Citrus Sinensis ID: 004761
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 732 | 2.2.26 [Sep-21-2011] | |||||||
| Q8GWV5 | 760 | U-box domain-containing p | yes | no | 0.998 | 0.961 | 0.570 | 0.0 | |
| O22193 | 826 | U-box domain-containing p | no | no | 0.983 | 0.871 | 0.448 | 1e-173 | |
| Q5XEZ8 | 707 | U-box domain-containing p | no | no | 0.933 | 0.966 | 0.440 | 1e-158 | |
| Q9SNC6 | 660 | U-box domain-containing p | no | no | 0.372 | 0.413 | 0.485 | 5e-62 | |
| Q8VZ40 | 632 | U-box domain-containing p | no | no | 0.381 | 0.441 | 0.508 | 2e-61 | |
| Q5VRH9 | 611 | U-box domain-containing p | no | no | 0.378 | 0.453 | 0.482 | 2e-61 | |
| Q0IMG9 | 694 | E3 ubiquitin-protein liga | no | no | 0.372 | 0.393 | 0.503 | 1e-59 | |
| A2ZLU6 | 694 | Protein spotted leaf 11 O | N/A | no | 0.372 | 0.393 | 0.503 | 1e-59 | |
| Q8GUG9 | 612 | U-box domain-containing p | no | no | 0.374 | 0.447 | 0.456 | 2e-59 | |
| Q9ZV31 | 654 | U-box domain-containing p | no | no | 0.385 | 0.431 | 0.447 | 4e-57 |
| >sp|Q8GWV5|PUB3_ARATH U-box domain-containing protein 3 OS=Arabidopsis thaliana GN=PUB3 PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 763 bits (1969), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 434/761 (57%), Positives = 545/761 (71%), Gaps = 30/761 (3%)
Query: 1 MDETSERCLINSISRFIHLVSCQTIKLKPIQKDYKTMAGALKLLKPLLDEVVDYKIPLDE 60
MD RCL+NSISR++HLV+CQTI+ PIQ M LKLLKPLLDEVVD KIP D+
Sbjct: 1 MDPVPVRCLLNSISRYLHLVACQTIRFNPIQTCIGNMVLLLKLLKPLLDEVVDCKIPSDD 60
Query: 61 VLNKECEELDMVVNEAREFMENWSPKMSKIFSVLHSEPLMMKIQSSSLEICHILYRLLQS 120
L K CE+LD VVN+AREF+E+WSPK+SK+F V E L+ K+Q+ SLEI IL +L QS
Sbjct: 61 CLYKGCEDLDSVVNQAREFLEDWSPKLSKLFGVFQCEVLLGKVQTCSLEISRILLQLSQS 120
Query: 121 SPSNSSMSAVQHCMQEIHCLKQE-RIMEHITKAMRGLQDD-TIRCTDHLVKIIESLGLTS 178
SP SS+ +V+ C+QE KQE +ME + A+R +DD T +HL II+ LGL S
Sbjct: 121 SPVTSSVQSVERCVQETESFKQEGTLMELMENALRNQKDDITSLDNNHLESIIQMLGLIS 180
Query: 179 NQELLKESLAVEMERIRAERNQNKGHSDQMNYIVDLISHIRDCMLKIERFEATSGVPIPP 238
NQ+LLKES+ VE ERIR++ ++++ +Q +++L+ IR+ MLK E E G+ IPP
Sbjct: 181 NQDLLKESITVEKERIRSQASKSEEDMEQTEQLIELVLCIREHMLKTEFLEVAKGISIPP 240
Query: 239 YFRCPLSLELMIDPVIVASGQTYERVFIQKWLDHGLNICPKTRQTLAHTNLIPNYTVKAM 298
YFRCPLS ELM+DPVIVASGQT++R I+KWLD+GL +CP+TRQ L H LIPNYTVKAM
Sbjct: 241 YFRCPLSTELMLDPVIVASGQTFDRTSIKKWLDNGLAVCPRTRQVLTHQELIPNYTVKAM 300
Query: 299 IENWCEENNLRLPSYSVHSNIVSVLSPL-DHVSAQDLIRTDSFRSLRGSNSTSRSSV-DV 356
I +W E N + L + S H S + +++ +QD RT+SFR S+S + S +
Sbjct: 301 IASWLEANRINLATNSCHQYDGGDASSMANNMGSQDFNRTESFRFSLRSSSLTSRSSLET 360
Query: 357 GNGFQKLKIDVSSRLTEKSNHR--------SPEQSYIHSRSESASSAISSVEYMLPASKE 408
GNGF+KLKI+VS+ L +S + SP QSY HSRSES S +SSV+Y+ + E
Sbjct: 361 GNGFEKLKINVSASLCGESQSKDLEIFELLSPGQSYTHSRSESVCSVVSSVDYVPSVTHE 420
Query: 409 LSRRCSKNEKSSELS----------------GEIISECPAASPSRSDEVTTTPYVKKLIE 452
++ SSE+S EC S +TT+ +K L+E
Sbjct: 421 TESILGNHQSSSEMSPKKNLESSNNVNHEHSAAKTYECSVHDLDDSGTMTTSHTIK-LVE 479
Query: 453 DLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALL 512
DL S SN+++ +AAAE+R L +++ENR+ IG CGAI PLLSLLYSE +LTQEHAVTALL
Sbjct: 480 DLKSGSNKVKTAAAAEIRHLTINSIENRVHIGRCGAITPLLSLLYSEEKLTQEHAVTALL 539
Query: 513 NLSINDENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRS-GAV 571
NLSI++ NKAMI E GAIEPL+HVL +GN AKENSAA+LFSLSVL+ + +IG+S A+
Sbjct: 540 NLSISELNKAMIVEVGAIEPLVHVLNTGNDRAKENSAASLFSLSVLQVNRERIGQSNAAI 599
Query: 572 KALVDLLGSGTLRGRKDAATALFNLSIFHENKARIIQAGAVKHLVDLMDPSTGMVDKAVA 631
+ALV+LLG GT RG+KDAA+ALFNLSI H+NKARI+QA AVK+LV+L+DP MVDKAVA
Sbjct: 600 QALVNLLGKGTFRGKKDAASALFNLSITHDNKARIVQAKAVKYLVELLDPDLEMVDKAVA 659
Query: 632 LLANLSTVGEGRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCLHSPKFCTLVLQE 691
LLANLS VGEGR AI REGGIP LVE V+ GSQRGKENAAS+LLQLCL+SPKFCTLVLQE
Sbjct: 660 LLANLSAVGEGRQAIVREGGIPLLVETVDLGSQRGKENAASVLLQLCLNSPKFCTLVLQE 719
Query: 692 GAVPPLVGLSQSGTPRAKEKAQQLLSHFRNQREGSTGKKKS 732
GA+PPLV LSQSGT RAKEKAQQLLSHFRNQR+ K +S
Sbjct: 720 GAIPPLVALSQSGTQRAKEKAQQLLSHFRNQRDARMKKGRS 760
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Functions as an E3 ubiquitin ligase. Arabidopsis thaliana (taxid: 3702) EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: - |
| >sp|O22193|PUB4_ARATH U-box domain-containing protein 4 OS=Arabidopsis thaliana GN=PUB4 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 608 bits (1567), Expect = e-173, Method: Compositional matrix adjust.
