Citrus Sinensis ID: 004747

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730--
Protein Sequence
MELKRDLNVHSCRALKLQMLPLLLFLLLLCSNPSESLELNLEDKASLLLFKSLVQDPTQKLSSWVGSNCTNWTGVACNFQTGHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVPWKQGYQKFPGAFAGNPNLCLESSHGECNRTSLPLVPGKTLREEMTEGPISIWAFCLSFFVSFYLGVVALFCSARTRRYILQTKV
Secondary Structure (PSIPRED)
cccccccccccccHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHccccccccccccccccccccccEEcccccccEEEEEccccccEEEccccccccccccEEEcccccccccccccccccccccEEEcccccccccccHHHHccccccEEEcccccccEEcccHHHHcccccccEEEccccEEEEEccHHHcccccccEEEccccccccccccccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHccccccccEEccccccccccccHHHHccccccEEEcccccccccccHHHHHccccccccEEEccccccEEcccccccccccccEEEccccEEEEEccccccccccccEEEccccccccccccccccccccccccccccEEEEEccccccccccccEEEccccEEEEcccccccccccccEEEcccccccccccHHHHccccccEEEcccccccccccHHHcccccccEEEccccccccccccHHHccEEccccccccccccccccccccccEEEEEcEEEEccccccccccccccEEEcccccccccccHHHHcccccccccccccccccccccccccccccEEEcccccccccccccccccccccEEEccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccEEEHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccccccccccccccccEEEEEcccccEEEEEEcccccccccccHHHccccccEEEEcccccccccccHHHccccccEEEEEccccccccccHHHHccccccEEEEcccccccccccHHHHcccccccEEEcccccccccccHHHcccccccEEEEcccccccccccccccccEEEEccccccccccHHHcccHcccEEEEccccccccccHHHcccccccEEEEccccccccccHHHccccccEEEEEccccccccccHHHcccccccccEEEEccccccEEcccHHHHHcccccEEEccccEEEEEccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccHHHHcccccEEEEcccccccccccHHHccEEEEcccccccccccHHHccccccEEEEcccccccccccHHHccccccEEEEccccccEEcccHHHHHcccccEEEccccEEEEEcccHcccccccEEEcccccccccccHHHHHccccEEEEEccccccccccccccHccccHHHcccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHccccc
Coil and Loop (DISEMBL)
melkrdlnVHSCRALKLQMLPLLLFLLLLcsnpseslelnLEDKASLLLFKSLvqdptqklsswvgsnctnwtgvacnfqtghvvsinltdtslsgqvhprlckLSFLEFLVLSsnaftgristcfgglsglktldlsynkfvgVVPDAIMKLRNLRELILkgnpelggvfpgwvgnfsmnleklDFSFNSFCGEIPESLYYLKslkhldleknnltgnvHDFYQSLLVLNlgsnrfsgtlpCFAASAMSLTVLkldnnsvvggIPTCIASLQALTHLnlshnhlnyeispRLVFFEKLLLLDLsfndlsgplpskiaqTTEKAGLVLLDlshnrfsgeipLKITELKSLQALFLsnnlligeiparignLTYLQVIDLShnmlsgsiplniVGCFQLLALIVnnnnlsgeiqpeldaldslkildisnnqisgeipltlaglksleivdfssnnlsgslnDAITKWTNLKYFSIARNKlsgnlpnwLFSFQAIQMMDfstnkfmgfipdgnfnfslnfnksdigrsmpaksfvlprsMVIRISVTAIDTNELSFNYQLFSAvgmdlsdnllhgtipkglfqlqgleylnlsfnfldgqvpglyrlrslraldlshnsltgqipgnisSLQELTLLNLsynsfsgfvpwkqgyqkfpgafagnpnlclesshgecnrtslplvpgktlreemtegpISIWAFCLSFFVSFYLGVVALFCSARTRRYILQTKV
Flexible Loop (DISEMBL)
melkrdlnVHSCRALKLQMLPLLLFLLLLCSNPSESLELNLEDKASLLLFKSLVQDPTQKLSSWVGSNCTNWTGVACNFQTGHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVPWKQGYQKFPGAFAGNPNLCLESSHGECNRTSLPLVPGKTLREEMTEGPISIWAFCLSFFVSFYLGVVALFCSARTRRYILQTKV
Low Complexity Region (SEG)
MELKRDLNVHSCRAlklqmlplllfllllCSNPSESLELNLEDKASLLLFKSLVQDPTQKLSSWVGSNCTNWTGVACNFQTGHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALThlnlshnhlnYEISPRLVFFEKlllldlsfndlsGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVPWKQGYQKFPGAFAGNPNLCLESSHGECNRTSLPLVPGKTLREEMTEGPISIWAFCLSFFVSFYLGVVALFCSARTRRYILQTKV
Disordered region (IsUnstruct)
******LNVHSCRALKLQMLPLLLFLLLLCSNPSESLELNLEDKASLLLFKSLVQDPTQKLSSWVGSNCTNWTGVACNFQTGHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVPWKQGYQKFPGAFAGNPNLCLESSHGECNRTSLPLVPGKTLREEMTEGPISIWAFCLSFFVSFYLGVVALFCSARTRRYIL****
Disordered Region (DISOPRED)
*************ALKLQMLPLLLFLLLLCSNPSES****LEDKASLLLFKSLVQDPTQKLSSWVGSNCTNWTGVACNFQTGHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVPWKQGYQKFPGAFAGNPNLCLESS**************************SIWAFCLSFFVSFYLGVVALFCSARTRRYILQT**
Disordered Region (DISEMBL)
MELKRDLNVHSCRALKLQMLPLLLFLLLLCSNPSESLELNLEDKASLLLFKSLVQDPTQKLSSWVGSNCTNWTGVACNFQTGHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVPWKQGYQKFPGAFAGNPNLCLESSHGECNRTSLPLVPGKTLREEMTEGPISIWAFCLSFFVSFYLGVVALFCSARTRRYILQTKV
Disordered Region (DISPRO)
MELKRDLNVHSCRALKLQMLPLLLFLLLLCSNPSESLELNLEDKASLLLFKSLVQDPTQKLSSWVGSNCTNWTGVACNFQTGHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVPWKQGYQKFPGAFAGNPNLCLESSHGEC****************MTEGPISIWAFCLSFFVSFYLGVVALFCSARTRR*******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MELKRDLNVHSCRALKLQMLPLLLFLLLLCSNPSESLELNLEDKASLLLFKSLVQDPTQKLSSWVGSNCTNWTGVACNFQTGHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVPWKQGYQKFPGAFAGNPNLCLESSHGECNRTSLPLVPGKTLREEMTEGPISIWAFCLSFFVSFYLGVVALFCSARTRRYILQTKV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	732	2.2.26 [Sep-21-2011]
O80809	720	Leucine-rich repeat recep	yes	no	0.943	0.959	0.635	0.0
Q9FL28	1173	LRR receptor-like serine/	no	no	0.799	0.498	0.329	4e-73
Q8VZG8	1045	Probable LRR receptor-lik	no	no	0.846	0.593	0.307	3e-71
O82318	960	Probably inactive leucine	no	no	0.849	0.647	0.324	2e-67
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.785	0.460	0.331	3e-67
Q9LHP4	1141	Receptor-like protein kin	no	no	0.755	0.484	0.337	5e-66
C0LGS2	1136	Probable LRR receptor-lik	no	no	0.894	0.576	0.309	3e-64
Q9FIZ3	1252	LRR receptor-like serine/	no	no	0.769	0.449	0.317	2e-63
Q9SSL9	1123	Leucine-rich repeat recep	no	no	0.733	0.478	0.316	4e-63
Q9LVP0	1102	Probable leucine-rich rep	no	no	0.821	0.545	0.332	5e-63

>sp|O80809|CLV2_ARATH Leucine-rich repeat receptor-like protein CLAVATA2 OS=Arabidopsis thaliana GN=CLV2 PE=1 SV=1

 Score =  843 bits (2179), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 442/696 (63%), Positives = 544/696 (78%), Gaps = 5/696 (0%)

Query: 38  ELNLEDKASLLLFKSLVQDPTQKLSSWVGSNCTNWTGVACNFQTGHVVSINLTDTSLSGQ 97
           +L+ +DKASLL+F+  + D  + LS+W GS+C+NWTG+AC   TG V+S+ L+  +LS Q
Sbjct: 29  DLDPQDKASLLIFRVSIHDLNRSLSTWYGSSCSNWTGLACQNPTGKVLSLTLSGLNLSSQ 88

Query: 98  VHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLR 157
           +HP LCKLS L+ L LS N F+G I +CFG L  L+TL+LS N+FVG +P   + L+ LR
Sbjct: 89  IHPSLCKLSSLQSLDLSHNNFSGNIPSCFGSLRNLRTLNLSRNRFVGSIPATFVSLKELR 148

Query: 158 ELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLT 217
           E++L  N +LGGV P W GNFSMNLE++DFSF SF GE+PESL YLKSLK+L+LE NN+T
Sbjct: 149 EVVLSENRDLGGVVPHWFGNFSMNLERVDFSFCSFVGELPESLLYLKSLKYLNLESNNMT 208

Query: 218 GNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTH 277
           G + DF Q L+VLNL SN+FSGTLPCF AS  SL++L +  NS+VGG+P+C+ SL+ L+H
Sbjct: 209 GTLRDFQQPLVVLNLASNQFSGTLPCFYASRPSLSILNIAENSLVGGLPSCLGSLKELSH 268

Query: 278 LNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFS 337
           LNLS N  NYEISPRL+F EKL++LDLS N  SG LPS+I++TTEK GLVLLDLSHN FS
Sbjct: 269 LNLSFNGFNYEISPRLMFSEKLVMLDLSHNGFSGRLPSRISETTEKLGLVLLDLSHNSFS 328

Query: 338 GEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQ 397
           G+IPL+ITELKSLQAL LS+NLL G+IPARIGNLTYLQVIDLSHN L+GSIPLNIVGCFQ
Sbjct: 329 GDIPLRITELKSLQALRLSHNLLTGDIPARIGNLTYLQVIDLSHNALTGSIPLNIVGCFQ 388

Query: 398 LLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLS 457
           LLAL+++NNNLSGEIQPELDALDSLKILDISNN ISGEIPLTLAGLKSLEIVD SSNNLS
Sbjct: 389 LLALMISNNNLSGEIQPELDALDSLKILDISNNHISGEIPLTLAGLKSLEIVDISSNNLS 448

Query: 458 GSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDGNFNFSL 517
           G+LN+AITKW+NLKY S+ARNK SG LP+WLF F  IQM+D+S+N+F  FIPD N N S 
Sbjct: 449 GNLNEAITKWSNLKYLSLARNKFSGTLPSWLFKFDKIQMIDYSSNRFSWFIPDDNLN-ST 507

Query: 518 NFNKSDIGRSMPAKSFVLPRSMV-IRISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGTI 576
            F     G     + F  P   V I+IS   +  +ELSF+Y L S VG+DLSDNLLHG I
Sbjct: 508 RFKDFQTGG---GEGFAEPPGKVEIKISAAVVAKDELSFSYNLLSMVGIDLSDNLLHGEI 564

Query: 577 PKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQELTLL 636
           P+ LF+ + +EYLNLS+NFL+GQ+P L +L  L+ALDLSHNSL+GQ+ GNIS+   LTLL
Sbjct: 565 PEALFRQKNIEYLNLSYNFLEGQLPRLEKLPRLKALDLSHNSLSGQVIGNISAPPGLTLL 624

Query: 637 NLSYNSFSGFVPWKQGYQKFPGAFAGNPNLCLESSHGECNRTSLPLVPGKTLREEMTEGP 696
           NLS+N FSG +  K+G  KFPGA AGNP LC+E+   +C+  ++     +  + E+ EGP
Sbjct: 625 NLSHNCFSGIITEKEGLGKFPGALAGNPELCVETPGSKCDPANIDASQEEIYQNELVEGP 684

Query: 697 ISIWAFCLSFFVSFYLGVVALFCSARTRRYILQTKV 732
           ISIW FCLS F+SF  GV+ +FCSAR R YILQTK 
Sbjct: 685 ISIWIFCLSAFISFDFGVLGIFCSARARSYILQTKA 720

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance. Involved in controlling the stem cell population size in shoot and root apical meristems, and during organ development. Promotes the formation of CLV1 multimers.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score =  276 bits (706), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 227/688 (32%), Positives = 334/688 (48%), Gaps = 103/688 (14%)

Query: 56  DPTQKLSSW--VGS--NCTNWTGVACNFQTGHVVSINLTDTSLSGQVHPRLCKLSFLEFL 111
           DP   LS W  +GS  +C NWTG+ C+  TGHVVS++L +  L G + P +  L++L+ L
Sbjct: 44  DPLGVLSDWTIIGSLRHC-NWTGITCD-STGHVVSVSLLEKQLEGVLSPAIANLTYLQVL 101

Query: 112 VLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGN------P 165
            L+SN+FTG+I    G L+ L  L L  N F G +P  I +L+N+  L L+ N      P
Sbjct: 102 DLTSNSFTGKIPAEIGKLTELNQLILYLNYFSGSIPSGIWELKNIFYLDLRNNLLSGDVP 161

Query: 166 E-----------------LGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKH 208
           E                 L G  P  +G+  ++L+    + N   G IP S+  L +L  
Sbjct: 162 EEICKTSSLVLIGFDYNNLTGKIPECLGDL-VHLQMFVAAGNHLTGSIPVSIGTLANLTD 220

Query: 209 LDLEKNNLTGNV-HDF--------------------------YQSLLVLNLGSNRFSGTL 241
           LDL  N LTG +  DF                            SL+ L L  N+ +G +
Sbjct: 221 LDLSGNQLTGKIPRDFGNLLNLQSLVLTENLLEGDIPAEIGNCSSLVQLELYDNQLTGKI 280

Query: 242 PCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLL 301
           P    + + L  L++  N +   IP+ +  L  LTHL LS NHL   IS  + F E L +
Sbjct: 281 PAELGNLVQLQALRIYKNKLTSSIPSSLFRLTQLTHLGLSENHLVGPISEEIGFLESLEV 340

Query: 302 LDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLI 361
           L L  N+ +G  P  I   T    L +L +  N  SGE+P  +  L +L+ L   +NLL 
Sbjct: 341 LTLHSNNFTGEFPQSI---TNLRNLTVLTVGFNNISGELPADLGLLTNLRNLSAHDNLLT 397

Query: 362 GEIPARIGNLTYLQVIDLSHNMLSGSIPL-----------------------NIVGCFQL 398
           G IP+ I N T L+++DLSHN ++G IP                        +I  C  L
Sbjct: 398 GPIPSSISNCTGLKLLDLSHNQMTGEIPRGFGRMNLTFISIGRNHFTGEIPDDIFNCSNL 457

Query: 399 LALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSG 458
             L V +NNL+G ++P +  L  L+IL +S N ++G IP  +  LK L I+   SN  +G
Sbjct: 458 ETLSVADNNLTGTLKPLIGKLQKLRILQVSYNSLTGPIPREIGNLKDLNILYLHSNGFTG 517

Query: 459 SLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIP------DGN 512
            +   ++  T L+   +  N L G +P  +F  + + ++D S NKF G IP      +  
Sbjct: 518 RIPREMSNLTLLQGLRMYSNDLEGPIPEEMFDMKLLSVLDLSNNKFSGQIPALFSKLESL 577

Query: 513 FNFSLNFNKSDIGRSMPA--KSFVLPRSMVIRIS-VTAIDTNELSF---NYQLFSAVGMD 566
              SL  NK     S+PA  KS  L  +  I  + +T     EL     N QL+    ++
Sbjct: 578 TYLSLQGNK--FNGSIPASLKSLSLLNTFDISDNLLTGTIPGELLASLKNMQLY----LN 631

Query: 567 LSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVP-GLYRLRSLRALDLSHNSLTGQIPG 625
            S+NLL GTIPK L +L+ ++ ++LS N   G +P  L   +++  LD S N+L+G IP 
Sbjct: 632 FSNNLLTGTIPKELGKLEMVQEIDLSNNLFSGSIPRSLQACKNVFTLDFSQNNLSGHIPD 691

Query: 626 NI-SSLQELTLLNLSYNSFSGFVPWKQG 652
            +   +  +  LNLS NSFSG +P   G
Sbjct: 692 EVFQGMDMIISLNLSRNSFSGEIPQSFG 719

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8VZG8|Y4885_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=1 SV=3

 Score =  270 bits (689), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 214/695 (30%), Positives = 336/695 (48%), Gaps = 75/695 (10%)

Query: 13  RALKLQMLPLLLFLLLLCSNPSESLELNLEDKASLLLFKSLV--QDPTQKLSSWVGSN-- 68
           +   LQ+L L++ ++L CS    ++   +E+  +LL +KS    Q  + KLSSWV  N  
Sbjct: 24  KPRDLQVL-LIISIVLSCS---FAVSATVEEANALLKWKSTFTNQTSSSKLSSWVNPNTS 79

Query: 69  --CTNWTGVACNFQTGHVVSINLTDTSLSGQVHP-RLCKLSFLEFLVLSSNAFTGRISTC 125
             CT+W GVAC+   G ++ +NLT+T + G         L  L F+ LS N F+G IS  
Sbjct: 80  SFCTSWYGVACSL--GSIIRLNLTNTGIEGTFEDFPFSSLPNLTFVDLSMNRFSGTISPL 137

Query: 126 FGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSM----- 180
           +G  S L+  DLS N+ VG +P  +  L NL  L L  N +L G  P  +G  +      
Sbjct: 138 WGRFSKLEYFDLSINQLVGEIPPELGDLSNLDTLHLVEN-KLNGSIPSEIGRLTKVTEIA 196

Query: 181 ---------------NLEKL---DFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHD 222
                          NL KL       NS  G IP  +  L +L+ L L++NNLTG +  
Sbjct: 197 IYDNLLTGPIPSSFGNLTKLVNLYLFINSLSGSIPSEIGNLPNLRELCLDRNNLTGKIPS 256

Query: 223 FY---QSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLN 279
            +   +++ +LN+  N+ SG +P    +  +L  L L  N + G IP+ + +++ L  L+
Sbjct: 257 SFGNLKNVTLLNMFENQLSGEIPPEIGNMTALDTLSLHTNKLTGPIPSTLGNIKTLAVLH 316

Query: 280 LSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGE 339
           L  N LN  I P L   E ++ L++S N L+GP+P    + T    L L D   N+ SG 
Sbjct: 317 LYLNQLNGSIPPELGEMESMIDLEISENKLTGPVPDSFGKLTALEWLFLRD---NQLSGP 373

Query: 340 IPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLL 399
           IP  I     L  L L  N   G +P  I     L+ + L  N   G +P ++  C  L+
Sbjct: 374 IPPGIANSTELTVLQLDTNNFTGFLPDTICRGGKLENLTLDDNHFEGPVPKSLRDCKSLI 433

Query: 400 ALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGS 459
            +    N+ SG+I        +L  +D+SNN   G++       + L     S+N+++G+
Sbjct: 434 RVRFKGNSFSGDISEAFGVYPTLNFIDLSNNNFHGQLSANWEQSQKLVAFILSNNSITGA 493

Query: 460 LNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDG-----NFN 514
           +   I   T L    ++ N+++G LP  + +   I  +  + N+  G IP G     N  
Sbjct: 494 IPPEIWNMTQLSQLDLSSNRITGELPESISNINRISKLQLNGNRLSGKIPSGIRLLTNLE 553

Query: 515 FSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVGMDLSDNLLHG 574
           + L+ + +     +P     LPR                           M+LS N L  
Sbjct: 554 Y-LDLSSNRFSSEIPPTLNNLPRLYY------------------------MNLSRNDLDQ 588

Query: 575 TIPKGLFQLQGLEYLNLSFNFLDGQVPGLYR-LRSLRALDLSHNSLTGQIPGNISSLQEL 633
           TIP+GL +L  L+ L+LS+N LDG++   +R L++L  LDLSHN+L+GQIP +   +  L
Sbjct: 589 TIPEGLTKLSQLQMLDLSYNQLDGEISSQFRSLQNLERLDLSHNNLSGQIPPSFKDMLAL 648

Query: 634 TLLNLSYNSFSGFVPWKQGYQKF-PGAFAGNPNLC 667
           T +++S+N+  G +P    ++   P AF GN +LC
Sbjct: 649 THVDVSHNNLQGPIPDNAAFRNAPPDAFEGNKDLC 683

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O82318|Y2579_ARATH Probably inactive leucine-rich repeat receptor-like protein kinase At2g25790 OS=Arabidopsis thaliana GN=At2g25790 PE=1 SV=1

 Score =  257 bits (657), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 229/706 (32%), Positives = 343/706 (48%), Gaps = 84/706 (11%)

Query: 24  LFLLLLCSNPSESLELNLEDKASLLLFKSLVQDPTQKLSSWVGSNCTN---WTGVACNFQ 80
           LFL   C + +E LEL       LL FKS +QDP + LSSW  S+  +   W+GV CN  
Sbjct: 20  LFLNFSCLHANE-LEL-------LLSFKSSIQDPLKHLSSWSYSSTNDVCLWSGVVCN-N 70

Query: 81  TGHVVSINLTDTSLSGQV-HPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSG--LKTLDL 137
              VVS++L+  ++SGQ+      +L FL+ + LS+N  +G I       S   L+ L+L
Sbjct: 71  ISRVVSLDLSGKNMSGQILTAATFRLPFLQTINLSNNNLSGPIPHDIFTTSSPSLRYLNL 130

Query: 138 SYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIP 197
           S N F G +P                     G  P        NL  LD S N F GEI 
Sbjct: 131 SNNNFSGSIPR--------------------GFLP--------NLYTLDLSNNMFTGEIY 162

Query: 198 ESLYYLKSLKHLDLEKNNLTGNVHDF---YQSLLVLNLGSNRFSGTLPCFAASAMSLTVL 254
             +    +L+ LDL  N LTG+V  +      L  L L SN+ +G +P       +L  +
Sbjct: 163 NDIGVFSNLRVLDLGGNVLTGHVPGYLGNLSRLEFLTLASNQLTGGVPVELGKMKNLKWI 222

Query: 255 KLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLP 314
            L  N++ G IP  I  L +L HL+L +N+L+  I P L   +KL  + L  N LSG +P
Sbjct: 223 YLGYNNLSGEIPYQIGGLSSLNHLDLVYNNLSGPIPPSLGDLKKLEYMFLYQNKLSGQIP 282

Query: 315 SKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYL 374
             I        L+ LD S N  SGEIP  + +++SL+ L L +N L G+IP  + +L  L
Sbjct: 283 PSIFSL---QNLISLDFSDNSLSGEIPELVAQMQSLEILHLFSNNLTGKIPEGVTSLPRL 339

Query: 375 QVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISG 434
           +V+ L  N  SG IP N+     L  L ++ NNL+G++   L     L  L + +N +  
Sbjct: 340 KVLQLWSNRFSGGIPANLGKHNNLTVLDLSTNNLTGKLPDTLCDSGHLTKLILFSNSLDS 399

Query: 435 EIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAI 494
           +IP +L   +SLE V   +N  SG L    TK   + +  ++ N L GN+  W      +
Sbjct: 400 QIPPSLGMCQSLERVRLQNNGFSGKLPRGFTKLQLVNFLDLSNNNLQGNINTW--DMPQL 457

Query: 495 QMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELS 554
           +M+D S NKF G +PD  F+ S    K D+ R+    S V+P+ ++    +         
Sbjct: 458 EMLDLSVNKFFGELPD--FSRSKRLKKLDLSRN--KISGVVPQGLMTFPEI--------- 504

Query: 555 FNYQLFSAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLY-RLRSLRALD 613
                   + +DLS+N + G IP+ L   + L  L+LS N   G++P  +   + L  LD
Sbjct: 505 --------MDLDLSENEITGVIPRELSSCKNLVNLDLSHNNFTGEIPSSFAEFQVLSDLD 556

Query: 614 LSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVPWKQGYQKFPG-AFAGNPNLCLESSH 672
           LS N L+G+IP N+ +++ L  +N+S+N   G +P+   +      A  GN +LC E+S 
Sbjct: 557 LSCNQLSGEIPKNLGNIESLVQVNISHNLLHGSLPFTGAFLAINATAVEGNIDLCSENSA 616

Query: 673 GECNRTSLPLVPGKTLREEMTEGPISIWAFCLSFFVSFYLGVVALF 718
                    L P K +R+  T+   S W    S F +F   +V+ F
Sbjct: 617 SG-------LRPCKVVRKRSTK---SWWLIITSTFAAFLAVLVSGF 652

Arabidopsis thaliana (taxid: 3702)

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score =  257 bits (656), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 210/633 (33%), Positives = 318/633 (50%), Gaps = 58/633 (9%)

Query: 87  INLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVV 146
           +NL + SL+G++  +L ++S L++L L +N   G I      L  L+TLDLS N   G +
Sbjct: 244 LNLANNSLTGEIPSQLGEMSQLQYLSLMANQLQGLIPKSLADLGNLQTLDLSANNLTGEI 303

Query: 147 PDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSL 206
           P+    +  L +L+L  N  L G  P  + + + NLE+L  S     GEIP  L   +SL
Sbjct: 304 PEEFWNMSQLLDLVLANN-HLSGSLPKSICSNNTNLEQLVLSGTQLSGEIPVELSKCQSL 362

Query: 207 KHLDLEKNNLTGNV----------HDFY-----------------QSLLVLNLGSNRFSG 239
           K LDL  N+L G++           D Y                  +L  L L  N   G
Sbjct: 363 KQLDLSNNSLAGSIPEALFELVELTDLYLHNNTLEGTLSPSISNLTNLQWLVLYHNNLEG 422

Query: 240 TLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKL 299
            LP   ++   L VL L  N   G IP  I +  +L  +++  NH   EI P +   ++L
Sbjct: 423 KLPKEISALRKLEVLFLYENRFSGEIPQEIGNCTSLKMIDMFGNHFEGEIPPSIGRLKEL 482

Query: 300 LLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNL 359
            LL L  N+L G LP+ +    +   L +LDL+ N+ SG IP     LK L+ L L NN 
Sbjct: 483 NLLHLRQNELVGGLPASLGNCHQ---LNILDLADNQLSGSIPSSFGFLKGLEQLMLYNNS 539

Query: 360 LIGEIPARIGNLTYLQVIDLSHNMLSGSI-PLNIVGCFQLLALIVNNNNLSGEIQPELDA 418
           L G +P  + +L  L  I+LSHN L+G+I PL   G    L+  V NN    EI  EL  
Sbjct: 540 LQGNLPDSLISLRNLTRINLSHNRLNGTIHPL--CGSSSYLSFDVTNNGFEDEIPLELGN 597

Query: 419 LDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARN 478
             +L  L +  NQ++G+IP TL  ++ L ++D SSN L+G++   +     L +  +  N
Sbjct: 598 SQNLDRLRLGKNQLTGKIPWTLGKIRELSLLDMSSNALTGTIPLQLVLCKKLTHIDLNNN 657

Query: 479 KLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDGNFNFS----LNFNKSDIGRSMPAKSFV 534
            LSG +P WL     +  +  S+N+F+  +P   FN +    L+ + + +  S+P +   
Sbjct: 658 FLSGPIPPWLGKLSQLGELKLSSNQFVESLPTELFNCTKLLVLSLDGNSLNGSIPQEIGN 717

Query: 535 LPRSMVIRISVTAIDTNELSFNYQLFSAVG-------MDLSDNLLHGTIPKGLFQLQGLE 587
           L       ++V  +D N+  F+  L  A+G       + LS N L G IP  + QLQ L+
Sbjct: 718 LG-----ALNVLNLDKNQ--FSGSLPQAMGKLSKLYELRLSRNSLTGEIPVEIGQLQDLQ 770

Query: 588 -YLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSG 645
             L+LS+N   G +P  +  L  L  LDLSHN LTG++PG++  ++ L  LN+S+N+  G
Sbjct: 771 SALDLSYNNFTGDIPSTIGTLSKLETLDLSHNQLTGEVPGSVGDMKSLGYLNVSFNNLGG 830

Query: 646 FVPWKQGYQKFPG-AFAGNPNLCLESSHGECNR 677
            +  K+ + ++P  +F GN  LC  S    CNR
Sbjct: 831 KL--KKQFSRWPADSFLGNTGLC-GSPLSRCNR 860

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LHP4|RCH2_ARATH Receptor-like protein kinase 2 OS=Arabidopsis thaliana GN=RCH2 PE=1 SV=1

 Score =  253 bits (645), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 204/605 (33%), Positives = 304/605 (50%), Gaps = 52/605 (8%)

Query: 87  INLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVV 146
           ++L+   L G +   L KL  LE L+L+SN  TG+I       S LK+L L  N   G +
Sbjct: 134 LDLSSNGLVGDIPWSLSKLRNLETLILNSNQLTGKIPPDISKCSKLKSLILFDNLLTGSI 193

Query: 147 PDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSL 206
           P  + KL  L  + + GN E+ G  P  +G+ S NL  L  +  S  G +P SL  LK L
Sbjct: 194 PTELGKLSGLEVIRIGGNKEISGQIPSEIGDCS-NLTVLGLAETSVSGNLPSSLGKLKKL 252

Query: 207 KHLDLEKNNLTGNVHDFY---QSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVG 263
           + L +    ++G +         L+ L L  N  SG++P        L  L L  NS+VG
Sbjct: 253 ETLSIYTTMISGEIPSDLGNCSELVDLFLYENSLSGSIPREIGQLTKLEQLFLWQNSLVG 312

Query: 264 GIPTCIASLQALTHLNLSHNHLNYEISP---RLVFFEKLLLLDLSFNDLSGPLPSKIAQT 320
           GIP  I +   L  ++LS N L+  I     RL F E+ ++ D   N  SG +P+ I+  
Sbjct: 313 GIPEEIGNCSNLKMIDLSLNLLSGSIPSSIGRLSFLEEFMISD---NKFSGSIPTTISNC 369

Query: 321 TEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLS 380
           +    LV L L  N+ SG IP ++  L  L   F  +N L G IP  + + T LQ +DLS
Sbjct: 370 SS---LVQLQLDKNQISGLIPSELGTLTKLTLFFAWSNQLEGSIPPGLADCTDLQALDLS 426

Query: 381 HNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTL 440
            N L+G+IP  +     L  L++ +N+LSG I  E+    SL  L +  N+I+GEIP  +
Sbjct: 427 RNSLTGTIPSGLFMLRNLTKLLLISNSLSGFIPQEIGNCSSLVRLRLGFNRITGEIPSGI 486

Query: 441 AGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFS 500
             LK +  +DFSSN L G + D I   + L+   ++ N L G+LPN + S   +Q++D S
Sbjct: 487 GSLKKINFLDFSSNRLHGKVPDEIGSCSELQMIDLSNNSLEGSLPNPVSSLSGLQVLDVS 546

Query: 501 TNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLF 560
            N+F G IP            + +GR +     +L +++               F+  + 
Sbjct: 547 ANQFSGKIP------------ASLGRLVSLNKLILSKNL---------------FSGSIP 579

Query: 561 SAVGM-------DLSDNLLHGTIPKGLFQLQGLEY-LNLSFNFLDGQVPG-LYRLRSLRA 611
           +++GM       DL  N L G IP  L  ++ LE  LNLS N L G++P  +  L  L  
Sbjct: 580 TSLGMCSGLQLLDLGSNELSGEIPSELGDIENLEIALNLSSNRLTGKIPSKIASLNKLSI 639

Query: 612 LDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVPWKQGYQKF-PGAFAGNPNLCLES 670
           LDLSHN L G +   +++++ L  LN+SYNSFSG++P  + +++  P    GN  LC  S
Sbjct: 640 LDLSHNMLEGDL-APLANIENLVSLNISYNSFSGYLPDNKLFRQLSPQDLEGNKKLC-SS 697

Query: 671 SHGEC 675
           +   C
Sbjct: 698 TQDSC 702

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGS2|Y4361_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g36180 OS=Arabidopsis thaliana GN=At4g36180 PE=1 SV=1

 Score =  247 bits (630), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 234/756 (30%), Positives = 343/756 (45%), Gaps = 101/756 (13%)

Query: 46  SLLLFKSLVQDPTQKLSSWVGSNCT---NWTGVACNFQTGH-VVSINLTDTSLSGQVHPR 101
           +L  FK  + DP   L+SW  S      +W GV C   T H V  I L    LSG++  R
Sbjct: 31  ALTAFKLNLHDPLGALTSWDPSTPAAPCDWRGVGC---TNHRVTEIRLPRLQLSGRISDR 87

Query: 102 LCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELIL 161
           +  L  L  L L SN+F G I T     + L ++ L YN   G +P A+  L +L    +
Sbjct: 88  ISGLRMLRKLSLRSNSFNGTIPTSLAYCTRLLSVFLQYNSLSGKLPPAMRNLTSLEVFNV 147

Query: 162 KGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVH 221
            GN  L G  P  VG    +L+ LD S N+F G+IP  L  L  L+ L+L  N LTG + 
Sbjct: 148 AGN-RLSGEIP--VG-LPSSLQFLDISSNTFSGQIPSGLANLTQLQLLNLSYNQLTGEIP 203

Query: 222 DFY---QSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHL 278
                 QSL  L L  N   GTLP   ++  SL  L    N + G IP    +L  L  L
Sbjct: 204 ASLGNLQSLQYLWLDFNLLQGTLPSAISNCSSLVHLSASENEIGGVIPAAYGALPKLEVL 263

Query: 279 NLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPL-PSKIAQTTEKAGLVLLDLSHNRFS 337
           +LS+N+ +  +   L     L ++ L FN  S  + P   A    + GL +LDL  NR S
Sbjct: 264 SLSNNNFSGTVPFSLFCNTSLTIVQLGFNAFSDIVRPETTANC--RTGLQVLDLQENRIS 321

Query: 338 GEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQ 397
           G  PL +T + SL+ L +S NL  GEIP  IGNL  L+ + L++N L+G IP+ I  C  
Sbjct: 322 GRFPLWLTNILSLKNLDVSGNLFSGEIPPDIGNLKRLEELKLANNSLTGEIPVEIKQCGS 381

Query: 398 LLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLS 457
           L  L    N+L G+I   L  + +LK+L +  N  SG +P ++  L+ LE ++   NNL+
Sbjct: 382 LDVLDFEGNSLKGQIPEFLGYMKALKVLSLGRNSFSGYVPSSMVNLQQLERLNLGENNLN 441

Query: 458 GSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDGNFNF-- 515
           GS    +   T+L    ++ N+ SG +P  + +   +  ++ S N F G IP    N   
Sbjct: 442 GSFPVELMALTSLSELDLSGNRFSGAVPVSISNLSNLSFLNLSGNGFSGEIPASVGNLFK 501

Query: 516 --SLNFNKSDIGRSMPAKSFVLPRSMVIR-----------------ISVTAIDTNELSFN 556
             +L+ +K ++   +P +   LP   VI                  +S+  ++ +  SF+
Sbjct: 502 LTALDLSKQNMSGEVPVELSGLPNVQVIALQGNNFSGVVPEGFSSLVSLRYVNLSSNSFS 561

Query: 557 YQLFSAVGM-------DLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRS 608
            ++    G         LSDN + G+IP  +     LE L L  N L G +P  L RL  
Sbjct: 562 GEIPQTFGFLRLLVSLSLSDNHISGSIPPEIGNCSALEVLELRSNRLMGHIPADLSRLPR 621

Query: 609 LRALDL------------------------SHNSLTGQIPGNISSLQELTLLNLSYNSFS 644
           L+ LDL                         HN L+G IPG+ S L  LT ++LS N+ +
Sbjct: 622 LKVLDLGQNNLSGEIPPEISQSSSLNSLSLDHNHLSGVIPGSFSGLSNLTKMDLSVNNLT 681

Query: 645 GFVPWKQG----------------YQKFPGA----------FAGNPNLCLESSHGECNRT 678
           G +P                      + P +          F+GN  LC +  +  C  +
Sbjct: 682 GEIPASLALISSNLVYFNVSSNNLKGEIPASLGSRINNTSEFSGNTELCGKPLNRRCESS 741

Query: 679 SLPLVPGKTLREEMTEGPI--SIWAFCLSFFVSFYL 712
           +     GK  + +M    +  +I AF LS F  FY+
Sbjct: 742 T---AEGKKKKRKMILMIVMAAIGAFLLSLFCCFYV 774

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2

 Score =  244 bits (623), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 206/649 (31%), Positives = 299/649 (46%), Gaps = 86/649 (13%)

Query: 86  SINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGV 145
           ++NL D S SG++  +L  L  +++L L  N   G I      L+ L+TLDLS N   GV
Sbjct: 244 TLNLGDNSFSGEIPSQLGDLVSIQYLNLIGNQLQGLIPKRLTELANLQTLDLSSNNLTGV 303

Query: 146 VPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKS 205
           + +   ++  L  L+L  N  L G  P  + + + +L++L  S     GEIP  +   +S
Sbjct: 304 IHEEFWRMNQLEFLVLAKN-RLSGSLPKTICSNNTSLKQLFLSETQLSGEIPAEISNCQS 362

Query: 206 LKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGI 265
           LK LDL  N LTG + D   SL  L                  + LT L L+NNS+ G +
Sbjct: 363 LKLLDLSNNTLTGQIPD---SLFQL------------------VELTNLYLNNNSLEGTL 401

Query: 266 PTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAG 325
            + I++L  L    L HN+L  ++   + F  KL ++ L  N  SG +P +I   T    
Sbjct: 402 SSSISNLTNLQEFTLYHNNLEGKVPKEIGFLGKLEIMYLYENRFSGEMPVEIGNCTR--- 458

Query: 326 LVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLS 385
           L  +D   NR SGEIP  I  LK L  L L  N L+G IPA +GN   + VIDL+ N LS
Sbjct: 459 LQEIDWYGNRLSGEIPSSIGRLKDLTRLHLRENELVGNIPASLGNCHQMTVIDLADNQLS 518

Query: 386 GSIPLN-----------------------------------------------IVGCFQL 398
           GSIP +                                               + G    
Sbjct: 519 GSIPSSFGFLTALELFMIYNNSLQGNLPDSLINLKNLTRINFSSNKFNGSISPLCGSSSY 578

Query: 399 LALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSG 458
           L+  V  N   G+I  EL    +L  L +  NQ +G IP T   +  L ++D S N+LSG
Sbjct: 579 LSFDVTENGFEGDIPLELGKSTNLDRLRLGKNQFTGRIPRTFGKISELSLLDISRNSLSG 638

Query: 459 SLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDGNFNFSLN 518
            +   +     L +  +  N LSG +P WL     +  +  S+NKF+G +P   F+ +  
Sbjct: 639 IIPVELGLCKKLTHIDLNNNYLSGVIPTWLGKLPLLGELKLSSNKFVGSLPTEIFSLTNI 698

Query: 519 FNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVG-------MDLSDNL 571
                 G S+      +P+ +    ++ A++  E   +  L S +G       + LS N 
Sbjct: 699 LTLFLDGNSLNGS---IPQEIGNLQALNALNLEENQLSGPLPSTIGKLSKLFELRLSRNA 755

Query: 572 LHGTIPKGLFQLQGLE-YLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIPGNISS 629
           L G IP  + QLQ L+  L+LS+N   G++P  +  L  L +LDLSHN L G++PG I  
Sbjct: 756 LTGEIPVEIGQLQDLQSALDLSYNNFTGRIPSTISTLPKLESLDLSHNQLVGEVPGQIGD 815

Query: 630 LQELTLLNLSYNSFSGFVPWKQGYQKFPGAFAGNPNLCLESSHGECNRT 678
           ++ L  LNLSYN+  G +  KQ  +    AF GN  LC  S    CNR 
Sbjct: 816 MKSLGYLNLSYNNLEGKLK-KQFSRWQADAFVGNAGLC-GSPLSHCNRA 862

Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SSL9|PEPR1_ARATH Leucine-rich repeat receptor-like protein kinase PEPR1 OS=Arabidopsis thaliana GN=PEPR1 PE=1 SV=1

 Score =  243 bits (620), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 199/628 (31%), Positives = 295/628 (46%), Gaps = 91/628 (14%)

Query: 57  PTQKLSSWV--GSNCT--NWTGVACNFQTGHVVSINLTDTSLSGQVHPRLCKLSFLEFLV 112
           P Q  S+W    S  T  NW G+ C+  + +V S+N T + +SGQ+ P + +L  L+ L 
Sbjct: 47  PPQVTSTWKINASEATPCNWFGITCD-DSKNVASLNFTRSRVSGQLGPEIGELKSLQILD 105

Query: 113 LSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFP 172
           LS+N F+G I +  G  + L TLDLS N F   +PD +  L+ L  L L           
Sbjct: 106 LSTNNFSGTIPSTLGNCTKLATLDLSENGFSDKIPDTLDSLKRLEVLYLY---------- 155

Query: 173 GWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFY---QSLLV 229
                            N   GE+PESL+ +  L+ L L+ NNLTG +       + L+ 
Sbjct: 156 ----------------INFLTGELPESLFRIPKLQVLYLDYNNLTGPIPQSIGDAKELVE 199

Query: 230 LNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEI 289
           L++ +N+FSG +P    ++ SL +L L  N +VG +P  +  L  LT L + +N L   +
Sbjct: 200 LSMYANQFSGNIPESIGNSSSLQILYLHRNKLVGSLPESLNLLGNLTTLFVGNNSLQGPV 259

Query: 290 SPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVL--------------------- 328
                  + LL LDLS+N+  G +P  +   +    LV+                     
Sbjct: 260 RFGSPNCKNLLTLDLSYNEFEGGVPPALGNCSSLDALVIVSGNLSGTIPSSLGMLKNLTI 319

Query: 329 LDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSI 388
           L+LS NR SG IP ++    SL  L L++N L+G IP+ +G L  L+ ++L  N  SG I
Sbjct: 320 LNLSENRLSGSIPAELGNCSSLNLLKLNDNQLVGGIPSALGKLRKLESLELFENRFSGEI 379

Query: 389 PLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEI 448
           P+ I     L  L+V  NNL+GE+  E+  +  LKI  + NN   G IP  L    SLE 
Sbjct: 380 PIEIWKSQSLTQLLVYQNNLTGELPVEMTEMKKLKIATLFNNSFYGAIPPGLGVNSSLEE 439

Query: 449 VDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFI 508
           VDF  N L+G +   +     L+  ++  N L G +P  +   + I+      N   G +
Sbjct: 440 VDFIGNKLTGEIPPNLCHGRKLRILNLGSNLLHGTIPASIGHCKTIRRFILRENNLSGLL 499

Query: 509 PDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVG---- 564
           P+ + + SL+F                            +D N  +F   +  ++G    
Sbjct: 500 PEFSQDHSLSF----------------------------LDFNSNNFEGPIPGSLGSCKN 531

Query: 565 ---MDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLT 620
              ++LS N   G IP  L  LQ L Y+NLS N L+G +P  L    SL   D+  NSL 
Sbjct: 532 LSSINLSRNRFTGQIPPQLGNLQNLGYMNLSRNLLEGSLPAQLSNCVSLERFDVGFNSLN 591

Query: 621 GQIPGNISSLQELTLLNLSYNSFSGFVP 648
           G +P N S+ + LT L LS N FSG +P
Sbjct: 592 GSVPSNFSNWKGLTTLVLSENRFSGGIP 619

Acts as a receptor for PEP defense peptides. Unlike typical immune receptors, senses an endogenous elicitor that potentiates PAMP-inducible plant responses.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LVP0|Y5639_ARATH Probable leucine-rich repeat receptor-like protein kinase At5g63930 OS=Arabidopsis thaliana GN=At5g63930 PE=1 SV=1

 Score =  243 bits (619), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 211/634 (33%), Positives = 314/634 (49%), Gaps = 33/634 (5%)

Query: 35  ESLELNLEDKASLLLFKSLVQDPTQKLSSWVGSNCT--NWTGVAC-NFQTG-HVVSINLT 90
           E+  LNLE +  LL  KS   D  Q L +W  ++     WTGV C N+ +   V+S+NL+
Sbjct: 23  ETTGLNLEGQY-LLEIKSKFVDAKQNLRNWNSNDSVPCGWTGVMCSNYSSDPEVLSLNLS 81

Query: 91  DTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAI 150
              LSG++ P +  L  L+ L LS N  +G+I    G  S L+ L L+ N+F G +P  I
Sbjct: 82  SMVLSGKLSPSIGGLVHLKQLDLSYNGLSGKIPKEIGNCSSLEILKLNNNQFDGEIPVEI 141

Query: 151 MKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLD 210
            KL +L  LI+  N  + G  P  +GN  ++L +L    N+  G++P S+  LK L    
Sbjct: 142 GKLVSLENLIIYNN-RISGSLPVEIGNL-LSLSQLVTYSNNISGQLPRSIGNLKRLTSFR 199

Query: 211 LEKNNLTGNVHDFY---QSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPT 267
             +N ++G++       +SL++L L  N+ SG LP        L+ + L  N   G IP 
Sbjct: 200 AGQNMISGSLPSEIGGCESLVMLGLAQNQLSGELPKEIGMLKKLSQVILWENEFSGFIPR 259

Query: 268 CIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLV 327
            I++  +L  L L  N L   I   L   + L  L L  N L+G +P +I   +     +
Sbjct: 260 EISNCTSLETLALYKNQLVGPIPKELGDLQSLEFLYLYRNGLNGTIPREIGNLSYA---I 316

Query: 328 LLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGS 387
            +D S N  +GEIPL++  ++ L+ L+L  N L G IP  +  L  L  +DLS N L+G 
Sbjct: 317 EIDFSENALTGEIPLELGNIEGLELLYLFENQLTGTIPVELSTLKNLSKLDLSINALTGP 376

Query: 388 IPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLE 447
           IPL       L  L +  N+LSG I P+L     L +LD+S+N +SG IP  L    ++ 
Sbjct: 377 IPLGFQYLRGLFMLQLFQNSLSGTIPPKLGWYSDLWVLDMSDNHLSGRIPSYLCLHSNMI 436

Query: 448 IVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGF 507
           I++  +NNLSG++   IT    L    +ARN L G  P+ L     +  ++   N+F G 
Sbjct: 437 ILNLGTNNLSGNIPTGITTCKTLVQLRLARNNLVGRFPSNLCKQVNVTAIELGQNRFRGS 496

Query: 508 IPD--GNFNFSLNFNKSDIGRSMPAKSFVLPRS--MVIRISVTAIDTNELS-------FN 556
           IP   GN +       +D G +       LPR   M+ ++    I +N+L+       FN
Sbjct: 497 IPREVGNCSALQRLQLADNGFTGE-----LPREIGMLSQLGTLNISSNKLTGEVPSEIFN 551

Query: 557 YQLFSAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVP-GLYRLRSLRALDLS 615
            ++     +D+  N   GT+P  +  L  LE L LS N L G +P  L  L  L  L + 
Sbjct: 552 CKMLQR--LDMCCNNFSGTLPSEVGSLYQLELLKLSNNNLSGTIPVALGNLSRLTELQMG 609

Query: 616 HNSLTGQIPGNISSLQELTL-LNLSYNSFSGFVP 648
            N   G IP  + SL  L + LNLSYN  +G +P
Sbjct: 610 GNLFNGSIPRELGSLTGLQIALNLSYNKLTGEIP 643

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	732
255543116	730	serine-threonine protein kinase, plant-t	0.995	0.998	0.725	0.0
224128812	725	predicted protein [Populus trichocarpa]	0.950	0.96	0.728	0.0
225431007	740	PREDICTED: leucine-rich repeat receptor-	0.954	0.944	0.695	0.0
307135992	754	serine-threonine protein kinase [Cucumis	0.982	0.953	0.674	0.0
449449617	754	PREDICTED: leucine-rich repeat receptor-	0.957	0.929	0.678	0.0
356530025	717	PREDICTED: leucine-rich repeat receptor-	0.965	0.986	0.663	0.0
449485363	754	PREDICTED: LOW QUALITY PROTEIN: leucine-	0.956	0.928	0.677	0.0
356566941	717	PREDICTED: leucine-rich repeat receptor-	0.965	0.986	0.660	0.0
336088213	724	leucine-rich repeat receptor-like protei	0.952	0.962	0.661	0.0
357507683	719	Receptor-like protein kinase [Medicago t	0.965	0.983	0.654	0.0

>gi|255543116|ref|XP_002512621.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223548582|gb|EEF50073.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score = 1020 bits (2638), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 532/733 (72%), Positives = 620/733 (84%), Gaps = 4/733 (0%)

Query: 1   MELKRDLNVHSCRALKLQMLPLLLFLLLLCSNPSESLELNLEDKASLLLFKSLVQDPTQK 60
           MELK  L +  C+ LKL +L   L  LLLCS  S  ++L+ ED+ASL+ F++ +Q+P + 
Sbjct: 1   MELKWVLAIGHCKILKLHLL-PFLISLLLCSYQSHCIDLHPEDRASLIKFRAHIQEPNRY 59

Query: 61  L-SSWVGSNCTNWTGVACNFQTGHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFT 119
           L S+WVGSNCTNWTG+AC  QTG V+SINLT+ +LSG +HP LC+L  LE LVLS N FT
Sbjct: 60  LLSTWVGSNCTNWTGIACENQTGRVISINLTNMNLSGYIHPNLCRLISLESLVLSENGFT 119

Query: 120 GRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFS 179
           G+I  CFG L  LK LDLS+N+F G VPD +M+L  LREL L GN +LGG  P WVGNFS
Sbjct: 120 GQIPLCFGWLQNLKVLDLSHNRFGGAVPDTLMRLSQLRELNLNGNHDLGGPLPLWVGNFS 179

Query: 180 MNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSG 239
            +LEKLD SFNSF GEIPESL++L SLK+LDL  N L+GN+HDFYQSL+VLNLGSN FSG
Sbjct: 180 SSLEKLDMSFNSFQGEIPESLFHLNSLKYLDLRNNFLSGNLHDFYQSLVVLNLGSNTFSG 239

Query: 240 TLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKL 299
           TLPCF+AS  SL VL L NNS++GGIPTCI+SL+ L HLNLS NHLN+ ISPRLVF E+L
Sbjct: 240 TLPCFSASVQSLNVLNLANNSIMGGIPTCISSLKELRHLNLSFNHLNHAISPRLVFSEEL 299

Query: 300 LLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNL 359
           L LDLSFNDLSGPLP+KIA+TTEK+GLVLLDLSHNRFSG IPLKITELKSLQALFLS+NL
Sbjct: 300 LELDLSFNDLSGPLPTKIAETTEKSGLVLLDLSHNRFSGGIPLKITELKSLQALFLSHNL 359

Query: 360 LIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDAL 419
           L GEIPARIGNLTYLQVIDLSHN LSGSIPLNIVGCFQLLAL++NNNNLSGEIQPELDAL
Sbjct: 360 LSGEIPARIGNLTYLQVIDLSHNSLSGSIPLNIVGCFQLLALVLNNNNLSGEIQPELDAL 419

Query: 420 DSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNK 479
           DSLKILDI+NN+ISGEIPLTLAG +SLEIVDFSSNNLSG+LNDAITKW+NL+Y S+ARNK
Sbjct: 420 DSLKILDINNNKISGEIPLTLAGCRSLEIVDFSSNNLSGNLNDAITKWSNLRYLSLARNK 479

Query: 480 LSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSM 539
            +G+LP+WLF+F AIQ+MDFS NKF GFIPDGNFN SLNFN  DI + +P +SF+L +++
Sbjct: 480 FTGSLPSWLFTFDAIQLMDFSGNKFSGFIPDGNFNISLNFNNGDIVQRLPTESFILLQAV 539

Query: 540 VIRISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQ 599
            I+ISV  +D+NELSF+Y L S VG+DLSDNLLHG IP+ LF LQGLEYLNLS+NFLDG+
Sbjct: 540 EIKISVLVVDSNELSFSYHLSSVVGIDLSDNLLHGEIPESLFGLQGLEYLNLSYNFLDGE 599

Query: 600 VPGLYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVPWKQGYQKFPGA 659
           +PGL ++ SLRALDLSHNSL+GQIPGNISSL+ LTLLNLSYNSFSGFVP K+GY+KFPGA
Sbjct: 600 IPGLEKMSSLRALDLSHNSLSGQIPGNISSLKGLTLLNLSYNSFSGFVPKKEGYRKFPGA 659

Query: 660 FAGNPNLCLESSHGECNRTSLPLVPGKTLREEMTEGPISIWAFCLSFFVSFYLGVVALFC 719
           FAGNP+LC+ESS G C+  SLP VPGK+  EEM EGPIS+W FCL  F+SFY GV+ L C
Sbjct: 660 FAGNPDLCVESSGGRCDAASLPAVPGKS-SEEM-EGPISVWVFCLGAFISFYFGVMVLCC 717

Query: 720 SARTRRYILQTKV 732
           SAR R+YILQTKV
Sbjct: 718 SARARKYILQTKV 730

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224128812|ref|XP_002328973.1| predicted protein [Populus trichocarpa] gi|222839207|gb|EEE77558.1| predicted protein [Populus trichocarpa]

 Score =  987 bits (2552), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 509/699 (72%), Positives = 580/699 (82%), Gaps = 3/699 (0%)

Query: 34  SESLELNLEDKASLLLFKSLVQDPTQKLSSWVGSNCTNWTGVACNFQTGHVVSINLTDTS 93
           S S++LN EDKASLLLF+S +QDP   LS+W GSNCT+WTG+AC   TG V+SINL + +
Sbjct: 30  SASVDLNPEDKASLLLFRSWIQDPVHGLSTWFGSNCTDWTGLACQNHTGQVISINLRNVN 89

Query: 94  LSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKL 153
           LSG +HP LC L FLE LVLS N FTG+I  CFG L  LKTLDLS+N+F GVVPD+++ L
Sbjct: 90  LSGYIHPNLCNLLFLETLVLSENGFTGQIPLCFGRLQNLKTLDLSHNRFGGVVPDSLVTL 149

Query: 154 RNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEK 213
           R L+EL L GN +LGGV P WVGNFS NLE LD  FNSF G IPESL+Y KSLK+LDL  
Sbjct: 150 RQLKELSLNGNHDLGGVVPWWVGNFSSNLEILDLGFNSFHGTIPESLFYCKSLKYLDLGN 209

Query: 214 NNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQ 273
           N L+G++HDF+Q L+ LNL SN  SGTLPCF+AS  SL VL L  NS+VGGIPTCIASL+
Sbjct: 210 NYLSGDLHDFFQPLVFLNLSSNSLSGTLPCFSASIRSLGVLNLARNSIVGGIPTCIASLE 269

Query: 274 ALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSH 333
            LTHLNLS NHLNY ISPRLVF EKLL LDLSFNDLSGPLP+KIA+TTEK+GLVLLDLSH
Sbjct: 270 ELTHLNLSFNHLNYAISPRLVFSEKLLALDLSFNDLSGPLPTKIAETTEKSGLVLLDLSH 329

Query: 334 NRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIV 393
           N FSG IPLKITELKSLQALFLS+NLL GEIPARIGNLTYLQVIDLS N LSGSIPLNIV
Sbjct: 330 NCFSGGIPLKITELKSLQALFLSHNLLTGEIPARIGNLTYLQVIDLSRNSLSGSIPLNIV 389

Query: 394 GCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSS 453
           GCFQLLAL++NNNNLSG+IQPELDALDSLK+LDISNN ISGEIPLTLAG KSLEIVDFSS
Sbjct: 390 GCFQLLALVLNNNNLSGQIQPELDALDSLKVLDISNNGISGEIPLTLAGCKSLEIVDFSS 449

Query: 454 NNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDGNF 513
           NNLSG+LNDAITKW+NL+Y S+ARNK SG+LP+WLF+F+ IQMMDFS NKF GF+PDGNF
Sbjct: 450 NNLSGNLNDAITKWSNLRYLSLARNKFSGSLPSWLFTFEEIQMMDFSGNKFSGFVPDGNF 509

Query: 514 NFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVGMDLSDNLLH 573
           N SL FN  D+ R +PA+ F+  R++ I+ISV  +D +ELSFNY L S  G+DLSDNLLH
Sbjct: 510 NISLEFNNGDV-RRLPAEPFLAIRNIEIKISVLVVDNSELSFNYHLSSTAGIDLSDNLLH 568

Query: 574 GTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQEL 633
           G IP GLF LQGLEYLNLS+NFLDGQVP L ++  LRALDLSHNSL+GQIPGNIS L+EL
Sbjct: 569 GEIPHGLFGLQGLEYLNLSYNFLDGQVPSLEKMERLRALDLSHNSLSGQIPGNISRLKEL 628

Query: 634 TLLNLSYNSFSGFVPWKQGYQKFPGAFAGNPNLCLESSHGECNRTSLPLVPGKTLREEMT 693
            LLN SYNS SGFVP K+GY +FPGAFAGNP+LC+ES   +C+  SLP VPGK+  E  T
Sbjct: 629 VLLNFSYNSLSGFVPQKEGYGRFPGAFAGNPDLCVESPRLKCDSGSLPTVPGKSFEE--T 686

Query: 694 EGPISIWAFCLSFFVSFYLGVVALFCSARTRRYILQTKV 732
           EGPIS+W FC+S FVSFY  VV LFCS R R Y+LQTKV
Sbjct: 687 EGPISVWIFCISAFVSFYFCVVTLFCSTRARSYLLQTKV 725

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225431007|ref|XP_002272643.1| PREDICTED: leucine-rich repeat receptor-like protein CLAVATA2 [Vitis vinifera] gi|297735293|emb|CBI17655.3| unnamed protein product [Vitis vinifera]

 Score =  969 bits (2505), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 486/699 (69%), Positives = 569/699 (81%)

Query: 34  SESLELNLEDKASLLLFKSLVQDPTQKLSSWVGSNCTNWTGVACNFQTGHVVSINLTDTS 93
           S S+ELN + +ASLLLFKS +QDP Q LS+WVG NCT+W G+ C+ QTG ++S+NLT  +
Sbjct: 42  SASVELNPDHQASLLLFKSWLQDPNQALSTWVGFNCTSWAGLTCHNQTGWLISLNLTAIN 101

Query: 94  LSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKL 153
           LSG +HP LC ++ LE LVLS N F G I  CFG + GLKTLDL +N+F G +P   +KL
Sbjct: 102 LSGPLHPMLCMITTLETLVLSRNNFNGTIPQCFGNIWGLKTLDLGFNRFSGDIPGTFVKL 161

Query: 154 RNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEK 213
           R+LREL+L GN  LGG  P W+GNFS  LEKLD S N F G+IP+SL+YL+SL++LDL  
Sbjct: 162 RHLRELLLNGNQGLGGFLPSWIGNFSKKLEKLDLSSNMFRGKIPKSLFYLESLEYLDLGN 221

Query: 214 NNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQ 273
           N L GNV +F+Q L+ LNLGSN  SGTLPCF+AS  SL+VL L NNS+VGGIPTCIASL+
Sbjct: 222 NYLLGNVGEFHQPLVYLNLGSNELSGTLPCFSASVESLSVLNLANNSIVGGIPTCIASLR 281

Query: 274 ALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSH 333
           +L+ LNLS N L YEISPRLVF EKLL+LDLSFNDLSGPLPSKIA+TT+K+GLVLLDLSH
Sbjct: 282 SLSRLNLSSNGLKYEISPRLVFSEKLLVLDLSFNDLSGPLPSKIAETTDKSGLVLLDLSH 341

Query: 334 NRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIV 393
           N+ SGEIP +ITELKSLQALFLS+NLL GEIPARIGNLTYLQVIDLSHN LSGSIP NIV
Sbjct: 342 NQVSGEIPSRITELKSLQALFLSHNLLTGEIPARIGNLTYLQVIDLSHNSLSGSIPSNIV 401

Query: 394 GCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSS 453
           GCFQLLALI+N+NNL GEIQPELDALDSLKILDISNN+ISGEIPLTLAG KSLE+VDFS 
Sbjct: 402 GCFQLLALILNDNNLYGEIQPELDALDSLKILDISNNKISGEIPLTLAGCKSLEVVDFSC 461

Query: 454 NNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDGNF 513
           NNLSG+LNDAITKW NL++ S+ARNK +G LPNWLF+FQ +Q MD S N+F GFIPDGNF
Sbjct: 462 NNLSGALNDAITKWQNLRFLSLARNKFNGALPNWLFTFQMMQAMDLSGNRFSGFIPDGNF 521

Query: 514 NFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVGMDLSDNLLH 573
           N SLNFN +DIG   P +  +  +   I+   T   +NELSFNY LFS VG+DLS NLLH
Sbjct: 522 NISLNFNYNDIGPRTPEEPLITIQDPEIKAFATVAGSNELSFNYDLFSTVGIDLSGNLLH 581

Query: 574 GTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQEL 633
           G IP GLF LQGLEYLNLS+NFLDGQ+PGL +++ LR LDLSHNSL+GQIP NISSL+ L
Sbjct: 582 GEIPAGLFGLQGLEYLNLSYNFLDGQIPGLEKMQRLRILDLSHNSLSGQIPENISSLRNL 641

Query: 634 TLLNLSYNSFSGFVPWKQGYQKFPGAFAGNPNLCLESSHGECNRTSLPLVPGKTLREEMT 693
           TLLNLSYN FSG VP +QGY +FPGAFAGNP LC+ESS G+C   S+P VP K  +EEM 
Sbjct: 642 TLLNLSYNCFSGIVPKEQGYWRFPGAFAGNPGLCVESSGGKCEMASIPTVPAKAFKEEME 701

Query: 694 EGPISIWAFCLSFFVSFYLGVVALFCSARTRRYILQTKV 732
           +GPIS+W F +S  VSFY GVV++FCSAR R YI+QTKV
Sbjct: 702 DGPISVWVFGVSAIVSFYSGVVSMFCSARARNYIMQTKV 740

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|307135992|gb|ADN33850.1| serine-threonine protein kinase [Cucumis melo subsp. melo]

 Score =  936 bits (2418), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 487/722 (67%), Positives = 577/722 (79%), Gaps = 3/722 (0%)

Query: 11  SCRALKLQMLPLLLFLLLLCSNPSESLELNLEDKASLLLFKSLVQDPTQKLSSWVGSNCT 70
           S ++L    L LL FLL+ C NPS+S EL+ ED+ASLL FKS +QDP + LSSWVGSNC+
Sbjct: 36  SSKSLDYHAL-LLSFLLIFCLNPSQSAELDPEDEASLLAFKSSIQDPNKNLSSWVGSNCS 94

Query: 71  NWTGVACNFQTGHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLS 130
           +W G+AC  +TG VVSI LTD +LSGQ++   C LSFLE LVLS N F+  I +C G L 
Sbjct: 95  DWAGIACENKTGRVVSIKLTDMNLSGQINSGFCNLSFLEHLVLSQNNFSCSIPSCLGNLI 154

Query: 131 GLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFN 190
            L+T+DLS N+F GVVP+ +MKL NL ELIL GN +LGG  P W+GNFS  L+KLD  FN
Sbjct: 155 RLRTVDLSRNRFRGVVPETLMKLENLEELILVGNQDLGGPIPSWIGNFSTKLQKLDLGFN 214

Query: 191 SFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMS 250
           SF GE+PESL    SLKHLDL+ N L GNV+DF Q L+ LNL SNRFSGTLPCF+A   S
Sbjct: 215 SFSGEMPESLLNSTSLKHLDLQNNYLKGNVYDFLQPLVSLNLMSNRFSGTLPCFSACTRS 274

Query: 251 LTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLS 310
           LTVL L NNS+ GG+PTCIASL+AL  LNLS NHL Y++SPRL+F E+LL+LDLS NDL 
Sbjct: 275 LTVLNLANNSIFGGVPTCIASLRALVQLNLSSNHLTYKMSPRLLFAEQLLVLDLSNNDLY 334

Query: 311 GPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGN 370
           GPLPS I +T EK+GLVLLDLSHNRFSG IP KITEL+SLQALFLS+NLL+GEIPARIGN
Sbjct: 335 GPLPSMIVETIEKSGLVLLDLSHNRFSGGIPSKITELRSLQALFLSHNLLVGEIPARIGN 394

Query: 371 LTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNN 430
           LTYLQVIDLS+N LSGSIPLNIVGCFQLLALI+NNNNLSGEIQPELDALDSLKILDISNN
Sbjct: 395 LTYLQVIDLSYNYLSGSIPLNIVGCFQLLALILNNNNLSGEIQPELDALDSLKILDISNN 454

Query: 431 QISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFS 490
            ISGE+PLTLAG KSLEIVDFSSNNLSG+LNDAITKW+NL+Y S+ARNK  GNLP+WLF+
Sbjct: 455 MISGEVPLTLAGCKSLEIVDFSSNNLSGNLNDAITKWSNLRYLSLARNKFIGNLPSWLFA 514

Query: 491 FQAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDT 550
           F+ IQ+MDFS+NKF G IPD NFN S NFN  DI R    + F   + +  ++S      
Sbjct: 515 FEVIQLMDFSSNKFSGPIPDVNFNISSNFNSGDISRP-SNEPFAAKKVVNFKVSTVVDVG 573

Query: 551 NELSFNYQLFSAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLR 610
           +EL FNY L SAVG+DLS+NLLHG+IP+GL+ L+GL+YLNLS+N L+GQVPGL +++S+R
Sbjct: 574 SELQFNYDLSSAVGIDLSNNLLHGSIPEGLYSLEGLQYLNLSYNSLEGQVPGLEKMQSVR 633

Query: 611 ALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVPWKQGYQKFPGAFAGNPNLCLES 670
           ALDLSHN L+G+IPGNIS L++LTLL+LSYN FSG V  KQG+ +FPGAFAGNP+LC+ES
Sbjct: 634 ALDLSHNYLSGEIPGNISILEDLTLLDLSYNCFSGLVSEKQGFGRFPGAFAGNPDLCVES 693

Query: 671 SHGECNRTSLPLVPGKTLREEMTEGPISIWAFCLSFFVSFYLGVVALFCSARTRRYILQT 730
           S   C  + +P VPGK + +  TEGPIS+W FCLS F+SFY G V+L CSAR R Y L T
Sbjct: 694 SGEGCRSSGIPTVPGK-ISDGETEGPISVWIFCLSAFISFYFGTVSLLCSARARNYFLHT 752

Query: 731 KV 732
           K 
Sbjct: 753 KA 754

Source: Cucumis melo subsp. melo

Species: Cucumis melo

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449449617|ref|XP_004142561.1| PREDICTED: leucine-rich repeat receptor-like protein CLAVATA2-like [Cucumis sativus]

 Score =  924 bits (2388), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 477/703 (67%), Positives = 566/703 (80%), Gaps = 2/703 (0%)

Query: 30  CSNPSESLELNLEDKASLLLFKSLVQDPTQKLSSWVGSNCTNWTGVACNFQTGHVVSINL 89
           C NPS S+EL+ ED+ASLL FKS +QDP + LSSWVGSNC++W G+AC  +TG VVSI L
Sbjct: 54  CFNPSHSVELDPEDEASLLAFKSSLQDPNKNLSSWVGSNCSDWAGIACENKTGRVVSIKL 113

Query: 90  TDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDA 149
           T+ +LSGQ++   C LSFLE LVLS N F+  I +C G L  L+T+DLS N+F GVVP+ 
Sbjct: 114 TEMNLSGQINSGFCNLSFLEHLVLSQNNFSCSIPSCLGNLIRLRTVDLSRNRFRGVVPET 173

Query: 150 IMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHL 209
           +MKL NL EL+L GN +LGG  P W+GNFS  L+KLD  FNSF GE+PESL    SLKHL
Sbjct: 174 LMKLENLEELVLVGNQDLGGPIPSWIGNFSTKLQKLDLGFNSFSGELPESLLNSTSLKHL 233

Query: 210 DLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCI 269
           DL+ N L GNV+DF+Q L+ LNL SNRFSGTLPCF+A   SLTVL L NNS+ GG+PTCI
Sbjct: 234 DLQNNYLKGNVYDFHQPLVSLNLMSNRFSGTLPCFSACTRSLTVLNLANNSIFGGVPTCI 293

Query: 270 ASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLL 329
           ASL+AL  LNLS NHL Y++SPRL+F E+LL+LDLS NDL GPLPS I +T EK+GLVLL
Sbjct: 294 ASLRALVQLNLSSNHLTYKMSPRLLFAEQLLVLDLSNNDLYGPLPSMIVETIEKSGLVLL 353

Query: 330 DLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIP 389
           DLSHNRFSG IP KITEL+SLQALFLS+NLL+GEIPARIGNLTYLQVIDLS+N LSGSIP
Sbjct: 354 DLSHNRFSGGIPSKITELRSLQALFLSHNLLVGEIPARIGNLTYLQVIDLSYNYLSGSIP 413

Query: 390 LNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIV 449
           LNIVGCFQLLALI+NNNNLSGEIQPELDALDSLKILDISNN ISGE+PLTLAG KSLEIV
Sbjct: 414 LNIVGCFQLLALILNNNNLSGEIQPELDALDSLKILDISNNMISGEVPLTLAGCKSLEIV 473

Query: 450 DFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIP 509
           DFSSNNLSG+LNDAITKW+NL+Y S+ARNK  GNLP+WLF+F+ IQ+MDFS+NKF G IP
Sbjct: 474 DFSSNNLSGNLNDAITKWSNLRYLSLARNKFIGNLPSWLFAFEVIQLMDFSSNKFSGPIP 533

Query: 510 DGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVGMDLSD 569
           D NFN S NFN  D  R    ++F     +  ++S      +EL FNY L SAVG+DLS+
Sbjct: 534 DVNFNISSNFNSGDTSRP-SNEAFATKEVVNFKVSTVVDVGSELQFNYDLSSAVGIDLSN 592

Query: 570 NLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNISS 629
           NLLHG+IP+GL+ L+GL+YLNLS+N L+GQVPGL +++S+RALDLSHN L+G+IPGNIS 
Sbjct: 593 NLLHGSIPEGLYSLEGLQYLNLSYNSLEGQVPGLEKMQSIRALDLSHNYLSGEIPGNISI 652

Query: 630 LQELTLLNLSYNSFSGFVPWKQGYQKFPGAFAGNPNLCLESSHGECNRTSLPLVPGKTLR 689
           L++LTLL+LSYN FSG V  KQG+ +FPGAFAGNP+LC+ESS   C  + +P VPGK + 
Sbjct: 653 LEDLTLLDLSYNCFSGLVSEKQGFGRFPGAFAGNPDLCVESSGEGCRSSGIPTVPGK-IS 711

Query: 690 EEMTEGPISIWAFCLSFFVSFYLGVVALFCSARTRRYILQTKV 732
           +  TEGPIS+W FCLS FVSFY G V+L CSAR R Y L TK 
Sbjct: 712 DGETEGPISVWIFCLSAFVSFYFGTVSLLCSARARNYFLHTKA 754

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356530025|ref|XP_003533585.1| PREDICTED: leucine-rich repeat receptor-like protein CLAVATA2-like [Glycine max]

 Score =  922 bits (2384), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 471/710 (66%), Positives = 557/710 (78%), Gaps = 3/710 (0%)

Query: 23  LLFLLLLCSNPSESLELNLEDKASLLLFKSLVQDPTQKLSSWVGSNCTNWTGVACNFQTG 82
           LL ++LL + PS S++++ +D+ SL LF+S + +P Q L SWVGSNCT+W+G+ C+ +TG
Sbjct: 11  LLCMILLFATPSLSIDVHPQDRISLSLFRSSLPNPNQSLPSWVGSNCTSWSGITCDSRTG 70

Query: 83  HVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKF 142
            V+SINLT  +LSG++HP LC LS+L  L LS N FT  +  CFG L  L+ +DLS+N+F
Sbjct: 71  RVLSINLTSMNLSGKIHPSLCHLSYLNKLGLSHNNFTAPLPECFGNLLNLRAIDLSHNRF 130

Query: 143 VGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYY 202
            G +PD+ M+LR+L EL+  GNP LGG  P W+GNFS NLEKL   F SF G IPESL Y
Sbjct: 131 HGGIPDSFMRLRHLTELVFSGNPGLGGPLPAWIGNFSANLEKLHLGFCSFSGGIPESLLY 190

Query: 203 LKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVV 262
           +KSLK+LDLE N L GN+ DF Q L++LNL SN+F+GTLPCFAAS  SLTVL L NNS+ 
Sbjct: 191 MKSLKYLDLENNLLFGNLVDFQQPLVLLNLASNQFAGTLPCFAASVQSLTVLNLSNNSIA 250

Query: 263 GGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTE 322
           GG+P CIAS QALTHLNLS NHL Y I PRLVF EKLL+LDLS N LSGP+PSKIA+TT+
Sbjct: 251 GGLPACIASFQALTHLNLSGNHLKYRIYPRLVFSEKLLVLDLSNNALSGPIPSKIAETTD 310

Query: 323 KAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHN 382
           K GLVLLDLSHN+FSGEIP+KITELKSLQALFLS+NLL GEIPARIGNLTYLQVIDLSHN
Sbjct: 311 KLGLVLLDLSHNQFSGEIPVKITELKSLQALFLSHNLLSGEIPARIGNLTYLQVIDLSHN 370

Query: 383 MLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAG 442
            LSG+IP +IVGCFQL ALI+NNNNLSG IQPE DALD L+ILDISNN+ SG IPLTLAG
Sbjct: 371 SLSGTIPFSIVGCFQLYALILNNNNLSGVIQPEFDALDILRILDISNNRFSGAIPLTLAG 430

Query: 443 LKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTN 502
            KSLEIVDFSSN LSGSLNDAITKWTNL+Y S+A+NK S NLP+WLF+F AI+MMDFS N
Sbjct: 431 CKSLEIVDFSSNELSGSLNDAITKWTNLRYLSLAQNKFSENLPSWLFTFNAIEMMDFSHN 490

Query: 503 KFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSA 562
           KF GFIPD NF  SL FN  ++    P    V  R + +R+S    D+N+LSF Y L S 
Sbjct: 491 KFTGFIPDINFKGSLIFNTRNVTVKEP---LVAARKVQLRVSAVVSDSNQLSFTYDLSSM 547

Query: 563 VGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQ 622
           VG+DLS N LHG IP+GLF L GLEYLNLS NFL GQ+PGL +++SL+ALDLSHNSL+G 
Sbjct: 548 VGIDLSSNSLHGEIPRGLFGLSGLEYLNLSCNFLYGQLPGLQKMQSLKALDLSHNSLSGH 607

Query: 623 IPGNISSLQELTLLNLSYNSFSGFVPWKQGYQKFPGAFAGNPNLCLESSHGECNRTSLPL 682
           IPGNIS LQ+L++LNLSYN FSG VP KQGY +FPGAFAGNP+LC+ESS G C+      
Sbjct: 608 IPGNISILQDLSILNLSYNCFSGCVPQKQGYGRFPGAFAGNPDLCMESSSGLCDDGRTQS 667

Query: 683 VPGKTLREEMTEGPISIWAFCLSFFVSFYLGVVALFCSARTRRYILQTKV 732
             G T RE+  + PIS+  F +S FVSF  GVV LFCSAR R YILQTKV
Sbjct: 668 AQGSTFREDRMDDPISVGIFFISAFVSFDFGVVVLFCSARARNYILQTKV 717

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449485363|ref|XP_004157145.1| PREDICTED: LOW QUALITY PROTEIN: leucine-rich repeat receptor-like protein CLAVATA2-like [Cucumis sativus]

 Score =  922 bits (2383), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 477/704 (67%), Positives = 567/704 (80%), Gaps = 4/704 (0%)

Query: 30  CSNPSESLELNLEDKASLLLFKSLVQDPTQKLSSWVGSNCTNWTGVACNFQTGHVVSINL 89
           C NPS S+EL+ ED+ASLL FKS +QDP + LSSWVGSNC++W G+AC  +TG VVSI L
Sbjct: 54  CFNPSHSVELDPEDEASLLAFKSSLQDPNKNLSSWVGSNCSDWAGIACENKTGRVVSIKL 113

Query: 90  TDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDA 149
           T+ +LSGQ++   C LSFLE LVLS N F+  I +C G L  L+T+DLS N+F GVVP+ 
Sbjct: 114 TEMNLSGQINSGFCNLSFLEHLVLSQNNFSCSIPSCLGNLIRLRTVDLSRNRFRGVVPET 173

Query: 150 IMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHL 209
           +MKL NL EL+L GN + GG  P W+GNFS  L+KLD  FNSF GE+PESL    SLKHL
Sbjct: 174 LMKLENLEELVLVGNQDXGGPIPSWIGNFSTKLQKLDLGFNSFSGELPESLLNSTSLKHL 233

Query: 210 DLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCI 269
           DL+ N L GNV+DF+Q L+ LNL SNRFSGTLPCF+A   SLTVL L NNS+ GG+PTCI
Sbjct: 234 DLQNNYLKGNVYDFHQPLVSLNLMSNRFSGTLPCFSACTRSLTVLNLANNSIFGGVPTCI 293

Query: 270 ASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLL 329
           ASL+AL  LNLS NHL Y++SPRL+F E+LL+LDLS NDL GPLPS I +T EK+GLVLL
Sbjct: 294 ASLRALVQLNLSSNHLTYKMSPRLLFAEQLLVLDLSNNDLYGPLPSMIVETIEKSGLVLL 353

Query: 330 DLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIP 389
           DLSHNRFSG IP KITEL+SLQALFLS+NLL+GEIPARIGNLTYLQVIDLS+N LSGSIP
Sbjct: 354 DLSHNRFSGGIPSKITELRSLQALFLSHNLLVGEIPARIGNLTYLQVIDLSYNYLSGSIP 413

Query: 390 LNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIV 449
           LNIVGCFQLLALI+NNNNLSGEIQPELDALDSLKILDISNN ISGE+PLTLAG KSLEIV
Sbjct: 414 LNIVGCFQLLALILNNNNLSGEIQPELDALDSLKILDISNNMISGEVPLTLAGCKSLEIV 473

Query: 450 DFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIP 509
           DFSSNNLSG+LNDAITKW+NL+Y S+ARNK  GNLP+WLF+F+ IQ+MDFS+NKF G IP
Sbjct: 474 DFSSNNLSGNLNDAITKWSNLRYLSLARNKFIGNLPSWLFAFEVIQLMDFSSNKFSGPIP 533

Query: 510 DGNFNFSLNFNKSDIGRSMPA-KSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVGMDLS 568
           D NFN S NFN  D  R  P+ ++F     +  ++S      +EL FNY L SAVG+DLS
Sbjct: 534 DVNFNISSNFNSGDTSR--PSNEAFATKEVVNFKVSTVVDVGSELQFNYDLSSAVGIDLS 591

Query: 569 DNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNIS 628
           +NLLHG+IP+GL+ L+GL+YLNLS+N L+GQVPGL +++S+RALDLSHN L+G+IPGNIS
Sbjct: 592 NNLLHGSIPEGLYSLEGLQYLNLSYNSLEGQVPGLEKMQSIRALDLSHNYLSGEIPGNIS 651

Query: 629 SLQELTLLNLSYNSFSGFVPWKQGYQKFPGAFAGNPNLCLESSHGECNRTSLPLVPGKTL 688
            L++LTLL+LSYN FSG V  KQG+ +FPGAFAGNP+LC+ESS   C  + +P VPGK +
Sbjct: 652 ILEDLTLLDLSYNCFSGLVSEKQGFGRFPGAFAGNPDLCVESSGEGCRSSGIPTVPGK-I 710

Query: 689 REEMTEGPISIWAFCLSFFVSFYLGVVALFCSARTRRYILQTKV 732
            +  TEGPIS+W FCLS FVSFY G V+L CSAR R Y L TK 
Sbjct: 711 SDGETEGPISVWIFCLSAFVSFYFGTVSLLCSARARNYFLHTKA 754

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356566941|ref|XP_003551683.1| PREDICTED: leucine-rich repeat receptor-like protein CLAVATA2-like [Glycine max]

 Score =  906 bits (2342), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 469/710 (66%), Positives = 560/710 (78%), Gaps = 3/710 (0%)

Query: 23  LLFLLLLCSNPSESLELNLEDKASLLLFKSLVQDPTQKLSSWVGSNCTNWTGVACNFQTG 82
           LL ++LL + PS S++++ +D+ SL +F+S + +P Q L SWVGSNCT+W+G+ C+ +TG
Sbjct: 11  LLCVILLFATPSHSIDVHPQDRISLSMFRSSLPNPNQSLPSWVGSNCTSWSGITCDNRTG 70

Query: 83  HVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKF 142
            V+SINLT  +LSG++HP LC LS+L  L LS N FT  +  CFG L  L+ +DLS+N+ 
Sbjct: 71  RVLSINLTSMNLSGKIHPSLCYLSYLNKLGLSHNNFTSPLPECFGNLLNLRAIDLSHNRL 130

Query: 143 VGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYY 202
            G +PD+ M+LR+L EL+L GNP+LGG  P W+GNFS NLE+L   F SF G IPESL Y
Sbjct: 131 HGGIPDSFMRLRHLTELVLSGNPDLGGPLPAWIGNFSANLERLHLGFCSFSGGIPESLLY 190

Query: 203 LKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVV 262
           LKSLK+LDLE N L+GN+ +F Q L++LNL SN+F+GTLPCFAAS  SLTVL L NNS+V
Sbjct: 191 LKSLKYLDLENNLLSGNLVNFQQPLVLLNLASNQFAGTLPCFAASVQSLTVLNLSNNSIV 250

Query: 263 GGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTE 322
           GG+P CIAS QALTHLNLS NHL Y I PRLVF EKLL+LDLS N LSGP+P KIA+TTE
Sbjct: 251 GGLPACIASFQALTHLNLSGNHLKYRIYPRLVFSEKLLVLDLSNNALSGPIPCKIAETTE 310

Query: 323 KAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHN 382
           K GLVLLDLSHN+FSGEIP+KITELKSLQALFLS+NLL GEIPARIGNLTYLQVIDLSHN
Sbjct: 311 KLGLVLLDLSHNQFSGEIPVKITELKSLQALFLSHNLLSGEIPARIGNLTYLQVIDLSHN 370

Query: 383 MLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAG 442
            LSG+IP +IVGCFQL ALI+ NNNLSG IQPE DALD L+ILDISNN+ SG IPLTLAG
Sbjct: 371 SLSGTIPFSIVGCFQLYALILTNNNLSGVIQPEFDALDILRILDISNNRFSGAIPLTLAG 430

Query: 443 LKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTN 502
            KSLEIVDFSSN LSGSLNDAITKWTNL+Y S+A+NK SGNLP+WLF+F AI+MMDFS N
Sbjct: 431 CKSLEIVDFSSNELSGSLNDAITKWTNLRYLSLAQNKFSGNLPSWLFTFNAIEMMDFSHN 490

Query: 503 KFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSA 562
           KF GFIPD NF  SL FN  ++    P    V  R + +R+S    D+N+LSF Y L S 
Sbjct: 491 KFTGFIPDINFKGSLIFNTRNVTVKEP---LVAARKVQLRVSAVVSDSNQLSFTYDLSSM 547

Query: 563 VGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQ 622
           VG+DLS N LHG IP+GLF L GLEYLNLS NFL GQ+PGL ++ SL+ALDLSHNSL+G 
Sbjct: 548 VGIDLSSNSLHGEIPRGLFGLAGLEYLNLSCNFLYGQLPGLQKMHSLKALDLSHNSLSGH 607

Query: 623 IPGNISSLQELTLLNLSYNSFSGFVPWKQGYQKFPGAFAGNPNLCLESSHGECNRTSLPL 682
           IPGNISSLQ+L++LNLSYN FSG+VP KQGY +FPGAFAGNP+LC+E+S G C+      
Sbjct: 608 IPGNISSLQDLSILNLSYNCFSGYVPQKQGYGRFPGAFAGNPDLCMETSSGVCDDGRTQS 667

Query: 683 VPGKTLREEMTEGPISIWAFCLSFFVSFYLGVVALFCSARTRRYILQTKV 732
             G +  E+  +GPIS+  F +S FVSF  GVV LFCSAR R YILQTKV
Sbjct: 668 AQGSSFSEDRMDGPISVGIFFISAFVSFDFGVVVLFCSARARNYILQTKV 717

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|336088213|dbj|BAK39955.1| leucine-rich repeat receptor-like protein [Lotus japonicus]

 Score =  904 bits (2337), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 463/700 (66%), Positives = 553/700 (79%), Gaps = 3/700 (0%)

Query: 33  PSESLELNLEDKASLLLFKSLVQDPTQKLSSWVGSNCTNWTGVACNFQTGHVVSINLTDT 92
           PS S++++ +DKASLL F++ +Q P Q L +WVGSNC+ W G+ C+  TG V+SINLT+ 
Sbjct: 28  PSNSIDIHPQDKASLLKFRAWLQYPNQSLPNWVGSNCSTWNGITCDNSTGRVISINLTNM 87

Query: 93  SLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMK 152
           +LS Q+HP  C LS+L  +VLS N FT  +  CFG L  LK +DLS+N+F G +PD+ M+
Sbjct: 88  NLSSQIHPSFCNLSYLNKVVLSHNNFTCPLPVCFGNLLNLKAIDLSHNQFHGGIPDSFMR 147

Query: 153 LRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLE 212
           L++L EL+L GNP+LGG  P W+GNFS NLE+L   F+S  G IPESL YLKSLK+LDLE
Sbjct: 148 LKHLTELVLSGNPDLGGPLPSWIGNFSANLERLHLGFSSLSGVIPESLLYLKSLKYLDLE 207

Query: 213 KNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASL 272
            N L+GN+ DF+Q L+ LNL SN+ SGTLPCFAAS  SLTVL L NNS+VGG+P C+AS 
Sbjct: 208 DNLLSGNLVDFHQPLVFLNLASNQLSGTLPCFAASVQSLTVLNLSNNSIVGGLPACVASF 267

Query: 273 QALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLS 332
           QALTHLNLS NHL Y I PRLVF EKLL+LDLS ND SGP+PSKIA+TTEK GLVLLDLS
Sbjct: 268 QALTHLNLSGNHLKYRIYPRLVFSEKLLVLDLSNNDFSGPIPSKIAETTEKLGLVLLDLS 327

Query: 333 HNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNI 392
           HN+FSGEIP+KITELKSLQALFLS+NLL GEIPARIGNLTYLQVIDLSHN LSG+IP +I
Sbjct: 328 HNQFSGEIPVKITELKSLQALFLSHNLLSGEIPARIGNLTYLQVIDLSHNSLSGTIPFSI 387

Query: 393 VGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFS 452
           VGCFQL ALI+NNNNLSG IQPE DALD L+ILDISNN  SG IPLTLAG KSLEIVDF 
Sbjct: 388 VGCFQLYALILNNNNLSGVIQPEFDALDILRILDISNNGFSGAIPLTLAGCKSLEIVDFR 447

Query: 453 SNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDGN 512
           SN+LSGSLNDAITKWTNL+Y S+A NK SG+LP+WLF+F++I+ MDFS NKF GFIPD N
Sbjct: 448 SNDLSGSLNDAITKWTNLRYLSLAENKFSGDLPSWLFTFESIETMDFSHNKFSGFIPDIN 507

Query: 513 FNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVGMDLSDNLL 572
           F  SL FN  ++    P  +   P+   +R+S    D+N+LSF Y L S VG+DLS NLL
Sbjct: 508 FKGSLIFNTRNVTVKEPLAA---PKEFQLRVSAVVSDSNQLSFTYDLSSMVGIDLSSNLL 564

Query: 573 HGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQE 632
           HG IP+GLF L  LEY+NLS+NFLDGQ+PGL +++SL+ALDLSHNSL+G IPGNIS+LQ 
Sbjct: 565 HGEIPRGLFGLTSLEYMNLSYNFLDGQLPGLQKMQSLKALDLSHNSLSGHIPGNISTLQG 624

Query: 633 LTLLNLSYNSFSGFVPWKQGYQKFPGAFAGNPNLCLESSHGECNRTSLPLVPGKTLREEM 692
           L +LNLSYN FSG+VP KQGY +FPGAFAGNP+LCLESS+G C+    P   G +  E+ 
Sbjct: 625 LAVLNLSYNCFSGYVPQKQGYGRFPGAFAGNPDLCLESSNGICDGGRTPSARGTSFGEDG 684

Query: 693 TEGPISIWAFCLSFFVSFYLGVVALFCSARTRRYILQTKV 732
            +GPIS+  F +S FVSF  GVV LFCSAR R YIL TKV
Sbjct: 685 MDGPISVGIFFISAFVSFDFGVVVLFCSARARNYILHTKV 724

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357507683|ref|XP_003624130.1| Receptor-like protein kinase [Medicago truncatula] gi|355499145|gb|AES80348.1| Receptor-like protein kinase [Medicago truncatula]

 Score =  894 bits (2309), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 465/711 (65%), Positives = 555/711 (78%), Gaps = 4/711 (0%)

Query: 23  LLFLLLLCSNPSESLELNLEDKASLLLFKSLVQDPTQKLSSWVGSNCTNWTGVACNFQTG 82
           L +L+L C   S S++++ +DK SLLLFKS + DP+Q L++WVGSNCT W G+ C   TG
Sbjct: 12  LFYLILHCVTLSHSIDIHPQDKKSLLLFKSSLHDPSQSLTNWVGSNCTTWVGITCENTTG 71

Query: 83  HVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKF 142
            VVSINL   +LSGQ+HP  C L +LE +  S N FT  +  CFG L  L+ +DLS+N+F
Sbjct: 72  RVVSINLNSMNLSGQIHPNFCNLLYLEKVDFSHNNFTCTLPVCFGDLLNLRVIDLSHNRF 131

Query: 143 VGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYY 202
            G +P++ M+L++L EL+L  NP LGG+ P W+GNFS NLE++   + SF G IPESL Y
Sbjct: 132 HGGIPNSFMRLKHLTELVLNENPPLGGLLPFWIGNFSANLERVQLGYCSFSGSIPESLLY 191

Query: 203 LKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVV 262
           LKSLK+LDL  N L+GN+ DF QS + LNLGSN+F+GTLPCFAAS  SLTVL L NNS+V
Sbjct: 192 LKSLKYLDLGSNLLSGNLVDFQQSFVFLNLGSNQFTGTLPCFAASVQSLTVLNLSNNSIV 251

Query: 263 GGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTE 322
           GG+P CIA+ QALTHLNLS NHL Y I  RLVF EKL++LDLS N+LSGP+PSKIA+TTE
Sbjct: 252 GGLPACIANFQALTHLNLSRNHLKYRIYSRLVFSEKLVVLDLSNNELSGPIPSKIAETTE 311

Query: 323 KAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHN 382
           K GLV LDLSHN+FSGEIPLKITELKSLQALFLS+NLL GEIPARIGNLTYLQVID+SHN
Sbjct: 312 KLGLVFLDLSHNQFSGEIPLKITELKSLQALFLSHNLLSGEIPARIGNLTYLQVIDISHN 371

Query: 383 MLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAG 442
            LSG+IP +IVGCFQL ALI+NNNNLSG IQPE DALD L+ILDISNN+ SG IPLTLAG
Sbjct: 372 SLSGTIPFSIVGCFQLYALILNNNNLSGVIQPEFDALDILRILDISNNRFSGAIPLTLAG 431

Query: 443 LKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTN 502
            KSLEIVDFSSN+LSGSLNDAITKWTNL+Y S+A NK +GNLP+WLF+FQAI+ MD S N
Sbjct: 432 CKSLEIVDFSSNDLSGSLNDAITKWTNLRYLSLAWNKFNGNLPSWLFAFQAIETMDLSHN 491

Query: 503 KFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFV-LPRSMVIRISVTAIDTNELSFNYQLFS 561
           KF GFIPD N   SL FN  ++    P   FV   +    R+SV   D+N+LSF Y   S
Sbjct: 492 KFSGFIPDINLKGSLLFNTRNVTVKEP---FVEATKVFEPRVSVVVSDSNQLSFTYDHSS 548

Query: 562 AVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTG 621
             G+DLSDNLLHG IP+GLF L GLEYLNLS NFL+GQ+PGL +++SL+A+DLSHNSL+G
Sbjct: 549 MFGIDLSDNLLHGEIPRGLFGLSGLEYLNLSNNFLNGQLPGLQKMQSLKAIDLSHNSLSG 608

Query: 622 QIPGNISSLQELTLLNLSYNSFSGFVPWKQGYQKFPGAFAGNPNLCLESSHGECNRTSLP 681
            IPGNISSLQ+LT+LNLSYN FSG+VP KQGY +FPGAFAGNP+LCLES  G C    +P
Sbjct: 609 HIPGNISSLQDLTILNLSYNCFSGYVPQKQGYGRFPGAFAGNPDLCLESPSGVCEDGRIP 668

Query: 682 LVPGKTLREEMTEGPISIWAFCLSFFVSFYLGVVALFCSARTRRYILQTKV 732
              G   +E+  +GPIS+  F +S FVSF  GVV LFCSARTR+YILQTK 
Sbjct: 669 SNQGSYFKEDKMDGPISVGIFFISAFVSFDFGVVVLFCSARTRKYILQTKT 719

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	732
TAIR|locus:2206245	720	CLV2 "clavata 2" [Arabidopsis	0.948	0.963	0.613	2.7e-226
UNIPROTKB|Q940E8	613	fea2 "Fasciated ear2" [Zea may	0.704	0.841	0.458	6.4e-115
TAIR|locus:2138268	1045	AT4G08850 [Arabidopsis thalian	0.867	0.607	0.298	4e-67
TAIR|locus:2122239	1136	AT4G36180 [Arabidopsis thalian	0.811	0.522	0.324	4.1e-66
TAIR|locus:2170483	1173	FLS2 "FLAGELLIN-SENSITIVE 2" [	0.825	0.514	0.320	9.7e-65
TAIR|locus:2160791	1102	AT5G63930 [Arabidopsis thalian	0.827	0.549	0.320	1.5e-64
TAIR|locus:2032697	1123	PEPR1 "PEP1 receptor 1" [Arabi	0.821	0.535	0.310	4.5e-64
UNIPROTKB|P93194	1109	INRPK1 "Receptor-like protein	0.830	0.548	0.318	3.8e-62
TAIR|locus:2085949	1141	AT3G24240 [Arabidopsis thalian	0.788	0.505	0.322	5.2e-61
TAIR|locus:2005629	1140	AT1G75640 [Arabidopsis thalian	0.816	0.524	0.304	8.6e-61

TAIR|locus:2206245 CLV2 "clavata 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 2184 (773.9 bits), Expect = 2.7e-226, P = 2.7e-226
 Identities = 429/699 (61%), Positives = 530/699 (75%)

Query:    34 SESLELNLEDKASLLLFKSLVQDPTQKLSSWVGSNCTNWTGVACNFQTGHVVSINLTDTS 93
             S+  +L+ +DKASLL+F+  + D  + LS+W GS+C+NWTG+AC   TG V+S+ L+  +
Sbjct:    25 SQLPDLDPQDKASLLIFRVSIHDLNRSLSTWYGSSCSNWTGLACQNPTGKVLSLTLSGLN 84

Query:    94 LSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKL 153
             LS Q+HP LCKLS L+ L LS N F+G I +CFG L  L+TL+LS N+FVG +P   + L
Sbjct:    85 LSSQIHPSLCKLSSLQSLDLSHNNFSGNIPSCFGSLRNLRTLNLSRNRFVGSIPATFVSL 144

Query:   154 RNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEK 213
             + LRE++L  N +LGGV P W GNFSMNLE++DFSF SF GE+PESL YLKSLK+L+LE 
Sbjct:   145 KELREVVLSENRDLGGVVPHWFGNFSMNLERVDFSFCSFVGELPESLLYLKSLKYLNLES 204

Query:   214 NNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQ 273
             NN+TG + DF Q L+VLNL SN+FSGTLPCF AS  SL++L +  NS+VGG+P+C+ SL+
Sbjct:   205 NNMTGTLRDFQQPLVVLNLASNQFSGTLPCFYASRPSLSILNIAENSLVGGLPSCLGSLK 264

Query:   274 ALTXXXXXXXXXXYEISPRLVFFEKXXXXXXXXXXXXGPLPSKIAQTTEKAGLVLLDLSH 333
              L+          YEISPRL+F EK            G LPS+I++TTEK GLVLLDLSH
Sbjct:   265 ELSHLNLSFNGFNYEISPRLMFSEKLVMLDLSHNGFSGRLPSRISETTEKLGLVLLDLSH 324

Query:   334 NRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIV 393
             N FSG+IPL+ITELKSLQAL LS+NLL G+IPARIGNLTYLQVIDLSHN L+GSIPLNIV
Sbjct:   325 NSFSGDIPLRITELKSLQALRLSHNLLTGDIPARIGNLTYLQVIDLSHNALTGSIPLNIV 384

Query:   394 GCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSS 453
             GCFQLLAL+++NNNLSGEIQPELDALDSLKILDISNN ISGEIPLTLAGLKSLEIVD SS
Sbjct:   385 GCFQLLALMISNNNLSGEIQPELDALDSLKILDISNNHISGEIPLTLAGLKSLEIVDISS 444

Query:   454 NNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDGNF 513
             NNLSG+LN+AITKW+NLKY S+ARNK SG LP+WLF F  IQM+D+S+N+F  FIPD N 
Sbjct:   445 NNLSGNLNEAITKWSNLKYLSLARNKFSGTLPSWLFKFDKIQMIDYSSNRFSWFIPDDNL 504

Query:   514 NFSLNFNKSDIGRSMPAKSFVLPRSMV-IRISVTAIDTNELSFNYQLFSAVGMDLSDNLL 572
             N S  F     G     + F  P   V I+IS   +  +ELSF+Y L S VG+DLSDNLL
Sbjct:   505 N-STRFKDFQTGGG---EGFAEPPGKVEIKISAAVVAKDELSFSYNLLSMVGIDLSDNLL 560

Query:   573 HGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQE 632
             HG IP+ LF+ + +EYLNLS+NFL+GQ+P L +L  L+ALDLSHNSL+GQ+ GNIS+   
Sbjct:   561 HGEIPEALFRQKNIEYLNLSYNFLEGQLPRLEKLPRLKALDLSHNSLSGQVIGNISAPPG 620

Query:   633 LTLLNLSYNSFSGFVPWKQGYQKFPGAFAGNPNLCLESSHGECNRTSLPLVPGKTLREEM 692
             LTLLNLS+N FSG +  K+G  KFPGA AGNP LC+E+   +C+  ++     +  + E+
Sbjct:   621 LTLLNLSHNCFSGIITEKEGLGKFPGALAGNPELCVETPGSKCDPANIDASQEEIYQNEL 680

Query:   693 TEGPISIWAFCLSFFVSFYLGVVALFCSARTRRYILQTK 731
              EGPISIW FCLS F+SF  GV+ +FCSAR R YILQTK
Sbjct:   681 VEGPISIWIFCLSAFISFDFGVLGIFCSARARSYILQTK 719

GO:0005886 "plasma membrane" evidence=ISM

GO:0007165 "signal transduction" evidence=TAS

GO:0016020 "membrane" evidence=ISS

GO:0048507 "meristem development" evidence=RCA;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0033612 "receptor serine/threonine kinase binding" evidence=IPI

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009886 "post-embryonic morphogenesis" evidence=RCA

GO:0009909 "regulation of flower development" evidence=IMP;RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010073 "meristem maintenance" evidence=RCA

GO:0016570 "histone modification" evidence=RCA

GO:0048449 "floral organ formation" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

GO:0009653 "anatomical structure morphogenesis" evidence=IMP

GO:0040008 "regulation of growth" evidence=IMP

UNIPROTKB|Q940E8 fea2 "Fasciated ear2" [Zea mays (taxid:4577)]

 Score = 1133 (403.9 bits), Expect = 6.4e-115, P = 6.4e-115
 Identities = 246/536 (45%), Positives = 331/536 (61%)

Query:   205 SLKHLDLEKNNLTGNVHDFYQSLL----VLNLGSNRFSGTLPCFAASAMSLTVLKLDNNS 260
             S+  L L   NLTG +     +LL     L+L +N  SG LPC  +   SL  L L  N+
Sbjct:    81 SVAELSLRGLNLTGVIPAAPLALLRRLRTLDLSANALSGELPC--SLPRSLLALDLSRNA 138

Query:   261 VVGGIPTCI-ASLQALTXXXXXXXXXXYEISPRLVFFEKXXXXXXXXXXXXGPLPSKIAQ 319
             + G +PTC+ +SL AL             +SPRL F  +            G +P +I  
Sbjct:   139 LSGAVPTCLPSSLPALRTLNLSANFLRLPLSPRLSFPARLAALDLSRNAISGAVPPRIVA 198

Query:   320 TTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDL 379
               + + L+LLDLSHNRFSGEIP  I  ++SLQ LFL++N L G+IP  IGNLTYLQV+DL
Sbjct:   199 DPDNSALLLLDLSHNRFSGEIPAGIAAVRSLQGLFLADNQLSGDIPPGIGNLTYLQVLDL 258

Query:   380 SHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLT 439
             S+N LSGS+P  + GCFQLL L +  N LSG ++PELDAL SLK+LD+SNN+ISGEIPL 
Sbjct:   259 SNNRLSGSVPAGLAGCFQLLYLQLGGNQLSGALRPELDALASLKVLDLSNNKISGEIPLP 318

Query:   440 LAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDF 499
             LAG +SLE+VD S N +SG L+ A+ KW +LK+ S+A N+LSG+LP+W+FSF  +Q +D 
Sbjct:   319 LAGCRSLEVVDLSGNEISGELSSAVAKWLSLKFLSLAGNQLSGHLPDWMFSFPLLQWLDL 378

Query:   500 STNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQL 559
             S+NKF+GFIPDG FN S   N    G+  P++S VLP  + +  SV  +   +L   Y +
Sbjct:   379 SSNKFVGFIPDGGFNVSEVLNGGG-GQGTPSES-VLPPQLFVSASVDTVSW-QLDLGYDV 435

Query:   560 FSAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVP-GLYRLRSLRALDLSHNS 618
              +  G+DLS N L G IP+GL  ++GLEYLNLS N+L GQ+P GL  +  L  LD SHN 
Sbjct:   436 QATTGIDLSGNELCGEIPEGLVDMKGLEYLNLSCNYLAGQIPAGLGGMGRLHTLDFSHNG 495

Query:   619 LTGQIPGNISSLQELTLLNLSYNSFSGFVPWKQGYQKFPGAFAGNPNLCLESSHGECNRT 678
             L+G++P  I+++  L +LNLSYNS SG +P      KFPGA AGNP +C      E  RT
Sbjct:   496 LSGEVPPGIAAMTVLEVLNLSYNSLSGPLPTT----KFPGALAGNPGICSGKGCSENART 551

Query:   679 SLPLVPGKTLREEM-----TEGPISIWAFCLSFFVSFYLGVVALFCSARTRRYILQ 729
                 + G   R  +       G +S+ AFC+S   SFY+ +  L CS+  R ++ +
Sbjct:   552 PEGKMEGSNHRGWLGGWHGENGWVSLGAFCISTMTSFYVSLATLLCSSNARNFVFR 607

GO:0005886 "plasma membrane" evidence=IDA

GO:0009908 "flower development" evidence=IMP

GO:0048509 "regulation of meristem development" evidence=IMP

TAIR|locus:2138268 AT4G08850 [Arabidopsis thaliana (taxid:3702)]

 Score = 687 (246.9 bits), Expect = 4.0e-67, P = 4.0e-67
 Identities = 200/670 (29%), Positives = 329/670 (49%)

Query:    34 SESLELNLEDKASLLLFKSLVQDPTQ--KLSSWVGSN----CTNWTGVACNFQTGHVVSI 87
             S ++   +E+  +LL +KS   + T   KLSSWV  N    CT+W GVAC+   G ++ +
Sbjct:    41 SFAVSATVEEANALLKWKSTFTNQTSSSKLSSWVNPNTSSFCTSWYGVACSL--GSIIRL 98

Query:    88 NLTDTSLSGQVHP-RLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVV 146
             NLT+T + G         L  L F+ LS N F+G IS  +G  S L+  DLS N+ VG +
Sbjct:    99 NLTNTGIEGTFEDFPFSSLPNLTFVDLSMNRFSGTISPLWGRFSKLEYFDLSINQLVGEI 158

Query:   147 PDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSL 206
             P  +  L NL  L L  N +L G  P  +G  +   E   +  N   G IP S   L  L
Sbjct:   159 PPELGDLSNLDTLHLVEN-KLNGSIPSEIGRLTKVTEIAIYD-NLLTGPIPSSFGNLTKL 216

Query:   207 KHLDLEKNNLTGNVHDFYQSLLVLN---LGSNRFSGTLPCFAASAMSLTVLKLDNNSVVG 263
              +L L  N+L+G++     +L  L    L  N  +G +P    +  ++T+L +  N + G
Sbjct:   217 VNLYLFINSLSGSIPSEIGNLPNLRELCLDRNNLTGKIPSSFGNLKNVTLLNMFENQLSG 276

Query:   264 GIPTCIASLQALTXXXXXXXXXXYEISPRLVFFEKXXXXXXXXXXXXGPLPSKIAQTTEK 323
              IP  I ++ AL             I   L   +             G +P ++    E 
Sbjct:   277 EIPPEIGNMTALDTLSLHTNKLTGPIPSTLGNIKTLAVLHLYLNQLNGSIPPELG---EM 333

Query:   324 AGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNM 383
               ++ L++S N+ +G +P    +L +L+ LFL +N L G IP  I N T L V+ L  N 
Sbjct:   334 ESMIDLEISENKLTGPVPDSFGKLTALEWLFLRDNQLSGPIPPGIANSTELTVLQLDTNN 393

Query:   384 LSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGL 443
              +G +P  I    +L  L +++N+  G +   L    SL  +    N  SG+I       
Sbjct:   394 FTGFLPDTICRGGKLENLTLDDNHFEGPVPKSLRDCKSLIRVRFKGNSFSGDISEAFGVY 453

Query:   444 KSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNK 503
              +L  +D S+NN  G L+    +   L  F ++ N ++G +P  +++   +  +D S+N+
Sbjct:   454 PTLNFIDLSNNNFHGQLSANWEQSQKLVAFILSNNSITGAIPPEIWNMTQLSQLDLSSNR 513

Query:   504 FMGFIPDGNFNFSLNFNKSDI-GRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSA 562
               G +P+   N +   +K  + G  +  K   +P  + +  ++  +D +   F+ ++   
Sbjct:   514 ITGELPESISNIN-RISKLQLNGNRLSGK---IPSGIRLLTNLEYLDLSSNRFSSEIPPT 569

Query:   563 VG-------MDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYR-LRSLRALDL 614
             +        M+LS N L  TIP+GL +L  L+ L+LS+N LDG++   +R L++L  LDL
Sbjct:   570 LNNLPRLYYMNLSRNDLDQTIPEGLTKLSQLQMLDLSYNQLDGEISSQFRSLQNLERLDL 629

Query:   615 SHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVPWKQGYQKFP-GAFAGNPNLC--LESS 671
             SHN+L+GQIP +   +  LT +++S+N+  G +P    ++  P  AF GN +LC  + ++
Sbjct:   630 SHNNLSGQIPPSFKDMLALTHVDVSHNNLQGPIPDNAAFRNAPPDAFEGNKDLCGSVNTT 689

Query:   672 HG--ECNRTS 679
              G   C+ TS
Sbjct:   690 QGLKPCSITS 699

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0016020 "membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0006995 "cellular response to nitrogen starvation" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

TAIR|locus:2122239 AT4G36180 [Arabidopsis thaliana (taxid:3702)]

 Score = 680 (244.4 bits), Expect = 4.1e-66, P = 4.1e-66
 Identities = 200/616 (32%), Positives = 289/616 (46%)

Query:    46 SLLLFKSLVQDPTQKLSSWVGSN----CTNWTGVACNFQTGH-VVSINLTDTSLSGQVHP 100
             +L  FK  + DP   L+SW  S     C +W GV C   T H V  I L    LSG++  
Sbjct:    31 ALTAFKLNLHDPLGALTSWDPSTPAAPC-DWRGVGC---TNHRVTEIRLPRLQLSGRISD 86

Query:   101 RLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELI 160
             R+  L  L  L L SN+F G I T     + L ++ L YN   G +P A+  L +L    
Sbjct:    87 RISGLRMLRKLSLRSNSFNGTIPTSLAYCTRLLSVFLQYNSLSGKLPPAMRNLTSLEVFN 146

Query:   161 LKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNV 220
             + GN  L G  P  VG    +L+ LD S N+F G+IP  L  L  L+ L+L  N LTG +
Sbjct:   147 VAGN-RLSGEIP--VG-LPSSLQFLDISSNTFSGQIPSGLANLTQLQLLNLSYNQLTGEI 202

Query:   221 HDFY---QSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTX 277
                    QSL  L L  N   GTLP   ++  SL  L    N + G IP    +L  L  
Sbjct:   203 PASLGNLQSLQYLWLDFNLLQGTLPSAISNCSSLVHLSASENEIGGVIPAAYGALPKLEV 262

Query:   278 XXXXXXXXXYEISPRLVFFEKXXXXXXXXXXXXGPLPSKIAQTTEKAGLVLLDLSHNRFS 337
                        + P  +F                 +         + GL +LDL  NR S
Sbjct:   263 LSLSNNNFSGTV-PFSLFCNTSLTIVQLGFNAFSDIVRPETTANCRTGLQVLDLQENRIS 321

Query:   338 GEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQ 397
             G  PL +T + SL+ L +S NL  GEIP  IGNL  L+ + L++N L+G IP+ I  C  
Sbjct:   322 GRFPLWLTNILSLKNLDVSGNLFSGEIPPDIGNLKRLEELKLANNSLTGEIPVEIKQCGS 381

Query:   398 LLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLS 457
             L  L    N+L G+I   L  + +LK+L +  N  SG +P ++  L+ LE ++   NNL+
Sbjct:   382 LDVLDFEGNSLKGQIPEFLGYMKALKVLSLGRNSFSGYVPSSMVNLQQLERLNLGENNLN 441

Query:   458 GSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPD--GN-FN 514
             GS    +   T+L    ++ N+ SG +P  + +   +  ++ S N F G IP   GN F 
Sbjct:   442 GSFPVELMALTSLSELDLSGNRFSGAVPVSISNLSNLSFLNLSGNGFSGEIPASVGNLFK 501

Query:   515 FS-LNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVGMDLSDNLLH 573
              + L+ +K ++   +P +   LP   VI +               L S   ++LS N   
Sbjct:   502 LTALDLSKQNMSGEVPVELSGLPNVQVIALQGNNFSGVVPEGFSSLVSLRYVNLSSNSFS 561

Query:   574 GTIPKGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIPGNISSLQE 632
             G IP+    L+ L  L+LS N + G +P  +    +L  L+L  N L G IP ++S L  
Sbjct:   562 GEIPQTFGFLRLLVSLSLSDNHISGSIPPEIGNCSALEVLELRSNRLMGHIPADLSRLPR 621

Query:   633 LTLLNLSYNSFSGFVP 648
             L +L+L  N+ SG +P
Sbjct:   622 LKVLDLGQNNLSGEIP 637

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0006260 "DNA replication" evidence=RCA

GO:0006306 "DNA methylation" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0008283 "cell proliferation" evidence=RCA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010073 "meristem maintenance" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0030244 "cellulose biosynthetic process" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

TAIR|locus:2170483 FLS2 "FLAGELLIN-SENSITIVE 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 668 (240.2 bits), Expect = 9.7e-65, P = 9.7e-65
 Identities = 204/636 (32%), Positives = 318/636 (50%)

Query:    35 ESLELNLEDKASLLLFKS-LVQDPTQKLSSW--VGS--NCTNWTGVACNFQTGHVVSINL 89
             +S E  +E   +L  FK+ +  DP   LS W  +GS  +C NWTG+ C+  TGHVVS++L
Sbjct:    25 QSFEPEIE---ALKSFKNGISNDPLGVLSDWTIIGSLRHC-NWTGITCD-STGHVVSVSL 79

Query:    90 TDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDA 149
              +  L G + P +  L++L+ L L+SN+FTG+I    G L+ L  L L  N F G +P  
Sbjct:    80 LEKQLEGVLSPAIANLTYLQVLDLTSNSFTGKIPAEIGKLTELNQLILYLNYFSGSIPSG 139

Query:   150 IMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHL 209
             I +L+N+  L L+ N  L G  P  +   S +L  + F +N+  G+IPE L  L  L+  
Sbjct:   140 IWELKNIFYLDLRNNL-LSGDVPEEICKTS-SLVLIGFDYNNLTGKIPECLGDLVHLQMF 197

Query:   210 DLEKNNLTGNVH---DFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIP 266
                 N+LTG++        +L  L+L  N+ +G +P    + ++L  L L  N + G IP
Sbjct:   198 VAAGNHLTGSIPVSIGTLANLTDLDLSGNQLTGKIPRDFGNLLNLQSLVLTENLLEGDIP 257

Query:   267 TCIASLQALTXXXXXXXXXXYEISPRLVFFEKXXXXXXXXXXXXGPLPSKIAQTTEKAGL 326
               I +  +L            +I   L    +              +PS + + T+   L
Sbjct:   258 AEIGNCSSLVQLELYDNQLTGKIPAELGNLVQLQALRIYKNKLTSSIPSSLFRLTQ---L 314

Query:   327 VLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSG 386
               L LS N   G I  +I  L+SL+ L L +N   GE P  I NL  L V+ +  N +SG
Sbjct:   315 THLGLSENHLVGPISEEIGFLESLEVLTLHSNNFTGEFPQSITNLRNLTVLTVGFNNISG 374

Query:   387 SIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSL 446
              +P ++     L  L  ++N L+G I   +     LK+LD+S+NQ++GEIP    G  +L
Sbjct:   375 ELPADLGLLTNLRNLSAHDNLLTGPIPSSISNCTGLKLLDLSHNQMTGEIPRGF-GRMNL 433

Query:   447 EIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMG 506
               +    N+ +G + D I   +NL+  S+A N L+G L   +   Q ++++  S N   G
Sbjct:   434 TFISIGRNHFTGEIPDDIFNCSNLETLSVADNNLTGTLKPLIGKLQKLRILQVSYNSLTG 493

Query:   507 FIPD--GNF-NFSLNFNKSD--IGRSMPAKSFVLPRSMVIRISVTAID--TNELSFNYQL 559
              IP   GN  + ++ +  S+   GR +P +   L     +R+    ++    E  F+ +L
Sbjct:   494 PIPREIGNLKDLNILYLHSNGFTGR-IPREMSNLTLLQGLRMYSNDLEGPIPEEMFDMKL 552

Query:   560 FSAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNS 618
              S   +DLS+N   G IP    +L+ L YL+L  N  +G +P  L  L  L   D+S N 
Sbjct:   553 LSV--LDLSNNKFSGQIPALFSKLESLTYLSLQGNKFNGSIPASLKSLSLLNTFDISDNL 610

Query:   619 LTGQIPGNI-SSLQELTL-LNLSYNSFSGFVPWKQG 652
             LTG IPG + +SL+ + L LN S N  +G +P + G
Sbjct:   611 LTGTIPGELLASLKNMQLYLNFSNNLLTGTIPKELG 646

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0004675 "transmembrane receptor protein serine/threonine kinase activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS;IDA

GO:0016045 "detection of bacterium" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0042742 "defense response to bacterium" evidence=RCA;IMP

GO:0052544 "defense response by callose deposition in cell wall" evidence=IMP

GO:0010359 "regulation of anion channel activity" evidence=IMP

GO:0016310 "phosphorylation" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0006898 "receptor-mediated endocytosis" evidence=IDA

TAIR|locus:2160791 AT5G63930 [Arabidopsis thaliana (taxid:3702)]

 Score = 665 (239.2 bits), Expect = 1.5e-64, P = 1.5e-64
 Identities = 202/631 (32%), Positives = 305/631 (48%)

Query:    34 SESLELNLEDKASLLLFKSLVQDPTQKLSSWVGSNCT--NWTGVAC-NFQTG-HVVSINL 89
             SE+  LNLE +  LL  KS   D  Q L +W  ++     WTGV C N+ +   V+S+NL
Sbjct:    22 SETTGLNLEGQY-LLEIKSKFVDAKQNLRNWNSNDSVPCGWTGVMCSNYSSDPEVLSLNL 80

Query:    90 TDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDA 149
             +   LSG++ P +  L  L+ L LS N  +G+I    G  S L+ L L+ N+F G +P  
Sbjct:    81 SSMVLSGKLSPSIGGLVHLKQLDLSYNGLSGKIPKEIGNCSSLEILKLNNNQFDGEIPVE 140

Query:   150 IMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHL 209
             I KL +L  LI+  N  + G  P  +GN  ++L +L    N+  G++P S+  LK L   
Sbjct:   141 IGKLVSLENLIIYNN-RISGSLPVEIGNL-LSLSQLVTYSNNISGQLPRSIGNLKRLTSF 198

Query:   210 DLEKNNLTGNVHDFY---QSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIP 266
                +N ++G++       +SL++L L  N+ SG LP        L+ + L  N   G IP
Sbjct:   199 RAGQNMISGSLPSEIGGCESLVMLGLAQNQLSGELPKEIGMLKKLSQVILWENEFSGFIP 258

Query:   267 TCIASLQALTXXXXXXXXXXYEISPRLVFFEKXXXXXXXXXXXXGPLPSKIAQTTEKAGL 326
               I++  +L             I   L   +             G +P +I   +     
Sbjct:   259 REISNCTSLETLALYKNQLVGPIPKELGDLQSLEFLYLYRNGLNGTIPREIGNLSYA--- 315

Query:   327 VLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSG 386
             + +D S N  +GEIPL++  ++ L+ L+L  N L G IP  +  L  L  +DLS N L+G
Sbjct:   316 IEIDFSENALTGEIPLELGNIEGLELLYLFENQLTGTIPVELSTLKNLSKLDLSINALTG 375

Query:   387 SIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSL 446
              IPL       L  L +  N+LSG I P+L     L +LD+S+N +SG IP  L    ++
Sbjct:   376 PIPLGFQYLRGLFMLQLFQNSLSGTIPPKLGWYSDLWVLDMSDNHLSGRIPSYLCLHSNM 435

Query:   447 EIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMG 506
              I++  +NNLSG++   IT    L    +ARN L G  P+ L     +  ++   N+F G
Sbjct:   436 IILNLGTNNLSGNIPTGITTCKTLVQLRLARNNLVGRFPSNLCKQVNVTAIELGQNRFRG 495

Query:   507 FIPD--GNFNFSLNFNKSDIGRS--MPAKSFVLPRSMVIRISVTAIDTNELS---FNYQL 559
              IP   GN +       +D G +  +P +  +L +   + IS   + T E+    FN ++
Sbjct:   496 SIPREVGNCSALQRLQLADNGFTGELPREIGMLSQLGTLNISSNKL-TGEVPSEIFNCKM 554

Query:   560 FSAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVP-GLYRLRSLRALDLSHNS 618
                  +D+  N   GT+P  +  L  LE L LS N L G +P  L  L  L  L +  N 
Sbjct:   555 LQR--LDMCCNNFSGTLPSEVGSLYQLELLKLSNNNLSGTIPVALGNLSRLTELQMGGNL 612

Query:   619 LTGQIPGNISSLQELTL-LNLSYNSFSGFVP 648
               G IP  + SL  L + LNLSYN  +G +P
Sbjct:   613 FNGSIPRELGSLTGLQIALNLSYNKLTGEIP 643

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2032697 PEPR1 "PEP1 receptor 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 661 (237.7 bits), Expect = 4.5e-64, P = 4.5e-64
 Identities = 194/624 (31%), Positives = 293/624 (46%)

Query:    39 LNLEDKASLLLFKSLVQDPTQKLSSWV--GSNCT--NWTGVACNFQTGHVVSINLTDTSL 94
             LN +    L L K L + P Q  S+W    S  T  NW G+ C+  + +V S+N T + +
Sbjct:    29 LNSDGLTLLSLLKHLDRVPPQVTSTWKINASEATPCNWFGITCD-DSKNVASLNFTRSRV 87

Query:    95 SGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLR 154
             SGQ+ P + +L  L+ L LS+N F+G I +  G  + L TLDLS N F   +PD +  L+
Sbjct:    88 SGQLGPEIGELKSLQILDLSTNNFSGTIPSTLGNCTKLATLDLSENGFSDKIPDTLDSLK 147

Query:   155 NLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKN 214
              L  L L  N  L G  P  +      L+ L   +N+  G IP+S+   K L  L +  N
Sbjct:   148 RLEVLYLYIN-FLTGELPESLFRIP-KLQVLYLDYNNLTGPIPQSIGDAKELVELSMYAN 205

Query:   215 NLTGNVHDFY---QSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIAS 271
               +GN+ +      SL +L L  N+  G+LP       +LT L + NNS+ G  P    S
Sbjct:   206 QFSGNIPESIGNSSSLQILYLHRNKLVGSLPESLNLLGNLTTLFVGNNSLQG--PVRFGS 263

Query:   272 LQALTXXXXXXXXXXYE--ISPRLVFFEKXXXXXXXXXXXXGPLPSKIAQTTEKAGLVLL 329
                            +E  + P L                 G +PS +        L +L
Sbjct:   264 PNCKNLLTLDLSYNEFEGGVPPALGNCSSLDALVIVSGNLSGTIPSSLGMLKN---LTIL 320

Query:   330 DLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIP 389
             +LS NR SG IP ++    SL  L L++N L+G IP+ +G L  L+ ++L  N  SG IP
Sbjct:   321 NLSENRLSGSIPAELGNCSSLNLLKLNDNQLVGGIPSALGKLRKLESLELFENRFSGEIP 380

Query:   390 LNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIV 449
             + I     L  L+V  NNL+GE+  E+  +  LKI  + NN   G IP  L    SLE V
Sbjct:   381 IEIWKSQSLTQLLVYQNNLTGELPVEMTEMKKLKIATLFNNSFYGAIPPGLGVNSSLEEV 440

Query:   450 DFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIP 509
             DF  N L+G +   +     L+  ++  N L G +P  +   + I+      N   G +P
Sbjct:   441 DFIGNKLTGEIPPNLCHGRKLRILNLGSNLLHGTIPASIGHCKTIRRFILRENNLSGLLP 500

Query:   510 DGNFNFSLNF---NKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVG-M 565
             + + + SL+F   N ++    +P           I +S     T ++         +G M
Sbjct:   501 EFSQDHSLSFLDFNSNNFEGPIPGSLGSCKNLSSINLSRNRF-TGQIPPQLGNLQNLGYM 559

Query:   566 DLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLY-RLRSLRALDLSHNSLTGQIP 624
             +LS NLL G++P  L     LE  ++ FN L+G VP  +   + L  L LS N  +G IP
Sbjct:   560 NLSRNLLEGSLPAQLSNCVSLERFDVGFNSLNGSVPSNFSNWKGLTTLVLSENRFSGGIP 619

Query:   625 GNISSLQELTLLNLSYNSFSGFVP 648
               +  L++L+ L ++ N+F G +P
Sbjct:   620 QFLPELKKLSTLQIARNAFGGEIP 643

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0001653 "peptide receptor activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0045087 "innate immune response" evidence=TAS

GO:0009611 "response to wounding" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0004383 "guanylate cyclase activity" evidence=IDA

GO:0006955 "immune response" evidence=IMP

GO:0009506 "plasmodesma" evidence=IDA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0052542 "defense response by callose deposition" evidence=RCA

UNIPROTKB|P93194 INRPK1 "Receptor-like protein kinase" [Ipomoea nil (taxid:35883)]

 Score = 643 (231.4 bits), Expect = 3.8e-62, P = 3.8e-62
 Identities = 202/635 (31%), Positives = 298/635 (46%)

Query:    30 CSNPS--ESLELNLEDKASLLLFKSLVQDPTQKLSSWVGSNCT--NWTGVACNFQTGHVV 85
             CS  S   +  LN +  A L L +     P+    SW  S+ T  +W GV C+ +   V 
Sbjct:    13 CSTSSIYAAFALNSDGAALLSLTRHWTSIPSDITQSWNASDSTPCSWLGVECD-RRQFVD 71

Query:    86 SINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGV 145
             ++NL+   +SG+  P +  L  L+ +VLS N F G I +  G  S L+ +DLS N F G 
Sbjct:    72 TLNLSSYGISGEFGPEISHLKHLKKVVLSGNGFFGSIPSQLGNCSLLEHIDLSSNSFTGN 131

Query:   146 VPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKS 205
             +PD +  L+NLR L L  N  L G FP  + +   +LE + F+ N   G IP ++  +  
Sbjct:   132 IPDTLGALQNLRNLSLFFN-SLIGPFPESLLSIP-HLETVYFTGNGLNGSIPSNIGNMSE 189

Query:   206 LKHLDLEKNNLTGNVHDFYQSLLVLN---LGSNRFSGTLPCFAASAMSLTVLKLDNNSVV 262
             L  L L+ N  +G V     ++  L    L  N   GTLP    +  +L  L + NNS+V
Sbjct:   190 LTTLWLDDNQFSGPVPSSLGNITTLQELYLNDNNLVGTLPVTLNNLENLVYLDVRNNSLV 249

Query:   263 GGIPTCIASLQALTXXXXXXXXXXYEISPRLVFFEKXXXXXXXXXXXXGPLPSKIAQTTE 322
             G IP    S + +             + P L                 GP+PS   Q T+
Sbjct:   250 GAIPLDFVSCKQIDTISLSNNQFTGGLPPGLGNCTSLREFGAFSCALSGPIPSCFGQLTK 309

Query:   323 KAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHN 382
                L  L L+ N FSG IP ++ + KS+  L L  N L GEIP  +G L+ LQ + L  N
Sbjct:   310 ---LDTLYLAGNHFSGRIPPELGKCKSMIDLQLQQNQLEGEIPGELGMLSQLQYLHLYTN 366

Query:   383 MLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAG 442
              LSG +PL+I     L +L +  NNLSGE+  ++  L  L  L +  N  +G IP  L  
Sbjct:   367 NLSGEVPLSIWKIQSLQSLQLYQNNLSGELPVDMTELKQLVSLALYENHFTGVIPQDLGA 426

Query:   443 LKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTN 502
               SLE++D + N  +G +   +     LK   +  N L G++P+ L     ++ +    N
Sbjct:   427 NSSLEVLDLTRNMFTGHIPPNLCSQKKLKRLLLGYNYLEGSVPSDLGGCSTLERLILEEN 486

Query:   503 KFMGFIPDGNFNFSLNFNKSDI-GRSMPAKSFVLPRSMVIRISVTAI--DTNELSFNY-- 557
                G +PD  F    N    D+ G +       +P S+    +VTAI   +N+LS +   
Sbjct:   487 NLRGGLPD--FVEKQNLLFFDLSGNNFTGP---IPPSLGNLKNVTAIYLSSNQLSGSIPP 541

Query:   558 QLFSAVGMD---LSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALD 613
             +L S V ++   LS N+L G +P  L     L  L+ S N L+G +P  L  L  L  L 
Sbjct:   542 ELGSLVKLEHLNLSHNILKGILPSELSNCHKLSELDASHNLLNGSIPSTLGSLTELTKLS 601

Query:   614 LSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVP 648
             L  NS +G IP ++    +L  L L  N  +G +P
Sbjct:   602 LGENSFSGGIPTSLFQSNKLLNLQLGGNLLAGDIP 636

GO:0005524 "ATP binding" evidence=NAS

GO:0005576 "extracellular region" evidence=NAS

GO:0005886 "plasma membrane" evidence=NAS

GO:0006468 "protein phosphorylation" evidence=NAS

GO:0019199 "transmembrane receptor protein kinase activity" evidence=NAS

TAIR|locus:2085949 AT3G24240 [Arabidopsis thaliana (taxid:3702)]

 Score = 633 (227.9 bits), Expect = 5.2e-61, P = 5.2e-61
 Identities = 195/604 (32%), Positives = 293/604 (48%)

Query:    35 ESLELNLEDKASLLLFKSLVQDPTQKLSSWVGSNCTNWTGVACNFQTGHVVSINLTDTSL 94
             ES+ L L    +L  F+SL     QKL+   G+N T     +     G  V ++L+   L
Sbjct:    89 ESVPLQLSLPKNLPAFRSL-----QKLTI-SGANLTGTLPESLGDCLGLKV-LDLSSNGL 141

Query:    95 SGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLR 154
              G +   L KL  LE L+L+SN  TG+I       S LK+L L  N   G +P  + KL 
Sbjct:   142 VGDIPWSLSKLRNLETLILNSNQLTGKIPPDISKCSKLKSLILFDNLLTGSIPTELGKLS 201

Query:   155 NLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKN 214
              L  + + GN E+ G  P  +G+ S NL  L  +  S  G +P SL  LK L+ L +   
Sbjct:   202 GLEVIRIGGNKEISGQIPSEIGDCS-NLTVLGLAETSVSGNLPSSLGKLKKLETLSIYTT 260

Query:   215 NLTGNV-HDF--YQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIAS 271
              ++G +  D      L+ L L  N  SG++P        L  L L  NS+VGGIP  I +
Sbjct:   261 MISGEIPSDLGNCSELVDLFLYENSLSGSIPREIGQLTKLEQLFLWQNSLVGGIPEEIGN 320

Query:   272 LQALTXXXXXXXXXXYEISP---RLVFFEKXXXXXXXXXXXXGPLPSKIAQTTEKAGLVL 328
                L             I     RL F E+            G +P+ I+  +    LV 
Sbjct:   321 CSNLKMIDLSLNLLSGSIPSSIGRLSFLEEFMISDNKFS---GSIPTTISNCSS---LVQ 374

Query:   329 LDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSI 388
             L L  N+ SG IP ++  L  L   F  +N L G IP  + + T LQ +DLS N L+G+I
Sbjct:   375 LQLDKNQISGLIPSELGTLTKLTLFFAWSNQLEGSIPPGLADCTDLQALDLSRNSLTGTI 434

Query:   389 PLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEI 448
             P  +     L  L++ +N+LSG I  E+    SL  L +  N+I+GEIP  +  LK +  
Sbjct:   435 PSGLFMLRNLTKLLLISNSLSGFIPQEIGNCSSLVRLRLGFNRITGEIPSGIGSLKKINF 494

Query:   449 VDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFI 508
             +DFSSN L G + D I   + L+   ++ N L G+LPN + S   +Q++D S N+F G I
Sbjct:   495 LDFSSNRLHGKVPDEIGSCSELQMIDLSNNSLEGSLPNPVSSLSGLQVLDVSANQFSGKI 554

Query:   509 PDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNY--QLFSA---- 562
             P  +    ++ NK  + +++ + S      M   + +  + +NELS     +L       
Sbjct:   555 P-ASLGRLVSLNKLILSKNLFSGSIPTSLGMCSGLQLLDLGSNELSGEIPSELGDIENLE 613

Query:   563 VGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQ 622
             + ++LS N L G IP  +  L  L  L+LS N L+G +  L  + +L +L++S+NS +G 
Sbjct:   614 IALNLSSNRLTGKIPSKIASLNKLSILDLSHNMLEGDLAPLANIENLVSLNISYNSFSGY 673

Query:   623 IPGN 626
             +P N
Sbjct:   674 LPDN 677

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010359 "regulation of anion channel activity" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2005629 AT1G75640 [Arabidopsis thaliana (taxid:3702)]

 Score = 631 (227.2 bits), Expect = 8.6e-61, P = 8.6e-61
 Identities = 188/618 (30%), Positives = 293/618 (47%)

Query:    46 SLLLFKSLVQDPTQKLSSWVGSNCT---NWTGVACNFQTGHVVSINLTDTSLSGQVHPRL 102
             +L  FK  + DP   L SW  S+ +   +W GV+C F +G V  + L    L+G + PRL
Sbjct:    31 ALTSFKLSLHDPLGALESWNQSSPSAPCDWHGVSC-F-SGRVRELRLPRLHLTGHLSPRL 88

Query:   103 CKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILK 162
              +L+ L  L L +N   G + +       L+ L L YN F G  P  I+ LRNL+ L   
Sbjct:    89 GELTQLRKLSLHTNDINGAVPSSLSRCVFLRALYLHYNSFSGDFPPEILNLRNLQVLNAA 148

Query:   163 GNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHD 222
              N   G +    V   S +L  +D S N+  G+IP +     SL+ ++L  N+ +G +  
Sbjct:   149 HNSLTGNLSDVTV---SKSLRYVDLSSNAISGKIPANFSADSSLQLINLSFNHFSGEIPA 205

Query:   223 FY---QSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTXXX 279
                  Q L  L L SN+  GT+P   A+  SL    +  N + G IP  + ++++L    
Sbjct:   206 TLGQLQDLEYLWLDSNQLQGTIPSALANCSSLIHFSVTGNHLTGLIPVTLGTIRSLQVIS 265

Query:   280 XXXXXXXYEISPRLVFFEKXXXXXXXXXXXXGPLPSKIAQTTEKA----GLVLLDLSHNR 335
                      +   L+                    + IA+ +  A     L +LD+  NR
Sbjct:   266 LSENSFTGTVPVSLLCGYSGYNSSMRIIQLGVNNFTGIAKPSNAACVNPNLEILDIHENR 325

Query:   336 FSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGC 395
              +G+ P  +T+L SL  L +S N   G + A++GNL  LQ + +++N L G IP +I  C
Sbjct:   326 INGDFPAWLTDLTSLVVLDISGNGFSGGVTAKVGNLMALQELRVANNSLVGEIPTSIRNC 385

Query:   396 FQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNN 455
               L  +    N  SG+I   L  L SL  + +  N  SG IP  L  L  LE ++ + N+
Sbjct:   386 KSLRVVDFEGNKFSGQIPGFLSQLRSLTTISLGRNGFSGRIPSDLLSLYGLETLNLNENH 445

Query:   456 LSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIP---DGN 512
             L+G++   ITK  NL   +++ N+ SG +P+ +   +++ +++ S     G IP    G 
Sbjct:   446 LTGAIPSEITKLANLTILNLSFNRFSGEVPSNVGDLKSLSVLNISGCGLTGRIPVSISGL 505

Query:   513 FNFS-LNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVGMDLSDNL 571
                  L+ +K  I   +P + F LP   V+ +    +          L S   ++LS NL
Sbjct:   506 MKLQVLDISKQRISGQLPVELFGLPDLQVVALGNNLLGGVVPEGFSSLVSLKYLNLSSNL 565

Query:   572 LHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIPGNISSL 630
               G IPK    L+ L+ L+LS N + G +P  +    SL  L+L  NSL G IP  +S L
Sbjct:   566 FSGHIPKNYGFLKSLQVLSLSHNRISGTIPPEIGNCSSLEVLELGSNSLKGHIPVYVSKL 625

Query:   631 QELTLLNLSYNSFSGFVP 648
               L  L+LS+NS +G +P
Sbjct:   626 SLLKKLDLSHNSLTGSIP 643

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O80809	CLV2_ARATH	No assigned EC number	0.6350	0.9439	0.9597	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00870064 hypothetical protein (725 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	732
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-84
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-54
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	7e-37
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-14
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-14
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-14
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-11
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-11
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-10
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	1e-07
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	3e-07
pfam08263	42	pfam08263, LRRNT_2, Leucine rich repeat N-terminal	3e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-06
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	3e-06
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	1e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-04
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	2e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	8e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.002
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	0.002
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	0.004
COG5238	388	COG5238, RNA1, Ran GTPase-activating protein (RanG	0.004
PLN03210	1153	PLN03210, PLN03210, Resistant to P	0.004

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  287 bits (737), Expect = 1e-84
 Identities = 208/636 (32%), Positives = 297/636 (46%), Gaps = 88/636 (13%)

Query: 19  MLPLLLFLLLLCSNPSESLELNLEDKASLLLFKSLVQDPTQKLSSWVGSN-CTNWTGVAC 77
            L  +LF L L  +   + EL L     LL FKS + DP + LS+W  S     W G+ C
Sbjct: 11  YLIFMLFFLFLNFSMLHAEELEL-----LLSFKSSINDPLKYLSNWNSSADVCLWQGITC 65

Query: 78  NFQTGHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRI-STCFGGLSGLKTLD 136
           N  +  VVSI+L+  ++SG++   + +L +++ + LS+N  +G I    F   S L+ L+
Sbjct: 66  N-NSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLN 124

Query: 137 LSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEI 196
           LS N F G +P                                 NLE LD S N   GEI
Sbjct: 125 LSNNNFTGSIP----------------------------RGSIPNLETLDLSNNMLSGEI 156

Query: 197 PESLYYLKSLKHLDLEKNNLTGNVHDF---YQSLLVLNLGSNRFSGTLPCFAASAMSLTV 253
           P  +    SLK LDL  N L G + +      SL  L L SN+  G +P       SL  
Sbjct: 157 PNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKW 216

Query: 254 LKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPL 313
           + L  N++ G IP  I  L +L HL+L +N+L   I   L   + L  L L  N LSGP+
Sbjct: 217 IYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPI 276

Query: 314 PSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTY 373
           P  I    +   L+ LDLS N  SGEIP  + +L++L+ L L +N   G+IP  + +L  
Sbjct: 277 PPSIFSLQK---LISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPR 333

Query: 374 LQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQIS 433
           LQV+ L  N  SG IP N+     L  L ++ NNL+GEI   L +  +L  L + +N + 
Sbjct: 334 LQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLE 393

Query: 434 GEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQA 493
           GEIP +L   +SL  V    N+ SG L    TK   + +  I+ N L G + +  +   +
Sbjct: 394 GEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPS 453

Query: 494 IQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNEL 553
           +QM+  + NKF G +PD       +F    +                             
Sbjct: 454 LQMLSLARNKFFGGLPD-------SFGSKRLEN--------------------------- 479

Query: 554 SFNYQLFSAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLRAL 612
                      +DLS N   G +P+ L  L  L  L LS N L G++P  L   + L +L
Sbjct: 480 -----------LDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSL 528

Query: 613 DLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVP 648
           DLSHN L+GQIP + S +  L+ L+LS N  SG +P
Sbjct: 529 DLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIP 564

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  200 bits (510), Expect = 6e-54
 Identities = 146/403 (36%), Positives = 208/403 (51%), Gaps = 11/403 (2%)

Query: 87  INLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVV 146
           + L    L GQ+   L ++  L+++ L  N  +G I    GGL+ L  LDL YN   G +
Sbjct: 193 LTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPI 252

Query: 147 PDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSL 206
           P ++  L+NL+ L L  N +L G  P  + +    L  LD S NS  GEIPE +  L++L
Sbjct: 253 PSSLGNLKNLQYLFLYQN-KLSGPIPPSIFSLQ-KLISLDLSDNSLSGEIPELVIQLQNL 310

Query: 207 KHLDLEKNNLTGNVHDFYQSL---LVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVG 263
           + L L  NN TG +     SL    VL L SN+FSG +P       +LTVL L  N++ G
Sbjct: 311 EILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTG 370

Query: 264 GIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEK 323
            IP  + S   L  L L  N L  EI   L     L  + L  N  SG LPS+      K
Sbjct: 371 EIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFT----K 426

Query: 324 AGLV-LLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHN 382
             LV  LD+S+N   G I  +  ++ SLQ L L+ N   G +P   G+   L+ +DLS N
Sbjct: 427 LPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGS-KRLENLDLSRN 485

Query: 383 MLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAG 442
             SG++P  +    +L+ L ++ N LSGEI  EL +   L  LD+S+NQ+SG+IP + + 
Sbjct: 486 QFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSE 545

Query: 443 LKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLP 485
           +  L  +D S N LSG +   +    +L   +I+ N L G+LP
Sbjct: 546 MPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLP 588

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  148 bits (375), Expect = 7e-37
 Identities = 117/339 (34%), Positives = 171/339 (50%), Gaps = 33/339 (9%)

Query: 79  FQTGHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLS 138
           F    ++S++L+D SLSG++   + +L  LE L L SN FTG+I      L  L+ L L 
Sbjct: 281 FSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLW 340

Query: 139 YNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPE 198
            NKF G +P  + K  NL  L L  N  L G  P  + + S NL KL    NS  GEIP+
Sbjct: 341 SNKFSGEIPKNLGKHNNLTVLDLSTN-NLTGEIPEGLCS-SGNLFKLILFSNSLEGEIPK 398

Query: 199 SLYYLKSLKHLDLEKNNLTGNV-HDFYQSLLV--LNLGSNRFSGTLPCFAASAMSLTVLK 255
           SL   +SL+ + L+ N+ +G +  +F +  LV  L++ +N   G +        SL +L 
Sbjct: 399 SLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLS 458

Query: 256 LDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPS 315
           L  N   GG+P    S                         ++L  LDLS N  SG +P 
Sbjct: 459 LARNKFFGGLPDSFGS-------------------------KRLENLDLSRNQFSGAVPR 493

Query: 316 KIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQ 375
           K+   +E   L+ L LS N+ SGEIP +++  K L +L LS+N L G+IPA    +  L 
Sbjct: 494 KLGSLSE---LMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLS 550

Query: 376 VIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQP 414
            +DLS N LSG IP N+     L+ + +++N+L G +  
Sbjct: 551 QLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPS 589

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 77.5 bits (191), Expect = 1e-14
 Identities = 39/115 (33%), Positives = 59/115 (51%), Gaps = 24/115 (20%)

Query: 329 LDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSI 388
           L L +    G IP  I++L+ LQ++ LS N + G IP  +G++T L+V+DLS+N  +GSI
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 389 PLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGL 443
           P                          L  L SL+IL+++ N +SG +P  L G 
Sbjct: 483 P------------------------ESLGQLTSLRILNLNGNSLSGRVPAALGGR 513

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 77.2 bits (190), Expect = 1e-14
 Identities = 47/143 (32%), Positives = 71/143 (49%), Gaps = 11/143 (7%)

Query: 64  WVGSNCTN----WTGVACNF--QTGH--VVSINLTDTSLSGQVHPRLCKLSFLEFLVLSS 115
           W G  C      W+G  C F    G   +  + L +  L G +   + KL  L+ + LS 
Sbjct: 392 WNGDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSG 451

Query: 116 NAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWV 175
           N+  G I    G ++ L+ LDLSYN F G +P+++ +L +LR L L GN  L G  P  +
Sbjct: 452 NSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGN-SLSGRVPAAL 510

Query: 176 GNFSMNLEKLDFSFNS-FCGEIP 197
           G   ++    +F+ N+  CG IP
Sbjct: 511 GGRLLHRASFNFTDNAGLCG-IP 532

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 76.8 bits (189), Expect = 2e-14
 Identities = 43/108 (39%), Positives = 59/108 (54%), Gaps = 4/108 (3%)

Query: 564 GMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVP-GLYRLRSLRALDLSHNSLTGQ 622
           G+ L +  L G IP  + +L+ L+ +NLS N + G +P  L  + SL  LDLS+NS  G 
Sbjct: 422 GLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 623 IPGNISSLQELTLLNLSYNSFSGFVPWKQGYQKFPGA---FAGNPNLC 667
           IP ++  L  L +LNL+ NS SG VP   G +    A   F  N  LC
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLC 529

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 67.9 bits (166), Expect = 1e-11
 Identities = 38/116 (32%), Positives = 54/116 (46%), Gaps = 27/116 (23%)

Query: 254 LKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPL 313
           L LDN  + G IP  I+ L+ L  +NLS N +   I P             S   ++   
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPP-------------SLGSITS-- 467

Query: 314 PSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIG 369
                       L +LDLS+N F+G IP  + +L SL+ L L+ N L G +PA +G
Sbjct: 468 ------------LEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 66.4 bits (162), Expect = 3e-11
 Identities = 29/86 (33%), Positives = 53/86 (61%)

Query: 400 ALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGS 459
            L ++N  L G I  ++  L  L+ +++S N I G IP +L  + SLE++D S N+ +GS
Sbjct: 422 GLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 460 LNDAITKWTNLKYFSIARNKLSGNLP 485
           + +++ + T+L+  ++  N LSG +P
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 62.5 bits (152), Expect = 5e-10
 Identities = 38/86 (44%), Positives = 53/86 (61%), Gaps = 2/86 (2%)

Query: 135 LDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCG 194
           L L      G +P+ I KLR+L+ + L GN  + G  P  +G+ + +LE LD S+NSF G
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGN-SIRGNIPPSLGSIT-SLEVLDLSYNSFNG 480

Query: 195 EIPESLYYLKSLKHLDLEKNNLTGNV 220
            IPESL  L SL+ L+L  N+L+G V
Sbjct: 481 SIPESLGQLTSLRILNLNGNSLSGRV 506

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 54.6 bits (131), Expect = 1e-07
 Identities = 83/326 (25%), Positives = 140/326 (42%), Gaps = 17/326 (5%)

Query: 195 EIPESLYYLKSLKHLDLEKNNLTGNV--HDFYQSLLVLNLGSNRFSGTLPCFAASAMSLT 252
           +  E+L  L  L  LDL  N L  N+       +L  L+L +N  +   P       +L 
Sbjct: 84  DGSENLLNLLPLPSLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLK 143

Query: 253 VLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGP 312
            L L +N +   +P+ + +L  L +L+LS N L+ ++   L     L  LDLS N +S  
Sbjct: 144 ELDLSDNKI-ESLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-D 200

Query: 313 LPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLT 372
           LP +I      + L  LDLS+N    E+   ++ LK+L  L LSNN L  ++P  IGNL+
Sbjct: 201 LPPEIE---LLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLS 255

Query: 373 YLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQI 432
            L+ +DLS+N +S    ++ +G    L  +  + N      P +  L  L  L ++    
Sbjct: 256 NLETLDLSNNQISS---ISSLGSLTNLRELDLSGNSLSNALPLIALLLLLLELLLNLLLT 312

Query: 433 SGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQ 492
              + L    L S+ + +   +N   S  +A++   +L       N L  +  N     +
Sbjct: 313 LKALEL---KLNSILLNNNILSNGETSSPEALSILESLNNLWTLDNALDESNLNRYI-VK 368

Query: 493 AIQMMDFSTNKFMGFIPDGNFNFSLN 518
               +    +     +       + N
Sbjct: 369 NPNAIGSLLDLVKKHVNQLLEKVNYN 394

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 47.5 bits (114), Expect = 3e-07
 Identities = 25/58 (43%), Positives = 30/58 (51%)

Query: 108 LEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNP 165
           L+ L LS+N  T      F GL  LK LDLS N    + P+A   L +LR L L GN 
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNN 59

Length = 60

>gnl|CDD|219766 pfam08263, LRRNT_2, Leucine rich repeat N-terminal domain

 Score = 46.9 bits (112), Expect = 3e-07
 Identities = 19/40 (47%), Positives = 26/40 (65%), Gaps = 3/40 (7%)

Query: 42 EDKASLLLFK-SLVQDPTQKLSSWVGS--NCTNWTGVACN 78
          +D+ +LL FK SL  DP+  LSSW  S  +  +WTGV C+
Sbjct: 3  DDRDALLAFKSSLNGDPSGALSSWNPSSSDPCSWTGVTCD 42

Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats. Length = 42

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 50.2 bits (120), Expect = 3e-06
 Identities = 28/88 (31%), Positives = 44/88 (50%)

Query: 230 LNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEI 289
           L L +    G +P   +    L  + L  NS+ G IP  + S+ +L  L+LS+N  N  I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 290 SPRLVFFEKLLLLDLSFNDLSGPLPSKI 317
              L     L +L+L+ N LSG +P+ +
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 49.6 bits (118), Expect = 3e-06
 Identities = 86/324 (26%), Positives = 142/324 (43%), Gaps = 63/324 (19%)

Query: 129 LSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNP--ELGGVFPGWVGNFSMNLEKLD 186
           L  L +LDL+ N+        +++L NL  L L  N   ++    P  +G    NL++LD
Sbjct: 92  LLPLPSLDLNLNRLRSN-ISELLELTNLTSLDLDNNNITDI----PPLIGLLKSNLKELD 146

Query: 187 FSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAA 246
            S N     +P  L  L +LK+LDL  N+L+                             
Sbjct: 147 LSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS----------------------------- 176

Query: 247 SAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSF 306
                             +P  +++L  L +L+LS N ++ ++ P +     L  LDLS 
Sbjct: 177 -----------------DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSN 218

Query: 307 NDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPA 366
           N +   L S ++       L  L+LS+N+   ++P  I  L +L+ L LSNN  I  I +
Sbjct: 219 NSII-ELLSSLSNLK---NLSGLELSNNKLE-DLPESIGNLSNLETLDLSNN-QISSISS 272

Query: 367 RIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILD 426
            +G+LT L+ +DLS N LS ++PL I     LL L++N       ++ +L+++     + 
Sbjct: 273 -LGSLTNLRELDLSGNSLSNALPL-IALLLLLLELLLNLLLTLKALELKLNSILLNNNIL 330

Query: 427 ISNNQISGEIPLTLAGLKSLEIVD 450
            +    S E    L  L +L  +D
Sbjct: 331 SNGETSSPEALSILESLNNLWTLD 354

Length = 394

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 47.7 bits (114), Expect = 1e-05
 Identities = 57/232 (24%), Positives = 91/232 (39%), Gaps = 47/232 (20%)

Query: 251 LTVLKLDNNSVVGG----IPTCIASLQALTHLNLSHNHLNYEISPRLV-----FFEK--- 298
           L VL+L+ N++       + + +    +L  L LS N       PR +        K   
Sbjct: 25  LQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNET--GRIPRGLQSLLQGLTKGCG 82

Query: 299 LLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEI-PLKITELKSLQ----AL 353
           L  LDLS N L       +      + L  L L++N        L    LK L      L
Sbjct: 83  LQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKL 142

Query: 354 FLSNNLLIGEIPARIGNL----TYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLS 409
            L  N L G     +         L+ ++L++N +  +         + LA         
Sbjct: 143 VLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDA-------GIRALA--------- 186

Query: 410 GEIQPELDALDSLKILDISNNQISGE----IPLTLAGLKSLEIVDFSSNNLS 457
                 L A  +L++LD++NN ++ E    +  TLA LKSLE+++   NNL+
Sbjct: 187 ----EGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLT 234

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 39.4 bits (93), Expect = 2e-04
 Identities = 27/56 (48%), Positives = 33/56 (58%), Gaps = 3/56 (5%)

Query: 566 DLSDNLLHGTIPKGLFQ-LQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSL 619
           DLS+N L   IP G F+ L  L+ L+LS N L    P     L SLR+LDLS N+L
Sbjct: 6   DLSNNRLT-VIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 39.4 bits (93), Expect = 2e-04
 Identities = 24/60 (40%), Positives = 31/60 (51%), Gaps = 1/60 (1%)

Query: 585 GLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSF 643
            L+ L+LS N L     G    L +L+ LDLS N+LT   P   S L  L  L+LS N+ 
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 43.9 bits (104), Expect = 2e-04
 Identities = 66/244 (27%), Positives = 102/244 (41%), Gaps = 39/244 (15%)

Query: 132 LKTLDLSYN------KFVGVVPDAIMKLRNLRELILKGN---PELGGVFPGWVGNFSMNL 182
           LK L LS N      + +  +   + K   L+EL L  N   P+  GV    + + S  L
Sbjct: 53  LKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSS--L 110

Query: 183 EKLDFSFNSFCGE----IPESLYYLK-SLKHLDLEKNNLTG-------NVHDFYQSLLVL 230
           ++L  + N         + + L  L  +L+ L L +N L G             + L  L
Sbjct: 111 QELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKEL 170

Query: 231 NLGSNRFSG-----TLPCFAASAMSLTVLKLDNNSV----VGGIPTCIASLQALTHLNLS 281
           NL +N               A+  +L VL L+NN +       +   +ASL++L  LNL 
Sbjct: 171 NLANNGIGDAGIRALAEGLKANC-NLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLG 229

Query: 282 HNHLN----YEISPRLVFFE-KLLLLDLSFNDLSGPLPSKIAQT-TEKAGLVLLDLSHNR 335
            N+L       ++  L+     LL L LS ND++      +A+   EK  L+ LDL  N+
Sbjct: 230 DNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNK 289

Query: 336 FSGE 339
           F  E
Sbjct: 290 FGEE 293

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 43.7 bits (103), Expect = 4e-04
 Identities = 26/76 (34%), Positives = 42/76 (55%), Gaps = 3/76 (3%)

Query: 194 GEIPESLYYLKSLKHLDLEKNNLTGNVHDFY---QSLLVLNLGSNRFSGTLPCFAASAMS 250
           G IP  +  L+ L+ ++L  N++ GN+        SL VL+L  N F+G++P       S
Sbjct: 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTS 491

Query: 251 LTVLKLDNNSVVGGIP 266
           L +L L+ NS+ G +P
Sbjct: 492 LRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 42.5 bits (100), Expect = 8e-04
 Identities = 24/65 (36%), Positives = 32/65 (49%)

Query: 225 QSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNH 284
           + L  +NL  N   G +P    S  SL VL L  NS  G IP  +  L +L  LNL+ N 
Sbjct: 442 RHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNS 501

Query: 285 LNYEI 289
           L+  +
Sbjct: 502 LSGRV 506

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.8 bits (86), Expect = 0.002
 Identities = 19/60 (31%), Positives = 35/60 (58%)

Query: 421 SLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKL 480
           +LK LD+SNN+++        GL +L+++D S NNL+    +A +   +L+   ++ N L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 40.4 bits (95), Expect = 0.002
 Identities = 72/305 (23%), Positives = 110/305 (36%), Gaps = 60/305 (19%)

Query: 83  HVVSINLTDTSLSG----QVHPRLCKLSFLEFLVLSSNAFTGRIST-------CFGGLSG 131
            +  + L   +L       +   L     L+ L LS N  TGRI               G
Sbjct: 24  CLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLN-ETGRIPRGLQSLLQGLTKGCG 82

Query: 132 LKTLDLSYNKF----VGVVPDAIMKLRNLRELILKGNPELGGVFP---GWVGNFSMNLEK 184
           L+ LDLS N       GV+  ++++  +L+EL L  N             + +    LEK
Sbjct: 83  LQELDLSDNALGPDGCGVLE-SLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEK 141

Query: 185 LDFSFNSF----CGEIPESLYYLKSLKHLDLEKNNLTGN-----VHDF--YQSLLVLNLG 233
           L    N      C  + ++L   + LK L+L  N +                +L VL+L 
Sbjct: 142 LVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLN 201

Query: 234 SNRF--------SGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASL--------QALTH 277
           +N          + TL     S  SL VL L +N++        A+L         +L  
Sbjct: 202 NNGLTDEGASALAETLA----SLKSLEVLNLGDNNLTD---AGAAALASALLSPNISLLT 254

Query: 278 LNLSHNHLNYE--ISPRLVFFEK--LLLLDLSFNDLSGPLPSKIAQTTE--KAGLVLLDL 331
           L+LS N +  +       V  EK  LL LDL  N         +A++       L  L +
Sbjct: 255 LSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWV 314

Query: 332 SHNRF 336
             + F
Sbjct: 315 KDDSF 319

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 40.0 bits (93), Expect = 0.004
 Identities = 61/256 (23%), Positives = 106/256 (41%), Gaps = 29/256 (11%)

Query: 390 LNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIV 449
            + +     L L+  +   S +    L  L  L  LD++ N++   I   L  L +L  +
Sbjct: 63  PSSLSRLLSLDLLSPSGISSLDGSENLLNLLPLPSLDLNLNRLRSNI-SELLELTNLTSL 121

Query: 450 DFSSNNLSGSLNDAITKWT-NLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFI 508
           D  +NN++  +   I     NLK   ++ NK+  +LP+ L +   ++ +D S N      
Sbjct: 122 DLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLSDLP 179

Query: 509 PDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVGMDLS 568
                   L  N S++       +  L  + +  +       + L           +DLS
Sbjct: 180 K-------LLSNLSNL------NNLDLSGNKISDLPPEIELLSALEE---------LDLS 217

Query: 569 DNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNIS 628
           +N +   +   L  L+ L  L LS N L+     +  L +L  LDLS+N ++     ++ 
Sbjct: 218 NNSII-ELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQIS--SISSLG 274

Query: 629 SLQELTLLNLSYNSFS 644
           SL  L  L+LS NS S
Sbjct: 275 SLTNLRELDLSGNSLS 290

Length = 394

>gnl|CDD|227563 COG5238, RNA1, Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

 Score = 39.9 bits (93), Expect = 0.004
 Identities = 65/246 (26%), Positives = 98/246 (39%), Gaps = 39/246 (15%)

Query: 254 LKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRL--VFFEKLLLLDLSFNDL-S 310
           LKL+    V G+   +  +  L  ++LS N +  E    L  V      L  ++F+D  +
Sbjct: 11  LKLETKEDVKGVVEELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFT 70

Query: 311 GPLPSKIAQTTEKAGLVLL--------DLSHNRFSGEIPLKITELKS----LQALFLSNN 358
           G    ++          LL        DLS N F  E P ++ +L S    L  L L+NN
Sbjct: 71  GRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNN 130

Query: 359 LLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDA 418
            L      RIG   +     L++N  +   P       +L  +I   N L    +    A
Sbjct: 131 GLGPIAGGRIGKALF----HLAYNKKAADKP-------KLEVVICGRNRLENGSKELSAA 179

Query: 419 L----DSLKILDISNNQISGE-----IPLTLAGLKSLEIVDFSSNNLS--GS--LNDAIT 465
           L    ++LK + I  N I  E       L L    SLE++D   N  +  GS  L DA+ 
Sbjct: 180 LLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALC 239

Query: 466 KWTNLK 471
           +W  L+
Sbjct: 240 EWNLLR 245

Length = 388

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 40.2 bits (94), Expect = 0.004
 Identities = 85/329 (25%), Positives = 138/329 (41%), Gaps = 58/329 (17%)

Query: 148 DAIMKLRNLRELILKGNPELGGVFPGWVGNFSM--NLEKLDFSFNSFCGEIPESLYYLKS 205
           D +  L  LR + L+G+  L  +      + SM  NLE L  S  S   E+P S+ YL  
Sbjct: 628 DGVHSLTGLRNIDLRGSKNLKEI-----PDLSMATNLETLKLSDCSSLVELPSSIQYLNK 682

Query: 206 LKHLDLEK----NNLTGNVHDFYQSLLVLNL-GSNRFSGTLPCFAASAMSLTVLKLDNNS 260
           L+ LD+ +      L   ++   +SL  LNL G +R    L  F   + +++ L LD   
Sbjct: 683 LEDLDMSRCENLEILPTGIN--LKSLYRLNLSGCSR----LKSFPDISTNISWLDLDE-- 734

Query: 261 VVGGIPTCIASLQALTHL-NLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQ 319
                 T I    +   L NL    L    S +L    + L           PL + ++ 
Sbjct: 735 ------TAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLT----------PLMTMLSP 778

Query: 320 TTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDL 379
           +  +     L LS      E+P  I  L  L+ L + N + +  +P  I NL  L+ +DL
Sbjct: 779 SLTR-----LFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDL 832

Query: 380 SHNMLSGSIPLNIVGCFQLLALIVNNNNLSG----EIQPELDALDSLKILDISNNQISGE 435
           S          + +  F  ++  +++ NLS     E+   ++   +L  LD++       
Sbjct: 833 SG--------CSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQR 884

Query: 436 IPLTLAGLKSLEIVDFSSNNLSGSLNDAI 464
           + L ++ LK LE VDFS     G+L +A 
Sbjct: 885 VSLNISKLKHLETVDFSD---CGALTEAS 910

syringae 6; Provisional. Length = 1153

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	732
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.98
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.91
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.9
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.89
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.88
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.87
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.86
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.83
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.81
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.76
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.76
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.64
PLN03150	623	hypothetical protein; Provisional	99.63
PLN03150	623	hypothetical protein; Provisional	99.63
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.63
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.17
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.16
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.15
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.13
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.1
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.05
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.04
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.03
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.0
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.98
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.92
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.86
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.83
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.82
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.79
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.71
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.66
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.59
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	98.49
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.46
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.44
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.29
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.27
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.16
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.09
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.08
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.07
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.98
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.93
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.9
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.81
PRK15386	426	type III secretion protein GogB; Provisional	97.55
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.51
PRK15386	426	type III secretion protein GogB; Provisional	97.34
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.25
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.2
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.06
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.04
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.95
KOG4341	483	consensus F-box protein containing LRR [General fu	96.61
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.59
KOG4341	483	consensus F-box protein containing LRR [General fu	96.4
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.18
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.88
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.83
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.54
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	94.96
KOG1947	482	consensus Leucine rich repeat proteins, some prote	94.55
KOG1947	482	consensus Leucine rich repeat proteins, some prote	93.98
KOG4308	478	consensus LRR-containing protein [Function unknown	93.32
KOG4308	478	consensus LRR-containing protein [Function unknown	93.12
KOG0473	326	consensus Leucine-rich repeat protein [Function un	91.3
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	90.93
KOG3864	221	consensus Uncharacterized conserved protein [Funct	90.27
KOG0473	326	consensus Leucine-rich repeat protein [Function un	89.91
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	88.44
smart00370	26	LRR Leucine-rich repeats, outliers.	88.44
smart00370	26	LRR Leucine-rich repeats, outliers.	86.45
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	86.45
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	83.18
KOG3864	221	consensus Uncharacterized conserved protein [Funct	82.54

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=2.2e-76  Score=711.61  Aligned_cols=578  Identities=37%  Similarity=0.571  Sum_probs=543.1

Q ss_pred             CHHhHHHHHHHHhcCCCCCCCCCCC-CCCCCCCccceeecCCCCcEEEEEcCCCCCcccccccccCCCCCCEEECCCCCC
Q 004747           40 NLEDKASLLLFKSLVQDPTQKLSSW-VGSNCTNWTGVACNFQTGHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAF  118 (732)
Q Consensus        40 ~~~~~~~l~~~k~~~~~~~~~l~~w-~~~~~c~w~gv~c~~~~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l  118 (732)
                      .++|++||++||+.+.+|.+.+.+| .+++||.|.||+|+. .++|+.|+|++++++|.++..+..+++|++|+|++|++
T Consensus        27 ~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~c~w~gv~c~~-~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~  105 (968)
T PLN00113         27 HAEELELLLSFKSSINDPLKYLSNWNSSADVCLWQGITCNN-SSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQL  105 (968)
T ss_pred             CHHHHHHHHHHHHhCCCCcccCCCCCCCCCCCcCcceecCC-CCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCcc
Confidence            3478889999999998887788999 578999999999984 67999999999999999999999999999999999999


Q ss_pred             CCccccccc-CCCCCCEEECCCCCCCCCCCccccCCCCCCEEeCCCCCCCCCcCCchhhhcccCCcEEEeeCcccccccC
Q 004747          119 TGRISTCFG-GLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIP  197 (732)
Q Consensus       119 ~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~~L~~L~Ls~n~l~~~~p  197 (732)
                      .+.+|..+. .+++|++|+|++|.+++.+|.  +.+++|++|+|++| .+.+.+|..++++ ++|++|++++|.+.+.+|
T Consensus       106 ~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n-~~~~~~p~~~~~l-~~L~~L~L~~n~l~~~~p  181 (968)
T PLN00113        106 SGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNN-MLSGEIPNDIGSF-SSLKVLDLGGNVLVGKIP  181 (968)
T ss_pred             CCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCC-cccccCChHHhcC-CCCCEEECccCcccccCC
Confidence            988887755 999999999999999998885  56899999999999 6778899999999 999999999999999999


Q ss_pred             cccCCCCCCCEEEeecccCCCcccccc---ccccEEECCCCcCccccCchhhcccccCeeeCCCCccccccchhhhccCC
Q 004747          198 ESLYYLKSLKHLDLEKNNLTGNVHDFY---QSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQA  274 (732)
Q Consensus       198 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~---~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~  274 (732)
                      ..+.++++|++|++++|.+.+..|..+   .+|++|++++|.+++.+|..++.+++|++|++++|.+.+.+|..++++++
T Consensus       182 ~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~  261 (968)
T PLN00113        182 NSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKN  261 (968)
T ss_pred             hhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCC
Confidence            999999999999999999999888754   45999999999999999999999999999999999999999999999999


Q ss_pred             CCEEEeccCCCCCcCccccccCcCCcEEEccCCCCCCCCchhhhhcCCCCCccEEeCCCCcccCCCcccccCCCCCCEEe
Q 004747          275 LTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALF  354 (732)
Q Consensus       275 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~  354 (732)
                      |++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+.   +|+.|++++|.+++.+|..+..+++|+.|+
T Consensus       262 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~---~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~  338 (968)
T PLN00113        262 LQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQ---NLEILHLFSNNFTGKIPVALTSLPRLQVLQ  338 (968)
T ss_pred             CCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCC---CCcEEECCCCccCCcCChhHhcCCCCCEEE
Confidence            99999999999999999999999999999999999999999888777   899999999999999999999999999999


Q ss_pred             ccCccCCCccccccCCCCCCCEEEccCCcCccccCccccCCcCcceeecccccccccCcccccCCCCCcEEEcccCceee
Q 004747          355 LSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISG  434 (732)
Q Consensus       355 Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  434 (732)
                      +++|.+.+.+|..++.+++|+.|++++|.+++.+|..+..+.+|+.|++++|++.+.+|..+..+++|+.|++++|++++
T Consensus       339 L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~  418 (968)
T PLN00113        339 LWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSG  418 (968)
T ss_pred             CcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eccccCCCCCCCCEEEccCCcccccchhhhhcCCCCCEEEcccCCCccccchhhhcCCCCCEEEccCCcCcccCCccccc
Q 004747          435 EIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDGNFN  514 (732)
Q Consensus       435 ~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~ls~N~l~~~~p~~~~~  514 (732)
                      .+|..+..+++|+.|++++|.+++.++..+..+++|+.|++++|++.+.+|..+ ..++|+.|++++|++++.+|..+ .
T Consensus       419 ~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~-~  496 (968)
T PLN00113        419 ELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKL-G  496 (968)
T ss_pred             ECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhh-h
Confidence            999999999999999999999999999999999999999999999999888765 45899999999999998877643 1


Q ss_pred             CccccCcCCCCCCCCCCcccCCCceeEEeEEEeecCCchhhhhhcccceEEEccCCcccccCCcccccccCCceeecccc
Q 004747          515 FSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFN  594 (732)
Q Consensus       515 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N  594 (732)
                                                                 .++.|+.|++++|+++|.+|..+.++++|++|+|++|
T Consensus       497 -------------------------------------------~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N  533 (968)
T PLN00113        497 -------------------------------------------SLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHN  533 (968)
T ss_pred             -------------------------------------------hhhccCEEECcCCcceeeCChHHcCccCCCEEECCCC
Confidence                                                       2678899999999999999999999999999999999


Q ss_pred             cceecCCc-ccCccCCcEEeCCCCcCcccCCcCCCCCCCCCEEEcccCcceeeCCCCCCCCCcCc-cccCCCCCCCCC
Q 004747          595 FLDGQVPG-LYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVPWKQGYQKFPG-AFAGNPNLCLES  670 (732)
Q Consensus       595 ~l~~~ip~-l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~-~~~gn~~lcg~~  670 (732)
                      .++|.+|. +..+++|+.|||++|+++|.+|..+..+++|++||+++|+++|.+|..+++.++.. +|.||+.+||.+
T Consensus       534 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~  611 (968)
T PLN00113        534 QLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGD  611 (968)
T ss_pred             cccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCccccCCc
Confidence            99999998 99999999999999999999999999999999999999999999999999999988 899999999865

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=1.9e-61  Score=581.92  Aligned_cols=510  Identities=36%  Similarity=0.510  Sum_probs=475.0

Q ss_pred             CCCCEEECCCCCCCCcccccccCCCCCCEEECCCCCCCCCCCcccc-CCCCCCEEeCCCCCCCCCcCCchhhhcccCCcE
Q 004747          106 SFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIM-KLRNLRELILKGNPELGGVFPGWVGNFSMNLEK  184 (732)
Q Consensus       106 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~~L~~  184 (732)
                      .+++.|+|++|.+++.++..|..+++|++|+|++|++++.+|..+. .+++|++|+|++| .+.+.+|.  +.+ ++|++
T Consensus        69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n-~l~~~~p~--~~l-~~L~~  144 (968)
T PLN00113         69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNN-NFTGSIPR--GSI-PNLET  144 (968)
T ss_pred             CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCC-ccccccCc--ccc-CCCCE
Confidence            4789999999999999999999999999999999999998888765 9999999999999 56677775  345 89999


Q ss_pred             EEeeCcccccccCcccCCCCCCCEEEeecccCCCcccccc---ccccEEECCCCcCccccCchhhcccccCeeeCCCCcc
Q 004747          185 LDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFY---QSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSV  261 (732)
Q Consensus       185 L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~---~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l  261 (732)
                      |++++|.+++.+|..++++++|++|++++|.+.+..|..+   .+|++|++++|.+++.+|..++++++|++|++++|.+
T Consensus       145 L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l  224 (968)
T PLN00113        145 LDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNL  224 (968)
T ss_pred             EECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCcc
Confidence            9999999999999999999999999999999998888754   5599999999999999999999999999999999999


Q ss_pred             ccccchhhhccCCCCEEEeccCCCCCcCccccccCcCCcEEEccCCCCCCCCchhhhhcCCCCCccEEeCCCCcccCCCc
Q 004747          262 VGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIP  341 (732)
Q Consensus       262 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~L~~L~Ls~n~l~~~~p  341 (732)
                      .+.+|..++++++|++|++++|.+++.+|..+..+++|++|++++|.+.+.+|..+..+.   +|+.|++++|.+.+.+|
T Consensus       225 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~---~L~~L~Ls~n~l~~~~p  301 (968)
T PLN00113        225 SGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQ---KLISLDLSDNSLSGEIP  301 (968)
T ss_pred             CCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhcc---CcCEEECcCCeeccCCC
Confidence            999999999999999999999999999999999999999999999999999999988877   89999999999999999


Q ss_pred             ccccCCCCCCEEeccCccCCCccccccCCCCCCCEEEccCCcCccccCccccCCcCcceeecccccccccCcccccCCCC
Q 004747          342 LKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDS  421 (732)
Q Consensus       342 ~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~  421 (732)
                      ..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|++.+.+|..+..+++
T Consensus       302 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~  381 (968)
T PLN00113        302 ELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGN  381 (968)
T ss_pred             hhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcEEEcccCceeeeccccCCCCCCCCEEEccCCcccccchhhhhcCCCCCEEEcccCCCccccchhhhcCCCCCEEEccC
Q 004747          422 LKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFST  501 (732)
Q Consensus       422 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~ls~  501 (732)
                      |+.|++++|.+.+.+|..+..+++|+.|++++|++++.+|..+..+++|+.|++++|++++.+|..+..+++|+.|++++
T Consensus       382 L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~  461 (968)
T PLN00113        382 LFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLAR  461 (968)
T ss_pred             CCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcCcccCCcccccCccccCcCCCCCCCCCCcccCCCceeEEeEEEeecCCchhhhhhcccceEEEccCCcccccCCcccc
Q 004747          502 NKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGTIPKGLF  581 (732)
Q Consensus       502 N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~  581 (732)
                      |++.+.+|...                                             ...+|+.||+++|+++|.+|..+.
T Consensus       462 n~~~~~~p~~~---------------------------------------------~~~~L~~L~ls~n~l~~~~~~~~~  496 (968)
T PLN00113        462 NKFFGGLPDSF---------------------------------------------GSKRLENLDLSRNQFSGAVPRKLG  496 (968)
T ss_pred             ceeeeecCccc---------------------------------------------ccccceEEECcCCccCCccChhhh
Confidence            99998777642                                             145788999999999999999999


Q ss_pred             cccCCceeecccccceecCCc-ccCccCCcEEeCCCCcCcccCCcCCCCCCCCCEEEcccCcceeeCCCCCC-CCCcCc-
Q 004747          582 QLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVPWKQG-YQKFPG-  658 (732)
Q Consensus       582 ~l~~L~~L~Ls~N~l~~~ip~-l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~-~~~~~~-  658 (732)
                      ++++|+.|+|++|++++.+|. +.++++|++|+|++|.++|.+|..+..+++|+.||+++|+++|.+|.... +..+.. 
T Consensus       497 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l  576 (968)
T PLN00113        497 SLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQV  576 (968)
T ss_pred             hhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEE
Confidence            999999999999999999998 99999999999999999999999999999999999999999999997533 223333 


Q ss_pred             cccCCCCCC
Q 004747          659 AFAGNPNLC  667 (732)
Q Consensus       659 ~~~gn~~lc  667 (732)
                      .+.+|+..+
T Consensus       577 ~ls~N~l~~  585 (968)
T PLN00113        577 NISHNHLHG  585 (968)
T ss_pred             eccCCccee
Confidence            677787654

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=1.4e-43  Score=347.15  Aligned_cols=472  Identities=29%  Similarity=0.406  Sum_probs=322.3

Q ss_pred             EEEEcCCCCCcccccccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEECCCCCCCCCCCccccCCCCCCEEeCCCC
Q 004747           85 VSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGN  164 (732)
Q Consensus        85 ~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n  164 (732)
                      ..+.++.|.+. .+.+.+.++..|.+|++++|++. ..|++++.+..++.|+.++|+++ .+|..++.+.+|+.++.++|
T Consensus        48 ~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n  124 (565)
T KOG0472|consen   48 QKLILSHNDLE-VLREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSN  124 (565)
T ss_pred             hhhhhccCchh-hccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccc
Confidence            34445555544 23344555555555555555554 34445555555555555555555 45555555555555555555


Q ss_pred             CCCCCcCCchhhhcccCCcEEEeeCcccccccCcccCCCCCCCEEEeecccCCCccccccccccEEECCCCcCccccCch
Q 004747          165 PELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCF  244 (732)
Q Consensus       165 ~~~~~~~p~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~  244 (732)
                      ..  ..+|+.++.+ ..|+.++..+|+++ ..|+.+.++.+|..+++.+                     |.+. ..|+.
T Consensus       125 ~~--~el~~~i~~~-~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~---------------------n~l~-~l~~~  178 (565)
T KOG0472|consen  125 EL--KELPDSIGRL-LDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEG---------------------NKLK-ALPEN  178 (565)
T ss_pred             ce--eecCchHHHH-hhhhhhhccccccc-cCchHHHHHHHHHHhhccc---------------------cchh-hCCHH
Confidence            32  2344444444 44555555555544 3444444444444444444                     4444 33444


Q ss_pred             hhcccccCeeeCCCCccccccchhhhccCCCCEEEeccCCCCCcCccccccCcCCcEEEccCCCCCCCCchhhhhcCCCC
Q 004747          245 AASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKA  324 (732)
Q Consensus       245 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~  324 (732)
                      .-+++.|++||.-.|-+. .+|..++.+.+|.-|++..|++. ..| +|.++..|+++.++.|.+. .+|....  ..+.
T Consensus       179 ~i~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~--~~L~  252 (565)
T KOG0472|consen  179 HIAMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHL--KHLN  252 (565)
T ss_pred             HHHHHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHh--cccc
Confidence            444788888888888776 67888888888888888888887 444 7888888888888888887 5666544  2333


Q ss_pred             CccEEeCCCCcccCCCcccccCCCCCCEEeccCccCCCccccccCCCCCCCEEEccCCcCccccCccccCCcC---ccee
Q 004747          325 GLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQ---LLAL  401 (732)
Q Consensus       325 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~---L~~L  401 (732)
                      ++.+||+..|+++ ..|+.+..+.+|.+||+++|.++ .+|..++++ +|+.|-+.+|.+. .+-..+..+..   |++|
T Consensus       253 ~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlr-TiRr~ii~~gT~~vLKyL  328 (565)
T KOG0472|consen  253 SLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLR-TIRREIISKGTQEVLKYL  328 (565)
T ss_pred             cceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchH-HHHHHHHcccHHHHHHHH
Confidence            7888888888888 78888888888888888888888 566778888 8888888888775 22222222211   1221


Q ss_pred             ec--cccccc----c---------cCcccccCCCCCcEEEcccCceeeeccccCCCCCC---CCEEEccCCcccccchhh
Q 004747          402 IV--NNNNLS----G---------EIQPELDALDSLKILDISNNQISGEIPLTLAGLKS---LEIVDFSSNNLSGSLNDA  463 (732)
Q Consensus       402 ~l--~~n~l~----~---------~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~---L~~L~Ls~N~l~~~~~~~  463 (732)
                      .=  ..-.++    |         ........+.+.+.|++++-+++ .+|........   ...++++.|++. .+|..
T Consensus       329 rs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~  406 (565)
T KOG0472|consen  329 RSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKR  406 (565)
T ss_pred             HHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHh-hhhhh
Confidence            11  000000    0         01111234567889999999998 56655433333   788999999998 67877


Q ss_pred             hhcCCCCCEEEcccCCCccccchhhhcCCCCCEEEccCCcCcccCCcccccCccccCcCCCCCCCCCCcccCCCceeEEe
Q 004747          464 ITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRI  543 (732)
Q Consensus       464 ~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  543 (732)
                      +..+..+.+.-+..|+..+.+|..++.+++|..|++++|.+. .+|.+.+.                             
T Consensus       407 L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~-----------------------------  456 (565)
T KOG0472|consen  407 LVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGS-----------------------------  456 (565)
T ss_pred             hHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hcchhhhh-----------------------------
Confidence            777766655444444444588999999999999999999875 46655422                             


Q ss_pred             EEEeecCCchhhhhhcccceEEEccCCcccccCCcccccccCCceeecccccceecCCc-ccCccCCcEEeCCCCcCccc
Q 004747          544 SVTAIDTNELSFNYQLFSAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQ  622 (732)
Q Consensus       544 ~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~-l~~l~~L~~LdLs~N~l~~~  622 (732)
                                     +..|+.||+|.|+|. .+|..+..+..++.+-.++|++....|+ +.+|.+|.+|||.+|.+. .
T Consensus       457 ---------------lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~  519 (565)
T KOG0472|consen  457 ---------------LVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-Q  519 (565)
T ss_pred             ---------------hhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-h
Confidence                           566899999999998 8999999999999998899999877777 999999999999999999 8


Q ss_pred             CCcCCCCCCCCCEEEcccCcce
Q 004747          623 IPGNISSLQELTLLNLSYNSFS  644 (732)
Q Consensus       623 ip~~l~~l~~L~~L~ls~N~l~  644 (732)
                      ||..+++|++|++|++++|+|.
T Consensus       520 IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  520 IPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             CChhhccccceeEEEecCCccC
Confidence            8889999999999999999999

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=7.4e-38  Score=320.04  Aligned_cols=364  Identities=24%  Similarity=0.223  Sum_probs=249.4

Q ss_pred             CCCEEECCCCCCCCcccccccCCCCCCEEECCCCCCCCCCCccccCCCCCCEEeCCCCCCCCCcCCchhhhcccCCcEEE
Q 004747          107 FLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLD  186 (732)
Q Consensus       107 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~~L~~L~  186 (732)
                      .-+.||+++|++...-+..|.++++|+.+++.+|.++ .+|...+...+|+.|+|.+| .++..-...+..+ +.|++||
T Consensus        79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N-~I~sv~se~L~~l-~alrslD  155 (873)
T KOG4194|consen   79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHN-LISSVTSEELSAL-PALRSLD  155 (873)
T ss_pred             ceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeecc-ccccccHHHHHhH-hhhhhhh
Confidence            4466888888888777778888888888888888887 66766666667888888888 5555555556666 6778888


Q ss_pred             eeCcccccccCcccCCCCCCCEEEeecccCCCccccccc---cccEEECCCCcCccccCchhhcccccCeeeCCCCcccc
Q 004747          187 FSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQ---SLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVG  263 (732)
Q Consensus       187 Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~---~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~  263 (732)
                      ||.|.++..--.+|..-.++++|+|++|.|+..-...|.   +|.+|.|+.|+++...+..|.++++|+.|+|..|++.-
T Consensus       156 LSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iri  235 (873)
T KOG4194|consen  156 LSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRI  235 (873)
T ss_pred             hhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceee
Confidence            888877754445566667778888888877765554443   46777777777775555666667777777777777663


Q ss_pred             ccchhhhccCCCCEEEeccCCCCCcCccccccCcCCcEEEccCCCCCCCCchhhhhcCCCCCccEEeCCCCcccCCCccc
Q 004747          264 GIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLK  343 (732)
Q Consensus       264 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~  343 (732)
                      .---.|.++++|+.|.+..|.+.......|..+.++++|+|+.|+++..-..++.+++   .|+.|++|+|.+...-++.
T Consensus       236 ve~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt---~L~~L~lS~NaI~rih~d~  312 (873)
T KOG4194|consen  236 VEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLT---SLEQLDLSYNAIQRIHIDS  312 (873)
T ss_pred             ehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccc---hhhhhccchhhhheeecch
Confidence            3344566777777777777777655556667777777777777777655555555555   6777777777776666666


Q ss_pred             ccCCCCCCEEeccCccCCCccccccCCCCCCCEEEccCCcCccccCccccCCcCcceeecccccccccCcc---cccCCC
Q 004747          344 ITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQP---ELDALD  420 (732)
Q Consensus       344 l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~---~~~~l~  420 (732)
                      +..+++|++|+|++|+++...+..|..+..|++|+|++|++.-.-...|.++.+|++|++++|.+++.+.+   .|.+++
T Consensus       313 WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~  392 (873)
T KOG4194|consen  313 WSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLP  392 (873)
T ss_pred             hhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccch
Confidence            66677777777777777766666666677777777777776654455566666777777777766655433   355666


Q ss_pred             CCcEEEcccCceeeeccccCCCCCCCCEEEccCCcccccchhhhhcCCCCCEEEccc
Q 004747          421 SLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIAR  477 (732)
Q Consensus       421 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~  477 (732)
                      +|+.|++.+|++......+|.++..|+.|||.+|.|..+.|.+|..+ .|+.|.+..
T Consensus       393 ~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nS  448 (873)
T KOG4194|consen  393 SLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNS  448 (873)
T ss_pred             hhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcc
Confidence            77777777777764444566667777777777777666666666666 666665544

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=2.1e-40  Score=324.81  Aligned_cols=451  Identities=28%  Similarity=0.376  Sum_probs=358.1

Q ss_pred             cEEEEEcCCCCCcccccccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEECCCCCCCCCCCccccCCCCCCEEeCC
Q 004747           83 HVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILK  162 (732)
Q Consensus        83 ~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls  162 (732)
                      -++.+++..+.+. ++|++++.+..++.++.++|++. .+|..++.+.+|+.|+.++|.+. ..|+.++.+..|..++..
T Consensus        69 ~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~~  145 (565)
T KOG0472|consen   69 CLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLEDLDAT  145 (565)
T ss_pred             ceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee-ecCchHHHHhhhhhhhcc
Confidence            4678889999887 77899999999999999999998 78889999999999999999999 678889999999999999


Q ss_pred             CCCCCCCcCCchhhhcccCCcEEEeeCcccccccCcccCCCCCCCEEEeecccCCCccccccccccEEECCCCcCccccC
Q 004747          163 GNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLP  242 (732)
Q Consensus       163 ~n~~~~~~~p~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~  242 (732)
                      +|+.  ...|..++.+ .+|..+++.+|.+.. .|+..-+++.|++||...|-+.                      .+|
T Consensus       146 ~N~i--~slp~~~~~~-~~l~~l~~~~n~l~~-l~~~~i~m~~L~~ld~~~N~L~----------------------tlP  199 (565)
T KOG0472|consen  146 NNQI--SSLPEDMVNL-SKLSKLDLEGNKLKA-LPENHIAMKRLKHLDCNSNLLE----------------------TLP  199 (565)
T ss_pred             cccc--ccCchHHHHH-HHHHHhhccccchhh-CCHHHHHHHHHHhcccchhhhh----------------------cCC
Confidence            9955  5678888888 899999999999995 4545555999999999888765                      788


Q ss_pred             chhhcccccCeeeCCCCccccccchhhhccCCCCEEEeccCCCCCcCccc-cccCcCCcEEEccCCCCCCCCchhhhhcC
Q 004747          243 CFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPR-LVFFEKLLLLDLSFNDLSGPLPSKIAQTT  321 (732)
Q Consensus       243 ~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~  321 (732)
                      ..++.+.+|..|++..|++. ..| .|.++..|++|.++.|++. .+|.+ ..++.++.+||+.+|+++ ..|+.+.-+.
T Consensus       200 ~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLr  275 (565)
T KOG0472|consen  200 PELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLR  275 (565)
T ss_pred             hhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhh
Confidence            88999999999999999998 566 7999999999999999998 45554 458999999999999999 7899988887


Q ss_pred             CCCCccEEeCCCCcccCCCcccccCCCCCCEEeccCccCCCccccccCCCC---CCCEE-------EccCCc----Cccc
Q 004747          322 EKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLT---YLQVI-------DLSHNM----LSGS  387 (732)
Q Consensus       322 ~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~---~L~~L-------~Ls~n~----l~~~  387 (732)
                         +|++||+|+|.++ .+|..++++ .|+.|.+.+|.+. .+-..+-+..   -|++|       .++...    -.+.
T Consensus       276 ---sL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlr-TiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t  349 (565)
T KOG0472|consen  276 ---SLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLR-TIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMT  349 (565)
T ss_pred             ---hhhhhcccCCccc-cCCcccccc-eeeehhhcCCchH-HHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCC
Confidence               8999999999999 688899999 9999999999875 2221111110   01111       111110    0001


Q ss_pred             -cCc---cccCCcCcceeecccccccccCcccccCCC--CCcEEEcccCceeeeccccCCCCCCCCE-EEccCCcccccc
Q 004747          388 -IPL---NIVGCFQLLALIVNNNNLSGEIQPELDALD--SLKILDISNNQISGEIPLTLAGLKSLEI-VDFSSNNLSGSL  460 (732)
Q Consensus       388 -~p~---~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~--~L~~L~L~~n~l~~~~p~~~~~l~~L~~-L~Ls~N~l~~~~  460 (732)
                       .+.   ......+.+.|++++-+++....+.|....  -....+++.|++. ++|..+..++.+.+ +++++|.++ .+
T Consensus       350 ~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~is-fv  427 (565)
T KOG0472|consen  350 LPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKIS-FV  427 (565)
T ss_pred             CCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccc-cc
Confidence             111   122345678888888888876665554332  3789999999998 78887777666554 455655554 78


Q ss_pred             hhhhhcCCCCCEEEcccCCCccccchhhhcCCCCCEEEccCCcCcccCCcccccCccccCcCCCCCCCCCCcccCCCcee
Q 004747          461 NDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMV  540 (732)
Q Consensus       461 ~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  540 (732)
                      |..+..+++|..|++++|.+. .+|..++.+..|+.+|++.|+|. .+|.+++                           
T Consensus       428 ~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y---------------------------  478 (565)
T KOG0472|consen  428 PLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLY---------------------------  478 (565)
T ss_pred             hHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHh---------------------------
Confidence            888999999999999999887 88999999999999999999885 4555432                           


Q ss_pred             EEeEEEeecCCchhhhhhcccceEEEccCCcccccCCcccccccCCceeecccccceecCCcccCccCCcEEeCCCCcCc
Q 004747          541 IRISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLT  620 (732)
Q Consensus       541 ~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~l~~l~~L~~LdLs~N~l~  620 (732)
                                       .+..++.+-.++|++...-|..+.++.+|+.|||.+|.+...+|.++++++|++|+|++|.+.
T Consensus       479 -----------------~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  479 -----------------ELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             -----------------hHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhCChhhccccceeEEEecCCccC
Confidence                             144455666677899744444599999999999999999854445999999999999999998

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=3e-37  Score=315.55  Aligned_cols=367  Identities=25%  Similarity=0.237  Sum_probs=280.6

Q ss_pred             CCCEEECCCCCCCCCCCccccCCCCCCEEeCCCCCCCCCcCCchhhhcccCCcEEEeeCcccccccCcccCCCCCCCEEE
Q 004747          131 GLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLD  210 (732)
Q Consensus       131 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~  210 (732)
                      .-+.||+|+|.++...+..|.++++|+.+++..|..  ..+|...+.. .+|+.|+|.+|.|+..-.+.+..++.|+.||
T Consensus        79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~L--t~IP~f~~~s-ghl~~L~L~~N~I~sv~se~L~~l~alrslD  155 (873)
T KOG4194|consen   79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNEL--TRIPRFGHES-GHLEKLDLRHNLISSVTSEELSALPALRSLD  155 (873)
T ss_pred             ceeeeeccccccccCcHHHHhcCCcceeeeeccchh--hhcccccccc-cceeEEeeeccccccccHHHHHhHhhhhhhh
Confidence            345688888888877777888888888888888833  4566655554 6788888888888777677788888888888


Q ss_pred             eecccCCCcccccccc---ccEEECCCCcCccccCchhhcccccCeeeCCCCccccccchhhhccCCCCEEEeccCCCCC
Q 004747          211 LEKNNLTGNVHDFYQS---LLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNY  287 (732)
Q Consensus       211 Ls~n~l~~~~~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~  287 (732)
                      ||.|.|+......|+.   +++|+|++|.++..-...|.++.+|.+|.|+.|.++...+..|.++++|+.|+|..|++.-
T Consensus       156 LSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iri  235 (873)
T KOG4194|consen  156 LSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRI  235 (873)
T ss_pred             hhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceee
Confidence            8888887766666654   8888888888887777778888888888888888886666677778888888888888764


Q ss_pred             cCccccccCcCCcEEEccCCCCCCCCchhhhhcCCCCCccEEeCCCCcccCCCcccccCCCCCCEEeccCccCCCccccc
Q 004747          288 EISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPAR  367 (732)
Q Consensus       288 ~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~  367 (732)
                      .---.|.++++|+.|.|..|++...-...|..+.   ++++|+|+.|+++..-..++.+++.|+.|++++|.|...-++.
T Consensus       236 ve~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~---kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~  312 (873)
T KOG4194|consen  236 VEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLE---KMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDS  312 (873)
T ss_pred             ehhhhhcCchhhhhhhhhhcCcccccCcceeeec---ccceeecccchhhhhhcccccccchhhhhccchhhhheeecch
Confidence            4345677788888888888887744444455555   7888888888887666667778888888888888887777777


Q ss_pred             cCCCCCCCEEEccCCcCccccCccccCCcCcceeecccccccccCcccccCCCCCcEEEcccCceeeeccc---cCCCCC
Q 004747          368 IGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPL---TLAGLK  444 (732)
Q Consensus       368 l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~---~~~~l~  444 (732)
                      +..+++|++|+|++|+++...+.+|..+..|++|.+++|++...-...|..+++|++|||++|.++..+.+   .|.+++
T Consensus       313 WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~  392 (873)
T KOG4194|consen  313 WSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLP  392 (873)
T ss_pred             hhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccch
Confidence            77788888888888888877777788888888888888888777666777888888888888888765543   467788


