcccccc
Confidence 445667777777654 46644445566777778888777777665556666777788888887776655432 23566
Q ss_pred EEEEcCCch
Q 004729 384 HLSLKRSNM 392 (733)
Q Consensus 384 ~L~L~~~~l 392 (733)
.|+|++|.+
T Consensus 107 ~L~L~~Np~ 115 (156)
T d2ifga3 107 ELVLSGNPL 115 (156)
T ss_dssp EEECCSSCC
T ss_pred ccccCCCcc
Confidence 777766644
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.24 E-value=0.00017 Score=64.67 Aligned_cols=98 Identities=19% Similarity=0.158 Sum_probs=66.5
Q ss_pred CCCCCEEEecCccCChHHHHhccCCCCCcEEEEecCc-CCcccccccccCCCccEEEeeccccchhc----ccCCCCcEE
Q 004729 311 LRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDAT-LGNGVQEIPINHDQLRRLEITKCRVMRVS----IRCPQLEHL 385 (733)
Q Consensus 311 l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~-l~~~~~~~~~~~~~L~~L~L~~~~~~~i~----~~~~~L~~L 385 (733)
+...+.++.+++.+. ..+..+..+++|++|++.++. +...-...+..+++|+.|++++|.+..+. ..+++|+.|
T Consensus 7 c~~~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L 85 (156)
T d2ifga3 7 PHGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRL 85 (156)
T ss_dssp CSSSSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEE
T ss_pred cCCCCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccce
Confidence 344556777766555 345556677888888887654 55444455667888888888888876553 467888888
Q ss_pred EEcCCchHHH---hhCCCCccEEEEec
Q 004729 386 SLKRSNMAQA---VLNCPLLHLLDIAS 409 (733)
Q Consensus 386 ~L~~~~l~~~---~~~~~~L~~L~L~~ 409 (733)
+|++|.+..+ .-...+|+.|+|++
T Consensus 86 ~Ls~N~l~~l~~~~~~~~~l~~L~L~~ 112 (156)
T d2ifga3 86 NLSFNALESLSWKTVQGLSLQELVLSG 112 (156)
T ss_dssp ECCSSCCSCCCSTTTCSCCCCEEECCS
T ss_pred eccCCCCcccChhhhccccccccccCC
Confidence 8888877643 12234688888887
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=96.94 E-value=0.0038 Score=55.95 Aligned_cols=42 Identities=14% Similarity=0.047 Sum_probs=24.5
Q ss_pred hhCCCCccEEEEecC-CCCChHH---HHHHHhcCCCCcEEeccCCC
Q 004729 396 VLNCPLLHLLDIASC-HKLSDAA---IRLAATSCPQLESLDMSNCS 437 (733)
Q Consensus 396 ~~~~~~L~~L~L~~c-~~l~~~~---l~~l~~~~~~L~~L~L~~~~ 437 (733)
+...++|+.+.|..+ ..+.+.+ +...+..+++|++|++....
T Consensus 98 l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~ 143 (166)
T d1io0a_ 98 LQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 143 (166)
T ss_dssp GGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCC
Confidence 445566666666543 2455544 33445567778888776543
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.11 E-value=0.0004 Score=62.54 Aligned_cols=64 Identities=19% Similarity=0.151 Sum_probs=39.7
Q ss_pred hcCCCCCEEEecCccCChH--HHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEEeecccc
Q 004729 309 SLLRNLEALTLGRGQLGDA--FFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRV 372 (733)
Q Consensus 309 ~~l~~L~~L~Ls~~~i~~~--~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~~ 372 (733)
..+++|++|+|++|.++.. +...+..+++|+.|++++|.+.+...-......+|++|++.+|++
T Consensus 62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl 127 (162)
T d1koha1 62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSL 127 (162)
T ss_dssp HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTT
T ss_pred HhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCc
Confidence 4677888888888877642 234445677788888887776643221222344566666666654
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.38 E-value=0.0032 Score=56.25 Aligned_cols=65 Identities=22% Similarity=0.246 Sum_probs=41.9
Q ss_pred ccCcCCceeeeccCccccccccccccHHHHHhcCCCCcEEeecCCCCCChhhhhhhcCCCCCCCccEEEeecCC
Q 004729 548 SNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCE 621 (733)
Q Consensus 548 ~~c~~L~~L~l~~n~L~~l~~~~~~~L~~l~~~~~~L~~L~Ls~C~~lt~~~~~~~~~~~~l~~L~~L~L~~c~ 621 (733)
..|++|+.|++++|.|+.+. .+......|++|+.|++++ +.+++...-.+ . ...+|+.|.+.+++
T Consensus 62 ~~~~~L~~L~Ls~N~i~~l~-----~~~~~~~~l~~L~~L~Ls~-N~i~~l~~l~~--l-~~~~L~~L~L~~Np 126 (162)
T d1koha1 62 ENIPELLSLNLSNNRLYRLD-----DMSSIVQKAPNLKILNLSG-NELKSERELDK--I-KGLKLEELWLDGNS 126 (162)
T ss_dssp HHCTTCCCCCCCSSCCCCCS-----GGGTHHHHSTTCCCCCCTT-SCCCCGGGHHH--H-TTCCCSSCCCTTST
T ss_pred HhCCCCCEeeCCCccccCCc-----hhHHHHhhCCccccccccc-Cccccchhhhh--h-hccccceeecCCCC
Confidence 46788888888888877653 2333445678888888888 57765432122 1 23467777777764
|