Identities = 370/825 (44%), Positives = 493/825 (59%), Gaps = 105/825 (12%)
Query: 8 CLINSISRFIHLVSCQTIKLKPIQKDYKTMAGALKLLKPLLDEVVDYKIPLDEVLNKECE 67
L+ SIS F++L S + I L P +K YK + L++LKP+ D VV DE L K E
Sbjct: 3 VLLRSISSFLNLSSSKHIDLDPFEKYYKRVEELLRVLKPIADVVVTSDFVFDEKLGKAFE 62
Query: 68 ELDMVVNEAREFMENWSPKMSKIFSVLHSEPLMMKIQSSSLEICHILYRLLQSSPSNSSM 127
EL V+++ + +W SK++ VL E L+ K++ + ++ L P S
Sbjct: 63 ELTQDVDQSIDLFRSWQAFSSKVYFVLQIESLLPKMRDTIVDTFQFLMSSKNHLPDELSP 122
Query: 128 SAVQHCMQEIHCLKQERIMEHITKAMRGLQDDTIRCTDHLVKIIESLGLTSNQELLKESL 187
++++ C+++I L E I I A+R +D + LVKI E+ GL SNQE+L E++
Sbjct: 123 ASLEQCLEKIKHLSYEEISSVIDGALRDQRDGVGPSPEILVKIGENTGLRSNQEILIEAV 182
Query: 188 AVEMERIRAERNQNKGHSDQMNYIVDLISHIRDCMLKIERFEATSGVPIPPYFRCPLSLE 247
A+E ++ AE+++N + ++ ++ +++ + + +L I++ + TS V I F CPLSLE
Sbjct: 183 ALERQKEMAEQSENNAEVEFLDQLIVIVNRMHERLLLIKQTQ-TSSVAILADFFCPLSLE 241
Query: 248 LMIDPVIVASGQTYERVFIQKWLDHGLNICPKTRQTLAHTNLIPNYTVKAMIENWCEENN 307
+M DPVIV+SGQTYE+ FI++W+D GL +CPKTRQTL HT LIPNYTVKA+I NWCE N+
Sbjct: 242 VMTDPVIVSSGQTYEKAFIKRWIDLGLKVCPKTRQTLTHTTLIPNYTVKALIANWCETND 301
Query: 308 LRLPSYSVHSNIVSVLSPL-----------DHVSAQ---------DLIRTDSFRSLRGSN 347
++LP + S ++ LSPL VSA+ D +++ + S
Sbjct: 302 VKLPDPN-KSTSLNELSPLLSCTDSIPSTGADVSARKVSNKSHDWDASSSETGKPSFSSR 360
Query: 348 STSRSSVD---------------VGNGF-------------------QKLKIDVSSRLTE 373
+T R GNG+ ++L+ D R +
Sbjct: 361 ATEREGASPSRPASALGASSPGISGNGYGLDARRGSLNDFEDRSNDSRELRTDAPGRSSV 420
Query: 374 KSNHR-SPEQSYI----HSRSESASSAISSVEYMLPASKELSRRCS-KNEKSSELSGEII 427
S R S E H RS SA+S +S+ E+ + E S + SS+ SGEI
Sbjct: 421 SSTTRGSVENGQTSENHHHRSPSATSTVSNEEFPRADANENSEESAHATPYSSDASGEIR 480
Query: 428 SECPAA-------------SPSRSDEVTTTPYVKKLIEDLNS-----TSNE--------- 460
S AA SP D T + ++ E L S SNE
Sbjct: 481 SGPLAATTSAATRRDLSDFSPKFMDRRTRGQFWRRPSERLGSRIVSAPSNETRRDLSEVE 540
Query: 461 ----------------IQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQ 504
Q A AELRLLAKHNM+NR++IGN GAI L+ LLYS TQ
Sbjct: 541 TQVKKLVEELKSSSLDTQRQATAELRLLAKHNMDNRIVIGNSGAIVLLVELLYSTDSATQ 600
Query: 505 EHAVTALLNLSINDENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAK 564
E+AVTALLNLSIND NK IA+AGAIEPLIHVL++G+ AKENSAA LFSLSV+EE K K
Sbjct: 601 ENAVTALLNLSINDNNKKAIADAGAIEPLIHVLENGSSEAKENSAATLFSLSVIEENKIK 660
Query: 565 IGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFHENKARIIQAGAVKHLVDLMDPSTG 624
IG+SGA+ LVDLLG+GT RG+KDAATALFNLSI ENKA I+Q+GAV++L+DLMDP+ G
Sbjct: 661 IGQSGAIGPLVDLLGNGTPRGKKDAATALFNLSIHQENKAMIVQSGAVRYLIDLMDPAAG 720
Query: 625 MVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCLHSPKF 684
MVDKAVA+LANL+T+ EGR AI +EGGIP LVEVVE GS RGKENAA+ LLQL +S +F
Sbjct: 721 MVDKAVAVLANLATIPEGRNAIGQEGGIPLLVEVVELGSARGKENAAAALLQLSTNSGRF 780
Query: 685 CTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFRNQREGSTGK 729
C +VLQEGAVPPLV LSQSGTPRA+EKAQ LLS+FRNQR G+ G+
Sbjct: 781 CNMVLQEGAVPPLVALSQSGTPRAREKAQALLSYFRNQRHGNAGR 825
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Functions as an E3 ubiquitin ligase. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
| >sp|Q5XEZ8|PUB2_ARATH U-box domain-containing protein 2 OS=Arabidopsis thaliana GN=PUB2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 557 bits (1436), Expect = e-158, Method: Compositional matrix adjust.