Q ss_pred             CCCEEEccCCcccccchhhhhcCCCCCEEEcccCCCccccchhhhcCCCCCEEEccCCcC
Q 004747          445 SLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKF  504 (732)
Q Consensus       445 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~ls~N~l  504 (732)
                      +|+.|++.+|++..+...+|..+++|++|||.+|.+...-|.+|..+ .|+.|-+..-.|
T Consensus       393 ~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssf  451 (873)
T KOG4194|consen  393 SLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSF  451 (873)
T ss_pred             hhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccce
Confidence            88888888888886666778888888888888888877777777777 777777665444

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=100.00  E-value=2.5e-37  Score=332.78  Aligned_cols=396  Identities=26%  Similarity=0.286  Sum_probs=222.0

Q ss_pred             EEEEEcCCCCCcccccccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEECCCCCCCCCCCccccCCCCCCEEeCCC
Q 004747           84 VVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKG  163 (732)
Q Consensus        84 v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~  163 (732)
                      ++.|+++.|.+-...-+...+.-+|+.||+++|++. ..|..+..+.+|+.|+++.|.|. ..|.+.+++.+|++++|.+
T Consensus        23 ~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~  100 (1081)
T KOG0618|consen   23 LQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKN  100 (1081)
T ss_pred             HHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheecc
Confidence            556666666544222223334445778888877775 56666777778888888888777 5667777788888888887


Q ss_pred             CCCCCCcCCchhhhcccCCcEEEeeCcccccccCcccCCCCCCCEEEeecccCCCccccccccccEEECCCCcCccccCc
Q 004747          164 NPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPC  243 (732)
Q Consensus       164 n~~~~~~~p~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~  243 (732)
                      |..  ...|..+..+ .+|++|++++|.+. .+|..+..++.++.+..++|......+...  ++.+++..|.+.+.++.
T Consensus       101 n~l--~~lP~~~~~l-knl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~--ik~~~l~~n~l~~~~~~  174 (1081)
T KOG0618|consen  101 NRL--QSLPASISEL-KNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQRLGQTS--IKKLDLRLNVLGGSFLI  174 (1081)
T ss_pred             chh--hcCchhHHhh-hcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhhhcccc--chhhhhhhhhcccchhc
Confidence            733  4567777777 77888888888776 677777777777777777772221111111  56666666666666666


Q ss_pred             hhhcccccCeeeCCCCccccccchhhhccCCCCEEEeccCCCCCcCccccccCcCCcEEEccCCCCCCCCchhhhhcCCC
Q 004747          244 FAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEK  323 (732)
Q Consensus       244 ~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~  323 (732)
                      .+..+++  .|+|.+|.+.   -..+..+.+|+.|....|++...    -..-++|+.|+.++|.++...+.     ...
T Consensus       175 ~i~~l~~--~ldLr~N~~~---~~dls~~~~l~~l~c~rn~ls~l----~~~g~~l~~L~a~~n~l~~~~~~-----p~p  240 (1081)
T KOG0618|consen  175 DIYNLTH--QLDLRYNEME---VLDLSNLANLEVLHCERNQLSEL----EISGPSLTALYADHNPLTTLDVH-----PVP  240 (1081)
T ss_pred             chhhhhe--eeecccchhh---hhhhhhccchhhhhhhhcccceE----EecCcchheeeeccCcceeeccc-----ccc
Confidence            6665555  5677777665   12345566666666666665421    12235666666666666522111     111


Q ss_pred             CCccEEeCCCCcccCCCcccccCCCCCCEEeccCccCCCccccccCCCCCCCEEEccCCcCccccCccccCCcCcceeec
Q 004747          324 AGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIV  403 (732)
Q Consensus       324 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l  403 (732)
                      .+|+++++++|+++ .+|.|++.+.+|+.++..+|+++ .+|..+...++|+.|++..|.+. .+|....+...|++|++
T Consensus       241 ~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL  317 (1081)
T KOG0618|consen  241 LNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDL  317 (1081)
T ss_pred             ccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeee
Confidence            25666666666666 45566666666666666666664 55555666666666666666665 44444444555555555


Q ss_pred             ccccccccCcccccCCCC-CcEEEcccCceeeeccccCCCCCCCCEEEccCCcccccchhhhhcCCCCCEEEcccCCCcc
Q 004747          404 NNNNLSGEIQPELDALDS-LKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSG  482 (732)
Q Consensus       404 ~~n~l~~~~~~~~~~l~~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  482 (732)
                      ..|++....+..+..... |+.|+.+.|++.......=...+.|+.|.+.+|.+++..-..+.++.+|+.|+|++|++..
T Consensus       318 ~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~  397 (1081)
T KOG0618|consen  318 QSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNS  397 (1081)
T ss_pred             hhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccccccc
Confidence            555554433322222222 4444444444442111111123344445555555544443344444444444444444441


Q ss_pred             ccchhhhcCCCCCEEEccCCcC
Q 004747          483 NLPNWLFSFQAIQMMDFSTNKF  504 (732)
Q Consensus       483 ~~p~~~~~~~~L~~L~ls~N~l  504 (732)
                      .....+.+++.|++|++|+|++
T Consensus       398 fpas~~~kle~LeeL~LSGNkL  419 (1081)
T KOG0618|consen  398 FPASKLRKLEELEELNLSGNKL  419 (1081)
T ss_pred             CCHHHHhchHHhHHHhcccchh
Confidence            1122233444444444444444

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.98  E-value=7.3e-35  Score=313.81  Aligned_cols=395  Identities=28%  Similarity=0.322  Sum_probs=326.5

Q ss_pred             cEEEEEcCCCCCcccccccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEECCCCCCCCCCCccccCCCCCCEEeCC
Q 004747           83 HVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILK  162 (732)
Q Consensus        83 ~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls  162 (732)
                      ++.+||++++.+. ..|..+..+.+|+.|+++.|.+. ..|....++.+|++|.|.+|.+. ..|..+..+++|++|+++
T Consensus        46 ~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS  122 (1081)
T KOG0618|consen   46 KLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLS  122 (1081)
T ss_pred             eeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccc
Confidence            4889999988765 77888999999999999999997 67788999999999999999988 789999999999999999


Q ss_pred             CCCCCCCcCCchhhhcccCCcEEEeeCcccccccCcccCCCCCCCEEEeecccCCCccccccccccE-EECCCCcCcccc
Q 004747          163 GNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLV-LNLGSNRFSGTL  241 (732)
Q Consensus       163 ~n~~~~~~~p~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~L~~-L~L~~n~l~~~~  241 (732)
                      +|.+  +.+|.-+..+ +.++.+..++|...    ..++... .+++++..|.+.+.++.....+++ |+|.+|.+.   
T Consensus       123 ~N~f--~~~Pl~i~~l-t~~~~~~~s~N~~~----~~lg~~~-ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~---  191 (1081)
T KOG0618|consen  123 FNHF--GPIPLVIEVL-TAEEELAASNNEKI----QRLGQTS-IKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNEME---  191 (1081)
T ss_pred             hhcc--CCCchhHHhh-hHHHHHhhhcchhh----hhhcccc-chhhhhhhhhcccchhcchhhhheeeecccchhh---
Confidence            9954  6788888777 88899999999322    1233333 889999999999988888877777 999999886   


Q ss_pred             CchhhcccccCeeeCCCCccccccchhhhccCCCCEEEeccCCCCCcCccccccCcCCcEEEccCCCCCCCCchhhhhcC
Q 004747          242 PCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTT  321 (732)
Q Consensus       242 ~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~  321 (732)
                      -..+.++.+|+.|....|++....    -.-++|+.|+.++|.++...+  -....+|+++++++|+++ .+|+++..+.
T Consensus       192 ~~dls~~~~l~~l~c~rn~ls~l~----~~g~~l~~L~a~~n~l~~~~~--~p~p~nl~~~dis~n~l~-~lp~wi~~~~  264 (1081)
T KOG0618|consen  192 VLDLSNLANLEVLHCERNQLSELE----ISGPSLTALYADHNPLTTLDV--HPVPLNLQYLDISHNNLS-NLPEWIGACA  264 (1081)
T ss_pred             hhhhhhccchhhhhhhhcccceEE----ecCcchheeeeccCcceeecc--ccccccceeeecchhhhh-cchHHHHhcc
Confidence            334677888999999999886432    235789999999998873322  223568999999999999 5779999888


Q ss_pred             CCCCccEEeCCCCcccCCCcccccCCCCCCEEeccCccCCCccccccCCCCCCCEEEccCCcCccccCccccCC-c-Ccc
Q 004747          322 EKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGC-F-QLL  399 (732)
Q Consensus       322 ~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~-~-~L~  399 (732)
                         +|+.++..+|.++ .+|..+....+|+.|.+.+|.+. .+|.....+++|+.|+|..|++. ..|+.+... . .+.
T Consensus       265 ---nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~  338 (1081)
T KOG0618|consen  265 ---NLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLN  338 (1081)
T ss_pred             ---cceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHH
Confidence               8999999999997 78988999999999999999998 67777888999999999999997 556544332 2 367


Q ss_pred             eeecccccccccCcccccCCCCCcEEEcccCceeeeccccCCCCCCCCEEEccCCcccccchhhhhcCCCCCEEEcccCC
Q 004747          400 ALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNK  479 (732)
Q Consensus       400 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~  479 (732)
                      .+..+.|++.......-..++.|+.|.+.+|.+++..-..+.+.++|++|+|++|++.......+.++..|+.|+|++|+
T Consensus       339 ~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNk  418 (1081)
T KOG0618|consen  339 TLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNK  418 (1081)
T ss_pred             HHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccch
Confidence            77777787765543333456789999999999998877788999999999999999986666677899999999999999


Q ss_pred             CccccchhhhcCCCCCEEEccCCcCc
Q 004747          480 LSGNLPNWLFSFQAIQMMDFSTNKFM  505 (732)
Q Consensus       480 l~~~~p~~~~~~~~L~~L~ls~N~l~  505 (732)
                      ++ .+|..+..+..|++|...+|++.
T Consensus       419 L~-~Lp~tva~~~~L~tL~ahsN~l~  443 (1081)
T KOG0618|consen  419 LT-TLPDTVANLGRLHTLRAHSNQLL  443 (1081)
T ss_pred             hh-hhhHHHHhhhhhHHHhhcCCcee
Confidence            98 78898888888888888888775

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=2.3e-34  Score=296.06  Aligned_cols=366  Identities=25%  Similarity=0.353  Sum_probs=261.3

Q ss_pred             CcEEEEEcCCCCCcc-cccccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEECCCCCCCCCCCccccCCCCCCEEe
Q 004747           82 GHVVSINLTDTSLSG-QVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELI  160 (732)
Q Consensus        82 ~~v~~L~L~~~~l~~-~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~  160 (732)
                      .-|+.+|+++|.++| ..|.+...+++++.|.|...++. .+|+.++.+.+|++|.+++|++. .+-..++.++.||.++
T Consensus         7 pFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv~   84 (1255)
T KOG0444|consen    7 PFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSVI   84 (1255)
T ss_pred             ceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHHh
Confidence            357888999999985 67888888999999999888876 68888999999999999999887 3445678888999999


Q ss_pred             CCCCCCCCCcCCchhhhcccCCcEEEeeCcccccccCcccCCCCCCCEEEeecccCCCccccccccccEEECCCCcCccc
Q 004747          161 LKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGT  240 (732)
Q Consensus       161 Ls~n~~~~~~~p~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~  240 (732)
                      +.+|+.-...+|..+..+ ..|..||||+|++. +.|..+..-+++-.|+||+|+|..++...                 
T Consensus        85 ~R~N~LKnsGiP~diF~l-~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~l-----------------  145 (1255)
T KOG0444|consen   85 VRDNNLKNSGIPTDIFRL-KDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSL-----------------  145 (1255)
T ss_pred             hhccccccCCCCchhccc-ccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchH-----------------
Confidence            998877777788888888 78888888888887 77888888888888888887776433332                 


Q ss_pred             cCchhhcccccCeeeCCCCccccccchhhhccCCCCEEEeccCCCCCcCccccccCcCCcEEEccCCCCC-CCCchhhhh
Q 004747          241 LPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLS-GPLPSKIAQ  319 (732)
Q Consensus       241 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~-~~~p~~~~~  319 (732)
                          +.+++.|-.||||+|++. ..|..+..+..|++|+|++|.+.-..-..+-.+++|++|.+++.+-+ ..+|.++..
T Consensus       146 ----finLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~  220 (1255)
T KOG0444|consen  146 ----FINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDD  220 (1255)
T ss_pred             ----HHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhh
Confidence                345555556666666655 34555556666666666666554333333444555666666655422 245555555


Q ss_pred             cCCCCCccEEeCCCCcccCCCcccccCCCCCCEEeccCccCCCccccccCCCCCCCEEEccCCcCccccCccccCCcCcc
Q 004747          320 TTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLL  399 (732)
Q Consensus       320 l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~  399 (732)
                      +.   +|..+|+|.|.+. .+|+.+..+++|+.|+||+|+++ ++....+...+|+.|++|.|+++ .+|.+++.+++|+
T Consensus       221 l~---NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~  294 (1255)
T KOG0444|consen  221 LH---NLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLT  294 (1255)
T ss_pred             hh---hhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHH
Confidence            55   6666777777766 56666667777777777777766 34444455566777777777776 6677777777777


Q ss_pred             eeecccccccc-cCcccccCCCCCcEEEcccCceeeeccccCCCCCCCCEEEccCCcccccchhhhhcCCCCCEEEcccC
Q 004747          400 ALIVNNNNLSG-EIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARN  478 (732)
Q Consensus       400 ~L~l~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N  478 (732)
                      .|.+.+|+++- -+|..++.+..|+.+..++|.+. .+|..+..|..|+.|.|+.|++. ++|+.+.-++.|+.||+..|
T Consensus       295 kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreN  372 (1255)
T KOG0444|consen  295 KLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLREN  372 (1255)
T ss_pred             HHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCC
Confidence            77777776653 25666777778888888888776 77778888888888888888776 67777877888888888887


Q ss_pred             CCc
Q 004747          479 KLS  481 (732)
Q Consensus       479 ~l~  481 (732)
                      +--
T Consensus       373 pnL  375 (1255)
T KOG0444|consen  373 PNL  375 (1255)
T ss_pred             cCc
Confidence            644

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=2.2e-34  Score=296.18  Aligned_cols=360  Identities=30%  Similarity=0.406  Sum_probs=242.5

Q ss_pred             cEEECCCCcCc-cccCchhhcccccCeeeCCCCccccccchhhhccCCCCEEEeccCCCCCcCccccccCcCCcEEEccC
Q 004747          228 LVLNLGSNRFS-GTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSF  306 (732)
Q Consensus       228 ~~L~L~~n~l~-~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~  306 (732)
                      +-+|+++|.++ +.+|.....++.++.|.|...++. .+|..++.+.+|++|.+++|++. .+-..+..++.|+.+++..
T Consensus        10 rGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv~~R~   87 (1255)
T KOG0444|consen   10 RGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSVIVRD   87 (1255)
T ss_pred             ecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHHhhhc
Confidence            33455555555 356777777777777777777665 56777777777777777777765 3445566677777777777


Q ss_pred             CCCCC-CCchhhhhcCCCCCccEEeCCCCcccCCCcccccCCCCCCEEeccCccCCCccccccCCCCCCCEEEccCCcCc
Q 004747          307 NDLSG-PLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLS  385 (732)
Q Consensus       307 n~l~~-~~p~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~  385 (732)
                      |++.. .+|..+..+.   .|..||||+|+++ ..|..+..-+++-.|+||+|+|....-..+-+++.|-+||||+|++.
T Consensus        88 N~LKnsGiP~diF~l~---dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe  163 (1255)
T KOG0444|consen   88 NNLKNSGIPTDIFRLK---DLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE  163 (1255)
T ss_pred             cccccCCCCchhcccc---cceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh
Confidence            76642 3566666665   6777777777776 56777777777777777777776333334556777777777777776


Q ss_pred             cccCccccCCcCcceeecccccccccCcccccCCCCCcEEEcccCcee-eeccccCCCCCCCCEEEccCCcccccchhhh
Q 004747          386 GSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQIS-GEIPLTLAGLKSLEIVDFSSNNLSGSLNDAI  464 (732)
Q Consensus       386 ~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~  464 (732)
                       .+|..+..+..|++|.+++|.+...--..+..+++|++|.+++.+-+ ..+|.++..+.+|..+|+|.|.+. .+|+.+
T Consensus       164 -~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecl  241 (1255)
T KOG0444|consen  164 -MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECL  241 (1255)
T ss_pred             -hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHH
Confidence             56666777777777777777766554444556667777777766543 346667777777777777777776 667777


Q ss_pred             hcCCCCCEEEcccCCCccccchhhhcCCCCCEEEccCCcCcccCCcccccCccccCcCCCCCCCCCCcccCCCceeEEeE
Q 004747          465 TKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRIS  544 (732)
Q Consensus       465 ~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  544 (732)
                      .++.+|+.|+|++|+++ .+.-....+.+|++|++|.|+++ .+|..+                                
T Consensus       242 y~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~av--------------------------------  287 (1255)
T KOG0444|consen  242 YKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAV--------------------------------  287 (1255)
T ss_pred             hhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHH--------------------------------
Confidence            77777777777777776 44445556677777777777775 344432                                


Q ss_pred             EEeecCCchhhhhhcccceEEEccCCcccc-cCCcccccccCCceeecccccceecCCc-ccCccCCcEEeCCCCcCccc
Q 004747          545 VTAIDTNELSFNYQLFSAVGMDLSDNLLHG-TIPKGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQ  622 (732)
Q Consensus       545 ~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g-~ip~~l~~l~~L~~L~Ls~N~l~~~ip~-l~~l~~L~~LdLs~N~l~~~  622 (732)
                                  ..++.|+.|.+.+|+++- -||..|+.+.+|+++..++|.+. ..|. +..+..|+.|.|++|++. .
T Consensus       288 ------------cKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-T  353 (1255)
T KOG0444|consen  288 ------------CKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-T  353 (1255)
T ss_pred             ------------hhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-e
Confidence                        125566666677776652 27777777777777777777775 5555 777777777777777776 5


Q ss_pred             CCcCCCCCCCCCEEEcccCcc
Q 004747          623 IPGNISSLQELTLLNLSYNSF  643 (732)
Q Consensus       623 ip~~l~~l~~L~~L~ls~N~l  643 (732)
                      .|+.+.-++.|+.||+..|+=
T Consensus       354 LPeaIHlL~~l~vLDlreNpn  374 (1255)
T KOG0444|consen  354 LPEAIHLLPDLKVLDLRENPN  374 (1255)
T ss_pred             chhhhhhcCCcceeeccCCcC
Confidence            677777777777777777753

>PLN03210 Resistant to P

Probab=99.91  E-value=6.2e-23  Score=247.90  Aligned_cols=339  Identities=19%  Similarity=0.208  Sum_probs=214.5

Q ss_pred             ccccCCCCCCEEeCCCCC-----CCCCcCCchhhhcccCCcEEEeeCcccccccCcccCCCCCCCEEEeecccCCCcccc
Q 004747          148 DAIMKLRNLRELILKGNP-----ELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHD  222 (732)
Q Consensus       148 ~~~~~l~~L~~L~Ls~n~-----~~~~~~p~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~  222 (732)
                      .+|.++++|+.|.+..+.     .....+|..+..++.+|+.|++.++.+. .+|..+ ...+|++|++++|++......
T Consensus       552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~~L~~~  629 (1153)
T PLN03210        552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLEKLWDG  629 (1153)
T ss_pred             HHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCccccccccc
Confidence            345555666666554431     1112344444444445666666666554 445544 345666666666655432221


Q ss_pred             --ccccccEEECCCCcCccccCchhhcccccCeeeCCCCccccccchhhhccCCCCEEEeccCCCCCcCccccccCcCCc
Q 004747          223 --FYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLL  300 (732)
Q Consensus       223 --~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~  300 (732)
                        .+.+|+.|+|+++.....+|. +..+++|++|++++|.....+|..++++++|+.|++++|..-..+|..+ ++++|+
T Consensus       630 ~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~  707 (1153)
T PLN03210        630 VHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLY  707 (1153)
T ss_pred             cccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCC
Confidence              234466666665544344443 5667777777777776656677777777777777777765444555544 577777


Q ss_pred             EEEccCCCCCCCCchhhhhcCCCCCccEEeCCCCcccCCCcccccCCCCCCEEeccCccCC-------CccccccCCCCC
Q 004747          301 LLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLI-------GEIPARIGNLTY  373 (732)
Q Consensus       301 ~L~Ls~n~l~~~~p~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~-------~~~p~~l~~l~~  373 (732)
                      .|++++|...+.+|..   .   .+|+.|++++|.+. .+|..+ .+++|+.|++.++...       ...+......++
T Consensus       708 ~L~Lsgc~~L~~~p~~---~---~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~s  779 (1153)
T PLN03210        708 RLNLSGCSRLKSFPDI---S---TNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPS  779 (1153)
T ss_pred             EEeCCCCCCccccccc---c---CCcCeeecCCCccc-cccccc-cccccccccccccchhhccccccccchhhhhcccc
Confidence            7777777554444432   1   26777788777776 566544 4667777777664321       111122233467


Q ss_pred             CCEEEccCCcCccccCccccCCcCcceeecccccccccCcccccCCCCCcEEEcccCceeeeccccCCCCCCCCEEEccC
Q 004747          374 LQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSS  453 (732)
Q Consensus       374 L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~  453 (732)
                      |+.|++++|...+.+|..+.++++|+.|++++|...+.+|... .+++|+.|++++|.....+|..   .++|++|++++
T Consensus       780 L~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~  855 (1153)
T PLN03210        780 LTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSR  855 (1153)
T ss_pred             chheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECCC
Confidence            8888888887777778888888888888888776555666554 6778888888887655455532   35788888888


Q ss_pred             CcccccchhhhhcCCCCCEEEcccCCCccccchhhhcCCCCCEEEccCCc
Q 004747          454 NNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNK  503 (732)
Q Consensus       454 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~ls~N~  503 (732)
                      |.++ .+|.++..+++|+.|++++|+--..+|..+..+++|+.+++++|.
T Consensus       856 n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        856 TGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             CCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence            8887 567788888888888888855444577777778888888888775

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.90  E-value=1e-22  Score=246.11  Aligned_cols=337  Identities=22%  Similarity=0.220  Sum_probs=209.2

Q ss_pred             chhhcccccCeeeCCCCc------cccccchhhhccC-CCCEEEeccCCCCCcCccccccCcCCcEEEccCCCCCCCCch
Q 004747          243 CFAASAMSLTVLKLDNNS------VVGGIPTCIASLQ-ALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPS  315 (732)
Q Consensus       243 ~~~~~~~~L~~L~Ls~n~------l~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~  315 (732)
                      ..|..+.+|+.|.+..+.      +...+|..+..++ +|+.|++.++.+. .+|..+ ...+|+.|++++|.+. .++.
T Consensus       552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~  628 (1153)
T PLN03210        552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWD  628 (1153)
T ss_pred             HHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-cccc
Confidence            445667777777775543      2233555555553 4777777777665 445554 4577777777777766 4454


Q ss_pred             hhhhcCCCCCccEEeCCCCcccCCCcccccCCCCCCEEeccCccCCCccccccCCCCCCCEEEccCCcCccccCccccCC
Q 004747          316 KIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGC  395 (732)
Q Consensus       316 ~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~  395 (732)
                      .+..+.   +|+.|+++++...+.+|. +..+++|+.|++++|.....+|..++++++|+.|++++|...+.+|..+ ++
T Consensus       629 ~~~~l~---~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l  703 (1153)
T PLN03210        629 GVHSLT---GLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NL  703 (1153)
T ss_pred             ccccCC---CCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CC
Confidence            444444   777777777654445653 6667777778877776666777777777777888877766555666554 66


Q ss_pred             cCcceeecccccccccCcccccCCCCCcEEEcccCceeeeccccCCCCCCCCEEEccCCccc-------ccchhhhhcCC
Q 004747          396 FQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLS-------GSLNDAITKWT  468 (732)
Q Consensus       396 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~-------~~~~~~~~~l~  468 (732)
                      ++|+.|++++|...+.+|..   ..+|+.|++++|.+. .+|..+ .+++|++|++.++...       ...+..+...+
T Consensus       704 ~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~  778 (1153)
T PLN03210        704 KSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSP  778 (1153)
T ss_pred             CCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-cccccccccccccchhhccccccccchhhhhccc
Confidence            77777777777655555432   356777778777776 455544 4667777777653321       11122223346


Q ss_pred             CCCEEEcccCCCccccchhhhcCCCCCEEEccCCcCcccCCcccccCccccCcCCCCCCCCCCcccCCCceeEEeEEEee
Q 004747          469 NLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAI  548 (732)
Q Consensus       469 ~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  548 (732)
                      +|+.|++++|...+.+|..+..+++|+.|++++|...+.+|...                                    
T Consensus       779 sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~------------------------------------  822 (1153)
T PLN03210        779 SLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI------------------------------------  822 (1153)
T ss_pred             cchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC------------------------------------
Confidence            77778888777776777777778888888887776544555432                                    


Q ss_pred             cCCchhhhhhcccceEEEccCCcccccCCcccccccCCceeecccccceecCCc-ccCccCCcEEeCCCC-cCcccCCcC
Q 004747          549 DTNELSFNYQLFSAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHN-SLTGQIPGN  626 (732)
Q Consensus       549 ~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~-l~~l~~L~~LdLs~N-~l~~~ip~~  626 (732)
                               .+++|+.|++++|.....+|..   ..+|++|+|++|.++ .+|. +..+++|++|++++| ++. .+|..
T Consensus       823 ---------~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~-~l~~~  888 (1153)
T PLN03210        823 ---------NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQ-RVSLN  888 (1153)
T ss_pred             ---------CccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcC-ccCcc
Confidence                     1445566666665444344432   245666666666665 3444 666666666666663 333 35555


Q ss_pred             CCCCCCCCEEEcccCc
Q 004747          627 ISSLQELTLLNLSYNS  642 (732)
Q Consensus       627 l~~l~~L~~L~ls~N~  642 (732)
                      +..++.|+.++++++.
T Consensus       889 ~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        889 ISKLKHLETVDFSDCG  904 (1153)
T ss_pred             cccccCCCeeecCCCc
Confidence            5666666666666653

syringae 6; Provisional

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.89  E-value=6.8e-25  Score=215.99  Aligned_cols=405  Identities=19%  Similarity=0.173  Sum_probs=261.7

Q ss_pred             ccccEEECCCCcCccccCchhhcccccCeeeCCCCccccccchhhhccCCCCEEEecc-CCCCCcCccccccCcCCcEEE
Q 004747          225 QSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSH-NHLNYEISPRLVFFEKLLLLD  303 (732)
Q Consensus       225 ~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~-n~l~~~~~~~l~~l~~L~~L~  303 (732)
                      +.-..++|..|+|+...+..|..+++|+.|||++|+|+.+.|++|.++++|.+|.+.+ |+|+......|+++..|+.|.
T Consensus        67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl  146 (498)
T KOG4237|consen   67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL  146 (498)
T ss_pred             CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence            3466777778888877778888888888999999988888888888888887777666 888866667788888888888


Q ss_pred             ccCCCCCCCCchhhhhcCCCCCccEEeCCCCcccCCCcc-cccCCCCCCEEeccCccCCC------------ccccccCC
Q 004747          304 LSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPL-KITELKSLQALFLSNNLLIG------------EIPARIGN  370 (732)
Q Consensus       304 Ls~n~l~~~~p~~~~~l~~~~~L~~L~Ls~n~l~~~~p~-~l~~l~~L~~L~Ls~n~l~~------------~~p~~l~~  370 (732)
                      +.-|++.....+.+..+.   ++..|.+.+|.+. .++. .+..+..++.+.+..|.+..            ..|..++.
T Consensus       147 lNan~i~Cir~~al~dL~---~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsg  222 (498)
T KOG4237|consen  147 LNANHINCIRQDALRDLP---SLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSG  222 (498)
T ss_pred             cChhhhcchhHHHHHHhh---hcchhcccchhhh-hhccccccchhccchHhhhcCccccccccchhhhHHhhchhhccc
Confidence            888888876666777776   7888888888887 4444 77778888888888776321            11222222


Q ss_pred             CCCCCEEEccCCcCccccCccccCC-cCcceeeccccccccc-CcccccCCCCCcEEEcccCceeeeccccCCCCCCCCE
Q 004747          371 LTYLQVIDLSHNMLSGSIPLNIVGC-FQLLALIVNNNNLSGE-IQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEI  448 (732)
Q Consensus       371 l~~L~~L~Ls~n~l~~~~p~~~~~~-~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~  448 (732)
                      .....-..+.++++...-+..|... ..+..-..+.+...+. ....|..+++|++|+|++|+++++-+.+|.+...+++
T Consensus       223 arc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~e  302 (498)
T KOG4237|consen  223 ARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQE  302 (498)
T ss_pred             ceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhh
Confidence            2222333333344332222222221 1111111222222222 2345788999999999999999888888999999999


Q ss_pred             EEccCCcccccchhhhhcCCCCCEEEcccCCCccccchhhhcCCCCCEEEccCCcCcccCCcccccCccccCcCCCCCCC
Q 004747          449 VDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSM  528 (732)
Q Consensus       449 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~  528 (732)
                      |.|..|++...-...|.++..|+.|+|.+|+|+...|..|....+|..|.+-.|++...---.++..+..-..  ..+..
T Consensus       303 L~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~--~~~~~  380 (498)
T KOG4237|consen  303 LYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKS--VVGNP  380 (498)
T ss_pred             hhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhCC--CCCCC
Confidence            9999999987667788889999999999999998888889899999999998888754332222221110000  00000


Q ss_pred             CC-CcccCCCcee--EEeEEEeecCCch-------hhhhhcccce-EEEccCCcccccCCcccccccCCceeecccccce
Q 004747          529 PA-KSFVLPRSMV--IRISVTAIDTNEL-------SFNYQLFSAV-GMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLD  597 (732)
Q Consensus       529 ~~-~~~~~~~~~~--~~~~~~~~~~~~~-------~~~~~l~~L~-~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~  597 (732)
                      +. .+........  .........+.+-       .....++-+. +...|+..+. .+|..+-  ..-.+|++.+|.++
T Consensus       381 ~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk-~lp~~iP--~d~telyl~gn~~~  457 (498)
T KOG4237|consen  381 RCQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLK-LLPRGIP--VDVTELYLDGNAIT  457 (498)
T ss_pred             CCCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchh-hcCCCCC--chhHHHhcccchhc
Confidence            00 0000000000  0000000011000       0011233332 2345555555 6666553  36678999999998


Q ss_pred             ecCCcccCccCCcEEeCCCCcCcccCCcCCCCCCCCCEEEcccC
Q 004747          598 GQVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYN  641 (732)
Q Consensus       598 ~~ip~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N  641 (732)
                       .+|.- .+..| .+|+|+|+++...-..|++++.|.+|-+|||
T Consensus       458 -~vp~~-~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn  498 (498)
T KOG4237|consen  458 -SVPDE-LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN  498 (498)
T ss_pred             -ccCHH-HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence             66652 45677 8999999998777778999999999999987

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.88  E-value=4.1e-22  Score=223.32  Aligned_cols=262  Identities=25%  Similarity=0.282  Sum_probs=156.8

Q ss_pred             CCCEEEeccCCCCCcCccccccCcCCcEEEccCCCCCCCCchhhhhcCCCCCccEEeCCCCcccCCCcccccCCCCCCEE
Q 004747          274 ALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQAL  353 (732)
Q Consensus       274 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L  353 (732)
                      .-..|+++++.++ .+|+.+.  ++|+.|++++|+++ .+|..      .++|++|++++|+++ .+|..   .++|+.|
T Consensus       202 ~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~l------p~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L  267 (788)
T PRK15387        202 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPAL------PPELRTLEVSGNQLT-SLPVL---PPGLLEL  267 (788)
T ss_pred             CCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCCC------CCCCcEEEecCCccC-cccCc---cccccee
Confidence            4567788888777 4666554  36777777777776 34431      126777777777776 34532   3466667


Q ss_pred             eccCccCCCccccccCCCCCCCEEEccCCcCccccCccccCCcCcceeecccccccccCcccccCCCCCcEEEcccCcee
Q 004747          354 FLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQIS  433 (732)
Q Consensus       354 ~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  433 (732)
                      ++++|.++ .+|..   .++|+.|++++|+++ .+|.                           ..++|+.|++++|+++
T Consensus       268 ~Ls~N~L~-~Lp~l---p~~L~~L~Ls~N~Lt-~LP~---------------------------~p~~L~~LdLS~N~L~  315 (788)
T PRK15387        268 SIFSNPLT-HLPAL---PSGLCKLWIFGNQLT-SLPV---------------------------LPPGLQELSVSDNQLA  315 (788)
T ss_pred             eccCCchh-hhhhc---hhhcCEEECcCCccc-cccc---------------------------cccccceeECCCCccc
Confidence            77776665 33332   244556666666665 2332                           1234555555555555


Q ss_pred             eeccccCCCCCCCCEEEccCCcccccchhhhhcCCCCCEEEcccCCCccccchhhhcCCCCCEEEccCCcCcccCCcccc
Q 004747          434 GEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDGNF  513 (732)
Q Consensus       434 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~ls~N~l~~~~p~~~~  513 (732)
                      + +|..   ..+|+.|++++|.+++ +|..   ..+|++|++++|+++ .+|..   ..+|+.|++++|++++ +|..  
T Consensus       316 ~-Lp~l---p~~L~~L~Ls~N~L~~-LP~l---p~~Lq~LdLS~N~Ls-~LP~l---p~~L~~L~Ls~N~L~~-LP~l--  380 (788)
T PRK15387        316 S-LPAL---PSELCKLWAYNNQLTS-LPTL---PSGLQELSVSDNQLA-SLPTL---PSELYKLWAYNNRLTS-LPAL--  380 (788)
T ss_pred             c-CCCC---cccccccccccCcccc-cccc---ccccceEecCCCccC-CCCCC---Ccccceehhhcccccc-Cccc--
Confidence            3 2321   1245555666666553 3321   135666666666666 23432   2456666666666652 3321  


Q ss_pred             cCccccCcCCCCCCCCCCcccCCCceeEEeEEEeecCCchhhhhhcccceEEEccCCcccccCCcccccccCCceeeccc
Q 004747          514 NFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSF  593 (732)
Q Consensus       514 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~  593 (732)
                                                                   ...|+.|++++|+|+ .+|..   .++|+.|++++
T Consensus       381 ---------------------------------------------~~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~  411 (788)
T PRK15387        381 ---------------------------------------------PSGLKELIVSGNRLT-SLPVL---PSELKELMVSG  411 (788)
T ss_pred             ---------------------------------------------ccccceEEecCCccc-CCCCc---ccCCCEEEccC
Confidence                                                         234566777777777 46643   35677788888


Q ss_pred             ccceecCCcccCccCCcEEeCCCCcCcccCCcCCCCCCCCCEEEcccCcceeeCCC
Q 004747          594 NFLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVPW  649 (732)
Q Consensus       594 N~l~~~ip~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~  649 (732)
                      |++++ +|.+  ..+|+.|++++|+|+ .+|..+.+++.|+.|++++|+|+|.+|.
T Consensus       412 N~Lss-IP~l--~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~  463 (788)
T PRK15387        412 NRLTS-LPML--PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ  463 (788)
T ss_pred             CcCCC-CCcc--hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHH
Confidence            88874 5652  246777888888887 6777788888888888888888877664

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.87  E-value=4.1e-24  Score=210.51  Aligned_cols=409  Identities=22%  Similarity=0.219  Sum_probs=245.8

Q ss_pred             cCCcEEEeeCcccccccCcccCCCCCCCEEEeecccCCCcccccccc----ccEEECCCCcCccccCchhhcccccCeee
Q 004747          180 MNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQS----LLVLNLGSNRFSGTLPCFAASAMSLTVLK  255 (732)
Q Consensus       180 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~----L~~L~L~~n~l~~~~~~~~~~~~~L~~L~  255 (732)
                      ..-..++|..|+|+...|.+|+.+++|+.|||++|.|+.+.|+.|..    ++.++.++|+|+......|+.+..++.|.
T Consensus        67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl  146 (498)
T KOG4237|consen   67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL  146 (498)
T ss_pred             CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence            34556777777777666667777777777777777777777776654    23334444777765566778888888888


Q ss_pred             CCCCccccccchhhhccCCCCEEEeccCCCCCcCccccccCcCCcEEEccCCCCCC------------CCchhhhhcCCC
Q 004747          256 LDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSG------------PLPSKIAQTTEK  323 (732)
Q Consensus       256 Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~------------~~p~~~~~l~~~  323 (732)
                      +.-|++.-...+.|..+++|..|.+.+|.+...--..+..+..++.+.+..|.+..            ..|..++...  
T Consensus       147 lNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgar--  224 (498)
T KOG4237|consen  147 LNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGAR--  224 (498)
T ss_pred             cChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccce--
Confidence            88888877777788888888888888888764433467777888888887776321            0111111111  


Q ss_pred             CCccEEeCCCCcccCCCcccccC-CCCCCEEeccCccCCCccc-cccCCCCCCCEEEccCCcCccccCccccCCcCccee
Q 004747          324 AGLVLLDLSHNRFSGEIPLKITE-LKSLQALFLSNNLLIGEIP-ARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLAL  401 (732)
Q Consensus       324 ~~L~~L~Ls~n~l~~~~p~~l~~-l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L  401 (732)
                       ...-..+.+.++...-+..+.. +..+..=-.+.+...+.-| ..|..+++|+.|++++|++++..+.+|.+...+++|
T Consensus       225 -c~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL  303 (498)
T KOG4237|consen  225 -CVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQEL  303 (498)
T ss_pred             -ecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhh
Confidence             1111222233332222222211 1112111122233333333 357888899999999999988888888888888888


Q ss_pred             ecccccccccCcccccCCCCCcEEEcccCceeeeccccCCCCCCCCEEEccCCcccccc-hhhhhcCCCCCEEEcccCCC
Q 004747          402 IVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSL-NDAITKWTNLKYFSIARNKL  480 (732)
Q Consensus       402 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~L~~N~l  480 (732)
                      .+..|++...-...|.++..|+.|+|++|+|+...|..|..+.+|.+|++-.|.+-..- -.|++.+       ++++.-
T Consensus       304 ~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~W-------lr~~~~  376 (498)
T KOG4237|consen  304 YLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEW-------LRKKSV  376 (498)
T ss_pred             hcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHH-------HhhCCC
Confidence            88888888777777888888999999999998888888888888888888888765321 2333332       112221


Q ss_pred             ccccchhhhcCCCCCEEEccCCcCccc---CCcccccCccccCcCCCCCCCCCCcccCCCceeEEeEEEeecCCchhhhh
Q 004747          481 SGNLPNWLFSFQAIQMMDFSTNKFMGF---IPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNY  557 (732)
Q Consensus       481 ~~~~p~~~~~~~~L~~L~ls~N~l~~~---~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  557 (732)
                      .|. |. ...-..++.++++++.+...   -|++.     ....  .....+.. .+.  ....+.+...++..   -..
T Consensus       377 ~~~-~~-Cq~p~~~~~~~~~dv~~~~~~c~~~ee~-----~~~~--s~~cP~~c-~c~--~tVvRcSnk~lk~l---p~~  441 (498)
T KOG4237|consen  377 VGN-PR-CQSPGFVRQIPISDVAFGDFRCGGPEEL-----GCLT--SSPCPPPC-TCL--DTVVRCSNKLLKLL---PRG  441 (498)
T ss_pred             CCC-CC-CCCCchhccccchhccccccccCCcccc-----CCCC--CCCCCCCc-chh--hhhHhhcccchhhc---CCC
Confidence            111 11 11222345555655554321   11110     0000  00000000 000  00000000000000   001


Q ss_pred             hcccceEEEccCCcccccCCcccccccCCceeecccccceecCCc-ccCccCCcEEeCCCC
Q 004747          558 QLFSAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHN  617 (732)
Q Consensus       558 ~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~-l~~l~~L~~LdLs~N  617 (732)
                      ....-+.+.+.+|.++ .+|.+  .+.+| .+|+|+|+++..--. +.++++|.+|-||+|
T Consensus       442 iP~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn  498 (498)
T KOG4237|consen  442 IPVDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN  498 (498)
T ss_pred             CCchhHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence            1233467889999998 89988  67888 999999999854444 889999999999987

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.86  E-value=2.1e-21  Score=217.62  Aligned_cols=264  Identities=25%  Similarity=0.341  Sum_probs=169.1

Q ss_pred             cccCeeeCCCCccccccchhhhccCCCCEEEeccCCCCCcCccccccCcCCcEEEccCCCCCCCCchhhhhcCCCCCccE
Q 004747          249 MSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVL  328 (732)
Q Consensus       249 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~L~~  328 (732)
                      ..-..|+++++.++ .+|..+.  ++|+.|++.+|+++. +|.   .+++|++|++++|+++ .+|...      ++|+.
T Consensus       201 ~~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lt-sLP~lp------~sL~~  266 (788)
T PRK15387        201 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPVLP------PGLLE  266 (788)
T ss_pred             CCCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccC-cccCcc------cccce
Confidence            34678999999998 5787765  489999999999984 554   3589999999999999 455421      38999


Q ss_pred             EeCCCCcccCCCcccccCCCCCCEEeccCccCCCccccccCCCCCCCEEEccCCcCccccCccccCCcCcceeecccccc
Q 004747          329 LDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNL  408 (732)
Q Consensus       329 L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l  408 (732)
                      |++++|.++ .+|...   ++|+.|++++|+++ .+|..   .++|+.|++++|.+++ +|..   ..+|+.|.+++|.+
T Consensus       267 L~Ls~N~L~-~Lp~lp---~~L~~L~Ls~N~Lt-~LP~~---p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L  334 (788)
T PRK15387        267 LSIFSNPLT-HLPALP---SGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQL  334 (788)
T ss_pred             eeccCCchh-hhhhch---hhcCEEECcCCccc-ccccc---ccccceeECCCCcccc-CCCC---cccccccccccCcc
Confidence            999999998 566533   57889999999998 45542   4789999999999984 4431   12345555555555


Q ss_pred             cccCcccccCCCCCcEEEcccCceeeeccccCCCCCCCCEEEccCCcccccchhhhhcCCCCCEEEcccCCCccccchhh
Q 004747          409 SGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWL  488 (732)
Q Consensus       409 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~  488 (732)
                      ++ +|..   ..+|+.|++++|++++ +|..                           ..+|+.|++++|++. .+|.. 
T Consensus       335 ~~-LP~l---p~~Lq~LdLS~N~Ls~-LP~l---------------------------p~~L~~L~Ls~N~L~-~LP~l-  380 (788)
T PRK15387        335 TS-LPTL---PSGLQELSVSDNQLAS-LPTL---------------------------PSELYKLWAYNNRLT-SLPAL-  380 (788)
T ss_pred             cc-cccc---ccccceEecCCCccCC-CCCC---------------------------Ccccceehhhccccc-cCccc-
Confidence            43 2210   1234445555544442 2221                           134444555555554 23332 


Q ss_pred             hcCCCCCEEEccCCcCcccCCcccccCccccCcCCCCCCCCCCcccCCCceeEEeEEEeecCCchhhhhhcccceEEEcc
Q 004747          489 FSFQAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVGMDLS  568 (732)
Q Consensus       489 ~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs  568 (732)
                        ..+|+.|++++|++++ +|..                                               ...|+.|+++
T Consensus       381 --~~~L~~LdLs~N~Lt~-LP~l-----------------------------------------------~s~L~~LdLS  410 (788)
T PRK15387        381 --PSGLKELIVSGNRLTS-LPVL-----------------------------------------------PSELKELMVS  410 (788)
T ss_pred             --ccccceEEecCCcccC-CCCc-----------------------------------------------ccCCCEEEcc
Confidence              2345566666666542 2211                                               2345566777


Q ss_pred             CCcccccCCcccccccCCceeecccccceecCCc-ccCccCCcEEeCCCCcCcccCCcCC
Q 004747          569 DNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIPGNI  627 (732)
Q Consensus       569 ~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~-l~~l~~L~~LdLs~N~l~~~ip~~l  627 (732)
                      +|+++ .+|..   ..+|+.|++++|+++ .+|. +.++++|+.|+|++|.+++.+|..+
T Consensus       411 ~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L  465 (788)
T PRK15387        411 GNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL  465 (788)
T ss_pred             CCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence            77766 45543   235666777777776 4565 6677777777777777777666555

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.83  E-value=1e-19  Score=205.67  Aligned_cols=290  Identities=23%  Similarity=0.330  Sum_probs=147.4

Q ss_pred             cCCHHhHHHHHHHHhcCCCCC---CCCCCC-CCCCCCCccc----------------eeecCCCCcEEEEEcCCCCCccc
Q 004747           38 ELNLEDKASLLLFKSLVQDPT---QKLSSW-VGSNCTNWTG----------------VACNFQTGHVVSINLTDTSLSGQ   97 (732)
Q Consensus        38 ~~~~~~~~~l~~~k~~~~~~~---~~l~~w-~~~~~c~w~g----------------v~c~~~~~~v~~L~L~~~~l~~~   97 (732)
                      ...+++.+.+++..+.+.-|.   ..-+.| .+.+.|.-..                |.|.  .+.|+.+...+......
T Consensus        59 ~~~~~~~~~~~~~~~~l~~p~~~~~~~~~~~~~~~fc~~~~~~~~~l~~~~~~~~~tv~~~--~~~vt~l~~~g~~~~~~  136 (754)
T PRK15370         59 TASPEEIKSKFECLRMLAFPAYADNIQYSRGGADQYCILSENSQEILSIVFNTEGYTVEGG--GKSVTYTRVTESEQASS  136 (754)
T ss_pred             CCCHHHHHHHHHHHHHhcCCchhhccccccCCCCcccccCCcchhhheeeecCCceEEecC--CCccccccccccccccc
Confidence            345677778888888887762   223458 5567886443                5563  45666666554322111


Q ss_pred             cc--c--------------------------cc-----cCCCCCCEEECCCCCCCCcccccccCCCCCCEEECCCCCCCC
Q 004747           98 VH--P--------------------------RL-----CKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVG  144 (732)
Q Consensus        98 ~~--~--------------------------~l-----~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~  144 (732)
                      ..  .                          ..     +-..+...|+++++.++ .+|..+.  +.|+.|+|++|.++ 
T Consensus       137 ~~~~~~~~~~~~~w~~w~~~~~~~~~~~r~~a~~r~~~Cl~~~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-  212 (754)
T PRK15370        137 ASGSKDAVNYELIWSEWVKEAPAKEAANREEAVQRMRDCLKNNKTELRLKILGLT-TIPACIP--EQITTLILDNNELK-  212 (754)
T ss_pred             CCCCCChhhHHHHHHHHHhcCCCCccccHHHHHHHHHhhcccCceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-
Confidence            00  0                          00     11234566777776666 3454432  45677777777776 


Q ss_pred             CCCccccCCCCCCEEeCCCCCCCCCcCCchhhhcccCCcEEEeeCcccccccCcccCCCCCCCEEEeecccCCCcccccc
Q 004747          145 VVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFY  224 (732)
Q Consensus       145 ~~p~~~~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~  224 (732)
                      .+|..+.  ++|++|++++|. +. .+|..+.   .+|+.|++++|.+. .+|..+.  ++|+.|++++|+++.......
T Consensus       213 sLP~~l~--~nL~~L~Ls~N~-Lt-sLP~~l~---~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~  282 (754)
T PRK15370        213 SLPENLQ--GNIKTLYANSNQ-LT-SIPATLP---DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKISCLPENLP  282 (754)
T ss_pred             cCChhhc--cCCCEEECCCCc-cc-cCChhhh---ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccCccccccC
Confidence            3444432  467777777663 33 3444332   45666777776666 4555443  356666666666664322223


Q ss_pred             ccccEEECCCCcCccccCchhhcccccCeeeCCCCccccccchhhhccCCCCEEEeccCCCCCcCccccccCcCCcEEEc
Q 004747          225 QSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDL  304 (732)
Q Consensus       225 ~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L  304 (732)
                      .+|+.|++++|++++ +|..+.  ++|+.|++++|.++. +|..+  .++|+.|++++|.+++ +|..+.  ++|+.|++
T Consensus       283 ~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~L  353 (754)
T PRK15370        283 EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTA-LPETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDV  353 (754)
T ss_pred             CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCcccc-CCccc--cccceeccccCCcccc-CChhhc--CcccEEEC
Confidence            346666666666553 332221  245555555555553 33222  2345555555555543 333221  34555555


Q ss_pred             cCCCCCCCCchhhhhcCCCCCccEEeCCCCcccCCCcccccCCCCCCEEeccCccCC
Q 004747          305 SFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLI  361 (732)
Q Consensus       305 s~n~l~~~~p~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~  361 (732)
                      ++|+++ .+|..+.     ++|+.|++++|+++ .+|..+.  ..|+.|++++|++.
T Consensus       354 s~N~L~-~LP~~lp-----~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~  401 (754)
T PRK15370        354 SKNQIT-VLPETLP-----PTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV  401 (754)
T ss_pred             CCCCCC-cCChhhc-----CCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc
Confidence            555554 2333321     14555555555554 2333322  23444455555444

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.81  E-value=8.8e-20  Score=206.16  Aligned_cols=118  Identities=26%  Similarity=0.434  Sum_probs=70.8

Q ss_pred             ccCeeeCCCCccccccchhhhccCCCCEEEeccCCCCCcCccccccCcCCcEEEccCCCCCCCCchhhhhcCCCCCccEE
Q 004747          250 SLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLL  329 (732)
Q Consensus       250 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~L~~L  329 (732)
                      +.+.|+++++.++ .+|..+.  ++|+.|++++|+++ .+|..+.  ++|+.|++++|+++ .+|..+..     +|+.|
T Consensus       179 ~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~~-----~L~~L  246 (754)
T PRK15370        179 NKTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLPD-----TIQEM  246 (754)
T ss_pred             CceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhhc-----cccEE
Confidence            4567777777766 3454442  46777777777776 3444332  46777777777766 44544332     56677


Q ss_pred             eCCCCcccCCCcccccCCCCCCEEeccCccCCCccccccCCCCCCCEEEccCCcCc
Q 004747          330 DLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLS  385 (732)
Q Consensus       330 ~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~  385 (732)
                      ++++|.+. .+|..+.  ++|+.|++++|+++ .+|..+.  ++|+.|++++|+++
T Consensus       247 ~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt  296 (754)
T PRK15370        247 ELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR  296 (754)
T ss_pred             ECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc
Confidence            77777766 4555443  35666666666666 3454442  35666666666665

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.76  E-value=8.5e-20  Score=192.06  Aligned_cols=279  Identities=24%  Similarity=0.210  Sum_probs=145.3

Q ss_pred             EEEccCCCCC-CCCchhhhhcCCCCCccEEeCCCCcccCC----CcccccCCCCCCEEeccCccCCC------ccccccC
Q 004747          301 LLDLSFNDLS-GPLPSKIAQTTEKAGLVLLDLSHNRFSGE----IPLKITELKSLQALFLSNNLLIG------EIPARIG  369 (732)
Q Consensus       301 ~L~Ls~n~l~-~~~p~~~~~l~~~~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~------~~p~~l~  369 (732)
                      .|+|..+.++ +.....+..+.   .|+.++++++.++..    ++..+...+++++++++++.+.+      .++..+.
T Consensus         2 ~l~L~~~~l~~~~~~~~~~~l~---~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~   78 (319)
T cd00116           2 QLSLKGELLKTERATELLPKLL---CLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLT   78 (319)
T ss_pred             ccccccCcccccchHHHHHHHh---hccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHH
Confidence            3556666665 23333333344   567777777766432    33344455556666666665542      1223344


Q ss_pred             CCCCCCEEEccCCcCccccCccccCCcCcceeecccccccccCcccccCCCCCcEEEcccCceee----eccccCCCC-C
Q 004747          370 NLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISG----EIPLTLAGL-K  444 (732)
Q Consensus       370 ~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~----~~p~~~~~l-~  444 (732)
                      .+++|+.|++++|.+.+..+..+..+..                    . ++|+.|++++|.+++    .+...+..+ +
T Consensus        79 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~--------------------~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~  137 (319)
T cd00116          79 KGCGLQELDLSDNALGPDGCGVLESLLR--------------------S-SSLQELKLNNNGLGDRGLRLLAKGLKDLPP  137 (319)
T ss_pred             hcCceeEEEccCCCCChhHHHHHHHHhc--------------------c-CcccEEEeeCCccchHHHHHHHHHHHhCCC
Confidence            4555555555555554333322222211                    1 236666666665552    122233344 5


Q ss_pred             CCCEEEccCCccccc----chhhhhcCCCCCEEEcccCCCccc----cchhhhcCCCCCEEEccCCcCcccCCcccccCc
Q 004747          445 SLEIVDFSSNNLSGS----LNDAITKWTNLKYFSIARNKLSGN----LPNWLFSFQAIQMMDFSTNKFMGFIPDGNFNFS  516 (732)
Q Consensus       445 ~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~----~p~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~  516 (732)
                      +|++|++++|.+++.    ++..+..+++|++|++++|.+++.    ++..+..+++|+.|++++|.+++.....+.   
T Consensus       138 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~---  214 (319)
T cd00116         138 ALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALA---  214 (319)
T ss_pred             CceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHH---
Confidence            666666666666632    233444556666777766666532    233344455677777777666432111100   


Q ss_pred             cccCcCCCCCCCCCCcccCCCceeEEeEEEeecCCchhhhhhcccceEEEccCCcccccCCccccc-----ccCCceeec
Q 004747          517 LNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGTIPKGLFQ-----LQGLEYLNL  591 (732)
Q Consensus       517 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~-----l~~L~~L~L  591 (732)
                                                           .....+++|++||+++|.+++.....+..     .+.|++|++
T Consensus       215 -------------------------------------~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l  257 (319)
T cd00116         215 -------------------------------------ETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSL  257 (319)
T ss_pred             -------------------------------------HHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEc
Confidence                                                 01112456677777777766433322222     257777777


Q ss_pred             cccccee----cCCc-ccCccCCcEEeCCCCcCccc----CCcCCCCC-CCCCEEEcccCcc
Q 004747          592 SFNFLDG----QVPG-LYRLRSLRALDLSHNSLTGQ----IPGNISSL-QELTLLNLSYNSF  643 (732)
Q Consensus       592 s~N~l~~----~ip~-l~~l~~L~~LdLs~N~l~~~----ip~~l~~l-~~L~~L~ls~N~l  643 (732)
                      ++|.++.    .+.. +..+++|+++|+++|.++..    ....+... +.|+++++.+|++
T Consensus       258 ~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (319)
T cd00116         258 SCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF  319 (319)
T ss_pred             cCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence            7777751    1222 44556777777777777744    33334444 5677777777754

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.76  E-value=3e-19  Score=187.94  Aligned_cols=261  Identities=22%  Similarity=0.291  Sum_probs=135.5

Q ss_pred             hhhcccccCeeeCCCCccccc----cchhhhccCCCCEEEeccCCCCC------cCccccccCcCCcEEEccCCCCCCCC
Q 004747          244 FAASAMSLTVLKLDNNSVVGG----IPTCIASLQALTHLNLSHNHLNY------EISPRLVFFEKLLLLDLSFNDLSGPL  313 (732)
Q Consensus       244 ~~~~~~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~------~~~~~l~~l~~L~~L~Ls~n~l~~~~  313 (732)
                      .+..+.+|++|+++++.++..    ++..+...+++++++++++.+.+      .++..+..+++|+.|++++|.+.+..
T Consensus        18 ~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~   97 (319)
T cd00116          18 LLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDG   97 (319)
T ss_pred             HHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhH
Confidence            334444455555555554321    22333344455555555554431      12233444556666666666555444


Q ss_pred             chhhhhcCCCCCccEEeCCCCcccC----CCcccccCC-CCCCEEeccCccCCCc----cccccCCCCCCCEEEccCCcC
Q 004747          314 PSKIAQTTEKAGLVLLDLSHNRFSG----EIPLKITEL-KSLQALFLSNNLLIGE----IPARIGNLTYLQVIDLSHNML  384 (732)
Q Consensus       314 p~~~~~l~~~~~L~~L~Ls~n~l~~----~~p~~l~~l-~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l  384 (732)
                      +..+..+...++|++|++++|.+++    .+...+..+ ++|+.|++++|.+++.    ++..+..+++|+.|++++|.+
T Consensus        98 ~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l  177 (319)
T cd00116          98 CGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGI  177 (319)
T ss_pred             HHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCC
Confidence            4444443311236666666665542    122233344 5666666666666532    223344555666666666665


Q ss_pred             ccc----cCccccCCcCcceeeccccccccc----CcccccCCCCCcEEEcccCceeeeccccC-----CCCCCCCEEEc
Q 004747          385 SGS----IPLNIVGCFQLLALIVNNNNLSGE----IQPELDALDSLKILDISNNQISGEIPLTL-----AGLKSLEIVDF  451 (732)
Q Consensus       385 ~~~----~p~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~p~~~-----~~l~~L~~L~L  451 (732)
                      ++.    ++..+...++|+.|++++|.+.+.    +...+..+++|++|++++|.+++.....+     ...+.|+.|++
T Consensus       178 ~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l  257 (319)
T cd00116         178 GDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSL  257 (319)
T ss_pred             chHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEc
Confidence            531    222233344566666666555432    22334556677777777777664222111     12367777777


Q ss_pred             cCCcccc----cchhhhhcCCCCCEEEcccCCCccc----cchhhhcC-CCCCEEEccCCcC
Q 004747          452 SSNNLSG----SLNDAITKWTNLKYFSIARNKLSGN----LPNWLFSF-QAIQMMDFSTNKF  504 (732)
Q Consensus       452 s~N~l~~----~~~~~~~~l~~L~~L~L~~N~l~~~----~p~~~~~~-~~L~~L~ls~N~l  504 (732)
                      ++|.+++    .+...+..+++|+++++++|.+...    +...+... +.++.+++.+|++
T Consensus       258 ~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (319)
T cd00116         258 SCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF  319 (319)
T ss_pred             cCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence            7777762    2233445566777777777777633    33344444 5677777777653

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.64  E-value=5.3e-18  Score=148.76  Aligned_cols=184  Identities=27%  Similarity=0.338  Sum_probs=120.2

Q ss_pred             cccCCCCCCEEECCCCCCCCcccccccCCCCCCEEECCCCCCCCCCCccccCCCCCCEEeCCCCCCCCCcCCchhhhccc
Q 004747          101 RLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSM  180 (732)
Q Consensus       101 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~  180 (732)
                      .+.++.+.+.|.||+|+++ .+|..+..+.+|++|++++|+|+ ..|.+++.+++|+.|+++-|                
T Consensus        28 gLf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmn----------------   89 (264)
T KOG0617|consen   28 GLFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMN----------------   89 (264)
T ss_pred             cccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchh----------------
Confidence            4556666777777777776 44555777777777777777776 55666666666666555544                


Q ss_pred             CCcEEEeeCcccccccCcccCCCCCCCEEEeecccCCCccccccccccEEECCCCcCccccCchhhcccccCeeeCCCCc
Q 004747          181 NLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNS  260 (732)
Q Consensus       181 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~  260 (732)
                                ++. ..|..|+.++.|+.|||.+|++...                    .+|..|..++.|+.|++++|.
T Consensus        90 ----------rl~-~lprgfgs~p~levldltynnl~e~--------------------~lpgnff~m~tlralyl~dnd  138 (264)
T KOG0617|consen   90 ----------RLN-ILPRGFGSFPALEVLDLTYNNLNEN--------------------SLPGNFFYMTTLRALYLGDND  138 (264)
T ss_pred             ----------hhh-cCccccCCCchhhhhhccccccccc--------------------cCCcchhHHHHHHHHHhcCCC
Confidence                      443 5677777777777777777766421                    455566666777777777777


Q ss_pred             cccccchhhhccCCCCEEEeccCCCCCcCccccccCcCCcEEEccCCCCCCCCchhhhhcCCCCCccEEeCCCCcc
Q 004747          261 VVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRF  336 (732)
Q Consensus       261 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~L~~L~Ls~n~l  336 (732)
                      +. .+|..++++++|+.|.+.+|.+- ..|.+++.++.|++|.+.+|+++ .+|+.++.+....+=+.+.+.+|..
T Consensus       139 fe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l~l~~~k~v~r~E~NPw  211 (264)
T KOG0617|consen  139 FE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANLDLVGNKQVMRMEENPW  211 (264)
T ss_pred             cc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhhhhhhhHHHHhhhhCCC
Confidence            76 56677777777777777777665 56777777777777777777776 5666665543222333344444444

>PLN03150 hypothetical protein; Provisional

Probab=99.63  E-value=4.8e-16  Score=175.58  Aligned_cols=116  Identities=37%  Similarity=0.530  Sum_probs=103.7

Q ss_pred             cceEEEccCCcccccCCcccccccCCceeecccccceecCCc-ccCccCCcEEeCCCCcCcccCCcCCCCCCCCCEEEcc
Q 004747          561 SAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLS  639 (732)
Q Consensus       561 ~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~-l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls  639 (732)
                      .++.|+|++|.++|.+|..++.+++|+.|+|++|.++|.+|. ++.+++|+.|||++|+++|.+|+.++++++|++||++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            467899999999999999999999999999999999999998 9999999999999999999999999999999999999


Q ss_pred             cCcceeeCCCCCCC--CCcCc-cccCCCCCCCCCCCCCCC
Q 004747          640 YNSFSGFVPWKQGY--QKFPG-AFAGNPNLCLESSHGECN  676 (732)
Q Consensus       640 ~N~l~g~ip~~~~~--~~~~~-~~~gn~~lcg~~~~~~c~  676 (732)
                      +|+++|.+|....-  ..... .+.||+.+||.|....|.
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~  538 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG  538 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence            99999999975321  12223 789999999977666775

>PLN03150 hypothetical protein; Provisional

Probab=99.63  E-value=2e-15  Score=170.59  Aligned_cols=152  Identities=32%  Similarity=0.575  Sum_probs=128.6

Q ss_pred             CCHHhHHHHHHHHhcCCCCCCCCCCCCCCCCC----CccceeecCC--C--CcEEEEEcCCCCCcccccccccCCCCCCE
Q 004747           39 LNLEDKASLLLFKSLVQDPTQKLSSWVGSNCT----NWTGVACNFQ--T--GHVVSINLTDTSLSGQVHPRLCKLSFLEF  110 (732)
Q Consensus        39 ~~~~~~~~l~~~k~~~~~~~~~l~~w~~~~~c----~w~gv~c~~~--~--~~v~~L~L~~~~l~~~~~~~l~~l~~L~~  110 (732)
                      ...+|.+||+.+|+.+.++..  .+|.++.|+    .|.||.|...  .  .+|+.|+|+++.+.|.+|..+.++++|+.
T Consensus       369 t~~~~~~aL~~~k~~~~~~~~--~~W~g~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~~i~~L~~L~~  446 (623)
T PLN03150        369 TLLEEVSALQTLKSSLGLPLR--FGWNGDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQS  446 (623)
T ss_pred             cCchHHHHHHHHHHhcCCccc--CCCCCCCCCCcccccccceeeccCCCCceEEEEEECCCCCccccCCHHHhCCCCCCE
Confidence            345678899999999876532  489877774    7999999532  2  25899999999999999999999999999


Q ss_pred             EECCCCCCCCcccccccCCCCCCEEECCCCCCCCCCCccccCCCCCCEEeCCCCCCCCCcCCchhhhcccCCcEEEeeCc
Q 004747          111 LVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFN  190 (732)
Q Consensus       111 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~~L~~L~Ls~n  190 (732)
                      |+|++|.+.|.+|..++.+++|++|||++|+++|.+|..++++++|++|+|++| .+.|.+|..++....++..+++.+|
T Consensus       447 L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N-~l~g~iP~~l~~~~~~~~~l~~~~N  525 (623)
T PLN03150        447 INLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGN-SLSGRVPAALGGRLLHRASFNFTDN  525 (623)
T ss_pred             EECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCC-cccccCChHHhhccccCceEEecCC
Confidence            999999999999999999999999999999999999999999999999999999 6788888887765356677888777


Q ss_pred             ccc
Q 004747          191 SFC  193 (732)
Q Consensus       191 ~l~  193 (732)
                      ...
T Consensus       526 ~~l  528 (623)
T PLN03150        526 AGL  528 (623)
T ss_pred             ccc
Confidence            643

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.63  E-value=1.2e-17  Score=146.53  Aligned_cols=165  Identities=25%  Similarity=0.366  Sum_probs=142.2

Q ss_pred             CCCcEEEEEcCCCCCcccccccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEECCCCCCCCCCCccccCCCCCCEE
Q 004747           80 QTGHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLREL  159 (732)
Q Consensus        80 ~~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L  159 (732)
                      ...++++|.|+.|.++ .+|+.+..+.+|+.|++++|++. .+|..++.+++|+.|+++-|++. ..|..|+.++.|+.|
T Consensus        31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levl  107 (264)
T KOG0617|consen   31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVL  107 (264)
T ss_pred             chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhh
Confidence            3458899999999987 67889999999999999999998 78889999999999999999998 889999999999999


Q ss_pred             eCCCCCCCCCcCCchhhhcccCCcEEEeeCcccccccCcccCCCCCCCEEEeecccCCCccccccccccEEECCCCcCcc
Q 004747          160 ILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSG  239 (732)
Q Consensus       160 ~Ls~n~~~~~~~p~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~L~~L~L~~n~l~~  239 (732)
                      ||.+|..-...+|..+..+ +.|+.|.|+.|.+. .+|..++++++|+.|.+.+|.+-                      
T Consensus       108 dltynnl~e~~lpgnff~m-~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll----------------------  163 (264)
T KOG0617|consen  108 DLTYNNLNENSLPGNFFYM-TTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL----------------------  163 (264)
T ss_pred             hccccccccccCCcchhHH-HHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh----------------------
Confidence            9999977778888888888 88999999999987 78888899988888888888764                      


Q ss_pred             ccCchhhcccccCeeeCCCCccccccchhhhcc
Q 004747          240 TLPCFAASAMSLTVLKLDNNSVVGGIPTCIASL  272 (732)
Q Consensus       240 ~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l  272 (732)
                      .+|..++.++.|++|.+.+|+++ .+|..++++
T Consensus       164 ~lpkeig~lt~lrelhiqgnrl~-vlppel~~l  195 (264)
T KOG0617|consen  164 SLPKEIGDLTRLRELHIQGNRLT-VLPPELANL  195 (264)
T ss_pred             hCcHHHHHHHHHHHHhcccceee-ecChhhhhh
Confidence            56777777788888888888777 455555544

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.17  E-value=3.3e-11  Score=130.54  Aligned_cols=178  Identities=34%  Similarity=0.472  Sum_probs=90.6

Q ss_pred             CCCcEEEcccCceeeeccccCCCCC-CCCEEEccCCcccccchhhhhcCCCCCEEEcccCCCccccchhhhcCCCCCEEE
Q 004747          420 DSLKILDISNNQISGEIPLTLAGLK-SLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMD  498 (732)
Q Consensus       420 ~~L~~L~L~~n~l~~~~p~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~  498 (732)
                      +.++.|++.+|.++ .++......+ +|+.|++++|++. .+|..+..+++|+.|++++|++. .+|......++|+.|+
T Consensus       116 ~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~  192 (394)
T COG4886         116 TNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLD  192 (394)
T ss_pred             cceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhhee
Confidence            44555555555555 3333333332 5555555555554 23334455555555555555555 4444444555555555


Q ss_pred             ccCCcCcccCCcccccCccccCcCCCCCCCCCCcccCCCceeEEeEEEeecCCchhhhhhcccceEEEccCCcccccCCc
Q 004747          499 FSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGTIPK  578 (732)
Q Consensus       499 ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~  578 (732)
                      +++|++.. +|...                                            .....|+++++++|.+. .++.
T Consensus       193 ls~N~i~~-l~~~~--------------------------------------------~~~~~L~~l~~~~N~~~-~~~~  226 (394)
T COG4886         193 LSGNKISD-LPPEI--------------------------------------------ELLSALEELDLSNNSII-ELLS  226 (394)
T ss_pred             ccCCcccc-Cchhh--------------------------------------------hhhhhhhhhhhcCCcce-ecch
Confidence            55555541 22210                                            00233555556665433 4555


Q ss_pred             ccccccCCceeecccccceecCCcccCccCCcEEeCCCCcCcccCCcCCCCCCCCCEEEcccCcceeeCC
Q 004747          579 GLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVP  648 (732)
Q Consensus       579 ~l~~l~~L~~L~Ls~N~l~~~ip~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip  648 (732)
                      .+.++..+..|.+++|++...+-.++.++++++|++++|.++. ++. +..+.+++.|++++|.++...|
T Consensus       227 ~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~-i~~-~~~~~~l~~L~~s~n~~~~~~~  294 (394)
T COG4886         227 SLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISS-ISS-LGSLTNLRELDLSGNSLSNALP  294 (394)
T ss_pred             hhhhcccccccccCCceeeeccchhccccccceeccccccccc-ccc-ccccCccCEEeccCccccccch
Confidence            5556666666666666655322225556666666666666663 222 5556666666666666655544

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.16  E-value=2.6e-12  Score=133.55  Aligned_cols=195  Identities=32%  Similarity=0.430  Sum_probs=157.3

Q ss_pred             cCCCCEEEeccCCCCCcCccccccCcCCcEEEccCCCCCCCCchhhhhcCCCCCccEEeCCCCcccCCCcccccCCCCCC
Q 004747          272 LQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQ  351 (732)
Q Consensus       272 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~  351 (732)
                      +.--...|++.|++. .+|..+..+..|+.+.|..|.+. .+|..+..+.   .|.++|++.|+++ ..|..++.++ |+
T Consensus        74 ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~---~lt~l~ls~NqlS-~lp~~lC~lp-Lk  146 (722)
T KOG0532|consen   74 LTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLE---ALTFLDLSSNQLS-HLPDGLCDLP-LK  146 (722)
T ss_pred             ccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhh---HHHHhhhccchhh-cCChhhhcCc-ce
Confidence            334456788888887 77888888888999999999887 7888888877   7899999999998 7888888776 89


Q ss_pred             EEeccCccCCCccccccCCCCCCCEEEccCCcCccccCccccCCcCcceeecccccccccCcccccCCCCCcEEEcccCc
Q 004747          352 ALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQ  431 (732)
Q Consensus       352 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~  431 (732)
                      .|-+++|+++ .+|..++....|..||.+.|.+. .+|..++++.+|+.|.+..|++... |..+..+ .|..||++.|+
T Consensus       147 vli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~l-p~El~~L-pLi~lDfScNk  222 (722)
T KOG0532|consen  147 VLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLEDL-PEELCSL-PLIRLDFSCNK  222 (722)
T ss_pred             eEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhhC-CHHHhCC-ceeeeecccCc
Confidence            9999999987 78888888889999999999987 7788888889999999999988754 4445544 58899999999


Q ss_pred             eeeeccccCCCCCCCCEEEccCCcccccchhhhh---cCCCCCEEEcccCC
Q 004747          432 ISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAIT---KWTNLKYFSIARNK  479 (732)
Q Consensus       432 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~---~l~~L~~L~L~~N~  479 (732)
                      ++ .+|..|.+|+.|++|-|.+|.+. ..|..+.   ...=.++|+..-++
T Consensus       223 is-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q  271 (722)
T KOG0532|consen  223 IS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ  271 (722)
T ss_pred             ee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence            98 78888999999999999999987 4555543   33445677777764

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.15  E-value=2.5e-12  Score=133.63  Aligned_cols=194  Identities=25%  Similarity=0.401  Sum_probs=155.5

Q ss_pred             cccCeeeCCCCccccccchhhhccCCCCEEEeccCCCCCcCccccccCcCCcEEEccCCCCCCCCchhhhhcCCCCCccE
Q 004747          249 MSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVL  328 (732)
Q Consensus       249 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~L~~  328 (732)
                      ..-...|++.|++. .+|..+..+..|+.+.+..|.+. .+|..+.++..|.++||+.|+++ ..|..+..++    |+.
T Consensus        75 tdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp----Lkv  147 (722)
T KOG0532|consen   75 TDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP----LKV  147 (722)
T ss_pred             cchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc----cee
Confidence            34456677888776 57777778888888888888876 67778888888888888888887 7787787776    899


Q ss_pred             EeCCCCcccCCCcccccCCCCCCEEeccCccCCCccccccCCCCCCCEEEccCCcCccccCccccCCcCcceeecccccc
Q 004747          329 LDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNL  408 (732)
Q Consensus       329 L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l  408 (732)
                      |-+++|+++ .+|..++....|..|+.+.|.+. .+|..++.+.+|+.|.+..|++. .+|..+. .-.|..|+++.|++
T Consensus       148 li~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~-~LpLi~lDfScNki  223 (722)
T KOG0532|consen  148 LIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELC-SLPLIRLDFSCNKI  223 (722)
T ss_pred             EEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHh-CCceeeeecccCce
Confidence            999999998 78888888889999999999987 67778899999999999999887 6777777 55788999999998


Q ss_pred             cccCcccccCCCCCcEEEcccCceeeeccccCCCC---CCCCEEEccCCc
Q 004747          409 SGEIQPELDALDSLKILDISNNQISGEIPLTLAGL---KSLEIVDFSSNN  455 (732)
Q Consensus       409 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l---~~L~~L~Ls~N~  455 (732)
                      + .+|..|.+|+.|++|.|.+|.+. ..|..+...   .=.++|+..-++
T Consensus       224 s-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q  271 (722)
T KOG0532|consen  224 S-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ  271 (722)
T ss_pred             e-ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence            7 67888999999999999999998 455444322   224567766664

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.13  E-value=1.7e-10  Score=124.91  Aligned_cols=139  Identities=34%  Similarity=0.507  Sum_probs=74.8

Q ss_pred             chhhcccccCeeeCCCCccccccchhhhccCCCCEEEeccCCCCCcCccccccCcCCcEEEccCCCCCCCCchhhhhcCC
Q 004747          243 CFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTE  322 (732)
Q Consensus       243 ~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~  322 (732)
                      ..+..+++|+.|++++|++. .+|...+..+.|+.|++++|++. .+|........|+++.+++|... ..+..+..+. 
T Consensus       157 ~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~-  232 (394)
T COG4886         157 SPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLK-  232 (394)
T ss_pred             hhhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcc-
Confidence            34455555666666666555 23333335555666666666555 34443344444555566555322 2233333333 


Q ss_pred             CCCccEEeCCCCcccCCCcccccCCCCCCEEeccCccCCCccccccCCCCCCCEEEccCCcCccccCc
Q 004747          323 KAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPL  390 (732)
Q Consensus       323 ~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~  390 (732)
                        ++..+.+.+|++. .++..++.+++++.|++++|.++. ++. ++.+.+++.|++++|.+....|.
T Consensus       233 --~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~-i~~-~~~~~~l~~L~~s~n~~~~~~~~  295 (394)
T COG4886         233 --NLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISS-ISS-LGSLTNLRELDLSGNSLSNALPL  295 (394)
T ss_pred             --cccccccCCceee-eccchhccccccceeccccccccc-ccc-ccccCccCEEeccCccccccchh
Confidence              4555556666655 235555666666677777666663 333 66666667777766666644443

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.10  E-value=1.4e-11  Score=118.28  Aligned_cols=206  Identities=23%  Similarity=0.239  Sum_probs=136.9

Q ss_pred             CccccCCcCcceeecccccccccCcccccCCCCCcEEEcccCceeeeccccCCCCCCCCEEEccCC---cccccchhhhh
Q 004747          389 PLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSN---NLSGSLNDAIT  465 (732)
Q Consensus       389 p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N---~l~~~~~~~~~  465 (732)
                      |-.+....+|.++.++.+.-..... ....-+.|+++.+.+..+.. .|. +--.+.+  -|.+.-   -..|..-..+.
T Consensus       207 ~f~l~~f~~l~~~~~s~~~~~~i~~-~~~~kptl~t~~v~~s~~~~-~~~-l~pe~~~--~D~~~~E~~t~~G~~~~~~d  281 (490)
T KOG1259|consen  207 SFNLNAFRNLKTLKFSALSTENIVD-IELLKPTLQTICVHNTTIQD-VPS-LLPETIL--ADPSGSEPSTSNGSALVSAD  281 (490)
T ss_pred             ccchHHhhhhheeeeeccchhheec-eeecCchhheeeeecccccc-ccc-ccchhhh--cCccCCCCCccCCceEEecc
Confidence            3334445566667666664332211 11223566777666655442 111 1111111  122111   12233333344


Q ss_pred             cCCCCCEEEcccCCCccccchhhhcCCCCCEEEccCCcCcccCCcccccCccccCcCCCCCCCCCCcccCCCceeEEeEE
Q 004747          466 KWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISV  545 (732)
Q Consensus       466 ~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  545 (732)
                      .+..|+.+||++|.|+ .+.++..-.+.++.|++|+|.+...-.                                    
T Consensus       282 TWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v~n------------------------------------  324 (490)
T KOG1259|consen  282 TWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTVQN------------------------------------  324 (490)
T ss_pred             hHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeeehh------------------------------------
Confidence            5678999999999988 677778888999999999998852110                                    


Q ss_pred             EeecCCchhhhhhcccceEEEccCCcccccCCcccccccCCceeecccccceecCCcccCccCCcEEeCCCCcCcccC-C
Q 004747          546 TAIDTNELSFNYQLFSAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQI-P  624 (732)
Q Consensus       546 ~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~l~~l~~L~~LdLs~N~l~~~i-p  624 (732)
                                ...+.+|+.||||+|.++ .+-.+-..+-+.+.|+|++|.+. ...+++++-+|..||+++|+|...- -
T Consensus       325 ----------La~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE-~LSGL~KLYSLvnLDl~~N~Ie~ldeV  392 (490)
T KOG1259|consen  325 ----------LAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIE-TLSGLRKLYSLVNLDLSSNQIEELDEV  392 (490)
T ss_pred             ----------hhhcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHh-hhhhhHhhhhheeccccccchhhHHHh
Confidence                      112778899999999998 56666667888999999999986 5666888999999999999997532 3


Q ss_pred             cCCCCCCCCCEEEcccCcceeeCC
Q 004747          625 GNISSLQELTLLNLSYNSFSGFVP  648 (732)
Q Consensus       625 ~~l~~l~~L~~L~ls~N~l~g~ip  648 (732)
                      ..+++++.|+.+.+.+|++.+.+.
T Consensus       393 ~~IG~LPCLE~l~L~~NPl~~~vd  416 (490)
T KOG1259|consen  393 NHIGNLPCLETLRLTGNPLAGSVD  416 (490)
T ss_pred             cccccccHHHHHhhcCCCccccch
Confidence            568899999999999999998753

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.05  E-value=3.8e-11  Score=121.36  Aligned_cols=185  Identities=24%  Similarity=0.294  Sum_probs=118.7

Q ss_pred             ccCCCCCcEEEcccCceeeecc--ccCCCCCCCCEEEccCCcccccchhh-hhcCCCCCEEEcccCCCcc-ccchhhhcC
Q 004747          416 LDALDSLKILDISNNQISGEIP--LTLAGLKSLEIVDFSSNNLSGSLNDA-ITKWTNLKYFSIARNKLSG-NLPNWLFSF  491 (732)
Q Consensus       416 ~~~l~~L~~L~L~~n~l~~~~p--~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~L~~N~l~~-~~p~~~~~~  491 (732)
                      ...|++++.|||+.|-+..-.+  .....+++|+.|+++.|++....... -..++.|+.|.|++|.++- .+-.....+
T Consensus       142 ~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~f  221 (505)
T KOG3207|consen  142 SKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTF  221 (505)
T ss_pred             hhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhC
Confidence            4556777777777776653222  23456777777777777776322211 1246778888888888762 233445667


Q ss_pred             CCCCEEEccCCcCcccCCcccccCccccCcCCCCCCCCCCcccCCCceeEEeEEEeecCCchhhhhhcccceEEEccCCc
Q 004747          492 QAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVGMDLSDNL  571 (732)
Q Consensus       492 ~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~  571 (732)
                      ++|+.|++.+|...+.  . .+.                                         ...+..|+.|||++|+
T Consensus       222 Psl~~L~L~~N~~~~~--~-~~~-----------------------------------------~~i~~~L~~LdLs~N~  257 (505)
T KOG3207|consen  222 PSLEVLYLEANEIILI--K-ATS-----------------------------------------TKILQTLQELDLSNNN  257 (505)
T ss_pred             CcHHHhhhhcccccce--e-cch-----------------------------------------hhhhhHHhhccccCCc
Confidence            8888888888852110  0 000                                         0125677888998888


Q ss_pred             ccccCC--cccccccCCceeecccccceec-CCcc------cCccCCcEEeCCCCcCcccCC--cCCCCCCCCCEEEccc
Q 004747          572 LHGTIP--KGLFQLQGLEYLNLSFNFLDGQ-VPGL------YRLRSLRALDLSHNSLTGQIP--GNISSLQELTLLNLSY  640 (732)
Q Consensus       572 l~g~ip--~~l~~l~~L~~L~Ls~N~l~~~-ip~l------~~l~~L~~LdLs~N~l~~~ip--~~l~~l~~L~~L~ls~  640 (732)
                      +. ..+  ...+.++.|+.|+++.+.+... .|+.      ..+++|++|++++|++. ..+  ..+..+.+|+.|.+-.
T Consensus       258 li-~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~-~w~sl~~l~~l~nlk~l~~~~  335 (505)
T KOG3207|consen  258 LI-DFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR-DWRSLNHLRTLENLKHLRITL  335 (505)
T ss_pred             cc-ccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccc-cccccchhhccchhhhhhccc
Confidence            86 344  4466788888899988888742 2223      45788999999999985 222  3445567778888888


Q ss_pred             Ccceee
Q 004747          641 NSFSGF  646 (732)
Q Consensus       641 N~l~g~  646 (732)
                      |.|+..
T Consensus       336 n~ln~e  341 (505)
T KOG3207|consen  336 NYLNKE  341 (505)
T ss_pred             cccccc
Confidence            888643

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.04  E-value=4.4e-11  Score=120.89  Aligned_cols=215  Identities=25%  Similarity=0.237  Sum_probs=96.5

Q ss_pred             ccCCCCCCEEECCCCCCCCCCC-ccccCCCCCCEEeCCCCCCCCCcCC--chhhhcccCCcEEEeeCcccccccCcc-cC
Q 004747          126 FGGLSGLKTLDLSYNKFVGVVP-DAIMKLRNLRELILKGNPELGGVFP--GWVGNFSMNLEKLDFSFNSFCGEIPES-LY  201 (732)
Q Consensus       126 ~~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~Ls~n~~~~~~~p--~~~~~l~~~L~~L~Ls~n~l~~~~p~~-l~  201 (732)
                      -+++++|+.+.|.++.+..... .....|++++.|||+.| ++....|  .....+ ++|+.|+++.|.+....... -.
T Consensus       117 Qsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~N-L~~nw~~v~~i~eqL-p~Le~LNls~Nrl~~~~~s~~~~  194 (505)
T KOG3207|consen  117 QSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRN-LFHNWFPVLKIAEQL-PSLENLNLSSNRLSNFISSNTTL  194 (505)
T ss_pred             hhhHHhhhheeecCccccccchhhhhhhCCcceeecchhh-hHHhHHHHHHHHHhc-ccchhcccccccccCCccccchh
Confidence            3456777777777766652211 24456777777777777 4332211  112233 56666666666654222111 11


Q ss_pred             CCCCCCEEEeecccCCCccccccccccEEECCCCcCccccCchhhcccccCeeeCCCCccccccchhhhccCCCCEEEec
Q 004747          202 YLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLS  281 (732)
Q Consensus       202 ~l~~L~~L~Ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~  281 (732)
                      .+++|+.|.|+.|.++...                    +-.....+++|+.|++..|...........-+..|++|||+
T Consensus       195 ~l~~lK~L~l~~CGls~k~--------------------V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs  254 (505)
T KOG3207|consen  195 LLSHLKQLVLNSCGLSWKD--------------------VQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLS  254 (505)
T ss_pred             hhhhhheEEeccCCCCHHH--------------------HHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhcccc
Confidence            3455555555555554211                    11112233444444444443211112222233444444444


Q ss_pred             cCCCCCc-CccccccCcCCcEEEccCCCCCCC-Cch--hhhhcCCCCCccEEeCCCCcccCC-CcccccCCCCCCEEecc
Q 004747          282 HNHLNYE-ISPRLVFFEKLLLLDLSFNDLSGP-LPS--KIAQTTEKAGLVLLDLSHNRFSGE-IPLKITELKSLQALFLS  356 (732)
Q Consensus       282 ~n~l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~-~p~--~~~~l~~~~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~Ls  356 (732)
                      +|++-.. .-...+.++.|+.|+++.+.+... .|+  ........++|++|+++.|++... .-..+..+++|+.|.+.
T Consensus       255 ~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~  334 (505)
T KOG3207|consen  255 NNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRIT  334 (505)
T ss_pred             CCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcc
Confidence            4443211 112234444444444444444321 011  111122233566666666666411 11223445666666666


Q ss_pred             CccCCC
Q 004747          357 NNLLIG  362 (732)
Q Consensus       357 ~n~l~~  362 (732)
                      .|.++.
T Consensus       335 ~n~ln~  340 (505)
T KOG3207|consen  335 LNYLNK  340 (505)
T ss_pred             cccccc
Confidence            666653

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.03  E-value=5.7e-11  Score=117.01  Aligned_cols=192  Identities=18%  Similarity=0.198  Sum_probs=101.7

Q ss_pred             cccCcCCcEEEccCCCCCCCCchhhhhc-CCCCCccEEeCCCCcccCCC-------------cccccCCCCCCEEeccCc
Q 004747          293 LVFFEKLLLLDLSFNDLSGPLPSKIAQT-TEKAGLVLLDLSHNRFSGEI-------------PLKITELKSLQALFLSNN  358 (732)
Q Consensus       293 l~~l~~L~~L~Ls~n~l~~~~p~~~~~l-~~~~~L~~L~Ls~n~l~~~~-------------p~~l~~l~~L~~L~Ls~n  358 (732)
                      +..+++|+++|||+|.+.-..++.+..+ .+...|+.|.|.+|.+.-.-             ......-+.|+++...+|
T Consensus        88 L~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN  167 (382)
T KOG1909|consen   88 LLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN  167 (382)
T ss_pred             HhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc
Confidence            3445667777777776654444443331 22335666666666654110             011222345555555555


Q ss_pred             cCCCc----cccccCCCCCCCEEEccCCcCccccCccccCCcCcceeecccccccccCcccccCCCCCcEEEcccCceee
Q 004747          359 LLIGE----IPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISG  434 (732)
Q Consensus       359 ~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  434 (732)
                      ++...    +...|...+.|+.+.++.|.+...-..                    .+...+..+++|++|||.+|.++.
T Consensus       168 rlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~--------------------al~eal~~~~~LevLdl~DNtft~  227 (382)
T KOG1909|consen  168 RLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVT--------------------ALAEALEHCPHLEVLDLRDNTFTL  227 (382)
T ss_pred             ccccccHHHHHHHHHhccccceEEEecccccCchhH--------------------HHHHHHHhCCcceeeecccchhhh
Confidence            54321    122333444555555555544311000                    122345567777777777776653


Q ss_pred             e----ccccCCCCCCCCEEEccCCcccccchhhh-----hcCCCCCEEEcccCCCccc----cchhhhcCCCCCEEEccC
Q 004747          435 E----IPLTLAGLKSLEIVDFSSNNLSGSLNDAI-----TKWTNLKYFSIARNKLSGN----LPNWLFSFQAIQMMDFST  501 (732)
Q Consensus       435 ~----~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~-----~~l~~L~~L~L~~N~l~~~----~p~~~~~~~~L~~L~ls~  501 (732)
                      .    +...+..+++|++|++++|.+.......+     ...++|++|.+.+|.++..    +-..+...+.|..|++++
T Consensus       228 egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLng  307 (382)
T KOG1909|consen  228 EGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNG  307 (382)
T ss_pred             HHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCc
Confidence            2    22345566677777777777764333322     2356777777777777532    223344567777788888


Q ss_pred             CcC
Q 004747          502 NKF  504 (732)
Q Consensus       502 N~l  504 (732)
                      |.+
T Consensus       308 N~l  310 (382)
T KOG1909|consen  308 NRL  310 (382)
T ss_pred             ccc
Confidence            877

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.00  E-value=1.3e-10  Score=111.68  Aligned_cols=104  Identities=32%  Similarity=0.315  Sum_probs=57.8

Q ss_pred             CCCCEEEeccCCCCCcCccccccCcCCcEEEccCCCCCCCCchhhhhcCCCCCccEEeCCCCcccCCCcccccCCCCCCE
Q 004747          273 QALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQA  352 (732)
Q Consensus       273 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~  352 (732)
                      +.|+++||++|.++ .+..+..-.++++.|++|+|.+.     .++++..+++|+.||+|+|.++ .+..|-.++.+++.
T Consensus       284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-----~v~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKt  356 (490)
T KOG1259|consen  284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-----TVQNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKT  356 (490)
T ss_pred             hhhhhccccccchh-hhhhhhhhccceeEEecccccee-----eehhhhhcccceEeecccchhH-hhhhhHhhhcCEee
Confidence            44555555555554 34444555556666666666555     1222333336666666666665 34444455566666


Q ss_pred             EeccCccCCCccccccCCCCCCCEEEccCCcCc
Q 004747          353 LFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLS  385 (732)
Q Consensus       353 L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~  385 (732)
                      |.|+.|.+...  ..++++-+|..||+++|++.
T Consensus       357 L~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie  387 (490)
T KOG1259|consen  357 LKLAQNKIETL--SGLRKLYSLVNLDLSSNQIE  387 (490)
T ss_pred             eehhhhhHhhh--hhhHhhhhheeccccccchh
Confidence            66766666421  34556666667777776664

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.98  E-value=8e-11  Score=115.99  Aligned_cols=61  Identities=28%  Similarity=0.371  Sum_probs=26.9

Q ss_pred             CccEEeCCCCcccCC----CcccccCCCCCCEEeccCccCCCcccccc-----CCCCCCCEEEccCCcCc
Q 004747          325 GLVLLDLSHNRFSGE----IPLKITELKSLQALFLSNNLLIGEIPARI-----GNLTYLQVIDLSHNMLS  385 (732)
Q Consensus       325 ~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l-----~~l~~L~~L~Ls~n~l~  385 (732)
                      +|+.|||.+|.++..    +...+..+++|+.|++++|.+...-...+     ...++|+.+.+.+|.++
T Consensus       214 ~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt  283 (382)
T KOG1909|consen  214 HLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEIT  283 (382)
T ss_pred             cceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhH
Confidence            444444444444311    22233444555555555555543222111     12445555555555554

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.92  E-value=1.5e-10  Score=125.62  Aligned_cols=243  Identities=29%  Similarity=0.329  Sum_probs=145.2

Q ss_pred             CccEEeCCCCcccCCCcccccCCCCCCEEeccCccCCCccccccCCCCCCCEEEccCCcCccccCccccCCcCcceeecc
Q 004747          325 GLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVN  404 (732)
Q Consensus       325 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~  404 (732)
                      .++.+.+..|.+.. +-..+..+.+|+.|++.+|.+... ...+..+++|++|++++|.|+                   
T Consensus        73 ~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~-------------------  131 (414)
T KOG0531|consen   73 SLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKIT-------------------  131 (414)
T ss_pred             hHHhhccchhhhhh-hhcccccccceeeeeccccchhhc-ccchhhhhcchheeccccccc-------------------
Confidence            45555555555542 222344455555555555555522 111444555555555555554                   


Q ss_pred             cccccccCcccccCCCCCcEEEcccCceeeeccccCCCCCCCCEEEccCCcccccch-hhhhcCCCCCEEEcccCCCccc
Q 004747          405 NNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLN-DAITKWTNLKYFSIARNKLSGN  483 (732)
Q Consensus       405 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~  483 (732)
                           ...+  +..++.|+.|++++|.++..  ..+..++.|+.+++++|.+...-+ . ...+.+++.+++.+|.+.. 
T Consensus       132 -----~i~~--l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~-  200 (414)
T KOG0531|consen  132 -----KLEG--LSTLTLLKELNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE-  200 (414)
T ss_pred             -----cccc--hhhccchhhheeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhc-
Confidence                 2211  34455577777777777632  234456777777777777764433 1 4566777777777777652 


Q ss_pred             cchhhhcCCCCCEEEccCCcCcccCCcccccCccccCcCCCCCCCCCCcccCCCceeEEeEEEeecCCchhhhhhcc--c
Q 004747          484 LPNWLFSFQAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLF--S  561 (732)
Q Consensus       484 ~p~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~  561 (732)
                       ...+..+..+..+++..|.++..-+..                                              .+.  +
T Consensus       201 -i~~~~~~~~l~~~~l~~n~i~~~~~l~----------------------------------------------~~~~~~  233 (414)
T KOG0531|consen  201 -IEGLDLLKKLVLLSLLDNKISKLEGLN----------------------------------------------ELVMLH  233 (414)
T ss_pred             -ccchHHHHHHHHhhcccccceeccCcc----------------------------------------------cchhHH
Confidence             222333344444466666654211110                                              011  3


Q ss_pred             ceEEEccCCcccccCCcccccccCCceeecccccceecCCcccCccCCcEEeCCCCcCccc---CCcC-CCCCCCCCEEE
Q 004747          562 AVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQ---IPGN-ISSLQELTLLN  637 (732)
Q Consensus       562 L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~l~~l~~L~~LdLs~N~l~~~---ip~~-l~~l~~L~~L~  637 (732)
                      |+.+++++|++. .++..+..+..+..|++++|++. ....+.....+..+..+.|.+...   .... ....+.+....
T Consensus       234 L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (414)
T KOG0531|consen  234 LRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRIS-NLEGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLT  311 (414)
T ss_pred             HHHHhcccCccc-cccccccccccccccchhhcccc-ccccccccchHHHhccCcchhcchhhhhccccccccccccccc
Confidence            678889999987 56567778889999999999887 344466677888888888887632   2222 45677888999


Q ss_pred             cccCcceeeCC
Q 004747          638 LSYNSFSGFVP  648 (732)
Q Consensus       638 ls~N~l~g~ip  648 (732)
                      +.+|+.....+
T Consensus       312 ~~~~~~~~~~~  322 (414)
T KOG0531|consen  312 LELNPIRKISS  322 (414)
T ss_pred             cccCccccccc
Confidence            99998877655

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.86  E-value=4.3e-09  Score=121.86  Aligned_cols=105  Identities=30%  Similarity=0.356  Sum_probs=60.1

Q ss_pred             CCCEEECCCCC--CCCcccccccCCCCCCEEECCCCCCCCCCCccccCCCCCCEEeCCCCCCCCCcCCchhhhcccCCcE
Q 004747          107 FLEFLVLSSNA--FTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEK  184 (732)
Q Consensus       107 ~L~~L~Ls~n~--l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~~L~~  184 (732)
                      .|++|-+..|.  +.......|..++.|++||||+|.=-+.+|..++++-+||+|+|++...  ..+|..++++ ..|.+
T Consensus       546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I--~~LP~~l~~L-k~L~~  622 (889)
T KOG4658|consen  546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGI--SHLPSGLGNL-KKLIY  622 (889)
T ss_pred             ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCc--cccchHHHHH-Hhhhe
Confidence            46666555554  3323333455566666666666555556666666666666666666532  2556666666 56666


Q ss_pred             EEeeCcccccccCcccCCCCCCCEEEeecc
Q 004747          185 LDFSFNSFCGEIPESLYYLKSLKHLDLEKN  214 (732)
Q Consensus       185 L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n  214 (732)
                      |++..+.....+|.....+++|++|.+...
T Consensus       623 Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s  652 (889)
T KOG4658|consen  623 LNLEVTGRLESIPGILLELQSLRVLRLPRS  652 (889)
T ss_pred             eccccccccccccchhhhcccccEEEeecc
Confidence            666665544444444555666666666544

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.83  E-value=3.2e-09  Score=80.82  Aligned_cols=60  Identities=42%  Similarity=0.519  Sum_probs=48.2

Q ss_pred             cCCceeecccccceecCCc-ccCccCCcEEeCCCCcCcccCCcCCCCCCCCCEEEcccCcc
Q 004747          584 QGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSF  643 (732)
Q Consensus       584 ~~L~~L~Ls~N~l~~~ip~-l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l  643 (732)
                      ++|++|++++|+++...+. +.++++|++|++++|+++...|..|..+++|++|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            4678888888888755545 77788888888888888877788888888888888888875

...

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.82  E-value=2.5e-09  Score=99.22  Aligned_cols=126  Identities=27%  Similarity=0.371  Sum_probs=39.1

Q ss_pred             cCCCCCCEEeccCccCCCccccccC-CCCCCCEEEccCCcCccccCccccCCcCcceeecccccccccCcccccCCCCCc
Q 004747          345 TELKSLQALFLSNNLLIGEIPARIG-NLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLK  423 (732)
Q Consensus       345 ~~l~~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~  423 (732)
                      .+..++++|+|.+|.++. + +.++ .+.+|+.|++++|.++.. .                         .+..++.|+
T Consensus        16 ~n~~~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~~l-~-------------------------~l~~L~~L~   67 (175)
T PF14580_consen   16 NNPVKLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQITKL-E-------------------------GLPGLPRLK   67 (175)
T ss_dssp             ----------------------S--TT-TT--EEE-TTS--S---T-------------------------T----TT--
T ss_pred             cccccccccccccccccc-c-cchhhhhcCCCEEECCCCCCccc-c-------------------------CccChhhhh
Confidence            334456777777777663 2 2344 356667777777766521 1                         134456666


Q ss_pred             EEEcccCceeeeccccC-CCCCCCCEEEccCCcccccc-hhhhhcCCCCCEEEcccCCCcccc---chhhhcCCCCCEEE
Q 004747          424 ILDISNNQISGEIPLTL-AGLKSLEIVDFSSNNLSGSL-NDAITKWTNLKYFSIARNKLSGNL---PNWLFSFQAIQMMD  498 (732)
Q Consensus       424 ~L~L~~n~l~~~~p~~~-~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~---p~~~~~~~~L~~L~  498 (732)
                      .|++++|.++.. ...+ ..+++|++|++++|+|...- -..+..+++|+.|++.+|+++..-   ...+..+|+|+.||
T Consensus        68 ~L~L~~N~I~~i-~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD  146 (175)
T PF14580_consen   68 TLDLSNNRISSI-SEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD  146 (175)
T ss_dssp             EEE--SS---S--CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred             hcccCCCCCCcc-ccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeC
Confidence            666666666632 2222 24566777777777665321 134556777777777777776331   23456677888776


Q ss_pred             c
Q 004747          499 F  499 (732)
Q Consensus       499 l  499 (732)
                      -
T Consensus       147 ~  147 (175)
T PF14580_consen  147 G  147 (175)
T ss_dssp             T
T ss_pred             C
Confidence            4

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.79  E-value=5.5e-09  Score=96.92  Aligned_cols=123  Identities=30%  Similarity=0.336  Sum_probs=40.8

Q ss_pred             CccEEeCCCCcccCCCccccc-CCCCCCEEeccCccCCCccccccCCCCCCCEEEccCCcCccccCccccCCcCcceeec
Q 004747          325 GLVLLDLSHNRFSGEIPLKIT-ELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIV  403 (732)
Q Consensus       325 ~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l  403 (732)
                      .+++|+|++|.++ .+. .++ .+.+|+.|++++|.++. + +.+..++.|+.|++++|+++. +...+.          
T Consensus        20 ~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~~-l-~~l~~L~~L~~L~L~~N~I~~-i~~~l~----------   84 (175)
T PF14580_consen   20 KLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQITK-L-EGLPGLPRLKTLDLSNNRISS-ISEGLD----------   84 (175)
T ss_dssp             ------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHH----------
T ss_pred             ccccccccccccc-ccc-chhhhhcCCCEEECCCCCCcc-c-cCccChhhhhhcccCCCCCCc-cccchH----------
Confidence            6899999999998 343 455 57899999999999984 3 357889999999999999984 332221          


Q ss_pred             ccccccccCcccccCCCCCcEEEcccCceeeec-cccCCCCCCCCEEEccCCcccccc---hhhhhcCCCCCEEEc
Q 004747          404 NNNNLSGEIQPELDALDSLKILDISNNQISGEI-PLTLAGLKSLEIVDFSSNNLSGSL---NDAITKWTNLKYFSI  475 (732)
Q Consensus       404 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~---~~~~~~l~~L~~L~L  475 (732)
                                   ..+++|+.|++++|++...- -..+..+++|++|++.+|.+....   ...+..+|+|+.||-
T Consensus        85 -------------~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen   85 -------------KNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             -------------HH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred             -------------HhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence                         12344555555555544211 123445566666666666665321   123456777777764

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.71  E-value=1.5e-09  Score=117.75  Aligned_cols=241  Identities=27%  Similarity=0.297  Sum_probs=124.6

Q ss_pred             cccCeeeCCCCccccccchhhhccCCCCEEEeccCCCCCcCccccccCcCCcEEEccCCCCCCCCchhhhhcCCCCCccE
Q 004747          249 MSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVL  328 (732)
Q Consensus       249 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~L~~  328 (732)
                      ..++.+.+..|.+.. +-..+..+++|+.|++.+|++... ...+..+++|++|++++|.|+.     +..+..++.|+.
T Consensus        72 ~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~-----i~~l~~l~~L~~  144 (414)
T KOG0531|consen   72 TSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITK-----LEGLSTLTLLKE  144 (414)
T ss_pred             HhHHhhccchhhhhh-hhcccccccceeeeeccccchhhc-ccchhhhhcchheecccccccc-----ccchhhccchhh
Confidence            344444455554442 122244455566666666655532 1124555666666666666652     222222224666


Q ss_pred             EeCCCCcccCCCcccccCCCCCCEEeccCccCCCccc-cccCCCCCCCEEEccCCcCccccCccccCCcCcceeeccccc
Q 004747          329 LDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIP-ARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNN  407 (732)
Q Consensus       329 L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~  407 (732)
                      |++++|.++. + ..+..++.|+.+++++|.+...-+ . ...+.+++.+++.+|.+...  ..+.....+..+.+..|.
T Consensus       145 L~l~~N~i~~-~-~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~  219 (414)
T KOG0531|consen  145 LNLSGNLISD-I-SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNK  219 (414)
T ss_pred             heeccCcchh-c-cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhccccc
Confidence            6666666652 2 234445666666666666653322 1 35566666666666665421  222333344444555555


Q ss_pred             ccccCcccccCCC--CCcEEEcccCceeeeccccCCCCCCCCEEEccCCcccccchhhhhcCCCCCEEEcccCCCccc--
Q 004747          408 LSGEIQPELDALD--SLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGN--  483 (732)
Q Consensus       408 l~~~~~~~~~~l~--~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~--  483 (732)
                      ++..-+.  ..+.  +|+.+++++|.+. ..+..+..+..+..+++.+|++...-  .+.....+..+....|++...  
T Consensus       220 i~~~~~l--~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  294 (414)
T KOG0531|consen  220 ISKLEGL--NELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNLE--GLERLPKLSELWLNDNKLALSEA  294 (414)
T ss_pred             ceeccCc--ccchhHHHHHHhcccCccc-cccccccccccccccchhhccccccc--cccccchHHHhccCcchhcchhh
Confidence            5432211  1122  3677777777776 33345566677777777777776432  233445566666666665422  


Q ss_pred             -cchh-hhcCCCCCEEEccCCcCcc
Q 004747          484 -LPNW-LFSFQAIQMMDFSTNKFMG  506 (732)
Q Consensus       484 -~p~~-~~~~~~L~~L~ls~N~l~~  506 (732)
                       .... ....+.++.+.+..|....
T Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~  319 (414)
T KOG0531|consen  295 ISQEYITSAAPTLVTLTLELNPIRK  319 (414)
T ss_pred             hhccccccccccccccccccCcccc
Confidence             1111 3445566666666666643

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.66  E-value=2.5e-08  Score=75.91  Aligned_cols=59  Identities=36%  Similarity=0.592  Sum_probs=34.9

Q ss_pred             CCcEEEcccCceeeeccccCCCCCCCCEEEccCCcccccchhhhhcCCCCCEEEcccCC
Q 004747          421 SLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNK  479 (732)
Q Consensus       421 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~  479 (732)
                      +|++|++++|+++...+..|.++++|++|++++|+++...+..|..+++|++|++++|+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            45666666666664444555666666666666666665555555666666666666554

...

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.59  E-value=6.3e-08  Score=112.35  Aligned_cols=103  Identities=25%  Similarity=0.295  Sum_probs=65.3

Q ss_pred             CCCEEEeeccc--CCCcccc---ccccccEEECCCCcCccccCchhhcccccCeeeCCCCccccccchhhhccCCCCEEE
Q 004747          205 SLKHLDLEKNN--LTGNVHD---FYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLN  279 (732)
Q Consensus       205 ~L~~L~Ls~n~--l~~~~~~---~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~  279 (732)
                      +|+.|-+..|.  +......   .++.|++|||++|.=-+.+|..++.+-+|++|++++..+. .+|..++++..|.+|+
T Consensus       546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Ln  624 (889)
T KOG4658|consen  546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLN  624 (889)
T ss_pred             ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheec
Confidence            55555555553  2222221   2334556666655545567777777777888888777776 5777777777788887


Q ss_pred             eccCCCCCcCccccccCcCCcEEEccCCC
Q 004747          280 LSHNHLNYEISPRLVFFEKLLLLDLSFND  308 (732)
Q Consensus       280 L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~  308 (732)
                      +..+.-...+|.....+++|++|.+....
T Consensus       625 l~~~~~l~~~~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  625 LEVTGRLESIPGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             cccccccccccchhhhcccccEEEeeccc
Confidence            77765544555555567777777776554

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=98.49  E-value=1.8e-07  Score=65.00  Aligned_cols=38  Identities=39%  Similarity=0.838  Sum_probs=28.7

Q ss_pred             HHhHHHHHHHHhcCCC-CCCCCCCCC-C--CCCCCccceeec
Q 004747           41 LEDKASLLLFKSLVQD-PTQKLSSWV-G--SNCTNWTGVACN   78 (732)
Q Consensus        41 ~~~~~~l~~~k~~~~~-~~~~l~~w~-~--~~~c~w~gv~c~   78 (732)
                      .+|++||++||+++.. |.+.+.+|. .  .+||.|.||+|+
T Consensus         2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C~W~GV~Cd   43 (43)
T PF08263_consen    2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPCSWSGVTCD   43 (43)
T ss_dssp             HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CCCSTTEEE-
T ss_pred             cHHHHHHHHHHHhcccccCcccccCCCcCCCCCeeeccEEeC
Confidence            4688899999999994 668899993 3  799999999995

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.46  E-value=3.1e-09  Score=102.40  Aligned_cols=66  Identities=24%  Similarity=0.245  Sum_probs=30.0

Q ss_pred             cCCCCCCEEeCCCCCCCCCcCCchhhhcccCCcEEEeeCcc-cccc-cCcccCCCCCCCEEEeecccCCC
Q 004747          151 MKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNS-FCGE-IPESLYYLKSLKHLDLEKNNLTG  218 (732)
Q Consensus       151 ~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~~L~~L~Ls~n~-l~~~-~p~~l~~l~~L~~L~Ls~n~l~~  218 (732)
                      ..|.+|+.|.|.++ .+...+-..+++- .+|+.|+++.+. ++.. .---+.+++.|..|+|+.+.+..
T Consensus       207 s~C~kLk~lSlEg~-~LdD~I~~~iAkN-~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~  274 (419)
T KOG2120|consen  207 SQCSKLKNLSLEGL-RLDDPIVNTIAKN-SNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFT  274 (419)
T ss_pred             HHHHhhhhcccccc-ccCcHHHHHHhcc-ccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccc
Confidence            34444444444444 3333333333333 445555554442 1110 00124566667777777666543

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.44  E-value=5.8e-09  Score=111.80  Aligned_cols=179  Identities=28%  Similarity=0.324  Sum_probs=103.0

Q ss_pred             cccccCCCCCcEEEcccCceeeeccccCCCC-CCCCEEEccCCcccccchhhh----h------cCCCCCEEEcccCCCc
Q 004747          413 QPELDALDSLKILDISNNQISGEIPLTLAGL-KSLEIVDFSSNNLSGSLNDAI----T------KWTNLKYFSIARNKLS  481 (732)
Q Consensus       413 ~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l-~~L~~L~Ls~N~l~~~~~~~~----~------~l~~L~~L~L~~N~l~  481 (732)
                      |-.+..+.+|++|.+.++.+...  ..+..+ ..|+.|.- .|.+. .+...|    +      .+..|...+.+.|.+.
T Consensus       102 pi~ifpF~sLr~LElrg~~L~~~--~GL~~lr~qLe~LIC-~~Sl~-Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~  177 (1096)
T KOG1859|consen  102 PISIFPFRSLRVLELRGCDLSTA--KGLQELRHQLEKLIC-HNSLD-ALRHVFASCGGDISNSPVWNKLATASFSYNRLV  177 (1096)
T ss_pred             CceeccccceeeEEecCcchhhh--hhhHHHHHhhhhhhh-hccHH-HHHHHHHHhccccccchhhhhHhhhhcchhhHH
Confidence            45567788999999999887631  111111 22333322 12221 010111    0      1345666777777776


Q ss_pred             cccchhhhcCCCCCEEEccCCcCcccCCcccccCccccCcCCCCCCCCCCcccCCCceeEEeEEEeecCCchhhhhhccc
Q 004747          482 GNLPNWLFSFQAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFS  561 (732)
Q Consensus       482 ~~~p~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  561 (732)
                       .+...+.-++.++.|||++|+++..                                              ..+..++.
T Consensus       178 -~mD~SLqll~ale~LnLshNk~~~v----------------------------------------------~~Lr~l~~  210 (1096)
T KOG1859|consen  178 -LMDESLQLLPALESLNLSHNKFTKV----------------------------------------------DNLRRLPK  210 (1096)
T ss_pred             -hHHHHHHHHHHhhhhccchhhhhhh----------------------------------------------HHHHhccc
Confidence             4556666677777777777776521                                              11122667


Q ss_pred             ceEEEccCCcccccCCcccccccCCceeecccccceecCCcccCccCCcEEeCCCCcCcccCC-cCCCCCCCCCEEEccc
Q 004747          562 AVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIP-GNISSLQELTLLNLSY  640 (732)
Q Consensus       562 L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~l~~l~~L~~LdLs~N~l~~~ip-~~l~~l~~L~~L~ls~  640 (732)
                      |+.|||++|.+. .+|.--..--.|+.|++++|.++ ..-++.++++|+.||+|+|-|.+.-- .-+..+.+|..|+|.+
T Consensus       211 LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lrnN~l~-tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeG  288 (1096)
T KOG1859|consen  211 LKHLDLSYNCLR-HVPQLSMVGCKLQLLNLRNNALT-TLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEG  288 (1096)
T ss_pred             ccccccccchhc-cccccchhhhhheeeeecccHHH-hhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcC
Confidence            777777777776 55532111123777777777776 45557777777777777777765321 1234456677777777


Q ss_pred             Ccce
Q 004747          641 NSFS  644 (732)
Q Consensus       641 N~l~  644 (732)
                      |++.
T Consensus       289 NPl~  292 (1096)
T KOG1859|consen  289 NPLC  292 (1096)
T ss_pred             Cccc
Confidence            7774

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.29  E-value=1.1e-08  Score=98.61  Aligned_cols=204  Identities=20%  Similarity=0.152  Sum_probs=136.6

Q ss_pred             cEEEEEcCCCCCccc-ccccccCC-CCCCEEECCCCCCCCc-ccccccCCCCCCEEECCCCCCCCCCCccccCCCCCCEE
Q 004747           83 HVVSINLTDTSLSGQ-VHPRLCKL-SFLEFLVLSSNAFTGR-ISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLREL  159 (732)
Q Consensus        83 ~v~~L~L~~~~l~~~-~~~~l~~l-~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L  159 (732)
                      .|..+.+........ +.+.+.-+ +.|++||||+..++.. +...++.+.+|+.|.|.++++.+.+...+++-.+|+.|
T Consensus       160 gV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~l  239 (419)
T KOG2120|consen  160 GVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRL  239 (419)
T ss_pred             CeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceee
Confidence            577777764433322 22222222 4699999999888744 34456789999999999999999988999999999999


Q ss_pred             eCCCCCCCCCcCCch-hhhcccCCcEEEeeCcccccccCccc-C-CCCCCCEEEeecccCCCccccccccccEEECCCCc
Q 004747          160 ILKGNPELGGVFPGW-VGNFSMNLEKLDFSFNSFCGEIPESL-Y-YLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNR  236 (732)
Q Consensus       160 ~Ls~n~~~~~~~p~~-~~~l~~~L~~L~Ls~n~l~~~~p~~l-~-~l~~L~~L~Ls~n~l~~~~~~~~~~L~~L~L~~n~  236 (732)
                      +|+.+..++..--.. +.++ +.|..|+++.|.+........ . --++|+.|+|++..-.                  -
T Consensus       240 nlsm~sG~t~n~~~ll~~sc-s~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrn------------------l  300 (419)
T KOG2120|consen  240 NLSMCSGFTENALQLLLSSC-SRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRN------------------L  300 (419)
T ss_pred             ccccccccchhHHHHHHHhh-hhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhh------------------h
Confidence            999885443322222 3344 889999999998765432221 1 1256777777775321                  0


Q ss_pred             CccccCchhhcccccCeeeCCCCc-cccccchhhhccCCCCEEEeccCCCCCcCcc---ccccCcCCcEEEccCC
Q 004747          237 FSGTLPCFAASAMSLTVLKLDNNS-VVGGIPTCIASLQALTHLNLSHNHLNYEISP---RLVFFEKLLLLDLSFN  307 (732)
Q Consensus       237 l~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~---~l~~l~~L~~L~Ls~n  307 (732)
                      ....+......+++|.+|||++|. ++......|.+++.|++|.++.|..  .+|.   .+...+.|.+||+.++
T Consensus       301 ~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  301 QKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             hhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence            011222334578888999998875 4444445667888999999988853  3444   3556788999988755

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.27  E-value=2.4e-08  Score=107.19  Aligned_cols=127  Identities=26%  Similarity=0.336  Sum_probs=87.7

Q ss_pred             CCCCEEEccCCcccccchhhhhcCCCCCEEEcccCCCccccchhhhcCCCCCEEEccCCcCcccCCcccccCccccCcCC
Q 004747          444 KSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSD  523 (732)
Q Consensus       444 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~  523 (732)
                      ..|...+.+.|.+. .+..++.-++.|+.|+|++|+++..-  .+..++.|+.||+++|.+. .+|.--  .        
T Consensus       164 n~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~--~--------  229 (1096)
T KOG1859|consen  164 NKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLS--M--------  229 (1096)
T ss_pred             hhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccc--h--------
Confidence            35667777778776 55566777778888888888876332  6777888888888888775 233210  0        


Q ss_pred             CCCCCCCCcccCCCceeEEeEEEeecCCchhhhhhcccceEEEccCCcccccCCcccccccCCceeecccccceecCC--
Q 004747          524 IGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVP--  601 (732)
Q Consensus       524 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip--  601 (732)
                                                       ..+. |+.|.+++|.++ . -..+.+|++|+.||+|+|-|.+--.  
T Consensus       230 ---------------------------------~gc~-L~~L~lrnN~l~-t-L~gie~LksL~~LDlsyNll~~hseL~  273 (1096)
T KOG1859|consen  230 ---------------------------------VGCK-LQLLNLRNNALT-T-LRGIENLKSLYGLDLSYNLLSEHSELE  273 (1096)
T ss_pred             ---------------------------------hhhh-heeeeecccHHH-h-hhhHHhhhhhhccchhHhhhhcchhhh
Confidence                                             0022 777888888886 2 2457788888888888888875322  


Q ss_pred             cccCccCCcEEeCCCCcCc
Q 004747          602 GLYRLRSLRALDLSHNSLT  620 (732)
Q Consensus       602 ~l~~l~~L~~LdLs~N~l~  620 (732)
                      .++.+..|+.|+|.+|.+-
T Consensus       274 pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  274 PLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             HHHHHHHHHHHhhcCCccc
Confidence            2667788888888888874

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.16  E-value=1e-07  Score=81.56  Aligned_cols=64  Identities=28%  Similarity=0.398  Sum_probs=39.6

Q ss_pred             cccceEEEccCCcccccCCcccccccCCceeecccccceecCCcccCccCCcEEeCCCCcCcccCC
Q 004747          559 LFSAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIP  624 (732)
Q Consensus       559 l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~l~~l~~L~~LdLs~N~l~~~ip  624 (732)
                      ++.++.|+|++|.++ .+|.++..++.|+.||++.|.+......+..+.++-.||..+|.+. +||
T Consensus        76 f~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na~~-eid  139 (177)
T KOG4579|consen   76 FPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPENARA-EID  139 (177)
T ss_pred             cchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCCCccc-cCc
Confidence            334556666667666 5666666677777777777776632222555666666666666665 444

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.09  E-value=1.1e-06  Score=84.01  Aligned_cols=69  Identities=22%  Similarity=0.105  Sum_probs=33.2

Q ss_pred             ccCCCCEEEeccCCCCCcC----ccccccCcCCcEEEccCCCCCCCCchhhhh---cCCCCCccEEeCCCCcccCC
Q 004747          271 SLQALTHLNLSHNHLNYEI----SPRLVFFEKLLLLDLSFNDLSGPLPSKIAQ---TTEKAGLVLLDLSHNRFSGE  339 (732)
Q Consensus       271 ~l~~L~~L~L~~n~l~~~~----~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~---l~~~~~L~~L~Ls~n~l~~~  339 (732)
                      .+.+|+.||+++|.++-.-    ...+...+.|+.|.+.+|-++..-...+..   -...++|..|-..+|...+.
T Consensus       212 y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~  287 (388)
T COG5238         212 YSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGG  287 (388)
T ss_pred             HhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCc
Confidence            3455566666655554221    122333445666666666555332222111   11234667777777766543

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.08  E-value=5.1e-07  Score=86.24  Aligned_cols=62  Identities=27%  Similarity=0.265  Sum_probs=30.0

Q ss_pred             CccEEeCCCCcccCC----CcccccCCCCCCEEeccCccCCCcccccc------CCCCCCCEEEccCCcCcc
Q 004747          325 GLVLLDLSHNRFSGE----IPLKITELKSLQALFLSNNLLIGEIPARI------GNLTYLQVIDLSHNMLSG  386 (732)
Q Consensus       325 ~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l------~~l~~L~~L~Ls~n~l~~  386 (732)
                      +|+.||+..|.++-.    +...+..++.|+.|.+.+|-++..-...+      ...++|..|-..+|...+
T Consensus       215 ~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~  286 (388)
T COG5238         215 SLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRG  286 (388)
T ss_pred             cceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcC
Confidence            555555555555421    12233444556666666665553322211      123555666666665543

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.07  E-value=8.3e-07  Score=85.95  Aligned_cols=40  Identities=30%  Similarity=0.403  Sum_probs=24.2

Q ss_pred             cCCcEEEeeCccccc--ccCcccCCCCCCCEEEeecccCCCc
Q 004747          180 MNLEKLDFSFNSFCG--EIPESLYYLKSLKHLDLEKNNLTGN  219 (732)
Q Consensus       180 ~~L~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~Ls~n~l~~~  219 (732)
                      +.++.+||.+|.++.  .+-..+.++|.|+.|+++.|.+...
T Consensus        71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~  112 (418)
T KOG2982|consen   71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSD  112 (418)
T ss_pred             hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCc
Confidence            556666666666552  3333456677777777777776543

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.98  E-value=2.5e-06  Score=82.74  Aligned_cols=83  Identities=17%  Similarity=0.247  Sum_probs=52.9

Q ss_pred             CCCCCcEEEcccCceeeecc-ccCCCCCCCCEEEccCCccccc-chhhhhcCCCCCEEEcccCCCccccch------hhh
Q 004747          418 ALDSLKILDISNNQISGEIP-LTLAGLKSLEIVDFSSNNLSGS-LNDAITKWTNLKYFSIARNKLSGNLPN------WLF  489 (732)
Q Consensus       418 ~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~p~------~~~  489 (732)
                      -++++..+.+..|.+...-. ..+...+.+..|+|+.|+|..- --+.+..+++|..|.+++|++...+..      -++
T Consensus       197 ~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIa  276 (418)
T KOG2982|consen  197 IFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIA  276 (418)
T ss_pred             hcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEe
Confidence            35677777788887654322 3345566777888888888632 124567788888888888887644321      235


Q ss_pred             cCCCCCEEEcc
Q 004747          490 SFQAIQMMDFS  500 (732)
Q Consensus       490 ~~~~L~~L~ls  500 (732)
                      .+++++.|+=+
T Consensus       277 RL~~v~vLNGs  287 (418)
T KOG2982|consen  277 RLTKVQVLNGS  287 (418)
T ss_pred             eccceEEecCc
Confidence            56677766533

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.93  E-value=5.5e-06  Score=57.63  Aligned_cols=35  Identities=40%  Similarity=0.580  Sum_probs=15.9

Q ss_pred             CCceeecccccceecCCc-ccCccCCcEEeCCCCcCc
Q 004747          585 GLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLT  620 (732)
Q Consensus       585 ~L~~L~Ls~N~l~~~ip~-l~~l~~L~~LdLs~N~l~  620 (732)
                      +|++|++++|+|+ .+|. ++++++|+.|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            3445555555554 2333 455555555555555544

...

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.90  E-value=7.6e-07  Score=76.34  Aligned_cols=59  Identities=29%  Similarity=0.496  Sum_probs=25.9

Q ss_pred             CccEEeCCCCcccCCCccccc-CCCCCCEEeccCccCCCccccccCCCCCCCEEEccCCcCc
Q 004747          325 GLVLLDLSHNRFSGEIPLKIT-ELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLS  385 (732)
Q Consensus       325 ~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~  385 (732)
                      .|+..++++|.+. .+|..|. ..+.++.|++++|.++ .+|..+..++.|+.++++.|.+.
T Consensus        54 el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~  113 (177)
T KOG4579|consen   54 ELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN  113 (177)
T ss_pred             eEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc
Confidence            4444444444444 2333222 2234444444444444 34444444444444444444444

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.81  E-value=1e-05  Score=56.27  Aligned_cols=39  Identities=44%  Similarity=0.669  Sum_probs=33.1

Q ss_pred             cCCcEEeCCCCcCcccCCcCCCCCCCCCEEEcccCcceee
Q 004747          607 RSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGF  646 (732)
Q Consensus       607 ~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~  646 (732)
                      ++|++|++++|+|+ .+|..+++|++|++|++++|+++..
T Consensus         1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~i   39 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISDI   39 (44)
T ss_dssp             TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred             CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCCC
Confidence            57999999999999 5676799999999999999999854

...

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.55  E-value=0.00021  Score=74.89  Aligned_cols=76  Identities=16%  Similarity=0.267  Sum_probs=52.5

Q ss_pred             ccCCCCCcEEEcccCceeeeccccCCCCCCCCEEEccCCcccccchhhhhcCCCCCEEEcccC-CCccccchhhhcCCCC
Q 004747          416 LDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARN-KLSGNLPNWLFSFQAI  494 (732)
Q Consensus       416 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~p~~~~~~~~L  494 (732)
                      +..+..++.|++++|.++ .+|.   -..+|++|+++++.--..+|+.+  .++|++|++++| .+. .+|.      +|
T Consensus        48 ~~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP~------sL  114 (426)
T PRK15386         48 IEEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLPE------SV  114 (426)
T ss_pred             HHHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-cccc------cc
Confidence            445788999999999887 5562   23469999998854434566554  258999999988 443 4553      47


Q ss_pred             CEEEccCCcC
Q 004747          495 QMMDFSTNKF  504 (732)
Q Consensus       495 ~~L~ls~N~l  504 (732)
                      +.|+++.+..
T Consensus       115 e~L~L~~n~~  124 (426)
T PRK15386        115 RSLEIKGSAT  124 (426)
T ss_pred             ceEEeCCCCC
Confidence            7777766553

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.51  E-value=4.7e-05  Score=86.50  Aligned_cols=138  Identities=20%  Similarity=0.236  Sum_probs=78.6

Q ss_pred             CCCCEEeCCCCCCCCCcCCchhhhcccCCcEEEeeCcccccc-cCcccCCCCCCCEEEeecccCCCccccccccccEEEC
Q 004747          154 RNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGE-IPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNL  232 (732)
Q Consensus       154 ~~L~~L~Ls~n~~~~~~~p~~~~~l~~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~L~~L~L  232 (732)
                      .+|++||+++...+....|..++.+.++|++|.+++-.+... .-.-..++++|..||+|+.+++.              
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~n--------------  187 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISN--------------  187 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccC--------------
Confidence            467777777766665556666666667777777766554321 11223456666666666665542              


Q ss_pred             CCCcCccccCchhhcccccCeeeCCCCcccc-ccchhhhccCCCCEEEeccCCCCCcC--c----cccccCcCCcEEEcc
Q 004747          233 GSNRFSGTLPCFAASAMSLTVLKLDNNSVVG-GIPTCIASLQALTHLNLSHNHLNYEI--S----PRLVFFEKLLLLDLS  305 (732)
Q Consensus       233 ~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~--~----~~l~~l~~L~~L~Ls  305 (732)
                             .  ..++++++|++|.+.+=.+.. ..-..+.++++|+.||+|........  .    +.-..+|+|+.||.|
T Consensus       188 -------l--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcS  258 (699)
T KOG3665|consen  188 -------L--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCS  258 (699)
T ss_pred             -------c--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecC
Confidence                   1  456667777777766655442 11224556777777777766543221  0    111236677777777


Q ss_pred             CCCCCCCCc
Q 004747          306 FNDLSGPLP  314 (732)
Q Consensus       306 ~n~l~~~~p  314 (732)
                      ++.+.+.+-
T Consensus       259 gTdi~~~~l  267 (699)
T KOG3665|consen  259 GTDINEEIL  267 (699)
T ss_pred             CcchhHHHH
Confidence            766664433

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.34  E-value=0.00069  Score=71.06  Aligned_cols=136  Identities=16%  Similarity=0.191  Sum_probs=71.9

Q ss_pred             ccCCCCCCEEECCCCCCCCcccccccCCCCCCEEECCCCCCCCCCCccccCCCCCCEEeCCCCCCCCCcCCchhhhcccC
Q 004747          102 LCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMN  181 (732)
Q Consensus       102 l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~~  181 (732)
                      +..+.+++.|++++|.++ .+|.   -..+|++|+++++.--..+|..+.  ++|++|++++|..+. .+|       .+
T Consensus        48 ~~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~-sLP-------~s  113 (426)
T PRK15386         48 IEEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEIS-GLP-------ES  113 (426)
T ss_pred             HHHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccc-ccc-------cc
Confidence            344566777777777665 3341   123577777776443335555442  467777777773322 233       45


Q ss_pred             CcEEEeeCcccccccCcccCCC-CCCCEEEeeccc-CC-Ccccccc-ccccEEECCCCcCccccCchhhcccccCeeeCC
Q 004747          182 LEKLDFSFNSFCGEIPESLYYL-KSLKHLDLEKNN-LT-GNVHDFY-QSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLD  257 (732)
Q Consensus       182 L~~L~Ls~n~l~~~~p~~l~~l-~~L~~L~Ls~n~-l~-~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls  257 (732)
                      |+.|+++.+....     +..+ ++|+.|.+.+++ .. ...+..+ .+|++|++++|... ..|..+.  .+|+.|+++
T Consensus       114 Le~L~L~~n~~~~-----L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls  185 (426)
T PRK15386        114 VRSLEIKGSATDS-----IKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLH  185 (426)
T ss_pred             cceEEeCCCCCcc-----cccCcchHhheeccccccccccccccccCCcccEEEecCCCcc-cCccccc--ccCcEEEec
Confidence            6777776554321     1222 245566664322 11 1122233 34788888777654 2333222  467788877


Q ss_pred             CC
Q 004747          258 NN  259 (732)
Q Consensus       258 ~n  259 (732)
                      .+
T Consensus       186 ~n  187 (426)
T PRK15386        186 IE  187 (426)
T ss_pred             cc
Confidence            65

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.25  E-value=0.00014  Score=82.70  Aligned_cols=132  Identities=20%  Similarity=0.226  Sum_probs=72.4

Q ss_pred             cEEEEEcCCCCCcc-cccccc-cCCCCCCEEECCCCCCCCc-ccccccCCCCCCEEECCCCCCCCCCCccccCCCCCCEE
Q 004747           83 HVVSINLTDTSLSG-QVHPRL-CKLSFLEFLVLSSNAFTGR-ISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLREL  159 (732)
Q Consensus        83 ~v~~L~L~~~~l~~-~~~~~l-~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L  159 (732)
                      .+++||++|...-. .-+..+ ..||.|+.|.+++-.+... ......++++|+.||+|+.+++..  ..++++++|+.|
T Consensus       123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L  200 (699)
T KOG3665|consen  123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVL  200 (699)
T ss_pred             hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHH
Confidence            56677776654321 112223 3477777777777665432 333455677788888887777744  556777777777


Q ss_pred             eCCCCCCCCCcCCchhhhcccCCcEEEeeCccccccc--C----cccCCCCCCCEEEeecccCC
Q 004747          160 ILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEI--P----ESLYYLKSLKHLDLEKNNLT  217 (732)
Q Consensus       160 ~Ls~n~~~~~~~p~~~~~l~~~L~~L~Ls~n~l~~~~--p----~~l~~l~~L~~L~Ls~n~l~  217 (732)
                      .+.+=.+.....-..+.++ ++|++||+|........  .    +.-..+|+|+.||.|++.+.
T Consensus       201 ~mrnLe~e~~~~l~~LF~L-~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~  263 (699)
T KOG3665|consen  201 SMRNLEFESYQDLIDLFNL-KKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN  263 (699)
T ss_pred             hccCCCCCchhhHHHHhcc-cCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence            7765433222222344555 66666666665443211  0    11123555666665555444

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.20  E-value=0.00065  Score=62.86  Aligned_cols=38  Identities=26%  Similarity=0.351  Sum_probs=19.4

Q ss_pred             ccCCCCCcEEEcccCceeeecc---ccCCCCCCCCEEEccC
Q 004747          416 LDALDSLKILDISNNQISGEIP---LTLAGLKSLEIVDFSS  453 (732)
Q Consensus       416 ~~~l~~L~~L~L~~n~l~~~~p---~~~~~l~~L~~L~Ls~  453 (732)
                      +..++.|++|.+-+|+.+..--   ..+..+++|++||++.
T Consensus       109 La~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  109 LASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             hccCCccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence            3445566666666665542211   1234556666666654

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.06  E-value=0.0022  Score=56.97  Aligned_cols=105  Identities=19%  Similarity=0.223  Sum_probs=34.9

Q ss_pred             cccCCCCCCEEeccCccCCCccccccCCCCCCCEEEccCCcCccccCccccCCcCcceeecccccccccCcccccCCCCC
Q 004747          343 KITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSL  422 (732)
Q Consensus       343 ~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L  422 (732)
                      .|..+++|+.+.+.+ .+.......|.++++|+.+++.++ +.......|.++..++.+.+.+ .+.......|..+++|
T Consensus         7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l   83 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL   83 (129)
T ss_dssp             TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred             HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence            344455555555543 233222334455555555555443 3322223333333444444432 2221222233344444


Q ss_pred             cEEEcccCceeeeccccCCCCCCCCEEEcc
Q 004747          423 KILDISNNQISGEIPLTLAGLKSLEIVDFS  452 (732)
Q Consensus       423 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls  452 (732)
                      +.+++..+ +.......|.++ +|+.+.+.
T Consensus        84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~  111 (129)
T PF13306_consen   84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIP  111 (129)
T ss_dssp             CEEEETTT--BEEHTTTTTT--T--EEE-T
T ss_pred             cccccCcc-ccEEchhhhcCC-CceEEEEC
Confidence            44444433 332223334443 44444444

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.04  E-value=0.001  Score=61.61  Aligned_cols=104  Identities=28%  Similarity=0.226  Sum_probs=48.6

Q ss_pred             CCCEEECCCCCCCCcccccccCCCCCCEEECCCCCCCCCCCccccCCCCCCEEeCCCCCCCCCcCCchhhhcccCCcEEE
Q 004747          107 FLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLD  186 (732)
Q Consensus       107 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~~L~~L~  186 (732)
                      +...+||++|.+..  .+.|..++.|..|.|++|+|+.+.|.--..+++|+.|.|.+|.+-.-.--.-+..+ +.|++|.
T Consensus        43 ~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~-p~L~~Lt  119 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASC-PKLEYLT  119 (233)
T ss_pred             ccceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccC-Cccceee
Confidence            44555666665532  12355566666666666666655444333445555555555532110001112222 4455555


Q ss_pred             eeCccccccc---CcccCCCCCCCEEEeec
Q 004747          187 FSFNSFCGEI---PESLYYLKSLKHLDLEK  213 (732)
Q Consensus       187 Ls~n~l~~~~---p~~l~~l~~L~~L~Ls~  213 (732)
                      +-+|.++..-   --.+..+++|+.||+..
T Consensus       120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             ecCCchhcccCceeEEEEecCcceEeehhh
Confidence            5555443210   11244556666666554

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.95  E-value=0.0024  Score=56.72  Aligned_cols=106  Identities=18%  Similarity=0.210  Sum_probs=49.9

Q ss_pred             ccCCCCCCCEEEccCCcCccccCccccCCcCcceeecccccccccCcccccCCCCCcEEEcccCceeeeccccCCCCCCC
Q 004747          367 RIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSL  446 (732)
Q Consensus       367 ~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L  446 (732)
                      .|.++++|+.+.+.. .+.......|.++.+++.+.+.++ +.......|.++++++.+.+.+ .+.......|..+++|
T Consensus         7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l   83 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL   83 (129)
T ss_dssp             TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred             HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence            466677778777764 454444555666666777766654 4444444566666666666654 3332334455566666


Q ss_pred             CEEEccCCcccccchhhhhcCCCCCEEEccc
Q 004747          447 EIVDFSSNNLSGSLNDAITKWTNLKYFSIAR  477 (732)
Q Consensus       447 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~  477 (732)
                      +.+++..+ +.......|.++ +|+.+.+..
T Consensus        84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIPS  112 (129)
T ss_dssp             CEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred             cccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence            66666544 433334445555 666666554

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=96.61  E-value=0.00015  Score=74.09  Aligned_cols=63  Identities=22%  Similarity=0.164  Sum_probs=32.0

Q ss_pred             CCCCCCEEEccCCcCcccc-----CccccCCcCcceeeccccccc-ccCcccccCCCCCcEEEcccCce
Q 004747          370 NLTYLQVIDLSHNMLSGSI-----PLNIVGCFQLLALIVNNNNLS-GEIQPELDALDSLKILDISNNQI  432 (732)
Q Consensus       370 ~l~~L~~L~Ls~n~l~~~~-----p~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l  432 (732)
                      +++.|+.+.++++......     ...-.+...++.+.+++++.. ...-..+..+++|+.+++.+++-
T Consensus       370 ~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~  438 (483)
T KOG4341|consen  370 NCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQD  438 (483)
T ss_pred             CCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhh
Confidence            4455555555555432111     111233445666666666543 22333456677777777777653

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.59  E-value=0.0012  Score=63.81  Aligned_cols=39  Identities=41%  Similarity=0.460  Sum_probs=18.0

Q ss_pred             ccCCCCCCEEECCCC--CCCCCCCccccCCCCCCEEeCCCC
Q 004747          126 FGGLSGLKTLDLSYN--KFVGVVPDAIMKLRNLRELILKGN  164 (732)
Q Consensus       126 ~~~l~~L~~L~Ls~n--~l~~~~p~~~~~l~~L~~L~Ls~n  164 (732)
                      |..+++|+.|++|.|  ++++..+.-...+++|++|++++|
T Consensus        61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N  101 (260)
T KOG2739|consen   61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN  101 (260)
T ss_pred             CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCC
Confidence            334455555555555  333333333333455555555555

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=96.40  E-value=0.00023  Score=72.73  Aligned_cols=86  Identities=21%  Similarity=0.213  Sum_probs=42.8

Q ss_pred             CCCCEEECCCCCCCCc--ccccccCCCCCCEEECCCCC-CCCCCCcccc-CCCCCCEEeCCCCCCCCCcCCchhhhcccC
Q 004747          106 SFLEFLVLSSNAFTGR--ISTCFGGLSGLKTLDLSYNK-FVGVVPDAIM-KLRNLRELILKGNPELGGVFPGWVGNFSMN  181 (732)
Q Consensus       106 ~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~Ls~n~-l~~~~p~~~~-~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~~  181 (732)
                      ..|+.|.+++++=.+.  +-..-.+++++++|++.++. ++...-..++ .+++|++|+|..+..++...-..++.-+++
T Consensus       138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k  217 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK  217 (483)
T ss_pred             cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence            3566666666543322  22223456677777666664 2222112222 466677777666543333322223333356


Q ss_pred             CcEEEeeCcc
Q 004747          182 LEKLDFSFNS  191 (732)
Q Consensus       182 L~~L~Ls~n~  191 (732)
                      |++|+++++.
T Consensus       218 L~~lNlSwc~  227 (483)
T KOG4341|consen  218 LKYLNLSWCP  227 (483)
T ss_pred             HHHhhhccCc
Confidence            6666666654

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.18  E-value=0.0016  Score=63.05  Aligned_cols=39  Identities=28%  Similarity=0.263  Sum_probs=17.8

Q ss_pred             cCCCCEEEeccC--CCCCcCccccccCcCCcEEEccCCCCC
Q 004747          272 LQALTHLNLSHN--HLNYEISPRLVFFEKLLLLDLSFNDLS  310 (732)
Q Consensus       272 l~~L~~L~L~~n--~l~~~~~~~l~~l~~L~~L~Ls~n~l~  310 (732)
                      +++|+.|.++.|  ++.+.++.-...+++|++++++.|++.
T Consensus        64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~  104 (260)
T KOG2739|consen   64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK  104 (260)
T ss_pred             cchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence            445555555555  333333333333445555555555443

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.88  E-value=0.00058  Score=66.11  Aligned_cols=98  Identities=16%  Similarity=0.169  Sum_probs=72.5

Q ss_pred             CcceeecccccccccCcccccCCCCCcEEEcccCceeeeccccCCCCCCCCEEEccCCcccccc-hhhhhcCCCCCEEEc
Q 004747          397 QLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSL-NDAITKWTNLKYFSI  475 (732)
Q Consensus       397 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~L  475 (732)
                      +.+.|++-++.+++.  .....++.|++|.|+-|+|+..-  .+..|++|++|+|..|.|.+.- -..+.++++|+.|.|
T Consensus        20 ~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL   95 (388)
T KOG2123|consen   20 NVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL   95 (388)
T ss_pred             HhhhhcccCCCccHH--HHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence            445566666666543  22457889999999999998553  4678999999999999987432 134578999999999


Q ss_pred             ccCCCccccch-----hhhcCCCCCEEE
Q 004747          476 ARNKLSGNLPN-----WLFSFQAIQMMD  498 (732)
Q Consensus       476 ~~N~l~~~~p~-----~~~~~~~L~~L~  498 (732)
                      ..|+-.|.-+.     .+..+++|+.||
T Consensus        96 ~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   96 DENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             ccCCcccccchhHHHHHHHHcccchhcc
Confidence            99998877653     456688888886

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.83  E-value=0.0031  Score=36.41  Aligned_cols=19  Identities=58%  Similarity=0.758  Sum_probs=10.0

Q ss_pred             CcEEeCCCCcCcccCCcCCC
Q 004747          609 LRALDLSHNSLTGQIPGNIS  628 (732)
Q Consensus       609 L~~LdLs~N~l~~~ip~~l~  628 (732)
                      |++|||++|+++ .+|.+|+
T Consensus         2 L~~Ldls~n~l~-~ip~~~~   20 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSFS   20 (22)
T ss_dssp             ESEEEETSSEES-EEGTTTT
T ss_pred             ccEEECCCCcCE-eCChhhc
Confidence            455555555555 4444444

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.54  E-value=0.00083  Score=65.07  Aligned_cols=90  Identities=17%  Similarity=0.214  Sum_probs=72.0

Q ss_pred             CCCCCcEEEcccCceeeeccccCCCCCCCCEEEccCCcccccchhhhhcCCCCCEEEcccCCCcccc-chhhhcCCCCCE
Q 004747          418 ALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNL-PNWLFSFQAIQM  496 (732)
Q Consensus       418 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-p~~~~~~~~L~~  496 (732)
                      .+.+.++|+..+|.++++  .....|+.|++|.|+-|+|+..  ..+..|++|++|+|..|.|...- -..+.++++|+.
T Consensus        17 dl~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~   92 (388)
T KOG2123|consen   17 DLENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT   92 (388)
T ss_pred             HHHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence            356788999999999854  3456899999999999999855  34788999999999999987322 245788999999


Q ss_pred             EEccCCcCcccCCcc
Q 004747          497 MDFSTNKFMGFIPDG  511 (732)
Q Consensus       497 L~ls~N~l~~~~p~~  511 (732)
                      |.|..|+=.|.-+..
T Consensus        93 LWL~ENPCc~~ag~n  107 (388)
T KOG2123|consen   93 LWLDENPCCGEAGQN  107 (388)
T ss_pred             HhhccCCcccccchh
Confidence            999999877655443

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.96  E-value=0.01  Score=34.22  Aligned_cols=20  Identities=35%  Similarity=0.413  Sum_probs=12.0

Q ss_pred             ceEEEccCCcccccCCccccc
Q 004747          562 AVGMDLSDNLLHGTIPKGLFQ  582 (732)
Q Consensus       562 L~~LdLs~N~l~g~ip~~l~~  582 (732)
                      |++||+++|+++ .+|.++++
T Consensus         2 L~~Ldls~n~l~-~ip~~~~~   21 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSFSN   21 (22)
T ss_dssp             ESEEEETSSEES-EEGTTTTT
T ss_pred             ccEEECCCCcCE-eCChhhcC
Confidence            456666666666 56655443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=94.55  E-value=0.0083  Score=66.84  Aligned_cols=111  Identities=25%  Similarity=0.111  Sum_probs=49.4

Q ss_pred             ccccCeeeCCCCccccc--cchhhhccCCCCEEEeccC-CCCCcC----ccccccCcCCcEEEccCCC-CCCCCchhhhh
Q 004747          248 AMSLTVLKLDNNSVVGG--IPTCIASLQALTHLNLSHN-HLNYEI----SPRLVFFEKLLLLDLSFND-LSGPLPSKIAQ  319 (732)
Q Consensus       248 ~~~L~~L~Ls~n~l~~~--~~~~l~~l~~L~~L~L~~n-~l~~~~----~~~l~~l~~L~~L~Ls~n~-l~~~~p~~~~~  319 (732)
                      ++.|+.|.+.++.-...  .-.....++.|++|+++++ ......    ......+++|+.|+++++. ++...-..+..
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~  266 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS  266 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence            45666666665533222  2233445666777776652 111111    1123334556666666555 33222222222


Q ss_pred             cCCCCCccEEeCCCCc-ccCC-CcccccCCCCCCEEeccCccC
Q 004747          320 TTEKAGLVLLDLSHNR-FSGE-IPLKITELKSLQALFLSNNLL  360 (732)
Q Consensus       320 l~~~~~L~~L~Ls~n~-l~~~-~p~~l~~l~~L~~L~Ls~n~l  360 (732)
                      .  .++|+.|.+.++. ++.. +-.....++.|++|+++.+..
T Consensus       267 ~--c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~  307 (482)
T KOG1947|consen  267 R--CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG  307 (482)
T ss_pred             h--CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence            1  2255555555444 3321 111223355566666665543

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=93.98  E-value=0.0068  Score=67.52  Aligned_cols=186  Identities=24%  Similarity=0.105  Sum_probs=99.6

Q ss_pred             CCCCCCEEECCCCCCCCc--ccccccCCCCCCEEECCCC-CCCCCCC----ccccCCCCCCEEeCCCCCCCCCcCCchhh
Q 004747          104 KLSFLEFLVLSSNAFTGR--ISTCFGGLSGLKTLDLSYN-KFVGVVP----DAIMKLRNLRELILKGNPELGGVFPGWVG  176 (732)
Q Consensus       104 ~l~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~Ls~n-~l~~~~p----~~~~~l~~L~~L~Ls~n~~~~~~~p~~~~  176 (732)
                      ..+.|+.|.+.++.-...  .-.....++.|+.|+++++ ......+    .....+++|+.|+++++..++...-..+.
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~  265 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA  265 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence            367777777776633222  3344567788888888763 2211111    22345678888888887544444334444


Q ss_pred             hcccCCcEEEeeCcc-cccccC-cccCCCCCCCEEEeecccCCCc--c---ccccccccEEECCCCcCccccCchhhccc
Q 004747          177 NFSMNLEKLDFSFNS-FCGEIP-ESLYYLKSLKHLDLEKNNLTGN--V---HDFYQSLLVLNLGSNRFSGTLPCFAASAM  249 (732)
Q Consensus       177 ~l~~~L~~L~Ls~n~-l~~~~p-~~l~~l~~L~~L~Ls~n~l~~~--~---~~~~~~L~~L~L~~n~l~~~~~~~~~~~~  249 (732)
                      ..+++|++|.+.++. ++...- .....+++|++|+++++.....  .   ....++++.|.+...          ..+.
T Consensus       266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~----------~~c~  335 (482)
T KOG1947|consen  266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSL----------NGCP  335 (482)
T ss_pred             hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhc----------CCCc
Confidence            434688888877776 443221 2234677888888887754311  0   111233443332211          1144


Q ss_pred             ccCeeeCCCCccc---cccchhhhccCCCCEEEeccCCCCCcC-ccccccCcCC
Q 004747          250 SLTVLKLDNNSVV---GGIPTCIASLQALTHLNLSHNHLNYEI-SPRLVFFEKL  299 (732)
Q Consensus       250 ~L~~L~Ls~n~l~---~~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L  299 (732)
                      .++.+.+.+....   ......+..+++++.+.+..+...... ...+.+++.|
T Consensus       336 ~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l  389 (482)
T KOG1947|consen  336 SLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNL  389 (482)
T ss_pred             cHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCccc
Confidence            5555555544331   122234567788888888877633222 2344555555

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=93.32  E-value=0.00085  Score=73.14  Aligned_cols=62  Identities=31%  Similarity=0.299  Sum_probs=31.4

Q ss_pred             cCCCCCCCEEEeecccCCCcccccc--------ccccEEECCCCcCccc----cCchhhcccccCeeeCCCCcc
Q 004747          200 LYYLKSLKHLDLEKNNLTGNVHDFY--------QSLLVLNLGSNRFSGT----LPCFAASAMSLTVLKLDNNSV  261 (732)
Q Consensus       200 l~~l~~L~~L~Ls~n~l~~~~~~~~--------~~L~~L~L~~n~l~~~----~~~~~~~~~~L~~L~Ls~n~l  261 (732)
                      +...+.|+.|++++|.+.+.....+        ..+++|++..|.+++.    +...+.....++.++++.|.+
T Consensus       111 l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l  184 (478)
T KOG4308|consen  111 LKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGL  184 (478)
T ss_pred             hcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhccc
Confidence            4455566666666666653221111        1244455555555432    234444456666666666665

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=93.12  E-value=0.0017  Score=70.79  Aligned_cols=41  Identities=34%  Similarity=0.307  Sum_probs=23.1

Q ss_pred             ccCccCCcEEeCCCCcCcccCCcCC-----CCCCCCCEEEcccCcce
Q 004747          603 LYRLRSLRALDLSHNSLTGQIPGNI-----SSLQELTLLNLSYNSFS  644 (732)
Q Consensus       603 l~~l~~L~~LdLs~N~l~~~ip~~l-----~~l~~L~~L~ls~N~l~  644 (732)
                      ......++.+++++|......+..+     .+. .++.++++.|+++
T Consensus       400 ~~~~~~l~~~~l~~n~~~~~~~~~l~~~~~~~~-~~~~~~l~~~~~~  445 (478)
T KOG4308|consen  400 LASNEKLEILDLSLNSLHDEGAEVLTEQLSRNG-SLKALRLSRNPIT  445 (478)
T ss_pred             hhhcchhhhhhhhcCccchhhHHHHHHhhhhcc-cchhhhhccChhh
Confidence            3345667777777776654433322     123 6666777766654

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=91.30  E-value=0.014  Score=55.27  Aligned_cols=84  Identities=21%  Similarity=0.146  Sum_probs=71.1

Q ss_pred             hcccceEEEccCCcccccCCcccccccCCceeecccccceecCCc-ccCccCCcEEeCCCCcCcccCCcCCCCCCCCCEE
Q 004747          558 QLFSAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIPGNISSLQELTLL  636 (732)
Q Consensus       558 ~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~-l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L  636 (732)
                      .....+.||++.|++. ..-..+..++.|..||++.|++. ..|. ++....+..+++..|..+ ..|.++...+.++++
T Consensus        40 ~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~  116 (326)
T KOG0473|consen   40 SFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKN  116 (326)
T ss_pred             ccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchh
Confidence            3566788999999987 45556777888999999999997 5555 888999999999999988 778899999999999


Q ss_pred             EcccCcce
Q 004747          637 NLSYNSFS  644 (732)
Q Consensus       637 ~ls~N~l~  644 (732)
                      ++-.|.|.
T Consensus       117 e~k~~~~~  124 (326)
T KOG0473|consen  117 EQKKTEFF  124 (326)
T ss_pred             hhccCcch
Confidence            99999874

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=90.93  E-value=0.12  Score=27.62  Aligned_cols=11  Identities=73%  Similarity=0.999  Sum_probs=3.4

Q ss_pred             CcEEeCCCCcC
Q 004747          609 LRALDLSHNSL  619 (732)
Q Consensus       609 L~~LdLs~N~l  619 (732)
                      |+.|+|++|++
T Consensus         3 L~~L~l~~n~L   13 (17)
T PF13504_consen    3 LRTLDLSNNRL   13 (17)
T ss_dssp             -SEEEETSS--
T ss_pred             cCEEECCCCCC
Confidence            34444444443

...

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.27  E-value=0.02  Score=53.29  Aligned_cols=82  Identities=21%  Similarity=0.225  Sum_probs=44.5

Q ss_pred             CCEEECCCCCCCCCCCccccCCCCCCEEeCCCCCCCCCcCCchhhhcccCCcEEEeeCcc-cccccCcccCCCCCCCEEE
Q 004747          132 LKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNS-FCGEIPESLYYLKSLKHLD  210 (732)
Q Consensus       132 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~~L~~L~Ls~n~-l~~~~p~~l~~l~~L~~L~  210 (732)
                      ++.+|-++..|..+--..+.+++.++.|.+.++..+...--..++...++|+.|++++|. |+..--..+..+++|+.|.
T Consensus       103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~  182 (221)
T KOG3864|consen  103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH  182 (221)
T ss_pred             EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence            455555555555444444555555666666555433322222233344677777777664 4443344566677777776


Q ss_pred             eec
Q 004747          211 LEK  213 (732)
Q Consensus       211 Ls~  213 (732)
                      +.+
T Consensus       183 l~~  185 (221)
T KOG3864|consen  183 LYD  185 (221)
T ss_pred             hcC
Confidence            654

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=89.91  E-value=0.0076  Score=57.07  Aligned_cols=82  Identities=16%  Similarity=0.054  Sum_probs=61.6

Q ss_pred             CCcEEEEEcCCCCCcccccccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEECCCCCCCCCCCccccCCCCCCEEe
Q 004747           81 TGHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELI  160 (732)
Q Consensus        81 ~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~  160 (732)
                      ..+|+.||++.+.+.. +-..+..++.+..||++.|++. -.|.+++.+..++.+++..|..+ ..|.+++..+++++++
T Consensus        41 ~kr~tvld~~s~r~vn-~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e  117 (326)
T KOG0473|consen   41 FKRVTVLDLSSNRLVN-LGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNE  117 (326)
T ss_pred             cceeeeehhhhhHHHh-hccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhh
Confidence            4578888888877652 2345666777888888888776 56777888888888888877776 6788888888888888


Q ss_pred             CCCCC
Q 004747          161 LKGNP  165 (732)
Q Consensus       161 Ls~n~  165 (732)
                      +.+|+
T Consensus       118 ~k~~~  122 (326)
T KOG0473|consen  118 QKKTE  122 (326)
T ss_pred             hccCc
Confidence            88774

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=88.44  E-value=0.33  Score=29.13  Aligned_cols=16  Identities=50%  Similarity=0.690  Sum_probs=9.7

Q ss_pred             cCCcEEeCCCCcCccc
Q 004747          607 RSLRALDLSHNSLTGQ  622 (732)
Q Consensus       607 ~~L~~LdLs~N~l~~~  622 (732)
                      ++|++|+|++|+|+..
T Consensus         2 ~~L~~L~L~~N~l~~l   17 (26)
T smart00369        2 PNLRELDLSNNQLSSL   17 (26)
T ss_pred             CCCCEEECCCCcCCcC
Confidence            4566666666666633

>smart00370 LRR Leucine-rich repeats, outliers

Probab=88.44  E-value=0.33  Score=29.13  Aligned_cols=16  Identities=50%  Similarity=0.690  Sum_probs=9.7

Q ss_pred             cCCcEEeCCCCcCccc
Q 004747          607 RSLRALDLSHNSLTGQ  622 (732)
Q Consensus       607 ~~L~~LdLs~N~l~~~  622 (732)
                      ++|++|+|++|+|+..
T Consensus         2 ~~L~~L~L~~N~l~~l   17 (26)
T smart00370        2 PNLRELDLSNNQLSSL   17 (26)
T ss_pred             CCCCEEECCCCcCCcC
Confidence            4566666666666633

>smart00370 LRR Leucine-rich repeats, outliers

Probab=86.45  E-value=0.64  Score=27.84  Aligned_cols=18  Identities=39%  Similarity=0.652  Sum_probs=10.9

Q ss_pred             CCCCEEECCCCCCCCCCC
Q 004747          130 SGLKTLDLSYNKFVGVVP  147 (732)
Q Consensus       130 ~~L~~L~Ls~n~l~~~~p  147 (732)
                      ++|++|+|++|+|....+
T Consensus         2 ~~L~~L~L~~N~l~~lp~   19 (26)
T smart00370        2 PNLRELDLSNNQLSSLPP   19 (26)
T ss_pred             CCCCEEECCCCcCCcCCH
Confidence            456666666666664433

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=86.45  E-value=0.64  Score=27.84  Aligned_cols=18  Identities=39%  Similarity=0.652  Sum_probs=10.9

Q ss_pred             CCCCEEECCCCCCCCCCC
Q 004747          130 SGLKTLDLSYNKFVGVVP  147 (732)
Q Consensus       130 ~~L~~L~Ls~n~l~~~~p  147 (732)
                      ++|++|+|++|+|....+
T Consensus         2 ~~L~~L~L~~N~l~~lp~   19 (26)
T smart00369        2 PNLRELDLSNNQLSSLPP   19 (26)
T ss_pred             CCCCEEECCCCcCCcCCH
Confidence            456666666666664433

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=83.18  E-value=0.55  Score=27.52  Aligned_cols=15  Identities=33%  Similarity=0.618  Sum_probs=6.1

Q ss_pred             CCCCEEEccCCcccc
Q 004747          444 KSLEIVDFSSNNLSG  458 (732)
Q Consensus       444 ~~L~~L~Ls~N~l~~  458 (732)
                      ++|++|++++|++++
T Consensus         2 ~~L~~L~l~~n~i~~   16 (24)
T PF13516_consen    2 PNLETLDLSNNQITD   16 (24)
T ss_dssp             TT-SEEE-TSSBEHH
T ss_pred             CCCCEEEccCCcCCH
Confidence            344455555554443

...

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=82.54  E-value=0.33  Score=45.45  Aligned_cols=82  Identities=20%  Similarity=0.165  Sum_probs=43.8

Q ss_pred             CcceeecccccccccCcccccCCCCCcEEEcccCceeeecc-ccCC-CCCCCCEEEccCC-cccccchhhhhcCCCCCEE
Q 004747          397 QLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIP-LTLA-GLKSLEIVDFSSN-NLSGSLNDAITKWTNLKYF  473 (732)
Q Consensus       397 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p-~~~~-~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L  473 (732)
                      .++.++-++..+..+--+.+.++++++.|.+.+|.--+..- ..+. -.++|+.|++++| +|++.--.++..+++|+.|
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L  181 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL  181 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence            34445555555544444455566666666666654321100 0111 2356777777765 4665555566667777776


Q ss_pred             EcccC
Q 004747          474 SIARN  478 (732)
Q Consensus       474 ~L~~N  478 (732)
                      .+.+-
T Consensus       182 ~l~~l  186 (221)
T KOG3864|consen  182 HLYDL  186 (221)
T ss_pred             HhcCc
Confidence            66543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	732
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		4e-46
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		5e-46
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		3e-14
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		1e-18
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		1e-15
3a79_B	562	Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex Len		6e-05
4b8c_D	727	Nuclease Module Of The Yeast Ccr4-Not Complex Lengt		3e-04

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  182 bits (463), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 203/669 (30%), Positives = 301/669 (44%), Gaps = 95/669 (14%)
Query: 73  TGVACNFQTGHVVSINLTDTSLSGQVHP--RLCKLSFLEFLVLSSNA--FTGRISTCFGG 128
           +G  C   +  + S++L+  SLSG V     L   S L+FL +SSN   F G++S   GG
Sbjct: 94  SGFKC---SASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVS---GG 147
Query: 129 L--SGLKTLDLSYNKFVG------VVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSM 180
           L  + L+ LDLS N   G      V+ D   +L+    L + GN   G V         +
Sbjct: 148 LKLNSLEVLDLSANSISGANVVGWVLSDGCGELK---HLAISGNKISGDVDVSRC----V 200
Query: 181 NLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQS------LLVLNLGS 234
           NLE LD S N+F   IP  L    +L+HLD+  N L+G   DF ++      L +LN+ S
Sbjct: 201 NLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSG---DFSRAISTCTELKLLNISS 256
Query: 235 NRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIA-SLQALTXXXXXXXXXXYEISPRL 293
           N+F G +P       SL  L L  N   G IP  ++ +   LT            + P  
Sbjct: 257 NQFVGPIPPLPLK--SLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFF 314
Query: 294 VFFEKXXXXXXXXXXXXGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELK----- 348
                            G LP  +    +  GL +LDLS N FSGE+P  +T L      
Sbjct: 315 GSCSLLESLALSSNNFSGELP--MDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLT 372
Query: 349 ----------------------SLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSG 386
                                 +LQ L+L NN   G+IP  + N + L  + LS N LSG
Sbjct: 373 LDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSG 432
Query: 387 SIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSL 446
           +IP ++    +L  L +  N L GEI  EL  + +L+ L +  N ++GEIP  L+   +L
Sbjct: 433 TIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNL 492
Query: 447 EIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMG 506
             +  S+N L+G +   I +  NL    ++ N  SGN+P  L   +++  +D +TN F G
Sbjct: 493 NWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNG 552
Query: 507 FIPDGNF----NFSLNF---------NKSDIGRSMPAKSFVLPRSMVIRISVTAIDT-NE 552
            IP   F      + NF             + +       +L    +    +  + T N 
Sbjct: 553 TIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNP 612
Query: 553 LSFNYQLF------------SAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQV 600
            +   +++            S + +D+S N+L G IPK +  +  L  LNL  N + G +
Sbjct: 613 CNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSI 672
Query: 601 PG-LYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVPWKQGYQKFPGA 659
           P  +  LR L  LDLS N L G+IP  +S+L  LT ++LS N+ SG +P    ++ FP A
Sbjct: 673 PDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPA 732
Query: 660 -FAGNPNLC 667
            F  NP LC
Sbjct: 733 KFLNNPGLC 741

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  182 bits (463), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 203/669 (30%), Positives = 301/669 (44%), Gaps = 95/669 (14%)
Query: 73  TGVACNFQTGHVVSINLTDTSLSGQVHP--RLCKLSFLEFLVLSSNA--FTGRISTCFGG 128
           +G  C   +  + S++L+  SLSG V     L   S L+FL +SSN   F G++S   GG
Sbjct: 91  SGFKC---SASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVS---GG 144
Query: 129 L--SGLKTLDLSYNKFVG------VVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSM 180
           L  + L+ LDLS N   G      V+ D   +L+    L + GN   G V         +
Sbjct: 145 LKLNSLEVLDLSANSISGANVVGWVLSDGCGELK---HLAISGNKISGDVDVSRC----V 197
Query: 181 NLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQS------LLVLNLGS 234
           NLE LD S N+F   IP  L    +L+HLD+  N L+G   DF ++      L +LN+ S
Sbjct: 198 NLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSG---DFSRAISTCTELKLLNISS 253
Query: 235 NRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIA-SLQALTXXXXXXXXXXYEISPRL 293
           N+F G +P       SL  L L  N   G IP  ++ +   LT            + P  
Sbjct: 254 NQFVGPIPPLPLK--SLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFF 311
Query: 294 VFFEKXXXXXXXXXXXXGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELK----- 348
                            G LP  +    +  GL +LDLS N FSGE+P  +T L      
Sbjct: 312 GSCSLLESLALSSNNFSGELP--MDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLT 369
Query: 349 ----------------------SLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSG 386
                                 +LQ L+L NN   G+IP  + N + L  + LS N LSG
Sbjct: 370 LDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSG 429
Query: 387 SIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSL 446
           +IP ++    +L  L +  N L GEI  EL  + +L+ L +  N ++GEIP  L+   +L
Sbjct: 430 TIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNL 489
Query: 447 EIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMG 506
             +  S+N L+G +   I +  NL    ++ N  SGN+P  L   +++  +D +TN F G
Sbjct: 490 NWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNG 549
Query: 507 FIPDGNF----NFSLNF---------NKSDIGRSMPAKSFVLPRSMVIRISVTAIDT-NE 552
            IP   F      + NF             + +       +L    +    +  + T N 
Sbjct: 550 TIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNP 609
Query: 553 LSFNYQLF------------SAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQV 600
            +   +++            S + +D+S N+L G IPK +  +  L  LNL  N + G +
Sbjct: 610 CNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSI 669
Query: 601 PG-LYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVPWKQGYQKFPGA 659
           P  +  LR L  LDLS N L G+IP  +S+L  LT ++LS N+ SG +P    ++ FP A
Sbjct: 670 PDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPA 729
Query: 660 -FAGNPNLC 667
            F  NP LC
Sbjct: 730 KFLNNPGLC 738

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 77.0 bits (188), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 94/349 (26%), Positives = 147/349 (42%), Gaps = 104/349 (29%)
Query: 353 LFLSNNLLIGEI-----------------------------------------------P 365
           LFLSN+ + G +                                               P
Sbjct: 79  LFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFP 138
Query: 366 ARIG---NLTYLQVIDLSHNMLSGSIPLNIV---GCFQLLALIVNNNNLSGEIQPELDAL 419
            ++     L  L+V+DLS N +SG+  +  V   GC +L  L ++ N +SG++  ++   
Sbjct: 139 GKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV--DVSRC 196
Query: 420 DSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNK 479
            +L+ LD+S+N  S  IP  L    +L+ +D S N LSG  + AI+  T LK  +I+ N+
Sbjct: 197 VNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQ 255
Query: 480 LSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSM 539
             G +P      +++Q +  + NKF G IPD                             
Sbjct: 256 FVGPIPP--LPLKSLQYLSLAENKFTGEIPD----------------------------- 284
Query: 540 VIRISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQ 599
                  A DT             G+DLS N  +G +P        LE L LS N   G+
Sbjct: 285 ---FLSGACDT-----------LTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGE 330
Query: 600 VP--GLYRLRSLRALDLSHNSLTGQIPGNISSLQ-ELTLLNLSYNSFSG 645
           +P   L ++R L+ LDLS N  +G++P ++++L   L  L+LS N+FSG
Sbjct: 331 LPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSG 379

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 91.7 bits (226), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 76/240 (31%), Positives = 122/240 (50%), Gaps = 24/240 (10%)
Query: 364 IPARIGNLTYLQVIDLSH-NMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSL 422
           IP+ + NL YL  + +   N L G IP  I    QL  L + + N+SG I   L  + +L
Sbjct: 68  IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 423 KILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNL-KYFSIARNKLS 481
             LD S N +SG +P +++ L +L  + F  N +SG++ D+   ++ L    +I+RN+L+
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187
Query: 482 GNLPNWLFSFQAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVI 541
           G +P   F+   +  +D S N   G   D +  F  + N   I  +  + +F L +    
Sbjct: 188 GKIPP-TFANLNLAFVDLSRNMLEG---DASVLFGSDKNTQKIHLAKNSLAFDLGKV--- 240
Query: 542 RISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVP 601
                      LS N       G+DL +N ++GT+P+GL QL+ L  LN+SFN L G++P
Sbjct: 241 ----------GLSKNLN-----GLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 82.0 bits (201), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 74/264 (28%), Positives = 116/264 (43%), Gaps = 47/264 (17%)
Query: 406 NNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAIT 465
           NNL G I P +  L  L  L I++  +SG IP  L+ +K+L  +DFS N LSG+L  +I+
Sbjct: 87  NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146
Query: 466 KWTNLKYFSIARNKLSGNLPNWLFSFQAI-QMMDFSTNKFMGFIPDGNFNFSLNFNKSDI 524
              NL   +   N++SG +P+   SF  +   M  S N+  G IP    N +L F     
Sbjct: 147 SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAF----- 201
Query: 525 GRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGTIPKGLFQLQ 584
                                                   +DLS N+L G         +
Sbjct: 202 ----------------------------------------VDLSRNMLEGDASVLFGSDK 221
Query: 585 GLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFS 644
             + ++L+ N L   +  +   ++L  LDL +N + G +P  ++ L+ L  LN+S+N+  
Sbjct: 222 NTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC 281
Query: 645 GFVPWKQGYQKFP-GAFAGNPNLC 667
           G +P     Q+F   A+A N  LC
Sbjct: 282 GEIPQGGNLQRFDVSAYANNKCLC 305

>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex Length = 562

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 51/216 (23%), Positives = 97/216 (44%), Gaps = 14/216 (6%)
Query: 324 AGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIG--EIPARIGNLTYLQVIDLSH 381
           +    L+ + N F+  +    + LK LQ L L  N L    ++     N++ L+ +D+S 
Sbjct: 353 SSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSL 412
Query: 382 NML-SGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTL 440
           N L S +          +L L +++N L+G +   L     +K+LD+ NN+I   IP  +
Sbjct: 413 NSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPP--KVKVLDLHNNRIMS-IPKDV 469
Query: 441 AGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFS 500
             L++L+ ++ +SN L    +    + T+L+Y  +  N        W  +   I+ +   
Sbjct: 470 THLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNP-------WDCTCPGIRYLSEW 522
Query: 501 TNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLP 536
            NK  G + +   + + +  K   G   P +S + P
Sbjct: 523 INKHSGVVRNSAGSVAPDSAKCS-GSGKPVRSIICP 557

>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex Length = 727

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/49 (51%), Positives = 34/49 (69%), Gaps = 2/49 (4%)
Query: 350 LQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQL 398
           L  L+L+ N L  E+PA I NL+ L+V+DLSHN L+ S+P  +  CFQL
Sbjct: 249 LTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQL 295

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	732
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-135
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-114
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-79
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-32
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-77
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-54
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-53
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-48
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-72
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-71
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-66
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-62
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-58
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-55
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-54
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-28
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-67
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-56
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-39
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-65
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-51
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-21
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-63
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-62
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-58
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-56
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-56
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-34
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-62
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-60
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-59
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-52
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-49
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-58
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-56
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-44
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-42
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-32
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-45
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-45
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	8e-36
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-42
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-38
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-36
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-34
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-26
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-39
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-36
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-33
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-31
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-39
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-33
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-32
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-32
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-09
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-37
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	9e-36
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-33
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-21
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-20
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-35
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-35
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-35
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-34
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-26
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-35
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-32
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-24
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-19
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-13
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-11
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	8e-34
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-30
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-24
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-21
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-20
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-17
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	8e-34
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-24
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-12
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	7e-12
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-32
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-26
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-25
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	9e-20
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-16
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-12
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-30
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-27
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-25
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	9e-25
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-20
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-09
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-07
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-29
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	7e-29
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	9e-29
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	7e-26
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-21
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-19
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-09
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-29
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-28
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-26
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	9e-26
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-22
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-21
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-09
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-27
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	7e-21
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-18
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-17
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-15
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-25
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-18
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-25
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-24
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-24
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-21
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	7e-21
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-18
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-14
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-13
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-12
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-08
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-25
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-24
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-19
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-18
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-14
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-14
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-24
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-20
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-19
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-24
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-21
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-16
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-15
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-14
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-14
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-07
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-23
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-22
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-21
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-17
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	8e-16
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-12
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-11
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-08
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-23
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-23
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-22
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-23
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-21
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-16
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-11
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	7e-22
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-19
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-19
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-14
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-14
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-06
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-20
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	9e-19
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-18
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	9e-15
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-08
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-07
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-19
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	7e-17
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-16
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	6e-13
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-10
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-09
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-04
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	8e-19
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-15
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-13
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-18
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-18
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-18
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	6e-17
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	8e-17
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	7e-16
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-10
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-07
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-18
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-16
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-16
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-12
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-11
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	8e-09
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-18
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	8e-14
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-09
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	6e-09
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	7e-09
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-16
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	8e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-16
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	4e-15
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	9e-14
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-16
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-15
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	7e-13
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-11
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-07
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-14
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-10
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	5e-08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	8e-14
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-09
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-08
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	7e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-13
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-11
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	8e-10
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	8e-13
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-12
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-08
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-08
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	8e-08
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	5e-07
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	9e-13
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-12
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	9e-12
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-08
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-12
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	7e-12
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-10
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-10
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	7e-08
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-06
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-12
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-11
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-09
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	6e-07
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	5e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	4e-11
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-10
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-06
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	7e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	7e-11
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	4e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	6e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-10
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	5e-09
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	6e-09
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	5e-09
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	5e-08
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-07
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-08
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	6e-07
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	8e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	8e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	9e-08
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	5e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	7e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	1e-07
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	1e-07
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	4e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	6e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	7e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	6e-07
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	4e-05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	4e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-06
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	7e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-04
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-05
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-04
3e6j_A	229	Variable lymphocyte receptor diversity region; var	1e-05
3e6j_A	229	Variable lymphocyte receptor diversity region; var	4e-04
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	2e-05
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	9e-05

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  415 bits (1070), Expect = e-135
 Identities = 183/598 (30%), Positives = 286/598 (47%), Gaps = 21/598 (3%)

Query: 83  HVVSINLTDTSLSGQVHPRLC---KLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSY 139
            +  ++L+  S+SG              L+ L +S N  +G +         L+ LD+S 
Sbjct: 152 SLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSS 209

Query: 140 NKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPES 199
           N F   +P  +     L+ L + GN +L G F   +   +  L+ L+ S N F G IP  
Sbjct: 210 NNFSTGIP-FLGDCSALQHLDISGN-KLSGDFSRAISTCT-ELKLLNISSNQFVGPIPPL 266

Query: 200 LYYLKSLKHLDLEKNNLTGNVHDFY----QSLLVLNLGSNRFSGTLPCFAASAMSLTVLK 255
              LKSL++L L +N  TG + DF      +L  L+L  N F G +P F  S   L  L 
Sbjct: 267 P--LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLA 324

Query: 256 LDNNSVVGGIPT-CIASLQALTHLNLSHNHLNYEISPRLV-FFEKLLLLDLSFNDLSGPL 313
           L +N+  G +P   +  ++ L  L+LS N  + E+   L      LL LDLS N+ SGP+
Sbjct: 325 LSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPI 384

Query: 314 PSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTY 373
              + Q   K  L  L L +N F+G+IP  ++    L +L LS N L G IP+ +G+L+ 
Sbjct: 385 LPNLCQNP-KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSK 443

Query: 374 LQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQIS 433
           L+ + L  NML G IP  ++    L  LI++ N+L+GEI   L    +L  + +SNN+++
Sbjct: 444 LRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLT 503

Query: 434 GEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQA 493
           GEIP  +  L++L I+  S+N+ SG++   +    +L +  +  N  +G +P  +F    
Sbjct: 504 GEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSG 563

Query: 494 IQMMDFSTNKFMGFIPDGNF--NFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTN 551
               +F   K   +I +           N  +       +   L       I+      +
Sbjct: 564 KIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGH 623

Query: 552 ELSFNYQLFSAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLR 610
                    S + +D+S N+L G IPK +  +  L  LNL  N + G +P  +  LR L 
Sbjct: 624 TSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLN 683

Query: 611 ALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVPWKQGYQKFPG-AFAGNPNLC 667
            LDLS N L G+IP  +S+L  LT ++LS N+ SG +P    ++ FP   F  NP LC
Sbjct: 684 ILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLC 741

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  361 bits (929), Expect = e-114
 Identities = 165/623 (26%), Positives = 262/623 (42%), Gaps = 95/623 (15%)

Query: 42  EDKASLLLFKSLVQDPTQKLSSW-VGSNCTNWTGVACNFQTGHVVSINLTDTSLSGQVHP 100
            +   L+ FK ++ D    L  W    N   + GV C      V SI+L+   L+     
Sbjct: 12  REIHQLISFKDVLPDKN-LLPDWSSNKNPCTFDGVTCR--DDKVTSIDLSSKPLNV---- 64

Query: 101 RLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELI 160
                                +S+    L+GL++L LS +   G V        +L  L 
Sbjct: 65  -----------------GFSAVSSSLLSLTGLESLFLSNSHINGSVSG-FKCSASLTSLD 106

Query: 161 LKGNPELGGVFP--GWVGNFSMNLEKLDFSFNSFCGEIPESLYY-LKSLKHLDLEKNNLT 217
           L  N  L G       +G+ S  L+ L+ S N+       S    L SL+ LDL  N+++
Sbjct: 107 LSRN-SLSGPVTTLTSLGSCS-GLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSIS 164

Query: 218 GNVHDFYQ------SLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIAS 271
           G     +        L  L +  N+ SG +        +L  L + +N+   GIP  +  
Sbjct: 165 GANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCV--NLEFLDVSSNNFSTGIPF-LGD 221

Query: 272 LQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDL 331
             AL HL++S N L+ + S  +    +L LL++S N   GP+P    +      L  L L
Sbjct: 222 CSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLK-----SLQYLSL 276

Query: 332 SHNRFSGEIPLKIT-ELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPL 390
           + N+F+GEIP  ++    +L  L LS N   G +P   G+ + L+ + LS N  SG +P+
Sbjct: 277 AENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPM 336

Query: 391 NIVG-CFQLLALIVNNNNLSGEIQPELDAL-DSLKILDISNNQISGEIPLTLAG--LKSL 446
           + +     L  L ++ N  SGE+   L  L  SL  LD+S+N  SG I   L      +L
Sbjct: 337 DTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTL 396

Query: 447 EIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMG 506
           + +   +N  +G +   ++  + L    ++ N LSG +P+ L S   ++ +    N   G
Sbjct: 397 QELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEG 456

Query: 507 FIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVGMD 566
            IP                                          EL +   L +   + 
Sbjct: 457 EIPQ-----------------------------------------ELMYVKTLET---LI 472

Query: 567 LSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVP-GLYRLRSLRALDLSHNSLTGQIPG 625
           L  N L G IP GL     L +++LS N L G++P  + RL +L  L LS+NS +G IP 
Sbjct: 473 LDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA 532

Query: 626 NISSLQELTLLNLSYNSFSGFVP 648
            +   + L  L+L+ N F+G +P
Sbjct: 533 ELGDCRSLIWLDLNTNLFNGTIP 555

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  268 bits (687), Expect = 3e-79
 Identities = 105/362 (29%), Positives = 165/362 (45%), Gaps = 12/362 (3%)

Query: 81  TGHVVSINLTDTSLSGQVHPRLCK--LSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLS 138
           +  +++++L+  + SG + P LC+   + L+ L L +N FTG+I       S L +L LS
Sbjct: 367 SASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLS 426

Query: 139 YNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPE 198
           +N   G +P ++  L  LR+L L  N  L G  P  +      LE L   FN   GEIP 
Sbjct: 427 FNYLSGTIPSSLGSLSKLRDLKLWLN-MLEGEIPQELMYVK-TLETLILDFNDLTGEIPS 484

Query: 199 SLYYLKSLKHLDLEKNNLTGNVHDF---YQSLLVLNLGSNRFSGTLPCFAASAMSLTVLK 255
            L    +L  + L  N LTG +  +    ++L +L L +N FSG +P       SL  L 
Sbjct: 485 GLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLD 544

Query: 256 LDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPS 315
           L+ N   G IP  +         N         I       +K      +  +  G    
Sbjct: 545 LNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKN--DGMKKECHGAGNLLEFQGIRSE 602

Query: 316 KIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQ 375
           ++ + +        +++   + G          S+  L +S N+L G IP  IG++ YL 
Sbjct: 603 QLNRLS---TRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLF 659

Query: 376 VIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGE 435
           +++L HN +SGSIP  +     L  L +++N L G I   + AL  L  +D+SNN +SG 
Sbjct: 660 ILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGP 719

Query: 436 IP 437
           IP
Sbjct: 720 IP 721

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  131 bits (333), Expect = 6e-32
 Identities = 54/250 (21%), Positives = 95/250 (38%), Gaps = 47/250 (18%)

Query: 403 VNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSL-- 460
              N     +   L +L  L+ L +SN+ I+G +        SL  +D S N+LSG +  
Sbjct: 60  KPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLDLSRNSLSGPVTT 118

Query: 461 NDAITKWTNLKYFSIARNKLSGNLP-NWLFSFQAIQMMDFSTNKFMGFIPDGNFNFSLNF 519
             ++   + LK+ +++ N L      +      +++++D S N   G             
Sbjct: 119 LTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVV--------- 169

Query: 520 NKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGTIPKG 579
                                               +        + +S N + G +   
Sbjct: 170 --------------------------------GWVLSDGCGELKHLAISGNKISGDVD-- 195

Query: 580 LFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLS 639
           + +   LE+L++S N     +P L    +L+ LD+S N L+G     IS+  EL LLN+S
Sbjct: 196 VSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNIS 255

Query: 640 YNSFSGFVPW 649
            N F G +P 
Sbjct: 256 SNQFVGPIPP 265

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 54.9 bits (133), Expect = 7e-08
 Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 5/67 (7%)

Query: 589 LNLSFNFLDGQV----PGLYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFS 644
           ++LS   L+         L  L  L +L LS++ + G + G       LT L+LS NS S
Sbjct: 55  IDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG-FKCSASLTSLDLSRNSLS 113

Query: 645 GFVPWKQ 651
           G V    
Sbjct: 114 GPVTTLT 120

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  259 bits (664), Expect = 3e-77
 Identities = 86/605 (14%), Positives = 192/605 (31%), Gaps = 82/605 (13%)

Query: 68  NCTNWTGVACNFQTGHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCF- 126
                 GV+ N   G V  ++L     SG+V   + +L+ LE L L S+           
Sbjct: 68  MWGAQPGVSLN-SNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGP 126

Query: 127 ---GGLSGLKTLDLSYNKFVGVVPDAIMKLR--NLRELILKGNPELGGVFPGWVGNFSMN 181
                    +        +     D   +    +L +  +  +P+   +        ++ 
Sbjct: 127 KGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSI-KKSSRI-TLK 184

Query: 182 LEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTL 241
             ++    N+    + +++  L  L+   +  +          ++    N    +   T 
Sbjct: 185 DTQIGQLSNNI-TFVSKAVMRLTKLRQFYMGNSPFVAEN--ICEAWENENSEYAQQYKTE 241

Query: 242 PCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHL--------NYEISPRL 293
                +   LT +++ N   +  +PT + +L  +  +N++ N          +++     
Sbjct: 242 DLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADA 301

Query: 294 VFFEKLLLLDLSFNDL-SGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQA 352
              EK+ ++ + +N+L + P+ + + +  +   L +L+  +N+  G++P        L +
Sbjct: 302 PVGEKIQIIYIGYNNLKTFPVETSLQKMKK---LGMLECLYNQLEGKLP-AFGSEIKLAS 357

Query: 353 LFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSG-SIPLNIVGCFQLLALIVNNNNLSG- 410
           L L+ N +        G    ++ +  +HN L       +      + A+  + N +   
Sbjct: 358 LNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSV 417

Query: 411 ------EIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSG------ 458
                  + P      ++  +++SNNQIS       +    L  ++   N L+       
Sbjct: 418 DGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSL 477

Query: 459 -SLNDAITKWTNLKYFSIARNKLSGNLPNWLF-SFQAIQMMDFSTNKFMGFIPDGNFNFS 516
              N+       L    +  NKL+    ++   +   +  +D S N F    P    N  
Sbjct: 478 KDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLN-- 534

Query: 517 LNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGTI 576
                                                S           D   N      
Sbjct: 535 ------------------------------------SSTLKGFGIRNQRDAQGNRTLREW 558

Query: 577 PKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQELTLL 636
           P+G+     L  L +  N +      +    ++  LD+  N         +    E  + 
Sbjct: 559 PEGITLCPSLTQLQIGSNDIRKVNEKI--TPNISVLDIKDNPNISIDLSYVCPYIEAGMY 616

Query: 637 NLSYN 641
            L Y+
Sbjct: 617 MLFYD 621

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  195 bits (497), Expect = 9e-54
 Identities = 66/428 (15%), Positives = 134/428 (31%), Gaps = 45/428 (10%)

Query: 86  SINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGV 145
              + ++    +      +    E+               +  L  L  +++     +  
Sbjct: 210 QFYMGNSPFVAENICEAWENENSEYAQQYKT-----EDLKWDNLKDLTDVEVYNCPNLTK 264

Query: 146 VPDAIMKLRNLRELILKGNPELGGVFPGWVGNF------SMNLEKLDFSFNSFC-GEIPE 198
           +P  +  L  ++ + +  N  + G                  ++ +   +N+     +  
Sbjct: 265 LPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVET 324

Query: 199 SLYYLKSLKHLDLEKNNLTGNVHDFYQ--SLLVLNLGSNRFSGTLPCFAASAMSLTVLKL 256
           SL  +K L  L+   N L G +  F     L  LNL  N+ +     F      +  L  
Sbjct: 325 SLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSF 384

Query: 257 DNNSVVGGIP--TCIASLQALTHLNLSHNHLN-------YEISPRLVFFEKLLLLDLSFN 307
            +N +   IP      S+  ++ ++ S+N +          + P       +  ++LS N
Sbjct: 385 AHNKL-KYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNN 443

Query: 308 DLSGPLPSKIAQTTEKAGLVLLDLSHNRFSG-------EIPLKITELKSLQALFLSNNLL 360
            +S       +  +    L  ++L  N  +        +          L ++ L  N L
Sbjct: 444 QISKFPKELFSTGSP---LSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKL 500

Query: 361 IGEIPA-RIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNN------NNLSGEIQ 413
                  R   L YL  IDLS+N  S   P   +    L    + N      N    E  
Sbjct: 501 TKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWP 559

Query: 414 PELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYF 473
             +    SL  L I +N I   +   +    ++ ++D   N         +  +     +
Sbjct: 560 EGITLCPSLTQLQIGSNDIRK-VNEKI--TPNISVLDIKDNPNISIDLSYVCPYIEAGMY 616

Query: 474 SIARNKLS 481
            +  +K  
Sbjct: 617 MLFYDKTQ 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  194 bits (495), Expect = 2e-53
 Identities = 70/439 (15%), Positives = 147/439 (33%), Gaps = 55/439 (12%)

Query: 102 LCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELIL 161
           + +L+ L    + ++ F              +  +  Y +           L++L ++ +
Sbjct: 202 VMRLTKLRQFYMGNSPFVAEN-----ICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEV 256

Query: 162 KGNPELGGVFPGWVGNFSMNLEKLDFSFNSF--------CGEIPESLYYLKSLKHLDLEK 213
              P L    P ++      ++ ++ + N            +        + ++ + +  
Sbjct: 257 YNCPNLT-KLPTFLKALP-EMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGY 314

Query: 214 NNLT--------GNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGI 265
           NNL           +    + L +L    N+  G LP F  S + L  L L  N +    
Sbjct: 315 NNLKTFPVETSLQKM----KKLGMLECLYNQLEGKLPAFG-SEIKLASLNLAYNQITEIP 369

Query: 266 PTCIASLQALTHLNLSHNHLNYEISPRLVF--FEKLLLLDLSFNDLSGPLPSKIAQTTEK 323
                  + + +L+ +HN L   I           +  +D S+N++              
Sbjct: 370 ANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPT 428

Query: 324 AG----LVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLL-------IGEIPARIGNLT 372
                 +  ++LS+N+ S       +    L ++ L  N+L       + +      N  
Sbjct: 429 PFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTY 488

Query: 373 YLQVIDLSHNMLSGSIPLNIVGCF--QLLALIVNNNNLSGEIQPELDALDSLKILDISN- 429
            L  IDL  N L+  +  +        L+ + ++ N+ S     +     +LK   I N 
Sbjct: 489 LLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQ 546

Query: 430 -----NQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNL 484
                N+   E P  +    SL  +   SN++   +N+ IT   N+    I  N      
Sbjct: 547 RDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKIT--PNISVLDIKDNPNISID 603

Query: 485 PNWLFSFQAIQMMDFSTNK 503
            +++  +    M     +K
Sbjct: 604 LSYVCPYIEAGMYMLFYDK 622

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  178 bits (454), Expect = 7e-48
 Identities = 57/445 (12%), Positives = 129/445 (28%), Gaps = 64/445 (14%)

Query: 250 SLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNY----EISPRLVFFEKLLLLDLS 305
            +T L L+     G +P  I  L  L  L L  +             +            
Sbjct: 82  RVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKM 141

Query: 306 FNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIP 365
                        +      L+   ++ +     I            +   +N +   + 
Sbjct: 142 RMHYQKTFVDYDPREDFS-DLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNI-TFVS 199

Query: 366 ARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKIL 425
             +  LT L+   + ++                                + D L  L  +
Sbjct: 200 KAVMRLTKLRQFYMGNSPFVAENICEAWENENS-----EYAQQYKTEDLKWDNLKDLTDV 254

Query: 426 DISNNQISGEIPLTLAGLKSLEIVDFSSNNL--------SGSLNDAITKWTNLKYFSIAR 477
           ++ N     ++P  L  L  +++++ + N                       ++   I  
Sbjct: 255 EVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGY 314

Query: 478 NKL-SGNLPNWLFSFQAIQMMDFSTNKFMGFIPD-GNF----NFSLNFNKSDIGRSMPAK 531
           N L +  +   L   + + M++   N+  G +P  G+     + +L +N+          
Sbjct: 315 NNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQ---------- 364

Query: 532 SFVLPRSMVIRISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGTIPKGLF--QLQGLEYL 589
                        +T I  N   F  Q+ +   +  + N L   IP       +  +  +
Sbjct: 365 -------------ITEIPANFCGFTEQVEN---LSFAHNKLK-YIPNIFDAKSVSVMSAI 407

Query: 590 NLSFNFLDGQV--------PGLYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYN 641
           + S+N +            P  ++  ++ +++LS+N ++       S+   L+ +NL  N
Sbjct: 408 DFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGN 467

Query: 642 SFSGFVPWKQGYQKFPGAFAGNPNL 666
             +         +     F     L
Sbjct: 468 MLTEIPKNS--LKDENENFKNTYLL 490

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 47.0 bits (112), Expect = 2e-05
 Identities = 10/41 (24%), Positives = 16/41 (39%)

Query: 605 RLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSG 645
               +  L L     +G++P  I  L EL +L L  +    
Sbjct: 79  SNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKV 119

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  246 bits (631), Expect = 5e-72
 Identities = 110/587 (18%), Positives = 200/587 (34%), Gaps = 67/587 (11%)

Query: 86  SINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGV 145
            +NL    LS          + L  L L SN+     +  F     L TLDLS+N     
Sbjct: 77  VLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSST 136

Query: 146 VPDAIMKLRNLRELILKGNPELGGVFPGWVGNFS-MNLEKLDFSFNSFCGEIPESLYYLK 204
                ++L NL+EL+L  N ++  +    +  F+  +L+KL+ S N      P   + + 
Sbjct: 137 KLGTQVQLENLQELLLSNN-KIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIG 195

Query: 205 SLKHLDLEKNNLTGNVHDFYQ------SLLVLNLGSNRFSGTLPCFAAS--AMSLTVLKL 256
            L  L L    L  ++ +         S+  L+L +++ S T           +LT+L L
Sbjct: 196 RLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDL 255

Query: 257 DNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISP---------RLVFFEKLLLLDLSFN 307
             N++        A L  L +  L +N++ +  S           L          +S  
Sbjct: 256 SYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLA 315

Query: 308 DLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLL-IGEIPA 366
            L                L  L++  N   G      T L +L+ L LSN+   +  +  
Sbjct: 316 SLPKIDDFSFQWLKC---LEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTN 372

Query: 367 RIG---NLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQP-ELDALDSL 422
                   + L +++L+ N +S            L  L +  N +  E+   E   L+++
Sbjct: 373 ETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENI 432

Query: 423 KILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSG--SLNDAITKWTNLKYFSIARNKL 480
             + +S N+       + A + SL+ +      L    S         NL    ++ N +
Sbjct: 433 FEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNI 492

Query: 481 SGNLPNWLFSFQAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMV 540
           +    + L   + ++++D   N         N    + F K                   
Sbjct: 493 ANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKG------------------ 534

Query: 541 IRISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQV 600
                             L     ++L  N       +    L  L+ ++L  N L+   
Sbjct: 535 ------------------LSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLP 576