Identities = 323/733 (44%), Positives = 444/733 (60%), Gaps = 50/733 (6%)
Query: 7 RCLINSISRFIHLVSCQTIKLKPIQKDYKTMAGALKLLKPLLDEVVDYKIPLDEVLNKEC 66
R L+++IS ++ L S + P K Y KL+KP+L+ ++D E+LN
Sbjct: 11 RVLLDNISSYLSLSSMDDLSSNPAHKYYTRGEDIGKLIKPVLENLIDSDAAPSELLNNGF 70
Query: 67 EELDMVVNEAREFMENWSPKMSKIFSVLHSEPLMMKIQSSSLEICHILYRLLQSSPSNSS 126
EEL V+E RE ++W P ++IF VL E L K++ SSLE+ +L Q P++
Sbjct: 71 EELAQYVDELREQFQSWQPLSTRIFYVLRIESLASKLRESSLEVFQLLKHCEQHLPADLI 130
Query: 127 MSAVQHCMQEIHCLKQERIMEHITKAMRGLQDDTIRCTDHLVKIIESLGLTSNQELLKES 186
+ + C++ + + ++ I I +A++ + ++ LVKI ES GL SNQE+L E
Sbjct: 131 SPSFEECIELVKLVARDEISYTIDQALKDQKKGVGPTSEVLVKIAESTGLRSNQEILVEG 190
Query: 187 LAVEMERIRAERNQNKGHSDQMNYIVDLISHIRDCMLKIERFEATSGVPIPPYFRCPLSL 246
+ + + AE N ++ ++ ++ L + + + + I++ + V +P FRC LSL
Sbjct: 191 VVLTNMKEDAELTDNDTEAEYLDGLISLTTQMHEYLSDIKQAQLRCPVRVPSDFRCSLSL 250
Query: 247 ELMIDPVIVASGQTYERVFIQKWLDHGLNICPKTRQTLAHTNLIPNYTVKAMIENWCEEN 306
ELM DPVIVASGQT+ERVFIQKW+D GL +CPKTRQ L+HT L PN+ V+A + +WCE N
Sbjct: 251 ELMTDPVIVASGQTFERVFIQKWIDMGLMVCPKTRQALSHTTLTPNFIVRAFLASWCETN 310
Query: 307 NLRLPSYSVHSNIVSVLSPLD--HVSAQDLIRTDSFRSLRGSNSTSRSSVDVGNGFQKLK 364
N+ P PL+ H S + +S R+ N S S
Sbjct: 311 NVYPPD------------PLELIHSSEPFPLLVESVRASSSENGHSES------------ 346
Query: 365 IDVSSRLTEKSNHRSPEQSYIHSRSESASSAISSV------EYMLPASKELSRRCSKNEK 418
+D + E + SRS SA +S V A + L+R + +
Sbjct: 347 LD------------AEELRQVFSRSASAPGIVSEVVCKTKRNNNAAADRSLTRSNTPWKF 394
Query: 419 SSELSGEIISECPAASPSRSDEVTTTPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNME 478
E PA + VKKLI+DL S+S + Q A A +R+LA+++ +
Sbjct: 395 PEERHWRHPGIIPATVRETGSSSSIETEVKKLIDDLKSSSLDTQREATARIRILARNSTD 454
Query: 479 NRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAMIAEAGAIEPLIHVLK 538
NR++I C AIP L+SLLYS + Q AVT LLNLSIND NK++IAE+GAI PLIHVLK
Sbjct: 455 NRIVIARCEAIPSLVSLLYSTDERIQADAVTCLLNLSINDNNKSLIAESGAIVPLIHVLK 514
Query: 539 SGN-GGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLS 597
+G AK NSAA LFSLSV+EEYK +IG +GA++ LVDLLGSG+L G+KDAATALFNLS
Sbjct: 515 TGYLEEAKANSAATLFSLSVIEEYKTEIGEAGAIEPLVDLLGSGSLSGKKDAATALFNLS 574
Query: 598 IFHENKARIIQAGAVKHLVDLMDPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVE 657
I HENK ++I+AGAV++LV+LMDP+ GMV+KAV +LANL+TV EG++AI EGGIP LVE
Sbjct: 575 IHHENKTKVIEAGAVRYLVELMDPAFGMVEKAVVVLANLATVREGKIAIGEEGGIPVLVE 634
Query: 658 VVESGSQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLS 717
VVE GS RGKENA + LLQLC HSPKFC V++EG +PPLV L++SGT R KEKAQ LL
Sbjct: 635 VVELGSARGKENATAALLQLCTHSPKFCNNVIREGVIPPLVALTKSGTARGKEKAQNLLK 694
Query: 718 HFR-----NQREG 725
+F+ NQR G
Sbjct: 695 YFKAHRQSNQRRG 707
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Functions as an E3 ubiquitin ligase. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
| >sp|Q9SNC6|PUB13_ARATH U-box domain-containing protein 13 OS=Arabidopsis thaliana GN=PUB13 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 239 bits (610), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 133/274 (48%), Positives = 178/274 (64%), Gaps = 1/274 (0%)
Query: 447 VKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEH 506
++ L+ L + E Q SAA E+RLLAK N +NR+ I GAIP L+ LL + QEH
Sbjct: 354 IEDLMWRLAYGNPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRIQEH 413
Query: 507 AVTALLNLSINDENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIG 566
+VTALLNLSI + NK I AGAI ++ VLK G+ A+EN+AA LFSLSV++E K IG
Sbjct: 414 SVTALLNLSICENNKGAIVSAGAIPGIVQVLKKGSMEARENAAATLFSLSVIDENKVTIG 473
Query: 567 RSGAVKALVDLLGSGTLRGRKDAATALFNLSIFHENKARIIQAGAVKHLVDLM-DPSTGM 625
GA+ LV LL GT RG+KDAATALFNL I+ NK + I+AG + L L+ +P +GM
Sbjct: 474 ALGAIPPLVVLLNEGTQRGKKDAATALFNLCIYQGNKGKAIRAGVIPTLTRLLTEPGSGM 533
Query: 626 VDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCLHSPKFC 685
VD+A+A+LA LS+ EG+ I +PSLVE + +GS R +ENAA++L+ LC P+
Sbjct: 534 VDEALAILAILSSHPEGKAIIGSSDAVPSLVEFIRTGSPRNRENAAAVLVHLCSGDPQHL 593
Query: 686 TLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHF 719
+ G + PL+ L+ +GT R K KA QLL
Sbjct: 594 VEAQKLGLMGPLIDLAGNGTDRGKRKAAQLLERI 627
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Functions as an E3 ubiquitin ligase. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
| >sp|Q8VZ40|PUB14_ARATH U-box domain-containing protein 14 OS=Arabidopsis thaliana GN=PUB14 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 238 bits (606), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 143/281 (50%), Positives = 192/281 (68%), Gaps = 2/281 (0%)
Query: 446 YVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQE 505
+V L+E L + + E Q +AA ELRLLAK N++NR+ I GAIP L+ LL S TQE
Sbjct: 346 FVLSLLEKLANGTTEQQRAAAGELRLLAKRNVDNRVCIAEAGAIPLLVELLSSPDPRTQE 405
Query: 506 HAVTALLNLSINDENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKI 565
H+VTALLNLSIN+ NK I +AGAI ++ VLK+G+ A+EN+AA LFSLSV++E K I
Sbjct: 406 HSVTALLNLSINEGNKGAIVDAGAITDIVEVLKNGSMEARENAAATLFSLSVIDENKVAI 465
Query: 566 GRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFHENKARIIQAGAVKHLVDLM-DPSTG 624
G +GA++AL+ LL GT RG+KDAATA+FNL I+ NK+R ++ G V L L+ D G
Sbjct: 466 GAAGAIQALISLLEEGTRRGKKDAATAIFNLCIYQGNKSRAVKGGIVDPLTRLLKDAGGG 525
Query: 625 MVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCLHSPKF 684
MVD+A+A+LA LST EG+ AIA IP LVE++ +GS R +ENAA+IL LC+ + +
Sbjct: 526 MVDEALAILAILSTNQEGKTAIAEAESIPVLVEIIRTGSPRNRENAAAILWYLCIGNIER 585
Query: 685 CTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFRNQREG 725
+ + GA L L+++GT RAK KA LL + Q EG
Sbjct: 586 LNVAREVGADVALKELTENGTDRAKRKAASLLELIQ-QTEG 625
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Functions as an E3 ubiquitin ligase with specific E2 ubiquitin-conjugating enzymes. Undergoes auto-ubiquitination. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
| >sp|Q5VRH9|PUB12_ORYSJ U-box domain-containing protein 12 OS=Oryza sativa subsp. japonica GN=PUB12 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 237 bits (605), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 134/278 (48%), Positives = 186/278 (66%), Gaps = 1/278 (0%)
Query: 450 LIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVT 509
L+ L S + + Q +AA E+RLLAK N+ NR+ I GAIP L++LL S TQEHAVT
Sbjct: 328 LMNRLRSGNQDEQRAAAGEIRLLAKRNVNNRICIAEAGAIPLLVNLLSSSDPRTQEHAVT 387
Query: 510 ALLNLSINDENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRSG 569
ALLNLSI++ NKA I ++ AI ++ VLK+G+ +EN+AA LFSLSV++E K IG +G
Sbjct: 388 ALLNLSIHENNKASIVDSHAIPKIVEVLKTGSMETRENAAATLFSLSVVDENKVTIGAAG 447
Query: 570 AVKALVDLLGSGTLRGRKDAATALFNLSIFHENKARIIQAGAVKHLVD-LMDPSTGMVDK 628
A+ L++LL G+ RG+KDAATA+FNL I+ NK R ++AG V HL++ L+DP+ GM+D+
Sbjct: 448 AIPPLINLLCDGSPRGKKDAATAIFNLCIYQGNKVRAVKAGIVIHLMNFLVDPTGGMIDE 507
Query: 629 AVALLANLSTVGEGRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCLHSPKFCTLV 688
A++LL+ L+ EG++ IAR IP LVEV+++GS R +ENAA+IL LC +
Sbjct: 508 ALSLLSILAGNPEGKIVIARSEPIPPLVEVIKTGSPRNRENAAAILWLLCSADTEQTLAA 567
Query: 689 LQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFRNQREGS 726
G L LS++GT RAK KA +L E S
Sbjct: 568 KAAGVEDALKELSETGTDRAKRKASSILELMHQANEDS 605
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Possesses E3 ubiquitin-protein ligase in vitro. Oryza sativa subsp. japonica (taxid: 39947) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
| >sp|Q0IMG9|SL11_ORYSJ E3 ubiquitin-protein ligase SPL11 OS=Oryza sativa subsp. japonica GN=SPL11 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 231 bits (589), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 139/276 (50%), Positives = 185/276 (67%), Gaps = 3/276 (1%)
Query: 447 VKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEH 506
+ L+ L S E Q SAAAELRLLAK N NR+ I GAIP LLSLL S TQEH
Sbjct: 369 IDALLSKLCSPDTEEQRSAAAELRLLAKRNANNRICIAEAGAIPLLLSLLSSSDLRTQEH 428
Query: 507 AVTALLNLSINDENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIG 566
AVTALLNLSI+++NKA I +GA+ ++HVLK+G+ A+EN+AA LFSLSV++EYK IG
Sbjct: 429 AVTALLNLSIHEDNKASIISSGAVPSIVHVLKNGSMEARENAAATLFSLSVIDEYKVTIG 488
Query: 567 RSGAVKALVDLLGSGTLRGRKDAATALFNLSIFHENKARIIQAGAVKHLVDLM-DPSTGM 625
GA+ ALV LLG G+ RG+KDAA ALFNL I+ NK R I+AG V ++ L+ +P+ +
Sbjct: 489 GMGAIPALVVLLGEGSQRGKKDAAAALFNLCIYQGNKGRAIRAGLVPLIMGLVTNPTGAL 548
Query: 626 VDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCLHSPKFC 685
+D+A+A+L+ LS+ EG+ AI +P LVE++ SG+ R +ENAA+++L LC
Sbjct: 549 MDEAMAILSILSSHPEGKAAIGAAEPVPVLVEMIGSGTPRNRENAAAVMLHLCSGEHHLV 608
Query: 686 TLVLQE--GAVPPLVGLSQSGTPRAKEKAQQLLSHF 719
L + G + PL L+ +GT R K KA QLL
Sbjct: 609 HLARAQECGIMVPLRELALNGTDRGKRKAVQLLERM 644
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E3 ubiquitin-protein ligase that negatively regulates programmed cell death and disease resistance. Participates in flowering time control by mediating ubiquitination and subsequent proteasomal degradation of SPIN1. Oryza sativa subsp. japonica (taxid: 39947) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
| >sp|A2ZLU6|SL11_ORYSI Protein spotted leaf 11 OS=Oryza sativa subsp. indica GN=SPL11 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 231 bits (589), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 139/276 (50%), Positives = 185/276 (67%), Gaps = 3/276 (1%)
Query: 447 VKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEH 506
+ L+ L S E Q SAAAELRLLAK N NR+ I GAIP LLSLL S TQEH
Sbjct: 369 IDALLSKLCSPDTEEQRSAAAELRLLAKRNANNRICIAEAGAIPLLLSLLSSSDLRTQEH 428