Query: 601 PG-LYRLRSLRALDLSHNSLTGQIPGNIS-SLQELTLLNLSYNSFSG 645
                   SL++L+L  N +T         + + LT L++ +N F  
Sbjct: 577 ASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDC 623

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  245 bits (628), Expect = 1e-71
 Identities = 117/567 (20%), Positives = 197/567 (34%), Gaps = 66/567 (11%)

Query: 105 LSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGN 164
            + +  L L+ N      +  F   S L +LD+ +N    + P+   KL  L+ L L+ N
Sbjct: 24  PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN 83

Query: 165 PELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTG-NVHDF 223
             L  +        + NL +L    NS            K+L  LDL  N L+   +   
Sbjct: 84  E-LSQLSDKTFAFCT-NLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQ 141

Query: 224 YQ--SLLVLNLGSNRFSGTLP-CFAASA-MSLTVLKLDNNSVVGGIPTCIASLQALTHLN 279
            Q  +L  L L +N+            A  SL  L+L +N +    P C  ++  L  L 
Sbjct: 142 VQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLF 201

Query: 280 LSHNHLNYEISPRLVFFE---KLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRF 336
           L++  L   ++ +L        +  L LS + LS    +      +   L +LDLS+N  
Sbjct: 202 LNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLST-TSNTTFLGLKWTNLTMLDLSYNNL 260

Query: 337 SGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCF 396
           +         L  L+  FL  N +       +  L  ++ ++L  +    SI        
Sbjct: 261 NVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSI-------- 312

Query: 397 QLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNL 456
                  +  +L          L  L+ L++ +N I G       GL +L+ +  S++  
Sbjct: 313 -------SLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFT 365

Query: 457 SGSLNDAIT----KWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDGN 512
           S       T      + L   ++ +NK+S    +       ++++D   N+    +    
Sbjct: 366 SLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQE 425

Query: 513 FNFSLNFNKSDIGRSMPAKSFVLPRSMVIRIS---VTAIDTNELSFNYQLFSAVGMDLSD 569
           +                     L     I +S      +  N  +    L     + L  
Sbjct: 426 WRG-------------------LENIFEIYLSYNKYLQLTRNSFALVPSLQR---LMLRR 463

Query: 570 NLLHG--TIPKGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLT------ 620
             L    + P     L+ L  L+LS N +       L  L  L  LDL HN+L       
Sbjct: 464 VALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHA 523

Query: 621 --GQIPGNISSLQELTLLNLSYNSFSG 645
             G     +  L  L +LNL  N F  
Sbjct: 524 NPGGPIYFLKGLSHLHILNLESNGFDE 550

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  231 bits (592), Expect = 2e-66
 Identities = 118/596 (19%), Positives = 189/596 (31%), Gaps = 90/596 (15%)

Query: 86  SINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFG--GLSGLKTLDLSYNKFV 143
           +++L+   LS        +L  L+ L+LS+N      S        S LK L+LS N+  
Sbjct: 125 TLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIK 184

Query: 144 GVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFS--MNLEKLDFSFNSFCGEIPESLY 201
              P     +  L  L L     LG      +       ++  L  S +        +  
Sbjct: 185 EFSPGCFHAIGRLFGLFLNNVQ-LGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFL 243

Query: 202 YLK--SLKHLDLEKNNLTGNVHDFYQ---SLLVLNLGSNRFSGTLPCFAASAMSLTVLKL 256
            LK  +L  LDL  NNL    +D +     L    L  N              ++  L L
Sbjct: 244 GLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNL 303

Query: 257 DNNSVVGGI---------PTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFN 307
             +     I               L+ L HLN+  N +    S        L  L LS +
Sbjct: 304 KRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNS 363

Query: 308 DLS-GPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPA 366
             S   L ++   +   + L +L+L+ N+ S       + L  L+ L L  N +  E+  
Sbjct: 364 FTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTG 423

Query: 367 R-IGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSG--EIQPELDALDSLK 423
           +    L  +  I LS+N        +      L  L++    L            L +L 
Sbjct: 424 QEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLT 483

Query: 424 ILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGN 483
           ILD+SNN I+      L GL+ LEI+D   NNL+                 + ++   G 
Sbjct: 484 ILDLSNNNIANINDDMLEGLEKLEILDLQHNNLA----------------RLWKHANPGG 527

Query: 484 LPNWLFSFQAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRI 543
              +L     + +++  +N F     +                                 
Sbjct: 528 PIYFLKGLSHLHILNLESNGFDEIPVE--------------------------------- 554

Query: 544 SVTAIDTNELSFNYQLFSAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGL 603
                      F   LF    +DL  N L+            L+ LNL  N +      +
Sbjct: 555 ----------VFK-DLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKV 603

Query: 604 YR--LRSLRALDLSHNSLTGQIPG-----NISSLQELTLLNLSYNSFSGFVPWKQG 652
           +    R+L  LD+  N             N  +     +  LS +      P   G
Sbjct: 604 FGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNTPPHYHG 659

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  219 bits (559), Expect = 6e-62
 Identities = 97/506 (19%), Positives = 173/506 (34%), Gaps = 61/506 (12%)

Query: 177 NFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQ---SLLVLNLG 233
           +   N+  L+ + N        +      L  LD+  N ++    +  Q    L VLNL 
Sbjct: 22  DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQ 81

Query: 234 SNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRL 293
            N  S       A   +LT L L +NS+           + L  L+LSHN L+       
Sbjct: 82  HNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQ 141

Query: 294 VFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQAL 353
           V  E L  L LS N +   L S+       + L  L+LS N+     P     +  L  L
Sbjct: 142 VQLENLQELLLSNNKIQA-LKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGL 200

Query: 354 FLSNNLLIGEIPARIG---NLTYLQVIDLSHNMLSGSIPLNIVGCF--QLLALIVNNNNL 408
           FL+N  L   +  ++      T ++ + LS++ LS +     +G     L  L ++ NNL
Sbjct: 201 FLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNL 260

Query: 409 SGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWT 468
           +         L  L+   +  N I      +L GL ++  ++   +    S++       
Sbjct: 261 NVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISL------ 314

Query: 469 NLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDGNFNFS------LNFNKS 522
                      L           + ++ ++   N   G   +            L+ + +
Sbjct: 315 ---------ASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFT 365

Query: 523 DIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGTIPKGLFQ 582
            + R++  ++FV      + I                     ++L+ N +          
Sbjct: 366 SL-RTLTNETFVSLAHSPLHI---------------------LNLTKNKISKIESDAFSW 403

Query: 583 LQGLEYLNLSFNFLDGQVPG--LYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSY 640
           L  LE L+L  N +  ++ G     L ++  + LS+N        + + +  L  L L  
Sbjct: 404 LGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRR 463

Query: 641 NSFSGFVPWKQGYQKFPGAFAGNPNL 666
            +              P  F    NL
Sbjct: 464 VALKNV-------DSSPSPFQPLRNL 482

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  209 bits (535), Expect = 1e-58
 Identities = 95/453 (20%), Positives = 169/453 (37%), Gaps = 58/453 (12%)

Query: 83  HVVSINLTDTSLSGQVHPRLC---KLSFLEFLVLSSNAFTGRISTCFGGL--SGLKTLDL 137
            +  + L +  L   +  +LC     + +  L LS++  +   +T F GL  + L  LDL
Sbjct: 196 RLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDL 255

Query: 138 SYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGN--------FSMNLEKLDFSF 189
           SYN    V  D+   L  L    L+ N  +  +F   +             +  K   S 
Sbjct: 256 SYNNLNVVGNDSFAWLPQLEYFFLEYN-NIQHLFSHSLHGLFNVRYLNLKRSFTKQSISL 314

Query: 190 NSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQ---SLLVLNLGSNRFSGTLPCFAA 246
            S       S  +LK L+HL++E N++ G   + +    +L  L+L ++  S        
Sbjct: 315 ASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNET 374

Query: 247 ----SAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLL 302
               +   L +L L  N +        + L  L  L+L  N +  E++ +          
Sbjct: 375 FVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQ---------- 424

Query: 303 DLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLL-- 360
              +  L                +  + LS+N++          + SLQ L L    L  
Sbjct: 425 --EWRGLEN--------------IFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKN 468

Query: 361 IGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLS--------GEI 412
           +   P+    L  L ++DLS+N ++      + G  +L  L + +NNL+        G  
Sbjct: 469 VDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGP 528

Query: 413 QPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKY 472
              L  L  L IL++ +N            L  L+I+D   NNL+           +LK 
Sbjct: 529 IYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKS 588

Query: 473 FSIARNKLSGNLPNWLF-SFQAIQMMDFSTNKF 504
            ++ +N ++         +F+ +  +D   N F
Sbjct: 589 LNLQKNLITSVEKKVFGPAFRNLTELDMRFNPF 621

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  201 bits (513), Expect = 1e-55
 Identities = 111/476 (23%), Positives = 177/476 (37%), Gaps = 38/476 (7%)

Query: 205 SLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGG 264
           S +  D     LT    D   ++ VLNL  N+              LT L +  N++   
Sbjct: 5   SHEVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKL 64

Query: 265 IPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKA 324
            P     L  L  LNL HN L+        F   L  L L  N +     +   +     
Sbjct: 65  EPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKN-- 122

Query: 325 GLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPA--RIGNLTYLQVIDLSHN 382
            L+ LDLSHN  S        +L++LQ L LSNN +         I   + L+ ++LS N
Sbjct: 123 -LITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSN 181

Query: 383 MLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPEL---DALDSLKILDISNNQISGEIPLT 439
            +    P       +L  L +NN  L   +  +L    A  S++ L +SN+Q+S     T
Sbjct: 182 QIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTT 241

Query: 440 LAGLK--SLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMM 497
             GLK  +L ++D S NNL+   ND+      L+YF +  N +     + L     ++ +
Sbjct: 242 FLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYL 301

Query: 498 DFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFV-LPRSMVIRISVTAIDTNELSFN 556
           +   +     I   +               +   SF  L     + +    I   + +  
Sbjct: 302 NLKRSFTKQSISLASLP------------KIDDFSFQWLKCLEHLNMEDNDIPGIKSNMF 349

Query: 557 YQLFSAVGMDLSDNLL-HGTIPKGLFQ---LQGLEYLNLSFNFLDGQVPG-LYRLRSLRA 611
             L +   + LS++     T+    F       L  LNL+ N +          L  L  
Sbjct: 350 TGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEV 409

Query: 612 LDLSHNSLTGQIPGN-ISSLQELTLLNLSYNSFSGFVPWKQGYQKFPGAFAGNPNL 666
           LDL  N +  ++ G     L+ +  + LSYN +               +FA  P+L
Sbjct: 410 LDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQL---------TRNSFALVPSL 456

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  199 bits (507), Expect = 1e-54
 Identities = 84/409 (20%), Positives = 143/409 (34%), Gaps = 29/409 (7%)

Query: 78  NFQTGHVVSINLTDTSLSGQVHP--RLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTL 135
                 + +++L+++ LS   +      K + L  L LS N      +  F  L  L+  
Sbjct: 218 ELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYF 277

Query: 136 DLSYNKFVGVVPDAIMKLRNLRELILKGN--------PELGGVFPGWVGNFSMNLEKLDF 187
            L YN    +   ++  L N+R L LK +          L  +           LE L+ 
Sbjct: 278 FLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLK-CLEHLNM 336

Query: 188 SFNSFCGEIPESLYYLKSLKHLDLEKNNLTGN-------VHDFYQSLLVLNLGSNRFSGT 240
             N   G        L +LK+L L  +  +         V   +  L +LNL  N+ S  
Sbjct: 337 EDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKI 396

Query: 241 LPCFAASAMSLTVLKLDNNSVVGGIP-TCIASLQALTHLNLSHNHLNYEISPRLVFFEKL 299
                +    L VL L  N +   +       L+ +  + LS+N               L
Sbjct: 397 ESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSL 456

Query: 300 LLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNL 359
             L L    L   + S  +       L +LDLS+N  +      +  L+ L+ L L +N 
Sbjct: 457 QRLMLRRVALKN-VDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNN 515

Query: 360 L--------IGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGE 411
           L         G     +  L++L +++L  N             F+L  + +  NNL+  
Sbjct: 516 LARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTL 575

Query: 412 IQPELDALDSLKILDISNNQISGEIPLTLA-GLKSLEIVDFSSNNLSGS 459
                +   SLK L++  N I+           ++L  +D   N    +
Sbjct: 576 PASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCT 624

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  118 bits (298), Expect = 7e-28
 Identities = 61/307 (19%), Positives = 100/307 (32%), Gaps = 48/307 (15%)

Query: 372 TYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQ 431
              +V D SH  L+  +P ++     +  L + +N L             L  LD+  N 
Sbjct: 4   VSHEVADCSHLKLT-QVPDDLPT--NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNT 60

Query: 432 ISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSF 491
           IS   P     L  L++++   N LS   +      TNL    +  N +     N     
Sbjct: 61  ISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQ 120

Query: 492 QAIQMMDFSTNKFMGFIPDGNFNFS------LNFNKSDIGRSMPAKSFVLPRSMVIRISV 545
           + +  +D S N                    L+ NK                     I  
Sbjct: 121 KNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK---------------------IQA 159

Query: 546 TAIDTNELSFNYQLFSAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG--- 602
              +  ++  N  L     ++LS N +    P     +  L  L L+   L   +     
Sbjct: 160 LKSEELDIFANSSLKK---LELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLC 216

Query: 603 -LYRLRSLRALDLSHNSLTGQIPGNISSLQ--ELTLLNLSYNSFSGFVPWKQGYQKFPGA 659
                 S+R L LS++ L+         L+   LT+L+LSYN+ +              +
Sbjct: 217 LELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVG---------NDS 267

Query: 660 FAGNPNL 666
           FA  P L
Sbjct: 268 FAWLPQL 274

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  232 bits (593), Expect = 3e-67
 Identities = 105/555 (18%), Positives = 184/555 (33%), Gaps = 39/555 (7%)

Query: 105 LSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGN 164
            +  E L  S N      +T F  L  L  LDL+  +   +  D       L  L+L  N
Sbjct: 32  PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN 91

Query: 165 PELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTG-NVHDF 223
           P L  +    +      L+ L F            L+  K+L+ L L  N+++   +   
Sbjct: 92  P-LIFMAETALSGPK-ALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKG 149

Query: 224 YQ--SLLVLNLGSNRFSGTLPCFAASAMSLTVLKLD-NNSVVGGIPTCIASLQALTHLNL 280
           +    L VL+  +N          +S    T L L+ N + + GI            LN 
Sbjct: 150 FPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNF 209

Query: 281 SHNHLNYEISPRLVF--FEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSG 338
                   I   L     + L L      D     P+       +  +  ++L  + F  
Sbjct: 210 GGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLC-EMSVESINLQKHYFFN 268

Query: 339 EIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQL 398
                      LQ L L+    + E+P+ +  L+ L+ + LS N       ++      L
Sbjct: 269 ISSNTFHCFSGLQELDLTAT-HLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSL 327

Query: 399 LALIVNNNNLSGEIQPE-LDALDSLKILDISNNQI--SGEIPLTLAGLKSLEIVDFSSNN 455
             L +  N    E+    L+ L++L+ LD+S++ I  S    L L  L  L+ ++ S N 
Sbjct: 328 THLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE 387

Query: 456 LSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFS-FQAIQMMDFSTNKFMGFIPDGNFN 514
                 +A  +   L+   +A  +L        F     +++++ S +            
Sbjct: 388 PLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDG 447

Query: 515 FS----LNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVGMDLSDN 570
                 LN   +                           TN L    +L     + LS  
Sbjct: 448 LPALQHLNLQGNHF------------------PKGNIQKTNSLQTLGRLEI---LVLSFC 486

Query: 571 LLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNISSL 630
            L          L+ + +++LS N L               L+L+ N ++  +P  +  L
Sbjct: 487 DLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHISIILPSLLPIL 546

Query: 631 QELTLLNLSYNSFSG 645
            +   +NL  N    
Sbjct: 547 SQQRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  201 bits (512), Expect = 6e-56
 Identities = 101/536 (18%), Positives = 177/536 (33%), Gaps = 67/536 (12%)

Query: 102 LCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELIL 161
                 L+ LVL++N       T   G   LK L         +    +   + L  L L
Sbjct: 77  FQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYL 136

Query: 162 KGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKH--LDLEKNNLTGN 219
             N  +  +           L+ LDF  N+      E +  L+   +  L+L  N++ G 
Sbjct: 137 GSN-HISSIKLPKGFPTE-KLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGI 194

Query: 220 VHDFYQ--SLLVLNLGSNRFSGTLP--CFAASAMSLTVLKLDNNSVVGGIPTCIASLQA- 274
               +       LN G  +    +      ++  SL +   ++       P     L   
Sbjct: 195 EPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEM 254

Query: 275 -LTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSH 333
            +  +NL  ++     S     F  L  LDL+   LS  LPS +   +    L  L LS 
Sbjct: 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSE-LPSGLVGLST---LKKLVLSA 310

Query: 334 NRFSGEIPLKITELKSLQALFLSNNLLIGEIPAR-IGNLTYLQVIDLSHNML--SGSIPL 390
           N+F     +  +   SL  L +  N    E+    + NL  L+ +DLSH+ +  S    L
Sbjct: 311 NKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNL 370

Query: 391 NIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLT-LAGLKSLEIV 449
            +     L +L ++ N               L++LD++  ++  +   +    L  L+++
Sbjct: 371 QLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVL 430

Query: 450 DFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQ---AIQMMDFSTNKFMG 506
           + S + L  S          L++ ++  N           S Q    ++++  S      
Sbjct: 431 NLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDL-- 488

Query: 507 FIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVGMD 566
                               S+   +F   + M                         +D
Sbjct: 489 -------------------SSIDQHAFTSLKMMNH-----------------------VD 506

Query: 567 LSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYR-LRSLRALDLSHNSLTG 621
           LS N L  +            YLNL+ N +   +P L   L   R ++L  N L  
Sbjct: 507 LSHNRLT-SSSIEALSHLKGIYLNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  153 bits (388), Expect = 2e-39
 Identities = 62/367 (16%), Positives = 118/367 (32%), Gaps = 33/367 (8%)

Query: 302 LDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLI 361
            +     L+  +P  +  +TE      L+ S N          + L +L  L L+   + 
Sbjct: 17  YNCENLGLNE-IPGTLPNSTEC-----LEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIY 70

Query: 362 GEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDS 421
                   +   L  + L+ N L       + G   L  L      +S      L    +
Sbjct: 71  WIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKT 130

Query: 422 LKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLK--YFSIARNK 479
           L+ L + +N IS          + L+++DF +N +     + ++          ++  N 
Sbjct: 131 LESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGND 190

Query: 480 LSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSM 539
           ++G +    F     Q ++F   + +  I  G  N ++                 L    
Sbjct: 191 IAG-IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQ---------------SLWLGT 234

Query: 540 VIRISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQ 599
              +    I         ++ S   ++L  +              GL+ L+L+   L   
Sbjct: 235 FEDMDDEDISPAVFEGLCEM-SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSEL 293

Query: 600 VPGLYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVPWKQGYQKFPGA 659
             GL  L +L+ L LS N        + S+   LT L++  N+    +          G 
Sbjct: 294 PSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELG--------TGC 345

Query: 660 FAGNPNL 666
                NL
Sbjct: 346 LENLENL 352

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  230 bits (588), Expect = 7e-65
 Identities = 96/629 (15%), Positives = 193/629 (30%), Gaps = 90/629 (14%)

Query: 50  FKSLVQDPTQKLSSWVGSN----CTNWTGVACNFQTGHVVSINLTDTSLSGQVHPRLCKL 105
           + S   + T    +W  +       +  GV  +   G V  ++L      G+V   + +L
Sbjct: 288 YYSGTINNTIHSLNWNFNKELDMWGDQPGVDLD-NNGRVTGLSLAGFGAKGRVPDAIGQL 346

Query: 106 SFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVP------DAIMKLRNLREL 159
           + L+ L   +++ T                +   ++            D  + L +L + 
Sbjct: 347 TELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQD 406

Query: 160 ILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGN 219
            +  NPE+  +      +      ++    N     I +++  L  L+ +    +  T +
Sbjct: 407 AINRNPEMKPIKKDSRISLKDT--QIGNLTNRI-TFISKAIQRLTKLQIIYFANSPFTYD 463

Query: 220 VHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLN 279
                      N    +         ++   LT ++L N   +  +P  +  L  L  LN
Sbjct: 464 NIA--VDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLN 521

Query: 280 LSHNHLNY---------EISPRLVFFEKLLLLDLSFNDLSG-PLPSKIAQTTEKAGLVLL 329
           ++ N              ++       K+ +  + +N+L   P  + + +  +   L LL
Sbjct: 522 IACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVK---LGLL 578

Query: 330 DLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIG-NLTYLQVIDLSHNMLSGSI 388
           D  HN+    +         L  L L  N +  EIP         ++ +  SHN L   I
Sbjct: 579 DCVHNKVR-HLEA-FGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YI 634

Query: 389 P--LNIVGCFQLLALIVNNNNLSGE-----IQPELDALDSLKILDISNNQISGEIPLTLA 441
           P   N    + + ++  + N +  E        +     +   + +S N+I        A
Sbjct: 635 PNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFA 694

Query: 442 GLKSLEIVDFSSNNLS-------GSLNDAITKWTNLKYFSIARNKLSGNLPNWLFS-FQA 493
               +  +  S+N ++          +        L    +  NKL+    ++  +    
Sbjct: 695 TGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPY 754

Query: 494 IQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNEL 553
           +  MD S N F    P    N S                            + A     +
Sbjct: 755 LSNMDVSYNCFSS-FPTQPLNSS---------------------------QLKAFG---I 783

Query: 554 SFNYQLFSAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALD 613
                       D   N +    P G+     L  L +  N +      L     L  LD
Sbjct: 784 RHQ--------RDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKL--TPQLYILD 833

Query: 614 LSHNSLTGQIPGNISSLQELTLLNLSYNS 642
           ++ N        ++    E  +  L Y+ 
Sbjct: 834 IADNPNISIDVTSVCPYIEAGMYVLLYDK 862

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  191 bits (487), Expect = 2e-51
 Identities = 80/550 (14%), Positives = 174/550 (31%), Gaps = 88/550 (16%)

Query: 129 LSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFS 188
            +  + LD    ++     +  +   N          ++ G  PG   + +  +  L  +
Sbjct: 275 KAIWEALDGKNWRYYSGTINNTIHSLNWN---FNKELDMWGDQPGVDLDNNGRVTGLSLA 331

Query: 189 FNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTL----PCF 244
                G +P+++  L  LK L    ++ T +   F    L  ++   R           F
Sbjct: 332 GFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMF 391

Query: 245 AASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNY------EISPRLVFFEK 298
                 L +  L  +++       +  ++  + ++L    +         IS  +    K
Sbjct: 392 LDYDQRLNLSDLLQDAINRNPE--MKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTK 449

Query: 299 LLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNN 358
           L ++  + +  +    +              +  + +      L  + LK L  + L N 
Sbjct: 450 LQIIYFANSPFTYDNIA--------VDWEDANSDYAKQYENEELSWSNLKDLTDVELYNC 501

Query: 359 LLIGEIPARIGNLTYLQVIDLSHNMLSG---------SIPLNIVGCFQLLALIVNNNNLS 409
             + ++P  + +L  LQ ++++ N              +  +     ++    +  NNL 
Sbjct: 502 PNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE 561

Query: 410 G-EIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWT 468
                  L  +  L +LD  +N++   +         L  +    N +     D      
Sbjct: 562 EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTD 619

Query: 469 NLKYFSIARNKLSGNLPNWLF--SFQAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGR 526
            ++    + NKL   +PN     S   +  +DFS NK      + + +            
Sbjct: 620 QVEGLGFSHNKLKY-IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMD---------- 668

Query: 527 SMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGTIPKGLFQLQGL 586
                                        +Y+  +A  + LS N +     +       +
Sbjct: 669 -----------------------------DYKGINASTVTLSYNEIQKFPTELFATGSPI 699

Query: 587 EYLNLSFNFL--------DGQVPGLYRLRSLRALDLSHNSLTGQIPGNI--SSLQELTLL 636
             + LS N +          +         L  +DL  N LT  +  +   ++L  L+ +
Sbjct: 700 STIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS-LSDDFRATTLPYLSNM 758

Query: 637 NLSYNSFSGF 646
           ++SYN FS F
Sbjct: 759 DVSYNCFSSF 768

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 99.2 bits (247), Expect = 2e-21
 Identities = 32/230 (13%), Positives = 65/230 (28%), Gaps = 26/230 (11%)

Query: 102 LCKLSFLEFLVLSSNAFTGRISTCFGGLSG-----LKTLDLSYNKFVGVVPDAIMKLRNL 156
              +  +  +  S N            +         T+ LSYN+      +       +
Sbjct: 640 AKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPI 699

Query: 157 RELILKGN------PELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYY--LKSLKH 208
             +IL  N              G   N    L  +D  FN     + +      L  L +
Sbjct: 700 STIILSNNLMTSIPENSLKPKDGNYKNTY-LLTTIDLRFNKL-TSLSDDFRATTLPYLSN 757

Query: 209 LDLEKNNLTGNVHDFYQ--SLLVLNL------GSNRFSGTLPCFAASAMSLTVLKLDNNS 260
           +D+  N  +           L    +        NR     P    +  SL  L++ +N 
Sbjct: 758 MDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSND 817

Query: 261 VVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLS 310
           +   +   +     L  L+++ N         +  + +  +  L ++   
Sbjct: 818 I-RKVDEKL--TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ 864

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  213 bits (544), Expect = 2e-63
 Identities = 87/343 (25%), Positives = 137/343 (39%), Gaps = 72/343 (20%)

Query: 329 LDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGE--IPARIGNLTYLQVIDLSHNMLSG 386
            D  +  + G +    T+   +  L LS   L     IP+ + NL YL  + +       
Sbjct: 31  TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIG------ 84

Query: 387 SIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSL 446
                              NNL G I P +  L  L  L I++  +SG IP  L+ +K+L
Sbjct: 85  -----------------GINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127

Query: 447 EIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQA-IQMMDFSTNKFM 505
             +DFS N LSG+L  +I+   NL   +   N++SG +P+   SF      M  S N+  
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187

Query: 506 GFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVGM 565
           G IP    N +L F                                             +
Sbjct: 188 GKIPPTFANLNLAF---------------------------------------------V 202

Query: 566 DLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPG 625
           DLS N+L G         +  + ++L+ N L   +  +   ++L  LDL +N + G +P 
Sbjct: 203 DLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQ 262

Query: 626 NISSLQELTLLNLSYNSFSGFVPWKQGYQKFPG-AFAGNPNLC 667
            ++ L+ L  LN+S+N+  G +P     Q+F   A+A N  LC
Sbjct: 263 GLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLC 305

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  211 bits (539), Expect = 1e-62
 Identities = 90/382 (23%), Positives = 141/382 (36%), Gaps = 90/382 (23%)

Query: 40  NLEDKASLLLFKSLVQDPTQKLSSWVGSN---CTNWTGVACNF--QTGHVVSINLTDTSL 94
           N +DK +LL  K  + +PT  LSSW+ +       W GV C+   QT  V +++L+  +L
Sbjct: 4   NPQDKQALLQIKKDLGNPTT-LSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNL 62

Query: 95  SGQVH--PRLCKLSFLEFLVLSS-NAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIM 151
                    L  L +L FL +   N   G I      L+ L  L +++    G +PD + 
Sbjct: 63  PKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLS 122

Query: 152 KLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDL 211
           +++ L  L                          DFS+N+  G +P S+  L +L  +  
Sbjct: 123 QIKTLVTL--------------------------DFSYNALSGTLPPSISSLPNLVGITF 156

Query: 212 EKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIAS 271
           + N ++G                                              IP    S
Sbjct: 157 DGNRISGA---------------------------------------------IPDSYGS 171

Query: 272 LQAL-THLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLD 330
              L T + +S N L  +I P       L  +DLS N L G                 + 
Sbjct: 172 FSKLFTSMTISRNRLTGKI-PPTFANLNLAFVDLSRNMLEGDASVLFGSDKN---TQKIH 227

Query: 331 LSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPL 390
           L+ N  + ++  K+   K+L  L L NN + G +P  +  L +L  +++S N L G IP 
Sbjct: 228 LAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286

Query: 391 NIVGCFQLLALI--VNNNNLSG 410
              G  Q   +    NN  L G
Sbjct: 287 G--GNLQRFDVSAYANNKCLCG 306

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  199 bits (508), Expect = 3e-58
 Identities = 84/304 (27%), Positives = 130/304 (42%), Gaps = 28/304 (9%)

Query: 183 EKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLP 242
              D    ++ G + ++      + +LDL   NL                        +P
Sbjct: 29  PTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPK-------------------PYPIP 69

Query: 243 CFAASAMSLTVLKL-DNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLL 301
              A+   L  L +   N++VG IP  IA L  L +L ++H +++  I   L   + L+ 
Sbjct: 70  SSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129

Query: 302 LDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSL-QALFLSNNLL 360
           LD S+N LSG LP  I+       LV +    NR SG IP        L  ++ +S N L
Sbjct: 130 LDFSYNALSGTLPPSISSLPN---LVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL 186

Query: 361 IGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALD 420
            G+IP    NL  L  +DLS NML G   +          + +  N+L+ ++  ++    
Sbjct: 187 TGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSK 244

Query: 421 SLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNK- 479
           +L  LD+ NN+I G +P  L  LK L  ++ S NNL G +             + A NK 
Sbjct: 245 NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI-PQGGNLQRFDVSAYANNKC 303

Query: 480 LSGN 483
           L G+
Sbjct: 304 LCGS 307

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  194 bits (495), Expect = 2e-56
 Identities = 80/327 (24%), Positives = 127/327 (38%), Gaps = 53/327 (16%)

Query: 302 LDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGE--IPLKITELKSLQALFLSN-N 358
            D       G L     QT     +  LDLS         IP  +  L  L  L++   N
Sbjct: 31  TDCCNRTWLGVLCDTDTQTYR---VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGIN 87

Query: 359 LLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDA 418
            L+G IP  I  LT L  + ++H  +SG+IP  +     L+ L  + N LSG + P + +
Sbjct: 88  NLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISS 147

Query: 419 LDSLKILDISNNQISGEIPLTLAGLKSL-EIVDFSSNNLSGSLNDAITKWTNLKYFSIAR 477
           L +L  +    N+ISG IP +      L   +  S N L+G +        NL +  ++R
Sbjct: 148 LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSR 206

Query: 478 NKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPR 537
           N L G+      S +  Q +  + N     +                          L +
Sbjct: 207 NMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG----------------------KVGLSK 244

Query: 538 SMVIRISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLD 597
           ++                         +DL +N ++GT+P+GL QL+ L  LN+SFN L 
Sbjct: 245 NLNG-----------------------LDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC 281

Query: 598 GQVPGLYRLRSLRALDLSHNSLTGQIP 624
           G++P    L+       ++N      P
Sbjct: 282 GEIPQGGNLQRFDVSAYANNKCLCGSP 308

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  193 bits (492), Expect = 5e-56
 Identities = 75/273 (27%), Positives = 128/273 (46%), Gaps = 14/273 (5%)

Query: 258 NNSVVGGIPTCIASLQALTHLNLSHNHLN--YEISPRLVFFEKLLLLDLS-FNDLSGPLP 314
           N + +G +         + +L+LS  +L   Y I   L     L  L +   N+L GP+P
Sbjct: 35  NRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIP 94

Query: 315 SKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYL 374
             IA+ T+   L  L ++H   SG IP  ++++K+L  L  S N L G +P  I +L  L
Sbjct: 95  PAIAKLTQ---LHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNL 151

Query: 375 QVIDLSHNMLSGSIPLNIVGCFQLL-ALIVNNNNLSGEIQPELDALDSLKILDISNNQIS 433
             I    N +SG+IP +     +L  ++ ++ N L+G+I P    L +L  +D+S N + 
Sbjct: 152 VGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLE 210

Query: 434 GEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQA 493
           G+  +     K+ + +  + N+L+  L   +    NL    +  N++ G LP  L   + 
Sbjct: 211 GDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKF 269

Query: 494 IQMMDFSTNKFMGFIPDG----NFN-FSLNFNK 521
           +  ++ S N   G IP G     F+  +   NK
Sbjct: 270 LHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNK 302

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  131 bits (332), Expect = 5e-34
 Identities = 59/294 (20%), Positives = 95/294 (32%), Gaps = 76/294 (25%)

Query: 363 EIPARIGNLTYLQ----VIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGE--IQPEL 416
           +I   +GN T L       D  +    G +       +++  L ++  NL     I   L
Sbjct: 13  QIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSL 72

Query: 417 DALDSLKILDISN-NQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSI 475
             L  L  L I   N + G IP  +A L  L  +  +  N+SG++ D +++   L     
Sbjct: 73  ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL-- 130

Query: 476 ARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVL 535
                                 DFS N   G +P              I           
Sbjct: 131 ----------------------DFSYNALSGTLP------------PSIS---------- 146

Query: 536 PRSMVIRISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGTIPKGLFQLQGL-EYLNLSFN 594
                                  L + VG+    N + G IP        L   + +S N
Sbjct: 147 ----------------------SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRN 184

Query: 595 FLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVP 648
            L G++P  +   +L  +DLS N L G       S +    ++L+ NS +  + 
Sbjct: 185 RLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG 238

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  218 bits (558), Expect = 2e-62
 Identities = 112/581 (19%), Positives = 176/581 (30%), Gaps = 70/581 (12%)

Query: 83  HVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKF 142
              +++L+   L             L+ L LS           +  LS L TL L+ N  
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88

Query: 143 VGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSF-CGEIPESLY 201
             +   A   L +L++L+      L  +    +G+    L++L+ + N     ++PE   
Sbjct: 89  QSLALGAFSGLSSLQKLVAVET-NLASLENFPIGHLK-TLKELNVAHNLIQSFKLPEYFS 146

Query: 202 YLKSLKHLDLEKNNLTGNVHDFYQSL-------LVLNLGSNRFSGTLPCFAASAMSLTVL 254
            L +L+HLDL  N +        + L       L L+L  N  +  +   A   + L  L
Sbjct: 147 NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEIRLHKL 205

Query: 255 KLDNNSVVGGIP-TCIASLQALTHLNLSHNHLNYEISPRLVFF------EKLLLLDLSFN 307
            L NN     +  TCI  L  L    L       E +              L + +    
Sbjct: 206 TLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA 265

Query: 308 DLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPAR 367
            L   L   I        +    L             +     Q L L N         +
Sbjct: 266 YLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDF--SYNFGWQHLELVNCKFGQFPTLK 323

Query: 368 IGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDI 427
           + +L  L     + N    +     +   + L L  N  +  G          SLK LD+
Sbjct: 324 LKSLKRL---TFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDL 380

Query: 428 SNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLN-DAITKWTNLKYFSIARNKLSGNLPN 486
           S N +   +     GL+ LE +DF  +NL             NL Y  I+          
Sbjct: 381 SFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG 439

Query: 487 WLFSFQAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVT 546
                 +++++  + N F        F    N                            
Sbjct: 440 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF------------------------- 474

Query: 547 AIDTNELSFNYQLFSAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG-LYR 605
                             +DLS   L    P     L  L+ LN+S N            
Sbjct: 475 ------------------LDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKC 516

Query: 606 LRSLRALDLSHNSLTGQIPGNISSLQE-LTLLNLSYNSFSG 645
           L SL+ LD S N +       +      L  LNL+ N F+ 
Sbjct: 517 LNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 557

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  212 bits (542), Expect = 4e-60
 Identities = 117/592 (19%), Positives = 193/592 (32%), Gaps = 87/592 (14%)

Query: 86  SINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGV 145
            ++L+   +          LS L  L+L+ N         F GLS L+ L         +
Sbjct: 56  VLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASL 115

Query: 146 VPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKS 205
               I  L+ L+EL +  N       P +  N + NLE LD S N         L  L  
Sbjct: 116 ENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT-NLEHLDLSSNKIQSIYCTDLRVLHQ 174

Query: 206 LK----HLDLEKNNLTGNVHDFYQ--SLLVLNLGSNRFSGTLPCFAASAMS-LTVLKLDN 258
           +      LDL  N +       ++   L  L L +N  S  +       ++ L V +L  
Sbjct: 175 MPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVL 234

Query: 259 NSVVGGI---PTCIASLQALTHLNLSHNHLNY------EISPRLVFFEKLLLLDLSFNDL 309
                         ++L+ L +L +    L Y      +I         +    L    +
Sbjct: 235 GEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTI 294

Query: 310 SGPLPS--------------KIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFL 355
                               K  Q        L  L+     G       +L SL+ L L
Sbjct: 295 ERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDL 354

Query: 356 SNNLL--IGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQ 413
           S N L   G         T L+ +DLS N +   +  N +G  QL  L   ++NL    +
Sbjct: 355 SRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSE 413

Query: 414 PE-LDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLN-DAITKWTNLK 471
                +L +L  LDIS+            GL SLE++  + N+   +   D  T+  NL 
Sbjct: 414 FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT 473

Query: 472 YFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAK 531
           +  +++ +L    P    S  ++Q+++ S N F           +               
Sbjct: 474 FLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLN--------------- 518

Query: 532 SFVLPRSMVIRISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGTIPKGLFQLQG-LEYLN 590
                       S+  +D                  S N +  +  + L      L +LN
Sbjct: 519 ------------SLQVLD-----------------YSLNHIMTSKKQELQHFPSSLAFLN 549

Query: 591 LSFNFLDG---QVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLS 639
           L+ N           L  ++  R L +    +    P   S  Q + +L+L+
Sbjct: 550 LTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATP---SDKQGMPVLSLN 598

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  211 bits (539), Expect = 1e-59
 Identities = 114/540 (21%), Positives = 187/540 (34%), Gaps = 53/540 (9%)

Query: 130 SGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSF 189
              K LDLS+N    +   +      L+ L L    E+  +  G   + S +L  L  + 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLS-HLSTLILTG 85

Query: 190 NSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQ---SLLVLNLGSNRF-SGTLPCFA 245
           N        +   L SL+ L   + NL    +       +L  LN+  N   S  LP + 
Sbjct: 86  NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF 145

Query: 246 ASAMSLTVLKLDNNSVVGGIPTCIASLQALT----HLNLSHNHLNYEISPRLVFFEKLLL 301
           ++  +L  L L +N +     T +  L  +      L+LS N +N  I P      +L  
Sbjct: 146 SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLHK 204

Query: 302 LDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQAL-------- 353
           L L  N  S  +     Q    AGL +  L    F  E  L+  +  +L+ L        
Sbjct: 205 LTLRNNFDSLNVMKTCIQGL--AGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF 262

Query: 354 -FLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEI 412
                +  + +I      LT +    L    +      +    F    L + N       
Sbjct: 263 RLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFS--YNFGWQHLELVNCKFGQFP 320

Query: 413 QPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLS--GSLNDAITKWTNL 470
                 L SLK L  ++N+       +   L SLE +D S N LS  G  + +    T+L
Sbjct: 321 T---LKLKSLKRLTFTSNKGGN--AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSL 375

Query: 471 KYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPA 530
           KY  ++ N +   + +     + ++ +DF  +          F                 
Sbjct: 376 KYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS--------------- 419

Query: 531 KSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGTIPKGLFQ-LQGLEYL 589
               L   + + IS T            L S   + ++ N         +F  L+ L +L
Sbjct: 420 ----LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 475

Query: 590 NLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVP 648
           +LS   L+   P     L SL+ L++SHN+           L  L +L+ S N       
Sbjct: 476 DLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK 535

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  190 bits (485), Expect = 3e-52
 Identities = 90/490 (18%), Positives = 159/490 (32%), Gaps = 45/490 (9%)

Query: 177 NFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNR 236
           N   + + LD SFN        S +    L+ LDL +  +       YQSL         
Sbjct: 25  NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLS-------- 76

Query: 237 FSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFF 296
                         L+ L L  N +        + L +L  L     +L    +  +   
Sbjct: 77  -------------HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHL 123

Query: 297 EKLLLLDLSFNDL-SGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFL 355
           + L  L+++ N + S  LP   +  T    L  LDLS N+        +  L  +  L L
Sbjct: 124 KTLKELNVAHNLIQSFKLPEYFSNLTN---LEHLDLSSNKIQSIYCTDLRVLHQMPLLNL 180

Query: 356 SNNLL---IGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCF---QLLALIVNNNNLS 409
           S +L    +  I         L  + L +N  S ++    +      ++  L++      
Sbjct: 181 SLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE 240

Query: 410 GEIQ-PELDALDSLKILDISNNQIS------GEIPLTLAGLKSLEIVDFSSNNLSGSLND 462
           G ++  +  AL+ L  L I   +++       +I      L ++      S  +    + 
Sbjct: 241 GNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDF 300

Query: 463 AITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDGNFNF-SLNFNK 521
           +       ++  +   K        L S + +             +   +  F  L+ N 
Sbjct: 301 SYN--FGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNG 358

Query: 522 SDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGTIPKGLF 581
                      F       + +S   + T   +F   L     +D   + L       +F
Sbjct: 359 LSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFL-GLEQLEHLDFQHSNLKQMSEFSVF 417

Query: 582 Q-LQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQI-PGNISSLQELTLLNL 638
             L+ L YL++S         G    L SL  L ++ NS      P   + L+ LT L+L
Sbjct: 418 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 477

Query: 639 SYNSFSGFVP 648
           S        P
Sbjct: 478 SQCQLEQLSP 487

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  183 bits (466), Expect = 1e-49
 Identities = 85/390 (21%), Positives = 135/390 (34%), Gaps = 22/390 (5%)

Query: 85  VSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRI-STCFGGLSGLKTLDLSYNKFV 143
           +S++L+   ++  + P   K   L  L L +N  +  +  TC  GL+GL+   L   +F 
Sbjct: 180 LSLDLSLNPMNF-IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFR 238

Query: 144 G------VVPDAIMKLRNLR--ELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGE 195
                      A+  L NL   E  L                 + N+        +    
Sbjct: 239 NEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLT-NVSSFSLVSVTIERV 297

Query: 196 IPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLK 255
              S  Y    +HL+L             +SL  L   SN+             SL  L 
Sbjct: 298 KDFS--YNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFS--EVDLPSLEFLD 353

Query: 256 LDNN--SVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPL 313
           L  N  S  G          +L +L+LS N +   +S   +  E+L  LD   ++L    
Sbjct: 354 LSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMS 412

Query: 314 PSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARI-GNLT 372
              +  +     L+ LD+SH             L SL+ L ++ N         I   L 
Sbjct: 413 EFSVFLSLRN--LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR 470

Query: 373 YLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQI 432
            L  +DLS   L    P        L  L +++NN           L+SL++LD S N I
Sbjct: 471 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 530

Query: 433 SGEIPLTLAGL-KSLEIVDFSSNNLSGSLN 461
                  L     SL  ++ + N+ + +  
Sbjct: 531 MTSKKQELQHFPSSLAFLNLTQNDFACTCE 560

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  207 bits (528), Expect = 3e-58
 Identities = 114/560 (20%), Positives = 194/560 (34%), Gaps = 68/560 (12%)

Query: 106 SFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNP 165
           S  + + LS N      S  F   S L+ LDLS  +   +   A   L +L  LIL GNP
Sbjct: 32  SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP 91

Query: 166 ELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQ 225
            +    PG     + +LE L              +  L +LK L++  N +         
Sbjct: 92  -IQSFSPGSFSGLT-SLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIH-------- 141

Query: 226 SLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALT----HLNLS 281
                       S  LP + ++  +L  + L  N +       +  L+        L++S
Sbjct: 142 ------------SCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMS 189

Query: 282 HNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIP 341
            N ++  I  +     KL  L L  N  S  +     Q    AGL +  L    F  E  
Sbjct: 190 LNPID-FIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNL--AGLHVHRLILGEFKDERN 246

Query: 342 LKITELKSLQALF--------LSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIV 393
           L+I E   ++ L         L+      +   +   L  +  + L+   +      ++ 
Sbjct: 247 LEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY--LEDVP 304

Query: 394 GCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSS 453
             F+  +L +    L    Q     L  LK L ++ N+ S  I      L SL  +D S 
Sbjct: 305 KHFKWQSLSIIRCQLK---QFPTLDLPFLKSLTLTMNKGS--ISFKKVALPSLSYLDLSR 359

Query: 454 NNLSGSLNDAIT--KWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDG 511
           N LS S   + +     +L++  ++ N     +       + +Q +DF  +         
Sbjct: 360 NALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFS 418

Query: 512 NFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVGMDLSDNL 571
            F                     L + + + IS T    +       L S   + ++ N 
Sbjct: 419 AFLS-------------------LEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNS 459

Query: 572 LHGTIPKGLFQ-LQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIPGNISS 629
                   +F     L +L+LS   L+    G    L  L+ L++SHN+L      + + 
Sbjct: 460 FKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQ 519

Query: 630 LQELTLLNLSYNSFSGFVPW 649
           L  L+ L+ S+N        
Sbjct: 520 LYSLSTLDCSFNRIETSKGI 539

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  202 bits (517), Expect = 1e-56
 Identities = 109/564 (19%), Positives = 180/564 (31%), Gaps = 78/564 (13%)

Query: 102 LCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELIL 161
               S L++L LS           + GL  L  L L+ N      P +   L +L  L+ 
Sbjct: 52  FSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA 111

Query: 162 KGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCG-EIPESLYYLKSLKHLDLEKNNLTG-- 218
               +L  +    +G     L+KL+ + N     ++P     L +L H+DL  N +    
Sbjct: 112 VET-KLASLESFPIGQLI-TLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTIT 169

Query: 219 -----NVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIP-TCIASL 272
                 + +  Q  L L++  N     +   A   + L  L L  N     I  TC+ +L
Sbjct: 170 VNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNL 228

Query: 273 QALTHLNLSHNHL----NYEISPRLVFFE----KLLLLDLSFNDLSGPLPSKIAQTTEKA 324
             L    L         N EI    +        +    L++ +       K        
Sbjct: 229 AGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLAN-- 286

Query: 325 GLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNML 384
            +  + L+           + +    Q+L +     + + P    +L +L+ + L+ N  
Sbjct: 287 -VSAMSLAGVSIKY--LEDVPKHFKWQSLSIIRC-QLKQFPT--LDLPFLKSLTLTMNKG 340

Query: 385 SGSIPLNIVGCFQLLALIVNNNNLS--GEIQPELDALDSLKILDISNNQISGEIPLTLAG 442
             SI    V    L  L ++ N LS  G         +SL+ LD+S N     +     G
Sbjct: 341 --SISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMG 397

Query: 443 LKSLEIVDFSSNNLSGSLN-DAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFST 501
           L+ L+ +DF  + L       A      L Y  I+      +         ++  +  + 
Sbjct: 398 LEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAG 457

Query: 502 NKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFS 561
           N F        F  +                           ++T +D            
Sbjct: 458 NSFKDNTLSNVFANT--------------------------TNLTFLD------------ 479

Query: 562 AVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYR-LRSLRALDLSHNSLT 620
                LS   L          L  L+ LN+S N L       Y  L SL  LD S N + 
Sbjct: 480 -----LSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE 534

Query: 621 GQIPGNISSLQELTLLNLSYNSFS 644
                     + L   NL+ NS +
Sbjct: 535 TSKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  167 bits (426), Expect = 2e-44
 Identities = 87/507 (17%), Positives = 151/507 (29%), Gaps = 53/507 (10%)

Query: 177 NFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTG-NVHDFY--QSLLVLNLG 233
           +   + + +D SFN        S      L+ LDL +  +       ++    L  L L 
Sbjct: 29  DIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILT 88

Query: 234 SNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNY-EISPR 292
            N      P   +   SL  L      +       I  L  L  LN++HN ++  ++   
Sbjct: 89  GNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAY 148

Query: 293 LVFFEKLLLLDLSFNDLSGPLPSKIAQTTE-KAGLVLLDLSHNRFSGEIPLKITELKSLQ 351
                 L+ +DLS+N +     + +    E     + LD+S N     I  +  +   L 
Sbjct: 149 FSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQGIKLH 207

Query: 352 ALFLSNNLLIGEIPAR-IGNLTYLQVIDLSHNMLSGSIPLNIVGC--------FQLLALI 402
            L L  N     I    + NL  L V  L          L I             +    
Sbjct: 208 ELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFR 267

Query: 403 VNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLND 462
           +   N   +   +   L ++  + ++   I       +      + +      L      
Sbjct: 268 LTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY--LEDVPKHFKWQSLSIIRCQLK---QF 322

Query: 463 AITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDGNFNFSLNFNKS 522
                  LK  ++  NK S +      +  ++  +D S N    F    ++         
Sbjct: 323 PTLDLPFLKSLTLTMNKGSISFKKV--ALPSLSYLDLSRNAL-SFSGCCSY--------- 370

Query: 523 DIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGTIPKGLFQ 582
                             + +S         +F   L     +D   + L        F 
Sbjct: 371 --------SDLGTNSLRHLDLSFNGAIIMSANFM-GLEELQHLDFQHSTLKRVTEFSAFL 421

Query: 583 -LQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIPGNI-SSLQELTLLNLS 639
            L+ L YL++S+        G    L SL  L ++ NS       N+ ++   LT L+LS
Sbjct: 422 SLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLS 481

Query: 640 YNSFSGFVPWKQGYQKFPGAFAGNPNL 666
                             G F     L
Sbjct: 482 KCQLEQI---------SWGVFDTLHRL 499

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  161 bits (410), Expect = 3e-42
 Identities = 80/384 (20%), Positives = 137/384 (35%), Gaps = 20/384 (5%)

Query: 85  VSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRI-STCFGGLSGLKTLDLSYNKFV 143
           +S++++   +   +  +  +   L  L L  N  +  I  TC   L+GL    L   +F 
Sbjct: 184 LSLDMSLNPID-FIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFK 242

Query: 144 GVV------PDAIMKLRNLRELILKGNP-ELGGVFPGWVGNFSMNLEKLDFSFNSFCGEI 196
                    P  +  L ++     +                 + N+  +  +  S   + 
Sbjct: 243 DERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLA-NVSAMSLAGVSI--KY 299

Query: 197 PESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKL 256
            E +      + L + +  L          L  L L  N+ S +    A    SL+ L L
Sbjct: 300 LEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALP--SLSYLDL 357

Query: 257 DNN--SVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLP 314
             N  S  G          +L HL+LS N     +S   +  E+L  LD   + L     
Sbjct: 358 SRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTE 416

Query: 315 SKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARI-GNLTY 373
                + EK  L+ LD+S+     +       L SL  L ++ N       + +  N T 
Sbjct: 417 FSAFLSLEK--LLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTN 474

Query: 374 LQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQIS 433
           L  +DLS   L            +L  L +++NNL        + L SL  LD S N+I 
Sbjct: 475 LTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE 534

Query: 434 GEIPLTLAGLKSLEIVDFSSNNLS 457
               +     KSL   + ++N+++
Sbjct: 535 TSKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  130 bits (330), Expect = 5e-32
 Identities = 64/364 (17%), Positives = 125/364 (34%), Gaps = 31/364 (8%)

Query: 300 LLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNL 359
           +        LS  +P  I  +T+      +DLS N          +    LQ L LS   
Sbjct: 14  ITYQCMDQKLSK-VPDDIPSSTKN-----IDLSFNPLKILKSYSFSNFSELQWLDLSRCE 67

Query: 360 LIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDAL 419
           +          L +L  + L+ N +    P +  G   L  L+     L+      +  L
Sbjct: 68  IETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQL 127

Query: 420 DSLKILDISNNQISG-EIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYF----S 474
            +LK L++++N I   ++P   + L +L  VD S N +     + +              
Sbjct: 128 ITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLD 187

Query: 475 IARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDGNF-------------NFSLNFNK 521
           ++ N +   + +  F    +  +    N     I                      +   
Sbjct: 188 MSLNPID-FIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERN 246

Query: 522 SDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGTIPKGLF 581
            +I      +          R++ T   ++++   + L +   M L+   +     + + 
Sbjct: 247 LEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSI--KYLEDVP 304

Query: 582 QLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYN 641
           +    + L++    L  Q P L  L  L++L L+ N  +  I     +L  L+ L+LS N
Sbjct: 305 KHFKWQSLSIIRCQLK-QFPTL-DLPFLKSLTLTMNKGS--ISFKKVALPSLSYLDLSRN 360

Query: 642 SFSG 645
           + S 
Sbjct: 361 ALSF 364

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  174 bits (443), Expect = 1e-45
 Identities = 123/654 (18%), Positives = 229/654 (35%), Gaps = 60/654 (9%)

Query: 105 LSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVV-PDAIMKLRNLRELILKG 163
           L+  E L+LS N      ++ F  L  L+ L+L        +  +A   L NLR L L  
Sbjct: 23  LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS 82

Query: 164 NPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEI--PESLYYLKSLKHLDLEKNNLTG-NV 220
           +  +  + P        +L +L   F      +        LK+L  LDL KN +    +
Sbjct: 83  SK-IYFLHPDAFQGLF-HLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYL 140

Query: 221 HDFYQ---SLLVLNLGSNRFSGTLPC-FAA-SAMSLTVLKLDNNSVVGGIPTCIASLQ-- 273
           H  +    SL  ++  SN+               +L+   L  NS+   +          
Sbjct: 141 HPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNP 200

Query: 274 ----ALTHLNLSHNHLNYEIS------------PRLVFFEKLLLLDLSFNDLSGPLPSKI 317
                L  L++S N    +I+              L+    ++     F+++        
Sbjct: 201 FRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKD-PDQNT 259

Query: 318 AQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARI-GNLTYLQV 376
                ++ +  LDLSH             LK L+ L L+ N  I +I       L  LQV
Sbjct: 260 FAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNK-INKIADEAFYGLDNLQV 318

Query: 377 IDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEI 436
           ++LS+N+L      N  G  ++  + +  N+++         L+ L+ LD+ +N ++   
Sbjct: 319 LNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT--- 375

Query: 437 PLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLF-SFQAIQ 495
             T+  + S+  +  S N L       +          ++ N+L      +       +Q
Sbjct: 376 --TIHFIPSIPDIFLSGNKLVTLPKINL----TANLIHLSENRLENLDILYFLLRVPHLQ 429

Query: 496 MMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSF 555
           ++  + N+F     D   + + +            +   L  +M+     T +  +    
Sbjct: 430 ILILNQNRFSSCSGDQTPSENPSL-----------EQLFLGENMLQLAWETELCWDVFEG 478

Query: 556 NYQLFSAVGMDLSDNLLHGTIPKGLFQ-LQGLEYLNLSFNFLDGQVPGLYRLRSLRALDL 614
              L     + L+ N L+ ++P G+F  L  L  L+L+ N L   +       +L  LD+
Sbjct: 479 LSHLQV---LYLNHNYLN-SLPPGVFSHLTALRGLSLNSNRL-TVLSHNDLPANLEILDI 533

Query: 615 SHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVPWKQGYQKFPGAFAGNPNLCLESSHGE 674
           S N L    P    SL  L + +  +        +           AG P          
Sbjct: 534 SRNQLLAPNPDVFVSLSVLDITHNKFICECELSTFINWLNHTNVTIAGPPADIYCVYPDS 593

Query: 675 CNRTSLPLVPGKTLREEMTEGPISIWAFCL-SFFVSFYLGVVALFCSARTRRYI 727
            +  SL  +  +   EE     +    F + +  ++ +L  +      R   +I
Sbjct: 594 FSGVSLFSLSTEGCDEEEVLKSLKFSLFIVCTVTLTLFLMTILTVTKFRGFCFI 647

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  172 bits (437), Expect = 5e-45
 Identities = 92/542 (16%), Positives = 169/542 (31%), Gaps = 57/542 (10%)

Query: 126 FGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKL 185
              L+  + L LS+N    V   +   L  L+ L L        +      N   NL  L
Sbjct: 20  PQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLP-NLRIL 78

Query: 186 DFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFY-----QSLLVLNLGSNRFSGT 240
           D   +      P++   L  L  L L    L+  V         ++L  L+L  N+    
Sbjct: 79  DLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSL 138

Query: 241 LPCFAASAM-SLTVLKLDNNSVVGGIPTCIASLQA--LTHLNLSHNHLNYEISPRLV-FF 296
               +   + SL  +   +N +       +  LQ   L+  +L+ N L   +S       
Sbjct: 139 YLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCM 198

Query: 297 EKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLS 356
                + L   D+SG   +          + +     N  S      +     +      
Sbjct: 199 NPFRNMVLEILDVSGNGWT----------VDITGNFSNAISKSQAFSLILAHHIMGAGFG 248

Query: 357 NNLLIGEIPARIGNL--TYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQP 414
            + +          L  + ++ +DLSH  +             L  L +  N ++     
Sbjct: 249 FHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADE 308

Query: 415 ELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFS 474
               LD+L++L++S N +         GL  +  +D   N+++   +        L+   
Sbjct: 309 AFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLD 368

Query: 475 IARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFV 534
           +  N L+      +    +I  +  S NK +           ++ +++ +          
Sbjct: 369 LRDNALTT-----IHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLE--------- 414

Query: 535 LPRSMVIRISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGTIPKGLFQ-LQGLEYLNLSF 593
                         + + L F  ++     + L+ N                LE L L  
Sbjct: 415 --------------NLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGE 460

Query: 594 NFLDGQVPG------LYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFV 647
           N L               L  L+ L L+HN L    PG  S L  L  L+L+ N  +   
Sbjct: 461 NMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLS 520

Query: 648 PW 649
             
Sbjct: 521 HN 522

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  144 bits (364), Expect = 8e-36
 Identities = 103/458 (22%), Positives = 163/458 (35%), Gaps = 47/458 (10%)

Query: 86  SINLTDTSLSGQVHPR--LCKLSFLEFLVLSSNAFTG-RISTCFGGLSGLKTLDLSYNKF 142
            + L    LS  V        L  L  L LS N      +   FG L+ LK++D S N+ 
Sbjct: 101 ELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQI 160

Query: 143 VGVVPDAIMKLR--NLRELILKGNPELGGVFPGWVGNFS----MNLEKLDFSFNSFCGEI 196
             V    +  L+   L    L  N     V   W    +    M LE LD S N +  +I
Sbjct: 161 FLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDI 220

Query: 197 P------------ESLYYLKSLKHLDLEKNNLTGNVHDFYQ-----SLLVLNLGSNRFSG 239
                         SL     +       +N+     + +      S+  L+L       
Sbjct: 221 TGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFS 280

Query: 240 TLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKL 299
                  +   L VL L  N +          L  L  LNLS+N L    S       K+
Sbjct: 281 LNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKV 340

Query: 300 LLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNL 359
             +DL  N ++  +  +  +  EK  L  LDL  N  +      I  + S+  +FLS N 
Sbjct: 341 AYIDLQKNHIAI-IQDQTFKFLEK--LQTLDLRDNALT-----TIHFIPSIPDIFLSGNK 392

Query: 360 LIGEIPARIGNLTYLQVIDLSHNMLSG-SIPLNIVGCFQLLALIVNNNNLSGEIQPELDA 418
           L+  +P        +    LS N L    I   ++    L  LI+N N  S     +  +
Sbjct: 393 LV-TLPKINLTANLI---HLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPS 448

Query: 419 -LDSLKILDISNNQISGEI-----PLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKY 472
              SL+ L +  N +              GL  L+++  + N L+       +  T L+ 
Sbjct: 449 ENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRG 508

Query: 473 FSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPD 510
            S+  N+L+  L +       ++++D S N+ +   PD
Sbjct: 509 LSLNSNRLT-VLSHNDL-PANLEILDISRNQLLAPNPD 544

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 56.0 bits (135), Expect = 4e-08
 Identities = 38/210 (18%), Positives = 70/210 (33%), Gaps = 29/210 (13%)

Query: 445 SLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKF 504
              I  +   NL+             +   ++ N +     +     + +Q+++  +   
Sbjct: 5   DGRIAFYRFCNLTQVPQVL----NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYT 60

Query: 505 MGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVG 564
              I    F    N    D+G S                 +  +  +     + LF    
Sbjct: 61  PLTIDKEAFRNLPNLRILDLGSS----------------KIYFLHPDAFQGLFHLFE--- 101

Query: 565 MDLSDNLL-HGTIPKGLFQ-LQGLEYLNLSFNFLD--GQVPGLYRLRSLRALDLSHNSLT 620
           + L    L    +  G F+ L+ L  L+LS N +      P   +L SL+++D S N + 
Sbjct: 102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF 161

Query: 621 GQIPGNISSLQELTL--LNLSYNSFSGFVP 648
                 +  LQ  TL   +L+ NS    V 
Sbjct: 162 LVCEHELEPLQGKTLSFFSLAANSLYSRVS 191

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  159 bits (405), Expect = 9e-42
 Identities = 108/551 (19%), Positives = 186/551 (33%), Gaps = 63/551 (11%)

Query: 108 LEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPEL 167
            + L LS N      S  F     L+ LDLS  +   +   A   L +L  LIL GNP +
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-I 88

Query: 168 GGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLT----GNVHDF 223
             +  G     S +L+KL     +        + +LK+LK L++  N +           
Sbjct: 89  QSLALGAFSGLS-SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147

Query: 224 YQSLLVLNLGSNRFS----GTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLN 279
             +L  L+L SN+        L       +    L L  N +    P     ++ L  L 
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LHKLT 206

Query: 280 LSHNHLNYEISPRLVF-FEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSG 338
           L +N  +  +    +     L +  L   +       +    +   GL  L +   R + 
Sbjct: 207 LRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA- 265

Query: 339 EIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQL 398
                              +  + +I      LT +    L    +      +    +Q 
Sbjct: 266 -----------------YLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQH 308

Query: 399 LALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLS- 457
           L L+         ++     L SLK L  ++N+       +   L SLE +D S N LS 
Sbjct: 309 LELVNCKFGQFPTLK-----LKSLKRLTFTSNKGGN--AFSEVDLPSLEFLDLSRNGLSF 361

Query: 458 -GSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDGNFNFS 516
            G  + +    T+LKY  ++ N +   + +     + ++ +DF  +          F   
Sbjct: 362 KGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS- 419

Query: 517 LNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGTI 576
                             L   + + IS T            L S   + ++ N      
Sbjct: 420 ------------------LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF 461

Query: 577 PKGLFQ-LQGLEYLNLSFNFLDGQVPG--LYRLRSLRALDLSHNSLTGQIPGNISSLQEL 633
              +F  L+ L +L+LS   L+ Q+       L SL+ L+++ N L     G    L  L
Sbjct: 462 LPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSL 520

Query: 634 TLLNLSYNSFS 644
             + L  N + 
Sbjct: 521 QKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  149 bits (377), Expect = 4e-38
 Identities = 91/451 (20%), Positives = 157/451 (34%), Gaps = 45/451 (9%)

Query: 102 LCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELIL 161
                 L+ L LS           +  LS L TL L+ N    +   A   L +L++L+ 
Sbjct: 48  FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107

Query: 162 KGNPELGGVFPGWVGNFSMNLEKLDFSFNSF-CGEIPESLYYLKSLKHLDLEKNNLTG-- 218
                L  +    +G+    L++L+ + N     ++PE    L +L+HLDL  N +    
Sbjct: 108 VET-NLASLENFPIGHLK-TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 165

Query: 219 -----NVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIP-TCIASL 272
                 +H      L L+L  N  +  +   A   + L  L L NN     +  TCI  L
Sbjct: 166 CTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGL 224

Query: 273 QALTHLNL------SHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGL 326
             L    L      +  +L       L     L + +     L   L   I        +
Sbjct: 225 AGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNV 284

Query: 327 VLLDLSHNRFSGEIP-------------------LKITELKSLQALFLSNNLLIGEIPAR 367
               L                                 +LKSL+ L  ++N   G   + 
Sbjct: 285 SSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSN-KGGNAFSE 343

Query: 368 IGNLTYLQVIDLSHNMLS--GSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKIL 425
           + +L  L+ +DLS N LS  G    +  G   L  L ++ N +   +      L+ L+ L
Sbjct: 344 V-DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHL 401

Query: 426 DISNNQISGEIPL-TLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNL 484
           D  ++ +           L++L  +D S  +   + N      ++L+   +A N    N 
Sbjct: 402 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF 461

Query: 485 PNWLFS-FQAIQMMDFSTNKFMGFIPDGNFN 514
              +F+  + +  +D S  +    +    FN
Sbjct: 462 LPDIFTELRNLTFLDLSQCQLE-QLSPTAFN 491

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  142 bits (361), Expect = 5e-36
 Identities = 93/414 (22%), Positives = 152/414 (36%), Gaps = 31/414 (7%)

Query: 95  SGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLK----TLDLSYNKFVGVVPDAI 150
           S ++      L+ LE L LSSN       T    L  +     +LDLS N    + P A 
Sbjct: 138 SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF 197

Query: 151 MKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGE---IPESLYYLKSLK 207
            ++  L +L L+ N +   V    +   +  LE        F  E          L+ L 
Sbjct: 198 KEI-RLHKLTLRNNFDSLNVMKTCIQGLA-GLEVHRLVLGEFRNEGNLEKFDKSALEGLC 255

Query: 208 HLDLEKNNLTGN---------VHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDN 258
           +L +E+  L            + +   ++   +L S      +  F+ +      L+L N
Sbjct: 256 NLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYN-FGWQHLELVN 313

Query: 259 NSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSG-PLPSKI 317
               G  PT    L++L  L  + N      +   V    L  LDLS N LS     S+ 
Sbjct: 314 CKF-GQFPTL--KLKSLKRLTFTSNKGGN--AFSEVDLPSLEFLDLSRNGLSFKGCCSQS 368

Query: 318 AQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARI-GNLTYLQV 376
              T    L  LDLS N     +      L+ L+ L   ++ L       +  +L  L  
Sbjct: 369 DFGTTS--LKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY 425

Query: 377 IDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPE-LDALDSLKILDISNNQISGE 435
           +D+SH     +      G   L  L +  N+      P+    L +L  LD+S  Q+   
Sbjct: 426 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL 485

Query: 436 IPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLF 489
            P     L SL++++ +SN L    +    + T+L+   +  N    + P   +
Sbjct: 486 SPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDY 539

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  138 bits (349), Expect = 1e-34
 Identities = 90/508 (17%), Positives = 163/508 (32%), Gaps = 54/508 (10%)

Query: 177 NFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNR 236
           N   + + LD SFN        S +    L+ LDL +  +               +    
Sbjct: 25  NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-------------TIEDGA 71

Query: 237 FSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFF 296
           +   L         L+ L L  N +        + L +L  L     +L    +  +   
Sbjct: 72  YQS-LS-------HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHL 123

Query: 297 EKLLLLDLSFNDL-SGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFL 355
           + L  L+++ N + S  LP   +  T    L  LDLS N+        +  L  +  L L
Sbjct: 124 KTLKELNVAHNLIQSFKLPEYFSNLTN---LEHLDLSSNKIQSIYCTDLRVLHQMPLLNL 180

Query: 356 SNNL---LIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVG---CFQLLALIVNNNNLS 409
           S +L    +  I         L  + L +N  S ++    +      ++  L++      
Sbjct: 181 SLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE 240

Query: 410 GEIQ-PELDALDSLKILDISNNQISG------EIPLTLAGLKSLEIVDFSSNNLSGSLND 462
           G ++  +  AL+ L  L I   +++       +I      L ++      S  +    + 
Sbjct: 241 GNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDF 300

Query: 463 AITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDGNFNF-SLNFNK 521
           +       ++  +   K        L S + +             +   +  F  L+ N 
Sbjct: 301 S--YNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNG 358

Query: 522 SDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGTIPKGLF 581
                      F       + +S   + T   +F   L     +D   + L       +F
Sbjct: 359 LSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFL-GLEQLEHLDFQHSNLKQMSEFSVF 417

Query: 582 Q-LQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIPGNI-SSLQELTLLNL 638
             L+ L YL++S         G    L SL  L ++ NS       +I + L+ LT L+L
Sbjct: 418 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 477

Query: 639 SYNSFSGFVPWKQGYQKFPGAFAGNPNL 666
           S                 P AF    +L
Sbjct: 478 SQCQLEQL---------SPTAFNSLSSL 496

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  112 bits (283), Expect = 3e-26
 Identities = 65/385 (16%), Positives = 121/385 (31%), Gaps = 43/385 (11%)

Query: 303 DLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIG 362
                +    +P  +  +T+      LDLS N               LQ L LS   +  
Sbjct: 13  QCMELNFYK-IPDNLPFSTKN-----LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT 66

Query: 363 EIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSL 422
                  +L++L  + L+ N +         G   L  L+    NL+      +  L +L
Sbjct: 67  IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL 126

Query: 423 KILDISNNQI-SGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLS 481
           K L++++N I S ++P   + L +LE +D SSN +       +     +   +++ + LS
Sbjct: 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLD-LS 185

Query: 482 GN----LPNWLFSFQAIQMMDFSTNKFMGFIPDGNFN-----------FSLNFNKSDIGR 526
            N    +    F    +  +    N     +                      N+ ++ +
Sbjct: 186 LNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEK 245

Query: 527 SMPAKSFVLPRSMVIRISVTAIDTNELSFNY---QLFSAVGMDLSDNLLHGTIPKGLF-- 581
              +    L    +    +  +D            L +     L    +   +    +  
Sbjct: 246 FDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF 304

Query: 582 QLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYN 641
             Q LE +N  F           +L+SL+ L  + N            L  L  L+LS N
Sbjct: 305 GWQHLELVNCKFGQFPTL-----KLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRN 357

Query: 642 SFSGFVPWKQGYQKFPGAFAGNPNL 666
             S              +  G  +L
Sbjct: 358 GLS-------FKGCCSQSDFGTTSL 375

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  148 bits (375), Expect = 2e-39
 Identities = 91/358 (25%), Positives = 152/358 (42%), Gaps = 31/358 (8%)

Query: 102 LCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELIL 161
              L+     VL   + T  ++     L  +  L ++  K   +    I  L NL  L L
Sbjct: 18  DADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVASI--QGIEYLTNLEYLNL 73

Query: 162 KGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTG--N 219
            GN ++  + P  + N    L  L    N        +L  L +L+ L L ++N++    
Sbjct: 74  NGN-QITDISP--LSNLV-KLTNLYIGTNKI--TDISALQNLTNLRELYLNEDNISDISP 127

Query: 220 VHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLN 279
           + +    +  LNLG+N     L    ++   L  L +  + V    P  IA+L  L  L+
Sbjct: 128 LANL-TKMYSLNLGANHNLSDLSPL-SNMTGLNYLTVTESKVKDVTP--IANLTDLYSLS 183

Query: 280 LSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGE 339
           L++N +  +ISP L     L       N ++   P  +A  T    L  L + +N+ +  
Sbjct: 184 LNYNQIE-DISP-LASLTSLHYFTAYVNQITDITP--VANMTR---LNSLKIGNNKITDL 236

Query: 340 IPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLL 399
            PL    L  L  L +  N  I +I A + +LT L+++++  N +S    LN     QL 
Sbjct: 237 SPLA--NLSQLTWLEIGTN-QISDINA-VKDLTKLKMLNVGSNQISDISVLN--NLSQLN 290

Query: 400 ALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLS 457
           +L +NNN L  E    +  L +L  L +S N I+   P  LA L  ++  DF++  + 
Sbjct: 291 SLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  138 bits (351), Expect = 3e-36
 Identities = 82/354 (23%), Positives = 145/354 (40%), Gaps = 31/354 (8%)

Query: 131 GLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFN 190
           G  TL         + PDA   L      +L+    +  V          ++ KL  +  
Sbjct: 1   GAATLATLPAPINQIFPDA--DLAEGIRAVLQKA-SVTDVVT--QEELE-SITKLVVAGE 54

Query: 191 SFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQ--SLLVLNLGSNRFSGTLPCFAASA 248
                  + + YL +L++L+L  N +T ++        L  L +G+N+ +  +       
Sbjct: 55  KV--ASIQGIEYLTNLEYLNLNGNQIT-DISPLSNLVKLTNLYIGTNKIT-DISALQNLT 110

Query: 249 MSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFND 308
            +L  L L+ +++    P  +A+L  +  LNL  NH   ++SP L     L  L ++ + 
Sbjct: 111 -NLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESK 166

Query: 309 LSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARI 368
           +    P  IA  T+   L  L L++N+     PL    L SL       N +    P  +
Sbjct: 167 VKDVTP--IANLTD---LYSLSLNYNQIEDISPLA--SLTSLHYFTAYVNQITDITP--V 217

Query: 369 GNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDIS 428
            N+T L  + + +N ++   PL      QL  L +  N +S      +  L  LK+L++ 
Sbjct: 218 ANMTRLNSLKIGNNKITDLSPLA--NLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVG 273

Query: 429 NNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSG 482
           +NQIS    L    L  L  +  ++N L     + I   TNL    +++N ++ 
Sbjct: 274 SNQISDISVL--NNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD 325

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  131 bits (331), Expect = 2e-33
 Identities = 70/398 (17%), Positives = 138/398 (34%), Gaps = 71/398 (17%)

Query: 251 LTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLS 310
              L      +    P   A L       L    +   ++      E +  L ++   ++
Sbjct: 2   AATLATLPAPINQIFP--DADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVA 57

Query: 311 GPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGN 370
                 I   T    L  L+L+ N+ +   PL    L  L  L++  N +     + + N
Sbjct: 58  SI--QGIEYLTN---LEYLNLNGNQITDISPLS--NLVKLTNLYIGTNKI--TDISALQN 108

Query: 371 LTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNN 430
           LT L+ + L+ + +S   PL      ++ +L +  N+   ++   L  +  L  L ++ +
Sbjct: 109 LTNLRELYLNEDNISDISPLA--NLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTES 165

Query: 431 QISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFS 490
           ++    P+  A L  L  +  + N +       +   T+L YF+   N+++ ++   + +
Sbjct: 166 KVKDVTPI--ANLTDLYSLSLNYNQIEDI--SPLASLTSLHYFTAYVNQIT-DITP-VAN 219

Query: 491 FQAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDT 550
              +  +    NK     P                                         
Sbjct: 220 MTRLNSLKIGNNKITDLSP----------------------------------------- 238

Query: 551 NELSFNYQLFSAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLR 610
             L+   QL     +++  N +  +    +  L  L+ LN+  N +   +  L  L  L 
Sbjct: 239 --LANLSQLTW---LEIGTNQI--SDINAVKDLTKLKMLNVGSNQISD-ISVLNNLSQLN 290

Query: 611 ALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVP 648
           +L L++N L  +    I  L  LT L LS N  +   P
Sbjct: 291 SLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP 328

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  124 bits (313), Expect = 4e-31
 Identities = 74/312 (23%), Positives = 127/312 (40%), Gaps = 27/312 (8%)

Query: 100 PRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLREL 159
             +  L+ LE+L L+ N  T         L  L  L +  NK       A+  L NLREL
Sbjct: 60  QGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD--ISALQNLTNLREL 115

Query: 160 ILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTG- 218
            L  +  +  + P  + N +  +  L+   N         L  +  L +L + ++ +   
Sbjct: 116 YLNED-NISDISP--LANLT-KMYSLNLGANHN-LSDLSPLSNMTGLNYLTVTESKVKDV 170

Query: 219 -NVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTH 277
             + +    L  L+L  N+    +   A S  SL       N +    P  +A++  L  
Sbjct: 171 TPIANL-TDLYSLSLNYNQIED-ISPLA-SLTSLHYFTAYVNQITDITP--VANMTRLNS 225

Query: 278 LNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFS 337
           L + +N +  ++SP L    +L  L++  N +S    + +   T+   L +L++  N+ S
Sbjct: 226 LKIGNNKIT-DLSP-LANLSQLTWLEIGTNQISDI--NAVKDLTK---LKMLNVGSNQIS 278

Query: 338 GEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQ 397
               L    L  L +LFL+NN L  E    IG LT L  + LS N ++   PL      +
Sbjct: 279 DISVLN--NLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLA--SLSK 334

Query: 398 LLALIVNNNNLS 409
           + +    N  + 
Sbjct: 335 MDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 51.8 bits (125), Expect = 4e-07
 Identities = 19/101 (18%), Positives = 44/101 (43%), Gaps = 5/101 (4%)

Query: 551 NELSFNYQLFSAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLR 610
           N++  +  L   +   L    +   + +   +L+ +  L ++   +   + G+  L +L 
Sbjct: 13  NQIFPDADLAEGIRAVLQKASVTDVVTQE--ELESITKLVVAGEKVA-SIQGIEYLTNLE 69

Query: 611 ALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVPWKQ 651
            L+L+ N +T   P  +S+L +LT L +  N  +     + 
Sbjct: 70  YLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDISALQN 108

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  151 bits (384), Expect = 3e-39
 Identities = 92/548 (16%), Positives = 177/548 (32%), Gaps = 72/548 (13%)

Query: 105 LSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGN 164
            + ++ L LS N  T          + L+ L L  ++   +  DA   L +L  L L  N
Sbjct: 25  TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN 84

Query: 165 PELGGVFPGWVGNFSMNLEKLDFSFNSF-CGEIPESLYYLKSLKHLDLEKNNLTGNVHDF 223
             L  +   W G  S +L+ L+   N +    +      L +L+ L +        +   
Sbjct: 85  H-LSSLSSSWFGPLS-SLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRI 142

Query: 224 YQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHN 283
             + L                     SL  L++   S+       + S++ + HL L  +
Sbjct: 143 DFAGLT--------------------SLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLS 182

Query: 284 HLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLK 343
              + +         +  L+L   +L+    S +      + +  L    +  +      
Sbjct: 183 ESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLT---DES 239

Query: 344 ITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIV 403
             EL  L    L  + +         + T   + D + +       L  V    +  L +
Sbjct: 240 FNELLKLLRYILELSEV------EFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHI 293

Query: 404 NNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSL--- 460
               L  ++      L+ +K + + N+++          LKSLE +D S N +       
Sbjct: 294 PQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKN 353

Query: 461 NDAITKWTNLKYFSIARNKLSGNLPNWLFSFQ---AIQMMDFSTNKFMGFIPDGNFNFSL 517
           +     W +L+   +++N L  ++            +  +D S N F             
Sbjct: 354 SACKGAWPSLQTLVLSQNHLR-SMQKTGEILLTLKNLTSLDISRNTF------------- 399

Query: 518 NFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELS--FNYQLFSAVGMDLSDNLLHGT 575
                     MP       +   + +S     +  +         +   +D+S+N L  +
Sbjct: 400 --------HPMPDSCQWPEKMRFLNLS-----STGIRVVKTCIPQTLEVLDVSNNNL-DS 445

Query: 576 IPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQELTL 635
               L +LQ    L +S N L   +P       L  + +S N L     G    L  L  
Sbjct: 446 FSLFLPRLQ---ELYISRNKLK-TLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQK 501

Query: 636 LNLSYNSF 643
           + L  N +
Sbjct: 502 IWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  134 bits (339), Expect = 2e-33
 Identities = 91/438 (20%), Positives = 161/438 (36%), Gaps = 42/438 (9%)

Query: 104 KLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGV-VPDAIMKLRNLRELILK 162
            L  LE L LS N  +   S+ FG LS LK L+L  N +  + V      L NL+ L + 
Sbjct: 72  SLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIG 131

Query: 163 GNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHD 222
                  +        + +L +L+    S      +SL  ++ + HL L  +     +  
Sbjct: 132 NVETFSEIRRIDFAGLT-SLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEI 190

Query: 223 FYQ---SLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVG----------GIPTCI 269
           F     S+  L L     +             + +K                   +   I
Sbjct: 191 FADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYI 250

Query: 270 ASLQALTHLNLSHNHLNY------EISPRLVFFEKLLL--LDLSFNDLSGPLPSKIAQTT 321
             L  +   + + N L        ++   L   E + +  L +    L   L +  +   
Sbjct: 251 LELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLE 310

Query: 322 EKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEI---PARIGNLTYLQVID 378
           +   +  + + +++           LKSL+ L LS NL++ E     A  G    LQ + 
Sbjct: 311 K---VKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLV 367

Query: 379 LSHNMLS--GSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEI 436
           LS N L         ++    L +L ++ N     +       + ++ L++S+  I    
Sbjct: 368 LSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV-- 424

Query: 437 PLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQM 496
            +     ++LE++D S+NNL             L+   I+RNKL   LP+    F  + +
Sbjct: 425 -VKTCIPQTLEVLDVSNNNLDSFSLFL----PRLQELYISRNKLK-TLPDASL-FPVLLV 477

Query: 497 MDFSTNKFMGFIPDGNFN 514
           M  S N+    +PDG F+
Sbjct: 478 MKISRNQL-KSVPDGIFD 494

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  130 bits (328), Expect = 6e-32
 Identities = 78/479 (16%), Positives = 157/479 (32%), Gaps = 48/479 (10%)

Query: 177 NFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLT---GNVHDFYQSLLVLNLG 233
             +  ++ LD SFN         L    +L+ L L+ + +    G+      SL  L+L 
Sbjct: 23  GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLS 82

Query: 234 SNRFSGTLPCFA-ASAMSLTVLKLDNNS-VVGGIPTCIASLQALTHLNLSHNHLNYEISP 291
            N  S +L         SL  L L  N     G+ +   +L  L  L + +     EI  
Sbjct: 83  DNHLS-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRR 141

Query: 292 R-LVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSL 350
                   L  L++    L       +    +   +  L L  +  +  + +    L S+
Sbjct: 142 IDFAGLTSLNELEIKALSLRNYQSQSLKSIRD---IHHLTLHLSESAFLLEIFADILSSV 198

Query: 351 QALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSG 410
           + L L +  L     + +        +       S     +     +LL  I+  + +  
Sbjct: 199 RYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVE- 257

Query: 411 EIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNL 470
                 D      + D + ++      L      ++  +      L   L+   +    +
Sbjct: 258 -----FDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKV 312

Query: 471 KYFSIARNKLSGNLPNWLFS-FQAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMP 529
           K  ++  +K+   +P       ++++ +D S N                    +      
Sbjct: 313 KRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLM-----------------VEEYLKNS 354

Query: 530 AKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVGM----DLSDNLLHGTIPKGLFQLQG 585
           A     P    + +S   + +  +    ++   +      D+S N  H  +P      + 
Sbjct: 355 ACKGAWPSLQTLVLSQNHLRS--MQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEK 411

Query: 586 LEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFS 644
           + +LNLS   +  +V      ++L  LD+S+N+L       +  LQEL    +S N   
Sbjct: 412 MRFLNLSSTGI--RVVKTCIPQTLEVLDVSNNNLD-SFSLFLPRLQEL---YISRNKLK 464

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  129 bits (327), Expect = 8e-32
 Identities = 74/393 (18%), Positives = 138/393 (35%), Gaps = 37/393 (9%)

Query: 102 LCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELIL 161
              L+ L  L + + +     S     +  +  L L  ++   ++      L ++R L L
Sbjct: 144 FAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLEL 203

Query: 162 KGNPELGGVFPGW--VGNFSMNLEKLDFSFNSF----CGEIPESLYYLKSLKHLDLEKNN 215
           +    L         V   S  ++KL F  +        E+ + L Y+  L  ++ +   
Sbjct: 204 RDTN-LARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCT 262

Query: 216 LTGNVHDFYQ--------------SLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSV 261
           L G                     ++  L++        L    +    +  + ++N+ V
Sbjct: 263 LNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKV 322

Query: 262 VGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFE---KLLLLDLSFNDLSGPLPSKIA 318
                +    L++L  L+LS N +  E             L  L LS N L   +     
Sbjct: 323 FLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRS-MQKTGE 381

Query: 319 QTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVID 378
                  L  LD+S N F   +P      + ++ L LS+  +   +         L+V+D
Sbjct: 382 ILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGI-RVVKT--CIPQTLEVLD 437

Query: 379 LSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPL 438
           +S+N L  S  L +    +L  L ++ N L     P+      L ++ IS NQ+      
Sbjct: 438 VSNNNLD-SFSLFLP---RLQELYISRNKLK--TLPDASLFPVLLVMKISRNQLKSVPDG 491

Query: 439 TLAGLKSLEIVDFSSNNLSGSLNDA--ITKWTN 469
               L SL+ +   +N    S      +++W N
Sbjct: 492 IFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLN 524

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 60.5 bits (147), Expect = 1e-09
 Identities = 33/237 (13%), Positives = 72/237 (30%), Gaps = 36/237 (15%)

Query: 418 ALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIAR 477
           + D+  + D  +   +  IP  L    +++ +D S N ++   +  +    NL+   +  
Sbjct: 3   SCDASGVCDGRSRSFT-SIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKS 59

Query: 478 NKLSGNLPNWLFSF-QAIQMMDFSTNKFMGFIPDGNFNF-----SLNFNKSDIGRSMPAK 531
           ++++  +    F    +++ +D S N     +    F        LN   +         
Sbjct: 60  SRIN-TIEGDAFYSLGSLEHLDLSDNHL-SSLSSSWFGPLSSLKYLNLMGNPYQTLGVTS 117

Query: 532 SFVLPRSMVIRISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGTIPKGLFQ-LQGLEYLN 590
            F                         L +   + + +      I +  F  L  L  L 
Sbjct: 118 LF-----------------------PNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELE 154

Query: 591 LSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGF 646
           +    L       L  +R +  L L  +     +      L  +  L L   + + F
Sbjct: 155 IKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARF 211

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  144 bits (365), Expect = 4e-37
 Identities = 64/388 (16%), Positives = 118/388 (30%), Gaps = 24/388 (6%)

Query: 105 LSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGN 164
            +  +   ++ ++    +++       +K LDLS N    +    +     L  L L  N
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68

Query: 165 PELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFY 224
             L       + + S  L  LD + N       + L    S++ L    NN++       
Sbjct: 69  -VLYETLD--LESLS-TLRTLDLNNNYV-----QELLVGPSIETLHAANNNISRVSCSRG 119

Query: 225 QSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVG-GIPTCIASLQALTHLNLSHN 283
           Q    + L +N+ +            +  L L  N +         AS   L HLNL +N
Sbjct: 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179

Query: 284 HLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLK 343
            +        V F KL  LDLS N L+  +  +        G+  + L +N+    I   
Sbjct: 180 FI--YDVKGQVVFAKLKTLDLSSNKLAF-MGPEFQSAA---GVTWISLRNNKLV-LIEKA 232

Query: 344 ITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIV 403
           +   ++L+   L  N        R       +V  ++   +      N   C        
Sbjct: 233 LRFSQNLEHFDLRGNGFHC-GTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHY 291

Query: 404 NNNNLSGEIQPELDALDSL-----KILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSG 458
                     P  D L +L      +L    ++    +            +D        
Sbjct: 292 GAYCCEDLPAPFADRLIALKRKEHALLSGQGSETE-RLECERENQARQREIDALKEQYRT 350

Query: 459 SLNDAITKWTNLKYFSIARNKLSGNLPN 486
            ++    +          +  L   + N
Sbjct: 351 VIDQVTLRKQAKITLEQKKKALDEQVSN 378

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  140 bits (355), Expect = 9e-36
 Identities = 60/423 (14%), Positives = 128/423 (30%), Gaps = 42/423 (9%)

Query: 225 QSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNH 284
               +  +  +     L     SA ++  L L  N +       +A    L  LNLS N 
Sbjct: 10  NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV 69

Query: 285 LNYEISPRLVFFEKLLLLDLSFNDLS--GPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPL 342
           L    +  L     L  LDL+ N +      PS          +  L  ++N  S  +  
Sbjct: 70  LYE--TLDLESLSTLRTLDLNNNYVQELLVGPS----------IETLHAANNNIS-RVSC 116

Query: 343 KITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSG-SIPLNIVGCFQLLAL 401
                +  + ++L+NN +        G  + +Q +DL  N +   +          L  L
Sbjct: 117 SR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHL 174

Query: 402 IVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLN 461
            +  N +  +++ ++     LK LD+S+N+++  +         +  +   +N L   + 
Sbjct: 175 NLQYNFIY-DVKGQVV-FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIE 230

Query: 462 DAITKWTNLKYFSIARNKLS-GNLPNWLFSFQAIQMMDFSTNKFMGFIPDGNFNFSLNFN 520
            A+    NL++F +  N    G L ++    Q +Q +   T K +    +         +
Sbjct: 231 KALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGH 290

Query: 521 KSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGTIPKGL 580
                                          +     +      +    +     +    
Sbjct: 291 YGAY-----------------CCEDLPAPFADRLIALKRKEHALLSGQGSET-ERLECER 332

Query: 581 FQLQGLEYLNLSFNFLDGQVPGLYR-LRSLRALDLSHNSLTGQIPGNISSLQELTLLNLS 639
                   ++         +  +    ++   L+    +L  Q+     +  EL      
Sbjct: 333 ENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQ 392

Query: 640 YNS 642
              
Sbjct: 393 AVG 395

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  133 bits (336), Expect = 3e-33
 Identities = 59/388 (15%), Positives = 122/388 (31%), Gaps = 24/388 (6%)

Query: 122 ISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMN 181
           I       +  K   ++ +     +        N++EL L GN  L  +    +  F+  
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGN-PLSQISAADLAPFT-K 59

Query: 182 LEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTL 241
           LE L+ S N         L  L +L+ LDL  N +         S+  L+  +N  S  +
Sbjct: 60  LELLNLSSNVL--YETLDLESLSTLRTLDLNNNYVQ--ELLVGPSIETLHAANNNIS-RV 114

Query: 242 PCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVF--FEKL 299
               +       + L NN +             + +L+L  N ++  ++   +    + L
Sbjct: 115 S--CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID-TVNFAELAASSDTL 171

Query: 300 LLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNL 359
             L+L +N +   +  ++        L  LDLS N+ +  +  +      +  + L NN 
Sbjct: 172 EHLNLQYNFIYD-VKGQVVFAK----LKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNK 225

Query: 360 LIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDAL 419
           L+  I   +     L+  DL  N        +     Q +   V    +        +  
Sbjct: 226 LV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRV-QTVAKQTVKKLTGQNEEEC 283

Query: 420 DSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWT----NLKYFSI 475
               +                  L +L+  + +  +  GS  + +          +    
Sbjct: 284 TVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDA 343

Query: 476 ARNKLSGNLPNWLFSFQAIQMMDFSTNK 503
            + +    +       QA   ++     
Sbjct: 344 LKEQYRTVIDQVTLRKQAKITLEQKKKA 371

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 97.6 bits (243), Expect = 1e-21
 Identities = 51/320 (15%), Positives = 106/320 (33%), Gaps = 35/320 (10%)

Query: 326 LVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLS 385
             +  ++ +     +        +++ L LS N L     A +   T L++++LS N+L 
Sbjct: 12  YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLY 71

Query: 386 GSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKS 445
            ++ L       L  L +NNN +      EL    S++ L  +NN IS        G K+
Sbjct: 72  ETLDLE--SLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNISRVSCSRGQGKKN 124

Query: 446 LEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFS-FQAIQMMDFSTNKF 504
           +     ++N ++   +      + ++Y  +  N++       L +    ++ ++   N  
Sbjct: 125 I---YLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI 181

Query: 505 MGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVG 564
              +        L                       + +S   +      F         
Sbjct: 182 YD-VKGQVVFAKLK---------------------TLDLSSNKLAFMGPEFQ-SAAGVTW 218

Query: 565 MDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIP 624
           + L +N L   I K L   Q LE+ +L  N         +  ++ R   ++  ++     
Sbjct: 219 ISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTG 277

Query: 625 GNISSLQELTLLNLSYNSFS 644
            N       TL +       
Sbjct: 278 QNEEECTVPTLGHYGAYCCE 297

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 92.6 bits (230), Expect = 6e-20
 Identities = 47/278 (16%), Positives = 98/278 (35%), Gaps = 34/278 (12%)

Query: 368 IGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDI 427
             N    ++  ++ + L  ++       + +  L ++ N LS     +L     L++L++
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 428 SNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNW 487
           S+N +  E    L  L +L  +D ++N +       +    +++    A N +S  +   
Sbjct: 66  SSNVLY-ETL-DLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS-RVS-- 115

Query: 488 LFSFQAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTA 547
               Q  + +  + NK    + D +                        R   + + +  
Sbjct: 116 CSRGQGKKNIYLANNKITM-LRDLDEGC-------------------RSRVQYLDLKLNE 155

Query: 548 IDT-NELSFNYQLFSAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRL 606
           IDT N         +   ++L  N ++  +   +     L+ L+LS N L    P     
Sbjct: 156 IDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVV-FAKLKTLDLSSNKLAFMGPEFQSA 213

Query: 607 RSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFS 644
             +  + L +N L   I   +   Q L   +L  N F 
Sbjct: 214 AGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 48.3 bits (115), Expect = 7e-06
 Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 1/64 (1%)

Query: 583 LQGLEYLNLSFNFLDGQVPGLYR-LRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYN 641
               +   ++ + L   +  L +   +++ LDLS N L+     +++   +L LLNLS N
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68

Query: 642 SFSG 645
               
Sbjct: 69  VLYE 72

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  140 bits (354), Expect = 1e-35
 Identities = 95/425 (22%), Positives = 166/425 (39%), Gaps = 36/425 (8%)

Query: 86  SINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGV 145
            IN ++  L+      L  L+ L  +++++N            L+ L  L L  N+   +
Sbjct: 72  QINFSNNQLTD--ITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDI 127

Query: 146 VPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKS 205
             D +  L NL  L L  N  +  +    +   + +L++L F          + L  L +
Sbjct: 128 --DPLKNLTNLNRLELSSN-TISDISA--LSGLT-SLQQLSFGNQV---TDLKPLANLTT 178

Query: 206 LKHLDLEKNNLTG-NVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGG 264
           L+ LD+  N ++  +V     +L  L   +N+ S  +        +L  L L+ N +   
Sbjct: 179 LERLDISSNKVSDISVLAKLTNLESLIATNNQISD-ITPLGILT-NLDELSLNGNQLKD- 235

Query: 265 IPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKA 324
           I T +ASL  LT L+L++N ++  ++P L    KL  L L  N +S   P  +A  T   
Sbjct: 236 IGT-LASLTNLTDLDLANNQIS-NLAP-LSGLTKLTELKLGANQISNISP--LAGLTA-- 288

Query: 325 GLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNML 384
            L  L+L+ N+     P  I+ LK+L  L L  N +    P  + +LT LQ +   +N +
Sbjct: 289 -LTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKV 343

Query: 385 SGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLK 444
           S    L       +  L   +N +S      L  L  +  L +++   +       A + 
Sbjct: 344 SDVSSLA--NLTNINWLSAGHNQISDL--TPLANLTRITQLGLNDQAWTNAPVNYKANVS 399

Query: 445 SLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKF 504
               V   +  L       I+   +     I  N  S       ++F     +   T  F
Sbjct: 400 IPNTVKNVTGAL--IAPATISDGGSYTEPDITWNLPSY-TNEVSYTFSQPVTIGKGTTTF 456

Query: 505 MGFIP 509
            G + 
Sbjct: 457 SGTVT 461

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  140 bits (354), Expect = 1e-35
 Identities = 93/468 (19%), Positives = 166/468 (35%), Gaps = 66/468 (14%)

Query: 181 NLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTG--NVHDFYQSLLVLNLGSNRFS 238
              K      +    + ++   L  +  L  ++  +     V     +L  +N  +N+ +
Sbjct: 25  EKMKTVLGKTNVTDTVSQTD--LDQVTTLQADRLGIKSIDGVEYL-NNLTQINFSNNQLT 81

Query: 239 GTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEK 298
             +         L  + ++NN +    P  +A+L  LT L L +N +  +I P L     
Sbjct: 82  D-ITPLKNLT-KLVDILMNNNQIADITP--LANLTNLTGLTLFNNQIT-DIDP-LKNLTN 135

Query: 299 LLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNN 358
           L  L+LS N +S    S ++  T    L  L    N+ +   PL    L +L+ L +S+N
Sbjct: 136 LNRLELSSNTISDI--SALSGLTS---LQQLSFG-NQVTDLKPLA--NLTTLERLDISSN 187

Query: 359 LLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDA 418
             + +I   +  LT L+ +  ++N +S   PL       L  L +N N L       L +
Sbjct: 188 K-VSDISV-LAKLTNLESLIATNNQISDITPLG--ILTNLDELSLNGNQLKDI--GTLAS 241

Query: 419 LDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARN 478
           L +L  LD++NNQIS   PL  +GL  L  +   +N +S      +   T L    +  N
Sbjct: 242 LTNLTDLDLANNQISNLAPL--SGLTKLTELKLGANQISNI--SPLAGLTALTNLELNEN 297

Query: 479 KLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDGNF----NFSLNFNKSDIGRSMPAKSFV 534
           +L    P  + + + +  +    N      P  +           NK             
Sbjct: 298 QLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNK------------- 342

Query: 535 LPRSMVIRISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFN 594
                   +S    D + L+    +     +    N +    P  L  L  +  L L+  
Sbjct: 343 --------VS----DVSSLANLTNINW---LSAGHNQISDLTP--LANLTRITQLGLNDQ 385

Query: 595 FLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNS 642
                        S+     +        P  IS     T  ++++N 
Sbjct: 386 AWTNAPVNYKANVSIPNTVKNVTGAL-IAPATISDGGSYTEPDITWNL 432

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  139 bits (352), Expect = 2e-35
 Identities = 89/407 (21%), Positives = 159/407 (39%), Gaps = 37/407 (9%)

Query: 83  HVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKF 142
             +   L  T+++  V      L  +  L                 L+ L  ++ S N+ 
Sbjct: 25  EKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIK--SIDGVEYLNNLTQINFSNNQL 80

Query: 143 VGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYY 202
             + P  +  L  L ++++  N ++  + P  + N + NL  L    N       + L  
Sbjct: 81  TDITP--LKNLTKLVDILMNNN-QIADITP--LANLT-NLTGLTLFNNQI--TDIDPLKN 132

Query: 203 LKSLKHLDLEKNNLTG-NVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSV 261
           L +L  L+L  N ++  +      SL  L+   N+ +   P   A+  +L  L + +N V
Sbjct: 133 LTNLNRLELSSNTISDISALSGLTSLQQLSF-GNQVTDLKP--LANLTTLERLDISSNKV 189

Query: 262 VGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTT 321
                + +A L  L  L  ++N ++ +I+P L     L  L L+ N L       +A  T
Sbjct: 190 SD--ISVLAKLTNLESLIATNNQIS-DITP-LGILTNLDELSLNGNQLKD--IGTLASLT 243

Query: 322 EKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSH 381
               L  LDL++N+ S   PL    L  L  L L  N +    P  +  LT L  ++L+ 
Sbjct: 244 N---LTDLDLANNQISNLAPLS--GLTKLTELKLGANQISNISP--LAGLTALTNLELNE 296

Query: 382 NMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLA 441
           N L    P++      L  L +  NN+S      + +L  L+ L   NN++S     +LA
Sbjct: 297 NQLEDISPIS--NLKNLTYLTLYFNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLA 350

Query: 442 GLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWL 488
            L ++  +    N +S      +   T +    +     +    N+ 
Sbjct: 351 NLTNINWLSAGHNQISDL--TPLANLTRITQLGLNDQAWTNAPVNYK 395

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  137 bits (347), Expect = 1e-34
 Identities = 98/523 (18%), Positives = 181/523 (34%), Gaps = 85/523 (16%)

Query: 128 GLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDF 187
            L+      L        V      L  +  L       +  +    V   + NL +++F
Sbjct: 22  ALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRL-GIKSIDG--VEYLN-NLTQINF 75

Query: 188 SFNSFCGEIPESLYYLKSLKHLDLEKNNLTG--NVHDFYQSLLVLNLGSNRFSGTLPCFA 245
           S N      P  L  L  L  + +  N +     + +   +L  L L +N+ +  +    
Sbjct: 76  SNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANL-TNLTGLTLFNNQITD-IDPLK 131

Query: 246 ASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLS 305
               +L  L+L +N++     + ++ L +L  L+  +     ++ P L     L  LD+S
Sbjct: 132 NLT-NLNRLELSSNTISD--ISALSGLTSLQQLSFGNQVT--DLKP-LANLTTLERLDIS 185

Query: 306 FNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIP 365
            N +S    S +A+ T    L  L  ++N+ S   PL    L +L  L L+ N L  +I 
Sbjct: 186 SNKVSD--ISVLAKLTN---LESLIATNNQISDITPLG--ILTNLDELSLNGNQLK-DIG 237

Query: 366 ARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKIL 425
             + +LT L  +DL++N +S   PL+  G  +L  L +  N +S      L  L +L  L
Sbjct: 238 T-LASLTNLTDLDLANNQISNLAPLS--GLTKLTELKLGANQISNI--SPLAGLTALTNL 292

Query: 426 DISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLP 485
           +++ NQ+    P  ++ LK+L  +    NN+S      ++  T L+      NK+S    
Sbjct: 293 ELNENQLEDISP--ISNLKNLTYLTLYFNNISDI--SPVSSLTKLQRLFFYNNKVSD--V 346

Query: 486 NWLFSFQAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISV 545
           + L +   I  +    N+     P  N                                 
Sbjct: 347 SSLANLTNINWLSAGHNQISDLTPLANLT------------------------------- 375

Query: 546 TAIDTNELSFNYQLFSAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYR 605
                       ++     + L+D       P        +     +          +  
Sbjct: 376 ------------RITQ---LGLNDQAWT-NAPVNYKANVSIPNTVKNVTGALIAPATISD 419

Query: 606 LRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVP 648
             S    D++ N  +        +  +   +     +FSG V 
Sbjct: 420 GGSYTEPDITWNLPS-YTNEVSYTFSQPVTIGKGTTTFSGTVT 461

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  111 bits (280), Expect = 4e-26
 Identities = 85/381 (22%), Positives = 144/381 (37%), Gaps = 58/381 (15%)

Query: 275 LTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHN 334
           L    ++ +    +I        + +   L   +++  +       T+   +  L     
Sbjct: 3   LGSATITQDTPINQIFT-DTALAEKMKTVLGKTNVTDTVS-----QTDLDQVTTLQADRL 56

Query: 335 RFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVG 394
                    +  L +L  +  SNN L    P  + NLT L  I +++N ++   PL    
Sbjct: 57  GIK--SIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLA--N 110

Query: 395 CFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSN 454
              L  L + NN ++      L  L +L  L++S+N IS    L  +GL SL+ + F  N
Sbjct: 111 LTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTISDISAL--SGLTSLQQLSFG-N 165

Query: 455 NLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDGNF- 513
            ++      +   T L+   I+ NK+S    + L     ++ +  + N+     P G   
Sbjct: 166 QVTDLKP--LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITPLGILT 221

Query: 514 ---NFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVGMDLSDN 570
                SLN N+                       +  I T  L+    L     +DL++N
Sbjct: 222 NLDELSLNGNQ-----------------------LKDIGT--LASLTNLTD---LDLANN 253

Query: 571 LLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNISSL 630
            +    P  L  L  L  L L  N +   +  L  L +L  L+L+ N L    P  IS+L
Sbjct: 254 QISNLAP--LSGLTKLTELKLGANQISN-ISPLAGLTALTNLELNENQLEDISP--ISNL 308

Query: 631 QELTLLNLSYNSFSGFVPWKQ 651
           + LT L L +N+ S   P   
Sbjct: 309 KNLTYLTLYFNNISDISPVSS 329

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  137 bits (347), Expect = 3e-35
 Identities = 70/337 (20%), Positives = 132/337 (39%), Gaps = 36/337 (10%)

Query: 105 LSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGN 164
           L+  + +   ++      +        ++ L+L+  +   +   A      +++L +  N
Sbjct: 44  LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN 103

Query: 165 PELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLT---GNVH 221
             +  + P    N    L  L    N          +    L  L +  NNL     +  
Sbjct: 104 -AIRYLPPHVFQNVP-LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTF 161

Query: 222 DFYQSLLVLNLGSNRFS----GTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTH 277
               SL  L L SNR +      +P       SL    +  N +     + +A   A+  
Sbjct: 162 QATTSLQNLQLSSNRLTHVDLSLIP-------SLFHANVSYNLL-----STLAIPIAVEE 209

Query: 278 LNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFS 337
           L+ SHN +N  +   +    +L +L L  N+L     +  A      GLV +DLS+N   
Sbjct: 210 LDASHNSIN-VVRGPV--NVELTILKLQHNNL-----TDTAWLLNYPGLVEVDLSYNELE 261

Query: 338 GEIPLKI-TELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCF 396
            +I      +++ L+ L++SNN  +  +      +  L+V+DLSHN L   +  N     
Sbjct: 262 -KIMYHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFD 318

Query: 397 QLLALIVNNNNLSGEIQPELDALDSLKILDISNNQIS 433
           +L  L +++N++   ++       +LK L +S+N   
Sbjct: 319 RLENLYLDHNSIV-TLKL--STHHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  129 bits (327), Expect = 1e-32
 Identities = 81/397 (20%), Positives = 143/397 (36%), Gaps = 57/397 (14%)

Query: 99  HPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRE 158
               C    +   + + + + G        L+  K +    +    +    +   R +  
Sbjct: 17  LQYDCVFYDVHIDMQTQDVYFG---FEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVEL 73

Query: 159 LILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLT- 217
           L L                    +E++D            +  Y  +++ L +  N +  
Sbjct: 74  LNLNDL----------------QIEEID----------TYAFAYAHTIQKLYMGFNAIRY 107

Query: 218 --GNVHDFYQSLLVLNLGSNRFSGTLPCFA-ASAMSLTVLKLDNNSVVGGIPTCIASLQA 274
              +V      L VL L  N  S +LP     +   LT L + NN++         +  +
Sbjct: 108 LPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTS 166

Query: 275 LTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHN 334
           L +L LS N L   +   L     L   ++S+N LS  L   IA       +  LD SHN
Sbjct: 167 LQNLQLSSNRLT-HVDLSL--IPSLFHANVSYNLLST-LAIPIA-------VEELDASHN 215

Query: 335 RFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNI-V 393
             +  +   +     L  L L +N L  +    + N   L  +DLS+N L   I  +  V
Sbjct: 216 SIN-VVRGPV--NVELTILKLQHNNLT-DTAW-LLNYPGLVEVDLSYNELE-KIMYHPFV 269

Query: 394 GCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSS 453
              +L  L ++NN L   +      + +LK+LD+S+N +   +         LE +    
Sbjct: 270 KMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDH 327

Query: 454 NNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFS 490
           N++  +L  +      LK  +++ N    N    LF 
Sbjct: 328 NSIV-TLKLST--HHTLKNLTLSHNDWDCNSLRALFR 361

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  105 bits (263), Expect = 2e-24
 Identities = 70/363 (19%), Positives = 144/363 (39%), Gaps = 30/363 (8%)

Query: 265 IPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKA 324
           I + +        +++     +       +      ++    + +   LP+ +  +  + 
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRK-LPAALLDSFRQ- 70

Query: 325 GLVLLDLSHNRFSGEIPLKI-TELKSLQALFLSNNLLIGEIPARI-GNLTYLQVIDLSHN 382
            + LL+L+  +   EI         ++Q L++  N  I  +P  +  N+  L V+ L  N
Sbjct: 71  -VELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLTVLVLERN 127

Query: 383 MLSGSIPLNI-VGCFQLLALIVNNNNLSGEIQPE-LDALDSLKILDISNNQISGEIPLTL 440
            LS S+P  I     +L  L ++NNNL   I+ +   A  SL+ L +S+N+++    + L
Sbjct: 128 DLS-SLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTH---VDL 182

Query: 441 AGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFS 500
           + + SL   + S N LS      +     ++    + N ++  +   +     + ++   
Sbjct: 183 SLIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSIN-VVRGPVN--VELTILKLQ 234

Query: 501 TNKFMGFIPDGNFNF--SLNFNKSDIGRSMPAKSFV-LPRSMVIRISVTAIDTNELSFNY 557
            N         N+     ++ + +++   +    FV + R   + IS   +    L    
Sbjct: 235 HNNLTDTAWLLNYPGLVEVDLSYNEL-EKIMYHPFVKMQRLERLYISNNRLVALNLYGQ- 292

Query: 558 QLFSAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHN 617
            + +   +DLS N L   + +   Q   LE L L  N +   +  L    +L+ L LSHN
Sbjct: 293 PIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSI-VTLK-LSTHHTLKNLTLSHN 349

Query: 618 SLT 620
              
Sbjct: 350 DWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 88.9 bits (221), Expect = 4e-19
 Identities = 52/348 (14%), Positives = 104/348 (29%), Gaps = 78/348 (22%)

Query: 326 LVLLDLSHNRFSGEIPLKITE--LKSLQALFLSNNLLIGEIPARI-GNLTYLQVIDLSHN 382
            V  D+  +  + ++     +  L + + +   N+  + ++PA +  +   +++++L+  
Sbjct: 21  CVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNST-MRKLPAALLDSFRQVELLNLNDL 79

Query: 383 MLSGSIPLNI-VGCFQLLALIVNNNNLSGEIQPE-LDALDSLKILDISNNQISGEIPLTL 440
            +   I          +  L +  N +   + P     +  L +L +  N +S       
Sbjct: 80  QIE-EIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPRGIF 137

Query: 441 AGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFS 500
                L  +  S+NNL    +D     T+L+   ++ N+L+                   
Sbjct: 138 HNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH------------------ 179

Query: 501 TNKFMGFIPDGNFN--FSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQ 558
                  +        F  N                             +  N LS    
Sbjct: 180 -------VDLSLIPSLFHAN-----------------------------VSYNLLSTLAI 203

Query: 559 LFSAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNS 618
             +   +D S N ++  +   +     L  L L  N L      L     L  +DLS+N 
Sbjct: 204 PIAVEELDASHNSIN-VVRGPVNV--ELTILKLQHNNLT-DTAWLLNYPGLVEVDLSYNE 259

Query: 619 LTGQIPGNISSLQELTLLNLSYNSFSGFVPWKQGYQKFPGAFAGNPNL 666
           L   +      +Q L  L +S N                      P L
Sbjct: 260 LEKIMYHPFVKMQRLERLYISNNRLV----------ALNLYGQPIPTL 297

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 70.1 bits (172), Expect = 6e-13
 Identities = 48/288 (16%), Positives = 94/288 (32%), Gaps = 57/288 (19%)

Query: 387 SIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSL 446
            I  N+        + ++          E   L++ KI+   N+ +       L   + +
Sbjct: 12  CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQV 71

Query: 447 EIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFS-FQAIQMMDFSTNKFM 505
           E+++ +   +      A      ++   +  N +   LP  +F     + ++    N   
Sbjct: 72  ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLS 130

Query: 506 GFIPDGNFN-------FSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQ 558
             +P G F+        S++ N                        +  I+ +       
Sbjct: 131 -SLPRGIFHNTPKLTTLSMSNNN-----------------------LERIEDDTFQATTS 166

Query: 559 LFSAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNS 618
           L +   + LS N L   +   L     L + N+S+N L      L    ++  LD SHNS
Sbjct: 167 LQN---LQLSSNRLT-HVDLSLI--PSLFHANVSYNLLS----TLAIPIAVEELDASHNS 216

Query: 619 LTGQIPGNISSLQELTLLNLSYNSFSGFVPWKQGYQKFPGAFAGNPNL 666
           +   + G +    ELT+L L +N+ +                   P L
Sbjct: 217 IN-VVRGPV--NVELTILKLQHNNLTD-----------TAWLLNYPGL 250

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 66.2 bits (162), Expect = 1e-11
 Identities = 32/157 (20%), Positives = 56/157 (35%), Gaps = 12/157 (7%)

Query: 105 LSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGN 164
              L  L L  N  T   +       GL  +DLSYN+   ++    +K++ L  L +  N
Sbjct: 225 NVELTILKLQHNNLT-DTAW-LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN 282

Query: 165 P--ELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHD 222
               L              L+ LD S N     +  +      L++L L+ N++      
Sbjct: 283 RLVALNLYGQPIP-----TLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLKLS 336

Query: 223 FYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNN 259
            + +L  L L  N +        A   ++    +D+ 
Sbjct: 337 THHTLKNLTLSHNDWDCN--SLRALFRNVARPAVDDA 371

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  131 bits (331), Expect = 8e-34
 Identities = 58/330 (17%), Positives = 111/330 (33%), Gaps = 23/330 (6%)

Query: 105 LSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGN 164
            +  +   ++ ++    +++       +K LDLS N    +    +     L  L L  N
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68

Query: 165 PELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFY 224
             L       + + S  L  LD + N       + L    S++ L    NN++       
Sbjct: 69  -VLYETLD--LESLS-TLRTLDLNNNYV-----QELLVGPSIETLHAANNNISRVSCSRG 119

Query: 225 QSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVG-GIPTCIASLQALTHLNLSHN 283
           Q    + L +N+ +            +  L L  N +         AS   L HLNL +N
Sbjct: 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179

Query: 284 HLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLK 343
            +  ++    V F KL  LDLS N L+  +  +        G+  + L +N+    I   
Sbjct: 180 FIY-DVKG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAA---GVTWISLRNNKLV-LIEKA 232

Query: 344 ITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIV 403
           +   ++L+   L  N        R       +V  ++   +      N   C        
Sbjct: 233 LRFSQNLEHFDLRGNGFH-CGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHY 291

Query: 404 NNNNLSGEIQPELDALDSLKILDISNNQIS 433
                      +L A  + +++ + ++   
Sbjct: 292 GAYCCE-----DLPAPFADRLIALGHHHHH 316

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  121 bits (305), Expect = 2e-30
 Identities = 57/333 (17%), Positives = 110/333 (33%), Gaps = 20/333 (6%)

Query: 122 ISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMN 181
           I       +  K   ++ +     +        N++EL L GN  L  +    +  F+  
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGN-PLSQISAADLAPFT-K 59

Query: 182 LEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTL 241
           LE L+ S N    E  + L  L +L+ LDL  N +   +     S+  L+  +N  S  +
Sbjct: 60  LELLNLSSNVL-YETLD-LESLSTLRTLDLNNNYVQ-ELLVG-PSIETLHAANNNIS-RV 114

Query: 242 PCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVF--FEKL 299
               +       + L NN +             + +L+L  N ++  ++   +    + L
Sbjct: 115 S--CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID-TVNFAELAASSDTL 171

Query: 300 LLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNL 359
             L+L +N +   +  ++        L  LDLS N+ +  +  +      +  + L NN 
Sbjct: 172 EHLNLQYNFIYD-VKGQVVFAK----LKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNK 225

Query: 360 LIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDAL 419
           L+  I   +     L+  DL  N        +     Q +  +          Q E +  
Sbjct: 226 LV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEE-C 283

Query: 420 DSLKILDISNNQISGEIPLTLAGLKSLEIVDFS 452
               +                  L +L      
Sbjct: 284 TVPTLGHYGAYCCEDLPAPFADRLIALGHHHHH 316

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  102 bits (256), Expect = 5e-24
 Identities = 52/260 (20%), Positives = 96/260 (36%), Gaps = 30/260 (11%)

Query: 264 GIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEK 323
            I     +        ++ + L   ++        +  LDLS N LS    + +A  T+ 
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTK- 59

Query: 324 AGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLL------------------IGEIP 365
             L LL+LS N    E    +  L +L+ L L+NN +                  I  + 
Sbjct: 60  --LELLNLSSNVLY-ETL-DLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVS 115

Query: 366 ARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSG-EIQPELDALDSLKI 424
              G     + I L++N ++    L+     ++  L +  N +          + D+L+ 
Sbjct: 116 CSRGQG--KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEH 173

Query: 425 LDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNL 484
           L++  N I  ++         L+ +D SSN L+  +         + + S+  NKL   +
Sbjct: 174 LNLQYNFIY-DVK-GQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LI 229

Query: 485 PNWLFSFQAIQMMDFSTNKF 504
              L   Q ++  D   N F
Sbjct: 230 EKALRFSQNLEHFDLRGNGF 249

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 95.1 bits (237), Expect = 2e-21
 Identities = 47/278 (16%), Positives = 98/278 (35%), Gaps = 34/278 (12%)

Query: 368 IGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDI 427
             N    ++  ++ + L  ++       + +  L ++ N LS     +L     L++L++
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 428 SNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNW 487
           S+N +  E    L  L +L  +D ++N +       +    +++    A N +S  +   
Sbjct: 66  SSNVLY-ETL-DLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS-RVS-- 115

Query: 488 LFSFQAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTA 547
               Q  + +  + NK    + D +                        R   + + +  
Sbjct: 116 CSRGQGKKNIYLANNKI-TMLRDLDEGC-------------------RSRVQYLDLKLNE 155

Query: 548 IDT-NELSFNYQLFSAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRL 606
           IDT N         +   ++L  N ++  +   +     L+ L+LS N L    P     
Sbjct: 156 IDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVV-FAKLKTLDLSSNKLAFMGPEFQSA 213

Query: 607 RSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFS 644
             +  + L +N L   I   +   Q L   +L  N F 
Sbjct: 214 AGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 91.6 bits (228), Expect = 2e-20
 Identities = 48/322 (14%), Positives = 106/322 (32%), Gaps = 35/322 (10%)

Query: 326 LVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLS 385
             +  ++ +     +        +++ L LS N L     A +   T L++++LS N+L 
Sbjct: 12  YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLY 71

Query: 386 GSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKS 445
                ++     L  L +NNN +      EL    S++ L  +NN IS  +  +    + 
Sbjct: 72  -ETL-DLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS-RVSCSR--GQG 121

Query: 446 LEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFS-FQAIQMMDFSTNKF 504
            + +  ++N ++   +      + ++Y  +  N++       L +    ++ ++   N  
Sbjct: 122 KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI 181

Query: 505 MGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVG 564
              +        L                       + +S   +      F         
Sbjct: 182 YD-VKGQVVFAKLK---------------------TLDLSSNKLAFMGPEFQ-SAAGVTW 218

Query: 565 MDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIP 624
           + L +N L   I K L   Q LE+ +L  N         +  ++ R   ++  ++     
Sbjct: 219 ISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTG 277

Query: 625 GNISSLQELTLLNLSYNSFSGF 646
            N       TL +         
Sbjct: 278 QNEEECTVPTLGHYGAYCCEDL 299

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 82.0 bits (203), Expect = 4e-17
 Identities = 46/251 (18%), Positives = 95/251 (37%), Gaps = 23/251 (9%)

Query: 419 LDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARN 478
            +  KI  ++++ +   +        +++ +D S N LS      +  +T L+  +++ N
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68

Query: 479 KLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRS 538
            L     + L S   ++ +D + N     +  G    +L+   ++I   +        ++
Sbjct: 69  VLY-ETLD-LESLSTLRTLDLNNNYV-QELLVGPSIETLHAANNNI-SRVSCSRGQGKKN 124

Query: 539 MVIRI-SVTAIDTNELSFNYQLFSAVGMDLSDNLLHGTIPKGLF--QLQGLEYLNLSFNF 595
           + +    +T +   +     ++     +DL  N +  T+           LE+LNL +NF
Sbjct: 125 IYLANNKITMLRDLDEGCRSRV---QYLDLKLNEID-TVNFAELAASSDTLEHLNLQYNF 180

Query: 596 LDGQVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVPWKQGYQK 655
           +   V G      L+ LDLS N L   +     S   +T ++L  N              
Sbjct: 181 IY-DVKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV----------L 228

Query: 656 FPGAFAGNPNL 666
              A   + NL
Sbjct: 229 IEKALRFSQNL 239

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 49.2 bits (118), Expect = 3e-06
 Identities = 36/181 (19%), Positives = 56/181 (30%), Gaps = 32/181 (17%)

Query: 104 KLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKG 163
               LE L L  N             + LKTLDLS NK    +         +  + L+ 
Sbjct: 167 SSDTLEHLNLQYNFIYDVKGQVV--FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRN 223

Query: 164 NPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLT-GNVHD 222
           N                 L             I ++L + ++L+H DL  N    G + D
Sbjct: 224 N----------------KLV-----------LIEKALRFSQNLEHFDLRGNGFHCGTLRD 256

Query: 223 FYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIAS-LQALTHLNLS 281
           F+     +   + +    L        ++  L          +P   A  L AL H +  
Sbjct: 257 FFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALGHHHHH 316

Query: 282 H 282
           H
Sbjct: 317 H 317

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  136 bits (344), Expect = 8e-34
 Identities = 70/355 (19%), Positives = 136/355 (38%), Gaps = 36/355 (10%)

Query: 87  INLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVV 146
           +++   +           L+  + +   ++      +        ++ L+L+  +   + 
Sbjct: 32  VHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEID 91

Query: 147 PDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSL 206
             A      +++L +  N  +  + P    N    L  L    N          +    L
Sbjct: 92  TYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVP-LLTVLVLERNDLSSLPRGIFHNTPKL 149

Query: 207 KHLDLEKNNLT---GNVHDFYQSLLVLNLGSNRFS----GTLPCFAASAMSLTVLKLDNN 259
             L +  NNL     +      SL  L L SNR +      +P       SL    +  N
Sbjct: 150 TTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIP-------SLFHANVSYN 202

Query: 260 SVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQ 319
            +     + +A   A+  L+ SHN +N  +   +    +L +L L  N+L     +  A 
Sbjct: 203 LL-----STLAIPIAVEELDASHNSIN-VVRGPV--NVELTILKLQHNNL-----TDTAW 249

Query: 320 TTEKAGLVLLDLSHNRFSGEIPLKI-TELKSLQALFLSNNLLIGEIPARIGNLTYLQVID 378
                GLV +DLS+N    +I      +++ L+ L++SNN  +  +      +  L+V+D
Sbjct: 250 LLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLD 307

Query: 379 LSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQIS 433
           LSHN L   +  N     +L  L +++N++   ++       +LK L +S+N   
Sbjct: 308 LSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLKL--STHHTLKNLTLSHNDWD 358

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  106 bits (265), Expect = 6e-24
 Identities = 69/398 (17%), Positives = 135/398 (33%), Gaps = 70/398 (17%)

Query: 250 SLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPR-LVFFEKLLLLDLSFND 308
               + +D  +          +L     +   ++ +  ++    L  F ++ LL+L+   
Sbjct: 28  VFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQ 86

Query: 309 LSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARI 368
           +   + +          +  L +  N      P     +  L  L L  N  +  +P  I
Sbjct: 87  IEE-IDTYAFAYAHT--IQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERND-LSSLPRGI 142

Query: 369 -GNLTYLQVIDLSHNMLSGSIPLNI-VGCFQLLALIVNNNNLSGEIQPELDALDSLKILD 426
             N   L  + +S+N L   I  +       L  L +++N L+  +      + SL   +
Sbjct: 143 FHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT-HVDL--SLIPSLFHAN 198

Query: 427 ISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPN 486
           +S N +S     TLA   ++E +D S N+++  +   +     L    +  N L+     
Sbjct: 199 VSYNLLS-----TLAIPIAVEELDASHNSIN-VVRGPVN--VELTILKLQHNNLTD--TA 248

Query: 487 WLFSFQAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVT 546
           WL ++  +  +D S N+    I    F                                 
Sbjct: 249 WLLNYPGLVEVDLSYNELE-KIMYHPFV-------------------------------- 275

Query: 547 AIDTNELSFNYQLFSAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRL 606
                      ++     + +S+N L   +      +  L+ L+LS N L        + 
Sbjct: 276 -----------KMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLLHVERNQPQF 323

Query: 607 RSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFS 644
             L  L L HNS+   +   +S+   L  L LS+N + 
Sbjct: 324 DRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDWD 358

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 68.8 bits (168), Expect = 3e-12
 Identities = 52/335 (15%), Positives = 102/335 (30%), Gaps = 15/335 (4%)

Query: 105 LSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGN 164
              L  L L  N  T   +       GL  +DLSYN+   ++    +K++ L  L +  N
Sbjct: 231 NVELTILKLQHNNLT-DTAW-LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN 288

Query: 165 P--ELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHD 222
               L              L+ LD S N     +  +      L++L L+ N++      
Sbjct: 289 RLVALNLYGQPIP-----TLKVLDLSHNHL-LHVERNQPQFDRLENLYLDHNSIVTLKLS 342

Query: 223 FYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSH 282
            + +L  L L  N +        A   ++    +D+      I   +         +  +
Sbjct: 343 THHTLKNLTLSHNDWDCN--SLRALFRNVARPAVDDADQHCKIDYQLEHGLCCKESDKPY 400

Query: 283 NHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPL 342
                +        EK+       +        +           +    + +   E+  
Sbjct: 401 LDRLLQYIALTSVVEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNE 460

Query: 343 KITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALI 402
              E++ L    +    L+  + A I   T L+   L  + L+ S          L    
Sbjct: 461 LRAEVQQLTNEQIQQEQLLQGLHAEI--DTNLRRYRLPKDGLARSSDNLNKVFTHLKERQ 518

Query: 403 VNNNNLSGEIQPELDA-LDSLKILDISNNQISGEI 436
                 +   + E DA     + L+  N  +  ++
Sbjct: 519 AFKLRETQARRTEADAKQKETEDLEQENIALEKQL 553

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 67.6 bits (165), Expect = 7e-12
 Identities = 48/288 (16%), Positives = 95/288 (32%), Gaps = 57/288 (19%)

Query: 387 SIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSL 446
            I  N+        + ++          E   L++ KI+   N+ +       L   + +
Sbjct: 18  CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQV 77

Query: 447 EIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFS-FQAIQMMDFSTNKFM 505
           E+++ +   +      A      ++   +  N +   LP  +F     + ++    N  +
Sbjct: 78  ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERND-L 135

Query: 506 GFIPDGNFN-------FSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQ 558
             +P G F+        S++ N                        +  I+ +       
Sbjct: 136 SSLPRGIFHNTPKLTTLSMSNNN-----------------------LERIEDDTFQATTS 172

Query: 559 LFSAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNS 618
           L +   + LS N L   +   L     L + N+S+N L      L    ++  LD SHNS
Sbjct: 173 LQN---LQLSSNRLT-HVDLSLI--PSLFHANVSYNLLS----TLAIPIAVEELDASHNS 222

Query: 619 LTGQIPGNISSLQELTLLNLSYNSFSGFVPWKQGYQKFPGAFAGNPNL 666
           +   + G +    ELT+L L +N+ +                   P L
Sbjct: 223 IN-VVRGPV--NVELTILKLQHNNLTD-----------TAWLLNYPGL 256

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  130 bits (328), Expect = 3e-32
 Identities = 74/360 (20%), Positives = 138/360 (38%), Gaps = 66/360 (18%)

Query: 106 SFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNP 165
           +    L L  N         F     L+ L+L+ N    V P A   L NLR L L+ N 
Sbjct: 32  TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN- 90

Query: 166 ELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDF-- 223
                           L+ +                 L +L  LD+ +N +   + D+  
Sbjct: 91  ---------------RLKLIP----------LGVFTGLSNLTKLDISENKIV-ILLDYMF 124

Query: 224 --YQSLLVLNLGSNRFSGTLPCFAASAM-SLTVLKLDNNSVVGGIPTCIASLQALTHLNL 280
               +L  L +G N     +   A S + SL  L L+  ++       ++ L  L  L L
Sbjct: 125 QDLYNLKSLEVGDNDLV-YISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRL 183

Query: 281 SHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEI 340
            H ++N              + D SF  L                L +L++SH  +   +
Sbjct: 184 RHLNINA-------------IRDYSFKRLY--------------RLKVLEISHWPYLDTM 216

Query: 341 PLKITELKSLQALFLSNNLLIGEIPAR-IGNLTYLQVIDLSHNMLSGSIPLNI-VGCFQL 398
                   +L +L +++   +  +P   + +L YL+ ++LS+N +S +I  ++     +L
Sbjct: 217 TPNCLYGLNLTSLSITHC-NLTAVPYLAVRHLVYLRFLNLSYNPIS-TIEGSMLHELLRL 274

Query: 399 LALIVNNNNLSGEIQPE-LDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLS 457
             + +    L+  ++P     L+ L++L++S NQ++         + +LE +   SN L+
Sbjct: 275 QEIQLVGGQLA-VVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  111 bits (280), Expect = 4e-26
 Identities = 66/329 (20%), Positives = 119/329 (36%), Gaps = 24/329 (7%)

Query: 329 LDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARI-GNLTYLQVIDLSHNMLSGS 387
           +     RF   +P  I      + L L  N  I  +      +  +L+ ++L+ N++S +
Sbjct: 16  VLCHRKRFV-AVPEGI--PTETRLLDLGKNR-IKTLNQDEFASFPHLEELELNENIVS-A 70

Query: 388 IPLNI-VGCFQLLALIVNNNNLSGEIQPE-LDALDSLKILDISNNQISGEIPLTLAGLKS 445
           +        F L  L + +N L   I       L +L  LDIS N+I   +      L +
Sbjct: 71  VEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYN 129

Query: 446 LEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFM 505
           L+ ++   N+L    + A +   +L+  ++ +  L+      L     + ++        
Sbjct: 130 LKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN 189

Query: 506 GFIPDGNFNF-----SLNFNKSDIGRSMPAKSFVLPRSMVIRIS---VTAIDTNELSFNY 557
             I D +F        L  +      +M            + I+   +TA+    +    
Sbjct: 190 -AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLV 248

Query: 558 QLFSAVGMDLSDNLLHGTIPKGLFQ-LQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLS 615
            L     ++LS N +  TI   +   L  L+ + L    L    P     L  LR L++S
Sbjct: 249 YLRF---LNLSYNPIS-TIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVS 304

Query: 616 HNSLTGQIPGNISSLQELTLLNLSYNSFS 644
            N LT        S+  L  L L  N  +
Sbjct: 305 GNQLTTLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  107 bits (270), Expect = 7e-25
 Identities = 69/353 (19%), Positives = 116/353 (32%), Gaps = 62/353 (17%)

Query: 275 LTHLNLSHNHLNYEISPR-LVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSH 333
              L+L  N +   ++      F  L  L+L+ N +S  +            L  L L  
Sbjct: 34  TRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVSA-VEPGAFNNLFN--LRTLGLRS 89

Query: 334 NRFSGEIPLKI-TELKSLQALFLSNNLLIGEIPARI-GNLTYLQVIDLSHNMLSGSIPLN 391
           NR    IPL + T L +L  L +S N  I  +   +  +L  L+ +++  N L   I   
Sbjct: 90  NRLK-LIPLGVFTGLSNLTKLDISENK-IVILLDYMFQDLYNLKSLEVGDNDLV-YISHR 146

Query: 392 I-VGCFQLLALIVNNNNLSGEIQPE-LDALDSLKILDISNNQISGEIPLTLAGLKSLEIV 449
              G   L  L +   NL+  I  E L  L  L +L + +  I+     +   L  L+++
Sbjct: 147 AFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVL 205

Query: 450 DFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFS-FQAIQMMDFSTNKFMGFI 508
           + S      ++        NL   SI    L+  +P         ++ ++ S N     I
Sbjct: 206 EISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPI-STI 263

Query: 509 PDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVGMDLS 568
                +                                           +L     + L 
Sbjct: 264 EGSMLH-------------------------------------------ELLRLQEIQLV 280

Query: 569 DNLLHGTIPKGLFQ-LQGLEYLNLSFNFLDGQVPGLYR-LRSLRALDLSHNSL 619
              L   +    F+ L  L  LN+S N L      ++  + +L  L L  N L
Sbjct: 281 GGQLA-VVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 92.1 bits (229), Expect = 9e-20
 Identities = 57/288 (19%), Positives = 101/288 (35%), Gaps = 64/288 (22%)

Query: 105 LSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGN 164
           LS L  L +S N     +   F  L  LK+L++  N  V +   A   L +L +L L+  
Sbjct: 103 LSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC 162

Query: 165 PELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHD-- 222
                           NL  +            E+L +L  L  L L   N+   + D  
Sbjct: 163 ----------------NLTSIP----------TEALSHLHGLIVLRLRHLNIN-AIRDYS 195

Query: 223 FY--QSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTC-IASLQALTHLN 279
           F     L VL +    +  T+       ++LT L + + ++   +P   +  L  L  LN
Sbjct: 196 FKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLN 254

Query: 280 LSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGE 339
           LS+N ++  I                 ++L                L  + L   + +  
Sbjct: 255 LSYNPIST-IEGS------------MLHELL--------------RLQEIQLVGGQLA-V 286

Query: 340 IPLKI-TELKSLQALFLSNNLLIGEIPARI-GNLTYLQVIDLSHNMLS 385
           +       L  L+ L +S N  +  +   +  ++  L+ + L  N L+
Sbjct: 287 VEPYAFRGLNYLRVLNVSGN-QLTTLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 81.3 bits (201), Expect = 3e-16
 Identities = 51/294 (17%), Positives = 90/294 (30%), Gaps = 59/294 (20%)

Query: 375 QVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISG 434
           + +         ++P  I    +   L +  N +    Q E  +   L+ L+++ N +S 
Sbjct: 14  RAVLCHRKRFV-AVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSA 70

Query: 435 EIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAI 494
             P     L +L  +   SN L        T  +NL    I+ NK+   L         +
Sbjct: 71  VEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNL 130

Query: 495 QMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELS 554
           + ++   N  + +I    F+                                        
Sbjct: 131 KSLEVGDNDLV-YISHRAFS---------------------------------------- 149

Query: 555 FNYQLFSAVGMDLSDNLLHGTIPKGLFQ-LQGLEYLNLSFNFLDGQVPG-LYRLRSLRAL 612
               L S   + L    L  +IP      L GL  L L    ++        RL  L+ L
Sbjct: 150 ---GLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVL 205

Query: 613 DLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVPWKQGYQKFPGAFAGNPNL 666
           ++SH      +  N      LT L++++ + +  VP          A      L
Sbjct: 206 EISHWPYLDTMTPNCLYGLNLTSLSITHCNLTA-VP--------YLAVRHLVYL 250

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 69.4 bits (170), Expect = 1e-12
 Identities = 40/163 (24%), Positives = 61/163 (37%), Gaps = 9/163 (5%)

Query: 102 LCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELIL 161
           L  L  L  L L            F  L  LK L++S+  ++  +    +   NL  L +
Sbjct: 172 LSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSI 231

Query: 162 KGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVH 221
                L  V    V +    L  L+ S+N         L+ L  L+ + L    L   V 
Sbjct: 232 THC-NLTAVPYLAVRHLV-YLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLA-VVE 288

Query: 222 D--FY--QSLLVLNLGSNRFSGTLPCFAASAM-SLTVLKLDNN 259
              F     L VLN+  N+ + TL      ++ +L  L LD+N
Sbjct: 289 PYAFRGLNYLRVLNVSGNQLT-TLEESVFHSVGNLETLILDSN 330

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  121 bits (305), Expect = 3e-30
 Identities = 53/337 (15%), Positives = 103/337 (30%), Gaps = 41/337 (12%)

Query: 129 LSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFS 188
            SG + L    +  +    D + + +                        + N  +++  
Sbjct: 11  SSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQA-------NSNNPQIETR 63

Query: 189 FNSFCGEIPESLYYLKS--LKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAA 246
                    + L          L+L    L                         P  A 
Sbjct: 64  TGRALKATADLLEDATQPGRVALELRSVPLP----------------------QFPDQAF 101

Query: 247 SAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSF 306
               L  + +D   ++  +P  +     L  L L+ N L   +   +    +L  L +  
Sbjct: 102 RLSHLQHMTIDAAGLME-LPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRA 159

Query: 307 NDLSGPLPSKIAQTTEKAG------LVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLL 360
                 LP  +A T           L  L L        +P  I  L++L++L + N+ L
Sbjct: 160 CPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPL 218

Query: 361 IGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALD 420
              +   I +L  L+ +DL       + P    G   L  LI+ + +    +  ++  L 
Sbjct: 219 S-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLT 277

Query: 421 SLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLS 457
            L+ LD+        +P  +A L +  I+    +  +
Sbjct: 278 QLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  113 bits (284), Expect = 2e-27
 Identities = 58/323 (17%), Positives = 99/323 (30%), Gaps = 47/323 (14%)

Query: 101 RLCKLSFLEFLVLSSNAFTGRIST-CFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLREL 159
           R    +  +    +  A              G   L+L         PD   +L +L+ +
Sbjct: 51  RQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHM 109

Query: 160 ILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGN 219
            +     L    P  +  F+  LE L  + N     +P S+  L  L+ L +        
Sbjct: 110 TIDAA-GLM-ELPDTMQQFA-GLETLTLARNPL-RALPASIASLNRLRELSIRACPELTE 165

Query: 220 VHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLN 279
           + +         L S   SG          +L  L+L+   +   +P  IA+LQ L  L 
Sbjct: 166 LPE--------PLASTDASGEHQGLV----NLQSLRLEWTGIRS-LPASIANLQNLKSLK 212

Query: 280 LSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGE 339
           + ++ L+                          L   I        L  LDL        
Sbjct: 213 IRNSPLSA-------------------------LGPAIHHLP---KLEELDLRGCTALRN 244

Query: 340 IPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLL 399
            P        L+ L L +   +  +P  I  LT L+ +DL   +    +P  I       
Sbjct: 245 YPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANC 304

Query: 400 ALIVNNNNLSGEIQPELDALDSL 422
            ++V  +  +   Q    A  + 
Sbjct: 305 IILVPPHLQAQLDQHRPVARPAE 327

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  106 bits (268), Expect = 2e-25
 Identities = 50/357 (14%), Positives = 109/357 (30%), Gaps = 64/357 (17%)

Query: 250 SLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDL 309
               L    ++ +      ++  Q   + + +  H  +  +          +   +   L
Sbjct: 13  GRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANS----NNPQIETRTGRAL 68

Query: 310 SGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIG 369
                  +   T+  G V L+L       + P +   L  LQ + +    L+ E+P  + 
Sbjct: 69  KA-TADLLEDATQP-GRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQ 124

Query: 370 NLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNL---------SGEIQPELDALD 420
               L+ + L+ N L  ++P +I    +L  L +              S +   E   L 
Sbjct: 125 QFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLV 183

Query: 421 SLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKL 480
           +L+ L +    I   +P ++A L++L+ +   ++ LS +L  AI     L+   +     
Sbjct: 184 NLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTA 241

Query: 481 SGNLPNWLFSFQAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMV 540
             N P        ++ +       +  +P              I                
Sbjct: 242 LRNYPPIFGGRAPLKRLILKDCSNLLTLPLD------------IH--------------- 274

Query: 541 IRISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLD 597
                            +L     +DL   +    +P  + QL     + +  +   
Sbjct: 275 -----------------RLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  105 bits (263), Expect = 9e-25
 Identities = 49/332 (14%), Positives = 94/332 (28%), Gaps = 51/332 (15%)

Query: 181 NLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGT 240
             E L F  ++      + L   +   + D  + +      +   +   +   + R    
Sbjct: 13  GRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANS--NNPQIETRTGRALKA 70

Query: 241 LPCF--AASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEK 298
                  A+      L+L +  +    P     L  L H+ +    L             
Sbjct: 71  TADLLEDATQPGRVALELRSVPLPQ-FPDQAFRLSHLQHMTIDAAGLME----------- 118

Query: 299 LLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNN 358
                         LP  + Q     GL  L L+ N     +P  I  L  L+ L +   
Sbjct: 119 --------------LPDTMQQFA---GLETLTLARNPLR-ALPASIASLNRLRELSIRAC 160

Query: 359 LLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDA 418
             + E+P  + +                       G   L +L +    +   +   +  
Sbjct: 161 PELTELPEPLAST---------------DASGEHQGLVNLQSLRLEWTGIR-SLPASIAN 204

Query: 419 LDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARN 478
           L +LK L I N+ +S  +   +  L  LE +D        +          LK   +   
Sbjct: 205 LQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDC 263

Query: 479 KLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPD 510
                LP  +     ++ +D      +  +P 
Sbjct: 264 SNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPS 295

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 90.4 bits (225), Expect = 7e-20
 Identities = 41/302 (13%), Positives = 93/302 (30%), Gaps = 30/302 (9%)

Query: 347 LKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNN 406
               + L+   +  +      +         D +    +               +     
Sbjct: 11  SSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQAN-----SNNPQIETRTG 65

Query: 407 NLSGEIQPELDAL--DSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAI 464
                    L+         L++ +  +  + P     L  L+ +   +  L   L D +
Sbjct: 66  RALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTM 123

Query: 465 TKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDI 524
            ++  L+  ++ARN L   LP  + S   ++ +       +  +P+             +
Sbjct: 124 QQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPE------------PL 170

Query: 525 GRSMPAKSFVLPRSMVI-RISVTAIDT--NELSFNYQLFSAVGMDLSDNLLHGTIPKGLF 581
             +  +       ++   R+  T I +    ++    L +   + + ++ L   +   + 
Sbjct: 171 ASTDASGEHQGLVNLQSLRLEWTGIRSLPASIA---NLQNLKSLKIRNSPLS-ALGPAIH 226

Query: 582 QLQGLEYLNLS-FNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSY 640
            L  LE L+L     L    P       L+ L L   S    +P +I  L +L  L+L  
Sbjct: 227 HLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRG 286

Query: 641 NS 642
             
Sbjct: 287 CV 288

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 57.3 bits (139), Expect = 7e-09
 Identities = 23/101 (22%), Positives = 38/101 (37%), Gaps = 2/101 (1%)

Query: 566 DLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPG 625
           +L    L    P   F+L  L+++ +    L      + +   L  L L+ N L   +P 
Sbjct: 87  ELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR-ALPA 144

Query: 626 NISSLQELTLLNLSYNSFSGFVPWKQGYQKFPGAFAGNPNL 666
           +I+SL  L  L++        +P         G   G  NL
Sbjct: 145 SIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNL 185

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 51.5 bits (124), Expect = 4e-07
 Identities = 36/261 (13%), Positives = 66/261 (25%), Gaps = 65/261 (24%)

Query: 398 LLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLS 457
              L    +         L         D +    +           + +I   +   L 
Sbjct: 14  RENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQA----NSNNPQIETRTGRALK 69

Query: 458 GSLNDAITKWT--NLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDGNFNF 515
            +  D +   T        +    L    P+  F    +Q M       M          
Sbjct: 70  -ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM---------- 117

Query: 516 SLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGT 575
                              LP +M                  Q      + L+ N L   
Sbjct: 118 ------------------ELPDTM-----------------QQFAGLETLTLARNPLR-A 141

Query: 576 IPKGLFQLQGLEYLNLSFNFLDGQVP----------GLYRLRSLRALDLSHNSLTGQIPG 625
           +P  +  L  L  L++       ++P              L +L++L L    +   +P 
Sbjct: 142 LPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPA 200

Query: 626 NISSLQELTLLNLSYNSFSGF 646
           +I++LQ L  L +  +  S  
Sbjct: 201 SIANLQNLKSLKIRNSPLSAL 221

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  123 bits (311), Expect = 1e-29
 Identities = 70/359 (19%), Positives = 119/359 (33%), Gaps = 82/359 (22%)

Query: 121 RISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGN-----PELGGVFPGWV 175
           ++  C    +G   L++  +     +PD +    ++  L++  N     P L        
Sbjct: 33  KMRACL--NNGNAVLNVGESGL-TTLPDCL--PAHITTLVIPDNNLTSLPALPP------ 81

Query: 176 GNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSN 235
                 L  L+ S N     +P     L  L        +L          L  L +  N
Sbjct: 82  -----ELRTLEVSGNQL-TSLPVLPPGLLELSIFSNPLTHLP----ALPSGLCKLWIFGN 131

Query: 236 RFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVF 295
           + + +LP        L  L + +N     + +  A    L  L   +N L   +      
Sbjct: 132 QLT-SLP---VLPPGLQELSVSDNQ----LASLPALPSELCKLWAYNNQLT-SLPMLP-- 180

Query: 296 FEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFL 355
              L  L +S N L+  LP+  ++      L  L   +NR +  +P        L+ L +
Sbjct: 181 -SGLQELSVSDNQLAS-LPTLPSE------LYKLWAYNNRLT-SLP---ALPSGLKELIV 228

Query: 356 SNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPE 415
           S N L   +P     L  L    +S N L+ S+P                          
Sbjct: 229 SGNRL-TSLPVLPSELKEL---MVSGNRLT-SLP-------------------------- 257

Query: 416 LDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFS 474
                 L  L +  NQ++  +P +L  L S   V+   N LS     A+ + T+   +S
Sbjct: 258 -MLPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYS 314

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  121 bits (305), Expect = 7e-29
 Identities = 64/301 (21%), Positives = 112/301 (37%), Gaps = 44/301 (14%)

Query: 181 NLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGT 240
               L+   +     +P+ L     +  L +  NNLT ++      L  L +  N+ + +
Sbjct: 41  GNAVLNVGESGL-TTLPDCL--PAHITTLVIPDNNLT-SLPALPPELRTLEVSGNQLT-S 95

Query: 241 LPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLL 300
           LP      + L++       +        A    L  L +  N L   +         L 
Sbjct: 96  LPVLPPGLLELSIFSNPLTHLP-------ALPSGLCKLWIFGNQLT-SLPVLP---PGLQ 144

Query: 301 LLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLL 360
            L +S N L+  LP+  ++      L  L   +N+ +  +P        LQ L +S+N L
Sbjct: 145 ELSVSDNQLAS-LPALPSE------LCKLWAYNNQLT-SLP---MLPSGLQELSVSDNQL 193

Query: 361 IGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALD 420
              +P     L  L   +     L             L  LIV+ N L+    P L    
Sbjct: 194 A-SLPTLPSELYKLWAYNNRLTSLPALPS-------GLKELIVSGNRLTS--LPVL--PS 241

Query: 421 SLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKL 480
            LK L +S N+++  +P+  +GL SL       N L+  L +++   ++    ++  N L
Sbjct: 242 ELKELMVSGNRLT-SLPMLPSGLLSL---SVYRNQLT-RLPESLIHLSSETTVNLEGNPL 296

Query: 481 S 481
           S
Sbjct: 297 S 297

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  121 bits (304), Expect = 9e-29
 Identities = 74/356 (20%), Positives = 119/356 (33%), Gaps = 73/356 (20%)

Query: 101 RLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELI 160
           R C  +    L +  +  T  +  C    + + TL +  N              NL  L 
Sbjct: 35  RACLNNGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDN--------------NLTSL- 76

Query: 161 LKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNV 220
               P L              L  L+ S N     +P     L  L        +L    
Sbjct: 77  ----PALPP-----------ELRTLEVSGNQL-TSLPVLPPGLLELSIFSNPLTHLP--- 117

Query: 221 HDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNL 280
                 L  L +  N+ + +LP        L  L + +N     + +  A    L  L  
Sbjct: 118 -ALPSGLCKLWIFGNQLT-SLP---VLPPGLQELSVSDNQ----LASLPALPSELCKLWA 168

Query: 281 SHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEI 340
            +N L   +         L  L +S N L+  LP+  ++      L  L   +NR +  +
Sbjct: 169 YNNQLT-SLPMLP---SGLQELSVSDNQLAS-LPTLPSE------LYKLWAYNNRLT-SL 216

Query: 341 PLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLA 400
           P        L+ L +S N L   +P     L  L    +S N L+ S+P+       LL+
Sbjct: 217 P---ALPSGLKELIVSGNRL-TSLPVLPSELKEL---MVSGNRLT-SLPMLPS---GLLS 265

Query: 401 LIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNL 456
           L V  N L+  +   L  L S   +++  N +S     TL  L+ +      S  +
Sbjct: 266 LSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS---ERTLQALREITSAPGYSGPI 317

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  112 bits (281), Expect = 7e-26
 Identities = 65/347 (18%), Positives = 107/347 (30%), Gaps = 50/347 (14%)

Query: 105 LSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGN 164
            + +  LV+  N  T  +      L   +TL++S N+    +P     L  L        
Sbjct: 60  PAHITTLVIPDNNLT-SLPALPPEL---RTLEVSGNQLT-SLPVLPPGLLELSIFSNPLT 114

Query: 165 --PELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHD 222
             P L    P         L KL    N     +P        L+ L +  N L  ++  
Sbjct: 115 HLPAL----PS-------GLCKLWIFGNQLT-SLPVLP---PGLQELSVSDNQLA-SLPA 158

Query: 223 FYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSH 282
               L  L   +N+ + +LP        L  L + +N +   +PT  + L  L   N   
Sbjct: 159 LPSELCKLWAYNNQLT-SLP---MLPSGLQELSVSDNQLAS-LPTLPSELYKLWAYNNRL 213

Query: 283 NHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPL 342
             L    S        L  L +S N L+  LP   ++      L  L +S NR +  +P 
Sbjct: 214 TSLPALPS-------GLKELIVSGNRLTS-LPVLPSE------LKELMVSGNRLT-SLP- 257

Query: 343 KITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALI 402
                  L +L +  N L   +P  + +L+    ++L  N LS    L  +         
Sbjct: 258 --MLPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS-ERTLQALREITSAPGY 313

Query: 403 VNNNNLSGEIQPELDALDSLKILDISNNQISGEI--PLTLAGLKSLE 447
                                 L  ++  +      P          
Sbjct: 314 SGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAPADRWHMFG 360

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 98.4 bits (245), Expect = 2e-21
 Identities = 80/412 (19%), Positives = 134/412 (32%), Gaps = 94/412 (22%)

Query: 226 SLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHL 285
              VLN+G +  + TLP        +T L + +N++   +P   A    L  L +S N L
Sbjct: 41  GNAVLNVGESGLT-TLP--DCLPAHITTLVIPDNNLTS-LP---ALPPELRTLEVSGNQL 93

Query: 286 NYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKIT 345
              +        +L +       L   LPS         GL  L +  N+ +  +P    
Sbjct: 94  T-SLPVLPPGLLELSIFSNPLTHLP-ALPS---------GLCKLWIFGNQLT-SLP---V 138

Query: 346 ELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNN 405
               LQ L +S+N L   +PA    L  L      +N L+ S+P+       L  L V++
Sbjct: 139 LPPGLQELSVSDNQL-ASLPALPSELCKL---WAYNNQLT-SLPMLP---SGLQELSVSD 190

Query: 406 NNLSGEIQPEL-DALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAI 464
           N L+      L      L  L   NN+++  +P   +GLK L +    S N   SL    
Sbjct: 191 NQLA-----SLPTLPSELYKLWAYNNRLT-SLPALPSGLKELIV----SGNRLTSLPVLP 240

Query: 465 TKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDI 524
           ++   L    ++ N+L+ +LP        +  +    N+                     
Sbjct: 241 SELKEL---MVSGNRLT-SLPMLP---SGLLSLSVYRNQLT------------------- 274

Query: 525 GRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGTIPKGLFQLQ 584
                     LP S+                   L S   ++L  N L     + L ++ 
Sbjct: 275 ---------RLPESL-----------------IHLSSETTVNLEGNPLSERTLQALREIT 308

Query: 585 GLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQELTLL 636
                +      D       R      L  + + L     G  +      + 
Sbjct: 309 SAPGYSGPIIRFDMAGASAPRETRALHLAAA-DWLVPAREGEPAPADRWHMF 359

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 92.3 bits (229), Expect = 2e-19
 Identities = 66/325 (20%), Positives = 118/325 (36%), Gaps = 49/325 (15%)

Query: 325 GLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNML 384
           G  +L++  +  +  +P  +     +  L + +N L   +PA    L  L   ++S N L
Sbjct: 41  GNAVLNVGESGLT-TLPDCL--PAHITTLVIPDNNLT-SLPALPPELRTL---EVSGNQL 93

Query: 385 SGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLK 444
           + S+P+   G  +L        +L             L  L I  NQ++  +P+   GL+
Sbjct: 94  T-SLPVLPPGLLELSIFSNPLTHLPAL-------PSGLCKLWIFGNQLT-SLPVLPPGLQ 144

Query: 445 SLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKF 504
            L     S N L+ SL    ++   L       N+L+ +LP        +Q +  S N+ 
Sbjct: 145 EL---SVSDNQLA-SLPALPSELCKLW---AYNNQLT-SLPM---LPSGLQELSVSDNQL 193

Query: 505 MGFIPDGNFNF-SLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAV 563
              +P        L    + +  S+PA    LP  +        +  N L+    L    
Sbjct: 194 A-SLPTLPSELYKLWAYNNRL-TSLPA----LPSGL----KELIVSGNRLT---SLPVLP 240

Query: 564 G----MDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSL 619
                + +S N L  ++P       GL  L++  N L      L  L S   ++L  N L
Sbjct: 241 SELKELMVSGNRL-TSLPM---LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPL 296

Query: 620 TGQIPGNISSLQELTLLNLSYNSFS 644
           + +    +  +      +     F 
Sbjct: 297 SERTLQALREITSAPGYSGPIIRFD 321

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 60.3 bits (146), Expect = 1e-09
 Identities = 40/225 (17%), Positives = 73/225 (32%), Gaps = 47/225 (20%)

Query: 419 LDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARN 478
            +   +L++  + ++  +P  L     +  +    NNL+ SL         L+   ++ N
Sbjct: 39  NNGNAVLNVGESGLT-TLPDCL--PAHITTLVIPDNNLT-SLPALPP---ELRTLEVSGN 91

Query: 479 KLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRS 538
           +L+ +LP        + +           +P G     +  N+     S+P         
Sbjct: 92  QLT-SLPVLPPGLLELSIFSNPLTHLPA-LPSGLCKLWIFGNQL---TSLPV-------- 138

Query: 539 MVIRISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDG 598
                                     + +SDN L  ++P    +L     L    N L  
Sbjct: 139 -------------------LPPGLQELSVSDNQL-ASLPALPSELC---KLWAYNNQLT- 174

Query: 599 QVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSF 643
            +P L     L+ L +S N L   +P   S L +L   N    S 
Sbjct: 175 SLPML--PSGLQELSVSDNQLA-SLPTLPSELYKLWAYNNRLTSL 216

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  120 bits (302), Expect = 5e-29
 Identities = 80/404 (19%), Positives = 140/404 (34%), Gaps = 59/404 (14%)

Query: 98  VHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLR 157
           ++PR    +FL+  +  S+  T  +      +        +++++    P    + R + 
Sbjct: 3   INPRNVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMA 61

Query: 158 ELILKGNPELG-----------GVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSL 206
              L+   +                P        +LE L  S NS   E+PE    LKSL
Sbjct: 62  VSRLRDCLDRQAHELELNNLGLSSLPELPP----HLESLVASCNSL-TELPELPQSLKSL 116

Query: 207 KHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIP 266
              +     L+         L  L + +N+    LP    S+  L ++ +DNNS    + 
Sbjct: 117 LVDNNNLKALSDLPP----LLEYLGVSNNQLE-KLPELQNSS-FLKIIDVDNNS----LK 166

Query: 267 TCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGL 326
                  +L  +   +N L  E  P L     L  +    N L   LP           L
Sbjct: 167 KLPDLPPSLEFIAAGNNQL--EELPELQNLPFLTAIYADNNSLKK-LPDLPLS------L 217

Query: 327 VLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSG 386
             +   +N    E+P ++  L  L  ++  NNLL   +P    +L  L   ++  N L+ 
Sbjct: 218 ESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLK-TLPDLPPSLEAL---NVRDNYLT- 270

Query: 387 SIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSL 446
            +P        L       + LS           +L  L+ S+N+I   +      L+ L
Sbjct: 271 DLPELPQSLTFLDVSENIFSGLSELP-------PNLYYLNASSNEIR-SLCDLPPSLEEL 322

Query: 447 EIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFS 490
              + S+N L   L         L+    + N L+  +P    +
Sbjct: 323 ---NVSNNKLI-ELPALP---PRLERLIASFNHLA-EVPELPQN 358

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  118 bits (299), Expect = 1e-28
 Identities = 86/458 (18%), Positives = 163/458 (35%), Gaps = 84/458 (18%)

Query: 181 NLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGT 240
            L++     ++   E+P     +KS        +                  G  R    
Sbjct: 12  FLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWE--------RNAPPGNGEQREMAV 62

Query: 241 LPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLL 300
                        L+L+N  +   +P     L+    L  S N L  E+       + LL
Sbjct: 63  SRLRDCLDRQAHELELNNLGLS-SLPELPPHLE---SLVASCNSLT-ELPELPQSLKSLL 117

Query: 301 LLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLL 360
           + + +   LS   P           L  L +S+N+   ++P ++     L+ + + NN L
Sbjct: 118 VDNNNLKALSDLPPL----------LEYLGVSNNQLE-KLP-ELQNSSFLKIIDVDNNSL 165

Query: 361 IGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALD 420
             ++P    +L ++      +N L   +P  +     L A+  +NN+L        D   
Sbjct: 166 K-KLPDLPPSLEFI---AAGNNQLE-ELP-ELQNLPFLTAIYADNNSLKKLP----DLPL 215

Query: 421 SLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKL 480
           SL+ +   NN +  E+P  L  L  L  +   +N L  +L D      +L+  ++  N L
Sbjct: 216 SLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLK-TLPDLP---PSLEALNVRDNYL 269

Query: 481 SGNLPNWLFSFQAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMV 540
           + +LP    S   + + +   +      P                               
Sbjct: 270 T-DLPELPQSLTFLDVSENIFSGLSELPP------------------------------- 297

Query: 541 IRISVTAIDTNEL-SFNYQLFSAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQ 599
             +      +NE+ S      S   +++S+N L   +P    +L+    L  SFN L  +
Sbjct: 298 -NLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLE---RLIASFNHL-AE 351

Query: 600 VPGLYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLN 637
           VP L   ++L+ L + +N L  + P    S+++L + +
Sbjct: 352 VPEL--PQNLKQLHVEYNPLR-EFPDIPESVEDLRMNS 386

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  111 bits (279), Expect = 4e-26
 Identities = 75/358 (20%), Positives = 125/358 (34%), Gaps = 51/358 (14%)

Query: 100 PRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLREL 159
           P L   SFL+ + + +N     +         L+ +    N+    +P+ +  L  L  +
Sbjct: 147 PELQNSSFLKIIDVDNN----SLKKLPDLPPSLEFIAAGNNQLE-ELPE-LQNLPFLTAI 200

Query: 160 ILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGN 219
               N  L  +    +     +LE +    N    E    L  L  L  +  + N L   
Sbjct: 201 YADNN-SLKKLPDLPL-----SLESIVAGNNIL--EELPELQNLPFLTTIYADNNLLK-T 251

Query: 220 VHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLN 279
           + D   SL  LN+  N  +  LP       SLT L +  N    G+     +L    +LN
Sbjct: 252 LPDLPPSLEALNVRDNYLT-DLP---ELPQSLTFLDVSENIF-SGLSELPPNL---YYLN 303

Query: 280 LSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGE 339
            S N +   +         L  L++S N L   LP+   +      L  L  S N  + E
Sbjct: 304 ASSNEIR-SLCDLP---PSLEELNVSNNKLIE-LPALPPR------LERLIASFNHLA-E 351

Query: 340 IPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLL 399
           +P      ++L+ L +  N L  E P    ++      DL  N     +P        L 
Sbjct: 352 VP---ELPQNLKQLHVEYNPLR-EFPDIPESVE-----DLRMNSHLAEVPELPQ---NLK 399

Query: 400 ALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLS 457
            L V  N L  E     +   S++ L +++ ++             LE   F  ++  
Sbjct: 400 QLHVETNPLR-EFPDIPE---SVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  110 bits (276), Expect = 9e-26
 Identities = 87/418 (20%), Positives = 146/418 (34%), Gaps = 73/418 (17%)

Query: 82  GHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNK 141
            H+ S+  +  SL+ ++      L  L     +  A +            L+ L +S N+
Sbjct: 91  PHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPP-------LLEYLGVSNNQ 142

Query: 142 FVGVVPDAIMKLRNLRELILKGNP--ELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPES 199
              +    +     L+ + +  N   +L    P    +    LE +    N    E+PE 
Sbjct: 143 LEKL--PELQNSSFLKIIDVDNNSLKKL----PDLPPS----LEFIAAGNNQLE-ELPE- 190

Query: 200 LYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNN 259
           L  L  L  +  + N+L   + D   SL  +  G+N     LP    +   LT +  DNN
Sbjct: 191 LQNLPFLTAIYADNNSLK-KLPDLPLSLESIVAGNNILE-ELPELQ-NLPFLTTIYADNN 247

Query: 260 SVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQ 319
            +   +P    SL+    LN+  N+L  ++         L + +  F+ LS   P+    
Sbjct: 248 LLKT-LPDLPPSLE---ALNVRDNYLT-DLPELPQSLTFLDVSENIFSGLSELPPN---- 298

Query: 320 TTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDL 379
                 L  L+ S N     +        SL+ L +SNN LI E+PA    L  L     
Sbjct: 299 ------LYYLNASSNEIR-SLC---DLPPSLEELNVSNNKLI-ELPALPPRLERL---IA 344

Query: 380 SHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDAL----------------DSLK 423
           S N L+  +P        L  L V  N L  E     +++                 +LK
Sbjct: 345 SFNHLA-EVPELP---QNLKQLHVEYNPLR-EFPDIPESVEDLRMNSHLAEVPELPQNLK 399

Query: 424 ILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLS 481
            L +  N +  E P     ++ L +   +S  +      A      L+      +   
Sbjct: 400 QLHVETNPLR-EFPDIPESVEDLRM---NSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 99.3 bits (248), Expect = 3e-22
 Identities = 82/414 (19%), Positives = 140/414 (33%), Gaps = 86/414 (20%)

Query: 246 ASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLS 305
            S   L      ++++   +P    ++++ T    + +       P           +++
Sbjct: 8   VSNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPP-----GNGEQREMA 61

Query: 306 FNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIP 365
            + L   L  +            L+L++   S  +P        L++L  S N L  E+P
Sbjct: 62  VSRLRDCLDRQ---------AHELELNNLGLS-SLP---ELPPHLESLVASCNSLT-ELP 107

Query: 366 ARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKIL 425
               +L  L V + +   LS   P        L  L V+NN L  ++ PEL     LKI+
Sbjct: 108 ELPQSLKSLLVDNNNLKALSDLPP-------LLEYLGVSNNQLE-KL-PELQNSSFLKII 158

Query: 426 DISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLP 485
           D+ NN +  ++P       SLE +   +N L   L + +     L       N L   LP
Sbjct: 159 DVDNNSLK-KLP---DLPPSLEFIAAGNNQLE-ELPE-LQNLPFLTAIYADNNSLK-KLP 211

Query: 486 NWLFSFQAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISV 545
           +   S   ++ +    N         N  F                              
Sbjct: 212 DLPLS---LESIVAGNNILEELPELQNLPFLTTIY------------------------- 243

Query: 546 TAIDTNEL-SFNYQLFSAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLY 604
              D N L +      S   +++ DN L   +P+    L  L+     F+ L    P LY
Sbjct: 244 --ADNNLLKTLPDLPPSLEALNVRDNYLT-DLPELPQSLTFLDVSENIFSGLSELPPNLY 300

Query: 605 RL--------------RSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFS 644
            L               SL  L++S+N L  ++P     L+    L  S+N  +
Sbjct: 301 YLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLER---LIASFNHLA 350

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 95.4 bits (238), Expect = 5e-21
 Identities = 70/373 (18%), Positives = 113/373 (30%), Gaps = 91/373 (24%)

Query: 289 ISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITEL- 347
           I+PR V    L       ++L+  +P +               + + +    P    E  
Sbjct: 3   INPRNVSNTFLQEPLRHSSNLT-EMPVEAENVKS---KTEYYNAWSEWERNAPPGNGEQR 58

Query: 348 ------------KSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGC 395
                       +    L L+N  L   +P    +L  L     S N L+  +P      
Sbjct: 59  EMAVSRLRDCLDRQAHELELNNLGL-SSLPELPPHLESL---VASCNSLT-ELPELPQSL 113

Query: 396 FQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNN 455
             LL    N   LS            L+ L +SNNQ+  ++P  L     L+I+D  +N+
Sbjct: 114 KSLLVDNNNLKALSDLP-------PLLEYLGVSNNQLE-KLP-ELQNSSFLKIIDVDNNS 164

Query: 456 LSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDGNFNF 515
           L   L D      +L++ +   N+L   LP  L +   +  +    N             
Sbjct: 165 LK-KLPDLPP---SLEFIAAGNNQLE-ELPE-LQNLPFLTAIYADNNSLKKLPD------ 212

Query: 516 SLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGT 575
                                                        S   +   +N+L   
Sbjct: 213 ------------------------------------------LPLSLESIVAGNNIL--E 228

Query: 576 IPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQELTL 635
               L  L  L  +    N L   +P L    SL AL++  N LT  +P    SL  L +
Sbjct: 229 ELPELQNLPFLTTIYADNNLL-KTLPDL--PPSLEALNVRDNYLT-DLPELPQSLTFLDV 284

Query: 636 LNLSYNSFSGFVP 648
               ++  S   P
Sbjct: 285 SENIFSGLSELPP 297

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 58.5 bits (142), Expect = 4e-09
 Identities = 40/185 (21%), Positives = 69/185 (37%), Gaps = 34/185 (18%)

Query: 108 LEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGN--- 164
           L +L  SSN     I +       L+ L++S NK +  +P        L  LI   N   
Sbjct: 299 LYYLNASSN----EIRSLCDLPPSLEELNVSNNKLI-ELPALP---PRLERLIASFNHLA 350

Query: 165 --PELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHD 222
             PEL             NL++L   +N    E P+    ++ L+      N+    V +
Sbjct: 351 EVPELPQ-----------NLKQLHVEYNPL-REFPDIPESVEDLRM-----NSHLAEVPE 393

Query: 223 FYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSH 282
             Q+L  L++ +N      P       S+  L++++  VV        +   L      H
Sbjct: 394 LPQNLKQLHVETNPLR-EFP---DIPESVEDLRMNSERVVDPYEFAHETTDKLEDDVFEH 449

Query: 283 NHLNY 287
           +H ++
Sbjct: 450 HHHHH 454

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  116 bits (293), Expect = 1e-27
 Identities = 87/541 (16%), Positives = 166/541 (30%), Gaps = 88/541 (16%)

Query: 108 LEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPEL 167
              L +S N  +   ++    LS L+ L +S+N+   +        + L  L L  N +L
Sbjct: 23  TTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN-KL 81

Query: 168 GGVFPGWVGNFSMNLEKLDFSFNSF-CGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQS 226
             +      N    L+ LD SFN+F    I +    +  LK L L   +L  +       
Sbjct: 82  VKISCHPTVN----LKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAH 137

Query: 227 LLVLNLGSNRFSGTLPCFA-ASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHL 285
           L +  +                        L            I  +   T  NL  +++
Sbjct: 138 LNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNI 197

Query: 286 NYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKIT 345
              +      +   +L  L  N                  L  ++ + N F     L++ 
Sbjct: 198 KCVLEDNKCSYFLSILAKLQTN-----------PKLSNLTLNNIETTWNSFIR--ILQLV 244

Query: 346 ELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNN 405
              ++    +SN  L G            +  D S   L             L    V +
Sbjct: 245 WHTTVWYFSISNVKLQG--------QLDFRDFDYSGTSLK-----------ALSIHQVVS 285

Query: 406 NNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAIT 465
           +          +   ++ I + + +       L  + +     +DFS+N L+ ++ +   
Sbjct: 286 DVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCG 345

Query: 466 KWTNLKYFSIARNKLSGNLPNWLFSFQ---AIQMMDFSTNKFMGFIPDGNFNFSLNFNKS 522
             T L+   +  N+L   L           ++Q +D S N        G+ +        
Sbjct: 346 HLTELETLILQMNQLK-ELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCS-------- 396

Query: 523 DIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGTIPKGLFQ 582
                                                 S + +++S N+L  TI + L  
Sbjct: 397 -----------------------------------WTKSLLSLNMSSNILTDTIFRCLPP 421

Query: 583 LQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNS 642
              ++ L+L  N +      + +L +L+ L+++ N L     G    L  L  + L  N 
Sbjct: 422 R--IKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNP 479

Query: 643 F 643
           +
Sbjct: 480 W 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 95.7 bits (238), Expect = 7e-21
 Identities = 83/410 (20%), Positives = 158/410 (38%), Gaps = 34/410 (8%)

Query: 265 IPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKA 324
           +P  ++     T LN+S N+++   +  ++   KL +L +S N +     S      E  
Sbjct: 15  VPKDLSQ--KTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQE-- 70

Query: 325 GLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIG-EIPARIGNLTYLQVIDLSHNM 383
            L  LDLSHN+      +      +L+ L LS N      I    GN++ L+ + LS   
Sbjct: 71  -LEYLDLSHNKLVK---ISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTH 126

Query: 384 LSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELD---ALDSLKILDISNNQISGEIPLTL 440
           L  S  L I        L+V       +  PE       +SL I+  +N +    + +++
Sbjct: 127 LEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSV 186

Query: 441 AGLKSLEIVDFSSNNLSGSLNDA------ITKWTNLKYFSIARNKLSGNLPNWLFSFQ-- 492
             + +LE+ +          +        +     L   ++   + + N    +      
Sbjct: 187 KTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWH 246

Query: 493 -AIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMV----IRISVTA 547
             +     S  K  G +   +F++S    K+     + +  F  P+S +      +++  
Sbjct: 247 TTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKN 306

Query: 548 IDTNELSFN-----YQLFSAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFL---DGQ 599
              +           ++   + +D S+NLL  T+ +    L  LE L L  N L      
Sbjct: 307 FTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKI 366

Query: 600 VPGLYRLRSLRALDLSHNSLTGQIP-GNISSLQELTLLNLSYNSFSGFVP 648
                +++SL+ LD+S NS++     G+ S  + L  LN+S N  +  + 
Sbjct: 367 AEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIF 416

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 87.6 bits (217), Expect = 3e-18
 Identities = 72/411 (17%), Positives = 136/411 (33%), Gaps = 53/411 (12%)

Query: 104 KLSFLEFLVLSSNAFTGRISTCFGGLSGLK-TLDLSYNKFVGVVPDAIMKLRNLRELILK 162
            +S L+FL LS+             L+  K  L L         P+ +         I+ 
Sbjct: 113 NMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVF 172

Query: 163 GNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKH----LDLEKNNLTG 218
              +              NLE  +        +    L  L  L+      +L  NN+  
Sbjct: 173 PTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIET 232

Query: 219 NVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHL 278
             + F + L ++   +  +            S++ +KL              SL+AL+  
Sbjct: 233 TWNSFIRILQLVWHTTVWY-----------FSISNVKLQGQLDFRDFDYSGTSLKALSIH 281

Query: 279 NLSHNHLNYEISPRLVFFEKLLLLDLSFND---LSGPLPSKIAQTTEKAGLVLLDLSHNR 335
            +  +   +  S     F  + + + + +    +    PSKI+          LD S+N 
Sbjct: 282 QVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLH------LDFSNNL 335

Query: 336 FSGEIPLKITELKSLQALFLSNNLL--IGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIV 393
            +  +      L  L+ L L  N L  + +I      +  LQ +D+S N +S        
Sbjct: 336 LTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGD- 394

Query: 394 GCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSS 453
                                      SL  L++S+N ++  I   L     ++++D  S
Sbjct: 395 ----------------------CSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHS 430

Query: 454 NNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKF 504
           N +  S+   + K   L+  ++A N+L            ++Q +   TN +
Sbjct: 431 NKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 84.9 bits (210), Expect = 2e-17
 Identities = 88/451 (19%), Positives = 150/451 (33%), Gaps = 36/451 (7%)

Query: 209 LDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTC 268
           +D  KN L     D  Q   +LN+  N  S        S   L +L + +N +     + 
Sbjct: 5   VDRSKNGLIHVPKDLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISV 64

Query: 269 IASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDL-SGPLPSKIAQTTEKAGLV 327
               Q L +L+LSHN L        V    L  LDLSFN   + P+  +    ++   L 
Sbjct: 65  FKFNQELEYLDLSHNKLVKISCHPTV---NLKHLDLSFNAFDALPICKEFGNMSQ---LK 118

Query: 328 LLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGS 387
            L LS         L I  L   + L +       +       L       L     +  
Sbjct: 119 FLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKED--PEGLQDFNTESLHIVFPTNK 176

Query: 388 IPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLE 447
               I+         +  +N+   ++    +     +  +  N     +        +L 
Sbjct: 177 EFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNL--------TLN 228

Query: 448 IVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFS----TNK 503
            ++ + N+    L   +   T + YFSI+  KL G L    F +    +   S     + 
Sbjct: 229 NIETTWNSFIRILQ--LVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSD 286

Query: 504 FMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNY-----Q 558
             GF     +    N N  +   S      +L  S +          N L+         
Sbjct: 287 VFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGH 346

Query: 559 LFSAVGMDLSDNLLHGTIPK--GLF-QLQGLEYLNLSFNFLDGQVPGLY--RLRSLRALD 613
           L     + L  N L   + K   +  Q++ L+ L++S N +            +SL +L+
Sbjct: 347 LTELETLILQMNQLK-ELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLN 405

Query: 614 LSHNSLTGQIPGNISSLQELTLLNLSYNSFS 644
           +S N LT  I   +     + +L+L  N   
Sbjct: 406 MSSNILTDTIFRCL--PPRIKVLDLHSNKIK 434

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 78.4 bits (193), Expect = 2e-15
 Identities = 43/204 (21%), Positives = 72/204 (35%), Gaps = 15/204 (7%)

Query: 88  NLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVP 147
            +                S +     + +        C   +S    LD S N     V 
Sbjct: 282 QVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVF 341

Query: 148 DAIMKLRNLRELILKGN-----PELGGVFPGWVGNFSMNLEKLDFSFNSF-CGEIPESLY 201
           +    L  L  LIL+ N      ++  +          +L++LD S NS    E      
Sbjct: 342 ENCGHLTELETLILQMNQLKELSKIAEMTTQMK-----SLQQLDISQNSVSYDEKKGDCS 396

Query: 202 YLKSLKHLDLEKNNLTGNVHD-FYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNS 260
           + KSL  L++  N LT  +       + VL+L SN+   ++P       +L  L + +N 
Sbjct: 397 WTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQ 455

Query: 261 VVGGIPTCI-ASLQALTHLNLSHN 283
            +  +P  I   L +L  + L  N
Sbjct: 456 -LKSVPDGIFDRLTSLQKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 42.5 bits (100), Expect = 4e-04
 Identities = 40/249 (16%), Positives = 76/249 (30%), Gaps = 21/249 (8%)

Query: 421 SLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKL 480
              IL+IS N IS      +  L  L I+  S N +             L+Y  ++ NKL
Sbjct: 22  KTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKL 81

Query: 481 SGNLPNWLFSFQAIQMMDFSTNKFMGFIPDGNFN-------FSLNFNK-SDIGRSMPAKS 532
              +         ++ +D S N F        F          L+            A  
Sbjct: 82  V-KIS--CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHL 138

Query: 533 FVLPRSMVIRISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLS 592
            +    +V+  +    +  E   ++   S   +  ++   H  +   +  +  LE  N+ 
Sbjct: 139 NISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIK 198

Query: 593 FN-------FLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQ---ELTLLNLSYNS 642
                    +    +  L     L  L L++   T      I  L     +   ++S   
Sbjct: 199 CVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVK 258

Query: 643 FSGFVPWKQ 651
             G + ++ 
Sbjct: 259 LQGQLDFRD 267

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  108 bits (271), Expect = 4e-25
 Identities = 78/417 (18%), Positives = 145/417 (34%), Gaps = 47/417 (11%)

Query: 108 LEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPEL 167
               V ++       +     L+ L +LD   +    +    I KL  L +LI   N  +
Sbjct: 20  FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDM--TGIEKLTGLTKLICTSN-NI 76

Query: 168 GGVFPGWVGNFSM--NLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQ 225
             +      + S   NL  L    N     +   +  L  L +L+ + N LT        
Sbjct: 77  TTL------DLSQNTNLTYLACDSNKL-TNLD--VTPLTKLTYLNCDTNKLTKLDVSQNP 127

Query: 226 SLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHL 285
            L  LN   N  +  +    +    LT L    N  +  +   +     LT L+ S N +
Sbjct: 128 LLTYLNCARNTLT-EID--VSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKI 182

Query: 286 NYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKIT 345
             E+   +   + L  L+   N+++  L   + Q  +   L  LD S N+ +    + +T
Sbjct: 183 T-ELD--VSQNKLLNRLNCDTNNITK-LD--LNQNIQ---LTFLDCSSNKLTE---IDVT 230

Query: 346 ELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNN 405
            L  L     S N L  E+   +  L+ L  +      L     +++    QL+      
Sbjct: 231 PLTQLTYFDCSVNPLT-ELD--VSTLSKLTTLHCIQTDLLE---IDLTHNTQLIYFQAEG 284

Query: 406 NNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAIT 465
                E+  ++     L +LD     I+    L L+    L  +  ++  L+  L+  ++
Sbjct: 285 CRKIKEL--DVTHNTQLYLLDCQAAGIT---ELDLSQNPKLVYLYLNNTELT-ELD--VS 336

Query: 466 KWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDGNFNFSLNFNKS 522
             T LK  S     +  +  + +    A+     +  + +    +   N SL    S
Sbjct: 337 HNTKLKSLSCVNAHIQ-DFSS-VGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVS 391

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 87.1 bits (216), Expect = 3e-18
 Identities = 77/467 (16%), Positives = 149/467 (31%), Gaps = 88/467 (18%)

Query: 181 NLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTG--NVHDFYQSLLVLNLGSNRFS 238
           N      +          S   L +L  LD   +++T    +      L  L   SN  +
Sbjct: 19  NFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTGIEKL-TGLTKLICTSNNIT 77

Query: 239 GTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEK 298
            TL     +  +LT L  D+N +   +   +  L  LT+LN   N L       +     
Sbjct: 78  -TLDLSQNT--NLTYLACDSNKLTN-LD--VTPLTKLTYLNCDTNKLT---KLDVSQNPL 128

Query: 299 LLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNN 358
           L  L+ + N L+    S   Q      L  LD   N+   ++   +T    L  L  S N
Sbjct: 129 LTYLNCARNTLTEIDVSHNTQ------LTELDCHLNKKITKLD--VTPQTQLTTLDCSFN 180

Query: 359 LLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDA 418
            +  E+   +     L  ++   N ++    L++    QL  L  ++N L+   + ++  
Sbjct: 181 KIT-ELD--VSQNKLLNRLNCDTNNITK---LDLNQNIQLTFLDCSSNKLT---EIDVTP 231

Query: 419 LDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARN 478
           L  L   D S N ++    L ++ L  L  +     +L   ++  +T  T L YF     
Sbjct: 232 LTQLTYFDCSVNPLT---ELDVSTLSKLTTLHCIQTDLL-EID--LTHNTQLIYFQAEGC 285

Query: 479 KLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRS 538
           +              I+ +D + N  +       +                         
Sbjct: 286 RK-------------IKELDVTHNTQL-------YLLDCQAAG----------------- 308

Query: 539 MVIRISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDG 598
                    I   +LS N +L     + L++  L   +   +     L+ L+     +  
Sbjct: 309 ---------ITELDLSQNPKLVY---LYLNNTELT-ELD--VSHNTKLKSLSCVNAHIQ- 352

Query: 599 QVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSG 645
               + ++ +L     +           +++      ++       G
Sbjct: 353 DFSSVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFG 399

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  105 bits (264), Expect = 7e-25
 Identities = 62/338 (18%), Positives = 108/338 (31%), Gaps = 73/338 (21%)

Query: 130 SGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSF 189
                LDL  NK   +       L+NL  LIL  N                 + K+    
Sbjct: 52  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINN----------------KISKIS--- 92

Query: 190 NSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAM 249
                  P +   L  L+ L L KN L               L                 
Sbjct: 93  -------PGAFAPLVKLERLYLSKNQLK-------------ELPEKMPK----------- 121

Query: 250 SLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVF--FEKLLLLDLSFN 307
           +L  L++  N +     +    L  +  + L  N L         F   +KL  + ++  
Sbjct: 122 TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT 181

Query: 308 DLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKI-TELKSLQALFLSNNLLIGEIPA 366
           +++  +P  +        L  L L  N+ + ++       L +L  L LS N  I  +  
Sbjct: 182 NITT-IPQGLP-----PSLTELHLDGNKIT-KVDAASLKGLNNLAKLGLSFN-SISAVDN 233

Query: 367 RI-GNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPE-------LDA 418
               N  +L+ + L++N L   +P  +     +  + ++NNN+S  I             
Sbjct: 234 GSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS-AIGSNDFCPPGYNTK 291

Query: 419 LDSLKILDISNNQIS-GEI-PLTLAGLKSLEIVDFSSN 454
             S   + + +N +   EI P T   +     V   + 
Sbjct: 292 KASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  102 bits (256), Expect = 6e-24
 Identities = 64/292 (21%), Positives = 96/292 (32%), Gaps = 33/292 (11%)

Query: 108 LEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGN--P 165
              L L +N  T      F  L  L TL L  NK   + P A   L  L  L L  N   
Sbjct: 54  TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 113

Query: 166 EL-GGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTG---NVH 221
           EL   +           L++L    N            L  +  ++L  N L        
Sbjct: 114 ELPEKMPK--------TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENG 165

Query: 222 DFY--QSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLN 279
            F   + L  + +     + T+P       SLT L LD N +       +  L  L  L 
Sbjct: 166 AFQGMKKLSYIRIADTNIT-TIPQGLPP--SLTELHLDGNKITKVDAASLKGLNNLAKLG 222

Query: 280 LSHNHLNYEISPR-LVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSG 338
           LS N ++  +    L     L  L L+ N L   +P  +A       + ++ L +N  S 
Sbjct: 223 LSFNSIS-AVDNGSLANTPHLRELHLNNNKLVK-VPGGLADHK---YIQVVYLHNNNISA 277

Query: 339 ------EIPLKITELKSLQALFLSNN-LLIGEIPARI-GNLTYLQVIDLSHN 382
                   P   T+  S   + L +N +   EI       +     + L + 
Sbjct: 278 IGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 88.5 bits (220), Expect = 3e-19
 Identities = 54/246 (21%), Positives = 98/246 (39%), Gaps = 21/246 (8%)

Query: 250 SLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPR-LVFFEKLLLLDLSFND 308
              +L L NN +         +L+ L  L L +N ++ +ISP       KL  L LS N 
Sbjct: 53  DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLYLSKNQ 111

Query: 309 LSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKI-TELKSLQALFLSNNLL-IGEIPA 366
           L   LP K+ +      L  L +  N  + ++   +   L  +  + L  N L    I  
Sbjct: 112 LKE-LPEKMPK-----TLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIEN 164

Query: 367 RI-GNLTYLQVIDLSHNMLSGSIPLNIVGCFQ-LLALIVNNNNLSGEIQPE-LDALDSLK 423
                +  L  I ++   ++ +IP    G    L  L ++ N ++ ++    L  L++L 
Sbjct: 165 GAFQGMKKLSYIRIADTNIT-TIP---QGLPPSLTELHLDGNKIT-KVDAASLKGLNNLA 219

Query: 424 ILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGN 483
            L +S N IS     +LA    L  +  ++N L   +   +     ++   +  N +S  
Sbjct: 220 KLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS-A 277

Query: 484 LPNWLF 489
           + +  F
Sbjct: 278 IGSNDF 283

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 85.1 bits (211), Expect = 5e-18
 Identities = 55/309 (17%), Positives = 104/309 (33%), Gaps = 35/309 (11%)

Query: 329 LDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARI-GNLTYLQVIDLSHNMLSGS 387
           +  S      ++P  +        L L NN  I EI      NL  L  + L +N +S  
Sbjct: 36  VQCSDLGLE-KVPKDLPP--DTALLDLQNNK-ITEIKDGDFKNLKNLHTLILINNKIS-K 90

Query: 388 IPLNI-VGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSL 446
           I         +L  L ++ N L  E+  ++    +L+ L +  N+I+        GL  +
Sbjct: 91  ISPGAFAPLVKLERLYLSKNQLK-ELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQM 147

Query: 447 EIVDFSSNNLSGSL--NDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKF 504
            +V+  +N L  S   N A      L Y  IA   ++  +P  L    ++  +    NK 
Sbjct: 148 IVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLPP--SLTELHLDGNKI 204

Query: 505 MGFIPDGNFN-----FSLNFNKSDIGRSMPAKSFV-LPRSMVIRISVTAIDTNELSFNYQ 558
              +   +         L  + + I  ++   S    P    + ++   +          
Sbjct: 205 -TKVDAASLKGLNNLAKLGLSFNSI-SAVDNGSLANTPHLRELHLNNNKLVKVPGGL-AD 261

Query: 559 LFSAVGMDLSDNLLHGTIPKGLF-------QLQGLEYLNLSFNFLDGQV--PGLYR-LRS 608
                 + L +N +   I    F       +      ++L  N +      P  +R +  
Sbjct: 262 HKYIQVVYLHNNNIS-AIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYV 320

Query: 609 LRALDLSHN 617
             A+ L + 
Sbjct: 321 RAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 73.9 bits (182), Expect = 3e-14
 Identities = 47/244 (19%), Positives = 85/244 (34%), Gaps = 23/244 (9%)

Query: 104 KLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKG 163
            L  LE L LS N     +         L+ L +  N+   V       L  +  + L  
Sbjct: 98  PLVKLERLYLSKNQLK-ELPE--KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGT 154

Query: 164 NP-ELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTG-NVH 221
           NP +  G+  G        L  +  +  +    IP+ L    SL  L L+ N +T  +  
Sbjct: 155 NPLKSSGIENGAFQGMK-KLSYIRIADTNI-TTIPQGL--PPSLTELHLDGNKITKVDAA 210

Query: 222 DF--YQSLLVLNLGSNRFSGTLPCFA-ASAMSLTVLKLDNNSVVGGIPTCIASLQALTHL 278
                 +L  L L  N  S  +   + A+   L  L L+NN +V  +P  +A  + +  +
Sbjct: 211 SLKGLNNLAKLGLSFNSIS-AVDNGSLANTPHLRELHLNNNKLVK-VPGGLADHKYIQVV 268

Query: 279 NLSHNHL----NYEISPRLVF--FEKLLLLDLSFNDLS-GPLPSKIAQTTEKAGLVLLDL 331
            L +N++    + +  P            + L  N +    +     +         + L
Sbjct: 269 YLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYV--RAAVQL 326

Query: 332 SHNR 335
            + +
Sbjct: 327 GNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 73.5 bits (181), Expect = 3e-14
 Identities = 51/255 (20%), Positives = 92/255 (36%), Gaps = 51/255 (20%)

Query: 421 SLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKL 480
              +LD+ NN+I+         LK+L  +   +N +S     A      L+   +++N+L
Sbjct: 53  DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 112

Query: 481 SGNLPNWLFSFQAIQMMDFSTNKFMGFIPDGNFN-------FSLNFNKSDIGRSMPAKSF 533
              LP  +     +Q +    N+    +    FN         L  N             
Sbjct: 113 K-ELPEKMPK--TLQELRVHENEI-TKVRKSVFNGLNQMIVVELGTN------------- 155

Query: 534 VLPRSMVIRISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSF 593
                    +  + I+         +     + ++D  +  TIP+GL     L  L+L  
Sbjct: 156 --------PLKSSGIENGAFQ---GMKKLSYIRIADTNIT-TIPQGLPP--SLTELHLDG 201

Query: 594 NFLDGQVPG--LYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVPWKQ 651
           N +  +V    L  L +L  L LS NS++    G++++   L  L+L+ N          
Sbjct: 202 NKIT-KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL-------- 252

Query: 652 GYQKFPGAFAGNPNL 666
              K PG  A +  +
Sbjct: 253 --VKVPGGLADHKYI 265

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  104 bits (261), Expect = 2e-24
 Identities = 62/337 (18%), Positives = 111/337 (32%), Gaps = 72/337 (21%)

Query: 130 SGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSF 189
                LDL  N    +  D    L++L  L+L  N                 + K+    
Sbjct: 54  PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNN----------------KISKIH--- 94

Query: 190 NSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAM 249
                   ++   L+ L+ L + KN+L               +  N  S           
Sbjct: 95  -------EKAFSPLRKLQKLYISKNHLV-------------EIPPNLPS----------- 123

Query: 250 SLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFE-KLLLLDLSFND 308
           SL  L++ +N +        + L+ +  + +  N L         F   KL  L +S   
Sbjct: 124 SLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAK 183

Query: 309 LSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKI-TELKSLQALFLSNNLLIGEIPAR 367
           L+G +P  + +T  +     L L HN+    I L+       L  L L +N  I  I   
Sbjct: 184 LTG-IPKDLPETLNE-----LHLDHNKIQ-AIELEDLLRYSKLYRLGLGHN-QIRMIENG 235

Query: 368 I-GNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPE-------LDAL 419
               L  L+ + L +N LS  +P  +     L  + ++ NN++ ++              
Sbjct: 236 SLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKR 293

Query: 420 DSLKILDISNNQISGEI--PLTLAGLKSLEIVDFSSN 454
                + + NN +      P T   +     + F + 
Sbjct: 294 AYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 92.4 bits (230), Expect = 2e-20
 Identities = 66/350 (18%), Positives = 109/350 (31%), Gaps = 77/350 (22%)

Query: 329 LDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPAR-IGNLTYLQVIDLSHNMLSGS 387
           +  S       +P +I+       L L NN  I E+       L +L  + L +N +S  
Sbjct: 38  VQCSDLGLK-AVPKEIS--PDTTLLDLQNND-ISELRKDDFKGLQHLYALVLVNNKIS-K 92

Query: 388 IPLNI-VGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSL 446
           I         +L  L ++ N+L  EI P L    SL  L I +N+I        +GL+++
Sbjct: 93  IHEKAFSPLRKLQKLYISKNHLV-EIPPNL--PSSLVELRIHDNRIRKVPKGVFSGLRNM 149

Query: 447 EIVDFSSNNL-SGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFM 505
             ++   N L +            L Y  I+  KL+  +P  L     +  +    NK  
Sbjct: 150 NCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT-GIPKDLPE--TLNELHLDHNKIQ 206

Query: 506 GFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVGM 565
             I   +                                             +      +
Sbjct: 207 -AIELEDLL-------------------------------------------RYSKLYRL 222

Query: 566 DLSDNLLHGTIPKGLFQ-LQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIP 624
            L  N +   I  G    L  L  L+L  N L     GL  L+ L+ + L  N++T ++ 
Sbjct: 223 GLGHNQIR-MIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNIT-KVG 280

Query: 625 GNI-------SSLQELTLLNLSYNSFSGF-VPWKQGYQKFPGAFAGNPNL 666
            N                ++L  N    + V         P  F    + 
Sbjct: 281 VNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQ--------PATFRCVTDR 322