Query: 507 AVTALLNLSINDENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIG 566
AVTALLNLSI+++NKA I +GA+ ++HVLK+G+ A+EN+AA LFSLSV++EYK IG
Sbjct: 429 AVTALLNLSIHEDNKASIISSGAVPSIVHVLKNGSMEARENAAATLFSLSVIDEYKVTIG 488
Query: 567 RSGAVKALVDLLGSGTLRGRKDAATALFNLSIFHENKARIIQAGAVKHLVDLM-DPSTGM 625
GA+ ALV LLG G+ RG+KDAA ALFNL I+ NK R I+AG V ++ L+ +P+ +
Sbjct: 489 GMGAIPALVVLLGEGSQRGKKDAAAALFNLCIYQGNKGRAIRAGLVPLIMGLVTNPTGAL 548
Query: 626 VDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCLHSPKFC 685
+D+A+A+L+ LS+ EG+ AI +P LVE++ SG+ R +ENAA+++L LC
Sbjct: 549 MDEAMAILSILSSHPEGKAAIGAAEPVPVLVEMIGSGTPRNRENAAAVMLHLCSGEHHLV 608
Query: 686 TLVLQE--GAVPPLVGLSQSGTPRAKEKAQQLLSHF 719
L + G + PL L+ +GT R K KA QLL
Sbjct: 609 HLARAQECGIMVPLRELALNGTDRGKRKAVQLLERM 644
|
Defense related protein that negatively regulates programmed cell death. In vitro, possesses E3 ubiquitin ligase activity. Oryza sativa subsp. indica (taxid: 39946) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
| >sp|Q8GUG9|PUB11_ARATH U-box domain-containing protein 11 OS=Arabidopsis thaliana GN=PUB11 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 231 bits (588), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 126/276 (45%), Positives = 187/276 (67%), Gaps = 2/276 (0%)
Query: 447 VKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEH 506
++ L++ L+S S E + +A +E+R L+K + +NR++I GAIP L++LL SE TQE+
Sbjct: 333 IRALVQRLSSRSTEDRRNAVSEIRSLSKRSTDNRILIAEAGAIPVLVNLLTSEDVATQEN 392
Query: 507 AVTALLNLSINDENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIG 566
A+T +LNLSI + NK +I AGA+ ++ VL++G A+EN+AA LFSLS+ +E K IG
Sbjct: 393 AITCVLNLSIYENNKELIMFAGAVTSIVQVLRAGTMEARENAAATLFSLSLADENKIIIG 452
Query: 567 RSGAVKALVDLLGSGTLRGRKDAATALFNLSIFHENKARIIQAGAVKHLVDLMDPST--G 624
SGA+ ALVDLL +GT RG+KDAATALFNL I+H NK R ++AG V LV ++ ST
Sbjct: 453 GSGAIPALVDLLENGTPRGKKDAATALFNLCIYHGNKGRAVRAGIVTALVKMLSDSTRHR 512
Query: 625 MVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCLHSPKF 684
MVD+A+ +L+ L+ + + AI + +P+L+ ++++ R +ENAA+ILL LC +
Sbjct: 513 MVDEALTILSVLANNQDAKSAIVKANTLPALIGILQTDQTRNRENAAAILLSLCKRDTEK 572
Query: 685 CTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFR 720
+ + GAV PL+ LS++GT R K KA LL R
Sbjct: 573 LITIGRLGAVVPLMDLSKNGTERGKRKAISLLELLR 608
|
Functions as an E3 ubiquitin ligase. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
| >sp|Q9ZV31|PUB12_ARATH U-box domain-containing protein 12 OS=Arabidopsis thaliana GN=PUB12 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 223 bits (568), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 129/288 (44%), Positives = 190/288 (65%), Gaps = 6/288 (2%)
Query: 447 VKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLL-YSEAQLTQE 505
+++L+ L S E + SAA E+RLLAK N NR+ I GAIP L++LL S TQE
Sbjct: 357 IEELLLKLTSQQPEDRRSAAGEIRLLAKQNNHNRVAIAASGAIPLLVNLLTISNDSRTQE 416
Query: 506 HAVTALLNLSINDENKAMIA-EAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAK 564
HAVT++LNLSI ENK I +GA+ ++HVL+ G+ A+EN+AA LFSLSV++E K
Sbjct: 417 HAVTSILNLSICQENKGKIVYSSGAVPGIVHVLQKGSMEARENAAATLFSLSVIDENKVT 476
Query: 565 IGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFHENKARIIQAGAVKHLVDLM-DPST 623
IG +GA+ LV LL G+ RG+KDAATALFNL IF NK + ++AG V L+ L+ +P +
Sbjct: 477 IGAAGAIPPLVTLLSEGSQRGKKDAATALFNLCIFQGNKGKAVRAGLVPVLMRLLTEPES 536
Query: 624 GMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCLHSPK 683
GMVD+++++LA LS+ +G+ + +P LV+ + SGS R KEN+A++L+ LC + +
Sbjct: 537 GMVDESLSILAILSSHPDGKSEVGAADAVPVLVDFIRSGSPRNKENSAAVLVHLCSWNQQ 596
Query: 684 FCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLL---SHFRNQREGSTG 728
+ G + L+ ++++GT R K KA QLL S F +Q++ +G
Sbjct: 597 HLIEAQKLGIMDLLIEMAENGTDRGKRKAAQLLNRFSRFNDQQKQHSG 644
|
Functions as an E3 ubiquitin ligase. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 732 | ||||||
| 225438111 | 764 | PREDICTED: U-box domain-containing prote | 0.998 | 0.956 | 0.700 | 0.0 | |
| 359480285 | 757 | PREDICTED: U-box domain-containing prote | 1.0 | 0.966 | 0.702 | 0.0 | |
| 224082828 | 748 | predicted protein [Populus trichocarpa] | 0.982 | 0.961 | 0.700 | 0.0 | |
| 224066241 | 753 | predicted protein [Populus trichocarpa] | 0.991 | 0.964 | 0.685 | 0.0 | |
| 255582501 | 753 | ubiquitin-protein ligase, putative [Rici | 0.994 | 0.966 | 0.668 | 0.0 | |
| 356572260 | 775 | PREDICTED: U-box domain-containing prote | 0.995 | 0.940 | 0.632 | 0.0 | |
| 356503616 | 759 | PREDICTED: U-box domain-containing prote | 0.994 | 0.959 | 0.623 | 0.0 | |
| 449462443 | 775 | PREDICTED: U-box domain-containing prote | 0.984 | 0.930 | 0.601 | 0.0 | |
| 297744157 | 615 | unnamed protein product [Vitis vinifera] | 0.838 | 0.998 | 0.628 | 0.0 | |
| 297820234 | 760 | armadillo/beta-catenin repeat family pro | 1.0 | 0.963 | 0.569 | 0.0 |
| >gi|225438111|ref|XP_002277883.1| PREDICTED: U-box domain-containing protein 3-like isoform 1 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1049 bits (2712), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 536/765 (70%), Positives = 615/765 (80%), Gaps = 34/765 (4%)
Query: 1 MDETSERCLINSISRFIHLVSCQTIKLKPIQKDYKTMAGALKLLKPLLDEVVDYKIPLDE 60
MD S RCLINSISRFIHLVSCQT+K PIQKD + M G LKLLKP+LD+VV+ KIP DE
Sbjct: 1 MDTKSVRCLINSISRFIHLVSCQTLKPMPIQKDCRNMVGLLKLLKPVLDDVVNCKIPSDE 60
Query: 61 VLNKECEELDMVVNEAREFMENWSPKMSKIFSVLHSEPLMMKIQSSSLEICHILYRLLQS 120
+L KECEELDM VNEAREF+ENW PKMSKIFSVL SE L+MKIQSSSLEIC IL RLL S
Sbjct: 61 ILFKECEELDMAVNEAREFVENWCPKMSKIFSVLQSEQLVMKIQSSSLEICFILCRLLHS 120
Query: 121 SPSNSSMSAVQHCMQEIHCLKQERIMEHITKAMRGLQDDTIRCTDHLVKIIESLGLTSNQ 180
SPS S+++++QHCMQ++ L+Q+RI E+I +A+R +D+ I T L KIIESL LTS Q
Sbjct: 121 SPSVSNLTSIQHCMQKLQHLEQKRISEYIEQALRSQRDEIIPHTQQLAKIIESLSLTSKQ 180
Query: 181 ELLKESLAVEMERIRAERNQNKGHSDQMNYIVDLISHIRDCMLKIERFEATSGVPIPPYF 240
ELLKES+AVE ER+ A+ N+ DQ+N IV+L+SHIRDCM+++ FEA +GV IP YF
Sbjct: 181 ELLKESVAVERERMNAQVNKTAYELDQINQIVELVSHIRDCMVRLGGFEAINGVRIPSYF 240
Query: 241 RCPLSLELMIDPVIVASGQTYERVFIQKWLDHGLNICPKTRQTLAHTNLIPNYTVKAMIE 300
RCPLSLELM+DPVIVASGQTYER IQKWLD GL ICPKTRQTLAH NLIPNYTVKA+IE
Sbjct: 241 RCPLSLELMMDPVIVASGQTYERSSIQKWLDQGLMICPKTRQTLAHANLIPNYTVKALIE 300
Query: 301 NWCEENNLRLPSYSVHSNIVSVLSPLDHVSAQDLIRTDSFR-SLRGSNSTSRSSVDVGNG 359
NWCEENN+ L S H+NI V SPLDHVSAQD+I DSFR S+ SN TSRSS++VGNG
Sbjct: 301 NWCEENNITLSGTSEHTNITPVPSPLDHVSAQDVIGMDSFRCSIHSSNCTSRSSLEVGNG 360
Query: 360 FQKLKIDVSSRL------------TEKSNHRSPEQSYIHSRSESASSAISSVEYMLPASK 407
+KLK+DVS+R EK +SPEQSYIHSR+ES SSA+SS++ + AS
Sbjct: 361 IEKLKVDVSTRFGGEESNVCKSREPEKLERQSPEQSYIHSRTESTSSAVSSIDSLPTAST 420
Query: 408 ELSRRCSKNEKSSELSGEIISE------------C--------PAASPSRSDEVTTTPYV 447
ELSR +K E + LSGEI S+ C P + P + D++TT+ +V
Sbjct: 421 ELSRISNKQENGTGLSGEITSDSKTKVEMVSNGKCGPPRILSLPFSDP-KFDDLTTSSHV 479
Query: 448 KKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHA 507
+KL+EDL S SNE+Q AA+ELRLLAKHNMENR+IIG CGAI PL+ LLYSE + TQE+A
Sbjct: 480 EKLVEDLKSQSNELQTVAASELRLLAKHNMENRIIIGRCGAIAPLVLLLYSEVKQTQENA 539
Query: 508 VTALLNLSINDENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGR 567
VTALLNLSIND NK +IAEAGAIE LIHVLKSGN GAKENSAA LFSLSVLEEYKAKIG
Sbjct: 540 VTALLNLSINDANKVIIAEAGAIESLIHVLKSGNAGAKENSAATLFSLSVLEEYKAKIGC 599
Query: 568 SGAVKALVDLLGSGTLRGRKDAATALFNLSIFHENKARIIQAGAVKHLVDLMDPSTGMVD 627
SGAVKALVDLLGSGTLRG+KDAATALFNLSI HENK RIIQAGAVK+LV LM+P+TGMVD
Sbjct: 600 SGAVKALVDLLGSGTLRGKKDAATALFNLSICHENKPRIIQAGAVKYLVQLMEPATGMVD 659
Query: 628 KAVALLANLSTVGEGRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCLHSPKFCTL 687
KAVALLANLS + EGR AI REGGIP LVE+VE+GS RGKENAASILLQLC++SPKFCTL
Sbjct: 660 KAVALLANLSIISEGRFAIVREGGIPLLVELVETGSVRGKENAASILLQLCINSPKFCTL 719
Query: 688 VLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFRNQREGSTGKKKS 732
VLQEGA+PPLV LSQSGTPRAKEKAQQLLSHFRNQREG+ K KS
Sbjct: 720 VLQEGAIPPLVALSQSGTPRAKEKAQQLLSHFRNQREGAAAKGKS 764
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359480285|ref|XP_003632427.1| PREDICTED: U-box domain-containing protein 3-like isoform 2 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1042 bits (2694), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 532/757 (70%), Positives = 611/757 (80%), Gaps = 25/757 (3%)
Query: 1 MDETSERCLINSISRFIHLVSCQTIKLKPIQKDYKTMAGALKLLKPLLDEVVDYKIPLDE 60
MD S RCLINSISRFIHLVSCQT+K PIQKD + M G LKLLKP+LD+VV+ KIP DE
Sbjct: 1 MDTKSVRCLINSISRFIHLVSCQTLKPMPIQKDCRNMVGLLKLLKPVLDDVVNCKIPSDE 60
Query: 61 VLNKECEELDMVVNEAREFMENWSPKMSKIFSVLHSEPLMMKIQSSSLEICHILYRLLQS 120
+L KECEELDM VNEAREF+ENW PKMSKIFSVL SE L+MKIQSSSLEIC IL RLL S
Sbjct: 61 ILFKECEELDMAVNEAREFVENWCPKMSKIFSVLQSEQLVMKIQSSSLEICFILCRLLHS 120
Query: 121 SPSNSSMSAVQHCMQEIHCLKQERIMEHITKAMRGLQDDTIRCTDHLVKIIESLGLTSNQ 180
SPS S+++++QHCMQ++ L+Q+RI E+I +A+R +D+ I T L KIIESL LTS Q
Sbjct: 121 SPSVSNLTSIQHCMQKLQHLEQKRISEYIEQALRSQRDEIIPHTQQLAKIIESLSLTSKQ 180
Query: 181 ELLKESLAVEMERIRAERNQNKGHSDQMNYIVDLISHIRDCMLKIERFEATSGVPIPPYF 240
ELLKES+AVE ER+ A+ N+ DQ+N IV+L+SHIRDCM+++ FEA +GV IP YF
Sbjct: 181 ELLKESVAVERERMNAQVNKTAYELDQINQIVELVSHIRDCMVRLGGFEAINGVRIPSYF 240
Query: 241 RCPLSLELMIDPVIVASGQTYERVFIQKWLDHGLNICPKTRQTLAHTNLIPNYTVKAMIE 300
RCPLSLELM+DPVIVASGQTYER IQKWLD GL ICPKTRQTLAH NLIPNYTVKA+IE
Sbjct: 241 RCPLSLELMMDPVIVASGQTYERSSIQKWLDQGLMICPKTRQTLAHANLIPNYTVKALIE 300
Query: 301 NWCEENNLRLPSYSVHSNIVSVLSPLDHVSAQDLIRTDSFR-SLRGSNSTSRSSVDVGNG 359
NWCEENN+ L S H+NI V SPLDHVSAQD+I DSFR S+ SN TSRSS++VGNG