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 88.2 bits (219), Expect = 5e-19
 Identities = 68/397 (17%), Positives = 125/397 (31%), Gaps = 87/397 (21%)

Query: 229 VLNLGSNRFSGTLPCFAASAMSLTVLKLDNN---SVVGGIPTCIASLQALTHLNLSHNHL 285
           + +L S   + +  C       L V++  +    +V   I          T L+L +N +
Sbjct: 13  IPDLDSLPPTYSAMCPFGCHCHLRVVQCSDLGLKAVPKEISP------DTTLLDLQNNDI 66

Query: 286 NYEISPR-LVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKI 344
           + E+        + L  L L  N +S  +  K      K  L  L +S N    EIP  +
Sbjct: 67  S-ELRKDDFKGLQHLYALVLVNNKISK-IHEKAFSPLRK--LQKLYISKNHLV-EIPPNL 121

Query: 345 TELKSLQALFLSNNLLIGEIPARI-GNLTYLQVIDLSHNML-SGSIPLNIVGCFQLLALI 402
               SL  L + +N  I ++P  +   L  +  I++  N L +           +L  L 
Sbjct: 122 --PSSLVELRIHDNR-IRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLR 178

Query: 403 VNNNNLSGEIQPELDALDSLKILDISNNQISGEIP-LTLAGLKSLEIVDFSSNNLSGSLN 461
           ++   L+  I    D  ++L  L + +N+I   I    L     L  +    N +    N
Sbjct: 179 ISEAKLT-GIPK--DLPETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRMIEN 234

Query: 462 DAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDGNFNFSLNFNK 521
            +++    L+   +  NKLS  +P  L   + +Q++   TN                   
Sbjct: 235 GSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNI----------------- 276

Query: 522 SDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVGMDLSDNLL-HGTIPKGL 580
                 +    F      V R     I                  L +N + +  +    
Sbjct: 277 ----TKVGVNDFCPVGFGVKRAYYNGIS-----------------LFNNPVPYWEVQPAT 315

Query: 581 FQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHN 617
           F+                       +    A+   + 
Sbjct: 316 FR----------------------CVTDRLAIQFGNY 330

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  102 bits (255), Expect = 6e-24
 Identities = 56/257 (21%), Positives = 109/257 (42%), Gaps = 18/257 (7%)

Query: 250 SLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFF--EKLLLLDLSFN 307
           S T L+L++N +          L  LT L+LS N L+++       F    L  LDLSFN
Sbjct: 29  SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88

Query: 308 DLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKI-TELKSLQALFLSNNLLIGEIPA 366
            +   + S      +   L  LD  H+         +   L++L  L +S+         
Sbjct: 89  GVIT-MSSNFLGLEQ---LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH-TRVAFN 143

Query: 367 RI-GNLTYLQVIDLSHNMLSGSIPLNI-VGCFQLLALIVNNNNLSGEIQPE-LDALDSLK 423
            I   L+ L+V+ ++ N    +   +I      L  L ++   L  ++ P   ++L SL+
Sbjct: 144 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQ 202

Query: 424 ILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITK-WTNLKYFSIARNKLS- 481
           +L++S+N            L SL+++D+S N++  S    +    ++L + ++ +N  + 
Sbjct: 203 VLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 262

Query: 482 ----GNLPNWLFSFQAI 494
                +   W+   + +
Sbjct: 263 TCEHQSFLQWIKDQRQL 279

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 95.1 bits (237), Expect = 1e-21
 Identities = 69/287 (24%), Positives = 102/287 (35%), Gaps = 64/287 (22%)

Query: 108 LEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNK--FVGVVPDAIMKLRNLRELILKGNP 165
              L L SN         F  L+ L  L LS N   F G    +     +L+ L L  N 
Sbjct: 30  ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG 89

Query: 166 --ELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPES--LYYLKSLKHLDLEKNNLTGNVH 221
              +   F G        LE LDF  ++   ++ E      L++L +LD+   +      
Sbjct: 90  VITMSSNFLG-----LEQLEHLDFQHSNL-KQMSEFSVFLSLRNLIYLDISHTHTR---- 139

Query: 222 DFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCI-ASLQALTHLNL 280
                       +  F+G L        SL VLK+  NS        I   L+ LT L+L
Sbjct: 140 ---------VAFNGIFNG-LS-------SLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 182

Query: 281 SHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEI 340
           S   L  ++SP             +FN LS               L +L++SHN F    
Sbjct: 183 SQCQLE-QLSPT------------AFNSLS--------------SLQVLNMSHNNFFSLD 215

Query: 341 PLKITELKSLQALFLSNNLLIGEIPARI--GNLTYLQVIDLSHNMLS 385
                 L SLQ L  S N ++     +      + L  ++L+ N  +
Sbjct: 216 TFPYKCLNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 78.1 bits (193), Expect = 7e-16
 Identities = 51/301 (16%), Positives = 101/301 (33%), Gaps = 62/301 (20%)

Query: 329 LDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARI-GNLTYLQVIDLSHNMLS-- 385
           +  +    +  +P  I    S   L L +N  +  +P  +   LT L  + LS N LS  
Sbjct: 12  IRCNSKGLT-SVPTGI--PSSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSSNGLSFK 67

Query: 386 GSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPL-TLAGLK 444
           G    +  G   L  L ++ N +   +      L+ L+ LD  ++ +           L+
Sbjct: 68  GCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR 126

Query: 445 SLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFS-FQAIQMMDFSTNK 503
           +L  +D S  +   + N      ++L+   +A N    N    +F+  + +  +D S  +
Sbjct: 127 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 186

Query: 504 FMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAV 563
                                   +   +F                         L S  
Sbjct: 187 L---------------------EQLSPTAFN-----------------------SLSSLQ 202

Query: 564 GMDLSDNLLHGTIPKGLFQ-LQGLEYLNLSFNFL----DGQVPGLYRLRSLRALDLSHNS 618
            +++S N    ++    ++ L  L+ L+ S N +      ++       SL  L+L+ N 
Sbjct: 203 VLNMSHNNFF-SLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF--PSSLAFLNLTQND 259

Query: 619 L 619
            
Sbjct: 260 F 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 77.0 bits (190), Expect = 2e-15
 Identities = 46/196 (23%), Positives = 84/196 (42%), Gaps = 8/196 (4%)

Query: 324 AGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLL-IGEIPARI-GNLTYLQVIDLSH 381
           +    L+L  N+          +L  L  L LS+N L      ++     T L+ +DLS 
Sbjct: 28  SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87

Query: 382 NMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPE--LDALDSLKILDISNNQISGEIPLT 439
           N +  ++  N +G  QL  L   ++NL  ++       +L +L  LDIS+          
Sbjct: 88  NGVI-TMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTRVAFNGI 145

Query: 440 LAGLKSLEIVDFSSNNLSGSLN-DAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMD 498
             GL SLE++  + N+   +   D  T+  NL +  +++ +L    P    S  ++Q+++
Sbjct: 146 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 205

Query: 499 FSTNKFMGFIPDGNFN 514
            S N F   +    + 
Sbjct: 206 MSHNNFF-SLDTFPYK 220

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 73.5 bits (181), Expect = 3e-14
 Identities = 45/234 (19%), Positives = 82/234 (35%), Gaps = 36/234 (15%)

Query: 421 SLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLS--GSLNDAITKWTNLKYFSIARN 478
           S   L++ +N++          L  L  +  SSN LS  G  + +    T+LKY  ++ N
Sbjct: 29  SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88

Query: 479 KLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDGNFN-----FSLNFNKSDIGRSMPAKSF 533
            +   + +     + ++ +DF  +          F        L+ + +   R      F
Sbjct: 89  GVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT-RVAFNGIF 146

Query: 534 VLPRSMVIRISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGTIPKGLFQ-LQGLEYLNLS 592
                                    L S   + ++ N         +F  L+ L +L+LS
Sbjct: 147 -----------------------NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 183

Query: 593 FNFLDGQVPG--LYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFS 644
              L+ Q+       L SL+ L++SHN+           L  L +L+ S N   
Sbjct: 184 QCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 236

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 73.1 bits (180), Expect = 3e-14
 Identities = 38/163 (23%), Positives = 51/163 (31%), Gaps = 10/163 (6%)

Query: 104 KLSFLEFLVLSSNAFTGRISTC-FGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILK 162
            L  LE L    +          F  L  L  LD+S+             L +L  L + 
Sbjct: 99  GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMA 158

Query: 163 GNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPE-SLYYLKSLKHLDLEKNNLTG--- 218
           GN       P        NL  LD S      ++   +   L SL+ L++  NN      
Sbjct: 159 GNSFQENFLPDIFTELR-NLTFLDLSQCQL-EQLSPTAFNSLSSLQVLNMSHNNFFSLDT 216

Query: 219 NVHDFYQSLLVLNLGSNRFSGTLP--CFAASAMSLTVLKLDNN 259
             +    SL VL+   N    T           SL  L L  N
Sbjct: 217 FPYKCLNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNLTQN 258

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 52.7 bits (127), Expect = 2e-07
 Identities = 28/103 (27%), Positives = 41/103 (39%), Gaps = 11/103 (10%)

Query: 566 DLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLD--GQVPGLYRLRSLRALDLSHNSLTGQI 623
           DLS N +  T+      L+ LE+L+   + L    +      LR+L  LD+SH       
Sbjct: 84  DLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF 142

Query: 624 PGNISSLQELTLLNLSYNSFSGFVPWKQGYQKFPGAFAGNPNL 666
            G  + L  L +L ++ NSF             P  F    NL
Sbjct: 143 NGIFNGLSSLEVLKMAGNSFQENFL--------PDIFTELRNL 177

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  105 bits (262), Expect = 1e-23
 Identities = 62/303 (20%), Positives = 103/303 (33%), Gaps = 43/303 (14%)

Query: 230 LNLGSNRFSGTLPCFAASAMS-------LTVLKLDNNSVVGGIPTCIASLQALTHLNLSH 282
            +L  N F  T+    A   S         +   + N  V  +  C+  +   + L L+ 
Sbjct: 11  FSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECL--INQFSELQLNR 68

Query: 283 NHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPL 342
            +L+  +   L    ++ +L+++ N L   LP   A       L  LD   NR S  +P 
Sbjct: 69  LNLS-SLPDNL--PPQITVLEITQNALI-SLPELPAS------LEYLDACDNRLS-TLP- 116

Query: 343 KITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALI 402
                 SL+ L + NN L   +P     L Y+   +  +N L+  +P        L  L 
Sbjct: 117 --ELPASLKHLDVDNNQLT-MLPELPALLEYI---NADNNQLT-MLPELPT---SLEVLS 166

Query: 403 VNNNNLSGEIQPEL-DALDSLKILDISNNQISGEIPLTLAGLKSLE----IVDFSSNNLS 457
           V NN L+      L +  +SL+ LD+S N +   +P         E          N ++
Sbjct: 167 VRNNQLT-----FLPELPESLEALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRIT 220

Query: 458 GSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDGNFNFSL 517
             + + I          +  N LS  +   L    A          F       N     
Sbjct: 221 -HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRP 279

Query: 518 NFN 520
             +
Sbjct: 280 LAD 282

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  101 bits (252), Expect = 2e-22
 Identities = 61/316 (19%), Positives = 108/316 (34%), Gaps = 36/316 (11%)

Query: 195 EIPESLYYLKSLKHLDLEKNNLTGNVHD-FYQSLLVLNLGSNRFSGTLPCFAASAMSLTV 253
           +   +    +        +N     + +        L L     S +LP        +TV
Sbjct: 28  DYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLS-SLPDNLPP--QITV 84

Query: 254 LKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPL 313
           L++  N+++  +P   ASL+   +L+   N L+  +         L  LD+  N L+  L
Sbjct: 85  LEITQNALIS-LPELPASLE---YLDACDNRLS-TLPELP---ASLKHLDVDNNQLTM-L 135

Query: 314 PSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTY 373
           P   A       L  ++  +N+ +  +P       SL+ L + NN L   +P    +L  
Sbjct: 136 PELPAL------LEYINADNNQLT-MLP---ELPTSLEVLSVRNNQL-TFLPELPESLEA 184

Query: 374 LQVIDLSHNMLSGSIPLNIVGCFQL----LALIVNNNNLSGEIQPELDALDSLKILDISN 429
           L   D+S N+L  S+P   V         +      N ++  I   + +LD    + + +
Sbjct: 185 L---DVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILED 239

Query: 430 NQISGEIPLTLAGLKSLEIVDFSSNNLS---GSLNDAITKWTNLKYFSIARNKLSGNLPN 486
           N +S  I  +L+   +           S   G  N       +        NK S     
Sbjct: 240 NPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQI 299

Query: 487 WLFSFQAIQMMDFSTN 502
           W           FS  
Sbjct: 300 WHAFEHEEHANTFSAF 315

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 98.9 bits (246), Expect = 1e-21
 Identities = 63/335 (18%), Positives = 106/335 (31%), Gaps = 36/335 (10%)

Query: 134 TLDLSYNKFVGVVPDAIMKLRNLRELILKGNP--ELGGVFPGWVGNFSMNLEKLDFSFNS 191
           + +  YN   G   D         +  L G    E   +    + N      +L  +  +
Sbjct: 14  SQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLIN---QFSELQLNRLN 70

Query: 192 FCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSL 251
               +P++L     +  L++ +N L  ++ +   SL  L+   NR S TLP       SL
Sbjct: 71  LS-SLPDNL--PPQITVLEITQNALI-SLPELPASLEYLDACDNRLS-TLP---ELPASL 122

Query: 252 TVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSG 311
             L +DNN +   +P   A L+   ++N  +N L   +         L +L +  N L+ 
Sbjct: 123 KHLDVDNNQLTM-LPELPALLE---YINADNNQLT-MLPELP---TSLEVLSVRNNQLTF 174

Query: 312 PLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQ----ALFLSNNLLIGEIPAR 367
            LP           L  LD+S N     +P         +          N  I  IP  
Sbjct: 175 -LPELPES------LEALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENR-ITHIPEN 225

Query: 368 IGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDI 427
           I +L     I L  N LS S     +                  +           + D 
Sbjct: 226 ILSLDPTCTIILEDNPLS-SRIRESLSQQTAQPDYHGPRIYF-SMSDGQQNTLHRPLADA 283

Query: 428 SNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLND 462
                       ++ +      +  +N  S  L+ 
Sbjct: 284 VTAWFPENKQSDVSQIWHAFEHEEHANTFSAFLDR 318

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 84.3 bits (208), Expect = 4e-17
 Identities = 58/321 (18%), Positives = 97/321 (30%), Gaps = 75/321 (23%)

Query: 100 PRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLREL 159
            + C ++    L L+    +  +         +  L+++ N               L  L
Sbjct: 53  LKECLINQFSELQLNRLNLS-SLPDNLP--PQITVLEITQNA--------------LISL 95

Query: 160 ILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGN 219
                PEL             +LE LD   N     +PE      SLKHLD++ N LT  
Sbjct: 96  -----PELPA-----------SLEYLDACDNRL-STLPEL---PASLKHLDVDNNQLT-M 134

Query: 220 VHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLN 279
           + +    L  +N  +N+ +  LP                               +L  L+
Sbjct: 135 LPELPALLEYINADNNQLT-MLP---------------------------ELPTSLEVLS 166

Query: 280 LSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTE-KAGLVLLDLSHNRFSG 338
           + +N L   +       E L  LD+S N L   LP+   +    +   +      NR + 
Sbjct: 167 VRNNQLT-FLPELP---ESLEALDVSTNLLES-LPAVPVRNHHSEETEIFFRCRENRIT- 220

Query: 339 EIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQL 398
            IP  I  L     + L +N L   I   +   T     D     +  S+          
Sbjct: 221 HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQP--DYHGPRIYFSMSDGQQNTLHR 278

Query: 399 LALIVNNNNLSGEIQPELDAL 419
                         Q ++  +
Sbjct: 279 PLADAVTAWFPENKQSDVSQI 299

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 80.0 bits (197), Expect = 8e-16
 Identities = 60/328 (18%), Positives = 108/328 (32%), Gaps = 69/328 (21%)

Query: 300 LLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNL 359
           L  +  +N +SG      +   +     L   + N     +      +     L L+   
Sbjct: 13  LSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLK--ECLINQFSELQLNRLN 70

Query: 360 LIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPEL-DA 418
           L   +P  +     + V++++ N L  S+P        L  L   +N LS      L + 
Sbjct: 71  L-SSLPDNLP--PQITVLEITQNALI-SLPELPA---SLEYLDACDNRLS-----TLPEL 118

Query: 419 LDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARN 478
             SLK LD+ NNQ++  +P   A L+ +   +  +N L+  L +  T   +L+  S+  N
Sbjct: 119 PASLKHLDVDNNQLT-MLPELPALLEYI---NADNNQLT-MLPELPT---SLEVLSVRNN 170

Query: 479 KLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRS 538
           +L+  LP    S   ++ +D STN                        S+PA       S
Sbjct: 171 QLTF-LPELPES---LEALDVSTNLL---------------------ESLPAVPVRNHHS 205

Query: 539 MVIRISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDG 598
               I                         +N +   IP+ +  L     + L  N L  
Sbjct: 206 EETEIFF--------------------RCRENRIT-HIPENILSLDPTCTIILEDNPLSS 244

Query: 599 QVPGLYRLRSLRALDLSHNSLTGQIPGN 626
           ++      ++ +              G 
Sbjct: 245 RIRESLSQQTAQPDYHGPRIYFSMSDGQ 272

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 68.5 bits (167), Expect = 4e-12
 Identities = 55/314 (17%), Positives = 106/314 (33%), Gaps = 58/314 (18%)

Query: 340 IPLKITELKSLQALFLSNNL--LIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQ 397
           I L I    SL      N +     +  +         +   + N     +   ++   Q
Sbjct: 3   IMLPINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLIN--Q 60

Query: 398 LLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLS 457
              L +N  NLS  +   L     + +L+I+ N +   +P   A L+ L+      N LS
Sbjct: 61  FSELQLNRLNLS-SLPDNL--PPQITVLEITQNALI-SLPELPASLEYLDA---CDNRLS 113

Query: 458 GSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDGNFN--- 514
            +L +      +LK+  +  N+L+  LP        ++ ++   N+    +P+   +   
Sbjct: 114 -TLPELPA---SLKHLDVDNNQLT-MLPE---LPALLEYINADNNQL-TMLPELPTSLEV 164

Query: 515 FSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVGMDLSDNLLHG 574
            S+  N+      +P     LP S+                         +D+S NLL  
Sbjct: 165 LSVRNNQL---TFLPE----LPESLEA-----------------------LDVSTNLLE- 193

Query: 575 TIPKGLFQLQGLE----YLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNISSL 630
           ++P    +    E    +     N +      +  L     + L  N L+ +I  ++S  
Sbjct: 194 SLPAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253

Query: 631 QELTLLNLSYNSFS 644
                 +     FS
Sbjct: 254 TAQPDYHGPRIYFS 267

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 66.9 bits (163), Expect = 1e-11
 Identities = 59/335 (17%), Positives = 107/335 (31%), Gaps = 63/335 (18%)

Query: 364 IPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQ----LLALIVNNNNLSGEIQPELDAL 419
           I   I N   L   +  +N +S     +    +           N N     ++  L  +
Sbjct: 3   IMLPINNNFSLS-QNSFYNTIS-GTYADYFSAWDKWEKQALPGENRNEAVSLLKECL--I 58

Query: 420 DSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNK 479
           +    L ++   +S  +P  L     + +++ + N L  SL +      +L+Y     N+
Sbjct: 59  NQFSELQLNRLNLS-SLPDNL--PPQITVLEITQNALI-SLPELPA---SLEYLDACDNR 111

Query: 480 LSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDGNFN---FSLNFNKSDIGRSMPAKSFVLP 536
           LS  LP       +++ +D   N+    +P+        + + N+      +P       
Sbjct: 112 LS-TLPE---LPASLKHLDVDNNQLT-MLPELPALLEYINADNNQL---TMLPE------ 157

Query: 537 RSMVIRISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFL 596
                                   S   + + +N L   +P+     + LE L++S N L
Sbjct: 158 ---------------------LPTSLEVLSVRNNQL-TFLPE---LPESLEALDVSTNLL 192

Query: 597 DGQVPGLYRLRSLR----ALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVPWKQG 652
           +       R               N +T  IP NI SL     + L  N  S     +  
Sbjct: 193 ESLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSR-IRESL 250

Query: 653 YQKFPGAFAGNPNLCLESSHGECNRTSLPLVPGKT 687
            Q+        P +    S G+ N    PL    T
Sbjct: 251 SQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVT 285

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 56.1 bits (135), Expect = 3e-08
 Identities = 49/257 (19%), Positives = 82/257 (31%), Gaps = 70/257 (27%)

Query: 387 SIPLNIVGCFQLLALIVNNN--NLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLK 444
           SI L I   F L      N       +     D  +   +   + N+    +   L  + 
Sbjct: 2   SIMLPINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECL--IN 59

Query: 445 SLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKF 504
               +  +  NLS SL D +     +    I +N L  +LP       +++ +D   N+ 
Sbjct: 60  QFSELQLNRLNLS-SLPDNLPP--QITVLEITQNALI-SLPE---LPASLEYLDACDNRL 112

Query: 505 MGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVG 564
                                 ++P                               S   
Sbjct: 113 ---------------------STLPE---------------------------LPASLKH 124

Query: 565 MDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIP 624
           +D+ +N L   +P+       LEY+N   N L   +P L    SL  L + +N LT  +P
Sbjct: 125 LDVDNNQLT-MLPE---LPALLEYINADNNQL-TMLPEL--PTSLEVLSVRNNQLT-FLP 176

Query: 625 GNISSLQELTLLNLSYN 641
               SL+    L++S N
Sbjct: 177 ELPESLEA---LDVSTN 190

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  103 bits (258), Expect = 2e-23
 Identities = 80/422 (18%), Positives = 144/422 (34%), Gaps = 71/422 (16%)

Query: 108 LEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVP-DAIMKLRNLRELILKGNP- 165
           + ++ LS N+      T F  L  L+ L +       V+  +    L +L  L L  N  
Sbjct: 32  VNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF 91

Query: 166 -EL-GGVFPGWVGNFSMNLEKLDFSFNSFCGEI--PESLYYLKSLKHLDLEKNNLT---- 217
            +L  G F G       NLE L  +  +  G +        L SL+ L L  NN+     
Sbjct: 92  LQLETGAFNGLA-----NLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQP 146

Query: 218 GNVHDFYQSLLVLNLGSNRFSGTLPC---FAASAMSLTVLKLDNN--------SVVGGIP 266
            +     +   VL+L  N+   ++             T+L+L +          +     
Sbjct: 147 ASFFLNMRRFHVLDLTFNKVK-SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKC 205

Query: 267 TCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGL 326
                  ++T L+LS N      S    FF+ +    +    LS                
Sbjct: 206 GNPFKNTSITTLDLSGNGFK--ESMAKRFFDAIAGTKIQSLILSNS------------YN 251

Query: 327 VLLDLSHNRFSGEIPLKITELK--SLQALFLSNNLLIGEIPARI-GNLTYLQVIDLSHNM 383
           +     H  F          L+   ++   LS +  I  +   +  + T L+ + L+ N 
Sbjct: 252 MGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSK-IFALLKSVFSHFTDLEQLTLAQNE 310

Query: 384 LSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGL 443
           ++  I       F                      L  L  L++S N +          L
Sbjct: 311 IN-KID---DNAF--------------------WGLTHLLKLNLSQNFLGSIDSRMFENL 346

Query: 444 KSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLF-SFQAIQMMDFSTN 502
             LE++D S N++    + +     NLK  ++  N+L  ++P+ +F    ++Q +   TN
Sbjct: 347 DKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 405

Query: 503 KF 504
            +
Sbjct: 406 PW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  101 bits (254), Expect = 6e-23
 Identities = 70/357 (19%), Positives = 120/357 (33%), Gaps = 37/357 (10%)

Query: 329 LDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARI-GNLTYLQVIDLSHNMLSGS 387
           +DLS N  +       + L+ LQ L +        I       L+ L ++ L +N     
Sbjct: 35  VDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFL-Q 93

Query: 388 IPLNI-VGCFQLLALIVNNNNLSGEIQPE--LDALDSLKILDISNNQISGEIPLTL-AGL 443
           +      G   L  L +   NL G +        L SL++L + +N I    P +    +
Sbjct: 94  LETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNM 153

Query: 444 KSLEIVDFSSNNLSGSLNDAITKWT----------NLKYFSIARNKLSGNLPNWLFSFQA 493
           +   ++D + N +     + +  +           ++    +    L        F   +
Sbjct: 154 RRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTS 213

Query: 494 IQMMDFSTNKFMGFIPDGNFNFSLNFNK--SDIGRSMPAKSFVLPRSMVIRISVTAIDTN 551
           I  +D S N F        F  ++   K  S I  +          +             
Sbjct: 214 ITTLDLSGNGF-KESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGL 272

Query: 552 ELSFNYQLFSAVGMDLSDNLLHGTIPKGLFQ-LQGLEYLNLSFNFLDGQVPG-LYRLRSL 609
           E S           DLS + +   + K +F     LE L L+ N ++       + L  L
Sbjct: 273 EASGVKTC------DLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHL 325

Query: 610 RALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVPWKQGYQKFPGAFAGNPNL 666
             L+LS N L         +L +L +L+LSYN     +           +F G PNL
Sbjct: 326 LKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRA-LG--------DQSFLGLPNL 373

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 99.0 bits (247), Expect = 4e-22
 Identities = 85/406 (20%), Positives = 140/406 (34%), Gaps = 41/406 (10%)

Query: 250 SLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVF--FEKLLLLDLSFN 307
            +  + L  NS+     T  + LQ L  L +        I     F     L++L L +N
Sbjct: 31  HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNN-TFRGLSSLIILKLDYN 89

Query: 308 DLSGPLPSKIAQTTEKAGLVLLDLSHNRF-SGEIPLKI-TELKSLQALFLSNNLLIGEIP 365
                L +          L +L L+        +       L SL+ L L +N +    P
Sbjct: 90  QFLQ-LETGAFNGLAN--LEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQP 146

Query: 366 ARI-GNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKI 424
           A    N+    V+DL+ N +  SI    +  FQ     +               L S+ +
Sbjct: 147 ASFFLNMRRFHVLDLTFNKVK-SICEEDLLNFQGKHFTLLR-------------LSSITL 192

Query: 425 LDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNL 484
            D++   +  E         S+  +D S N    S+                    S N+
Sbjct: 193 QDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNM 252

Query: 485 PNWLFSFQAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFV-LPRSMVIRI 543
            +   SF      D     F G    G     L+ +K     ++    F        + +
Sbjct: 253 GS---SFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKI---FALLKSVFSHFTDLEQLTL 306

Query: 544 S---VTAIDTNELSFNYQLFSAVGMDLSDNLLHGTIPKGLFQ-LQGLEYLNLSFNFLDGQ 599
           +   +  ID N  +F + L   + ++LS N L G+I   +F+ L  LE L+LS+N +   
Sbjct: 307 AQNEINKIDDN--AF-WGLTHLLKLNLSQNFL-GSIDSRMFENLDKLEVLDLSYNHI-RA 361

Query: 600 VPG--LYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSF 643
           +       L +L+ L L  N L     G    L  L  + L  N +
Sbjct: 362 LGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 42.8 bits (101), Expect = 3e-04
 Identities = 34/213 (15%), Positives = 65/213 (30%), Gaps = 40/213 (18%)

Query: 468 TNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDGNFN-------FSLNFN 520
            ++ Y  ++ N ++          Q +Q +          I +  F          L++N
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 521 KSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGT-IPKG 579
           +      +   +F                         L +   + L+   L G  +   
Sbjct: 90  Q---FLQLETGAFN-----------------------GLANLEVLTLTQCNLDGAVLSGN 123

Query: 580 LFQ-LQGLEYLNLSFNFLDGQVPG--LYRLRSLRALDLSHNSLTGQIPGNISSLQ--ELT 634
            F+ L  LE L L  N +    P      +R    LDL+ N +      ++ + Q    T
Sbjct: 124 FFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFT 183

Query: 635 LLNLSYNSFSGFVPWKQGYQKFPGAFAGNPNLC 667
           LL LS  +    +       +  G    N ++ 
Sbjct: 184 LLRLSSITLQ-DMNEYWLGWEKCGNPFKNTSIT 215

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 42.8 bits (101), Expect = 3e-04
 Identities = 31/164 (18%), Positives = 50/164 (30%), Gaps = 20/164 (12%)

Query: 16  KLQMLPLLLFLLLLCSNPSESLELNLEDKASLLLFKSLVQDPTQKLSSWVGSNCTNWTGV 75
             +      F   +     +SL L+           +  +DP     ++ G   +     
Sbjct: 223 GFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDN--FTFKGLEASGVKTC 280

Query: 76  ACNF------------QTGHVVSINLTD---TSLSGQVHPRLCKLSFLEFLVLSSNAFTG 120
             +                 +  + L       +          L+ L  L LS N    
Sbjct: 281 DLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNA---FWGLTHLLKLNLSQNFLGS 337

Query: 121 RISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGN 164
             S  F  L  L+ LDLSYN    +   + + L NL+EL L  N
Sbjct: 338 IDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTN 381

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  103 bits (258), Expect = 4e-23
 Identities = 95/526 (18%), Positives = 171/526 (32%), Gaps = 84/526 (15%)

Query: 132 LKTLDLSYNKFVGVVPDAIMKLRNLRELILKGN-----PELGGVFPGWVGNFSMNLEKLD 186
            K L LS N    +    I  L  LR L L  N          VF      F+ +LE LD
Sbjct: 54  TKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDF--HVF-----LFNQDLEYLD 106

Query: 187 FSFNSFCGEIPESLYYLKSLKHLDLEKNNLT----GNVHDFYQSLLVLNLGSNRF-SGTL 241
            S N     I      + SL+HLDL  N+               L  L L + +F    L
Sbjct: 107 VSHNRL-QNISCCP--MASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDL 163

Query: 242 PCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLL 301
              A   +S  +L L +  + GG    +      T L+L  +  +       +    L  
Sbjct: 164 LPVAHLHLSCILLDLVSYHIKGGETESLQIPN-TTVLHLVFHPNSLFSVQVNMSVNALGH 222

Query: 302 LDLSFNDLS----GPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSN 357
           L LS   L+      L + +++ T    L+ + L H   + +  +K+   +      +  
Sbjct: 223 LQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKL--FQFFWPRPVEY 280

Query: 358 NLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELD 417
                     I NLT  + ID      S +   +      L+   V N       +    
Sbjct: 281 L--------NIYNLTITERIDREEFTYSETALKS------LMIEHVKNQVFLFSKEALYS 326

Query: 418 ALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIAR 477
               + I  +S +       +      S   ++F+ N  + S+    +    L+   + R
Sbjct: 327 VFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQR 386

Query: 478 NKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPR 537
           N L  N        + +  ++              ++ +                     
Sbjct: 387 NGLK-NFFKVALMTKNMSSLETLDVSLNSL-NSHAYDRT----------------CAWAE 428

Query: 538 SMVIRISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLD 597
           S+++                       ++LS N+L G++ + L     ++ L+L  N + 
Sbjct: 429 SILV-----------------------LNLSSNMLTGSVFRCL--PPKVKVLDLHNNRIM 463

Query: 598 GQVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSF 643
                +  L++L+ L+++ N L     G    L  L  + L  N +
Sbjct: 464 SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPW 509

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 98.4 bits (245), Expect = 1e-21
 Identities = 78/421 (18%), Positives = 151/421 (35%), Gaps = 36/421 (8%)

Query: 108 LEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPEL 167
            + L LS N+ +         LS L+ L LS+N+   +     +  ++L  L +  N  L
Sbjct: 54  TKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN-RL 112

Query: 168 GGVFPGWVGNFSMNLEKLDFSFNSF-CGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQS 226
             +    +     +L  LD SFN F    + +    L  L  L L               
Sbjct: 113 QNISCCPMA----SLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAH 168

Query: 227 L----LVLNLGSNRFS-GTLPCFAASAMSLTVLKLDNNSV----VGGIPTCIASLQALTH 277
           L    ++L+L S     G          ++  L    NS+    V      +  LQ L++
Sbjct: 169 LHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQ-LSN 227

Query: 278 LNLSHNHLNYEISPRLVFFEKLLLLDLSFN--DLSGPLPSKIAQTTEKAGLVLLDLSHNR 335
           + L+  +    ++          LL+++    + +     K+ Q      +  L++ +  
Sbjct: 228 IKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLT 287

Query: 336 FSGEIPLKI-----TELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPL 390
            +  I  +      T LKSL    + N + +    A       + +  LS +      P 
Sbjct: 288 ITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSIS----DTPF 343

Query: 391 NIVGCF----QLLALIVNNNNLSGEIQPELDALDSLKILDISNNQIS--GEIPLTLAGLK 444
             + C         L    N  +  +      L  L+ L +  N +    ++ L    + 
Sbjct: 344 IHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMS 403

Query: 445 SLEIVDFSSNNLSGSLNDAITKW-TNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNK 503
           SLE +D S N+L+    D    W  ++   +++ N L+G++   L     ++++D   N+
Sbjct: 404 SLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL--PPKVKVLDLHNNR 461

Query: 504 F 504
            
Sbjct: 462 I 462

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 82.6 bits (204), Expect = 1e-16
 Identities = 78/416 (18%), Positives = 153/416 (36%), Gaps = 44/416 (10%)

Query: 260 SVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVF--FEKLLLLDLSFNDLSGPLPSKI 317
            V   +P           L+LS N ++ E+          +L +L LS N +   L   +
Sbjct: 45  HVPKDLPP------RTKALSLSQNSIS-ELRMP-DISFLSELRVLRLSHNRIRS-LDFHV 95

Query: 318 AQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIP--ARIGNLTYLQ 375
               +   L  LD+SHNR      +    + SL+ L LS N     +P     GNLT L 
Sbjct: 96  FLFNQD--LEYLDVSHNRLQN---ISCCPMASLRHLDLSFNDFD-VLPVCKEFGNLTKLT 149

Query: 376 VIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPE----LDALDSLKILDISNNQ 431
            + LS       + L  V    L  ++++  +   +        +     L ++   N+ 
Sbjct: 150 FLGLSAAKFR-QLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSL 208

Query: 432 ISGEIPLTLAGLKSLEIVDFSSNNLSG----SLNDAITKWTNLKYFSIARNKLSGNLPNW 487
            S ++ +++  L  L++ +   N+ +     +    +T+   L   ++   + +      
Sbjct: 209 FSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVK 268

Query: 488 LFSFQ---AIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMV---- 540
           LF F     ++ ++         I    F +S    KS +   +  + F+  +  +    
Sbjct: 269 LFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVF 328

Query: 541 -----IRISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFN- 594
                  +S++      +       S   ++ + N+   ++ +G   L+ L+ L L  N 
Sbjct: 329 AEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNG 388

Query: 595 --FLDGQVPGLYRLRSLRALDLSHNSLT-GQIPGNISSLQELTLLNLSYNSFSGFV 647
                        + SL  LD+S NSL         +  + + +LNLS N  +G V
Sbjct: 389 LKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSV 444

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 66.4 bits (162), Expect = 2e-11
 Identities = 48/187 (25%), Positives = 76/187 (40%), Gaps = 13/187 (6%)

Query: 104 KLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKG 163
             + +   +LS +        C    S    L+ + N F   V      L+ L+ LIL+ 
Sbjct: 327 VFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQR 386

Query: 164 NP--ELGGVFPGWVGNFSMNLEKLDFSFNSF-CGEIPESLYYLKSLKHLDLEKNNLTGNV 220
           N       V      N S +LE LD S NS        +  + +S+  L+L  N LTG+V
Sbjct: 387 NGLKNFFKVA-LMTKNMS-SLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSV 444

Query: 221 HD-FYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNN---SVVGGIPTCIASLQALT 276
                  + VL+L +NR   ++P       +L  L + +N   SV  G+      L +L 
Sbjct: 445 FRCLPPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGV---FDRLTSLQ 500

Query: 277 HLNLSHN 283
           ++ L  N
Sbjct: 501 YIWLHDN 507

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 98.3 bits (245), Expect = 7e-22
 Identities = 58/233 (24%), Positives = 94/233 (40%), Gaps = 12/233 (5%)

Query: 250 SLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPR-LVFFEKLLLLDLSFND 308
           +  +L L  N +          L+ L  L LS NH+   I          L  L+L  N 
Sbjct: 65  NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDNR 123

Query: 309 LSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKI-TELKSLQALFLSNNLLIGEIPAR 367
           L+  +P+       K  L  L L +N     IP      + SL+ L L     +  I   
Sbjct: 124 LTT-IPNGAFVYLSK--LKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEG 179

Query: 368 I-GNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPE-LDALDSLKIL 425
               L+ L+ ++L+   L   IP N+    +L  L ++ N+LS  I+P     L  L+ L
Sbjct: 180 AFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLS-AIRPGSFQGLMHLQKL 236

Query: 426 DISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARN 478
            +  +QI          L+SL  ++ + NNL+   +D  T   +L+   +  N
Sbjct: 237 WMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 91.3 bits (227), Expect = 1e-19
 Identities = 62/284 (21%), Positives = 96/284 (33%), Gaps = 57/284 (20%)

Query: 177 NFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNR 236
             S N   L+   N        S  +L+ L+ L L +N++               +    
Sbjct: 61  GISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-------------TIEIGA 107

Query: 237 FSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRL-VF 295
           F+G L        +L  L+L +N +          L  L  L L +N +   I       
Sbjct: 108 FNG-LA-------NLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNR 158

Query: 296 FEKLLLLDLS-FNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALF 354
              L  LDL     LS                    +S   F G        L +L+ L 
Sbjct: 159 IPSLRRLDLGELKRLS-------------------YISEGAFEG--------LSNLRYLN 191

Query: 355 LSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNI-VGCFQLLALIVNNNNLSGEIQ 413
           L+   L  EIP  +  L  L  +DLS N LS +I      G   L  L +  + +   I+
Sbjct: 192 LAMCNLR-EIPN-LTPLIKLDELDLSGNHLS-AIRPGSFQGLMHLQKLWMIQSQIQ-VIE 247

Query: 414 PE-LDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNL 456
               D L SL  +++++N ++         L  LE +    N  
Sbjct: 248 RNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 89.8 bits (223), Expect = 4e-19
 Identities = 58/257 (22%), Positives = 87/257 (33%), Gaps = 39/257 (15%)

Query: 108 LEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPEL 167
              L L  N         F  L  L+ L LS N    +   A   L NL  L L  N  L
Sbjct: 66  TRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN-RL 124

Query: 168 GGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESL-YYLKSLKHLDLEKNNLTGNVHD--FY 224
             +  G     S  L++L    N     IP      + SL+ LDL +      + +  F 
Sbjct: 125 TTIPNGAFVYLS-KLKELWLRNNPI-ESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFE 182

Query: 225 --QSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSH 282
              +L  LNL        +P      + L  L L  N +    P     L  L  L +  
Sbjct: 183 GLSNLRYLNLAMCNLR-EIPNL-TPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQ 240

Query: 283 NHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPL 342
           + +   I               +F++L                LV ++L+HN  +  +P 
Sbjct: 241 SQIQV-IERN------------AFDNLQ--------------SLVEINLAHNNLT-LLPH 272

Query: 343 KI-TELKSLQALFLSNN 358
            + T L  L+ + L +N
Sbjct: 273 DLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 75.9 bits (187), Expect = 1e-14
 Identities = 54/264 (20%), Positives = 87/264 (32%), Gaps = 58/264 (21%)

Query: 404 NNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDA 463
              NL  E+   +    + ++L++  NQI      +   L+ LEI+  S N++      A
Sbjct: 51  VRKNLR-EVPDGIST--NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGA 107

Query: 464 ITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSD 523
                NL    +  N+L+            ++ +    N     IP   FN         
Sbjct: 108 FNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPI-ESIPSYAFNR-------- 158

Query: 524 IGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGTIPKGLFQ- 582
                      +P    + +     +   LS                     I +G F+ 
Sbjct: 159 -----------IPSLRRLDLG----ELKRLS--------------------YISEGAFEG 183

Query: 583 LQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNS 642
           L  L YLNL+   L  ++P L  L  L  LDLS N L+   PG+   L  L  L +  + 
Sbjct: 184 LSNLRYLNLAMCNLR-EIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQ 242

Query: 643 FSGFVPWKQGYQKFPGAFAGNPNL 666
               +           AF    +L
Sbjct: 243 IQ-VIE--------RNAFDNLQSL 257

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 74.4 bits (183), Expect = 3e-14
 Identities = 59/296 (19%), Positives = 104/296 (35%), Gaps = 62/296 (20%)

Query: 374 LQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPE-LDALDSLKILDISNNQI 432
              +      L   +P  I    +LL L  + N +   I+      L  L+IL +S N I
Sbjct: 45  FSKVICVRKNLR-EVPDGISTNTRLLNL--HENQIQ-IIKVNSFKHLRHLEILQLSRNHI 100

Query: 433 SGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSF- 491
                    GL +L  ++   N L+   N A    + LK   +  N +  ++P++ F+  
Sbjct: 101 RTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRI 159

Query: 492 QAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTN 551
            +++ +D    K + +I +G F                                      
Sbjct: 160 PSLRRLDLGELKRLSYISEGAFE------------------------------------- 182

Query: 552 ELSFNYQLFSAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLR 610
                  L +   ++L+   L   IP  L  L  L+ L+LS N L    PG    L  L+
Sbjct: 183 ------GLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQ 234

Query: 611 ALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVPWKQGYQKFPGAFAGNPNL 666
            L +  + +         +LQ L  +NL++N+ +  +P           F    +L
Sbjct: 235 KLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-LLP--------HDLFTPLHHL 281

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 50.1 bits (120), Expect = 2e-06
 Identities = 24/98 (24%), Positives = 40/98 (40%), Gaps = 12/98 (12%)

Query: 100 PRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLREL 159
           P L  L  L+ L LS N  +      F GL  L+ L +  ++   +  +A   L++L E+
Sbjct: 201 PNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEI 260

Query: 160 ILKGN-----PELGGVFPGWVGNFSMNLEKLDFSFNSF 192
            L  N     P    +F         +LE++    N +
Sbjct: 261 NLAHNNLTLLPH--DLFTPLH-----HLERIHLHHNPW 291

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 94.4 bits (235), Expect = 1e-20
 Identities = 57/257 (22%), Positives = 91/257 (35%), Gaps = 14/257 (5%)

Query: 205 SLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAM-SLTVLKLDNNSVVG 263
               +   +  L+        +   LNL  N     +       +  L VL+L  NS+  
Sbjct: 55  QFSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRNSIRQ 113

Query: 264 GIPTCIASLQALTHLNLSHNHLNYEISPR-LVFFEKLLLLDLSFNDLSGPLPSKIAQTTE 322
                   L +L  L L  N L   I      +  KL  L L  N +   +PS       
Sbjct: 114 IEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIES-IPSYAFNRVP 171

Query: 323 KAGLVLLDLSHNRFSGEIPLKI-TELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSH 381
              L+ LDL   +    I       L +L+ L L    +  ++P  +  L  L+ +++S 
Sbjct: 172 S--LMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMPN-LTPLVGLEELEMSG 227

Query: 382 NMLSGSIPLN-IVGCFQLLALIVNNNNLSGEIQPE-LDALDSLKILDISNNQISGEIPLT 439
           N     I      G   L  L V N+ +S  I+    D L SL  L++++N +S      
Sbjct: 228 NHFP-EIRPGSFHGLSSLKKLWVMNSQVS-LIERNAFDGLASLVELNLAHNNLSSLPHDL 285

Query: 440 LAGLKSLEIVDFSSNNL 456
              L+ L  +    N  
Sbjct: 286 FTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 88.7 bits (220), Expect = 9e-19
 Identities = 60/280 (21%), Positives = 89/280 (31%), Gaps = 57/280 (20%)

Query: 108 LEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPEL 167
             +L L  N      +  F  L  L+ L L  N    +   A   L +L  L L  N   
Sbjct: 77  TRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN--- 133

Query: 168 GGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSL 227
                         L  +             +  YL  L+ L L  N +           
Sbjct: 134 -------------WLTVIP----------SGAFEYLSKLRELWLRNNPIE---------- 160

Query: 228 LVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCI-ASLQALTHLNLSHNHLN 286
              ++ S  F+  +P       SL  L L     +  I       L  L +LNL   ++ 
Sbjct: 161 ---SIPSYAFNR-VP-------SLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK 209

Query: 287 YEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLK-IT 345
               P L     L  L++S N      P      +    L  L + +++ S  I      
Sbjct: 210 DM--PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSS---LKKLWVMNSQVS-LIERNAFD 263

Query: 346 ELKSLQALFLSNNLLIGEIPARI-GNLTYLQVIDLSHNML 384
            L SL  L L++N L   +P  +   L YL  + L HN  
Sbjct: 264 GLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 87.9 bits (218), Expect = 2e-18
 Identities = 60/257 (23%), Positives = 96/257 (37%), Gaps = 36/257 (14%)

Query: 250 SLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDL 309
           +   L L  N++          L  L  L L  N +  +I               +FN L
Sbjct: 76  NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVG------------AFNGL 122

Query: 310 SGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKI-TELKSLQALFLSNNLLIGEIPARI 368
           +               L  L+L  N  +  IP      L  L+ L+L NN  I  IP+  
Sbjct: 123 AS--------------LNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNP-IESIPSYA 166

Query: 369 -GNLTYLQVIDLSHNMLSGSIPLNI-VGCFQLLALIVNNNNLSGEIQPELDALDSLKILD 426
              +  L  +DL        I      G F L  L +   N+  ++ P L  L  L+ L+
Sbjct: 167 FNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DM-PNLTPLVGLEELE 224

Query: 427 ISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPN 486
           +S N      P +  GL SL+ +   ++ +S    +A     +L   ++A N LS +LP+
Sbjct: 225 MSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SLPH 283

Query: 487 WLF-SFQAIQMMDFSTN 502
            LF   + +  +    N
Sbjct: 284 DLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 76.3 bits (188), Expect = 9e-15
 Identities = 59/296 (19%), Positives = 104/296 (35%), Gaps = 62/296 (20%)

Query: 374 LQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPE-LDALDSLKILDISNNQI 432
              +  +   LS  +P  I    + L L    NN+   IQ +    L  L++L +  N I
Sbjct: 56  FSKVVCTRRGLS-EVPQGIPSNTRYLNL--MENNIQ-MIQADTFRHLHHLEVLQLGRNSI 111

Query: 433 SGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSF- 491
                    GL SL  ++   N L+   + A    + L+   +  N +  ++P++ F+  
Sbjct: 112 RQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRV 170

Query: 492 QAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTN 551
            ++  +D    K + +I +G F                                      
Sbjct: 171 PSLMRLDLGELKKLEYISEGAFE------------------------------------- 193

Query: 552 ELSFNYQLFSAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLR 610
                  LF+   ++L    +   +P  L  L GLE L +S N      PG  + L SL+
Sbjct: 194 ------GLFNLKYLNLGMCNIK-DMPN-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLK 245

Query: 611 ALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVPWKQGYQKFPGAFAGNPNL 666
            L + ++ ++         L  L  LNL++N+ S  +P           F     L
Sbjct: 246 KLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SLP--------HDLFTPLRYL 292

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 57.1 bits (138), Expect = 1e-08
 Identities = 25/113 (22%), Positives = 50/113 (44%), Gaps = 6/113 (5%)

Query: 105 LSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGN 164
           L  L++L L        +      L GL+ L++S N F  + P +   L +L++L +  +
Sbjct: 195 LFNLKYLNLGMCNIK-DMPN-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNS 252

Query: 165 PELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYY-LKSLKHLDLEKNNL 216
            ++  +        + +L +L+ + N+    +P  L+  L+ L  L L  N  
Sbjct: 253 -QVSLIERNAFDGLA-SLVELNLAHNNL-SSLPHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 51.3 bits (123), Expect = 6e-07
 Identities = 28/96 (29%), Positives = 38/96 (39%), Gaps = 8/96 (8%)

Query: 100 PRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLREL 159
           P L  L  LE L +S N F       F GLS LK L +  ++   +  +A   L +L EL
Sbjct: 212 PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVEL 271

Query: 160 ILKGNP--EL-GGVFPGWVGNFSMNLEKLDFSFNSF 192
            L  N    L   +F          L +L    N +
Sbjct: 272 NLAHNNLSSLPHDLFTPLR-----YLVELHLHHNPW 302

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 88.3 bits (219), Expect = 5e-19
 Identities = 56/290 (19%), Positives = 97/290 (33%), Gaps = 43/290 (14%)

Query: 108 LEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPEL 167
           ++ L LS+N  T   ++       L+ L L+ N    +  D+   L +L  L L  N   
Sbjct: 54  VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN--- 110

Query: 168 GGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLT----GNVHDF 223
                         L  L                 L SL  L+L  N        ++   
Sbjct: 111 -------------YLSNLS----------SSWFKPLSSLTFLNLLGNPYKTLGETSLFSH 147

Query: 224 YQSLLVLNLGSNRFSGTLPCFA-ASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSH 282
              L +L +G+      +     A    L  L++D + +    P  + S+Q ++HL L  
Sbjct: 148 LTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHM 207

Query: 283 NHLNYEISPRLVF--FEKLLLLDLSFNDLSGPLPSKI-----AQTTEKAGLVLLDLSHNR 335
                 +   +       +  L+L   DL     S++         +K     + ++   
Sbjct: 208 KQHI--LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDES 265

Query: 336 FSGEIPLKITELKSLQALFLSNNLLIGEIPARI-GNLTYLQVIDLSHNML 384
              ++   + ++  L  L  S N L   +P  I   LT LQ I L  N  
Sbjct: 266 LF-QVMKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 82.1 bits (203), Expect = 7e-17
 Identities = 49/266 (18%), Positives = 93/266 (34%), Gaps = 19/266 (7%)

Query: 205 SLKHLDLEKNNLT---GNVHDFYQSLLVLNLGSNRFSGTLPCFA-ASAMSLTVLKLDNNS 260
           ++K LDL  N +T    +      +L  L L SN  + T+   + +S  SL  L L  N 
Sbjct: 53  AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNY 111

Query: 261 VVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFE--KLLLLDLSFNDLSGPLPSKIA 318
           +     +    L +LT LNL  N     +    +F    KL +L +   D    +  K  
Sbjct: 112 LSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDF 170

Query: 319 QTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARI-GNLTYLQVI 377
                  L  L++  +      P  +  ++++  L L        +        + ++ +
Sbjct: 171 AGLTF--LEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQ-HILLLEIFVDVTSSVECL 227

Query: 378 DLSHNMLSG-------SIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNN 430
           +L    L         +   N +        +   +    ++   L+ +  L  L+ S N
Sbjct: 228 ELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN 287

Query: 431 QISGEIPLTLAGLKSLEIVDFSSNNL 456
           Q+          L SL+ +   +N  
Sbjct: 288 QLKSVPDGIFDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 80.9 bits (200), Expect = 1e-16
 Identities = 61/297 (20%), Positives = 112/297 (37%), Gaps = 25/297 (8%)

Query: 330 DLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARI-GNLTYLQVIDLSHNMLSGSI 388
             S    +  IP  +TE  ++++L LSNN  I  I          LQ + L+ N ++ +I
Sbjct: 37  KGSSGSLN-SIPSGLTE--AVKSLDLSNNR-ITYISNSDLQRCVNLQALVLTSNGIN-TI 91

Query: 389 PLNI-VGCFQLLALIVNNNNLSGEIQPEL-DALDSLKILDISNNQISGEIPLTL-AGLKS 445
             +       L  L ++ N LS  +       L SL  L++  N        +L + L  
Sbjct: 92  EEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTK 150

Query: 446 LEIVDFSSNNLSGSL-NDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKF 504
           L+I+   + +    +        T L+   I  + L    P  L S Q +  +     + 
Sbjct: 151 LQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQH 210

Query: 505 MGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVG 564
           +  + +   + + +    ++                    ++  +TN L    + F+   
Sbjct: 211 I-LLLEIFVDVTSSVECLELRD--------TDLDTFHFSELSTGETNSLI---KKFTFRN 258

Query: 565 MDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLY-RLRSLRALDLSHNSLT 620
           + ++D  L   + K L Q+ GL  L  S N L     G++ RL SL+ + L  N   
Sbjct: 259 VKITDESLF-QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 69.8 bits (171), Expect = 6e-13
 Identities = 39/201 (19%), Positives = 78/201 (38%), Gaps = 11/201 (5%)

Query: 295 FFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKI-TELKSLQAL 353
             E +  LDLS N ++    S + +      L  L L+ N  +  I     + L SL+ L
Sbjct: 50  LTEAVKSLDLSNNRITYISNSDLQRCVN---LQALVLTSNGIN-TIEEDSFSSLGSLEHL 105

Query: 354 FLSNNLLIGEIPARI-GNLTYLQVIDLSHNMLSGSIPLNIV--GCFQLLALIVNNNNLSG 410
            LS N L   + +     L+ L  ++L  N    ++    +     +L  L V N +   
Sbjct: 106 DLSYNYL-SNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFT 163

Query: 411 EIQPE-LDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTN 469
           +IQ +    L  L+ L+I  + +    P +L  ++++  +          L   +   ++
Sbjct: 164 KIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSS 223

Query: 470 LKYFSIARNKLSGNLPNWLFS 490
           ++   +    L     + L +
Sbjct: 224 VECLELRDTDLDTFHFSELST 244

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 62.1 bits (151), Expect = 2e-10
 Identities = 40/219 (18%), Positives = 67/219 (30%), Gaps = 38/219 (17%)

Query: 104 KLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAI-MKLRNLRELILK 162
            L  LE L LS N  +   S+ F  LS L  L+L  N +  +   ++   L  L+ L + 
Sbjct: 98  SLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVG 157

Query: 163 GNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLT---GN 219
                  +        +  LE+L+   +      P+SL  ++++ HL L           
Sbjct: 158 NMDTFTKIQRKDFAGLT-FLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEI 216

Query: 220 VHDFYQSLLVLNLGSNRFSG-------------------------------TLPCFAASA 248
             D   S+  L L                                       +       
Sbjct: 217 FVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQI 276

Query: 249 MSLTVLKLDNNSVVGGIPTCI-ASLQALTHLNLSHNHLN 286
             L  L+   N +   +P  I   L +L  + L  N  +
Sbjct: 277 SGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 58.6 bits (142), Expect = 2e-09
 Identities = 34/228 (14%), Positives = 72/228 (31%), Gaps = 45/228 (19%)

Query: 421 SLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKL 480
           ++K LD+SNN+I+      L    +L+ +  +SN ++    D+ +   +L++  ++ N L
Sbjct: 53  AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL 112

Query: 481 SGNLPNWLFSFQAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMV 540
           S    +W     ++  ++   N +        F+                          
Sbjct: 113 SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFS-------------------------- 146

Query: 541 IRISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGTIPKGLFQ-LQGLEYLNLSFNFLDGQ 599
                             L     + + +      I +  F  L  LE L +  + L   
Sbjct: 147 -----------------HLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSY 189

Query: 600 VPG-LYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGF 646
            P  L  ++++  L L        +   +     +  L L       F
Sbjct: 190 EPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTF 237

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 42.8 bits (101), Expect = 2e-04
 Identities = 16/104 (15%), Positives = 32/104 (30%), Gaps = 12/104 (11%)

Query: 566 DLSDNLLHGTIPKGLFQ-LQGLEYLNLSFNFLDGQVPG--LYRLRSLRALDLSHNSLTGQ 622
           +L  N         LF  L  L+ L +       ++       L  L  L++  + L   
Sbjct: 130 NLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSY 189

Query: 623 IPGNISSLQELTLLNLSYNSFSGFVPWKQGYQKFPGAFAGNPNL 666
            P ++ S+Q ++ L L        +                 ++
Sbjct: 190 EPKSLKSIQNVSHLILHMKQHI-LLL--------EIFVDVTSSV 224

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 89.8 bits (222), Expect = 8e-19
 Identities = 57/365 (15%), Positives = 120/365 (32%), Gaps = 42/365 (11%)

Query: 198 ESLYYLKSLKHLDLEKNNLTGNVH-DFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKL 256
                       +L+K ++T  V  +   S+  +   ++                    +
Sbjct: 15  FPDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIK----------------SV 58

Query: 257 DNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSK 316
                       I  L  +T L L+ N L  +I P L   + L  L L  N +       
Sbjct: 59  QG----------IQYLPNVTKLFLNGNKLT-DIKP-LTNLKNLGWLFLDENKIK-----D 101

Query: 317 IAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQV 376
           ++   +   L  L L HN  S +I   +  L  L++L+L NN  I +I   +  LT L  
Sbjct: 102 LSSLKDLKKLKSLSLEHNGIS-DIN-GLVHLPQLESLYLGNNK-ITDITV-LSRLTKLDT 157

Query: 377 IDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEI 436
           + L  N +S  I   + G  +L  L ++ N++S +++  L  L +L +L++ + +   + 
Sbjct: 158 LSLEDNQIS-DIV-PLAGLTKLQNLYLSKNHIS-DLRA-LAGLKNLDVLELFSQECLNKP 213

Query: 437 PLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQM 496
               + L     V  +  +L      +               + +  +    +    I  
Sbjct: 214 INHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGK 273

Query: 497 MDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFN 556
                +  +       +  S + + + I   + A + +       +              
Sbjct: 274 AKARFHGRVTQPLKEVYTVSYDVDGTVIKTKVEAGTRITAPKPPTKQGYVFKGWYTEKNG 333

Query: 557 YQLFS 561
              ++
Sbjct: 334 GHEWN 338

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 78.6 bits (193), Expect = 3e-15
 Identities = 62/398 (15%), Positives = 122/398 (30%), Gaps = 53/398 (13%)

Query: 108 LEFLVLSSNAFTGRISTCFG--GLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNP 165
           +   +  S      I   F     +     +L        V     +L ++ ++I   + 
Sbjct: 1   MGETITVST----PIKQIFPDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNS- 53

Query: 166 ELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQ 225
                          +++ +            + + YL ++  L L  N LT ++     
Sbjct: 54  ---------------DIKSV------------QGIQYLPNVTKLFLNGNKLT-DIKPLTN 85

Query: 226 --SLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHN 283
             +L  L L  N+    L         L  L L++N +       +  L  L  L L +N
Sbjct: 86  LKNLGWLFLDENKIK-DLSSLKDLK-KLKSLSLEHNGIS--DINGLVHLPQLESLYLGNN 141

Query: 284 HLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLK 343
            +  +I+  L    KL  L L  N +S      I        L  L LS N  S    L 
Sbjct: 142 KIT-DITV-LSRLTKLDTLSLEDNQIS-----DIVPLAGLTKLQNLYLSKNHISDLRALA 194

Query: 344 ITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIV 403
              LK+L  L L +   + +      NL     +  +   L     ++  G ++   +  
Sbjct: 195 --GLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKW 252

Query: 404 NNNNLSGEIQPELDALDSLKILDIS-NNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLND 462
           +    + E+        ++       + +++  +         ++     +   +G+   
Sbjct: 253 HLPEFTNEVSFIFYQPVTIGKAKARFHGRVTQPLKEVYTVSYDVDGTVIKTKVEAGTRIT 312

Query: 463 AITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFS 500
           A    T   Y              W F+   +   DF+
Sbjct: 313 APKPPTKQGYVFKGWYTEKNGGHEWNFNTDYMSGNDFT 350

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 72.1 bits (176), Expect = 3e-13
 Identities = 50/294 (17%), Positives = 100/294 (34%), Gaps = 61/294 (20%)

Query: 350 LQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLS 409
           +      +   I +I             +L    ++ ++  N      +  +I NN+++ 
Sbjct: 1   MGETITVSTP-IKQIFP-DDAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIK 56

Query: 410 GEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTN 469
             +Q  +  L ++  L ++ N+++   PL    LK+L  +    N +   L  ++     
Sbjct: 57  -SVQG-IQYLPNVTKLFLNGNKLTDIKPL--TNLKNLGWLFLDENKIK-DL-SSLKDLKK 110

Query: 470 LKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMP 529
           LK  S+  N +S ++   L     ++ +    NK                          
Sbjct: 111 LKSLSLEHNGIS-DING-LVHLPQLESLYLGNNK-------------------------- 142

Query: 530 AKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGTIPKGLFQLQGLEYL 589
                        I+    D   LS   +L +   + L DN +   I   L  L  L+ L
Sbjct: 143 -------------IT----DITVLSRLTKLDT---LSLEDNQIS-DIV-PLAGLTKLQNL 180

Query: 590 NLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSF 643
            LS N +   +  L  L++L  L+L       +   + S+L     +  +  S 
Sbjct: 181 YLSKNHIS-DLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 233

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 86.1 bits (213), Expect = 1e-18
 Identities = 66/304 (21%), Positives = 100/304 (32%), Gaps = 29/304 (9%)

Query: 177 NFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDF----YQSLLVLNL 232
           NFS        +FN       E     +SL++L    +               SL  L +
Sbjct: 16  NFSDPKPDWSSAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTV 75

Query: 233 GSNRFSGTLPCFAASAMS---LTVLKLDNNSVVGGIPTCIASLQ--ALTHLNLSHNHLNY 287
            + R    +   A   +    L  L L+N  V G  P  +       L  LNL +     
Sbjct: 76  RAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWAT 135

Query: 288 EISPRLVFFEKLLL----LDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLK 343
             +      + L      L ++          ++        L  LDLS N   GE  L 
Sbjct: 136 RDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPA---LSTLDLSDNPELGERGLI 192

Query: 344 IT----ELKSLQALFLSNNL---LIGEIPARIGNLTYLQVIDLSHNMLSGSIP-LNIVGC 395
                 +  +LQ L L N       G   A       LQ +DLSHN L  +    +    
Sbjct: 193 SALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP 252

Query: 396 FQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNN 455
            QL +L ++   L  ++   L A   L +LD+S N++    P     L  +  +    N 
Sbjct: 253 SQLNSLNLSFTGLK-QVPKGLPA--KLSVLDLSYNRLD-RNPSPD-ELPQVGNLSLKGNP 307

Query: 456 LSGS 459
              S
Sbjct: 308 FLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 86.1 bits (213), Expect = 2e-18
 Identities = 62/305 (20%), Positives = 99/305 (32%), Gaps = 26/305 (8%)

Query: 76  ACNFQTGHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTL 135
           +CNF        +  +   +  V       S    L            T       LK L
Sbjct: 14  SCNFSDPKPDWSSAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRL 73

Query: 136 DLSYNKFVGVVPDAIMKLRN---LRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSF 192
            +   +    +    +++     L+EL L+     G   P  +     +L  L+    S+
Sbjct: 74  TVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSW 133

Query: 193 CGEIPE----SLYYLKSLKHLDLEKNNLTG---NVHDFYQSLLVLNLGSNRFSGTLPCFA 245
                       +    LK L + + +           + +L  L+L  N   G     +
Sbjct: 134 ATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLIS 193

Query: 246 ASAM----SLTVLKLDNN---SVVGGIPTCIASLQALTHLNLSHNHLNYEISP-RLVFFE 297
           A       +L VL L N    +  G      A+   L  L+LSHN L          +  
Sbjct: 194 ALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPS 253

Query: 298 KLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSN 357
           +L  L+LSF  L   +P  +        L +LDLS+NR     P    EL  +  L L  
Sbjct: 254 QLNSLNLSFTGLKQ-VPKGLPAK-----LSVLDLSYNRLD-RNPS-PDELPQVGNLSLKG 305

Query: 358 NLLIG 362
           N  + 
Sbjct: 306 NPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 85.3 bits (211), Expect = 3e-18
 Identities = 53/280 (18%), Positives = 87/280 (31%), Gaps = 25/280 (8%)

Query: 126 FGGLSGLKTLDLSYNKFVGVVPDA-IMKLRNLRELILKGNPELGGVFPGWVGNFSM-NLE 183
           +GG   L+ L    +    +     I+K  +L+ L ++       +  G +    +  L+
Sbjct: 39  YGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQ 98

Query: 184 KLDFSFNSFCGEIPESL--YYLKSLKHLDLEKNNLTGNVHDFYQ-------SLLVLNLGS 234
           +L        G  P  L       L  L+L   +         +        L VL++  
Sbjct: 99  ELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQ 158

Query: 235 NRFSGTLPCFAASAMSLTVLKLDNNSVVGGIP----TCIASLQALTHLNLSHNHLN---Y 287
                          +L+ L L +N  +G        C      L  L L +  +     
Sbjct: 159 AHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSG 218

Query: 288 EISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITEL 347
             S       +L  LDLS N L     +       +  L  L+LS      ++P  +   
Sbjct: 219 VCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQ--LNSLNLSFTGLK-QVPKGL--P 273

Query: 348 KSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGS 387
             L  L LS N L    P     L  +  + L  N    S
Sbjct: 274 AKLSVLDLSYNRL-DRNP-SPDELPQVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 81.5 bits (201), Expect = 6e-17
 Identities = 47/267 (17%), Positives = 88/267 (32%), Gaps = 35/267 (13%)

Query: 252 TVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFE---KLLLLDLSFND 308
            +LK  +     G  T I    +L  L +    +   I    +       L  L L   +
Sbjct: 47  YLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLE 106

Query: 309 LSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIP----LKITELKSLQALFLSNNLLIGEI 364
           ++G  P  + + T    L +L+L +  ++        L+      L+ L ++    +   
Sbjct: 107 VTGTAPPPLLEATGPD-LNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFS 165

Query: 365 PARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKI 424
             ++     L  +DLS N   G   L    C                         +L++
Sbjct: 166 CEQVRVFPALSTLDLSDNPELGERGLISALC--------------------PLKFPTLQV 205

Query: 425 LDISNNQ---ISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKW-TNLKYFSIARNKL 480
           L + N      SG      A    L+ +D S N+L  +       W + L   +++   L
Sbjct: 206 LALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGL 265

Query: 481 SGNLPNWLFSFQAIQMMDFSTNKFMGF 507
              +P  L     + ++D S N+    
Sbjct: 266 KQ-VPKGL--PAKLSVLDLSYNRLDRN 289

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 81.1 bits (200), Expect = 8e-17
 Identities = 62/301 (20%), Positives = 98/301 (32%), Gaps = 27/301 (8%)

Query: 355 LSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQP 414
             N L   ++    G  +   ++             +I+    L  L V    +   I  
Sbjct: 27  AFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILF 86

Query: 415 ELDALDS---LKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAIT------ 465
               +     L+ L + N +++G  P  L      ++   +  N+S +  DA        
Sbjct: 87  GALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQW 146

Query: 466 KWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIG 525
               LK  SIA+          +  F A+  +D S N  +G     +    L F      
Sbjct: 147 LKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQ-- 204

Query: 526 RSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGTIPKGLFQ-LQ 584
                   VL        + + + +   +   QL     +DLS N L             
Sbjct: 205 --------VLALRNAGMETPSGVCSALAAARVQLQG---LDLSHNSLRDAAGAPSCDWPS 253

Query: 585 GLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFS 644
            L  LNLSF  L     GL     L  LDLS+N L    P +   L ++  L+L  N F 
Sbjct: 254 QLNSLNLSFTGLKQVPKGL--PAKLSVLDLSYNRLDR-NP-SPDELPQVGNLSLKGNPFL 309

Query: 645 G 645
            
Sbjct: 310 D 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 78.4 bits (193), Expect = 7e-16
 Identities = 53/310 (17%), Positives = 92/310 (29%), Gaps = 63/310 (20%)

Query: 328 LLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPA---RIGNLTYLQVIDLSHNML 384
           LL              I +  SL+ L +    +   I     R+  ++ LQ + L +  +
Sbjct: 48  LLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEV 107

Query: 385 SGSIPLNIVGCF--QLLALIVNNNNLSGEIQPELDALD----SLKILDISNNQISGEIPL 438
           +G+ P  ++      L  L + N + +       +        LK+L I+          
Sbjct: 108 TGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCE 167

Query: 439 TLAGLKSLEIVDFSSNNLSGSLNDAIT----KWTNLKYFSIARNK---LSGNLPNWLFSF 491
            +    +L  +D S N   G           K+  L+  ++        SG       + 
Sbjct: 168 QVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAAR 227

Query: 492 QAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTN 551
             +Q +D S N         + +                     P  +            
Sbjct: 228 VQLQGLDLSHNSLRDAAGAPSCD--------------------WPSQLNS---------- 257

Query: 552 ELSFNYQLFSAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRA 611
                        ++LS   L   +PKGL     L  L+LS+N LD   P    L  +  
Sbjct: 258 -------------LNLSFTGLK-QVPKGLPA--KLSVLDLSYNRLDR-NPSPDELPQVGN 300

Query: 612 LDLSHNSLTG 621
           L L  N    
Sbjct: 301 LSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 61.8 bits (150), Expect = 2e-10
 Identities = 48/252 (19%), Positives = 81/252 (32%), Gaps = 18/252 (7%)

Query: 2   ELKRDLNVHSCRALKLQMLPLLLFLLLLCSNPSESLELNLED-KASLLLFKSLVQDPTQK 60
           ++ + L++        ++   +LF  L     S   EL LE+ + +      L++     
Sbjct: 63  DIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPD 122

Query: 61  LSSWVGSNCT-----NWTGVACNFQTGHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSS 115
           L+     N +      W      +    +  +++           ++     L  L LS 
Sbjct: 123 LNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSD 182

Query: 116 NAFTGRI----STCFGGLSGLKTLDLSYNKF---VGVVPDAIMKLRNLRELILKGNPELG 168
           N   G      + C      L+ L L         GV          L+ L L  N  L 
Sbjct: 183 NPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHN-SLR 241

Query: 169 GVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGN-VHDFYQSL 227
                   ++   L  L+ SF     ++P+ L     L  LDL  N L  N   D    +
Sbjct: 242 DAAGAPSCDWPSQLNSLNLSFTGL-KQVPKGL--PAKLSVLDLSYNRLDRNPSPDELPQV 298

Query: 228 LVLNLGSNRFSG 239
             L+L  N F  
Sbjct: 299 GNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 52.6 bits (126), Expect = 2e-07
 Identities = 29/217 (13%), Positives = 69/217 (31%), Gaps = 18/217 (8%)

Query: 440 LAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDF 499
             G +SLE +    +  +            +K  S+ R  +          F A++++  
Sbjct: 39  YGGGRSLEYLLKRVDTEADLGQFTDI----IKSLSLKRLTVRAARIPSRILFGALRVLGI 94

Query: 500 STNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQL 559
           S  + +      N   +       +  + P  + +  R++        +        +  
Sbjct: 95  SGLQELTLE---NLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAE---LQQWLK 148

Query: 560 FSAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVP-----GLYRLRSLRALDL 614
                + ++         + +     L  L+LS N   G+          +  +L+ L L
Sbjct: 149 PGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLAL 208

Query: 615 SHN---SLTGQIPGNISSLQELTLLNLSYNSFSGFVP 648
            +    + +G      ++  +L  L+LS+NS      
Sbjct: 209 RNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAG 245

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 85.4 bits (212), Expect = 2e-18
 Identities = 49/233 (21%), Positives = 78/233 (33%), Gaps = 34/233 (14%)

Query: 250 SLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDL 309
           +   + L  N +         + + LT L L  N L   I               +F  L
Sbjct: 33  ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAA------------AFTGL 79

Query: 310 SGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKI-TELKSLQALFLSNNLLIGEIPARI 368
           +               L  LDLS N     +       L  L  L L     + E+   +
Sbjct: 80  AL--------------LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCG-LQELGPGL 124

Query: 369 -GNLTYLQVIDLSHNMLSGSIPLNI-VGCFQLLALIVNNNNLSGEIQPE-LDALDSLKIL 425
              L  LQ + L  N L  ++P +       L  L ++ N +S  +       L SL  L
Sbjct: 125 FRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRL 182

Query: 426 DISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARN 478
            +  N+++   P     L  L  +   +NNLS    +A+     L+Y  +  N
Sbjct: 183 LLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 79.7 bits (197), Expect = 2e-16
 Identities = 54/259 (20%), Positives = 87/259 (33%), Gaps = 57/259 (22%)

Query: 177 NFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNR 236
                 +++    N        S    ++L  L L  N L               + +  
Sbjct: 29  GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-------------RIDAAA 75

Query: 237 FSGTLPCFAASAMSLTVLKLDNNSVVGGIP-TCIASLQALTHLNLSHNHLNYEISPRLVF 295
           F+G L         L  L L +N+ +  +       L  L  L+L    L  E+ P L  
Sbjct: 76  FTG-LA-------LLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGL-- 124

Query: 296 FEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKI-TELKSLQALF 354
                     F  L+               L  L L  N     +P     +L +L  LF
Sbjct: 125 ----------FRGLA--------------ALQYLYLQDNALQ-ALPDDTFRDLGNLTHLF 159

Query: 355 LSNNLLIGEIPARI-GNLTYLQVIDLSHNMLSGSIPLNI-VGCFQLLALIVNNNNLSGEI 412
           L  N  I  +P R    L  L  + L  N ++  +  +      +L+ L +  NNLS  +
Sbjct: 160 LHGN-RISSVPERAFRGLHSLDRLLLHQNRVA-HVHPHAFRDLGRLMTLYLFANNLS-AL 216

Query: 413 QPE-LDALDSLKILDISNN 430
             E L  L +L+ L +++N
Sbjct: 217 PTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 79.7 bits (197), Expect = 2e-16
 Identities = 53/208 (25%), Positives = 71/208 (34%), Gaps = 14/208 (6%)

Query: 108 LEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPEL 167
            + + L  N  +   +  F     L  L L  N    +   A   L  L +L L  N +L
Sbjct: 34  SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93

Query: 168 GGVFPGWVGNFSMNLEKLDFSFNSFCGEIPE-SLYYLKSLKHLDLEKNNLTGNVHD--FY 224
             V P         L  L         E+       L +L++L L+ N L   + D  F 
Sbjct: 94  RSVDPATFHGLG-RLHTLHLDRCGL-QELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFR 150

Query: 225 --QSLLVLNLGSNRFSGTLPCFA-ASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLS 281
              +L  L L  NR S ++P  A     SL  L L  N V    P     L  L  L L 
Sbjct: 151 DLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLF 209

Query: 282 HNHLNYEISPRLVF--FEKLLLLDLSFN 307
            N+L     P         L  L L+ N
Sbjct: 210 ANNL--SALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 65.8 bits (161), Expect = 6e-12
 Identities = 57/272 (20%), Positives = 92/272 (33%), Gaps = 55/272 (20%)

Query: 377 IDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEI 436
                  L  ++P+ I    Q + L  + N +S        A  +L IL + +N ++   
Sbjct: 16  TSCPQQGLQ-AVPVGIPAASQRIFL--HGNRISHVPAASFRACRNLTILWLHSNVLARID 72

Query: 437 PLTLAGLKSLEIVDFSSNNLSGSL-NDAITKWTNLKYFSIARNKLSGNLPNWLFS-FQAI 494
                GL  LE +D S N    S+          L    + R  L   L   LF    A+
Sbjct: 73  AAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAAL 131

Query: 495 QMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELS 554
           Q +    N  +  +PD  F                                   D   L+
Sbjct: 132 QYLYLQDNA-LQALPDDTFR----------------------------------DLGNLT 156

Query: 555 FNYQLFSAVGMDLSDNLLHGTIPKGLFQ-LQGLEYLNLSFNFLDGQVPGLYR-LRSLRAL 612
                     + L  N +  ++P+  F+ L  L+ L L  N +    P  +R L  L  L
Sbjct: 157 H---------LFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTL 206

Query: 613 DLSHNSLTGQIPGNI-SSLQELTLLNLSYNSF 643
            L  N+L+  +P    + L+ L  L L+ N +
Sbjct: 207 YLFANNLS-ALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 65.4 bits (160), Expect = 1e-11
 Identities = 44/249 (17%), Positives = 73/249 (29%), Gaps = 57/249 (22%)

Query: 421 SLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKL 480
           + + + +  N+IS     +    ++L I+   SN L+     A T    L+   ++ N  
Sbjct: 33  ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92

Query: 481 SGNLPNWLFSF-QAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSM 539
             ++    F     +  +                            + +    F      
Sbjct: 93  LRSVDPATFHGLGRLHTLHLDRCGL---------------------QELGPGLF------ 125

Query: 540 VIRISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGTIPKGLFQ-LQGLEYLNLSFNFLDG 598
                              L +   + L DN L   +P   F+ L  L +L L  N +  
Sbjct: 126 -----------------RGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISS 167

Query: 599 QVPGLYR-LRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVPWKQGYQKFP 657
                +R L SL  L L  N +    P     L  L  L L  N+ S  +P         
Sbjct: 168 VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS-ALP--------T 218

Query: 658 GAFAGNPNL 666
            A A    L
Sbjct: 219 EALAPLRAL 227

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 56.5 bits (137), Expect = 8e-09
 Identities = 30/114 (26%), Positives = 44/114 (38%), Gaps = 4/114 (3%)

Query: 104 KLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKG 163
            L+ L++L L  NA        F  L  L  L L  N+   V   A   L +L  L+L  
Sbjct: 127 GLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQ 186

Query: 164 NPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLY-YLKSLKHLDLEKNNL 216
           N  +  V P    +    L  L    N+    +P      L++L++L L  N  
Sbjct: 187 N-RVAHVHPHAFRDLG-RLMTLYLFANNL-SALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 46.1 bits (110), Expect = 2e-05
 Identities = 21/93 (22%), Positives = 30/93 (32%), Gaps = 11/93 (11%)

Query: 575 TIPKGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIPGNISSLQEL 633
            +P G+      + + L  N +           R+L  L L  N L        + L  L
Sbjct: 25  AVPVGIPA--ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALL 82

Query: 634 TLLNLSYNSFSGFVPWKQGYQKFPGAFAGNPNL 666
             L+LS N+    V         P  F G   L
Sbjct: 83  EQLDLSDNAQLRSVD--------PATFHGLGRL 107

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 85.9 bits (213), Expect = 2e-18
 Identities = 63/314 (20%), Positives = 119/314 (37%), Gaps = 31/314 (9%)

Query: 198 ESLYYLKSLKHLDLEKNNLTGNVH-DFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKL 256
                L +   +   K+N+T  V       +  L+      + T+        +L  L+L
Sbjct: 13  FPDPALANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVT-TIEGVQ-YLNNLIGLEL 70

Query: 257 DNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSK 316
            +N +       + +L  +T L LS N L   +S  +   + +  LDL+   ++      
Sbjct: 71  KDNQITD--LAPLKNLTKITELELSGNPLK-NVSA-IAGLQSIKTLDLTSTQIT-----D 121

Query: 317 IAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQV 376
           +      + L +L L  N+ +   PL    L +LQ L + N   + ++   + NL+ L  
Sbjct: 122 VTPLAGLSNLQVLYLDLNQITNISPLA--GLTNLQYLSIGNAQ-VSDLTP-LANLSKLTT 177

Query: 377 IDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEI 436
           +    N +S  I   +     L+ + + NN +S      L    +L I+ ++N  I+ + 
Sbjct: 178 LKADDNKIS-DIS-PLASLPNLIEVHLKNNQISDV--SPLANTSNLFIVTLTNQTITNQP 233

Query: 437 PLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWL----FSFQ 492
                 L    +V       SG+     T   N  Y   A   L+ NL +++    ++F 
Sbjct: 234 VFYNNNLVVPNVV----KGPSGAPIAPATISDNGTY---ASPNLTWNLTSFINNVSYTFN 286

Query: 493 AIQMMDFSTNKFMG 506
                  +T  F G
Sbjct: 287 QSVTFKNTTVPFSG 300

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 72.0 bits (177), Expect = 8e-14
 Identities = 60/285 (21%), Positives = 112/285 (39%), Gaps = 24/285 (8%)

Query: 102 LCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELIL 161
              L+    +    +  T  ++     L G+ TL         +  + +  L NL  L L
Sbjct: 15  DPALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLEL 70

Query: 162 KGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTG-NV 220
           K N ++  + P  + N +  + +L+ S N    +   ++  L+S+K LDL    +T    
Sbjct: 71  KDN-QITDLAP--LKNLT-KITELELSGNPL--KNVSAIAGLQSIKTLDLTSTQITDVTP 124

Query: 221 HDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNL 280
                +L VL L  N+ +  +    A   +L  L + N  V    P  +A+L  LT L  
Sbjct: 125 LAGLSNLQVLYLDLNQIT-NISPL-AGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKA 180

Query: 281 SHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEI 340
             N ++ +ISP L     L+ + L  N +     S ++     + L ++ L++   + + 
Sbjct: 181 DDNKIS-DISP-LASLPNLIEVHLKNNQI-----SDVSPLANTSNLFIVTLTNQTITNQP 233

Query: 341 PLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLS 385
                 L     +   +   I   PA I +       +L+ N+ S
Sbjct: 234 VFYNNNLVVPNVVKGPSGAPI--APATISDNGTYASPNLTWNLTS 276

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 59.3 bits (144), Expect = 1e-09
 Identities = 42/276 (15%), Positives = 93/276 (33%), Gaps = 48/276 (17%)

Query: 370 NLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISN 429
            L     I    + ++ ++         +  L      ++  I+  +  L++L  L++ +
Sbjct: 17  ALANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVT-TIEG-VQYLNNLIGLELKD 72

Query: 430 NQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLF 489
           NQI+   PL    L  +  ++ S N L      AI    ++K   +   +++ ++   L 
Sbjct: 73  NQITDLAPL--KNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQIT-DVTP-LA 126

Query: 490 SFQAIQMMDFSTNKFMGFIPDGNF----NFSLNFNKSDIGRSMPAKSFVLPRSMVIRISV 545
               +Q++    N+     P          S+   +                     +S 
Sbjct: 127 GLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQ---------------------VS- 164

Query: 546 TAIDTNELSFNYQLFSAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYR 605
                 +L+    L     +   DN +  +    L  L  L  ++L  N +   V  L  
Sbjct: 165 ------DLTPLANLSKLTTLKADDNKI--SDISPLASLPNLIEVHLKNNQIS-DVSPLAN 215

Query: 606 LRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYN 641
             +L  + L++ ++T Q    +     L + N+   
Sbjct: 216 TSNLFIVTLTNQTITNQ---PVFYNNNLVVPNVVKG 248

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 57.4 bits (139), Expect = 6e-09
 Identities = 34/259 (13%), Positives = 89/259 (34%), Gaps = 45/259 (17%)

Query: 397 QLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNL 456
             + +    +N++  +      LD +  L      ++  I   +  L +L  ++   N +
Sbjct: 20  NAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQI 75

Query: 457 SGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDGNFN-- 514
           +      +   T +    ++ N L  N+   +   Q+I+ +D ++ +     P    +  
Sbjct: 76  TDL--APLKNLTKITELELSGNPLK-NVSA-IAGLQSIKTLDLTSTQITDVTPLAGLSNL 131

Query: 515 --FSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVGMDLSDNLL 572
               L+ N+                     I+    + + L+    L     + + +  +
Sbjct: 132 QVLYLDLNQ---------------------IT----NISPLAGLTNLQY---LSIGNAQV 163

Query: 573 HGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQE 632
             +    L  L  L  L    N +   +  L  L +L  + L +N ++   P  +++   
Sbjct: 164 --SDLTPLANLSKLTTLKADDNKIS-DISPLASLPNLIEVHLKNNQISDVSP--LANTSN 218

Query: 633 LTLLNLSYNSFSGFVPWKQ 651
           L ++ L+  + +    +  
Sbjct: 219 LFIVTLTNQTITNQPVFYN 237

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 57.0 bits (138), Expect = 7e-09
 Identities = 38/247 (15%), Positives = 80/247 (32%), Gaps = 41/247 (16%)

Query: 400 ALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGS 459
             I     ++  I P   AL +   +    + ++  +    A L  +  +      ++  
Sbjct: 1   GSITQPTAIN-VIFP-DPALANAIKIAAGKSNVTDTVTQ--ADLDGITTLSAFGTGVTTI 56

Query: 460 LNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDGNFNF--SL 517
             + +    NL    +  N+++ +L   L +   I  ++ S N               +L
Sbjct: 57  --EGVQYLNNLIGLELKDNQIT-DLAP-LKNLTKITELELSGNPLKNVSAIAGLQSIKTL 112

Query: 518 NFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGTIP 577
           +   + I                           +++    L +   + L  N +  T  
Sbjct: 113 DLTSTQI--------------------------TDVTPLAGLSNLQVLYLDLNQI--TNI 144

Query: 578 KGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLN 637
             L  L  L+YL++    +   +  L  L  L  L    N ++  I   ++SL  L  ++
Sbjct: 145 SPLAGLTNLQYLSIGNAQVS-DLTPLANLSKLTTLKADDNKIS-DISP-LASLPNLIEVH 201

Query: 638 LSYNSFS 644
           L  N  S
Sbjct: 202 LKNNQIS 208

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 55.8 bits (135), Expect = 2e-08
 Identities = 57/275 (20%), Positives = 108/275 (39%), Gaps = 53/275 (19%)

Query: 102 LCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELIL 161
           +  L+ L  L L  N  T  ++     L+ +  L+LS N         +  +  +  L  
Sbjct: 59  VQYLNNLIGLELKDNQIT-DLA-PLKNLTKITELELSGNP--------LKNVSAIAGLQ- 107

Query: 162 KGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVH 221
                              +++ LD +           L  L +L+ L L+ N +T N+ 
Sbjct: 108 -------------------SIKTLDLTSTQITD--VTPLAGLSNLQVLYLDLNQIT-NIS 145

Query: 222 DFYQ--SLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLN 279
                 +L  L++G+ + S  L    A+   LT LK D+N +    P  +ASL  L  ++
Sbjct: 146 PLAGLTNLQYLSIGNAQVS-DLTPL-ANLSKLTTLKADDNKISDISP--LASLPNLIEVH 201

Query: 280 LSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGE 339
           L +N ++ ++SP L     L ++ L+   ++               LV+ ++        
Sbjct: 202 LKNNQIS-DVSP-LANTSNLFIVTLTNQTITNQ------PVFYNNNLVVPNVVKGPSGAP 253

Query: 340 I-PLKITELKSLQALFLSNNLLIGEIPARIGNLTY 373
           I P  I++  +  +  L+ NL      + I N++Y
Sbjct: 254 IAPATISDNGTYASPNLTWNL-----TSFINNVSY 283

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 78.1 bits (193), Expect = 1e-16
 Identities = 28/167 (16%), Positives = 71/167 (42%), Gaps = 10/167 (5%)

Query: 269 IASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVL 328
            A + +LT++ L++ ++  +++  + +   +  L ++    +    + I+  +    L  
Sbjct: 40  EAQMNSLTYITLANINVT-DLTG-IEYAHNIKDLTINNIHATNY--NPISGLSN---LER 92

Query: 329 LDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSI 388
           L +     + +    ++ L SL  L +S++     I  +I  L  +  IDLS+N     I
Sbjct: 93  LRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI 152

Query: 389 PLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGE 435
              +    +L +L +  + +  + +  ++    L  L   +  I G+
Sbjct: 153 M-PLKTLPELKSLNIQFDGVH-DYRG-IEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 61.9 bits (151), Expect = 4e-11
 Identities = 26/185 (14%), Positives = 63/185 (34%), Gaps = 13/185 (7%)

Query: 345 TELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVN 404
           +  K+     L  +     I      +  L  I L++  ++    +       +  L +N
Sbjct: 20  STFKAYLNGLLGQSS-TANIT--EAQMNSLTYITLANINVTDLTGIE--YAHNIKDLTIN 74

Query: 405 NNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAI 464
           N + +    P +  L +L+ L I    ++ +    L+GL SL ++D S +    S+   I
Sbjct: 75  NIHAT-NYNP-ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKI 132

Query: 465 TKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDGNF----NFSLNFN 520
                +    ++ N    ++   L +   ++ ++   +    +    +F           
Sbjct: 133 NTLPKVNSIDLSYNGAITDIMP-LKTLPELKSLNIQFDGVHDYRGIEDFPKLNQLYAFSQ 191

Query: 521 K-SDI 524
                
Sbjct: 192 TIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 55.7 bits (135), Expect = 4e-09
 Identities = 25/164 (15%), Positives = 50/164 (30%), Gaps = 12/164 (7%)

Query: 126 FGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKL 185
              ++ L  + L+      +    I    N+++L +          P  +   S NLE+L
Sbjct: 40  EAQMNSLTYITLANINVTDLTG--IEYAHNIKDLTINNI-HATNYNP--ISGLS-NLERL 93

Query: 186 DFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDF---YQSLLVLNLGSNRFSGTLP 242
                    +   +L  L SL  LD+  +    ++         +  ++L  N     + 
Sbjct: 94  RIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM 153

Query: 243 CFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLN 286
               +   L  L +  + V       I     L  L      + 
Sbjct: 154 PL-KTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTIG 194

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 55.7 bits (135), Expect = 5e-09
 Identities = 23/117 (19%), Positives = 40/117 (34%), Gaps = 5/117 (4%)

Query: 102 LCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELIL 161
           +  LS LE L +     T        GL+ L  LD+S++     +   I  L  +  + L
Sbjct: 84  ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDL 143

Query: 162 KGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTG 218
             N  +  + P  +      L+ L+  F+         +     L  L      + G
Sbjct: 144 SYNGAITDIMP--LKTLP-ELKSLNIQFDGV--HDYRGIEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 50.0 bits (120), Expect = 4e-07
 Identities = 15/80 (18%), Positives = 32/80 (40%), Gaps = 2/80 (2%)

Query: 566 DLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPG 625
           D+S +    +I   +  L  +  ++LS+N     +  L  L  L++L++  + +      
Sbjct: 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYRG- 176

Query: 626 NISSLQELTLLNLSYNSFSG 645
            I    +L  L     +  G
Sbjct: 177 -IEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 50.0 bits (120), Expect = 5e-07
 Identities = 17/84 (20%), Positives = 34/84 (40%), Gaps = 2/84 (2%)

Query: 566 DLSDNLLHGTIPKGLFQLQGLEYLNLSFNFL-DGQVPGLYRLRSLRALDLSHNSLTGQIP 624
            +    +       L  L  L  L++S +   D  +  +  L  + ++DLS+N     I 
Sbjct: 94  RIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM 153

Query: 625 GNISSLQELTLLNLSYNSFSGFVP 648
             + +L EL  LN+ ++    +  
Sbjct: 154 P-LKTLPELKSLNIQFDGVHDYRG 176

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 49.2 bits (118), Expect = 8e-07
 Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 3/78 (3%)

Query: 566 DLSDNLLHGTIPKGLFQLQGLEYLNLSFNFL-DGQVPGLYRLRSLRALDLSHNSLTGQIP 624
            +++     T    +  L  LE L +    +   ++P L  L SL  LD+SH++    I 
Sbjct: 72  TINNIHA--TNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSIL 129

Query: 625 GNISSLQELTLLNLSYNS 642
             I++L ++  ++LSYN 
Sbjct: 130 TKINTLPKVNSIDLSYNG 147

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 45.7 bits (109), Expect = 1e-05
 Identities = 16/76 (21%), Positives = 33/76 (43%), Gaps = 3/76 (3%)

Query: 566 DLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPG 625
            L++  +  T   G+     ++ L ++          +  L +L  L +    +T     
Sbjct: 50  TLANINV--TDLTGIEYAHNIKDLTINNIHA-TNYNPISGLSNLERLRIMGKDVTSDKIP 106

Query: 626 NISSLQELTLLNLSYN 641
           N+S L  LTLL++S++
Sbjct: 107 NLSGLTSLTLLDISHS 122

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 41.5 bits (98), Expect = 4e-04
 Identities = 18/79 (22%), Positives = 35/79 (44%), Gaps = 1/79 (1%)

Query: 86  SINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGV 145
            + +    ++    P L  L+ L  L +S +A    I T    L  + ++DLSYN  +  
Sbjct: 92  RLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD 151

Query: 146 VPDAIMKLRNLRELILKGN 164
           +   +  L  L+ L ++ +
Sbjct: 152 I-MPLKTLPELKSLNIQFD 169

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 80.8 bits (200), Expect = 3e-16
 Identities = 75/428 (17%), Positives = 134/428 (31%), Gaps = 75/428 (17%)

Query: 108 LEFLVLSSNAFT-GRISTCFGGLSGLKTLDLSYNKF----VGVVPDAIMKLRNLRELILK 162
           ++ L +     +  R +     L   + + L            +  A+     L EL L+
Sbjct: 5   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 64

Query: 163 GNPELGGVFPGWV------GNFSMNLEKLDFSFNSF----CGEIPESLYYLKSLKHLDLE 212
            N ELG    G           S  ++KL           CG +  +L  L +L+ L L 
Sbjct: 65  SN-ELGD--VGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLS 121

Query: 213 KNNLTGN-VHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSV----VGGIPT 267
            N L    +    + LL                      L  L+L+  S+       + +
Sbjct: 122 DNLLGDAGLQLLCEGLLDPQ-----------------CRLEKLQLEYCSLSAASCEPLAS 164

Query: 268 CIASLQALTHLNLSHNHLNYE----ISPRLVFFE-KLLLLDLSFNDLSGPLPSKIAQT-T 321
            + +      L +S+N +N      +   L     +L  L L    ++      +     
Sbjct: 165 VLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVA 224

Query: 322 EKAGLVLLDLSHNRFSGE-----IPLKITELKSLQALFLSNNLLIGEIPAR-----IGNL 371
            KA L  L L  N+          P  +     L+ L++     I           +   
Sbjct: 225 SKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWEC-GITAKGCGDLCRVLRAK 283

Query: 372 TYLQVIDLSHNMLSGSIPLNIV-----GCFQLLALIVNNNNLSGE----IQPELDALDSL 422
             L+ + L+ N L       +         QL +L V + + +          L     L
Sbjct: 284 ESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFL 343

Query: 423 KILDISNNQISGEIPLTLA-GLKS----LEIVDFSSNNLS----GSLNDAITKWTNLKYF 473
             L ISNN++       L  GL      L ++  +  ++S     SL   +    +L+  
Sbjct: 344 LELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLREL 403

Query: 474 SIARNKLS 481
            ++ N L 
Sbjct: 404 DLSNNCLG 411

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 77.3 bits (191), Expect = 4e-15
 Identities = 68/353 (19%), Positives = 123/353 (34%), Gaps = 50/353 (14%)

Query: 179 SMNLEKLDFSFNSFCGE-IPESLYYLKSLKHLDLEKNNLT-------GNVHDFYQSLLVL 230
           S++++ LD            E L  L+  + + L+   LT        +      +L  L
Sbjct: 2   SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 61

Query: 231 NLGSNRFSGT-----LPCFAASAMSLTVLKLDNNSV----VGGIPTCIASLQALTHLNLS 281
           NL SN          L      +  +  L L N  +     G + + + +L  L  L+LS
Sbjct: 62  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLS 121

Query: 282 HNHLNYEISPRLVFFE-----KLLLLDLSFNDLSGPLPSKIAQT-TEKAGLVLLDLSHNR 335
            N L       L         +L  L L +  LS      +A     K     L +S+N 
Sbjct: 122 DNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND 181

Query: 336 FSGEIPLKITE-LK----SLQALFLSNNLL----IGEIPARIGNLTYLQVIDLSHNMLSG 386
            +      + + LK     L+AL L +  +      ++   + +   L+ + L  N L  
Sbjct: 182 INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD 241

Query: 387 S-----IPLNIVGCFQLLALIVNNNNLSGE----IQPELDALDSLKILDISNNQISGEIP 437
                  P  +    +L  L +    ++ +    +   L A +SLK L ++ N++  E  
Sbjct: 242 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGA 301

Query: 438 LTLA-GLK----SLEIVDFSSNNLSG----SLNDAITKWTNLKYFSIARNKLS 481
             L   L      LE +   S + +       +  + +   L    I+ N+L 
Sbjct: 302 RLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLE 354

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 73.1 bits (180), Expect = 9e-14
 Identities = 82/465 (17%), Positives = 144/465 (30%), Gaps = 86/465 (18%)

Query: 86  SINLTDTSLSGQVHPRLCK-LSFLEFLVLSSNAFTGR----ISTCFGGLSGLKTLDLSYN 140
           S+++    LS      L   L   + + L     T      IS+       L  L+L  N
Sbjct: 7   SLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSN 66

Query: 141 KFVGVVPDAIMKL-----RNLRELILKGNPELGGVFPGWVGNFSM-----NLEKLDFSFN 190
           +   V    +++        +++L L+    L G   G     S       L++L  S N
Sbjct: 67  ELGDVGVHCVLQGLQTPSCKIQKLSLQNC-CLTGA--GCGVLSSTLRTLPTLQELHLSDN 123

Query: 191 SFCGEIPESLYYL-----KSLKHLDLEKNNLT-------GNVHDFYQSLLVLNLGSNRFS 238
                  + L          L+ L LE  +L+        +V         L + +N  +
Sbjct: 124 LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN 183

Query: 239 GT-----LPCFAASAMSLTVLKLDNNSV----VGGIPTCIASLQALTHLNLSHNHLNYE- 288
                        S   L  LKL++  V       +   +AS  +L  L L  N L    
Sbjct: 184 EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG 243

Query: 289 ----ISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQT-TEKAGLVLLDLSHNRFSGEIPLK 343
                   L    +L  L +    ++      + +    K  L  L L+ N    E    
Sbjct: 244 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARL 303

Query: 344 ITEL-----KSLQALFLSNNLLIGEIPAR-----IGNLTYLQVIDLSHNMLSGSIPLNIV 393
           + E        L++L++ +               +    +L  + +S+N L  +      
Sbjct: 304 LCETLLEPGCQLESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNNRLEDA------ 356

Query: 394 GCFQLLALIVNNN------NLSG-EIQPE--------LDALDSLKILDISNNQISGEIPL 438
           G  +L   +           L+  ++           L A  SL+ LD+SNN +     L
Sbjct: 357 GVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGIL 416

Query: 439 TLA-GLKS----LEIVDFSSNNLS----GSLNDAITKWTNLKYFS 474
            L   ++     LE +       S      L        +L+  S
Sbjct: 417 QLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVIS 461

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 60.4 bits (147), Expect = 1e-09
 Identities = 78/454 (17%), Positives = 133/454 (29%), Gaps = 94/454 (20%)

Query: 250 SLTVLKLDNNSV-VGGIPTCIASLQALTHLNLSHNHLNYE----ISPRLVFFEKLLLLDL 304
            +  L +    +        +  LQ    + L    L       IS  L     L  L+L
Sbjct: 4   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 63

Query: 305 SFNDLSGPLPSKIAQTTEKAGLVL--LDLSHNRFSGE----IPLKITELKSLQALFLSNN 358
             N+L       + Q  +     +  L L +   +G     +   +  L +LQ L LS+N
Sbjct: 64  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 123

Query: 359 LLIGEIPARI------GNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEI 412
           L +G+   ++           L+ + L +  LS +       C  L +++    +     
Sbjct: 124 L-LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAA------SCEPLASVLRAKPDF---- 172

Query: 413 QPELDALDSLKILDISNNQISGEIPLTLA-GLK----SLEIVDFSSNNLS----GSLNDA 463
                     K L +SNN I+      L  GLK     LE +   S  ++      L   
Sbjct: 173 ----------KELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGI 222

Query: 464 ITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSD 523
           +    +L+  ++  NKL             +       +             +L   +  
Sbjct: 223 VASKASLRELALGSNKLGDV------GMAELCPGLLHPSSR---------LRTLWIWECG 267

Query: 524 IG-RSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGTIPKGLFQ 582
           I  +       VL        S+  +    L+ N +L       L + LL          
Sbjct: 268 ITAKGCGDLCRVLRAK----ESLKELS---LAGN-ELGDEGARLLCETLLE--------P 311

Query: 583 LQGLEYLNLSFNFLDGQ-----VPGLYRLRSLRALDLSHNSLTGQ-----IPGNISSLQE 632
              LE L +                L + R L  L +S+N L          G       
Sbjct: 312 GCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSV 371

Query: 633 LTLLNLSYNSFSGFVPWKQGYQKFPGAFAGNPNL 666
           L +L L+    S                  N +L
Sbjct: 372 LRVLWLADCDVSD-----SSCSSLAATLLANHSL 400

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 78.6 bits (194), Expect = 4e-16
 Identities = 57/287 (19%), Positives = 104/287 (36%), Gaps = 50/287 (17%)

Query: 198 ESLYYLKSLKHLDLEKNNLTGNVH-DFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKL 256
            S          +L+K ++T  V  +   S+  +   ++                    +
Sbjct: 18  FSDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIK----------------SV 61

Query: 257 DNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSK 316
                       I  L  +T L L+ N L  +I P L   + L  L L  N +       
Sbjct: 62  QG----------IQYLPNVTKLFLNGNKLT-DIKP-LANLKNLGWLFLDENKV-----KD 104

Query: 317 IAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQV 376
           ++   +   L  L L HN  S    L    L  L++L+L NN  I +I   +  LT L  
Sbjct: 105 LSSLKDLKKLKSLSLEHNGISDINGLV--HLPQLESLYLGNN-KITDITV-LSRLTKLDT 160

Query: 377 IDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEI 436
           + L  N +S  I   + G  +L  L ++ N++S +++  L  L +L +L++ + +   + 
Sbjct: 161 LSLEDNQIS-DIV-PLAGLTKLQNLYLSKNHIS-DLRA-LAGLKNLDVLELFSQECLNKP 216

Query: 437 PLTLAGLKSLEIVDFSSNNLS--------GSLNDAITKWTNLKYFSI 475
               + L     V  +  +L         G       KW   ++ + 
Sbjct: 217 INHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNE 263

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 77.4 bits (191), Expect = 1e-15
 Identities = 51/220 (23%), Positives = 90/220 (40%), Gaps = 19/220 (8%)

Query: 269 IASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVL 328
             +       NL    +  +          +  +  + +D+       +        +  
Sbjct: 20  DDAFAETIKDNLKKKSVT-DAVT-QNELNSIDQIIANNSDIK-----SVQGIQYLPNVTK 72

Query: 329 LDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSI 388
           L L+ N+ +   PL    LK+L  LFL  N  + ++ + + +L  L+ + L HN +S  I
Sbjct: 73  LFLNGNKLTDIKPLA--NLKNLGWLFLDENK-VKDLSS-LKDLKKLKSLSLEHNGIS-DI 127

Query: 389 PLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEI 448
              +V   QL +L + NN ++ +I   L  L  L  L + +NQIS  +PL  AGL  L+ 
Sbjct: 128 N-GLVHLPQLESLYLGNNKIT-DITV-LSRLTKLDTLSLEDNQISDIVPL--AGLTKLQN 182

Query: 449 VDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWL 488
           +  S N++S  L  A+    NL    +   +      N  
Sbjct: 183 LYLSKNHIS-DL-RALAGLKNLDVLELFSQECLNKPINHQ 220

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 68.9 bits (169), Expect = 7e-13
 Identities = 39/178 (21%), Positives = 74/178 (41%), Gaps = 14/178 (7%)

Query: 326 LVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLS 385
            +  +L     +  +     EL S+  +  +N+  I  +   I  L  +  + L+ N L+
Sbjct: 26  TIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSD-IKSVQG-IQYLPNVTKLFLNGNKLT 81

Query: 386 GSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKS 445
              PL       L  L ++ N +  ++   L  L  LK L + +N IS +I   L  L  
Sbjct: 82  DIKPLA--NLKNLGWLFLDENKVK-DLSS-LKDLKKLKSLSLEHNGIS-DIN-GLVHLPQ 135

Query: 446 LEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNK 503
           LE +   +N ++      +++ T L   S+  N++S ++   L     +Q +  S N 
Sbjct: 136 LESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS-DIVP-LAGLTKLQNLYLSKNH 189

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 65.5 bits (160), Expect = 1e-11
 Identities = 51/287 (17%), Positives = 94/287 (32%), Gaps = 46/287 (16%)

Query: 128 GLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDF 187
             +     +L        V     +L ++ ++I   +                +++ +  
Sbjct: 22  AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNS----------------DIKSV-- 61

Query: 188 SFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQ--SLLVLNLGSNRFSGTLPCFA 245
                     + + YL ++  L L  N LT ++       +L  L L  N+    L    
Sbjct: 62  ----------QGIQYLPNVTKLFLNGNKLT-DIKPLANLKNLGWLFLDENKVK-DLSSLK 109

Query: 246 ASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLS 305
                L  L L++N +       +  L  L  L L +N +  +I+  L    KL  L L 
Sbjct: 110 DLK-KLKSLSLEHNGIS--DINGLVHLPQLESLYLGNNKIT-DITV-LSRLTKLDTLSLE 164

Query: 306 FNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIP 365
            N +S      I        L  L LS N  S    L    LK+L  L L +   + +  
Sbjct: 165 DNQIS-----DIVPLAGLTKLQNLYLSKNHISDLRALA--GLKNLDVLELFSQECLNKPI 217

Query: 366 ARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEI 412
               NL     +  +   L     ++  G ++   +  +    + E+
Sbjct: 218 NHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEV 264

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 52.0 bits (125), Expect = 2e-07
 Identities = 45/246 (18%), Positives = 88/246 (35%), Gaps = 45/246 (18%)

Query: 400 ALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGS 459
             I     +  +I    DA       ++    ++  +      L S++ +  +++++  S
Sbjct: 6   ETITVPTPIK-QIFS-DDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-S 60

Query: 460 LNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDGNF----NF 515
           +   I    N+    +  NKL+ ++   L + + +  +    NK        +     + 
Sbjct: 61  V-QGIQYLPNVTKLFLNGNKLT-DIKP-LANLKNLGWLFLDENKVKDLSSLKDLKKLKSL 117

Query: 516 SLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGT 575
           SL  N                      IS    D N L    QL     + L +N +  T
Sbjct: 118 SLEHN---------------------GIS----DINGLVHLPQL---ESLYLGNNKI--T 147

Query: 576 IPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQELTL 635
               L +L  L+ L+L  N +   +  L  L  L+ L LS N ++  +   ++ L+ L +
Sbjct: 148 DITVLSRLTKLDTLSLEDNQIS-DIVPLAGLTKLQNLYLSKNHIS-DLRA-LAGLKNLDV 204

Query: 636 LNLSYN 641
           L L   
Sbjct: 205 LELFSQ 210

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 41.6 bits (98), Expect = 5e-04
 Identities = 18/79 (22%), Positives = 36/79 (45%), Gaps = 5/79 (6%)

Query: 566 DLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPG 625
             +++ +     +G+  L  +  L L+ N L   +  L  L++L  L L  N +   +  
Sbjct: 52  IANNSDI--KSVQGIQYLPNVTKLFLNGNKLT-DIKPLANLKNLGWLFLDENKVK-DLSS 107

Query: 626 NISSLQELTLLNLSYNSFS 644
            +  L++L  L+L +N  S
Sbjct: 108 -LKDLKKLKSLSLEHNGIS 125

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 75.6 bits (185), Expect = 2e-14
 Identities = 36/194 (18%), Positives = 72/194 (37%), Gaps = 12/194 (6%)

Query: 265 IPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKA 324
           + + + S + L  L   +      I   +   + LL    +    S        +  +  
Sbjct: 364 LQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTL------KAVDPM 417

Query: 325 GLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNML 384
               LD   ++F  E  +   E   ++ L L++  L   +   +  L  +  +DLSHN L
Sbjct: 418 RAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRL 475

Query: 385 SGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISG-EIPLTLAGL 443
             ++P  +     L  L  ++N L   +   +  L  L+ L + NN++        L   
Sbjct: 476 R-ALPPALAALRCLEVLQASDNALE-NV-DGVANLPRLQELLLCNNRLQQSAAIQPLVSC 532

Query: 444 KSLEIVDFSSNNLS 457
             L +++   N+L 
Sbjct: 533 PRLVLLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 63.2 bits (153), Expect = 1e-10
 Identities = 49/250 (19%), Positives = 79/250 (31%), Gaps = 10/250 (4%)

Query: 395 CFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSN 454
              L A  +N+       +      DS K   +  ++         A  + L   + S  
Sbjct: 301 LCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRD-SATDEQLFRCELSVE 359

Query: 455 NLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIP-DGNF 513
             +  L   +     L+            +   + +   +     +   F      D   
Sbjct: 360 KST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMR 418

Query: 514 NFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVGMDLSDNLLH 573
              L+  +S                 V+ ++   +    L    QL     +DLS N L 
Sbjct: 419 AAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTV--LCHLEQLLLVTHLDLSHNRLR 476

Query: 574 GTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPG--NISSLQ 631
             +P  L  L+ LE L  S N L+  V G+  L  L+ L L +N L  Q      + S  
Sbjct: 477 -ALPPALAALRCLEVLQASDNALE-NVDGVANLPRLQELLLCNNRLQ-QSAAIQPLVSCP 533

Query: 632 ELTLLNLSYN 641
            L LLNL  N
Sbjct: 534 RLVLLNLQGN 543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 55.1 bits (132), Expect = 5e-08
 Identities = 39/212 (18%), Positives = 62/212 (29%), Gaps = 36/212 (16%)

Query: 9   VHSCRALKLQMLPLLLFLLLLCSNPSESLELNLEDKASLLLFKSLVQDPTQKLSSWVGSN 68
           + SC+ L+         LL +         L  E +           DP +        +
Sbjct: 368 LESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRS 427

Query: 69  CTNWTGVACNFQTGHVVSINLTD---TSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTC 125
                      +   V  ++L     T L       L +L  +  L LS N     +   
Sbjct: 428 KFLLENSVLKMEYADVRVLHLAHKDLTVLCH-----LEQLLLVTHLDLSHNRLR-ALPPA 481

Query: 126 FGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKL 185
              L  L+ L  S N    V  D +  L  L+EL+L  N                 L++ 
Sbjct: 482 LAALRCLEVLQASDNALENV--DGVANLPRLQELLLCNN----------------RLQQS 523

Query: 186 DFSFNSFCGEIPESLYYLKSLKHLDLEKNNLT 217
                       + L     L  L+L+ N+L 
Sbjct: 524 ---------AAIQPLVSCPRLVLLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 46.3 bits (109), Expect = 3e-05
 Identities = 59/367 (16%), Positives = 103/367 (28%), Gaps = 63/367 (17%)

Query: 275 LTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAG------LVL 328
             H++     L+   S  L    ++  L L  ++    +  +      +        L  
Sbjct: 247 CVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSHVWLCDLPA 306

Query: 329 LDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSI 388
             L+         +  T   S +   L  +               L   +LS    +  +
Sbjct: 307 ASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECW-CRDSATDEQLFRCELSVEKST-VL 364

Query: 389 PLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEI 448
              +  C +L  L   N      I   + ALD L     +    S    L          
Sbjct: 365 QSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFST---LKAVDPMRAAY 421

Query: 449 VDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFI 508
           +D   +      +    ++ +++   +A   L+  L + L     +  +D S N+     
Sbjct: 422 LDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT-VLCH-LEQLLLVTHLDLSHNRL---- 475

Query: 509 PDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVGMDLS 568
                            R++P                       L+    L     +  S
Sbjct: 476 -----------------RALP---------------------PALAALRCL---EVLQAS 494

Query: 569 DNLLHGTIPKGLFQLQGLEYLNLSFNFLDG--QVPGLYRLRSLRALDLSHNSLTGQIPGN 626
           DN L      G+  L  L+ L L  N L     +  L     L  L+L  NSL  Q  G 
Sbjct: 495 DNAL--ENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC-QEEGI 551

Query: 627 ISSLQEL 633
              L E+
Sbjct: 552 QERLAEM 558

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 71.2 bits (175), Expect = 8e-14
 Identities = 41/191 (21%), Positives = 70/191 (36%), Gaps = 18/191 (9%)

Query: 267 TCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGL 326
                L      NL    +  ++         +   +   +++       +A       L
Sbjct: 13  FPDPGLANAVKQNLGKQSVT-DLVS-QKELSGVQNFNGDNSNIQ-----SLAGMQFFTNL 65

Query: 327 VLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSG 386
             L LSHN+ S   PLK  +L  L+ L ++ N  +  +   I +   L  + L +N L  
Sbjct: 66  KELHLSHNQISDLSPLK--DLTKLEELSVNRNR-LKNLNG-IPSAC-LSRLFLDNNELRD 120

Query: 387 SIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSL 446
           +  L       L  L + NN L   I   L  L  L++LD+  N+I+      L  LK +
Sbjct: 121 TDSLI--HLKNLEILSIRNNKLK-SIVM-LGFLSKLEVLDLHGNEITNTGG--LTRLKKV 174

Query: 447 EIVDFSSNNLS 457
             +D +     
Sbjct: 175 NWIDLTGQKCV 185

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 57.3 bits (139), Expect = 4e-09
 Identities = 28/138 (20%), Positives = 57/138 (41%), Gaps = 11/138 (7%)

Query: 344 ITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIV 403
              L +     L     + ++ +    L+ +Q  +  ++ +  S+   +     L  L +
Sbjct: 15  DPGLANAVKQNLGKQS-VTDLVS-QKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHL 70

Query: 404 NNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDA 463
           ++N +S ++ P L  L  L+ L ++ N++     +  A L  L      +N L     D+
Sbjct: 71  SHNQIS-DLSP-LKDLTKLEELSVNRNRLKNLNGIPSACLSRL---FLDNNELRD--TDS 123

Query: 464 ITKWTNLKYFSIARNKLS 481
           +    NL+  SI  NKL 
Sbjct: 124 LIHLKNLEILSIRNNKLK 141

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 55.0 bits (133), Expect = 2e-08
 Identities = 46/260 (17%), Positives = 85/260 (32%), Gaps = 47/260 (18%)

Query: 128 GLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDF 187
           GL+     +L            +  L + +EL                      ++  + 
Sbjct: 17  GLANAVKQNLGKQS--------VTDLVSQKELS--------------------GVQNFNG 48

Query: 188 SFNSFCGEIPESLYYLKSLKHLDLEKNNLT--GNVHDFYQSLLVLNLGSNRFSGTLPCFA 245
             ++   +    + +  +LK L L  N ++    + D    L  L++  NR         
Sbjct: 49  DNSNI--QSLAGMQFFTNLKELHLSHNQISDLSPLKDL-TKLEELSVNRNRLKNLNGI-- 103

Query: 246 ASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLS 305
             +  L+ L LDNN +       +  L+ L  L++ +N L   I   L F  KL +LDL 
Sbjct: 104 -PSACLSRLFLDNNELRD--TDSLIHLKNLEILSIRNNKLK-SIVM-LGFLSKLEVLDLH 158

Query: 306 FNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIP 365
            N++     +     T    +  +DL+  +   E      EL     +   +   I   P
Sbjct: 159 GNEI-----TNTGGLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRWIS--P 211

Query: 366 ARIGNLTYLQVIDLSHNMLS 385
             I N        +   +  
Sbjct: 212 YYISNGGSYVDGCVLWELPV 231

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 52.3 bits (126), Expect = 2e-07
 Identities = 40/241 (16%), Positives = 89/241 (36%), Gaps = 39/241 (16%)

Query: 401 LIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSL 460
            I     ++ ++ P    L +    ++    ++  +      L  ++  +  ++N+  SL
Sbjct: 2   SIQRPTPIN-QVFP-DPGLANAVKQNLGKQSVTDLVSQ--KELSGVQNFNGDNSNIQ-SL 56

Query: 461 NDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDGNFNFSLNFN 520
              +  +TNLK   ++ N++S +L   L     ++ +  + N+    + + N   S   +
Sbjct: 57  -AGMQFFTNLKELHLSHNQIS-DLSP-LKDLTKLEELSVNRNR----LKNLNGIPSACLS 109

Query: 521 KSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGTIPKGL 580
           +  +  +               +     DT+ L     L     + + +N L       L
Sbjct: 110 RLFLDNN--------------ELR----DTDSLIHLKNLEI---LSIRNNKL--KSIVML 146

Query: 581 FQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSY 640
             L  LE L+L  N +     GL RL+ +  +DL+      +    +    EL + N   
Sbjct: 147 GFLSKLEVLDLHGNEIT-NTGGLTRLKKVNWIDLTGQKCVNE---PVKYQPELYITNTVK 202

Query: 641 N 641
           +
Sbjct: 203 D 203

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 41.2 bits (97), Expect = 7e-04
 Identities = 31/137 (22%), Positives = 48/137 (35%), Gaps = 23/137 (16%)

Query: 102 LCKLSFLEFLVLSSNAFTGRIST-CFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELI 160
           L  L+ LE L ++ N    R+        + L  L L  N+      D+++ L+NL  L 
Sbjct: 81  LKDLTKLEELSVNRN----RLKNLNGIPSACLSRLFLDNNELRDT--DSLIHLKNLEILS 134

Query: 161 LKGN-----PELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNN 215
           ++ N       LG +           LE LD   N         L  LK +  +DL    
Sbjct: 135 IRNNKLKSIVMLGFL---------SKLEVLDLHGNEIT-NT-GGLTRLKKVNWIDLTGQK 183

Query: 216 LTGNVHDFYQSLLVLNL 232
                  +   L + N 
Sbjct: 184 CVNEPVKYQPELYITNT 200

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 70.6 bits (173), Expect = 4e-13
 Identities = 48/191 (25%), Positives = 76/191 (39%), Gaps = 23/191 (12%)

Query: 302 LDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKIT--ELKSLQALFLSNNL 359
           L  S   L   +P  +   T       LDLSHN  S  +  + T   L +L +L LS+N 
Sbjct: 23  LSCSKQQLPN-VPQSLPSYTAL-----LDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNH 75

Query: 360 LIGEIPARI-GNLTYLQVIDLSHNMLSGSIPLNI-VGCFQLLALIVNNNNLSGEIQPE-L 416
            +  I +     +  L+ +DLS N L  ++   +      L  L++ NN++   +     
Sbjct: 76  -LNFISSEAFVPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIV-VVDRNAF 132

Query: 417 DALDSLKILDISNNQISGEIP----LTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKY 472
           + +  L+ L +S NQIS   P         L  L ++D SSN L       + K      
Sbjct: 133 EDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVK 191

Query: 473 FSIARNKLSGN 483
             +    L  N
Sbjct: 192 NGL---YLHNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 64.5 bits (157), Expect = 3e-11
 Identities = 44/200 (22%), Positives = 78/200 (39%), Gaps = 41/200 (20%)

Query: 264 GIPTCIASLQALTHLNLSHNHLNYEISPRLVF--FEKLLLLDLSFNDLSGPLPSKI-AQT 320
            +P+          L+LSHN+L+  +           L  L LS N L+  + S+     
Sbjct: 36  SLPS------YTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLNF-ISSEAFVPV 87

Query: 321 TEKAGLVLLDLSHNRFSGEIPLKI-TELKSLQALFLSNNLLIGEIPARI-GNLTYLQVID 378
                L  LDLS N     +   + ++L++L+ L L NN  I  +      ++  LQ + 
Sbjct: 88  PN---LRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNH-IVVVDRNAFEDMAQLQKLY 142

Query: 379 LSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPL 438
           LS N +S   P+ +    +                 + + L  L +LD+S+N++      
Sbjct: 143 LSQNQIS-RFPVEL---IK-----------------DGNKLPKLMLLDLSSNKLKKLPLT 181

Query: 439 TLAGLKSL--EIVDFSSNNL 456
            L  L +     +   +N L
Sbjct: 182 DLQKLPAWVKNGLYLHNNPL 201

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 60.2 bits (146), Expect = 8e-10
 Identities = 38/146 (26%), Positives = 49/146 (33%), Gaps = 18/146 (12%)

Query: 104 KLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKG 163
           +L+ L  L+LS N      S  F  +  L+ LDLS N    +       L+ L  L+L  
Sbjct: 62  RLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYN 121

Query: 164 NP--EL-GGVFPGWVGNFSMNLEKLDFSFNSFCGEIPE----SLYYLKSLKHLDLEKNNL 216
           N    +    F          L+KL  S N      P         L  L  LDL  N L
Sbjct: 122 NHIVVVDRNAFEDMA-----QLQKLYLSQNQI-SRFPVELIKDGNKLPKLMLLDLSSNKL 175

Query: 217 TGNVHDFYQSL-----LVLNLGSNRF 237
                   Q L       L L +N  
Sbjct: 176 KKLPLTDLQKLPAWVKNGLYLHNNPL 201

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 52.9 bits (127), Expect = 2e-07
 Identities = 47/170 (27%), Positives = 65/170 (38%), Gaps = 14/170 (8%)

Query: 177 NFSMNLEKLDFSFNSFCGEIP--ESLYYLKSLKHLDLEKNNLT---GNVHDFYQSLLVLN 231
           +       LD S N+    +    +   L +L  L L  N+L            +L  L+
Sbjct: 36  SLPSYTALLDLSHNNL-SRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLD 94

Query: 232 LGSNRFSGTLPCFAASAM-SLTVLKLDNNSVVGGIPTCI-ASLQALTHLNLSHNHLNY-- 287
           L SN    TL  F  S + +L VL L NN +V  +       +  L  L LS N ++   
Sbjct: 95  LSSNHLH-TLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQISRFP 152

Query: 288 -EISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRF 336
            E+        KL+LLDLS N L   LP    Q         L L +N  
Sbjct: 153 VELIKDGNKLPKLMLLDLSSNKLKK-LPLTDLQKLPAWVKNGLYLHNNPL 201

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 52.5 bits (126), Expect = 2e-07
 Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 8/85 (9%)

Query: 566 DLSDNLLHGTIPKGLFQ-LQGLEYLNLSFNFLDGQVPGLYR-LRSLRALDLSHNSLTGQI 623
           DLS N LH T+ + LF  LQ LE L L  N +       +  +  L+ L LS N ++ + 
Sbjct: 94  DLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RF 151

Query: 624 P----GNISSLQELTLLNLSYNSFS 644
           P     + + L +L LL+LS N   
Sbjct: 152 PVELIKDGNKLPKLMLLDLSSNKLK 176

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 48.7 bits (116), Expect = 4e-06
 Identities = 31/104 (29%), Positives = 38/104 (36%), Gaps = 13/104 (12%)

Query: 566 DLSDNLLHGTIPKGLFQ-LQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQI 623
           DLS N L     +     L  L  L LS N L+         + +LR LDLS N L   +
Sbjct: 45  DLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLH-TL 103

Query: 624 PGNI-SSLQELTLLNLSYNSFSGFVPWKQGYQKFPGAFAGNPNL 666
              + S LQ L +L L  N     V           AF     L
Sbjct: 104 DEFLFSDLQALEVLLLYNNHIV-VVD--------RNAFEDMAQL 138

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 46.0 bits (109), Expect = 3e-05
 Identities = 18/79 (22%), Positives = 30/79 (37%), Gaps = 6/79 (7%)

Query: 566 DLSDNLLHGTIPKGLFQ-LQGLEYLNLSFNFL----DGQVPGLYRLRSLRALDLSHNSLT 620
            L +N +   + +  F+ +  L+ L LS N +       +    +L  L  LDLS N L 
Sbjct: 118 LLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK 176

Query: 621 GQIPGNISSLQELTLLNLS 639
                ++  L       L 
Sbjct: 177 KLPLTDLQKLPAWVKNGLY 195

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 68.6 bits (168), Expect = 8e-13
 Identities = 47/202 (23%), Positives = 73/202 (36%), Gaps = 12/202 (5%)

Query: 302 LDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLI 361
           ++    +L+  LP  + + T       L LS N         +     L  L L    L 
Sbjct: 15  VNCDKRNLTA-LPPDLPKDTTI-----LHLSENLLYTFSLATLMPYTRLTQLNLDRAEL- 67

Query: 362 GEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPEL-DALD 420
            ++    G L  L  +DLSHN L  S+PL       L  L V+ N L+  +       L 
Sbjct: 68  TKLQV-DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLG 124

Query: 421 SLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKL 480
            L+ L +  N++    P  L     LE +  ++NNL+      +    NL    +  N L
Sbjct: 125 ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184

Query: 481 SGNLPNWLFSFQAIQMMDFSTN 502
              +P   F    +       N
Sbjct: 185 Y-TIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 67.8 bits (166), Expect = 2e-12
 Identities = 51/208 (24%), Positives = 75/208 (36%), Gaps = 37/208 (17%)

Query: 250 SLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHL-NYEISPRLVFFEKLLLLDLSFND 308
             T+L L  N +       +     LT LNL    L   ++   L     L  LDLS N 
Sbjct: 32  DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLP---VLGTLDLSHNQ 88

Query: 309 LSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKI-TELKSLQALFLSNNLLIGEIPAR 367
           L   LP           L +LD+S NR +  +PL     L  LQ L+L  N L   +P  
Sbjct: 89  LQS-LPLLGQTLPA---LTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNEL-KTLPPG 142

Query: 368 I-GNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILD 426
           +      L+ + L++N L+  +P  +                       L+ L++L  L 
Sbjct: 143 LLTPTPKLEKLSLANNNLT-ELPAGL-----------------------LNGLENLDTLL 178

Query: 427 ISNNQISGEIPLTLAGLKSLEIVDFSSN 454
           +  N +   IP    G   L       N
Sbjct: 179 LQENSLYT-IPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 55.5 bits (134), Expect = 2e-08
 Identities = 42/183 (22%), Positives = 58/183 (31%), Gaps = 17/183 (9%)

Query: 108 LEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNP-- 165
              L LS N             + L  L+L   +   +       L  L  L L  N   
Sbjct: 33  TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL--QVDGTLPVLGTLDLSHNQLQ 90

Query: 166 ELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYY-LKSLKHLDLEKNNLT---GNVH 221
            L  +           L  LD SFN     +P      L  L+ L L+ N L      + 
Sbjct: 91  SLPLLGQTLP-----ALTVLDVSFNRL-TSLPLGALRGLGELQELYLKGNELKTLPPGLL 144

Query: 222 DFYQSLLVLNLGSNRFSGTLPCFAASAM-SLTVLKLDNNSVVGGIPTCIASLQALTHLNL 280
                L  L+L +N  +  LP    + + +L  L L  NS+   IP        L    L
Sbjct: 145 TPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFL 202

Query: 281 SHN 283
             N
Sbjct: 203 HGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 55.1 bits (133), Expect = 3e-08
 Identities = 44/159 (27%), Positives = 62/159 (38%), Gaps = 20/159 (12%)

Query: 88  NLTDTSLSG---QVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVG 144
            LT  +L             L  L  L LS N     +      L  L  LD+S+N+   
Sbjct: 56  RLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTS 114

Query: 145 VVPDAIMKLRNLRELILKGN-----PELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPES 199
           +   A+  L  L+EL LKGN     P   G+           LEKL  + N+   E+P  
Sbjct: 115 LPLGALRGLGELQELYLKGNELKTLPP--GLLTPTP-----KLEKLSLANNNL-TELPAG 166

Query: 200 LY-YLKSLKHLDLEKNNLTGNVHDFY--QSLLVLNLGSN 235
           L   L++L  L L++N+L      F+    L    L  N
Sbjct: 167 LLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 53.6 bits (129), Expect = 8e-08
 Identities = 41/162 (25%), Positives = 51/162 (31%), Gaps = 14/162 (8%)

Query: 130 SGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNP-ELGGVFPGWVGNFSMNLEKLDFS 188
                L LS N         +M    L +L L         V           L  LD S
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLP-----VLGTLDLS 85

Query: 189 FNSFCGEIPESLYYLKSLKHLDLEKNNLTG---NVHDFYQSLLVLNLGSNRFSGTLPCFA 245
            N     +P     L +L  LD+  N LT            L  L L  N    TLP   
Sbjct: 86  HNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGL 143

Query: 246 -ASAMSLTVLKLDNNSVVGGIPTCI-ASLQALTHLNLSHNHL 285
                 L  L L NN++   +P  +   L+ L  L L  N L
Sbjct: 144 LTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSL 184

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 51.3 bits (123), Expect = 5e-07
 Identities = 32/102 (31%), Positives = 43/102 (42%), Gaps = 13/102 (12%)

Query: 566 DLSDNLLHGTIPKGLF-QLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIP 624
            LS+NLL  T           L  LNL    L  ++     L  L  LDLSHN L   +P
Sbjct: 37  HLSENLL-YTFSLATLMPYTRLTQLNLDRAEL-TKLQVDGTLPVLGTLDLSHNQLQ-SLP 93

Query: 625 GNISSLQELTLLNLSYNSFSGFVPWKQGYQKFPGAFAGNPNL 666
               +L  LT+L++S+N  +  +P         GA  G   L
Sbjct: 94  LLGQTLPALTVLDVSFNRLT-SLP--------LGALRGLGEL 126

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 45.1 bits (107), Expect = 4e-05
 Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 5/79 (6%)

Query: 566 DLSDNLLHGTIPKGLF-QLQGLEYLNLSFNFLDGQVPGLY-RLRSLRALDLSHNSLTGQI 623
           D+S N L  ++P G    L  L+ L L  N L    PGL      L  L L++N+LT ++
Sbjct: 106 DVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-EL 163

Query: 624 PGNI-SSLQELTLLNLSYN 641
           P  + + L+ L  L L  N
Sbjct: 164 PAGLLNGLENLDTLLLQEN 182

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 45.1 bits (107), Expect = 4e-05
 Identities = 49/231 (21%), Positives = 70/231 (30%), Gaps = 57/231 (24%)

Query: 421 SLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKL 480
              IL +S N +      TL     L  ++     L+            L    ++ N+L
Sbjct: 32  DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL--QVDGTLPVLGTLDLSHNQL 89

Query: 481 SGNLPNWLFSFQAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMV 540
             +LP    +  A+ ++D S N+ +  +P G                             
Sbjct: 90  Q-SLPLLGQTLPALTVLDVSFNR-LTSLPLGALR-------------------------- 121

Query: 541 IRISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGTIPKGLFQ-LQGLEYLNLSFNFLDGQ 599
                             L     + L  N L  T+P GL      LE L+L+ N L   
Sbjct: 122 -----------------GLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLTEL 163

Query: 600 VPGLY-RLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVPW 649
             GL   L +L  L L  NSL   IP        L    L  N      PW
Sbjct: 164 PAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHGN------PW 207

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 43.2 bits (102), Expect = 1e-04
 Identities = 31/102 (30%), Positives = 44/102 (43%), Gaps = 11/102 (10%)

Query: 566 DLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLY-RLRSLRALDLSHNSLTGQIP 624
           DLS N L  ++P     L  L  L++SFN L     G    L  L+ L L  N L    P
Sbjct: 83  DLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPP 141

Query: 625 GNISSLQELTLLNLSYNSFSGFVPWKQGYQKFPGAFAGNPNL 666
           G ++   +L  L+L+ N+ +  +P         G   G  NL
Sbjct: 142 GLLTPTPKLEKLSLANNNLTE-LP--------AGLLNGLENL 174

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 69.5 bits (170), Expect = 9e-13
 Identities = 41/260 (15%), Positives = 78/260 (30%), Gaps = 40/260 (15%)

Query: 130 SGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSF 189
                L     K   +   A     +L ++ +  N  L  +      N    L ++    
Sbjct: 30  RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLP-KLHEIRIEK 88

Query: 190 NSFCGEIPES-LYYLKSLKHLDLEKNNLT---GNVHDFYQSLLVLNLGSNRFSGTLP--C 243
            +    I       L +L++L +    +              ++L++  N    T+    
Sbjct: 89  ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNS 148

Query: 244 FAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLD 303
           F   +    +L L+ N +     +     Q        +N+L  E+              
Sbjct: 149 FVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLE-ELPND----------- 196

Query: 304 LSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKI-TELKSLQALFLSNNLLIG 362
             F+  S              G V+LD+S  R    +P      LK L+A    N     
Sbjct: 197 -VFHGAS--------------GPVILDISRTRIH-SLPSYGLENLKKLRARSTYNL---K 237

Query: 363 EIPARIGNLTYLQVIDLSHN 382
           ++P  +  L  L    L++ 
Sbjct: 238 KLPT-LEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 68.7 bits (168), Expect = 1e-12
 Identities = 45/297 (15%), Positives = 98/297 (32%), Gaps = 60/297 (20%)

Query: 329 LDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARI-GNLTYLQVIDLSHNMLSGS 387
                ++ + EIP  +   ++   L       +  I          L+ I++S N +   
Sbjct: 14  FLCQESKVT-EIPSDL--PRNAIELRFVLTK-LRVIQKGAFSGFGDLEKIEISQNDVLEV 69

Query: 388 IPLNI-VGCFQLLALIVNNNNLSGEIQPE-LDALDSLKILDISNNQISGEIP-LTLAGLK 444
           I  ++     +L  + +   N    I PE    L +L+ L ISN  I   +P +      
Sbjct: 70  IEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSL 128

Query: 445 SLEIVDFSSNNLSGSL-NDAITKWT-NLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTN 502
              ++D   N    ++  ++    +       + +N +   + N  F+   +  ++ S N
Sbjct: 129 QKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDN 187

Query: 503 KFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSA 562
             +  +P+  F                                           +     
Sbjct: 188 NNLEELPNDVF-------------------------------------------HGASGP 204

Query: 563 VGMDLSDNLLHGTIPKGLFQ-LQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNS 618
           V +D+S   +H ++P    + L+ L   +        ++P L +L +L    L++ S
Sbjct: 205 VILDISRTRIH-SLPSYGLENLKKLRARSTYNLK---KLPTLEKLVALMEASLTYPS 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 66.0 bits (161), Expect = 9e-12
 Identities = 33/172 (19%), Positives = 67/172 (38%), Gaps = 11/172 (6%)

Query: 326 LVLLDLSHNRFSGEIPLKI-TELKSLQALFLSNNLLIGEIPARI-GNLTYLQVIDLSHNM 383
           L  +++S N     I   + + L  L  + +     +  I      NL  LQ + +S+  
Sbjct: 56  LEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTG 115

Query: 384 LSGSIP-LNIVGCFQLLALIVNNNNLSGEIQPELDALDSL----KILDISNNQISGEIPL 438
           +   +P ++ +   Q + L + +N     I+   ++   L     IL ++ N I      
Sbjct: 116 IK-HLPDVHKIHSLQKVLLDIQDNINIHTIER--NSFVGLSFESVILWLNKNGIQEIHNS 172

Query: 439 TLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFS 490
              G +  E+    +NNL    ND     +      I+R ++  +LP++   
Sbjct: 173 AFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSYGLE 223

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 56.8 bits (137), Expect = 1e-08
 Identities = 31/162 (19%), Positives = 60/162 (37%), Gaps = 9/162 (5%)

Query: 126 FGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKL 185
           F  L  L+ L +S      +     +       L ++ N  +  +        S     L
Sbjct: 100 FQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVIL 159

Query: 186 DFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHD--FY--QSLLVLNLGSNRFSGTL 241
             + N    EI  S +    L  L+L  NN    + +  F+     ++L++   R   +L
Sbjct: 160 WLNKNGI-QEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SL 217

Query: 242 PCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHN 283
           P  +    +L  L+  +   +  +PT +  L AL   +L++ 
Sbjct: 218 P--SYGLENLKKLRARSTYNLKKLPT-LEKLVALMEASLTYP 256

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 67.7 bits (166), Expect = 1e-12
 Identities = 47/217 (21%), Positives = 75/217 (34%), Gaps = 23/217 (10%)

Query: 250 SLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVF--FEKLLLLDLSFN 307
           S   L L  N +         S   L  L+LS   +         +     L  L L+ N
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI--EDGAYQSLSHLSTLILTGN 86

Query: 308 DLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKI-TELKSLQALFLSNNLLIGEIPA 366
            +   L            L  L       +  +       LK+L+ L +++NL+      
Sbjct: 87  PIQS-LALGAFSGLSS--LQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLP 142

Query: 367 RI-GNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLA--------LIVNNNNLSGEIQPELD 417
               NLT L+ +DLS N +  SI        ++L         L ++ N ++  IQP   
Sbjct: 143 EYFSNLTNLEHLDLSSNKIQ-SIY---CTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAF 197

Query: 418 ALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSN 454
               LK L +  NQ+          L SL+ +   +N
Sbjct: 198 KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 65.8 bits (161), Expect = 7e-12
 Identities = 43/188 (22%), Positives = 71/188 (37%), Gaps = 11/188 (5%)

Query: 104 KLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKG 163
               L+ L LS           +  LS L TL L+ N    +   A   L +L++L+   
Sbjct: 50  SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 109

Query: 164 NPELGGVFPGWVGNFSMNLEKLDFSFNSFCG-EIPESLYYLKSLKHLDLEKNNLT---GN 219
              L  +    +G+    L++L+ + N     ++PE    L +L+HLDL  N +      
Sbjct: 110 TN-LASLENFPIGHLK-TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 167

Query: 220 VHDFYQSL----LVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQAL 275
                  +    L L+L  N  +  +   A   + L  L LD N +          L +L
Sbjct: 168 DLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSL 226

Query: 276 THLNLSHN 283
             + L  N
Sbjct: 227 QKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 61.9 bits (151), Expect = 1e-10
 Identities = 63/278 (22%), Positives = 89/278 (32%), Gaps = 76/278 (27%)

Query: 108 LEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPEL 167
            + L LS N      S  F     L+ LDLS  +   +   A   L +L  LIL GNP  
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-- 87

Query: 168 GGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSL 227
                         ++ L             +   L SL+ L   + NL           
Sbjct: 88  --------------IQSLA----------LGAFSGLSSLQKLVAVETNLA---------- 113

Query: 228 LVLNLGSNRFSGTLPCFAASAM-SLTVLKLDNNSV-VGGIPTCIASLQALTHLNLSHNHL 285
                       +L  F    + +L  L + +N +    +P   ++L  L HL+LS N +
Sbjct: 114 ------------SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161

Query: 286 NYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKIT 345
              I         L  + L                        LDLS N  +  I     
Sbjct: 162 QS-IYCTD--LRVLHQMPLLNLS--------------------LDLSLNPMN-FIQPGAF 197

Query: 346 ELKSLQALFLSNNLLIGEIPARI-GNLTYLQVIDLSHN 382
           +   L+ L L  N L   +P  I   LT LQ I L  N
Sbjct: 198 KEIRLKELALDTNQL-KSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 61.5 bits (150), Expect = 1e-10
 Identities = 47/227 (20%), Positives = 90/227 (39%), Gaps = 29/227 (12%)

Query: 264 GIPTCIASLQALTHLNLSHNHLNYEISPRLVF--FEKLLLLDLSFNDLSGPLPSKI-AQT 320
            +P       +  +L+LS N L   +     F  F +L +LDLS  ++   +        
Sbjct: 25  NLPF------STKNLDLSFNPLR-HLGSY-SFFSFPELQVLDLSRCEIQT-IEDGAYQSL 75

Query: 321 TEKAGLVLLDLSHNRFSGEIPLKI-TELKSLQALFLSNNLLIGEIPARI-GNLTYLQVID 378
           +    L  L L+ N     + L   + L SLQ L       +  +     G+L  L+ ++
Sbjct: 76  SH---LSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELN 130

Query: 379 LSHNMLSGSIPLNIV--GCFQLLALIVNNNNLSGEIQPE-LDALDSLKI----LDISNNQ 431
           ++HN++  S  L         L  L +++N +   I    L  L  + +    LD+S N 
Sbjct: 131 VAHNLIQ-SFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNP 188

Query: 432 ISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARN 478
           ++   P     ++ L+ +   +N L    +    + T+L+   +  N
Sbjct: 189 MNFIQPGAFKEIR-LKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 53.4 bits (129), Expect = 7e-08
 Identities = 49/270 (18%), Positives = 87/270 (32%), Gaps = 61/270 (22%)

Query: 387 SIPLNIVGCFQLLALIVNNNNLSGEIQPE-LDALDSLKILDISNNQISGEIPLTLAGLKS 445
            IP N+    + L L  + N L   +      +   L++LD+S  +I          L  
Sbjct: 21  KIPDNLPFSTKNLDL--SFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSH 77

Query: 446 LEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFS-FQAIQMMDFSTNKF 504
           L  +  + N +      A +  ++L+        L+ +L N+     + ++ ++ + N  
Sbjct: 78  LSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLI 136

Query: 505 MGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVG 564
             F     F+                                            L +   
Sbjct: 137 QSFKLPEYFS-------------------------------------------NLTNLEH 153

Query: 565 MDLSDNLLHGTIPKGLF----QLQGLEY-LNLSFNFLDGQVPGLYRLRSLRALDLSHNSL 619
           +DLS N +  +I         Q+  L   L+LS N ++   PG ++   L+ L L  N L
Sbjct: 154 LDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQL 212

Query: 620 TGQIPGNISSLQELTLLNLSYNSFSGFVPW 649
                G    L  L  + L  N      PW
Sbjct: 213 KSVPDGIFDRLTSLQKIWLHTN------PW 236

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 52.7 bits (127), Expect = 1e-07
 Identities = 59/272 (21%), Positives = 97/272 (35%), Gaps = 69/272 (25%)

Query: 349 SLQALFLSNNLLIGEIPARI-GNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNN 407
           S + L LS N  +  + +    +   LQV+DLS   +  +I     G +           
Sbjct: 29  STKNLDLSFNP-LRHLGSYSFFSFPELQVLDLSRCEIQ-TIE---DGAY----------- 72

Query: 408 LSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKW 467
                     +L  L  L ++ N I        +GL SL+ +     NL+   N  I   
Sbjct: 73  ---------QSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHL 123

Query: 468 TNLKYFSIARNKL-SGNLPNWLFSFQAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGR 526
             LK  ++A N + S  LP +  +   ++ +D S+NK                      +
Sbjct: 124 KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI---------------------Q 162

Query: 527 SMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGTIPKGLFQLQGL 586
           S+                +  +    LS          +DLS N ++  I  G F+   L
Sbjct: 163 SIYCTDLR---------VLHQMPLLNLS----------LDLSLNPMN-FIQPGAFKEIRL 202

Query: 587 EYLNLSFNFLDGQVPGLY-RLRSLRALDLSHN 617
           + L L  N L     G++ RL SL+ + L  N
Sbjct: 203 KELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 49.6 bits (119), Expect = 1e-06
 Identities = 46/253 (18%), Positives = 78/253 (30%), Gaps = 62/253 (24%)

Query: 421 SLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKL 480
           S K LD+S N +      +      L+++D S   +    + A    ++L    +  N +
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88

Query: 481 SGNLPNWLFS-FQAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSM 539
             +L    FS   ++Q +                             S+        ++ 
Sbjct: 89  Q-SLALGAFSGLSSLQKLVAVETNL---------------------ASLENFPIGHLKT- 125

Query: 540 VIRISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGTIPKGLF-QLQGLEYLNLSFNFL-- 596
                       EL            +++ NL+        F  L  LE+L+LS N +  
Sbjct: 126 ----------LKEL------------NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163

Query: 597 --DGQVPGLYRLRSLRA-LDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVPWKQGY 653
                +  L+++  L   LDLS N +   I         L  L L  N     VP     
Sbjct: 164 IYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQLK-SVP----- 216

Query: 654 QKFPGAFAGNPNL 666
               G F    +L
Sbjct: 217 ---DGIFDRLTSL 226

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 68.6 bits (168), Expect = 2e-12
 Identities = 47/337 (13%), Positives = 97/337 (28%), Gaps = 75/337 (22%)

Query: 175 VGNFSMNLEKLDFSFNSF----CGEIPESLYYLKSLKHLDLEKNNLT-------GNVHDF 223
           +  FS  +E      ++        +   L    S+K + L  N +              
Sbjct: 1   MARFS--IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIAS 58

Query: 224 YQSLLVLNLGSNRFSGTLPCFAASAM----------SLTVLKLDNNSV----VGGIPTCI 269
            + L +                 +             L  ++L +N+        +   +
Sbjct: 59  KKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFL 118

Query: 270 ASLQALTHLNLSHNHL-------------NYEISPRLVFFEKLLLLDLSFNDLSGPLPSK 316
           +    L HL L +N L                ++ +      L  +    N L      +
Sbjct: 119 SKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKE 178

Query: 317 IAQT-TEKAGLVLLDLSHNRFSGE-IPLKITEL----KSLQALFLSNNLLIGEIPAR--- 367
            A+T      L  + +  N    E I   + E     + L+ L L +N     + +    
Sbjct: 179 WAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNT-FTHLGSSALA 237

Query: 368 --IGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKIL 425
             + +   L+ + L+  +LS        G   ++       N+             L+ L
Sbjct: 238 IALKSWPNLRELGLNDCLLSAR------GAAAVVDAFSKLENIG------------LQTL 279

Query: 426 DISNNQISGEIPLTLA-----GLKSLEIVDFSSNNLS 457
            +  N+I  +   TL       +  L  ++ + N  S
Sbjct: 280 RLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 64.7 bits (158), Expect = 3e-11
 Identities = 49/358 (13%), Positives = 102/358 (28%), Gaps = 79/358 (22%)

Query: 108 LEFLVLSSNAFTGR----ISTCFGGLSGLKTLDLSYNKF----VGVVPDAIMKLRNLREL 159
           +E   L  +A T      +         +K + LS N         + + I   ++L   
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65

Query: 160 ILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGN 219
                                   ++          + ++L     L  + L  N     
Sbjct: 66  EFSDI----------------FTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPT 109

Query: 220 -VHDFYQ------SLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASL 272
                         L  L L +N         A + ++  + +L  N      P      
Sbjct: 110 AQEPLIDFLSKHTPLEHLYLHNNGLG----PQAGAKIARALQELAVNKKAKNAPP----- 160

Query: 273 QALTHLNLSHNHLNYE----ISPRLVFFEKLLLLDLSFNDLSGP-LPSKIAQTTEK-AGL 326
             L  +    N L        +        L  + +  N +    +   + +       L
Sbjct: 161 --LRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQEL 218

Query: 327 VLLDLSHNRFSGE----IPLKITELKSLQALFLSNNLL-------IGEIPARIGNLTYLQ 375
            +LDL  N F+      + + +    +L+ L L++ LL       + +  +++ N+  LQ
Sbjct: 219 KVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIG-LQ 277

Query: 376 VIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQIS 433
            + L +N       + +     L  +I                   L  L+++ N+ S
Sbjct: 278 TLRLQYN------EIELDAVRTLKTVIDEKM-------------PDLLFLELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 59.3 bits (144), Expect = 2e-09
 Identities = 52/290 (17%), Positives = 89/290 (30%), Gaps = 61/290 (21%)

Query: 102 LCKLSFLEFLVLSSNAFTGR-----------ISTCFGGLSGLKTLDLSYNKF--VGVVP- 147
           +     LE    S   FTGR           +         L T+ LS N F      P 
Sbjct: 56  IASKKDLEIAEFSDI-FTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPL 114

Query: 148 -DAIMKLRNLRELILKGN-----------PELGGVFPGWVGNFSMNLEKLDFSFNSFCGE 195
            D + K   L  L L  N             L  +        +  L  +    N     
Sbjct: 115 IDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENG 174

Query: 196 ----IPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSL 251
                 ++    + L  + + +N +     +  + LL+  L   +              L
Sbjct: 175 SMKEWAKTFQSHRLLHTVKMVQNGIR---PEGIEHLLLEGLAYCQ-------------EL 218

Query: 252 TVLKLDNNSV----VGGIPTCIASLQALTHLNLSHNHLNYE----ISPRLVFFE--KLLL 301
            VL L +N+        +   + S   L  L L+   L+      +       E   L  
Sbjct: 219 KVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQT 278

Query: 302 LDLSFNDLSGPLPSKIAQT--TEKAGLVLLDLSHNRFS--GEIPLKITEL 347
           L L +N++       +      +   L+ L+L+ NRFS   ++  +I E+
Sbjct: 279 LRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREV 328

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 51.3 bits (123), Expect = 6e-07
 Identities = 55/278 (19%), Positives = 79/278 (28%), Gaps = 59/278 (21%)

Query: 102 LCKLSFLEFLVLSSNAFTGR----ISTCFGGLSGLKTLDLSYNKF--VGVVPDAIMKLRN 155
           L K   L  + LS NAF       +       + L+ L L  N          A      
Sbjct: 90  LLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQEL 149

Query: 156 LRELILKGNPELGGVFPGW--VGNFSM-----------NLEKLDFSFNSFCGE-----IP 197
                 K  P L  +  G   + N SM            L  +    N    E     + 
Sbjct: 150 AVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLL 209

Query: 198 ESLYYLKSLKHLDLEKNNLT-------GNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMS 250
           E L Y + LK LDL+ N  T             + +L  L L     S      A  A +
Sbjct: 210 EGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLS------ARGAAA 263

Query: 251 L-TVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLV-----FFEKLLLLDL 304
           +        N               L  L L +N +  +    L          LL L+L
Sbjct: 264 VVDAFSKLENI-------------GLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLEL 310

Query: 305 SFNDLS--GPLPSKIAQTTEKAG-LVLLDLSHNRFSGE 339
           + N  S    +  +I +     G   L +L       +
Sbjct: 311 NGNRFSEEDDVVDEIREVFSTRGRGELDELDDMEELTD 348

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 42.0 bits (99), Expect = 5e-04
 Identities = 46/331 (13%), Positives = 101/331 (30%), Gaps = 81/331 (24%)

Query: 368 IGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDI 427
           +   + ++   L  + ++            + A+++ ++++              K + +
Sbjct: 1   MARFS-IEGKSLKLDAITT------EDEKSVFAVLLEDDSV--------------KEIVL 39

Query: 428 SNNQISGE----IPLTLAGLKSLEIVDFSSNNLS----------GSLNDAITKWTNLKYF 473
           S N I  E    +   +A  K LEI +FS                 L  A+ K   L   
Sbjct: 40  SGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTV 99

Query: 474 SIARNKLSGN----LPNWLFSFQAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMP 529
            ++ N         L ++L     ++ +    N                        +  
Sbjct: 100 RLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGL-----------------GPQAGAKI 142

Query: 530 AKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGTIPKGLFQLQGLEYL 589
           A++           +   + +     N +L +    + +         K     + L  +
Sbjct: 143 ARALQELAVNKKAKNAPPLRSIICGRN-RLENGSMKEWA---------KTFQSHRLLHTV 192

Query: 590 NLSFNFLDGQ------VPGLYRLRSLRALDLSHNSLTGQ----IPGNISSLQELTLLNLS 639
            +  N +  +      + GL   + L+ LDL  N+ T      +   + S   L  L L+
Sbjct: 193 KMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLN 252

Query: 640 YNSFSGFVPWKQGYQKFPGAFAGNPNLCLES 670
               S      +G      AF+   N+ L++
Sbjct: 253 DCLLSA-----RGAAAVVDAFSKLENIGLQT 278

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 63.5 bits (155), Expect = 4e-11
 Identities = 55/186 (29%), Positives = 74/186 (39%), Gaps = 19/186 (10%)

Query: 108 LEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGN--- 164
            + L L SN  +   S  F  L+ L+ L L+ NK   +      +L+NL  L +  N   
Sbjct: 39  TKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQ 98

Query: 165 --PELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYY-LKSLKHLDLEKNNLT---G 218
             P   GVF   V     NL +L    N     +P  ++  L  L +L L  N L     
Sbjct: 99  ALPI--GVFDQLV-----NLAELRLDRNQL-KSLPPRVFDSLTKLTYLSLGYNELQSLPK 150

Query: 219 NVHDFYQSLLVLNLGSNRFSGTLPCFA-ASAMSLTVLKLDNNSVVGGIPTCIASLQALTH 277
            V D   SL  L L +N+    +P  A      L  LKLDNN +         SL+ L  
Sbjct: 151 GVFDKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKM 209

Query: 278 LNLSHN 283
           L L  N
Sbjct: 210 LQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 61.1 bits (149), Expect = 2e-10
 Identities = 54/204 (26%), Positives = 86/204 (42%), Gaps = 27/204 (13%)

Query: 260 SVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVF--FEKLLLLDLSFNDLSGPLPSKI 317
           ++   IP           L+L  N L+  +  +  F    KL LL L+ N L   LP+ I
Sbjct: 30  AIPSNIPA------DTKKLDLQSNKLS-SLPSK-AFHRLTKLRLLYLNDNKLQT-LPAGI 80

Query: 318 -AQTTEKAGLVLLDLSHNRFSGEIPLKI-TELKSLQALFLSNNLLIGEIPARI-GNLTYL 374
             +      L  L ++ N+    +P+ +  +L +L  L L  N  +  +P R+  +LT L
Sbjct: 81  FKELKN---LETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQ-LKSLPPRVFDSLTKL 135

Query: 375 QVIDLSHNMLSGSIPLNIVGCF----QLLALIVNNNNLSGEIQPELDALDSLKILDISNN 430
             + L +N L  S+P    G F     L  L + NN L    +   D L  LK L + NN
Sbjct: 136 TYLSLGYNELQ-SLP---KGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNN 191

Query: 431 QISGEIPLTLAGLKSLEIVDFSSN 454
           Q+          L+ L+++    N
Sbjct: 192 QLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 49.2 bits (118), Expect = 2e-06
 Identities = 51/232 (21%), Positives = 82/232 (35%), Gaps = 55/232 (23%)

Query: 421 SLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKL 480
             K LD+ +N++S         L  L ++  + N L         +  NL+   +  NKL
Sbjct: 38  DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKL 97

Query: 481 SGNLPNWLFSF-QAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSM 539
              LP  +F     +  +    N+    +P   F+                         
Sbjct: 98  Q-ALPIGVFDQLVNLAELRLDRNQL-KSLPPRVFD------------------------- 130

Query: 540 VIRISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGTIPKGLF-QLQGLEYLNLSFNFLDG 598
               S+T +                + L  N L  ++PKG+F +L  L+ L L  N L  
Sbjct: 131 ----SLTKLTY--------------LSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLKR 171

Query: 599 QVPGLY-RLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVPW 649
              G + +L  L+ L L +N L     G   SL++L +L L  N      PW
Sbjct: 172 VPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN------PW 217

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 41.1 bits (97), Expect = 7e-04
 Identities = 33/104 (31%), Positives = 44/104 (42%), Gaps = 12/104 (11%)

Query: 565 MDLSDNLLHGTIPKGLF-QLQGLEYLNLSFNFLDGQVPGLY-RLRSLRALDLSHNSLTGQ 622
           + L  N L  ++P  +F  L  L YL+L +N L     G++ +L SL+ L L +N L   
Sbjct: 114 LRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRV 172

Query: 623 IPGNISSLQELTLLNLSYNSFSGFVPWKQGYQKFPGAFAGNPNL 666
             G    L EL  L L  N     VP         GAF     L
Sbjct: 173 PEGAFDKLTELKTLKLDNNQLKR-VP--------EGAFDSLEKL 207

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 65.6 bits (159), Expect = 5e-11
 Identities = 85/549 (15%), Positives = 162/549 (29%), Gaps = 165/549 (30%)

Query: 22  LLLFLLLLCSNPSES----LELNLEDKASLLL--FKSLVQDPTQKLSSWVGSNCTNWTGV 75
            L     L S   E     +E  L      L+   K+  + P+     ++      +   
Sbjct: 64  TLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDN 123

Query: 76  ACNFQTGHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTL 135
              F   +V  +         ++   L +L   + +++      G       G SG KT 
Sbjct: 124 Q-VFAKYNVSRLQPYL-----KLRQALLELRPAKNVLID-----G-----VLG-SG-KT- 164

Query: 136 DLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGW--VGNFS------MNLEKLDF 187
                     V  A+    + +  +         +F  W  + N +        L+KL +
Sbjct: 165 ---------WV--ALDVCLSYK--VQCKMD--FKIF--WLNLKNCNSPETVLEMLQKLLY 207

Query: 188 SFNSFCGEIPESLYYLKSLKH-LDLEKNNLTGNVHDFYQSLLVL-NLGSNR----FSGTL 241
             +       +    +K   H +  E   L  +   +   LLVL N+ + +    F+  L
Sbjct: 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS-KPYENCLLVLLNVQNAKAWNAFN--L 264

Query: 242 PCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLL 301
            C         +L       V    T   S    TH++L H+ +            K   
Sbjct: 265 SC--------KILLTTRFKQV----TDFLSAATTTHISLDHHSMTLTPDEVKSLLLK--Y 310

Query: 302 LDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLI 361
           LD    D    LP ++  T                    P ++    S+ A  + +    
Sbjct: 311 LDCRPQD----LPREVLTT-------------------NPRRL----SIIAESIRDG--- 340

Query: 362 GEIPARIGNLTYLQ------VIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNL------- 408
               A   N  ++       +I+ S N+L    P      F  L++   + ++       
Sbjct: 341 ---LATWDNWKHVNCDKLTTIIESSLNVLE---PAEYRKMFDRLSVFPPSAHIPTILLSL 394

Query: 409 ------SGEIQPELDALDSLKILDISNNQISGEIP-------LTLAGLKSL--EIVD--- 450
                   ++   ++ L    +++    + +  IP       + L    +L   IVD   
Sbjct: 395 IWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYN 454

Query: 451 ----FSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMG 506
               F S++L     D         Y  I  +         L + +  + M      F+ 
Sbjct: 455 IPKTFDSDDLIPPYLD------QYFYSHIGHH---------LKNIEHPERMTLFRMVFL- 498

Query: 507 FIPDGNFNF 515
                +F F
Sbjct: 499 -----DFRF 502

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 61.8 bits (149), Expect = 7e-10
 Identities = 75/533 (14%), Positives = 158/533 (29%), Gaps = 153/533 (28%)

Query: 208 HLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPT 267
           H+D E    TG     Y+ +L +    + F     C     M  ++L  +    +     
Sbjct: 6   HMDFE----TGEHQYQYKDILSVFE--DAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKD 59

Query: 268 CIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIA-QTTEKAGL 326
            ++    L    LS      +      F E++L ++  F      L S I  +  + + +
Sbjct: 60  AVSGTLRLFWTLLSKQEEMVQ-----KFVEEVLRINYKF------LMSPIKTEQRQPSMM 108

Query: 327 VLLDLS-HNRFSGEIPL----------KITELKS-LQALFLSNNLLI----GEIPARIGN 370
             + +   +R   +  +             +L+  L  L  + N+LI    G      G 
Sbjct: 109 TRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLG-----SGK 163

Query: 371 --LTYLQVIDLS-HNMLSGSIP-LNIVGCFQLLALIVNNNNLSGEIQPELDAL------- 419
             +     +       +   I  LN+  C     ++     L  +I P   +        
Sbjct: 164 TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI 223

Query: 420 ---------------------DSLKILD-ISNNQI-------------SGEIPLTLAGLK 444
                                + L +L  + N +              +    +T   L 
Sbjct: 224 KLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDF-LS 282

Query: 445 SLEIVDFSSNNLSGSLNDAIT-----KWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDF 499
           +      S ++ S +L          K+ + +   + R  L+ N P      + + +   
Sbjct: 283 AATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN-P------RRLSI--- 332

Query: 500 STNKFMGFIPDGN--FNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNY 557
                   I DG   ++   + N   +             + +I  S+  ++  E    +
Sbjct: 333 ----IAESIRDGLATWDNWKHVNCDKL-------------TTIIESSLNVLEPAEYRKMF 375

Query: 558 QLFSAVGMDLSDNLLHGTIPKGLFQLQGLEYL--NLSFNFLDGQVPGLYRLRSLRALDLS 615
               +V      +     IP  L     L  +  ++  + +   V  L++  SL  ++  
Sbjct: 376 DRL-SV---FPPSAH---IPTIL-----LSLIWFDVIKSDVMVVVNKLHK-YSL--VEKQ 420

Query: 616 HNSLTGQIPG-------NISSLQEL--TLLNLSYNSFSGF------VPWKQGY 653
               T  IP         + +   L  ++++  YN    F       P+   Y
Sbjct: 421 PKESTISIPSIYLELKVKLENEYALHRSIVD-HYNIPKTFDSDDLIPPYLDQY 472

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.8 bits (123), Expect = 7e-07
 Identities = 64/454 (14%), Positives = 122/454 (26%), Gaps = 174/454 (38%)

Query: 7   LNVHSCRALKLQMLPLLLFLLLLCSN------PSESLELNLEDKASLL--LFK------S 52
           LN+ +C + +  +  L   L  +  N       S +++L +    + L  L K       
Sbjct: 187 LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC 246

Query: 53  L-----VQDPTQKLSSWVGSNCTNWT--GVACNFQTGHVV---SINLTDTSLSGQVHPRL 102
           L     VQ+               W    ++C  +   ++      +TD  LS      +
Sbjct: 247 LLVLLNVQNA------KA------WNAFNLSC--KI--LLTTRFKQVTD-FLSAATTTHI 289

Query: 103 CKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILK 162
                   L   S   T             +   L   K++        + ++L   +L 
Sbjct: 290 S-------LDHHSMTLTPD-----------EVKSL-LLKYLD------CRPQDLPREVLT 324

Query: 163 GNPELGGVFPG--------WVGNFS-MNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEK 213
            NP    +           W  N+  +N +KL          I ES     SL  L+   
Sbjct: 325 TNPRRLSIIAESIRDGLATW-DNWKHVNCDKLT--------TIIES-----SLNVLE--- 367

Query: 214 NNLTGNVHDFYQSLLVLNLGSNRFSGTLPCF------------AASAMSLTVLKLDNNSV 261
                     +  L V    ++  +  L                      ++++      
Sbjct: 368 ---PAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKES 424

Query: 262 VGGIPTCIASLQA------------LTHLNL-----------------SHNHLNY----- 287
              IP+    L+             + H N+                  ++H+ +     
Sbjct: 425 TISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNI 484

Query: 288 EISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTT----EKAGL--VLLDL---------S 332
           E   R+  F   + LD  F      L  KI   +        +   L  L         +
Sbjct: 485 EHPERMTLFRM-VFLDFRF------LEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDN 537

Query: 333 HNRFSGEIPLKITELKSLQALFLSN---NLLIGE 363
             ++       +  +      FL     NL+  +
Sbjct: 538 DPKYER----LVNAILD----FLPKIEENLICSK 563

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 61.2 bits (149), Expect = 7e-11
 Identities = 34/131 (25%), Positives = 65/131 (49%), Gaps = 9/131 (6%)

Query: 326 LVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLS 385
            V L         ++   ++ LK+ + L LS N  I +I + +  +  L+++ L  N++ 
Sbjct: 27  KVELHGMIPPIE-KMDATLSTLKACKHLALSTNN-IEKI-SSLSGMENLRILSLGRNLIK 83

Query: 386 GSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQIS--GEIPLTLAGL 443
               L+ V    L  L ++ N ++  +   ++ L +L++L +SNN+I+  GEI   LA L
Sbjct: 84  KIENLDAV-ADTLEELWISYNQIA-SLSG-IEKLVNLRVLYMSNNKITNWGEI-DKLAAL 139

Query: 444 KSLEIVDFSSN 454
             LE +  + N
Sbjct: 140 DKLEDLLLAGN 150

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 2/66 (3%)

Query: 576 IPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQELTL 635
           +   L  L+  ++L LS N ++ ++  L  + +LR L L  N +  +I    +    L  
Sbjct: 40  MDATLSTLKACKHLALSTNNIE-KISSLSGMENLRILSLGRNLIK-KIENLDAVADTLEE 97

Query: 636 LNLSYN 641
           L +SYN
Sbjct: 98  LWISYN 103

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 34/129 (26%), Positives = 58/129 (44%), Gaps = 12/129 (9%)

Query: 184 KLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLT--GNVHDFYQSLLVLNLGSNRFSGTL 241
           +L         ++  +L  LK+ KHL L  NN+    ++    ++L +L+LG N     +
Sbjct: 29  ELHGMIPPI-EKMDATLSTLKACKHLALSTNNIEKISSLSGM-ENLRILSLGRNLIK-KI 85

Query: 242 PCFAASAMSLTVLKLDNN--SVVGGIPTCIASLQALTHLNLSHNHL-NYEISPRLVFFEK 298
               A A +L  L +  N  + + G    I  L  L  L +S+N + N+    +L   +K
Sbjct: 86  ENLDAVADTLEELWISYNQIASLSG----IEKLVNLRVLYMSNNKITNWGEIDKLAALDK 141

Query: 299 LLLLDLSFN 307
           L  L L+ N
Sbjct: 142 LEDLLLAGN 150

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 41.2 bits (97), Expect = 4e-04
 Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 5/78 (6%)

Query: 566 DLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLT--GQI 623
            L  NL+   I         LE L +S+N +   + G+ +L +LR L +S+N +T  G+I
Sbjct: 76  SLGRNLIK-KIENLDAVADTLEELWISYNQIA-SLSGIEKLVNLRVLYMSNNKITNWGEI 133

Query: 624 PGNISSLQELTLLNLSYN 641
              +++L +L  L L+ N
Sbjct: 134 -DKLAALDKLEDLLLAGN 150

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 40.4 bits (95), Expect = 6e-04
 Identities = 27/122 (22%), Positives = 45/122 (36%), Gaps = 17/122 (13%)

Query: 121 RISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGN--PELGGVFPGWVGNF 178
           ++      L   K L LS N    +   ++  + NLR L L  N   ++  +        
Sbjct: 39  KMDATLSTLKACKHLALSTNNIEKI--SSLSGMENLRILSLGRNLIKKIENLD-----AV 91

Query: 179 SMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDF-----YQSLLVLNLG 233
           +  LE+L  S+N         +  L +L+ L +  N +T N  +         L  L L 
Sbjct: 92  ADTLEELWISYNQI--ASLSGIEKLVNLRVLYMSNNKIT-NWGEIDKLAALDKLEDLLLA 148

Query: 234 SN 235
            N
Sbjct: 149 GN 150

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 61.6 bits (150), Expect = 1e-10
 Identities = 45/313 (14%), Positives = 85/313 (27%), Gaps = 85/313 (27%)

Query: 99  HPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRE 158
               C+    E   ++      RI          +TL L       +   A   L N+  
Sbjct: 4   SSPPCECHQEEDFRVTCKDIQ-RIP---SLPPSTQTLKLIETHLRTIPSHAFSNLPNISR 59

Query: 159 LILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTG 218
           + +  +  L  +                    SF          L  + H+++       
Sbjct: 60  IYVSIDVTLQQLESH-----------------SFYN--------LSKVTHIEIRNTR--- 91

Query: 219 NVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIP--TCIASLQALT 276
                     +  +  +     LP        L  L + N  +    P  T + S     
Sbjct: 92  ---------NLTYIDPDALKE-LP-------LLKFLGIFNTGLK-MFPDLTKVYSTDIFF 133

Query: 277 HLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRF 336
            L ++ N     I               +F  L                 + L L +N F
Sbjct: 134 ILEITDNPYMTSIPVN------------AFQGLC-------------NETLTLKLYNNGF 168

Query: 337 SGEIPLKITELKSLQALFLSNNLLIGEIPARI--GNLTYLQVIDLSHNMLSGSIPLNIVG 394
           +  +         L A++L+ N  +  I      G  +   ++D+S   ++ ++P     
Sbjct: 169 T-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALP---SK 223

Query: 395 CFQ-LLALIVNNN 406
             + L  LI  N 
Sbjct: 224 GLEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 56.6 bits (137), Expect = 5e-09
 Identities = 38/249 (15%), Positives = 79/249 (31%), Gaps = 59/249 (23%)

Query: 401 LIVNNNNLSGEIQPE-LDALDSLKILDIS-NNQISGEIPLTLAGLKSLEIVDFSSNNLSG 458
           L +   +L   I       L ++  + +S +  +      +   L  +  ++  +     
Sbjct: 36  LKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT 94

Query: 459 SL-NDAITKWTNLKYFSIARNKLSGNLPN--WLFSFQAIQMMDFSTNKFMGFIPDGNFNF 515
            +  DA+ +   LK+  I    L    P+   ++S     +++ + N +M  IP   F  
Sbjct: 95  YIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPVNAF-- 151

Query: 516 SLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGT 575
                     + +  ++  L                               L +N    +
Sbjct: 152 ----------QGLCNETLTL------------------------------KLYNNGFT-S 170

Query: 576 IPKGLFQLQGLEYLNLSFNFLDGQVP-----GLYRLRSLRALDLSHNSLTGQIPGNI-SS 629
           +    F    L+ + L+ N     +      G+Y       LD+S  S+T  +P      
Sbjct: 171 VQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSG--PSLLDVSQTSVT-ALPSKGLEH 227

Query: 630 LQELTLLNL 638
           L+EL   N 
Sbjct: 228 LKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 56.6 bits (137), Expect = 6e-09
 Identities = 31/199 (15%), Positives = 68/199 (34%), Gaps = 13/199 (6%)

Query: 324 AGLVLLDLSHNRFSGEIPLKI-TELKSLQALFLSNNLLIGEIPARI-GNLTYLQVIDLSH 381
                L L        IP    + L ++  +++S ++ + ++ +    NL+ +  I++ +
Sbjct: 31  PSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRN 89

Query: 382 NMLSGSIPLNI-VGCFQLLALIVNNNNLSGEIQPE--LDALDSLKILDIS-NNQISGEIP 437
                 I  +       L  L + N  L         + + D   IL+I+ N  ++    
Sbjct: 90  TRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPV 148

Query: 438 LTLAGLKS-LEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFS--FQAI 494
               GL +    +   +N  + S+       T L    + +NK    +    F   +   
Sbjct: 149 NAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGP 207

Query: 495 QMMDFSTNKFMGFIPDGNF 513
            ++D S       +P    
Sbjct: 208 SLLDVSQTSVT-ALPSKGL 225

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 18/108 (16%), Positives = 37/108 (34%), Gaps = 18/108 (16%)

Query: 566 DLSDNLLHGTIPKGLFQ-LQGLEYLNLSFN----FLDGQVPGLYRLRSLRALDLSHNSLT 620
            +S ++    +    F  L  + ++ +       ++D     L  L  L+ L + +  L 
Sbjct: 61  YVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDA--LKELPLLKFLGIFNTGLK 118

Query: 621 GQIPGN--ISSLQELTLLNLSYNSFSGFVPWKQGYQKFPGAFAGNPNL 666
              P    + S     +L ++ N +   +P          AF G  N 
Sbjct: 119 -MFPDLTKVYSTDIFFILEITDNPYMTSIP--------VNAFQGLCNE 157

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 57.8 bits (140), Expect = 5e-09
 Identities = 61/353 (17%), Positives = 120/353 (33%), Gaps = 70/353 (19%)

Query: 130 SGLKTLDLSYNKF----VGVVPDAIMKLR-NLRELILKGN---PELGGVFPGWVGNFSMN 181
            G+ +LDLS N         +  A      ++  L L GN    +        +     N
Sbjct: 22  HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81

Query: 182 LEKLDFSFNSF----CGEIPESLYYLK-SLKHLDLEKNNLTGN--------VHDFYQSLL 228
           +  L+ S N        E+ ++L  +  ++  LDL  N+ +            +   S+ 
Sbjct: 82  VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASIT 141

Query: 229 VLNLGSNRFSGTLPCFAASAMSL-TVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNY 287
            LNL  N           S+  L  +L     +              +  LNL  N+L  
Sbjct: 142 SLNLRGNDLG------IKSSDELIQILAAIPAN--------------VNSLNLRGNNLAS 181

Query: 288 E----ISPRLVFF-EKLLLLDLSFNDLSGPLPSKIAQ--TTEKAGLVLLDLSHNRFSGE- 339
           +    ++  L      +  LDLS N L     +++A   ++    +V L+L  N   G  
Sbjct: 182 KNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS 241

Query: 340 ---IPLKITELKSLQALFLSNNLL--IGEIPAR-----IGNLTYLQVIDLSHNMLSGSIP 389
              + L    LK LQ ++L  +++  + +   +       N+  + ++D +   +  S  
Sbjct: 242 LENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHS 301

Query: 390 LNIVGCFQLLALIVNNNNLSGEIQPELDAL----------DSLKILDISNNQI 432
           + I    + L+   +  +L  +                  D L+    +   +
Sbjct: 302 IPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCKPL 354

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 54.7 bits (132), Expect = 5e-08
 Identities = 54/301 (17%), Positives = 99/301 (32%), Gaps = 50/301 (16%)

Query: 193 CGEIPESLYYLKSLKHLDLEKNNLTGN--------VHDFYQSLLVLNLGSNRFSGT---- 240
              + E       +  LDL  NNL             +   S+  LNL  N         
Sbjct: 11  SNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDE 70

Query: 241 -LPCFAASAMSLTVLKLDNNSV-VGGIPTCIASLQA----LTHLNLSHNHLNYE----IS 290
            +   AA   ++T L L  N +        + +L A    +T L+L  N  + +      
Sbjct: 71  LVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFK 130

Query: 291 PRLVFFEK-LLLLDLSFNDLSGPLPSKIAQ--TTEKAGLVLLDLSHNRFSGEIPLKITEL 347
                    +  L+L  NDL      ++ Q      A +  L+L  N  + +   ++ + 
Sbjct: 131 QAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKF 190

Query: 348 -----KSLQALFLSNNLLIGEIPARI------GNLTYLQVIDLSHNMLSGSIPLNIVGCF 396
                 S+ +L LS NL +G                ++  ++L  N L G          
Sbjct: 191 LASIPASVTSLDLSANL-LGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGP------SLE 243

Query: 397 QLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNL 456
            L  L  +  +L       +  LD   + ++S  Q    +      ++ + +VD +   +
Sbjct: 244 NLKLLKDSLKHLQ-----TVY-LDYDIVKNMSKEQCK-ALGAAFPNIQKIILVDKNGKEI 296

Query: 457 S 457
            
Sbjct: 297 H 297

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 52.8 bits (127), Expect = 2e-07
 Identities = 51/336 (15%), Positives = 109/336 (32%), Gaps = 62/336 (18%)

Query: 83  HVVSINLTDTSLSGQVHPRLCKL-----SFLEFLVLSSNAFTGRISTCFGGL-----SGL 132
            V S++L+  +L       L +      + +  L LS N+   + S     +     + +
Sbjct: 23  GVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82

Query: 133 KTLDLSYNKF----VGVVPDAIMKL-RNLRELILKGNP-------ELGGVFPGWVGNFSM 180
            +L+LS N         +   +  +   +  L L  N        E    F     N   
Sbjct: 83  TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAF----SNLPA 138

Query: 181 NLEKLDFSFNSF----CGEIPESLYYL-KSLKHLDLEKNNLTGN--------VHDFYQSL 227
           ++  L+   N        E+ + L  +  ++  L+L  NNL           +     S+
Sbjct: 139 SITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASV 198

Query: 228 LVLNLGSNRFSGT-----LPCFAASAMSLTVLKLDNNSV----VGGIPTCIASLQALTHL 278
             L+L +N             F++    +  L L  N +    +  +     SL+ L  +
Sbjct: 199 TSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTV 258

Query: 279 NLSHNHLNY-------EISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVL--L 329
            L ++ +          +       +K++L+D +  ++       I+    +        
Sbjct: 259 YLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKADVP 318

Query: 330 DLSHN--RFSGEIPLKITELK---SLQALFLSNNLL 360
            L +    F+ +    I +L     L+    +   L
Sbjct: 319 SLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCKPL 354

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 46/250 (18%), Positives = 87/250 (34%), Gaps = 40/250 (16%)

Query: 269 IASLQALTHLNLSHNHLNYEISPRLVF-----FEKLLLLDLSFNDLSGPLPSKIAQ--TT 321
            +    +T L+LS N+L    +  L+         +  L+LS N L      ++ Q    
Sbjct: 18  TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAA 77

Query: 322 EKAGLVLLDLSHNRFSGEIPLKITEL-----KSLQALFLSNNLL-------IGEIPARIG 369
             A +  L+LS N  S +   ++ +       ++  L L  N           +  A   
Sbjct: 78  IPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQ--AFSN 135

Query: 370 NLTYLQVIDLSHNMLSGSIPLNIVGCFQ-----LLALIVNNNNLSGEIQPEL-DALD--- 420
               +  ++L  N L       ++         + +L +  NNL+ +   EL   L    
Sbjct: 136 LPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIP 195

Query: 421 -SLKILDISNNQISGEIPLTLA-GLKS----LEIVDFSSNNLSGS----LNDAITKWTNL 470
            S+  LD+S N +  +    LA    S    +  ++   N L G     L        +L
Sbjct: 196 ASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHL 255

Query: 471 KYFSIARNKL 480
           +   +  + +
Sbjct: 256 QTVYLDYDIV 265

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 53.9 bits (130), Expect = 3e-08
 Identities = 35/145 (24%), Positives = 65/145 (44%), Gaps = 12/145 (8%)

Query: 314 PSKIAQTTEKAGLVLLDLSHNRFSGEIPLKI-TELKSLQALFLSNNLLIGEIPARI-GNL 371
           P  I Q T +     L L++N F+      I  +L  L+ +  SNN  I +I        
Sbjct: 27  PEHIPQYTAE-----LRLNNNEFTVLEATGIFKKLPQLRKINFSNNK-ITDIEEGAFEGA 80

Query: 372 TYLQVIDLSHNMLSGSIPLNI-VGCFQLLALIVNNNNLSGEIQPEL-DALDSLKILDISN 429
           + +  I L+ N L  ++   +  G   L  L++ +N ++  +  +    L S+++L + +
Sbjct: 81  SGVNEILLTSNRLE-NVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYD 138

Query: 430 NQISGEIPLTLAGLKSLEIVDFSSN 454
           NQI+   P     L SL  ++  +N
Sbjct: 139 NQITTVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 50.0 bits (120), Expect = 6e-07
 Identities = 35/134 (26%), Positives = 54/134 (40%), Gaps = 16/134 (11%)

Query: 111 LVLSSNAFTGRIST-CFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPEL-- 167
           L L++N FT   +T  F  L  L+ ++ S NK   +   A      + E++L  N  L  
Sbjct: 37  LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN-RLEN 95

Query: 168 --GGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYY-LKSLKHLDLEKNNLTGNVH--- 221
               +F G       +L+ L    N     +    +  L S++ L L  N +T       
Sbjct: 96  VQHKMFKGLE-----SLKTLMLRSNRI-TCVGNDSFIGLSSVRLLSLYDNQITTVAPGAF 149

Query: 222 DFYQSLLVLNLGSN 235
           D   SL  LNL +N
Sbjct: 150 DTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 18/78 (23%), Positives = 28/78 (35%), Gaps = 2/78 (2%)

Query: 566 DLSDNLLHGTIPKGLFQ-LQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQI 623
            L++N        G+F+ L  L  +N S N +     G       +  + L+ N L    
Sbjct: 38  RLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQ 97

Query: 624 PGNISSLQELTLLNLSYN 641
                 L+ L  L L  N
Sbjct: 98  HKMFKGLESLKTLMLRSN 115

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 47.3 bits (113), Expect = 4e-06
 Identities = 27/103 (26%), Positives = 43/103 (41%), Gaps = 12/103 (11%)

Query: 566 DLSDNLLHGTIPKGLF-QLQGLEYLNLSFNFLDGQVPGL-YRLRSLRALDLSHNSLTGQI 623
           + S+N +   I +G F    G+  + L+ N L+     +   L SL+ L L  N +T   
Sbjct: 63  NFSNNKIT-DIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVG 121

Query: 624 PGNISSLQELTLLNLSYNSFSGFVPWKQGYQKFPGAFAGNPNL 666
             +   L  + LL+L  N  +  V         PGAF    +L
Sbjct: 122 NDSFIGLSSVRLLSLYDNQIT-TVA--------PGAFDTLHSL 155

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 30/111 (27%), Positives = 45/111 (40%), Gaps = 26/111 (23%)

Query: 104 KLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKG 163
             S +  ++L+SN         F GL  LKTL L  N+   V  D+ + L ++R L L  
Sbjct: 79  GASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYD 138

Query: 164 NPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKN 214
           N ++  V PG              +F++           L SL  L+L  N
Sbjct: 139 N-QITTVAPG--------------AFDT-----------LHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 3/80 (3%)

Query: 566 DLSDNLLHGTIPKGLFQ-LQGLEYLNLSFNFLDGQVPGLY-RLRSLRALDLSHNSLTGQI 623
            L+ N L   +   +F+ L+ L+ L L  N +       +  L S+R L L  N +T   
Sbjct: 87  LLTSNRLE-NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVA 145

Query: 624 PGNISSLQELTLLNLSYNSF 643
           PG   +L  L+ LNL  N F
Sbjct: 146 PGAFDTLHSLSTLNLLANPF 165

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 55.1 bits (132), Expect = 4e-08
 Identities = 19/101 (18%), Positives = 36/101 (35%), Gaps = 2/101 (1%)

Query: 381 HNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPE-LDALDSLKILDISNNQISGEIPLT 439
               +     ++ G   L  L + N      ++   L  L  L+ L I  + +    P  
Sbjct: 16  TRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDA 75

Query: 440 LAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKL 480
                 L  ++ S N L  SL+    +  +L+   ++ N L
Sbjct: 76  FHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 54.0 bits (129), Expect = 8e-08
 Identities = 19/94 (20%), Positives = 30/94 (31%), Gaps = 3/94 (3%)

Query: 146 VPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKS 205
               +    NL EL ++    L  +    +      L  L    +      P++ ++   
Sbjct: 23  SLHHLPGAENLTELYIENQQHLQHLELRDLRGLG-ELRNLTIVKSGLRFVAPDAFHFTPR 81

Query: 206 LKHLDLEKNNLTGNVHDFYQ--SLLVLNLGSNRF 237
           L  L+L  N L        Q  SL  L L  N  
Sbjct: 82  LSRLNLSFNALESLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 52.0 bits (124), Expect = 4e-07
 Identities = 16/100 (16%), Positives = 39/100 (39%), Gaps = 4/100 (4%)

Query: 333 HNRFSGEIPLKITELKSLQALFLSNNLLIGEIPAR-IGNLTYLQVIDLSHNMLSGSIPLN 391
               + +    +   ++L  L++ N   +  +  R +  L  L+ + +  + L   +  +
Sbjct: 16  TRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPD 74

Query: 392 I-VGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNN 430
                 +L  L ++ N L   +  +     SL+ L +S N
Sbjct: 75  AFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGN 113

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 47.8 bits (113), Expect = 8e-06
 Identities = 24/125 (19%), Positives = 37/125 (29%), Gaps = 17/125 (13%)

Query: 69  CTNWTGVACNFQTGHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRI-STCFG 127
               +G+ C             D          L     L  L + +      +      
Sbjct: 7   PHGSSGLRCTRD-------GALD------SLHHLPGAENLTELYIENQQHLQHLELRDLR 53

Query: 128 GLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDF 187
           GL  L+ L +  +    V PDA      L  L L  N  L  +    V    ++L++L  
Sbjct: 54  GLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA-LESLSWKTV--QGLSLQELVL 110

Query: 188 SFNSF 192
           S N  
Sbjct: 111 SGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 45.5 bits (107), Expect = 4e-05
 Identities = 21/111 (18%), Positives = 32/111 (28%), Gaps = 13/111 (11%)

Query: 570 NLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG--LYRLRSLRALDLSHNSLTGQIPGNI 627
                     L   + L  L +        +    L  L  LR L +  + L    P   
Sbjct: 17  RDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAF 76

Query: 628 SSLQELTLLNLSYNSFSGFVPWKQGYQKFPGAFAGNP--NLCLESSHGECN 676
                L+ LNLS+N+    + W            G     L L  +   C+
Sbjct: 77  HFTPRLSRLNLSFNALE-SLSW--------KTVQGLSLQELVLSGNPLHCS 118

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 44.3 bits (104), Expect = 1e-04
 Identities = 18/97 (18%), Positives = 32/97 (32%), Gaps = 7/97 (7%)

Query: 195 EIPESLYYLKSLKHLDLEKNNLTGNVHDF----YQSLLVLNLGSNRFSGTLPCFAASAM- 249
           +    L   ++L  L +E      ++          L  L +  +     +   A     
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTP 80

Query: 250 SLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLN 286
            L+ L L  N++       +  L  L  L LS N L+
Sbjct: 81  RLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 44.0 bits (103), Expect = 1e-04
 Identities = 22/111 (19%), Positives = 36/111 (32%), Gaps = 3/111 (2%)

Query: 395 CFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPL-TLAGLKSLEIVDFSS 453
                 L    +    +    L   ++L  L I N Q    + L  L GL  L  +    
Sbjct: 7   PHGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVK 65

Query: 454 NNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKF 504
           + L     DA      L   +++ N L  +L        ++Q +  S N  
Sbjct: 66  SGLRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 42.8 bits (100), Expect = 3e-04
 Identities = 17/80 (21%), Positives = 27/80 (33%), Gaps = 3/80 (3%)

Query: 566 DLSDNLLHGTIPKGLFQ-LQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQI 623
            + +      +     + L  L  L +  + L    P   +    L  L+LS N+L    
Sbjct: 37  YIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLS 96

Query: 624 PGNISSLQELTLLNLSYNSF 643
              +  L  L  L LS N  
Sbjct: 97  WKTVQGLS-LQELVLSGNPL 115

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 52.3 bits (126), Expect = 9e-08
 Identities = 32/134 (23%), Positives = 52/134 (38%), Gaps = 17/134 (12%)

Query: 111 LVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGN-----P 165
           + L  N         F     L+ +DLS N+   + PDA   LR+L  L+L GN     P
Sbjct: 37  IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELP 96

Query: 166 ELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLY-YLKSLKHLDLEKNNLTGNVH--- 221
           +   +F G       +L+ L  + N     +    +  L +L  L L  N L        
Sbjct: 97  K--SLFEGLF-----SLQLLLLNANKI-NCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTF 148

Query: 222 DFYQSLLVLNLGSN 235
              +++  ++L  N
Sbjct: 149 SPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 50.4 bits (121), Expect = 5e-07
 Identities = 32/136 (23%), Positives = 63/136 (46%), Gaps = 9/136 (6%)

Query: 250 SLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVF--FEKLLLLDLSFN 307
           ++T ++L+ N++    P   +  + L  ++LS+N ++ E++P   F     L  L L  N
Sbjct: 33  TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPD-AFQGLRSLNSLVLYGN 90

Query: 308 DLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKI-TELKSLQALFLSNNLLIGEIPA 366
            ++  LP  + +      L LL L+ N+ +  + +    +L +L  L L +N L      
Sbjct: 91  KITE-LPKSLFEGLFS--LQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKG 146

Query: 367 RIGNLTYLQVIDLSHN 382
               L  +Q + L+ N
Sbjct: 147 TFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 49.3 bits (118), Expect = 1e-06
 Identities = 25/103 (24%), Positives = 37/103 (35%), Gaps = 12/103 (11%)

Query: 566 DLSDNLLHGTIPKGLF-QLQGLEYLNLSFNFLDGQVPGL-YRLRSLRALDLSHNSLTGQI 623
           DLS+N +   +    F  L+ L  L L  N +      L   L SL+ L L+ N +    
Sbjct: 62  DLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLR 120

Query: 624 PGNISSLQELTLLNLSYNSFSGFVPWKQGYQKFPGAFAGNPNL 666
                 L  L LL+L  N     +          G F+    +
Sbjct: 121 VDAFQDLHNLNLLSLYDNKLQ-TIA--------KGTFSPLRAI 154

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 25/78 (32%), Positives = 33/78 (42%), Gaps = 3/78 (3%)

Query: 566 DLSDNLLHGTIPKGLFQ-LQGLEYLNLSFNFLDGQVPGL-YRLRSLRALDLSHNSLTGQI 623
            L  N +   IP G F   + L  ++LS N +    P     LRSL +L L  N +T   
Sbjct: 38  RLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELP 96

Query: 624 PGNISSLQELTLLNLSYN 641
                 L  L LL L+ N
Sbjct: 97  KSLFEGLFSLQLLLLNAN 114

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 47.7 bits (114), Expect = 3e-06
 Identities = 31/137 (22%), Positives = 51/137 (37%), Gaps = 19/137 (13%)

Query: 133 KTLDLSYNKFVGVVPDAIMKLRNLRELILKGN-----PELGGVFPGWVGNFSMNLEKLDF 187
             + L  N    + P A    + LR + L  N           F G       +L  L  
Sbjct: 35  TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAP--DAFQGLR-----SLNSLVL 87

Query: 188 SFNSFCGEIPESLYY-LKSLKHLDLEKNNLTG---NVHDFYQSLLVLNLGSNRFSGTLPC 243
             N    E+P+SL+  L SL+ L L  N +     +      +L +L+L  N+   T+  
Sbjct: 88  YGNKI-TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQ-TIAK 145

Query: 244 FAASAM-SLTVLKLDNN 259
              S + ++  + L  N
Sbjct: 146 GTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 46.6 bits (111), Expect = 7e-06
 Identities = 38/156 (24%), Positives = 59/156 (37%), Gaps = 28/156 (17%)

Query: 349 SLQALFLSNNLLIGEIPARI-GNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNN 407
           ++  + L  N  I  IP         L+ IDLS+N +S  +       F           
Sbjct: 33  TITEIRLEQNT-IKVIPPGAFSPYKKLRRIDLSNNQIS-ELA---PDAF----------- 76

Query: 408 LSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKW 467
                      L SL  L +  N+I+        GL SL+++  ++N ++    DA    
Sbjct: 77  ---------QGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDL 127

Query: 468 TNLKYFSIARNKLSGNLPNWLF-SFQAIQMMDFSTN 502
            NL   S+  NKL   +    F   +AIQ M  + N
Sbjct: 128 HNLNLLSLYDNKLQ-TIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 9/86 (10%)

Query: 566 DLSDNLLHGTIPKGLFQ-LQGLEYLNLSFNFLDGQVPGLY-RLRSLRALDLSHNSLTGQI 623
            L  N +   +PK LF+ L  L+ L L+ N ++      +  L +L  L L  N L    
Sbjct: 86  VLYGNKIT-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIA 144

Query: 624 PGNISSLQELTLLNLSYNSFSGFVPW 649
            G  S L+ +  ++L+ N      P+
Sbjct: 145 KGTFSPLRAIQTMHLAQN------PF 164

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 54.2 bits (130), Expect = 1e-07
 Identities = 67/408 (16%), Positives = 126/408 (30%), Gaps = 60/408 (14%)

Query: 88  NLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKF--VGV 145
           NL    L G+    +  L    +    +      ++     L  LK++         + +
Sbjct: 74  NLRSLKLKGKPRAAMFNLIPENWGGYVTPW----VTEISNNLRQLKSVHFRRMIVSDLDL 129

Query: 146 VPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYL-- 203
              A  +  +L  L L             +      ++ L    +SF  +  + L+ L  
Sbjct: 130 DRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189

Query: 204 --KSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSV 261
              SL+ L+         +                    L   A +  SL  +K+ +  +
Sbjct: 190 HNTSLEVLNFYMTEFA-KISP----------------KDLETIARNCRSLVSVKVGDFEI 232

Query: 262 V--GGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSF-NDLSGPLPSKIA 318
           +   G     A+L+     +L+ +    E    LVF  KL  L LS+      P+    A
Sbjct: 233 LELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFA 292

Query: 319 QTTEKAGLVLLDLSHNRFSGEIPLK-ITELKSLQALFLSNNLLIGEIPARIGNLTYLQVI 377
                  +  LDL +     E     I +  +L+ L   N +    +         L+ +
Sbjct: 293 A-----QIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRL 347

Query: 378 DLSHNMLSGSIPLNIV------------GCFQLLALIVNNNNLSGE----IQPELDALDS 421
            +        +                 GC +L  + V  ++++ E    I   L  L  
Sbjct: 348 RIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCD 407

Query: 422 LKILDISNNQISGEIPLT------LAGLKSLEIVDFSSNNLSGSLNDA 463
            +++ +   +   ++PL       L G K L    F      G L D 
Sbjct: 408 FRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLR--QGGLTDL 453

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 53.4 bits (127), Expect = 1e-07
 Identities = 28/211 (13%), Positives = 64/211 (30%), Gaps = 37/211 (17%)

Query: 218 GNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIAS--LQAL 275
            ++     ++ +LN    + +  L        +L  L++ +  +   +   I    L  L
Sbjct: 162 VDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNL 221

Query: 276 THLNLSHNHLNY-------EISPRLVF--FEKLLLLDLSFNDLSGPLPSKIAQTTEKAGL 326
             L L     +Y          P      F  L  L +   +    +     ++     L
Sbjct: 222 EKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQL 281

Query: 327 VLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSG 386
             +D+S    + E           + L              +  + +L+ I++ +N LS 
Sbjct: 282 ETMDISAGVLTDE---------GARLLL-----------DHVDKIKHLKFINMKYNYLSD 321

Query: 387 SIPLNIVGCFQLLALIVNNNNLSGEIQPELD 417
                     +L   +    ++S   + + D
Sbjct: 322 E------MKKELQKSLPMKIDVSDSQEYDDD 346

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 42.2 bits (98), Expect = 4e-04
 Identities = 31/153 (20%), Positives = 55/153 (35%), Gaps = 21/153 (13%)

Query: 347 LKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCF----QLLALI 402
           +  L  L +     +        NL  L   ++    L  S+  +I+G      + L L 
Sbjct: 171 MPLLNNLKIKGTNNLSIGKKPRPNLKSL---EIISGGLPDSVVEDILGSDLPNLEKLVLY 227

Query: 403 VNNNNLSGEIQPEL-------DALDSLKILDISNNQISGEIPLTLAG---LKSLEIVDFS 452
           V   +   +    +       D   +LK L I + +    +         L  LE +D S
Sbjct: 228 VGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDIS 287

Query: 453 SNNLSGS----LNDAITKWTNLKYFSIARNKLS 481
           +  L+      L D + K  +LK+ ++  N LS
Sbjct: 288 AGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 41.9 bits (97), Expect = 6e-04
 Identities = 27/144 (18%), Positives = 53/144 (36%), Gaps = 22/144 (15%)

Query: 90  TDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGG--LSGLKTLDLSYNK----FV 143
            + S+  +  P L      + L + S      +     G  L  L+ L L        F 
Sbjct: 183 NNLSIGKKPRPNL------KSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFD 236

Query: 144 GVVPD-----AIMKLRNLRELILKGNPELGGVFPGWVGNFSM-NLEKLDFSFNSFCGE-- 195
           G +       +  +  NL+ L +    E   V   ++ +  +  LE +D S      E  
Sbjct: 237 GDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGA 296

Query: 196 --IPESLYYLKSLKHLDLEKNNLT 217
             + + +  +K LK ++++ N L+
Sbjct: 297 RLLLDHVDKIKHLKFINMKYNYLS 320

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 41.5 bits (96), Expect = 7e-04
 Identities = 29/182 (15%), Positives = 54/182 (29%), Gaps = 33/182 (18%)

Query: 272 LQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDL 331
           L A+  LN         +S        L  L++    L   +   I  +     L  L L
Sbjct: 168 LDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPN-LEKLVL 226

Query: 332 S--HNRFSGEIP-------LKITELKSLQALFLSNNLLIGEIPARIGN---LTYLQVIDL 379
                 +  +                +L+ L + +      +         L  L+ +D+
Sbjct: 227 YVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDI 286

Query: 380 SHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLT 439
           S  +L+        G   LL                +D +  LK +++  N +S E+   
Sbjct: 287 SAGVLTDE------GARLLLD--------------HVDKIKHLKFINMKYNYLSDEMKKE 326

Query: 440 LA 441
           L 
Sbjct: 327 LQ 328

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 50.5 bits (121), Expect = 6e-07
 Identities = 41/160 (25%), Positives = 54/160 (33%), Gaps = 17/160 (10%)

Query: 109 EFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGN---- 164
           E L L S          F GL+ L  L+L YN+   +       L  L  L L  N    
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS 97

Query: 165 -PELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLY-YLKSLKHLDLEKNNLT---GN 219
            P   GVF          L+KL    N     +P  ++  L  LK L L  N L      
Sbjct: 98  LPL--GVFDHLT-----QLDKLYLGGNQL-KSLPSGVFDRLTKLKELRLNTNQLQSIPAG 149

Query: 220 VHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNN 259
             D   +L  L+L +N+              L  + L  N
Sbjct: 150 AFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 46/160 (28%), Positives = 63/160 (39%), Gaps = 12/160 (7%)

Query: 252 TVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFE--KLLLLDLSFNDL 309
             L L +  +          L  LT LNL +N L  +     VF +  +L  L L+ N L
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQL--QTLSAGVFDDLTELGTLGLANNQL 95

Query: 310 SGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKI-TELKSLQALFLSNNLLIGEIPARI 368
           +  LP  +     +  L  L L  N+    +P  +   L  L+ L L+ N L   IPA  
Sbjct: 96  AS-LPLGVFDHLTQ--LDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQL-QSIPAGA 150

Query: 369 -GNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNN 407
              LT LQ + LS N L  S+P         L  I    N
Sbjct: 151 FDKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 44.7 bits (106), Expect = 4e-05
 Identities = 43/161 (26%), Positives = 66/161 (40%), Gaps = 19/161 (11%)

Query: 302 LDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKI-TELKSLQALFLSNNLL 360
           LDL    L+    +     T+   L  L+L +N+    +   +  +L  L  L L+NN L
Sbjct: 40  LDLQSTGLATLSDATFRGLTK---LTWLNLDYNQLQT-LSAGVFDDLTELGTLGLANNQL 95

Query: 361 IGEIPARI-GNLTYLQVIDLSHNMLSGSIPLNIVGCF----QLLALIVNNNNLSGEIQPE 415
              +P  +  +LT L  + L  N L  S+P    G F    +L  L +N N L     P 
Sbjct: 96  -ASLPLGVFDHLTQLDKLYLGGNQLK-SLP---SGVFDRLTKLKELRLNTNQLQS--IPA 148

Query: 416 --LDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSN 454
              D L +L+ L +S NQ+          L  L+ +    N
Sbjct: 149 GAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 41.6 bits (98), Expect = 4e-04
 Identities = 47/157 (29%), Positives = 60/157 (38%), Gaps = 11/157 (7%)

Query: 230 LNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEI 289
           L+L S   +            LT L LD N +          L  L  L L++N L    
Sbjct: 40  LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL--AS 97

Query: 290 SPRLVF--FEKLLLLDLSFNDLSGPLPSKI-AQTTEKAGLVLLDLSHNRFSGEIPLKI-T 345
            P  VF    +L  L L  N L   LPS +  + T+   L  L L+ N+    IP     
Sbjct: 98  LPLGVFDHLTQLDKLYLGGNQLKS-LPSGVFDRLTK---LKELRLNTNQLQ-SIPAGAFD 152

Query: 346 ELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHN 382
           +L +LQ L LS N L          L  LQ I L  N
Sbjct: 153 KLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 51.1 bits (122), Expect = 1e-06
 Identities = 62/474 (13%), Positives = 140/474 (29%), Gaps = 50/474 (10%)

Query: 24  LFLLLLCSNPSESLELNLEDKASLLLFKSLVQDPTQKLSSWVGSNCTNWTGVACNFQTGH 83
           +    +     +   + L+ K     F  +       +  W+ +  +++T +    +   
Sbjct: 56  VSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWL----EEIR 111

Query: 84  VVSINLTDTSLS--GQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNK 141
           +  + +TD  L    +       L        S++      +TC      LK LDL  + 
Sbjct: 112 LKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATC----RNLKELDLRESD 167

Query: 142 FVGVVPDAIMKL----RNLRELILKG-NPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEI 196
              V    +        +L  L +     E+       +     NL+ L  +      ++
Sbjct: 168 VDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKL 227

Query: 197 PESLYYLKSLKHLDLEKNNLTGNVHDF---------YQSLLVLNLGSNRFSGTLPCFAAS 247
              L     L+ L             +          + L  L+   +     LP   + 
Sbjct: 228 ATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSV 287

Query: 248 AMSLTVLKLDNNSVVG-GIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSF 306
              LT L L   +V    +   +     L  L +     +  +       + L  L +  
Sbjct: 288 CSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFP 347

Query: 307 NDLSGPLP---------SKIAQTTEKAGLVLLDLSHNRFSGE------------IPLKIT 345
           ++     P           ++    K  L  +     + +                 ++ 
Sbjct: 348 SEPFVMEPNVALTEQGLVSVSMGCPK--LESVLYFCRQMTNAALITIARNRPNMTRFRLC 405

Query: 346 ELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNN 405
            ++     +L+   L     A + +   L+ + LS  +             ++  L V  
Sbjct: 406 IIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAF 465

Query: 406 NNLSGE-IQPELDALDSLKILDISNNQISGE-IPLTLAGLKSLEIVDFSSNNLS 457
              S   +   L   DSL+ L+I +     + +    + L+++  +  SS ++S
Sbjct: 466 AGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS 519

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 41.8 bits (98), Expect = 7e-04
 Identities = 41/327 (12%), Positives = 99/327 (30%), Gaps = 40/327 (12%)

Query: 181 NLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFS-G 239
            +  ++        +            +  +E       +   Y  L  + L     +  
Sbjct: 67  KVRSVELKGKPHFADFNLVPDGWGGYVYPWIEA------MSSSYTWLEEIRLKRMVVTDD 120

Query: 240 TLPCFAASAMSLTVLKLDNNSVVG--GIPTCIASLQALTHLNLSHNHLNYEISPRLVFFE 297
            L   A S  +  VL L +       G+    A+ + L  L+L  + ++      L  F 
Sbjct: 121 CLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFP 180

Query: 298 KLL--LLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFL 355
                L+ L+ + L+  +          + L  L              +T   +L++L L
Sbjct: 181 DTYTSLVSLNISCLASEV--------SFSALERL--------------VTRCPNLKSLKL 218

Query: 356 SNNLLIGEIPARIGNLTYLQVIDLS------HNMLSGSIPLNIVGCFQLLALIVNNNNLS 409
           +  + + ++   +     L+ +            +   + + + GC +L  L    + + 
Sbjct: 219 NRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVP 278

Query: 410 GEIQPELDALDSLKILDISNNQISGEIPLTLA-GLKSLEIVDFSSNNLSGSLNDAITKWT 468
             +         L  L++S   +     + L      L+ +          L    +   
Sbjct: 279 AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCK 338

Query: 469 NLKYFSIARNKLSGNLPNWLFSFQAIQ 495
           +L+   +  ++     PN   + Q + 
Sbjct: 339 DLRELRVFPSEPFVMEPNVALTEQGLV 365

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 48.5 bits (116), Expect = 1e-06
 Identities = 28/128 (21%), Positives = 50/128 (39%), Gaps = 8/128 (6%)

Query: 353 LFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEI 412
           + L+  L I +   +  N    + +DL    +     L      Q  A+  ++N +  ++
Sbjct: 2   VKLTAEL-IEQAA-QYTNAVRDRELDLRGYKIPVIENLG-ATLDQFDAIDFSDNEIR-KL 57

Query: 413 QPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLND--AITKWTNL 470
                 L  LK L ++NN+I          L  L  +  ++N+L   L D   +    +L
Sbjct: 58  DG-FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSL 115

Query: 471 KYFSIARN 478
            Y  I RN
Sbjct: 116 TYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 15/106 (14%), Positives = 38/106 (35%), Gaps = 5/106 (4%)

Query: 376 VIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGE 435
           ++ L+  ++  +         +   L +    +   I+     LD    +D S+N+I  +
Sbjct: 1   MVKLTAELIEQA--AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-K 56

Query: 436 IPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLS 481
           +      L+ L+ +  ++N +            +L    +  N L 
Sbjct: 57  LD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV 101

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 43.9 bits (104), Expect = 4e-05
 Identities = 22/116 (18%), Positives = 37/116 (31%), Gaps = 11/116 (9%)

Query: 198 ESLYYLKSLKHLDLEKNNLT--GNVHDFYQSLLVLNLGSNRFS--GTLPCFAASAMSLTV 253
                    + LDL    +    N+         ++   N        P        L  
Sbjct: 13  AQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLL----RRLKT 68

Query: 254 LKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNY--EISPRLVFFEKLLLLDLSFN 307
           L ++NN +         +L  LT L L++N L    ++ P L   + L  L +  N
Sbjct: 69  LLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDP-LASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 2/79 (2%)

Query: 566 DLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPG 625
           DL    +   I      L   + ++ S N +  ++ G   LR L+ L +++N +     G
Sbjct: 25  DLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KLDGFPLLRRLKTLLVNNNRICRIGEG 82

Query: 626 NISSLQELTLLNLSYNSFS 644
              +L +LT L L+ NS  
Sbjct: 83  LDQALPDLTELILTNNSLV 101

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 45.4 bits (108), Expect = 7e-06
 Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 1/73 (1%)

Query: 574 GTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQEL 633
           G +     + + LE+L+     L   +  L +L  L+ L+LS N ++G +         L
Sbjct: 32  GKLEGLTDEFEELEFLSTINVGLT-SIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNL 90

Query: 634 TLLNLSYNSFSGF 646
           T LNLS N     
Sbjct: 91  THLNLSGNKIKDL 103

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 24/140 (17%), Positives = 52/140 (37%), Gaps = 30/140 (21%)

Query: 342 LKITELKSLQALFLSNN-LLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLA 400
           L+      ++ L L N+    G++         L+ +   +  L+               
Sbjct: 11  LRNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT--------------- 55

Query: 401 LIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSL 460
                 +++      L  L+ LK L++S+N++SG + +      +L  ++ S N +   L
Sbjct: 56  ------SIAN-----LPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIK-DL 103

Query: 461 ND--AITKWTNLKYFSIARN 478
           +    + K  NLK   +   
Sbjct: 104 STIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 43.5 bits (103), Expect = 3e-05
 Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 2/78 (2%)

Query: 404 NNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDA 463
           N+ +  G+++   D  + L+ L   N  ++  I   L  L  L+ ++ S N +SG L   
Sbjct: 26  NSRSNEGKLEGLTDEFEELEFLSTINVGLT-SIAN-LPKLNKLKKLELSDNRVSGGLEVL 83

Query: 464 ITKWTNLKYFSIARNKLS 481
             K  NL + +++ NK+ 
Sbjct: 84  AEKCPNLTHLNLSGNKIK 101

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 42.4 bits (100), Expect = 8e-05
 Identities = 25/107 (23%), Positives = 41/107 (38%), Gaps = 5/107 (4%)

Query: 181 NLEKLDFSFNSF-CGEIPESLYYLKSLKHLDLEKNNLT--GNVHDFYQSLLVLNLGSNRF 237
           ++++L    +    G++       + L+ L      LT   N+      L  L L  NR 
Sbjct: 18  DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKL-NKLKKLELSDNRV 76

Query: 238 SGTLPCFAASAMSLTVLKLDNNSVVG-GIPTCIASLQALTHLNLSHN 283
           SG L   A    +LT L L  N +        +  L+ L  L+L + 
Sbjct: 77  SGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 45.9 bits (109), Expect = 8e-06
 Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 1/71 (1%)

Query: 574 GTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQEL 633
           G I     +   LE+L+L    L   V  L +L  L+ L+LS N + G +      L  L
Sbjct: 39  GKIEGLTAEFVNLEFLSLINVGLI-SVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNL 97

Query: 634 TLLNLSYNSFS 644
           T LNLS N   
Sbjct: 98  THLNLSGNKLK 108

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 45.1 bits (107), Expect = 1e-05
 Identities = 26/136 (19%), Positives = 47/136 (34%), Gaps = 30/136 (22%)

Query: 346 ELKSLQALFLSNN-LLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVN 404
              +++ L L N     G+I         L+ + L +  L                    
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI------------------- 62

Query: 405 NNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLND-- 462
             ++S      L  L  LK L++S N+I G + +    L +L  ++ S N L   ++   
Sbjct: 63  --SVSN-----LPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLK-DISTLE 114

Query: 463 AITKWTNLKYFSIARN 478
            + K   LK   +   
Sbjct: 115 PLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 40.5 bits (95), Expect = 6e-04
 Identities = 30/113 (26%), Positives = 40/113 (35%), Gaps = 9/113 (7%)

Query: 155 NLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKN 214
            +REL+L       G   G    F  NLE L             +L  L  LK L+L +N
Sbjct: 25  AVRELVLDNCKSNDGKIEGLTAEFV-NLEFLSLINVGL--ISVSNLPKLPKLKKLELSEN 81

Query: 215 NLT---GNVHDFYQSLLVLNLGSNRFS--GTLPCFAASAMSLTVLKLDNNSVV 262
            +      + +   +L  LNL  N+     TL         L  L L N  V 
Sbjct: 82  RIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPL-KKLECLKSLDLFNCEVT 133

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 46.9 bits (112), Expect = 1e-05
 Identities = 53/213 (24%), Positives = 85/213 (39%), Gaps = 31/213 (14%)

Query: 230 LNLGSNRFSGTLPCFAASAMSLTVLKLDNNSV--VGGIPTCIASLQALTHLNLSHNHLNY 287
            NL     +           S+  +  +N+ +  V GI      L  + +L L  N L+ 
Sbjct: 24  ANLKKKSVT-DAVTQN-ELNSIDQIIANNSDIKSVQGIQ----YLPNVRYLALGGNKLH- 76

Query: 288 EISPRLVFFEKLL---LLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKI 344
                +   ++L     L L+ N L   LP+ +        L  L L  N+    +P  +
Sbjct: 77  ----DISALKELTNLTYLILTGNQLQS-LPNGVFDKLTN--LKELVLVENQLQ-SLPDGV 128

Query: 345 -TELKSLQALFLSNNLLIGEIPARI-GNLTYLQVIDLSHNMLSGSIPLNIVGCF----QL 398
             +L +L  L L++N L   +P  +   LT L  +DLS+N L  S+P    G F    QL
Sbjct: 129 FDKLTNLTYLNLAHNQL-QSLPKGVFDKLTNLTELDLSYNQLQ-SLP---EGVFDKLTQL 183

Query: 399 LALIVNNNNLSGEIQPELDALDSLKILDISNNQ 431
             L +  N L        D L SL+ + + +N 
Sbjct: 184 KDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 216

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 38/119 (31%), Positives = 54/119 (45%), Gaps = 14/119 (11%)

Query: 104 KLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKG 163
           +L+ L +L+L+ N      +  F  L+ LK L L  N+   +      KL NL  L L  
Sbjct: 83  ELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAH 142

Query: 164 N-----PELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLY-YLKSLKHLDLEKNNL 216
           N     P+  GVF         NL +LD S+N     +PE ++  L  LK L L +N L
Sbjct: 143 NQLQSLPK--GVFDKLT-----NLTELDLSYNQL-QSLPEGVFDKLTQLKDLRLYQNQL 193

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 40/138 (28%), Positives = 50/138 (36%), Gaps = 22/138 (15%)

Query: 109 EFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGV---VPDAIMKLRNLRELILKGN- 164
           + L L  N  T      F  L  LK L L  N+   +   V D    L  L  L L  N 
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFD---SLTQLTVLDLGTNQ 99

Query: 165 ----PELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNV 220
               P    VF   V     +L++L    N    E+P  +  L  L HL L++N L    
Sbjct: 100 LTVLPS--AVFDRLV-----HLKELFMCCNKL-TELPRGIERLTHLTHLALDQNQLKSIP 151

Query: 221 H---DFYQSLLVLNLGSN 235
           H   D   SL    L  N
Sbjct: 152 HGAFDRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 41.6 bits (98), Expect = 4e-04
 Identities = 39/133 (29%), Positives = 51/133 (38%), Gaps = 8/133 (6%)

Query: 252 TVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVF--FEKLLLLDLSFNDL 309
            +L L +N +    P    SL  L  L L  N L     P  VF    +L +LDL  N L
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQL--GALPVGVFDSLTQLTVLDLGTNQL 100

Query: 310 SGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIG 369
           +  LPS +        L  L +  N+ + E+P  I  L  L  L L  N L         
Sbjct: 101 TV-LPSAVFDRLVH--LKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFD 156

Query: 370 NLTYLQVIDLSHN 382
            L+ L    L  N
Sbjct: 157 RLSSLTHAYLFGN 169

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 47.0 bits (112), Expect = 2e-05
 Identities = 43/306 (14%), Positives = 87/306 (28%), Gaps = 57/306 (18%)

Query: 181 NLEKLDFSFNSFCGEIPESLYYL-----KSLKHLDLEKNNLTGN-VHDFYQSLLV---LN 231
           +L +L+ +           +  +      +L  ++L    L    +       L    L 
Sbjct: 73  SLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLG 132

Query: 232 LGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYE--- 288
           L  N           +   L  L L +                +T L LS+N L      
Sbjct: 133 LQLNSLG------PEACKDLRDLLLHDQCQ-------------ITTLRLSNNPLTAAGVA 173

Query: 289 -ISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEK-AGLVLLDLSHNRFSGEIPLKITE 346
            +   L     +  L L    L       +A   ++   L  L++++N       L +  
Sbjct: 174 VLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALAR 233

Query: 347 L----KSLQALFLSNNLL-------IGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGC 395
                 SL+ L L  N L       + ++         + V       +S          
Sbjct: 234 AAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS------EYWS 287

Query: 396 FQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLA-GLK---SLEIVDF 451
             L  +  N N+     +  +     L + D+ +++ +   P   A  L+    +  +  
Sbjct: 288 VILSEVQRNLNSWD---RARVQRHLELLLRDLEDSRGATLNPWRKAQLLRVEGEVRALLE 344

Query: 452 SSNNLS 457
              +  
Sbjct: 345 QLGSSG 350

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 43.1 bits (102), Expect = 9e-05
 Identities = 34/110 (30%), Positives = 52/110 (47%), Gaps = 13/110 (11%)

Query: 351 QALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCF----QLLALIVNNN 406
             L+L  N     +P  + N  +L +IDLS+N +S ++       F    QLL LI++ N
Sbjct: 34  TELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIS-TLS---NQSFSNMTQLLTLILSYN 88

Query: 407 NLSGEIQPEL-DALDSLKILDISNNQISGEIPL-TLAGLKSLEIVDFSSN 454
            L   I P   D L SL++L +  N IS  +P      L +L  +   +N
Sbjct: 89  RLR-CIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGAN 136

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	732
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	100.0
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.98
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.98
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.97
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.96
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.96
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.96
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.96
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.95
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.95
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.95
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.95
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.95
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.95
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.95
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.95
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.94
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.94
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.94
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.94
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.94
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.94
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.94
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.94
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.93
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.93
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.92
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.92
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.9
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.9
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.9
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.89
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.89
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.88
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.88
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.88
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.88
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.88
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.88
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.87
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.87
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.87
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.87
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.86
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.86
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.85
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.85
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.84
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.84
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.82
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.81
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.81
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.79
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.79
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.76
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.75
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.74
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.74
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.74
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.73
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.73
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.73
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.73
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.73
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.72
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.72
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.72
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.71
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.71
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.7
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.7
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.7
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.67
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.67
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.65
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.65
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.61
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.59
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.57
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.56
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.56
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.55
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.55
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.51
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.51
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.5
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.5
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.48
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.48
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.47
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.43
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.42
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.42
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.42
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.4
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.38
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.33
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.3
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.28
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.27
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.22
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.19
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.15
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.11
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.86
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.84
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.76
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.69
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.57
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.28
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.28
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.28
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.99
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.78
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.67
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.63
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.62
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.2

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=1.1e-85  Score=771.52  Aligned_cols=630  Identities=33%  Similarity=0.461  Sum_probs=499.7

Q ss_pred             CHHhHHHHHHHHhcCCCCCCCCCCC-CCCCCCCccceeecCCCCcEEEEEcCCCCCccc---cc----------------
Q 004747           40 NLEDKASLLLFKSLVQDPTQKLSSW-VGSNCTNWTGVACNFQTGHVVSINLTDTSLSGQ---VH----------------   99 (732)
Q Consensus        40 ~~~~~~~l~~~k~~~~~~~~~l~~w-~~~~~c~w~gv~c~~~~~~v~~L~L~~~~l~~~---~~----------------   99 (732)
                      ..+|++||++||+++.||. .+++| .+++||.|.||+|+  .++|++|+|+++.+.|.   ++                
T Consensus        10 ~~~~~~all~~k~~~~~~~-~l~~W~~~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~   86 (768)
T 3rgz_A           10 LYREIHQLISFKDVLPDKN-LLPDWSSNKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSN   86 (768)
T ss_dssp             HHHHHHHHHHHHTTCSCTT-SSTTCCTTSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTT
T ss_pred             CHHHHHHHHHHHhhCCCcc-cccCCCCCCCCcCCcceEEC--CCcEEEEECCCCCcCCccCccChhHhccCcccccCCcC
Confidence            4578889999999999988 89999 67899999999998  68999999999999886   44                


Q ss_pred             -------ccccCCCCCCEEECCCCCCCCcccc--cccCCCCCCEEECCCCCCCCCCCccc-cCCCCCCEEeCCCCCCCCC
Q 004747          100 -------PRLCKLSFLEFLVLSSNAFTGRIST--CFGGLSGLKTLDLSYNKFVGVVPDAI-MKLRNLRELILKGNPELGG  169 (732)
Q Consensus       100 -------~~l~~l~~L~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~Ls~n~l~~~~p~~~-~~l~~L~~L~Ls~n~~~~~  169 (732)
                             ..++++++|++|+|++|.++|.+|.  .++++++|++|||++|.+.+.+|..+ .++++|++|+|++|. +.+
T Consensus        87 ~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~  165 (768)
T 3rgz_A           87 SHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANS-ISG  165 (768)
T ss_dssp             SCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSC-CEE
T ss_pred             CCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCc-cCC
Confidence                   4677889999999999999888887  88888888888888888877776654 556666666666552 222


Q ss_pred             cCCch-------------------------hhhcccCCcEEEeeCcccccccCcccCCCCCCCEEEeecccCCCcccc--
Q 004747          170 VFPGW-------------------------VGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHD--  222 (732)
Q Consensus       170 ~~p~~-------------------------~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~--  222 (732)
                      ..|..                         +..+ ++|++|++++|.+++.+|. ++++++|++|++++|.+++..+.  
T Consensus       166 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l  243 (768)
T 3rgz_A          166 ANVVGWVLSDGCGELKHLAISGNKISGDVDVSRC-VNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAI  243 (768)
T ss_dssp             ETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTC-TTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHT
T ss_pred             cCChhhhhhccCCCCCEEECCCCcccccCCcccC-CcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHH
Confidence            22211                         0222 4455555555555544443 55555555555555555443333  


Q ss_pred             -----------------------ccccccEEECCCCcCccccCchhhcc-cccCeeeCCCCccccccchhhhccCCCCEE
Q 004747          223 -----------------------FYQSLLVLNLGSNRFSGTLPCFAASA-MSLTVLKLDNNSVVGGIPTCIASLQALTHL  278 (732)
Q Consensus       223 -----------------------~~~~L~~L~L~~n~l~~~~~~~~~~~-~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L  278 (732)
                                             .+.+|++|++++|.+++.+|..+... ++|++|++++|.+++.+|..++++++|++|
T Consensus       244 ~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L  323 (768)
T 3rgz_A          244 STCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESL  323 (768)
T ss_dssp             TTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEE
T ss_pred             hcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEE
Confidence                                   23346666666666666667666554 778888888888877778888888888888


Q ss_pred             EeccCCCCCcCccc-cccCcCCcEEEccCCCCCCCCchhhhhcCCCCCccEEeCCCCcccCCCcccccC--CCCCCEEec
Q 004747          279 NLSHNHLNYEISPR-LVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITE--LKSLQALFL  355 (732)
Q Consensus       279 ~L~~n~l~~~~~~~-l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~--l~~L~~L~L  355 (732)
                      ++++|.+++.+|.. +..+++|++|++++|.+++.+|..+..+..  +|++|++++|.+++.+|..+..  +++|++|++
T Consensus       324 ~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~--~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L  401 (768)
T 3rgz_A          324 ALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSA--SLLTLDLSSNNFSGPILPNLCQNPKNTLQELYL  401 (768)
T ss_dssp             ECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTT--TCSEEECCSSEEEEECCTTTTCSTTCCCCEEEC
T ss_pred             ECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhc--CCcEEEccCCCcCCCcChhhhhcccCCccEEEC
Confidence            88888887777765 777888888888888888777877776542  6888888888888878877766  788999999


Q ss_pred             cCccCCCccccccCCCCCCCEEEccCCcCccccCccccCCcCcceeecccccccccCcccccCCCCCcEEEcccCceeee
Q 004747          356 SNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGE  435 (732)
Q Consensus       356 s~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  435 (732)
                      ++|.+++.+|..++++++|++|++++|.+++.+|..+..+++|+.|++++|.+.+.+|..+..+++|++|++++|++++.
T Consensus       402 ~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~  481 (768)
T 3rgz_A          402 QNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGE  481 (768)
T ss_dssp             CSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSC
T ss_pred             CCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCCCCCCEEEccCCcccccchhhhhcCCCCCEEEcccCCCccccchhhhcCCCCCEEEccCCcCcccCCcccccC
Q 004747          436 IPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDGNFNF  515 (732)
Q Consensus       436 ~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~  515 (732)
                      +|..+.++++|++|++++|++++.+|.+++.+++|++|++++|+++|.+|..+..+++|++|++++|+++|.+|..++..
T Consensus       482 ~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~  561 (768)
T 3rgz_A          482 IPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQ  561 (768)
T ss_dssp             CCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTT
T ss_pred             CCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999987654


Q ss_pred             ccccCcCCCCC--------------------------CCCCCcccCCCceeEEeEEEeecCCchhhhhhcccceEEEccC
Q 004747          516 SLNFNKSDIGR--------------------------SMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVGMDLSD  569 (732)
Q Consensus       516 ~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~  569 (732)
                      ...........                          ..+.............+....+++........++.|+.|||++
T Consensus       562 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~  641 (768)
T 3rgz_A          562 SGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSY  641 (768)
T ss_dssp             TTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCS
T ss_pred             cchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcC
Confidence            21110000000                          0000000000000000001112222223345678899999999


Q ss_pred             CcccccCCcccccccCCceeecccccceecCCc-ccCccCCcEEeCCCCcCcccCCcCCCCCCCCCEEEcccCcceeeCC
Q 004747          570 NLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVP  648 (732)
Q Consensus       570 N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~-l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip  648 (732)
                      |+++|.+|.+++++++|+.|+|++|+++|.+|. ++++++|++||||+|+++|.+|..++.+++|++||+++|+++|.||
T Consensus       642 N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP  721 (768)
T 3rgz_A          642 NMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP  721 (768)
T ss_dssp             SCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECC
T ss_pred             CcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCC
Confidence            999999999999999999999999999999999 9999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCcCc-cccCCCCCCCCCCCCCCCCC
Q 004747          649 WKQGYQKFPG-AFAGNPNLCLESSHGECNRT  678 (732)
Q Consensus       649 ~~~~~~~~~~-~~~gn~~lcg~~~~~~c~~~  678 (732)
                      ..+++.+|+. +|.|||++||.|+. .|...
T Consensus       722 ~~~~~~~~~~~~~~gN~~Lcg~~l~-~C~~~  751 (768)
T 3rgz_A          722 EMGQFETFPPAKFLNNPGLCGYPLP-RCDPS  751 (768)
T ss_dssp             SSSSGGGSCGGGGCSCTEEESTTSC-CCCSC
T ss_pred             CchhhccCCHHHhcCCchhcCCCCc-CCCCC
Confidence            9999999988 99999999999987 89754

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=1.3e-64  Score=593.17  Aligned_cols=558  Identities=31%  Similarity=0.446  Sum_probs=434.2

Q ss_pred             CcEEEEEcCCCCCcccccccc-cCCCCCCEEECCCCCCCCccccc---c----------------------cCCCCCCEE
Q 004747           82 GHVVSINLTDTSLSGQVHPRL-CKLSFLEFLVLSSNAFTGRISTC---F----------------------GGLSGLKTL  135 (732)
Q Consensus        82 ~~v~~L~L~~~~l~~~~~~~l-~~l~~L~~L~Ls~n~l~~~~~~~---~----------------------~~l~~L~~L  135 (732)
                      .+++.|++++|.+.+.++..+ .++++|++|++++|.+++..+..   +                      ..+++|++|
T Consensus       126 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L  205 (768)
T 3rgz_A          126 SGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFL  205 (768)
T ss_dssp             TTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEE
T ss_pred             CCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEE
Confidence            356777777776666655544 55666666666666665544433   2                      566677777


Q ss_pred             ECCCCCCCCCCCccccCCCCCCEEeCCCCCCCCCcCCchhhhcccCCcEEEeeCcccccccCcccCCCCCCCEEEeeccc
Q 004747          136 DLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNN  215 (732)
Q Consensus       136 ~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~  215 (732)
                      ++++|.+++.+|. ++++++|++|++++| .+.+.+|..++.+ ++|++|++++|.+.+.+|..  .+++|++|++++|.
T Consensus       206 ~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n-~l~~~~~~~l~~l-~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~  280 (768)
T 3rgz_A          206 DVSSNNFSTGIPF-LGDCSALQHLDISGN-KLSGDFSRAISTC-TELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENK  280 (768)
T ss_dssp             ECCSSCCCSCCCB-CTTCCSCCEEECCSS-CCCSCHHHHTTTC-SSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSE
T ss_pred             ECcCCcCCCCCcc-cccCCCCCEEECcCC-cCCCcccHHHhcC-CCCCEEECCCCcccCccCcc--ccCCCCEEECcCCc
Confidence            7777777766665 777777778887777 5666777777777 77888888888877766654  77888888888888


Q ss_pred             CCCcccccc----ccccEEECCCCcCccccCchhhcccccCeeeCCCCccccccchh-hhccCCCCEEEeccCCCCCcCc
Q 004747          216 LTGNVHDFY----QSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTC-IASLQALTHLNLSHNHLNYEIS  290 (732)
Q Consensus       216 l~~~~~~~~----~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~-l~~l~~L~~L~L~~n~l~~~~~  290 (732)
                      +++.+|..+    .+|++|++++|.+++.+|..++.+++|++|++++|.+.+.+|.. +.++++|++|++++|.+++.+|
T Consensus       281 l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p  360 (768)
T 3rgz_A          281 FTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELP  360 (768)
T ss_dssp             EEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCC
T ss_pred             cCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCcccc
Confidence            887777654    56999999999999999999999999999999999999888876 8999999999999999999999


Q ss_pred             cccccCc-CCcEEEccCCCCCCCCchhhhhcCCCCCccEEeCCCCcccCCCcccccCCCCCCEEeccCccCCCccccccC
Q 004747          291 PRLVFFE-KLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIG  369 (732)
Q Consensus       291 ~~l~~l~-~L~~L~Ls~n~l~~~~p~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~  369 (732)
                      ..+..++ +|++|++++|.+++.+|..+... ..++|++|++++|.+++.+|..+..+++|++|++++|.+++.+|..++
T Consensus       361 ~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~-~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~  439 (768)
T 3rgz_A          361 ESLTNLSASLLTLDLSSNNFSGPILPNLCQN-PKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLG  439 (768)
T ss_dssp             TTHHHHTTTCSEEECCSSEEEEECCTTTTCS-TTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGG
T ss_pred             HHHHhhhcCCcEEEccCCCcCCCcChhhhhc-ccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHh
Confidence            9999887 99999999999998888877651 123899999999999999999999999999999999999999999999


Q ss_pred             CCCCCCEEEccCCcCccccCccccCCcCcceeecccccccccCcccccCCCCCcEEEcccCceeeeccccCCCCCCCCEE
Q 004747          370 NLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIV  449 (732)
Q Consensus       370 ~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L  449 (732)
                      .+++|++|++++|.+++.+|..+..+++|+.|++++|++++.+|..+..+++|++|++++|++++.+|.++..+++|++|
T Consensus       440 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L  519 (768)
T 3rgz_A          440 SLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAIL  519 (768)
T ss_dssp             GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEE
T ss_pred             cCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EccCCcccccchhhhhcCCCCCEEEcccCCCccccchhhhcCCCCCEEEccCCc----------------------Cccc
Q 004747          450 DFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNK----------------------FMGF  507 (732)
Q Consensus       450 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~ls~N~----------------------l~~~  507 (732)
                      ++++|++++.+|..++.+++|++|++++|+++|.+|..+.....+..+++..+.                      +.|.
T Consensus       520 ~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  599 (768)
T 3rgz_A          520 KLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGI  599 (768)
T ss_dssp             ECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTC
T ss_pred             ECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccc
Confidence            999999999999999999999999999999999998877654433332222100                      0000


Q ss_pred             CCcccccCcc----ccCcCCCCCCCCCCcccCCCceeEEeEEEeecCCchhhhhhcccceEEEccCCcccccCCcccccc
Q 004747          508 IPDGNFNFSL----NFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGTIPKGLFQL  583 (732)
Q Consensus       508 ~p~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l  583 (732)
                      .+........    .+....+.+..+......+....++++...+.+.....+..++.|+.|||++|+++|.+|..++++
T Consensus       600 ~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L  679 (768)
T 3rgz_A          600 RSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDL  679 (768)
T ss_dssp             CGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGC
T ss_pred             cchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCC
Confidence            1100000000    000000000000000001112222232233333333344568899999999999999999999999


Q ss_pred             cCCceeecccccceecCCc-ccCccCCcEEeCCCCcCcccCCcCCCCCCCCCEEEcccCc-ceee
Q 004747          584 QGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNS-FSGF  646 (732)
Q Consensus       584 ~~L~~L~Ls~N~l~~~ip~-l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~-l~g~  646 (732)
                      ++|++|||++|+++|.+|. +.++++|++||||+|+++|.||.. ..+..+....+.+|+ +.|.
T Consensus       680 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~~Lcg~  743 (768)
T 3rgz_A          680 RGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFETFPPAKFLNNPGLCGY  743 (768)
T ss_dssp             TTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS-SSGGGSCGGGGCSCTEEEST
T ss_pred             CCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc-hhhccCCHHHhcCCchhcCC
Confidence            9999999999999999999 999999999999999999999975 345556666677775 5553

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=1.5e-58  Score=536.86  Aligned_cols=540  Identities=22%  Similarity=0.211  Sum_probs=392.2

Q ss_pred             CCcEEEEEcCCCCCcccccccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEECCCCCCCCCCCccccCCCCCCEEe
Q 004747           81 TGHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELI  160 (732)
Q Consensus        81 ~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~  160 (732)
                      ..++++|+++++.+++..+..+.++++|++|++++|.+++..|..|+++++|++|+|++|.+++..+.+|+++++|++|+
T Consensus        24 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~  103 (680)
T 1ziw_A           24 PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELH  103 (680)
T ss_dssp             CTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred             CCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEE
Confidence            35899999999999988778899999999999999999999999999999999999999999977777899999999999


Q ss_pred             CCCCCCCCCcCCchhhhcccCCcEEEeeCcccccccCcccCCCCCCCEEEeecccCCCcccccc-----ccccEEECCCC
Q 004747          161 LKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFY-----QSLLVLNLGSN  235 (732)
Q Consensus       161 Ls~n~~~~~~~p~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~-----~~L~~L~L~~n  235 (732)
                      +++| .+.+..|..++++ ++|++|++++|.+++..|..+.++++|++|++++|.+++..+..+     .+|++|++++|
T Consensus       104 L~~n-~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n  181 (680)
T 1ziw_A          104 LMSN-SIQKIKNNPFVKQ-KNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSN  181 (680)
T ss_dssp             CCSS-CCCCCCSCTTTTC-TTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTC
T ss_pred             CCCC-ccCccChhHcccc-CCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCC
Confidence            9999 5667777888888 899999999999999889999999999999999999998877632     46999999999


Q ss_pred             cCccccCchhhcccc---------------------------cCeeeCCCCccccccchhhhccCC--CCEEEeccCCCC
Q 004747          236 RFSGTLPCFAASAMS---------------------------LTVLKLDNNSVVGGIPTCIASLQA--LTHLNLSHNHLN  286 (732)
Q Consensus       236 ~l~~~~~~~~~~~~~---------------------------L~~L~Ls~n~l~~~~~~~l~~l~~--L~~L~L~~n~l~  286 (732)
                      .+++..|..+..+.+                           |+.|++++|.+.+..|.++..++.  |++|++++|.++
T Consensus       182 ~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~  261 (680)
T 1ziw_A          182 QIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLN  261 (680)
T ss_dssp             CCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCC
T ss_pred             cccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcC
Confidence            999888887776655                           455555555555555555555543  666666666666


Q ss_pred             CcCccccccCcCCcEEEccCCCCCCCCchhhhhcCCCCCccEEeCCCCcccC-----CCcc----cccCCCCCCEEeccC
Q 004747          287 YEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSG-----EIPL----KITELKSLQALFLSN  357 (732)
Q Consensus       287 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~L~~L~Ls~n~l~~-----~~p~----~l~~l~~L~~L~Ls~  357 (732)
                      +..+..+..+++|++|++++|.+++..|..+..+.   +|+.|++++|...+     .+|.    .+..+++|++|++++
T Consensus       262 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~---~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~  338 (680)
T 1ziw_A          262 VVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLF---NVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMED  338 (680)
T ss_dssp             EECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCT---TCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCS
T ss_pred             ccCcccccCcccccEeeCCCCccCccChhhhcCCC---CccEEeccchhhhcccccccccccChhhcccCCCCCEEECCC
Confidence            55555566666666666666666655555555444   56666666554332     1222    455566666666666


Q ss_pred             ccCCCccccccCCCCCCCEEEccCCcCcccc--CccccC--CcCcceeecccccccccCcccccCCCCCcEEEcccCcee
Q 004747          358 NLLIGEIPARIGNLTYLQVIDLSHNMLSGSI--PLNIVG--CFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQIS  433 (732)
Q Consensus       358 n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~--p~~~~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  433 (732)
                      |.+++..+..+.++++|++|++++|.+.+..  +..+..  .++|+.|++++|++++..+..+..+++|+.|++++|.++
T Consensus       339 n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  418 (680)
T 1ziw_A          339 NDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIG  418 (680)
T ss_dssp             CCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCE
T ss_pred             CccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCc
Confidence            6666655555666666666666666543211  112222  235666666666666666666666666666666666666


Q ss_pred             eecc-ccCCCCCCCCEEEccCCcccccchhhhhcCCCCCEEEcccCCCc--cccchhhhcCCCCCEEEccCCcCcccCCc
Q 004747          434 GEIP-LTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLS--GNLPNWLFSFQAIQMMDFSTNKFMGFIPD  510 (732)
Q Consensus       434 ~~~p-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~--~~~p~~~~~~~~L~~L~ls~N~l~~~~p~  510 (732)
                      +.+| ..+.++++|++|++++|++.+..+..+..+++|++|++++|.+.  +.+|..+..+++|++|++++|++++..| 
T Consensus       419 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~-  497 (680)
T 1ziw_A          419 QELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANIND-  497 (680)
T ss_dssp             EECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCT-
T ss_pred             cccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCCh-
Confidence            5554 45666666666666666666666666666666666666666665  4456666666666666666666654322 


Q ss_pred             ccccCccccCcCCCCCCCCCCcccCCCceeEEeEEEeecCCchhhhhhcccceEEEccCCcccccC----C----ccccc
Q 004747          511 GNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGTI----P----KGLFQ  582 (732)
Q Consensus       511 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~i----p----~~l~~  582 (732)
                      ..|                                           ..+++|++|++++|++++..    |    ..+.+
T Consensus       498 ~~~-------------------------------------------~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~  534 (680)
T 1ziw_A          498 DML-------------------------------------------EGLEKLEILDLQHNNLARLWKHANPGGPIYFLKG  534 (680)
T ss_dssp             TTT-------------------------------------------TTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTT
T ss_pred             hhh-------------------------------------------ccccccCEEeCCCCCccccchhhccCCcchhhcC
Confidence            222                                           23788999999999998542    1    23778


Q ss_pred             ccCCceeecccccceecCCc-ccCccCCcEEeCCCCcCcccCCcCCCCCCCCCEEEcccCcceeeCCCCC--CCCCcCc-
Q 004747          583 LQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVPWKQ--GYQKFPG-  658 (732)
Q Consensus       583 l~~L~~L~Ls~N~l~~~ip~-l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~--~~~~~~~-  658 (732)
                      +++|++|+|++|+++...+. +.++++|+.|||++|++++..+..|..+++|++|++++|++++..|...  .+..+.. 
T Consensus       535 l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l  614 (680)
T 1ziw_A          535 LSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTEL  614 (680)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEE
T ss_pred             CCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEE
Confidence            99999999999999844444 7889999999999999998777888999999999999999998776432  2344445 


Q ss_pred             cccCCCCCCCC
Q 004747          659 AFAGNPNLCLE  669 (732)
Q Consensus       659 ~~~gn~~lcg~  669 (732)
                      .+.|||..|..
T Consensus       615 ~l~~N~~~c~c  625 (680)
T 1ziw_A          615 DMRFNPFDCTC  625 (680)
T ss_dssp             ECTTCCCCBCC
T ss_pred             EccCCCcccCC
Confidence            78999998854

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=1.1e-56  Score=514.17  Aligned_cols=513  Identities=18%  Similarity=0.150  Sum_probs=326.7

Q ss_pred             cEEEEEcCCCCCcccccccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEECCCCCCCCCCCccccCCCCCCEEeCC
Q 004747           83 HVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILK  162 (732)
Q Consensus        83 ~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls  162 (732)
                      .++.|++++|.+++..+.++.++++|++|++++|++++..|..|+++++|++|+|++|.+++..|..|+++++|++|+++
T Consensus        34 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  113 (606)
T 3t6q_A           34 STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFI  113 (606)
T ss_dssp             TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECT
T ss_pred             cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeecc
Confidence            45555555555554444455555555555555555554445555555555555555555555555555555555555555


Q ss_pred             CCCCCCCcCCchhhhcccCCcEEEeeCcccccccCcccCCCCCCCEEEeecccCCCcccccc---cccc--EEECCCCcC
Q 004747          163 GNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFY---QSLL--VLNLGSNRF  237 (732)
Q Consensus       163 ~n~~~~~~~p~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~---~~L~--~L~L~~n~l  237 (732)
                      +| .+.+..|..++.+ ++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+   .+|+  .|++++|.+
T Consensus       114 ~n-~i~~l~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l  191 (606)
T 3t6q_A          114 QT-GISSIDFIPLHNQ-KTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDI  191 (606)
T ss_dssp             TS-CCSCGGGSCCTTC-TTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCC
T ss_pred             cc-CcccCCcchhccC-CcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCcc
Confidence            55 2333333334444 455555555555554322233335555555555555554443322   2244  455555555


Q ss_pred             ccccCchhhcccccCeeeCCCCccccccchhhhccCCCCEEEeccCCCC-----CcCccccccCc--CCcEEEccCCCCC
Q 004747          238 SGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLN-----YEISPRLVFFE--KLLLLDLSFNDLS  310 (732)
Q Consensus       238 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~-----~~~~~~l~~l~--~L~~L~Ls~n~l~  310 (732)
                      ++..|..+.. .+|++|++++|.   ..+..+..+.+++...+....+.     ...+..+..+.  +|+.|++++|.++
T Consensus       192 ~~~~~~~~~~-~~L~~L~l~~~~---~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~  267 (606)
T 3t6q_A          192 AGIEPGAFDS-AVFQSLNFGGTQ---NLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFF  267 (606)
T ss_dssp             CEECTTTTTT-CEEEEEECTTCS---CHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCS
T ss_pred             CccChhHhhh-ccccccccCCch---hHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccC
Confidence            5444433322 345555555544   22333334433333322222111     11112222222  6778888888887


Q ss_pred             CCCchhhhhcCCCCCccEEeCCCCcccCCCcccccCCCCCCEEeccCccCCCccccccCCCCCCCEEEccCCcCccccCc
Q 004747          311 GPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPL  390 (732)
Q Consensus       311 ~~~p~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~  390 (732)
                      +..+..+..++   +|++|++++|.++ .+|..+..+++|++|++++|.+++..|..+..+++|++|++++|.+.+.+|.
T Consensus       268 ~~~~~~~~~l~---~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~  343 (606)
T 3t6q_A          268 NISSNTFHCFS---GLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGT  343 (606)
T ss_dssp             SCCTTTTTTCT---TCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCS
T ss_pred             ccCHHHhcccc---CCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccch
Confidence            66665566555   7888888888887 6777777788888888888888777777778888888888888877766654


Q ss_pred             c-ccCCcCcceeecccccccccC--cccccCCCCCcEEEcccCceeeeccccCCCCCCCCEEEccCCcccccchh-hhhc
Q 004747          391 N-IVGCFQLLALIVNNNNLSGEI--QPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLND-AITK  466 (732)
Q Consensus       391 ~-~~~~~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~  466 (732)
                      . +..+++|+.|++++|.+.+..  +..+..+++|++|++++|.+.+..|..+..+++|++|++++|++++..+. .+..
T Consensus       344 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~  423 (606)
T 3t6q_A          344 GCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQN  423 (606)
T ss_dssp             STTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTT
T ss_pred             hhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhC
Confidence            3 677788888888888877665  56677788888888888888777777778888888888888888766543 3677


Q ss_pred             CCCCCEEEcccCCCccccchhhhcCCCCCEEEccCCcCcccC-CcccccCccccCcCCCCCCCCCCcccCCCceeEEeEE
Q 004747          467 WTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFI-PDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISV  545 (732)
Q Consensus       467 l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~ls~N~l~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  545 (732)
                      +++|++|++++|.+.+..|..+..+++|++|++++|++++.. |..                                  
T Consensus       424 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~----------------------------------  469 (606)
T 3t6q_A          424 LHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKT----------------------------------  469 (606)
T ss_dssp             CTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSS----------------------------------
T ss_pred             cccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccc----------------------------------
Confidence            888888888888887777777778888888888888776521 110                                  


Q ss_pred             EeecCCchhhhhhcccceEEEccCCcccccCCcccccccCCceeecccccceecCCc-ccCccCCcEEeCCCCcCcccCC
Q 004747          546 TAIDTNELSFNYQLFSAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIP  624 (732)
Q Consensus       546 ~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~-l~~l~~L~~LdLs~N~l~~~ip  624 (732)
                              .....+++|+.|++++|++++..|..+.++++|++|+|++|++++.+|. +.+++.| .|||++|++++.+|
T Consensus       470 --------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~  540 (606)
T 3t6q_A          470 --------NSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILP  540 (606)
T ss_dssp             --------CGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCG
T ss_pred             --------hhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCH
Confidence                    0112367778888888888877777888888888888888888877776 7778888 88888888887777


Q ss_pred             cCCCCCCCCCEEEcccCcceeeCC
Q 004747          625 GNISSLQELTLLNLSYNSFSGFVP  648 (732)
Q Consensus       625 ~~l~~l~~L~~L~ls~N~l~g~ip  648 (732)
                      ..+..+++|++|++++|++.+..+
T Consensus       541 ~~~~~l~~L~~L~l~~N~~~c~c~  564 (606)
T 3t6q_A          541 SLLPILSQQRTINLRQNPLDCTCS  564 (606)
T ss_dssp             GGHHHHHTSSEEECTTCCEECSGG
T ss_pred             hhcccCCCCCEEeCCCCCccccCC
Confidence            777778888888888888877554

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=7.9e-56  Score=514.00  Aligned_cols=525  Identities=21%  Similarity=0.194  Sum_probs=451.3

Q ss_pred             CcEEEEEcCCCCCcccccccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEECCCCCCCCCCCccccCCCCCCEEeC
Q 004747           82 GHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELIL  161 (732)
Q Consensus        82 ~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L  161 (732)
                      .+++.|+++++.+++..+..+.++++|++|++++|.+++..+..|+++++|++|++++|.+++..|..|+++++|++|++
T Consensus        49 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  128 (680)
T 1ziw_A           49 SQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDL  128 (680)
T ss_dssp             TTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEEC
T ss_pred             CcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEEC
Confidence            47899999999999888888999999999999999998766667999999999999999999888889999999999999


Q ss_pred             CCCCCCCCcCCchhhhcccCCcEEEeeCcccccccCcccC--CCCCCCEEEeecccCCCcccccc---------------
Q 004747          162 KGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLY--YLKSLKHLDLEKNNLTGNVHDFY---------------  224 (732)
Q Consensus       162 s~n~~~~~~~p~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~--~l~~L~~L~Ls~n~l~~~~~~~~---------------  224 (732)
                      ++| .+.+..|..++++ ++|++|++++|.+++..+..+.  .+++|++|++++|.+++..+..+               
T Consensus       129 s~n-~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~  206 (680)
T 1ziw_A          129 SHN-GLSSTKLGTQVQL-ENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQ  206 (680)
T ss_dssp             CSS-CCSCCCCCSSSCC-TTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCC
T ss_pred             CCC-cccccCchhhccc-ccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccc
Confidence            999 5677778888888 8999999999999877766554  56899999999999987766532               


Q ss_pred             ---------------ccccEEECCCCcCccccCchhhcccc--cCeeeCCCCccccccchhhhccCCCCEEEeccCCCCC
Q 004747          225 ---------------QSLLVLNLGSNRFSGTLPCFAASAMS--LTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNY  287 (732)
Q Consensus       225 ---------------~~L~~L~L~~n~l~~~~~~~~~~~~~--L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~  287 (732)
                                     .+|+.|++++|.+++..|..+..++.  |++|++++|.+.+..|..++.+++|++|++++|.+++
T Consensus       207 l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  286 (680)
T 1ziw_A          207 LGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQH  286 (680)
T ss_dssp             CHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSE
T ss_pred             cChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCc
Confidence                           34889999999999999999988865  9999999999998888899999999999999999999


Q ss_pred             cCccccccCcCCcEEEccCCCCCCC-----Cch----hhhhcCCCCCccEEeCCCCcccCCCcccccCCCCCCEEeccCc
Q 004747          288 EISPRLVFFEKLLLLDLSFNDLSGP-----LPS----KIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNN  358 (732)
Q Consensus       288 ~~~~~l~~l~~L~~L~Ls~n~l~~~-----~p~----~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n  358 (732)
                      ..|..+..+++|++|++++|...+.     +|.    .+..+   ++|++|++++|.+++..+..+..+++|++|++++|
T Consensus       287 ~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n  363 (680)
T 1ziw_A          287 LFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWL---KCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNS  363 (680)
T ss_dssp             ECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTC---TTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTC
T ss_pred             cChhhhcCCCCccEEeccchhhhcccccccccccChhhcccC---CCCCEEECCCCccCCCChhHhccccCCcEEECCCC
Confidence            9999999999999999998866542     222    33344   48999999999999888888999999999999999


Q ss_pred             cCCCcc-c-cccCC--CCCCCEEEccCCcCccccCccccCCcCcceeecccccccccCc-ccccCCCCCcEEEcccCcee
Q 004747          359 LLIGEI-P-ARIGN--LTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQ-PELDALDSLKILDISNNQIS  433 (732)
Q Consensus       359 ~l~~~~-p-~~l~~--l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~  433 (732)
                      .+.... + ..+..  .++|+.|++++|++++..|..+..+++|+.|++++|.+.+.++ ..+..+++|++|++++|++.
T Consensus       364 ~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~  443 (680)
T 1ziw_A          364 FTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYL  443 (680)
T ss_dssp             BSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEE
T ss_pred             chhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcc
Confidence            865432 2 22322  3689999999999999999999999999999999999998665 67899999999999999999


Q ss_pred             eeccccCCCCCCCCEEEccCCccc--ccchhhhhcCCCCCEEEcccCCCccccchhhhcCCCCCEEEccCCcCcccCCcc
Q 004747          434 GEIPLTLAGLKSLEIVDFSSNNLS--GSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDG  511 (732)
Q Consensus       434 ~~~p~~~~~l~~L~~L~Ls~N~l~--~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~ls~N~l~~~~p~~  511 (732)
                      +..+..+..+++|++|++++|.+.  +.+|..+..+++|++|++++|++++..+..+..+++|++|++++|++++..+..
T Consensus       444 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  523 (680)
T 1ziw_A          444 QLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHA  523 (680)
T ss_dssp             ECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTT
T ss_pred             eeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhh
Confidence            888899999999999999999987  567889999999999999999999887888999999999999999997643221


Q ss_pred             cccCccccCcCCCCCCCCCCcccCCCceeEEeEEEeecCCchhhhhhcccceEEEccCCcccccCCc-ccccccCCceee
Q 004747          512 NFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGTIPK-GLFQLQGLEYLN  590 (732)
Q Consensus       512 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~-~l~~l~~L~~L~  590 (732)
                      . ..                                   ........+++|+.|+|++|+++ .+|. .+.++++|++|+
T Consensus       524 ~-~~-----------------------------------~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~  566 (680)
T 1ziw_A          524 N-PG-----------------------------------GPIYFLKGLSHLHILNLESNGFD-EIPVEVFKDLFELKIID  566 (680)
T ss_dssp             S-TT-----------------------------------SCCCTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEE
T ss_pred             c-cC-----------------------------------CcchhhcCCCCCCEEECCCCCCC-CCCHHHcccccCcceeE
Confidence            1 00                                   00011234788999999999999 5665 588999999999


Q ss_pred             cccccceecCCc-ccCccCCcEEeCCCCcCcccCCcCCC-CCCCCCEEEcccCcceeeCC
Q 004747          591 LSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIPGNIS-SLQELTLLNLSYNSFSGFVP  648 (732)
Q Consensus       591 Ls~N~l~~~ip~-l~~l~~L~~LdLs~N~l~~~ip~~l~-~l~~L~~L~ls~N~l~g~ip  648 (732)
                      |++|++++..+. +..+++|+.|+|++|++++..|..+. .+++|+.+++++|++.+..+
T Consensus       567 Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~  626 (680)
T 1ziw_A          567 LGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE  626 (680)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred             CCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCc
Confidence            999999976666 77899999999999999998888777 78999999999999988655

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=5.4e-55  Score=516.90  Aligned_cols=546  Identities=21%  Similarity=0.149  Sum_probs=400.3

Q ss_pred             CCccceeecCCCCcEEEEEcCCCCCcccccccccCCCCCCEEECCCCCCCCcc-cccccCCCCCCEEECCCCCCCCCCCc
Q 004747           70 TNWTGVACNFQTGHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRI-STCFGGLSGLKTLDLSYNKFVGVVPD  148 (732)
Q Consensus        70 c~w~gv~c~~~~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~p~  148 (732)
                      +.|..|.+  ...+++.|+|++|.+++..+.++.++++|++|+|++|...+.+ |..|.++++|++|+|++|.+.+..|.
T Consensus        14 ~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~   91 (844)
T 3j0a_A           14 CNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPD   91 (844)
T ss_dssp             CCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTT
T ss_pred             CCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHh
Confidence            45666666  4568899999999998888888999999999999998766665 77889999999999999999988899


Q ss_pred             cccCCCCCCEEeCCCCCCCCCcCCch--hhhcccCCcEEEeeCcccccccC-cccCCCCCCCEEEeecccCCCcccccc-
Q 004747          149 AIMKLRNLRELILKGNPELGGVFPGW--VGNFSMNLEKLDFSFNSFCGEIP-ESLYYLKSLKHLDLEKNNLTGNVHDFY-  224 (732)
Q Consensus       149 ~~~~l~~L~~L~Ls~n~~~~~~~p~~--~~~l~~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~Ls~n~l~~~~~~~~-  224 (732)
                      .|+++++|++|+|++| .+.+.+|..  +.++ ++|++|++++|.+++..+ ..|+++++|++|++++|.+++..+..+ 
T Consensus        92 ~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~L-~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~  169 (844)
T 3j0a_A           92 AFQGLFHLFELRLYFC-GLSDAVLKDGYFRNL-KALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELE  169 (844)
T ss_dssp             SSCSCSSCCCEECTTC-CCSSCCSTTCCCSSC-SSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGH
T ss_pred             HccCCcccCEeeCcCC-CCCcccccCcccccc-CCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcc
Confidence            9999999999999999 556655544  7777 899999999999887654 578899999999999999888776654 


Q ss_pred             ----ccccEEECCCCcCccccCchhhcccc------cCeeeCCCCccccccchhhhcc---CCCCEEEeccCCC------
Q 004747          225 ----QSLLVLNLGSNRFSGTLPCFAASAMS------LTVLKLDNNSVVGGIPTCIASL---QALTHLNLSHNHL------  285 (732)
Q Consensus       225 ----~~L~~L~L~~n~l~~~~~~~~~~~~~------L~~L~Ls~n~l~~~~~~~l~~l---~~L~~L~L~~n~l------  285 (732)
                          .+|+.|++++|.+.+..|..+..+.+      |++|++++|.+.+..+..+...   ..++.+.++.+..      
T Consensus       170 ~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~  249 (844)
T 3j0a_A          170 PLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGF  249 (844)
T ss_dssp             HHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSC
T ss_pred             cccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccc
Confidence                45888888888888877776666655      8888888888887777666543   5677777763322      


Q ss_pred             ---CCcCccccccC--cCCcEEEccCCCCCCCCchhhhhcCCCCCccEEeCCCCcccCCCcccccCCCCCCEEeccCccC
Q 004747          286 ---NYEISPRLVFF--EKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLL  360 (732)
Q Consensus       286 ---~~~~~~~l~~l--~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l  360 (732)
                         .......+..+  ++|+.|++++|.+.+..|..+..+.   +|+.|++++|++++..|..+..+++|++|++++|.+
T Consensus       250 ~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~---~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l  326 (844)
T 3j0a_A          250 HNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLK---DLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLL  326 (844)
T ss_dssp             SSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCC---CCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCC
T ss_pred             cccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCC---CCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCC
Confidence               22222333333  5788888888887766666665555   788888888888777777777888888888888888


Q ss_pred             CCccccccCCCCCCCEEEccCCcCccccCccccCCcCcceeecccccccccCcccccCCCCCcEEEcccCceeeeccccC
Q 004747          361 IGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTL  440 (732)
Q Consensus       361 ~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~  440 (732)
                      ++..|..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++.     ..+++|+.|++++|+++ .+|.. 
T Consensus       327 ~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~-~l~~~-  399 (844)
T 3j0a_A          327 GELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSGNKLV-TLPKI-  399 (844)
T ss_dssp             SCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEESCCCC-CCCCC-
T ss_pred             CccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-----cCCCCcchhccCCCCcc-ccccc-
Confidence            777777788888888888888888766666777788888888888877643     23677888888888877 44432 


Q ss_pred             CCCCCCCEEEccCCcccccc-hhhhhcCCCCCEEEcccCCCccccch-hhhcCCCCCEEEccCCcCcccCCcccccCccc
Q 004747          441 AGLKSLEIVDFSSNNLSGSL-NDAITKWTNLKYFSIARNKLSGNLPN-WLFSFQAIQMMDFSTNKFMGFIPDGNFNFSLN  518 (732)
Q Consensus       441 ~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~p~-~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~  518 (732)
                        ..+++.|++++|++++.. +..+..+++|++|++++|++++..+. .+..+++|+.|++++|.+++..+.....    
T Consensus       400 --~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~----  473 (844)
T 3j0a_A          400 --NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCW----  473 (844)
T ss_dssp             --CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCS----
T ss_pred             --ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccch----
Confidence              456778888888877532 23455778888888888887754432 3455777888888888776432221100    


Q ss_pred             cCcCCCCCCCCCCcccCCCceeEEeEEEeecCCchhhhhhcccceEEEccCCcccccCCcccccccCCceeeccccccee
Q 004747          519 FNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDG  598 (732)
Q Consensus       519 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~  598 (732)
                                                         ..+..+++|+.|||++|++++..|..+..+++|++|+|++|++++
T Consensus       474 -----------------------------------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  518 (844)
T 3j0a_A          474 -----------------------------------DVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTV  518 (844)
T ss_dssp             -----------------------------------SCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSS
T ss_pred             -----------------------------------hhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCc
Confidence                                               011226778888888888887777778888888888888888886


Q ss_pred             cCCcccCccCCcEEeCCCCcCcccCCcCCCCCCCCCEEEcccCcceeeCCCCCCCCCcCc-cccCCCCCCCCCCCCCCCC
Q 004747          599 QVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVPWKQGYQKFPG-AFAGNPNLCLESSHGECNR  677 (732)
Q Consensus       599 ~ip~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~-~~~gn~~lcg~~~~~~c~~  677 (732)
                      .+|.... ++|+.|||++|++++.+|..|.   +|+.|++++|++.+..+.    ..|.. ...++..+||.+....|..
T Consensus       519 l~~~~~~-~~L~~L~Ls~N~l~~~~~~~~~---~L~~l~l~~Np~~C~c~~----~~f~~~~~~~~~~~~~~~~~~~C~~  590 (844)
T 3j0a_A          519 LSHNDLP-ANLEILDISRNQLLAPNPDVFV---SLSVLDITHNKFICECEL----STFINWLNHTNVTIAGPPADIYCVY  590 (844)
T ss_dssp             CCCCCCC-SCCCEEEEEEECCCCCCSCCCS---SCCEEEEEEECCCCSSSC----CSHHHHHHHTTTTTCCCGGGCCCSS
T ss_pred             cChhhhh-ccccEEECCCCcCCCCChhHhC---CcCEEEecCCCccccccc----HHHHHHHHhcCcccccccccCccCC
Confidence            6655222 7888888888888888887654   678888888888776542    12222 2344556667666667765


Q ss_pred             C
Q 004747          678 T  678 (732)
Q Consensus       678 ~  678 (732)
                      +
T Consensus       591 p  591 (844)
T 3j0a_A          591 P  591 (844)
T ss_dssp             C
T ss_pred             c
Confidence            4

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=4.3e-55  Score=501.00  Aligned_cols=508  Identities=21%  Similarity=0.218  Sum_probs=419.2

Q ss_pred             CCcEEEEEcCCCCCcccccccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEECCCCCCCCCCCccccCCCCCCEEe
Q 004747           81 TGHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELI  160 (732)
Q Consensus        81 ~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~  160 (732)
                      ..++++|+++++.+++..+..+.++++|++|++++|.+++..|..|+++++|++|+|++|.+++..|.+|+++++|++|+
T Consensus        31 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~  110 (606)
T 3vq2_A           31 PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV  110 (606)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEE
T ss_pred             CCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEE
Confidence            35789999999999888788899999999999999999988888899999999999999999988899999999999999


Q ss_pred             CCCCCCCCCcCCchhhhcccCCcEEEeeCccccc-ccCcccCCCCCCCEEEeecccCCCcccccccc-------ccEEEC
Q 004747          161 LKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCG-EIPESLYYLKSLKHLDLEKNNLTGNVHDFYQS-------LLVLNL  232 (732)
Q Consensus       161 Ls~n~~~~~~~p~~~~~l~~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~-------L~~L~L  232 (732)
                      +++| .+.+..+..++++ ++|++|++++|.+++ .+|..++++++|++|++++|.+++..+..+..       +++|++
T Consensus       111 L~~n-~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l  188 (606)
T 3vq2_A          111 AVET-KLASLESFPIGQL-ITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDM  188 (606)
T ss_dssp             CTTS-CCCCSSSSCCTTC-TTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEEC
T ss_pred             ccCC-ccccccccccCCC-CCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeec
Confidence            9999 5566666778888 899999999999986 56889999999999999999999887775543       348999


Q ss_pred             CCCcCccccCchhhcccccCeeeCCCCccc-cccchhhhccCCCCEEEeccCCCCCc------CccccccCc--CCcEEE
Q 004747          233 GSNRFSGTLPCFAASAMSLTVLKLDNNSVV-GGIPTCIASLQALTHLNLSHNHLNYE------ISPRLVFFE--KLLLLD  303 (732)
Q Consensus       233 ~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~------~~~~l~~l~--~L~~L~  303 (732)
                      ++|.+++..+..+... +|++|++++|.+. +..|..+++++.|+.+++..+.+.+.      .+..+..+.  .++.++
T Consensus       189 ~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~  267 (606)
T 3vq2_A          189 SLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFR  267 (606)
T ss_dssp             TTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEE
T ss_pred             cCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhhee
Confidence            9999986666555544 8999999999886 45677888899999888865544321      111222222  466677


Q ss_pred             c-cCCCCCCCCchhhhhcCCCCCccEEeCCCCcccCCCcccccCCCCCCEEeccCccCCCccccccCCCCCCCEEEccCC
Q 004747          304 L-SFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHN  382 (732)
Q Consensus       304 L-s~n~l~~~~p~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n  382 (732)
                      + ..|.+.+.+|. +..+.   +|+.|++++|.+. .+| .+..+++|++|++++|.+ +.+| .+ .+++|++|++++|
T Consensus       268 l~~~~~~~~~~~~-~~~l~---~L~~L~l~~~~~~-~l~-~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n  338 (606)
T 3vq2_A          268 LTYTNDFSDDIVK-FHCLA---NVSAMSLAGVSIK-YLE-DVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMN  338 (606)
T ss_dssp             ECCCTTCCGGGGS-CGGGT---TCSEEEEESCCCC-CCC-CCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESC
T ss_pred             ccccccccccccc-cccCC---CCCEEEecCccch-hhh-hccccccCCEEEcccccC-cccc-cC-CCCccceeeccCC
Confidence            7 67778777765 55555   8999999999987 566 788889999999999999 5777 45 8999999999999


Q ss_pred             cCccccCccccCCcCcceeeccccccccc--CcccccCCCCCcEEEcccCceeeeccccCCCCCCCCEEEccCCcccccc
Q 004747          383 MLSGSIPLNIVGCFQLLALIVNNNNLSGE--IQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSL  460 (732)
Q Consensus       383 ~l~~~~p~~~~~~~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~  460 (732)
                      ...+.+  .+..+++|+.|++++|.+++.  .+..+..+++|++|++++|.+++ +|..+..+++|++|++++|++.+..
T Consensus       339 ~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~  415 (606)
T 3vq2_A          339 KGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVT  415 (606)
T ss_dssp             SSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTT
T ss_pred             cCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCcc
Confidence            665544  566888999999999998876  37778889999999999999885 5678889999999999999998877


Q ss_pred             h-hhhhcCCCCCEEEcccCCCccccchhhhcCCCCCEEEccCCcCccc-CCcccccCccccCcCCCCCCCCCCcccCCCc
Q 004747          461 N-DAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGF-IPDGNFNFSLNFNKSDIGRSMPAKSFVLPRS  538 (732)
Q Consensus       461 ~-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~ls~N~l~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  538 (732)
                      + ..+..+++|++|++++|++.+..|..+..+++|++|++++|++++. +|.. |.                        
T Consensus       416 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~------------------------  470 (606)
T 3vq2_A          416 EFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNV-FA------------------------  470 (606)
T ss_dssp             TTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSC-CT------------------------
T ss_pred             ChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHh-hc------------------------
Confidence            7 6788899999999999999988888899999999999999998874 3432 22                        


Q ss_pred             eeEEeEEEeecCCchhhhhhcccceEEEccCCcccccCCcccccccCCceeecccccceecCCc-ccCccCCcEEeCCCC
Q 004747          539 MVIRISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHN  617 (732)
Q Consensus       539 ~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~-l~~l~~L~~LdLs~N  617 (732)
                                         .+++|+.|++++|++++..|..+.++++|++|+|++|++++.+|. +.++++|++|||++|
T Consensus       471 -------------------~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N  531 (606)
T 3vq2_A          471 -------------------NTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFN  531 (606)
T ss_dssp             -------------------TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTS
T ss_pred             -------------------cCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCC
Confidence                               267889999999999988888899999999999999999988787 888999999999999


Q ss_pred             cCcccCCcCCCCCC-CCCEEEcccCcceeeCC
Q 004747          618 SLTGQIPGNISSLQ-ELTLLNLSYNSFSGFVP  648 (732)
Q Consensus       618 ~l~~~ip~~l~~l~-~L~~L~ls~N~l~g~ip  648 (732)
                      +++ .+|..+..++ +|++|++++|++.+..+
T Consensus       532 ~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~  562 (606)
T 3vq2_A          532 RIE-TSKGILQHFPKSLAFFNLTNNSVACICE  562 (606)
T ss_dssp             CCC-CEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred             cCc-ccCHhHhhhcccCcEEEccCCCcccCCc
Confidence            998 6677788886 59999999999987655

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=3.2e-54  Score=493.76  Aligned_cols=526  Identities=21%  Similarity=0.200  Sum_probs=445.3

Q ss_pred             EEcCCCCCcccccccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEECCCCCCCCCCCccccCCCCCCEEeCCCCCC
Q 004747           87 INLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPE  166 (732)
Q Consensus        87 L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~  166 (732)
                      ++.++.+++ .+|..+..  .+++|++++|.+++..|..|+++++|++|+|++|.+.+..|.+|+++++|++|+|++| .
T Consensus        17 ~~c~~~~l~-~iP~~l~~--~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~   92 (606)
T 3t6q_A           17 YNCENLGLN-EIPGTLPN--STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN-P   92 (606)
T ss_dssp             EECTTSCCS-SCCTTSCT--TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC-C
T ss_pred             EECCCCCcc-cCcCCCCC--cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCC-c
Confidence            344444554 45555543  7899999999999888999999999999999999999999999999999999999999 6


Q ss_pred             CCCcCCchhhhcccCCcEEEeeCcccccccCcccCCCCCCCEEEeecccCCCcc-ccc--cccccEEECCCCcCccccCc
Q 004747          167 LGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNV-HDF--YQSLLVLNLGSNRFSGTLPC  243 (732)
Q Consensus       167 ~~~~~p~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~-~~~--~~~L~~L~L~~n~l~~~~~~  243 (732)
                      +.+..|..++.+ ++|++|++++|.+++..|..++++++|++|++++|.+++.. +..  +.+|++|++++|.+++..+.
T Consensus        93 l~~~~~~~~~~l-~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  171 (606)
T 3t6q_A           93 LIFMAETALSGP-KALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKE  171 (606)
T ss_dssp             CSEECTTTTSSC-TTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHH
T ss_pred             ccccChhhhccc-ccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChh
Confidence            777888889998 99999999999999877888999999999999999998853 332  45699999999999988888


Q ss_pred             hhhcccccC--eeeCCCCccccccchhhhccCCCCEEEeccCCCCCcCccccccCcCCcEEEccCCCCCC-----CCchh
Q 004747          244 FAASAMSLT--VLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSG-----PLPSK  316 (732)
Q Consensus       244 ~~~~~~~L~--~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~-----~~p~~  316 (732)
                      .++.+++|+  +|++++|.+.+..|..+.. .+|++|++++|.   .++..+..+.+++...+....+.+     ..+..
T Consensus       172 ~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~~~---~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~  247 (606)
T 3t6q_A          172 DMSSLQQATNLSLNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQ---NLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAV  247 (606)
T ss_dssp             HHHTTTTCCSEEEECTTCCCCEECTTTTTT-CEEEEEECTTCS---CHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGG
T ss_pred             hhhhhcccceeEEecCCCccCccChhHhhh-ccccccccCCch---hHHHHhhhccccchhheechhhccccccccChhH
Confidence            899999999  8999999999877776544 689999999886   344555556555544443332221     11223


Q ss_pred             hhhcCCCCCccEEeCCCCcccCCCcccccCCCCCCEEeccCccCCCccccccCCCCCCCEEEccCCcCccccCccccCCc
Q 004747          317 IAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCF  396 (732)
Q Consensus       317 ~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~  396 (732)
                      +..+... +|+.|++++|.+++..+..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+.+..|..+..++
T Consensus       248 ~~~l~~~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~  325 (606)
T 3t6q_A          248 FEGLCEM-SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFP  325 (606)
T ss_dssp             GGGGGGS-EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCT
T ss_pred             hchhhcC-ceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccC
Confidence            3333222 6999999999999877888999999999999999998 7888999999999999999999988888999999


Q ss_pred             CcceeecccccccccCcc-cccCCCCCcEEEcccCceeeec--cccCCCCCCCCEEEccCCcccccchhhhhcCCCCCEE
Q 004747          397 QLLALIVNNNNLSGEIQP-ELDALDSLKILDISNNQISGEI--PLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYF  473 (732)
Q Consensus       397 ~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~--p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  473 (732)
                      +|+.|++++|.+.+.++. .+..+++|++|++++|.+++..  +..+..+++|++|++++|++.+..|..+..+++|++|
T Consensus       326 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  405 (606)
T 3t6q_A          326 SLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELL  405 (606)
T ss_dssp             TCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEE
T ss_pred             cCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeE
Confidence            999999999999877665 4889999999999999999776  7789999999999999999998889999999999999


Q ss_pred             EcccCCCccccch-hhhcCCCCCEEEccCCcCcccCCcccccCccccCcCCCCCCCCCCcccCCCceeEEeEEEeecCCc
Q 004747          474 SIARNKLSGNLPN-WLFSFQAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNE  552 (732)
Q Consensus       474 ~L~~N~l~~~~p~-~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  552 (732)
                      ++++|++.+..|. .+..+++|++|++++|.+.+..|..+ .                                      
T Consensus       406 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~--------------------------------------  446 (606)
T 3t6q_A          406 DLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLF-D--------------------------------------  446 (606)
T ss_dssp             ECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTT-T--------------------------------------
T ss_pred             ECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHH-h--------------------------------------
Confidence            9999999977665 48899999999999999987665432 1                                      


Q ss_pred             hhhhhhcccceEEEccCCccccc---CCcccccccCCceeecccccceecCCc-ccCccCCcEEeCCCCcCcccCCcCCC
Q 004747          553 LSFNYQLFSAVGMDLSDNLLHGT---IPKGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIPGNIS  628 (732)
Q Consensus       553 ~~~~~~l~~L~~LdLs~N~l~g~---ip~~l~~l~~L~~L~Ls~N~l~~~ip~-l~~l~~L~~LdLs~N~l~~~ip~~l~  628 (732)
                           .+++|++|++++|++++.   .+..+..+++|++|++++|++++.+|. +..+++|+.|||++|++++.+|..+.
T Consensus       447 -----~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~  521 (606)
T 3t6q_A          447 -----GLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALS  521 (606)
T ss_dssp             -----TCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGT
T ss_pred             -----CCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhC
Confidence                 277899999999999873   336688999999999999999998888 89999999999999999999999999


Q ss_pred             CCCCCCEEEcccCcceeeCCCC-CCCCCcCc-cccCCCCCCC
Q 004747          629 SLQELTLLNLSYNSFSGFVPWK-QGYQKFPG-AFAGNPNLCL  668 (732)
Q Consensus       629 ~l~~L~~L~ls~N~l~g~ip~~-~~~~~~~~-~~~gn~~lcg  668 (732)
                      .++.| +||+++|++++.+|.. ..+..+.. .+.|||..|.
T Consensus       522 ~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  562 (606)
T 3t6q_A          522 HLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCT  562 (606)
T ss_dssp             TCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECS
T ss_pred             ccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCcccc
Confidence            99999 9999999999887753 22233444 7899998874

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=5e-56  Score=508.59  Aligned_cols=501  Identities=18%  Similarity=0.225  Sum_probs=297.3

Q ss_pred             CHHhHHHHHHHHhcCCCCCC--------CCCCC-CCCCCCCc---cceeecCCCCcEEEEEcCCCCCcccccccccCCCC
Q 004747           40 NLEDKASLLLFKSLVQDPTQ--------KLSSW-VGSNCTNW---TGVACNFQTGHVVSINLTDTSLSGQVHPRLCKLSF  107 (732)
Q Consensus        40 ~~~~~~~l~~~k~~~~~~~~--------~l~~w-~~~~~c~w---~gv~c~~~~~~v~~L~L~~~~l~~~~~~~l~~l~~  107 (732)
                      ...|++||.+++.++.++..        ..++| .+.+||.|   .||+|+. .++|++|+|+++++.|.+|++++++++
T Consensus        28 ~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~-~~~V~~L~L~~~~l~g~lp~~l~~L~~  106 (636)
T 4eco_A           28 YIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNS-NGRVTGLSLEGFGASGRVPDAIGQLTE  106 (636)
T ss_dssp             HHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGGGTTCCTTEEECT-TCCEEEEECTTSCCEEEECGGGGGCTT
T ss_pred             HHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCcccccCCCCeEEcC-CCCEEEEEecCcccCCcCChHHhcCcc
Confidence            35788899999999876521        23489 67899999   9999984 489999999999999999999999999


Q ss_pred             CCEEECCCCCC------CC------cccccccCCCCCCEEECCCCCCCCCCCccccC-CCCCCEEeCCCCCCCCCcCCch
Q 004747          108 LEFLVLSSNAF------TG------RISTCFGGLSGLKTLDLSYNKFVGVVPDAIMK-LRNLRELILKGNPELGGVFPGW  174 (732)
Q Consensus       108 L~~L~Ls~n~l------~~------~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~-l~~L~~L~Ls~n~~~~~~~p~~  174 (732)
                      |++|+|++|.+      .+      .+|...  +..|+ +++++|.+.+.+|..+.. +..+..+++...+...      
T Consensus       107 L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~------  177 (636)
T 4eco_A          107 LEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKK------  177 (636)
T ss_dssp             CCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCC------
T ss_pred             ceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhhHHHHHHHHhhcCcccccccc------
Confidence            99999999976      22      233332  45566 777778887777766652 2222223332211000      


Q ss_pred             hhhcccCCcEEEe--eCcccccccCcccCCCCCCCEEEeecccCCCc-----------------cccccc-----cccEE
Q 004747          175 VGNFSMNLEKLDF--SFNSFCGEIPESLYYLKSLKHLDLEKNNLTGN-----------------VHDFYQ-----SLLVL  230 (732)
Q Consensus       175 ~~~l~~~L~~L~L--s~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-----------------~~~~~~-----~L~~L  230 (732)
                       ... ..++.+.+  ..|.+++ +|..++++++|++|+|++|.+++.                 +|..+.     +|++|
T Consensus       178 -~~~-~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L  254 (636)
T 4eco_A          178 -SSR-ITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDV  254 (636)
T ss_dssp             -CCC-CCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEE
T ss_pred             -ccc-cchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEE
Confidence             000 12222222  2466776 777777777777777777777773                 333222     25555


Q ss_pred             ECCCCcCccccCchhhcccccCeeeCCCCc-ccc-ccchhhhcc------CCCCEEEeccCCCCCcCcc--ccccCcCCc
Q 004747          231 NLGSNRFSGTLPCFAASAMSLTVLKLDNNS-VVG-GIPTCIASL------QALTHLNLSHNHLNYEISP--RLVFFEKLL  300 (732)
Q Consensus       231 ~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~-l~~-~~~~~l~~l------~~L~~L~L~~n~l~~~~~~--~l~~l~~L~  300 (732)
                      ++++|.+.+.+|..++++++|++|++++|+ +++ .+|..++.+      ++|++|++++|+++ .+|.  .+..+++|+
T Consensus       255 ~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~  333 (636)
T 4eco_A          255 EVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLG  333 (636)
T ss_dssp             EEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCC
T ss_pred             EecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCC
Confidence            555555555666666666666666666666 665 566666555      66666666666666 5555  566666666


Q ss_pred             EEEccCCCCCCCCchhhhhcCCCCCccEEeCCCCcccCCCcccccCCCC-CCEEeccCccCCCccccccCCCC--CCCEE
Q 004747          301 LLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKS-LQALFLSNNLLIGEIPARIGNLT--YLQVI  377 (732)
Q Consensus       301 ~L~Ls~n~l~~~~p~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~-L~~L~Ls~n~l~~~~p~~l~~l~--~L~~L  377 (732)
                      +|++++|.++|.+| .+..+.   +|++|++++|.++ .+|..+..+++ |++|++++|.++ .+|..+..++  +|++|
T Consensus       334 ~L~L~~N~l~g~ip-~~~~l~---~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L  407 (636)
T 4eco_A          334 MLECLYNQLEGKLP-AFGSEI---KLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAI  407 (636)
T ss_dssp             EEECCSCCCEEECC-CCEEEE---EESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEE
T ss_pred             EEeCcCCcCccchh-hhCCCC---CCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEE
Confidence            66666666666666 444444   5666666666666 56666666666 666666666666 5555555443  56666


Q ss_pred             EccCCcCccccCccccCCcCcceeecccccccccCcccccCCCCCcEEEcccCceeeeccccCCCCCCCCEEEccCCccc
Q 004747          378 DLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLS  457 (732)
Q Consensus       378 ~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~  457 (732)
                      ++++|.+++.+|..+..+.                 .....+++|++|++++|.+++..+..+..+++|++|++++|+++
T Consensus       408 ~Ls~N~l~~~~p~~l~~~~-----------------~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~  470 (636)
T 4eco_A          408 DFSYNEIGSVDGKNFDPLD-----------------PTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT  470 (636)
T ss_dssp             ECCSSCTTTTTTCSSCTTC-----------------SSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS
T ss_pred             ECcCCcCCCcchhhhcccc-----------------cccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC
Confidence            6666666665555544000                 00003445555555555555222222334555555555555555


Q ss_pred             ccchhh-hhc-------CCCCCEEEcccCCCccccchhhh--cCCCCCEEEccCCcCcccCCcccccCccccCcCCCCCC
Q 004747          458 GSLNDA-ITK-------WTNLKYFSIARNKLSGNLPNWLF--SFQAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRS  527 (732)
Q Consensus       458 ~~~~~~-~~~-------l~~L~~L~L~~N~l~~~~p~~~~--~~~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~  527 (732)
                       .+|.. +..       +++|++|++++|+++ .+|..+.  .+++|+.|++++|++++ +|..++              
T Consensus       471 -~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~--------------  533 (636)
T 4eco_A          471 -EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPL--------------  533 (636)
T ss_dssp             -BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGG--------------
T ss_pred             -CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhh--------------
Confidence             23222 221       226666666666666 5565554  56666666666666654 443321              


Q ss_pred             CCCCcccCCCceeEEeEEEeecCCchhhhhhcccceEEEccCCcccccCCcccccccCCceeecccccceecCCc-ccCc
Q 004747          528 MPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG-LYRL  606 (732)
Q Consensus       528 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~-l~~l  606 (732)
                                                    .+++|+.|+|++|+                  ++++|++.+.+|. +.++
T Consensus       534 ------------------------------~l~~L~~L~Ls~N~------------------~ls~N~l~~~~p~~l~~l  565 (636)
T 4eco_A          534 ------------------------------NSSTLKGFGIRNQR------------------DAQGNRTLREWPEGITLC  565 (636)
T ss_dssp             ------------------------------GCSSCCEEECCSCB------------------CTTCCBCCCCCCTTGGGC
T ss_pred             ------------------------------cCCCCCEEECCCCc------------------ccccCcccccChHHHhcC
Confidence                                          14455555554443                  3345555555554 5555


Q ss_pred             cCCcEEeCCCCcCcccCCcCCCCCCCCCEEEcccCccee
Q 004747          607 RSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSG  645 (732)
Q Consensus       607 ~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g  645 (732)
                      ++|++|||++|++ +.+|..+.  ++|++||+++|++..
T Consensus       566 ~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~  601 (636)
T 4eco_A          566 PSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNIS  601 (636)
T ss_dssp             SSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTCE
T ss_pred             CCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCcc
Confidence            5666666666666 35555444  566666666665553

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=1.6e-53  Score=487.99  Aligned_cols=524  Identities=20%  Similarity=0.184  Sum_probs=445.6

Q ss_pred             EEEcCCCCCcccccccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEECCCCCCCCCCCccccCCCCCCEEeCCCCC
Q 004747           86 SINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNP  165 (732)
Q Consensus        86 ~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~  165 (732)
                      .++.++.+++ .+|..+.  +++++|++++|.+++..+..|.++++|++|++++|.+++..|.+|+++++|++|+|++| 
T Consensus        15 ~~~c~~~~l~-~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n-   90 (606)
T 3vq2_A           15 TYQCMDQKLS-KVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN-   90 (606)
T ss_dssp             EEECTTSCCS-SCCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-
T ss_pred             ceEccCCCcc-cCCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCC-
Confidence            3556666665 4555554  79999999999999888889999999999999999999988999999999999999999 


Q ss_pred             CCCCcCCchhhhcccCCcEEEeeCcccccccCcccCCCCCCCEEEeecccCCC-cccccc---ccccEEECCCCcCcccc
Q 004747          166 ELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTG-NVHDFY---QSLLVLNLGSNRFSGTL  241 (732)
Q Consensus       166 ~~~~~~p~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-~~~~~~---~~L~~L~L~~n~l~~~~  241 (732)
                      .+.+..|..++++ ++|++|++++|.+++..+..++++++|++|++++|.+++ .+|..+   .+|++|++++|.+++..
T Consensus        91 ~l~~~~p~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~  169 (606)
T 3vq2_A           91 PIQSFSPGSFSGL-TSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTIT  169 (606)
T ss_dssp             CCCCCCTTSSTTC-TTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEEC
T ss_pred             cccccChhhcCCc-ccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecC
Confidence            5777889999999 999999999999998877889999999999999999986 446644   56999999999999988


Q ss_pred             CchhhcccccC----eeeCCCCccccccchhhhccCCCCEEEeccCCCC-CcCccccccCcCCcEEEccCCCCCC-----
Q 004747          242 PCFAASAMSLT----VLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLN-YEISPRLVFFEKLLLLDLSFNDLSG-----  311 (732)
Q Consensus       242 ~~~~~~~~~L~----~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~Ls~n~l~~-----  311 (732)
                      +..+..+++|+    +|++++|.+++..+..+... +|++|++++|.++ +..|..+..++.|+.+++..+.+.+     
T Consensus       170 ~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~  248 (606)
T 3vq2_A          170 VNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLE  248 (606)
T ss_dssp             TTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCS
T ss_pred             hhhhhhhhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCccc
Confidence            88888887776    79999999997666655544 8999999999987 4567788999999999887654432     


Q ss_pred             -CCchhhhhcCCCCCccEEeC-CCCcccCCCcccccCCCCCCEEeccCccCCCccccccCCCCCCCEEEccCCcCccccC
Q 004747          312 -PLPSKIAQTTEKAGLVLLDL-SHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIP  389 (732)
Q Consensus       312 -~~p~~~~~l~~~~~L~~L~L-s~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p  389 (732)
                       ..+..+..+... .++.+++ ..+.+.+.+|. +..+++|+.|++++|.+. .+| .+..+++|+.|++++|.+ +.+|
T Consensus       249 ~~~~~~~~~l~~l-~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~-~l~-~l~~~~~L~~L~l~~n~l-~~lp  323 (606)
T 3vq2_A          249 IFEPSIMEGLCDV-TIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIK-YLE-DVPKHFKWQSLSIIRCQL-KQFP  323 (606)
T ss_dssp             CCCGGGGTTGGGS-EEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCC-CCC-CCCTTCCCSEEEEESCCC-SSCC
T ss_pred             ccChHHhhhhhhc-cHhheeccccccccccccc-cccCCCCCEEEecCccch-hhh-hccccccCCEEEcccccC-cccc
Confidence             112222233322 5778888 77888888887 899999999999999997 566 789999999999999999 6888


Q ss_pred             ccccCCcCcceeecccccccccCcccccCCCCCcEEEcccCceeee--ccccCCCCCCCCEEEccCCcccccchhhhhcC
Q 004747          390 LNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGE--IPLTLAGLKSLEIVDFSSNNLSGSLNDAITKW  467 (732)
Q Consensus       390 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l  467 (732)
                       .+ .+++|+.|++++|...+..  .+..+++|++|++++|.+++.  +|..+..+++|++|++++|.+++ +|..+..+
T Consensus       324 -~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l  398 (606)
T 3vq2_A          324 -TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGL  398 (606)
T ss_dssp             -CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTC
T ss_pred             -cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCC
Confidence             45 9999999999999766544  567899999999999999976  37788999999999999999985 56788999


Q ss_pred             CCCCEEEcccCCCccccc-hhhhcCCCCCEEEccCCcCcccCCcccccCccccCcCCCCCCCCCCcccCCCceeEEeEEE
Q 004747          468 TNLKYFSIARNKLSGNLP-NWLFSFQAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVT  546 (732)
Q Consensus       468 ~~L~~L~L~~N~l~~~~p-~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  546 (732)
                      ++|++|++++|++.+..| ..+..+++|++|++++|.+++..|..+ .                                
T Consensus       399 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~--------------------------------  445 (606)
T 3vq2_A          399 EELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIF-L--------------------------------  445 (606)
T ss_dssp             TTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTT-T--------------------------------
T ss_pred             CCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhh-c--------------------------------
Confidence            999999999999998877 688999999999999999987766542 1                                


Q ss_pred             eecCCchhhhhhcccceEEEccCCccccc-CCcccccccCCceeecccccceecCCc-ccCccCCcEEeCCCCcCcccCC
Q 004747          547 AIDTNELSFNYQLFSAVGMDLSDNLLHGT-IPKGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIP  624 (732)
Q Consensus       547 ~~~~~~~~~~~~l~~L~~LdLs~N~l~g~-ip~~l~~l~~L~~L~Ls~N~l~~~ip~-l~~l~~L~~LdLs~N~l~~~ip  624 (732)
                                 .+++|++|++++|++++. +|..+..+++|++|++++|++++.+|. +.++++|++|+|++|++++.+|
T Consensus       446 -----------~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~  514 (606)
T 3vq2_A          446 -----------GLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDS  514 (606)
T ss_dssp             -----------TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEG
T ss_pred             -----------CCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCH
Confidence                       277899999999999984 788999999999999999999998888 8999999999999999999999


Q ss_pred             cCCCCCCCCCEEEcccCcceeeCCCC-CCCC-CcCc-cccCCCCCCCCC
Q 004747          625 GNISSLQELTLLNLSYNSFSGFVPWK-QGYQ-KFPG-AFAGNPNLCLES  670 (732)
Q Consensus       625 ~~l~~l~~L~~L~ls~N~l~g~ip~~-~~~~-~~~~-~~~gn~~lcg~~  670 (732)
                      ..+..+++|++||+++|+++. +|.. ..+. .+.. .+.|||..|..+
T Consensus       515 ~~~~~l~~L~~L~l~~N~l~~-~p~~~~~l~~~L~~l~l~~N~~~c~c~  562 (606)
T 3vq2_A          515 SHYNQLYSLSTLDCSFNRIET-SKGILQHFPKSLAFFNLTNNSVACICE  562 (606)
T ss_dssp             GGTTTCTTCCEEECTTSCCCC-EESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred             HHccCCCcCCEEECCCCcCcc-cCHhHhhhcccCcEEEccCCCcccCCc
Confidence            999999999999999999995 5544 2222 2344 789999998644

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=4.8e-53  Score=500.26  Aligned_cols=521  Identities=22%  Similarity=0.235  Sum_probs=439.0

Q ss_pred             EEcCCCCCcccccccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEECCCCCCCCCC-CccccCCCCCCEEeCCCCC
Q 004747           87 INLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVV-PDAIMKLRNLRELILKGNP  165 (732)
Q Consensus        87 L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~Ls~n~  165 (732)
                      .+.++++++ .+|.   ..+++++|||++|.+++..+..|.++++|++|||++|.+.+.+ |.+|.++++|++|+|++| 
T Consensus         9 ~dcs~~~L~-~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N-   83 (844)
T 3j0a_A            9 AFYRFCNLT-QVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS-   83 (844)
T ss_dssp             EEESCCCSS-CCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC-
T ss_pred             EEccCCCCC-CCCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC-
Confidence            455666776 3444   4579999999999999888999999999999999999766555 889999999999999999 


Q ss_pred             CCCCcCCchhhhcccCCcEEEeeCcccccccCcc--cCCCCCCCEEEeecccCCCcccc----ccccccEEECCCCcCcc
Q 004747          166 ELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPES--LYYLKSLKHLDLEKNNLTGNVHD----FYQSLLVLNLGSNRFSG  239 (732)
Q Consensus       166 ~~~~~~p~~~~~l~~~L~~L~Ls~n~l~~~~p~~--l~~l~~L~~L~Ls~n~l~~~~~~----~~~~L~~L~L~~n~l~~  239 (732)
                      .+.+..|..+.++ ++|++|+|++|.+++.+|..  +.++++|++|+|++|.+++..+.    .+.+|++|++++|.+++
T Consensus        84 ~l~~~~p~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~  162 (844)
T 3j0a_A           84 KIYFLHPDAFQGL-FHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL  162 (844)
T ss_dssp             CCCEECTTSSCSC-SSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCC
T ss_pred             cCcccCHhHccCC-cccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCe
Confidence            6778889999999 99999999999999877765  89999999999999999887542    34569999999999999


Q ss_pred             ccCchhhcc--cccCeeeCCCCccccccchhhhccCC------CCEEEeccCCCCCcCccccccC---cCCcEEEccCCC
Q 004747          240 TLPCFAASA--MSLTVLKLDNNSVVGGIPTCIASLQA------LTHLNLSHNHLNYEISPRLVFF---EKLLLLDLSFND  308 (732)
Q Consensus       240 ~~~~~~~~~--~~L~~L~Ls~n~l~~~~~~~l~~l~~------L~~L~L~~n~l~~~~~~~l~~l---~~L~~L~Ls~n~  308 (732)
                      ..+..+..+  ++|+.|++++|.+.+..|..++.+++      |++|++++|.+++..+..+...   .+++.+.++.+.
T Consensus       163 ~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~  242 (844)
T 3j0a_A          163 VCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHI  242 (844)
T ss_dssp             CCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSC
T ss_pred             eCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccc
Confidence            888888877  89999999999999888877766665      9999999999988877766543   678888887433


Q ss_pred             ---------CCCCCchhhhhcCCCCCccEEeCCCCcccCCCcccccCCCCCCEEeccCccCCCccccccCCCCCCCEEEc
Q 004747          309 ---------LSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDL  379 (732)
Q Consensus       309 ---------l~~~~p~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L  379 (732)
                               +.+..+..+..+. .++|+.|++++|.+.+..|..+..+++|+.|++++|.+++..|..|..+++|++|++
T Consensus       243 ~~~~~~~~~l~~~~~~~f~~l~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L  321 (844)
T 3j0a_A          243 MGAGFGFHNIKDPDQNTFAGLA-RSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNL  321 (844)
T ss_dssp             CBCSSSCSSSTTGGGTTTTTTT-TSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEE
T ss_pred             ccccccccccCCCChhhhhccc-cCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEEC
Confidence                     3222222333321 248999999999999888889999999999999999999888889999999999999


Q ss_pred             cCCcCccccCccccCCcCcceeecccccccccCcccccCCCCCcEEEcccCceeeeccccCCCCCCCCEEEccCCccccc
Q 004747          380 SHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGS  459 (732)
Q Consensus       380 s~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~  459 (732)
                      ++|.+++..|..+.++++|+.|++++|.+.+..+..+..+++|+.|++++|.+++ +    ..+++|+.|++++|+++ .
T Consensus       322 s~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-i----~~~~~L~~L~l~~N~l~-~  395 (844)
T 3j0a_A          322 SYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT-I----HFIPSIPDIFLSGNKLV-T  395 (844)
T ss_dssp             ESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC-C----SSCCSCSEEEEESCCCC-C
T ss_pred             CCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCc-c----cCCCCcchhccCCCCcc-c
Confidence            9999998889999999999999999999998888889999999999999999984 2    23789999999999998 4


Q ss_pred             chhhhhcCCCCCEEEcccCCCcccc-chhhhcCCCCCEEEccCCcCcccCCcccccCccccCcCCCCCCCCCCcccCCCc
Q 004747          460 LNDAITKWTNLKYFSIARNKLSGNL-PNWLFSFQAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRS  538 (732)
Q Consensus       460 ~~~~~~~l~~L~~L~L~~N~l~~~~-p~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  538 (732)
                      +|..   ..+++.|++++|++.+.. +..+..+++|+.|++++|++++..+...+.                        
T Consensus       396 l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~------------------------  448 (844)
T 3j0a_A          396 LPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPS------------------------  448 (844)
T ss_dssp             CCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSC------------------------
T ss_pred             cccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccc------------------------
Confidence            4433   568999999999998643 344668999999999999998654432211                        


Q ss_pred             eeEEeEEEeecCCchhhhhhcccceEEEccCCccc-----ccCCcccccccCCceeecccccceecCCc-ccCccCCcEE
Q 004747          539 MVIRISVTAIDTNELSFNYQLFSAVGMDLSDNLLH-----GTIPKGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLRAL  612 (732)
Q Consensus       539 ~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~-----g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~-l~~l~~L~~L  612 (732)
                                         .+++|+.|++++|.++     +..|..+..+++|++|+|++|++++.+|. +..+++|+.|
T Consensus       449 -------------------~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  509 (844)
T 3j0a_A          449 -------------------ENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGL  509 (844)
T ss_dssp             -------------------SCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEE
T ss_pred             -------------------cCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhhee
Confidence                               1678899999999997     44556788999999999999999988888 8899999999


Q ss_pred             eCCCCcCcccCCcCCCCCCCCCEEEcccCcceeeCCCCCCCCCcCc-cccCCCCCCCCC
Q 004747          613 DLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVPWKQGYQKFPG-AFAGNPNLCLES  670 (732)
Q Consensus       613 dLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~-~~~gn~~lcg~~  670 (732)
                      ||++|++++..|..+.  ++|++||+++|+++|.+|..  +..+.. .+.|||..|..+
T Consensus       510 ~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~--~~~L~~l~l~~Np~~C~c~  564 (844)
T 3j0a_A          510 SLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV--FVSLSVLDITHNKFICECE  564 (844)
T ss_dssp             EEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC--CSSCCEEEEEEECCCCSSS
T ss_pred             ECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhH--hCCcCEEEecCCCcccccc
Confidence            9999999988888776  89999999999999999864  445555 889999999654

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=3e-54  Score=501.31  Aligned_cols=499  Identities=19%  Similarity=0.213  Sum_probs=276.9

Q ss_pred             CHHhHHHHHHHHhcCCCCCCCCCCCC--C----CCC--CCc------------cceeecCCCCcEEEEEcCCCCCccccc
Q 004747           40 NLEDKASLLLFKSLVQDPTQKLSSWV--G----SNC--TNW------------TGVACNFQTGHVVSINLTDTSLSGQVH   99 (732)
Q Consensus        40 ~~~~~~~l~~~k~~~~~~~~~l~~w~--~----~~~--c~w------------~gv~c~~~~~~v~~L~L~~~~l~~~~~   99 (732)
                      ..+|++||++||+++.+|     +|.  +    .+|  |.|            .||.|+. .++|++|+|+++++.|.+|
T Consensus       267 ~~~d~~ALl~~k~~l~~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~~~L~G~ip  340 (876)
T 4ecn_A          267 YIKDYKALKAIWEALDGK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGFGAKGRVP  340 (876)
T ss_dssp             HHHHHHHHHHHHHHTTGG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTTTCCEEEEC
T ss_pred             chHHHHHHHHHHHHcCCC-----CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECccCCCCCcCc
Confidence            457888999999999876     682  2    245  999            9999985 7899999999999999999


Q ss_pred             ccccCCCCCCEEEC-CCCCCCCcccccccCCC-CCCE--------------EEC-CCCCCCC-----------CCCcccc
Q 004747          100 PRLCKLSFLEFLVL-SSNAFTGRISTCFGGLS-GLKT--------------LDL-SYNKFVG-----------VVPDAIM  151 (732)
Q Consensus       100 ~~l~~l~~L~~L~L-s~n~l~~~~~~~~~~l~-~L~~--------------L~L-s~n~l~~-----------~~p~~~~  151 (732)
                      +++++|++|++|+| ++|.+.|..+....... .+..              ++. ....+.+           ..+....
T Consensus       341 ~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~~~  420 (876)
T 4ecn_A          341 DAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKD  420 (876)
T ss_dssp             GGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCCCC
T ss_pred             hHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccccccccc
Confidence            99999999999999 88888766332111110 0000              000 0000000           0011111


Q ss_pred             CCCCCCEEeCCC--CCCCCCcCCchhhhcccCCcEEEeeCccccc-----------------ccCcccC--CCCCCCEEE
Q 004747          152 KLRNLRELILKG--NPELGGVFPGWVGNFSMNLEKLDFSFNSFCG-----------------EIPESLY--YLKSLKHLD  210 (732)
Q Consensus       152 ~l~~L~~L~Ls~--n~~~~~~~p~~~~~l~~~L~~L~Ls~n~l~~-----------------~~p~~l~--~l~~L~~L~  210 (732)
                      ....++.+.+..  | .+++ +|..++++ ++|++|+|++|.+++                 .+|..++  ++++|++|+
T Consensus       421 ~~l~l~~l~l~~~~N-~L~~-IP~~l~~L-~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~  497 (876)
T 4ecn_A          421 SRISLKDTQIGNLTN-RITF-ISKAIQRL-TKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVE  497 (876)
T ss_dssp             CCCCCCTTTTTCCSC-EEEE-ECGGGGGC-TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEE
T ss_pred             cccchhhceeccccC-cccc-hhHHHhcC-CCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEE
Confidence            222333333333  3 3444 66667776 677777777777776                 4777766  777777777


Q ss_pred             eecccCCCccccccccccEEECCCCcCccccCchhhcccccCeeeCCCCc-ccc-ccchhhhccC-------CCCEEEec
Q 004747          211 LEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNS-VVG-GIPTCIASLQ-------ALTHLNLS  281 (732)
Q Consensus       211 Ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~-l~~-~~~~~l~~l~-------~L~~L~L~  281 (732)
                      |++|.+.+                     .+|..+.++++|++|++++|+ +++ .+|..++.++       +|++|+++
T Consensus       498 Ls~N~l~~---------------------~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls  556 (876)
T 4ecn_A          498 LYNCPNMT---------------------QLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMG  556 (876)
T ss_dssp             EESCTTCC---------------------SCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECC
T ss_pred             CcCCCCCc---------------------cChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEee
Confidence            77766544                     455555566666666666665 655 5666555554       66666666


Q ss_pred             cCCCCCcCcc--ccccCcCCcEEEccCCCCCCCCchhhhhcCCCCCccEEeCCCCcccCCCcccccCCCC-CCEEeccCc
Q 004747          282 HNHLNYEISP--RLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKS-LQALFLSNN  358 (732)
Q Consensus       282 ~n~l~~~~~~--~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~-L~~L~Ls~n  358 (732)
                      +|.++ .+|.  .+..+++|+.|++++|.++ .+| .+..++   +|+.|++++|.++ .+|..+..+++ |+.|++++|
T Consensus       557 ~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~---~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N  629 (876)
T 4ecn_A          557 YNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNV---KLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHN  629 (876)
T ss_dssp             SSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTS---EESEEECCSSCCS-CCCTTSCEECTTCCEEECCSS
T ss_pred             CCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCC---cceEEECcCCccc-cchHHHhhccccCCEEECcCC
Confidence            66666 5555  5666666666666666666 555 344333   6666666666666 56666666666 666666666


Q ss_pred             cCCCccccccCCCCC--CCEEEccCCcCccccCccc---c--CCcCcceeecccccccccCcccccCCCCCcEEEcccCc
Q 004747          359 LLIGEIPARIGNLTY--LQVIDLSHNMLSGSIPLNI---V--GCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQ  431 (732)
Q Consensus       359 ~l~~~~p~~l~~l~~--L~~L~Ls~n~l~~~~p~~~---~--~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~  431 (732)
                      .++ .+|..+..++.  |+.|++++|.+.+.+|...   .  .+.+|+.|++++|.+....+..+..+++|+.|++++|+
T Consensus       630 ~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~  708 (876)
T 4ecn_A          630 KLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNL  708 (876)
T ss_dssp             CCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCC
T ss_pred             CCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCc
Confidence            666 55655555443  6666776666665544221   1  12234444444444442222222344444444444444


Q ss_pred             eeeeccccCCCCCCCCEEEccCCcccccchhhhhcCCCCCEEEcccCCCccccchhhh--cCCCCCEEEccCCcCcccCC
Q 004747          432 ISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLF--SFQAIQMMDFSTNKFMGFIP  509 (732)
Q Consensus       432 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~--~~~~L~~L~ls~N~l~~~~p  509 (732)
                      ++ .+|..+.....                ....++++|+.|+|++|+++ .+|..+.  .+++|+.|++++|++++ +|
T Consensus       709 L~-~ip~~~~~~~~----------------~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp  769 (876)
T 4ecn_A          709 MT-SIPENSLKPKD----------------GNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FP  769 (876)
T ss_dssp             CS-CCCTTSSSCTT----------------SCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CC
T ss_pred             CC-ccChHHhcccc----------------ccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cc
Confidence            44 33322111100                00001124555555555555 4444443  45555555555555443 33


Q ss_pred             cccccCccccCcCCCCCCCCCCcccCCCceeEEeEEEeecCCchhhhhhcccceEEEccC------CcccccCCcccccc
Q 004747          510 DGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVGMDLSD------NLLHGTIPKGLFQL  583 (732)
Q Consensus       510 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~------N~l~g~ip~~l~~l  583 (732)
                      ..++                                            .+++|+.|+|++      |++.+.+|..+.++
T Consensus       770 ~~l~--------------------------------------------~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L  805 (876)
T 4ecn_A          770 TQPL--------------------------------------------NSSQLKAFGIRHQRDAEGNRILRQWPTGITTC  805 (876)
T ss_dssp             CGGG--------------------------------------------GCTTCCEEECCCCBCTTCCBCCCCCCTTGGGC
T ss_pred             hhhh--------------------------------------------cCCCCCEEECCCCCCcccccccccChHHHhcC
Confidence            3221                                            134444444444      55555555555555


Q ss_pred             cCCceeecccccceecCCc-ccCccCCcEEeCCCCcCcccCCcCCCCCCCCCEEEcccCc
Q 004747          584 QGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNS  642 (732)
Q Consensus       584 ~~L~~L~Ls~N~l~~~ip~-l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~  642 (732)
                      ++|+.|+|++|++ +.+|. +.  ++|+.|||++|++....+..+.....+..+.+.+|+
T Consensus       806 ~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~  862 (876)
T 4ecn_A          806 PSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDK  862 (876)
T ss_dssp             SSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCT
T ss_pred             CCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCCC
Confidence            5555555555555 34554 33  355555555555554444444333334444444443

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=6.7e-51  Score=460.62  Aligned_cols=491  Identities=18%  Similarity=0.174  Sum_probs=366.5

Q ss_pred             CCCccceeecCCCCcEEEEEcCCCCCcccccccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEECCCCCCCCCCCc
Q 004747           69 CTNWTGVACNFQTGHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPD  148 (732)
Q Consensus        69 ~c~w~gv~c~~~~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~  148 (732)
                      .|.|.|+ |+.          ++++++ .+|..+.  ++|++|++++|++++..|..|.++++|++|++++|++++..|.
T Consensus         3 ~C~~~~~-c~~----------~~~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~   68 (549)
T 2z81_A            3 SCDASGV-CDG----------RSRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGD   68 (549)
T ss_dssp             EECTTSE-EEC----------TTSCCS-SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTT
T ss_pred             cCCCCce-EEC----------CCCccc-cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChh
Confidence            3889888 863          344554 4565554  7899999999999988888999999999999999999988889


Q ss_pred             cccCCCCCCEEeCCCCCCCCCcCCchhhhcccCCcEEEeeCccccc-ccCcccCCCCCCCEEEeecccCCCccc-cc---
Q 004747          149 AIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCG-EIPESLYYLKSLKHLDLEKNNLTGNVH-DF---  223 (732)
Q Consensus       149 ~~~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~~-~~---  223 (732)
                      +|+++++|++|++++| .+.+..|..++.+ ++|++|++++|.+++ ..|..++++++|++|++++|.+.+.++ ..   
T Consensus        69 ~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~  146 (549)
T 2z81_A           69 AFYSLGSLEHLDLSDN-HLSSLSSSWFGPL-SSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAG  146 (549)
T ss_dssp             TTTTCTTCCEEECTTS-CCCSCCHHHHTTC-TTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTT
T ss_pred             hccccccCCEEECCCC-ccCccCHHHhccC-CCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhc
Confidence            9999999999999999 5677777778888 899999999999986 457789999999999999998544433 33   


Q ss_pred             cccccEEECCCCcCccccCchhhcccccCeeeCCCCccccccchh-hhccCCCCEEEeccCCCCCcC---ccccccCcCC
Q 004747          224 YQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTC-IASLQALTHLNLSHNHLNYEI---SPRLVFFEKL  299 (732)
Q Consensus       224 ~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~-l~~l~~L~~L~L~~n~l~~~~---~~~l~~l~~L  299 (732)
                      +.+|++|++++|.+++..|..+..+++|++|++++|.+.. +|.. +..+++|++|++++|.+++..   ......+++|
T Consensus       147 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L  225 (549)
T 2z81_A          147 LTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAF-LLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPM  225 (549)
T ss_dssp             CCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTT-HHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCC
T ss_pred             ccccCeeeccCCcccccChhhhhccccCceEecccCcccc-cchhhHhhcccccEEEccCCccccccccccchhhhhhcc
Confidence            3447777777777777777777777788888888777653 3433 345777888888877776532   1122345667


Q ss_pred             cEEEccCCCCCCCCchhhhhc-CCCCCccEEeCCCCcccCCCcccccCCCCCCEEeccCccCCCccccccCCCCCCCEEE
Q 004747          300 LLLDLSFNDLSGPLPSKIAQT-TEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVID  378 (732)
Q Consensus       300 ~~L~Ls~n~l~~~~p~~~~~l-~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~  378 (732)
                      +.|++++|.+++..+..+... ...++|+.+++++|.+.+.....     .             .....+..+++|+.++
T Consensus       226 ~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~-----~-------------~~~~~~~~l~~L~~L~  287 (549)
T 2z81_A          226 KKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFN-----P-------------SESDVVSELGKVETVT  287 (549)
T ss_dssp             CEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCC-----C-------------CTTTCCCCCTTCCEEE
T ss_pred             cceeccccccchhHHHHHHHHhhhhcccccccccccccccccccc-----c-------------cchhhhhhhccccccc
Confidence            777777776665444333221 12235666666666554321000     0             0011233455556666


Q ss_pred             ccCCcCccc-----cCccccCCcCcceeecccccccccCcccc-cCCCCCcEEEcccCceeeecc---ccCCCCCCCCEE
Q 004747          379 LSHNMLSGS-----IPLNIVGCFQLLALIVNNNNLSGEIQPEL-DALDSLKILDISNNQISGEIP---LTLAGLKSLEIV  449 (732)
Q Consensus       379 Ls~n~l~~~-----~p~~~~~~~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~p---~~~~~l~~L~~L  449 (732)
                      +.++.+...     ++..+....+|+.|++++|.+.. +|..+ ..+++|++|++++|++++.+|   ..+..+++|++|
T Consensus       288 l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~-ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L  366 (549)
T 2z81_A          288 IRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFL-VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTL  366 (549)
T ss_dssp             EESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCC-CCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEE
T ss_pred             ccccccchhhhcccchhhhhhcccceEEEeccCcccc-CCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEE
Confidence            655554321     12222334577778888877763 44443 578999999999999988764   347788999999


Q ss_pred             EccCCcccccch--hhhhcCCCCCEEEcccCCCccccchhhhcCCCCCEEEccCCcCcccCCcccccCccccCcCCCCCC
Q 004747          450 DFSSNNLSGSLN--DAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRS  527 (732)
Q Consensus       450 ~Ls~N~l~~~~~--~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~  527 (732)
                      ++++|++++..+  ..+..+++|++|++++|+++ .+|..+..+++|++|++++|++++ +|...               
T Consensus       367 ~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~-l~~~~---------------  429 (549)
T 2z81_A          367 VLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV-VKTCI---------------  429 (549)
T ss_dssp             ECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSC-CCTTS---------------
T ss_pred             EccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCccc-ccchh---------------
Confidence            999999986543  56888999999999999998 688888999999999999999863 33221               


Q ss_pred             CCCCcccCCCceeEEeEEEeecCCchhhhhhcccceEEEccCCcccccCCcccccccCCceeecccccceecCCcccCcc
Q 004747          528 MPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLR  607 (732)
Q Consensus       528 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~l~~l~  607 (732)
                                                     .+.|++||+++|++++.+    ..+++|++|+|++|+++ .+|....++
T Consensus       430 -------------------------------~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~~~~l~  473 (549)
T 2z81_A          430 -------------------------------PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPDASLFP  473 (549)
T ss_dssp             -------------------------------CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCCGGGCT
T ss_pred             -------------------------------cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCCcccCc
Confidence                                           346889999999999643    47899999999999998 788877899


Q ss_pred             CCcEEeCCCCcCcccCCcCCCCCCCCCEEEcccCcceeeCC
Q 004747          608 SLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVP  648 (732)
Q Consensus       608 ~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip  648 (732)
                      +|++|||++|++++.+|..+..+++|++|++++|++.+..|
T Consensus       474 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  514 (549)
T 2z81_A          474 VLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  514 (549)
T ss_dssp             TCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred             cCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence            99999999999999999999999999999999999998877

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.4e-49  Score=452.05  Aligned_cols=488  Identities=20%  Similarity=0.189  Sum_probs=349.7

Q ss_pred             CCCEEECCCCCCCCcccccccCCCCCCEEECCCCCCCCCCCccccCCCCCCEEeCCCCCCCCCcCCchhhhcccCCcEEE
Q 004747          107 FLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLD  186 (732)
Q Consensus       107 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~~L~~L~  186 (732)
                      ++++|++++|.+++..+.+|.++++|++|+|++|++++..|.+|+++++|++|+|++| .+.+..|..+..+ ++|++|+
T Consensus        29 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l-~~L~~L~  106 (570)
T 2z63_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGL-SSLQKLV  106 (570)
T ss_dssp             SCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTC-TTCCEEE
T ss_pred             cccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCC-cCCccCHhhhcCc-ccccccc
Confidence            4555666666655555555555666666666666555555555555666666666655 3444444555555 5566666


Q ss_pred             eeCcccccccCcccCCCCCCCEEEeecccCCCc-ccccc---ccccEEECCCCcCccccCchhhccccc----CeeeCCC
Q 004747          187 FSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGN-VHDFY---QSLLVLNLGSNRFSGTLPCFAASAMSL----TVLKLDN  258 (732)
Q Consensus       187 Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~~~~~---~~L~~L~L~~n~l~~~~~~~~~~~~~L----~~L~Ls~  258 (732)
                      +++|.+++..+..++++++|++|++++|.+++. .|..+   .+|++|++++|.+++..+..+..+++|    +.|++++
T Consensus       107 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~  186 (570)
T 2z63_A          107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL  186 (570)
T ss_dssp             CTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTT
T ss_pred             ccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCC
Confidence            666655544333455566666666666655542 23322   335555666665555555556666666    5666666


Q ss_pred             CccccccchhhhccCCCCEEEeccCCCCC-cCccccccCcCCcEEEccCCCCC------CCCchhhhhcCCCCCccEEeC
Q 004747          259 NSVVGGIPTCIASLQALTHLNLSHNHLNY-EISPRLVFFEKLLLLDLSFNDLS------GPLPSKIAQTTEKAGLVLLDL  331 (732)
Q Consensus       259 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~Ls~n~l~------~~~p~~~~~l~~~~~L~~L~L  331 (732)
                      |.+.+..|..+... +|++|++++|.... .++..+..++.++...+....+.      ......+..+... .++.+++
T Consensus       187 n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l-~l~~l~l  264 (570)
T 2z63_A          187 NPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNL-TIEEFRL  264 (570)
T ss_dssp             CCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGS-EEEEEEE
T ss_pred             CCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhcccccc-chhhhhh
Confidence            66665555555444 56666666653321 23344445555554444322111      1111122222221 4777888


Q ss_pred             CCC-cccCCCcccccCCCCCCEEeccCccCCCccccccCCCCCCCEEEccCCcCccccCccccCCcCcceeecccccccc
Q 004747          332 SHN-RFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSG  410 (732)
Q Consensus       332 s~n-~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~  410 (732)
                      +++ .+.+..|..+..+++|+.|++++|.++ .+|..+..+ +|++|++++|.+. .+|.  ..+++|+.|++++|.+.+
T Consensus       265 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~  339 (570)
T 2z63_A          265 AYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGN  339 (570)
T ss_dssp             EETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCC
T ss_pred             hcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccc
Confidence            887 777788888888999999999999988 578888888 9999999999987 5665  477889999999999887


Q ss_pred             cCcccccCCCCCcEEEcccCceeeec--cccCCCCCCCCEEEccCCcccccchhhhhcCCCCCEEEcccCCCccccc-hh
Q 004747          411 EIQPELDALDSLKILDISNNQISGEI--PLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLP-NW  487 (732)
Q Consensus       411 ~~~~~~~~l~~L~~L~L~~n~l~~~~--p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p-~~  487 (732)
                      ..+.  ..+++|++|++++|.+++..  +..+.++++|++|++++|.+.+..+. +..+++|++|++++|.+.+..| ..
T Consensus       340 ~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~  416 (570)
T 2z63_A          340 AFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSV  416 (570)
T ss_dssp             BCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCT
T ss_pred             cccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhh
Confidence            7665  67899999999999998654  67788899999999999999865554 8889999999999999987766 56


Q ss_pred             hhcCCCCCEEEccCCcCcccCCcccccCccccCcCCCCCCCCCCcccCCCceeEEeEEEeecCCchhhhhhcccceEEEc
Q 004747          488 LFSFQAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVGMDL  567 (732)
Q Consensus       488 ~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdL  567 (732)
                      +..+++|++|++++|.+.+..|..+ .                                           .+++|+.|++
T Consensus       417 ~~~l~~L~~L~l~~n~l~~~~~~~~-~-------------------------------------------~l~~L~~L~l  452 (570)
T 2z63_A          417 FLSLRNLIYLDISHTHTRVAFNGIF-N-------------------------------------------GLSSLEVLKM  452 (570)
T ss_dssp             TTTCTTCCEEECTTSCCEECCTTTT-T-------------------------------------------TCTTCCEEEC
T ss_pred             hhcCCCCCEEeCcCCcccccchhhh-h-------------------------------------------cCCcCcEEEC
Confidence            8889999999999999987665432 1                                           2778999999


Q ss_pred             cCCccc-ccCCcccccccCCceeecccccceecCCc-ccCccCCcEEeCCCCcCcccCCcCCCCCCCCCEEEcccCccee
Q 004747          568 SDNLLH-GTIPKGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSG  645 (732)
Q Consensus       568 s~N~l~-g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~-l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g  645 (732)
                      ++|.++ +.+|..+..+++|++|++++|++++.+|. +.++++|++|++++|++++.+|..|..+++|++|++++|+++|
T Consensus       453 ~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~  532 (570)
T 2z63_A          453 AGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  532 (570)
T ss_dssp             TTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             cCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccC
Confidence            999998 67999999999999999999999998887 8899999999999999999999999999999999999999999


Q ss_pred             eCCCC
Q 004747          646 FVPWK  650 (732)
Q Consensus       646 ~ip~~  650 (732)
                      .+|..
T Consensus       533 ~~~~~  537 (570)
T 2z63_A          533 SCPRI  537 (570)
T ss_dssp             CTTTT
T ss_pred             CCcch
Confidence            98854

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=4.7e-48  Score=439.49  Aligned_cols=487  Identities=22%  Similarity=0.215  Sum_probs=416.6

Q ss_pred             CCcEEEEEcCCCCCcccccccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEECCCCCCCCCCCccccCCCCCCEEe
Q 004747           81 TGHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELI  160 (732)
Q Consensus        81 ~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~  160 (732)
                      ..+++.|+++++.+++..+.++.++++|++|++++|++++..+..|+++++|++|+|++|.+++..|.+|+++++|++|+
T Consensus        27 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  106 (570)
T 2z63_A           27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV  106 (570)
T ss_dssp             CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred             cccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccc
Confidence            45799999999999988888999999999999999999988888999999999999999999988889999999999999


Q ss_pred             CCCCCCCCCcCCchhhhcccCCcEEEeeCccccc-ccCcccCCCCCCCEEEeecccCCCccccccc---cc----cEEEC
Q 004747          161 LKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCG-EIPESLYYLKSLKHLDLEKNNLTGNVHDFYQ---SL----LVLNL  232 (732)
Q Consensus       161 Ls~n~~~~~~~p~~~~~l~~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~---~L----~~L~L  232 (732)
                      +++| .+.+..+..++++ ++|++|++++|.+++ .+|..++++++|++|++++|.+++..+..+.   +|    +.|++
T Consensus       107 L~~n-~l~~l~~~~~~~l-~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l  184 (570)
T 2z63_A          107 AVET-NLASLENFPIGHL-KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL  184 (570)
T ss_dssp             CTTS-CCCCSTTCSCTTC-TTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEEC
T ss_pred             cccc-ccccCCCcccccc-ccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhccc
Confidence            9999 4555555567888 899999999999987 4799999999999999999999988776554   36    89999


Q ss_pred             CCCcCccccCchhhcccccCeeeCCCCcccc-ccchhhhccCCCCEEEeccCCCCC------cCccccccCc--CCcEEE
Q 004747          233 GSNRFSGTLPCFAASAMSLTVLKLDNNSVVG-GIPTCIASLQALTHLNLSHNHLNY------EISPRLVFFE--KLLLLD  303 (732)
Q Consensus       233 ~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~------~~~~~l~~l~--~L~~L~  303 (732)
                      ++|.+++..|..+... +|+.|++++|.... .++..+..++.++.+.+....+..      .....+..++  .++.++
T Consensus       185 ~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~  263 (570)
T 2z63_A          185 SLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR  263 (570)
T ss_dssp             TTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEE
T ss_pred             CCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhh
Confidence            9999998888777765 89999999985432 356677888888877765433221      1112233333  356778


Q ss_pred             ccCC-CCCCCCchhhhhcCCCCCccEEeCCCCcccCCCcccccCCCCCCEEeccCccCCCccccccCCCCCCCEEEccCC
Q 004747          304 LSFN-DLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHN  382 (732)
Q Consensus       304 Ls~n-~l~~~~p~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n  382 (732)
                      ++++ .+.+..|..+..+.   +|+.|++++|.++ .+|..+..+ +|++|++++|.+. .+|.  ..+++|+.|++++|
T Consensus       264 l~~~~~~~~~~~~~~~~l~---~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n  335 (570)
T 2z63_A          264 LAYLDYYLDDIIDLFNCLT---NVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSN  335 (570)
T ss_dssp             EEETTEEESCSTTTTGGGT---TCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESC
T ss_pred             hhcchhhhhhchhhhcCcC---cccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCC
Confidence            8877 67777888887777   8999999999998 688888888 9999999999998 6665  57899999999999


Q ss_pred             cCccccCccccCCcCcceeecccccccccC--cccccCCCCCcEEEcccCceeeeccccCCCCCCCCEEEccCCcccccc
Q 004747          383 MLSGSIPLNIVGCFQLLALIVNNNNLSGEI--QPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSL  460 (732)
Q Consensus       383 ~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~  460 (732)
                      .+.+..+.  ..+++|+.|++++|.+++..  +..+..+++|++|++++|.+.+..+. +..+++|++|++++|.+.+..
T Consensus       336 ~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~  412 (570)
T 2z63_A          336 KGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMS  412 (570)
T ss_dssp             BSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCT
T ss_pred             cccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCcccccc
Confidence            98876665  68899999999999998764  67788999999999999999966554 899999999999999999776


Q ss_pred             h-hhhhcCCCCCEEEcccCCCccccchhhhcCCCCCEEEccCCcCc-ccCCcccccCccccCcCCCCCCCCCCcccCCCc
Q 004747          461 N-DAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFM-GFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRS  538 (732)
Q Consensus       461 ~-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~ls~N~l~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  538 (732)
                      + ..+..+++|++|++++|.+.+..|..+..+++|++|++++|.++ +.+|..+ .                        
T Consensus       413 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~-~------------------------  467 (570)
T 2z63_A          413 EFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF-T------------------------  467 (570)
T ss_dssp             TSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCC-T------------------------
T ss_pred             chhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhh-h------------------------
Confidence            5 56889999999999999999999999999999999999999997 4566432 1                        


Q ss_pred             eeEEeEEEeecCCchhhhhhcccceEEEccCCcccccCCcccccccCCceeecccccceecCCc-ccCccCCcEEeCCCC
Q 004747          539 MVIRISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHN  617 (732)
Q Consensus       539 ~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~-l~~l~~L~~LdLs~N  617 (732)
                                         .+++|+.||+++|++++..|..+.++++|++|++++|++++.+|. +.++++|+.|++++|
T Consensus       468 -------------------~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N  528 (570)
T 2z63_A          468 -------------------ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTN  528 (570)
T ss_dssp             -------------------TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             -------------------cccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCC
Confidence                               278899999999999988899999999999999999999988887 889999999999999


Q ss_pred             cCcccCCc
Q 004747          618 SLTGQIPG  625 (732)
Q Consensus       618 ~l~~~ip~  625 (732)
                      .+++..|.
T Consensus       529 ~~~~~~~~  536 (570)
T 2z63_A          529 PWDCSCPR  536 (570)
T ss_dssp             CBCCCTTT
T ss_pred             cccCCCcc
Confidence            99987764

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=5.6e-49  Score=450.24  Aligned_cols=460  Identities=19%  Similarity=0.256  Sum_probs=332.5

Q ss_pred             CCCCEEECCCCCCCCCCCccccCCCCCCEEeCCCCCCC-----CC------cCCchhhhcccCCcEEEeeCcccccccCc
Q 004747          130 SGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPEL-----GG------VFPGWVGNFSMNLEKLDFSFNSFCGEIPE  198 (732)
Q Consensus       130 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~-----~~------~~p~~~~~l~~~L~~L~Ls~n~l~~~~p~  198 (732)
                      .+++.|+|++|.+.|.+|.+|+++++|++|+|++|...     .+      .+|...  + ..|+ +++++|.+.+.+|.
T Consensus        81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~-~~l~-l~l~~~~l~~~~~~  156 (636)
T 4eco_A           81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--K-QKMR-MHYQKTFVDYDPRE  156 (636)
T ss_dssp             CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--H-HHHH-THHHHHHTCCCGGG
T ss_pred             CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH--H-HHHH-hhHHHhhhccCchh
Confidence            47889999999999999999999999999999999431     11      333333  2 3455 66666666665555


Q ss_pred             ccCCC-CCCCEEEeecccCCCccccccccccEEECCCCcCccccCchhhcccccCeeeCC--CCccccccchhhhccCCC
Q 004747          199 SLYYL-KSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLD--NNSVVGGIPTCIASLQAL  275 (732)
Q Consensus       199 ~l~~l-~~L~~L~Ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls--~n~l~~~~~~~l~~l~~L  275 (732)
                      .+..+ ..+..+++....+.                           ......++.+.+.  .|++++ +|..++++++|
T Consensus       157 ~~~~~~~~l~~~~l~~~~~~---------------------------~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L  208 (636)
T 4eco_A          157 DFSDLIKDCINSDPQQKSIK---------------------------KSSRITLKDTQIGQLSNNITF-VSKAVMRLTKL  208 (636)
T ss_dssp             GSCHHHHHHHHHCTTSCCCC---------------------------CCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTC
T ss_pred             hHHHHHHHHhhcCccccccc---------------------------cccccchhhhhhccccCCCcc-CCHHHhcccCC
Confidence            44311 11111111111110                           0011122223222  356665 66666666666


Q ss_pred             CEEEeccCCCCCc-----------------Cccccc--cCcCCcEEEccCCCCCCCCchhhhhcCCCCCccEEeCCCCc-
Q 004747          276 THLNLSHNHLNYE-----------------ISPRLV--FFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNR-  335 (732)
Q Consensus       276 ~~L~L~~n~l~~~-----------------~~~~l~--~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~L~~L~Ls~n~-  335 (732)
                      ++|++++|.+++.                 +|+.++  ++++|++|++++|.+.+.+|..+..++   +|++|++++|+ 
T Consensus       209 ~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~---~L~~L~Ls~n~~  285 (636)
T 4eco_A          209 RQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALP---EMQLINVACNRG  285 (636)
T ss_dssp             CEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCS---SCCEEECTTCTT
T ss_pred             CEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCC---CCCEEECcCCCC
Confidence            6666666666664                 666666  677777777777776666666666555   67777777776 


Q ss_pred             ccC-CCcccccCC------CCCCEEeccCccCCCcccc--ccCCCCCCCEEEccCCcCccccCccccCCcCcceeecccc
Q 004747          336 FSG-EIPLKITEL------KSLQALFLSNNLLIGEIPA--RIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNN  406 (732)
Q Consensus       336 l~~-~~p~~l~~l------~~L~~L~Ls~n~l~~~~p~--~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n  406 (732)
                      +++ .+|..+..+      ++|++|++++|+++ .+|.  .++++++|++|++++|.++|.+| .+..+++|+.|++++|
T Consensus       286 l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N  363 (636)
T 4eco_A          286 ISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYN  363 (636)
T ss_dssp             SCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSS
T ss_pred             CccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCC
Confidence            666 566666554      77777777777777 6666  67777777777777777777777 7777777777777777


Q ss_pred             cccccCcccccCCCC-CcEEEcccCceeeeccccCCCCC--CCCEEEccCCcccccchhhhh-------cCCCCCEEEcc
Q 004747          407 NLSGEIQPELDALDS-LKILDISNNQISGEIPLTLAGLK--SLEIVDFSSNNLSGSLNDAIT-------KWTNLKYFSIA  476 (732)
Q Consensus       407 ~l~~~~~~~~~~l~~-L~~L~L~~n~l~~~~p~~~~~l~--~L~~L~Ls~N~l~~~~~~~~~-------~l~~L~~L~L~  476 (732)
                      .++ .+|..+..+++ |++|++++|.++ .+|..+..++  +|++|++++|.+++.+|..+.       .+++|++|+++
T Consensus       364 ~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls  441 (636)
T 4eco_A          364 QIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLS  441 (636)
T ss_dssp             EEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECC
T ss_pred             ccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECc
Confidence            777 66667778888 888888888888 7777776654  889999999999888888777       77889999999


Q ss_pred             cCCCccccchh-hhcCCCCCEEEccCCcCcccCCcccccCccccCcCCCCCCCCCCcccCCCceeEEeEEEeecCCchhh
Q 004747          477 RNKLSGNLPNW-LFSFQAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSF  555 (732)
Q Consensus       477 ~N~l~~~~p~~-~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  555 (732)
                      +|+++ .+|.. +..+++|++|++++|+++ .+|...+....                                    ..
T Consensus       442 ~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~------------------------------------~~  483 (636)
T 4eco_A          442 NNQIS-KFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDEN------------------------------------EN  483 (636)
T ss_dssp             SSCCC-SCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETT------------------------------------EE
T ss_pred             CCccC-cCCHHHHccCCCCCEEECCCCCCC-CcCHHHhcccc------------------------------------cc
Confidence            99998 45544 556899999999999998 67766543200                                    00


Q ss_pred             hhhcccceEEEccCCcccccCCcccc--cccCCceeecccccceecCCc-ccCccCCcEEeC------CCCcCcccCCcC
Q 004747          556 NYQLFSAVGMDLSDNLLHGTIPKGLF--QLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDL------SHNSLTGQIPGN  626 (732)
Q Consensus       556 ~~~l~~L~~LdLs~N~l~g~ip~~l~--~l~~L~~L~Ls~N~l~~~ip~-l~~l~~L~~LdL------s~N~l~~~ip~~  626 (732)
                      ..++++|+.|+|++|+++ .+|..+.  .+++|++|+|++|++++ +|. ++++++|++|+|      ++|++.+.+|..
T Consensus       484 ~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~  561 (636)
T 4eco_A          484 FKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEG  561 (636)
T ss_dssp             CTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTT
T ss_pred             ccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHH
Confidence            112558999999999999 8999987  99999999999999997 776 889999999999      568899999999


Q ss_pred             CCCCCCCCEEEcccCcceeeCCCCCCCCCcCc-cccCCCCCCCCC
Q 004747          627 ISSLQELTLLNLSYNSFSGFVPWKQGYQKFPG-AFAGNPNLCLES  670 (732)
Q Consensus       627 l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~-~~~gn~~lcg~~  670 (732)
                      +..+++|++||+++|++ +.||.... ..+.. .+.+|+..|...
T Consensus       562 l~~l~~L~~L~Ls~N~l-~~ip~~~~-~~L~~L~Ls~N~l~~~~~  604 (636)
T 4eco_A          562 ITLCPSLTQLQIGSNDI-RKVNEKIT-PNISVLDIKDNPNISIDL  604 (636)
T ss_dssp             GGGCSSCCEEECCSSCC-CBCCSCCC-TTCCEEECCSCTTCEEEC
T ss_pred             HhcCCCCCEEECCCCcC-CccCHhHh-CcCCEEECcCCCCccccH
Confidence            99999999999999999 88887633 44555 789999887553

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=3e-48  Score=435.64  Aligned_cols=459  Identities=20%  Similarity=0.195  Sum_probs=304.3

Q ss_pred             EEEEcCCCCCcccccccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEECCCCCCCCCCCccccCCCCCCEEeCCCC
Q 004747           85 VSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGN  164 (732)
Q Consensus        85 ~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n  164 (732)
                      +.+++++++++ .+|..+.  ++|++|++++|.+++..|..|.++++|++|+|++|++++..|..|+++++|++|+|++|
T Consensus         3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N   79 (520)
T 2z7x_B            3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN   79 (520)
T ss_dssp             CEEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred             ceEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence            46899999998 5777666  89999999999999888889999999999999999999888999999999999999999


Q ss_pred             CCCCCcCCchhhhcccCCcEEEeeCccccc-ccCcccCCCCCCCEEEeecccCCCccccccccc--cEEECCCCcC--cc
Q 004747          165 PELGGVFPGWVGNFSMNLEKLDFSFNSFCG-EIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSL--LVLNLGSNRF--SG  239 (732)
Q Consensus       165 ~~~~~~~p~~~~~l~~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~L--~~L~L~~n~l--~~  239 (732)
                      + ++ .+|..  .+ ++|++|++++|.+++ .+|..++++++|++|++++|.+++.....+.+|  ++|++++|.+  .+
T Consensus        80 ~-l~-~lp~~--~l-~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~l~~n~l~~~~  154 (520)
T 2z7x_B           80 K-LV-KISCH--PT-VNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEK  154 (520)
T ss_dssp             C-CC-EEECC--CC-CCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGGGGGGGTTSCEEEEEEEECTTTTSS
T ss_pred             c-ee-ecCcc--cc-CCccEEeccCCccccccchhhhccCCcceEEEecCcccchhhccccccceeeEEEeecccccccc
Confidence            4 44 46655  55 899999999999987 578899999999999999999886544445555  7777777766  55


Q ss_pred             ccCchhhccc-ccCeeeCCCCccccccch-hhhccCCCCEEEeccCC-------CCCcCccccccCcCCcEEEccCCCCC
Q 004747          240 TLPCFAASAM-SLTVLKLDNNSVVGGIPT-CIASLQALTHLNLSHNH-------LNYEISPRLVFFEKLLLLDLSFNDLS  310 (732)
Q Consensus       240 ~~~~~~~~~~-~L~~L~Ls~n~l~~~~~~-~l~~l~~L~~L~L~~n~-------l~~~~~~~l~~l~~L~~L~Ls~n~l~  310 (732)
                      ..|..+..+. ....+++++|.+.+.++. .+.++++|+.|++++|.       +.+.++ .+..+++|+.|++++|.++
T Consensus       155 ~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~  233 (520)
T 2z7x_B          155 EDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETT  233 (520)
T ss_dssp             CCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEE
T ss_pred             cccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccC
Confidence            5555554433 222445555555443332 34445555555555554       333232 3444444444444444443


Q ss_pred             CCCchhhhhcCCCCCccEEeCCCCcccCCCcccccCCCCCCEEeccCccCCCcccccc-----CCCCCCCEEEccCCcCc
Q 004747          311 GPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARI-----GNLTYLQVIDLSHNMLS  385 (732)
Q Consensus       311 ~~~p~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l-----~~l~~L~~L~Ls~n~l~  385 (732)
                      +..+..+..                       .+ ..++|++|++++|.++|.+|..+     +++++|+.+++++|.+ 
T Consensus       234 ~~~~~~~~~-----------------------~~-~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-  288 (520)
T 2z7x_B          234 WNSFIRILQ-----------------------LV-WHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-  288 (520)
T ss_dssp             HHHHHHHHH-----------------------HH-HTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-
T ss_pred             HHHHHHHHH-----------------------Hh-hhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-
Confidence            221111111                       11 12466666666666666666666     6777777777777776 


Q ss_pred             cccC-ccccCCcCcceeecccccccccCcccccCCCCCcEEEcccCceeeeccccCCCCCCCCEEEccCCcccccchhhh
Q 004747          386 GSIP-LNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAI  464 (732)
Q Consensus       386 ~~~p-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~  464 (732)
                       .+| ..+..+                     ....+|+.|++++|.+....  .+..+++|++|++++|++++.+|.++
T Consensus       289 -~~p~~~~~~~---------------------~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~  344 (520)
T 2z7x_B          289 -GFPQSYIYEI---------------------FSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENC  344 (520)
T ss_dssp             -CSCTHHHHHH---------------------HHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTC
T ss_pred             -ecchhhhhcc---------------------cccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhh
Confidence             344 222221                     00123444444444443211  11345555555555555555555555


Q ss_pred             hcCCCCCEEEcccCCCcc--ccchhhhcCCCCCEEEccCCcCcccCCcccccCccccCcCCCCCCCCCCcccCCCceeEE
Q 004747          465 TKWTNLKYFSIARNKLSG--NLPNWLFSFQAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIR  542 (732)
Q Consensus       465 ~~l~~L~~L~L~~N~l~~--~~p~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  542 (732)
                      ..+++|++|++++|++++  .+|..+..+++|++|++++|++++.+|...|..                           
T Consensus       345 ~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~---------------------------  397 (520)
T 2z7x_B          345 GHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSW---------------------------  397 (520)
T ss_dssp             CCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCC---------------------------
T ss_pred             ccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhcc---------------------------
Confidence            555555555555555554  344556666666666666666665455433221                           


Q ss_pred             eEEEeecCCchhhhhhcccceEEEccCCcccccCCcccccccCCceeecccccceecCCc-ccCccCCcEEeCCCCcCcc
Q 004747          543 ISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTG  621 (732)
Q Consensus       543 ~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~-l~~l~~L~~LdLs~N~l~~  621 (732)
                                      ++.|+.|++++|++++.+|..+.  ++|++|++++|+++ .+|. ++.+++|++|+|++|++++
T Consensus       398 ----------------l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~  458 (520)
T 2z7x_B          398 ----------------TKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKS  458 (520)
T ss_dssp             ----------------CTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC
T ss_pred             ----------------CccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCc
Confidence                            56677788888888777776654  68888999999888 6666 7788999999999999984


Q ss_pred             cCCcC-CCCCCCCCEEEcccCcceeeCC
Q 004747          622 QIPGN-ISSLQELTLLNLSYNSFSGFVP  648 (732)
Q Consensus       622 ~ip~~-l~~l~~L~~L~ls~N~l~g~ip  648 (732)
                       +|.. +..+++|++|++++|++++..+
T Consensus       459 -l~~~~~~~l~~L~~L~l~~N~~~c~c~  485 (520)
T 2z7x_B          459 -VPDGIFDRLTSLQKIWLHTNPWDCSCP  485 (520)
T ss_dssp             -CCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             -cCHHHhccCCcccEEECcCCCCcccCC
Confidence             5554 8889999999999999987654

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.1e-47  Score=430.95  Aligned_cols=449  Identities=18%  Similarity=0.199  Sum_probs=305.1

Q ss_pred             CEEECCCCCCCCcccccccCCCCCCEEECCCCCCCCCCCccccCCCCCCEEeCCCCCCCCCcCCchhhhcccCCcEEEee
Q 004747          109 EFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFS  188 (732)
Q Consensus       109 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~~L~~L~Ls  188 (732)
                      ++||+++|+++ .+|..+.  ++|++|++++|.+++..|..|.++++|++|+|++|                        
T Consensus         3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n------------------------   55 (520)
T 2z7x_B            3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHN------------------------   55 (520)
T ss_dssp             CEEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSS------------------------
T ss_pred             ceEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCC------------------------
Confidence            45677777766 3555444  66777777777766665566666666666666555                        


Q ss_pred             CcccccccCcccCCCCCCCEEEeecccCCCccccccccccEEECCCCcCccccCchhhcccccCeeeCCCCcccc-ccch
Q 004747          189 FNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVG-GIPT  267 (732)
Q Consensus       189 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~-~~~~  267 (732)
                        .+++..|..|.++++|++|++++|+++.....                        .+++|++|++++|.+++ .+|.
T Consensus        56 --~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~------------------------~l~~L~~L~L~~N~l~~~~~p~  109 (520)
T 2z7x_B           56 --RIQYLDISVFKFNQELEYLDLSHNKLVKISCH------------------------PTVNLKHLDLSFNAFDALPICK  109 (520)
T ss_dssp             --CCCEEEGGGGTTCTTCCEEECCSSCCCEEECC------------------------CCCCCSEEECCSSCCSSCCCCG
T ss_pred             --ccCCcChHHhhcccCCCEEecCCCceeecCcc------------------------ccCCccEEeccCCccccccchh
Confidence              44444455555555555555555554421111                        23334444444444433 2344


Q ss_pred             hhhccCCCCEEEeccCCCCCcCccccccCcCC--cEEEccCCCC--CCCCchhhhhcCCCCCccEEeCCCCcccCCCcc-
Q 004747          268 CIASLQALTHLNLSHNHLNYEISPRLVFFEKL--LLLDLSFNDL--SGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPL-  342 (732)
Q Consensus       268 ~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L--~~L~Ls~n~l--~~~~p~~~~~l~~~~~L~~L~Ls~n~l~~~~p~-  342 (732)
                      .++++++|++|++++|.+++   ..+..+++|  +.|++++|.+  .+..|..+..+..  ....+++++|.+.+.++. 
T Consensus       110 ~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~--~~l~l~l~~n~~~~~~~~~  184 (520)
T 2z7x_B          110 EFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNT--ESLHIVFPTNKEFHFILDV  184 (520)
T ss_dssp             GGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCE--EEEEEECCSSSCCCCCCCC
T ss_pred             hhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccccccccccccccccc--ceEEEEeccCcchhhhhhh
Confidence            44444455555555444443   223334444  5555555555  4444544444332  233456666666654443 


Q ss_pred             cccCCCCCCEEeccCcc-------CCCccccccCCCCCCCEEEccCCcCccccCcccc---CCcCcceeecccccccccC
Q 004747          343 KITELKSLQALFLSNNL-------LIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIV---GCFQLLALIVNNNNLSGEI  412 (732)
Q Consensus       343 ~l~~l~~L~~L~Ls~n~-------l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~---~~~~L~~L~l~~n~l~~~~  412 (732)
                      .+..+++|+.|++++|.       +.+.+| .+..+++|+.|++++|.+++..+..+.   ..++|+.|++++|.+.|.+
T Consensus       185 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~  263 (520)
T 2z7x_B          185 SVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQL  263 (520)
T ss_dssp             CCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCC
T ss_pred             hhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCcc
Confidence            45567777777777776       555555 577778888888888777654332221   2357888888888888888


Q ss_pred             cccc-----cCCCCCcEEEcccCceeeecc-ccCCCC---CCCCEEEccCCcccccchhhhhcCCCCCEEEcccCCCccc
Q 004747          413 QPEL-----DALDSLKILDISNNQISGEIP-LTLAGL---KSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGN  483 (732)
Q Consensus       413 ~~~~-----~~l~~L~~L~L~~n~l~~~~p-~~~~~l---~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  483 (732)
                      |..+     ..+++|+.+++++|.+  .+| ..+..+   .+|+.|++++|.+.+..  .+..+++|++|++++|++++.
T Consensus       264 p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~  339 (520)
T 2z7x_B          264 DFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDT  339 (520)
T ss_dssp             CCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTT
T ss_pred             ccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChh
Confidence            8777     8899999999999998  455 334333   67999999999987542  126789999999999999998


Q ss_pred             cchhhhcCCCCCEEEccCCcCcc--cCCcccccCccccCcCCCCCCCCCCcccCCCceeEEeEEEeecCCchhhhhhccc
Q 004747          484 LPNWLFSFQAIQMMDFSTNKFMG--FIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFS  561 (732)
Q Consensus       484 ~p~~~~~~~~L~~L~ls~N~l~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  561 (732)
                      +|..+..+++|++|++++|++++  .+|..                                            ...+++
T Consensus       340 ~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~--------------------------------------------~~~l~~  375 (520)
T 2z7x_B          340 VFENCGHLTELETLILQMNQLKELSKIAEM--------------------------------------------TTQMKS  375 (520)
T ss_dssp             TTTTCCCCSSCCEEECCSSCCCBHHHHHHH--------------------------------------------HTTCTT
T ss_pred             hhhhhccCCCCCEEEccCCccCccccchHH--------------------------------------------HhhCCC
Confidence            99999999999999999999975  22222                                            123788


Q ss_pred             ceEEEccCCcccccCCcc-cccccCCceeecccccceecCCc-ccCccCCcEEeCCCCcCcccCCcCCCCCCCCCEEEcc
Q 004747          562 AVGMDLSDNLLHGTIPKG-LFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLS  639 (732)
Q Consensus       562 L~~LdLs~N~l~g~ip~~-l~~l~~L~~L~Ls~N~l~~~ip~-l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls  639 (732)
                      |++||+++|++++.+|.. +..+++|++|++++|++++.+|. +.  ++|++|||++|+++ .+|..+..+++|++|+++
T Consensus       376 L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~  452 (520)
T 2z7x_B          376 LQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVA  452 (520)
T ss_dssp             CCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECC
T ss_pred             CCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECC
Confidence            999999999999768875 77899999999999999988876 44  79999999999999 888888899999999999


Q ss_pred             cCcceeeCCCC--CCCCCcCc-cccCCCCCCC
Q 004747          640 YNSFSGFVPWK--QGYQKFPG-AFAGNPNLCL  668 (732)
Q Consensus       640 ~N~l~g~ip~~--~~~~~~~~-~~~gn~~lcg  668 (732)
                      +|++++ +|..  ..+..+.. .+.|||..|.
T Consensus       453 ~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~  483 (520)
T 2z7x_B          453 SNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCS  483 (520)
T ss_dssp             SSCCCC-CCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             CCcCCc-cCHHHhccCCcccEEECcCCCCccc
Confidence            999995 5653  22333444 7889998774

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=3.5e-47  Score=430.12  Aligned_cols=469  Identities=20%  Similarity=0.190  Sum_probs=346.7

Q ss_pred             CCcEEEEEcCCCCCcccccccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEECCCCCCCCCCCccccCCCCCCEEe
Q 004747           81 TGHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELI  160 (732)
Q Consensus        81 ~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~  160 (732)
                      ..+++.|++++|.+++..+..+.++++|++|++++|++++..|..|+++++|++|++++|.+++..|..|+++++|++|+
T Consensus        25 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  104 (549)
T 2z81_A           25 TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLN  104 (549)
T ss_dssp             CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEE
T ss_pred             CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEE
Confidence            35899999999999988888999999999999999999988889999999999999999999988888899999999999


Q ss_pred             CCCCCCCCCcCCchhhhcccCCcEEEeeCcccccccC-cccCCCCCCCEEEeecccCCCccccccc---cccEEECCCCc
Q 004747          161 LKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIP-ESLYYLKSLKHLDLEKNNLTGNVHDFYQ---SLLVLNLGSNR  236 (732)
Q Consensus       161 Ls~n~~~~~~~p~~~~~l~~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~---~L~~L~L~~n~  236 (732)
                      +++|+......|..++++ ++|++|++++|.+.+.+| ..+.++++|++|++++|.+++..+..+.   +|++|++++|.
T Consensus       105 Ls~n~l~~~~~~~~~~~l-~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~  183 (549)
T 2z81_A          105 LMGNPYQTLGVTSLFPNL-TNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE  183 (549)
T ss_dssp             CTTCCCSSSCSSCSCTTC-TTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSB
T ss_pred             CCCCcccccchhhhhhcc-CCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCc
Confidence            999954333567788888 899999999999555555 6899999999999999999998877654   49999999999


Q ss_pred             CccccCchhhcccccCeeeCCCCcccccc--ch-hhhccCCCCEEEeccCCCCCcCc----cccccCcCCcEEEccCCCC
Q 004747          237 FSGTLPCFAASAMSLTVLKLDNNSVVGGI--PT-CIASLQALTHLNLSHNHLNYEIS----PRLVFFEKLLLLDLSFNDL  309 (732)
Q Consensus       237 l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~--~~-~l~~l~~L~~L~L~~n~l~~~~~----~~l~~l~~L~~L~Ls~n~l  309 (732)
                      +.......+..+++|++|++++|.+++..  |. ....+++|++|++++|.+++..+    ..+..+++|+.+++++|.+
T Consensus       184 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~  263 (549)
T 2z81_A          184 SAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTL  263 (549)
T ss_dssp             STTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEE
T ss_pred             ccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccc
Confidence            86443334467899999999999998742  21 23457899999999999876544    3456788999999999987


Q ss_pred             CCCCch---hhhhcCCCCCccEEeCCCCcccCCCcccccCCCCCCEEeccCccCCCccccccCCCCCCCEEEccCCcCcc
Q 004747          310 SGPLPS---KIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSG  386 (732)
Q Consensus       310 ~~~~p~---~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~  386 (732)
                      .+....   .........+++.|++.++.+....  .+.                 .++..+...++|+.|++++|.+. 
T Consensus       264 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~--~~~-----------------~l~~~~~~~~~L~~L~l~~n~l~-  323 (549)
T 2z81_A          264 NGLGDFNPSESDVVSELGKVETVTIRRLHIPQFY--LFY-----------------DLSTVYSLLEKVKRITVENSKVF-  323 (549)
T ss_dssp             ECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGG--GSC-----------------CCCHHHHHSTTCCEEEEESSCCC-
T ss_pred             cccccccccchhhhhhhcccccccccccccchhh--hcc-----------------cchhhhhhcccceEEEeccCccc-
Confidence            753110   0111122234555555555443110  000                 01111122344555555555554 


Q ss_pred             ccCccc-cCCcCcceeecccccccccCcc---cccCCCCCcEEEcccCceeeecc--ccCCCCCCCCEEEccCCcccccc
Q 004747          387 SIPLNI-VGCFQLLALIVNNNNLSGEIQP---ELDALDSLKILDISNNQISGEIP--LTLAGLKSLEIVDFSSNNLSGSL  460 (732)
Q Consensus       387 ~~p~~~-~~~~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~L~~n~l~~~~p--~~~~~l~~L~~L~Ls~N~l~~~~  460 (732)
                      .+|..+ ..+++|+.|++++|.+.+.++.   .++.+++|++|++++|++++..+  ..+..+++|++|++++|+++ .+
T Consensus       324 ~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l  402 (549)
T 2z81_A          324 LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PM  402 (549)
T ss_dssp             CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CC
T ss_pred             cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cC
Confidence            344443 2455555555555555554432   25566777777777777764432  34667777888888888777 46


Q ss_pred             hhhhhcCCCCCEEEcccCCCccccchhhhcCCCCCEEEccCCcCcccCCcccccCccccCcCCCCCCCCCCcccCCCcee
Q 004747          461 NDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMV  540 (732)
Q Consensus       461 ~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  540 (732)
                      |..+..+++|++|++++|+++ .+|..+  .++|++|++++|++++.++                               
T Consensus       403 p~~~~~~~~L~~L~Ls~N~l~-~l~~~~--~~~L~~L~Ls~N~l~~~~~-------------------------------  448 (549)
T 2z81_A          403 PDSCQWPEKMRFLNLSSTGIR-VVKTCI--PQTLEVLDVSNNNLDSFSL-------------------------------  448 (549)
T ss_dssp             CSCCCCCTTCCEEECTTSCCS-CCCTTS--CTTCSEEECCSSCCSCCCC-------------------------------
T ss_pred             ChhhcccccccEEECCCCCcc-cccchh--cCCceEEECCCCChhhhcc-------------------------------
Confidence            666777778888888888776 334332  2578889999888875321                               


Q ss_pred             EEeEEEeecCCchhhhhhcccceEEEccCCcccccCCcccccccCCceeecccccceecCCc-ccCccCCcEEeCCCCcC
Q 004747          541 IRISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSL  619 (732)
Q Consensus       541 ~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~-l~~l~~L~~LdLs~N~l  619 (732)
                                       .++.|++|||++|+++ .+|. ...+++|++|+|++|++++.+|. +..+++|+.|++++|.+
T Consensus       449 -----------------~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~  509 (549)
T 2z81_A          449 -----------------FLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW  509 (549)
T ss_dssp             -----------------CCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCB
T ss_pred             -----------------cCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCc
Confidence                             1677889999999998 7886 56789999999999999988887 88999999999999999


Q ss_pred             cccCC
Q 004747          620 TGQIP  624 (732)
Q Consensus       620 ~~~ip  624 (732)
                      ++..|
T Consensus       510 ~~~~~  514 (549)
T 2z81_A          510 DCSCP  514 (549)
T ss_dssp             CCCHH
T ss_pred             cCCCc
Confidence            87765

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=1.8e-45  Score=423.69  Aligned_cols=510  Identities=22%  Similarity=0.191  Sum_probs=351.2

Q ss_pred             cEEEEEcCCCCCcccccccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEECCCCCCCCCCCccccCCCCCCEEeCC
Q 004747           83 HVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILK  162 (732)
Q Consensus        83 ~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls  162 (732)
                      .+++|||++|.+++..+.+|.++++|++|+|++|++++..+.+|.++++|++|+|++|++++..+..|.++++|++|+|+
T Consensus        53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls  132 (635)
T 4g8a_A           53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV  132 (635)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECT
T ss_pred             CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECC
Confidence            56667777776665555566667777777777776665556666667777777777776666555666667777777777


Q ss_pred             CCCCCCCcCCchhhhcccCCcEEEeeCccccc-ccCcccCCCCCCCEEEeecccCCCcccccccc-------ccEEECCC
Q 004747          163 GNPELGGVFPGWVGNFSMNLEKLDFSFNSFCG-EIPESLYYLKSLKHLDLEKNNLTGNVHDFYQS-------LLVLNLGS  234 (732)
Q Consensus       163 ~n~~~~~~~p~~~~~l~~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~-------L~~L~L~~  234 (732)
                      +| .+.+..+..++++ ++|++|++++|.+++ ..|..++.+++|++|++++|++++..+..+..       ...++++.
T Consensus       133 ~N-~l~~l~~~~~~~L-~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~  210 (635)
T 4g8a_A          133 ET-NLASLENFPIGHL-KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL  210 (635)
T ss_dssp             TS-CCCCSTTCCCTTC-TTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTT
T ss_pred             CC-cCCCCChhhhhcC-cccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhccc
Confidence            66 4444444556666 667777777766654 34556666667777777777666655554322       33566666


Q ss_pred             CcCccccCchhhcccccCeeeCCCCccccc-cchhhhccCCCCEEEeccCCC------CCcCccccccCcCCcEEEccCC
Q 004747          235 NRFSGTLPCFAASAMSLTVLKLDNNSVVGG-IPTCIASLQALTHLNLSHNHL------NYEISPRLVFFEKLLLLDLSFN  307 (732)
Q Consensus       235 n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~L~~n~l------~~~~~~~l~~l~~L~~L~Ls~n  307 (732)
                      |.++...+..+ ....++.+++.+|..... .+..+..+..++...+..+..      .......+.....+...++..+
T Consensus       211 n~l~~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~  289 (635)
T 4g8a_A          211 NPMNFIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA  289 (635)
T ss_dssp             CCCCEECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEE
T ss_pred             CcccccCcccc-cchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhh
Confidence            66654433333 233455566666544322 233445555555555433221      2222233444555555555544


Q ss_pred             CCCCCCchhhhhcCCCCCccEEeCCCCcccCCCcccccCCCCCCEEeccCccCCCccccccCCCCCCCEEEccCCcCccc
Q 004747          308 DLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGS  387 (732)
Q Consensus       308 ~l~~~~p~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~  387 (732)
                      .................+++.+++.++.+....  .+.....++.|++.+|.+.+..+   ..+..|+.++++.|.....
T Consensus       290 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~---~~l~~L~~l~l~~n~~~~~  364 (635)
T 4g8a_A          290 YLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVK--DFSYNFGWQHLELVNCKFGQFPT---LKLKSLKRLTFTSNKGGNA  364 (635)
T ss_dssp             CCCSCEEECTTTTGGGTTCSEEEEESCEEEECG--GGGSCCCCSEEEEESCEESSCCC---CBCTTCCEEEEESCCSCCB
T ss_pred             hhcccccchhhhhhhhccccccccccccccccc--ccccchhhhhhhcccccccCcCc---ccchhhhhcccccccCCCC
Confidence            333221111111122236788888888776332  35566789999999998875433   3467788889988887643


Q ss_pred             cCccccCCcCcceeecccccccc--cCcccccCCCCCcEEEcccCceeeeccccCCCCCCCCEEEccCCcccccch-hhh
Q 004747          388 IPLNIVGCFQLLALIVNNNNLSG--EIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLN-DAI  464 (732)
Q Consensus       388 ~p~~~~~~~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~-~~~  464 (732)
                        .....+++|+.+++++|.+..  ..+..+..+.+|+.+++..|.... .+..+..+++|+.++++.|......+ ..+
T Consensus       365 --~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~  441 (635)
T 4g8a_A          365 --FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVF  441 (635)
T ss_dssp             --CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTT
T ss_pred             --cccccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhcccccccccccc
Confidence              334578899999999998754  345566778899999999998874 45567889999999999888775543 456


Q ss_pred             hcCCCCCEEEcccCCCccccchhhhcCCCCCEEEccCCcCcccCCcccccCccccCcCCCCCCCCCCcccCCCceeEEeE
Q 004747          465 TKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRIS  544 (732)
Q Consensus       465 ~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  544 (732)
                      ..+.+++.++++.|.+.+..+..+..+++++.|++++|++.+.+++..|..                             
T Consensus       442 ~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~-----------------------------  492 (635)
T 4g8a_A          442 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE-----------------------------  492 (635)
T ss_dssp             TTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTT-----------------------------
T ss_pred             ccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhh-----------------------------
Confidence            788999999999999998888889999999999999998654433332222                             


Q ss_pred             EEeecCCchhhhhhcccceEEEccCCcccccCCcccccccCCceeecccccceecCCc-ccCccCCcEEeCCCCcCcccC
Q 004747          545 VTAIDTNELSFNYQLFSAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQI  623 (732)
Q Consensus       545 ~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~-l~~l~~L~~LdLs~N~l~~~i  623 (732)
                                    +++|++|||++|++++.+|..+.++++|++|+|++|+|++.+|. +..+++|++|||++|+|++.+
T Consensus       493 --------------l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~  558 (635)
T 4g8a_A          493 --------------LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSK  558 (635)
T ss_dssp             --------------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCC
T ss_pred             --------------ccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCC
Confidence                          77899999999999988899999999999999999999988777 888999999999999999999


Q ss_pred             CcCCCCC-CCCCEEEcccCcceee
Q 004747          624 PGNISSL-QELTLLNLSYNSFSGF  646 (732)
Q Consensus       624 p~~l~~l-~~L~~L~ls~N~l~g~  646 (732)
                      |+.+..+ ++|++|++++|++.+-
T Consensus       559 ~~~l~~l~~~L~~L~L~~Np~~C~  582 (635)
T 4g8a_A          559 KQELQHFPSSLAFLNLTQNDFACT  582 (635)
T ss_dssp             SSCTTCCCTTCCEEECTTCCBCCS
T ss_pred             HHHHHhhhCcCCEEEeeCCCCccc
Confidence            9999888 6899999999999753

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=2.2e-46  Score=435.44  Aligned_cols=414  Identities=17%  Similarity=0.187  Sum_probs=312.8

Q ss_pred             CCcEEEeeCcccccccCcccCCCCCCCEEEe-ecccCCCccccc------------------------------------
Q 004747          181 NLEKLDFSFNSFCGEIPESLYYLKSLKHLDL-EKNNLTGNVHDF------------------------------------  223 (732)
Q Consensus       181 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L-s~n~l~~~~~~~------------------------------------  223 (732)
                      .++.|+|++|.+.|.+|+.++++++|++|+| ++|.++|..+..                                    
T Consensus       324 ~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l  403 (876)
T 4ecn_A          324 RVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDL  403 (876)
T ss_dssp             CEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHH
T ss_pred             CEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHH
Confidence            5667777777777777777777777777777 666554431110                                    


Q ss_pred             ------------------cccccEEECC--CCcCccccCchhhcccccCeeeCCCCcccc-----------------ccc
Q 004747          224 ------------------YQSLLVLNLG--SNRFSGTLPCFAASAMSLTVLKLDNNSVVG-----------------GIP  266 (732)
Q Consensus       224 ------------------~~~L~~L~L~--~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~-----------------~~~  266 (732)
                                        ...++.+.+.  .|.+++ +|..++++++|++|+|++|.+++                 .+|
T Consensus       404 ~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP  482 (876)
T 4ecn_A          404 LQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYEN  482 (876)
T ss_dssp             HHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTT
T ss_pred             HHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCC
Confidence                              0113333333  377777 78888888888888888888887                 377


Q ss_pred             hhhh--ccCCCCEEEeccCCCCCcCccccccCcCCcEEEccCCC-CCC-CCchhhhhcC----CCCCccEEeCCCCcccC
Q 004747          267 TCIA--SLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFND-LSG-PLPSKIAQTT----EKAGLVLLDLSHNRFSG  338 (732)
Q Consensus       267 ~~l~--~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~-l~~-~~p~~~~~l~----~~~~L~~L~Ls~n~l~~  338 (732)
                      ..++  ++++|++|++++|.+.+.+|..+.++++|+.|++++|+ ++| .+|..+..+.    ..++|+.|++++|.++ 
T Consensus       483 ~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-  561 (876)
T 4ecn_A          483 EELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-  561 (876)
T ss_dssp             SCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-
T ss_pred             hhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-
Confidence            7766  88888888888888888888888888888888888887 887 7787766543    4457888888888888 


Q ss_pred             CCcc--cccCCCCCCEEeccCccCCCccccccCCCCCCCEEEccCCcCccccCccccCCcC-cceeecccccccccCccc
Q 004747          339 EIPL--KITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQ-LLALIVNNNNLSGEIQPE  415 (732)
Q Consensus       339 ~~p~--~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~-L~~L~l~~n~l~~~~~~~  415 (732)
                      .+|.  .+..+++|+.|++++|.++ .+| .++.+++|+.|++++|.++ .+|..+..+++ |+.|++++|.+. .+|..
T Consensus       562 ~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~  637 (876)
T 4ecn_A          562 EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNI  637 (876)
T ss_dssp             BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSC
T ss_pred             ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchh
Confidence            7887  7888888888888888888 777 7888888888888888888 78888888888 888888888888 66666


Q ss_pred             ccCCCC--CcEEEcccCceeeeccccC---C--CCCCCCEEEccCCcccccchhhhhcCCCCCEEEcccCCCccccchhh
Q 004747          416 LDALDS--LKILDISNNQISGEIPLTL---A--GLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWL  488 (732)
Q Consensus       416 ~~~l~~--L~~L~L~~n~l~~~~p~~~---~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~  488 (732)
                      +..++.  |+.|++++|++.+.+|...   .  .+++|+.|++++|.++...+..+..+++|+.|+|++|++. .+|..+
T Consensus       638 ~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~  716 (876)
T 4ecn_A          638 FNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENS  716 (876)
T ss_dssp             CCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTS
T ss_pred             hhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHH
Confidence            666544  8888888888887655322   2  3457888888888888444444457888888888888888 666554


Q ss_pred             hcC--------CCCCEEEccCCcCcccCCcccccCccccCcCCCCCCCCCCcccCCCceeEEeEEEeecCCchhhhhhcc
Q 004747          489 FSF--------QAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLF  560 (732)
Q Consensus       489 ~~~--------~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  560 (732)
                      ...        ++|+.|++++|+++ .+|..++.                                          ..++
T Consensus       717 ~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~------------------------------------------~~l~  753 (876)
T 4ecn_A          717 LKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRA------------------------------------------TTLP  753 (876)
T ss_dssp             SSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGST------------------------------------------TTCT
T ss_pred             hccccccccccCCccEEECCCCCCc-cchHHhhh------------------------------------------ccCC
Confidence            432        27888888888887 56654420                                          0267


Q ss_pred             cceEEEccCCcccccCCcccccccCCceeeccc------ccceecCCc-ccCccCCcEEeCCCCcCcccCCcCCCCCCCC
Q 004747          561 SAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSF------NFLDGQVPG-LYRLRSLRALDLSHNSLTGQIPGNISSLQEL  633 (732)
Q Consensus       561 ~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~------N~l~~~ip~-l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L  633 (732)
                      +|+.|+|++|++++ +|..++++++|+.|+|++      |++.+.+|. +.++++|+.|+|++|++ +.+|..+.  ++|
T Consensus       754 ~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L  829 (876)
T 4ecn_A          754 YLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQL  829 (876)
T ss_dssp             TCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSS
T ss_pred             CcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCC
Confidence            78888888888886 788888888888888866      778888887 88888888888888888 68887765  588


Q ss_pred             CEEEcccCcceeeCC
Q 004747          634 TLLNLSYNSFSGFVP  648 (732)
Q Consensus       634 ~~L~ls~N~l~g~ip  648 (732)
                      +.||+++|++...-+
T Consensus       830 ~~LdLs~N~l~~i~~  844 (876)
T 4ecn_A          830 YILDIADNPNISIDV  844 (876)
T ss_dssp             CEEECCSCTTCEEEC
T ss_pred             CEEECCCCCCCccCh
Confidence            888888888876544

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=1.2e-44  Score=409.98  Aligned_cols=455  Identities=20%  Similarity=0.205  Sum_probs=315.6

Q ss_pred             EEEEcCCCCCcccccccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEECCCCCCCCCCCccccCCCCCCEEeCCCC
Q 004747           85 VSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGN  164 (732)
Q Consensus        85 ~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n  164 (732)
                      +.++++++++++ +|..+.  ++|++|++++|.+++..+..|.++++|++|+|++|++++..|.+|.++++|++|+|++|
T Consensus        34 ~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N  110 (562)
T 3a79_B           34 SMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN  110 (562)
T ss_dssp             CEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS
T ss_pred             cEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC
Confidence            778999999985 676664  89999999999999888889999999999999999999998999999999999999999


Q ss_pred             CCCCCcCCchhhhcccCCcEEEeeCccccc-ccCcccCCCCCCCEEEeecccCCCccccccccc--cEEECCCCcC--cc
Q 004747          165 PELGGVFPGWVGNFSMNLEKLDFSFNSFCG-EIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSL--LVLNLGSNRF--SG  239 (732)
Q Consensus       165 ~~~~~~~p~~~~~l~~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~L--~~L~L~~n~l--~~  239 (732)
                      + ++ .+|..  .+ ++|++|++++|.+++ .+|..++++++|++|++++|.+++.....+.+|  ++|++++|.+  ++
T Consensus       111 ~-l~-~lp~~--~l-~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~L~~n~l~~~~  185 (562)
T 3a79_B          111 R-LQ-NISCC--PM-ASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKG  185 (562)
T ss_dssp             C-CC-EECSC--CC-TTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTSCEEEEEEEESSCCCCS
T ss_pred             c-CC-ccCcc--cc-ccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCchhhhhhceeeEEEeecccccccc
Confidence            5 44 56665  56 899999999999987 456889999999999999999886544444444  6666666666  55


Q ss_pred             ccCchhhccc--ccCeeeCCCCccccccch-hhhccCCCCEEEeccCCCC----CcCccccccCcCCcEEEccCCCCCCC
Q 004747          240 TLPCFAASAM--SLTVLKLDNNSVVGGIPT-CIASLQALTHLNLSHNHLN----YEISPRLVFFEKLLLLDLSFNDLSGP  312 (732)
Q Consensus       240 ~~~~~~~~~~--~L~~L~Ls~n~l~~~~~~-~l~~l~~L~~L~L~~n~l~----~~~~~~l~~l~~L~~L~Ls~n~l~~~  312 (732)
                      ..|..+..+.  .+ .+++++|.+.+.++. .+..+++|+.+++++|...    ......+..++               
T Consensus       186 ~~~~~l~~l~~~~l-~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~---------------  249 (562)
T 3a79_B          186 GETESLQIPNTTVL-HLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGP---------------  249 (562)
T ss_dssp             SSCCEEEECCEEEE-EEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCS---------------
T ss_pred             cCcccccccCcceE-EEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccC---------------
Confidence            5555544432  12 334455554443332 2233444555555444310    00111233333               


Q ss_pred             CchhhhhcCCCCCccEEeCCCCcccCC----CcccccCCCCCCEEeccCccCCCcccccc-----CCCCCCCEEEccCCc
Q 004747          313 LPSKIAQTTEKAGLVLLDLSHNRFSGE----IPLKITELKSLQALFLSNNLLIGEIPARI-----GNLTYLQVIDLSHNM  383 (732)
Q Consensus       313 ~p~~~~~l~~~~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l-----~~l~~L~~L~Ls~n~  383 (732)
                                  .|+.++++++.+.+.    ++..+ ..++|++|++++|.++|.+|..+     .+++.|+.++++.+.
T Consensus       250 ------------~L~~L~L~~~~l~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~  316 (562)
T 3a79_B          250 ------------TLLNVTLQHIETTWKCSVKLFQFF-WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQV  316 (562)
T ss_dssp             ------------SCEEEEEEEEEECHHHHHHHHHHH-TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECC
T ss_pred             ------------cceEEEecCCcCcHHHHHHHHHhh-hcccccEEEEeccEeeccccchhhhcccccchheehhhcccce
Confidence                        444455444444321    11111 22467777777777776666665     555666666666665


Q ss_pred             CccccCcc-ccCCcCcceeecccccccccCcccccCCCCCcEEEcccCceeeeccccCCCCCCCCEEEccCCcccccchh
Q 004747          384 LSGSIPLN-IVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLND  462 (732)
Q Consensus       384 l~~~~p~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~  462 (732)
                      +  .+|.. +..                     +....+|+.|++++|.+....  ....+++|++|++++|++++.+|.
T Consensus       317 ~--~~p~~~~~~---------------------~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~  371 (562)
T 3a79_B          317 F--LFSKEALYS---------------------VFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQ  371 (562)
T ss_dssp             C--SSCHHHHHH---------------------HHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTT
T ss_pred             e--ecChhhhhh---------------------hhccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhh
Confidence            5  33321 110                     011135666666666654221  124667777777777777776677


Q ss_pred             hhhcCCCCCEEEcccCCCcc--ccchhhhcCCCCCEEEccCCcCcccCCcccccCccccCcCCCCCCCCCCcccCCCcee
Q 004747          463 AITKWTNLKYFSIARNKLSG--NLPNWLFSFQAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMV  540 (732)
Q Consensus       463 ~~~~l~~L~~L~L~~N~l~~--~~p~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  540 (732)
                      ++..+++|++|++++|++++  .+|..+..+++|++|++++|++++.+|...|..                         
T Consensus       372 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~-------------------------  426 (562)
T 3a79_B          372 GCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAW-------------------------  426 (562)
T ss_dssp             TCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCC-------------------------
T ss_pred             hhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcC-------------------------
Confidence            77777777777777777775  335567777888888888888876666554332                         


Q ss_pred             EEeEEEeecCCchhhhhhcccceEEEccCCcccccCCcccccccCCceeecccccceecCCc-ccCccCCcEEeCCCCcC
Q 004747          541 IRISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSL  619 (732)
Q Consensus       541 ~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~-l~~l~~L~~LdLs~N~l  619 (732)
                                        +++|+.|++++|++++.+|..+.  ++|++|+|++|+++ .+|. ++.+++|++|||++|++
T Consensus       427 ------------------l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l  485 (562)
T 3a79_B          427 ------------------AESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQL  485 (562)
T ss_dssp             ------------------CTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCC
T ss_pred             ------------------cccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCC
Confidence                              67788899999999887777664  78999999999998 5665 77999999999999999


Q ss_pred             cccCCcC-CCCCCCCCEEEcccCcceeeCC
Q 004747          620 TGQIPGN-ISSLQELTLLNLSYNSFSGFVP  648 (732)
Q Consensus       620 ~~~ip~~-l~~l~~L~~L~ls~N~l~g~ip  648 (732)
                      ++ +|.. +..+++|++|++++|++.+..|
T Consensus       486 ~~-l~~~~~~~l~~L~~L~l~~N~~~c~c~  514 (562)
T 3a79_B          486 KS-VPDGVFDRLTSLQYIWLHDNPWDCTCP  514 (562)
T ss_dssp             CC-CCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred             CC-CCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence            94 5554 8999999999999999998765

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=4.8e-44  Score=404.97  Aligned_cols=450  Identities=21%  Similarity=0.162  Sum_probs=298.4

Q ss_pred             CCCEEECCCCCCCCcccccccCCCCCCEEECCCCCCCCCCCccccCCCCCCEEeCCCCCCCCCcCCchhhhcccCCcEEE
Q 004747          107 FLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLD  186 (732)
Q Consensus       107 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~~L~~L~  186 (732)
                      ..+++++++|++++ +|..+.  ++|++|++++|.+++..|.+|.++++|++|+|++| .+++..|..+..+ ++|++|+
T Consensus        32 ~~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l-~~L~~L~  106 (562)
T 3a79_B           32 LESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHN-RIRSLDFHVFLFN-QDLEYLD  106 (562)
T ss_dssp             -CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSC-CCCEECTTTTTTC-TTCCEEE
T ss_pred             CCcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCC-CCCcCCHHHhCCC-CCCCEEE
Confidence            34888888888885 665554  78888888888888777778888888888887777 4555555555555 5666666


Q ss_pred             eeCcccccccCcccCCCCCCCEEEeecccCCCccccccccccEEECCCCcCccccCchhhcccccCeeeCCCCccccccc
Q 004747          187 FSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIP  266 (732)
Q Consensus       187 Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~  266 (732)
                      +++|.++ .+|..  .+++|++|++++|.+++.                    .+|..++++++|++|++++|.+.+.  
T Consensus       107 Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l--------------------~~p~~~~~l~~L~~L~L~~n~l~~~--  161 (562)
T 3a79_B          107 VSHNRLQ-NISCC--PMASLRHLDLSFNDFDVL--------------------PVCKEFGNLTKLTFLGLSAAKFRQL--  161 (562)
T ss_dssp             CTTSCCC-EECSC--CCTTCSEEECCSSCCSBC--------------------CCCGGGGGCTTCCEEEEECSBCCTT--
T ss_pred             CCCCcCC-ccCcc--ccccCCEEECCCCCcccc--------------------CchHhhcccCcccEEecCCCccccC--
Confidence            6666665 34443  455555555555544321                    2345666667777777777766542  


Q ss_pred             hhhhccCCC--CEEEeccCCC--CCcCccccccCc--CCcEEEccCCCCCCCCchhhhhcCCCCCccEEeCCCCcccCCC
Q 004747          267 TCIASLQAL--THLNLSHNHL--NYEISPRLVFFE--KLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEI  340 (732)
Q Consensus       267 ~~l~~l~~L--~~L~L~~n~l--~~~~~~~l~~l~--~L~~L~Ls~n~l~~~~p~~~~~l~~~~~L~~L~Ls~n~l~~~~  340 (732)
                       .+..+++|  ++|++++|.+  ++..|..+..+.  .+ .+++++|.+.+.++..                        
T Consensus       162 -~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l-~l~l~~n~~~~~~~~~------------------------  215 (562)
T 3a79_B          162 -DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVL-HLVFHPNSLFSVQVNM------------------------  215 (562)
T ss_dssp             -TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEE-EEEECSSSCCCCCCEE------------------------
T ss_pred             -chhhhhhceeeEEEeecccccccccCcccccccCcceE-EEEecCccchhhhhhh------------------------
Confidence             24444444  7777777766  555555555433  22 3345555544433321                        


Q ss_pred             cccccCCCCCCEEeccCcc-----CCCccccccCCCCCCCEEEccCCcCcccc----CccccCCcCcceeeccccccccc
Q 004747          341 PLKITELKSLQALFLSNNL-----LIGEIPARIGNLTYLQVIDLSHNMLSGSI----PLNIVGCFQLLALIVNNNNLSGE  411 (732)
Q Consensus       341 p~~l~~l~~L~~L~Ls~n~-----l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~----p~~~~~~~~L~~L~l~~n~l~~~  411 (732)
                        .+..+++|+.+++++|.     +.+ ....+..+++|+.++++++.+.+..    +.. ....+|++|++++|.+.|.
T Consensus       216 --~~~~l~~L~~L~l~~n~~~~~~l~~-~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~  291 (562)
T 3a79_B          216 --SVNALGHLQLSNIKLNDENCQRLMT-FLSELTRGPTLLNVTLQHIETTWKCSVKLFQF-FWPRPVEYLNIYNLTITER  291 (562)
T ss_dssp             --EESSEEEEEEEEEECCSTTHHHHHH-HHHHHHSCSSCEEEEEEEEEECHHHHHHHHHH-HTTSSEEEEEEEEEEECSC
T ss_pred             --cccccceEEEecccccccccchHHH-HHHHHhccCcceEEEecCCcCcHHHHHHHHHh-hhcccccEEEEeccEeecc
Confidence              22333444444444442     111 1123444555555555554443211    111 1223666666666666666


Q ss_pred             Ccccc-----cCCCCCcEEEcccCceeeecc-ccCC---CCCCCCEEEccCCcccccchhhhhcCCCCCEEEcccCCCcc
Q 004747          412 IQPEL-----DALDSLKILDISNNQISGEIP-LTLA---GLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSG  482 (732)
Q Consensus       412 ~~~~~-----~~l~~L~~L~L~~n~l~~~~p-~~~~---~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  482 (732)
                      +|..+     ..++.|+.++++.+.+  .+| ..+.   ...+|++|++++|.+....  ....+++|++|++++|.+++
T Consensus       292 ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~  367 (562)
T 3a79_B          292 IDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTD  367 (562)
T ss_dssp             CCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCT
T ss_pred             ccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCcccc
Confidence            66555     5666666677776666  334 2221   1267999999999987432  12678999999999999999


Q ss_pred             ccchhhhcCCCCCEEEccCCcCcccC--CcccccCccccCcCCCCCCCCCCcccCCCceeEEeEEEeecCCchhhhhhcc
Q 004747          483 NLPNWLFSFQAIQMMDFSTNKFMGFI--PDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLF  560 (732)
Q Consensus       483 ~~p~~~~~~~~L~~L~ls~N~l~~~~--p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  560 (732)
                      .+|..+..+++|++|++++|++++..  |..                                            ...++
T Consensus       368 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~--------------------------------------------~~~l~  403 (562)
T 3a79_B          368 SVFQGCSTLKRLQTLILQRNGLKNFFKVALM--------------------------------------------TKNMS  403 (562)
T ss_dssp             TTTTTCCSCSSCCEEECCSSCCCBTTHHHHT--------------------------------------------TTTCT
T ss_pred             chhhhhcccCCCCEEECCCCCcCCcccchhh--------------------------------------------hcCCC
Confidence            89999999999999999999997521  111                                            12378


Q ss_pred             cceEEEccCCcccccCCcc-cccccCCceeecccccceecCCc-ccCccCCcEEeCCCCcCcccCCcCCCCCCCCCEEEc
Q 004747          561 SAVGMDLSDNLLHGTIPKG-LFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNL  638 (732)
Q Consensus       561 ~L~~LdLs~N~l~g~ip~~-l~~l~~L~~L~Ls~N~l~~~ip~-l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~l  638 (732)
                      +|+.||+++|++++.+|.. +..+++|++|++++|++++.+|. +.  ++|++|||++|+++ .+|..+..+++|++|++
T Consensus       404 ~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L  480 (562)
T 3a79_B          404 SLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNV  480 (562)
T ss_dssp             TCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEEC
T ss_pred             CCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEEC
Confidence            8999999999999867765 77899999999999999987776 43  79999999999999 78877779999999999


Q ss_pred             ccCcceeeCCCC--CCCCCcCc-cccCCCCCCC
Q 004747          639 SYNSFSGFVPWK--QGYQKFPG-AFAGNPNLCL  668 (732)
Q Consensus       639 s~N~l~g~ip~~--~~~~~~~~-~~~gn~~lcg  668 (732)
                      ++|++++ +|..  ..+..+.. .+.|||..|.
T Consensus       481 ~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~  512 (562)
T 3a79_B          481 ASNQLKS-VPDGVFDRLTSLQYIWLHDNPWDCT  512 (562)
T ss_dssp             CSSCCCC-CCTTSTTTCTTCCCEECCSCCBCCC
T ss_pred             CCCCCCC-CCHHHHhcCCCCCEEEecCCCcCCC
Confidence            9999995 5543  23334444 7899998874

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=3.4e-42  Score=396.41  Aligned_cols=547  Identities=19%  Similarity=0.159  Sum_probs=400.0

Q ss_pred             CCCCCCCCCCCCCCccceeecCCCCcEEEEEcCCCCCcccccccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEEC
Q 004747           58 TQKLSSWVGSNCTNWTGVACNFQTGHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDL  137 (732)
Q Consensus        58 ~~~l~~w~~~~~c~w~gv~c~~~~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  137 (732)
                      ...+++|...-+..|..-.|.....   ..+-++.+++ .+|..+.  +++++|||++|+|++..+.+|.++++|++|||
T Consensus        10 ~~~~~~~~~~~p~~~~~c~~~~~~~---~~~c~~~~l~-~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~L   83 (635)
T 4g8a_A           10 DDKLAAANSSIPESWEPCVEVVPNI---TYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDL   83 (635)
T ss_dssp             ---------------CCSEEEETTT---EEECTTSCCS-SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred             cchhhcccCCCCCCCCCccccCCCC---EEECCCCCcC-ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEEC
Confidence            3445566443334454333321111   1233344454 4565553  47999999999999888889999999999999


Q ss_pred             CCCCCCCCCCccccCCCCCCEEeCCCCCCCCCcCCchhhhcccCCcEEEeeCcccccccCcccCCCCCCCEEEeecccCC
Q 004747          138 SYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLT  217 (732)
Q Consensus       138 s~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~  217 (732)
                      ++|+|+++.|.+|.++++|++|+|++| .+++..+..+.++ ++|++|++++|.+++..+..|+++++|++|++++|.++
T Consensus        84 s~N~i~~i~~~~f~~L~~L~~L~Ls~N-~l~~l~~~~f~~L-~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~  161 (635)
T 4g8a_A           84 SRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGL-SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ  161 (635)
T ss_dssp             TTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECGGGGTTC-TTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCC
T ss_pred             CCCcCCCcChhHhcCCCCCCEEEccCC-cCCCCCHHHhcCC-CCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccc
Confidence            999999888899999999999999999 5666667778888 89999999999999877778999999999999999998


Q ss_pred             Cc-cccc---cccccEEECCCCcCccccCchhhcccccC----eeeCCCCccccccchhhhccCCCCEEEeccCCCCCc-
Q 004747          218 GN-VHDF---YQSLLVLNLGSNRFSGTLPCFAASAMSLT----VLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYE-  288 (732)
Q Consensus       218 ~~-~~~~---~~~L~~L~L~~n~l~~~~~~~~~~~~~L~----~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-  288 (732)
                      +. .+..   +..|++|++++|++++..+..+..+.+++    .++++.|.+....+..+ ....++.+++.+|..... 
T Consensus       162 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~-~~~~~~~l~l~~n~~~~~~  240 (635)
T 4g8a_A          162 SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLHKLTLRNNFDSLNV  240 (635)
T ss_dssp             CCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTT-TTCEEEEEEEESCCSSHHH
T ss_pred             cCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccc-cchhhhhhhhhcccccccc
Confidence            64 3443   45699999999999988888877766554    57788888876555443 344567888888765533 


Q ss_pred             CccccccCcCCcEEEccCCCC------CCCCchhhhhcCCCCCccEEeCCCCccc---CCCcccccCCCCCCEEeccCcc
Q 004747          289 ISPRLVFFEKLLLLDLSFNDL------SGPLPSKIAQTTEKAGLVLLDLSHNRFS---GEIPLKITELKSLQALFLSNNL  359 (732)
Q Consensus       289 ~~~~l~~l~~L~~L~Ls~n~l------~~~~p~~~~~l~~~~~L~~L~Ls~n~l~---~~~p~~l~~l~~L~~L~Ls~n~  359 (732)
                      .+..+..+..++...+..+..      .......+....   .+...++..+...   ...+..+....+++.+++.++.
T Consensus       241 ~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~---~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~  317 (635)
T 4g8a_A          241 MKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLC---NLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVT  317 (635)
T ss_dssp             HHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGG---GSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCE
T ss_pred             cchhhcCCccccccccccccccccccccccccccccccc---chhhhhhhhhhhcccccchhhhhhhhcccccccccccc
Confidence            234456677777666543322      212222222222   3444444433222   1233445667788899988888