Sbjct: 301 NWCEENNITLSGTSEHTNITPVPSPLDHVSAQDVIGMDSFRCSIHSSNCTSRSSLEVGNG 360
Query: 360 FQKLKIDVSSRL------------TEKSNHRSPEQSYIHSRSESASSAISSVEYMLPASK 407
+KLK+DVS+R EK +SPEQSYIHSR+ES SSA+SS++ + AS
Sbjct: 361 IEKLKVDVSTRFGGEESNVCKSREPEKLERQSPEQSYIHSRTESTSSAVSSIDSLPTAST 420
Query: 408 ELSRRCSKNEKSSELSG---EIISECPAASPS---------RSDEVTTTPYVKKLIEDLN 455
ELSR +K E + LS E++S P + D++TT+ +V+KL+EDL
Sbjct: 421 ELSRISNKQENGTGLSKTKVEMVSNGKCGPPRILSLPFSDPKFDDLTTSSHVEKLVEDLK 480
Query: 456 STSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLS 515
S SNE+Q AA+ELRLLAKHNMENR+IIG CGAI PL+ LLYSE + TQE+AVTALLNLS
Sbjct: 481 SQSNELQTVAASELRLLAKHNMENRIIIGRCGAIAPLVLLLYSEVKQTQENAVTALLNLS 540
Query: 516 INDENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALV 575
IND NK +IAEAGAIE LIHVLKSGN GAKENSAA LFSLSVLEEYKAKIG SGAVKALV
Sbjct: 541 INDANKVIIAEAGAIESLIHVLKSGNAGAKENSAATLFSLSVLEEYKAKIGCSGAVKALV 600
Query: 576 DLLGSGTLRGRKDAATALFNLSIFHENKARIIQAGAVKHLVDLMDPSTGMVDKAVALLAN 635
DLLGSGTLRG+KDAATALFNLSI HENK RIIQAGAVK+LV LM+P+TGMVDKAVALLAN
Sbjct: 601 DLLGSGTLRGKKDAATALFNLSICHENKPRIIQAGAVKYLVQLMEPATGMVDKAVALLAN 660
Query: 636 LSTVGEGRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCLHSPKFCTLVLQEGAVP 695
LS + EGR AI REGGIP LVE+VE+GS RGKENAASILLQLC++SPKFCTLVLQEGA+P
Sbjct: 661 LSIISEGRFAIVREGGIPLLVELVETGSVRGKENAASILLQLCINSPKFCTLVLQEGAIP 720
Query: 696 PLVGLSQSGTPRAKEKAQQLLSHFRNQREGSTGKKKS 732
PLV LSQSGTPRAKEKAQQLLSHFRNQREG+ K KS
Sbjct: 721 PLVALSQSGTPRAKEKAQQLLSHFRNQREGAAAKGKS 757
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224082828|ref|XP_002306856.1| predicted protein [Populus trichocarpa] gi|222856305|gb|EEE93852.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 993 bits (2567), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 533/761 (70%), Positives = 608/761 (79%), Gaps = 42/761 (5%)
Query: 1 MDETSERCLINSISRFIHLVSCQTIKLKPIQKDYKTMAGALKLLKPLLDEVVDYKIPLDE 60
MD +S RCLIN+ISRFIHLVSCQT K PIQKDYK+M LK LKP+LD VVDY I DE
Sbjct: 1 MDTSSVRCLINTISRFIHLVSCQTRKFMPIQKDYKSMVMMLKHLKPVLDGVVDYSISSDE 60
Query: 61 VLNKECEELDMVVNEAREFMENWSPKMSKIFSVLHSEPLMMKIQSSSLEICHILYRLLQS 120
VL KECEELD VNEAREFMENW P+MSKI SV SE L+ KIQSS+LEIC IL RLLQS
Sbjct: 61 VLCKECEELDTTVNEAREFMENWCPQMSKICSVQQSEALLKKIQSSALEICQILCRLLQS 120
Query: 121 SPSNSSMSAVQHCMQEIHCLKQERIMEHITKAMRGLQDDTIRCTDHLVKIIESLGLTSNQ 180
SPS S+++ VQHCMQE+ LK E I E I +A+R L DD CT+HL+K+ E+LGLTSNQ
Sbjct: 121 SPSASTLTIVQHCMQELQGLKHETITELIEEALRSLSDDVSPCTNHLMKLTETLGLTSNQ 180
Query: 181 ELLKESLAVEMERIRAERNQNKGHSDQMNYIVDLISHIRDCMLKIERFEATSGVPIPPYF 240
ELLKES+AVE ER+ + N+ KG DQ++ IVDLISHIR+ +LK+ERF+ SG PIPPYF
Sbjct: 181 ELLKESVAVEKERMNVKVNKAKGDLDQIDQIVDLISHIRNWLLKVERFDPKSGAPIPPYF 240
Query: 241 RCPLSLELMIDPVIVASGQTYERVFIQKWLDHGLNICPKTRQTLAHTNLIPNYTVKAMIE 300
RCPLSLELM+DPVIVASGQTY+RV IQKWLDHGL+ICP+TRQTL+HTNLIPNYTVKAMI
Sbjct: 241 RCPLSLELMLDPVIVASGQTYDRVSIQKWLDHGLSICPRTRQTLSHTNLIPNYTVKAMIA 300
Query: 301 NWCEENNLRLPSYSVHSNIVSVLSPLDHVSAQDLIRTDSFR---SLRGSNSTSRSSVDVG 357
NWCEENN+R+ S SV S+ DL+ DSFR SL SNSTSRSS++VG
Sbjct: 301 NWCEENNVRVSSDSVPSH-------------HDLLHLDSFRYRCSLHSSNSTSRSSIEVG 347
Query: 358 NGFQKLKIDVSSRLTEKSNHR------------SPEQSYIHSRSESASSAISSVEYMLPA 405
NGF+K KI VSSRL+ + +R S E SYIHSRSES SSAISS+EY+ PA
Sbjct: 348 NGFEKQKIGVSSRLSGEEFNRNHVMGIESFECPSHELSYIHSRSESTSSAISSIEYVPPA 407
Query: 406 SKELSRRCSKNEKSSELSGEIISECPAA--------------SPSRSDEVTTTPYVKKLI 451
S E+ + + ++ ++L A+ S S S ++ TT VKKL+
Sbjct: 408 SDEMLKLLTMHDNVNDLQFHSPKYDMASNGSHNYSRTNSLQFSDSGSHDLCTTSQVKKLV 467
Query: 452 EDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTAL 511
E L S SNEI+ AA ELRLLAKHN+ENR+IIG+ GAI PLLSLLYSE ++TQEHAVTA+
Sbjct: 468 EGLKSQSNEIKTKAAEELRLLAKHNVENRIIIGHSGAIRPLLSLLYSEVKITQEHAVTAV 527
Query: 512 LNLSINDENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRSGAV 571
LNLSIN+ENKAMIAEAGAIEPLIHVL+SGN GAKENSAAALFSLSVLEEYKAKIGRSGAV
Sbjct: 528 LNLSINEENKAMIAEAGAIEPLIHVLRSGNDGAKENSAAALFSLSVLEEYKAKIGRSGAV 587
Query: 572 KALVDLLGSGTLRGRKDAATALFNLSIFHENKARIIQAGAVKHLVDLMDPSTGMVDKAVA 631
KALVDLL GT+RG+KDAATALFNLSIFHENKARI+QAGAVK+LV+LMDP TGMVDKAVA
Sbjct: 588 KALVDLLAYGTIRGKKDAATALFNLSIFHENKARIVQAGAVKYLVELMDPVTGMVDKAVA 647
Query: 632 LLANLSTVGEGRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCLHSPKFCTLVLQE 691
LLANLST+ EGR+AIA+ GGIP LVEVVESGSQRGKENAASIL+QLCL+SPKFCTLVLQE
Sbjct: 648 LLANLSTISEGRMAIAKAGGIPLLVEVVESGSQRGKENAASILMQLCLNSPKFCTLVLQE 707
Query: 692 GAVPPLVGLSQSGTPRAKEKAQQLLSHFRNQREGSTGKKKS 732
GAVPPLV LSQSGTPRAKEKAQQLLSHFR+QREGS GK KS
Sbjct: 708 GAVPPLVALSQSGTPRAKEKAQQLLSHFRSQREGSAGKGKS 748