Q ss_pred             CCCccccccCCCCCCCEEEccCCcCccccCccccCCcCcceeecccccccccCcccccCCCCCcEEEcccCceee--ecc
Q 004747          360 LIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISG--EIP  437 (732)
Q Consensus       360 l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~p  437 (732)
                      +.+..  .+.....++.|++.+|.+.+..+   ..+..|+.+.+..|......  ....+++|+.|++++|.+..  ..+
T Consensus       318 ~~~~~--~~~~~~~L~~L~l~~~~~~~~~~---~~l~~L~~l~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~  390 (635)
T 4g8a_A          318 IERVK--DFSYNFGWQHLELVNCKFGQFPT---LKLKSLKRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKGCCS  390 (635)
T ss_dssp             EEECG--GGGSCCCCSEEEEESCEESSCCC---CBCTTCCEEEEESCCSCCBC--CCCBCTTCCEEECCSSCCBEEEECC
T ss_pred             ccccc--ccccchhhhhhhcccccccCcCc---ccchhhhhcccccccCCCCc--ccccccccccchhhccccccccccc
Confidence            76432  35667789999999998875443   24567888888888776543  34578899999999998753  345


Q ss_pred             ccCCCCCCCCEEEccCCcccccchhhhhcCCCCCEEEcccCCCccccc-hhhhcCCCCCEEEccCCcCcccCCcccccCc
Q 004747          438 LTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLP-NWLFSFQAIQMMDFSTNKFMGFIPDGNFNFS  516 (732)
Q Consensus       438 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~  516 (732)
                      ..+..+.+|+++++..|.+.. .+..+..+++|+.+++.+|+.....+ ..+..+++++.+++++|.+.+..|... .  
T Consensus       391 ~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~-~--  466 (635)
T 4g8a_A          391 QSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF-N--  466 (635)
T ss_dssp             HHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTT-T--
T ss_pred             cchhhhhhhhhhhcccccccc-ccccccccccccchhhhhcccccccccccccccccccccccccccccccccccc-c--
Confidence            556678889999999988874 44567788999999999888775554 457788999999999999876555432 1  


Q ss_pred             cccCcCCCCCCCCCCcccCCCceeEEeEEEeecCCchhhhhhcccceEEEccCCccc-ccCCcccccccCCceeeccccc
Q 004747          517 LNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVGMDLSDNLLH-GTIPKGLFQLQGLEYLNLSFNF  595 (732)
Q Consensus       517 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~-g~ip~~l~~l~~L~~L~Ls~N~  595 (732)
                                                               .++.++.|++++|++. +.+|..+..+++|++|||++|+
T Consensus       467 -----------------------------------------~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~  505 (635)
T 4g8a_A          467 -----------------------------------------GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ  505 (635)
T ss_dssp             -----------------------------------------TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred             -----------------------------------------cchhhhhhhhhhcccccccCchhhhhccccCEEECCCCc
Confidence                                                     2678899999999854 4578889999999999999999


Q ss_pred             ceecCCc-ccCccCCcEEeCCCCcCcccCCcCCCCCCCCCEEEcccCcceeeCCCCCC-C-CCcCc-cccCCCCCCC
Q 004747          596 LDGQVPG-LYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVPWKQG-Y-QKFPG-AFAGNPNLCL  668 (732)
Q Consensus       596 l~~~ip~-l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~-~-~~~~~-~~~gn~~lcg  668 (732)
                      +++.+|. +.++++|++|+|++|+|++..|..|..+++|++||+++|+|++.+|...+ + .++.. .+.|||.-|.
T Consensus       506 L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~  582 (635)
T 4g8a_A          506 LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT  582 (635)
T ss_dssp             CCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCS
T ss_pred             cCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCccc
Confidence            9999888 89999999999999999999999999999999999999999999887543 2 23444 7899999984

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=6.3e-43  Score=382.78  Aligned_cols=283  Identities=22%  Similarity=0.271  Sum_probs=143.6

Q ss_pred             cCCCCCCEEECCCCCCCCcccccccCCCCCCEEECCCCCCCCCCCccccCCCCCCEEeCCCCCCCCCcCCchhhhcccCC
Q 004747          103 CKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNL  182 (732)
Q Consensus       103 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~~L  182 (732)
                      .+.++|++|++++|.+ +.+|.+++++++|++|++++|.+.|.+|.+++++++|+++++.+|..             .++
T Consensus         8 ~~~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~-------------~~l   73 (454)
T 1jl5_A            8 VSNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD-------------RQA   73 (454)
T ss_dssp             ---------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH-------------HTC
T ss_pred             cccccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc-------------cCC
Confidence            3457888888888888 68888888888888888888888888888888888776666655511             456


Q ss_pred             cEEEeeCcccccccCcccCCCCCCCEEEeecccCCCccccccccccEEECCCCcCccccCchhhcccccCeeeCCCCccc
Q 004747          183 EKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVV  262 (732)
Q Consensus       183 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~  262 (732)
                      ++|++++|.+++ +|..   .++|++|++++|.+++ +|..+.+|++|++++|++++ ++..   .++|++|++++|.++
T Consensus        74 ~~L~l~~~~l~~-lp~~---~~~L~~L~l~~n~l~~-lp~~~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~  144 (454)
T 1jl5_A           74 HELELNNLGLSS-LPEL---PPHLESLVASCNSLTE-LPELPQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLE  144 (454)
T ss_dssp             SEEECTTSCCSC-CCSC---CTTCSEEECCSSCCSS-CCCCCTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCS
T ss_pred             CEEEecCCcccc-CCCC---cCCCCEEEccCCcCCc-cccccCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCC
Confidence            777777777764 3331   3567777777777766 44444556666666666654 2211   145666666666665


Q ss_pred             cccchhhhccCCCCEEEeccCCCCCcCccccccCcCCcEEEccCCCCCCCCchhhhhcCCCCCccEEeCCCCcccCCCcc
Q 004747          263 GGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPL  342 (732)
Q Consensus       263 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~L~~L~Ls~n~l~~~~p~  342 (732)
                      + +| .++++++|++|++++|++++ +|..+   ++|++|++++|++++ +| .+..++   +|++|++++|.+++ +|.
T Consensus       145 ~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~---~L~~L~l~~N~l~~-l~~  212 (454)
T 1jl5_A          145 K-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLP---FLTAIYADNNSLKK-LPD  212 (454)
T ss_dssp             S-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCT---TCCEEECCSSCCSS-CCC
T ss_pred             C-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCC---CCCEEECCCCcCCc-CCC
Confidence            4 44 35666666666666666653 33322   355666666665554 33 233333   55666666665553 332


Q ss_pred             cccCCCCCCEEeccCccCCCccccccCCCCCCCEEEccCCcCccccCccccCCcCcceeecccccccccCcccccCCCCC
Q 004747          343 KITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSL  422 (732)
Q Consensus       343 ~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L  422 (732)
                      ..   ++|++|++++|.++ .+|. ++.+++|++|++++|++++ +|..   .++|+.|++++|.+.+ +|..   .++|
T Consensus       213 ~~---~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~---~~~L  279 (454)
T 1jl5_A          213 LP---LSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPEL---PQSL  279 (454)
T ss_dssp             CC---TTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCC---CTTC
T ss_pred             Cc---CcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCcc---cCcC
Confidence            21   35556666666555 4442 5555566666666655553 2221   1344444444444443 1211   2344


Q ss_pred             cEEEcccCcee
Q 004747          423 KILDISNNQIS  433 (732)
Q Consensus       423 ~~L~L~~n~l~  433 (732)
                      +.|++++|+++
T Consensus       280 ~~L~ls~N~l~  290 (454)
T 1jl5_A          280 TFLDVSENIFS  290 (454)
T ss_dssp             CEEECCSSCCS
T ss_pred             CEEECcCCccC
Confidence            55555555444

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=8.7e-40  Score=360.55  Aligned_cols=367  Identities=20%  Similarity=0.159  Sum_probs=260.8

Q ss_pred             CCCCEEECCCCCCCCcccccccCCCCCCEEECCCCCCCCCC-CccccCCCCCCEEeCCCCCCCCCcCCchhhhcccCCcE
Q 004747          106 SFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVV-PDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEK  184 (732)
Q Consensus       106 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~~L~~  184 (732)
                      ++|++|+|++|.+++..|..|+++++|++|++++|.+.+.+ |..|.++++|++|+|++| .+.+..|..++++ ++|++
T Consensus        30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l-~~L~~  107 (455)
T 3v47_A           30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN-QFLQLETGAFNGL-ANLEV  107 (455)
T ss_dssp             TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC-TTCEECTTTTTTC-TTCCE
T ss_pred             CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCC-ccCccChhhccCc-ccCCE
Confidence            78999999999998888888999999999999999887554 567888888888888888 4566667777777 78888


Q ss_pred             EEeeCcccccccCcc--cCCCCCCCEEEeecccCCCccccccccccEEECCCCcCccccCch-hhcccccCeeeCCCCcc
Q 004747          185 LDFSFNSFCGEIPES--LYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCF-AASAMSLTVLKLDNNSV  261 (732)
Q Consensus       185 L~Ls~n~l~~~~p~~--l~~l~~L~~L~Ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~-~~~~~~L~~L~Ls~n~l  261 (732)
                      |++++|.+++..|..  +.++++|++|++++|.+++.                     .|.. +..+++|++|++++|.+
T Consensus       108 L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~---------------------~~~~~~~~l~~L~~L~L~~n~l  166 (455)
T 3v47_A          108 LTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKI---------------------QPASFFLNMRRFHVLDLTFNKV  166 (455)
T ss_dssp             EECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSC---------------------CCCGGGGGCTTCCEEECTTCCB
T ss_pred             EeCCCCCCCccccCcccccCcccCCEEECCCCccCcc---------------------CcccccCCCCcccEEeCCCCcc
Confidence            888888877655444  77777777777777766543                     3333 55666677777777777


Q ss_pred             ccccchhhhcc--CCCCEEEeccCCCCCcCccc--------cccCcCCcEEEccCCCCCCCCchhhhhcCCCCCccEEeC
Q 004747          262 VGGIPTCIASL--QALTHLNLSHNHLNYEISPR--------LVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDL  331 (732)
Q Consensus       262 ~~~~~~~l~~l--~~L~~L~L~~n~l~~~~~~~--------l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~L~~L~L  331 (732)
                      .+..+..+..+  .+|+.|++++|.+.+..+..        +..+++|++|++++|.+++..|..+.......+|+.|++
T Consensus       167 ~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l  246 (455)
T 3v47_A          167 KSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLIL  246 (455)
T ss_dssp             SCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEEC
T ss_pred             cccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEee
Confidence            66666666555  56777777777766543332        335678888888888888877777777655558888888


Q ss_pred             CCCcccCCCcccccCCCCCCEEeccCccCCCccccccC--CCCCCCEEEccCCcCccccCccccCCcCcceeeccccccc
Q 004747          332 SHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIG--NLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLS  409 (732)
Q Consensus       332 s~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~--~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~  409 (732)
                      ++|.+.+....              .+.+.+..+..+.  ..++|++|++++|.+++..|..+..+++|+.|++++|.+.
T Consensus       247 ~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~  312 (455)
T 3v47_A          247 SNSYNMGSSFG--------------HTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN  312 (455)
T ss_dssp             TTCTTTSCCTT--------------CCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCC
T ss_pred             ccccccccccc--------------hhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCccc
Confidence            88876543110              1111111111111  2356666666666666666666666666777777777766


Q ss_pred             ccCcccccCCCCCcEEEcccCceeeeccccCCCCCCCCEEEccCCcccccchhhhhcCCCCCEEEcccCCCccccchhhh
Q 004747          410 GEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLF  489 (732)
Q Consensus       410 ~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~  489 (732)
                      +..+..+..+++|++|++++|.+++..|..+.++++|++|++++|++++..|.++..+++|++|++++|++++..+..+.
T Consensus       313 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~  392 (455)
T 3v47_A          313 KIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFD  392 (455)
T ss_dssp             EECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTT
T ss_pred             ccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhc
Confidence            66666677777788888888877777677777778888888888888777777777788888888888888765556667


Q ss_pred             cCCCCCEEEccCCcCcccCC
Q 004747          490 SFQAIQMMDFSTNKFMGFIP  509 (732)
Q Consensus       490 ~~~~L~~L~ls~N~l~~~~p  509 (732)
                      .+++|++|++++|++++.+|
T Consensus       393 ~l~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          393 RLTSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             TCTTCCEEECCSSCBCCCTT
T ss_pred             cCCcccEEEccCCCcccCCC
Confidence            77888888888888877776

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=5.1e-40  Score=362.43  Aligned_cols=364  Identities=18%  Similarity=0.181  Sum_probs=246.6

Q ss_pred             cccEEECCCCcCccccCchhhcccccCeeeCCCCcccccc-chhhhccCCCCEEEeccCCCCCcCccccccCcCCcEEEc
Q 004747          226 SLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGI-PTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDL  304 (732)
Q Consensus       226 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L  304 (732)
                      +|++|++++|.+++..|..+.++++|++|++++|.+.+.+ +..|.++++|++|++++|.+++..|..+..+++|++|++
T Consensus        31 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  110 (455)
T 3v47_A           31 HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTL  110 (455)
T ss_dssp             TCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEEC
T ss_pred             ccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeC
Confidence            3555555555555555666666777777777777665443 445666777777777777776666666777777777777


Q ss_pred             cCCCCCCCCchh--hhhcCCCCCccEEeCCCCcccCCCccc-ccCCCCCCEEeccCccCCCccccccCCC--CCCCEEEc
Q 004747          305 SFNDLSGPLPSK--IAQTTEKAGLVLLDLSHNRFSGEIPLK-ITELKSLQALFLSNNLLIGEIPARIGNL--TYLQVIDL  379 (732)
Q Consensus       305 s~n~l~~~~p~~--~~~l~~~~~L~~L~Ls~n~l~~~~p~~-l~~l~~L~~L~Ls~n~l~~~~p~~l~~l--~~L~~L~L  379 (732)
                      ++|.+++..+..  +..+.   +|++|++++|.+++..|.. +..+++|++|++++|.+++..+..+..+  .+|+.+++
T Consensus       111 ~~n~l~~~~~~~~~~~~l~---~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l  187 (455)
T 3v47_A          111 TQCNLDGAVLSGNFFKPLT---SLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRL  187 (455)
T ss_dssp             TTSCCBTHHHHSSTTTTCT---TCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEEC
T ss_pred             CCCCCCccccCcccccCcc---cCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccc
Confidence            777766543332  33333   6777777777776555554 5666777777777777766666655544  56666777


Q ss_pred             cCCcCccccCccc--------cCCcCcceeecccccccccCcccccCC---CCCcEEEcccCceeeeccccCCCCCCCCE
Q 004747          380 SHNMLSGSIPLNI--------VGCFQLLALIVNNNNLSGEIQPELDAL---DSLKILDISNNQISGEIPLTLAGLKSLEI  448 (732)
Q Consensus       380 s~n~l~~~~p~~~--------~~~~~L~~L~l~~n~l~~~~~~~~~~l---~~L~~L~L~~n~l~~~~p~~~~~l~~L~~  448 (732)
                      ++|.+.+..+..+        ..+++|+.|++++|.+.+..+..+...   ++|+.|++++|...+...           
T Consensus       188 ~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-----------  256 (455)
T 3v47_A          188 SSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSF-----------  256 (455)
T ss_dssp             TTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCT-----------
T ss_pred             ccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecccccccccc-----------
Confidence            7766664333221        123344444444444444444333222   445555555544332110           


Q ss_pred             EEccCCcccccchhhhhc--CCCCCEEEcccCCCccccchhhhcCCCCCEEEccCCcCcccCCcccccCccccCcCCCCC
Q 004747          449 VDFSSNNLSGSLNDAITK--WTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGR  526 (732)
Q Consensus       449 L~Ls~N~l~~~~~~~~~~--l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~  526 (732)
                         ..+.+.+..+..+..  .++|++|++++|.+.+..|..+..+++|++|++++|++++..|..+ .            
T Consensus       257 ---~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~------------  320 (455)
T 3v47_A          257 ---GHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAF-W------------  320 (455)
T ss_dssp             ---TCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTT-T------------
T ss_pred             ---chhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHh-c------------
Confidence               011111111222222  3689999999999988888888999999999999999886555432 1            


Q ss_pred             CCCCCcccCCCceeEEeEEEeecCCchhhhhhcccceEEEccCCcccccCCcccccccCCceeecccccceecCCc-ccC
Q 004747          527 SMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG-LYR  605 (732)
Q Consensus       527 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~-l~~  605 (732)
                                                     .+++|++|++++|++++..|..+.++++|++|+|++|++++.+|. +..
T Consensus       321 -------------------------------~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  369 (455)
T 3v47_A          321 -------------------------------GLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLG  369 (455)
T ss_dssp             -------------------------------TCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTT
T ss_pred             -------------------------------CcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccc
Confidence                                           267889999999999988888899999999999999999988887 899


Q ss_pred             ccCCcEEeCCCCcCcccCCcCCCCCCCCCEEEcccCcceeeCCCC
Q 004747          606 LRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVPWK  650 (732)
Q Consensus       606 l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~  650 (732)
                      +++|++|+|++|++++..+..+..+++|++|++++|++++.+|..
T Consensus       370 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~  414 (455)
T 3v47_A          370 LPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI  414 (455)
T ss_dssp             CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred             cccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcc
Confidence            999999999999999887788899999999999999999999854

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=1.2e-40  Score=347.54  Aligned_cols=291  Identities=29%  Similarity=0.475  Sum_probs=213.0

Q ss_pred             CCHHhHHHHHHHHhcCCCCCCCCCCC-CCCCCCC--ccceeecCCC--CcEEEEEcCCCCCcc--cccccccCCCCCCEE
Q 004747           39 LNLEDKASLLLFKSLVQDPTQKLSSW-VGSNCTN--WTGVACNFQT--GHVVSINLTDTSLSG--QVHPRLCKLSFLEFL  111 (732)
Q Consensus        39 ~~~~~~~~l~~~k~~~~~~~~~l~~w-~~~~~c~--w~gv~c~~~~--~~v~~L~L~~~~l~~--~~~~~l~~l~~L~~L  111 (732)
                      +.++|++||++||+++.+|. .+++| .+.+||.  |.||.|+...  ++|++|+|+++.+.|  .+|..+.++++|++|
T Consensus         3 c~~~~~~aL~~~k~~~~~~~-~l~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L   81 (313)
T 1ogq_A            3 CNPQDKQALLQIKKDLGNPT-TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFL   81 (313)
T ss_dssp             SCHHHHHHHHHHHHHTTCCG-GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSEE
T ss_pred             CCHHHHHHHHHHHHhcCCcc-cccCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCCCee
Confidence            44578889999999998876 78999 5678998  9999998554  899999999999998  889999999999999


Q ss_pred             ECCC-CCCCCcccccccCCCCCCEEECCCCCCCCCCCccccCCCCCCEEeCCCCCCCCCcCCchhhhcccCCcEEEeeCc
Q 004747          112 VLSS-NAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFN  190 (732)
Q Consensus       112 ~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~~L~~L~Ls~n  190 (732)
                      ++++ |.+.+.+|..|+++++|++|++++|.+++.+|..|.++++|++|++++| .+.+.+|..+..+ ++|++|++++|
T Consensus        82 ~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N-~l~~~~p~~~~~l-~~L~~L~L~~N  159 (313)
T 1ogq_A           82 YIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYN-ALSGTLPPSISSL-PNLVGITFDGN  159 (313)
T ss_dssp             EEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSS-EEESCCCGGGGGC-TTCCEEECCSS
T ss_pred             eCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCC-ccCCcCChHHhcC-CCCCeEECcCC
Confidence            9995 8898889999999999999999999998888888888888888888888 5566777777777 77777777777


Q ss_pred             ccccccCcccCCCC-CCCEEEeecccCCCccccccccccEEECCCCcCccccCchhhcccccCeeeCCCCccccccchhh
Q 004747          191 SFCGEIPESLYYLK-SLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCI  269 (732)
Q Consensus       191 ~l~~~~p~~l~~l~-~L~~L~Ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l  269 (732)
                      .+++.+|..+..++ +|++|++++|.++                     +.+|..+..++ |++|++++|.+++..|..+
T Consensus       160 ~l~~~~p~~l~~l~~~L~~L~L~~N~l~---------------------~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~  217 (313)
T 1ogq_A          160 RISGAIPDSYGSFSKLFTSMTISRNRLT---------------------GKIPPTFANLN-LAFVDLSRNMLEGDASVLF  217 (313)
T ss_dssp             CCEEECCGGGGCCCTTCCEEECCSSEEE---------------------EECCGGGGGCC-CSEEECCSSEEEECCGGGC
T ss_pred             cccCcCCHHHhhhhhcCcEEECcCCeee---------------------ccCChHHhCCc-ccEEECcCCcccCcCCHHH
Confidence            77777777777665 6666666655543                     34455555554 6666666666666666666


Q ss_pred             hccCCCCEEEeccCCCCCcCccccccCcCCcEEEccCCCCCCCCchhhhhcCCCCCccEEeCCCCcccCCCcccccCCCC
Q 004747          270 ASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKS  349 (732)
Q Consensus       270 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~  349 (732)
                      ..+++|++|++++|.+++.++. +..+++|++|++++|.+++.+|..+..++   +|++|++++|+++|.+|.. ..+++
T Consensus       218 ~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~---~L~~L~Ls~N~l~~~ip~~-~~l~~  292 (313)
T 1ogq_A          218 GSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLK---FLHSLNVSFNNLCGEIPQG-GNLQR  292 (313)
T ss_dssp             CTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCT---TCCEEECCSSEEEEECCCS-TTGGG
T ss_pred             hcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCc---CCCEEECcCCcccccCCCC-ccccc
Confidence            6666666666666666644443 45555566666666655555555555444   5555555555555555543 44555


Q ss_pred             CCEEeccCcc
Q 004747          350 LQALFLSNNL  359 (732)
Q Consensus       350 L~~L~Ls~n~  359 (732)
                      |+.+++++|.
T Consensus       293 L~~l~l~~N~  302 (313)
T 1ogq_A          293 FDVSAYANNK  302 (313)
T ss_dssp             SCGGGTCSSS
T ss_pred             cChHHhcCCC
Confidence            5555555554

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=1.6e-40  Score=363.68  Aligned_cols=403  Identities=23%  Similarity=0.266  Sum_probs=240.2

Q ss_pred             CCCCCEEECCCCCCCCCCCccccCCCCCCEEeCCCCCCCCCcCCchhhhcccCCcEEEeeCcccccccCcccCCCCCCCE
Q 004747          129 LSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKH  208 (732)
Q Consensus       129 l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~  208 (732)
                      .++|++|++++|.+ +.+|.+|+++++|++|++++| .+.+.+|..++++ .+|+.+++..|..           .++++
T Consensus        10 ~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n-~~~~~~p~~~~~l-~~L~~l~l~~c~~-----------~~l~~   75 (454)
T 1jl5_A           10 NTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWS-EWERNAPPGNGEQ-REMAVSRLRDCLD-----------RQAHE   75 (454)
T ss_dssp             -------------------------CCHHHHHHHHH-HHHHTSCTTSCCC-HHHHHHHHHHHHH-----------HTCSE
T ss_pred             cccchhhhcccCch-hhCChhHhcccchhhhhccCC-cccccCCcccccc-hhcchhhhhhhhc-----------cCCCE
Confidence            46677777777777 566777777777766666666 3455566666555 5555555554431           35689


Q ss_pred             EEeecccCCCccccccccccEEECCCCcCccccCchhhcccccCeeeCCCCccccccchhhhccCCCCEEEeccCCCCCc
Q 004747          209 LDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYE  288 (732)
Q Consensus       209 L~Ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~  288 (732)
                      |++++|.+++.. ....+|++|++++|.+++ +|..   .++|++|++++|.+++ ++..   .++|++|++++|++++ 
T Consensus        76 L~l~~~~l~~lp-~~~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-  145 (454)
T 1jl5_A           76 LELNNLGLSSLP-ELPPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-  145 (454)
T ss_dssp             EECTTSCCSCCC-SCCTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-
T ss_pred             EEecCCccccCC-CCcCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-
Confidence            999999988743 345679999999998887 5543   3678899999888875 3321   2688888998888886 


Q ss_pred             CccccccCcCCcEEEccCCCCCCCCchhhhhcCCCCCccEEeCCCCcccCCCcccccCCCCCCEEeccCccCCCcccccc
Q 004747          289 ISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARI  368 (732)
Q Consensus       289 ~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l  368 (732)
                      +| .+..+++|++|++++|++++ +|..+      .+|++|++++|.+++ +| .+..+++|++|++++|.+++ +|.. 
T Consensus       146 lp-~~~~l~~L~~L~l~~N~l~~-lp~~~------~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~-  213 (454)
T 1jl5_A          146 LP-ELQNSSFLKIIDVDNNSLKK-LPDLP------PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL-  213 (454)
T ss_dssp             CC-CCTTCTTCCEEECCSSCCSC-CCCCC------TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC-
T ss_pred             Cc-ccCCCCCCCEEECCCCcCcc-cCCCc------ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC-
Confidence            56 58888888888888888885 55432      278888888888885 56 57888888888888888875 4432 


Q ss_pred             CCCCCCCEEEccCCcCccccCccccCCcCcceeecccccccccCcccccCCCCCcEEEcccCceeeeccccCCCCCCCCE
Q 004747          369 GNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEI  448 (732)
Q Consensus       369 ~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~  448 (732)
                        .++|++|++++|.++ .+| .+..+++|+.|++++|++++. |.   ..++|+.|++++|++++ +|..   +++|++
T Consensus       214 --~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~l-~~---~~~~L~~L~l~~N~l~~-l~~~---~~~L~~  281 (454)
T 1jl5_A          214 --PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKTL-PD---LPPSLEALNVRDNYLTD-LPEL---PQSLTF  281 (454)
T ss_dssp             --CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSSC-CS---CCTTCCEEECCSSCCSC-CCCC---CTTCCE
T ss_pred             --cCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCcc-cc---cccccCEEECCCCcccc-cCcc---cCcCCE
Confidence              257888888888887 566 377788888888888887753 32   23678888888888774 4432   367788


Q ss_pred             EEccCCcccccchhhhhcCCCCCEEEcccCCCccccchhhhcCCCCCEEEccCCcCcccCCcccccCccccCcCCCCCCC
Q 004747          449 VDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSM  528 (732)
Q Consensus       449 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~  528 (732)
                      |++++|++++. |.   ..++|++|++++|++++ ++.   ..++|++|++++|++++ +|..                 
T Consensus       282 L~ls~N~l~~l-~~---~~~~L~~L~l~~N~l~~-i~~---~~~~L~~L~Ls~N~l~~-lp~~-----------------  335 (454)
T 1jl5_A          282 LDVSENIFSGL-SE---LPPNLYYLNASSNEIRS-LCD---LPPSLEELNVSNNKLIE-LPAL-----------------  335 (454)
T ss_dssp             EECCSSCCSEE-SC---CCTTCCEEECCSSCCSE-ECC---CCTTCCEEECCSSCCSC-CCCC-----------------
T ss_pred             EECcCCccCcc-cC---cCCcCCEEECcCCcCCc-ccC---CcCcCCEEECCCCcccc-cccc-----------------
Confidence            88888877752 21   12577778888877764 221   12467777777777764 3321                 


Q ss_pred             CCCcccCCCceeEEeEEEeecCCchhhhhhcccceEEEccCCcccccCCcccccccCCceeeccccccee--cCCc-ccC
Q 004747          529 PAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDG--QVPG-LYR  605 (732)
Q Consensus       529 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~--~ip~-l~~  605 (732)
                                                    +++|+.|++++|+++ .+|.   .+++|++|++++|++++  .+|. +..
T Consensus       336 ------------------------------~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~  381 (454)
T 1jl5_A          336 ------------------------------PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVED  381 (454)
T ss_dssp             ------------------------------CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCE
T ss_pred             ------------------------------CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHh
Confidence                                          345677777777777 5665   36777777777777776  4554 332


Q ss_pred             ccCCcEEeCCCCcCcccCCcCCCCCCCCCEEEcccCccee--eCCCC
Q 004747          606 LRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSG--FVPWK  650 (732)
Q Consensus       606 l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g--~ip~~  650 (732)
                              ++.|.+.|.+|..   +++|++||+++|+++|  .+|..
T Consensus       382 --------L~~n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~iP~s  417 (454)
T 1jl5_A          382 --------LRMNSHLAEVPEL---PQNLKQLHVETNPLREFPDIPES  417 (454)
T ss_dssp             --------EECCC----------------------------------
T ss_pred             --------hhhcccccccccc---cCcCCEEECCCCcCCccccchhh
Confidence                    2346666666653   3789999999999998  67743

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=3.1e-38  Score=345.82  Aligned_cols=322  Identities=20%  Similarity=0.192  Sum_probs=189.5

Q ss_pred             cccccccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEECCCCCCCCCCCccccCCCCCCEEeCCCCCCCCCcCCch
Q 004747           95 SGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGW  174 (732)
Q Consensus        95 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~p~~  174 (732)
                      .+..+..++++++|++|++++|.+++. | .++.+++|++|++++|++++. |  ++.+++|++|++++|+ +++. +  
T Consensus        31 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~-l~~~-~--  101 (457)
T 3bz5_A           31 QATDTISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNK-LTNL-D--  101 (457)
T ss_dssp             CTTSEEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSC-CSCC-C--
T ss_pred             CcccccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCC-Ccee-e--
Confidence            334445677788888888888888764 4 578888888888888888864 3  7777788888887773 3332 2  


Q ss_pred             hhhcccCCcEEEeeCcccccccCcccCCCCCCCEEEeecccCCCccccccccccEEECCCCcCccccCchhhcccccCee
Q 004747          175 VGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVL  254 (732)
Q Consensus       175 ~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L  254 (732)
                      ++.+ ++|++|++++|.+++ +|  ++.+++|++|++++|.+++..                        ++.+++|++|
T Consensus       102 ~~~l-~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l~------------------------l~~l~~L~~L  153 (457)
T 3bz5_A          102 VTPL-TKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEID------------------------VSHNTQLTEL  153 (457)
T ss_dssp             CTTC-TTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCCC------------------------CTTCTTCCEE
T ss_pred             cCCC-CcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCccceec------------------------cccCCcCCEE
Confidence            5555 677777777777765 33  666666666666666665432                        3344555555


Q ss_pred             eCCCCccccccchhhhccCCCCEEEeccCCCCCcCccccccCcCCcEEEccCCCCCCCCchhhhhcCCCCCccEEeCCCC
Q 004747          255 KLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHN  334 (732)
Q Consensus       255 ~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~L~~L~Ls~n  334 (732)
                      ++++|...+.+  .++.+++|++|++++|++++ +|  +..+++|+.|++++|.+++.   .+..+   ++|++|++++|
T Consensus       154 ~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l---~~L~~L~Ls~N  222 (457)
T 3bz5_A          154 DCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQN---IQLTFLDCSSN  222 (457)
T ss_dssp             ECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTC---TTCSEEECCSS
T ss_pred             ECCCCCccccc--ccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccC---CCCCEEECcCC
Confidence            55555433333  24455566666666666554 22  55555666666666665543   12222   25666666666


Q ss_pred             cccCCCcccccCCCCCCEEeccCccCCCccccccCCCCCCCEEEccCCcCccccCccccCCcCcceeecccccccccCcc
Q 004747          335 RFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQP  414 (732)
Q Consensus       335 ~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~  414 (732)
                      ++++ +|  +..+++|+.|++++|++++..   ++.+++|+.|++++|.              |+.+++++|.+.+.+| 
T Consensus       223 ~l~~-ip--~~~l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n~--------------L~~L~l~~n~~~~~~~-  281 (457)
T 3bz5_A          223 KLTE-ID--VTPLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQTD--------------LLEIDLTHNTQLIYFQ-  281 (457)
T ss_dssp             CCSC-CC--CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECTTCC--------------CSCCCCTTCTTCCEEE-
T ss_pred             cccc-cC--ccccCCCCEEEeeCCcCCCcC---HHHCCCCCEEeccCCC--------------CCEEECCCCccCCccc-
Confidence            6664 44  555666666666666666432   3445556666655442              3445555555555544 


Q ss_pred             cccCCCCCcEEEcccCceeeeccccCCCCCCCCEEEccCCcccccchhhhhcCCCCCEEEcccCCCccccchhhhcCCCC
Q 004747          415 ELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAI  494 (732)
Q Consensus       415 ~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L  494 (732)
                       ++.+++|+.|++++|...+.+|.   ..++|+.|++++|             ++|++|++++|++++. +  +..+++|
T Consensus       282 -~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~~-------------~~L~~L~L~~N~l~~l-~--l~~l~~L  341 (457)
T 3bz5_A          282 -AEGCRKIKELDVTHNTQLYLLDC---QAAGITELDLSQN-------------PKLVYLYLNNTELTEL-D--VSHNTKL  341 (457)
T ss_dssp             -CTTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCTTC-------------TTCCEEECTTCCCSCC-C--CTTCTTC
T ss_pred             -ccccccCCEEECCCCcccceecc---CCCcceEechhhc-------------ccCCEEECCCCccccc-c--cccCCcC
Confidence             34556666666666665555553   2334444444433             4566666666666542 2  5555566


Q ss_pred             CEEEccCCcCc
Q 004747          495 QMMDFSTNKFM  505 (732)
Q Consensus       495 ~~L~ls~N~l~  505 (732)
                      +.|++++|+++
T Consensus       342 ~~L~l~~N~l~  352 (457)
T 3bz5_A          342 KSLSCVNAHIQ  352 (457)
T ss_dssp             SEEECCSSCCC
T ss_pred             cEEECCCCCCC
Confidence            66666665554

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=3.1e-38  Score=345.90  Aligned_cols=356  Identities=17%  Similarity=0.163  Sum_probs=288.0

Q ss_pred             CCcEEEEEcCCCCCcccccccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEECCCCCCCCCCCccccCCCCCCEEe
Q 004747           81 TGHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELI  160 (732)
Q Consensus        81 ~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~  160 (732)
                      -.+++.|+++++.+++. | .+..+++|++|++++|++++. |  ++.+++|++|++++|.+++. |  ++++++|++|+
T Consensus        41 l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~  112 (457)
T 3bz5_A           41 LATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLN  112 (457)
T ss_dssp             HTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEE
T ss_pred             cCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEE
Confidence            35799999999999875 4 799999999999999999975 4  89999999999999999975 3  88999999999


Q ss_pred             CCCCCCCCCcCCchhhhcccCCcEEEeeCcccccccCcccCCCCCCCEEEeecccCCCcc-ccccccccEEECCCCcCcc
Q 004747          161 LKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNV-HDFYQSLLVLNLGSNRFSG  239 (732)
Q Consensus       161 Ls~n~~~~~~~p~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~-~~~~~~L~~L~L~~n~l~~  239 (732)
                      +++| .+++ +|  ++.+ ++|++|++++|.+++. +  ++++++|++|++++|...+.+ ...+.+|++|++++|++++
T Consensus       113 L~~N-~l~~-l~--~~~l-~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~  184 (457)
T 3bz5_A          113 CDTN-KLTK-LD--VSQN-PLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITE  184 (457)
T ss_dssp             CCSS-CCSC-CC--CTTC-TTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCC
T ss_pred             CCCC-cCCe-ec--CCCC-CcCCEEECCCCcccee-c--cccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccce
Confidence            9999 4544 44  6777 8999999999999974 3  889999999999999554433 3345668899999998886


Q ss_pred             ccCchhhcccccCeeeCCCCccccccchhhhccCCCCEEEeccCCCCCcCccccccCcCCcEEEccCCCCCCCCchhhhh
Q 004747          240 TLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQ  319 (732)
Q Consensus       240 ~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~  319 (732)
                       +|  +..+++|++|++++|.+++.   .++.+++|++|++++|++++ +|  +..+++|++|++++|++++..+   ..
T Consensus       185 -l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~---~~  252 (457)
T 3bz5_A          185 -LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDV---ST  252 (457)
T ss_dssp             -CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCC---TT
T ss_pred             -ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCH---HH
Confidence             34  77788888888888888864   37788888888888888886 44  7788888888888888886432   22


Q ss_pred             cCCCCCccEEeCCCCcccCCCcccccCCCCCCEEeccCccCCCccccccCCCCCCCEEEccCCcCccccCccccCCcCcc
Q 004747          320 TTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLL  399 (732)
Q Consensus       320 l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~  399 (732)
                      +.   +|+.|++++|              +|+.|++++|.+.+.+|  ++.+++|+.|++++|...+.+|.   ...+|+
T Consensus       253 l~---~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~  310 (457)
T 3bz5_A          253 LS---KLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC---QAAGIT  310 (457)
T ss_dssp             CT---TCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC---TTCCCS
T ss_pred             CC---CCCEEeccCC--------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceecc---CCCcce
Confidence            33   6778877665              45678888888888877  57789999999999988887774   345566


Q ss_pred             eeecccccccccCcccccCCCCCcEEEcccCceeeeccccCCCCCCCCEEEccCCcccccchhhhhcCCCCCEEEcccCC
Q 004747          400 ALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNK  479 (732)
Q Consensus       400 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~  479 (732)
                      .+++++|             ++|+.|++++|++++. +  +.++++|+.|++++|++++        ++.|..|++++|.
T Consensus       311 ~L~l~~~-------------~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~  366 (457)
T 3bz5_A          311 ELDLSQN-------------PKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNN  366 (457)
T ss_dssp             CCCCTTC-------------TTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTS
T ss_pred             Eechhhc-------------ccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC--------ccccccccccCCc
Confidence            6655544             6899999999999974 3  8899999999999999986        3567777899999


Q ss_pred             CccccchhhhcCCCCCEEEccCCcCcccCCcccccC
Q 004747          480 LSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDGNFNF  515 (732)
Q Consensus       480 l~~~~p~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~  515 (732)
                      +.|.     ..+..++.+++++|+++|.+|..++..
T Consensus       367 l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~~~~  397 (457)
T 3bz5_A          367 FEAE-----GQTITMPKETLTNNSLTIAVSPDLLDQ  397 (457)
T ss_dssp             EEEE-----EEEEECCCBCCBTTBEEEECCTTCBCT
T ss_pred             EEec-----ceeeecCccccccCcEEEEcChhHhcc
Confidence            9876     345668889999999999999887543

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=5.9e-36  Score=330.37  Aligned_cols=344  Identities=25%  Similarity=0.350  Sum_probs=210.9

Q ss_pred             CcEEEEEcCCCCCcccccccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEECCCCCCCCCCCccccCCCCCCEEeC
Q 004747           82 GHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELIL  161 (732)
Q Consensus        82 ~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L  161 (732)
                      .+++.|+++++.+.. ++ .+..+++|++|++++|.+++..+  +.++++|++|++++|.+.+..+  ++++++|++|++
T Consensus        46 ~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L  119 (466)
T 1o6v_A           46 DQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTL  119 (466)
T ss_dssp             HTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEEC
T ss_pred             ccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEEC
Confidence            357777777777653 33 46677778888888877775543  7777788888888777775544  777777777777


Q ss_pred             CCCCCCCCcCCchhhhcccCCcEEEeeCcccccccCcccCCCCCCCEEEeecccCCCccccccccccEEECCCCcCcccc
Q 004747          162 KGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTL  241 (732)
Q Consensus       162 s~n~~~~~~~p~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~  241 (732)
                      ++|. +.+. +. +..+ ++|++|++++|.+.+ ++ .+.++++|++|+++ |.+.                     +. 
T Consensus       120 ~~n~-l~~~-~~-~~~l-~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~l~-~~~~---------------------~~-  170 (466)
T 1o6v_A          120 FNNQ-ITDI-DP-LKNL-TNLNRLELSSNTISD-IS-ALSGLTSLQQLSFG-NQVT---------------------DL-  170 (466)
T ss_dssp             CSSC-CCCC-GG-GTTC-TTCSEEEEEEEEECC-CG-GGTTCTTCSEEEEE-ESCC---------------------CC-
T ss_pred             CCCC-CCCC-hH-HcCC-CCCCEEECCCCccCC-Ch-hhccCCcccEeecC-Cccc---------------------Cc-
Confidence            7773 3332 22 5555 677777777777664 22 36666677766664 2221                     11 


Q ss_pred             CchhhcccccCeeeCCCCccccccchhhhccCCCCEEEeccCCCCCcCccccccCcCCcEEEccCCCCCCCCchhhhhcC
Q 004747          242 PCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTT  321 (732)
Q Consensus       242 ~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~  321 (732)
                       ..+..+++|++|++++|.+.+.  ..+..+++|++|++++|.+++..+  +..+++|+.|++++|.+++. + .+..++
T Consensus       171 -~~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~-~l~~l~  243 (466)
T 1o6v_A          171 -KPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI-G-TLASLT  243 (466)
T ss_dssp             -GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-G-GGGGCT
T ss_pred             -hhhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc-h-hhhcCC
Confidence             1256667777777777777643  236677777777777777765443  55666777777777766632 1 233333


Q ss_pred             CCCCccEEeCCCCcccCCCcccccCCCCCCEEeccCccCCCccccccCCCCCCCEEEccCCcCccccCccccCCcCccee
Q 004747          322 EKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLAL  401 (732)
Q Consensus       322 ~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L  401 (732)
                         +|+.|++++|.+++..+  +..+++|++|++++|.+++..+  +..+++|+.|++++|.+.+.              
T Consensus       244 ---~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~--------------  302 (466)
T 1o6v_A          244 ---NLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDI--------------  302 (466)
T ss_dssp             ---TCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCC--------------
T ss_pred             ---CCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCc--------------
Confidence               56666666666654333  5555666666666666654332  55555666666665555532              


Q ss_pred             ecccccccccCcccccCCCCCcEEEcccCceeeeccccCCCCCCCCEEEccCCcccccchhhhhcCCCCCEEEcccCCCc
Q 004747          402 IVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLS  481 (732)
Q Consensus       402 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  481 (732)
                                .+  +..+++|+.|++++|++++..|  +..+++|++|++++|++++.  ..+..+++|++|++++|+++
T Consensus       303 ----------~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~  366 (466)
T 1o6v_A          303 ----------SP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQIS  366 (466)
T ss_dssp             ----------GG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCC
T ss_pred             ----------hh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccC
Confidence                      22  4455566666666666665444  45566666666666666644  34556666666666666666


Q ss_pred             cccchhhhcCCCCCEEEccCCcCcc
Q 004747          482 GNLPNWLFSFQAIQMMDFSTNKFMG  506 (732)
Q Consensus       482 ~~~p~~~~~~~~L~~L~ls~N~l~~  506 (732)
                      +..|  +..+++|+.|++++|++++
T Consensus       367 ~~~~--~~~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          367 DLTP--LANLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             BCGG--GTTCTTCCEEECCCEEEEC
T ss_pred             ccch--hhcCCCCCEEeccCCcccC
Confidence            5555  5666666666666666654

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=4.9e-35  Score=323.02  Aligned_cols=323  Identities=27%  Similarity=0.362  Sum_probs=224.6

Q ss_pred             CCcEEEEEcCCCCCcccccccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEECCCCCCCCCCCccccCCCCCCEEe
Q 004747           81 TGHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELI  160 (732)
Q Consensus        81 ~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~  160 (732)
                      ..+++.|+++++.+++..+  +.++++|++|++++|.+++..+  ++++++|++|++++|.+++..+  +.++++|++|+
T Consensus        67 l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~  140 (466)
T 1o6v_A           67 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLE  140 (466)
T ss_dssp             CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEE
T ss_pred             hcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCChH--HcCCCCCCEEE
Confidence            3579999999999986543  9999999999999999997655  9999999999999999997643  89999999999


Q ss_pred             CCCCCCCCCcCCchhhhcccCCcEEEeeCcccccccCcccCCCCCCCEEEeecccCCCccccccccccEEECCCCcCccc
Q 004747          161 LKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGT  240 (732)
Q Consensus       161 Ls~n~~~~~~~p~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~  240 (732)
                      +++|+ +.+ ++ .+..+ ++|++|+++ |.+.+..  .+.++++|++|++++|.+++..                    
T Consensus       141 l~~n~-l~~-~~-~~~~l-~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n~l~~~~--------------------  193 (466)
T 1o6v_A          141 LSSNT-ISD-IS-ALSGL-TSLQQLSFG-NQVTDLK--PLANLTTLERLDISSNKVSDIS--------------------  193 (466)
T ss_dssp             EEEEE-ECC-CG-GGTTC-TTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSSCCCCCG--------------------
T ss_pred             CCCCc-cCC-Ch-hhccC-CcccEeecC-CcccCch--hhccCCCCCEEECcCCcCCCCh--------------------
Confidence            99995 333 33 47777 899999997 4555433  3889999999999999876432                    


Q ss_pred             cCchhhcccccCeeeCCCCccccccchhhhccCCCCEEEeccCCCCCcCccccccCcCCcEEEccCCCCCCCCchhhhhc
Q 004747          241 LPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQT  320 (732)
Q Consensus       241 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l  320 (732)
                         .+..+++|++|++++|.+.+..|  ++.+++|++|++++|.+++.  +.+..+++|++|++++|.+++..+  +..+
T Consensus       194 ---~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l  264 (466)
T 1o6v_A          194 ---VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGL  264 (466)
T ss_dssp             ---GGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTC
T ss_pred             ---hhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcC
Confidence               24455566666666666554433  45566666666666666542  345566666666666666664333  3333


Q ss_pred             CCCCCccEEeCCCCcccCCCcccccCCCCCCEEeccCccCCCccccccCCCCCCCEEEccCCcCccccCccccCCcCcce
Q 004747          321 TEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLA  400 (732)
Q Consensus       321 ~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~  400 (732)
                      +   +|+.|++++|.+++..+  +..+++|++|++++|++++..+  +..+++|+.|++++|.+++..|  +..+++|+.
T Consensus       265 ~---~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~  335 (466)
T 1o6v_A          265 T---KLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQR  335 (466)
T ss_dssp             T---TCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCE
T ss_pred             C---CCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCE
Confidence            3   66777777776664332  5666777777777777765433  5667777777777777765444  455566666


Q ss_pred             eecccccccccCcccccCCCCCcEEEcccCceeeeccccCCCCCCCCEEEccCCcccc
Q 004747          401 LIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSG  458 (732)
Q Consensus       401 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  458 (732)
                      |++++|.+++.  ..+..+++|+.|++++|++++..|  +..+++|+.|++++|.+++
T Consensus       336 L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          336 LFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             EECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred             eECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence            66666665554  345666677777777777766555  5666677777777776664

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=2e-36  Score=335.55  Aligned_cols=321  Identities=21%  Similarity=0.153  Sum_probs=182.9

Q ss_pred             CeeeCCCCccccccchhhhccCCCCEEEeccCCCCCcCccccccCcCCcEEEccCCCCCCCCchhhhhcCCCCCccEEeC
Q 004747          252 TVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDL  331 (732)
Q Consensus       252 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~L~~L~L  331 (732)
                      +.++.++++++ .+|..+  .+++++|++++|.+++..+..+..+++|++|+|++|.+++..|..+..+.   +|++|++
T Consensus        14 ~~v~c~~~~l~-~ip~~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~---~L~~L~L   87 (477)
T 2id5_A           14 RAVLCHRKRFV-AVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLF---NLRTLGL   87 (477)
T ss_dssp             TEEECCSCCCS-SCCSCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCT---TCCEEEC
T ss_pred             CEEEeCCCCcC-cCCCCC--CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCc---cCCEEEC
Confidence            45666666665 344433  24667777777777666666666666677777766666655555555554   6666666


Q ss_pred             CCCcccCCCcccccCCCCCCEEeccCccCCCccccccCCCCCCCEEEccCCcCccccCccccCCcCcceeeccccccccc
Q 004747          332 SHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGE  411 (732)
Q Consensus       332 s~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~  411 (732)
                      ++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+.++++|+.|++++|.+++.
T Consensus        88 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  167 (477)
T 2id5_A           88 RSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSI  167 (477)
T ss_dssp             CSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSC
T ss_pred             CCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCccc
Confidence            66666644444456666666666666666655555666666666666666666655555555555555555555555554


Q ss_pred             CcccccCCCCCcEEEcccCceeeeccccCCCCCCCCEEEccCCcccccchhhhhcCCCCCEEEcccCCCccccchhhhcC
Q 004747          412 IQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSF  491 (732)
Q Consensus       412 ~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~  491 (732)
                      .+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+.++.......+|++|++++|++++..+..+..+
T Consensus       168 ~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l  247 (477)
T 2id5_A          168 PTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHL  247 (477)
T ss_dssp             CHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTC
T ss_pred             ChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCc
Confidence            44445555555555555555554444445555555555555554444444333333344444444444442222333444


Q ss_pred             CCCCEEEccCCcCcccCCcccccCccccCcCCCCCCCCCCcccCCCceeEEeEEEeecCCchhhhhhcccceEEEccCCc
Q 004747          492 QAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVGMDLSDNL  571 (732)
Q Consensus       492 ~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~  571 (732)
                                                                                          ++|+.|+|++|.
T Consensus       248 --------------------------------------------------------------------~~L~~L~Ls~n~  259 (477)
T 2id5_A          248 --------------------------------------------------------------------VYLRFLNLSYNP  259 (477)
T ss_dssp             --------------------------------------------------------------------TTCCEEECCSSC
T ss_pred             --------------------------------------------------------------------cccCeeECCCCc
Confidence                                                                                445555555555


Q ss_pred             ccccCCcccccccCCceeecccccceecCCc-ccCccCCcEEeCCCCcCcccCCcCCCCCCCCCEEEcccCcceee
Q 004747          572 LHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGF  646 (732)
Q Consensus       572 l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~-l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~  646 (732)
                      +++..+..+..+++|++|+|++|++++..|. +..+++|+.|||++|++++..+..|..+++|++|++++|++.+.
T Consensus       260 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~  335 (477)
T 2id5_A          260 ISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACD  335 (477)
T ss_dssp             CCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECS
T ss_pred             CCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCc
Confidence            5544445555566666666666666655555 55566666666666666655555556666666666666666543

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=3.9e-35  Score=305.75  Aligned_cols=258  Identities=32%  Similarity=0.430  Sum_probs=227.8

Q ss_pred             CCCCEEEccCCcCcc--ccCccccCCcCcceeeccc-ccccccCcccccCCCCCcEEEcccCceeeeccccCCCCCCCCE
Q 004747          372 TYLQVIDLSHNMLSG--SIPLNIVGCFQLLALIVNN-NNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEI  448 (732)
Q Consensus       372 ~~L~~L~Ls~n~l~~--~~p~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~  448 (732)
                      .+++.|++++|.+++  .+|..+..+++|++|++++ |.+.+.+|..++.+++|++|++++|.+++.+|..+.++++|++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  129 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence            456777777777776  6777777777777777774 7777777778888899999999999999889988999999999


Q ss_pred             EEccCCcccccchhhhhcCCCCCEEEcccCCCccccchhhhcCC-CCCEEEccCCcCcccCCcccccCccccCcCCCCCC
Q 004747          449 VDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQ-AIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRS  527 (732)
Q Consensus       449 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~-~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~  527 (732)
                      |++++|.+++.+|..+..+++|++|++++|++++.+|..+..++ +|++|++++|++++.+|..+..             
T Consensus       130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~-------------  196 (313)
T 1ogq_A          130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN-------------  196 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGG-------------
T ss_pred             EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhC-------------
Confidence            99999999988999999999999999999999999999999988 9999999999998888765411             


Q ss_pred             CCCCcccCCCceeEEeEEEeecCCchhhhhhcccceEEEccCCcccccCCcccccccCCceeecccccceecCCcccCcc
Q 004747          528 MPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLR  607 (732)
Q Consensus       528 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~l~~l~  607 (732)
                                                     +. |+.|++++|++++.+|..+..+++|++|+|++|.+++.+|.+..++
T Consensus       197 -------------------------------l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~  244 (313)
T 1ogq_A          197 -------------------------------LN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSK  244 (313)
T ss_dssp             -------------------------------CC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCT
T ss_pred             -------------------------------Cc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccC
Confidence                                           33 8899999999999999999999999999999999998888888899


Q ss_pred             CCcEEeCCCCcCcccCCcCCCCCCCCCEEEcccCcceeeCCCCCCCCCcCc-cccCCCCCCCCCCCCCC
Q 004747          608 SLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVPWKQGYQKFPG-AFAGNPNLCLESSHGEC  675 (732)
Q Consensus       608 ~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~-~~~gn~~lcg~~~~~~c  675 (732)
                      +|++|+|++|++++.+|..+..+++|++|++++|+++|.+|...++..+.. .+.|||.+||.|.. .|
T Consensus       245 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~p~~-~C  312 (313)
T 1ogq_A          245 NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP-AC  312 (313)
T ss_dssp             TCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred             CCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCccCCCCC-CC
Confidence            999999999999999999999999999999999999999999877777777 89999999998765 46

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=1.3e-34  Score=321.09  Aligned_cols=274  Identities=20%  Similarity=0.159  Sum_probs=166.7

Q ss_pred             CEEEeecccCCCccccccccccEEECCCCcCccccCchhhcccccCeeeCCCCccccccchhhhccCCCCEEEeccCCCC
Q 004747          207 KHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLN  286 (732)
Q Consensus       207 ~~L~Ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  286 (732)
                      +.++.+++.++..+......+++|+|++|.+++..+..+..+++|++|++++|.+++..|..|.++++|++|++++|.++
T Consensus        14 ~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~   93 (477)
T 2id5_A           14 RAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK   93 (477)
T ss_dssp             TEEECCSCCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred             CEEEeCCCCcCcCCCCCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCC
Confidence            56777777776555444455777777777777666667777777777777777777666666777777777777777766


Q ss_pred             CcCccccccCcCCcEEEccCCCCCCCCchhhhhcCCCCCccEEeCCCCcccCCCcccccCCCCCCEEeccCccCCCcccc
Q 004747          287 YEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPA  366 (732)
Q Consensus       287 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~  366 (732)
                      ...+..+..+++|++|++++|.+++..+..+..+.   +|+.|++++|.+++..+..+..+++|++|++++|.+++..+.
T Consensus        94 ~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~---~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  170 (477)
T 2id5_A           94 LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLY---NLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTE  170 (477)
T ss_dssp             SCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCT---TCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHH
T ss_pred             ccCcccccCCCCCCEEECCCCccccCChhHccccc---cCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChh
Confidence            55445566666666666666666655555554444   566666666666555555555666666666666666554444


Q ss_pred             ccCCCCCCCEEEccCCcCccccCccccCCcCcceeecccccccccCcccccCCCCCcEEEcccCceeeeccccCCCCCCC
Q 004747          367 RIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSL  446 (732)
Q Consensus       367 ~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L  446 (732)
                      .+.++++|+.|++++|.+.+..+..                        +..+++|+.|++++|...+.+|.......+|
T Consensus       171 ~l~~l~~L~~L~l~~n~i~~~~~~~------------------------~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L  226 (477)
T 2id5_A          171 ALSHLHGLIVLRLRHLNINAIRDYS------------------------FKRLYRLKVLEISHWPYLDTMTPNCLYGLNL  226 (477)
T ss_dssp             HHTTCTTCCEEEEESCCCCEECTTC------------------------SCSCTTCCEEEEECCTTCCEECTTTTTTCCC
T ss_pred             HhcccCCCcEEeCCCCcCcEeChhh------------------------cccCcccceeeCCCCccccccCcccccCccc
Confidence            5555566666666665555444444                        4455555555555555554555444444456


Q ss_pred             CEEEccCCcccccchhhhhcCCCCCEEEcccCCCccccchhhhcCCCCCEEEccCCcCccc
Q 004747          447 EIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGF  507 (732)
Q Consensus       447 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~ls~N~l~~~  507 (732)
                      ++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|++++.
T Consensus       227 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  287 (477)
T 2id5_A          227 TSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVV  287 (477)
T ss_dssp             SEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEE
T ss_pred             cEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceE
Confidence            6666666666544444555666666666666666555555555555555555555555543

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=2.1e-33  Score=302.84  Aligned_cols=332  Identities=20%  Similarity=0.155  Sum_probs=190.9

Q ss_pred             ccccCeeeCCCCccccccchhhhccCCCCEEEeccCCCCCcCccccccCcCCcEEEccCCCCCCCCchhhhhcCCCCCcc
Q 004747          248 AMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLV  327 (732)
Q Consensus       248 ~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~L~  327 (732)
                      +.++++|++++|.+....+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..|..+..++   +|+
T Consensus        44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~---~L~  120 (390)
T 3o6n_A           44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP---LLT  120 (390)
T ss_dssp             GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT---TCC
T ss_pred             cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCC---CCC
Confidence            45666666666666644444456666777777776666655555666666666666666666655555555544   666


Q ss_pred             EEeCCCCcccCCCcccccCCCCCCEEeccCccCCCccccccCCCCCCCEEEccCCcCccccCccccCCcCcceeeccccc
Q 004747          328 LLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNN  407 (732)
Q Consensus       328 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~  407 (732)
                      +|++++|.++...+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++.   .+..+++|+.+++++|.
T Consensus       121 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~  197 (390)
T 3o6n_A          121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNL  197 (390)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSC
T ss_pred             EEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccc
Confidence            666666666633333346666666666666666655555666666666666666666532   12333444444444444


Q ss_pred             ccccCcccccCCCCCcEEEcccCceeeeccccCCCCCCCCEEEccCCcccccchhhhhcCCCCCEEEcccCCCccccchh
Q 004747          408 LSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNW  487 (732)
Q Consensus       408 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~  487 (732)
                      +.+.     ...++|+.|++++|.+... |..  ..++|++|++++|.+++.  .++..+++|++|++++|.+.+..|..
T Consensus       198 l~~~-----~~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~  267 (390)
T 3o6n_A          198 LSTL-----AIPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHP  267 (390)
T ss_dssp             CSEE-----ECCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGG
T ss_pred             cccc-----CCCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhH
Confidence            4321     2223455555555555432 211  124455555555555432  23444444444444444444444444


Q ss_pred             hhcCCCCCEEEccCCcCcccCCcccccCccccCcCCCCCCCCCCcccCCCceeEEeEEEeecCCchhhhhhcccceEEEc
Q 004747          488 LFSFQAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVGMDL  567 (732)
Q Consensus       488 ~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdL  567 (732)
                      +..+                                                                    ++|+.|++
T Consensus       268 ~~~l--------------------------------------------------------------------~~L~~L~L  279 (390)
T 3o6n_A          268 FVKM--------------------------------------------------------------------QRLERLYI  279 (390)
T ss_dssp             GTTC--------------------------------------------------------------------SSCCEEEC
T ss_pred             cccc--------------------------------------------------------------------ccCCEEEC
Confidence            4444                                                                    44555555


Q ss_pred             cCCcccccCCcccccccCCceeecccccceecCCcccCccCCcEEeCCCCcCcccCCcCCCCCCCCCEEEcccCcceeeC
Q 004747          568 SDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFV  647 (732)
Q Consensus       568 s~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~i  647 (732)
                      ++|+++ .+|..+..+++|++|+|++|++++..+.+..+++|++|+|++|.+++. |  +..+++|++|++++|++.+.-
T Consensus       280 ~~n~l~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~~  355 (390)
T 3o6n_A          280 SNNRLV-ALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNS  355 (390)
T ss_dssp             CSSCCC-EEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHH
T ss_pred             CCCcCc-ccCcccCCCCCCCEEECCCCcceecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccchh
Confidence            555555 345555667778888888888874433477788888888888888754 3  667788899999999887642


Q ss_pred             CCCCCCCCcCc-cccCCCCCCC
Q 004747          648 PWKQGYQKFPG-AFAGNPNLCL  668 (732)
Q Consensus       648 p~~~~~~~~~~-~~~gn~~lcg  668 (732)
                      .. ..+..+.. .+.+++..|.
T Consensus       356 ~~-~~~~~~~~~~~~~~~~~c~  376 (390)
T 3o6n_A          356 LR-ALFRNVARPAVDDADQHCK  376 (390)
T ss_dssp             HH-HHTTTCCTTTBCCCCSCCC
T ss_pred             HH-HHHHHHHhhcccccCceec
Confidence            11 11222222 4566666664

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=1.8e-33  Score=303.31  Aligned_cols=350  Identities=18%  Similarity=0.152  Sum_probs=239.4

Q ss_pred             CCCC-CCCCCCC-ccceeecCCCCcEEEEEcCCCCCcccccccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEECC
Q 004747           61 LSSW-VGSNCTN-WTGVACNFQTGHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLS  138 (732)
Q Consensus        61 l~~w-~~~~~c~-w~gv~c~~~~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls  138 (732)
                      +++| .+.+||. |.+..|.....+     +............-..++++++|++++|.++...+..|..+++|++|+++
T Consensus         3 ~~~~~~~~~C~~~~~~~~c~~~~~~-----i~~~~~~~~~~~~~~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~   77 (390)
T 3o6n_A            3 VKPRQPEYKCIDSNLQYDCVFYDVH-----IDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLN   77 (390)
T ss_dssp             ----CCEECBCC------EEEESCE-----ECSSCCCCEESCSSGGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECT
T ss_pred             cCCCCCccceehhhhhhccceeeee-----eecccccccccccccccCCceEEEecCCchhhCChhHhcccccCcEEECC
Confidence            5678 5667775 555555422211     22221111112222356888999999988875555557888999999999


Q ss_pred             CCCCCCCCCccccCCCCCCEEeCCCCCCCCCcCCchhhhcccCCcEEEeeCcccccccCcccCCCCCCCEEEeecccCCC
Q 004747          139 YNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTG  218 (732)
Q Consensus       139 ~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~  218 (732)
                      +|.+++..+..|..+++|++|++++| .+.+..|..++.+ ++|++|++++|.++...+..+.++++|++|++++|.+++
T Consensus        78 ~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l-~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~  155 (390)
T 3o6n_A           78 DLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNV-PLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLER  155 (390)
T ss_dssp             TSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB
T ss_pred             CCcccccChhhccCCCCcCEEECCCC-CCCcCCHHHhcCC-CCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCc
Confidence            99988777778888888888888888 4566666667777 778888888888774444445777777777777776654


Q ss_pred             ccccccccccEEECCCCcCccccCchhhcccccCeeeCCCCccccccchhhhccCCCCEEEeccCCCCCcCccccccCcC
Q 004747          219 NVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEK  298 (732)
Q Consensus       219 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~  298 (732)
                      .                     .+..+..+++|++|++++|.+++.   .++.+++|++|++++|.+++     +...++
T Consensus       156 ~---------------------~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~-----~~~~~~  206 (390)
T 3o6n_A          156 I---------------------EDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST-----LAIPIA  206 (390)
T ss_dssp             C---------------------CTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSE-----EECCSS
T ss_pred             c---------------------ChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccccc-----cCCCCc
Confidence            3                     344455566666667766666643   24556677777777776653     233456


Q ss_pred             CcEEEccCCCCCCCCchhhhhcCCCCCccEEeCCCCcccCCCcccccCCCCCCEEeccCccCCCccccccCCCCCCCEEE
Q 004747          299 LLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVID  378 (732)
Q Consensus       299 L~~L~Ls~n~l~~~~p~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~  378 (732)
                      |+.|++++|.++.. |...     .++|+.|++++|.+++.  ..+..+++|++|++++|.+++..|..+..+++|++|+
T Consensus       207 L~~L~l~~n~l~~~-~~~~-----~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  278 (390)
T 3o6n_A          207 VEELDASHNSINVV-RGPV-----NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLY  278 (390)
T ss_dssp             CSEEECCSSCCCEE-ECCC-----CSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEE
T ss_pred             ceEEECCCCeeeec-cccc-----cccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEE
Confidence            77777777777632 3221     13688888888888743  4677788888888888888877777888888888888


Q ss_pred             ccCCcCccccCccccCCcCcceeecccccccccCcccccCCCCCcEEEcccCceeeeccccCCCCCCCCEEEccCCcccc
Q 004747          379 LSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSG  458 (732)
Q Consensus       379 Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  458 (732)
                      +++|++++ +|..+..+++|+.|++++|++.+ +|..+..+++|+.|++++|++++. +  +..+++|++|++++|.+.+
T Consensus       279 L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~  353 (390)
T 3o6n_A          279 ISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDC  353 (390)
T ss_dssp             CCSSCCCE-EECSSSCCTTCCEEECCSSCCCC-CGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEH
T ss_pred             CCCCcCcc-cCcccCCCCCCCEEECCCCccee-cCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccc
Confidence            88888874 45556677888888888888874 455577888999999999998854 3  6778899999999999985


Q ss_pred             c
Q 004747          459 S  459 (732)
Q Consensus       459 ~  459 (732)
                      .
T Consensus       354 ~  354 (390)
T 3o6n_A          354 N  354 (390)
T ss_dssp             H
T ss_pred             h
Confidence            4

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=1.9e-33  Score=319.86  Aligned_cols=333  Identities=21%  Similarity=0.168  Sum_probs=196.1

Q ss_pred             ccccCeeeCCCCccccccchhhhccCCCCEEEeccCCCCCcCccccccCcCCcEEEccCCCCCCCCchhhhhcCCCCCcc
Q 004747          248 AMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLV  327 (732)
Q Consensus       248 ~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~L~  327 (732)
                      +.+++.+++++|.+....+..++.+++|++|++++|.+++..+..+..+++|++|+|++|.+++..|..+..++   +|+
T Consensus        50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~---~L~  126 (597)
T 3oja_B           50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP---LLT  126 (597)
T ss_dssp             GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT---TCC
T ss_pred             CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCC---CCC
Confidence            34566666666666654445556666667777766666665555666666666666666666655555555544   666


Q ss_pred             EEeCCCCcccCCCcccccCCCCCCEEeccCccCCCccccccCCCCCCCEEEccCCcCccccCccccCCcCcceeeccccc
Q 004747          328 LLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNN  407 (732)
Q Consensus       328 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~  407 (732)
                      +|++++|.+++..+..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++. +  +..+++|+.|++++|.
T Consensus       127 ~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~--~~~l~~L~~L~l~~n~  203 (597)
T 3oja_B          127 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-D--LSLIPSLFHANVSYNL  203 (597)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC-C--GGGCTTCSEEECCSSC
T ss_pred             EEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc-C--hhhhhhhhhhhcccCc
Confidence            666666666643344456666666666666666666666666666666666666666542 1  2233444444444444


Q ss_pred             ccccCcccccCCCCCcEEEcccCceeeeccccCCCCCCCCEEEccCCcccccchhhhhcCCCCCEEEcccCCCccccchh
Q 004747          408 LSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNW  487 (732)
Q Consensus       408 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~  487 (732)
                      +.+     +...++|+.|++++|.+....+ .+  .++|+.|++++|.+++.  .++..+++|+.|++++|.+.+..|..
T Consensus       204 l~~-----l~~~~~L~~L~ls~n~l~~~~~-~~--~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~  273 (597)
T 3oja_B          204 LST-----LAIPIAVEELDASHNSINVVRG-PV--NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHP  273 (597)
T ss_dssp             CSE-----EECCTTCSEEECCSSCCCEEEC-SC--CSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGG
T ss_pred             ccc-----ccCCchhheeeccCCccccccc-cc--CCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHHH
Confidence            432     1222345555555555542221 11  13445555555554432  33444444444444444444444444


Q ss_pred             hhcCCCCCEEEccCCcCcccCCcccccCccccCcCCCCCCCCCCcccCCCceeEEeEEEeecCCchhhhhhcccceEEEc
Q 004747          488 LFSFQAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVGMDL  567 (732)
Q Consensus       488 ~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdL  567 (732)
                      +..                                                                    +++|+.|+|
T Consensus       274 ~~~--------------------------------------------------------------------l~~L~~L~L  285 (597)
T 3oja_B          274 FVK--------------------------------------------------------------------MQRLERLYI  285 (597)
T ss_dssp             GTT--------------------------------------------------------------------CSSCCEEEC
T ss_pred             hcC--------------------------------------------------------------------ccCCCEEEC
Confidence            444                                                                    445555566


Q ss_pred             cCCcccccCCcccccccCCceeecccccceecCCc-ccCccCCcEEeCCCCcCcccCCcCCCCCCCCCEEEcccCcceee
Q 004747          568 SDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGF  646 (732)
Q Consensus       568 s~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~-l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~  646 (732)
                      ++|++++ +|..+..+++|+.|+|++|.+++ +|. +..+++|+.|+|++|.+++..   +..+++|++|++++|++++.
T Consensus       286 s~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~~-i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~~  360 (597)
T 3oja_B          286 SNNRLVA-LNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCN  360 (597)
T ss_dssp             TTSCCCE-EECSSSCCTTCCEEECCSSCCCC-CGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHH
T ss_pred             CCCCCCC-CCcccccCCCCcEEECCCCCCCc-cCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCCh
Confidence            6666653 45555667778888888888874 444 777888888888888887552   56678899999999998875


Q ss_pred             CCCCCCCCCcCc-cccCCCCCCCCC
Q 004747          647 VPWKQGYQKFPG-AFAGNPNLCLES  670 (732)
Q Consensus       647 ip~~~~~~~~~~-~~~gn~~lcg~~  670 (732)
                      .+. ..+..+.. .+.+++..|+.+
T Consensus       361 ~~~-~~~~~~~~~~~~~~~~~C~~~  384 (597)
T 3oja_B          361 SLR-ALFRNVARPAVDDADQHCKID  384 (597)
T ss_dssp             HHH-HHTTTCCTTTBCCCCCCCCTT
T ss_pred             hHH-HHHHHHhhhccccccccCCcc
Confidence            321 12333434 678888888763

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=2.4e-33  Score=318.94  Aligned_cols=310  Identities=23%  Similarity=0.234  Sum_probs=215.9

Q ss_pred             CCCCCCEEECCCCCCCCcccccccCCCCCCEEECCCCCCCCCCCccccCCCCCCEEeCCCCCCCCCcCCchhhhcccCCc
Q 004747          104 KLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLE  183 (732)
Q Consensus       104 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~~L~  183 (732)
                      .+.+++.+++++|.+....+..|..+++|++|+|++|.+++..|..|+.+++|++|+|++| .+.+..|..++.+ ++|+
T Consensus        49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l-~~L~  126 (597)
T 3oja_B           49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNV-PLLT  126 (597)
T ss_dssp             GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTC-TTCC
T ss_pred             cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCC-cCCCCCHHHHcCC-CCCC
Confidence            3556667777776666544445566677777777777776666666667777777777766 4555555556666 6677


Q ss_pred             EEEeeCcccccccCcccCCCCCCCEEEeecccCCCcccccc---ccccEEECCCCcCccccCchhhcccccCeeeCCCCc
Q 004747          184 KLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFY---QSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNS  260 (732)
Q Consensus       184 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~---~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~  260 (732)
                      +|+|++|.+++..+..|.++++|++|++++|.+++..+..+   .+|++|++++|.+++..   +..+++|+.|++++|.
T Consensus       127 ~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~  203 (597)
T 3oja_B          127 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNL  203 (597)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSC
T ss_pred             EEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCc
Confidence            77777777664444445667777777777777766665543   34677777777666532   4456677777777776


Q ss_pred             cccccchhhhccCCCCEEEeccCCCCCcCccccccCcCCcEEEccCCCCCCCCchhhhhcCCCCCccEEeCCCCcccCCC
Q 004747          261 VVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEI  340 (732)
Q Consensus       261 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~L~~L~Ls~n~l~~~~  340 (732)
                      +.+.     ...++|++|++++|.++...+. +  .++|+.|++++|.+++.  ..+..++   +|+.|++++|.+++..
T Consensus       204 l~~l-----~~~~~L~~L~ls~n~l~~~~~~-~--~~~L~~L~L~~n~l~~~--~~l~~l~---~L~~L~Ls~N~l~~~~  270 (597)
T 3oja_B          204 LSTL-----AIPIAVEELDASHNSINVVRGP-V--NVELTILKLQHNNLTDT--AWLLNYP---GLVEVDLSYNELEKIM  270 (597)
T ss_dssp             CSEE-----ECCTTCSEEECCSSCCCEEECS-C--CSCCCEEECCSSCCCCC--GGGGGCT---TCSEEECCSSCCCEEE
T ss_pred             cccc-----cCCchhheeeccCCcccccccc-c--CCCCCEEECCCCCCCCC--hhhccCC---CCCEEECCCCccCCCC
Confidence            6542     2345677788877777643222 1  35788888888888753  4455555   7888888888888777


Q ss_pred             cccccCCCCCCEEeccCccCCCccccccCCCCCCCEEEccCCcCccccCccccCCcCcceeecccccccccCcccccCCC
Q 004747          341 PLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALD  420 (732)
Q Consensus       341 p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~  420 (732)
                      |..+..+++|+.|+|++|.+++ +|..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|.+.+..   +..++
T Consensus       271 ~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~  345 (597)
T 3oja_B          271 YHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHH  345 (597)
T ss_dssp             SGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTC
T ss_pred             HHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC---hhhcC
Confidence            8888888888888888888875 5666777888888888888887 57777788888888888888887653   56778


Q ss_pred             CCcEEEcccCceeeec
Q 004747          421 SLKILDISNNQISGEI  436 (732)
Q Consensus       421 ~L~~L~L~~n~l~~~~  436 (732)
                      +|+.|++++|.+.+..
T Consensus       346 ~L~~L~l~~N~~~~~~  361 (597)
T 3oja_B          346 TLKNLTLSHNDWDCNS  361 (597)
T ss_dssp             CCSEEECCSSCEEHHH
T ss_pred             CCCEEEeeCCCCCChh
Confidence            9999999999987653

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=4.2e-32  Score=287.79  Aligned_cols=305  Identities=21%  Similarity=0.300  Sum_probs=194.0

Q ss_pred             hccCCCCEEEeccCCCCCcCccccccCcCCcEEEccCCCCCCCCchhhhhcCCCCCccEEeCCCCcccCCCcccccCCCC
Q 004747          270 ASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKS  349 (732)
Q Consensus       270 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~  349 (732)
                      ..+++|++|++++|.+... + .+..+++|++|++++|.+++ ++. +..+.   +|++|++++|.+++ ++ .+..+++
T Consensus        41 ~~l~~L~~L~l~~~~i~~~-~-~~~~~~~L~~L~l~~n~i~~-~~~-~~~l~---~L~~L~L~~n~i~~-~~-~~~~l~~  111 (347)
T 4fmz_A           41 EELESITKLVVAGEKVASI-Q-GIEYLTNLEYLNLNGNQITD-ISP-LSNLV---KLTNLYIGTNKITD-IS-ALQNLTN  111 (347)
T ss_dssp             HHHTTCSEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCCC-CGG-GTTCT---TCCEEECCSSCCCC-CG-GGTTCTT
T ss_pred             hhcccccEEEEeCCccccc-h-hhhhcCCccEEEccCCcccc-chh-hhcCC---cCCEEEccCCcccC-ch-HHcCCCc
Confidence            3445555555555555422 2 24455555555555555542 222 33222   55555555555552 22 3555556


Q ss_pred             CCEEeccCccCCCccccccCCCCCCCEEEccCCcCccccCccccCCcCcceeecccccccccCcccccCCCCCcEEEccc
Q 004747          350 LQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISN  429 (732)
Q Consensus       350 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~  429 (732)
                      |++|++++|.+++. +. +..+++|++|++++|.....++ .+..+++|+.|++++|.+.+..+  +..+++|+.|++++
T Consensus       112 L~~L~l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~  186 (347)
T 4fmz_A          112 LRELYLNEDNISDI-SP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNY  186 (347)
T ss_dssp             CSEEECTTSCCCCC-GG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTT
T ss_pred             CCEEECcCCcccCc-hh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccC
Confidence            66666666655533 22 5556666666666664443322 25556666666666666554433  56677777788877


Q ss_pred             CceeeeccccCCCCCCCCEEEccCCcccccchhhhhcCCCCCEEEcccCCCccccchhhhcCCCCCEEEccCCcCcccCC
Q 004747          430 NQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIP  509 (732)
Q Consensus       430 n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~ls~N~l~~~~p  509 (732)
                      |.+.+..+  +..+++|+++++++|.+.+..+  +..+++|++|++++|++++..+  +..+++|++|++++|.+++. +
T Consensus       187 n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~  259 (347)
T 4fmz_A          187 NQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI-N  259 (347)
T ss_dssp             SCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-G
T ss_pred             Cccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC-h
Confidence            77774433  6677788888888887775544  6777888888888888774433  77778888888888877542 1


Q ss_pred             cccccCccccCcCCCCCCCCCCcccCCCceeEEeEEEeecCCchhhhhhcccceEEEccCCcccccCCcccccccCCcee
Q 004747          510 DGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGTIPKGLFQLQGLEYL  589 (732)
Q Consensus       510 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L  589 (732)
                      .  +                                           ..+++|+.|++++|++++ + +.+..+++|++|
T Consensus       260 ~--~-------------------------------------------~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L  292 (347)
T 4fmz_A          260 A--V-------------------------------------------KDLTKLKMLNVGSNQISD-I-SVLNNLSQLNSL  292 (347)
T ss_dssp             G--G-------------------------------------------TTCTTCCEEECCSSCCCC-C-GGGGGCTTCSEE
T ss_pred             h--H-------------------------------------------hcCCCcCEEEccCCccCC-C-hhhcCCCCCCEE
Confidence            1  1                                           126678888888888874 4 357788888888


Q ss_pred             ecccccceecCCc-ccCccCCcEEeCCCCcCcccCCcCCCCCCCCCEEEcccCcce
Q 004747          590 NLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFS  644 (732)
Q Consensus       590 ~Ls~N~l~~~ip~-l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~  644 (732)
                      ++++|.+++..|. +..+++|++|++++|.+++..|  +..+++|++||+++|+++
T Consensus       293 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          293 FLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             ECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             ECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence            8888888877777 7888888888888888887766  777888888888888875

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=7.9e-32  Score=285.69  Aligned_cols=306  Identities=23%  Similarity=0.307  Sum_probs=217.0

Q ss_pred             hcccccCeeeCCCCccccccchhhhccCCCCEEEeccCCCCCcCccccccCcCCcEEEccCCCCCCCCchhhhhcCCCCC
Q 004747          246 ASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAG  325 (732)
Q Consensus       246 ~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~  325 (732)
                      ..+++|++|++++|.+.. ++ .+..+++|++|++++|.+++. +. +..+++|++|++++|.+++ ++ .+..++   +
T Consensus        41 ~~l~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~L~~n~i~~-~~-~~~~l~---~  111 (347)
T 4fmz_A           41 EELESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQITDI-SP-LSNLVKLTNLYIGTNKITD-IS-ALQNLT---N  111 (347)
T ss_dssp             HHHTTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-CG-GGTTCT---T
T ss_pred             hhcccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCccccc-hh-hhcCCcCCEEEccCCcccC-ch-HHcCCC---c
Confidence            445566666666666653 23 256666666666666666543 22 6666677777777766663 22 233333   6


Q ss_pred             ccEEeCCCCcccCCCcccccCCCCCCEEeccCccCCCccccccCCCCCCCEEEccCCcCccccCccccCCcCcceeeccc
Q 004747          326 LVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNN  405 (732)
Q Consensus       326 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~  405 (732)
                      |++|++++|.+++ ++. +..+++|++|++++|.....++. +..+++|++|++++|.+.+..+  +..+++|+.|++++
T Consensus       112 L~~L~l~~n~i~~-~~~-~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~  186 (347)
T 4fmz_A          112 LRELYLNEDNISD-ISP-LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNY  186 (347)
T ss_dssp             CSEEECTTSCCCC-CGG-GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTT
T ss_pred             CCEEECcCCcccC-chh-hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccC
Confidence            7777777777663 333 66677777777777755544433 6677777777777777664333  66677777777777


Q ss_pred             ccccccCcccccCCCCCcEEEcccCceeeeccccCCCCCCCCEEEccCCcccccchhhhhcCCCCCEEEcccCCCccccc
Q 004747          406 NNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLP  485 (732)
Q Consensus       406 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p  485 (732)
                      |.+.+..+  +..+++|+.|++++|.+.+..+  +..+++|++|++++|.+++..+  +..+++|++|++++|.+++.  
T Consensus       187 n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--  258 (347)
T 4fmz_A          187 NQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--  258 (347)
T ss_dssp             SCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--
T ss_pred             Cccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--
Confidence            77765443  6778888888888888875544  6778888888888888886544  77888889999988888753  


Q ss_pred             hhhhcCCCCCEEEccCCcCcccCCcccccCccccCcCCCCCCCCCCcccCCCceeEEeEEEeecCCchhhhhhcccceEE
Q 004747          486 NWLFSFQAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVGM  565 (732)
Q Consensus       486 ~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L  565 (732)
                      ..+..+++|++|++++|++++. +.  +                                           ..+++|+.|
T Consensus       259 ~~~~~l~~L~~L~l~~n~l~~~-~~--~-------------------------------------------~~l~~L~~L  292 (347)
T 4fmz_A          259 NAVKDLTKLKMLNVGSNQISDI-SV--L-------------------------------------------NNLSQLNSL  292 (347)
T ss_dssp             GGGTTCTTCCEEECCSSCCCCC-GG--G-------------------------------------------GGCTTCSEE
T ss_pred             hhHhcCCCcCEEEccCCccCCC-hh--h-------------------------------------------cCCCCCCEE
Confidence            4678888999999999888643 11  1                                           126788999


Q ss_pred             EccCCcccccCCcccccccCCceeecccccceecCCcccCccCCcEEeCCCCcCc
Q 004747          566 DLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLT  620 (732)
Q Consensus       566 dLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~l~~l~~L~~LdLs~N~l~  620 (732)
                      ++++|++++..|..+..+++|++|++++|.+++..| +..+++|++||+++|.++
T Consensus       293 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          293 FLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             ECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG-GGGCTTCSEESSSCC---
T ss_pred             ECcCCcCCCcChhHhhccccCCEEEccCCccccccC-hhhhhccceeehhhhccc
Confidence            999999998888889999999999999999987666 888999999999999886

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=100.00  E-value=7.5e-33  Score=290.17  Aligned_cols=276  Identities=22%  Similarity=0.233  Sum_probs=173.3

Q ss_pred             CCHHhHHHHHHHHhcC-CCCCCCCCCCC-----CCCCCCccceeecC--------CCCcEEEEEcCCCCCcccccccccC
Q 004747           39 LNLEDKASLLLFKSLV-QDPTQKLSSWV-----GSNCTNWTGVACNF--------QTGHVVSINLTDTSLSGQVHPRLCK  104 (732)
Q Consensus        39 ~~~~~~~~l~~~k~~~-~~~~~~l~~w~-----~~~~c~w~gv~c~~--------~~~~v~~L~L~~~~l~~~~~~~l~~  104 (732)
                      ...++++||++||+.+ .++.+.+.+|.     ..++|.|.|+.|+.        ...+|+.|+|+++.++ .+|+.+++
T Consensus        24 ~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~~l~~  102 (328)
T 4fcg_A           24 ALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFR  102 (328)
T ss_dssp             CCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCSCGGG
T ss_pred             cCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcChhhhh
Confidence            3456778999999988 45656667882     56899999999952        3467788888888776 66777777


Q ss_pred             CCCCCEEECCCCCCCCcccccccCCCCCCEEECCCCCCCCCCCccccCCCCCCEEeCCCCCCCCCcCCchhhhcccCCcE
Q 004747          105 LSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEK  184 (732)
Q Consensus       105 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~~L~~  184 (732)
                      +++|++|+|++|.++ .+|..++++++|++|+|++|.++ .+|..++++++|++|++++| ...+.+|..+...      
T Consensus       103 l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n-~~~~~~p~~~~~~------  173 (328)
T 4fcg_A          103 LSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRAC-PELTELPEPLAST------  173 (328)
T ss_dssp             GTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEE-TTCCCCCSCSEEE------
T ss_pred             CCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCC-CCccccChhHhhc------
Confidence            788888888888777 67777777778888888887777 66777777777777777776 3445555544320      


Q ss_pred             EEeeCcccccccCcccCCCCCCCEEEeecccCCCccccccccccEEECCCCcCccccCchhhcccccCeeeCCCCccccc
Q 004747          185 LDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGG  264 (732)
Q Consensus       185 L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~  264 (732)
                                ..+..+.++++|++|++++|.++                      .+|..+..+++|++|++++|.+++ 
T Consensus       174 ----------~~~~~~~~l~~L~~L~L~~n~l~----------------------~lp~~l~~l~~L~~L~L~~N~l~~-  220 (328)
T 4fcg_A          174 ----------DASGEHQGLVNLQSLRLEWTGIR----------------------SLPASIANLQNLKSLKIRNSPLSA-  220 (328)
T ss_dssp             ----------C-CCCEEESTTCCEEEEEEECCC----------------------CCCGGGGGCTTCCEEEEESSCCCC-
T ss_pred             ----------cchhhhccCCCCCEEECcCCCcC----------------------cchHhhcCCCCCCEEEccCCCCCc-
Confidence                      01112233555555555555443                      233344445555555555555553 


Q ss_pred             cchhhhccCCCCEEEeccCCCCCcCccccccCcCCcEEEccCCCCCCCCchhhhhcCCCCCccEEeCCCCcccCCCcccc
Q 004747          265 IPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKI  344 (732)
Q Consensus       265 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l  344 (732)
                      +|..++.+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..++   +|++|++++|.+.+.+|..+
T Consensus       221 l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~---~L~~L~L~~n~~~~~iP~~l  297 (328)
T 4fcg_A          221 LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLT---QLEKLDLRGCVNLSRLPSLI  297 (328)
T ss_dssp             CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCT---TCCEEECTTCTTCCCCCGGG
T ss_pred             CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCC---CCCEEeCCCCCchhhccHHH
Confidence            333455555555555555555555555555555555666655555555555555444   56666666666655666666


Q ss_pred             cCCCCCCEEeccCccC
Q 004747          345 TELKSLQALFLSNNLL  360 (732)
Q Consensus       345 ~~l~~L~~L~Ls~n~l  360 (732)
                      ..+++|+.+++..+.+
T Consensus       298 ~~L~~L~~l~l~~~~~  313 (328)
T 4fcg_A          298 AQLPANCIILVPPHLQ  313 (328)
T ss_dssp             GGSCTTCEEECCGGGS
T ss_pred             hhccCceEEeCCHHHH
Confidence            6666666666555443

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.98  E-value=9.3e-35  Score=320.91  Aligned_cols=305  Identities=17%  Similarity=0.111  Sum_probs=162.2

Q ss_pred             CCcEEEeeCccccc----ccCcccCCCCCCCEEEeecccCCCccccc--------cccccEEECCCCcCccc----cCch
Q 004747          181 NLEKLDFSFNSFCG----EIPESLYYLKSLKHLDLEKNNLTGNVHDF--------YQSLLVLNLGSNRFSGT----LPCF  244 (732)
Q Consensus       181 ~L~~L~Ls~n~l~~----~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~--------~~~L~~L~L~~n~l~~~----~~~~  244 (732)
                      +|++|++++|.++.    .++..+..+++|++|++++|.+++..+..        ..+|++|++++|.+++.    ++..
T Consensus        86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~  165 (461)
T 1z7x_W           86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV  165 (461)
T ss_dssp             CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred             ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH
Confidence            46666666666653    44666777777777777777765433221        12366666666666653    2445


Q ss_pred             hhcccccCeeeCCCCccccccchhhhc-----cCCCCEEEeccCCCCCc----CccccccCcCCcEEEccCCCCCCCCch
Q 004747          245 AASAMSLTVLKLDNNSVVGGIPTCIAS-----LQALTHLNLSHNHLNYE----ISPRLVFFEKLLLLDLSFNDLSGPLPS  315 (732)
Q Consensus       245 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~-----l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~~p~  315 (732)
                      +..+++|++|++++|.+.+..+..+..     .++|++|++++|.++..    ++..+..+++|++|++++|.+++....
T Consensus       166 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~  245 (461)
T 1z7x_W          166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMA  245 (461)
T ss_dssp             HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHH
T ss_pred             HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHH
Confidence            556677777777777766544443332     44677777777766643    345555666677777776666532211


Q ss_pred             hhhh-c-CCCCCccEEeCCCCcccCC----CcccccCCCCCCEEeccCccCCCccccccC-----CCCCCCEEEccCCcC
Q 004747          316 KIAQ-T-TEKAGLVLLDLSHNRFSGE----IPLKITELKSLQALFLSNNLLIGEIPARIG-----NLTYLQVIDLSHNML  384 (732)
Q Consensus       316 ~~~~-l-~~~~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~-----~l~~L~~L~Ls~n~l  384 (732)
                      .+.. + ...++|++|++++|.+++.    ++..+..+++|++|++++|.+++..+..+.     ..++|++|++++|.+
T Consensus       246 ~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l  325 (461)
T 1z7x_W          246 ELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSF  325 (461)
T ss_dssp             HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred             HHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCC
Confidence            1111 0 0123566666666665532    344445555666666666655433222221     124555555555555


Q ss_pred             ccccCccccCCcCcceeecccccccccCcccccCCCCCcEEEcccCceeeeccccCC-----CCCCCCEEEccCCcccc-
Q 004747          385 SGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLA-----GLKSLEIVDFSSNNLSG-  458 (732)
Q Consensus       385 ~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~-----~l~~L~~L~Ls~N~l~~-  458 (732)
                      ++.....                    ++..+..+++|++|++++|.+++..+..+.     ..++|++|++++|.+++ 
T Consensus       326 ~~~~~~~--------------------l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~  385 (461)
T 1z7x_W          326 TAACCSH--------------------FSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDS  385 (461)
T ss_dssp             BGGGHHH--------------------HHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHH
T ss_pred             chHHHHH--------------------HHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChh
Confidence            4321100                    233344455666666666655543332221     14566666666666654 


Q ss_pred             ---cchhhhhcCCCCCEEEcccCCCccccchhhh-----cCCCCCEEEccCCcCc
Q 004747          459 ---SLNDAITKWTNLKYFSIARNKLSGNLPNWLF-----SFQAIQMMDFSTNKFM  505 (732)
Q Consensus       459 ---~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~-----~~~~L~~L~ls~N~l~  505 (732)
                         .++..+..+++|++|++++|++++.-...+.     ...+|+.|++.++.+.
T Consensus       386 ~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~  440 (461)
T 1z7x_W          386 SCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS  440 (461)
T ss_dssp             HHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCC
T ss_pred             hHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccC
Confidence               4555555666666666666666533211111     1234566666555544

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.98  E-value=2e-34  Score=318.31  Aligned_cols=190  Identities=18%  Similarity=0.167  Sum_probs=99.6

Q ss_pred             cCCcEEEeeCcccccccCcc-cCCCCCCCEEEeecccCCCccccccccccEEECCCCcCccccCchhhcccccCeeeCCC
Q 004747          180 MNLEKLDFSFNSFCGEIPES-LYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDN  258 (732)
Q Consensus       180 ~~L~~L~Ls~n~l~~~~p~~-l~~l~~L~~L~Ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~  258 (732)
                      ++|++|++++|.++...... +..+++|++|++++|.+++....                 .++..+..+++|++|++++
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~-----------------~l~~~l~~~~~L~~L~Ls~   65 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCK-----------------DISSALRVNPALAELNLRS   65 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHH-----------------HHHHHHHTCTTCCEEECTT
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHH-----------------HHHHHHHhCCCcCEEeCCC
Confidence            46677777777766433322 55666777777777666532111                 2234444555666666666


Q ss_pred             Cccccccchhhh-ccC----CCCEEEeccCCCCC----cCccccccCcCCcEEEccCCCCCCCCchhhhhc--CCCCCcc
Q 004747          259 NSVVGGIPTCIA-SLQ----ALTHLNLSHNHLNY----EISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQT--TEKAGLV  327 (732)
Q Consensus       259 n~l~~~~~~~l~-~l~----~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l--~~~~~L~  327 (732)
                      |.+.+..+..+. .++    +|++|++++|.++.    .++..+..+++|++|++++|.+++..+..+...  ...++|+
T Consensus        66 n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~  145 (461)
T 1z7x_W           66 NELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLE  145 (461)
T ss_dssp             CCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCC
T ss_pred             CcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcce
Confidence            665543333332 233    46666666666653    335556666666666666666654333333321  1122466


Q ss_pred             EEeCCCCcccCC----CcccccCCCCCCEEeccCccCCCccccccC-----CCCCCCEEEccCCcCcc
Q 004747          328 LLDLSHNRFSGE----IPLKITELKSLQALFLSNNLLIGEIPARIG-----NLTYLQVIDLSHNMLSG  386 (732)
Q Consensus       328 ~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~-----~l~~L~~L~Ls~n~l~~  386 (732)
                      +|++++|.+++.    ++..+..+++|++|++++|.+++..+..+.     ..++|++|++++|.+++
T Consensus       146 ~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~  213 (461)
T 1z7x_W          146 KLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTS  213 (461)
T ss_dssp             EEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBT
T ss_pred             EEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcH
Confidence            666666666542    233444456666666666665543332222     23456666666665553

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=3.8e-30  Score=270.58  Aligned_cols=288  Identities=19%  Similarity=0.212  Sum_probs=210.2

Q ss_pred             CCEEEeecccCCCccccccccccEEECCCCcCccccCchhhcccccCeeeCCCCccccccchhhhccCCCCEEEeccCCC
Q 004747          206 LKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHL  285 (732)
Q Consensus       206 L~~L~Ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l  285 (732)
                      ++.++++++.++..+....+.+++|++++|.+++..+..+..+++|++|++++|.+++..|..++.+++|++|++++|.+
T Consensus        33 l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l  112 (330)
T 1xku_A           33 LRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL  112 (330)
T ss_dssp             TTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCC
T ss_pred             CeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcC
Confidence            44444444444333222233455555555555555555677777888888888888777677788888888888888877


Q ss_pred             CCcCccccccCcCCcEEEccCCCCCCCCchhhhhcCCCCCccEEeCCCCcccC--CCcccccCCCCCCEEeccCccCCCc
Q 004747          286 NYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSG--EIPLKITELKSLQALFLSNNLLIGE  363 (732)
Q Consensus       286 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~L~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~Ls~n~l~~~  363 (732)
                      + .+|..+.  ++|++|++++|.+++..+..+..+.   +|++|++++|.++.  ..+..+..+++|++|++++|.++ .
T Consensus       113 ~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~---~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~  185 (330)
T 1xku_A          113 K-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLN---QMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-T  185 (330)
T ss_dssp             S-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCT---TCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-S
T ss_pred             C-ccChhhc--ccccEEECCCCcccccCHhHhcCCc---cccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-c
Confidence            6 4444443  6788888888888766665666655   78888888888753  55667778888888888888887 3


Q ss_pred             cccccCCCCCCCEEEccCCcCccccCccccCCcCcceeecccccccccCcccccCCCCCcEEEcccCceeeeccccCCCC
Q 004747          364 IPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGL  443 (732)
Q Consensus       364 ~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l  443 (732)
                      +|..+.  ++|++|++++|.+++..|..+..+++|+.|++++|.+++..+..+..+++|++|++++|+++ .+|..+..+
T Consensus       186 l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l  262 (330)
T 1xku_A          186 IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADH  262 (330)
T ss_dssp             CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTC
T ss_pred             CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccC
Confidence            555443  78888888888888777788888888888888888888877777888889999999999888 777788888


Q ss_pred             CCCCEEEccCCcccccchhhhhc------CCCCCEEEcccCCCcc--ccchhhhcCCCCCEEEccCCc
Q 004747          444 KSLEIVDFSSNNLSGSLNDAITK------WTNLKYFSIARNKLSG--NLPNWLFSFQAIQMMDFSTNK  503 (732)
Q Consensus       444 ~~L~~L~Ls~N~l~~~~~~~~~~------l~~L~~L~L~~N~l~~--~~p~~~~~~~~L~~L~ls~N~  503 (732)
                      ++|++|++++|++++..+..|..      ...++.+++++|++..  ..|..+..+.+++.+++++|+
T Consensus       263 ~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          263 KYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             SSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred             CCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence            99999999999988766666643      3778899999998863  456778888999999998885

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=2.5e-30  Score=272.26  Aligned_cols=288  Identities=22%  Similarity=0.248  Sum_probs=226.5

Q ss_pred             CCCEEEeecccCCCccccccccccEEECCCCcCccccCchhhcccccCeeeCCCCccccccchhhhccCCCCEEEeccCC
Q 004747          205 SLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNH  284 (732)
Q Consensus       205 ~L~~L~Ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~  284 (732)
                      +++.++++++.++..+.....++++|++++|.+++..|..+..+++|++|++++|.+++..|..++++++|++|++++|.
T Consensus        34 ~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~  113 (332)
T 2ft3_A           34 HLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH  113 (332)
T ss_dssp             ETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSC
T ss_pred             cCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCc
Confidence            45666666666654444444557777777777776667778888888888888888887778888888888888888888


Q ss_pred             CCCcCccccccCcCCcEEEccCCCCCCCCchhhhhcCCCCCccEEeCCCCccc--CCCcccccCCCCCCEEeccCccCCC
Q 004747          285 LNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFS--GEIPLKITELKSLQALFLSNNLLIG  362 (732)
Q Consensus       285 l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~L~~L~Ls~n~l~--~~~p~~l~~l~~L~~L~Ls~n~l~~  362 (732)
                      ++ .+|..+.  ++|++|++++|.+++..+..+..++   +|+.|++++|.++  +..|..+..+ +|++|++++|.+++
T Consensus       114 l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~---~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~  186 (332)
T 2ft3_A          114 LV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLR---NMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG  186 (332)
T ss_dssp             CC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCS---SCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS
T ss_pred             CC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCc---cCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc
Confidence            87 4555444  7888888888888865555566555   8888999988885  3566777777 89999999999885


Q ss_pred             ccccccCCCCCCCEEEccCCcCccccCccccCCcCcceeecccccccccCcccccCCCCCcEEEcccCceeeeccccCCC
Q 004747          363 EIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAG  442 (732)
Q Consensus       363 ~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~  442 (732)
                       +|..+.  ++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|+++ .+|..+..
T Consensus       187 -l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~  262 (332)
T 2ft3_A          187 -IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPD  262 (332)
T ss_dssp             -CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGG
T ss_pred             -cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhc
Confidence             555443  78889999999998877788888999999999999998888878889999999999999998 77888889


Q ss_pred             CCCCCEEEccCCcccccchhhhhc------CCCCCEEEcccCCCc--cccchhhhcCCCCCEEEccCCc
Q 004747          443 LKSLEIVDFSSNNLSGSLNDAITK------WTNLKYFSIARNKLS--GNLPNWLFSFQAIQMMDFSTNK  503 (732)
Q Consensus       443 l~~L~~L~Ls~N~l~~~~~~~~~~------l~~L~~L~L~~N~l~--~~~p~~~~~~~~L~~L~ls~N~  503 (732)
                      +++|++|++++|++++..+..+..      ..+|+.|++++|++.  +..|..+..+++|+.+++++|+
T Consensus       263 l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          263 LKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             CTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             CccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence            999999999999998776666654      367899999999987  5667888889999999998875

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=6.4e-30  Score=268.89  Aligned_cols=295  Identities=20%  Similarity=0.215  Sum_probs=171.1

Q ss_pred             CCCEEECCCCCCCCcccccccCCCCCCEEECCCCCCCCCCCccccCCCCCCEEeCCCCCCCCCcCCchhhhcccCCcEEE
Q 004747          107 FLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLD  186 (732)
Q Consensus       107 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~~L~~L~  186 (732)
                      +++.++++++.++ .+|..+.  +.|++|++++|.+++..+..|+++++|++|++++|                      
T Consensus        32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n----------------------   86 (330)
T 1xku_A           32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINN----------------------   86 (330)
T ss_dssp             ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS----------------------
T ss_pred             CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCC----------------------
Confidence            4677777777766 3454433  56777777777777666656666666666666655                      


Q ss_pred             eeCcccccccCcccCCCCCCCEEEeecccCCCccccccccccEEECCCCcCccccCchhhcccccCeeeCCCCcccc--c
Q 004747          187 FSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVG--G  264 (732)
Q Consensus       187 Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~--~  264 (732)
                          .+++..|..+.++++|++|++++|.++......+.+|++|++++|.+++..+..+..+++|++|++++|.+..  .
T Consensus        87 ----~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  162 (330)
T 1xku_A           87 ----KISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGI  162 (330)
T ss_dssp             ----CCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGB
T ss_pred             ----cCCeeCHHHhcCCCCCCEEECCCCcCCccChhhcccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCc
Confidence                3444445555555555555555555554333333445555555555555555556667777777777776642  4


Q ss_pred             cchhhhccCCCCEEEeccCCCCCcCccccccCcCCcEEEccCCCCCCCCchhhhhcCCCCCccEEeCCCCcccCCCcccc
Q 004747          265 IPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKI  344 (732)
Q Consensus       265 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l  344 (732)
                      .+..+..+++|++|++++|.++. +|..+.  ++|++|++++|.+++..|..+..+.   +|++|++++|.+++..+..+
T Consensus       163 ~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~---~L~~L~Ls~n~l~~~~~~~~  236 (330)
T 1xku_A          163 ENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLN---NLAKLGLSFNSISAVDNGSL  236 (330)
T ss_dssp             CTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCT---TCCEEECCSSCCCEECTTTG
T ss_pred             ChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCC---CCCEEECCCCcCceeChhhc
Confidence            55566667777777777776653 333322  5566666666666555454554444   56666666666655444455


Q ss_pred             cCCCCCCEEeccCccCCCccccccCCCCCCCEEEccCCcCccccCccccCCcCcceeecccccccccCcccccCCCCCcE
Q 004747          345 TELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKI  424 (732)
Q Consensus       345 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  424 (732)
                      ..+++|++|++++|.++ .+|..+..+++|++|++++|.+++..+..|....                  .....+.++.
T Consensus       237 ~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~------------------~~~~~~~l~~  297 (330)
T 1xku_A          237 ANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPG------------------YNTKKASYSG  297 (330)
T ss_dssp             GGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSS------------------CCTTSCCCSE
T ss_pred             cCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcc------------------cccccccccc
Confidence            55666666666666655 4555555666666666666666543333332110                  0012356777


Q ss_pred             EEcccCceee--eccccCCCCCCCCEEEccCCc
Q 004747          425 LDISNNQISG--EIPLTLAGLKSLEIVDFSSNN  455 (732)
Q Consensus       425 L~L~~n~l~~--~~p~~~~~l~~L~~L~Ls~N~  455 (732)
                      |++++|.+..  ..|..|..+.+++.+++++|+
T Consensus       298 l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          298 VSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             EECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred             eEeecCcccccccCccccccccceeEEEecccC
Confidence            7888777653  445667777888888887774

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=3.8e-30  Score=270.82  Aligned_cols=288  Identities=19%  Similarity=0.203  Sum_probs=152.9

Q ss_pred             CCCEEECCCCCCCCcccccccCCCCCCEEECCCCCCCCCCCccccCCCCCCEEeCCCCCCCCCcCCchhhhcccCCcEEE
Q 004747          107 FLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLD  186 (732)
Q Consensus       107 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~~L~~L~  186 (732)
                      +++.++++++.++ .+|..+.  ++|++|++++|.+.+..|..|.+++                          +|++|+
T Consensus        34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~--------------------------~L~~L~   84 (332)
T 2ft3_A           34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQ--------------------------HLYALV   84 (332)
T ss_dssp             ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCT--------------------------TCCEEE
T ss_pred             cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCC--------------------------CCcEEE
Confidence            4555555555554 3333332  3555555555555544444444444                          455555


Q ss_pred             eeCcccccccCcccCCCCCCCEEEeecccCCCccccccccccEEECCCCcCccccCchhhcccccCeeeCCCCcccc--c
Q 004747          187 FSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVG--G  264 (732)
Q Consensus       187 Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~--~  264 (732)
                      +++|.+++..|..+.++++|++|++++|.++...+..+.+|++|++++|.+++..+..+..+++|++|++++|.++.  .
T Consensus        85 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  164 (332)
T 2ft3_A           85 LVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGF  164 (332)
T ss_dssp             CCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCCTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGS
T ss_pred             CCCCccCccCHhHhhCcCCCCEEECCCCcCCccCccccccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCC
Confidence            55555555556666666667777766666654333333345555555555544444445555555555555555532  3


Q ss_pred             cchhhhccCCCCEEEeccCCCCCcCccccccCcCCcEEEccCCCCCCCCchhhhhcCCCCCccEEeCCCCcccCCCcccc
Q 004747          265 IPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKI  344 (732)
Q Consensus       265 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l  344 (732)
                      .+..+..+ +|++|++++|.+++ +|..+.  +                           +|++|++++|.+++..+..+
T Consensus       165 ~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~---------------------------~L~~L~l~~n~i~~~~~~~l  213 (332)
T 2ft3_A          165 EPGAFDGL-KLNYLRISEAKLTG-IPKDLP--E---------------------------TLNELHLDHNKIQAIELEDL  213 (332)
T ss_dssp             CTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--S---------------------------SCSCCBCCSSCCCCCCTTSS
T ss_pred             CcccccCC-ccCEEECcCCCCCc-cCcccc--C---------------------------CCCEEECCCCcCCccCHHHh
Confidence            33344444 44555555544442 222211  3                           45555555555554444455


Q ss_pred             cCCCCCCEEeccCccCCCccccccCCCCCCCEEEccCCcCccccCccccCCcCcceeecccccccccCcccccC------
Q 004747          345 TELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDA------  418 (732)
Q Consensus       345 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~------  418 (732)
                      ..+++|++|++++|.+++..+..+..+++|++|++++|.++ .+|..+..+++|+.|++++|++++..+..+..      
T Consensus       214 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~  292 (332)
T 2ft3_A          214 LRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVK  292 (332)
T ss_dssp             TTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSS
T ss_pred             cCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccc
Confidence            55555555555555555444444555555555555555555 44555555555555555555555444444432      


Q ss_pred             CCCCcEEEcccCcee--eeccccCCCCCCCCEEEccCCc
Q 004747          419 LDSLKILDISNNQIS--GEIPLTLAGLKSLEIVDFSSNN  455 (732)
Q Consensus       419 l~~L~~L~L~~n~l~--~~~p~~~~~l~~L~~L~Ls~N~  455 (732)
                      ...|+.|++++|.+.  +..|..|..+++|+.+++++|+
T Consensus       293 ~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          293 RAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             SCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             cccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence            356788888888876  5566778888888888888774

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.97  E-value=4.9e-32  Score=309.02  Aligned_cols=323  Identities=14%  Similarity=0.041  Sum_probs=178.9

Q ss_pred             ccCCCCEEEeccCCCCC----cCccccccCcCCcEEEccCCCCCCCCchhhhhcCCCCCccEEeCCCCccc---CCCccc
Q 004747          271 SLQALTHLNLSHNHLNY----EISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFS---GEIPLK  343 (732)
Q Consensus       271 ~l~~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~L~~L~Ls~n~l~---~~~p~~  343 (732)
                      .+++|++|++++|.+++    .++..+..+++|+.|++++|.+.+ +|..+..++   +|+.|+++.....   +..+..
T Consensus       190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~---~L~~L~l~~~~~~~~~~~~~~~  265 (592)
T 3ogk_B          190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAA---NLEEFCGGSLNEDIGMPEKYMN  265 (592)
T ss_dssp             HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCT---TCCEEEECBCCCCTTCTTSSSC
T ss_pred             cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhh---HHHhhcccccccccchHHHHHH
Confidence            34444444444444431    122223344444455554444442 333333333   4455554432111   122334


Q ss_pred             ccCCCCCCEEeccCccCCCccccccCCCCCCCEEEccCCcCccccC-ccccCCcCcceeecccccccccCcccccCCCCC
Q 004747          344 ITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIP-LNIVGCFQLLALIVNNNNLSGEIQPELDALDSL  422 (732)
Q Consensus       344 l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L  422 (732)
                      +..+++|+.|+++++. .+.+|..+..+++|++|++++|.+++... ..+..+++|+.|++.++...+.++.....+++|
T Consensus       266 l~~~~~L~~L~l~~~~-~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L  344 (592)
T 3ogk_B          266 LVFPRKLCRLGLSYMG-PNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQL  344 (592)
T ss_dssp             CCCCTTCCEEEETTCC-TTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTC
T ss_pred             hhccccccccCccccc-hhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCC
Confidence            4455566666665542 22455555556666666666666543322 223455666666665222222233333556777


Q ss_pred             cEEEccc-----------Cceeee-ccccCCCCCCCCEEEccCCcccccchhhhhc-CCCCCEEEcc----cCCCccc--
Q 004747          423 KILDISN-----------NQISGE-IPLTLAGLKSLEIVDFSSNNLSGSLNDAITK-WTNLKYFSIA----RNKLSGN--  483 (732)
Q Consensus       423 ~~L~L~~-----------n~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~L~----~N~l~~~--  483 (732)
                      ++|++++           |.+++. ++.....+++|++|+++.|.+++..+..+.. +++|+.|+++    .|.+++.  
T Consensus       345 ~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~  424 (592)
T 3ogk_B          345 KRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPL  424 (592)
T ss_dssp             CEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCC
T ss_pred             CEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchH
Confidence            7777773           455433 2222345777888888777777766666654 7788888885    5566642  


Q ss_pred             ---cchhhhcCCCCCEEEccCCc--CcccCCcccccCccccCcCCCCCCCCCCcccCCCceeEEeEEEeecCCchhhhhh
Q 004747          484 ---LPNWLFSFQAIQMMDFSTNK--FMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQ  558 (732)
Q Consensus       484 ---~p~~~~~~~~L~~L~ls~N~--l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  558 (732)
                         ++..+..+++|+.|++++|.  +++..+..+                                           ...
T Consensus       425 ~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~-------------------------------------------~~~  461 (592)
T 3ogk_B          425 DNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYI-------------------------------------------GQY  461 (592)
T ss_dssp             HHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHH-------------------------------------------HHS
T ss_pred             HHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHH-------------------------------------------HHh
Confidence               44446667888888886543  332221111                                           112


Q ss_pred             cccceEEEccCCccccc-CCcccccccCCceeecccccceec-CCc-ccCccCCcEEeCCCCcCcccCCcCC-CCCCCCC
Q 004747          559 LFSAVGMDLSDNLLHGT-IPKGLFQLQGLEYLNLSFNFLDGQ-VPG-LYRLRSLRALDLSHNSLTGQIPGNI-SSLQELT  634 (732)
Q Consensus       559 l~~L~~LdLs~N~l~g~-ip~~l~~l~~L~~L~Ls~N~l~~~-ip~-l~~l~~L~~LdLs~N~l~~~ip~~l-~~l~~L~  634 (732)
                      +++|+.|++++|++++. ++..+..+++|++|++++|.+++. ++. +..+++|++|+|++|++++.....+ ..++.+.
T Consensus       462 ~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~  541 (592)
T 3ogk_B          462 SPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWN  541 (592)
T ss_dssp             CTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEE
T ss_pred             CccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcE
Confidence            56788888888888763 444556778888888888887654 333 4568888888888888876543333 2456666


Q ss_pred             EEEcccC
Q 004747          635 LLNLSYN  641 (732)
Q Consensus       635 ~L~ls~N  641 (732)
                      ...+..+
T Consensus       542 ~~~~~~~  548 (592)
T 3ogk_B          542 IELIPSR  548 (592)
T ss_dssp             EEEECCC
T ss_pred             EEEecCc
Confidence            6555544

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.96  E-value=4.7e-31  Score=300.91  Aligned_cols=403  Identities=14%  Similarity=0.082  Sum_probs=206.8

Q ss_pred             CCCCCCEEeCCCCCCCCCcCCchhhhcccC-CcEEEeeCcc-ccc-ccCcccCCCCCCCEEEeecccCCCcc-------c
Q 004747          152 KLRNLRELILKGNPELGGVFPGWVGNFSMN-LEKLDFSFNS-FCG-EIPESLYYLKSLKHLDLEKNNLTGNV-------H  221 (732)
Q Consensus       152 ~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~~-L~~L~Ls~n~-l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~-------~  221 (732)
                      .+++|++|+|++| .+++..+.++....++ |++|++++|. ++. .++....++++|++|+|++|.+++..       +
T Consensus       110 ~~~~L~~L~L~~~-~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~  188 (592)
T 3ogk_B          110 NLRQLKSVHFRRM-IVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELA  188 (592)
T ss_dssp             HCTTCCEEEEESC-BCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHH
T ss_pred             hCCCCCeEEeecc-EecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHH
Confidence            4555555555555 2333333333331123 6666666554 111 11222235666666666666654431       1


Q ss_pred             cccccccEEECCCCcCc----cccCchhhcccccCeeeCCCCccccccchhhhccCCCCEEEeccCCCC---CcCccccc
Q 004747          222 DFYQSLLVLNLGSNRFS----GTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLN---YEISPRLV  294 (732)
Q Consensus       222 ~~~~~L~~L~L~~n~l~----~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~---~~~~~~l~  294 (732)
                      ..+++|++|++++|.++    +.++..+.++++|++|++++|.+.+ ++..+..+++|++|+++.....   ...+..+.
T Consensus       189 ~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~  267 (592)
T 3ogk_B          189 QHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLV  267 (592)
T ss_dssp             HHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCC
T ss_pred             hcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhh
Confidence            12344555555555554    2334445566777777777777664 5566677777777777643222   12233444


Q ss_pred             cCcCCcEEEccCCCCCCCCchhhhhcCCCCCccEEeCCCCcccCCCc-ccccCCCCCCEEeccCccCCCccccccCCCCC
Q 004747          295 FFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIP-LKITELKSLQALFLSNNLLIGEIPARIGNLTY  373 (732)
Q Consensus       295 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~  373 (732)
                      .+++|+.++++++.. +.+|..+..++   +|++|++++|.+++... ..+..+++|++|+++++...+.++.....+++
T Consensus       268 ~~~~L~~L~l~~~~~-~~l~~~~~~~~---~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~  343 (592)
T 3ogk_B          268 FPRKLCRLGLSYMGP-NEMPILFPFAA---QIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQ  343 (592)
T ss_dssp             CCTTCCEEEETTCCT-TTGGGGGGGGG---GCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTT
T ss_pred             ccccccccCccccch-hHHHHHHhhcC---CCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCC
Confidence            555555555555322 23343333333   45555555555432221 22344455555555422111122222233444


Q ss_pred             CCEEEccC-CcCccccCccccCCcCcceeeccccccccc-CcccccCCCCCcEEEcccCceeeeccccCCC-CCCCCEEE
Q 004747          374 LQVIDLSH-NMLSGSIPLNIVGCFQLLALIVNNNNLSGE-IQPELDALDSLKILDISNNQISGEIPLTLAG-LKSLEIVD  450 (732)
Q Consensus       374 L~~L~Ls~-n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~-l~~L~~L~  450 (732)
                      |++|++++ ....    ..-..          .+.+++. +......+++|++|+++.|.+++..+..+.. +++|+.|+
T Consensus       344 L~~L~L~~g~~~~----~~~~~----------~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~  409 (592)
T 3ogk_B          344 LKRLRIERGADEQ----GMEDE----------EGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFR  409 (592)
T ss_dssp             CCEEEEECCCCSS----TTSST----------TCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEE
T ss_pred             CCEEEeecCcccc----ccccc----------cCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEE
Confidence            45554441 0000    00000          1233322 1112334667777777777776655554443 67777777


Q ss_pred             cc----CCccccc-----chhhhhcCCCCCEEEcccCC--Cccccchhhh-cCCCCCEEEccCCcCcccCCcccccCccc
Q 004747          451 FS----SNNLSGS-----LNDAITKWTNLKYFSIARNK--LSGNLPNWLF-SFQAIQMMDFSTNKFMGFIPDGNFNFSLN  518 (732)
Q Consensus       451 Ls----~N~l~~~-----~~~~~~~l~~L~~L~L~~N~--l~~~~p~~~~-~~~~L~~L~ls~N~l~~~~p~~~~~~~~~  518 (732)
                      ++    .|.+++.     ++..+..+++|++|++++|.  +++..+..+. .+++|++|++++|++++......      
T Consensus       410 l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~------  483 (592)
T 3ogk_B          410 LVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEF------  483 (592)
T ss_dssp             EEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHH------
T ss_pred             EeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHH------
Confidence            75    5566653     44445667778888776433  5544444443 37778888888777654211111      


Q ss_pred             cCcCCCCCCCCCCcccCCCceeEEeEEEeecCCchhhhhhcccceEEEccCCccccc-CCcccccccCCceeecccccce
Q 004747          519 FNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGT-IPKGLFQLQGLEYLNLSFNFLD  597 (732)
Q Consensus       519 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~-ip~~l~~l~~L~~L~Ls~N~l~  597 (732)
                                                           ...+++|+.|++++|.+++. ++.....+++|++|+|++|+++
T Consensus       484 -------------------------------------~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it  526 (592)
T 3ogk_B          484 -------------------------------------SRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRAS  526 (592)
T ss_dssp             -------------------------------------HTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCC
T ss_pred             -------------------------------------HhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCC
Confidence                                                 12256778888888887655 3444456888888888888887


Q ss_pred             ecCCc-c-cCccCCcEEeCCCC
Q 004747          598 GQVPG-L-YRLRSLRALDLSHN  617 (732)
Q Consensus       598 ~~ip~-l-~~l~~L~~LdLs~N  617 (732)
                      +.-.. + ..++.+....+..+
T Consensus       527 ~~~~~~l~~~~p~l~~~~~~~~  548 (592)
T 3ogk_B          527 MTGQDLMQMARPYWNIELIPSR  548 (592)
T ss_dssp             TTCTTGGGGCCTTEEEEEECCC
T ss_pred             HHHHHHHHHhCCCcEEEEecCc
Confidence            54322 2 34666666655554

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.96  E-value=1.1e-29  Score=269.61  Aligned_cols=285  Identities=21%  Similarity=0.187  Sum_probs=182.1

Q ss_pred             CCCCCCccceeecCCCCcEEEEEcCCCCCcccccccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEECCCCCCCCC
Q 004747           66 GSNCTNWTGVACNFQTGHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGV  145 (732)
Q Consensus        66 ~~~~c~w~gv~c~~~~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~  145 (732)
                      ...+|.|.++ |+          .++++++ .+|..+.  ++|++|++++|++++..+..|.++++|++|++++|.+++.
T Consensus        26 ~~~~C~~~~~-c~----------~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~   91 (353)
T 2z80_A           26 ASLSCDRNGI-CK----------GSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTI   91 (353)
T ss_dssp             -CCEECTTSE-EE----------CCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEE
T ss_pred             cCCCCCCCeE-ee----------CCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCcc
Confidence            3456888877 65          3455555 4555554  5899999999999977676899999999999999999988


Q ss_pred             CCccccCCCCCCEEeCCCCCCCCCcCCchhhhcccCCcEEEeeCcccccccC-cccCCCCCCCEEEeeccc-CCCccccc
Q 004747          146 VPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIP-ESLYYLKSLKHLDLEKNN-LTGNVHDF  223 (732)
Q Consensus       146 ~p~~~~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~Ls~n~-l~~~~~~~  223 (732)
                      .|..|.++++|++|++++| .+++..+..+..+ ++|++|++++|.+++..+ ..+.++++|++|++++|. +.+..+  
T Consensus        92 ~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l-~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~--  167 (353)
T 2z80_A           92 EEDSFSSLGSLEHLDLSYN-YLSNLSSSWFKPL-SSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQR--  167 (353)
T ss_dssp             CTTTTTTCTTCCEEECCSS-CCSSCCHHHHTTC-TTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECT--
T ss_pred             CHhhcCCCCCCCEEECCCC-cCCcCCHhHhCCC-ccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCH--
Confidence            8888999999999999999 4555444447777 899999999999885433 368889999999998884 443333  


Q ss_pred             cccccEEECCCCcCccccCchhhcccccCeeeCCCCccccccchhhhccCCCCEEEeccCCCCCcCccccccCcCCcEEE
Q 004747          224 YQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLD  303 (732)
Q Consensus       224 ~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~  303 (732)
                                         ..+..+++|++|++++|.+.+..|..++.+++|++|++++|.++...+..+..+++|+.|+
T Consensus       168 -------------------~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~  228 (353)
T 2z80_A          168 -------------------KDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLE  228 (353)
T ss_dssp             -------------------TTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEE
T ss_pred             -------------------HHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEE
Confidence                               3334444444555555544444444444555555555555544322222223345555555


Q ss_pred             ccCCCCCCCCchhhhhcCCCCCccEEeCCCCcccC----CCcccccCCCCCCEEeccCccCCCccccc-cCCCCCCCEEE
Q 004747          304 LSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSG----EIPLKITELKSLQALFLSNNLLIGEIPAR-IGNLTYLQVID  378 (732)
Q Consensus       304 Ls~n~l~~~~p~~~~~l~~~~~L~~L~Ls~n~l~~----~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~-l~~l~~L~~L~  378 (732)
                      +++|.+++..+..+........++.++++++.+++    .+|..+..+++|++|++++|+++ .+|.. +..+++|++|+
T Consensus       229 L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~  307 (353)
T 2z80_A          229 LRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIW  307 (353)
T ss_dssp             EESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEE
T ss_pred             CCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEE
Confidence            55555544333333222222345555665555543    35566667777777777777776 44444 46777777777


Q ss_pred             ccCCcCcccc
Q 004747          379 LSHNMLSGSI  388 (732)
Q Consensus       379 Ls~n~l~~~~  388 (732)
                      +++|.+.+..
T Consensus       308 L~~N~~~~~~  317 (353)
T 2z80_A          308 LHTNPWDCSC  317 (353)
T ss_dssp             CCSSCBCCCH
T ss_pred             eeCCCccCcC
Confidence            7777766543

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.96  E-value=9.8e-29  Score=262.37  Aligned_cols=278  Identities=20%  Similarity=0.170  Sum_probs=152.9

Q ss_pred             CcEEEccCCCCCCCCchhhhhcCCCCCccEEeCCCCcccCCCcccccCCCCCCEEeccCccCCCccccccCCCCCCCEEE
Q 004747          299 LLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVID  378 (732)
Q Consensus       299 L~~L~Ls~n~l~~~~p~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~  378 (732)
                      ....+++++.++ .+|..+..     +|++|++++|.+++..+..+..+++|++|++++|.+++..|..+.++++|++|+
T Consensus        33 ~~~c~~~~~~l~-~iP~~~~~-----~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  106 (353)
T 2z80_A           33 NGICKGSSGSLN-SIPSGLTE-----AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLD  106 (353)
T ss_dssp             TSEEECCSTTCS-SCCTTCCT-----TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred             CeEeeCCCCCcc-cccccccc-----cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEE
Confidence            334455555554 34433221     455666666666543344555566666666666666555455556666666666


Q ss_pred             ccCCcCccccCccccCCcCcceeecccccccccCc-ccccCCCCCcEEEcccC-ceeeeccccCCCCCCCCEEEccCCcc
Q 004747          379 LSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQ-PELDALDSLKILDISNN-QISGEIPLTLAGLKSLEIVDFSSNNL  456 (732)
Q Consensus       379 Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~p~~~~~l~~L~~L~Ls~N~l  456 (732)
                      +++|.+++..+..+..+++|++|++++|++.+... ..+..+++|++|++++| .+.+..+..+.++++|++|++++|.+
T Consensus       107 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l  186 (353)
T 2z80_A          107 LSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDL  186 (353)
T ss_dssp             CCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred             CCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCc
Confidence            66666554333334555555555555555553333 34555666666666666 34444455566666666666666666


Q ss_pred             cccchhhhhcCCCCCEEEcccCCCccccchhhhcCCCCCEEEccCCcCcccCCcccccCccccCcCCCCCCCCCCcccCC
Q 004747          457 SGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLP  536 (732)
Q Consensus       457 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  536 (732)
                      ++..|..+..+++|++|++++|++....+..+..+++|+.|++++|.+++..+..+.                       
T Consensus       187 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~-----------------------  243 (353)
T 2z80_A          187 QSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELS-----------------------  243 (353)
T ss_dssp             CEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC--------------------------
T ss_pred             CccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccc-----------------------
Confidence            655566666666666666666666432222333456666666666665543222110                       


Q ss_pred             CceeEEeEEEeecCCchhhhhhcccceEEEccCCcccccCCcccccccCCceeeccccccee----cCCc-ccCccCCcE
Q 004747          537 RSMVIRISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDG----QVPG-LYRLRSLRA  611 (732)
Q Consensus       537 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~----~ip~-l~~l~~L~~  611 (732)
                                                                .......++.++|++|.+++    .+|. +..+++|++
T Consensus       244 ------------------------------------------~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~  281 (353)
T 2z80_A          244 ------------------------------------------TGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLE  281 (353)
T ss_dssp             ---------------------------------------------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCE
T ss_pred             ------------------------------------------cccccchhhccccccccccCcchhhhHHHHhcccCCCE
Confidence                                                      00012233344444444433    3444 666777777


Q ss_pred             EeCCCCcCcccCCcC-CCCCCCCCEEEcccCcceeeCC
Q 004747          612 LDLSHNSLTGQIPGN-ISSLQELTLLNLSYNSFSGFVP  648 (732)
Q Consensus       612 LdLs~N~l~~~ip~~-l~~l~~L~~L~ls~N~l~g~ip  648 (732)
                      |||++|+++ .+|.. |..+++|++|++++|++.+..|
T Consensus       282 L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          282 LEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             EECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             EECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence            777777777 44444 5777788888888887777655

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.96  E-value=8.9e-28  Score=249.70  Aligned_cols=252  Identities=25%  Similarity=0.276  Sum_probs=193.6

Q ss_pred             ccEEeCCCCcccCCCcccccCCCCCCEEeccCccCCCccccccCCCCCCCEEEccCCcCccccCccccCCcCcceeeccc
Q 004747          326 LVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNN  405 (732)
Q Consensus       326 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~  405 (732)
                      -+.++++++.++ .+|..+.  ++|++|++++|.+++..+..+.++++|++|++++|.++...                 
T Consensus         9 ~~~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-----------------   68 (306)
T 2z66_A            9 GTEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKG-----------------   68 (306)
T ss_dssp             TTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEE-----------------
T ss_pred             CCEEEcCCCCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCccc-----------------
Confidence            346777777776 5665443  57777888777777444444677777777777777765211                 


Q ss_pred             ccccccCcccccCCCCCcEEEcccCceeeeccccCCCCCCCCEEEccCCcccccch-hhhhcCCCCCEEEcccCCCcccc
Q 004747          406 NNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLN-DAITKWTNLKYFSIARNKLSGNL  484 (732)
Q Consensus       406 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~  484 (732)
                           ..+..+..+++|++|++++|.++ .+|..+..+++|++|++++|++++..+ ..+..+++|++|++++|.+.+..
T Consensus        69 -----~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~  142 (306)
T 2z66_A           69 -----CCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF  142 (306)
T ss_dssp             -----EEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECS
T ss_pred             -----CcccccccccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccc
Confidence                 11233455677888888888877 455667778888888888888876544 56777888888888888888777


Q ss_pred             chhhhcCCCCCEEEccCCcCcc-cCCcccccCccccCcCCCCCCCCCCcccCCCceeEEeEEEeecCCchhhhhhcccce
Q 004747          485 PNWLFSFQAIQMMDFSTNKFMG-FIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAV  563 (732)
Q Consensus       485 p~~~~~~~~L~~L~ls~N~l~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~  563 (732)
                      +..+..+++|++|++++|.+++ .+|..+ .                                           .+++|+
T Consensus       143 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~-------------------------------------------~l~~L~  178 (306)
T 2z66_A          143 NGIFNGLSSLEVLKMAGNSFQENFLPDIF-T-------------------------------------------ELRNLT  178 (306)
T ss_dssp             TTTTTTCTTCCEEECTTCEEGGGEECSCC-T-------------------------------------------TCTTCC
T ss_pred             hhhcccCcCCCEEECCCCccccccchhHH-h-------------------------------------------hCcCCC
Confidence            8888888888888888888875 333321 1                                           267888


Q ss_pred             EEEccCCcccccCCcccccccCCceeecccccceecCCc-ccCccCCcEEeCCCCcCcccCCcCCCCCC-CCCEEEcccC
Q 004747          564 GMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIPGNISSLQ-ELTLLNLSYN  641 (732)
Q Consensus       564 ~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~-l~~l~~L~~LdLs~N~l~~~ip~~l~~l~-~L~~L~ls~N  641 (732)
                      +|++++|++++..|..+..+++|++|+|++|++++..+. +..+++|++|||++|++++..|..+..++ +|++|++++|
T Consensus       179 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N  258 (306)
T 2z66_A          179 FLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN  258 (306)
T ss_dssp             EEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTC
T ss_pred             EEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCC
Confidence            999999999987888899999999999999999977665 88899999999999999999999999984 9999999999


Q ss_pred             cceeeC
Q 004747          642 SFSGFV  647 (732)
Q Consensus       642 ~l~g~i  647 (732)
                      ++++..
T Consensus       259 ~~~~~c  264 (306)
T 2z66_A          259 DFACTC  264 (306)
T ss_dssp             CEECSG
T ss_pred             Ceeccc
Confidence            998753

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.95  E-value=9.4e-28  Score=249.49  Aligned_cols=279  Identities=21%  Similarity=0.211  Sum_probs=179.5

Q ss_pred             EEEeecccCCCccccccccccEEECCCCcCccccCchhhcccccCeeeCCCCccccc--cchhhhccCCCCEEEeccCCC
Q 004747          208 HLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGG--IPTCIASLQALTHLNLSHNHL  285 (732)
Q Consensus       208 ~L~Ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~--~~~~l~~l~~L~~L~L~~n~l  285 (732)
                      .++.+++.++..+.....+|++|++++|.++...+..+..+++|++|++++|.++..  .+..+..+++|++|++++|.+
T Consensus        11 ~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i   90 (306)
T 2z66_A           11 EIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGV   90 (306)
T ss_dssp             EEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSE
T ss_pred             EEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCcc
Confidence            344444444433333333455555555555533344466777788888888877632  356666778888888888877


Q ss_pred             CCcCccccccCcCCcEEEccCCCCCCCCc-hhhhhcCCCCCccEEeCCCCcccCCCcccccCCCCCCEEeccCccCCC-c
Q 004747          286 NYEISPRLVFFEKLLLLDLSFNDLSGPLP-SKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIG-E  363 (732)
Q Consensus       286 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-~  363 (732)
                      + .+|..+..+++|++|++++|.+++..+ ..+..+.   +|++|++++|.+++..+..+..+++|++|++++|.+++ .
T Consensus        91 ~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~---~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  166 (306)
T 2z66_A           91 I-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR---NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF  166 (306)
T ss_dssp             E-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCT---TCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGE
T ss_pred             c-cChhhcCCCCCCCEEECCCCcccccccchhhhhcc---CCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccccc
Confidence            6 456667777888888888887775433 2344444   77788888887776677777777788888888887775 4


Q ss_pred             cccccCCCCCCCEEEccCCcCccccCccccCCcCcceeecccccccccCcccccCCCCCcEEEcccCceeeeccccCCCC
Q 004747          364 IPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGL  443 (732)
Q Consensus       364 ~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l  443 (732)
                      +|..+..+++|++|++++|.+++..|..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++++..|..+..+
T Consensus       167 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~  246 (306)
T 2z66_A          167 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF  246 (306)
T ss_dssp             ECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCC
T ss_pred             chhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhh
Confidence            66777777788888888887776666677777777777777777766666566677777777777777777666666666


Q ss_pred             C-CCCEEEccCCcccccch-hh-hhcCCCCCEEEcccCCCccccchhhhc
Q 004747          444 K-SLEIVDFSSNNLSGSLN-DA-ITKWTNLKYFSIARNKLSGNLPNWLFS  490 (732)
Q Consensus       444 ~-~L~~L~Ls~N~l~~~~~-~~-~~~l~~L~~L~L~~N~l~~~~p~~~~~  490 (732)
                      + +|++|++++|.+++..+ .+ ...+...+.+.+..+.+....|..+.+
T Consensus       247 ~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~~g  296 (306)
T 2z66_A          247 PSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQG  296 (306)
T ss_dssp             CTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGGGTT
T ss_pred             hccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchhhCC
Confidence            3 67777777777764321 11 111222333344445555555554443

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.95  E-value=1.8e-29  Score=262.90  Aligned_cols=249  Identities=24%  Similarity=0.273  Sum_probs=168.7

Q ss_pred             cCCCCCCEEeccCccCCCccccccCCCCCCCEEEccCCcCc-cccCcccc-------CCcCcceeecccccccccCcccc
Q 004747          345 TELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLS-GSIPLNIV-------GCFQLLALIVNNNNLSGEIQPEL  416 (732)
Q Consensus       345 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~-~~~p~~~~-------~~~~L~~L~l~~n~l~~~~~~~~  416 (732)
                      +..++|+.|++++|.+  .+|..+...  |+.|++++|.+. +.+|..+.       ++++|++|++++|.+++.+|..+
T Consensus        40 ~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  115 (312)
T 1wwl_A           40 GGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL  115 (312)
T ss_dssp             EEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred             ccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence            4445666677777766  455544433  666666666663 34554443       56667777777777776666654


Q ss_pred             --cCCCCCcEEEcccCceeeeccccCCCC-----CCCCEEEccCCcccccchhhhhcCCCCCEEEcccCCCccc--cchh
Q 004747          417 --DALDSLKILDISNNQISGEIPLTLAGL-----KSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGN--LPNW  487 (732)
Q Consensus       417 --~~l~~L~~L~L~~n~l~~~~p~~~~~l-----~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~--~p~~  487 (732)
                        ..+++|++|++++|++++. |..+..+     ++|++|++++|++++..+..++.+++|++|++++|++.+.  .|..
T Consensus       116 ~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~  194 (312)
T 1wwl_A          116 LEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISA  194 (312)
T ss_dssp             SSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHH
T ss_pred             HHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHH
Confidence              6677777777777777755 5555544     6777777777777766667777777777777777776654  2333


Q ss_pred             h--hcCCCCCEEEccCCcCcc--cCCcccccCccccCcCCCCCCCCCCcccCCCceeEEeEEEeecCCchhhhhhcccce
Q 004747          488 L--FSFQAIQMMDFSTNKFMG--FIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAV  563 (732)
Q Consensus       488 ~--~~~~~L~~L~ls~N~l~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~  563 (732)
                      +  ..+++|++|++++|++++  .++...                                           ...+++|+
T Consensus       195 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~-------------------------------------------~~~l~~L~  231 (312)
T 1wwl_A          195 LCPLKFPTLQVLALRNAGMETPSGVCSAL-------------------------------------------AAARVQLQ  231 (312)
T ss_dssp             SCTTSCTTCCEEECTTSCCCCHHHHHHHH-------------------------------------------HHTTCCCS
T ss_pred             HHhccCCCCCEEECCCCcCcchHHHHHHH-------------------------------------------HhcCCCCC
Confidence            3  667777777777777752  111111                                           11256778


Q ss_pred             EEEccCCcccccCC-cccccccCCceeecccccceecCCc-ccCccCCcEEeCCCCcCcccCCcCCCCCCCCCEEEcccC
Q 004747          564 GMDLSDNLLHGTIP-KGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYN  641 (732)
Q Consensus       564 ~LdLs~N~l~g~ip-~~l~~l~~L~~L~Ls~N~l~~~ip~-l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N  641 (732)
                      .||+++|++++.+| ..+..+++|++|+|++|+++ .+|. +.  ++|++|||++|++++. |. +..+++|++|++++|
T Consensus       232 ~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N  306 (312)
T 1wwl_A          232 GLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGN  306 (312)
T ss_dssp             EEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTC
T ss_pred             EEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCC
Confidence            88888888887664 34556788888888888887 6666 54  7888888888888866 65 888888888888888


Q ss_pred             cceee
Q 004747          642 SFSGF  646 (732)
Q Consensus       642 ~l~g~  646 (732)
                      ++++.
T Consensus       307 ~l~~~  311 (312)
T 1wwl_A          307 PFLDS  311 (312)
T ss_dssp             TTTCC
T ss_pred             CCCCC
Confidence            88753

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.95  E-value=8.3e-27  Score=256.09  Aligned_cols=247  Identities=18%  Similarity=0.186  Sum_probs=170.8

Q ss_pred             ccEEeCCCCcccCCCcccccCCCCCCEEeccCccCCCccccccCCCCCCCEEEccCCcCccccCccccCCcCcceeeccc
Q 004747          326 LVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNN  405 (732)
Q Consensus       326 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~  405 (732)
                      ...++.++..++ .+|..+.  +++++|+|++|.+++..+..|.++++|++|++++|.+++..+                
T Consensus        56 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~----------------  116 (452)
T 3zyi_A           56 FSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEV----------------  116 (452)
T ss_dssp             SCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECT----------------
T ss_pred             CcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcCh----------------
Confidence            345566666665 4554332  456666666666655555555556666666666655554444                


Q ss_pred             ccccccCcccccCCCCCcEEEcccCceeeeccccCCCCCCCCEEEccCCcccccchhhhhcCCCCCEEEcccCCCcccc-
Q 004747          406 NNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNL-  484 (732)
Q Consensus       406 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-  484 (732)
                              ..|.++++|++|+|++|.+++..+..|.++++|++|++++|++++..+..+..+++|++|++++|+..+.+ 
T Consensus       117 --------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~  188 (452)
T 3zyi_A          117 --------GAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYIS  188 (452)
T ss_dssp             --------TTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEEC
T ss_pred             --------hhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccC
Confidence                    44555566666666666666544455666666666666666666555555666666666666664333333 


Q ss_pred             chhhhcCCCCCEEEccCCcCcccCCcccccCccccCcCCCCCCCCCCcccCCCceeEEeEEEeecCCchhhhhhcccceE
Q 004747          485 PNWLFSFQAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVG  564 (732)
Q Consensus       485 p~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~  564 (732)
                      +..+..+++|++|++++|++++. |.  +                                           ..+++|+.
T Consensus       189 ~~~~~~l~~L~~L~L~~n~l~~~-~~--~-------------------------------------------~~l~~L~~  222 (452)
T 3zyi_A          189 EGAFEGLFNLKYLNLGMCNIKDM-PN--L-------------------------------------------TPLVGLEE  222 (452)
T ss_dssp             TTTTTTCTTCCEEECTTSCCSSC-CC--C-------------------------------------------TTCTTCCE
T ss_pred             hhhccCCCCCCEEECCCCccccc-cc--c-------------------------------------------cccccccE
Confidence            33566777777777777777532 21  0                                           12677889


Q ss_pred             EEccCCcccccCCcccccccCCceeecccccceecCCc-ccCccCCcEEeCCCCcCcccCCcCCCCCCCCCEEEcccCcc
Q 004747          565 MDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSF  643 (732)
Q Consensus       565 LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~-l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l  643 (732)
                      |+|++|++++..|..+.++++|+.|+|++|++++..|. +..+++|+.|||++|++++..+..|..+++|+.|++++|++
T Consensus       223 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~  302 (452)
T 3zyi_A          223 LEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW  302 (452)
T ss_dssp             EECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCE
T ss_pred             EECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCc
Confidence            99999999988888899999999999999999988887 88899999999999999988888889999999999999998


Q ss_pred             ee
Q 004747          644 SG  645 (732)
Q Consensus       644 ~g  645 (732)
                      ..
T Consensus       303 ~C  304 (452)
T 3zyi_A          303 NC  304 (452)
T ss_dssp             EC
T ss_pred             CC
Confidence            64

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.95  E-value=8.7e-29  Score=258.39  Aligned_cols=266  Identities=18%  Similarity=0.154  Sum_probs=186.2

Q ss_pred             ccEEeCCCCcccCCCcccccCCCCCCEEeccCccCCCccccccCCCCCCCEEEccCCcCccccCccccCCcCcceeeccc
Q 004747          326 LVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNN  405 (732)
Q Consensus       326 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~  405 (732)
                      ++..+++.+.+.......+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..+  +..+++|++|++++
T Consensus        12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~   89 (317)
T 3o53_A           12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNN   89 (317)
T ss_dssp             EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCS
T ss_pred             eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcC
Confidence            3444444444443333333444555555555555555555555555566666666655554332  55555555555555


Q ss_pred             ccccccCcccccCCCCCcEEEcccCceeeeccccCCCCCCCCEEEccCCcccccchhhhhcCCCCCEEEcccCCCccccc
Q 004747          406 NNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLP  485 (732)
Q Consensus       406 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p  485 (732)
                      |.+++..     ..++|++|++++|.+++..+..   +++|++|++++|++++..+..+..+++|++|++++|++.+..+
T Consensus        90 n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~  161 (317)
T 3o53_A           90 NYVQELL-----VGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF  161 (317)
T ss_dssp             SEEEEEE-----ECTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEG
T ss_pred             Ccccccc-----CCCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccH
Confidence            5554322     2368888888888888665443   5778889999998887777788888889999999998887777


Q ss_pred             hhhh-cCCCCCEEEccCCcCcccCCcccccCccccCcCCCCCCCCCCcccCCCceeEEeEEEeecCCchhhhhhcccceE
Q 004747          486 NWLF-SFQAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVG  564 (732)
Q Consensus       486 ~~~~-~~~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~  564 (732)
                      ..+. .+++|++|++++|.+++. |...                                             .+++|+.
T Consensus       162 ~~~~~~l~~L~~L~L~~N~l~~~-~~~~---------------------------------------------~l~~L~~  195 (317)
T 3o53_A          162 AELAASSDTLEHLNLQYNFIYDV-KGQV---------------------------------------------VFAKLKT  195 (317)
T ss_dssp             GGGGGGTTTCCEEECTTSCCCEE-ECCC---------------------------------------------CCTTCCE
T ss_pred             HHHhhccCcCCEEECCCCcCccc-cccc---------------------------------------------ccccCCE
Confidence            6664 688899999999888643 1110                                             1567888


Q ss_pred             EEccCCcccccCCcccccccCCceeecccccceecCCc-ccCccCCcEEeCCCCcCc-ccCCcCCCCCCCCCEEEccc-C
Q 004747          565 MDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLT-GQIPGNISSLQELTLLNLSY-N  641 (732)
Q Consensus       565 LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~-l~~l~~L~~LdLs~N~l~-~~ip~~l~~l~~L~~L~ls~-N  641 (732)
                      |++++|+++ .+|..+..+++|++|+|++|++++ +|. +..+++|+.|++++|.++ +.+|..+..++.|+.+++++ +
T Consensus       196 L~Ls~N~l~-~l~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~  273 (317)
T 3o53_A          196 LDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK  273 (317)
T ss_dssp             EECCSSCCC-EECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             EECCCCcCC-cchhhhcccCcccEEECcCCcccc-hhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCch
Confidence            999999998 466668889999999999999985 455 888899999999999998 77888888888999999884 4


Q ss_pred             cceeeCCC
Q 004747          642 SFSGFVPW  649 (732)
Q Consensus       642 ~l~g~ip~  649 (732)
                      .+.|..|.
T Consensus       274 ~l~~~~~~  281 (317)
T 3o53_A          274 KLTGQNEE  281 (317)
T ss_dssp             HHHSSSSC
T ss_pred             hccCCchh
Confidence            56776553

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.95  E-value=1.4e-26  Score=253.42  Aligned_cols=247  Identities=18%  Similarity=0.210  Sum_probs=169.6

Q ss_pred             ccEEeCCCCcccCCCcccccCCCCCCEEeccCccCCCccccccCCCCCCCEEEccCCcCccccCccccCCcCcceeeccc
Q 004747          326 LVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNN  405 (732)
Q Consensus       326 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~  405 (732)
                      ...++.++..++ .+|..+.  ++++.|+|++|++++..+..|.++++|++|++++|.+++                   
T Consensus        45 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~-------------------  102 (440)
T 3zyj_A           45 FSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRT-------------------  102 (440)
T ss_dssp             SCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCE-------------------
T ss_pred             CCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCc-------------------
Confidence            345555555555 4554433  355555555555555444555555555555555555554                   


Q ss_pred             ccccccCcccccCCCCCcEEEcccCceeeeccccCCCCCCCCEEEccCCcccccchhhhhcCCCCCEEEcccCCCcccc-
Q 004747          406 NNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNL-  484 (732)
Q Consensus       406 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-  484 (732)
                           ..+..|.++++|++|+|++|++++..+..|..+++|++|++++|.++...+..|..+++|++|++++|+..+.+ 
T Consensus       103 -----i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~  177 (440)
T 3zyj_A          103 -----IEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYIS  177 (440)
T ss_dssp             -----ECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEEC
T ss_pred             -----cChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeC
Confidence                 44444555666666666666666444445666666666666666666555556666666666666664433333 


Q ss_pred             chhhhcCCCCCEEEccCCcCcccCCcccccCccccCcCCCCCCCCCCcccCCCceeEEeEEEeecCCchhhhhhcccceE
Q 004747          485 PNWLFSFQAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVG  564 (732)
Q Consensus       485 p~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~  564 (732)
                      +..+..+++|++|++++|+++. +|.  +                                           ..+++|+.
T Consensus       178 ~~~~~~l~~L~~L~L~~n~l~~-~~~--~-------------------------------------------~~l~~L~~  211 (440)
T 3zyj_A          178 EGAFEGLSNLRYLNLAMCNLRE-IPN--L-------------------------------------------TPLIKLDE  211 (440)
T ss_dssp             TTTTTTCSSCCEEECTTSCCSS-CCC--C-------------------------------------------TTCSSCCE
T ss_pred             cchhhcccccCeecCCCCcCcc-ccc--c-------------------------------------------CCCcccCE
Confidence            3356677777777777777652 221  1                                           12677888


Q ss_pred             EEccCCcccccCCcccccccCCceeecccccceecCCc-ccCccCCcEEeCCCCcCcccCCcCCCCCCCCCEEEcccCcc
Q 004747          565 MDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSF  643 (732)
Q Consensus       565 LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~-l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l  643 (732)
                      |||++|++++..|..+.++++|+.|+|++|++++..+. +.++++|+.|||++|++++..+..|..+++|+.|++++|++
T Consensus       212 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~  291 (440)
T 3zyj_A          212 LDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW  291 (440)
T ss_dssp             EECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred             EECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCc
Confidence            99999999988888899999999999999999988787 88899999999999999988888889999999999999998


Q ss_pred             ee
Q 004747          644 SG  645 (732)
Q Consensus       644 ~g  645 (732)
                      ..
T Consensus       292 ~C  293 (440)
T 3zyj_A          292 NC  293 (440)
T ss_dssp             EC
T ss_pred             cC
Confidence            64

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.95  E-value=1.4e-28  Score=256.12  Aligned_cols=256  Identities=21%  Similarity=0.196  Sum_probs=184.7

Q ss_pred             cccCcCCcEEEccCCCCCCCCchhhhhcCCCCCccEEeCCCCccc-CCCccccc-------CCCCCCEEeccCccCCCcc
Q 004747          293 LVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFS-GEIPLKIT-------ELKSLQALFLSNNLLIGEI  364 (732)
Q Consensus       293 l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~L~~L~Ls~n~l~-~~~p~~l~-------~l~~L~~L~Ls~n~l~~~~  364 (732)
                      ++..++|+.+++++|.+  .+|..+..     .|+.|++++|.++ ..+|..+.       .+++|++|++++|.+++.+
T Consensus        39 ~~~~~~L~~l~l~~n~l--~~p~~~~~-----~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~  111 (312)
T 1wwl_A           39 YGGGRSLEYLLKRVDTE--ADLGQFTD-----IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTA  111 (312)
T ss_dssp             EEEEEECTTHHHHCCTT--CCCHHHHH-----HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCC
T ss_pred             EccCCCceeEeeccccc--ccHHHHHH-----HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchh
Confidence            45567888899999998  67776665     4888889888884 44665554       6788888888888888877


Q ss_pred             cccc--CCCCCCCEEEccCCcCccccCccccCCcCcceeecccccccccCcccccCCCCCcEEEcccCceeeeccccCCC
Q 004747          365 PARI--GNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAG  442 (732)
Q Consensus       365 p~~l--~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~  442 (732)
                      |..+  ..+++|++|++++|.+++. |..+..+..                   ..+++|++|++++|++++..|..+..
T Consensus       112 ~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~-------------------~~~~~L~~L~L~~N~l~~~~~~~~~~  171 (312)
T 1wwl_A          112 PPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQ-------------------WLKPGLKVLSIAQAHSLNFSCEQVRV  171 (312)
T ss_dssp             CCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHT-------------------TCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred             HHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHH-------------------hhcCCCcEEEeeCCCCccchHHHhcc
Confidence            7765  7788888888888888765 655443300                   01256777777777777666666777


Q ss_pred             CCCCCEEEccCCccccc--chhhh--hcCCCCCEEEcccCCCcc--ccc-hhhhcCCCCCEEEccCCcCcccCCcccccC
Q 004747          443 LKSLEIVDFSSNNLSGS--LNDAI--TKWTNLKYFSIARNKLSG--NLP-NWLFSFQAIQMMDFSTNKFMGFIPDGNFNF  515 (732)
Q Consensus       443 l~~L~~L~Ls~N~l~~~--~~~~~--~~l~~L~~L~L~~N~l~~--~~p-~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~  515 (732)
                      +++|++|++++|++.+.  .+..+  ..+++|++|++++|++++  .++ ..+..+++|++|++++|++++..|...+..
T Consensus       172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~  251 (312)
T 1wwl_A          172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDW  251 (312)
T ss_dssp             CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCC
T ss_pred             CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhh
Confidence            77777777777776654  23333  667777777777777762  222 334567788888888888876654332211


Q ss_pred             ccccCcCCCCCCCCCCcccCCCceeEEeEEEeecCCchhhhhhcccceEEEccCCcccccCCcccccccCCceeeccccc
Q 004747          516 SLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNF  595 (732)
Q Consensus       516 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~  595 (732)
                                                                 +++|++|+|++|+++ .+|..+.  ++|++|||++|+
T Consensus       252 -------------------------------------------l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~  285 (312)
T 1wwl_A          252 -------------------------------------------PSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNR  285 (312)
T ss_dssp             -------------------------------------------CTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSC
T ss_pred             -------------------------------------------cCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCC
Confidence                                                       567888999999988 7888776  889999999999


Q ss_pred             ceecCCcccCccCCcEEeCCCCcCccc
Q 004747          596 LDGQVPGLYRLRSLRALDLSHNSLTGQ  622 (732)
Q Consensus       596 l~~~ip~l~~l~~L~~LdLs~N~l~~~  622 (732)
                      +++. |.+..+++|++|+|++|.+++.
T Consensus       286 l~~~-p~~~~l~~L~~L~L~~N~l~~~  311 (312)
T 1wwl_A          286 LDRN-PSPDELPQVGNLSLKGNPFLDS  311 (312)
T ss_dssp             CCSC-CCTTTSCEEEEEECTTCTTTCC
T ss_pred             CCCC-hhHhhCCCCCEEeccCCCCCCC
Confidence            9865 6688899999999999998863

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.95  E-value=2.4e-27  Score=243.77  Aligned_cols=175  Identities=18%  Similarity=0.210  Sum_probs=82.8

Q ss_pred             EEeCCCCcccCCCcccccCCCCCCEEeccCccCCCccccccCCCCCCCEEEccCCcCccccCccccCCcCcceeeccccc
Q 004747          328 LLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNN  407 (732)
Q Consensus       328 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~  407 (732)
                      .++.+++.++ .+|..+  .++|++|++++|.+++..+..+..+++|++|++++|.+++..|..+..+++|++|++++|.
T Consensus        15 ~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~   91 (285)
T 1ozn_A           15 TTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA   91 (285)
T ss_dssp             EEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred             EEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC
Confidence            4455555554 334322  2355555555555554444445555555555555555554444444444444444444443


Q ss_pred             -ccccCcccccCCCCCcEEEcccCceeeeccccCCCCCCCCEEEccCCcccccchhhhhcCCCCCEEEcccCCCccccch
Q 004747          408 -LSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPN  486 (732)
Q Consensus       408 -l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~  486 (732)
                       +....+..+..+++|++|++++|.+++..|..+.++++|++|++++|++++..+..+..+++|++|++++|++++..+.
T Consensus        92 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  171 (285)
T 1ozn_A           92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPER  171 (285)
T ss_dssp             TCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTT
T ss_pred             CccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHH
Confidence             3333334444455555555555555544444445555555555555555544444444455555555555544433333


Q ss_pred             hhhcCCCCCEEEccCCcCc
Q 004747          487 WLFSFQAIQMMDFSTNKFM  505 (732)
Q Consensus       487 ~~~~~~~L~~L~ls~N~l~  505 (732)
                      .+..+++|+.|++++|.++
T Consensus       172 ~~~~l~~L~~L~l~~n~l~  190 (285)
T 1ozn_A          172 AFRGLHSLDRLLLHQNRVA  190 (285)
T ss_dssp             TTTTCTTCCEEECCSSCCC
T ss_pred             HhcCccccCEEECCCCccc
Confidence            3444444444444444443

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.95  E-value=7.3e-27  Score=244.62  Aligned_cols=225  Identities=21%  Similarity=0.272  Sum_probs=156.7

Q ss_pred             CCCCEEEeccCCCCCcCccccccCcCCcEEEccCCCCCCCCchhhhhcCCCCCccEEeCCCCcccCCCcccccCCCCCCE
Q 004747          273 QALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQA  352 (732)
Q Consensus       273 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~  352 (732)
                      +++++|++++|.++ .+|..+..+++|++|++++|.++ .+|..+..+.   +|++|++++|.++ .+|..+..+++|++
T Consensus        81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~---~L~~L~Ls~n~l~-~lp~~l~~l~~L~~  154 (328)
T 4fcg_A           81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFA---GLETLTLARNPLR-ALPASIASLNRLRE  154 (328)
T ss_dssp             TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGT---TCSEEEEESCCCC-CCCGGGGGCTTCCE
T ss_pred             cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccC---CCCEEECCCCccc-cCcHHHhcCcCCCE
Confidence            44455555555544 34444444555555555555554 4444444444   4555555555554 44555555555555


Q ss_pred             EeccCccCCCccccccC---------CCCCCCEEEccCCcCccccCccccCCcCcceeecccccccccCcccccCCCCCc
Q 004747          353 LFLSNNLLIGEIPARIG---------NLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLK  423 (732)
Q Consensus       353 L~Ls~n~l~~~~p~~l~---------~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~  423 (732)
                      |++++|++.+.+|..+.         ++++|++|++++|.++ .+|..+..+++|+.|++++|.+++ +|..+..+++|+
T Consensus       155 L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~  232 (328)
T 4fcg_A          155 LSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLE  232 (328)
T ss_dssp             EEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCC
T ss_pred             EECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCC
Confidence            55555555555554443         3777777777777777 667777777777777777777775 444578888899


Q ss_pred             EEEcccCceeeeccccCCCCCCCCEEEccCCcccccchhhhhcCCCCCEEEcccCCCccccchhhhcCCCCCEEEccCCc
Q 004747          424 ILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNK  503 (732)
Q Consensus       424 ~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~ls~N~  503 (732)
                      +|++++|.+.+.+|..+.++++|++|++++|.+.+.+|.++..+++|++|++++|++.+.+|..+..+++++.+++..+.
T Consensus       233 ~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~  312 (328)
T 4fcg_A          233 ELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHL  312 (328)
T ss_dssp             EEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGG
T ss_pred             EEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHH
Confidence            99999988888888888889999999999988888888888889999999999999988999999999999999888766


Q ss_pred             Cc
Q 004747          504 FM  505 (732)
Q Consensus       504 l~  505 (732)
                      +.
T Consensus       313 ~~  314 (328)
T 4fcg_A          313 QA  314 (328)
T ss_dssp             SC
T ss_pred             HH
Confidence            53

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.94  E-value=1.2e-26  Score=238.41  Aligned_cols=225  Identities=22%  Similarity=0.195  Sum_probs=121.3

Q ss_pred             CeeeCCCCccccccchhhhccCCCCEEEeccCCCCCcCccccccCcCCcEEEccCCCCCCCCchhhhhcCCCCCccEEeC
Q 004747          252 TVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDL  331 (732)
Q Consensus       252 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~L~~L~L  331 (732)
                      ++++.+++.++ .+|..+  .++|++|++++|.+++..+..+..+++|++|++++|.+++..|..+..++   +|++|++
T Consensus        14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~---~L~~L~l   87 (285)
T 1ozn_A           14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLA---LLEQLDL   87 (285)
T ss_dssp             CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT---TCCEEEC
T ss_pred             eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCcc---CCCEEeC
Confidence            44555555554 233322  34555666666555544444455555555555555555543344443333   4455555


Q ss_pred             CCCc-ccCCCcccccCCCCCCEEeccCccCCCccccccCCCCCCCEEEccCCcCccccCccccCCcCcceeecccccccc
Q 004747          332 SHNR-FSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSG  410 (732)
Q Consensus       332 s~n~-l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~  410 (732)
                      ++|. +++..|..+..+++|++|++++|.+++..|..+.++++|++|++++|.                        +.+
T Consensus        88 ~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~------------------------l~~  143 (285)
T 1ozn_A           88 SDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA------------------------LQA  143 (285)
T ss_dssp             CSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC------------------------CCC
T ss_pred             CCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCc------------------------ccc
Confidence            5544 433334444444444444444444444444444444444444444444                        444


Q ss_pred             cCcccccCCCCCcEEEcccCceeeeccccCCCCCCCCEEEccCCcccccchhhhhcCCCCCEEEcccCCCccccchhhhc
Q 004747          411 EIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFS  490 (732)
Q Consensus       411 ~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~  490 (732)
                      ..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+++..|.++..+++|++|++++|++++..+..+..
T Consensus       144 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  223 (285)
T 1ozn_A          144 LPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAP  223 (285)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTT
T ss_pred             cCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHccc
Confidence            44444555666666666666666554445666666666666666666655666666666666666666666555555666


Q ss_pred             CCCCCEEEccCCcCcc
Q 004747          491 FQAIQMMDFSTNKFMG  506 (732)
Q Consensus       491 ~~~L~~L~ls~N~l~~  506 (732)
                      +++|+.|++++|++.+
T Consensus       224 l~~L~~L~l~~N~~~c  239 (285)
T 1ozn_A          224 LRALQYLRLNDNPWVC  239 (285)
T ss_dssp             CTTCCEEECCSSCEEC
T ss_pred             CcccCEEeccCCCccC
Confidence            6666666666666653

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.94  E-value=5.1e-30  Score=292.43  Aligned_cols=464  Identities=13%  Similarity=0.078  Sum_probs=238.9

Q ss_pred             CCCCccceeecCCCCcEEEEEcCCCCCcccccccccCCCCCCEEECCCCCCCCc---cc------------ccccCCCCC
Q 004747           68 NCTNWTGVACNFQTGHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGR---IS------------TCFGGLSGL  132 (732)
Q Consensus        68 ~~c~w~gv~c~~~~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~---~~------------~~~~~l~~L  132 (732)
                      -|++|.++...    ..+.+++..+... .....+..+++|++|+++++.....   .|            .....+++|
T Consensus        33 vck~W~~~~~~----~~~~l~~~~~~~~-~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L  107 (594)
T 2p1m_B           33 VCKSWYEIERW----CRRKVFIGNCYAV-SPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWL  107 (594)
T ss_dssp             SCHHHHHHHHH----HCCEEEESSTTSS-CHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTC
T ss_pred             HHHHHHHhhhh----hceEEeecccccc-CHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCC
Confidence            46678877321    2234555543321 1123456778899999988753211   11            112356677


Q ss_pred             CEEECCCCCCCCCCCcccc-CCCCCCEEeCCCCCCCCCc-CCchhhhcccCCcEEEeeCcccccccCcccC----CCCCC
Q 004747          133 KTLDLSYNKFVGVVPDAIM-KLRNLRELILKGNPELGGV-FPGWVGNFSMNLEKLDFSFNSFCGEIPESLY----YLKSL  206 (732)
Q Consensus       133 ~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~Ls~n~~~~~~-~p~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~----~l~~L  206 (732)
                      ++|+|++|.+++..+..+. .+++|++|+|++|..++.. ++.....+ ++|++|++++|.+++..+..+.    .+++|
T Consensus       108 ~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~-~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L  186 (594)
T 2p1m_B          108 EEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATC-RNLKELDLRESDVDDVSGHWLSHFPDTYTSL  186 (594)
T ss_dssp             CEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHC-TTCCEEECTTCEEECCCGGGGGGSCTTCCCC
T ss_pred             CeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhC-CCCCEEeCcCCccCCcchHHHHHHhhcCCcC
Confidence            7777777776655555554 5667777777666322211 22222334 5666666666665543332222    34455


Q ss_pred             CEEEeecccCCCccccccccccEEECCCCcCcc-ccCchhhcccccCeeeCCCCccccccchhhhccCCCCEEEeccCC-
Q 004747          207 KHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSG-TLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNH-  284 (732)
Q Consensus       207 ~~L~Ls~n~l~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~-  284 (732)
                      ++|++++|. ..                  ++. .++.....+++|++|++++|...+.++..+..+++|++|+++.+. 
T Consensus       187 ~~L~l~~~~-~~------------------~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~  247 (594)
T 2p1m_B          187 VSLNISCLA-SE------------------VSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTA  247 (594)
T ss_dssp             CEEECTTCC-SC------------------CCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCC
T ss_pred             cEEEecccC-Cc------------------CCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccC
Confidence            555555543 00                  111 112223345667777777663222356666667777777654442 


Q ss_pred             ------CCCcCccccccCcCCcEE-EccCCCCCCCCchhhhhcCCCCCccEEeCCCCcccCCC-cccccCCCCCCEEecc
Q 004747          285 ------LNYEISPRLVFFEKLLLL-DLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEI-PLKITELKSLQALFLS  356 (732)
Q Consensus       285 ------l~~~~~~~l~~l~~L~~L-~Ls~n~l~~~~p~~~~~l~~~~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~Ls  356 (732)
                            +.+ ++..+.++++|+.+ .+..... +.++..+..++   +|+.|++++|.+++.. +..+..+++|++|+++
T Consensus       248 ~~~~~~~~~-l~~~l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~---~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~  322 (594)
T 2p1m_B          248 EVRPDVYSG-LSVALSGCKELRCLSGFWDAVP-AYLPAVYSVCS---RLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVL  322 (594)
T ss_dssp             CCCHHHHHH-HHHHHHTCTTCCEEECCBTCCG-GGGGGGHHHHT---TCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEE
T ss_pred             ccchhhHHH-HHHHHhcCCCcccccCCcccch-hhHHHHHHhhC---CCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCc
Confidence                  111 22345556666666 2322211 12333333333   5666666666654321 2223455666666666


Q ss_pred             CccCCCc-cccccCCCCCCCEEEccCCcCccccCccccCCcCcceeecccccccccCcccc-cCCCCCcEEEcccCceee
Q 004747          357 NNLLIGE-IPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPEL-DALDSLKILDISNNQISG  434 (732)
Q Consensus       357 ~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~  434 (732)
                      +| +.+. ++.....+++|++|+++++.-.|               ....+.+++.....+ ..+++|+.|+++.|.+++
T Consensus       323 ~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g---------------~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~  386 (594)
T 2p1m_B          323 DY-IEDAGLEVLASTCKDLRELRVFPSEPFV---------------MEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTN  386 (594)
T ss_dssp             GG-GHHHHHHHHHHHCTTCCEEEEECSCTTC---------------SSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCH
T ss_pred             Cc-cCHHHHHHHHHhCCCCCEEEEecCcccc---------------cccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCH
Confidence            55 2211 22222335566666663321000               001122222211112 235666666666666655


Q ss_pred             eccccCC-CCCCCCEEEcc--C----Ccccc-----cchhhhhcCCCCCEEEcccCCCccccchhhhc-CCCCCEEEccC
Q 004747          435 EIPLTLA-GLKSLEIVDFS--S----NNLSG-----SLNDAITKWTNLKYFSIARNKLSGNLPNWLFS-FQAIQMMDFST  501 (732)
Q Consensus       435 ~~p~~~~-~l~~L~~L~Ls--~----N~l~~-----~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~-~~~L~~L~ls~  501 (732)
                      ..+..+. .+++|+.|+++  +    +.+++     .++..+..+++|+.|++++ .+++..+..+.. +++|+.|++++
T Consensus       387 ~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~  465 (594)
T 2p1m_B          387 AALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAF  465 (594)
T ss_dssp             HHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEES
T ss_pred             HHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccC
Confidence            4443333 46667777776  3    44442     1223355677777777766 555444444544 77778888877


Q ss_pred             CcCcccCCcccccCccccCcCCCCCCCCCCcccCCCceeEEeEEEeecCCchhhhhhcccceEEEccCCcccccCCc-cc
Q 004747          502 NKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGTIPK-GL  580 (732)
Q Consensus       502 N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~-~l  580 (732)
                      |.+++..+..+                                           ...+++|+.|++++|.+++..+. .+
T Consensus       466 ~~i~~~~~~~l-------------------------------------------~~~~~~L~~L~L~~n~~~~~~~~~~~  502 (594)
T 2p1m_B          466 AGDSDLGMHHV-------------------------------------------LSGCDSLRKLEIRDCPFGDKALLANA  502 (594)
T ss_dssp             CCSSHHHHHHH-------------------------------------------HHHCTTCCEEEEESCSCCHHHHHHTG
T ss_pred             CCCcHHHHHHH-------------------------------------------HhcCCCcCEEECcCCCCcHHHHHHHH
Confidence            77653222111                                           12366777888888887654443 33


Q ss_pred             ccccCCceeecccccceecCCc-c-cCccCCcEEeCCCCcCcc
Q 004747          581 FQLQGLEYLNLSFNFLDGQVPG-L-YRLRSLRALDLSHNSLTG  621 (732)
Q Consensus       581 ~~l~~L~~L~Ls~N~l~~~ip~-l-~~l~~L~~LdLs~N~l~~  621 (732)
                      ..+++|++|++++|+++..... + ..++.|+...+..+.-..
T Consensus       503 ~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~~~~  545 (594)
T 2p1m_B          503 SKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGAPD  545 (594)
T ss_dssp             GGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSSCGG
T ss_pred             HhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCCccc
Confidence            4578888888888888543222 3 456777777777665443

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.94  E-value=2.4e-26  Score=252.40  Aligned_cols=225  Identities=23%  Similarity=0.189  Sum_probs=173.4

Q ss_pred             CCCCEEECCCCCCCCcccccccCCCCCCEEECCCCCCCCCCCccccCCCCCCEEeCCCCCCCCCcCCchhhhcccCCcEE
Q 004747          106 SFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKL  185 (732)
Q Consensus       106 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~~L~~L  185 (732)
                      +++++|+|++|++++..+..|.++++|++|+|++|.+++..|..|.++++|++|+|++| .+.+..+..+..+ ++|++|
T Consensus        75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l-~~L~~L  152 (452)
T 3zyi_A           75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN-WLTVIPSGAFEYL-SKLREL  152 (452)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSBCCTTTSSSC-TTCCEE
T ss_pred             CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC-cCCccChhhhccc-CCCCEE
Confidence            57788888888888777777888888888888888888777777888888888888888 4555555556666 788888


Q ss_pred             EeeCcccccccCcccCCCCCCCEEEeecccCCCcc-cc---ccccccEEECCCCcCccccCchhhcccccCeeeCCCCcc
Q 004747          186 DFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNV-HD---FYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSV  261 (732)
Q Consensus       186 ~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~-~~---~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l  261 (732)
                      ++++|.+++..+..|.++++|++|++++|+..+.+ +.   .+.+|++|++++|.+++. | .+..+++|++|++++|.+
T Consensus       153 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l  230 (452)
T 3zyi_A          153 WLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHF  230 (452)
T ss_dssp             ECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCC
T ss_pred             ECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c-cccccccccEEECcCCcC
Confidence            88888887666667788888888888874433333 22   234588888888888753 3 467788888889988888


Q ss_pred             ccccchhhhccCCCCEEEeccCCCCCcCccccccCcCCcEEEccCCCCCCCCchhhhhcCCCCCccEEeCCCCccc
Q 004747          262 VGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFS  337 (732)
Q Consensus       262 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~L~~L~Ls~n~l~  337 (732)
                      ++..|..|.++++|++|++++|++++..+..+..+++|+.|+|++|++++..+..+..+.   +|+.|++++|.+.
T Consensus       231 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~---~L~~L~L~~Np~~  303 (452)
T 3zyi_A          231 PEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLR---YLVELHLHHNPWN  303 (452)
T ss_dssp             SEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCT---TCCEEECCSSCEE
T ss_pred             cccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhcccc---CCCEEEccCCCcC
Confidence            888888888888899999998888888788888888899999999888865555555555   7888999988876

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.94  E-value=4.4e-28  Score=253.07  Aligned_cols=254  Identities=21%  Similarity=0.163  Sum_probs=143.5

Q ss_pred             EECCCCCCCCcccccccCCCCCCEEECCCCCCCCCCCccccCCCCCCEEeCCCCCCCCCcCCchhhhcccCCcEEEeeCc
Q 004747          111 LVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFN  190 (732)
Q Consensus       111 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~~L~~L~Ls~n  190 (732)
                      .+++.+.+.......+..+++|++|+|++|.+++..|..|.++++|++|+|++| .+.+..+  +..+ ++|++|++++|
T Consensus        15 ~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~--~~~l-~~L~~L~Ls~n   90 (317)
T 3o53_A           15 EKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN-VLYETLD--LESL-STLRTLDLNNN   90 (317)
T ss_dssp             ESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTS-CCEEEEE--ETTC-TTCCEEECCSS
T ss_pred             eeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCC-cCCcchh--hhhc-CCCCEEECcCC
Confidence            344444443333333444555666666666655555555555556666666555 2222222  4444 56666666666


Q ss_pred             ccccccCcccCCCCCCCEEEeecccCCCccccccccccEEECCCCcCccccCchhhcccccCeeeCCCCccccccchhhh
Q 004747          191 SFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIA  270 (732)
Q Consensus       191 ~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~  270 (732)
                      .+++..     ..++|++|++++|.+++..+..+.+|++|++++|.+++..+..+..+++|++|++++|.+++..+..+.
T Consensus        91 ~l~~l~-----~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~  165 (317)
T 3o53_A           91 YVQELL-----VGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA  165 (317)
T ss_dssp             EEEEEE-----ECTTCCEEECCSSCCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGG
T ss_pred             cccccc-----CCCCcCEEECCCCccCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHh
Confidence            665322     236788888888877776666666777777777777766666677777777777777777766555553


Q ss_pred             -ccCCCCEEEeccCCCCCcCccccccCcCCcEEEccCCCCCCCCchhhhhcCCCCCccEEeCCCCcccCCCcccccCCCC
Q 004747          271 -SLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKS  349 (732)
Q Consensus       271 -~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~  349 (732)
                       .+++|++|++++|.+++.  +....+++|++|++++|.+++                            +|..+..+++
T Consensus       166 ~~l~~L~~L~L~~N~l~~~--~~~~~l~~L~~L~Ls~N~l~~----------------------------l~~~~~~l~~  215 (317)
T 3o53_A          166 ASSDTLEHLNLQYNFIYDV--KGQVVFAKLKTLDLSSNKLAF----------------------------MGPEFQSAAG  215 (317)
T ss_dssp             GGTTTCCEEECTTSCCCEE--ECCCCCTTCCEEECCSSCCCE----------------------------ECGGGGGGTT
T ss_pred             hccCcCCEEECCCCcCccc--ccccccccCCEEECCCCcCCc----------------------------chhhhcccCc
Confidence             567777777777766543  122235555555555555542                            2223444444


Q ss_pred             CCEEeccCccCCCccccccCCCCCCCEEEccCCcCc-cccCccccCCcCcceeecc
Q 004747          350 LQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLS-GSIPLNIVGCFQLLALIVN  404 (732)
Q Consensus       350 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~-~~~p~~~~~~~~L~~L~l~  404 (732)
                      |++|++++|.++ .+|..+..+++|+.|++++|.+. +.+|..+..+++|+.+++.
T Consensus       216 L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~  270 (317)
T 3o53_A          216 VTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ  270 (317)
T ss_dssp             CSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHH
T ss_pred             ccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECC
Confidence            555555555444 33444445555555555555554 4444445555555555555

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.94  E-value=2.7e-26  Score=258.47  Aligned_cols=287  Identities=24%  Similarity=0.280  Sum_probs=188.3

Q ss_pred             CCCC-CCCCCCCccceee------cCCCCcEEEEEcCCCCCcccccccccCCCCCCEEECCCCCCCCcccccccCCCCCC
Q 004747           61 LSSW-VGSNCTNWTGVAC------NFQTGHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLK  133 (732)
Q Consensus        61 l~~w-~~~~~c~w~gv~c------~~~~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  133 (732)
                      .++| .+.+||.|.|..|      ......++.|++++++++ .+|..+.  ++|++|++++|.++ .+|.   .+++|+
T Consensus        12 w~~W~~~~~~~~~~~r~~~~~~~~~c~~~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~   84 (622)
T 3g06_A           12 WSAWRRAAPAEESRGRAAVVQKMRACLNNGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELR   84 (622)
T ss_dssp             HHHHHHTCCGGGHHHHHHHHHHHHHHHHHCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCC
T ss_pred             HHHHHhcCCcchhccccccCcccccccCCCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCC
Confidence            3457 5678999976422      112235888999999987 6676665  78999999999988 4555   578899


Q ss_pred             EEECCCCCCCCCCCccccCCCCCCEEeCCCCCCCCCcCCchhhhcccCCcEEEeeCcccccccCcccCCCCCCCEEEeec
Q 004747          134 TLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEK  213 (732)
Q Consensus       134 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~  213 (732)
                      +|+|++|.+++ +|.   .+++|++|++++|+ +.+ +|.   .+ ++|++|++++|.+++ +|..   +++|++|++++
T Consensus        85 ~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~-l~~-l~~---~l-~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~  150 (622)
T 3g06_A           85 TLEVSGNQLTS-LPV---LPPGLLELSIFSNP-LTH-LPA---LP-SGLCKLWIFGNQLTS-LPVL---PPGLQELSVSD  150 (622)
T ss_dssp             EEEECSCCCSC-CCC---CCTTCCEEEECSCC-CCC-CCC---CC-TTCCEEECCSSCCSC-CCCC---CTTCCEEECCS
T ss_pred             EEEcCCCcCCc-CCC---CCCCCCEEECcCCc-CCC-CCC---CC-CCcCEEECCCCCCCc-CCCC---CCCCCEEECcC
Confidence            99999999884 454   67888999998884 333 343   22 688888888888874 5543   47888888888


Q ss_pred             ccCCCccccccccccEEECCCCcCccccCchhhcccccCeeeCCCCccccccchhhhccCCCCEEEeccCCCCCcCcccc
Q 004747          214 NNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRL  293 (732)
Q Consensus       214 n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l  293 (732)
                      |.+++. +..+.+|+.|++++|.+++ +|   ..+++|+.|++++|.+++ +|.   .+++|+.|++++|.++. +|.  
T Consensus       151 N~l~~l-~~~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l~~--  218 (622)
T 3g06_A          151 NQLASL-PALPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLTS-LPA--  218 (622)
T ss_dssp             SCCSCC-CCCCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSS-CCC--
T ss_pred             CcCCCc-CCccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCcccc-cCC--
Confidence            888753 3445667777777777764 34   345667777777777664 332   23566777777776663 332  


Q ss_pred             ccCcCCcEEEccCCCCCCCCchhhhhcCCCCCccEEeCCCCcccCCCcccccCCCCCCEEeccCccCCCccccccCCCCC
Q 004747          294 VFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTY  373 (732)
Q Consensus       294 ~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~  373 (732)
                       .+++|+.|++++|.+++ +|.   .   .++|+.|++++|.++ .+|.   .+++|+.|++++|.++ .+|..+.++++
T Consensus       219 -~~~~L~~L~Ls~N~L~~-lp~---~---l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~  285 (622)
T 3g06_A          219 -LPSGLKELIVSGNRLTS-LPV---L---PSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSS  285 (622)
T ss_dssp             -CCTTCCEEECCSSCCSC-CCC---C---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCT
T ss_pred             -CCCCCCEEEccCCccCc-CCC---C---CCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccc
Confidence             23566666666666663 331   1   125666666666666 3443   3456666666666666 55556666666


Q ss_pred             CCEEEccCCcCccccCcccc
Q 004747          374 LQVIDLSHNMLSGSIPLNIV  393 (732)
Q Consensus       374 L~~L~Ls~n~l~~~~p~~~~  393 (732)
                      |+.|++++|.+++..|..+.
T Consensus       286 L~~L~L~~N~l~~~~~~~l~  305 (622)
T 3g06_A          286 ETTVNLEGNPLSERTLQALR  305 (622)
T ss_dssp             TCEEECCSCCCCHHHHHHHH
T ss_pred             cCEEEecCCCCCCcCHHHHH
Confidence            66666666666655554443

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.94  E-value=7.8e-29  Score=282.65  Aligned_cols=253  Identities=12%  Similarity=0.076  Sum_probs=123.1

Q ss_pred             cccCCCCCCEE-eccCccCCCccccccCCCCCCCEEEccCCcCccccCc-cccCCcCcceeeccccccccc-CcccccCC
Q 004747          343 KITELKSLQAL-FLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPL-NIVGCFQLLALIVNNNNLSGE-IQPELDAL  419 (732)
Q Consensus       343 ~l~~l~~L~~L-~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~-~~~~~~~L~~L~l~~n~l~~~-~~~~~~~l  419 (732)
                      .+.++++|+.| .+.+... +.++..+..+++|+.|++++|.+++.... .+..+++|+.|++.+| +... ++.....+
T Consensus       260 ~l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~  337 (594)
T 2p1m_B          260 ALSGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTC  337 (594)
T ss_dssp             HHHTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHC
T ss_pred             HHhcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhC
Confidence            44555555555 2322211 23333333455566666655554432211 1234455555555554 2211 11122345


Q ss_pred             CCCcEEEccc---------CceeeeccccC-CCCCCCCEEEccCCcccccchhhhh-cCCCCCEEEcc--c----CCCcc
Q 004747          420 DSLKILDISN---------NQISGEIPLTL-AGLKSLEIVDFSSNNLSGSLNDAIT-KWTNLKYFSIA--R----NKLSG  482 (732)
Q Consensus       420 ~~L~~L~L~~---------n~l~~~~p~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~--~----N~l~~  482 (732)
                      ++|++|++++         +.+++.....+ .++++|++|+++.|.+++.....+. .+++|+.|+++  +    +.+++
T Consensus       338 ~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~  417 (594)
T 2p1m_B          338 KDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTL  417 (594)
T ss_dssp             TTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTC
T ss_pred             CCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccC
Confidence            6666666632         33433222222 2356677776666666655444443 46677777776  2    33431


Q ss_pred             -----ccchhhhcCCCCCEEEccCCcCcccCCcccccCccccCcCCCCCCCCCCcccCCCceeEEeEEEeecCCchhhhh
Q 004747          483 -----NLPNWLFSFQAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNY  557 (732)
Q Consensus       483 -----~~p~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  557 (732)
                           .++..+..+++|+.|++++ .+++..+..+                                           ..
T Consensus       418 ~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l-------------------------------------------~~  453 (594)
T 2p1m_B          418 EPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYI-------------------------------------------GT  453 (594)
T ss_dssp             CCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHH-------------------------------------------HH
T ss_pred             CchhhHHHHHHhhCCCccEEeecC-cccHHHHHHH-------------------------------------------HH
Confidence                 1222345566666666654 3332111110                                           01


Q ss_pred             hcccceEEEccCCcccccCCccc-ccccCCceeecccccceecCCc--ccCccCCcEEeCCCCcCcccCCcCC-CCCCCC
Q 004747          558 QLFSAVGMDLSDNLLHGTIPKGL-FQLQGLEYLNLSFNFLDGQVPG--LYRLRSLRALDLSHNSLTGQIPGNI-SSLQEL  633 (732)
Q Consensus       558 ~l~~L~~LdLs~N~l~g~ip~~l-~~l~~L~~L~Ls~N~l~~~ip~--l~~l~~L~~LdLs~N~l~~~ip~~l-~~l~~L  633 (732)
                      .+++|+.|++++|.+++..+..+ ..+++|++|+|++|.+++....  +..+++|++|++++|.++......+ ..++.|
T Consensus       454 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l  533 (594)
T 2p1m_B          454 YAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKL  533 (594)
T ss_dssp             HCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTE
T ss_pred             hchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCC
Confidence            14556667777776665544444 4466677777777766543332  3346667777777776654333333 334555


Q ss_pred             CEEEcccC
Q 004747          634 TLLNLSYN  641 (732)
Q Consensus       634 ~~L~ls~N  641 (732)
                      +...+..+
T Consensus       534 ~i~~~~~~  541 (594)
T 2p1m_B          534 NVEVIDER  541 (594)
T ss_dssp             EEEEECSS
T ss_pred             EEEEecCC
Confidence            55444443

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.94  E-value=2.4e-25  Score=243.59  Aligned_cols=247  Identities=23%  Similarity=0.184  Sum_probs=147.9

Q ss_pred             CCEEEeecccCCCccccccccccEEECCCCcCccccCchhhcccccCeeeCCCCccccccchhhhccCCCCEEEeccCCC
Q 004747          206 LKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHL  285 (732)
Q Consensus       206 L~~L~Ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l  285 (732)
                      .+.++.+++.++..+.....+++.|+|++|++++..+..+..+++|++|++++|.+.+..+..|.++++|++|++++|++
T Consensus        45 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l  124 (440)
T 3zyj_A           45 FSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRL  124 (440)
T ss_dssp             SCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCC
T ss_pred             CCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcC
Confidence            34555555555544433344466666666666666666677777777777777777766666777777777777777777


Q ss_pred             CCcCccccccCcCCcEEEccCCCCCCCCchhhhhcCCCCCccEEeCCCCcccCCCc-ccccCCCCCCEEeccCccCCCcc
Q 004747          286 NYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIP-LKITELKSLQALFLSNNLLIGEI  364 (732)
Q Consensus       286 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~Ls~n~l~~~~  364 (732)
                      +...+..+..+++|++|++++|.++...+..+..++   +|++|++++|+..+.++ ..+..+++|++|++++|.++ .+
T Consensus       125 ~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~---~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~  200 (440)
T 3zyj_A          125 TTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIP---SLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EI  200 (440)
T ss_dssp             SSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCT---TCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SC
T ss_pred             CeeCHhHhhccccCceeeCCCCcccccCHHHhhhCc---ccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-cc
Confidence            755555666667777777776666643333444433   56666666533222222 24555555555555555555 23


Q ss_pred             ccccCCCCCCCEEEccCCcCccccCccccCCcCcceeecccccccccCcccccCCCCCcEEEcccCceeeeccccCCCCC
Q 004747          365 PARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLK  444 (732)
Q Consensus       365 p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~  444 (732)
                      | .+..+++|++|++++|.++                        +..+..+..+++|+.|++++|++++..+..|.+++
T Consensus       201 ~-~~~~l~~L~~L~Ls~N~l~------------------------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  255 (440)
T 3zyj_A          201 P-NLTPLIKLDELDLSGNHLS------------------------AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQ  255 (440)
T ss_dssp             C-CCTTCSSCCEEECTTSCCC------------------------EECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCT
T ss_pred             c-ccCCCcccCEEECCCCccC------------------------ccChhhhccCccCCEEECCCCceeEEChhhhcCCC
Confidence            3 2444555555555555554                        44444555566666666666666666666666666


Q ss_pred             CCCEEEccCCcccccchhhhhcCCCCCEEEcccCCCc
Q 004747          445 SLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLS  481 (732)
Q Consensus       445 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  481 (732)
                      +|++|+|++|++++..+..+..+++|+.|+|++|++.
T Consensus       256 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~  292 (440)
T 3zyj_A          256 SLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN  292 (440)
T ss_dssp             TCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred             CCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence            6666666666666555555666666666666666664

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.94  E-value=5.9e-27  Score=258.74  Aligned_cols=234  Identities=20%  Similarity=0.164  Sum_probs=134.9

Q ss_pred             CCCEEeccCccCCCccccccCCCCCCCEEEccCCcCccccCccccCCcCcceeecccccccccCcccccCCCCCcEEEcc
Q 004747          349 SLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDIS  428 (732)
Q Consensus       349 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~  428 (732)
                      +|++|+|++|.+++..|..|..+++|++|++++|.+++..|  +..+++|+.|++++|.+++..     ..++|+.|+++
T Consensus        35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L~L~  107 (487)
T 3oja_A           35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLHAA  107 (487)
T ss_dssp             GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEEECC
T ss_pred             CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEEECc
Confidence            34444444444444333444444444444444444433222  333333333333333333221     12567777777


Q ss_pred             cCceeeeccccCCCCCCCCEEEccCCcccccchhhhhcCCCCCEEEcccCCCccccchhhh-cCCCCCEEEccCCcCccc
Q 004747          429 NNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLF-SFQAIQMMDFSTNKFMGF  507 (732)
Q Consensus       429 ~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~-~~~~L~~L~ls~N~l~~~  507 (732)
                      +|.+++..+.   .+++|+.|++++|.+++..|..++.+++|++|++++|.+++..|..+. .+++|+.|++++|.+++.
T Consensus       108 ~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~  184 (487)
T 3oja_A          108 NNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV  184 (487)
T ss_dssp             SSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred             CCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc
Confidence            7777655443   346677777777777766666677777777777777777766666664 567777777777776643


Q ss_pred             CCcccccCccccCcCCCCCCCCCCcccCCCceeEEeEEEeecCCchhhhhhcccceEEEccCCcccccCCcccccccCCc
Q 004747          508 IPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGTIPKGLFQLQGLE  587 (732)
Q Consensus       508 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~  587 (732)
                      .+..                                              .+++|+.|||++|.+++ +|..+..+++|+
T Consensus       185 ~~~~----------------------------------------------~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~  217 (487)
T 3oja_A          185 KGQV----------------------------------------------VFAKLKTLDLSSNKLAF-MGPEFQSAAGVT  217 (487)
T ss_dssp             ECCC----------------------------------------------CCTTCCEEECCSSCCCE-ECGGGGGGTTCS
T ss_pred             cccc----------------------------------------------cCCCCCEEECCCCCCCC-CCHhHcCCCCcc
Confidence            2111                                              14566677777777764 444466677777


Q ss_pred             eeecccccceecCCcccCccCCcEEeCCCCcCc-ccCCcCCCCCCCCCEEEcc
Q 004747          588 YLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLT-GQIPGNISSLQELTLLNLS  639 (732)
Q Consensus       588 ~L~Ls~N~l~~~ip~l~~l~~L~~LdLs~N~l~-~~ip~~l~~l~~L~~L~ls  639 (732)
                      .|+|++|.+++..+.+..+++|+.|++++|.+. +.+|..+..++.|+.++++
T Consensus       218 ~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          218 WISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             EEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred             EEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence            777777777653333666677777777777766 5556666666666666665

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.93  E-value=1.6e-24  Score=244.09  Aligned_cols=266  Identities=24%  Similarity=0.265  Sum_probs=140.1

Q ss_pred             CCcEEEeeCcccccccCcccCCCCCCCEEEeecccCCCccccccccccEEECCCCcCccccCchhhcccccCeeeCCCCc
Q 004747          181 NLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNS  260 (732)
Q Consensus       181 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~  260 (732)
                      ++++|++++|.++ .+|..+.  ++|++|++++|.++.... .+.+|++|+|++|++++ +|.   .+++|++|++++|.
T Consensus        41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~~lp~-~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~  112 (622)
T 3g06_A           41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTSLPA-LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIFSNP  112 (622)
T ss_dssp             CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCSCCCC-CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEECSCC
T ss_pred             CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCCCCCC-cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECcCCc
Confidence            3455555555554 3444333  455555555555543222 33445555555555442 332   34555555555555


Q ss_pred             cccccchhhhccCCCCEEEeccCCCCCcCccccccCcCCcEEEccCCCCCCCCchhhhhcCCCCCccEEeCCCCcccCCC
Q 004747          261 VVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEI  340 (732)
Q Consensus       261 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~L~~L~Ls~n~l~~~~  340 (732)
                      +++ +|.   .+++|++|++++|+++. +|..   +++|++|++++|.+++ +|..      ..+|+.|++++|.+++ +
T Consensus       113 l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~~------~~~L~~L~L~~N~l~~-l  176 (622)
T 3g06_A          113 LTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPAL------PSELCKLWAYNNQLTS-L  176 (622)
T ss_dssp             CCC-CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCCC------CTTCCEEECCSSCCSC-C
T ss_pred             CCC-CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-cCCc------cCCCCEEECCCCCCCC-C
Confidence            553 222   34556666666665553 3322   3556666666666553 2221      1256666666666653 4


Q ss_pred             cccccCCCCCCEEeccCccCCCccccccCCCCCCCEEEccCCcCccccCccccCCcCcceeecccccccccCcccccCCC
Q 004747          341 PLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALD  420 (732)
Q Consensus       341 p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~  420 (732)
                      |   ..+++|+.|++++|.+++ +|..   +++|+.|++++|.++ .+|..   +++|+.|++++|.+++. |   ..++
T Consensus       177 ~---~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~-~l~~~---~~~L~~L~Ls~N~L~~l-p---~~l~  241 (622)
T 3g06_A          177 P---MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTSL-P---VLPS  241 (622)
T ss_dssp             C---CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-SCCCC---CTTCCEEECCSSCCSCC-C---CCCT
T ss_pred             c---ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCccc-ccCCC---CCCCCEEEccCCccCcC-C---CCCC
Confidence            4   334556666666666653 3321   355666666666655 23321   24555566666655542 2   3345


Q ss_pred             CCcEEEcccCceeeeccccCCCCCCCCEEEccCCcccccchhhhhcCCCCCEEEcccCCCccccchhhhc
Q 004747          421 SLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFS  490 (732)
Q Consensus       421 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~  490 (732)
                      +|+.|++++|.++ .+|.   .+++|+.|++++|+++ .+|..+..+++|+.|++++|++++..|..+..
T Consensus       242 ~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~  306 (622)
T 3g06_A          242 ELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALRE  306 (622)
T ss_dssp             TCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHH
T ss_pred             cCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHh
Confidence            6666666666666 3443   4556666666666666 45556666666666666666666666555443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.93  E-value=4.3e-26  Score=251.81  Aligned_cols=233  Identities=22%  Similarity=0.193  Sum_probs=141.2

Q ss_pred             CCCEEECCCCCCCCCCCccccCCCCCCEEeCCCCCCCCCcCCchhhhcccCCcEEEeeCcccccccCcccCCCCCCCEEE
Q 004747          131 GLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLD  210 (732)
Q Consensus       131 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~  210 (732)
                      +|++|+|++|.+++..|..|+.+++|++|+|++| .+.+..|  +..+ ++|++|++++|.+++..+     .++|++|+
T Consensus        35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~--l~~l-~~L~~L~Ls~N~l~~l~~-----~~~L~~L~  105 (487)
T 3oja_A           35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSN-VLYETLD--LESL-STLRTLDLNNNYVQELLV-----GPSIETLH  105 (487)
T ss_dssp             GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTS-CCEEEEE--CTTC-TTCCEEECCSSEEEEEEE-----CTTCCEEE
T ss_pred             CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCC-CCCCCcc--cccC-CCCCEEEecCCcCCCCCC-----CCCcCEEE
Confidence            4555555555555444445555555555555555 2222222  3444 566666666666654322     27788888


Q ss_pred             eecccCCCccccccccccEEECCCCcCccccCchhhcccccCeeeCCCCccccccchhhh-ccCCCCEEEeccCCCCCcC
Q 004747          211 LEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIA-SLQALTHLNLSHNHLNYEI  289 (732)
Q Consensus       211 Ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~-~l~~L~~L~L~~n~l~~~~  289 (732)
                      +++|.+++..+..+++|+.|++++|.+++..|..++.+++|++|++++|.+++..|..+. .+++|++|++++|.+++. 
T Consensus       106 L~~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-  184 (487)
T 3oja_A          106 AANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-  184 (487)
T ss_dssp             CCSSCCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-
T ss_pred             CcCCcCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-
Confidence            888888877777777778888888888777777777788888888888888877777665 677888888888877654 


Q ss_pred             ccccccCcCCcEEEccCCCCCCCCchhhhhcCCCCCccEEeCCCCcccCCCcccccCCCCCCEEeccCccCC-Ccccccc
Q 004747          290 SPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLI-GEIPARI  368 (732)
Q Consensus       290 ~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~-~~~p~~l  368 (732)
                       +....+++|+.|++++|.+++. |..+..++   +|+.|++++|.+++ +|..+..+++|+.|++++|.+. +.+|..+
T Consensus       185 -~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~---~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~  258 (487)
T 3oja_A          185 -KGQVVFAKLKTLDLSSNKLAFM-GPEFQSAA---GVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFF  258 (487)
T ss_dssp             -ECCCCCTTCCEEECCSSCCCEE-CGGGGGGT---TCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHH
T ss_pred             -cccccCCCCCEEECCCCCCCCC-CHhHcCCC---CccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHH
Confidence             2233466666666666666643 22344443   56666666666552 4545555555555555555554 3444444


Q ss_pred             CCCCCCCEEEc
Q 004747          369 GNLTYLQVIDL  379 (732)
Q Consensus       369 ~~l~~L~~L~L  379 (732)
                      ..++.|+.+++
T Consensus       259 ~~l~~L~~l~~  269 (487)
T 3oja_A          259 SKNQRVQTVAK  269 (487)
T ss_dssp             TTCHHHHHHHH
T ss_pred             HhCCCCcEEec
Confidence            44444444444

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.92  E-value=1.8e-24  Score=220.16  Aligned_cols=219  Identities=24%  Similarity=0.241  Sum_probs=165.9

Q ss_pred             CCCCCccceeecCCCCcEEEEEcCCCCCcccccccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEECCCCCCCCCC
Q 004747           67 SNCTNWTGVACNFQTGHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVV  146 (732)
Q Consensus        67 ~~~c~w~gv~c~~~~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~  146 (732)
                      .++|.|.|+.|. ..+.++.++++++.++ .+|..+.  +++++|++++|++++..+..|.++++|++|++++|.+++..
T Consensus         2 ~~~C~~~~~~C~-c~~~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~   77 (270)
T 2o6q_A            2 EALCKKDGGVCS-CNNNKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLP   77 (270)
T ss_dssp             CCCBGGGTCSBE-EETTTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCC
T ss_pred             CccCCCCCCCCE-eCCCCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeC
Confidence            478999999986 3345678999999888 4565554  68999999999998777778999999999999999999777


Q ss_pred             CccccCCCCCCEEeCCCCCCCCCcCCchhhhcccCCcEEEeeCcccccccCcccCCCCCCCEEEeecccCCCcccccccc
Q 004747          147 PDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQS  226 (732)
Q Consensus       147 p~~~~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~  226 (732)
                      +..|.++++|++|++++| .+.+..+..+..+ ++|++|++++|.+++..+..|..+++|++|++++|.+++..      
T Consensus        78 ~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~------  149 (270)
T 2o6q_A           78 AGIFKELKNLETLWVTDN-KLQALPIGVFDQL-VNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLP------  149 (270)
T ss_dssp             TTTTSSCTTCCEEECCSS-CCCCCCTTTTTTC-SSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC------
T ss_pred             hhhhcCCCCCCEEECCCC-cCCcCCHhHcccc-cCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccC------
Confidence            777788999999999998 4555555556666 78888888888888777777788888888888877766433      


Q ss_pred             ccEEECCCCcCccccCchhhcccccCeeeCCCCccccccchhhhccCCCCEEEeccCCCCCcCccccccCcCCcEEEccC
Q 004747          227 LLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSF  306 (732)
Q Consensus       227 L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~  306 (732)
                                     +..+..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|+.|++++
T Consensus       150 ---------------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~  214 (270)
T 2o6q_A          150 ---------------KGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQE  214 (270)
T ss_dssp             ---------------TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred             ---------------HhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecC
Confidence                           33455666777777777777665555667777777777777777755555566777777777777


Q ss_pred             CCCCCC
Q 004747          307 NDLSGP  312 (732)
Q Consensus       307 n~l~~~  312 (732)
                      |.+...
T Consensus       215 N~~~c~  220 (270)
T 2o6q_A          215 NPWDCT  220 (270)
T ss_dssp             SCBCCS
T ss_pred             CCeeCC
Confidence            776543

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.92  E-value=2.8e-24  Score=219.68  Aligned_cols=208  Identities=20%  Similarity=0.205  Sum_probs=138.7

Q ss_pred             cceeecccccccccCcccccCCCCCcEEEcccCceeeeccccCCCCCCCCEEEccCCcccccchhhhhcCCCCCEEEccc
Q 004747          398 LLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIAR  477 (732)
Q Consensus       398 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~  477 (732)
                      +++|++++|.+++..+..+..+++|++|++++|.+++..+..+.++++|++|++++|.+++..+..+..+++|++|++++
T Consensus        30 l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~  109 (276)
T 2z62_A           30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE  109 (276)
T ss_dssp             CCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred             ccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCC
Confidence            33444444444433333455556666666666666655555566666666666666666655555566666666666666


Q ss_pred             CCCccccchhhhcCCCCCEEEccCCcCccc-CCcccccCccccCcCCCCCCCCCCcccCCCceeEEeEEEeecCCchhhh
Q 004747          478 NKLSGNLPNWLFSFQAIQMMDFSTNKFMGF-IPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFN  556 (732)
Q Consensus       478 N~l~~~~p~~~~~~~~L~~L~ls~N~l~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  556 (732)
                      |++.+..+..+..+++|++|++++|.+++. +|..+                                            
T Consensus       110 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~--------------------------------------------  145 (276)
T 2z62_A          110 TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF--------------------------------------------  145 (276)
T ss_dssp             SCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGG--------------------------------------------
T ss_pred             CCccccCchhcccCCCCCEEECcCCccceecCchhh--------------------------------------------
Confidence            666655454566666666666666666542 23321                                            


Q ss_pred             hhcccceEEEccCCcccccCCcccccccCCc----eeecccccceecCCcccCccCCcEEeCCCCcCcccCCcCCCCCCC
Q 004747          557 YQLFSAVGMDLSDNLLHGTIPKGLFQLQGLE----YLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQE  632 (732)
Q Consensus       557 ~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~----~L~Ls~N~l~~~ip~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~  632 (732)
                      ..+++|+.|++++|++++..+..+..+.+|+    +|++++|.+++..+......+|+.|+|++|++++..+..|..+++
T Consensus       146 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~  225 (276)
T 2z62_A          146 SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTS  225 (276)
T ss_dssp             GGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCS
T ss_pred             ccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhccccc
Confidence            1256677777777777766666676666666    789999999877666666668999999999999877777899999


Q ss_pred             CCEEEcccCcceeeCCC
Q 004747          633 LTLLNLSYNSFSGFVPW  649 (732)
Q Consensus       633 L~~L~ls~N~l~g~ip~  649 (732)
                      |++|++++|++.+..|.
T Consensus       226 L~~L~l~~N~~~c~c~~  242 (276)
T 2z62_A          226 LQKIWLHTNPWDCSCPR  242 (276)
T ss_dssp             CCEEECCSSCBCCCTTT
T ss_pred             ccEEEccCCcccccCCc
Confidence            99999999999987764

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.90  E-value=3.1e-23  Score=211.92  Aligned_cols=226  Identities=26%  Similarity=0.225  Sum_probs=135.9

Q ss_pred             EeCCCCcccCCCcccccCCCCCCEEeccCccCCCccccccCCCCCCCEEEccCCcCccccCccccCCcCcceeecccccc
Q 004747          329 LDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNL  408 (732)
Q Consensus       329 L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l  408 (732)
                      .+..+..++ .+|..+.  ++|++|++++|.+++..+..+.++++|++|++++|.+++..+.                  
T Consensus        12 ~~c~~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~------------------   70 (276)
T 2z62_A           12 YQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDG------------------   70 (276)
T ss_dssp             EECTTSCCS-SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTT------------------
T ss_pred             EEecCCCcc-ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHH------------------
Confidence            444444444 3444332  3566666666666654444556666666666666655543333                  


Q ss_pred             cccCcccccCCCCCcEEEcccCceeeeccccCCCCCCCCEEEccCCcccccchhhhhcCCCCCEEEcccCCCccc-cchh
Q 004747          409 SGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGN-LPNW  487 (732)
Q Consensus       409 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~p~~  487 (732)
                            .+..+++|++|++++|.+++..+..+.++++|++|++++|.+.+..+..+..+++|++|++++|++.+. +|..
T Consensus        71 ------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~  144 (276)
T 2z62_A           71 ------AYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY  144 (276)
T ss_dssp             ------TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGG
T ss_pred             ------HccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchh
Confidence                  344455555555555555555555555666666666666666554444555666666666666666542 4666


Q ss_pred             hhcCCCCCEEEccCCcCcccCCcccccCccccCcCCCCCCCCCCcccCCCceeEEeEEEeecCCchhhhhhcccce-EEE
Q 004747          488 LFSFQAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAV-GMD  566 (732)
Q Consensus       488 ~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~-~Ld  566 (732)
                      +..+++|++|++++|++++..+..+ ..                                        ...++.+. .|+
T Consensus       145 ~~~l~~L~~L~Ls~N~l~~~~~~~~-~~----------------------------------------l~~L~~l~l~L~  183 (276)
T 2z62_A          145 FSNLTNLEHLDLSSNKIQSIYCTDL-RV----------------------------------------LHQMPLLNLSLD  183 (276)
T ss_dssp             GGGCTTCCEEECCSSCCCEECGGGG-HH----------------------------------------HHTCTTCCEEEE
T ss_pred             hccCCCCCEEECCCCCCCcCCHHHh-hh----------------------------------------hhhccccceeee
Confidence            6666666666666666654332221 11                                        01122232 688


Q ss_pred             ccCCcccccCCcccccccCCceeecccccceecCCc-ccCccCCcEEeCCCCcCcccC
Q 004747          567 LSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQI  623 (732)
Q Consensus       567 Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~-l~~l~~L~~LdLs~N~l~~~i  623 (732)
                      +++|++++ +|.......+|++|++++|++++..+. +.++++|+.|+|++|.+++..
T Consensus       184 ls~n~l~~-~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c  240 (276)
T 2z62_A          184 LSLNPMNF-IQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  240 (276)
T ss_dssp             CCSSCCCE-ECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCT
T ss_pred             cCCCcccc-cCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccC
Confidence            88888884 444444555899999999999866666 678999999999999998654

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.90  E-value=2.5e-23  Score=211.96  Aligned_cols=224  Identities=21%  Similarity=0.210  Sum_probs=133.3

Q ss_pred             ccCeeeCCCCccccccchhhhccCCCCEEEeccCCCCCcCccccccCcCCcEEEccCCCCCCCCchhhhhcCCCCCccEE
Q 004747          250 SLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLL  329 (732)
Q Consensus       250 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~L~~L  329 (732)
                      ++..+++..+.+.+..  ....+++|++|++++|.++..  +.+..+++|++|++++|.+++ ++ .+..++   +|++|
T Consensus        20 ~l~~l~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~-~~-~l~~l~---~L~~L   90 (272)
T 3rfs_A           20 ETIKANLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHD-IS-ALKELT---NLTYL   90 (272)
T ss_dssp             HHHHHHHTCSCTTSEE--CHHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCC-CG-GGTTCT---TCCEE
T ss_pred             HHHHHHhcCccccccc--ccccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCC-ch-hhcCCC---CCCEE
Confidence            4455666666665432  355677788888887777632  346677777777777777764 22 333333   67777


Q ss_pred             eCCCCcccCCCcccccCCCCCCEEeccCccCCCccccccCCCCCCCEEEccCCcCccccCccccCCcCcceeeccccccc
Q 004747          330 DLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLS  409 (732)
Q Consensus       330 ~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~  409 (732)
                      ++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|+++
T Consensus        91 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  170 (272)
T 3rfs_A           91 ILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ  170 (272)
T ss_dssp             ECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             ECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcC
Confidence            77777777655556677777777777777777666666677777777777777776554444455555555555555555


Q ss_pred             ccCcccccCCCCCcEEEcccCceeeeccccCCCCCCCCEEEccCCcccccchhhhhcCCCCCEEEcccCCCccccchhhh
Q 004747          410 GEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLF  489 (732)
Q Consensus       410 ~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~  489 (732)
                      +..+..+..+++|+.|++++|++++..+..+..+++|++|++++|.+.+.       +++|+.+++..|.++|.+|.+++
T Consensus       171 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~  243 (272)
T 3rfs_A          171 SLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAG  243 (272)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTS
T ss_pred             ccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCccc
Confidence            44444445555555555555555544444455555555555555554432       23444455555555555554443

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.90  E-value=1.7e-23  Score=213.13  Aligned_cols=159  Identities=22%  Similarity=0.205  Sum_probs=73.3

Q ss_pred             cCCCCCCEEeccCccCCCccccccCCCCCCCEEEccCCcCccccCccccCCcCcceeecccccccccCcccccCCCCCcE
Q 004747          345 TELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKI  424 (732)
Q Consensus       345 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  424 (732)
                      ..+++|++|++++|.+++.  ..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++
T Consensus        60 ~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  137 (272)
T 3rfs_A           60 QYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTY  137 (272)
T ss_dssp             GGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred             ccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCE
Confidence            3334444444444444321  13344444444444444444333333333333333333333333333333444555555


Q ss_pred             EEcccCceeeeccccCCCCCCCCEEEccCCcccccchhhhhcCCCCCEEEcccCCCccccchhhhcCCCCCEEEccCCcC
Q 004747          425 LDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKF  504 (732)
Q Consensus       425 L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~ls~N~l  504 (732)
                      |++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|++++..|..+..+++|+.|++++|++
T Consensus       138 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~  217 (272)
T 3rfs_A          138 LNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW  217 (272)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             EECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCc
Confidence            55555555544444445555555555555555544444445555555555555555544444445555555555555544


Q ss_pred             c
Q 004747          505 M  505 (732)
Q Consensus       505 ~  505 (732)
                      .
T Consensus       218 ~  218 (272)
T 3rfs_A          218 D  218 (272)
T ss_dssp             C
T ss_pred             c
Confidence            3

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.89  E-value=3.7e-24  Score=227.70  Aligned_cols=181  Identities=21%  Similarity=0.232  Sum_probs=88.4

Q ss_pred             EEccCCCCCCCCchhhhhcCCCCCccEEeCCCCcccCCCc----ccccCCC-CCCEEeccCccCCCccccccCCC-----
Q 004747          302 LDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIP----LKITELK-SLQALFLSNNLLIGEIPARIGNL-----  371 (732)
Q Consensus       302 L~Ls~n~l~~~~p~~~~~l~~~~~L~~L~Ls~n~l~~~~p----~~l~~l~-~L~~L~Ls~n~l~~~~p~~l~~l-----  371 (732)
                      +++++|.++|.+|..+....   +|++|++++|.+++..+    ..+..++ +|++|++++|.+++..+..+..+     
T Consensus         3 ~~ls~n~~~~~~~~~~~~~~---~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~   79 (362)
T 3goz_A            3 YKLTLHPGSNPVEEFTSIPH---GVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIP   79 (362)
T ss_dssp             EECCCCTTCCHHHHHHTSCT---TCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSC
T ss_pred             cccccccchHHHHHHHhCCC---CceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccC
Confidence            45566666655554433332   46666666666654433    4444555 56666666665555444444332     


Q ss_pred             CCCCEEEccCCcCccccCccccCCcCcceeecccccccccCcccccCC-CCCcEEEcccCceeeecccc----CCC-CCC
Q 004747          372 TYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDAL-DSLKILDISNNQISGEIPLT----LAG-LKS  445 (732)
Q Consensus       372 ~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~p~~----~~~-l~~  445 (732)
                      ++|++|++++|.+++..+..+..                    .+..+ ++|++|++++|.+++..+..    +.. .++
T Consensus        80 ~~L~~L~Ls~n~l~~~~~~~l~~--------------------~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~  139 (362)
T 3goz_A           80 ANVTSLNLSGNFLSYKSSDELVK--------------------TLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPAS  139 (362)
T ss_dssp             TTCCEEECCSSCGGGSCHHHHHH--------------------HHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTT
T ss_pred             CCccEEECcCCcCChHHHHHHHH--------------------HHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCc
Confidence            55555555555555433332221                    12222 45555555555555433322    222 245


Q ss_pred             CCEEEccCCcccccc----hhhhhcCC-CCCEEEcccCCCccccchhhh----cC-CCCCEEEccCCcCc
Q 004747          446 LEIVDFSSNNLSGSL----NDAITKWT-NLKYFSIARNKLSGNLPNWLF----SF-QAIQMMDFSTNKFM  505 (732)
Q Consensus       446 L~~L~Ls~N~l~~~~----~~~~~~l~-~L~~L~L~~N~l~~~~p~~~~----~~-~~L~~L~ls~N~l~  505 (732)
                      |++|++++|.+++..    +..+..++ +|++|++++|++++..+..+.    .+ ++|++||+++|.++
T Consensus       140 L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~  209 (362)
T 3goz_A          140 ITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLG  209 (362)
T ss_dssp             CCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred             eeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCC
Confidence            666666666555322    22333333 566666666655544443222    23 35666666666554

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.89  E-value=4.8e-22  Score=202.19  Aligned_cols=204  Identities=23%  Similarity=0.230  Sum_probs=147.1

Q ss_pred             CcEEEccCCCCCCCCchhhhhcCCCCCccEEeCCCCcccCCCcccccCCCCCCEEeccCccCCCccccccCCCCCCCEEE
Q 004747          299 LLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVID  378 (732)
Q Consensus       299 L~~L~Ls~n~l~~~~p~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~  378 (732)
                      .+.++++++.++ .+|..+.     ++++.|++++|++++..+..+..+++|++|++++|.+++..+..|.++++|++|+
T Consensus        18 ~~~l~~~~~~l~-~ip~~~~-----~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~   91 (270)
T 2o6q_A           18 KNSVDCSSKKLT-AIPSNIP-----ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLW   91 (270)
T ss_dssp             TTEEECTTSCCS-SCCSCCC-----TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEE
T ss_pred             CCEEEccCCCCC-ccCCCCC-----CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEE
Confidence            455566666555 3443332     1566777777777655555667777777777777777654445556677777777


Q ss_pred             ccCCcCccccCccccCCcCcceeecccccccccCcccccCCCCCcEEEcccCceeeeccccCCCCCCCCEEEccCCcccc
Q 004747          379 LSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSG  458 (732)
Q Consensus       379 Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  458 (732)
                      +++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++++
T Consensus        92 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  171 (270)
T 2o6q_A           92 VTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKR  171 (270)
T ss_dssp             CCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred             CCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcE
Confidence            77777776555566677777777777777777777777788888888888888886666667888888888888888887


Q ss_pred             cchhhhhcCCCCCEEEcccCCCccccchhhhcCCCCCEEEccCCcCcccC
Q 004747          459 SLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFI  508 (732)
Q Consensus       459 ~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~ls~N~l~~~~  508 (732)
                      ..+..+..+++|++|++++|++++..+..+..+++|+.|++++|++....
T Consensus       172 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c  221 (270)
T 2o6q_A          172 VPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTC  221 (270)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSS
T ss_pred             eChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCC
Confidence            76777788888888888888888666666778888888888888876543

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.88  E-value=4.3e-24  Score=225.04  Aligned_cols=270  Identities=19%  Similarity=0.197  Sum_probs=168.2

Q ss_pred             CCCCCccceeecCCCCcEEEEEcCCCCCcccccccccCC--CCCCEEECCCCCCCCcccccccCCCCCCEEECCCCCCCC
Q 004747           67 SNCTNWTGVACNFQTGHVVSINLTDTSLSGQVHPRLCKL--SFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVG  144 (732)
Q Consensus        67 ~~~c~w~gv~c~~~~~~v~~L~L~~~~l~~~~~~~l~~l--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~  144 (732)
                      ..|..|.++.|+  ...++.++++++.+.   +..+..+  ++++.|++++|.+.+..+. +..+++|++|++++|.+++
T Consensus        34 ~vc~~W~~~~~~--~~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~  107 (336)
T 2ast_B           34 GVCKRWYRLASD--ESLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEV  107 (336)
T ss_dssp             SSCHHHHHHHTC--STTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECH
T ss_pred             HHHHHHHHHhcC--chhheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCH
Confidence            456789988875  345677888887765   3345555  7788888888888766555 4567888888888887765


Q ss_pred             C-CCccccCCCCCCEEeCCCCCCCCCcCCchhhhcccCCcEEEeeCc-ccccc-cCcccCCCCCCCEEEeecc-cCCCcc
Q 004747          145 V-VPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFN-SFCGE-IPESLYYLKSLKHLDLEKN-NLTGNV  220 (732)
Q Consensus       145 ~-~p~~~~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~~L~~L~Ls~n-~l~~~-~p~~l~~l~~L~~L~Ls~n-~l~~~~  220 (732)
                      . +|..+..+++|++|++++| .+++..+..++.+ ++|++|++++| .+++. ++..+.++++|++|++++| .+++. 
T Consensus       108 ~~~~~~~~~~~~L~~L~L~~~-~l~~~~~~~l~~~-~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~-  184 (336)
T 2ast_B          108 STLHGILSQCSKLQNLSLEGL-RLSDPIVNTLAKN-SNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEK-  184 (336)
T ss_dssp             HHHHHHHTTBCCCSEEECTTC-BCCHHHHHHHTTC-TTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHH-
T ss_pred             HHHHHHHhhCCCCCEEeCcCc-ccCHHHHHHHhcC-CCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChH-
Confidence            4 6666777777777777777 3455555556555 66777777666 45542 4444556666666666666 55431 


Q ss_pred             ccccccccEEECCCCcCccccCchhhccc-ccCeeeCCCC--ccc-cccchhhhccCCCCEEEeccCC-CCCcCcccccc
Q 004747          221 HDFYQSLLVLNLGSNRFSGTLPCFAASAM-SLTVLKLDNN--SVV-GGIPTCIASLQALTHLNLSHNH-LNYEISPRLVF  295 (732)
Q Consensus       221 ~~~~~~L~~L~L~~n~l~~~~~~~~~~~~-~L~~L~Ls~n--~l~-~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~l~~  295 (732)
                                         .++..+..++ +|++|++++|  .++ +.++..+..+++|++|++++|. +++..+..+..
T Consensus       185 -------------------~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~  245 (336)
T 2ast_B          185 -------------------HVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQ  245 (336)
T ss_dssp             -------------------HHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGG
T ss_pred             -------------------HHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhC
Confidence                               1344555666 6777777766  333 3445556667777777777776 55555666667


Q ss_pred             CcCCcEEEccCCCCCCCCchhhhhcCCCCCccEEeCCCCcccCCCcccccCC-CCCCEEeccCccCCCccccccCC
Q 004747          296 FEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITEL-KSLQALFLSNNLLIGEIPARIGN  370 (732)
Q Consensus       296 l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l-~~L~~L~Ls~n~l~~~~p~~l~~  370 (732)
                      +++|++|++++|.  +..+..+..+..+++|+.|++++| ++..   .+..+ ..++.|++++|++++..|..++.
T Consensus       246 l~~L~~L~l~~~~--~~~~~~~~~l~~~~~L~~L~l~~~-i~~~---~~~~l~~~l~~L~l~~n~l~~~~~~~~~~  315 (336)
T 2ast_B          246 LNYLQHLSLSRCY--DIIPETLLELGEIPTLKTLQVFGI-VPDG---TLQLLKEALPHLQINCSHFTTIARPTIGN  315 (336)
T ss_dssp             CTTCCEEECTTCT--TCCGGGGGGGGGCTTCCEEECTTS-SCTT---CHHHHHHHSTTSEESCCCSCCTTCSSCSS
T ss_pred             CCCCCEeeCCCCC--CCCHHHHHHHhcCCCCCEEeccCc-cCHH---HHHHHHhhCcceEEecccCccccCCcccc
Confidence            7777777777774  223332222333346777777776 3322   12222 23556667777777776665543

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.88  E-value=1.6e-23  Score=217.73  Aligned_cols=223  Identities=23%  Similarity=0.250  Sum_probs=125.8

Q ss_pred             CCCEEeccCccCCCcccc---ccCCCCCCCEEEccCCcCccccCccc--cCCcCcceeecccccccccCc----ccccCC
Q 004747          349 SLQALFLSNNLLIGEIPA---RIGNLTYLQVIDLSHNMLSGSIPLNI--VGCFQLLALIVNNNNLSGEIQ----PELDAL  419 (732)
Q Consensus       349 ~L~~L~Ls~n~l~~~~p~---~l~~l~~L~~L~Ls~n~l~~~~p~~~--~~~~~L~~L~l~~n~l~~~~~----~~~~~l  419 (732)
                      .++.+.+.++.++...-.   .+..+++|++|++++|.+++..|..+  ..+++|++|++++|.+.+..+    ..+..+
T Consensus        65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~  144 (310)
T 4glp_A           65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK  144 (310)
T ss_dssp             CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred             ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence            466777777665432110   11223557777777777777777666  666667777777776665433    223345


Q ss_pred             CCCcEEEcccCceeeeccccCCCCCCCCEEEccCCccccc--ch--hhhhcCCCCCEEEcccCCCccccch----hhhcC
Q 004747          420 DSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGS--LN--DAITKWTNLKYFSIARNKLSGNLPN----WLFSF  491 (732)
Q Consensus       420 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~--~~--~~~~~l~~L~~L~L~~N~l~~~~p~----~~~~~  491 (732)
                      ++|++|++++|.+.+..+..+..+++|++|++++|++.+.  ++  ..+..+++|++|++++|+++. ++.    .+.. 
T Consensus       145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~-  222 (310)
T 4glp_A          145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAA-  222 (310)
T ss_dssp             SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHH-
T ss_pred             cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhc-
Confidence            5666666666666555555555666666666666655432  11  112344555555555555431 111    1223 


Q ss_pred             CCCCEEEccCCcCcccCCcccccCccccCcCCCCCCCCCCcccCCCceeEEeEEEeecCCchhhhhhcccceEEEccCCc
Q 004747          492 QAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVGMDLSDNL  571 (732)
Q Consensus       492 ~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~  571 (732)
                                                                                         +++|++|||++|+
T Consensus       223 -------------------------------------------------------------------l~~L~~L~Ls~N~  235 (310)
T 4glp_A          223 -------------------------------------------------------------------GVQPHSLDLSHNS  235 (310)
T ss_dssp             -------------------------------------------------------------------TCCCSSEECTTSC
T ss_pred             -------------------------------------------------------------------CCCCCEEECCCCC
Confidence                                                                               4455555666666


Q ss_pred             ccccCCcccccc---cCCceeecccccceecCCc-ccCccCCcEEeCCCCcCcccCCcCCCCCCCCCEEEcccCccee
Q 004747          572 LHGTIPKGLFQL---QGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSG  645 (732)
Q Consensus       572 l~g~ip~~l~~l---~~L~~L~Ls~N~l~~~ip~-l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g  645 (732)
                      +++.+|..++.+   ++|++|+|++|+++ .+|. +.  ++|++|||++|++++. |. +..+++|+.|++++|+++.
T Consensus       236 l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          236 LRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             CCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred             CCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence            655555555554   46666777777666 4454 43  5777777777777753 32 4566777777777777653

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.88  E-value=3.2e-23  Score=220.44  Aligned_cols=160  Identities=24%  Similarity=0.225  Sum_probs=91.3

Q ss_pred             EECCCCcCccccCchhhcccccCeeeCCCCccccccc----hhhhccC-CCCEEEeccCCCCCcCccccccC-----cCC
Q 004747          230 LNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIP----TCIASLQ-ALTHLNLSHNHLNYEISPRLVFF-----EKL  299 (732)
Q Consensus       230 L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~----~~l~~l~-~L~~L~L~~n~l~~~~~~~l~~l-----~~L  299 (732)
                      ++++.|.+++.+|..+...++|++|++++|.+++..+    ..+..++ +|++|++++|.+++..+..+..+     ++|
T Consensus         3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L   82 (362)
T 3goz_A            3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV   82 (362)
T ss_dssp             EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred             cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence            4555666666666665555567777777777665554    4555666 67777777776665555555543     666


Q ss_pred             cEEEccCCCCCCCCchhhhhc-CCC-CCccEEeCCCCcccCCCcccc----cC-CCCCCEEeccCccCCCcc----cccc
Q 004747          300 LLLDLSFNDLSGPLPSKIAQT-TEK-AGLVLLDLSHNRFSGEIPLKI----TE-LKSLQALFLSNNLLIGEI----PARI  368 (732)
Q Consensus       300 ~~L~Ls~n~l~~~~p~~~~~l-~~~-~~L~~L~Ls~n~l~~~~p~~l----~~-l~~L~~L~Ls~n~l~~~~----p~~l  368 (732)
                      ++|++++|.+++..+..+... ... ++|++|++++|.+++..+..+    .. .++|++|++++|.+++..    +..+
T Consensus        83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l  162 (362)
T 3goz_A           83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL  162 (362)
T ss_dssp             CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred             cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence            667776666665555544432 111 256666666666664443332    22 246666666666665422    2233


Q ss_pred             CCCC-CCCEEEccCCcCccccC
Q 004747          369 GNLT-YLQVIDLSHNMLSGSIP  389 (732)
Q Consensus       369 ~~l~-~L~~L~Ls~n~l~~~~p  389 (732)
                      ..++ +|++|++++|.+++..+
T Consensus       163 ~~~~~~L~~L~Ls~n~l~~~~~  184 (362)
T 3goz_A          163 AAIPANVNSLNLRGNNLASKNC  184 (362)
T ss_dssp             HTSCTTCCEEECTTSCGGGSCH
T ss_pred             hcCCccccEeeecCCCCchhhH
Confidence            3443 66666666666654443

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.88  E-value=7.4e-22  Score=202.63  Aligned_cols=204  Identities=24%  Similarity=0.250  Sum_probs=149.8

Q ss_pred             cccCcCCcEEEccCCCCCCCCchhhhhcCCCCCccEEeCCCCcccCCCcccccCCCCCCEEeccCccCCCccccccCCCC
Q 004747          293 LVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLT  372 (732)
Q Consensus       293 l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~  372 (732)
                      +..+++++.++++++.++ .+|..+.     ++++.|++++|.+++..+..+..+++|++|++++|.+++. +. ...++
T Consensus         6 ~~~l~~l~~l~~~~~~l~-~ip~~~~-----~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~-~~~l~   77 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLT-ALPPDLP-----KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-QV-DGTLP   77 (290)
T ss_dssp             EECSTTCCEEECTTSCCS-SCCSCCC-----TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-EC-CSCCT
T ss_pred             ccccCCccEEECCCCCCC-cCCCCCC-----CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc-cC-CCCCC
Confidence            344555566666666555 3443332     1566677777777655566667777777777777777643 22 25677


Q ss_pred             CCCEEEccCCcCccccCccccCCcCcceeecccccccccCcccccCCCCCcEEEcccCceeeeccccCCCCCCCCEEEcc
Q 004747          373 YLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFS  452 (732)
Q Consensus       373 ~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls  452 (732)
                      +|++|++++|.++ .+|..+..+++|+.|++++|++++..+..|..+++|++|++++|++++..+..|..+++|+.|+++
T Consensus        78 ~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~  156 (290)
T 1p9a_G           78 VLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA  156 (290)
T ss_dssp             TCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             cCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECC
Confidence            7777777777776 566666777777777777777777766778888888899999988887766777888899999999


Q ss_pred             CCcccccchhhhhcCCCCCEEEcccCCCccccchhhhcCCCCCEEEccCCcCcc
Q 004747          453 SNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMG  506 (732)
Q Consensus       453 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~ls~N~l~~  506 (732)
                      +|++++..+..+..+++|++|++++|+++ .+|..+....+|+.+++++|++..
T Consensus       157 ~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C  209 (290)
T 1p9a_G          157 NNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC  209 (290)
T ss_dssp             TSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred             CCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccC
Confidence            99988766667788889999999999988 778888888899999999998853

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.88  E-value=1.6e-23  Score=225.03  Aligned_cols=185  Identities=21%  Similarity=0.258  Sum_probs=115.3

Q ss_pred             CccEEeCCCCcccC----CCcccccCCCCCCEEeccCccCCCccccc----cCCC---------CCCCEEEccCCcCc-c
Q 004747          325 GLVLLDLSHNRFSG----EIPLKITELKSLQALFLSNNLLIGEIPAR----IGNL---------TYLQVIDLSHNMLS-G  386 (732)
Q Consensus       325 ~L~~L~Ls~n~l~~----~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~----l~~l---------~~L~~L~Ls~n~l~-~  386 (732)
                      +|++|++++|.+++    .+|..+..+++|++|+|++|.+++..+..    +..+         ++|++|++++|.++ +
T Consensus        95 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~  174 (386)
T 2ca6_A           95 KLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENG  174 (386)
T ss_dssp             TCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGG
T ss_pred             cccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcH
Confidence            45555555555554    24444455555555555555554322222    2222         56666666666655 2


Q ss_pred             ccC---ccccCCcCcceeecccccccc-----cCcccccCCCCCcEEEcccCcee----eeccccCCCCCCCCEEEccCC
Q 004747          387 SIP---LNIVGCFQLLALIVNNNNLSG-----EIQPELDALDSLKILDISNNQIS----GEIPLTLAGLKSLEIVDFSSN  454 (732)
Q Consensus       387 ~~p---~~~~~~~~L~~L~l~~n~l~~-----~~~~~~~~l~~L~~L~L~~n~l~----~~~p~~~~~l~~L~~L~Ls~N  454 (732)
                      .++   ..+..+++|+.|++++|.+..     ..+..+..+++|+.|+|++|.++    +.+|..+..+++|++|++++|
T Consensus       175 ~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n  254 (386)
T 2ca6_A          175 SMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDC  254 (386)
T ss_dssp             GHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTC
T ss_pred             HHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCC
Confidence            233   244455566666666666552     23335667778888888888875    456677777888888888888


Q ss_pred             ccccc----chhhhhc--CCCCCEEEcccCCCcc----ccchhh-hcCCCCCEEEccCCcCcccCC
Q 004747          455 NLSGS----LNDAITK--WTNLKYFSIARNKLSG----NLPNWL-FSFQAIQMMDFSTNKFMGFIP  509 (732)
Q Consensus       455 ~l~~~----~~~~~~~--l~~L~~L~L~~N~l~~----~~p~~~-~~~~~L~~L~ls~N~l~~~~p  509 (732)
                      .+++.    ++..+..  +++|++|+|++|.+++    .+|..+ ..+++|++|++++|++++..+
T Consensus       255 ~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          255 LLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD  320 (386)
T ss_dssp             CCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred             CCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence            88765    4555533  7888888888888876    467766 557888888888888876543

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.88  E-value=4.3e-23  Score=217.35  Aligned_cols=80  Identities=19%  Similarity=0.186  Sum_probs=35.4

Q ss_pred             CcEEEccCCCCCCCCchhhhhc--CCCCCccEEeCCCCcccCCCcccccCCCCCCEEeccCccCCCc-cccccCCCCCCC
Q 004747          299 LLLLDLSFNDLSGPLPSKIAQT--TEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGE-IPARIGNLTYLQ  375 (732)
Q Consensus       299 L~~L~Ls~n~l~~~~p~~~~~l--~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~  375 (732)
                      ++.++++++.+.   +..+..+  .   +++.|++++|.+.+..+. +..+++|++|++++|.+++. ++..+..+++|+
T Consensus        49 ~~~l~l~~~~~~---~~~~~~~~~~---~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~  121 (336)
T 2ast_B           49 WQTLDLTGKNLH---PDVTGRLLSQ---GVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQ  121 (336)
T ss_dssp             SSEEECTTCBCC---HHHHHHHHHT---TCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCS
T ss_pred             heeeccccccCC---HHHHHhhhhc---cceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCC
Confidence            455555555544   2233332  2   455555555555433332 23344444444444444432 333444444444


Q ss_pred             EEEccCCcCc
Q 004747          376 VIDLSHNMLS  385 (732)
Q Consensus       376 ~L~Ls~n~l~  385 (732)
                      +|++++|.++
T Consensus       122 ~L~L~~~~l~  131 (336)
T 2ast_B          122 NLSLEGLRLS  131 (336)
T ss_dssp             EEECTTCBCC
T ss_pred             EEeCcCcccC
Confidence            4444444443

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.87  E-value=9.2e-22  Score=197.80  Aligned_cols=142  Identities=27%  Similarity=0.324  Sum_probs=99.4

Q ss_pred             CCCCccceeecCCCCcEEEEEcCCCCCcccccccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEECCCCCCCCCCC
Q 004747           68 NCTNWTGVACNFQTGHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVP  147 (732)
Q Consensus        68 ~~c~w~gv~c~~~~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p  147 (732)
                      +||.|.|..|..   ..+.++++++.++ .+|..+.  +++++|++++|.+++..+..|.++++|++|+|++|.+++..|
T Consensus         3 ~Cp~~~gC~C~~---~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~   76 (251)
T 3m19_A            3 TCETVTGCTCNE---GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSA   76 (251)
T ss_dssp             -CHHHHSSEEEG---GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT
T ss_pred             cCCCCCceEcCC---CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCH
Confidence            689999999952   2346788888887 4555554  588899999999888888788888899999999998888877


Q ss_pred             ccccCCCCCCEEeCCCCCCCCCcCCchhhhcccCCcEEEeeCcccccccCcccCCCCCCCEEEeecccCC
Q 004747          148 DAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLT  217 (732)
Q Consensus       148 ~~~~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~  217 (732)
                      ..|..+++|++|+|++| .+++..+..+..+ ++|++|++++|.+++..+..+..+++|++|+|++|.++
T Consensus        77 ~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~  144 (251)
T 3m19_A           77 GVFDDLTELGTLGLANN-QLASLPLGVFDHL-TQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ  144 (251)
T ss_dssp             TTTTTCTTCCEEECTTS-CCCCCCTTTTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             hHhccCCcCCEEECCCC-cccccChhHhccc-CCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCC
Confidence            77888888888888887 4444444445555 56666666666665444444455555555555555443

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.87  E-value=2e-22  Score=209.51  Aligned_cols=181  Identities=13%  Similarity=0.135  Sum_probs=140.2

Q ss_pred             CccEEeCCCCcccCCCcc---cccCCCCCCEEeccCccCCCcccccc--CCCCCCCEEEccCCcCccccC----ccccCC
Q 004747          325 GLVLLDLSHNRFSGEIPL---KITELKSLQALFLSNNLLIGEIPARI--GNLTYLQVIDLSHNMLSGSIP----LNIVGC  395 (732)
Q Consensus       325 ~L~~L~Ls~n~l~~~~p~---~l~~l~~L~~L~Ls~n~l~~~~p~~l--~~l~~L~~L~Ls~n~l~~~~p----~~~~~~  395 (732)
                      .++.+.+.++.++...-.   .+..+++|++|++++|.+++..|..+  ..+++|++|++++|.+++..+    ..+..+
T Consensus        65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~  144 (310)
T 4glp_A           65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK  144 (310)
T ss_dssp             CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred             ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence            578888888877532111   12234679999999999999999888  899999999999999997655    344578


Q ss_pred             cCcceeecccccccccCcccccCCCCCcEEEcccCceeee--c--cccCCCCCCCCEEEccCCcccccc--hh-hhhcCC
Q 004747          396 FQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGE--I--PLTLAGLKSLEIVDFSSNNLSGSL--ND-AITKWT  468 (732)
Q Consensus       396 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~--p~~~~~l~~L~~L~Ls~N~l~~~~--~~-~~~~l~  468 (732)
                      ++|++|++++|.+.+..+..+..+++|++|++++|++.+.  +  +..+..+++|++|++++|+++...  +. .+..++
T Consensus       145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~  224 (310)
T 4glp_A          145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGV  224 (310)
T ss_dssp             SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTC
T ss_pred             cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCC
Confidence            9999999999999999999999999999999999998753  2  233478999999999999997322  22 357889


Q ss_pred             CCCEEEcccCCCccccchhhhcC---CCCCEEEccCCcCc
Q 004747          469 NLKYFSIARNKLSGNLPNWLFSF---QAIQMMDFSTNKFM  505 (732)
Q Consensus       469 ~L~~L~L~~N~l~~~~p~~~~~~---~~L~~L~ls~N~l~  505 (732)
                      +|++|++++|++.+..|..+..+   ++|++|++++|+++
T Consensus       225 ~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~  264 (310)
T 4glp_A          225 QPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE  264 (310)
T ss_dssp             CCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC
T ss_pred             CCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC
Confidence            99999999999987767655444   34444444444443

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.87  E-value=2.9e-21  Score=198.15  Aligned_cols=180  Identities=26%  Similarity=0.213  Sum_probs=107.3

Q ss_pred             cCCCCCCCEEEeecccCCCccccccccccEEECCCCcCccccCchhhcccccCeeeCCCCccccccchhhhccCCCCEEE
Q 004747          200 LYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLN  279 (732)
Q Consensus       200 l~~l~~L~~L~Ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~  279 (732)
                      +.+++++++++++++.++...+.....+++|++++|.+++..+..+..+++|++|++++|.+++..+  .+.+++|++|+
T Consensus         6 ~~~l~~l~~l~~~~~~l~~ip~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~   83 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGTLD   83 (290)
T ss_dssp             EECSTTCCEEECTTSCCSSCCSCCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCEEE
T ss_pred             ccccCCccEEECCCCCCCcCCCCCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCCEEE
Confidence            5566777777777777765554444556666666666666666666677777777777777664332  25566666666


Q ss_pred             eccCCCCCcCccccccCcCCcEEEccCCCCCCCCchhhhhcCCCCCccEEeCCCCcccCCCcccccCCCCCCEEeccCcc
Q 004747          280 LSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNL  359 (732)
Q Consensus       280 L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~  359 (732)
                      +++|+++ .+|..+..+++|++|++++|++++..+..+..+.   +|++|++++|++++..+..+..+++|+.|++++|+
T Consensus        84 Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~---~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  159 (290)
T 1p9a_G           84 LSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLG---ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN  159 (290)
T ss_dssp             CCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCT---TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred             CCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCC---CCCEEECCCCCCCccChhhcccccCCCEEECCCCc
Confidence            6666665 4455555666666666666666544444444444   55566666665554444445555555566665555


Q ss_pred             CCCccccccCCCCCCCEEEccCCcCc
Q 004747          360 LIGEIPARIGNLTYLQVIDLSHNMLS  385 (732)
Q Consensus       360 l~~~~p~~l~~l~~L~~L~Ls~n~l~  385 (732)
                      +++..+..+..+++|++|++++|.++
T Consensus       160 l~~l~~~~~~~l~~L~~L~L~~N~l~  185 (290)
T 1p9a_G          160 LTELPAGLLNGLENLDTLLLQENSLY  185 (290)
T ss_dssp             CSCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             CCccCHHHhcCcCCCCEEECCCCcCC
Confidence            55443344455555555555555554

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.87  E-value=6e-23  Score=220.55  Aligned_cols=258  Identities=20%  Similarity=0.242  Sum_probs=173.3

Q ss_pred             cCchhhcccccCeeeCCCCccccccchh----hhccCCCCEEEeccCC---CCCcCcccc-------ccCcCCcEEEccC
Q 004747          241 LPCFAASAMSLTVLKLDNNSVVGGIPTC----IASLQALTHLNLSHNH---LNYEISPRL-------VFFEKLLLLDLSF  306 (732)
Q Consensus       241 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~----l~~l~~L~~L~L~~n~---l~~~~~~~l-------~~l~~L~~L~Ls~  306 (732)
                      ++..+..+++|++|++++|.+.+..+..    +..+++|++|++++|.   +++.+|..+       ..+++|++|+|++
T Consensus        24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~  103 (386)
T 2ca6_A           24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD  103 (386)
T ss_dssp             TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred             HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence            4455566666777777777666543333    4456677777776643   333444443       5667777777777


Q ss_pred             CCCCC----CCchhhhhcCCCCCccEEeCCCCcccCCCcccc----cCC---------CCCCEEeccCccCC-Cccc---
Q 004747          307 NDLSG----PLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKI----TEL---------KSLQALFLSNNLLI-GEIP---  365 (732)
Q Consensus       307 n~l~~----~~p~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l----~~l---------~~L~~L~Ls~n~l~-~~~p---  365 (732)
                      |.+++    .+|..+..++   +|++|++++|.+++..+..+    ..+         ++|++|++++|+++ +.++   
T Consensus       104 n~l~~~~~~~l~~~l~~~~---~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~  180 (386)
T 2ca6_A          104 NAFGPTAQEPLIDFLSKHT---PLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWA  180 (386)
T ss_dssp             CCCCTTTHHHHHHHHHHCT---TCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHH
T ss_pred             CcCCHHHHHHHHHHHHhCC---CCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHH
Confidence            77765    2444555544   67777777777753333222    223         67888888888776 3344   


Q ss_pred             cccCCCCCCCEEEccCCcCc--c---ccCccccCCcCcceeeccccccc----ccCcccccCCCCCcEEEcccCceeee-
Q 004747          366 ARIGNLTYLQVIDLSHNMLS--G---SIPLNIVGCFQLLALIVNNNNLS----GEIQPELDALDSLKILDISNNQISGE-  435 (732)
Q Consensus       366 ~~l~~l~~L~~L~Ls~n~l~--~---~~p~~~~~~~~L~~L~l~~n~l~----~~~~~~~~~l~~L~~L~L~~n~l~~~-  435 (732)
                      ..+..+++|+.|++++|.++  |   ..+..+..+++|+.|++++|.++    +.++..+..+++|+.|+|++|.+++. 
T Consensus       181 ~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~  260 (386)
T 2ca6_A          181 KTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARG  260 (386)
T ss_dssp             HHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHH
T ss_pred             HHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhh
Confidence            35667778888888888776  2   23446677788888888888875    55677788889999999999998865 


Q ss_pred             ---ccccC--CCCCCCCEEEccCCcccc----cchhhh-hcCCCCCEEEcccCCCccccc--hhh-hcCCCCCEEEccC
Q 004747          436 ---IPLTL--AGLKSLEIVDFSSNNLSG----SLNDAI-TKWTNLKYFSIARNKLSGNLP--NWL-FSFQAIQMMDFST  501 (732)
Q Consensus       436 ---~p~~~--~~l~~L~~L~Ls~N~l~~----~~~~~~-~~l~~L~~L~L~~N~l~~~~p--~~~-~~~~~L~~L~ls~  501 (732)
                         ++..+  ..+++|++|++++|.+++    .+|..+ .++++|++|++++|++++..+  ..+ ..++.++.+++..
T Consensus       261 ~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~~~~~~l~~  339 (386)
T 2ca6_A          261 AAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDE  339 (386)
T ss_dssp             HHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSHHHHHHHHHHHHHTCCEECC
T ss_pred             HHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchhHHHHHHHHhhhcCcchhhh
Confidence               45555  348999999999999997    477777 668999999999999987664  222 2244444444433

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.86  E-value=1.7e-21  Score=194.42  Aligned_cols=177  Identities=19%  Similarity=0.236  Sum_probs=91.8

Q ss_pred             cccCCCCCcEEEcccCc-eeeeccccCCCCCCCCEEEccC-CcccccchhhhhcCCCCCEEEcccCCCccccchhhhcCC
Q 004747          415 ELDALDSLKILDISNNQ-ISGEIPLTLAGLKSLEIVDFSS-NNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQ  492 (732)
Q Consensus       415 ~~~~l~~L~~L~L~~n~-l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~  492 (732)
                      .+..+++|++|++++|+ +++..+..|.++++|++|++++ |++++..+..|..+++|++|++++|++++ +|. +..++
T Consensus        50 ~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~  127 (239)
T 2xwt_C           50 AFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVY  127 (239)
T ss_dssp             TTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCC
T ss_pred             HccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-ccccc
Confidence            34444555555555553 4433333445555555555554 55554444444555555555555555543 333 44444


Q ss_pred             CCC---EEEccCC-cCcccCCcccccCccccCcCCCCCCCCCCcccCCCceeEEeEEEeecCCchhhhhhcccce-EEEc
Q 004747          493 AIQ---MMDFSTN-KFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAV-GMDL  567 (732)
Q Consensus       493 ~L~---~L~ls~N-~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~-~LdL  567 (732)
                      +|+   +|++++| .+++ +|...|..                                           ++.|+ .|++
T Consensus       128 ~L~~L~~L~l~~N~~l~~-i~~~~~~~-------------------------------------------l~~L~~~L~l  163 (239)
T 2xwt_C          128 STDIFFILEITDNPYMTS-IPVNAFQG-------------------------------------------LCNETLTLKL  163 (239)
T ss_dssp             BCCSEEEEEEESCTTCCE-ECTTTTTT-------------------------------------------TBSSEEEEEC
T ss_pred             ccccccEEECCCCcchhh-cCcccccc-------------------------------------------hhcceeEEEc
Confidence            444   5555555 4432 22221111                                           44555 6666


Q ss_pred             cCCcccccCCcccccccCCceeeccccc-ceecCCc-ccCc-cCCcEEeCCCCcCcccCCcCCCCCCCCCEEEcccC
Q 004747          568 SDNLLHGTIPKGLFQLQGLEYLNLSFNF-LDGQVPG-LYRL-RSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYN  641 (732)
Q Consensus       568 s~N~l~g~ip~~l~~l~~L~~L~Ls~N~-l~~~ip~-l~~l-~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N  641 (732)
                      ++|+++ .+|......++|++|++++|+ +++..+. +..+ ++|+.||+++|++++. |..  .+++|+.|+++++
T Consensus       164 ~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l-~~~--~~~~L~~L~l~~~  236 (239)
T 2xwt_C          164 YNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTAL-PSK--GLEHLKELIARNT  236 (239)
T ss_dssp             CSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCC-CCT--TCTTCSEEECTTC
T ss_pred             CCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccC-Chh--HhccCceeeccCc
Confidence            666665 455444444566666666663 6644444 5566 6677777777776643 322  4556666666654

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.86  E-value=3.2e-21  Score=192.34  Aligned_cols=196  Identities=19%  Similarity=0.160  Sum_probs=125.8

Q ss_pred             CCCEEeccCccCCCccccccCCCCCCCEEEccCCc-CccccCccccCCcCcceeecccccccccCcccccCCCCCcEEEc
Q 004747          349 SLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNM-LSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDI  427 (732)
Q Consensus       349 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~-l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L  427 (732)
                      +|++|++++|++++..+..|.++++|++|++++|+ ++                        +..+..|..+++|++|++
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~------------------------~i~~~~f~~l~~L~~L~l   87 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ------------------------QLESHSFYNLSKVTHIEI   87 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCC------------------------EECTTTEESCTTCCEEEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcc------------------------eeCHhHcCCCcCCcEEEC
Confidence            55566666666554444455555555555555554 44                        333334556666666666


Q ss_pred             cc-CceeeeccccCCCCCCCCEEEccCCcccccchhhhhcCCCCC---EEEcccC-CCccccchhhhcCCCCC-EEEccC
Q 004747          428 SN-NQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLK---YFSIARN-KLSGNLPNWLFSFQAIQ-MMDFST  501 (732)
Q Consensus       428 ~~-n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~---~L~L~~N-~l~~~~p~~~~~~~~L~-~L~ls~  501 (732)
                      ++ |.+++..+..|.++++|++|++++|++++ +|. +..+++|+   +|++++| .+++..+..+..+++|+ .|++++
T Consensus        88 ~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~  165 (239)
T 2xwt_C           88 RNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYN  165 (239)
T ss_dssp             EEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCS
T ss_pred             CCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCC
Confidence            66 66665555566666667777777666664 443 55666666   7777777 66655555677777777 777777


Q ss_pred             CcCcccCCcccccCccccCcCCCCCCCCCCcccCCCceeEEeEEEeecCCchhhhhhcccceEEEccCCc-ccccCCccc
Q 004747          502 NKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVGMDLSDNL-LHGTIPKGL  580 (732)
Q Consensus       502 N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~-l~g~ip~~l  580 (732)
                      |+++ .+|...|.                                            .++|+.|++++|+ +++..+..+
T Consensus       166 n~l~-~i~~~~~~--------------------------------------------~~~L~~L~L~~n~~l~~i~~~~~  200 (239)
T 2xwt_C          166 NGFT-SVQGYAFN--------------------------------------------GTKLDAVYLNKNKYLTVIDKDAF  200 (239)
T ss_dssp             CCCC-EECTTTTT--------------------------------------------TCEEEEEECTTCTTCCEECTTTT
T ss_pred             CCCc-ccCHhhcC--------------------------------------------CCCCCEEEcCCCCCcccCCHHHh
Confidence            7776 44443322                                            2457788888884 875556667


Q ss_pred             ccc-cCCceeecccccceecCCcccCccCCcEEeCCCC
Q 004747          581 FQL-QGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHN  617 (732)
Q Consensus       581 ~~l-~~L~~L~Ls~N~l~~~ip~l~~l~~L~~LdLs~N  617 (732)
                      ..+ ++|++|++++|++++ +|.- .+++|+.|+++++
T Consensus       201 ~~l~~~L~~L~l~~N~l~~-l~~~-~~~~L~~L~l~~~  236 (239)
T 2xwt_C          201 GGVYSGPSLLDVSQTSVTA-LPSK-GLEHLKELIARNT  236 (239)
T ss_dssp             TTCSBCCSEEECTTCCCCC-CCCT-TCTTCSEEECTTC
T ss_pred             hccccCCcEEECCCCcccc-CChh-HhccCceeeccCc
Confidence            778 888888888888874 4432 5678888888876

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.85  E-value=2.1e-20  Score=187.90  Aligned_cols=179  Identities=22%  Similarity=0.170  Sum_probs=107.7

Q ss_pred             ccEEeCCCCcccCCCcccccCCCCCCEEeccCccCCCccccccCCCCCCCEEEccCCcCccccCccccCCcCcceeeccc
Q 004747          326 LVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNN  405 (732)
Q Consensus       326 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~  405 (732)
                      .+.++++++.++ .+|..+.  ++++.|++++|.+++..+..+.++++|++|++++|.+++..+..+..+++|+.|++++
T Consensus        16 ~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~   92 (251)
T 3m19_A           16 KKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN   92 (251)
T ss_dssp             GTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred             CeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence            444555555554 3443332  3455555555555544444455555555555555555554444455555555555555


Q ss_pred             ccccccCcccccCCCCCcEEEcccCceeeeccccCCCCCCCCEEEccCCcccccchhhhhcCCCCCEEEcccCCCccccc
Q 004747          406 NNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLP  485 (732)
Q Consensus       406 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p  485 (732)
                      |.+++..+..+..+++|++|++++|++++..+..|..+++|++|++++|++++..+..+..+++|++|++++|++++..+
T Consensus        93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  172 (251)
T 3m19_A           93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH  172 (251)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             CcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCH
Confidence            55555555556666677777777777765555556667777777777777776555566667777777777777776556


Q ss_pred             hhhhcCCCCCEEEccCCcCccc
Q 004747          486 NWLFSFQAIQMMDFSTNKFMGF  507 (732)
Q Consensus       486 ~~~~~~~~L~~L~ls~N~l~~~  507 (732)
                      ..+..+++|+.|++++|++.+.
T Consensus       173 ~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          173 GAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             TTTTTCTTCCEEECCSCCBCTT
T ss_pred             HHHhCCCCCCEEEeeCCceeCC
Confidence            6666777777777777777654

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.85  E-value=8.8e-21  Score=196.57  Aligned_cols=173  Identities=19%  Similarity=0.334  Sum_probs=121.4

Q ss_pred             ccCCCCCcEEEcccCceeeeccccCCCCCCCCEEEccCCcccccchhhhhcCCCCCEEEcccCCCccccchhhhcCCCCC
Q 004747          416 LDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQ  495 (732)
Q Consensus       416 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~  495 (732)
                      +..+++|++|++++|.+++..+  +..+++|++|++++|++++. + .+..+++|++|++++|++++ ++. +..+++|+
T Consensus        59 ~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~  132 (308)
T 1h6u_A           59 VQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV-S-AIAGLQSIKTLDLTSTQITD-VTP-LAGLSNLQ  132 (308)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC-G-GGTTCTTCCEEECTTSCCCC-CGG-GTTCTTCC
T ss_pred             hhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc-h-hhcCCCCCCEEECCCCCCCC-chh-hcCCCCCC
Confidence            4556666666666666664333  66666777777777766643 2 46666777777777777664 332 66677777


Q ss_pred             EEEccCCcCcccCCcccccCccccCcCCCCCCCCCCcccCCCceeEEeEEEeecCCchhhhhhcccceEEEccCCccccc
Q 004747          496 MMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGT  575 (732)
Q Consensus       496 ~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~  575 (732)
                      .|++++|.+++..+   +                                           ..+++|+.|++++|++++ 
T Consensus       133 ~L~l~~n~l~~~~~---l-------------------------------------------~~l~~L~~L~l~~n~l~~-  165 (308)
T 1h6u_A          133 VLYLDLNQITNISP---L-------------------------------------------AGLTNLQYLSIGNAQVSD-  165 (308)
T ss_dssp             EEECCSSCCCCCGG---G-------------------------------------------GGCTTCCEEECCSSCCCC-
T ss_pred             EEECCCCccCcCcc---c-------------------------------------------cCCCCccEEEccCCcCCC-
Confidence            77777777654322   1                                           126677788888888874 


Q ss_pred             CCcccccccCCceeecccccceecCCcccCccCCcEEeCCCCcCcccCCcCCCCCCCCCEEEcccCccee
Q 004747          576 IPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSG  645 (732)
Q Consensus       576 ip~~l~~l~~L~~L~Ls~N~l~~~ip~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g  645 (732)
                      ++. +..+++|+.|++++|++++ ++.+..+++|++|+|++|++++..|  +..+++|++|++++|++++
T Consensus       166 ~~~-l~~l~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          166 LTP-LANLSKLTTLKADDNKISD-ISPLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             CGG-GTTCTTCCEEECCSSCCCC-CGGGGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred             Chh-hcCCCCCCEEECCCCccCc-ChhhcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence            444 7788888888888888875 4447788899999999999886653  7888899999999999876

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.84  E-value=1.6e-20  Score=198.60  Aligned_cols=183  Identities=17%  Similarity=0.147  Sum_probs=94.8

Q ss_pred             cEEeCCCCcccCCCcccccCCCCCCEEeccCccCCCccccccCCCCCCCEEEccCCcCccccCc-cccCCcCcce-eecc
Q 004747          327 VLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPL-NIVGCFQLLA-LIVN  404 (732)
Q Consensus       327 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~-~~~~~~~L~~-L~l~  404 (732)
                      ++++.++++++ .+|..+  .+++++|+|++|+++...+..|.++++|++|+|++|++.+.+|. .|.+++++.+ +.+.
T Consensus        12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~   88 (350)
T 4ay9_X           12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   88 (350)
T ss_dssp             TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred             CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence            34555555555 455444  24566666666666533334566666666666666665544442 3444444443 3334


Q ss_pred             cccccccCcccccCCCCCcEEEcccCceeeeccccCCCCCCCCEEEccC-CcccccchhhhhcCC-CCCEEEcccCCCcc
Q 004747          405 NNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSS-NNLSGSLNDAITKWT-NLKYFSIARNKLSG  482 (732)
Q Consensus       405 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~-~L~~L~L~~N~l~~  482 (732)
                      .|++....+..|..+++|++|++++|++.+..+..+....++..+++.+ +++....+..|..+. .++.|++++|+++ 
T Consensus        89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-  167 (350)
T 4ay9_X           89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-  167 (350)
T ss_dssp             ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-
T ss_pred             CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc-
Confidence            4555555555555666666666666666544444444445555566544 344433333444432 4556666666665 


Q ss_pred             ccchhhhcCCCCCEEEccCCcCcccCCcccc
Q 004747          483 NLPNWLFSFQAIQMMDFSTNKFMGFIPDGNF  513 (732)
Q Consensus       483 ~~p~~~~~~~~L~~L~ls~N~l~~~~p~~~~  513 (732)
                      .+|.......+++.+++++++..+.+|...|
T Consensus       168 ~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f  198 (350)
T 4ay9_X          168 EIHNSAFNGTQLDELNLSDNNNLEELPNDVF  198 (350)
T ss_dssp             EECTTSSTTEEEEEEECTTCTTCCCCCTTTT
T ss_pred             CCChhhccccchhHHhhccCCcccCCCHHHh
Confidence            3444444445566666655444444554443

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.84  E-value=2.6e-20  Score=193.06  Aligned_cols=208  Identities=23%  Similarity=0.345  Sum_probs=113.8

Q ss_pred             eeeCCCCccccccchhhhccCCCCEEEeccCCCCCcCccccccCcCCcEEEccCCCCCCCCchhhhhcCCCCCccEEeCC
Q 004747          253 VLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLS  332 (732)
Q Consensus       253 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~L~~L~Ls  332 (732)
                      .+.+..+.+.+.++  ...+++|++|++++|.++. ++ .+..+++|++|++++|.+++. +. +..++   +|++|+++
T Consensus        23 ~~~l~~~~~~~~~~--~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~-~~-~~~l~---~L~~L~L~   93 (308)
T 1h6u_A           23 KIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDL-AP-LKNLT---KITELELS   93 (308)
T ss_dssp             HHHTTCSSTTSEEC--HHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCC---SCCEEECC
T ss_pred             HHHhCCCCcCceec--HHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCC-hh-HccCC---CCCEEEcc
Confidence            34455555543322  4456677777777776653 22 466666666666666666632 22 33333   66666666


Q ss_pred             CCcccCCCcccccCCCCCCEEeccCccCCCccccccCCCCCCCEEEccCCcCccccCccccCCcCcceeecccccccccC
Q 004747          333 HNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEI  412 (732)
Q Consensus       333 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~  412 (732)
                      +|.+++ ++ .+..+++|++|++++|.+++. +. +..+++|++|++++|.+++..+                       
T Consensus        94 ~n~l~~-~~-~~~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~-----------------------  146 (308)
T 1h6u_A           94 GNPLKN-VS-AIAGLQSIKTLDLTSTQITDV-TP-LAGLSNLQVLYLDLNQITNISP-----------------------  146 (308)
T ss_dssp             SCCCSC-CG-GGTTCTTCCEEECTTSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG-----------------------
T ss_pred             CCcCCC-ch-hhcCCCCCCEEECCCCCCCCc-hh-hcCCCCCCEEECCCCccCcCcc-----------------------
Confidence            666653 32 456666666666666666542 22 5666666666666666553221                       


Q ss_pred             cccccCCCCCcEEEcccCceeeeccccCCCCCCCCEEEccCCcccccchhhhhcCCCCCEEEcccCCCccccchhhhcCC
Q 004747          413 QPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQ  492 (732)
Q Consensus       413 ~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~  492 (732)
                         +..+++|+.|++++|.+++..+  +..+++|++|++++|++++..+  +..+++|++|++++|++++..+  +..++
T Consensus       147 ---l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~  217 (308)
T 1h6u_A          147 ---LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTS  217 (308)
T ss_dssp             ---GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCT
T ss_pred             ---ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCC
Confidence               3344555555555555553222  4555555555555555554322  4555555666666665553332  45555


Q ss_pred             CCCEEEccCCcCc
Q 004747          493 AIQMMDFSTNKFM  505 (732)
Q Consensus       493 ~L~~L~ls~N~l~  505 (732)
                      +|+.|++++|+++
T Consensus       218 ~L~~L~l~~N~i~  230 (308)
T 1h6u_A          218 NLFIVTLTNQTIT  230 (308)
T ss_dssp             TCCEEEEEEEEEE
T ss_pred             CCCEEEccCCeee
Confidence            6666666666554

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.82  E-value=3e-20  Score=206.63  Aligned_cols=198  Identities=22%  Similarity=0.296  Sum_probs=133.7

Q ss_pred             Cccce-eecCCCCcEEEEEcCCCCCcccccccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEECCCCCCCCCCCcc
Q 004747           71 NWTGV-ACNFQTGHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDA  149 (732)
Q Consensus        71 ~w~gv-~c~~~~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~  149 (732)
                      .|.++ .|.  .++++.|+++++++++ +|..+.  ++|++|+|++|.++ .+|   ..+++|++|++++|.|++ +|. 
T Consensus        49 ~~~~l~~C~--~~~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-  117 (571)
T 3cvr_A           49 AVSLLKECL--INQFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-  117 (571)
T ss_dssp             HHHHHHHHH--HTTCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-
T ss_pred             hhhhccccc--cCCccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-
Confidence            69998 675  3578889999988886 666553  78888888888888 566   457888888888888886 565 


Q ss_pred             ccCCCCCCEEeCCCCCCCCCcCCchhhhcccCCcEEEeeCcccccccCcccCCCCCCCEEEeecccCCCccccccccccE
Q 004747          150 IMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLV  229 (732)
Q Consensus       150 ~~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~L~~  229 (732)
                      +.+  +|++|+|++| .+++ +|.   .+ ++|++|++++|.+++ +|.   .+++|++|++++|.+++           
T Consensus       118 l~~--~L~~L~Ls~N-~l~~-lp~---~l-~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-----------  174 (571)
T 3cvr_A          118 LPA--SLKHLDVDNN-QLTM-LPE---LP-ALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-----------  174 (571)
T ss_dssp             CCT--TCCEEECCSS-CCSC-CCC---CC-TTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-----------
T ss_pred             hhc--CCCEEECCCC-cCCC-CCC---cC-ccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-----------
Confidence            554  7788888877 3433 444   23 667777777777764 444   45666666666666654           


Q ss_pred             EECCCCcCccccCchhhcccccCeeeCCCCccccccchhhhccCCC-------CEEEeccCCCCCcCccccccCcCCcEE
Q 004747          230 LNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQAL-------THLNLSHNHLNYEISPRLVFFEKLLLL  302 (732)
Q Consensus       230 L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L-------~~L~L~~n~l~~~~~~~l~~l~~L~~L  302 (732)
                                 +|. +.  ++|++|++++|.++ .+|. +..  +|       +.|++++|.++ .+|..+..+++|+.|
T Consensus       175 -----------lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L  235 (571)
T 3cvr_A          175 -----------LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTI  235 (571)
T ss_dssp             -----------CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEE
T ss_pred             -----------cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEE
Confidence                       333 22  45555555555555 3343 332  44       77788888777 467767778888888


Q ss_pred             EccCCCCCCCCchhhhhcC
Q 004747          303 DLSFNDLSGPLPSKIAQTT  321 (732)
Q Consensus       303 ~Ls~n~l~~~~p~~~~~l~  321 (732)
                      ++++|.+++.+|..+..+.
T Consensus       236 ~L~~N~l~~~~p~~l~~l~  254 (571)
T 3cvr_A          236 ILEDNPLSSRIRESLSQQT  254 (571)
T ss_dssp             ECCSSSCCHHHHHHHHHHH
T ss_pred             EeeCCcCCCcCHHHHHHhh
Confidence            8888888877777776654

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.81  E-value=1.1e-19  Score=192.17  Aligned_cols=241  Identities=17%  Similarity=0.177  Sum_probs=185.9

Q ss_pred             CEEeccCccCCCccccccCCCCCCCEEEccCCcCccccCccccCCcCcceeecccccccccCc-ccccCCCCCcE-EEcc
Q 004747          351 QALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQ-PELDALDSLKI-LDIS  428 (732)
Q Consensus       351 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~-L~L~  428 (732)
                      ++++.++++++ .+|..+  .+++++|+|++|+++...+..|.++++|++|++++|++.+.++ ..|.++++++. +.++
T Consensus        12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~   88 (350)
T 4ay9_X           12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   88 (350)
T ss_dssp             TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred             CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence            67888999988 677766  3689999999999996555678999999999999999877655 46788888765 6677


Q ss_pred             cCceeeeccccCCCCCCCCEEEccCCcccccchhhhhcCCCCCEEEccc-CCCccccchhhhcCC-CCCEEEccCCcCcc
Q 004747          429 NNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIAR-NKLSGNLPNWLFSFQ-AIQMMDFSTNKFMG  506 (732)
Q Consensus       429 ~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~p~~~~~~~-~L~~L~ls~N~l~~  506 (732)
                      .|+++...|..|..+++|++|++++|++....+..+....++..+++.+ +++....+..+..+. .++.|++++|+++.
T Consensus        89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~  168 (350)
T 4ay9_X           89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE  168 (350)
T ss_dssp             ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred             CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC
Confidence            8999988888999999999999999999977776777778888999876 456644455566654 68899999999973


Q ss_pred             cCCcccccCccccCcCCCCCCCCCCcccCCCceeEEeEEEeecCCchhhhhhcccceEEEccC-CcccccCCc-cccccc
Q 004747          507 FIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVGMDLSD-NLLHGTIPK-GLFQLQ  584 (732)
Q Consensus       507 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~-N~l~g~ip~-~l~~l~  584 (732)
                       +|...|.                                            ...++.+++++ |.++ .+|. .+..++
T Consensus       169 -i~~~~f~--------------------------------------------~~~L~~l~l~~~n~l~-~i~~~~f~~l~  202 (350)
T 4ay9_X          169 -IHNSAFN--------------------------------------------GTQLDELNLSDNNNLE-ELPNDVFHGAS  202 (350)
T ss_dssp             -ECTTSST--------------------------------------------TEEEEEEECTTCTTCC-CCCTTTTTTEE
T ss_pred             -CChhhcc--------------------------------------------ccchhHHhhccCCccc-CCCHHHhccCc
Confidence             4544432                                            34678899985 5565 6775 468899


Q ss_pred             CCceeecccccceecCCcccCccCCcEEeCCCCcCcccCCcCCCCCCCCCEEEcccCcc
Q 004747          585 GLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSF  643 (732)
Q Consensus       585 ~L~~L~Ls~N~l~~~ip~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l  643 (732)
                      +|++|||++|+|+. +|. ..+.+|+.|.+.++.--..+| .+.++++|+.++++++..
T Consensus       203 ~L~~LdLs~N~l~~-lp~-~~~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~~~  258 (350)
T 4ay9_X          203 GPVILDISRTRIHS-LPS-YGLENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYPSH  258 (350)
T ss_dssp             CCSEEECTTSCCCC-CCS-SSCTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCHHH
T ss_pred             ccchhhcCCCCcCc-cCh-hhhccchHhhhccCCCcCcCC-CchhCcChhhCcCCCCcc
Confidence            99999999999984 444 224556666665554444677 478899999999988754

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.81  E-value=1.9e-19  Score=175.33  Aligned_cols=151  Identities=21%  Similarity=0.200  Sum_probs=78.0

Q ss_pred             cEEeCCCCcccCCCcccccCCCCCCEEeccCccCCCccccccCCCCCCCEEEccCCcCccccCccccCCcCcceeecccc
Q 004747          327 VLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNN  406 (732)
Q Consensus       327 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n  406 (732)
                      +.++++++.++ .+|..+  .++|++|++++|.+++..+..+..+++|++|++++|.+++..                  
T Consensus        10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~------------------   68 (208)
T 2o6s_A           10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLP------------------   68 (208)
T ss_dssp             TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCC------------------
T ss_pred             CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccC------------------
Confidence            34555555555 344332  235555666655555444444555555555555555554322                  


Q ss_pred             cccccCcccccCCCCCcEEEcccCceeeeccccCCCCCCCCEEEccCCcccccchhhhhcCCCCCEEEcccCCCccccch
Q 004747          407 NLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPN  486 (732)
Q Consensus       407 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~  486 (732)
                            +..+..+++|++|++++|.+++..+..+.++++|++|++++|++++..+..+..+++|++|++++|++++..+.
T Consensus        69 ------~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~  142 (208)
T 2o6s_A           69 ------NGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDG  142 (208)
T ss_dssp             ------TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred             ------hhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHH
Confidence                  22334455555555555555544444455555555555555555544444455555555555555555544444


Q ss_pred             hhhcCCCCCEEEccCCcC
Q 004747          487 WLFSFQAIQMMDFSTNKF  504 (732)
Q Consensus       487 ~~~~~~~L~~L~ls~N~l  504 (732)
                      .+..+++|+.|++++|.+
T Consensus       143 ~~~~l~~L~~L~l~~N~~  160 (208)
T 2o6s_A          143 VFDRLTSLQYIWLHDNPW  160 (208)
T ss_dssp             TTTTCTTCCEEECCSCCB
T ss_pred             HhccCCCccEEEecCCCe
Confidence            445555555555555544

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.79  E-value=7.7e-19  Score=170.99  Aligned_cols=89  Identities=25%  Similarity=0.160  Sum_probs=43.9

Q ss_pred             CccEEeCCCCcccCCCcccccCCCCCCEEeccCccCCCccccccCCCCCCCEEEccCCcCccccCccccCCcCcceeecc
Q 004747          325 GLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVN  404 (732)
Q Consensus       325 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~  404 (732)
                      +|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+       .++.|+.|++.
T Consensus       101 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~  173 (208)
T 2o6s_A          101 QLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEW  173 (208)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHH
T ss_pred             CCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHH
Confidence            44444444444443333334445555555555555554444344555555555555554432       23345555555


Q ss_pred             cccccccCcccccCCC
Q 004747          405 NNNLSGEIQPELDALD  420 (732)
Q Consensus       405 ~n~l~~~~~~~~~~l~  420 (732)
                      .|+++|.+|..++.++
T Consensus       174 ~n~~~g~ip~~~~~l~  189 (208)
T 2o6s_A          174 INKHSGVVRNSAGSVA  189 (208)
T ss_dssp             HHHCTTTBBCTTSSBC
T ss_pred             HHhCCceeeccCcccc
Confidence            5555555555554443

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.79  E-value=1.1e-18  Score=194.06  Aligned_cols=189  Identities=21%  Similarity=0.313  Sum_probs=131.8

Q ss_pred             CCCEEECCCCCCCCcccccccCCCCCCEEECCCCCCCCCCCccccCCCCCCEEeCCCCCCCCCcCCchhhhcccCCcEEE
Q 004747          107 FLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLD  186 (732)
Q Consensus       107 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~~L~~L~  186 (732)
                      +|++|++++|.+++ +|..+.  ++|++|+|++|.|+ .+|   ..+++|++|++++| .+++ +|. +.   .+|++|+
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N-~l~~-ip~-l~---~~L~~L~  126 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLEYLDACDN-RLST-LPE-LP---ASLKHLD  126 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSS-CCSC-CCC-CC---TTCCEEE
T ss_pred             CccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEEEccCC-CCCC-cch-hh---cCCCEEE
Confidence            67888888888775 565442  67888888888777 455   34566666666666 3333 443 22   2555555


Q ss_pred             eeCcccccccCcccCCCCCCCEEEeecccCCCccccccccccEEECCCCcCccccCchhhcccccCeeeCCCCccccccc
Q 004747          187 FSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIP  266 (732)
Q Consensus       187 Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~  266 (732)
                      +++|.+++ +|.   .+++                     |++|++++|.+++ +|.   .+++|++|++++|.+++ +|
T Consensus       127 Ls~N~l~~-lp~---~l~~---------------------L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp  176 (571)
T 3cvr_A          127 VDNNQLTM-LPE---LPAL---------------------LEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LP  176 (571)
T ss_dssp             CCSSCCSC-CCC---CCTT---------------------CCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CC
T ss_pred             CCCCcCCC-CCC---cCcc---------------------ccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cc
Confidence            55555553 333   3444                     5555555555554 444   46789999999999987 66


Q ss_pred             hhhhccCCCCEEEeccCCCCCcCccccccCcCC-------cEEEccCCCCCCCCchhhhhcCCCCCccEEeCCCCcccCC
Q 004747          267 TCIASLQALTHLNLSHNHLNYEISPRLVFFEKL-------LLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGE  339 (732)
Q Consensus       267 ~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L-------~~L~Ls~n~l~~~~p~~~~~l~~~~~L~~L~Ls~n~l~~~  339 (732)
                      . +.  ++|++|++++|.++ .+|. +..  +|       +.|++++|.++ .+|..+..++   +|+.|++++|.+++.
T Consensus       177 ~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~---~L~~L~L~~N~l~~~  245 (571)
T 3cvr_A          177 E-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLD---PTCTIILEDNPLSSR  245 (571)
T ss_dssp             C-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSC---TTEEEECCSSSCCHH
T ss_pred             h-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCC---CCCEEEeeCCcCCCc
Confidence            6 65  89999999999998 5666 544  77       99999999999 6888887766   899999999999998


Q ss_pred             CcccccCCCC
Q 004747          340 IPLKITELKS  349 (732)
Q Consensus       340 ~p~~l~~l~~  349 (732)
                      +|..+..++.
T Consensus       246 ~p~~l~~l~~  255 (571)
T 3cvr_A          246 IRESLSQQTA  255 (571)
T ss_dssp             HHHHHHHHHH
T ss_pred             CHHHHHHhhc
Confidence            8888776543

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.76  E-value=1.8e-18  Score=177.48  Aligned_cols=189  Identities=20%  Similarity=0.274  Sum_probs=141.6

Q ss_pred             ceeecccccccccCcccccCCCCCcEEEcccCceeeeccccCCCCCCCCEEEccCCcccccchhhhhcCCCCCEEEcccC
Q 004747          399 LALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARN  478 (732)
Q Consensus       399 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N  478 (732)
                      ..+.+..+.+.+..+  ...+++|+.|++++|.+.+. + .+..+++|++|++++|++++..+  +..+++|++|++++|
T Consensus        27 ~~~~l~~~~~~~~~~--~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n  100 (291)
T 1h6t_A           27 IKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDEN  100 (291)
T ss_dssp             HHHHTTCSCTTSEEC--HHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred             HHHHhcCCCcccccc--hhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCC
Confidence            334444554444322  34567788888888887743 3 36777888888888888876544  777888888888888


Q ss_pred             CCccccchhhhcCCCCCEEEccCCcCcccCCcccccCccccCcCCCCCCCCCCcccCCCceeEEeEEEeecCCchhhhhh
Q 004747          479 KLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQ  558 (732)
Q Consensus       479 ~l~~~~p~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  558 (732)
                      ++++ +| .+..+++|++|++++|++++. + .                                            ...
T Consensus       101 ~l~~-~~-~l~~l~~L~~L~L~~n~i~~~-~-~--------------------------------------------l~~  132 (291)
T 1h6t_A          101 KVKD-LS-SLKDLKKLKSLSLEHNGISDI-N-G--------------------------------------------LVH  132 (291)
T ss_dssp             CCCC-GG-GGTTCTTCCEEECTTSCCCCC-G-G--------------------------------------------GGG
T ss_pred             cCCC-Ch-hhccCCCCCEEECCCCcCCCC-h-h--------------------------------------------hcC
Confidence            8874 33 377888888888888887642 1 1                                            112


Q ss_pred             cccceEEEccCCcccccCCcccccccCCceeecccccceecCCcccCccCCcEEeCCCCcCcccCCcCCCCCCCCCEEEc
Q 004747          559 LFSAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNL  638 (732)
Q Consensus       559 l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~l  638 (732)
                      +++|+.|++++|++++ + ..+..+++|++|++++|++++..| +..+++|+.|++++|.+++. | .+..+++|+.|++
T Consensus       133 l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l  207 (291)
T 1h6t_A          133 LPQLESLYLGNNKITD-I-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLEL  207 (291)
T ss_dssp             CTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEE
T ss_pred             CCCCCEEEccCCcCCc-c-hhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEEC
Confidence            6778889999999885 3 578889999999999999986555 88899999999999999864 4 4888999999999


Q ss_pred             ccCcceee
Q 004747          639 SYNSFSGF  646 (732)
Q Consensus       639 s~N~l~g~  646 (732)
                      ++|+++..
T Consensus       208 ~~n~i~~~  215 (291)
T 1h6t_A          208 FSQECLNK  215 (291)
T ss_dssp             EEEEEECC
T ss_pred             cCCcccCC
Confidence            99998763

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.75  E-value=1.4e-17  Score=164.49  Aligned_cols=161  Identities=24%  Similarity=0.253  Sum_probs=121.6

Q ss_pred             CCCCCCCCCccceeecCCCCcEEEEEcCCCCCcccccccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEECCCCCC
Q 004747           63 SWVGSNCTNWTGVACNFQTGHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKF  142 (732)
Q Consensus        63 ~w~~~~~c~w~gv~c~~~~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l  142 (732)
                      .|.+...|+|.+|.|...            .+. .+|..+.  ++|++|+|++|.+++..|..|..+++|++|+|++|++
T Consensus        12 ~~~~~~~Cs~~~v~c~~~------------~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l   76 (229)
T 3e6j_A           12 ACPSQCSCSGTTVDCRSK------------RHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL   76 (229)
T ss_dssp             CCCTTCEEETTEEECTTS------------CCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             cCCCCCEEeCCEeEccCC------------CcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCC
Confidence            346778899999999631            122 3444333  7788888888888887788888888888888888888


Q ss_pred             CCCCCccccCCCCCCEEeCCCCCCCCCcCCchhhhcccCCcEEEeeCcccccccCcccCCCCCCCEEEeecccCCCcccc
Q 004747          143 VGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHD  222 (732)
Q Consensus       143 ~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~  222 (732)
                      ++..+..|..+++|++|+|++| .+++..+..+..+ ++|++|++++|.++ .+|..+..+++|++|+|++|++++..+.
T Consensus        77 ~~i~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~l-~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~  153 (229)
T 3e6j_A           77 GALPVGVFDSLTQLTVLDLGTN-QLTVLPSAVFDRL-VHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHG  153 (229)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTC-TTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTT
T ss_pred             CCcChhhcccCCCcCEEECCCC-cCCccChhHhCcc-hhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHH
Confidence            7666677788888888888888 5555555556667 78888888888888 6777888888888888888888876655


Q ss_pred             cc---ccccEEECCCCcCcccc
Q 004747          223 FY---QSLLVLNLGSNRFSGTL  241 (732)
Q Consensus       223 ~~---~~L~~L~L~~n~l~~~~  241 (732)
                      .+   .+|+.|++++|.+....
T Consensus       154 ~~~~l~~L~~L~l~~N~~~c~c  175 (229)
T 3e6j_A          154 AFDRLSSLTHAYLFGNPWDCEC  175 (229)
T ss_dssp             TTTTCTTCCEEECTTSCBCTTB
T ss_pred             HHhCCCCCCEEEeeCCCccCCc
Confidence            44   45888888888876543

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.74  E-value=5.3e-19  Score=204.03  Aligned_cols=226  Identities=21%  Similarity=0.183  Sum_probs=116.0

Q ss_pred             HHhHHHHHHHHhcCCCC-CCCCCCC--CCCCCCCccceeecCCCCcEEEEEcCCCCCcccccccccCCCCCCEEECCCCC
Q 004747           41 LEDKASLLLFKSLVQDP-TQKLSSW--VGSNCTNWTGVACNFQTGHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNA  117 (732)
Q Consensus        41 ~~~~~~l~~~k~~~~~~-~~~l~~w--~~~~~c~w~gv~c~~~~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~  117 (732)
                      ..++++|.++...+..+ ...-..|  .....+.|.++.++  ..++++|+|.++.+... +..+     ++.++|+.|.
T Consensus       131 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s--~~~~~~l~L~~n~~~~~-~~~~-----l~~l~Ls~~~  202 (727)
T 4b8c_D          131 DCTKQALMEMADTLTDSKTAKKQQPTGDSTPSGTATNSAVS--TPLTPKIELFANGKDEA-NQAL-----LQHKKLSQYS  202 (727)
T ss_dssp             -CCCHHHHHHHHHHHHHHTTC-----------------------------------------------------------
T ss_pred             ccchhhhhhhhhhcccccCcccCCCcCCCCccccCCCceec--CCccceEEeeCCCCCcc-hhhH-----hhcCccCccc
Confidence            35667888887665332 2233456  34456789888875  46899999998887753 3333     3344444444


Q ss_pred             CCC---------cccccccCCCCCCEEECCCCCCCCCCCccccCCCCCCEEeCCCCCCCCCcCCchhhhcccCCcEEEee
Q 004747          118 FTG---------RISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFS  188 (732)
Q Consensus       118 l~~---------~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~~L~~L~Ls  188 (732)
                      +.+         ..+..|..++.|++|+|++|.+. .+|..+.++++|++|+|++| .++ .+|..++.+ ++|++|+|+
T Consensus       203 i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N-~l~-~lp~~~~~l-~~L~~L~Ls  278 (727)
T 4b8c_D          203 IDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGN-SLT-ELPAEIKNL-SNLRVLDLS  278 (727)
T ss_dssp             -------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTS-CCS-CCCGGGGGG-TTCCEEECT
T ss_pred             ccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCC-cCc-ccChhhhCC-CCCCEEeCc
Confidence            332         34677888999999999999988 67777778999999999998 444 778888888 889999999


Q ss_pred             CcccccccCcccCCCCCCCEEEeecccCCCccccccccccEEECCCCcCccccCchhhcccccCeeeCCCCccccccchh
Q 004747          189 FNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTC  268 (732)
Q Consensus       189 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~  268 (732)
                      +|.++ .+|..++++++|++|+|++|.++                      .+|..++.+++|++|+|++|.+++.+|..
T Consensus       279 ~N~l~-~lp~~~~~l~~L~~L~L~~N~l~----------------------~lp~~~~~l~~L~~L~L~~N~l~~~~p~~  335 (727)
T 4b8c_D          279 HNRLT-SLPAELGSCFQLKYFYFFDNMVT----------------------TLPWEFGNLCNLQFLGVEGNPLEKQFLKI  335 (727)
T ss_dssp             TSCCS-SCCSSGGGGTTCSEEECCSSCCC----------------------CCCSSTTSCTTCCCEECTTSCCCSHHHHH
T ss_pred             CCcCC-ccChhhcCCCCCCEEECCCCCCC----------------------ccChhhhcCCCccEEeCCCCccCCCChHH
Confidence            99888 67888888888888888887765                      45555667777777777777777777766


Q ss_pred             hhccCC-CCEEEeccCCCCCcCccccccCcCCcEEEccCC
Q 004747          269 IASLQA-LTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFN  307 (732)
Q Consensus       269 l~~l~~-L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n  307 (732)
                      +..+.. +..+++++|.+++.+|..      |+.|+++.|
T Consensus       336 ~~~~~~~~~~l~l~~N~l~~~~p~~------l~~l~l~~n  369 (727)
T 4b8c_D          336 LTEKSVTGLIFYLRDNRPEIPLPHE------RRFIEINTD  369 (727)
T ss_dssp             HHHHHHHHHHHHHHHCCCCCCCCCC---------------
T ss_pred             HhhcchhhhHHhhccCcccCcCccc------cceeEeecc
Confidence            654322 223567777776666543      344555544

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.74  E-value=6.2e-18  Score=190.17  Aligned_cols=192  Identities=18%  Similarity=0.248  Sum_probs=150.7

Q ss_pred             CCCCEEeccCccCCCccccccCCCCCCCEEEccCCcCccccCccccCCcCcceeecccccccccCcccccCCCCCcEEEc
Q 004747          348 KSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDI  427 (732)
Q Consensus       348 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L  427 (732)
                      ..+..+.+..+.+.+..+  +..+++|+.|++++|.+.. ++ .+..+++|+.|++++|.+.+..+  +..+++|+.|+|
T Consensus        21 ~~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~L   94 (605)
T 1m9s_A           21 AETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFL   94 (605)
T ss_dssp             HHHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEEC
T ss_pred             HHHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEEC
Confidence            345566777777765443  4678889999999999874 34 57888999999999999887665  788899999999


Q ss_pred             ccCceeeeccccCCCCCCCCEEEccCCcccccchhhhhcCCCCCEEEcccCCCccccchhhhcCCCCCEEEccCCcCccc
Q 004747          428 SNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGF  507 (732)
Q Consensus       428 ~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~ls~N~l~~~  507 (732)
                      ++|.+.+ +| .+..+++|+.|+|++|.+++.  ..+..+++|+.|+|++|.+++.  ..+..+++|+.|+|++|.+.+.
T Consensus        95 s~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~  168 (605)
T 1m9s_A           95 DENKIKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI  168 (605)
T ss_dssp             CSSCCCC-CT-TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCC
T ss_pred             cCCCCCC-Ch-hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCc
Confidence            9998885 33 688889999999999998863  3578888999999999988864  5678888899999998888765


Q ss_pred             CCcccccCccccCcCCCCCCCCCCcccCCCceeEEeEEEeecCCchhhhhhcccceEEEccCCcccccCCcccccccCCc
Q 004747          508 IPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGTIPKGLFQLQGLE  587 (732)
Q Consensus       508 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~  587 (732)
                      .|   +.                                           .+++|+.|+|++|++++ +| .+..+++|+
T Consensus       169 ~~---l~-------------------------------------------~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~  200 (605)
T 1m9s_A          169 VP---LA-------------------------------------------GLTKLQNLYLSKNHISD-LR-ALAGLKNLD  200 (605)
T ss_dssp             GG---GT-------------------------------------------TCTTCCEEECCSSCCCB-CG-GGTTCTTCS
T ss_pred             hh---hc-------------------------------------------cCCCCCEEECcCCCCCC-Ch-HHccCCCCC
Confidence            44   11                                           16778888888888885 44 588888888


Q ss_pred             eeecccccceec
Q 004747          588 YLNLSFNFLDGQ  599 (732)
Q Consensus       588 ~L~Ls~N~l~~~  599 (732)
                      .|+|++|.+++.
T Consensus       201 ~L~L~~N~l~~~  212 (605)
T 1m9s_A          201 VLELFSQECLNK  212 (605)
T ss_dssp             EEECCSEEEECC
T ss_pred             EEEccCCcCcCC
Confidence            888888888754

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.74  E-value=1.6e-17  Score=170.41  Aligned_cols=188  Identities=23%  Similarity=0.323  Sum_probs=106.0

Q ss_pred             cCeeeCCCCccccccchhhhccCCCCEEEeccCCCCCcCccccccCcCCcEEEccCCCCCCCCchhhhhcCCCCCccEEe
Q 004747          251 LTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLD  330 (732)
Q Consensus       251 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~L~~L~  330 (732)
                      +..+.+..+.+.+..+  +..+++|++|++++|.++..  +.+..+++|++|++++|++++..+  +..+.   +|++|+
T Consensus        26 ~~~~~l~~~~~~~~~~--~~~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~---~L~~L~   96 (291)
T 1h6t_A           26 TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLK---NLGWLF   96 (291)
T ss_dssp             HHHHHTTCSCTTSEEC--HHHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCT---TCCEEE
T ss_pred             HHHHHhcCCCcccccc--hhhcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc--cccCC---CCCEEE
Confidence            4444555555554322  34566777777777766533  235666666666666666664322  33333   566666


Q ss_pred             CCCCcccCCCcccccCCCCCCEEeccCccCCCccccccCCCCCCCEEEccCCcCccccCccccCCcCcceeecccccccc
Q 004747          331 LSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSG  410 (732)
Q Consensus       331 Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~  410 (732)
                      +++|.+++ +| .+..+++|++|++++|.+++.  ..+..+++|+.|++++|.+++.                       
T Consensus        97 l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~-----------------------  149 (291)
T 1h6t_A           97 LDENKVKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI-----------------------  149 (291)
T ss_dssp             CCSSCCCC-GG-GGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC-----------------------
T ss_pred             CCCCcCCC-Ch-hhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc-----------------------
Confidence            66666653 22 355566666666666666542  2355556666666666655532                       


Q ss_pred             cCcccccCCCCCcEEEcccCceeeeccccCCCCCCCCEEEccCCcccccchhhhhcCCCCCEEEcccCCCc
Q 004747          411 EIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLS  481 (732)
Q Consensus       411 ~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  481 (732)
                         ..+..+++|+.|++++|.+++..+  +..+++|++|++++|.+++. + .+..+++|+.|++++|++.
T Consensus       150 ---~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~  213 (291)
T 1h6t_A          150 ---TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECL  213 (291)
T ss_dssp             ---GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEE
T ss_pred             ---hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCccc
Confidence               234455566666666666654433  55666666666666666543 2 2556666666666666665

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.73  E-value=2.5e-17  Score=161.44  Aligned_cols=151  Identities=21%  Similarity=0.269  Sum_probs=70.7

Q ss_pred             EEeCCCCcccCCCcccccCCCCCCEEeccCccCCCccc-cccCCCCCCCEEEccCCcCccccCccccCCcCcceeecccc
Q 004747          328 LLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIP-ARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNN  406 (732)
Q Consensus       328 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n  406 (732)
                      .+++++|.++ .+|..+.  +.+++|++++|.+++..+ ..|..+++|++|++++|.+++..+..|.++++|+.|++++|
T Consensus        15 ~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N   91 (220)
T 2v70_A           15 TVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN   91 (220)
T ss_dssp             EEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             EeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence            4555555554 3444332  234555555555554322 23455555555555555555444434444444444444444


Q ss_pred             cccccCcccccCCCCCcEEEcccCceeeeccccCCCCCCCCEEEccCCcccccchhhhhcCCCCCEEEcccCCCc
Q 004747          407 NLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLS  481 (732)
Q Consensus       407 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  481 (732)
                      .+++..+..+..+++|++|++++|++++..|..|.++++|++|++++|++++..|..+..+++|++|++++|++.
T Consensus        92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  166 (220)
T 2v70_A           92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN  166 (220)
T ss_dssp             CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred             ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence            444433334444444444444444444444444444444444444444444444444444444444444444443

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.73  E-value=2.5e-17  Score=161.54  Aligned_cols=152  Identities=20%  Similarity=0.289  Sum_probs=76.7

Q ss_pred             cEEeCCCCcccCCCcccccCCCCCCEEeccCccCCCccccccCCCCCCCEEEccCCcCccccCccccCCcCcceeecccc
Q 004747          327 VLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNN  406 (732)
Q Consensus       327 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n  406 (732)
                      +.++++++.++ .+|..+.  ++++.|++++|.+++..+..|..+++|++|++++|.+++..|..|.++++|+.|++++|
T Consensus        14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N   90 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN   90 (220)
T ss_dssp             TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence            34555555555 3444332  45556666666555444445555556666666666555444444444444444444444


Q ss_pred             cccccCcccccCCCCCcEEEcccCceeeeccccCCCCCCCCEEEccCCcccccchhhhhcCCCCCEEEcccCCCc
Q 004747          407 NLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLS  481 (732)
Q Consensus       407 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  481 (732)
                      .++...+..|..+++|++|++++|++++..|..|..+++|++|++++|++++..+..+..+++|++|++++|++.
T Consensus        91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B           91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence            444333333444555555555555555444444555555555555555555444444444455555555555443

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.73  E-value=2.1e-17  Score=175.32  Aligned_cols=175  Identities=23%  Similarity=0.173  Sum_probs=99.5

Q ss_pred             EEeCCCCcccCCCcccccCCCCCCEEeccCccCCCccccccC-CCCCCCEEEccCCcCccccCccccCCcCcceeecccc
Q 004747          328 LLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIG-NLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNN  406 (732)
Q Consensus       328 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n  406 (732)
                      .++++++.++ .+|..+.  +.++.|+|++|++++..+..+. ++++|++|++++|.+++..+..|..+++|+.|++++|
T Consensus        22 ~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N   98 (361)
T 2xot_A           22 ILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN   98 (361)
T ss_dssp             EEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             EEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence            3444444444 2333322  2344555555555443333343 4555555555555555444444555555555555555


Q ss_pred             cccccCcccccCCCCCcEEEcccCceeeeccccCCCCCCCCEEEccCCcccccchhhh---hcCCCCCEEEcccCCCccc
Q 004747          407 NLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAI---TKWTNLKYFSIARNKLSGN  483 (732)
Q Consensus       407 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~---~~l~~L~~L~L~~N~l~~~  483 (732)
                      ++.+..+..|..+++|+.|+|++|++++..|..|.++++|++|+|++|++++..+..+   ..+++|+.|+|++|++++.
T Consensus        99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l  178 (361)
T 2xot_A           99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKL  178 (361)
T ss_dssp             CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCC
T ss_pred             cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCcc
Confidence            5554444556666677777777777776666667777777777777777765444444   4567777777777777755


Q ss_pred             cchhhhcCCC--CCEEEccCCcCc
Q 004747          484 LPNWLFSFQA--IQMMDFSTNKFM  505 (732)
Q Consensus       484 ~p~~~~~~~~--L~~L~ls~N~l~  505 (732)
                      .+..+..++.  ++.|++++|++.
T Consensus       179 ~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          179 PLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             CHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             CHHHhhhccHhhcceEEecCCCcc
Confidence            4555666665  366777777765

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.73  E-value=1.4e-17  Score=176.66  Aligned_cols=177  Identities=26%  Similarity=0.227  Sum_probs=132.3

Q ss_pred             cEEEccCCCCCCCCchhhhhcCCCCCccEEeCCCCcccCCCccccc-CCCCCCEEeccCccCCCccccccCCCCCCCEEE
Q 004747          300 LLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKIT-ELKSLQALFLSNNLLIGEIPARIGNLTYLQVID  378 (732)
Q Consensus       300 ~~L~Ls~n~l~~~~p~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~  378 (732)
                      +.++++++.++ .+|..+..     .++.|++++|++++..+..+. .+++|++|+|++|++++..+..|..+++|++|+
T Consensus        21 ~~l~c~~~~l~-~iP~~~~~-----~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~   94 (361)
T 2xot_A           21 NILSCSKQQLP-NVPQSLPS-----YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLD   94 (361)
T ss_dssp             TEEECCSSCCS-SCCSSCCT-----TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred             CEEEeCCCCcC-ccCccCCC-----CCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEE
Confidence            45666666665 34543322     567777777777765565665 777888888888888766666777888888888


Q ss_pred             ccCCcCccccCccccCCcCcceeecccccccccCcccccCCCCCcEEEcccCceeeeccccC---CCCCCCCEEEccCCc
Q 004747          379 LSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTL---AGLKSLEIVDFSSNN  455 (732)
Q Consensus       379 Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~---~~l~~L~~L~Ls~N~  455 (732)
                      |++|++++..+..|.++++|+.|++++|.+.+..+..|..+++|+.|+|++|++++..+..|   ..+++|+.|+|++|+
T Consensus        95 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~  174 (361)
T 2xot_A           95 LSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNK  174 (361)
T ss_dssp             CCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSC
T ss_pred             CCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCC
Confidence            88888876666677778888888888888887777788888899999999998886544445   568899999999999


Q ss_pred             ccccchhhhhcCCC--CCEEEcccCCCcc
Q 004747          456 LSGSLNDAITKWTN--LKYFSIARNKLSG  482 (732)
Q Consensus       456 l~~~~~~~~~~l~~--L~~L~L~~N~l~~  482 (732)
                      +++..+..+..++.  ++.|++++|++..
T Consensus       175 l~~l~~~~~~~l~~~~l~~l~l~~N~~~C  203 (361)
T 2xot_A          175 LKKLPLTDLQKLPAWVKNGLYLHNNPLEC  203 (361)
T ss_dssp             CCCCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred             CCccCHHHhhhccHhhcceEEecCCCccC
Confidence            99777777888877  4889999998874

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.73  E-value=2.9e-17  Score=161.04  Aligned_cols=159  Identities=17%  Similarity=0.194  Sum_probs=143.6

Q ss_pred             CCEEeccCccCCCccccccCCCCCCCEEEccCCcCccccC-ccccCCcCcceeecccccccccCcccccCCCCCcEEEcc
Q 004747          350 LQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIP-LNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDIS  428 (732)
Q Consensus       350 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~  428 (732)
                      -+.+++++|.++ .+|..+.  ..+++|++++|.+++..+ ..+..+++|+.|++++|.+++..+..|..+++|++|+++
T Consensus        13 ~~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls   89 (220)
T 2v70_A           13 GTTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT   89 (220)
T ss_dssp             TTEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence            368999999998 5676553  457899999999997755 457899999999999999999888899999999999999


Q ss_pred             cCceeeeccccCCCCCCCCEEEccCCcccccchhhhhcCCCCCEEEcccCCCccccchhhhcCCCCCEEEccCCcCcccC
Q 004747          429 NNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFI  508 (732)
Q Consensus       429 ~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~ls~N~l~~~~  508 (732)
                      +|++++..+..|.++++|++|++++|++++..|..+..+++|++|+|++|++++..|..+..+++|+.|++++|++.+..
T Consensus        90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c  169 (220)
T 2v70_A           90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNC  169 (220)
T ss_dssp             SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSG
T ss_pred             CCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCC
Confidence            99999888888999999999999999999988999999999999999999999888999999999999999999998765


Q ss_pred             Ccc
Q 004747          509 PDG  511 (732)
Q Consensus       509 p~~  511 (732)
                      +..
T Consensus       170 ~l~  172 (220)
T 2v70_A          170 YLA  172 (220)
T ss_dssp             GGH
T ss_pred             chH
Confidence            543

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.72  E-value=2.1e-17  Score=185.86  Aligned_cols=190  Identities=24%  Similarity=0.329  Sum_probs=127.2

Q ss_pred             ccEEECCCCcCccccCchhhcccccCeeeCCCCccccccchhhhccCCCCEEEeccCCCCCcCccccccCcCCcEEEccC
Q 004747          227 LLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSF  306 (732)
Q Consensus       227 L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~  306 (732)
                      +..+.+..+.+....+  +..+.+|+.|++++|.+.. ++ .+..+++|+.|+|++|.+++..+  +..+++|+.|+|++
T Consensus        23 l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~   96 (605)
T 1m9s_A           23 TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDE   96 (605)
T ss_dssp             HHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCS
T ss_pred             HHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcC
Confidence            4555666666654433  4566777778888777764 33 47777778888888777775443  77777777777777


Q ss_pred             CCCCCCCchhhhhcCCCCCccEEeCCCCcccCCCcccccCCCCCCEEeccCccCCCccccccCCCCCCCEEEccCCcCcc
Q 004747          307 NDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSG  386 (732)
Q Consensus       307 n~l~~~~p~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~  386 (732)
                      |.+++ +| .+..+   ++|+.|+|++|.+.+ + ..+..+++|+.|+|++|.+++.  ..+..+++|+.|+|++|.+.+
T Consensus        97 N~l~~-l~-~l~~l---~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~  167 (605)
T 1m9s_A           97 NKIKD-LS-SLKDL---KKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD  167 (605)
T ss_dssp             SCCCC-CT-TSTTC---TTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCC
T ss_pred             CCCCC-Ch-hhccC---CCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCC
Confidence            77764 22 33333   377777777777764 3 3466777777777777777754  456777777777777777775


Q ss_pred             ccCccccCCcCcceeecccccccccCcccccCCCCCcEEEcccCceeee
Q 004747          387 SIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGE  435 (732)
Q Consensus       387 ~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  435 (732)
                      ..|  +..+++|+.|++++|.+++.  +.+..+++|+.|+|++|.+.+.
T Consensus       168 ~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          168 IVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNK  212 (605)
T ss_dssp             CGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred             chh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCC
Confidence            544  66677777777777777654  2466677777777777776643

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.72  E-value=3.8e-17  Score=160.20  Aligned_cols=154  Identities=24%  Similarity=0.250  Sum_probs=141.2

Q ss_pred             CEEeccCccCCCccccccCCCCCCCEEEccCCcCccccCccccCCcCcceeecccccccccCcccccCCCCCcEEEcccC
Q 004747          351 QALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNN  430 (732)
Q Consensus       351 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n  430 (732)
                      +.++++++.++ .+|..+.  ++++.|++++|.+++..+..+..+++|+.|++++|.+++..+..|.++++|++|+|++|
T Consensus        14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N   90 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN   90 (220)
T ss_dssp             TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence            67899999988 5676554  78999999999999877778999999999999999999999999999999999999999


Q ss_pred             ceeeeccccCCCCCCCCEEEccCCcccccchhhhhcCCCCCEEEcccCCCccccchhhhcCCCCCEEEccCCcCccc
Q 004747          431 QISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGF  507 (732)
Q Consensus       431 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~ls~N~l~~~  507 (732)
                      .+++..+..|.++++|++|++++|++++..+..|..+++|++|+|++|++++..+..+..+++|+.|++++|++...
T Consensus        91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~  167 (220)
T 2v9t_B           91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICD  167 (220)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred             cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCC
Confidence            99976666789999999999999999998899999999999999999999988888899999999999999998753

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.72  E-value=8.6e-20  Score=204.11  Aligned_cols=77  Identities=26%  Similarity=0.195  Sum_probs=38.8

Q ss_pred             cccceEEEccCCcccccCCcccccccCCceeecccccceecC-Cc-ccCccCCcEEeCCCCcCcccCCcC---CCCCCCC
Q 004747          559 LFSAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQV-PG-LYRLRSLRALDLSHNSLTGQIPGN---ISSLQEL  633 (732)
Q Consensus       559 l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~i-p~-l~~l~~L~~LdLs~N~l~~~ip~~---l~~l~~L  633 (732)
                      +++|+.|+|++|++++ +| .++++++|+.|+|++|++++.+ |. ++.+++|+.|+|++|.+++.+|..   +..+++|
T Consensus       485 l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L  562 (567)
T 1dce_A          485 LRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSV  562 (567)
T ss_dssp             CTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTC
T ss_pred             CCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCccc
Confidence            3444455555555543 44 4555555555555555555443 44 555555555555555555443321   1124555


Q ss_pred             CEEE
Q 004747          634 TLLN  637 (732)
Q Consensus       634 ~~L~  637 (732)
                      +.||
T Consensus       563 ~~L~  566 (567)
T 1dce_A          563 SSIL  566 (567)
T ss_dssp             SEEE
T ss_pred             CccC
Confidence            5554

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.71  E-value=1.6e-17  Score=159.13  Aligned_cols=155  Identities=22%  Similarity=0.263  Sum_probs=116.5

Q ss_pred             CEEEcccCCCccccchhhhcCCCCCEEEccCCcCcccCCcccccCccccCcCCCCCCCCCCcccCCCceeEEeEEEeecC
Q 004747          471 KYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDT  550 (732)
Q Consensus       471 ~~L~L~~N~l~~~~p~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  550 (732)
                      +++++++|.++ .+|..+.  .++++|++++|++++..+...|..                                   
T Consensus        11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~-----------------------------------   52 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGR-----------------------------------   52 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGG-----------------------------------
T ss_pred             CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCcccccc-----------------------------------
Confidence            56666666664 4555443  277788888888765544333222                                   


Q ss_pred             CchhhhhhcccceEEEccCCcccccCCcccccccCCceeecccccceecCCc-ccCccCCcEEeCCCCcCcccCCcCCCC
Q 004747          551 NELSFNYQLFSAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIPGNISS  629 (732)
Q Consensus       551 ~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~-l~~l~~L~~LdLs~N~l~~~ip~~l~~  629 (732)
                              +++|++|+|++|++++..|..+.++++|++|+|++|++++..|. +..+++|++|+|++|++++.+|..|..
T Consensus        53 --------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  124 (192)
T 1w8a_A           53 --------LPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEH  124 (192)
T ss_dssp             --------CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTT
T ss_pred             --------CCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhc
Confidence                    67888999999999988888999999999999999999988887 889999999999999999999999999


Q ss_pred             CCCCCEEEcccCcceeeCCCCCCCCCcCc-cccCCCCCCCCCC
Q 004747          630 LQELTLLNLSYNSFSGFVPWKQGYQKFPG-AFAGNPNLCLESS  671 (732)
Q Consensus       630 l~~L~~L~ls~N~l~g~ip~~~~~~~~~~-~~~gn~~lcg~~~  671 (732)
                      +++|++|++++|++++..+.......+.. .+.++...|+.|.
T Consensus       125 l~~L~~L~L~~N~l~c~c~l~~~~~~l~~~~~~~~~~~C~~P~  167 (192)
T 1w8a_A          125 LNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPS  167 (192)
T ss_dssp             CTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSST
T ss_pred             CCCCCEEEeCCCCccCcCcchHHHHHHHHcCCCCCCCCCCCCh
Confidence            99999999999999987653211001111 3455555666553

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.71  E-value=1.2e-16  Score=157.82  Aligned_cols=151  Identities=23%  Similarity=0.235  Sum_probs=67.4

Q ss_pred             ccEEeCCCCcccCCCcccccCCCCCCEEeccCccCCCccccccCCCCCCCEEEccCCcCccccCccccCCcCcceeeccc
Q 004747          326 LVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNN  405 (732)
Q Consensus       326 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~  405 (732)
                      .+.++.+++.++ .+|..+.  ++|++|++++|.+++..|..|..+++|++|++++|.+.+..+..+..+++|+.|++++
T Consensus        21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~   97 (229)
T 3e6j_A           21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT   97 (229)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence            344555555554 4444332  4566666666666555555555556666666666555433223333333333333333


Q ss_pred             ccccccCcccccCCCCCcEEEcccCceeeeccccCCCCCCCCEEEccCCcccccchhhhhcCCCCCEEEcccCCC
Q 004747          406 NNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKL  480 (732)
Q Consensus       406 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l  480 (732)
                      |.+++..+..+..+++|+.|++++|+++ .+|..+..+++|++|++++|++++..+..+..+++|+.|++++|++
T Consensus        98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~  171 (229)
T 3e6j_A           98 NQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPW  171 (229)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCB
T ss_pred             CcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCc
Confidence            3333333333333444444444444444 3333333444444444444444433333333344444444444433

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.70  E-value=5.2e-18  Score=195.75  Aligned_cols=181  Identities=23%  Similarity=0.211  Sum_probs=74.1

Q ss_pred             ccccCCCCCcEEEcccCceeeeccccCCCCCCCCEEEccCCcccccchhhhhcCCCCCEEEcccCCCccccchhhhcCCC
Q 004747          414 PELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQA  493 (732)
Q Consensus       414 ~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~  493 (732)
                      ..+..++.|+.|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..+..+++|++|+|++|.++ .+|..+..+++
T Consensus       218 ~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~  294 (727)
T 4b8c_D          218 DSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQ  294 (727)
T ss_dssp             ----CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTT
T ss_pred             hhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCC
Confidence            33444555555555555555 34444445555555555555555 44555555555555555555555 44555555555


Q ss_pred             CCEEEccCCcCcccCCcccccCccccCcCCCCCCCCCCcccCCCceeEEeEEEeecCCchhhhhhcccceEEEccCCccc
Q 004747          494 IQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVGMDLSDNLLH  573 (732)
Q Consensus       494 L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~  573 (732)
                      |++|+|++|.++ .+|.. |..                                           +++|+.|+|++|.|+
T Consensus       295 L~~L~L~~N~l~-~lp~~-~~~-------------------------------------------l~~L~~L~L~~N~l~  329 (727)
T 4b8c_D          295 LKYFYFFDNMVT-TLPWE-FGN-------------------------------------------LCNLQFLGVEGNPLE  329 (727)
T ss_dssp             CSEEECCSSCCC-CCCSS-TTS-------------------------------------------CTTCCCEECTTSCCC
T ss_pred             CCEEECCCCCCC-ccChh-hhc-------------------------------------------CCCccEEeCCCCccC
Confidence            555555555553 33433 111                                           445555555555555


Q ss_pred             ccCCcccccccC-CceeecccccceecCCcccCccCCcEEeCCCC--------cCcccCCcCCCCCCCCCEEEcccCcce
Q 004747          574 GTIPKGLFQLQG-LEYLNLSFNFLDGQVPGLYRLRSLRALDLSHN--------SLTGQIPGNISSLQELTLLNLSYNSFS  644 (732)
Q Consensus       574 g~ip~~l~~l~~-L~~L~Ls~N~l~~~ip~l~~l~~L~~LdLs~N--------~l~~~ip~~l~~l~~L~~L~ls~N~l~  644 (732)
                      |.+|..+..+.. +..|+|++|.++|.+|.     .|+.|++++|        .+.+..+..+.++..+....+++|-+.
T Consensus       330 ~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~-----~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~  404 (727)
T 4b8c_D          330 KQFLKILTEKSVTGLIFYLRDNRPEIPLPH-----ERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC  404 (727)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-----C-----------------------------------------CCC
T ss_pred             CCChHHHhhcchhhhHHhhccCcccCcCcc-----ccceeEeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence            555555443321 12355666666655553     3444555555        344444444555666666667777665


Q ss_pred             eeC
Q 004747          645 GFV  647 (732)
Q Consensus       645 g~i  647 (732)
                      +..
T Consensus       405 ~~~  407 (727)
T 4b8c_D          405 QHY  407 (727)
T ss_dssp             GGG
T ss_pred             ccc
Confidence            433

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.70  E-value=1.2e-19  Score=203.04  Aligned_cols=202  Identities=20%  Similarity=0.236  Sum_probs=98.1

Q ss_pred             cccccCeeeCCCCccccccchhhhccCCCCEEEeccCC-------------CCCcCccccccCcCCcEEE-ccCCCCCCC
Q 004747          247 SAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNH-------------LNYEISPRLVFFEKLLLLD-LSFNDLSGP  312 (732)
Q Consensus       247 ~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~-------------l~~~~~~~l~~l~~L~~L~-Ls~n~l~~~  312 (732)
                      .+++|+.|++++|.+. .+|..++++++|++|++++|.             ..+..|..++.+++|+.|+ ++.|.+.  
T Consensus       347 ~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~--  423 (567)
T 1dce_A          347 TDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD--  423 (567)
T ss_dssp             TTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH--
T ss_pred             cCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc--
Confidence            4455666666666654 455566666666666654442             2233344444444444444 3332211  


Q ss_pred             CchhhhhcCCCCCccEEeCCCCcccCCCcccccCCCCCCEEeccCccCCCccccccCCCCCCCEEEccCCcCccccCccc
Q 004747          313 LPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNI  392 (732)
Q Consensus       313 ~p~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~  392 (732)
                                  .|+.+.+++|.++. +|.     ..|+.|++++|.+++ +|. ++.+++|+.|++++|.++ .+|   
T Consensus       424 ------------~L~~l~l~~n~i~~-l~~-----~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp---  479 (567)
T 1dce_A          424 ------------DLRSKFLLENSVLK-MEY-----ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALP---  479 (567)
T ss_dssp             ------------HHHHHHHHHHHHHH-HHH-----TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCC---
T ss_pred             ------------hhhhhhhhcccccc-cCc-----cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccc---
Confidence                        22223333333331 111     124445555554443 333 444444555555444444 333   


Q ss_pred             cCCcCcceeecccccccccCcccccCCCCCcEEEcccCceeeeccccCCCCCCCCEEEccCCcccccc-hhhhhcCCCCC
Q 004747          393 VGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSL-NDAITKWTNLK  471 (732)
Q Consensus       393 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~  471 (732)
                                           ..++.+++|+.|+|++|.+++ +| .+..+++|++|++++|++++.. |..+..+++|+
T Consensus       480 ---------------------~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~  536 (567)
T 1dce_A          480 ---------------------PALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLV  536 (567)
T ss_dssp             ---------------------GGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCC
T ss_pred             ---------------------hhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCC
Confidence                                 344455555555555555553 34 4555555666666666655544 55555566666


Q ss_pred             EEEcccCCCccccch---hhhcCCCCCEEE
Q 004747          472 YFSIARNKLSGNLPN---WLFSFQAIQMMD  498 (732)
Q Consensus       472 ~L~L~~N~l~~~~p~---~~~~~~~L~~L~  498 (732)
                      .|++++|++++..|.   .+..+++|+.|+
T Consensus       537 ~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~  566 (567)
T 1dce_A          537 LLNLQGNSLCQEEGIQERLAEMLPSVSSIL  566 (567)
T ss_dssp             EEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred             EEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence            666666665544332   223356666654

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.70  E-value=2.4e-17  Score=166.37  Aligned_cols=167  Identities=20%  Similarity=0.287  Sum_probs=106.3

Q ss_pred             CcEEEcccCceeeeccccCCCCCCCCEEEccCCcccccchhhhhcCCCCCEEEcccCCCccccchhhhcCCCCCEEEccC
Q 004747          422 LKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFST  501 (732)
Q Consensus       422 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~ls~  501 (732)
                      +..+++++|.+++..  .+..+++|++|++++|.++. ++ .+..+++|++|++++|++++..+  +..+++|++|++++
T Consensus        21 l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~   94 (263)
T 1xeu_A           21 AVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNR   94 (263)
T ss_dssp             HHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCS
T ss_pred             HHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCC
Confidence            334444444444221  23344555555555555542 22 34555555555555555553322  55566666666666


Q ss_pred             CcCcccCCcccccCccccCcCCCCCCCCCCcccCCCceeEEeEEEeecCCchhhhhhcccceEEEccCCcccccCCcccc
Q 004747          502 NKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGTIPKGLF  581 (732)
Q Consensus       502 N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~  581 (732)
                      |++++ +|...                                              .+.|+.|++++|++++ ++ .+.
T Consensus        95 N~l~~-l~~~~----------------------------------------------~~~L~~L~L~~N~l~~-~~-~l~  125 (263)
T 1xeu_A           95 NRLKN-LNGIP----------------------------------------------SACLSRLFLDNNELRD-TD-SLI  125 (263)
T ss_dssp             SCCSC-CTTCC----------------------------------------------CSSCCEEECCSSCCSB-SG-GGT
T ss_pred             CccCC-cCccc----------------------------------------------cCcccEEEccCCccCC-Ch-hhc
Confidence            66543 12110                                              1456778888888874 43 577


Q ss_pred             cccCCceeecccccceecCCcccCccCCcEEeCCCCcCcccCCcCCCCCCCCCEEEcccCcceee
Q 004747          582 QLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGF  646 (732)
Q Consensus       582 ~l~~L~~L~Ls~N~l~~~ip~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~  646 (732)
                      .+++|++|++++|++++ +|.+..+++|+.|++++|++++.  ..+..+++|++|++++|++++.
T Consensus       126 ~l~~L~~L~Ls~N~i~~-~~~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          126 HLKNLEILSIRNNKLKS-IVMLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             TCTTCCEEECTTSCCCB-CGGGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred             CcccccEEECCCCcCCC-ChHHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence            88888899999998875 45688888999999999999876  6688889999999999998866

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.67  E-value=1.7e-16  Score=152.84  Aligned_cols=149  Identities=17%  Similarity=0.266  Sum_probs=81.8

Q ss_pred             CccEEeCCCCcccCCCcccccCCCCCCEEeccCccCCCccccccCCCCCCCEEEccCCcCccccCccccCCcCcceeecc
Q 004747          325 GLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVN  404 (732)
Q Consensus       325 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~  404 (732)
                      +|+.|++++|.++ .+| .+..+++|++|++++|.++.  +..+..+++|++|++++|.+++                  
T Consensus        45 ~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~------------------  102 (197)
T 4ezg_A           45 SLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTS------------------  102 (197)
T ss_dssp             TCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBG------------------
T ss_pred             CccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCc------------------
Confidence            4555555555555 334 34555555555555554431  1234455555555555555544                  


Q ss_pred             cccccccCcccccCCCCCcEEEcccCceeeeccccCCCCCCCCEEEccCCc-ccccchhhhhcCCCCCEEEcccCCCccc
Q 004747          405 NNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNN-LSGSLNDAITKWTNLKYFSIARNKLSGN  483 (732)
Q Consensus       405 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~  483 (732)
                            ..+..+..+++|++|++++|.+++..|..+..+++|++|++++|+ ++ .++ .+..+++|++|++++|++++ 
T Consensus       103 ------~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-  173 (197)
T 4ezg_A          103 ------DKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-  173 (197)
T ss_dssp             ------GGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-
T ss_pred             ------ccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-
Confidence                  344445555666666666666665555556666666666666665 43 333 45666666666666666653 


Q ss_pred             cchhhhcCCCCCEEEccCCcCc
Q 004747          484 LPNWLFSFQAIQMMDFSTNKFM  505 (732)
Q Consensus       484 ~p~~~~~~~~L~~L~ls~N~l~  505 (732)
                      ++ .+..+++|+.|++++|++.
T Consensus       174 ~~-~l~~l~~L~~L~l~~N~i~  194 (197)
T 4ezg_A          174 YR-GIEDFPKLNQLYAFSQTIG  194 (197)
T ss_dssp             CT-TGGGCSSCCEEEECBC---
T ss_pred             hH-HhccCCCCCEEEeeCcccC
Confidence            33 5566666666666666654

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.67  E-value=3.1e-16  Score=150.97  Aligned_cols=155  Identities=17%  Similarity=0.203  Sum_probs=107.9

Q ss_pred             cccCcCCcEEEccCCCCCCCCchhhhhcCCCCCccEEeCCCCcccCCCcccccCCCCCCEEeccCccCCCccccccCCCC
Q 004747          293 LVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLT  372 (732)
Q Consensus       293 l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~  372 (732)
                      ...+++|+.|++++|.++ .+| .+..++   +|++|++++|.++  .+..+..+++|++|++++|.+++..+..+..++
T Consensus        40 ~~~l~~L~~L~l~~n~i~-~l~-~l~~l~---~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~  112 (197)
T 4ezg_A           40 EAQMNSLTYITLANINVT-DLT-GIEYAH---NIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLT  112 (197)
T ss_dssp             HHHHHTCCEEEEESSCCS-CCT-TGGGCT---TCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCT
T ss_pred             hhhcCCccEEeccCCCcc-ChH-HHhcCC---CCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCC
Confidence            467889999999999998 555 455555   8999999999776  334788999999999999999988888999999


Q ss_pred             CCCEEEccCCcCccccCccccCCcCcceeecccccccccCcccccCCCCCcEEEcccCceeeeccccCCCCCCCCEEEcc
Q 004747          373 YLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFS  452 (732)
Q Consensus       373 ~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls  452 (732)
                      +|++|++++|.+++..|..+..+++|+.|++++|..                       ++ .+| .+..+++|++|+++
T Consensus       113 ~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~-----------------------i~-~~~-~l~~l~~L~~L~l~  167 (197)
T 4ezg_A          113 SLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGA-----------------------IT-DIM-PLKTLPELKSLNIQ  167 (197)
T ss_dssp             TCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTB-----------------------CC-CCG-GGGGCSSCCEEECT
T ss_pred             CCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCC-----------------------cc-ccH-hhcCCCCCCEEECC
Confidence            999999999999876666655555555555555542                       22 222 34445555555555


Q ss_pred             CCcccccchhhhhcCCCCCEEEcccCCCc
Q 004747          453 SNNLSGSLNDAITKWTNLKYFSIARNKLS  481 (732)
Q Consensus       453 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  481 (732)
                      +|++++. + .+..+++|++|++++|++.
T Consensus       168 ~n~i~~~-~-~l~~l~~L~~L~l~~N~i~  194 (197)
T 4ezg_A          168 FDGVHDY-R-GIEDFPKLNQLYAFSQTIG  194 (197)
T ss_dssp             TBCCCCC-T-TGGGCSSCCEEEECBC---
T ss_pred             CCCCcCh-H-HhccCCCCCEEEeeCcccC
Confidence            5555432 2 3445555555555555543

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.65  E-value=1.2e-16  Score=167.15  Aligned_cols=286  Identities=11%  Similarity=0.045  Sum_probs=143.1

Q ss_pred             cCCcEEEeeCcccccccCcccCC-CCCCCEEEeecccCC--CccccccccccEEECCCCcCccccCchhhc--------c
Q 004747          180 MNLEKLDFSFNSFCGEIPESLYY-LKSLKHLDLEKNNLT--GNVHDFYQSLLVLNLGSNRFSGTLPCFAAS--------A  248 (732)
Q Consensus       180 ~~L~~L~Ls~n~l~~~~p~~l~~-l~~L~~L~Ls~n~l~--~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~--------~  248 (732)
                      .++++|.++++ +.......+.. +++|++|||++|++.  ......+..++.+.+..|.+   .+..|..        +
T Consensus        25 ~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I---~~~aF~~~~~~~~~g~  100 (329)
T 3sb4_A           25 NSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFV---PAYAFSNVVNGVTKGK  100 (329)
T ss_dssp             HHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEE---CTTTTEEEETTEEEEC
T ss_pred             CceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCcccccccccccccccccc---CHHHhccccccccccc
Confidence            46677777654 22111122333 677788888877776  22222333333444444421   2233444        7


Q ss_pred             cccCeeeCCCCccccccchhhhccCCCCEEEeccCCCCCcCccccccCcCCcEEEccCCCCCCCCchhhhhcCCCCCccE
Q 004747          249 MSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVL  328 (732)
Q Consensus       249 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~L~~  328 (732)
                      ++|+.|++.+ .++...+.+|.++++|+++++++|.+....+..|..+.++..+....+...       .          
T Consensus       101 ~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~-------~----------  162 (329)
T 3sb4_A          101 QTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAY-------R----------  162 (329)
T ss_dssp             TTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHH-------H----------
T ss_pred             CCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhh-------h----------
Confidence            8888888877 666666667777888888888877776555566666665555554432110       0          


Q ss_pred             EeCCCCcccCCCcccccCCCCCC-EEeccCccCCCcccccc----CCCCCCCEEEccCCcCccccCccccCCcCcceeec
Q 004747          329 LDLSHNRFSGEIPLKITELKSLQ-ALFLSNNLLIGEIPARI----GNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIV  403 (732)
Q Consensus       329 L~Ls~n~l~~~~p~~l~~l~~L~-~L~Ls~n~l~~~~p~~l----~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l  403 (732)
                            .....-...|..+..|+ .+.+....   .++..+    ....++..+.+.++-...........+++|+.+++
T Consensus       163 ------~~~~i~~~~f~~~~~L~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L  233 (329)
T 3sb4_A          163 ------FKNRWEHFAFIEGEPLETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDI  233 (329)
T ss_dssp             ------TSTTTTTSCEEESCCCEEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEEC
T ss_pred             ------ccccccccccccccccceeEEecCCC---cHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEEC
Confidence                  00001111222233333 22222110   111111    11223334443332111100000112445555555


Q ss_pred             ccccccccCcccccCCCCCcEEEcccCceeeeccccCCCCCCCC-EEEccCCcccccchhhhhcCCCCCEEEcccCCCcc
Q 004747          404 NNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLE-IVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSG  482 (732)
Q Consensus       404 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~-~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  482 (732)
                      .+|+++......|.++++|+.+++.+| ++...+.+|.+|++|+ .+++.+ .++...+.+|.+|++|+.+++++|++..
T Consensus       234 ~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~  311 (329)
T 3sb4_A          234 SKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITT  311 (329)
T ss_dssp             TTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCE
T ss_pred             CCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCc
Confidence            555555444455666666666666665 5544455666666666 666665 5554445666666666666666666665


Q ss_pred             ccchhhhcCCCCCEEE
Q 004747          483 NLPNWLFSFQAIQMMD  498 (732)
Q Consensus       483 ~~p~~~~~~~~L~~L~  498 (732)
                      .-+..|.++++|+.+.
T Consensus       312 I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          312 LGDELFGNGVPSKLIY  327 (329)
T ss_dssp             ECTTTTCTTCCCCEEE
T ss_pred             cchhhhcCCcchhhhc
Confidence            5555666666666654

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.65  E-value=6.5e-16  Score=155.82  Aligned_cols=170  Identities=24%  Similarity=0.345  Sum_probs=103.9

Q ss_pred             cccccCeeeCCCCccccccchhhhccCCCCEEEeccCCCCCcCccccccCcCCcEEEccCCCCCCCCchhhhhcCCCCCc
Q 004747          247 SAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGL  326 (732)
Q Consensus       247 ~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~L  326 (732)
                      .+.+++.++++++.+++..  .+..+++|++|++++|.++. ++ .+..+++|++|++++|++++..+  +..++   +|
T Consensus        17 ~l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~---~L   87 (263)
T 1xeu_A           17 GLANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLT---KL   87 (263)
T ss_dssp             HHHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCS---SC
T ss_pred             HHHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCC---CC
Confidence            4455667777777776433  46777778888888777763 33 56677777777777777774332  44443   67


Q ss_pred             cEEeCCCCcccCCCcccccCCCCCCEEeccCccCCCccccccCCCCCCCEEEccCCcCccccCccccCCcCcceeecccc
Q 004747          327 VLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNN  406 (732)
Q Consensus       327 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n  406 (732)
                      +.|++++|++++ +|.. .. ++|++|++++|.+++. + .+..+++|+.|++++|++++. + .               
T Consensus        88 ~~L~L~~N~l~~-l~~~-~~-~~L~~L~L~~N~l~~~-~-~l~~l~~L~~L~Ls~N~i~~~-~-~---------------  145 (263)
T 1xeu_A           88 EELSVNRNRLKN-LNGI-PS-ACLSRLFLDNNELRDT-D-SLIHLKNLEILSIRNNKLKSI-V-M---------------  145 (263)
T ss_dssp             CEEECCSSCCSC-CTTC-CC-SSCCEEECCSSCCSBS-G-GGTTCTTCCEEECTTSCCCBC-G-G---------------
T ss_pred             CEEECCCCccCC-cCcc-cc-CcccEEEccCCccCCC-h-hhcCcccccEEECCCCcCCCC-h-H---------------
Confidence            777777777764 3332 22 6777777777777643 2 466677777777777766532 2 2               


Q ss_pred             cccccCcccccCCCCCcEEEcccCceeeeccccCCCCCCCCEEEccCCcccc
Q 004747          407 NLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSG  458 (732)
Q Consensus       407 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  458 (732)
                               +..+++|+.|++++|++++.  ..+..+++|+.|++++|.+++
T Consensus       146 ---------l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~  186 (263)
T 1xeu_A          146 ---------LGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVN  186 (263)
T ss_dssp             ---------GGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEEC
T ss_pred             ---------HccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccC
Confidence                     34445555555555555543  345555555555555555553

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.61  E-value=4.5e-16  Score=162.83  Aligned_cols=221  Identities=14%  Similarity=0.105  Sum_probs=109.9

Q ss_pred             cccccEEECCCCcCccccCchhhcccccCeeeCCCCccccccchhhhccCCCCEEEeccCC----CCCcCccccccCcCC
Q 004747          224 YQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNH----LNYEISPRLVFFEKL  299 (732)
Q Consensus       224 ~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~----l~~~~~~~l~~l~~L  299 (732)
                      +.+|+.|+|.+ .++...+..|..|++|+.+++++|.+....+.+|..+.++.++....+.    ........+..+..|
T Consensus       100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L  178 (329)
T 3sb4_A          100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL  178 (329)
T ss_dssp             CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred             cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence            33455555555 4444555667778888888888887776666677776666666554421    111223345555666


Q ss_pred             c-EEEccCCCCCCCCchhhhhc-CCCCCccEEeCCCCcccCCCcccccCCCCCCEEeccCccCCCccccccCCCCCCCEE
Q 004747          300 L-LLDLSFNDLSGPLPSKIAQT-TEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVI  377 (732)
Q Consensus       300 ~-~L~Ls~n~l~~~~p~~~~~l-~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L  377 (732)
                      + .+.+...   +.++..+... ....++..+.+.++-...........+++|+.+++++|+++...+..|.++++|+.+
T Consensus       179 ~~~i~~~~~---~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l  255 (329)
T 3sb4_A          179 ETTIQVGAM---GKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKI  255 (329)
T ss_dssp             EEEEEECTT---CCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEE
T ss_pred             ceeEEecCC---CcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEE
Confidence            5 4444332   1233322211 111134444443331110000001124556666666655554334445555556666


Q ss_pred             EccCCcCccccCccccCCcCcceeecccccccccCcccccCCCCCc-EEEcccCceeeeccccCCCCCCCCEEEccCCcc
Q 004747          378 DLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLK-ILDISNNQISGEIPLTLAGLKSLEIVDFSSNNL  456 (732)
Q Consensus       378 ~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~-~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l  456 (732)
                      ++++| +....+                        ..|.++++|+ .+++.+ .++...+.+|.+|++|+.+++++|++
T Consensus       256 ~l~~n-i~~I~~------------------------~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i  309 (329)
T 3sb4_A          256 KLPHN-LKTIGQ------------------------RVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKI  309 (329)
T ss_dssp             ECCTT-CCEECT------------------------TTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCC
T ss_pred             ECCcc-cceehH------------------------HHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCcc
Confidence            55554 333333                        3445555555 555555 44434445555556666666555555


Q ss_pred             cccchhhhhcCCCCCEEE
Q 004747          457 SGSLNDAITKWTNLKYFS  474 (732)
Q Consensus       457 ~~~~~~~~~~l~~L~~L~  474 (732)
                      +...+..|.++++|+.++
T Consensus       310 ~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          310 TTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             CEECTTTTCTTCCCCEEE
T ss_pred             CccchhhhcCCcchhhhc
Confidence            544455555555555554

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.59  E-value=9.4e-15  Score=139.82  Aligned_cols=129  Identities=26%  Similarity=0.335  Sum_probs=66.3

Q ss_pred             cEEeCCCCcccCCCcccccCCCCCCEEeccCccCCCcccc-ccCCCCCCCEEEccCCcCccccCccccCCcCcceeeccc
Q 004747          327 VLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPA-RIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNN  405 (732)
Q Consensus       327 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~-~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~  405 (732)
                      +.+++++|+++ .+|..+..  ++++|++++|.+++..+. .+..+++|++|++++|.+++..|..+.++++|+.|++++
T Consensus        11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence            45556666554 44543332  556666666665544332 255556666666666665554454444444444444444


Q ss_pred             ccccccCcccccCCCCCcEEEcccCceeeeccccCCCCCCCCEEEccCCcccc
Q 004747          406 NNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSG  458 (732)
Q Consensus       406 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  458 (732)
                      |++++..+..+..+++|++|++++|++++..|..+..+++|++|++++|.+.+
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c  140 (192)
T 1w8a_A           88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence            44444444444445555555555555555555555555555555555555543

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.57  E-value=6.5e-15  Score=137.75  Aligned_cols=66  Identities=17%  Similarity=0.204  Sum_probs=33.1

Q ss_pred             ccCCCCCcEEEcccCceeeec-cccCCCCCCCCEEEccCCcccccch---hhhhcCCCCCEEEcccCCCc
Q 004747          416 LDALDSLKILDISNNQISGEI-PLTLAGLKSLEIVDFSSNNLSGSLN---DAITKWTNLKYFSIARNKLS  481 (732)
Q Consensus       416 ~~~l~~L~~L~L~~n~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~~---~~~~~l~~L~~L~L~~N~l~  481 (732)
                      +..+++|++|++++|.+++.. +..+..+++|++|++++|.+++..+   ..+..+++|++|++++|.+.
T Consensus        91 ~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A           91 AEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             HHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred             HhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence            334455555555555555321 1345555555555555555554333   24455555555555555544

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.56  E-value=1.8e-14  Score=134.65  Aligned_cols=132  Identities=25%  Similarity=0.169  Sum_probs=89.6

Q ss_pred             cccCeeeCCCCccc-cccchhhhccCCCCEEEeccCCCCCcCccccccCcCCcEEEccCCCCCCCCchhhhhcCCCCCcc
Q 004747          249 MSLTVLKLDNNSVV-GGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLV  327 (732)
Q Consensus       249 ~~L~~L~Ls~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~L~  327 (732)
                      ++|++|++++|.++ +.+|..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+++.+|..+..++   +|+
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~---~L~   98 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLP---NLT   98 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCT---TCC
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCC---CCC
Confidence            56777777777766 55666667777777777777777654  5666777777777777777765666655555   677


Q ss_pred             EEeCCCCcccCCC-cccccCCCCCCEEeccCccCCCccc---cccCCCCCCCEEEccCCcCc
Q 004747          328 LLDLSHNRFSGEI-PLKITELKSLQALFLSNNLLIGEIP---ARIGNLTYLQVIDLSHNMLS  385 (732)
Q Consensus       328 ~L~Ls~n~l~~~~-p~~l~~l~~L~~L~Ls~n~l~~~~p---~~l~~l~~L~~L~Ls~n~l~  385 (732)
                      +|++++|.+++.. +..+..+++|++|++++|.+++..+   ..+..+++|++|++++|.+.
T Consensus        99 ~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A           99 HLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             EEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred             EEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence            7777777776421 2566677777777777777775444   35677777777777777665

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.56  E-value=3e-14  Score=134.44  Aligned_cols=135  Identities=24%  Similarity=0.250  Sum_probs=105.3

Q ss_pred             CCccceeecCCCCcEEEEEcCCCCCcccccccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEECCCCCCCCCCCcc
Q 004747           70 TNWTGVACNFQTGHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDA  149 (732)
Q Consensus        70 c~w~gv~c~~~~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~  149 (732)
                      |.|.++.|.            ++++. .+|..+  .++|++|++++|++++..+..|..+++|++|++++|.+++..+..
T Consensus         7 C~~~~l~~~------------~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~   71 (177)
T 2o6r_A            7 CSGTEIRCN------------SKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGV   71 (177)
T ss_dssp             EETTEEECC------------SSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTT
T ss_pred             eCCCEEEec------------CCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhH
Confidence            567777764            33343 233333  368999999999999777777899999999999999999877777


Q ss_pred             ccCCCCCCEEeCCCCCCCCCcCCchhhhcccCCcEEEeeCcccccccCcccCCCCCCCEEEeecccCCCccc
Q 004747          150 IMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVH  221 (732)
Q Consensus       150 ~~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~  221 (732)
                      |..+++|++|++++| .+++..+..+..+ ++|++|++++|.+++..+..+..+++|++|++++|.+.+..+
T Consensus        72 ~~~l~~L~~L~l~~N-~l~~~~~~~~~~l-~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           72 FDKLTKLTILYLHEN-KLQSLPNGVFDKL-TQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             TTTCTTCCEEECCSS-CCCCCCTTTTTTC-TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             ccCCCccCEEECCCC-CccccCHHHhhCC-cccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            889999999999999 5666666666777 789999999998886655567788888888888888776443

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.55  E-value=9.3e-15  Score=133.68  Aligned_cols=37  Identities=16%  Similarity=0.227  Sum_probs=16.2

Q ss_pred             CCCEEeccCccCC-CccccccCCCCCCCEEEccCCcCc
Q 004747          349 SLQALFLSNNLLI-GEIPARIGNLTYLQVIDLSHNMLS  385 (732)
Q Consensus       349 ~L~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~Ls~n~l~  385 (732)
                      +|+.|++++|.++ +.+|..+..+++|++|++++|.++
T Consensus        18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~   55 (149)
T 2je0_A           18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT   55 (149)
T ss_dssp             GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCC
T ss_pred             cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCC
Confidence            3444444444444 334444444444444444444443

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.55  E-value=8e-15  Score=134.10  Aligned_cols=130  Identities=18%  Similarity=0.197  Sum_probs=112.6

Q ss_pred             CCCCCCEEEccCCcCc-cccCccccCCcCcceeecccccccccCcccccCCCCCcEEEcccCceeeeccccCCCCCCCCE
Q 004747          370 NLTYLQVIDLSHNMLS-GSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEI  448 (732)
Q Consensus       370 ~l~~L~~L~Ls~n~l~-~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~  448 (732)
                      ..++|+.|++++|.++ +.+|..+..+++|+.|++++|.+++.  ..+..+++|++|++++|.+++.+|..+..+++|++
T Consensus        15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~   92 (149)
T 2je0_A           15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH   92 (149)
T ss_dssp             CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred             CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence            3467999999999998 78888888999999999999999877  67888999999999999999778887878999999


Q ss_pred             EEccCCccccc-chhhhhcCCCCCEEEcccCCCccccc---hhhhcCCCCCEEEccC
Q 004747          449 VDFSSNNLSGS-LNDAITKWTNLKYFSIARNKLSGNLP---NWLFSFQAIQMMDFST  501 (732)
Q Consensus       449 L~Ls~N~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~p---~~~~~~~~L~~L~ls~  501 (732)
                      |++++|++++. .+..+..+++|++|++++|++++..+   ..+..+++|+.||+++
T Consensus        93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            99999999874 34778899999999999999987655   5788899999998864

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.51  E-value=9.2e-14  Score=132.87  Aligned_cols=102  Identities=28%  Similarity=0.430  Sum_probs=47.7

Q ss_pred             cEEeCCCCcccCCCcccccCCCCCCEEeccCccCCCccccccCCCCCCCEEEccCCcCccccCccccCCcCcceeecccc
Q 004747          327 VLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNN  406 (732)
Q Consensus       327 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n  406 (732)
                      +.+++++|.++ .+|..+.  ++|++|++++|.++ .+|..+.++++|++|++++|.+++..+..|.++++|+.|++++|
T Consensus        13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N   88 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN   88 (193)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence            45566666665 4444332  35556666666555 44455555555555555555555444433433333333333333


Q ss_pred             cccccCcccccCCCCCcEEEcccCce
Q 004747          407 NLSGEIQPELDALDSLKILDISNNQI  432 (732)
Q Consensus       407 ~l~~~~~~~~~~l~~L~~L~L~~n~l  432 (732)
                      .+++..+..|..+++|+.|+|++|.+
T Consensus        89 ~l~~i~~~~f~~l~~L~~L~L~~N~l  114 (193)
T 2wfh_A           89 RLRCIPPRTFDGLKSLRLLSLHGNDI  114 (193)
T ss_dssp             CCCBCCTTTTTTCTTCCEEECCSSCC
T ss_pred             ccCEeCHHHhCCCCCCCEEECCCCCC
Confidence            33333333333333333333333333

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.51  E-value=1.1e-13  Score=132.27  Aligned_cols=128  Identities=23%  Similarity=0.278  Sum_probs=87.1

Q ss_pred             CEEeccCccCCCccccccCCCCCCCEEEccCCcCccccCccccCCcCcceeecccccccccCcccccCCCCCcEEEcccC
Q 004747          351 QALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNN  430 (732)
Q Consensus       351 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n  430 (732)
                      +.+++++|.++ .+|..+.  ++|++|++++|.++ .+|..+..+++|+.|++++|.+++..+..|..+++|++|++++|
T Consensus        13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N   88 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN   88 (193)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence            46677777666 4554432  46777777777776 55666677777777777777777666666777777777777777


Q ss_pred             ceeeeccccCCCCCCCCEEEccCCcccccchhhhhcCCCCCEEEcccCCCcc
Q 004747          431 QISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSG  482 (732)
Q Consensus       431 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  482 (732)
                      ++++..+..|.++++|++|++++|+++...+..|..+++|+.|++++|++..
T Consensus        89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C  140 (193)
T 2wfh_A           89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC  140 (193)
T ss_dssp             CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence            7776666667777777777777777775555566667777777777777653

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.50  E-value=1.6e-13  Score=129.34  Aligned_cols=130  Identities=22%  Similarity=0.164  Sum_probs=61.8

Q ss_pred             ccEEeCCCCcccCCCcccccCCCCCCEEeccCccCCCccccccCCCCCCCEEEccCCcCccccCccccCCcCcceeeccc
Q 004747          326 LVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNN  405 (732)
Q Consensus       326 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~  405 (732)
                      .+.+++++++++ .+|..+  .++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++
T Consensus         9 ~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   85 (177)
T 2o6r_A            9 GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE   85 (177)
T ss_dssp             TTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence            345556666555 344332  24566666666666654444555666666666666665543333333333333333333


Q ss_pred             ccccccCcccccCCCCCcEEEcccCceeeeccccCCCCCCCCEEEccCCcccc
Q 004747          406 NNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSG  458 (732)
Q Consensus       406 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  458 (732)
                      |.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+
T Consensus        86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~  138 (177)
T 2o6r_A           86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  138 (177)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence            33333333333444444444444444443333333444444444444444443

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.50  E-value=1.4e-12  Score=139.83  Aligned_cols=329  Identities=12%  Similarity=0.043  Sum_probs=160.8

Q ss_pred             ccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEECCCCCCCCCCCccccCCCCCCEEeCCCCCCCCCcCCchhhhcc
Q 004747          100 PRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFS  179 (732)
Q Consensus       100 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~  179 (732)
                      .+|.++++|+.+.+.. .++.+-..+|.++++|+.+++..+ ++.+...+|.++++|+.+.+..+  +...-...+... 
T Consensus        65 ~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~--l~~i~~~aF~~~-  139 (394)
T 4fs7_A           65 AAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM--LKSIGVEAFKGC-  139 (394)
T ss_dssp             TTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT--CCEECTTTTTTC-
T ss_pred             HHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc--eeeecceeeecc-
Confidence            4677888888888874 366555667888888888888654 55555677888888887776654  111222222222 


Q ss_pred             cCCcEEEeeCcccccccCcccCCCCCCCEEEeecccCCCccccccccccEEECCCCcCccccCchhhcccccCeeeCCCC
Q 004747          180 MNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNN  259 (732)
Q Consensus       180 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n  259 (732)
                       .+....... ........+|.++++|+.+.+..+..                      ......|..+.+|+.+++..+
T Consensus       140 -~~~~~~~~~-~~~~i~~~aF~~c~~L~~i~l~~~~~----------------------~I~~~~F~~c~~L~~i~l~~~  195 (394)
T 4fs7_A          140 -DFKEITIPE-GVTVIGDEAFATCESLEYVSLPDSME----------------------TLHNGLFSGCGKLKSIKLPRN  195 (394)
T ss_dssp             -CCSEEECCT-TCCEECTTTTTTCTTCCEEECCTTCC----------------------EECTTTTTTCTTCCBCCCCTT
T ss_pred             -cccccccCc-cccccchhhhcccCCCcEEecCCccc----------------------eeccccccCCCCceEEEcCCC
Confidence             222222211 12222334566666666666654321                      122334555666666666544


Q ss_pred             ccccccchhhhccCCCCEEEeccCCCCCcCccccccCcCCcEEEccCCCCCCCCchhhhhcCCCCCccEEeCCCCcccCC
Q 004747          260 SVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGE  339 (732)
Q Consensus       260 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~L~~L~Ls~n~l~~~  339 (732)
                       ++.....+|.++..|+.+.+..+...  +........+|+.+.+....                            +..
T Consensus       196 -~~~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~~~l~~i~ip~~~----------------------------~~i  244 (394)
T 4fs7_A          196 -LKIIRDYCFAECILLENMEFPNSLYY--LGDFALSKTGVKNIIIPDSF----------------------------TEL  244 (394)
T ss_dssp             -CCEECTTTTTTCTTCCBCCCCTTCCE--ECTTTTTTCCCCEEEECTTC----------------------------CEE
T ss_pred             -ceEeCchhhccccccceeecCCCceE--eehhhcccCCCceEEECCCc----------------------------eec
Confidence             33233344555555555554433221  11222223344444433221                            101


Q ss_pred             CcccccCCCCCCEEeccCccCCCccccccCCCCCCCEEEccCCcCccccCccccCCcCcceeecccccccccCcccccCC
Q 004747          340 IPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDAL  419 (732)
Q Consensus       340 ~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l  419 (732)
                      -...+..+..++.+.+..+... .....|..+..++.+....+.+   ....+.++.+|+.+.+.++ +.......|.++
T Consensus       245 ~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c  319 (394)
T 4fs7_A          245 GKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIV---PEKTFYGCSSLTEVKLLDS-VKFIGEEAFESC  319 (394)
T ss_dssp             CSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEE---CTTTTTTCTTCCEEEECTT-CCEECTTTTTTC
T ss_pred             ccccccccccceeEEcCCCcce-eeccccccccccceeccCceee---ccccccccccccccccccc-cceechhhhcCC
Confidence            1122333444444444333221 2222334444444444433321   1123344444444444332 322333345556


Q ss_pred             CCCcEEEcccCceeeeccccCCCCCCCCEEEccCCcccccchhhhhcCCCCCEEEcccCCCccccchhhhcCCCCCEE
Q 004747          420 DSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMM  497 (732)
Q Consensus       420 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L  497 (732)
                      .+|+.+++.++ ++..-..+|.+|++|+.+++..+ ++.....+|.+|.+|+.+++..+ +. .+...+.++++|+.+
T Consensus       320 ~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I  393 (394)
T 4fs7_A          320 TSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKWI  393 (394)
T ss_dssp             TTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred             CCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence            66666666543 44344456666666666666554 44344556666666666666544 21 233445556555543

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.48  E-value=2.3e-12  Score=137.66  Aligned_cols=242  Identities=8%  Similarity=0.051  Sum_probs=143.7

Q ss_pred             CCCEEeccCccCCCccccccCCCCCCCEEEccCCcCccccCccccCCcCcceeecccccccccCcccccCCCCCcEEEcc
Q 004747          349 SLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDIS  428 (732)
Q Consensus       349 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~  428 (732)
                      +|+.+.+.++ ++......|.++ +|+.+.+.. .+...-+.+|.+|.+|+.+++.+|.++......|. +.+|+.+.+.
T Consensus       136 ~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp  211 (401)
T 4fdw_A          136 QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLP  211 (401)
T ss_dssp             CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECC
T ss_pred             CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeC
Confidence            4555555443 332222334442 455555553 34333444555555555555555555544444444 4667777776


Q ss_pred             cCceeeeccccCCCCCCCCEEEccCCcccccchhhhhcCCCCCEEEcccCCCccccchhhhcCCCCCEEEccCCcCcc--
Q 004747          429 NNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMG--  506 (732)
Q Consensus       429 ~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~ls~N~l~~--  506 (732)
                      ++ ++..-..+|.+|++|+.+++..+ ++.....+|.. .+|+.+.+ .+.++..-+..|.++++|+.+++.+|.+..  
T Consensus       212 ~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~  287 (401)
T 4fdw_A          212 VT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDP  287 (401)
T ss_dssp             TT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCT
T ss_pred             Cc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCc
Confidence            44 55455566777777777777654 44344555655 57777777 344554445667777777777777766531  


Q ss_pred             --cCCcccccCccccCcCCCCCCCCCCcccCCCceeEEeEEEeecCCchhhhhhcccceEEEccCCcccccCCccccccc
Q 004747          507 --FIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGTIPKGLFQLQ  584 (732)
Q Consensus       507 --~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~  584 (732)
                        .++...|.                                           .+.+|+.+++. +.++..-...+.+++
T Consensus       288 ~~~I~~~aF~-------------------------------------------~c~~L~~l~l~-~~i~~I~~~aF~~c~  323 (401)
T 4fdw_A          288 EAMIHPYCLE-------------------------------------------GCPKLARFEIP-ESIRILGQGLLGGNR  323 (401)
T ss_dssp             TCEECTTTTT-------------------------------------------TCTTCCEECCC-TTCCEECTTTTTTCC
T ss_pred             ccEECHHHhh-------------------------------------------CCccCCeEEeC-CceEEEhhhhhcCCC
Confidence              13333322                                           26677777777 346534445566778


Q ss_pred             CCceeecccccceecCCc-ccCccCCcEEeCCCCcCcccCCcCCCCCC-CCCEEEcccCcce
Q 004747          585 GLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIPGNISSLQ-ELTLLNLSYNSFS  644 (732)
Q Consensus       585 ~L~~L~Ls~N~l~~~ip~-l~~l~~L~~LdLs~N~l~~~ip~~l~~l~-~L~~L~ls~N~l~  644 (732)
                      +|+.++|..| ++..-+. +.++ +|+.+++++|.+....+..|..++ .++.+.+..+.+.
T Consensus       324 ~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~  383 (401)
T 4fdw_A          324 KVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE  383 (401)
T ss_dssp             SCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred             CccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence            8888888655 5533334 6667 888888888888766677777774 6777777766543

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.48  E-value=7.4e-13  Score=141.44  Aligned_cols=248  Identities=11%  Similarity=0.083  Sum_probs=165.1

Q ss_pred             CchhhcccccCeeeCCCCccccccchhhhccCCCCEEEeccCCCCCcCccccccCcCCcEEEccCCCCCCCCchhhhhcC
Q 004747          242 PCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTT  321 (732)
Q Consensus       242 ~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~  321 (732)
                      ...|.++ +|+.+.+..+ ++.....+|.++ +|+.+.+.. .++......|.++++|+.++++.|.++. ++.......
T Consensus       129 ~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~-I~~~aF~~~  203 (401)
T 4fdw_A          129 KDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITK-LPASTFVYA  203 (401)
T ss_dssp             TTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSE-ECTTTTTTC
T ss_pred             HhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceE-echhhEeec
Confidence            3445553 5777777655 544445556663 577777764 4554555667777777777777777763 333322233


Q ss_pred             CCCCccEEeCCCCcccCCCcccccCCCCCCEEeccCccCCCccccccCCCCCCCEEEccCCcCccccCccccCCcCccee
Q 004747          322 EKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLAL  401 (732)
Q Consensus       322 ~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L  401 (732)
                         +|+.+.+..+ ++..-..+|..+++|+.+++..+ ++......|.+ .+|+.+++. +.++..-..+|.+|.+|+.+
T Consensus       204 ---~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l  276 (401)
T 4fdw_A          204 ---GIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEV  276 (401)
T ss_dssp             ---CCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEE
T ss_pred             ---ccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEE
Confidence               7788888744 55455567788888888888764 44333445555 678888884 44554556777888888888


Q ss_pred             eccccccc-----ccCcccccCCCCCcEEEcccCceeeeccccCCCCCCCCEEEccCCcccccchhhhhcCCCCCEEEcc
Q 004747          402 IVNNNNLS-----GEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIA  476 (732)
Q Consensus       402 ~l~~n~l~-----~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~  476 (732)
                      .+.+|.+.     ......|.++++|+.+++.+ .++..-..+|.+|++|+.+++..+ ++.....+|.++ +|+.+++.
T Consensus       277 ~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~  353 (401)
T 4fdw_A          277 TTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVE  353 (401)
T ss_dssp             EEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEEC
T ss_pred             EeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEc
Confidence            88777654     34455678888888888884 466566677888888888888654 655556778888 88888888


Q ss_pred             cCCCccccchhhhcCC-CCCEEEccCCcC
Q 004747          477 RNKLSGNLPNWLFSFQ-AIQMMDFSTNKF  504 (732)
Q Consensus       477 ~N~l~~~~p~~~~~~~-~L~~L~ls~N~l  504 (732)
                      +|.+....+..+..++ +++.+.+..+.+
T Consensus       354 ~n~~~~l~~~~F~~~~~~l~~l~vp~~~~  382 (401)
T 4fdw_A          354 GTTPPQVFEKVWYGFPDDITVIRVPAESV  382 (401)
T ss_dssp             CSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred             CCCCcccccccccCCCCCccEEEeCHHHH
Confidence            8877655555666663 567777665544

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.47  E-value=8.8e-13  Score=141.42  Aligned_cols=312  Identities=11%  Similarity=0.034  Sum_probs=184.1

Q ss_pred             ccccccCCCCCCEEECCCCCCCCCCCccccCCCCCCEEeCCCCCCCCCcCCchhhhcccCCcEEEeeCcccccccCcccC
Q 004747          122 ISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLY  201 (732)
Q Consensus       122 ~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~  201 (732)
                      -..+|.++.+|+.+++.. .++.+...+|.+|++|+.+++..+  +..                         .-..+|.
T Consensus        63 g~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~--l~~-------------------------I~~~aF~  114 (394)
T 4fs7_A           63 GYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS--VKM-------------------------IGRCTFS  114 (394)
T ss_dssp             CTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT--CCE-------------------------ECTTTTT
T ss_pred             HHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC--ceE-------------------------ccchhhc
Confidence            345688888888888864 466566677888888888887654  111                         1122344


Q ss_pred             CCCCCCEEEeecccCCCcccccccc--ccEEECCCCcCccccCchhhcccccCeeeCCCCccccccchhhhccCCCCEEE
Q 004747          202 YLKSLKHLDLEKNNLTGNVHDFYQS--LLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLN  279 (732)
Q Consensus       202 ~l~~L~~L~Ls~n~l~~~~~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~  279 (732)
                      ++.+|+.+.+..+ +.......|..  +....... .........|..+++|+.+.+.++. ......+|.++.+|+.++
T Consensus       115 ~c~~L~~i~~p~~-l~~i~~~aF~~~~~~~~~~~~-~~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~  191 (394)
T 4fs7_A          115 GCYALKSILLPLM-LKSIGVEAFKGCDFKEITIPE-GVTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIK  191 (394)
T ss_dssp             TCTTCCCCCCCTT-CCEECTTTTTTCCCSEEECCT-TCCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCC
T ss_pred             ccccchhhcccCc-eeeecceeeecccccccccCc-cccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEE
Confidence            4444444433322 11111111111  11111000 0011112334445555555554332 112233344444444444


Q ss_pred             eccCCCCCcCccccccCcCCcEEEccCCCCCCCCchhhhhcCCCCCccEEeCCCCcccCCCcccccCCCCCCEEeccCcc
Q 004747          280 LSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNL  359 (732)
Q Consensus       280 L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~  359 (732)
                      +..+ ++......                        +..+.   .|+.+.+..+...  +........+|+.+.+....
T Consensus       192 l~~~-~~~I~~~~------------------------F~~~~---~L~~i~~~~~~~~--i~~~~~~~~~l~~i~ip~~~  241 (394)
T 4fs7_A          192 LPRN-LKIIRDYC------------------------FAECI---LLENMEFPNSLYY--LGDFALSKTGVKNIIIPDSF  241 (394)
T ss_dssp             CCTT-CCEECTTT------------------------TTTCT---TCCBCCCCTTCCE--ECTTTTTTCCCCEEEECTTC
T ss_pred             cCCC-ceEeCchh------------------------hcccc---ccceeecCCCceE--eehhhcccCCCceEEECCCc
Confidence            4332 21111122                        22222   4554544443322  22233445678888776543


Q ss_pred             CCCccccccCCCCCCCEEEccCCcCccccCccccCCcCcceeecccccccccCcccccCCCCCcEEEcccCceeeecccc
Q 004747          360 LIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLT  439 (732)
Q Consensus       360 l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~  439 (732)
                       +......+..+..++.+.+..+... .....+..+..++.+....+.+.   ...+..+.+|+.+.+.++ ++..-..+
T Consensus       242 -~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~a  315 (394)
T 4fs7_A          242 -TELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VKFIGEEA  315 (394)
T ss_dssp             -CEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CCEECTTT
T ss_pred             -eecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeec---cccccccccccccccccc-cceechhh
Confidence             3233456788999999999877544 55667888889988887765433   345778999999999875 66566678


Q ss_pred             CCCCCCCCEEEccCCcccccchhhhhcCCCCCEEEcccCCCccccchhhhcCCCCCEEEccCC
Q 004747          440 LAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTN  502 (732)
Q Consensus       440 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~ls~N  502 (732)
                      |.+|++|+.+++.++ ++.....+|.+|.+|+.+++..+ ++..-..+|.+|++|+.+++..+
T Consensus       316 F~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~  376 (394)
T 4fs7_A          316 FESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR  376 (394)
T ss_dssp             TTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred             hcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence            999999999999754 66566788999999999999877 66455678999999999999765

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.43  E-value=3e-13  Score=126.38  Aligned_cols=90  Identities=26%  Similarity=0.242  Sum_probs=81.7

Q ss_pred             cccceEEEccCCcccccCCcccccccCCceeecccccceecCCc-ccCccCCcEEeCCCCcCcccCCcCCCCCCCCCEEE
Q 004747          559 LFSAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLN  637 (732)
Q Consensus       559 l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~-l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~  637 (732)
                      ...+++|+|++|++++..|..+.++++|++|+|++|+|++..+. +..+++|++|+|++|+|++..|..|..+++|++|+
T Consensus        29 ~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  108 (170)
T 3g39_A           29 PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIW  108 (170)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEE
Confidence            35678899999999988888999999999999999999977776 68999999999999999988888899999999999


Q ss_pred             cccCcceeeCC
Q 004747          638 LSYNSFSGFVP  648 (732)
Q Consensus       638 ls~N~l~g~ip  648 (732)
                      +++|++.+..+
T Consensus       109 L~~N~~~c~c~  119 (170)
T 3g39_A          109 LLNNPWDCACS  119 (170)
T ss_dssp             CCSSCBCTTBG
T ss_pred             eCCCCCCCCch
Confidence            99999987654

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.42  E-value=2.5e-15  Score=144.76  Aligned_cols=149  Identities=22%  Similarity=0.310  Sum_probs=81.2

Q ss_pred             CccEEeCCCCcccCCCcc------cccCCCCCCEEeccCccCCCccccccCCCCCCCEEEccCCcCccccCccccCCcCc
Q 004747          325 GLVLLDLSHNRFSGEIPL------KITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQL  398 (732)
Q Consensus       325 ~L~~L~Ls~n~l~~~~p~------~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L  398 (732)
                      .++.++++.+.+++.+|.      .+..+++|++|++++|.+++ +| .+..+++|++|++++|.++ .+|.        
T Consensus        19 ~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~--------   87 (198)
T 1ds9_A           19 SVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIEN--------   87 (198)
T ss_dssp             CCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSS--------
T ss_pred             cccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccc--------
Confidence            455555665655555443      45555555555555555553 33 4455555555555555544 3333        


Q ss_pred             ceeecccccccccCcccccCCCCCcEEEcccCceeeeccccCCCCCCCCEEEccCCcccccch-hhhhcCCCCCEEEccc
Q 004747          399 LALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLN-DAITKWTNLKYFSIAR  477 (732)
Q Consensus       399 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~  477 (732)
                                      .+..+++|+.|++++|++++ +| .+..+++|++|++++|++++..+ ..+..+++|++|++++
T Consensus        88 ----------------~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~  149 (198)
T 1ds9_A           88 ----------------LDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAG  149 (198)
T ss_dssp             ----------------HHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECS
T ss_pred             ----------------hhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecC
Confidence                            33444556666666666553 33 35555666666666666654322 3455666666666666


Q ss_pred             CCCccccch----------hhhcCCCCCEEEccCCcC
Q 004747          478 NKLSGNLPN----------WLFSFQAIQMMDFSTNKF  504 (732)
Q Consensus       478 N~l~~~~p~----------~~~~~~~L~~L~ls~N~l  504 (732)
                      |++.+.+|.          .+..+++|+.||  +|.+
T Consensus       150 N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i  184 (198)
T 1ds9_A          150 NPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPV  184 (198)
T ss_dssp             CHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGG
T ss_pred             CccccccccccchHHHHHHHHHhCCCcEEEC--Cccc
Confidence            666555443          256677777765  4444

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.42  E-value=3.6e-13  Score=126.81  Aligned_cols=132  Identities=23%  Similarity=0.306  Sum_probs=80.9

Q ss_pred             ccCCCCCCEEeccCccCCCccccccCCC-CCCCEEEccCCcCccccCccccCCcCcceeecccccccccCcccccCCCCC
Q 004747          344 ITELKSLQALFLSNNLLIGEIPARIGNL-TYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSL  422 (732)
Q Consensus       344 l~~l~~L~~L~Ls~n~l~~~~p~~l~~l-~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L  422 (732)
                      +..+++|+.|++++|.++. +|. +..+ ++|++|++++|.+++                        .  ..+..+++|
T Consensus        15 ~~~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~------------------------~--~~l~~l~~L   66 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRK------------------------L--DGFPLLRRL   66 (176)
T ss_dssp             EECTTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCE------------------------E--CCCCCCSSC
T ss_pred             cCCcCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCc------------------------c--cccccCCCC
Confidence            3445566666666666652 333 2332 256666666655553                        2  235566677


Q ss_pred             cEEEcccCceeeeccccCCCCCCCCEEEccCCcccccchh--hhhcCCCCCEEEcccCCCccccchh----hhcCCCCCE
Q 004747          423 KILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLND--AITKWTNLKYFSIARNKLSGNLPNW----LFSFQAIQM  496 (732)
Q Consensus       423 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~--~~~~l~~L~~L~L~~N~l~~~~p~~----~~~~~~L~~  496 (732)
                      ++|++++|.+++..+..+..+++|++|++++|+++. +|.  .+..+++|++|++++|++. .+|..    +..+++|+.
T Consensus        67 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~  144 (176)
T 1a9n_A           67 KTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRV  144 (176)
T ss_dssp             CEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSE
T ss_pred             CEEECCCCcccccCcchhhcCCCCCEEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccce
Confidence            777777777765444444667777777777777753 443  5667777777777777776 44543    677777777


Q ss_pred             EEccCCcCc
Q 004747          497 MDFSTNKFM  505 (732)
Q Consensus       497 L~ls~N~l~  505 (732)
                      ||+++|...
T Consensus       145 Ld~~~n~~~  153 (176)
T 1a9n_A          145 LDFQKVKLK  153 (176)
T ss_dssp             ETTEECCHH
T ss_pred             eCCCcCCHH
Confidence            777777654

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.42  E-value=3.1e-13  Score=127.28  Aligned_cols=130  Identities=22%  Similarity=0.165  Sum_probs=90.3

Q ss_pred             CCCccEEeCCCCcccCCCcccccCCCCCCEEeccCccCCCccccccCCCCCCCEEEccCCcCccccCccccCCcCcceee
Q 004747          323 KAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALI  402 (732)
Q Consensus       323 ~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~  402 (732)
                      ..+|+.|++++|.++ .+|......++|++|++++|.+++.  ..+..+++|++|++++|.+++..+..+          
T Consensus        18 ~~~L~~L~l~~n~l~-~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~----------   84 (176)
T 1a9n_A           18 AVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLD----------   84 (176)
T ss_dssp             TTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHH----------
T ss_pred             cCCceEEEeeCCCCc-hhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchh----------
Confidence            348999999999999 4565433345999999999999864  578899999999999999885433333          


Q ss_pred             cccccccccCcccccCCCCCcEEEcccCceeeeccc--cCCCCCCCCEEEccCCcccccchh----hhhcCCCCCEEEcc
Q 004747          403 VNNNNLSGEIQPELDALDSLKILDISNNQISGEIPL--TLAGLKSLEIVDFSSNNLSGSLND----AITKWTNLKYFSIA  476 (732)
Q Consensus       403 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~--~~~~l~~L~~L~Ls~N~l~~~~~~----~~~~l~~L~~L~L~  476 (732)
                                    ..+++|++|++++|.++ .+|.  .+..+++|++|++++|.++. +|.    .+..+++|++|+++
T Consensus        85 --------------~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~  148 (176)
T 1a9n_A           85 --------------QALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQ  148 (176)
T ss_dssp             --------------HHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTE
T ss_pred             --------------hcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCC
Confidence                          34555666666666554 3333  45566666666666666653 333    36667777777777


Q ss_pred             cCCCc
Q 004747          477 RNKLS  481 (732)
Q Consensus       477 ~N~l~  481 (732)
                      +|...
T Consensus       149 ~n~~~  153 (176)
T 1a9n_A          149 KVKLK  153 (176)
T ss_dssp             ECCHH
T ss_pred             cCCHH
Confidence            77654

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.40  E-value=8e-13  Score=123.94  Aligned_cols=90  Identities=24%  Similarity=0.245  Sum_probs=80.6

Q ss_pred             cccceEEEccCCcccccCCcccccccCCceeecccccceecCCc-ccCccCCcEEeCCCCcCcccCCcCCCCCCCCCEEE
Q 004747          559 LFSAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLN  637 (732)
Q Consensus       559 l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~-l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~  637 (732)
                      .+.|+.|+|++|++++..|..+.++++|++|+|++|+|++..+. +.++++|++|||++|+|++..+..|..+++|++|+
T Consensus        32 ~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~  111 (174)
T 2r9u_A           32 PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIY  111 (174)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred             CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEE
Confidence            35678999999999988888999999999999999999976666 68899999999999999987777799999999999


Q ss_pred             cccCcceeeCC
Q 004747          638 LSYNSFSGFVP  648 (732)
Q Consensus       638 ls~N~l~g~ip  648 (732)
                      +++|++....+
T Consensus       112 L~~N~~~c~~~  122 (174)
T 2r9u_A          112 LYNNPWDCECR  122 (174)
T ss_dssp             CCSSCBCTTBG
T ss_pred             eCCCCcccccc
Confidence            99999986543

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.38  E-value=1.4e-14  Score=139.50  Aligned_cols=135  Identities=27%  Similarity=0.307  Sum_probs=81.4

Q ss_pred             cccccCeeeCCCCccccccch------hhhccCCCCEEEeccCCCCCcCccccccCcCCcEEEccCCCCCCCCchhhhhc
Q 004747          247 SAMSLTVLKLDNNSVVGGIPT------CIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQT  320 (732)
Q Consensus       247 ~~~~L~~L~Ls~n~l~~~~~~------~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l  320 (732)
                      ....++.++++.+.+.+.+|.      .+..+++|++|++++|.+++ +| .+..+++|++|++++|.++ .+|..+..+
T Consensus        16 ~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~   92 (198)
T 1ds9_A           16 ERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVA   92 (198)
T ss_dssp             HTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHH
T ss_pred             hcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcC
Confidence            344555556666655555554      56666666666666666664 44 5666666666666666665 455544444


Q ss_pred             CCCCCccEEeCCCCcccCCCcccccCCCCCCEEeccCccCCCccc-cccCCCCCCCEEEccCCcCccccC
Q 004747          321 TEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIP-ARIGNLTYLQVIDLSHNMLSGSIP  389 (732)
Q Consensus       321 ~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~Ls~n~l~~~~p  389 (732)
                      +   +|++|++++|++++ +| .+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..|
T Consensus        93 ~---~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~  157 (198)
T 1ds9_A           93 D---TLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYK  157 (198)
T ss_dssp             H---HCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHH
T ss_pred             C---cCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccc
Confidence            4   56666666666663 34 45566667777777776664222 356666777777777776665444

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.33  E-value=8e-12  Score=116.68  Aligned_cols=105  Identities=25%  Similarity=0.258  Sum_probs=58.9

Q ss_pred             EEEcCCCCCcccccccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEECCCCCCCCCCCccccCCCCCCEEeCCCCC
Q 004747           86 SINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNP  165 (732)
Q Consensus        86 ~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~  165 (732)
                      .++++++.++. +|..+.  ++|++|+|++|++++..|..|.++++|++|+|++|+|++..+..|.++++|         
T Consensus        13 ~l~~s~n~l~~-ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L---------   80 (170)
T 3g39_A           13 TVDCSGKSLAS-VPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQL---------   80 (170)
T ss_dssp             EEECTTSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTC---------
T ss_pred             EEEeCCCCcCc-cCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCC---------
Confidence            34455555542 343332  556666666666665555556666666666666666665544444555444         


Q ss_pred             CCCCcCCchhhhcccCCcEEEeeCcccccccCcccCCCCCCCEEEeecccCCCc
Q 004747          166 ELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGN  219 (732)
Q Consensus       166 ~~~~~~p~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~  219 (732)
                                       ++|+|++|.+++..+..|.++++|++|+|++|.++..
T Consensus        81 -----------------~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~  117 (170)
T 3g39_A           81 -----------------TQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA  117 (170)
T ss_dssp             -----------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred             -----------------CEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence                             4455555555544444566677777777777766543

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.30  E-value=1.5e-11  Score=115.27  Aligned_cols=104  Identities=25%  Similarity=0.222  Sum_probs=60.4

Q ss_pred             EEEcCCCCCcccccccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEECCCCCCCCCCCccccCCCCCCEEeCCCCC
Q 004747           86 SINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNP  165 (732)
Q Consensus        86 ~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~  165 (732)
                      .++++++.+. .+|..+.  ++|++|+|++|++++..|..|.++++|++|+|++|+|++..+..|.++++|++|+|+   
T Consensus        16 ~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~---   89 (174)
T 2r9u_A           16 LVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN---   89 (174)
T ss_dssp             EEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC---
T ss_pred             EEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECC---
Confidence            4566666663 4444443  566666666666666556666666666666666666665444444555555555554   


Q ss_pred             CCCCcCCchhhhcccCCcEEEeeCcccccccCcccCCCCCCCEEEeecccCCC
Q 004747          166 ELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTG  218 (732)
Q Consensus       166 ~~~~~~p~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~  218 (732)
                                             +|.+++..+..|..+++|++|+|++|.+..
T Consensus        90 -----------------------~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c  119 (174)
T 2r9u_A           90 -----------------------DNHLKSIPRGAFDNLKSLTHIYLYNNPWDC  119 (174)
T ss_dssp             -----------------------SSCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred             -----------------------CCccceeCHHHhccccCCCEEEeCCCCccc
Confidence                                   445554434446666777777777666653

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.28  E-value=2.6e-13  Score=143.48  Aligned_cols=66  Identities=26%  Similarity=0.257  Sum_probs=32.3

Q ss_pred             hcccccCeeeCCCCccccc----cchhhhccCCCCEEEeccCCCCCc----CccccccCcCCcEEEccCCCCCC
Q 004747          246 ASAMSLTVLKLDNNSVVGG----IPTCIASLQALTHLNLSHNHLNYE----ISPRLVFFEKLLLLDLSFNDLSG  311 (732)
Q Consensus       246 ~~~~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~  311 (732)
                      ..+++|++|+|++|.+.+.    ++..+...++|++|+|++|.++..    ++..+...++|++|+|++|.++.
T Consensus       180 ~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~  253 (372)
T 3un9_A          180 AGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS  253 (372)
T ss_dssp             HTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred             hcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence            3445555555555555432    123334445555566555555432    22233344555666666655553

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.27  E-value=5.6e-10  Score=119.53  Aligned_cols=107  Identities=16%  Similarity=0.172  Sum_probs=58.3

Q ss_pred             cccCCC-CCCEEECCCCCCCCcccccccCCCCCCEEECCCCC---CCCCCCccccCCCCCCEEeCCCCCCCCCcCCchhh
Q 004747          101 RLCKLS-FLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNK---FVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVG  176 (732)
Q Consensus       101 ~l~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~---l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~p~~~~  176 (732)
                      +|.++. .|+.+.+..+ ++.+-..+|.++++|+.+.++.|.   ++.+...+|.++.+|+.+.+..+  +...-...+.
T Consensus        58 aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~--~~~I~~~aF~  134 (394)
T 4gt6_A           58 VFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS--VTEIDSEAFH  134 (394)
T ss_dssp             TTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT--CSEECTTTTT
T ss_pred             hccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc--cceehhhhhh
Confidence            455553 4777877643 554556678888888888877653   44445566777777777666544  1111122222


Q ss_pred             hcccCCcEEEeeCcccccccCcccCCCCCCCEEEee
Q 004747          177 NFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLE  212 (732)
Q Consensus       177 ~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls  212 (732)
                      .. .+|+.+.+..+ +.......|.++.+|+.+.+.
T Consensus       135 ~c-~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~  168 (394)
T 4gt6_A          135 HC-EELDTVTIPEG-VTSVADGMFSYCYSLHTVTLP  168 (394)
T ss_dssp             TC-TTCCEEECCTT-CCEECTTTTTTCTTCCEEECC
T ss_pred             hh-cccccccccce-eeeecccceeccccccccccc
Confidence            33 45555555432 222333344455555555444

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.22  E-value=5.7e-10  Score=119.45  Aligned_cols=332  Identities=12%  Similarity=0.122  Sum_probs=157.9

Q ss_pred             cccccCCC-CCCEEECCCCCCCCCCCccccCCCCCCEEeCCCCC--CCCCcCCchhhhcccCCcEEEeeCcccccccCcc
Q 004747          123 STCFGGLS-GLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNP--ELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPES  199 (732)
Q Consensus       123 ~~~~~~l~-~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~--~~~~~~p~~~~~l~~~L~~L~Ls~n~l~~~~p~~  199 (732)
                      ..+|.+++ .|+.+.+.. .++.+...+|.+|++|+.+.+..|.  .+...-...+... .+|+.+.+..+ ++......
T Consensus        56 ~~aF~~~~~~L~sI~iP~-svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c-~~L~~i~~~~~-~~~I~~~a  132 (394)
T 4gt6_A           56 DRVFCNYKYVLTSVQIPD-TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFC-SELTDIPILDS-VTEIDSEA  132 (394)
T ss_dssp             TTTTTTCCSCCCEEEECT-TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTC-TTCCBCGGGTT-CSEECTTT
T ss_pred             HhhccCCCCcCEEEEECC-CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhc-ccceeeccCCc-cceehhhh
Confidence            45677774 599999965 4776777889999999999887761  1111112223333 45555544332 33233344


Q ss_pred             cCCCCCCCEEEeecccCCCccccccccccEEECCCCcCccccCchhhcccccCeeeCCCCccccccchhhhccCCCCEEE
Q 004747          200 LYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLN  279 (732)
Q Consensus       200 l~~l~~L~~L~Ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~  279 (732)
                      |.++.+|+.+.+..+.                      .......+..+..|+.+.+..+ +...-..+|.. ..|+.+.
T Consensus       133 F~~c~~L~~i~lp~~~----------------------~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~  188 (394)
T 4gt6_A          133 FHHCEELDTVTIPEGV----------------------TSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIH  188 (394)
T ss_dssp             TTTCTTCCEEECCTTC----------------------CEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEE
T ss_pred             hhhhccccccccccee----------------------eeecccceecccccccccccce-eeEeccccccc-cceeEEE
Confidence            5556666666554321                      1122334455555666555443 22222233332 3456665


Q ss_pred             eccCCCCCcCccccccCcCCcEEEccCCCCCCCCchhhhhcCCCCCccEEeCCCCcccCCCcccccCCCCCCEEeccCcc
Q 004747          280 LSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNL  359 (732)
Q Consensus       280 L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~  359 (732)
                      +..+- .......+..+.+++......+.... ....+...........             ..+.....+..+.+.+ .
T Consensus       189 ip~~~-~~i~~~af~~c~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~ip~-~  252 (394)
T 4gt6_A          189 IPAKV-TRIGTNAFSECFALSTITSDSESYPA-IDNVLYEKSANGDYAL-------------IRYPSQREDPAFKIPN-G  252 (394)
T ss_dssp             ECTTC-CEECTTTTTTCTTCCEEEECCSSSCB-SSSCEEEECTTSCEEE-------------EECCTTCCCSEEECCT-T
T ss_pred             ECCcc-cccccchhhhccccceeccccccccc-ccceeecccccccccc-------------cccccccccceEEcCC-c
Confidence            54332 11223344455555555444333220 0000000000000000             0011112222222221 1


Q ss_pred             CCCccccccCCCCCCCEEEccCCcCccccCccccCCcCcceeecccccccccCcccccCCCCCcEEEcccCceeeecccc
Q 004747          360 LIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLT  439 (732)
Q Consensus       360 l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~  439 (732)
                      ++..-...|.++..|+.+.+.++... .....|.++..|+.+.+. +.+.......|.++.+|+.+++..+ ++..-..+
T Consensus       253 v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~a  329 (394)
T 4gt6_A          253 VARIETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDA  329 (394)
T ss_dssp             EEEECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTT
T ss_pred             ceEcccceeeecccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhH
Confidence            11122234555556666655444322 333445555566655553 2333334445667777777777654 44444566


Q ss_pred             CCCCCCCCEEEccCCcccccchhhhhcCCCCCEEEcccCCCccccchhhhcCCCCCEEEccCCcC
Q 004747          440 LAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKF  504 (732)
Q Consensus       440 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~ls~N~l  504 (732)
                      |.+|.+|+.+.+..+ ++.....+|.+|.+|+.+++.++...   -..+..+.+|+.+.+..+.+
T Consensus       330 F~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          330 FAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ---WNAISTDSGLQNLPVAPGSI  390 (394)
T ss_dssp             TTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH---HHTCBCCCCC----------
T ss_pred             hhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee---hhhhhccCCCCEEEeCCCCE
Confidence            777777777777543 55455567777777777777776533   13455666777776655543

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.19  E-value=3.2e-12  Score=135.16  Aligned_cols=161  Identities=16%  Similarity=0.136  Sum_probs=81.2

Q ss_pred             CccEEeCCCCcccCCCccccc-----CCCCCCEEeccCccCCCcccccc-CCCCCCCEEEccCCcCccccCccccCCcCc
Q 004747          325 GLVLLDLSHNRFSGEIPLKIT-----ELKSLQALFLSNNLLIGEIPARI-GNLTYLQVIDLSHNMLSGSIPLNIVGCFQL  398 (732)
Q Consensus       325 ~L~~L~Ls~n~l~~~~p~~l~-----~l~~L~~L~Ls~n~l~~~~p~~l-~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L  398 (732)
                      .|+.|++++|.++......+.     ..++|++|+|++|.++......+ ..+++|+.|+|++|.++......+..    
T Consensus        73 ~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~----  148 (372)
T 3un9_A           73 SLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRD----  148 (372)
T ss_dssp             TCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHH----
T ss_pred             hCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHH----
Confidence            567777777776633222221     12466666666666654322222 22345566666666654332222210    


Q ss_pred             ceeecccccccccCcccc-cCCCCCcEEEcccCceeee----ccccCCCCCCCCEEEccCCcccccc----hhhhhcCCC
Q 004747          399 LALIVNNNNLSGEIQPEL-DALDSLKILDISNNQISGE----IPLTLAGLKSLEIVDFSSNNLSGSL----NDAITKWTN  469 (732)
Q Consensus       399 ~~L~l~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~----~~~~~~l~~  469 (732)
                                      .+ ...++|+.|+|++|.+++.    ++..+..+++|++|+|++|.+++..    +..+...++
T Consensus       149 ----------------~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~  212 (372)
T 3un9_A          149 ----------------LLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQ  212 (372)
T ss_dssp             ----------------HHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSC
T ss_pred             ----------------HHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCC
Confidence                            11 1234566666666655432    2223345556666666666655322    334445556


Q ss_pred             CCEEEcccCCCccc----cchhhhcCCCCCEEEccCCcCc
Q 004747          470 LKYFSIARNKLSGN----LPNWLFSFQAIQMMDFSTNKFM  505 (732)
Q Consensus       470 L~~L~L~~N~l~~~----~p~~~~~~~~L~~L~ls~N~l~  505 (732)
                      |++|+|++|.++..    ++..+...++|++||+++|.++
T Consensus       213 L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~  252 (372)
T 3un9_A          213 LQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS  252 (372)
T ss_dssp             CCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred             cCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence            66666666666532    2333445566666666666654

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.15  E-value=1.1e-10  Score=122.92  Aligned_cols=109  Identities=24%  Similarity=0.253  Sum_probs=79.2

Q ss_pred             CC--CCccceeecCCCCcEEEEEcCCC-CCcccccccccCCCCCCEEECCC-CCCCCcccccccCCCCCCEEECCCCCCC
Q 004747           68 NC--TNWTGVACNFQTGHVVSINLTDT-SLSGQVHPRLCKLSFLEFLVLSS-NAFTGRISTCFGGLSGLKTLDLSYNKFV  143 (732)
Q Consensus        68 ~~--c~w~gv~c~~~~~~v~~L~L~~~-~l~~~~~~~l~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~  143 (732)
                      .|  |.|..|.|.            ++ +++ .+|. +..+++|++|+|++ |.+++..+..|.++++|++|+|++|+|+
T Consensus         4 ~c~~C~~~~v~~~------------~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~   69 (347)
T 2ifg_A            4 ACCPHGSSGLRCT------------RDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR   69 (347)
T ss_dssp             SSCCSSSSCEECC------------SSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCC
T ss_pred             cCccccCCEEEcC------------CCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccc
Confidence            46  778777774            23 455 3677 88899999999996 9998877788999999999999999999


Q ss_pred             CCCCccccCCCCCCEEeCCCCCCCCCcCCchhhhcccCCcEEEeeCcccc
Q 004747          144 GVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFC  193 (732)
Q Consensus       144 ~~~p~~~~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~~L~~L~Ls~n~l~  193 (732)
                      +..|..|.++++|++|+|++| .+++..+..+..+  .|++|+|.+|.+.
T Consensus        70 ~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~--~L~~l~l~~N~~~  116 (347)
T 2ifg_A           70 FVAPDAFHFTPRLSRLNLSFN-ALESLSWKTVQGL--SLQELVLSGNPLH  116 (347)
T ss_dssp             EECTTGGGSCSCCCEEECCSS-CCSCCCSTTTCSC--CCCEEECCSSCCC
T ss_pred             eeCHHHhcCCcCCCEEeCCCC-ccceeCHHHcccC--CceEEEeeCCCcc
Confidence            888888888888888888888 3443333333322  2555555555444

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.11  E-value=1e-10  Score=123.01  Aligned_cols=89  Identities=21%  Similarity=0.101  Sum_probs=62.4

Q ss_pred             hhhcccceEEEccC-CcccccCCcccccccCCceeecccccceecCCc-ccCccCCcEEeCCCCcCcccCCcCCCCCCCC
Q 004747          556 NYQLFSAVGMDLSD-NLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIPGNISSLQEL  633 (732)
Q Consensus       556 ~~~l~~L~~LdLs~-N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~-l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L  633 (732)
                      +..+.+|+.|+|++ |+|++..|..+.++++|+.|+|++|+|++.+|. +.++++|+.|||++|+|++..|..|..++ |
T Consensus        27 l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L  105 (347)
T 2ifg_A           27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-L  105 (347)
T ss_dssp             SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-C
T ss_pred             CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-c
Confidence            34455677777775 777765656677777777777777777776666 66777777777777777766666666555 7


Q ss_pred             CEEEcccCccee
Q 004747          634 TLLNLSYNSFSG  645 (732)
Q Consensus       634 ~~L~ls~N~l~g  645 (732)
                      +.|++++|++..
T Consensus       106 ~~l~l~~N~~~c  117 (347)
T 2ifg_A          106 QELVLSGNPLHC  117 (347)
T ss_dssp             CEEECCSSCCCC
T ss_pred             eEEEeeCCCccC
Confidence            777777777764

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.86  E-value=3.1e-07  Score=97.57  Aligned_cols=108  Identities=13%  Similarity=0.109  Sum_probs=50.0

Q ss_pred             cccCCcCcceeecccccccccCcccccCCCCCcEEEcccCceeeeccccCCCCCCCCEEEccCCcccccchhhhhcCCCC
Q 004747          391 NIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNL  470 (732)
Q Consensus       391 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L  470 (732)
                      .+.++..|+.+.+..+ ++......|.++.+|+.+.+..+ +.......|.+|++|+.+++.++.++......|.++.+|
T Consensus       235 ~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L  312 (379)
T 4h09_A          235 AFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKL  312 (379)
T ss_dssp             TTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTC
T ss_pred             cccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCC
Confidence            3444444444444332 22222334444555555555432 332333445555555555555555544444455555555


Q ss_pred             CEEEcccCCCccccchhhhcCCCCCEEEccC
Q 004747          471 KYFSIARNKLSGNLPNWLFSFQAIQMMDFST  501 (732)
Q Consensus       471 ~~L~L~~N~l~~~~p~~~~~~~~L~~L~ls~  501 (732)
                      +.+.+..+ ++..-..+|.+|++|+.+.+..
T Consensus       313 ~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~  342 (379)
T 4h09_A          313 SSVTLPTA-LKTIQVYAFKNCKALSTISYPK  342 (379)
T ss_dssp             CEEECCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred             CEEEcCcc-ccEEHHHHhhCCCCCCEEEECC
Confidence            55555433 3322234455555555555543

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.84  E-value=2.1e-09  Score=112.56  Aligned_cols=64  Identities=17%  Similarity=0.199  Sum_probs=31.4

Q ss_pred             ccccCeeeCCCCccccccchhhh---ccCCCCEEEeccCCCCCc----CccccccCcCCcEEEccCCCCCC
Q 004747          248 AMSLTVLKLDNNSVVGGIPTCIA---SLQALTHLNLSHNHLNYE----ISPRLVFFEKLLLLDLSFNDLSG  311 (732)
Q Consensus       248 ~~~L~~L~Ls~n~l~~~~~~~l~---~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~  311 (732)
                      +++|++|++.+|.+.+..+..+.   .+++|++|+|+.|.+++.    ++..+..+++|+.|++++|.++.
T Consensus       251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d  321 (362)
T 2ra8_A          251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD  321 (362)
T ss_dssp             CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred             CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence            34555555555554432222222   245566666665555432    22233345566666666665553

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.76  E-value=6.8e-07  Score=94.85  Aligned_cols=316  Identities=10%  Similarity=0.041  Sum_probs=158.4

Q ss_pred             cccCCCCCCEEECCCCCCCCCCCccccCCCCCCEEeCCCCCCCCCcCCchhhhcccCCcEEEeeCcccccccCcccCCCC
Q 004747          125 CFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLK  204 (732)
Q Consensus       125 ~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~  204 (732)
                      ++....+|+.+.+.. .++.+...+|.+|.+|+.++|..+  +...-...+.+  .+|+.+.+..+ ++.....+|.+ .
T Consensus        41 ~~~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~--v~~Ig~~aF~~--c~l~~i~~~~~-l~~I~~~aF~~-~  113 (379)
T 4h09_A           41 WYKDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST--VTSIGDGAFAD--TKLQSYTGMER-VKKFGDYVFQG-T  113 (379)
T ss_dssp             TGGGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT--CCEECTTTTTT--CCCCEEEECTT-CCEECTTTTTT-C
T ss_pred             ccccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc--ceEechhhhcC--CCCceEECCce-eeEeccceecc-C
Confidence            455667888888853 456566678888889998888765  22222223333  25666665433 33222333443 3


Q ss_pred             CCCEEEeecccCCCccccccccccEEECCCCcCccccCchhhcccccCeeeCCCCccccccchhhhccCCCCEEEeccCC
Q 004747          205 SLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNH  284 (732)
Q Consensus       205 ~L~~L~Ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~  284 (732)
                      +|+.+.+..+- ..                     .....+.++ +++.+.+..+ ++......+..+..++.+.+..+.
T Consensus       114 ~L~~i~lp~~~-~~---------------------i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~  169 (379)
T 4h09_A          114 DLDDFEFPGAT-TE---------------------IGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNN  169 (379)
T ss_dssp             CCSEEECCTTC-CE---------------------ECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTC
T ss_pred             CcccccCCCcc-cc---------------------ccccccccc-eeeeeeccce-eeccccchhccccccccccccccc
Confidence            56666665431 11                     111112221 2333333221 121223334445555555544332


Q ss_pred             CCCcCccccccCcCCcEEEccCCCCCCCCchhhhhcCCCCCccEEeCCCCcccCCCcccccCCCCCCEEeccCccCCCcc
Q 004747          285 LNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEI  364 (732)
Q Consensus       285 l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~  364 (732)
                      .......... .....           .....+....   .+..+.+....-. .....+..+..|+.+.+..+ +....
T Consensus       170 ~~~~~~~~~~-~~~~~-----------~~~~~~~~~~---~~~~~~~~~~~~~-i~~~~f~~~~~l~~i~~~~~-~~~i~  232 (379)
T 4h09_A          170 KNYVAENYVL-YNKNK-----------TILESYPAAK---TGTEFTIPSTVKT-VTAYGFSYGKNLKKITITSG-VTTLG  232 (379)
T ss_dssp             SSEEEETTEE-EETTS-----------SEEEECCTTC---CCSEEECCTTCCE-ECTTTTTTCSSCSEEECCTT-CCEEC
T ss_pred             ceeeccccee-ccccc-----------ceeccccccc---cccccccccceeE-Eeecccccccccceeeeccc-eeEEc
Confidence            2111000000 00000           0000011111   2333333322211 22334455566666666443 22233


Q ss_pred             ccccCCCCCCCEEEccCCcCccccCccccCCcCcceeecccccccccCcccccCCCCCcEEEcccCceeeeccccCCCCC
Q 004747          365 PARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLK  444 (732)
Q Consensus       365 p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~  444 (732)
                      ...+.++..|+.+.+..+ ++..-...+.++.+|+.+.+..+ +.......|.++++|+.+.+.++.++..-..+|.+|.
T Consensus       233 ~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~  310 (379)
T 4h09_A          233 DGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCV  310 (379)
T ss_dssp             TTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCT
T ss_pred             cccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCC
Confidence            344566667777776554 44344455666667777666433 3334445677788888888887777756667788888


Q ss_pred             CCCEEEccCCcccccchhhhhcCCCCCEEEcccCCCccccchhhhcCC
Q 004747          445 SLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQ  492 (732)
Q Consensus       445 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~  492 (732)
                      +|+.+++..+ ++.....+|.+|.+|+.+.+..+ ++..-..+|.++.
T Consensus       311 ~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~  356 (379)
T 4h09_A          311 KLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSS  356 (379)
T ss_dssp             TCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred             CCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence            8888888654 55445567788888888877654 4423344455543

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.69  E-value=2.4e-08  Score=104.53  Aligned_cols=84  Identities=24%  Similarity=0.275  Sum_probs=54.2

Q ss_pred             CCCCCcEEEcccCceeeeccccC---CCCCCCCEEEccCCcccccc----hhhhhcCCCCCEEEcccCCCccccchhhhc
Q 004747          418 ALDSLKILDISNNQISGEIPLTL---AGLKSLEIVDFSSNNLSGSL----NDAITKWTNLKYFSIARNKLSGNLPNWLFS  490 (732)
Q Consensus       418 ~l~~L~~L~L~~n~l~~~~p~~~---~~l~~L~~L~Ls~N~l~~~~----~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~  490 (732)
                      .+++|+.|++.+|.+.+..+..+   ..+++|++|+|+.|.+.+..    +..+..+++|+.|++++|.++...-..+..
T Consensus       250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~  329 (362)
T 2ra8_A          250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK  329 (362)
T ss_dssp             TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHH
T ss_pred             CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHH
Confidence            46788888888887765433222   24678888888888887643    333355788888888888776443333332


Q ss_pred             -CCCCCEEEccCCc
Q 004747          491 -FQAIQMMDFSTNK  503 (732)
Q Consensus       491 -~~~L~~L~ls~N~  503 (732)
                       +  ...+++++++
T Consensus       330 al--g~~~~~~~~~  341 (362)
T 2ra8_A          330 SL--PMKIDVSDSQ  341 (362)
T ss_dssp             HC--CSEEECCSBC
T ss_pred             Hc--CCEEEecCCc
Confidence             2  3557777765

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.57  E-value=2.1e-09  Score=106.67  Aligned_cols=80  Identities=28%  Similarity=0.328  Sum_probs=46.6

Q ss_pred             cCCCCCCEEECCCCCCCC--CCCccccCCCCCCEEeCCCCCCCCCcCCchhhhccc--CCcEEEeeCcccccccCc----
Q 004747          127 GGLSGLKTLDLSYNKFVG--VVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSM--NLEKLDFSFNSFCGEIPE----  198 (732)
Q Consensus       127 ~~l~~L~~L~Ls~n~l~~--~~p~~~~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~--~L~~L~Ls~n~l~~~~p~----  198 (732)
                      .++++|++|+|++|+|++  .+|..+..+++|++|+|++|. +.+.  ..+..+ .  +|++|+|++|.+.+.+|.    
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~~--~~l~~l-~~l~L~~L~L~~Npl~~~~~~~~~y  242 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE-LKSE--RELDKI-KGLKLEELWLDGNSLCDTFRDQSTY  242 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSC-CCSG--GGGGGG-TTSCCSEEECTTSTTGGGCSSHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCc-cCCc--hhhhhc-ccCCcceEEccCCcCccccCcchhH
Confidence            456777777777777776  334556667777777777773 3332  223333 3  566666666666654441    


Q ss_pred             ---ccCCCCCCCEEE
Q 004747          199 ---SLYYLKSLKHLD  210 (732)
Q Consensus       199 ---~l~~l~~L~~L~  210 (732)
                         .+..+++|+.||
T Consensus       243 ~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          243 ISAIRERFPKLLRLD  257 (267)
T ss_dssp             HHHHHHHCTTCCEES
T ss_pred             HHHHHHHCcccCeEC
Confidence               244556666554

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.28  E-value=3.4e-07  Score=86.20  Aligned_cols=121  Identities=18%  Similarity=0.155  Sum_probs=71.0

Q ss_pred             ccccCCCCCCCEEEccCC-cCccccCccccCCcCcceeecccccccccCcccccCCCCCcEEEcccCceeee----cccc
Q 004747          365 PARIGNLTYLQVIDLSHN-MLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGE----IPLT  439 (732)
Q Consensus       365 p~~l~~l~~L~~L~Ls~n-~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~----~p~~  439 (732)
                      ...+...+.|++|+|++| .+.......                    +...+...++|++|+|++|.+.+.    +...
T Consensus        29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~--------------------l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~   88 (185)
T 1io0_A           29 KRIQNNDPDLEEVNLNNIMNIPVPTLKA--------------------CAEALKTNTYVKKFSIVGTRSNDPVAFALAEM   88 (185)
T ss_dssp             HHHHTTCTTCCEEECTTCTTCCHHHHHH--------------------HHHHHTTCCSCCEEECTTSCCCHHHHHHHHHH
T ss_pred             HHHHhcCCCCCEEEecCCCCCCHHHHHH--------------------HHHHHHhCCCcCEEECcCCCCChHHHHHHHHH
Confidence            345566777888888777 665321111                    112234455666666666666532    2233


Q ss_pred             CCCCCCCCEEEccCCccccc----chhhhhcCCCCCEEEc--ccCCCccc----cchhhhcCCCCCEEEccCCcCc
Q 004747          440 LAGLKSLEIVDFSSNNLSGS----LNDAITKWTNLKYFSI--ARNKLSGN----LPNWLFSFQAIQMMDFSTNKFM  505 (732)
Q Consensus       440 ~~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~L--~~N~l~~~----~p~~~~~~~~L~~L~ls~N~l~  505 (732)
                      +...++|++|+|++|.+++.    +...+...++|++|+|  ++|.+...    +...+...++|+.|++++|.+.
T Consensus        89 L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A           89 LKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            34456677777777777643    2344555667777777  66777533    3344556677788888777764

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.28  E-value=2.6e-07  Score=87.07  Aligned_cols=122  Identities=18%  Similarity=0.193  Sum_probs=82.9

Q ss_pred             CcccccCCCCCCEEeccCc-cCCCc----cccccCCCCCCCEEEccCCcCccccCccccCCcCcceeecccccccccCcc
Q 004747          340 IPLKITELKSLQALFLSNN-LLIGE----IPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQP  414 (732)
Q Consensus       340 ~p~~l~~l~~L~~L~Ls~n-~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~  414 (732)
                      +...+...+.|++|+|++| .+...    +...+...++|++|+|++|.+.......+                    ..
T Consensus        28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l--------------------~~   87 (185)
T 1io0_A           28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFAL--------------------AE   87 (185)
T ss_dssp             HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHH--------------------HH
T ss_pred             HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHH--------------------HH
Confidence            3445677899999999999 88643    44556778899999999998864322111                    12


Q ss_pred             cccCCCCCcEEEcccCceeee----ccccCCCCCCCCEEEc--cCCcccccc----hhhhhcCCCCCEEEcccCCCc
Q 004747          415 ELDALDSLKILDISNNQISGE----IPLTLAGLKSLEIVDF--SSNNLSGSL----NDAITKWTNLKYFSIARNKLS  481 (732)
Q Consensus       415 ~~~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L--s~N~l~~~~----~~~~~~l~~L~~L~L~~N~l~  481 (732)
                      .+...++|++|+|++|.+.+.    +...+...++|++|+|  ++|.+++..    ...+...++|++|++++|.+.
T Consensus        88 ~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A           88 MLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            233445677777777777643    3445666677888888  778877532    344455678888888888775

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.28  E-value=2.9e-07  Score=91.15  Aligned_cols=64  Identities=28%  Similarity=0.318  Sum_probs=30.3

Q ss_pred             ccCCceeeccccccee--cCCc-ccCccCCcEEeCCCCcCcccCCcCCCCCC--CCCEEEcccCcceeeCC
Q 004747          583 LQGLEYLNLSFNFLDG--QVPG-LYRLRSLRALDLSHNSLTGQIPGNISSLQ--ELTLLNLSYNSFSGFVP  648 (732)
Q Consensus       583 l~~L~~L~Ls~N~l~~--~ip~-l~~l~~L~~LdLs~N~l~~~ip~~l~~l~--~L~~L~ls~N~l~g~ip  648 (732)
                      +++|+.|+|++|+|++  .+|. +..+++|+.|||++|+|++.  ..+..+.  .|++|++++|++++.+|
T Consensus       169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~  237 (267)
T 3rw6_A          169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR  237 (267)
T ss_dssp             CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred             CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence            4455555555555554  2233 33455555555555555543  1122222  55555555555555444

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.99  E-value=2.2e-06  Score=78.67  Aligned_cols=85  Identities=11%  Similarity=0.057  Sum_probs=48.8

Q ss_pred             CCCEEECCCCCCCCCCCccccCCCCCCEEeCCCCCCCCCcCCchhhhc---ccCCcEEEeeCcc-cccccCcccCCCCCC
Q 004747          131 GLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNF---SMNLEKLDFSFNS-FCGEIPESLYYLKSL  206 (732)
Q Consensus       131 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~p~~~~~l---~~~L~~L~Ls~n~-l~~~~p~~l~~l~~L  206 (732)
                      +|++||++++.++..--..+..+++|++|+|++|..++..--..+...   +++|++|++++|. ++..--..+..+++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L  141 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL  141 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence            455555555555544334455566666666666643333222223321   1357778887774 665444556778888


Q ss_pred             CEEEeeccc
Q 004747          207 KHLDLEKNN  215 (732)
Q Consensus       207 ~~L~Ls~n~  215 (732)
                      ++|+++++.
T Consensus       142 ~~L~L~~c~  150 (176)
T 3e4g_A          142 KYLFLSDLP  150 (176)
T ss_dssp             CEEEEESCT
T ss_pred             CEEECCCCC
Confidence            888888874

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.78  E-value=1.2e-05  Score=73.79  Aligned_cols=34  Identities=12%  Similarity=0.072  Sum_probs=14.0

Q ss_pred             CCCEEEcccCC-CccccchhhhcCCCCCEEEccCC
Q 004747          469 NLKYFSIARNK-LSGNLPNWLFSFQAIQMMDFSTN  502 (732)
Q Consensus       469 ~L~~L~L~~N~-l~~~~p~~~~~~~~L~~L~ls~N  502 (732)
                      +|++|+|++|. ++..--..+..+++|+.|+++++
T Consensus       115 ~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c  149 (176)
T 3e4g_A          115 SMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDL  149 (176)
T ss_dssp             HCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESC
T ss_pred             CCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCC
Confidence            34444444442 33222223334444444444444

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.67  E-value=0.0011  Score=61.82  Aligned_cols=34  Identities=18%  Similarity=0.232  Sum_probs=15.1

Q ss_pred             CCCcEEEcccCceeee----ccccCCCCCCCCEEEccC
Q 004747          420 DSLKILDISNNQISGE----IPLTLAGLKSLEIVDFSS  453 (732)
Q Consensus       420 ~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~Ls~  453 (732)
                      +.|+.|+|++|.|.+.    +...+..-+.|++|+|++
T Consensus        98 ~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n  135 (197)
T 1pgv_A           98 PSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADN  135 (197)
T ss_dssp             SSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCC
T ss_pred             CccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCC
Confidence            4455555555554432    112233334455555543

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.63  E-value=0.0019  Score=56.29  Aligned_cols=37  Identities=30%  Similarity=0.392  Sum_probs=24.5

Q ss_pred             CCcEEeCCCCcCcccCCcCCCCCCCCCEEEcccCcce
Q 004747          608 SLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFS  644 (732)
Q Consensus       608 ~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~  644 (732)
                      +|+.|||++|+|+...+..|..+++|++|+|++|++.
T Consensus        32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            4666666666666555556666677777777777664

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.62  E-value=0.0014  Score=61.04  Aligned_cols=91  Identities=13%  Similarity=0.107  Sum_probs=65.6

Q ss_pred             ccccCCCCCcEEEcccCceeeecc----ccCCCCCCCCEEEccCCcccccch----hhhhcCCCCCEEEcccC---CCcc
Q 004747          414 PELDALDSLKILDISNNQISGEIP----LTLAGLKSLEIVDFSSNNLSGSLN----DAITKWTNLKYFSIARN---KLSG  482 (732)
Q Consensus       414 ~~~~~l~~L~~L~L~~n~l~~~~p----~~~~~l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~L~~N---~l~~  482 (732)
                      ..+..-+.|+.|+|++|.+.+.-.    ..+..-+.|+.|+|++|.|.+...    ..+..-+.|++|+|++|   .+..
T Consensus        64 ~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~  143 (197)
T 1pgv_A           64 EAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGN  143 (197)
T ss_dssp             HHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCH
T ss_pred             HHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCH
Confidence            345566789999999999875433    334455889999999999985433    34455577999999875   3332


Q ss_pred             ----ccchhhhcCCCCCEEEccCCcC
Q 004747          483 ----NLPNWLFSFQAIQMMDFSTNKF  504 (732)
Q Consensus       483 ----~~p~~~~~~~~L~~L~ls~N~l  504 (732)
                          .+...+..-+.|+.|+++.|.+
T Consensus       144 ~g~~~ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          144 QVEMDMMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             HHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHHHHHHHhCCCcCeEeccCCCc
Confidence                2455677788999999987765

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.20  E-value=0.01  Score=51.55  Aligned_cols=54  Identities=24%  Similarity=0.329  Sum_probs=33.3

Q ss_pred             EEECCCCCCC-CcccccccCCCCCCEEECCCCCCCCCCCccccCCCCCCEEeCCCCC
Q 004747          110 FLVLSSNAFT-GRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNP  165 (732)
Q Consensus       110 ~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~  165 (732)
                      .++.+++.++ ..+|..+.  ++|++|+|++|+|+...+..|..+++|++|+|++|+
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP   66 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP   66 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence            3444444443 23343221  357777777777776666677777777777777774

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	732
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	7e-22
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	9e-18
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-14
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-11
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	6e-09
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-16
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-16
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-15
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	9e-11
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-09
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-09
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	6e-07
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	8e-06
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	4e-16
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-15
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	6e-15
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-10
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	5e-09
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-15
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	7e-15
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	8e-14
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-12
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	9e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-10
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	4e-06
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	1e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	3e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	1e-04
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-04
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	0.001
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-09
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	7e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-07
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-07
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	6e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.003
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	8e-09
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	4e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	4e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	7e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.001
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.003
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	6e-08
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	7e-08
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.001
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	5e-07
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	5e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	4e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.003
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.004
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	7e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	8e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	8e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	9e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	7e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	7e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	8e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.001
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.004
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	9e-06
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.001
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.004
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	3e-05
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	2e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	6e-05
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.002
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	1e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	2e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.002
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.003
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	0.002

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 94.8 bits (234), Expect = 7e-22
 Identities = 82/359 (22%), Positives = 125/359 (34%), Gaps = 61/359 (16%)

Query: 40  NLEDKASLLLFKSLVQDPTQKLSSWV-GSNCTN--WTGVACN--FQTGHVVSINLTDTSL 94
           N +DK +LL  K  + +PT  LSSW+  ++C N  W GV C+   QT  V +++L+  +L
Sbjct: 4   NPQDKQALLQIKKDLGNPTT-LSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNL 62

Query: 95  SG--QVHPRLCKLSFLEFLVLSSNA-FTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIM 151
                +   L  L +L FL +       G I      L+ L  L +++            
Sbjct: 63  PKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVS-------- 114

Query: 152 KLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDL 211
                                    +    L  LDFS+N+  G +P S+  L +L  +  
Sbjct: 115 ------------------GAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITF 156

Query: 212 EKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIAS 271
           + N ++G + D Y S   L          L        +   L   + S           
Sbjct: 157 DGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVL 216

Query: 272 LQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDL 331
             +  +    H   N              L                           LDL
Sbjct: 217 FGSDKNTQKIHLAKNSLAFDLGKVGLSKNLN-------------------------GLDL 251

Query: 332 SHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPL 390
            +NR  G +P  +T+LK L +L +S N L GEIP   GNL    V   ++N      PL
Sbjct: 252 RNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCGSPL 309

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 82.5 bits (202), Expect = 9e-18
 Identities = 69/283 (24%), Positives = 112/283 (39%), Gaps = 24/283 (8%)

Query: 345 TELKSLQALFLSNNLLIG--EIPARIGNLTYLQVIDLSHNM-LSGSIPLNIVGCFQLLAL 401
           T+   +  L LS   L     IP+ + NL YL  + +     L G IP  I    QL  L
Sbjct: 47  TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL 106

Query: 402 IVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLN 461
            + + N+SG I   L  + +L  LD S N +SG +P +++ L +L  + F  N +SG++ 
Sbjct: 107 YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166

Query: 462 DAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDGNFNFSLNFNK 521
           D+   ++ L                  F+   +  +D S N   G       +       
Sbjct: 167 DSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKI 226

Query: 522 SDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGTIPKGLF 581
                S+                                +  G+DL +N ++GT+P+GL 
Sbjct: 227 HLAKNSLAFDLG---------------------KVGLSKNLNGLDLRNNRIYGTLPQGLT 265

Query: 582 QLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIP 624
           QL+ L  LN+SFN L G++P    L+       ++N      P
Sbjct: 266 QLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 72.1 bits (175), Expect = 3e-14
 Identities = 65/251 (25%), Positives = 107/251 (42%), Gaps = 8/251 (3%)

Query: 425 LDISNNQISG--EIPLTLAGLKSLEIVDFSSN-NLSGSLNDAITKWTNLKYFSIARNKLS 481
           LD+S   +     IP +LA L  L  +      NL G +  AI K T L Y  I    +S
Sbjct: 55  LDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVS 114

Query: 482 GNLPNWLFSFQAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVI 541
           G +P++L   + +  +DFS N   G +P    +       +  G  +         S   
Sbjct: 115 GAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSK 174

Query: 542 RISVTAIDTNELSFNYQL----FSAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLD 597
             +   I  N L+          +   +DLS N+L G         +  + ++L+ N L 
Sbjct: 175 LFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA 234

Query: 598 GQVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVPWKQGYQKFP 657
             +  +   ++L  LDL +N + G +P  ++ L+ L  LN+S+N+  G +P     Q+F 
Sbjct: 235 FDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFD 294

Query: 658 G-AFAGNPNLC 667
             A+A N  LC
Sbjct: 295 VSAYANNKCLC 305

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 64.0 bits (154), Expect = 1e-11
 Identities = 56/269 (20%), Positives = 89/269 (33%), Gaps = 11/269 (4%)

Query: 176 GNFSMNLEKLDFSFNSFCG--EIPESLYYLKSLKHLDLEKN-NLTGNVHDFYQS---LLV 229
              +  +  LD S  +      IP SL  L  L  L +    NL G +         L  
Sbjct: 46  DTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHY 105

Query: 230 LNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEI 289
           L +     SG +P F +   +L  L    N++ G +P  I+SL  L  +    N ++  I
Sbjct: 106 LYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAI 165

Query: 290 SPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKS 349
                 F KL        +               A                   +     
Sbjct: 166 PDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAF----VDLSRNMLEGDASVLFGSDK 221

Query: 350 LQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLS 409
                      +     ++G    L  +DL +N + G++P  +     L +L V+ NNL 
Sbjct: 222 NTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC 281

Query: 410 GEIQPELDALDSLKILDISNNQISGEIPL 438
           GEI P+   L    +   +NN+     PL
Sbjct: 282 GEI-PQGGNLQRFDVSAYANNKCLCGSPL 309

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 55.9 bits (133), Expect = 6e-09
 Identities = 57/260 (21%), Positives = 100/260 (38%), Gaps = 28/260 (10%)

Query: 275 LTHLNLSHNHL--NYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLS 332
           + +L+LS  +L   Y I   L     L  L +   +    +        +   L  L ++
Sbjct: 52  VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGIN--NLVGPIPPAIAKLTQLHYLYIT 109

Query: 333 HNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNI 392
           H   SG IP  ++++K+L  L  S N L G +P  I +L  L  I    N +SG+IP + 
Sbjct: 110 HTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSY 169

Query: 393 VGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNN---------------------- 430
               +L   +  + N      P   A  +L  +D+S N                      
Sbjct: 170 GSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLA 229

Query: 431 -QISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLF 489
                     +   K+L  +D  +N + G+L   +T+   L   +++ N L G +P    
Sbjct: 230 KNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GG 288

Query: 490 SFQAIQMMDFSTNKFMGFIP 509
           + Q   +  ++ NK +   P
Sbjct: 289 NLQRFDVSAYANNKCLCGSP 308

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 80.4 bits (197), Expect = 1e-16
 Identities = 75/393 (19%), Positives = 122/393 (31%), Gaps = 47/393 (11%)

Query: 128 GLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNP--ELGGVFPGWVGNFSMNLEKL 185
            L+      L        V      L  +  L         + GV        + NL ++
Sbjct: 20  ALAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIKSIDGV-----EYLN-NLTQI 71

Query: 186 DFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFA 245
           +FS N      P  L  L  L  + +  N +         + L      N     +    
Sbjct: 72  NFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLK 129

Query: 246 ASAMSLTVLKLDNN---------------SVVGGIPTCIASLQALTHLNLSHNHLNYEIS 290
                  +    N                   G   T +  L  LT L       N    
Sbjct: 130 NLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSD 189

Query: 291 PRLVF-FEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKS 349
             ++     L  L  + N +S   P  I        L  L L+ N+        +  L +
Sbjct: 190 ISVLAKLTNLESLIATNNQISDITPLGILTN-----LDELSLNGNQLKD--IGTLASLTN 242

Query: 350 LQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLS 409
           L  L L+NN +    P  +  LT L  + L  N +S   PL  +     L L  N     
Sbjct: 243 LTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLE-- 298

Query: 410 GEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTN 469
                 +  L +L  L +  N IS   P  ++ L  L+ + F++N +S     ++   TN
Sbjct: 299 --DISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSDV--SSLANLTN 352

Query: 470 LKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTN 502
           + + S   N++S   P  L +   I  +  +  
Sbjct: 353 INWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 80.4 bits (197), Expect = 1e-16
 Identities = 67/391 (17%), Positives = 118/391 (30%), Gaps = 51/391 (13%)

Query: 84  VVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFV 143
            +   L  T+++  V      L  +  L                 L+ L  ++ S N+  
Sbjct: 24  KMKTVLGKTNVTDTV--SQTDLDQVTTLQADRLGIKS--IDGVEYLNNLTQINFSNNQLT 79

Query: 144 GVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYL 203
            + P  +  L  L ++++  N          + N +      +   +             
Sbjct: 80  DITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP-------LKN 130

Query: 204 KSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVG 263
            +  +     +N   ++        +  L        L   A       +    N     
Sbjct: 131 LTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVS-- 188

Query: 264 GIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEK 323
              + +A L  L  L  ++N ++            L  L L+ N L              
Sbjct: 189 -DISVLAKLTNLESLIATNNQISDITPLG--ILTNLDELSLNGNQLKDIGTLASLTN--- 242

Query: 324 AGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIP------------------ 365
             L  LDL++N+ S   PL  + L  L  L L  N +    P                  
Sbjct: 243 --LTDLDLANNQISNLAPL--SGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLE 298

Query: 366 --ARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLK 423
             + I NL  L  + L  N +S   P++     +L  L   NN +S      L  L ++ 
Sbjct: 299 DISPISNLKNLTYLTLYFNNISDISPVS--SLTKLQRLFFANNKVSDV--SSLANLTNIN 354

Query: 424 ILDISNNQISGEIPLTLAGLKSLEIVDFSSN 454
            L   +NQIS   P  LA L  +  +  +  
Sbjct: 355 WLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 76.2 bits (186), Expect = 2e-15
 Identities = 62/396 (15%), Positives = 123/396 (31%), Gaps = 47/396 (11%)

Query: 254 LKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPL 313
             L   +V   +      L  +T L      +   I   + +   L  ++ S N L+   
Sbjct: 27  TVLGKTNVTDTVS--QTDLDQVTTLQADRLGIK-SIDG-VEYLNNLTQINFSNNQLTDIT 82

Query: 314 P----SKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIG 369
           P    +K+         +         +    L +   +      L N   +  +     
Sbjct: 83  PLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSN 142

Query: 370 NLTYLQVIDLSHNMLSGSIPLNIVGCFQLLAL----IVNNNNLSGEIQPELDALDSLKIL 425
            ++ +  +    ++   S    +     L  L     ++ ++        L  L +L+ L
Sbjct: 143 TISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESL 202

Query: 426 DISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLP 485
             +NNQIS   PL +    +L+ +  + N L       +   TNL    +A N++S   P
Sbjct: 203 IATNNQISDITPLGIL--TNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP 258

Query: 486 NWLFSFQAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISV 545
             L     +  +    N+     P        N   ++      +    L     +    
Sbjct: 259 --LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYL---- 312

Query: 546 TAIDTNELSFNYQLFSAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYR 605
                                L  N +    P  +  L  L+ L  + N +   V  L  
Sbjct: 313 --------------------TLYFNNISDISP--VSSLTKLQRLFFANNKVSD-VSSLAN 349

Query: 606 LRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYN 641
           L ++  L   HN ++   P  +++L  +T L L+  
Sbjct: 350 LTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 61.9 bits (149), Expect = 9e-11
 Identities = 54/356 (15%), Positives = 111/356 (31%), Gaps = 40/356 (11%)

Query: 324 AGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNM 383
           A  +   L     +  +    T+L  +  L       I  I   +  L  L  I+ S+N 
Sbjct: 22  AEKMKTVLGKTNVTDTVSQ--TDLDQVTTLQADRLG-IKSIDG-VEYLNNLTQINFSNNQ 77

Query: 384 LSGSIPL----NIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLT 439
           L+   PL     +V        I +   L+         L + +I DI   +    +   
Sbjct: 78  LTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRL 137

Query: 440 LAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFS-------IARNKLSGNLPNWLFSFQ 492
                ++  +   S   S        + T+LK  +       +  +    +  + L    
Sbjct: 138 ELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLT 197

Query: 493 AIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNE 552
            ++ +  + N+     P G        + +            L     + ++   I  + 
Sbjct: 198 NLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQI--SN 255

Query: 553 LSFNYQLFSAVGMDLSDNLLHGTIP--------------------KGLFQLQGLEYLNLS 592
           L+    L     + L  N +    P                      +  L+ L YL L 
Sbjct: 256 LAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLY 315

Query: 593 FNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVP 648
           FN +   +  +  L  L+ L  ++N ++     ++++L  +  L+  +N  S   P
Sbjct: 316 FNNISD-ISPVSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP 368

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 58.5 bits (140), Expect = 1e-09
 Identities = 62/364 (17%), Positives = 117/364 (32%), Gaps = 45/364 (12%)

Query: 181 NLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTG-NVHDFYQSLLVLNLGSNRFSG 239
              K      +    + ++   L  +  L  ++  +   +  ++  +L  +N  +N+ + 
Sbjct: 23  EKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTD 80

Query: 240 TLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKL 299
             P    +   L  + ++NN +    P    +      L  +       +          
Sbjct: 81  ITPL--KNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLE 138

Query: 300 ----LLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKIT------ELKS 349
                + D+S       L              L +L+          K++      +L +
Sbjct: 139 LSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTN 198

Query: 350 LQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLS 409
           L++L  +NN +    P  I   T L  + L+ N L       +     L  L + NN +S
Sbjct: 199 LESLIATNNQISDITPLGIL--TNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQIS 254

Query: 410 GEIQPELDALDSLKILDISNNQISGEIPL--------------------TLAGLKSLEIV 449
                 L  L  L  L +  NQIS   PL                     ++ LK+L  +
Sbjct: 255 NLA--PLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYL 312

Query: 450 DFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIP 509
               NN+S      ++  T L+    A NK+S    + L +   I  +    N+     P
Sbjct: 313 TLYFNNISDIS--PVSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP 368

Query: 510 DGNF 513
             N 
Sbjct: 369 LANL 372

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 56.9 bits (136), Expect = 4e-09
 Identities = 54/333 (16%), Positives = 118/333 (35%), Gaps = 19/333 (5%)

Query: 350 LQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLS 409
           L +  ++ +  I +I      L       L    ++ ++    +   Q+  L  +   + 
Sbjct: 1   LGSATITQDTPINQIFTD-TALAEKMKTVLGKTNVTDTVSQTDLD--QVTTLQADRLGIK 57

Query: 410 GEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTN 469
                 ++ L++L  ++ SNNQ++   P  L  L  L        ++  + N        
Sbjct: 58  S--IDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLV-------DILMNNNQIADITPL 106

Query: 470 LKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMP 529
               ++    L  N    +   + +  ++               +   +  +   G  + 
Sbjct: 107 ANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVT 166

Query: 530 AKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGTIPKGLFQLQGLEYL 589
               +   + + R+ +++   +++S   +L +   +  ++N +    P G+     L+ L
Sbjct: 167 DLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGIL--TNLDEL 224

Query: 590 NLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVPW 649
           +L+ N L   +  L  L +L  LDL++N ++   P  +S L +LT L L  N  S   P 
Sbjct: 225 SLNGNQLKD-IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPL 281

Query: 650 KQGYQKFPGAFAGNPNLCLESSHGECNRTSLPL 682
                        N    +       N T L L
Sbjct: 282 AGLTALTNLELNENQLEDISPISNLKNLTYLTL 314

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 50.0 bits (118), Expect = 6e-07
 Identities = 35/193 (18%), Positives = 63/193 (32%), Gaps = 31/193 (16%)

Query: 64  WVGSNCTNWTGVACNFQTGHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRIS 123
            + +     + +       ++  ++L    L       L  L+ L  L L++N  +    
Sbjct: 201 SLIATNNQISDITPLGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP 258

Query: 124 TCFGGLSGLKTLDLSYNKFVGVVP--------------------DAIMKLRNLRELILKG 163
               GL+ L  L L  N+   + P                      I  L+NL  L L  
Sbjct: 259 --LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYF 316

Query: 164 NPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDF 223
           N  +  + P  V + +  L++L F+ N        SL  L ++  L    N ++      
Sbjct: 317 N-NISDISP--VSSLT-KLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTPLA 370

Query: 224 Y-QSLLVLNLGSN 235
               +  L L   
Sbjct: 371 NLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 46.1 bits (108), Expect = 8e-06
 Identities = 14/102 (13%), Positives = 38/102 (37%), Gaps = 6/102 (5%)

Query: 63  SWVGSNCTNWTGVACNFQTGHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRI 122
           + +  N      ++      ++  + L   ++S      +  L+ L+ L  ++N  +   
Sbjct: 288 TNLELNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRLFFANNKVSD-- 343

Query: 123 STCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGN 164
            +    L+ +  L   +N+   + P  +  L  + +L L   
Sbjct: 344 VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.2 bits (188), Expect = 4e-16
 Identities = 53/282 (18%), Positives = 80/282 (28%), Gaps = 27/282 (9%)

Query: 177 NFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNR 236
                 +++    N        S    ++L  L L  N L       +  L +L      
Sbjct: 29  GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLS 88

Query: 237 FSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFF 296
            +  L                        P     L  L  L+L    L           
Sbjct: 89  DNAQLRSV--------------------DPATFHGLGRLHTLHLDRCGLQELGPGLFRGL 128

Query: 297 EKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLS 356
             L  L L  N L                L  L L  NR S         L SL  L L 
Sbjct: 129 AALQYLYLQDNALQALPDDTFRDLGN---LTHLFLHGNRISSVPERAFRGLHSLDRLLLH 185

Query: 357 NNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPEL 416
            N +    P    +L  L  + L  N LS      +     L  L +N+N    + +   
Sbjct: 186 QNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA-R 244

Query: 417 DALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSG 458
                L+    S++++   +P  LAG     +   ++N+L G
Sbjct: 245 PLWAWLQKFRGSSSEVPCSLPQRLAGRD---LKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.2 bits (183), Expect = 2e-15
 Identities = 48/260 (18%), Positives = 79/260 (30%), Gaps = 11/260 (4%)

Query: 130 SGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSF 189
           +  + + L  N+   V   +    RNL  L L  N         + G   +    L  + 
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 190 NSFCGEIPESLYYLKSLKHLDLE---KNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAA 246
                  P + + L  L  L L+      L   +     +L  L L  N           
Sbjct: 92  QLRS-VDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFR 150

Query: 247 SAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSF 306
              +LT L L  N +          L +L  L L  N + +          +L+ L L  
Sbjct: 151 DLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA 210

Query: 307 NDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPA 366
           N+                 L  L L+ N +  +          LQ    S++ +   +P 
Sbjct: 211 NN---LSALPTEALAPLRALQYLRLNDNPWVCDCRA-RPLWAWLQKFRGSSSEVPCSLPQ 266

Query: 367 RIGNLTYLQVIDLSHNMLSG 386
           R+       +  L+ N L G
Sbjct: 267 RLAG---RDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.7 bits (179), Expect = 6e-15
 Identities = 52/322 (16%), Positives = 90/322 (27%), Gaps = 51/322 (15%)

Query: 325 GLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNML 384
             V            +P+ I    + Q +FL  N +     A       L ++ L  N+L
Sbjct: 12  PKVTTSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVL 68

Query: 385 SGSIPLNIVGCFQLLALIVNNNNLSGEIQP-ELDALDSLKILDISNNQISGEIPLTLAGL 443
           +        G   L  L +++N     + P     L  L  L +    +    P    GL
Sbjct: 69  ARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGL 128

Query: 444 KSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNK 503
            +L+ +    N L    +D      NL +  +  N++S           ++  +    N+
Sbjct: 129 AALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNR 188

Query: 504 FMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAV 563
                P                                                 L   +
Sbjct: 189 VAHVHPH--------------------------------------------AFRDLGRLM 204

Query: 564 GMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQI 623
            + L  N L     + L  L+ L+YL L+ N              L+    S + +   +
Sbjct: 205 TLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSL 264

Query: 624 PGNISSLQELTLLNLSYNSFSG 645
           P     L    L  L+ N   G
Sbjct: 265 P---QRLAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.8 bits (143), Expect = 3e-10
 Identities = 51/247 (20%), Positives = 84/247 (34%), Gaps = 7/247 (2%)

Query: 265 IPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKA 324
           +P  I +      + L  N +++  +     F     L + +   +       A  T  A
Sbjct: 26  VPVGIPAA--SQRIFLHGNRISHVPAA---SFRACRNLTILWLHSNVLARIDAAAFTGLA 80

Query: 325 GLVLLDLSHNRFSGEI-PLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNM 383
            L  LDLS N     + P     L  L  L L    L    P     L  LQ + L  N 
Sbjct: 81  LLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA 140

Query: 384 LSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGL 443
           L             L  L ++ N +S   +     L SL  L +  N+++   P     L
Sbjct: 141 LQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDL 200

Query: 444 KSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNK 503
             L  +   +NNLS    +A+     L+Y  +  N    +       +  +Q    S+++
Sbjct: 201 GRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPL-WAWLQKFRGSSSE 259

Query: 504 FMGFIPD 510
               +P 
Sbjct: 260 VPCSLPQ 266

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.0 bits (133), Expect = 5e-09
 Identities = 52/326 (15%), Positives = 95/326 (29%), Gaps = 54/326 (16%)

Query: 297 EKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLS 356
           E  +        L   +P  I   +++     + L  NR S          ++L  L+L 
Sbjct: 11  EPKVTTSCPQQGLQA-VPVGIPAASQR-----IFLHGNRISHVPAASFRACRNLTILWLH 64

Query: 357 NNLLIGEIPARIGNLTYLQVIDLSHNMLSGSI-PLNIVGCFQLLALIVNNNNLSGEIQPE 415
           +N+L     A    L  L+ +DLS N    S+ P    G  +L  L ++   L       
Sbjct: 65  SNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGL 124

Query: 416 LDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSI 475
              L +L+ L + +N +      T   L +L  +    N +S     A     +L    +
Sbjct: 125 FRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLL 184

Query: 476 ARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVL 535
            +N+++   P+       +  +    N       +                         
Sbjct: 185 HQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPL-------------------- 224

Query: 536 PRSMVIRISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNF 595
                                    +   + L+DN               L+    S + 
Sbjct: 225 ------------------------RALQYLRLNDNPWVCDCRARPL-WAWLQKFRGSSSE 259

Query: 596 LDGQVPGLYRLRSLRALDLSHNSLTG 621
           +   +P   RL       L+ N L G
Sbjct: 260 VPCSLPQ--RLAGRDLKRLAANDLQG 283

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 76.2 bits (186), Expect = 1e-15
 Identities = 59/282 (20%), Positives = 92/282 (32%), Gaps = 19/282 (6%)

Query: 108 LEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPEL 167
              L L +N  T      F  L  L TL L  NK   + P A   L  L  L L  N +L
Sbjct: 33  TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN-QL 91

Query: 168 GGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDL--EKNNLTGNVHDFYQ 225
             +           L++L    N            L  +  ++L       +G  +  +Q
Sbjct: 92  KELPEKMP----KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ 147

Query: 226 SLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHL 285
            +  L+      +           SLT L LD N +       +  L  L  L LS N +
Sbjct: 148 GMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSI 207

Query: 286 NYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSG------E 339
           +   +  L     L  L L+ N L            +   + ++ L +N  S        
Sbjct: 208 SAVDNGSLANTPHLRELHLNNNKLVKVPGGL----ADHKYIQVVYLHNNNISAIGSNDFC 263

Query: 340 IPLKITELKSLQALFLSNN-LLIGEI-PARIGNLTYLQVIDL 379
            P   T+  S   + L +N +   EI P+    +     + L
Sbjct: 264 PPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 73.9 bits (180), Expect = 7e-15
 Identities = 47/315 (14%), Positives = 81/315 (25%), Gaps = 44/315 (13%)

Query: 326 LVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLS 385
             LLDL +N+ +         LK+L  L L NN +    P     L  L+ + LS N L 
Sbjct: 33  TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 92

Query: 386 GSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKS 445
             +P  +    Q L +  N      +          +  L  +  + SG       G+K 
Sbjct: 93  -ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK 151

Query: 446 LEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFM 505
           L  +  +  N++           +L    +  NK++      L     +  +  S N   
Sbjct: 152 LSYIRIADTNITTIPQGL---PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS 208

Query: 506 GFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVGM 565
                   N             +                                    +
Sbjct: 209 AVDNGSLANTPHLRELHLNNNKLVKVPG---------------------GLADHKYIQVV 247

Query: 566 DLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQ--I 623
            L +N +   I    F   G                   +  S   + L  N +      
Sbjct: 248 YLHNNNIS-AIGSNDFCPPGY----------------NTKKASYSGVSLFSNPVQYWEIQ 290

Query: 624 PGNISSLQELTLLNL 638
           P     +     + L
Sbjct: 291 PSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 70.5 bits (171), Expect = 8e-14
 Identities = 50/280 (17%), Positives = 96/280 (34%), Gaps = 9/280 (3%)

Query: 373 YLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQI 432
           +L+V+  S   L   +P ++     LL L   NN ++     +   L +L  L + NN+I
Sbjct: 11  HLRVVQCSDLGLE-KVPKDLPPDTALLDL--QNNKITEIKDGDFKNLKNLHTLILINNKI 67

Query: 433 SGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQ 492
           S   P   A L  LE +  S N L             L+       K+  ++ N L    
Sbjct: 68  SKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMI 127

Query: 493 AIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNE 552
            +++                    L++ +            + P    + +    I   +
Sbjct: 128 VVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVD 187

Query: 553 LSFNYQLFSAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRAL 612
            +    L +   + LS N +       L     L  L+L+ N L     GL   + ++ +
Sbjct: 188 AASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVV 247

Query: 613 DLSHNSLTG------QIPGNISSLQELTLLNLSYNSFSGF 646
            L +N+++         PG  +     + ++L  N    +
Sbjct: 248 YLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYW 287

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 65.8 bits (159), Expect = 3e-12
 Identities = 43/231 (18%), Positives = 80/231 (34%), Gaps = 6/231 (2%)

Query: 421 SLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKL 480
              +LD+ NN+I+         LK+L  +   +N +S     A      L+   +++N+L
Sbjct: 32  DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 91

Query: 481 SGNLPNWLFSFQAIQMMDFSTNKFMGFIPDGNFNF---SLNFNKSDIGRSMPAKSFVLPR 537
                    + Q +++ +    K    + +G        L  N              + +
Sbjct: 92  KELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK 151

Query: 538 SMVIRISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLD 597
              IRI+ T I T        L     + L  N +       L  L  L  L LSFN + 
Sbjct: 152 LSYIRIADTNITTIPQGLPPSLTE---LHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS 208

Query: 598 GQVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVP 648
               G             +N+   ++PG ++  + + ++ L  N+ S    
Sbjct: 209 AVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGS 259

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 42.7 bits (99), Expect = 9e-05
 Identities = 35/189 (18%), Positives = 61/189 (32%), Gaps = 15/189 (7%)

Query: 59  QKLSSWVGSNCTNWTGVACNFQTGHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAF 118
           Q+L             V        VV +       SG  +     +  L ++ ++    
Sbjct: 103 QELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI 162

Query: 119 TGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNF 178
           T   +   G    L  L L  NK   V   ++  L NL +L L  N              
Sbjct: 163 T---TIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSL--AN 217

Query: 179 SMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTG---------NVHDFYQSLLV 229
           + +L +L  + N    ++P  L   K ++ + L  NN++            +    S   
Sbjct: 218 TPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSG 276

Query: 230 LNLGSNRFS 238
           ++L SN   
Sbjct: 277 VSLFSNPVQ 285

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.1 bits (144), Expect = 2e-10
 Identities = 35/279 (12%), Positives = 89/279 (31%), Gaps = 19/279 (6%)

Query: 375 QVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISG 434
           Q +DL+   L   +   ++    ++A     + +   +  E  +   ++ +D+SN+ I  
Sbjct: 3   QTLDLTGKNLHPDVTGRLLSQ-GVIAFRCPRSFMDQPL-AEHFSPFRVQHMDLSNSVIEV 60

Query: 435 E-IPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSI------------ARNKLS 481
             +   L+    L+ +      LS  + + + K +NL   ++                  
Sbjct: 61  STLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSC 120

Query: 482 GNLPNWLFSFQAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVI 541
             L     S+                           + K+     +       P  + +
Sbjct: 121 SRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHL 180

Query: 542 RISVTAIDTNELSFNYQLFSAVG-MDLSD-NLLHGTIPKGLFQLQGLEYLNLSFNFLDGQ 599
            +S + +  N+    +   + +  + LS    +       L ++  L+ L +     DG 
Sbjct: 181 DLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGT 240

Query: 600 VPGLYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNL 638
           +  L    +L  L ++ +  T      I + +   +  +
Sbjct: 241 LQLL--KEALPHLQINCSHFTTIARPTIGNKKNQEIWGI 277

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.0 bits (110), Expect = 4e-06
 Identities = 20/109 (18%), Positives = 42/109 (38%), Gaps = 6/109 (5%)

Query: 276 THLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNR 335
             L+L+  +L+ +++ RL+  + ++      + +  PL    +       +  +DLS++ 
Sbjct: 3   QTLDLTGKNLHPDVTGRLL-SQGVIAFRCPRSFMDQPLAEHFSPFR----VQHMDLSNSV 57

Query: 336 FSGEIPLKITE-LKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNM 383
                   I      LQ L L    L   I   +   + L  ++LS   
Sbjct: 58  IEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCS 106

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.1 bits (105), Expect = 1e-05
 Identities = 39/253 (15%), Positives = 84/253 (33%), Gaps = 16/253 (6%)

Query: 230 LNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEI 289
           L+L        +     S   +   +   + +   +    +  + + H++LS++ +    
Sbjct: 5   LDLTGKNLHPDVTGRLLSQ-GVIAFRCPRSFMDQPLAEHFSPFR-VQHMDLSNSVIEVST 62

Query: 290 SPRLV-FFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELK 348
              ++    KL  L L    LS P+ + +A+ +    LV L+LS      E  L+     
Sbjct: 63  LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSN---LVRLNLSGCSGFSEFALQTLLSS 119

Query: 349 SLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQ---------LL 399
             +   L+ +         +          ++   LSG                    + 
Sbjct: 120 CSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVH 179

Query: 400 ALIVNNNNLSGEIQPELDALDSLKILDISN-NQISGEIPLTLAGLKSLEIVDFSSNNLSG 458
             + ++  L  +   E   L+ L+ L +S    I  E  L L  + +L+ +        G
Sbjct: 180 LDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDG 239

Query: 459 SLNDAITKWTNLK 471
           +L        +L+
Sbjct: 240 TLQLLKEALPHLQ 252

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.9 bits (102), Expect = 3e-05
 Identities = 18/86 (20%), Positives = 37/86 (43%), Gaps = 2/86 (2%)

Query: 565 MDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTG-QI 623
           +DL+   LH  +   L   QG+       +F+D  +   +    ++ +DLS++ +    +
Sbjct: 5   LDLTGKNLHPDVTGRLLS-QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTL 63

Query: 624 PGNISSLQELTLLNLSYNSFSGFVPW 649
            G +S   +L  L+L     S  +  
Sbjct: 64  HGILSQCSKLQNLSLEGLRLSDPIVN 89

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.4 bits (98), Expect = 1e-04
 Identities = 43/268 (16%), Positives = 86/268 (32%), Gaps = 14/268 (5%)

Query: 207 KHLDLEKNNLTGNV--HDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSV-VG 263
           + LDL   NL  +V      Q ++      +     L     S   +  + L N+ + V 
Sbjct: 3   QTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHF-SPFRVQHMDLSNSVIEVS 61

Query: 264 GIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEK 323
            +   ++    L +L+L    L+  I   L     L+ L+LS          +   ++  
Sbjct: 62  TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS 121

Query: 324 A-----GLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVID 378
                      D +       +      +  L       NL   ++   +     L  +D
Sbjct: 122 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 181

Query: 379 LSHNMLSGSIPLNIVGCFQLLALIV--NNNNLSGEIQPELDALDSLKILDISNNQISGEI 436
           LS +++  +           L  +      ++  E   EL  + +LK L +      G +
Sbjct: 182 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTL 241

Query: 437 PLTLAGLKSLEIVDFSSNNLSGSLNDAI 464
            L    L  L+I   + ++ +      I
Sbjct: 242 QLLKEALPHLQI---NCSHFTTIARPTI 266

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.6 bits (96), Expect = 2e-04
 Identities = 40/255 (15%), Positives = 84/255 (32%), Gaps = 15/255 (5%)

Query: 133 KTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSF 192
           +TLDL+        PD   +L +   +  +  P      P         ++ +D S +  
Sbjct: 3   QTLDLTGKNLH---PDVTGRLLSQGVIAFR-CPRSFMDQPLAEHFSPFRVQHMDLSNSVI 58

Query: 193 CGE-IPESLYYLKSLKHLDLEKNNLTGNVHDF---YQSLLVLNLGSNRFSGTLPCFAASA 248
               +   L     L++L LE   L+  + +      +L+ LNL               +
Sbjct: 59  EVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLS 118

Query: 249 MSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLN------YEISPRLVFFEKLLLL 302
               + +L+ +         +    A     ++  +L+       +     +      L+
Sbjct: 119 SCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLV 178

Query: 303 DLSFNDLSGPLPSKIAQTTEKAGLVLLDLSH-NRFSGEIPLKITELKSLQALFLSNNLLI 361
            L  +D          +  +   L  L LS       E  L++ E+ +L+ L +   +  
Sbjct: 179 HLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPD 238

Query: 362 GEIPARIGNLTYLQV 376
           G +      L +LQ+
Sbjct: 239 GTLQLLKEALPHLQI 253

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.3 bits (90), Expect = 0.001
 Identities = 42/260 (16%), Positives = 88/260 (33%), Gaps = 19/260 (7%)

Query: 178 FSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGN----VHDFYQSLLVLNLG 233
            S  +       +     + E     + ++H+DL  + +  +    +      L  L+L 
Sbjct: 21  LSQGVIAFRCPRSFMDQPLAEHFSPFR-VQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE 79

Query: 234 SNRFSGTLPCFAASAMSLTVLKLD--NNSVVGGIPTCIASLQALTHLNL------SHNHL 285
             R S  +    A   +L  L L   +      + T ++S   L  LNL      +  H+
Sbjct: 80  GLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHV 139

Query: 286 NYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKIT 345
              ++       +L L     N     L + + +        L          +   +  
Sbjct: 140 QVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLV--HLDLSDSVMLKNDCFQEFF 197

Query: 346 ELKSLQALFLSN-NLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVN 404
           +L  LQ L LS    +I E    +G +  L+ + +   +  G++ L          L +N
Sbjct: 198 QLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPH---LQIN 254

Query: 405 NNNLSGEIQPELDALDSLKI 424
            ++ +   +P +    + +I
Sbjct: 255 CSHFTTIARPTIGNKKNQEI 274

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.6 bits (135), Expect = 3e-09
 Identities = 31/206 (15%), Positives = 60/206 (29%), Gaps = 4/206 (1%)

Query: 415 ELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFS 474
           E+  + S   ++     ++  +P  L   K   I+  S N L       +  +T L   +
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 475 IARNKLSGNLP-NWLFSFQAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSF 533
           + R +L+       L     + +                    L+ + + +         
Sbjct: 62  LDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALR 121

Query: 534 VLPRSMVIRISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSF 593
            L     + +    + T              + L++N L       L  L+ L+ L L  
Sbjct: 122 GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQE 181

Query: 594 NFLDGQVPGLYRLRSLRALDLSHNSL 619
           N L     G +    L    L  N  
Sbjct: 182 NSLYTIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.0 bits (123), Expect = 7e-08
 Identities = 42/182 (23%), Positives = 60/182 (32%), Gaps = 4/182 (2%)

Query: 177 NFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNR 236
           +   +   L  S N        +L     L  L+L++  LT    D    +L     S+ 
Sbjct: 28  DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHN 87

Query: 237 FSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFF 296
              +LP    +  +LTVL +  N +       +  L  L  L L  N L       L   
Sbjct: 88  QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPT 147

Query: 297 EKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLS 356
            KL  L L+ N+L+      +        L  L L  N     IP        L   FL 
Sbjct: 148 PKLEKLSLANNNLTELPAGLLNGLEN---LDTLLLQENSLY-TIPKGFFGSHLLPFAFLH 203

Query: 357 NN 358
            N
Sbjct: 204 GN 205

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.9 bits (120), Expect = 2e-07
 Identities = 34/179 (18%), Positives = 45/179 (25%), Gaps = 3/179 (1%)

Query: 108 LEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPEL 167
              L LS N             + L  L+L   +           L  L  L L  N   
Sbjct: 33  TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT--KLQVDGTLPVLGTLDLSHNQLQ 90

Query: 168 GGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSL 227
                G        L+       S        L  L+ L     E   L   +      L
Sbjct: 91  SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150

Query: 228 LVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLN 286
             L+L +N  +           +L  L L  NS+   IP        L    L  N   
Sbjct: 151 EKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.7 bits (117), Expect = 4e-07
 Identities = 31/178 (17%), Positives = 43/178 (24%), Gaps = 3/178 (1%)

Query: 132 LKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNS 191
              L LS N         +M    L +L L           G +          +   + 
Sbjct: 33  TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSL 92

Query: 192 FCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSL 251
                      +  +    L   +L          L  L L  N      P        L
Sbjct: 93  PLLGQTLPALTVLDVSFNRL--TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150

Query: 252 TVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDL 309
             L L NN++       +  L+ L  L L  N   Y I         L    L  N  
Sbjct: 151 EKLSLANNNLTELPAGLLNGLENLDTLLLQENS-LYTIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.8 bits (112), Expect = 2e-06
 Identities = 41/196 (20%), Positives = 73/196 (37%), Gaps = 7/196 (3%)

Query: 321 TEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLS 380
           ++ A  + ++      +  +P  +   K    L LS NLL     A +   T L  ++L 
Sbjct: 7   SKVASHLEVNCDKRNLT-ALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLD 63

Query: 381 HNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTL 440
                    L + G   +L  +  ++N    +      L +L +LD+S N+++      L
Sbjct: 64  RAE---LTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGAL 120

Query: 441 AGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFS 500
            GL  L+ +    N L       +T    L+  S+A N L+      L   + +  +   
Sbjct: 121 RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQ 180

Query: 501 TNKFMGFIPDGNFNFS 516
            N     IP G F   
Sbjct: 181 ENSLY-TIPKGFFGSH 195

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.1 bits (92), Expect = 6e-04
 Identities = 39/181 (21%), Positives = 60/181 (33%), Gaps = 7/181 (3%)

Query: 250 SLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDL 309
             T+L L  N +       +     LT LNL    L             L +L       
Sbjct: 32  DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ-----VDGTLPVLGTLDLSH 86

Query: 310 SGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIG 369
           +    S          L +LD+S NR +      +  L  LQ L+L  N L    P  + 
Sbjct: 87  NQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLT 145

Query: 370 NLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISN 429
               L+ + L++N L+      + G   L  L++  N+L   I         L    +  
Sbjct: 146 PTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHG 204

Query: 430 N 430
           N
Sbjct: 205 N 205

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (86), Expect = 0.003
 Identities = 14/70 (20%), Positives = 20/70 (28%), Gaps = 2/70 (2%)

Query: 582 QLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYN 641
           ++     +N     L    P L   +    L LS N L       +     LT LNL   
Sbjct: 8   KVASHLEVNCDKRNLTALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA 65

Query: 642 SFSGFVPWKQ 651
             +       
Sbjct: 66  ELTKLQVDGT 75

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 55.6 bits (132), Expect = 8e-09
 Identities = 58/318 (18%), Positives = 95/318 (29%), Gaps = 21/318 (6%)

Query: 329 LDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSI 388
           L+L++   S  +P        L++L  S N L  E+P    +L  L V + +   LS   
Sbjct: 43  LELNNLGLS-SLP---ELPPHLESLVASCNSL-TELPELPQSLKSLLVDNNNLKALSDLP 97

Query: 389 PLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEI 448
           PL            +  +N   E  PEL     LKI+D+ NN +     L  +       
Sbjct: 98  PLLE---------YLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAG 148

Query: 449 VDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFI 508
            +             +T              L  +L + +     ++ +    N      
Sbjct: 149 NNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTT 208

Query: 509 PDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVGMDLS 568
              + N                        +              +    L         
Sbjct: 209 IYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYY 268

Query: 569 DNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNIS 628
            N     I         LE LN+S N L  ++P L     L  L  S N L  ++P    
Sbjct: 269 LNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPAL--PPRLERLIASFNHLA-EVPELPQ 324

Query: 629 SLQELTLLNLSYNSFSGF 646
           +L++   L++ YN    F
Sbjct: 325 NLKQ---LHVEYNPLREF 339

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 47.1 bits (110), Expect = 4e-06
 Identities = 56/336 (16%), Positives = 103/336 (30%), Gaps = 25/336 (7%)

Query: 302 LDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLI 361
           L+L+   LS  LP              L  S N  + E+P     LKSL     +   L 
Sbjct: 43  LELNNLGLSS-LPELPPHLES------LVASCNSLT-ELPELPQSLKSLLVDNNNLKALS 94

Query: 362 GEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDS 421
              P        L+ + +S+N L     L      +++ +  N+     ++ P L+ + +
Sbjct: 95  DLPP-------LLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAA 147

Query: 422 LKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLS 481
                    ++     LT     +  +       LS     A                L+
Sbjct: 148 GNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLT 207

Query: 482 GNLPNWLFSFQAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVI 541
               +         +        +      +                      L      
Sbjct: 208 TIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFL--DVSENIFSGLSELPPN 265

Query: 542 RISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVP 601
              + A      S      S   +++S+N L   +P    +   LE L  SFN L  +VP
Sbjct: 266 LYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPR---LERLIASFNHL-AEVP 320

Query: 602 GLYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLN 637
            L   ++L+ L + +N L  + P    S+++L + +
Sbjct: 321 EL--PQNLKQLHVEYNPLR-EFPDIPESVEDLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 45.6 bits (106), Expect = 1e-05
 Identities = 23/100 (23%), Positives = 38/100 (38%), Gaps = 12/100 (12%)

Query: 277 HLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRF 336
                 N  + EI         L  L++S N L   LP+   +      L  L  S N  
Sbjct: 264 PNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPALPPR------LERLIASFNHL 316

Query: 337 SGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQV 376
           + E+P      ++L+ L +  N L  E P    ++  L++
Sbjct: 317 A-EVP---ELPQNLKQLHVEYNPLR-EFPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 40.6 bits (93), Expect = 4e-04
 Identities = 18/89 (20%), Positives = 32/89 (35%), Gaps = 6/89 (6%)

Query: 187 FSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAA 246
           +  N+   EI        SL+ L++  N L   +      L  L    N  +  +P    
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLERLIASFNHLA-EVP---E 321

Query: 247 SAMSLTVLKLDNNSVVGGIPTCIASLQAL 275
              +L  L ++ N +    P    S++ L
Sbjct: 322 LPQNLKQLHVEYNPLR-EFPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 40.2 bits (92), Expect = 7e-04
 Identities = 17/103 (16%), Positives = 32/103 (31%), Gaps = 8/103 (7%)

Query: 63  SWVGSNCTNWTGVACNFQTGHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRI 122
               S                +        + S ++         LE L +S+N    ++
Sbjct: 241 ELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNN----KL 296

Query: 123 STCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNP 165
                    L+ L  S+N    V        +NL++L ++ NP
Sbjct: 297 IELPALPPRLERLIASFNHLAEVPEL----PQNLKQLHVEYNP 335

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 39.4 bits (90), Expect = 0.001
 Identities = 27/100 (27%), Positives = 39/100 (39%), Gaps = 15/100 (15%)

Query: 137 LSYNKFVGVVPDAIMKLRNLRELILKGNP--ELGGVFPGWVGNFSMNLEKLDFSFNSFCG 194
              N     +        +L EL +  N   EL  + P         LE+L  SFN    
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPALPP--------RLERLIASFNHL-A 317

Query: 195 EIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGS 234
           E+PE     ++LK L +E N L     D  +S+  L + S
Sbjct: 318 EVPEL---PQNLKQLHVEYNPLRE-FPDIPESVEDLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 37.9 bits (86), Expect = 0.003
 Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 4/65 (6%)

Query: 585 GLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFS 644
               L L+   L   +P L     L +L  S NSLT ++P    SL+ L + N +  + S
Sbjct: 39  QAHELELNNLGL-SSLPEL--PPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALS 94

Query: 645 GFVPW 649
              P 
Sbjct: 95  DLPPL 99

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 52.0 bits (123), Expect = 6e-08
 Identities = 30/220 (13%), Positives = 70/220 (31%), Gaps = 13/220 (5%)

Query: 397 QLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNL 456
             + +    +N++  +      LD +  L      ++  I   +  L +L  ++   N +
Sbjct: 20  NAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQI 75

Query: 457 SGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDGNFNFS 516
           +      +   T +    ++ N L                +  +    +  +   +    
Sbjct: 76  TD--LAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQV 133

Query: 517 LNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGTI 576
           L  + + I    P       + + I       D   L+   +L +   +   DN +    
Sbjct: 134 LYLDLNQITNISPLAGLTNLQYLSIGN-AQVSDLTPLANLSKLTT---LKADDNKISDIS 189

Query: 577 PKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSH 616
           P  L  L  L  ++L  N +   V  L    +L  + L++
Sbjct: 190 P--LASLPNLIEVHLKNNQISD-VSPLANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 51.6 bits (122), Expect = 7e-08
 Identities = 29/223 (13%), Positives = 72/223 (32%), Gaps = 13/223 (5%)

Query: 417 DALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIA 476
            AL +   +    + ++  +  T A L  +  +      ++    + +    NL    + 
Sbjct: 16  PALANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELK 71

Query: 477 RNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLP 536
            N+++   P    +      +  +  K +  I       +L+   + I    P       
Sbjct: 72  DNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNL 131

Query: 537 RSMVIRISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFL 596
           + + + ++     +                LS      +    L  L  L  L    N +
Sbjct: 132 QVLYLDLNQITNISPLAGLTNL------QYLSIGNAQVSDLTPLANLSKLTTLKADDNKI 185

Query: 597 DGQVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLS 639
              +  L  L +L  + L +N ++   P  +++   L ++ L+
Sbjct: 186 SD-ISPLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.2 bits (95), Expect = 2e-04
 Identities = 38/214 (17%), Positives = 69/214 (32%), Gaps = 19/214 (8%)

Query: 250 SLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDL 309
           +   +    ++V   +    A L  +T L+     +   I   + +   L+ L+L  N +
Sbjct: 20  NAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVT-TIEG-VQYLNNLIGLELKDNQI 75

Query: 310 SGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGE------ 363
           +   P K      +  L    L +      +    T   +   +     L          
Sbjct: 76  TDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLY 135

Query: 364 -----IPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDA 418
                I           +  LS      S    +    +L  L  ++N +S      L +
Sbjct: 136 LDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISD--ISPLAS 193

Query: 419 LDSLKILDISNNQISGEIPLTLAGLKSLEIVDFS 452
           L +L  + + NNQIS   P  LA   +L IV  +
Sbjct: 194 LPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.9 bits (89), Expect = 0.001
 Identities = 36/232 (15%), Positives = 60/232 (25%), Gaps = 24/232 (10%)

Query: 128 GLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNP--ELGGVFPGWVGNFSMNLEKL 185
            L+    +    +     V  A   L  +  L   G     + GV       +  NL  L
Sbjct: 17  ALANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVTTIEGV------QYLNNLIGL 68

Query: 186 DFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFA 245
           +   N      P       +   L          +        +    +     T     
Sbjct: 69  ELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGL 128

Query: 246 ASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLS 305
           ++   L          +  I              LS  +        L    KL  L   
Sbjct: 129 SNLQVL-------YLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKAD 181

Query: 306 FNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSN 357
            N +S   P  +A       L+ + L +N+ S   PL      +L  + L+N
Sbjct: 182 DNKISDISP--LASLPN---LIEVHLKNNQISDVSPLA--NTSNLFIVTLTN 226

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 47.0 bits (111), Expect = 5e-07
 Identities = 27/107 (25%), Positives = 44/107 (41%), Gaps = 4/107 (3%)

Query: 329 LDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSI 388
           L L+H   +  +   + +L  +  L LS+N L    PA +  L  L+V+  S N L    
Sbjct: 3   LHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNALENVD 59

Query: 389 PLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGE 435
            +  +   Q L L  NN          L +   L +L++  N +  E
Sbjct: 60  GVANLPRLQELLLC-NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 105

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 45.9 bits (108), Expect = 1e-06
 Identities = 22/109 (20%), Positives = 44/109 (40%), Gaps = 6/109 (5%)

Query: 351 QALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSG 410
           + L L++  L   +   +  L  +  +DLSHN L    P  +     L   ++  ++ + 
Sbjct: 1   RVLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLE--VLQASDNAL 55

Query: 411 EIQPELDALDSLKILDISNNQI-SGEIPLTLAGLKSLEIVDFSSNNLSG 458
           E    +  L  L+ L + NN++        L     L +++   N+L  
Sbjct: 56  ENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.9 bits (103), Expect = 5e-06
 Identities = 28/104 (26%), Positives = 37/104 (35%), Gaps = 25/104 (24%)

Query: 565 MDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSL--------------- 609
           + L+   L  T+   L QL  + +L+LS N L    P L  LR L               
Sbjct: 3   LHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG 60

Query: 610 -------RALDLSHNSLTG-QIPGNISSLQELTLLNLSYNSFSG 645
                  + L L +N L        + S   L LLNL  NS   
Sbjct: 61  VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.6 bits (97), Expect = 4e-05
 Identities = 26/116 (22%), Positives = 37/116 (31%), Gaps = 3/116 (2%)

Query: 185 LDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCF 244
           L  +       +   L  L  + HLDL  N L            +  L ++  +      
Sbjct: 3   LHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG 60

Query: 245 AASAMSLTVLKLDNNSVVGG-IPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKL 299
            A+   L  L L NN +        + S   L  LNL  N L  E   +    E L
Sbjct: 61  VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEML 116

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.3 bits (91), Expect = 2e-04
 Identities = 23/109 (21%), Positives = 37/109 (33%), Gaps = 8/109 (7%)

Query: 111 LVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGV 170
           L L+    T  +      L  +  LDLS+N+   + P A+  LR L             +
Sbjct: 3   LHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEV----LQASDNAL 55

Query: 171 FPGWVGNFSMNLEKLDFSFNSF-CGEIPESLYYLKSLKHLDLEKNNLTG 218
                      L++L    N        + L     L  L+L+ N+L  
Sbjct: 56  ENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.2 bits (83), Expect = 0.003
 Identities = 19/109 (17%), Positives = 37/109 (33%), Gaps = 7/109 (6%)

Query: 278 LNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFS 337
           L+L+H  L   +   L     +  LDLS N L    P+           + +  + +   
Sbjct: 3   LHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPPA-----LAALRCLEVLQASDNAL 55

Query: 338 GEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSG 386
             +       +  + L  +N L        + +   L +++L  N L  
Sbjct: 56  ENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.8 bits (82), Expect = 0.004
 Identities = 19/111 (17%), Positives = 33/111 (29%), Gaps = 11/111 (9%)

Query: 133 KTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSF 192
           + L L++      V   + +L  +  L L  N              +          +  
Sbjct: 1   RVLHLAHKDL--TVLCHLEQLLLVTHLDLSHNR-----LRALPPALAALRCLEVLQASDN 53

Query: 193 CGEIPESLYYLKSLKHLDLEKNNLTGNVH----DFYQSLLVLNLGSNRFSG 239
             E  + +  L  L+ L L  N L  +           L++LNL  N    
Sbjct: 54  ALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.9 bits (109), Expect = 6e-06
 Identities = 14/90 (15%), Positives = 31/90 (34%), Gaps = 5/90 (5%)

Query: 326 LVLLDLSHNRFSGEIPLKITE-LKSLQALFLSNNLL----IGEIPARIGNLTYLQVIDLS 380
           +  LD+     S     ++   L+  Q + L +  L      +I + +     L  ++L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 381 HNMLSGSIPLNIVGCFQLLALIVNNNNLSG 410
            N L       ++   Q  +  +   +L  
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (106), Expect = 2e-05
 Identities = 22/101 (21%), Positives = 36/101 (35%), Gaps = 12/101 (11%)

Query: 266 PTCIASLQALTHLNLSHNHLNYE----ISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTT 321
                    L  L L+   ++      ++  L+    L  LDLS N L      ++ ++ 
Sbjct: 362 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESV 421

Query: 322 EKAGLVL--LDLSHNRFSGEIPLKITELKSLQALFLSNNLL 360
            + G +L  L L    +S E+         LQAL      L
Sbjct: 422 RQPGCLLEQLVLYDIYWSEEME------DRLQALEKDKPSL 456

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.2 bits (102), Expect = 4e-05
 Identities = 21/91 (23%), Positives = 43/91 (47%), Gaps = 13/91 (14%)

Query: 348 KSLQALFLSNNLL----IGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQ-----L 398
             L+ L+L++  +       + A +     L+ +DLS+N L  +  L +V   +     L
Sbjct: 369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLL 428

Query: 399 LALIVNNNNLSGEIQPELDALD----SLKIL 425
             L++ +   S E++  L AL+    SL+++
Sbjct: 429 EQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 459

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (101), Expect = 6e-05
 Identities = 17/121 (14%), Positives = 27/121 (22%), Gaps = 6/121 (4%)

Query: 565 MDLSDNLLHGTIPKGLF-QLQGLEYLNLSFNFLDGQ-----VPGLYRLRSLRALDLSHNS 618
           +D+    L       L   LQ  + + L    L           L    +L  L+L  N 
Sbjct: 7   LDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE 66

Query: 619 LTGQIPGNISSLQELTLLNLSYNSFSGFVPWKQGYQKFPGAFAGNPNLCLESSHGECNRT 678
           L       +    +     +   S         G           P L            
Sbjct: 67  LGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGD 126

Query: 679 S 679
           +
Sbjct: 127 A 127

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (101), Expect = 7e-05
 Identities = 16/86 (18%), Positives = 28/86 (32%), Gaps = 8/86 (9%)

Query: 179 SMNLEKLDFSFNSFCGE-IPESLYYLKSLKHLDLEKNNLT-------GNVHDFYQSLLVL 230
           S++++ LD            E L  L+  + + L+   LT        +      +L  L
Sbjct: 1   SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60

Query: 231 NLGSNRFSGTLPCFAASAMSLTVLKL 256
           NL SN             +     K+
Sbjct: 61  NLRSNELGDVGVHCVLQGLQTPSCKI 86

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (100), Expect = 8e-05
 Identities = 19/93 (20%), Positives = 32/93 (34%), Gaps = 15/93 (16%)

Query: 326 LVLLDLSHNRFSGE----IPLKITELKSLQALFLSNNLLIGEIPARIG-----NLTYLQV 376
           L +L L+    S      +   +    SL+ L LSNN L      ++          L+ 
Sbjct: 371 LRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQ 430

Query: 377 IDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLS 409
           + L     S  +        +L AL  +  +L 
Sbjct: 431 LVLYDIYWSEEME------DRLQALEKDKPSLR 457

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (100), Expect = 8e-05
 Identities = 12/75 (16%), Positives = 28/75 (37%), Gaps = 5/75 (6%)

Query: 421 SLKILDISNNQISGE-IPLTLAGLKSLEIVDFSSNNLSG----SLNDAITKWTNLKYFSI 475
            ++ LDI   ++S       L  L+  ++V      L+      ++ A+     L   ++
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 476 ARNKLSGNLPNWLFS 490
             N+L     + +  
Sbjct: 63  RSNELGDVGVHCVLQ 77

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (99), Expect = 9e-05
 Identities = 14/105 (13%), Positives = 31/105 (29%), Gaps = 5/105 (4%)

Query: 398 LLALIVNNNNLSGEIQPEL-DALDSLKILDISNNQISGE----IPLTLAGLKSLEIVDFS 452
           + +L +    LS     EL   L   +++ + +  ++      I   L    +L  ++  
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 453 SNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMM 497
           SN L       + +        I +  L                +
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTL 108

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (98), Expect = 1e-04
 Identities = 15/137 (10%), Positives = 39/137 (28%), Gaps = 5/137 (3%)

Query: 374 LQVIDLSHNMLSGSIPLNIVGCFQLL-ALIVNNNNLSGE----IQPELDALDSLKILDIS 428
           +Q +D+    LS +    ++   Q    + +++  L+      I   L    +L  L++ 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 429 NNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWL 488
           +N++       +              +L                          +L + L
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL 123

Query: 489 FSFQAIQMMDFSTNKFM 505
                +Q++        
Sbjct: 124 LGDAGLQLLCEGLLDPQ 140

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (96), Expect = 2e-04
 Identities = 14/91 (15%), Positives = 27/91 (29%), Gaps = 5/91 (5%)

Query: 226 SLLVLNLGSNRFSGT-LPCFAASAMSLTVLKLDNNSV----VGGIPTCIASLQALTHLNL 280
            +  L++     S               V++LD+  +       I + +    AL  LNL
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 281 SHNHLNYEISPRLVFFEKLLLLDLSFNDLSG 311
             N L       ++   +     +    L  
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (92), Expect = 7e-04
 Identities = 16/89 (17%), Positives = 27/89 (30%), Gaps = 5/89 (5%)

Query: 249 MSLTVLKLDNNSVV-GGIPTCIASLQALTHLNLSHNHLNYE----ISPRLVFFEKLLLLD 303
           + +  L +    +        +  LQ    + L    L       IS  L     L  L+
Sbjct: 2   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61

Query: 304 LSFNDLSGPLPSKIAQTTEKAGLVLLDLS 332
           L  N+L       + Q  +     +  LS
Sbjct: 62  LRSNELGDVGVHCVLQGLQTPSCKIQKLS 90

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (92), Expect = 7e-04
 Identities = 20/94 (21%), Positives = 31/94 (32%), Gaps = 13/94 (13%)

Query: 394 GCFQLLALIVNNNNLSGE----IQPELDALDSLKILDISNNQISGEIPLTLAG-----LK 444
               L  L + + ++S      +   L A  SL+ LD+SNN +     L L         
Sbjct: 367 PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGC 426

Query: 445 SLEIVDFSSNNLSG----SLNDAITKWTNLKYFS 474
            LE +       S      L        +L+  S
Sbjct: 427 LLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVIS 460

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (91), Expect = 8e-04
 Identities = 17/91 (18%), Positives = 29/91 (31%), Gaps = 9/91 (9%)

Query: 242 PCFAASAMSLTVLKLDNNSV----VGGIPTCIASLQALTHLNLSHNHLNYEISPRLV--- 294
                    L VL L +  V       +   + +  +L  L+LS+N L      +LV   
Sbjct: 362 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESV 421

Query: 295 --FFEKLLLLDLSFNDLSGPLPSKIAQTTEK 323
                 L  L L     S  +  ++    + 
Sbjct: 422 RQPGCLLEQLVLYDIYWSEEMEDRLQALEKD 452

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (90), Expect = 0.001
 Identities = 20/95 (21%), Positives = 29/95 (30%), Gaps = 15/95 (15%)

Query: 586 LEYLNLSFNFLDGQVP-----GLYRLRSLRALDLSHNSLTGQIPGNISSLQE-----LTL 635
           L  L L+   +           L    SLR LDLS+N L       +          L  
Sbjct: 371 LRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQ 430

Query: 636 LNLSYNSFSGFVPWKQGYQKFPGAFAGNPNLCLES 670
           L L    +S      +   +        P+L + S
Sbjct: 431 LVLYDIYWSE-----EMEDRLQALEKDKPSLRVIS 460

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (89), Expect = 0.002
 Identities = 11/68 (16%), Positives = 23/68 (33%), Gaps = 5/68 (7%)

Query: 155 NLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSF----CGEIPESLYYLKSLKHLD 210
           +++ L ++   EL       +       + +           C +I  +L    +L  L+
Sbjct: 3   DIQSLDIQCE-ELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61

Query: 211 LEKNNLTG 218
           L  N L  
Sbjct: 62  LRSNELGD 69

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (86), Expect = 0.004
 Identities = 17/118 (14%), Positives = 34/118 (28%), Gaps = 10/118 (8%)

Query: 86  SINLTDTSLSGQVHPRLCK-LSFLEFLVLSSNAFTGR----ISTCFGGLSGLKTLDLSYN 140
           S+++    LS      L   L   + + L     T      IS+       L  L+L  N
Sbjct: 6   SLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSN 65

Query: 141 KFVGVVPDAIMKL-----RNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFC 193
           +   V    +++        +++L L+     G                 +   +   
Sbjct: 66  ELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL 123

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 46.0 bits (107), Expect = 9e-06
 Identities = 39/335 (11%), Positives = 82/335 (24%), Gaps = 37/335 (11%)

Query: 322 EKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGE----IPARIGNLTYLQVI 377
           E   L L  ++       +   + E  S++ + LS N +  E    +   I +   L++ 
Sbjct: 6   EGKSLKLDAITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 64

Query: 378 DLSHNMLSGSIPLNIVGCFQLLALIVNNNNLS---GEIQPELDALDSLKILDISNNQISG 434
           + S                 LL  ++    L                  I  +S +    
Sbjct: 65  EFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLE 124

Query: 435 EIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAI 494
            + L   GL        +      ++N        L+     RN+L              
Sbjct: 125 HLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS 184

Query: 495 QMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELS 554
             +  +                    +  +   +     +    +          +    
Sbjct: 185 HRLLHTVKMVQ-------NGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI 237

Query: 555 FNYQLFSAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDL 614
                 +   + L+D LL       +                            L+ L L
Sbjct: 238 ALKSWPNLRELGLNDCLLSARGAAAV-----------------VDAFSKLENIGLQTLRL 280

Query: 615 SHNSLTGQIPGNISS-----LQELTLLNLSYNSFS 644
            +N +       + +     + +L  L L+ N FS
Sbjct: 281 QYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 315

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 39.5 bits (90), Expect = 0.001
 Identities = 14/92 (15%), Positives = 32/92 (34%), Gaps = 5/92 (5%)

Query: 581 FQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQ----IPGNISSLQELTLL 636
            + + L+   ++          L    S++ + LS N++  +    +  NI+S ++L + 
Sbjct: 5   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 64

Query: 637 NLSYNSFSGFVP-WKQGYQKFPGAFAGNPNLC 667
             S            +  +    A    P L 
Sbjct: 65  EFSDIFTGRVKDEIPEALRLLLQALLKCPKLH 96

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 37.6 bits (85), Expect = 0.004
 Identities = 16/107 (14%), Positives = 32/107 (29%), Gaps = 7/107 (6%)

Query: 64  WVGSNCTNWTGVACNFQTGHVVSINLTDTSLSGQV-HPRLCKLSFLEFLVLSSNAFTGRI 122
              S          N +   +    L+    +  V      +   L+ L L  N      
Sbjct: 230 LGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDA 289

Query: 123 -----STCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGN 164
                +     +  L  L+L+ N+F     D + ++R +     +G 
Sbjct: 290 VRTLKTVIDEKMPDLLFLELNGNRF-SEEDDVVDEIREVFSTRGRGE 335

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.7 bits (101), Expect = 3e-05
 Identities = 27/228 (11%), Positives = 68/228 (29%), Gaps = 12/228 (5%)

Query: 421 SLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKL 480
           S ++     ++++ EIP  L   ++   + F    L      A + + +L+   I++N +
Sbjct: 9   SNRVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDV 65

Query: 481 SGNLPNWLFSFQAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMV 540
              +   +FS                   +     +L   +  +  +   K       + 
Sbjct: 66  LEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIH 125

Query: 541 IRISVTAIDTNELSFNYQLFSAVGM--------DLSDNLLHGTIPKGLFQLQGLEYLNLS 592
               V     + ++ +    ++            L+ N +           Q  E     
Sbjct: 126 SLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSD 185

Query: 593 FNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLS 639
            N L+       +       LD+S   +       + +L++L   +  
Sbjct: 186 NNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY 233

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (94), Expect = 2e-04
 Identities = 16/104 (15%), Positives = 30/104 (28%)

Query: 64  WVGSNCTNWTGVACNFQTGHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRIS 123
               N       +    +   V + L    +    +         E  +  +N      +
Sbjct: 135 QDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPN 194

Query: 124 TCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPEL 167
             F G SG   LD+S  +   +    +  L+ LR        +L
Sbjct: 195 DVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLKKL 238

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (97), Expect = 6e-05
 Identities = 29/148 (19%), Positives = 50/148 (33%), Gaps = 7/148 (4%)

Query: 309 LSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARI 368
           L+  L  + AQ T       LDL   +    I      L    A+  S+N +        
Sbjct: 3   LTAELIEQAAQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR--KLDGF 59

Query: 369 GNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSG----EIQPELDALDSLKI 424
             L  L+ + +++N +             L  LI+ NN+L      +    L +L  L I
Sbjct: 60  PLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCI 119

Query: 425 LDISNNQISGEIPLTLAGLKSLEIVDFS 452
           L              +  +  + ++DF 
Sbjct: 120 LRNPVTNKKHYRLYVIYKVPQVRVLDFQ 147

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (86), Expect = 0.002
 Identities = 10/59 (16%), Positives = 20/59 (33%), Gaps = 2/59 (3%)

Query: 591 LSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVPW 649
           L+   ++ Q          R LDL    +   I    ++L +   ++ S N       +
Sbjct: 3   LTAELIE-QAAQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKLDGF 59

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 42.0 bits (97), Expect = 1e-04
 Identities = 27/210 (12%), Positives = 65/210 (30%), Gaps = 12/210 (5%)

Query: 403 VNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLND 462
           +  +    +I  +  AL       +    ++  +  +   L  +  +      +  S+ D
Sbjct: 2   ITQDTPINQIFTD-TALAEKMKTVLGKTNVTDTV--SQTDLDQVTTLQADRLGIK-SI-D 56

Query: 463 AITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDGNFNFSLNFNKS 522
            +    NL   + + N+L+              +     N  +  I       +L     
Sbjct: 57  GVEYLNNLTQINFSNNQLTDI---TPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTL 113

Query: 523 DIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGTIPKGLFQ 582
              +           ++      +   ++  + +           S+ +   T  K L  
Sbjct: 114 FNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQV---TDLKPLAN 170

Query: 583 LQGLEYLNLSFNFLDGQVPGLYRLRSLRAL 612
           L  LE L++S N +   +  L +L +L +L
Sbjct: 171 LTTLERLDISSNKVSD-ISVLAKLTNLESL 199

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.8 bits (94), Expect = 2e-04
 Identities = 32/223 (14%), Positives = 66/223 (29%), Gaps = 35/223 (15%)

Query: 417 DALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIA 476
           DA       ++    ++  +  T   L S++ +  +++++       I    N+    + 
Sbjct: 21  DAFAETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKS--VQGIQYLPNVTKLFLN 76

Query: 477 RNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLP 536
            NKL+   P           +D +  K +  + D     SL+   + I            
Sbjct: 77  GNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQL 136

Query: 537 RSMVIRISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFL 596
            S+ +              N      V   L+           +  +             
Sbjct: 137 ESLYLG------------NNKITDITVLSRLTKLDTLSLEDNQISDI------------- 171

Query: 597 DGQVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLS 639
                 L  L  L+ L LS N ++      ++ L+ L +L L 
Sbjct: 172 ----VPLAGLTKLQNLYLSKNHISD--LRALAGLKNLDVLELF 208

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.1 bits (87), Expect = 0.002
 Identities = 15/82 (18%), Positives = 30/82 (36%), Gaps = 7/82 (8%)

Query: 312 PLPSKIAQTTEKAGL---VLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARI 368
            +P+ I Q          +  +L     +  +     EL S+  +  +N+ +       I
Sbjct: 9   TVPTPIKQIFSDDAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQG--I 64

Query: 369 GNLTYLQVIDLSHNMLSGSIPL 390
             L  +  + L+ N L+   PL
Sbjct: 65  QYLPNVTKLFLNGNKLTDIKPL 86

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.3 bits (85), Expect = 0.003
 Identities = 36/201 (17%), Positives = 70/201 (34%), Gaps = 15/201 (7%)

Query: 105 LSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGN 164
            +      L   + T  ++     L+ +  +  + +    V    I  L N+ +L L GN
Sbjct: 23  FAETIKDNLKKKSVTDAVTQ--NELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGN 78

Query: 165 PELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFY 224
                           NL+ L + F         S             ++N   +++   
Sbjct: 79  KLTDIKPLA-------NLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLV 131

Query: 225 QSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNH 284
               + +L       T     +    L  L L++N +   +P  +A L  L +L LS NH
Sbjct: 132 HLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH 189

Query: 285 LNYEISPRLVFFEKLLLLDLS 305
           ++ ++   L   + L +L+L 
Sbjct: 190 IS-DLRA-LAGLKNLDVLELF 208

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 37.9 bits (86), Expect = 0.002
 Identities = 24/96 (25%), Positives = 38/96 (39%), Gaps = 6/96 (6%)

Query: 122 ISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMN 181
            +  F GL  LKTL+L  N+   V+P +   L +L  L L  NP        W   F+  
Sbjct: 94  SNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAW---FAEW 150

Query: 182 LEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLT 217
           L K   +  +     P     ++ ++  DL  +   
Sbjct: 151 LRKKSLNGGAARCGAPSK---VRDVQIKDLPHSEFK 183

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	732
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	100.0
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	100.0
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.96
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.95
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.92
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.92
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.91
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.9
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.86
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.83
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.81
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.79
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.78
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.76
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.75
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.72
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.69
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.69
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.67
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.67
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.67
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.66
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.64
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.62
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.54
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.53
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.47
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.45
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.43
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.39
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.37
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.35
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.13
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.11
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.09
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.08
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.07
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.01
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.51
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.4
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.7
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.55

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=100.00  E-value=7.7e-40  Score=339.42  Aligned_cols=293  Identities=30%  Similarity=0.489  Sum_probs=229.0

Q ss_pred             CHHhHHHHHHHHhcCCCCCCCCCCC-CCCCCCC--ccceeecCC--CCcEEEEEcCCCCCcc--cccccccCCCCCCEEE
Q 004747           40 NLEDKASLLLFKSLVQDPTQKLSSW-VGSNCTN--WTGVACNFQ--TGHVVSINLTDTSLSG--QVHPRLCKLSFLEFLV  112 (732)
Q Consensus        40 ~~~~~~~l~~~k~~~~~~~~~l~~w-~~~~~c~--w~gv~c~~~--~~~v~~L~L~~~~l~~--~~~~~l~~l~~L~~L~  112 (732)
                      .++|++||++||+++.+|. .+++| .++|||.  |.||+|+..  .+||++|+|+++++.|  .+|++++++++|++|+
T Consensus         4 ~~~e~~aLl~~k~~~~~~~-~l~sW~~~~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~   82 (313)
T d1ogqa_           4 NPQDKQALLQIKKDLGNPT-TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLY   82 (313)
T ss_dssp             CHHHHHHHHHHHHHTTCCG-GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEE
T ss_pred             CHHHHHHHHHHHHHCCCCC-cCCCCCCCCCCCCCcCCCeEEeCCCCcEEEEEEECCCCCCCCCCCCChHHhcCccccccc
Confidence            3577889999999999874 68999 6889994  999999864  3489999999999987  5789999999999999


Q ss_pred             CCC-CCCCCcccccccCCCCCCEEECCCCCCCCCCCccccCCCCCCEEeCCCCCCCCCcCCchhhhcccCCcEEEeeCcc
Q 004747          113 LSS-NAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNS  191 (732)
Q Consensus       113 Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~~L~~L~Ls~n~  191 (732)
                      |++ |+++|.+|..|+++++|++|+|++|++.+..+..+..+.+|+++++++| ...+.+|..+.++ +.|+++++++|.
T Consensus        83 Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N-~~~~~~p~~l~~l-~~L~~l~l~~n~  160 (313)
T d1ogqa_          83 IGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYN-ALSGTLPPSISSL-PNLVGITFDGNR  160 (313)
T ss_dssp             EEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSS-EEESCCCGGGGGC-TTCCEEECCSSC
T ss_pred             cccccccccccccccccccccchhhhccccccccccccccchhhhcccccccc-cccccCchhhccC-cccceeeccccc
Confidence            986 8899999999999999999999999999988888989999999999988 5567778888888 788888888888


Q ss_pred             cccccCcccCCCCCC-CEEEeecccCCCccccccccccEEECCCCcCccccCchhhcccccCeeeCCCCccccccchhhh
Q 004747          192 FCGEIPESLYYLKSL-KHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIA  270 (732)
Q Consensus       192 l~~~~p~~l~~l~~L-~~L~Ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~  270 (732)
                      +.+.+|..+..+.++ +.+++++|++++                     ..|..+..+. ...++++.+...+.+|..+.
T Consensus       161 l~~~ip~~~~~l~~l~~~l~~~~n~l~~---------------------~~~~~~~~l~-~~~l~l~~~~~~~~~~~~~~  218 (313)
T d1ogqa_         161 ISGAIPDSYGSFSKLFTSMTISRNRLTG---------------------KIPPTFANLN-LAFVDLSRNMLEGDASVLFG  218 (313)
T ss_dssp             CEEECCGGGGCCCTTCCEEECCSSEEEE---------------------ECCGGGGGCC-CSEEECCSSEEEECCGGGCC
T ss_pred             cccccccccccccccccccccccccccc---------------------cccccccccc-cccccccccccccccccccc
Confidence            888888877777665 666666665554                     4444444443 33566677777666777667


Q ss_pred             ccCCCCEEEeccCCCCCcCccccccCcCCcEEEccCCCCCCCCchhhhhcCCCCCccEEeCCCCcccCCCcccccCCCCC
Q 004747          271 SLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSL  350 (732)
Q Consensus       271 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L  350 (732)
                      .+++++.+++++|.+.+.++ .+..+++|++|++++|+++|.+|+.+..++   +|++|+|++|+++|.+|. ++++++|
T Consensus       219 ~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~---~L~~L~Ls~N~l~g~iP~-~~~L~~L  293 (313)
T d1ogqa_         219 SDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLK---FLHSLNVSFNNLCGEIPQ-GGNLQRF  293 (313)
T ss_dssp             TTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCT---TCCEEECCSSEEEEECCC-STTGGGS
T ss_pred             cccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCC---CCCEEECcCCcccccCCC-cccCCCC
Confidence            77777777777777765543 466677777777777777777777777666   777777777777777774 4667777


Q ss_pred             CEEeccCcc-CCC
Q 004747          351 QALFLSNNL-LIG  362 (732)
Q Consensus       351 ~~L~Ls~n~-l~~  362 (732)
                      +.+++++|+ +.|
T Consensus       294 ~~l~l~~N~~l~g  306 (313)
T d1ogqa_         294 DVSAYANNKCLCG  306 (313)
T ss_dssp             CGGGTCSSSEEES
T ss_pred             CHHHhCCCccccC
Confidence            788887776 444

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=100.00  E-value=1.3e-32  Score=284.73  Aligned_cols=257  Identities=31%  Similarity=0.431  Sum_probs=221.4

Q ss_pred             CCCEEEccCCcCcc--ccCccccCCcCcceeeccc-ccccccCcccccCCCCCcEEEcccCceeeeccccCCCCCCCCEE
Q 004747          373 YLQVIDLSHNMLSG--SIPLNIVGCFQLLALIVNN-NNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIV  449 (732)
Q Consensus       373 ~L~~L~Ls~n~l~~--~~p~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L  449 (732)
                      +++.|+|++|.++|  .+|..+..+++|++|++++ |+++|.+|..++++++|++|+|++|++.+..+..+..+.+|+.+
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l  130 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL  130 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhccc
Confidence            46666666666665  4566777777777777765 66777777788888999999999999998888888889999999


Q ss_pred             EccCCcccccchhhhhcCCCCCEEEcccCCCccccchhhhcCCCC-CEEEccCCcCcccCCcccccCccccCcCCCCCCC
Q 004747          450 DFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAI-QMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSM  528 (732)
Q Consensus       450 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L-~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~  528 (732)
                      +++.|.+.+.+|..+..++.|+++++++|.+.+.+|..+..+..+ +.+++++|++++..|..+.               
T Consensus       131 ~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~---------------  195 (313)
T d1ogqa_         131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFA---------------  195 (313)
T ss_dssp             ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGG---------------
T ss_pred             ccccccccccCchhhccCcccceeecccccccccccccccccccccccccccccccccccccccc---------------
Confidence            999999998899999999999999999999999999988888776 8899999999887776531               


Q ss_pred             CCCcccCCCceeEEeEEEeecCCchhhhhhcccceEEEccCCcccccCCcccccccCCceeecccccceecCCcccCccC
Q 004747          529 PAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRS  608 (732)
Q Consensus       529 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~l~~l~~  608 (732)
                                                    ......++++++...|.+|..++.+++++.+++++|.+++.+|.++.+++
T Consensus       196 ------------------------------~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~  245 (313)
T d1ogqa_         196 ------------------------------NLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKN  245 (313)
T ss_dssp             ------------------------------GCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTT
T ss_pred             ------------------------------cccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence                                          11234689999999999999999999999999999999999888999999


Q ss_pred             CcEEeCCCCcCcccCCcCCCCCCCCCEEEcccCcceeeCCCCCCCCCcCc-cccCCCCCCCCCCCCCC
Q 004747          609 LRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVPWKQGYQKFPG-AFAGNPNLCLESSHGEC  675 (732)
Q Consensus       609 L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~-~~~gn~~lcg~~~~~~c  675 (732)
                      |+.|||++|+++|.+|+.|+++++|++|||++|+|+|.||....+..+.. .+.||+.+||.|++ .|
T Consensus       246 L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~~~L~~L~~l~l~~N~~l~g~plp-~c  312 (313)
T d1ogqa_         246 LNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP-AC  312 (313)
T ss_dssp             CCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred             cccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCcccCCCCCHHHhCCCccccCCCCC-CC
Confidence            99999999999999999999999999999999999999998877778877 89999999998875 56

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.96  E-value=1e-27  Score=255.20  Aligned_cols=323  Identities=24%  Similarity=0.239  Sum_probs=206.5

Q ss_pred             hhhcccccCeeeCCCCccccccchhhhccCCCCEEEeccCCCCCcCccccccCcCCcEEEccCCCCCCCCchhhhhcCCC
Q 004747          244 FAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEK  323 (732)
Q Consensus       244 ~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~  323 (732)
                      .+..+++|++|++++|++++..  .++++++|++|++++|.+.+..  .++.+++|+.|+++++.+++..+..  ...  
T Consensus        61 gl~~L~nL~~L~Ls~N~l~~l~--~l~~L~~L~~L~L~~n~i~~i~--~l~~l~~L~~L~~~~~~~~~~~~~~--~~~--  132 (384)
T d2omza2          61 GVEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIADIT--PLANLTNLTGLTLFNNQITDIDPLK--NLT--  132 (384)
T ss_dssp             TGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCCGGGT--TCT--
T ss_pred             ccccCCCCCEEeCcCCcCCCCc--cccCCccccccccccccccccc--ccccccccccccccccccccccccc--ccc--
Confidence            3555666666666666666432  2666667777777777665432  2566666777777666665432211  111  


Q ss_pred             CCccEEeCCCCcccCCCcccccCCCCCCEEeccCccCCCccccccCCCCCCCEEEccCCcCccccCccccCCcCcceeec
Q 004747          324 AGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIV  403 (732)
Q Consensus       324 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l  403 (732)
                       .+.......|.+....+................     .....+...+.........|...  ....+..++++..+.+
T Consensus       133 -~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~l~l  204 (384)
T d2omza2         133 -NLNRLELSSNTISDISALSGLTSLQQLSFGNQV-----TDLKPLANLTTLERLDISSNKVS--DISVLAKLTNLESLIA  204 (384)
T ss_dssp             -TCSEEEEEEEEECCCGGGTTCTTCSEEEEEESC-----CCCGGGTTCTTCCEEECCSSCCC--CCGGGGGCTTCSEEEC
T ss_pred             -ccccccccccccccccccccccccccccccccc-----chhhhhccccccccccccccccc--cccccccccccceeec
Confidence             344555555544422221111111111111111     11122344444455555555433  2344556667777777


Q ss_pred             ccccccccCcccccCCCCCcEEEcccCceeeeccccCCCCCCCCEEEccCCcccccchhhhhcCCCCCEEEcccCCCccc
Q 004747          404 NNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGN  483 (732)
Q Consensus       404 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  483 (732)
                      ++|.+++..+  +..+++|+.|++++|.+++ + ..+..+++|+.+++++|.+++..+  +..+++|++|++++|++.+.
T Consensus       205 ~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~~~l~~~  278 (384)
T d2omza2         205 TNNQISDITP--LGILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNI  278 (384)
T ss_dssp             CSSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCC
T ss_pred             cCCccCCCCc--ccccCCCCEEECCCCCCCC-c-chhhcccccchhccccCccCCCCc--ccccccCCEeeccCcccCCC
Confidence            7777766544  3456778888888888774 3 356677888888888888876543  66778888888888888744


Q ss_pred             cchhhhcCCCCCEEEccCCcCcccCCcccccCccccCcCCCCCCCCCCcccCCCceeEEeEEEeecCCchhhhhhcccce
Q 004747          484 LPNWLFSFQAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAV  563 (732)
Q Consensus       484 ~p~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~  563 (732)
                      .  .+..++.++.+++++|.+.+...                                              ...++.++
T Consensus       279 ~--~~~~~~~l~~l~~~~n~l~~~~~----------------------------------------------~~~~~~l~  310 (384)
T d2omza2         279 S--PLAGLTALTNLELNENQLEDISP----------------------------------------------ISNLKNLT  310 (384)
T ss_dssp             G--GGTTCTTCSEEECCSSCCSCCGG----------------------------------------------GGGCTTCS
T ss_pred             C--ccccccccccccccccccccccc----------------------------------------------cchhcccC
Confidence            3  26677788888888887754211                                              11267788


Q ss_pred             EEEccCCcccccCCcccccccCCceeecccccceecCCcccCccCCcEEeCCCCcCcccCCcCCCCCCCCCEEEcccC
Q 004747          564 GMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYN  641 (732)
Q Consensus       564 ~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N  641 (732)
                      .|++++|++++. + .+..+++|++|++++|+++ .++.+.++++|++||+++|++++.+|  +.++++|++|++++|
T Consensus       311 ~L~ls~n~l~~l-~-~l~~l~~L~~L~L~~n~l~-~l~~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         311 YLTLYFNNISDI-S-PVSSLTKLQRLFFANNKVS-DVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             EEECCSSCCSCC-G-GGGGCTTCCEEECCSSCCC-CCGGGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             eEECCCCCCCCC-c-ccccCCCCCEEECCCCCCC-CChhHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence            899999999854 3 3788999999999999998 46678889999999999999997765  788999999999988

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.95  E-value=2.5e-26  Score=244.31  Aligned_cols=146  Identities=26%  Similarity=0.382  Sum_probs=75.6

Q ss_pred             cCCCCCCEEeccCccCCCccccccCCCCCCCEEEccCCcCccccCccccCCcCcceeecccccccccCcccccCCCCCcE
Q 004747          345 TELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKI  424 (732)
Q Consensus       345 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  424 (732)
                      ..+++|+.|++++|.+++..+  +..+++|+.+++++|.+++..  .+..+..++.+.+..|.+.+.  ..+..+++++.
T Consensus       238 ~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~~~l~~~~--~~~~~~~l~~l~~~~n~l~~~--~~~~~~~~l~~  311 (384)
T d2omza2         238 ASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNIS--PLAGLTALTNLELNENQLEDI--SPISNLKNLTY  311 (384)
T ss_dssp             GGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCSCC--GGGGGCTTCSE
T ss_pred             hcccccchhccccCccCCCCc--ccccccCCEeeccCcccCCCC--ccccccccccccccccccccc--cccchhcccCe
Confidence            333444444444444432221  333444444444444443221  133344444444444444432  12455566666


Q ss_pred             EEcccCceeeeccccCCCCCCCCEEEccCCcccccchhhhhcCCCCCEEEcccCCCccccchhhhcCCCCCEEEccCC
Q 004747          425 LDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTN  502 (732)
Q Consensus       425 L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~ls~N  502 (732)
                      |++++|++++..  .+..+++|++|++++|++++ ++ .+..+++|++|++++|++++..|  +..+++|+.|++++|
T Consensus       312 L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         312 LTLYFNNISDIS--PVSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             EECCSSCCSCCG--GGGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             EECCCCCCCCCc--ccccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence            666666666432  25566666666666666664 22 46666677777777776664433  566667777777665

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.92  E-value=1.8e-23  Score=214.49  Aligned_cols=243  Identities=22%  Similarity=0.283  Sum_probs=132.5

Q ss_pred             CCCEEECCCCCCCCcccccccCCCCCCEEECCCCCCCCCCCccccCCCCCCEEeCCCCCCCCCcCCchhhhcccCCcEEE
Q 004747          107 FLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLD  186 (732)
Q Consensus       107 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~~L~~L~  186 (732)
                      ..+.+|-++++++ .+|..+.  +++++|+|++|+|+...+.+|.++++|++|++++|                      
T Consensus        11 ~~~~~~C~~~~L~-~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n----------------------   65 (305)
T d1xkua_          11 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINN----------------------   65 (305)
T ss_dssp             ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS----------------------
T ss_pred             cCCEEEecCCCCC-ccCCCCC--CCCCEEECcCCcCCCcChhHhhccccccccccccc----------------------
Confidence            4566777777776 4565553  56778888888777655556777666666666666                      


Q ss_pred             eeCcccccccCcccCCCCCCCEEEeecccCCCccccccccccEEECCCCcCccccCchhhcccccCeeeCCCCccc--cc
Q 004747          187 FSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVV--GG  264 (732)
Q Consensus       187 Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~--~~  264 (732)
                          .+....|..|.++++|++|++++|+++......+..++.|++..|.+.+..+..+.....+..++...|...  ..
T Consensus        66 ----~~~~i~~~~f~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~  141 (305)
T d1xkua_          66 ----KISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGI  141 (305)
T ss_dssp             ----CCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGB
T ss_pred             ----cccccchhhhhCCCccCEecccCCccCcCccchhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCC
Confidence                333333444555555555555555555444334444555555555555444444445555556666555322  22


Q ss_pred             cchhhhccCCCCEEEeccCCCCCcCccccccCcCCcEEEccCCCCCCCCchhhhhcCCCCCccEEeCCCCcccCCCcccc
Q 004747          265 IPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKI  344 (732)
Q Consensus       265 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l  344 (732)
                      .+..+..+++|+++++++|.++. +|..  .+++|+.|++++|..++..+..+..+.   .++.|++++|.+++..+.++
T Consensus       142 ~~~~~~~l~~L~~l~l~~n~l~~-l~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~---~l~~L~~s~n~l~~~~~~~~  215 (305)
T d1xkua_         142 ENGAFQGMKKLSYIRIADTNITT-IPQG--LPPSLTELHLDGNKITKVDAASLKGLN---NLAKLGLSFNSISAVDNGSL  215 (305)
T ss_dssp             CTTGGGGCTTCCEEECCSSCCCS-CCSS--CCTTCSEEECTTSCCCEECTGGGTTCT---TCCEEECCSSCCCEECTTTG
T ss_pred             CccccccccccCccccccCCccc-cCcc--cCCccCEEECCCCcCCCCChhHhhccc---cccccccccccccccccccc
Confidence            33445556666666666665542 2222  134555555555555544444444333   45555555555554444455


Q ss_pred             cCCCCCCEEeccCccCCCccccccCCCCCCCEEEccCCcCc
Q 004747          345 TELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLS  385 (732)
Q Consensus       345 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~  385 (732)
                      ..+++|++|+|++|+++ .+|..+.++++|++|++++|+++
T Consensus       216 ~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~  255 (305)
T d1xkua_         216 ANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS  255 (305)
T ss_dssp             GGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCC
T ss_pred             cccccceeeeccccccc-ccccccccccCCCEEECCCCccC
Confidence            55555555555555554 33445555555555555555554

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.92  E-value=2.3e-23  Score=213.68  Aligned_cols=253  Identities=19%  Similarity=0.196  Sum_probs=127.4

Q ss_pred             ccEEECCCCcCccccCchhhcccccCeeeCCCCccccccchhhhccCCCCEEEeccCCCCCcCccccccCcCCcEEEccC
Q 004747          227 LLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSF  306 (732)
Q Consensus       227 L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~  306 (732)
                      +++|+|++|+++...+..|.++++|++|++++|.+....|..|.++++|++|++++|+++. +|..  ....++.|++.+
T Consensus        33 l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~-l~~~--~~~~l~~L~~~~  109 (305)
T d1xkua_          33 TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE-LPEK--MPKTLQELRVHE  109 (305)
T ss_dssp             CCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSB-CCSS--CCTTCCEEECCS
T ss_pred             CCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccCc-Cccc--hhhhhhhhhccc
Confidence            4444444444443333456666667777777776666556666666777777777766653 3322  234566666666


Q ss_pred             CCCCCCCchhhhhcCCCCCccEEeCCCCccc--CCCcccccCCCCCCEEeccCccCCCccccccCCCCCCCEEEccCCcC
Q 004747          307 NDLSGPLPSKIAQTTEKAGLVLLDLSHNRFS--GEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNML  384 (732)
Q Consensus       307 n~l~~~~p~~~~~l~~~~~L~~L~Ls~n~l~--~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l  384 (732)
                      |.+.+..+..+....   .+..++...|...  ...+..+..+++|+.+++++|.+. .+|..  .+++|+.|++++|..
T Consensus       110 n~l~~l~~~~~~~~~---~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~-~l~~~--~~~~L~~L~l~~n~~  183 (305)
T d1xkua_         110 NEITKVRKSVFNGLN---QMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQG--LPPSLTELHLDGNKI  183 (305)
T ss_dssp             SCCCBBCHHHHTTCT---TCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSS--CCTTCSEEECTTSCC
T ss_pred             cchhhhhhhhhhccc---cccccccccccccccCCCccccccccccCccccccCCcc-ccCcc--cCCccCEEECCCCcC
Confidence            666543333333222   4455555555332  122334455555666666665554 23322  234555555555555


Q ss_pred             ccccCccccCCcCcceeecccccccccCcccccCCCCCcEEEcccCceeeeccccCCCCCCCCEEEccCCcccccchhhh
Q 004747          385 SGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAI  464 (732)
Q Consensus       385 ~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~  464 (732)
                      ++..+..+.                        .++.++.|++++|.+++..+..+.++++|++|+|++|+++ .+|.++
T Consensus       184 ~~~~~~~~~------------------------~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l  238 (305)
T d1xkua_         184 TKVDAASLK------------------------GLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGL  238 (305)
T ss_dssp             CEECTGGGT------------------------TCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTT
T ss_pred             CCCChhHhh------------------------ccccccccccccccccccccccccccccceeeeccccccc-cccccc
Confidence            544444444                        4444455555555554444444444555555555555544 234444


Q ss_pred             hcCCCCCEEEcccCCCccccc------hhhhcCCCCCEEEccCCcCc-ccCCcccc
Q 004747          465 TKWTNLKYFSIARNKLSGNLP------NWLFSFQAIQMMDFSTNKFM-GFIPDGNF  513 (732)
Q Consensus       465 ~~l~~L~~L~L~~N~l~~~~p------~~~~~~~~L~~L~ls~N~l~-~~~p~~~~  513 (732)
                      ..+++|++|++++|+++..-.      .......+|+.|++++|++. ..+++..|
T Consensus       239 ~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~~~~~~~~f  294 (305)
T d1xkua_         239 ADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTF  294 (305)
T ss_dssp             TTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGG
T ss_pred             ccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCccCcCCHhHh
Confidence            445555555555555442211      11223455666666666653 34444443

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=2.7e-24  Score=218.15  Aligned_cols=267  Identities=19%  Similarity=0.195  Sum_probs=155.2

Q ss_pred             EeCCCCcccCCCcccccCCCCCCEEeccCccCCCccccccCCCCCCCEEEccCCcCccccCccccCCcCcceeecc-ccc
Q 004747          329 LDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVN-NNN  407 (732)
Q Consensus       329 L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~-~n~  407 (732)
                      ++.++++++ .+|..+.  +.+++|+|++|++++..+..|.++++|++|++++|.+.+..+..+..+..++.+... .+.
T Consensus        16 v~c~~~~L~-~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~   92 (284)
T d1ozna_          16 TSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ   92 (284)
T ss_dssp             EECCSSCCS-SCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred             EEcCCCCCC-ccCCCCC--CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccc
Confidence            344555554 4444332  345566666666654444455666666666666666655555555555555555433 334


Q ss_pred             ccccCcccccCCCCCcEEEcccCceeeeccccCCCCCCCCEEEccCCcccccchhhhhcCCCCCEEEcccCCCccccchh
Q 004747          408 LSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNW  487 (732)
Q Consensus       408 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~  487 (732)
                      +....+..+.++++|++|++++|.+....+..+..+++|+.+++++|.+++..+..|..+++|+.|++++|++.+..+..
T Consensus        93 ~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~  172 (284)
T d1ozna_          93 LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERA  172 (284)
T ss_dssp             CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTT
T ss_pred             cccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhh
Confidence            44444555666667777777777666555555666666777777777776655566666666777777777766655666


Q ss_pred             hhcCCCCCEEEccCCcCcccCCcccccCccccCcCCCCCCCCCCcccCCCceeEEeEEEeecCCchhhhhhcccceEEEc
Q 004747          488 LFSFQAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVGMDL  567 (732)
Q Consensus       488 ~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdL  567 (732)
                      +..+++|+.+++++|++++..|..+ ..                                           ++++++||+
T Consensus       173 f~~l~~L~~l~l~~N~l~~i~~~~f-~~-------------------------------------------l~~L~~L~l  208 (284)
T d1ozna_         173 FRGLHSLDRLLLHQNRVAHVHPHAF-RD-------------------------------------------LGRLMTLYL  208 (284)
T ss_dssp             TTTCTTCCEEECCSSCCCEECTTTT-TT-------------------------------------------CTTCCEEEC
T ss_pred             hccccccchhhhhhccccccChhHh-hh-------------------------------------------hhhcccccc
Confidence            6666666666666666665444332 11                                           455666667


Q ss_pred             cCCcccccCCcccccccCCceeecccccceecCCcccCccCCcEEeCCCCcCcccCCcCCCCCCCCCEEEcccCccee
Q 004747          568 SDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSG  645 (732)
Q Consensus       568 s~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g  645 (732)
                      ++|++++..|..++.+++|++|++++|.+...-+...-...++.+....+++....|..+++   ....+++.+.|+|
T Consensus       209 ~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~~~l~~~l~~~~~~~~~~~C~~p~~l~g---~~l~~l~~~~l~g  283 (284)
T d1ozna_         209 FANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQRLAG---RDLKRLAANDLQG  283 (284)
T ss_dssp             CSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHHHHHCCSEECCCBEEESGGGTT---CBGGGSCGGGSCC
T ss_pred             cccccccccccccccccccCEEEecCCCCCCCccchHHHHHHHhCcCCCCceEeCCchHHcC---CccccCCHHHCCC
Confidence            77766655556666677777777777776643332112234555566666666666665543   3334455555544

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=2.1e-23  Score=211.51  Aligned_cols=224  Identities=22%  Similarity=0.187  Sum_probs=125.1

Q ss_pred             eeCCCCccccccchhhhccCCCCEEEeccCCCCCcCccccccCcCCcEEEccCCCCCCCCchhhhhcCCCCCccEEeCCC
Q 004747          254 LKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSH  333 (732)
Q Consensus       254 L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~L~~L~Ls~  333 (732)
                      ++.++++++ .+|..+.  +.+++|+|++|+++...+..+.++++|++|++++|.+.+..                    
T Consensus        16 v~c~~~~L~-~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~--------------------   72 (284)
T d1ozna_          16 TSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARID--------------------   72 (284)
T ss_dssp             EECCSSCCS-SCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEEC--------------------
T ss_pred             EEcCCCCCC-ccCCCCC--CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccc--------------------
Confidence            344444444 3343321  34556666666655444444555555555555555554333                    


Q ss_pred             CcccCCCcccccCCCCCCEEecc-CccCCCccccccCCCCCCCEEEccCCcCccccCccccCCcCcceeecccccccccC
Q 004747          334 NRFSGEIPLKITELKSLQALFLS-NNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEI  412 (732)
Q Consensus       334 n~l~~~~p~~l~~l~~L~~L~Ls-~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~  412 (732)
                             +..+..++.++.+... .+.++...+..+.++++|++|++++|.+....+..+....+|+.+++++|.+++..
T Consensus        73 -------~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~  145 (284)
T d1ozna_          73 -------AAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALP  145 (284)
T ss_dssp             -------TTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred             -------cccccccccccccccccccccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccC
Confidence                   3333333444444332 22333333334444444444444444444333334444444555555555554444


Q ss_pred             cccccCCCCCcEEEcccCceeeeccccCCCCCCCCEEEccCCcccccchhhhhcCCCCCEEEcccCCCccccchhhhcCC
Q 004747          413 QPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQ  492 (732)
Q Consensus       413 ~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~  492 (732)
                      +..|..+++|+.|++++|++++..+..|.++++|+++++++|++++..|.+|..+++|++|++++|++.+..+..+..++
T Consensus       146 ~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~  225 (284)
T d1ozna_         146 DDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLR  225 (284)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCT
T ss_pred             hhHhccccchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhccccccccccccccccccccccc
Confidence            44556666677777777777666666667777777777777777766667777777777777777777766666677777


Q ss_pred             CCCEEEccCCcCccc
Q 004747          493 AIQMMDFSTNKFMGF  507 (732)
Q Consensus       493 ~L~~L~ls~N~l~~~  507 (732)
                      +|++|++++|++.+.
T Consensus       226 ~L~~L~l~~N~l~C~  240 (284)
T d1ozna_         226 ALQYLRLNDNPWVCD  240 (284)
T ss_dssp             TCCEEECCSSCEECS
T ss_pred             ccCEEEecCCCCCCC
Confidence            777777777776543

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=4.6e-21  Score=191.85  Aligned_cols=200  Identities=24%  Similarity=0.268  Sum_probs=139.9

Q ss_pred             cCCcEEEccCCCCCCCCchhhhhcCCCCCccEEeCCCCcccCCCcccccCCCCCCEEeccCccCCCccccccCCCCCCCE
Q 004747          297 EKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQV  376 (732)
Q Consensus       297 ~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~  376 (732)
                      ..+.+++.++++++ .+|..+..     ++++|+|++|++++..+..|..+++|++|+|++|+++ .+| .++.+++|++
T Consensus        10 ~~~~~v~C~~~~L~-~iP~~lp~-----~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~-~l~-~~~~l~~L~~   81 (266)
T d1p9ag_          10 ASHLEVNCDKRNLT-ALPPDLPK-----DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQ-VDGTLPVLGT   81 (266)
T ss_dssp             TTCCEEECTTSCCS-SCCSCCCT-----TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEE-CCSCCTTCCE
T ss_pred             CCCeEEEccCCCCC-eeCcCcCc-----CCCEEECcCCcCCCcCHHHhhcccccccccccccccc-ccc-cccccccccc
Confidence            34444555555555 34443321     5666666666666444455666666777777777665 333 2456667777


Q ss_pred             EEccCCcCccccCccccCCcCcceeecccccccccCcccccCCCCCcEEEcccCceeeeccccCCCCCCCCEEEccCCcc
Q 004747          377 IDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNL  456 (732)
Q Consensus       377 L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l  456 (732)
                      |++++|++++ .+..+..+++|+.|++++|.+.+..+..+..+.+++.|++++|.++...+..+..+++|+.+++++|++
T Consensus        82 L~Ls~N~l~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l  160 (266)
T d1p9ag_          82 LDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL  160 (266)
T ss_dssp             EECCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred             cccccccccc-cccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhcccccccc
Confidence            7777776663 355566667777777777777666666677778888888888888866666777788888888888888


Q ss_pred             cccchhhhhcCCCCCEEEcccCCCccccchhhhcCCCCCEEEccCCcCcc
Q 004747          457 SGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMG  506 (732)
Q Consensus       457 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~ls~N~l~~  506 (732)
                      ++..+..|..+++|++|+|++|+++ .+|+.+..+++|+.|++++|++..
T Consensus       161 ~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~C  209 (266)
T d1p9ag_         161 TELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC  209 (266)
T ss_dssp             SCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred             cccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCCC
Confidence            8777777888888888888888887 778888888888888888888753

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=5e-20  Score=184.24  Aligned_cols=182  Identities=26%  Similarity=0.250  Sum_probs=90.0

Q ss_pred             CCCCEEEeecccCCCccccccccccEEECCCCcCccccCchhhcccccCeeeCCCCccccccchhhhccCCCCEEEeccC
Q 004747          204 KSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHN  283 (732)
Q Consensus       204 ~~L~~L~Ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n  283 (732)
                      ..+.+++.+++.++..++....++++|+|++|.+++..+..|.++++|++|++++|+++. ++ .++.+++|++|++++|
T Consensus        10 ~~~~~v~C~~~~L~~iP~~lp~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~Ls~N   87 (266)
T d1p9ag_          10 ASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQ-VDGTLPVLGTLDLSHN   87 (266)
T ss_dssp             TTCCEEECTTSCCSSCCSCCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EE-CCSCCTTCCEEECCSS
T ss_pred             CCCeEEEccCCCCCeeCcCcCcCCCEEECcCCcCCCcCHHHhhccccccccccccccccc-cc-cccccccccccccccc
Confidence            334444555544443222222234555555555554444455556666666666666553 22 2345556666666666


Q ss_pred             CCCCcCccccccCcCCcEEEccCCCCCCCCchhhhhcCCCCCccEEeCCCCcccCCCcccccCCCCCCEEeccCccCCCc
Q 004747          284 HLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGE  363 (732)
Q Consensus       284 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~  363 (732)
                      +++. .+..+..+++|+.|++++|.+.+..+..+..+.   ++++|++++|.++...+..+..+++++.+++++|++++.
T Consensus        88 ~l~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~---~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~  163 (266)
T d1p9ag_          88 QLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLG---ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL  163 (266)
T ss_dssp             CCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCT---TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCC
T ss_pred             cccc-cccccccccccccccccccccceeecccccccc---ccccccccccccceeccccccccccchhccccccccccc
Confidence            5553 234455555555555555555543333333333   455555555555544444444455555555555555544


Q ss_pred             cccccCCCCCCCEEEccCCcCccccCccc
Q 004747          364 IPARIGNLTYLQVIDLSHNMLSGSIPLNI  392 (732)
Q Consensus       364 ~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~  392 (732)
                      .+..|..+++|++|+|++|+++ .+|..+
T Consensus       164 ~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~  191 (266)
T d1p9ag_         164 PAGLLNGLENLDTLLLQENSLY-TIPKGF  191 (266)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCC-CCCTTT
T ss_pred             CccccccccccceeecccCCCc-ccChhH
Confidence            4444555555555555555554 344433

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.81  E-value=6.3e-18  Score=176.18  Aligned_cols=199  Identities=25%  Similarity=0.238  Sum_probs=89.2

Q ss_pred             ccCeeeCCCCccccccchhhhccCCCCEEEeccCCCCCcCccccccCcCCcEEEccCCCCCCCCchhhhhcCCCCCccEE
Q 004747          250 SLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLL  329 (732)
Q Consensus       250 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~L~~L  329 (732)
                      ++++|+++++.++ .+|+.   .++|++|++++|+++ .+|..   ..+|+.|++++|+++ .++    .++  +.|++|
T Consensus        39 ~l~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~-~l~----~lp--~~L~~L  103 (353)
T d1jl5a_          39 QAHELELNNLGLS-SLPEL---PPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLK-ALS----DLP--PLLEYL  103 (353)
T ss_dssp             TCSEEECTTSCCS-CCCSC---CTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCS-CCC----SCC--TTCCEE
T ss_pred             CCCEEEeCCCCCC-CCCCC---CCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccc-hhh----hhc--cccccc
Confidence            3555555555554 23432   344555555555554 33332   234555555555554 122    111  145556


Q ss_pred             eCCCCcccCCCcccccCCCCCCEEeccCccCCCccccccCCCCCCCEEEccCCcCccccCccccCCcCcceeeccccccc
Q 004747          330 DLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLS  409 (732)
Q Consensus       330 ~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~  409 (732)
                      ++++|.+. .+|. ++.+++|+.|+++++.+... +.   ....+..+.+..+...  .+..+..++.++.+.+.+|...
T Consensus       104 ~L~~n~l~-~lp~-~~~l~~L~~L~l~~~~~~~~-~~---~~~~l~~l~~~~~~~~--~~~~l~~l~~l~~L~l~~n~~~  175 (353)
T d1jl5a_         104 GVSNNQLE-KLPE-LQNSSFLKIIDVDNNSLKKL-PD---LPPSLEFIAAGNNQLE--ELPELQNLPFLTAIYADNNSLK  175 (353)
T ss_dssp             ECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCS--SCCCCTTCTTCCEEECCSSCCS
T ss_pred             cccccccc-cccc-hhhhccceeecccccccccc-cc---ccccccchhhcccccc--ccccccccccceeccccccccc
Confidence            66655555 3442 34555566666655555422 11   1233444444444332  1223334444555555555443


Q ss_pred             ccCcccccCCCCCcEEEcccCceeeeccccCCCCCCCCEEEccCCcccccchhhhhcCCCCCEEEcccCCCc
Q 004747          410 GEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLS  481 (732)
Q Consensus       410 ~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  481 (732)
                      ....    .....+.+...++.+. .++ .+..++.|+.+++++|.... .+   ....++..+.+.++.+.
T Consensus       176 ~~~~----~~~~~~~l~~~~~~~~-~~~-~~~~l~~L~~l~l~~n~~~~-~~---~~~~~l~~~~~~~~~~~  237 (353)
T d1jl5a_         176 KLPD----LPLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LP---DLPPSLEALNVRDNYLT  237 (353)
T ss_dssp             SCCC----CCTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CC---SCCTTCCEEECCSSCCS
T ss_pred             cccc----cccccccccccccccc-ccc-cccccccccccccccccccc-cc---ccccccccccccccccc
Confidence            2211    1122334444444433 222 23455566666666655442 22   12344555555555554

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.79  E-value=1.6e-17  Score=173.00  Aligned_cols=137  Identities=25%  Similarity=0.266  Sum_probs=74.5

Q ss_pred             CCCEEECCCCCCCCcccccccCCCCCCEEECCCCCCCCCCCccccCCCCCCEEeCCCCCCCCCcCCchhhhcccCCcEEE
Q 004747          107 FLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLD  186 (732)
Q Consensus       107 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~~L~~L~  186 (732)
                      ++++|||+++.++ .+|+.   .++|++|++++|+|+ .+|..   ..+|+.|++++|.. + .++    .+++.|++|+
T Consensus        39 ~l~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l-~-~l~----~lp~~L~~L~  104 (353)
T d1jl5a_          39 QAHELELNNLGLS-SLPEL---PPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNL-K-ALS----DLPPLLEYLG  104 (353)
T ss_dssp             TCSEEECTTSCCS-CCCSC---CTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCC-S-CCC----SCCTTCCEEE
T ss_pred             CCCEEEeCCCCCC-CCCCC---CCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhccc-c-hhh----hhcccccccc
Confidence            3555666666555 34432   345666666666666 44543   24566666666632 1 222    1224677788


Q ss_pred             eeCcccccccCcccCCCCCCCEEEeecccCCCccccccccccEEECCCCcCccccCchhhcccccCeeeCCCCccc
Q 004747          187 FSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVV  262 (732)
Q Consensus       187 Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~  262 (732)
                      +++|.+. .+|. ++.+++|++|+++++.+.... .....+..+.+..+...  ....+..++.++.+++++|...
T Consensus       105 L~~n~l~-~lp~-~~~l~~L~~L~l~~~~~~~~~-~~~~~l~~l~~~~~~~~--~~~~l~~l~~l~~L~l~~n~~~  175 (353)
T d1jl5a_         105 VSNNQLE-KLPE-LQNSSFLKIIDVDNNSLKKLP-DLPPSLEFIAAGNNQLE--ELPELQNLPFLTAIYADNNSLK  175 (353)
T ss_dssp             CCSSCCS-SCCC-CTTCTTCCEEECCSSCCSCCC-CCCTTCCEEECCSSCCS--SCCCCTTCTTCCEEECCSSCCS
T ss_pred             ccccccc-cccc-hhhhccceeeccccccccccc-cccccccchhhcccccc--ccccccccccceeccccccccc
Confidence            8877776 4453 567788888888877765432 22333555555444332  2233444555555555555544

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=6.6e-21  Score=206.75  Aligned_cols=306  Identities=17%  Similarity=0.096  Sum_probs=135.3

Q ss_pred             cCCcEEEeeCcccccc----cCcccCCCCCCCEEEeecccCCCcccccc--------ccccEEECCCCcCcccc----Cc
Q 004747          180 MNLEKLDFSFNSFCGE----IPESLYYLKSLKHLDLEKNNLTGNVHDFY--------QSLLVLNLGSNRFSGTL----PC  243 (732)
Q Consensus       180 ~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~--------~~L~~L~L~~n~l~~~~----~~  243 (732)
                      .+|++|++++|.+++.    ++..+..+++|++|++++|.++......+        ............+....    ..
T Consensus        84 ~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (460)
T d1z7xw1          84 CKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLAS  163 (460)
T ss_dssp             CCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred             CCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhccccc
Confidence            3566677776666532    34456667777777777777654322111        01223333333222110    11


Q ss_pred             hhhcccccCeeeCCCCccccccch----hhh-ccCCCCEEEeccCCCCCc----CccccccCcCCcEEEccCCCCCCCCc
Q 004747          244 FAASAMSLTVLKLDNNSVVGGIPT----CIA-SLQALTHLNLSHNHLNYE----ISPRLVFFEKLLLLDLSFNDLSGPLP  314 (732)
Q Consensus       244 ~~~~~~~L~~L~Ls~n~l~~~~~~----~l~-~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~~p  314 (732)
                      .+.....++.++++.+........    .+. .......+++..+.+...    ....+...+.++.+++++|.+.....
T Consensus       164 ~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~~~  243 (460)
T d1z7xw1         164 VLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGM  243 (460)
T ss_dssp             HHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhcccccccc
Confidence            223345566666666554321111    111 112344555555544321    11223344556666666655432100


Q ss_pred             h-h-hhhcCCCCCccEEeCCCCcccCC----CcccccCCCCCCEEeccCccCCCcccccc-----CCCCCCCEEEccCCc
Q 004747          315 S-K-IAQTTEKAGLVLLDLSHNRFSGE----IPLKITELKSLQALFLSNNLLIGEIPARI-----GNLTYLQVIDLSHNM  383 (732)
Q Consensus       315 ~-~-~~~l~~~~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l-----~~l~~L~~L~Ls~n~  383 (732)
                      . . .........++.+++++|.+...    ....+...+.++.+++++|.+.+.....+     .....|+.+++++|.
T Consensus       244 ~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~  323 (460)
T d1z7xw1         244 AELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCS  323 (460)
T ss_dssp             HHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred             chhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhccccccccccccccccccc
Confidence            0 0 01111122455666666555421    11223334555555555555543211111     123345555555555


Q ss_pred             CccccCccccCCcCcceeecccccccccCcccccCCCCCcEEEcccCceeee----ccccC-CCCCCCCEEEccCCcccc
Q 004747          384 LSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGE----IPLTL-AGLKSLEIVDFSSNNLSG  458 (732)
Q Consensus       384 l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~----~p~~~-~~l~~L~~L~Ls~N~l~~  458 (732)
                      ++......+                    ...+...++|++|+|++|++++.    ++..+ ...+.|++|++++|.+++
T Consensus       324 l~~~~~~~l--------------------~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~  383 (460)
T d1z7xw1         324 FTAACCSHF--------------------SSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSD  383 (460)
T ss_dssp             CBGGGHHHH--------------------HHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCH
T ss_pred             hhhhhhhhc--------------------ccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCCh
Confidence            443211111                    11123344566666666655432    12222 234456666666666653


Q ss_pred             c----chhhhhcCCCCCEEEcccCCCccccchh----hh-cCCCCCEEEccCCcCc
Q 004747          459 S----LNDAITKWTNLKYFSIARNKLSGNLPNW----LF-SFQAIQMMDFSTNKFM  505 (732)
Q Consensus       459 ~----~~~~~~~l~~L~~L~L~~N~l~~~~p~~----~~-~~~~L~~L~ls~N~l~  505 (732)
                      .    +...+..+++|++|+|++|+++......    +. ....|+.|++.+|.+.
T Consensus       384 ~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~  439 (460)
T d1z7xw1         384 SSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS  439 (460)
T ss_dssp             HHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCC
T ss_pred             HHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCC
Confidence            2    2333445566666666666665322221    21 2234666666666654

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=9.6e-20  Score=197.42  Aligned_cols=191  Identities=20%  Similarity=0.089  Sum_probs=121.8

Q ss_pred             ccCCCCCcEEEcccCceeee-----ccccCCCCCCCCEEEccCCcccccc----hhhhhcCCCCCEEEcccCCCccccch
Q 004747          416 LDALDSLKILDISNNQISGE-----IPLTLAGLKSLEIVDFSSNNLSGSL----NDAITKWTNLKYFSIARNKLSGNLPN  486 (732)
Q Consensus       416 ~~~l~~L~~L~L~~n~l~~~-----~p~~~~~l~~L~~L~Ls~N~l~~~~----~~~~~~l~~L~~L~L~~N~l~~~~p~  486 (732)
                      +...+.++.+++++|.+...     ..........++.+++++|.+....    ...+...+.++.+++++|.+......
T Consensus       222 l~~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~  301 (460)
T d1z7xw1         222 VASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGAR  301 (460)
T ss_dssp             HHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHH
T ss_pred             ccccccccccchhhccccccccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            34566778888888765422     2334455677888888888776332    23445677888888888887643222


Q ss_pred             hh-----hcCCCCCEEEccCCcCcccCCcccccCccccCcCCCCCCCCCCcccCCCceeEEeEEEeecCCchhhhhhccc
Q 004747          487 WL-----FSFQAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFS  561 (732)
Q Consensus       487 ~~-----~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  561 (732)
                      .+     .....|+.+++++|.++......+                                        .........
T Consensus       302 ~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l----------------------------------------~~~~~~~~~  341 (460)
T d1z7xw1         302 LLCETLLEPGCQLESLWVKSCSFTAACCSHF----------------------------------------SSVLAQNRF  341 (460)
T ss_dssp             HHHHHHTSTTCCCCEEECTTSCCBGGGHHHH----------------------------------------HHHHHHCSS
T ss_pred             hhhccccccccccccccccccchhhhhhhhc----------------------------------------ccccccccc
Confidence            22     234578888888887653211110                                        011223567


Q ss_pred             ceEEEccCCccccc----CCcccc-cccCCceeecccccceec----CCc-ccCccCCcEEeCCCCcCcccCCcCC----
Q 004747          562 AVGMDLSDNLLHGT----IPKGLF-QLQGLEYLNLSFNFLDGQ----VPG-LYRLRSLRALDLSHNSLTGQIPGNI----  627 (732)
Q Consensus       562 L~~LdLs~N~l~g~----ip~~l~-~l~~L~~L~Ls~N~l~~~----ip~-l~~l~~L~~LdLs~N~l~~~ip~~l----  627 (732)
                      |++|||++|+++++    +++.+. ..+.|++|+|++|.++..    ++. +...++|++|||++|+++......+    
T Consensus       342 L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l  421 (460)
T d1z7xw1         342 LLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESV  421 (460)
T ss_dssp             CCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHH
T ss_pred             hhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHH
Confidence            88899999988753    333343 356789999999988742    233 5567889999999999876433222    


Q ss_pred             C-CCCCCCEEEcccCcceee
Q 004747          628 S-SLQELTLLNLSYNSFSGF  646 (732)
Q Consensus       628 ~-~l~~L~~L~ls~N~l~g~  646 (732)
                      . +...|+.|++.+|++...
T Consensus       422 ~~~~~~L~~l~l~~~~~~~~  441 (460)
T d1z7xw1         422 RQPGCLLEQLVLYDIYWSEE  441 (460)
T ss_dssp             TSTTCCCCEEECTTCCCCHH
T ss_pred             HhCCCccCEEECCCCCCCHH
Confidence            2 334689999999888754

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.75  E-value=6.5e-18  Score=164.41  Aligned_cols=168  Identities=20%  Similarity=0.303  Sum_probs=111.1

Q ss_pred             ccCCCCCcEEEcccCceeeeccccCCCCCCCCEEEccCCcccccchhhhhcCCCCCEEEcccCCCccccchhhhcCCCCC
Q 004747          416 LDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQ  495 (732)
Q Consensus       416 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~  495 (732)
                      +..+++|++|++++|.+++..|  +..+++|+++++++|.++. + ..+..+++|+.++++++...+.  ..+...+.+.
T Consensus        59 l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~~-i-~~l~~l~~L~~l~l~~~~~~~~--~~~~~~~~~~  132 (227)
T d1h6ua2          59 VQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN-V-SAIAGLQSIKTLDLTSTQITDV--TPLAGLSNLQ  132 (227)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC-C-GGGTTCTTCCEEECTTSCCCCC--GGGTTCTTCC
T ss_pred             HhcCCCCcEeecCCceeecccc--ccccccccccccccccccc-c-cccccccccccccccccccccc--chhccccchh
Confidence            4555666666666666654332  5566666666666666653 2 2355566666666666665432  2244556666


Q ss_pred             EEEccCCcCcccCCcccccCccccCcCCCCCCCCCCcccCCCceeEEeEEEeecCCchhhhhhcccceEEEccCCccccc
Q 004747          496 MMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGT  575 (732)
Q Consensus       496 ~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~  575 (732)
                      .+.++.+.+....+                                              ....+.|+.|++++|.+++.
T Consensus       133 ~l~~~~~~~~~~~~----------------------------------------------~~~~~~L~~L~l~~n~~~~~  166 (227)
T d1h6ua2         133 VLYLDLNQITNISP----------------------------------------------LAGLTNLQYLSIGNAQVSDL  166 (227)
T ss_dssp             EEECCSSCCCCCGG----------------------------------------------GGGCTTCCEEECCSSCCCCC
T ss_pred             hhhchhhhhchhhh----------------------------------------------hccccccccccccccccccc
Confidence            66666665532211                                              11256677888888888632


Q ss_pred             CCcccccccCCceeecccccceecCCcccCccCCcEEeCCCCcCcccCCcCCCCCCCCCEEEccc
Q 004747          576 IPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSY  640 (732)
Q Consensus       576 ip~~l~~l~~L~~L~Ls~N~l~~~ip~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~  640 (732)
                        ..++++++|++|+|++|++++ ++.+.++++|++|+|++|++++..|  ++++++|++|++++
T Consensus       167 --~~l~~l~~L~~L~Ls~n~l~~-l~~l~~l~~L~~L~Ls~N~lt~i~~--l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         167 --TPLANLSKLTTLKADDNKISD-ISPLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN  226 (227)
T ss_dssp             --GGGTTCTTCCEEECCSSCCCC-CGGGGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEE
T ss_pred             --hhhcccccceecccCCCccCC-ChhhcCCCCCCEEECcCCcCCCCcc--cccCCCCCEEEeeC
Confidence              237788899999999999874 6668888999999999999986543  78889999999874

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.72  E-value=5e-17  Score=158.02  Aligned_cols=206  Identities=22%  Similarity=0.321  Sum_probs=115.7

Q ss_pred             ccCeeeCCCCccccccchhhhccCCCCEEEeccCCCCCcCccccccCcCCcEEEccCCCCCCCCchhhhhcCCCCCccEE
Q 004747          250 SLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLL  329 (732)
Q Consensus       250 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~L~~L  329 (732)
                      ++..++++.+++++.+  .++.+.+|++|++.+|.++. + +.+..+++|++|++++|.+++..|  +..+.   +++++
T Consensus        20 ~~~~~~l~~~~~~d~~--~~~~l~~L~~L~l~~~~i~~-l-~~l~~l~~L~~L~ls~n~i~~~~~--l~~l~---~l~~l   90 (227)
T d1h6ua2          20 NAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTT-I-EGVQYLNNLIGLELKDNQITDLAP--LKNLT---KITEL   90 (227)
T ss_dssp             HHHHHHTTCSSTTSEE--CHHHHHTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCGG--GTTCC---SCCEE
T ss_pred             HHHHHHhCCCCcCCcC--CHHHcCCcCEEECCCCCCCc-c-hhHhcCCCCcEeecCCceeecccc--ccccc---ccccc
Confidence            3444566666666543  34667777777777777764 3 346777777777777777764322  33333   66777


Q ss_pred             eCCCCcccCCCcccccCCCCCCEEeccCccCCCccccccCCCCCCCEEEccCCcCccccCccccCCcCcceeeccccccc
Q 004747          330 DLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLS  409 (732)
Q Consensus       330 ~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~  409 (732)
                      ++++|.++ .++ .+..+++|+.++++++...+..  .+...+.++.+.++++.+....  .                  
T Consensus        91 ~~~~n~~~-~i~-~l~~l~~L~~l~l~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~--~------------------  146 (227)
T d1h6ua2          91 ELSGNPLK-NVS-AIAGLQSIKTLDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNIS--P------------------  146 (227)
T ss_dssp             ECCSCCCS-CCG-GGTTCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCG--G------------------
T ss_pred             cccccccc-ccc-cccccccccccccccccccccc--hhccccchhhhhchhhhhchhh--h------------------
Confidence            77776665 233 3556666777777666655332  2445556666666665554221  1                  


Q ss_pred             ccCcccccCCCCCcEEEcccCceeeeccccCCCCCCCCEEEccCCcccccchhhhhcCCCCCEEEcccCCCccccchhhh
Q 004747          410 GEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLF  489 (732)
Q Consensus       410 ~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~  489 (732)
                            +..+++|+.|++++|.+.+..  .+.++++|++|++++|++++. + .+..+++|++|++++|++++ ++ .+.
T Consensus       147 ------~~~~~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~Ls~n~l~~l-~-~l~~l~~L~~L~Ls~N~lt~-i~-~l~  214 (227)
T d1h6ua2         147 ------LAGLTNLQYLSIGNAQVSDLT--PLANLSKLTTLKADDNKISDI-S-PLASLPNLIEVHLKNNQISD-VS-PLA  214 (227)
T ss_dssp             ------GGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCC-G-GGGGCTTCCEEECTTSCCCB-CG-GGT
T ss_pred             ------hccccccccccccccccccch--hhcccccceecccCCCccCCC-h-hhcCCCCCCEEECcCCcCCC-Cc-ccc
Confidence                  234445555555555554322  245555566666666655532 2 25555666666666666553 22 255


Q ss_pred             cCCCCCEEEcc
Q 004747          490 SFQAIQMMDFS  500 (732)
Q Consensus       490 ~~~~L~~L~ls  500 (732)
                      .+++|++|+++
T Consensus       215 ~l~~L~~L~ls  225 (227)
T d1h6ua2         215 NTSNLFIVTLT  225 (227)
T ss_dssp             TCTTCCEEEEE
T ss_pred             cCCCCCEEEee
Confidence            56666666654

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.69  E-value=8.2e-17  Score=154.17  Aligned_cols=180  Identities=19%  Similarity=0.276  Sum_probs=130.2

Q ss_pred             ecccccccccCcccccCCCCCcEEEcccCceeeeccccCCCCCCCCEEEccCCcccccchhhhhcCCCCCEEEcccCCCc
Q 004747          402 IVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLS  481 (732)
Q Consensus       402 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  481 (732)
                      .+..+.+.+.++.  ..+.+|+.|++++|.+++. + .+..+++|++|++++|++++..  .++.+++|++|++++|+++
T Consensus        30 ~l~~~~~~~~~~~--~~L~~L~~L~l~~~~i~~l-~-~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~  103 (210)
T d1h6ta2          30 NLKKKSVTDAVTQ--NELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVK  103 (210)
T ss_dssp             HTTCSCTTSEECH--HHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCC
T ss_pred             HhCcCccCCccCH--HHhcCccEEECcCCCCCCc-h-hHhhCCCCCEEeCCCccccCcc--ccccCcccccccccccccc
Confidence            4444555444332  2355778888888887743 2 3667788888888888887643  3567888888888888887


Q ss_pred             cccchhhhcCCCCCEEEccCCcCcccCCcccccCccccCcCCCCCCCCCCcccCCCceeEEeEEEeecCCchhhhhhccc
Q 004747          482 GNLPNWLFSFQAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFS  561 (732)
Q Consensus       482 ~~~p~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  561 (732)
                      + +| .+..+++|+.|++++|.+.. ++.                                             ...++.
T Consensus       104 ~-l~-~l~~l~~L~~L~l~~~~~~~-~~~---------------------------------------------l~~l~~  135 (210)
T d1h6ta2         104 D-LS-SLKDLKKLKSLSLEHNGISD-ING---------------------------------------------LVHLPQ  135 (210)
T ss_dssp             C-GG-GGTTCTTCCEEECTTSCCCC-CGG---------------------------------------------GGGCTT
T ss_pred             c-cc-cccccccccccccccccccc-ccc---------------------------------------------cccccc
Confidence            3 44 47778888888888887642 110                                             112567


Q ss_pred             ceEEEccCCcccccCCcccccccCCceeecccccceecCCcccCccCCcEEeCCCCcCcccCCcCCCCCCCCCEEEccc
Q 004747          562 AVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSY  640 (732)
Q Consensus       562 L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~  640 (732)
                      ++.+++++|.+++  +..+..+++|+++++++|++++ ++.+.++++|+.|+|++|+++. +| .++.+++|++|++++
T Consensus       136 l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~-i~~l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         136 LESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISD-IVPLAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             CCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCC-CGGGTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEE
T ss_pred             ccccccccccccc--cccccccccccccccccccccc-cccccCCCCCCEEECCCCCCCC-Ch-hhcCCCCCCEEEccC
Confidence            7888888888873  3457788899999999999984 5568889999999999999984 55 588899999999874

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=1.1e-16  Score=157.17  Aligned_cols=182  Identities=19%  Similarity=0.164  Sum_probs=102.8

Q ss_pred             cccCCCCCcEEEcccCceeeecc-ccCCCCCCCCEEEccC-CcccccchhhhhcCCCCCEEEcccCCCccccc-hhhhcC
Q 004747          415 ELDALDSLKILDISNNQISGEIP-LTLAGLKSLEIVDFSS-NNLSGSLNDAITKWTNLKYFSIARNKLSGNLP-NWLFSF  491 (732)
Q Consensus       415 ~~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~~  491 (732)
                      .|.++++|++|++++|.+...++ ..|.+++.++++++.. |.+....+..+..+++|+++++++|.+....+ ..+..+
T Consensus        48 ~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l  127 (242)
T d1xwdc1          48 AFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSL  127 (242)
T ss_dssp             TTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBS
T ss_pred             Hhhccchhhhhhhccccccceeeccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccc
Confidence            34455555555555555543322 3345555555555442 44444444555555666666666655542211 122233


Q ss_pred             CCCCEEEccCCcCcccCCcccccCccccCcCCCCCCCCCCcccCCCceeEEeEEEeecCCchhhhhhcccceEEEccCCc
Q 004747          492 QAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVGMDLSDNL  571 (732)
Q Consensus       492 ~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~  571 (732)
                      +.+..+..+++.+.. ++...|..                                          ....++.|++++|+
T Consensus       128 ~~l~~~~~~n~~l~~-i~~~~~~~------------------------------------------~~~~l~~L~l~~n~  164 (242)
T d1xwdc1         128 QKVLLDIQDNINIHT-IERNSFVG------------------------------------------LSFESVILWLNKNG  164 (242)
T ss_dssp             SCEEEEEESCTTCCE-ECTTSSTT------------------------------------------SBSSCEEEECCSSC
T ss_pred             ccccccccccccccc-cccccccc------------------------------------------ccccceeeeccccc
Confidence            444444444444432 22111110                                          02356678888888


Q ss_pred             ccccCCcccccccCCcee-ecccccceecCCc-ccCccCCcEEeCCCCcCcccCCcCCCCCCCCCEEEccc
Q 004747          572 LHGTIPKGLFQLQGLEYL-NLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSY  640 (732)
Q Consensus       572 l~g~ip~~l~~l~~L~~L-~Ls~N~l~~~ip~-l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~  640 (732)
                      ++ .++.......+++++ ++++|+++...+. +.++++|++|||++|+++...+..|.+++.|+++++.+
T Consensus       165 l~-~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~~  234 (242)
T d1xwdc1         165 IQ-EIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYN  234 (242)
T ss_dssp             CC-EECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEES
T ss_pred             cc-ccccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCCC
Confidence            88 555555565665554 5677788743334 67789999999999999866566788888888777654

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=2.7e-16  Score=154.44  Aligned_cols=195  Identities=16%  Similarity=0.149  Sum_probs=114.6

Q ss_pred             EEcCCCCCcccccccccCCCCCCEEECCCCCCCCcccccccCCCCCCEEECCCCCCCCCC-CccccCCCCCCEEeCCCCC
Q 004747           87 INLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVV-PDAIMKLRNLRELILKGNP  165 (732)
Q Consensus        87 L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~Ls~n~  165 (732)
                      ++.++.+++ .+|..+.  +++++|++++|+++...+.+|.++++|++|++++|.+...+ +.+|.+++.++++++..+.
T Consensus        13 i~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n   89 (242)
T d1xwdc1          13 FLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN   89 (242)
T ss_dssp             EEEESCSCS-SCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCT
T ss_pred             EEEeCCCCC-CcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccc
Confidence            344445555 5565543  57899999999998655667899999999999999887644 5578888899888876644


Q ss_pred             CCCCcCCchhhhcccCCcEEEeeCcccccccCc-ccCCCCCCCEEEeecccCCCccccccc----cccEEECCCCcCccc
Q 004747          166 ELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPE-SLYYLKSLKHLDLEKNNLTGNVHDFYQ----SLLVLNLGSNRFSGT  240 (732)
Q Consensus       166 ~~~~~~p~~~~~l~~~L~~L~Ls~n~l~~~~p~-~l~~l~~L~~L~Ls~n~l~~~~~~~~~----~L~~L~L~~n~l~~~  240 (732)
                      .+....+..+..+ ++|+++++++|.+....+. .+..++.++.+...++.+....+..+.    .++.|++++|+++..
T Consensus        90 ~l~~~~~~~~~~l-~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i  168 (242)
T d1xwdc1          90 NLLYINPEAFQNL-PNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEI  168 (242)
T ss_dssp             TCCEECTTSEECC-TTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEE
T ss_pred             ccccccccccccc-ccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeeccccccccc
Confidence            5555566666666 7788888888877643221 123344444444555555543333321    255555555555532


Q ss_pred             cCchhhcccccCee-eCCCCccccccchhhhccCCCCEEEeccCCCC
Q 004747          241 LPCFAASAMSLTVL-KLDNNSVVGGIPTCIASLQALTHLNLSHNHLN  286 (732)
Q Consensus       241 ~~~~~~~~~~L~~L-~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  286 (732)
                      .+.. .+.++++.+ ++++|+++...+..|.++++|++|++++|+++
T Consensus       169 ~~~~-~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~  214 (242)
T d1xwdc1         169 HNCA-FNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH  214 (242)
T ss_dssp             CTTT-TTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCC
T ss_pred             cccc-ccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCC
Confidence            2222 222333222 34444444333333445555555555555554

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.67  E-value=1.1e-16  Score=151.96  Aligned_cols=179  Identities=23%  Similarity=0.326  Sum_probs=126.7

Q ss_pred             ceeecccccccccCcccccCCCCCcEEEcccCceeeeccccCCCCCCCCEEEccCCcccccchhhhhcCCCCCEEEcccC
Q 004747          399 LALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARN  478 (732)
Q Consensus       399 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N  478 (732)
                      ....+..+.+++.+.  ...++++++|++++|.++. + ..+..+++|++|++++|++++..+  ++.+++|++|++++|
T Consensus        21 i~~~l~~~~~~~~~~--~~~l~~l~~L~l~~~~i~~-l-~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n   94 (199)
T d2omxa2          21 MKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNN   94 (199)
T ss_dssp             HHHHTTCSSTTSEEC--HHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred             HHHHhCCCCCCCccC--HHHhcCCCEEECCCCCCCC-c-cccccCCCcCcCccccccccCccc--ccCCccccccccccc
Confidence            344555566555433  2356778888888888774 3 246678888888888888876543  778888888888888


Q ss_pred             CCccccchhhhcCCCCCEEEccCCcCcccCCcccccCccccCcCCCCCCCCCCcccCCCceeEEeEEEeecCCchhhhhh
Q 004747          479 KLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQ  558 (732)
Q Consensus       479 ~l~~~~p~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  558 (732)
                      .+.. ++ .+..++.|+.+++++|.+....+                                              ...
T Consensus        95 ~~~~-~~-~l~~l~~L~~L~l~~~~~~~~~~----------------------------------------------~~~  126 (199)
T d2omxa2          95 QIAD-IT-PLANLTNLTGLTLFNNQITDIDP----------------------------------------------LKN  126 (199)
T ss_dssp             CCCC-CG-GGTTCTTCSEEECCSSCCCCCGG----------------------------------------------GTT
T ss_pred             cccc-cc-ccccccccccccccccccccccc----------------------------------------------cch
Confidence            8763 33 36778888888888877653211                                              112


Q ss_pred             cccceEEEccCCcccccCCcccccccCCceeecccccceecCCcccCccCCcEEeCCCCcCcccCCcCCCCCCCCCEE
Q 004747          559 LFSAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQELTLL  636 (732)
Q Consensus       559 l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L  636 (732)
                      +++|+.|++++|++. .++ .+..+++|++|++++|++++ ++.++++++|++|++++|++++ +| .++.+++|+.|
T Consensus       127 l~~L~~L~l~~n~l~-~~~-~l~~~~~L~~L~l~~n~l~~-l~~l~~l~~L~~L~ls~N~i~~-i~-~l~~L~~L~~L  199 (199)
T d2omxa2         127 LTNLNRLELSSNTIS-DIS-ALSGLTSLQQLNFSSNQVTD-LKPLANLTTLERLDISSNKVSD-IS-VLAKLTNLESL  199 (199)
T ss_dssp             CTTCSEEECCSSCCC-CCG-GGTTCTTCSEEECCSSCCCC-CGGGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCSEE
T ss_pred             hhhhHHhhhhhhhhc-ccc-cccccccccccccccccccC-CccccCCCCCCEEECCCCCCCC-Cc-cccCCCCCCcC
Confidence            667788888888886 343 57788888888888888874 5557888888888888888875 33 46777777765

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.67  E-value=2.5e-16  Score=150.77  Aligned_cols=146  Identities=25%  Similarity=0.311  Sum_probs=100.0

Q ss_pred             ccCCCCCcEEEcccCceeeeccccCCCCCCCCEEEccCCcccccchhhhhcCCCCCEEEcccCCCccccchhhhcCCCCC
Q 004747          416 LDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQ  495 (732)
Q Consensus       416 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~  495 (732)
                      +..+++|++|++++|++++..  .+..+++|++|++++|++++ ++ .+..+++|+.|++++|.+..  ...+..++.++
T Consensus        64 l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~~~~~~~--~~~l~~l~~l~  137 (210)
T d1h6ta2          64 IQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISD--INGLVHLPQLE  137 (210)
T ss_dssp             GGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCC--CGGGGGCTTCC
T ss_pred             HhhCCCCCEEeCCCccccCcc--ccccCccccccccccccccc-cc-cccccccccccccccccccc--ccccccccccc
Confidence            455667777777777776432  24567777777777777764 33 36667777777777777652  23466777777


Q ss_pred             EEEccCCcCcccCCcccccCccccCcCCCCCCCCCCcccCCCceeEEeEEEeecCCchhhhhhcccceEEEccCCccccc
Q 004747          496 MMDFSTNKFMGFIPDGNFNFSLNFNKSDIGRSMPAKSFVLPRSMVIRISVTAIDTNELSFNYQLFSAVGMDLSDNLLHGT  575 (732)
Q Consensus       496 ~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~  575 (732)
                      .+++++|.+++..+                                              ...+++|+.+++++|++++ 
T Consensus       138 ~l~~~~n~l~~~~~----------------------------------------------~~~l~~L~~l~l~~n~l~~-  170 (210)
T d1h6ta2         138 SLYLGNNKITDITV----------------------------------------------LSRLTKLDTLSLEDNQISD-  170 (210)
T ss_dssp             EEECCSSCCCCCGG----------------------------------------------GGGCTTCSEEECCSSCCCC-
T ss_pred             cccccccccccccc----------------------------------------------ccccccccccccccccccc-
Confidence            77777777653211                                              1126677888888888874 


Q ss_pred             CCcccccccCCceeecccccceecCCcccCccCCcEEeCCC
Q 004747          576 IPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSH  616 (732)
Q Consensus       576 ip~~l~~l~~L~~L~Ls~N~l~~~ip~l~~l~~L~~LdLs~  616 (732)
                      ++ .+.++++|++|+|++|+++ .+|.+.++++|++|+|++
T Consensus       171 i~-~l~~l~~L~~L~Ls~N~i~-~l~~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         171 IV-PLAGLTKLQNLYLSKNHIS-DLRALAGLKNLDVLELFS  209 (210)
T ss_dssp             CG-GGTTCTTCCEEECCSSCCC-BCGGGTTCTTCSEEEEEE
T ss_pred             cc-cccCCCCCCEEECCCCCCC-CChhhcCCCCCCEEEccC
Confidence            44 3778888888888888887 567788888888888863

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.66  E-value=1.3e-16  Score=150.38  Aligned_cols=130  Identities=19%  Similarity=0.259  Sum_probs=77.6

Q ss_pred             CEEeccCccCCCccccccCCCCCCCEEEccCCcCccccCccccCCcCcceeecccccccccCcccccCCCCCcEEEcccC
Q 004747          351 QALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNN  430 (732)
Q Consensus       351 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n  430 (732)
                      +.++.++++++ .+|..+.  +++++|+|++|++++.++                       +..|.++++|+.|++++|
T Consensus        11 ~~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~-----------------------~~~f~~l~~L~~L~L~~N   64 (192)
T d1w8aa_          11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISS-----------------------DGLFGRLPHLVKLELKRN   64 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCC-----------------------SCSGGGCTTCCEEECCSS
T ss_pred             CEEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCccccc-----------------------ccccCCCceEeeeecccc
Confidence            35555666555 4444332  455555555555543222                       233455666666666666


Q ss_pred             ceeeeccccCCCCCCCCEEEccCCcccccchhhhhcCCCCCEEEcccCCCccccchhhhcCCCCCEEEccCCcCcc
Q 004747          431 QISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMG  506 (732)
Q Consensus       431 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~ls~N~l~~  506 (732)
                      .+.+..+..+..+++|++|++++|+++...+.+|.++++|++|+|++|+|++..|..|..+++|+++++++|++.+
T Consensus        65 ~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~  140 (192)
T d1w8aa_          65 QLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             CCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             ccccccccccccccccceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCccccccccccccccc
Confidence            6665556666666666666666666665555566666666666666666665556666666666777776666643

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.64  E-value=1.9e-16  Score=149.37  Aligned_cols=173  Identities=23%  Similarity=0.287  Sum_probs=122.4

Q ss_pred             ccEEeCCCCcccCCCcccccCCCCCCEEeccCccCCCcc-ccccCCCCCCCEEEccCCcCccccCccccCCcCcceeecc
Q 004747          326 LVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEI-PARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVN  404 (732)
Q Consensus       326 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~  404 (732)
                      .+.++.++++++ .+|..+.  +++++|+|++|++++.+ +..|.++++|+.|++++|.+.+..+..+..+++|+.|+++
T Consensus        10 ~~~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls   86 (192)
T d1w8aa_          10 GTTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCEEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeec
Confidence            345666666666 5565443  46777777777776533 4456667777777777777776666777777777777777


Q ss_pred             cccccccCcccccCCCCCcEEEcccCceeeeccccCCCCCCCCEEEccCCcccccch-hhhhcCCCCCEEEcccCCCccc
Q 004747          405 NNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLN-DAITKWTNLKYFSIARNKLSGN  483 (732)
Q Consensus       405 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~  483 (732)
                      +|++.+..+..|.++++|++|+|++|++++..+..|..+++|++++|++|.+..... .++.  ..++.+.+..+.+...
T Consensus        87 ~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~~--~~l~~~~l~~~~~~c~  164 (192)
T d1w8aa_          87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFA--EWLRKKSLNGGAARCG  164 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHH--HHHHHHCCSGGGCBBC
T ss_pred             cccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchHHHh--hhhhhhcccCCCeEeC
Confidence            777777777778888999999999999998888888999999999999998875432 2222  2345566777777766


Q ss_pred             cchhhhcCCCCCEEEccCCcCcc
Q 004747          484 LPNWLFSFQAIQMMDFSTNKFMG  506 (732)
Q Consensus       484 ~p~~~~~~~~L~~L~ls~N~l~~  506 (732)
                      .|..+   ..++.++++.|.+..
T Consensus       165 ~p~~l---~~~~l~~L~~n~l~C  184 (192)
T d1w8aa_         165 APSKV---RDVQIKDLPHSEFKC  184 (192)
T ss_dssp             SSTTT---TTSBGGGSCTTTCCC
T ss_pred             CChhh---cCCEeeecCHhhCcC
Confidence            66544   456677888887753

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.62  E-value=2.4e-15  Score=142.54  Aligned_cols=179  Identities=29%  Similarity=0.397  Sum_probs=100.8

Q ss_pred             CeeeCCCCccccccchhhhccCCCCEEEeccCCCCCcCccccccCcCCcEEEccCCCCCCCCchhhhhcCCCCCccEEeC
Q 004747          252 TVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDL  331 (732)
Q Consensus       252 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~L~~L~L  331 (732)
                      ....++.+.+++.++  ...++++++|++++|.++..  +.+..+++|++|++++|++++..|  +..++   +|++|++
T Consensus        21 i~~~l~~~~~~~~~~--~~~l~~l~~L~l~~~~i~~l--~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~---~L~~L~l   91 (199)
T d2omxa2          21 MKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDITP--LKNLT---KLVDILM   91 (199)
T ss_dssp             HHHHTTCSSTTSEEC--HHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCT---TCCEEEC
T ss_pred             HHHHhCCCCCCCccC--HHHhcCCCEEECCCCCCCCc--cccccCCCcCcCccccccccCccc--ccCCc---ccccccc
Confidence            344556666654433  34566777777777776532  345666666666666666664221  33333   5666666


Q ss_pred             CCCcccCCCcccccCCCCCCEEeccCccCCCccccccCCCCCCCEEEccCCcCccccCccccCCcCcceeeccccccccc
Q 004747          332 SHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGE  411 (732)
Q Consensus       332 s~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~  411 (732)
                      ++|.+. .++ .+..++.|+.|++++|.....  ..+..+++|+.+++++|.+.. +                       
T Consensus        92 ~~n~~~-~~~-~l~~l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~-~-----------------------  143 (199)
T d2omxa2          92 NNNQIA-DIT-PLANLTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTISD-I-----------------------  143 (199)
T ss_dssp             CSSCCC-CCG-GGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCCC-C-----------------------
T ss_pred             cccccc-ccc-ccccccccccccccccccccc--cccchhhhhHHhhhhhhhhcc-c-----------------------
Confidence            666655 233 355666666666666655532  234555666666666665542 1                       


Q ss_pred             CcccccCCCCCcEEEcccCceeeeccccCCCCCCCCEEEccCCcccccchhhhhcCCCCCEE
Q 004747          412 IQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYF  473 (732)
Q Consensus       412 ~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  473 (732)
                        +.+..+++|+.|++++|++++. + .+.++++|++|++++|++++. + .+..+++|+.|
T Consensus       144 --~~l~~~~~L~~L~l~~n~l~~l-~-~l~~l~~L~~L~ls~N~i~~i-~-~l~~L~~L~~L  199 (199)
T d2omxa2         144 --SALSGLTSLQQLNFSSNQVTDL-K-PLANLTTLERLDISSNKVSDI-S-VLAKLTNLESL  199 (199)
T ss_dssp             --GGGTTCTTCSEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCCC-G-GGGGCTTCSEE
T ss_pred             --ccccccccccccccccccccCC-c-cccCCCCCCEEECCCCCCCCC-c-cccCCCCCCcC
Confidence              1244555666666666666543 2 255666666777766666642 2 35566666654

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=3.3e-15  Score=149.96  Aligned_cols=35  Identities=20%  Similarity=0.179  Sum_probs=19.0

Q ss_pred             cCCcEEEeeCcccccccCcccCCCCCCCEEEeecc
Q 004747          180 MNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKN  214 (732)
Q Consensus       180 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n  214 (732)
                      ++|++|++++|.+++..+..+..+++|++|+++++
T Consensus        71 ~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c  105 (284)
T d2astb2          71 SKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGC  105 (284)
T ss_dssp             CCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTC
T ss_pred             CCcccccccccCCCcHHHHHHhcCCCCcCcccccc
Confidence            45555555555555444555555566666666553

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=4.7e-15  Score=148.81  Aligned_cols=160  Identities=22%  Similarity=0.201  Sum_probs=72.7

Q ss_pred             hhhcccccCeeeCCCCccccccchhhhccCCCCEEEeccC-CCCCc-CccccccCcCCcEEEccCCC-CCCC-Cchhhhh
Q 004747          244 FAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHN-HLNYE-ISPRLVFFEKLLLLDLSFND-LSGP-LPSKIAQ  319 (732)
Q Consensus       244 ~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n-~l~~~-~~~~l~~l~~L~~L~Ls~n~-l~~~-~p~~~~~  319 (732)
                      .+..+++|++|+++++.+++..+..++.+++|++|+++++ .++.. +......+++|++|+++++. ++.. +...+..
T Consensus        66 l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~  145 (284)
T d2astb2          66 ILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAH  145 (284)
T ss_dssp             HHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHH
T ss_pred             HHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcc
Confidence            3455566666666666655555555556666666666654 33321 11122345566666666542 2211 1111111


Q ss_pred             cCCCCCccEEeCCCCc--ccCC-CcccccCCCCCCEEeccCc-cCCCccccccCCCCCCCEEEccCC-cCccccCccccC
Q 004747          320 TTEKAGLVLLDLSHNR--FSGE-IPLKITELKSLQALFLSNN-LLIGEIPARIGNLTYLQVIDLSHN-MLSGSIPLNIVG  394 (732)
Q Consensus       320 l~~~~~L~~L~Ls~n~--l~~~-~p~~l~~l~~L~~L~Ls~n-~l~~~~p~~l~~l~~L~~L~Ls~n-~l~~~~p~~~~~  394 (732)
                      ..  ++|+.|+++++.  ++.. +......+++|++|++++| .+++.....+.++++|++|++++| .+++.....+..
T Consensus       146 ~~--~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~  223 (284)
T d2astb2         146 VS--ETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGE  223 (284)
T ss_dssp             SC--TTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGG
T ss_pred             cc--cccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhc
Confidence            11  245566655432  2211 1122234555666666554 244444445555555555555553 343333333333


Q ss_pred             CcCcceeeccc
Q 004747          395 CFQLLALIVNN  405 (732)
Q Consensus       395 ~~~L~~L~l~~  405 (732)
                      +++|+.|++.+
T Consensus       224 ~~~L~~L~l~~  234 (284)
T d2astb2         224 IPTLKTLQVFG  234 (284)
T ss_dssp             CTTCCEEECTT
T ss_pred             CCCCCEEeeeC
Confidence            33444444333

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.47  E-value=3.3e-14  Score=147.14  Aligned_cols=254  Identities=19%  Similarity=0.195  Sum_probs=135.6

Q ss_pred             cCchhhcccccCeeeCCCCccccccc----hhhhccCCCCEEEeccCCCCCc----------CccccccCcCCcEEEccC
Q 004747          241 LPCFAASAMSLTVLKLDNNSVVGGIP----TCIASLQALTHLNLSHNHLNYE----------ISPRLVFFEKLLLLDLSF  306 (732)
Q Consensus       241 ~~~~~~~~~~L~~L~Ls~n~l~~~~~----~~l~~l~~L~~L~L~~n~l~~~----------~~~~l~~l~~L~~L~Ls~  306 (732)
                      +...+.....|+.|+|++|.+.....    ..+...++|+.++++++.....          +...+..+++|+.|++++
T Consensus        23 l~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~  102 (344)
T d2ca6a1          23 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD  102 (344)
T ss_dssp             TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred             HHHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccc
Confidence            34455666777888888777653322    2334556777777776644311          112233455666666666


Q ss_pred             CCCCCCCchhhhh-cCCCCCccEEeCCCCcccCCCcccccCCCCCCEEeccCccCCCccccccCCCCCCCEEEccCCcCc
Q 004747          307 NDLSGPLPSKIAQ-TTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLS  385 (732)
Q Consensus       307 n~l~~~~p~~~~~-l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~  385 (732)
                      |.++......+.. +...++|+.|++++|.+.......++.  .+..+         .........+.|+.+++++|.+.
T Consensus       103 n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~--~l~~~---------~~~~~~~~~~~L~~l~l~~n~i~  171 (344)
T d2ca6a1         103 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIAR--ALQEL---------AVNKKAKNAPPLRSIICGRNRLE  171 (344)
T ss_dssp             CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHH--HHHHH---------HHHHHHHTCCCCCEEECCSSCCT
T ss_pred             cccccccccchhhhhcccccchheecccccccccccccccc--ccccc---------ccccccccCcccceeeccccccc
Confidence            6665432222211 112225666666665543110000000  00000         00000122344455555554443


Q ss_pred             cc----cCccccCCcCcceeeccccccccc-----CcccccCCCCCcEEEcccCceeee----ccccCCCCCCCCEEEcc
Q 004747          386 GS----IPLNIVGCFQLLALIVNNNNLSGE-----IQPELDALDSLKILDISNNQISGE----IPLTLAGLKSLEIVDFS  452 (732)
Q Consensus       386 ~~----~p~~~~~~~~L~~L~l~~n~l~~~-----~~~~~~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~Ls  452 (732)
                      ..    +...+..+..++.+++++|.+...     +...+..+++|+.|++++|.++..    +...+..+++|++|+++
T Consensus       172 ~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls  251 (344)
T d2ca6a1         172 NGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLN  251 (344)
T ss_dssp             GGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECT
T ss_pred             ccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhh
Confidence            21    112223344555555555554421     223456678888888888887643    33456778889999999


Q ss_pred             CCcccccchhh----hhc--CCCCCEEEcccCCCccc----cchhhh-cCCCCCEEEccCCcCc
Q 004747          453 SNNLSGSLNDA----ITK--WTNLKYFSIARNKLSGN----LPNWLF-SFQAIQMMDFSTNKFM  505 (732)
Q Consensus       453 ~N~l~~~~~~~----~~~--l~~L~~L~L~~N~l~~~----~p~~~~-~~~~L~~L~ls~N~l~  505 (732)
                      +|.+++.....    +..  .+.|++|++++|++...    +...+. ..++|+.|++++|++.
T Consensus       252 ~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~  315 (344)
T d2ca6a1         252 DCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS  315 (344)
T ss_dssp             TCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             cCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCC
Confidence            99887543332    332  36789999999988643    233443 5788999999999885

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.45  E-value=2.1e-14  Score=148.62  Aligned_cols=244  Identities=20%  Similarity=0.179  Sum_probs=127.9

Q ss_pred             ccccCCCCCCEEECCCCCCCCc----ccccccCCCCCCEEECCCCCCCCCC---C-------ccccCCCCCCEEeCCCCC
Q 004747          100 PRLCKLSFLEFLVLSSNAFTGR----ISTCFGGLSGLKTLDLSYNKFVGVV---P-------DAIMKLRNLRELILKGNP  165 (732)
Q Consensus       100 ~~l~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~---p-------~~~~~l~~L~~L~Ls~n~  165 (732)
                      ..+.+...|++|+|++|.+...    +...+...++|+.|+++++......   |       ..+..+++|++|+|++| 
T Consensus        25 ~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n-  103 (344)
T d2ca6a1          25 AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN-  103 (344)
T ss_dssp             HHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC-
T ss_pred             HHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccc-
Confidence            3456677788888887776543    3344666777888888776543211   1       22345566777777666 


Q ss_pred             CCCCc----CCchhhhcccCCcEEEeeCcccccccCcc-------------cCCCCCCCEEEeecccCCCcccccccccc
Q 004747          166 ELGGV----FPGWVGNFSMNLEKLDFSFNSFCGEIPES-------------LYYLKSLKHLDLEKNNLTGNVHDFYQSLL  228 (732)
Q Consensus       166 ~~~~~----~p~~~~~l~~~L~~L~Ls~n~l~~~~p~~-------------l~~l~~L~~L~Ls~n~l~~~~~~~~~~L~  228 (732)
                      .++..    +...+... ++|++|++++|.+.......             ....+.|+.+++++|.++.....      
T Consensus       104 ~i~~~~~~~l~~~l~~~-~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~------  176 (344)
T d2ca6a1         104 AFGPTAQEPLIDFLSKH-TPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMK------  176 (344)
T ss_dssp             CCCTTTHHHHHHHHHHC-TTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHH------
T ss_pred             ccccccccchhhhhccc-ccchheecccccccccccccccccccccccccccccCcccceeecccccccccccc------
Confidence            22222    11122223 45666666666543211100             12334455555555544321111      


Q ss_pred             EEECCCCcCccccCchhhcccccCeeeCCCCccccc-----cchhhhccCCCCEEEeccCCCCCc----CccccccCcCC
Q 004747          229 VLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGG-----IPTCIASLQALTHLNLSHNHLNYE----ISPRLVFFEKL  299 (732)
Q Consensus       229 ~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~-----~~~~l~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L  299 (732)
                                 .+...+..++.|++|++++|.+...     +...+..+++|++|++++|.++..    +...+..+++|
T Consensus       177 -----------~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L  245 (344)
T d2ca6a1         177 -----------EWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNL  245 (344)
T ss_dssp             -----------HHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTC
T ss_pred             -----------cccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccc
Confidence                       1223344455666666666665421     122344566677777776665432    23445566777


Q ss_pred             cEEEccCCCCCCCCchhhhhc---CCCCCccEEeCCCCcccCC----Cccccc-CCCCCCEEeccCccCCC
Q 004747          300 LLLDLSFNDLSGPLPSKIAQT---TEKAGLVLLDLSHNRFSGE----IPLKIT-ELKSLQALFLSNNLLIG  362 (732)
Q Consensus       300 ~~L~Ls~n~l~~~~p~~~~~l---~~~~~L~~L~Ls~n~l~~~----~p~~l~-~l~~L~~L~Ls~n~l~~  362 (732)
                      ++|++++|.+++.-...+...   .....|++|++++|.++..    +...+. ++++|++|++++|.+..
T Consensus       246 ~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         246 RELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             CEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             hhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence            777777777664322222211   1123577777777776532    222232 45678888888887753

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.43  E-value=1.7e-13  Score=118.03  Aligned_cols=86  Identities=36%  Similarity=0.395  Sum_probs=77.3

Q ss_pred             cccceEEEccCCcccccCCcccccccCCceeecccccceecCCcccCccCCcEEeCCCCcCcccC-CcCCCCCCCCCEEE
Q 004747          559 LFSAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQI-PGNISSLQELTLLN  637 (732)
Q Consensus       559 l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~l~~l~~L~~LdLs~N~l~~~i-p~~l~~l~~L~~L~  637 (732)
                      +..|++||+++|+++ .+|+.++.+++|+.|++++|.++ .+|.+.++++|++|++++|+++... +..+..+++|++|+
T Consensus        19 l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~-~l~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L~~L~   96 (124)
T d1dcea3          19 LLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLN   96 (124)
T ss_dssp             GTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCGGGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEE
T ss_pred             CCCCCEEECCCCccC-cchhhhhhhhccccccccccccc-ccCccccccccCeEECCCCccCCCCCchhhcCCCCCCEEE
Confidence            778999999999998 78989999999999999999998 5677999999999999999998653 35688999999999


Q ss_pred             cccCcceee
Q 004747          638 LSYNSFSGF  646 (732)
Q Consensus       638 ls~N~l~g~  646 (732)
                      +++|++++.
T Consensus        97 l~~N~i~~~  105 (124)
T d1dcea3          97 LQGNSLCQE  105 (124)
T ss_dssp             CTTSGGGGS
T ss_pred             CCCCcCCcC
Confidence            999999754

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=3.6e-13  Score=122.09  Aligned_cols=127  Identities=21%  Similarity=0.216  Sum_probs=74.9

Q ss_pred             cCCCCCCEEeccCccCCCccccccCCCCCCCEEEccCCcCccccCccccCCcCcceeecccccccccCcccccCCCCCcE
Q 004747          345 TELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKI  424 (732)
Q Consensus       345 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  424 (732)
                      .+..++++|+|++|+++ .++..+..+++|+.|++++|.++                        ..  +.+..+++|++
T Consensus        15 ~n~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~------------------------~l--~~~~~l~~L~~   67 (162)
T d1a9na_          15 TNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR------------------------KL--DGFPLLRRLKT   67 (162)
T ss_dssp             ECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCC------------------------EE--CCCCCCSSCCE
T ss_pred             cCcCcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCC------------------------cc--CCcccCcchhh
Confidence            34455666666666655 23444445555666666666554                        21  12455666777


Q ss_pred             EEcccCceeeeccccCCCCCCCCEEEccCCcccccch-hhhhcCCCCCEEEcccCCCcccc---chhhhcCCCCCEEE
Q 004747          425 LDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLN-DAITKWTNLKYFSIARNKLSGNL---PNWLFSFQAIQMMD  498 (732)
Q Consensus       425 L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~---p~~~~~~~~L~~L~  498 (732)
                      |++++|+++...+..+..+++|+.|++++|+++.... ..+..+++|++|++++|+++...   +..+..+++|++||
T Consensus        68 L~ls~N~i~~l~~~~~~~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          68 LLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             EECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             hhcccccccCCCccccccccccccceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            7777777765444445566777777777777764321 34566777777777777775321   22466677777776

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=5.4e-13  Score=120.91  Aligned_cols=123  Identities=20%  Similarity=0.082  Sum_probs=83.1

Q ss_pred             CccEEeCCCCcccCCCcccccCCCCCCEEeccCccCCCccccccCCCCCCCEEEccCCcCccccCccccCCcCcceeecc
Q 004747          325 GLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVN  404 (732)
Q Consensus       325 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~  404 (732)
                      .+++|+|++|+++ .++..+..+++|+.|++++|.++ .++ .+..+++|++|++++|.++...+..+..++        
T Consensus        19 ~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~-~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~--------   87 (162)
T d1a9na_          19 RDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALP--------   87 (162)
T ss_dssp             SCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCC-EEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCT--------
T ss_pred             cCcEEECCCCCCC-ccCccccccccCCEEECCCCCCC-ccC-CcccCcchhhhhcccccccCCCcccccccc--------
Confidence            7999999999998 56777788999999999999998 443 588899999999999999854333333444        


Q ss_pred             cccccccCcccccCCCCCcEEEcccCceeeecc-ccCCCCCCCCEEEccCCcccccc---hhhhhcCCCCCEEE
Q 004747          405 NNNLSGEIQPELDALDSLKILDISNNQISGEIP-LTLAGLKSLEIVDFSSNNLSGSL---NDAITKWTNLKYFS  474 (732)
Q Consensus       405 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~---~~~~~~l~~L~~L~  474 (732)
                                      +|+.|++++|+++.... ..+..+++|++|++++|.++...   +..+..+++|++||
T Consensus        88 ----------------~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          88 ----------------DLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             ----------------TCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             ----------------ccccceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence                            45555555555442211 23455566666666666554321   12355566676665

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.35  E-value=2e-12  Score=111.17  Aligned_cols=41  Identities=22%  Similarity=0.303  Sum_probs=17.3

Q ss_pred             cCCCCCcEEEcccCceeeec-cccCCCCCCCCEEEccCCccc
Q 004747          417 DALDSLKILDISNNQISGEI-PLTLAGLKSLEIVDFSSNNLS  457 (732)
Q Consensus       417 ~~l~~L~~L~L~~n~l~~~~-p~~~~~l~~L~~L~Ls~N~l~  457 (732)
                      ..+++|++|++++|++++.. ...+..+++|++|++++|+++
T Consensus        62 ~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          62 ANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             TTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             ccccccCeEECCCCccCCCCCchhhcCCCCCCEEECCCCcCC
Confidence            34444444444444444221 123344444444444444443

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.13  E-value=8.5e-13  Score=123.99  Aligned_cols=129  Identities=22%  Similarity=0.306  Sum_probs=60.0

Q ss_pred             cccccCCCCCCEEeccCccCCCccccccCCCCCCCEEEccCCcCccccCccccCCcCcceeecccccccccCcccccCCC
Q 004747          341 PLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALD  420 (732)
Q Consensus       341 p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~  420 (732)
                      +..+..+++|++|+|++|+++. ++ .+..+++|++|++++|.++ .+|.....                        ++
T Consensus        41 ~~sl~~L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~------------------------~~   93 (198)
T d1m9la_          41 DATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAV------------------------AD   93 (198)
T ss_dssp             HHHHHHTTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEEC-SCSSHHHH------------------------HH
T ss_pred             hhHHhcccccceeECcccCCCC-cc-cccCCccccChhhcccccc-cccccccc------------------------cc
Confidence            3344455555555555555542 22 2445555555555555554 22322222                        23


Q ss_pred             CCcEEEcccCceeeeccccCCCCCCCCEEEccCCcccccch-hhhhcCCCCCEEEcccCCCccccch----------hhh
Q 004747          421 SLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLN-DAITKWTNLKYFSIARNKLSGNLPN----------WLF  489 (732)
Q Consensus       421 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~p~----------~~~  489 (732)
                      +|+.|++++|+++. ++ .+..+++|++|++++|+++.... ..+..+++|+.|++++|++....+.          .+.
T Consensus        94 ~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~  171 (198)
T d1m9la_          94 TLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVK  171 (198)
T ss_dssp             HCCEEECSEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHH
T ss_pred             cccccccccccccc-cc-cccccccccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHH
Confidence            34444444444442 11 23344455555555555543211 2344555555555555554432221          245


Q ss_pred             cCCCCCEEE
Q 004747          490 SFQAIQMMD  498 (732)
Q Consensus       490 ~~~~L~~L~  498 (732)
                      .+++|+.||
T Consensus       172 ~lp~L~~LD  180 (198)
T d1m9la_         172 RLPNLKKLD  180 (198)
T ss_dssp             HCSSCCEES
T ss_pred             HCCCcCEeC
Confidence            566777765

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.11  E-value=4.1e-12  Score=119.23  Aligned_cols=109  Identities=23%  Similarity=0.208  Sum_probs=52.8

Q ss_pred             chhhhcccCCcEEEeeCcccccccCcccCCCCCCCEEEeecccCCCcccc--ccccccEEECCCCcCccccCchhhcccc
Q 004747          173 GWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHD--FYQSLLVLNLGSNRFSGTLPCFAASAMS  250 (732)
Q Consensus       173 ~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~--~~~~L~~L~L~~n~l~~~~~~~~~~~~~  250 (732)
                      ..+..+ ++|++|+|++|.++. ++ .+.++++|++|++++|.++...+.  .+..|++|++++|+++..  ..+..+++
T Consensus        42 ~sl~~L-~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~i~~l--~~~~~l~~  116 (198)
T d1m9la_          42 ATLSTL-KACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASL--SGIEKLVN  116 (198)
T ss_dssp             HHHHHT-TTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEEECCCH--HHHHHHHH
T ss_pred             hHHhcc-cccceeECcccCCCC-cc-cccCCccccChhhccccccccccccccccccccccccccccccc--cccccccc
Confidence            344444 555555555555552 22 355556666666666655432111  112244444444444421  23445555


Q ss_pred             cCeeeCCCCccccccc-hhhhccCCCCEEEeccCCCC
Q 004747          251 LTVLKLDNNSVVGGIP-TCIASLQALTHLNLSHNHLN  286 (732)
Q Consensus       251 L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~  286 (732)
                      |++|++++|+++.... ..+..+++|++|++++|.+.
T Consensus       117 L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~  153 (198)
T d1m9la_         117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHH
T ss_pred             ccccccccchhccccccccccCCCccceeecCCCccc
Confidence            6666666555543211 23455555666666555543

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=1.7e-10  Score=103.35  Aligned_cols=104  Identities=17%  Similarity=0.106  Sum_probs=46.1

Q ss_pred             EEeccCccCCCccccccCCCCCCCEEEccCCc-CccccCccccCCcCcceeecccccccccCcccccCCCCCcEEEcccC
Q 004747          352 ALFLSNNLLIGEIPARIGNLTYLQVIDLSHNM-LSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNN  430 (732)
Q Consensus       352 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~-l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n  430 (732)
                      .++.+++.+. ..|..+..+++|++|++++|+ ++...+..|.++++|+.|++++|+++...+..|..+++|++|+|++|
T Consensus        12 ~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N   90 (156)
T d2ifga3          12 GLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN   90 (156)
T ss_dssp             CEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred             eEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCC
Confidence            3444444433 233334444444444443332 33222233333333333333344433333444555556666666666


Q ss_pred             ceeeeccccCCCCCCCCEEEccCCccc
Q 004747          431 QISGEIPLTLAGLKSLEIVDFSSNNLS  457 (732)
Q Consensus       431 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~  457 (732)
                      +++...+..+.. .+|+.|+|++|.+.
T Consensus        91 ~l~~l~~~~~~~-~~l~~L~L~~Np~~  116 (156)
T d2ifga3          91 ALESLSWKTVQG-LSLQELVLSGNPLH  116 (156)
T ss_dssp             CCSCCCSTTTCS-CCCCEEECCSSCCC
T ss_pred             CCcccChhhhcc-ccccccccCCCccc
Confidence            665332233332 34666666666554

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=2.7e-10  Score=101.99  Aligned_cols=85  Identities=19%  Similarity=0.130  Sum_probs=46.7

Q ss_pred             CCCCEEECCCCCCCCcccccccCCCCCCEEECCCC-CCCCCCCccccCCCCCCEEeCCCCCCCCCcCCchhhhcccCCcE
Q 004747          106 SFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYN-KFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEK  184 (732)
Q Consensus       106 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~~L~~  184 (732)
                      ...+.++.+++.+. ..|..+..+++|++|++++| .++.+.+.+|.++++|++|++++| .+....+..+..+ ++|++
T Consensus         8 ~~~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N-~l~~i~~~~f~~l-~~L~~   84 (156)
T d2ifga3           8 HGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFT-PRLSR   84 (156)
T ss_dssp             SSSSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSC-SCCCE
T ss_pred             CCCCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeecc-ccCCccccccccc-ccccc
Confidence            33455666666655 34555666666666666544 366555555666666666666665 3333334444444 45555


Q ss_pred             EEeeCcccc
Q 004747          185 LDFSFNSFC  193 (732)
Q Consensus       185 L~Ls~n~l~  193 (732)
                      |+|++|+++
T Consensus        85 L~Ls~N~l~   93 (156)
T d2ifga3          85 LNLSFNALE   93 (156)
T ss_dssp             EECCSSCCS
T ss_pred             eeccCCCCc
Confidence            555555554

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.07  E-value=1.6e-07  Score=84.12  Aligned_cols=83  Identities=20%  Similarity=0.203  Sum_probs=52.5

Q ss_pred             ccCCCCCcEEEcccCceeeec--cccCCCCCCCCEEEccCCcccccchhhhhcCCCCCEEEcccCCCccccc-------h
Q 004747          416 LDALDSLKILDISNNQISGEI--PLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLP-------N  486 (732)
Q Consensus       416 ~~~l~~L~~L~L~~n~l~~~~--p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p-------~  486 (732)
                      +..++.|++|+|++|+++..-  +..+..+++|+.|++++|.++...+..+....+|+.|++++|++.....       .
T Consensus        61 ~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~  140 (162)
T d1koha1          61 EENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISA  140 (162)
T ss_dssp             HHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHH
T ss_pred             HHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHH
Confidence            345667777777777776432  2345567777777777777775444344445567777788887765433       2


Q ss_pred             hhhcCCCCCEEE
Q 004747          487 WLFSFQAIQMMD  498 (732)
Q Consensus       487 ~~~~~~~L~~L~  498 (732)
                      .+..+++|+.||
T Consensus       141 i~~~~P~L~~LD  152 (162)
T d1koha1         141 IRERFPKLLRLD  152 (162)
T ss_dssp             HHTTSTTCCEET
T ss_pred             HHHHCCCCCEEC
Confidence            245677787775

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.01  E-value=1.7e-07  Score=83.96  Aligned_cols=80  Identities=25%  Similarity=0.289  Sum_probs=44.4

Q ss_pred             CcCcceeeccccccccc--CcccccCCCCCcEEEcccCceeeeccccCCCCCCCCEEEccCCcccccch-------hhhh
Q 004747          395 CFQLLALIVNNNNLSGE--IQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLN-------DAIT  465 (732)
Q Consensus       395 ~~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~-------~~~~  465 (732)
                      +++|++|++++|+++..  ++..+..+++|+.|++++|.++...+..+.....|+.+++++|.+.....       ..+.
T Consensus        64 ~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~  143 (162)
T d1koha1          64 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRE  143 (162)
T ss_dssp             CTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHHT
T ss_pred             CCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHHH
Confidence            34444444444444432  12334556777777777777764333223334467777777777764432       2245


Q ss_pred             cCCCCCEEE
Q 004747          466 KWTNLKYFS  474 (732)
Q Consensus       466 ~l~~L~~L~  474 (732)
                      .+|+|+.||
T Consensus       144 ~~P~L~~LD  152 (162)
T d1koha1         144 RFPKLLRLD  152 (162)
T ss_dssp             TSTTCCEET
T ss_pred             HCCCCCEEC
Confidence            678888775

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.51  E-value=3.9e-05  Score=68.36  Aligned_cols=38  Identities=16%  Similarity=0.184  Sum_probs=17.5

Q ss_pred             CCCCcEEEcccCceeee----ccccCCCCCCCCEEEccCCcc
Q 004747          419 LDSLKILDISNNQISGE----IPLTLAGLKSLEIVDFSSNNL  456 (732)
Q Consensus       419 l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l  456 (732)
                      .+.|+.|++++|.+++.    +-..+...++|++|++++|.+
T Consensus        71 n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~  112 (167)
T d1pgva_          71 SPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQ  112 (167)
T ss_dssp             CSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSS
T ss_pred             cccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcC
Confidence            34455555555554432    112334445555555555543

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.40  E-value=5.7e-05  Score=67.22  Aligned_cols=90  Identities=13%  Similarity=0.080  Sum_probs=65.8

Q ss_pred             cccCCCCCcEEEcccCceeeecc----ccCCCCCCCCEEEccCCcccccc----hhhhhcCCCCCEEEcccCCCccc---
Q 004747          415 ELDALDSLKILDISNNQISGEIP----LTLAGLKSLEIVDFSSNNLSGSL----NDAITKWTNLKYFSIARNKLSGN---  483 (732)
Q Consensus       415 ~~~~l~~L~~L~L~~n~l~~~~p----~~~~~l~~L~~L~Ls~N~l~~~~----~~~~~~l~~L~~L~L~~N~l~~~---  483 (732)
                      .+...+.|+.|++++|.+.....    ..+...+.|++|++++|.+++..    ...+...++|++|++++|.+...   
T Consensus        39 ~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~  118 (167)
T d1pgva_          39 AACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQ  118 (167)
T ss_dssp             HHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHH
T ss_pred             HHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHH
Confidence            45667789999999998874322    33455688999999999998543    23456678899999999865421   


Q ss_pred             ----cchhhhcCCCCCEEEccCCcC
Q 004747          484 ----LPNWLFSFQAIQMMDFSTNKF  504 (732)
Q Consensus       484 ----~p~~~~~~~~L~~L~ls~N~l  504 (732)
                          +...+...++|+.|+++.+..
T Consensus       119 ~~~~l~~~L~~n~sL~~l~l~~~~~  143 (167)
T d1pgva_         119 VEMDMMMAIEENESLLRVGISFASM  143 (167)
T ss_dssp             HHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHHHHHHhCCCccEeeCcCCCc
Confidence                345666789999999977653

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.70  E-value=0.00031  Score=62.23  Aligned_cols=15  Identities=13%  Similarity=0.180  Sum_probs=6.7

Q ss_pred             CCCCCCEEEccCCcC
Q 004747          370 NLTYLQVIDLSHNML  384 (732)
Q Consensus       370 ~l~~L~~L~Ls~n~l  384 (732)
                      ..++|++|++++|.+
T Consensus        44 ~n~~L~~L~Ls~n~l   58 (166)
T d1io0a_          44 TNTYVKKFSIVGTRS   58 (166)
T ss_dssp             TCCSCCEEECTTSCC
T ss_pred             cCCccCeeeccCCcc
Confidence            344444444444443

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.55  E-value=0.00056  Score=60.45  Aligned_cols=89  Identities=19%  Similarity=0.199  Sum_probs=53.0

Q ss_pred             ccCCCCCcEEEcccCceeeec----cccCCCCCCCCEEEccCCcccccc----hhhhhcCCCCCEEEc--ccCCCcc---
Q 004747          416 LDALDSLKILDISNNQISGEI----PLTLAGLKSLEIVDFSSNNLSGSL----NDAITKWTNLKYFSI--ARNKLSG---  482 (732)
Q Consensus       416 ~~~l~~L~~L~L~~n~l~~~~----p~~~~~l~~L~~L~Ls~N~l~~~~----~~~~~~l~~L~~L~L--~~N~l~~---  482 (732)
                      +...++|++|++++|.++...    ...+...++++.+++++|.+.+..    ...+...++|+.++|  ++|++..   
T Consensus        42 l~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~  121 (166)
T d1io0a_          42 LKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVE  121 (166)
T ss_dssp             HTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHH
T ss_pred             HhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHH
Confidence            445666777777777665332    123345567777777777765322    234455677776555  4555542   


Q ss_pred             -ccchhhhcCCCCCEEEccCCcC
Q 004747          483 -NLPNWLFSFQAIQMMDFSTNKF  504 (732)
Q Consensus       483 -~~p~~~~~~~~L~~L~ls~N~l  504 (732)
                       .+...+...++|+.|+++.+..
T Consensus       122 ~~La~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_         122 MEIANMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             HHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHHHHhCCCcCEEeCcCCCC
Confidence             2345566777888888776543