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224066241|ref|XP_002302042.1| predicted protein [Populus trichocarpa] gi|222843768|gb|EEE81315.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 987 bits (2551), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 520/759 (68%), Positives = 598/759 (78%), Gaps = 33/759 (4%)
Query: 1 MDETSERCLINSISRFIHLVSCQTIKLKPIQKDYKTMAGALKLLKPLLDEVVDYKIPLDE 60
M+ +S RCLINSISRF+HLVSCQT K PIQKDY+ M LK LKP+LDEV DY I DE
Sbjct: 1 METSSVRCLINSISRFMHLVSCQTKKYMPIQKDYEIMVIMLKHLKPVLDEVDDYNISSDE 60
Query: 61 VLNKECEELDMVVNEAREFMENWSPKMSKIFSVLHSEPLMMKIQSSSLEICHILYRLLQS 120
+L +ECEELD+ VNEAREFME W P+MS+I SV SE L+ KIQSS+LEIC +L RLLQ
Sbjct: 61 ILCRECEELDVAVNEAREFMEKWCPQMSRICSVQQSEALLKKIQSSALEICQVLCRLLQG 120
Query: 121 SPSNSSMSAVQHCMQEIHCLKQERIMEHITKAMRGLQDDTIRCTDHLVKIIESLGLTSNQ 180
SP+ SS++ VQHCMQE+ LK E I E I +A+RGL+DD + CTDHL+K+IE+L LTSNQ
Sbjct: 121 SPTTSSLTIVQHCMQELQGLKHETITEIIEEALRGLKDDVVPCTDHLMKLIETLSLTSNQ 180
Query: 181 ELLKESLAVEMERIRAERNQNKGHSDQMNYIVDLISHIRDCMLKIERFEATSGVPIPPYF 240
ELLKES+AVE ER N+ +G+ Q++ IVDLI+ IR +LK+E + SG PIPPYF
Sbjct: 181 ELLKESVAVEKERTNVHINKAEGYLYQIDQIVDLITQIRSWLLKVEHRDPKSGAPIPPYF 240
Query: 241 RCPLSLELMIDPVIVASGQTYERVFIQKWLDHGLNICPKTRQTLAHTNLIPNYTVKAMIE 300
RCPLSLELM+DPVIVASGQTY+RV IQKWLDHGL CP+TRQTL+HTNLIPNYTVKAMI
Sbjct: 241 RCPLSLELMLDPVIVASGQTYDRVSIQKWLDHGLTFCPRTRQTLSHTNLIPNYTVKAMIA 300
Query: 301 NWCEENNLRLPSYSVHSNIVSVLSPLDHVSAQDLIRTDSFR---SLRGSNSTSRSSVDVG 357
NWCEENN+R+ S+S +N VL+ H DL+ DSFR SL SNSTSRSSV+VG
Sbjct: 301 NWCEENNVRVSSHSDCNN--HVLASSHH----DLLHLDSFRNRCSLHRSNSTSRSSVEVG 354
Query: 358 NGFQKLKIDVSSRL------------TEKSNHRSPEQSYIHSRSESASSAISSVEYMLPA 405
NGF+K I VSSRL TE H S SYIHSRSES SSAISS+EY+ P
Sbjct: 355 NGFEKQVIGVSSRLSGEEFNRYNVTGTESFEHPSQGHSYIHSRSESTSSAISSIEYVPPV 414
Query: 406 SKELSRRCSKNEKSSELSGEIISECPAAS------------PSRSDEVTTTPYVKKLIED 453
S E+ + +K++ ++ + S S S ++T T VKKL+E
Sbjct: 415 SDEMLKLSTKHDNVNDFPKTQVDMASNGSHNYSRTNSLQFSDSGSHDLTKTSQVKKLVEG 474
Query: 454 LNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLN 513
L S SNE+Q AA ELRLLAKH+MENR+IIG+ GAI PLLSLL SE +LTQEHAVTALLN
Sbjct: 475 LKSLSNEVQTKAAEELRLLAKHDMENRIIIGHSGAIRPLLSLLSSEVKLTQEHAVTALLN 534
Query: 514 LSINDENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKA 573
LSIN++NKA+IAEAGAIEP+IHVL+SGN GAKENSAAALFSLSVLEEYKAKIGRSGAVKA
Sbjct: 535 LSINEDNKAIIAEAGAIEPIIHVLRSGNNGAKENSAAALFSLSVLEEYKAKIGRSGAVKA 594
Query: 574 LVDLLGSGTLRGRKDAATALFNLSIFHENKARIIQAGAVKHLVDLMDPSTGMVDKAVALL 633
LVDLL SGTLRG+KDAAT LFNLSIFHENKARI+QAGAVK+LV+LMDP TGMVDKAVALL
Sbjct: 595 LVDLLSSGTLRGKKDAATTLFNLSIFHENKARIVQAGAVKYLVELMDPVTGMVDKAVALL 654
Query: 634 ANLSTVGEGRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCLHSPKFCTLVLQEGA 693
ANLST+GEGRLAIA+ GGIP LVEVVESGSQRGKENAASIL+QLCL SPKFCTLVLQEGA
Sbjct: 655 ANLSTIGEGRLAIAKAGGIPLLVEVVESGSQRGKENAASILMQLCLSSPKFCTLVLQEGA 714
Query: 694 VPPLVGLSQSGTPRAKEKAQQLLSHFRNQREGSTGKKKS 732
VPPLV LSQSGTPRAKEKAQQLLSHFR+QRE S GK +S
Sbjct: 715 VPPLVALSQSGTPRAKEKAQQLLSHFRSQREASAGKGRS 753
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255582501|ref|XP_002532036.1| ubiquitin-protein ligase, putative [Ricinus communis] gi|223528306|gb|EEF30352.1| ubiquitin-protein ligase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 932 bits (2408), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 506/757 (66%), Positives = 593/757 (78%), Gaps = 29/757 (3%)
Query: 1 MDETSERCLINSISRFIHLVSCQTIKLKPIQKDYKTMAGALKLLKPLLDEVVDYKIPLDE 60
MD T RCL+NSISRFI LVSCQT K PIQKDY M LK LKP+LDE++D K+ D+
Sbjct: 1 MDMTPVRCLVNSISRFILLVSCQTRKPAPIQKDYGNMVTVLKHLKPVLDEIIDCKLSSDQ 60
Query: 61 VLNKECEELDMVVNEAREFMENWSPKMSKIFSVLHSEPLMMKIQSSSLEICHILYRLLQS 120
+L KECEELD+ VN AR+FMENW PKMSK+ SV SE L MKI+ SS++ICH+L RLL+S
Sbjct: 61 ILYKECEELDLAVNGARDFMENWCPKMSKLCSVQQSEALYMKIRISSVKICHLLSRLLRS 120
Query: 121 SPSNSSMSAVQHCMQEIHCLKQERIMEHITKAMRGLQDDTIRCTDHLVKIIESLGLTSNQ 180
SPS SS++++QHCMQE+ LKQE + EHI +A+R +D+ + C+D LVKII+SL LTS Q
Sbjct: 121 SPSTSSLTSIQHCMQELQSLKQEMMTEHIEEAVRNKRDEVVPCSDPLVKIIQSLSLTSGQ 180
Query: 181 ELLKESLAVEMERIRAERNQNKGHSDQMNYIVDLISHIRDCMLKIERFEATSGVPIPPYF 240
E+LKES+AVE ER+ + N+ KG DQ+N IVDLIS IR+C+LKIER + SGV IP YF
Sbjct: 181 EILKESVAVEKERMNIQVNKAKGDLDQINQIVDLISDIRNCLLKIERVDPKSGVLIPSYF 240
Query: 241 RCPLSLELMIDPVIVASGQTYERVFIQKWLDHGLNICPKTRQTLAHTNLIPNYTVKAMIE 300
RCPLSLELM+DPVIVASGQTYER IQKWL+HGL ICPKTR+TLAH+NLIPNYTVKAMI
Sbjct: 241 RCPLSLELMLDPVIVASGQTYERASIQKWLEHGLTICPKTRKTLAHSNLIPNYTVKAMIS 300
Query: 301 NWCEENNLRLPSYSVHSNIVSVLSPLDHVSAQDLIRTDSFRSLRGSNSTSRSSVDVGNGF 360
NWCEEN++R S S +++S P D + D + SL SNS S+SS++ GNGF
Sbjct: 301 NWCEENHIRPSSNSKQDDLISASVPADALQCSDSLHY----SLHNSNSISKSSLEGGNGF 356
Query: 361 QKLKIDVSSRLT------------EKSNHRSPEQSYIHSRSESASSAISSVEYMLPASKE 408
+K ++ S+L+ E S E SY HSRSES SSAISS+EY+ P + E
Sbjct: 357 EKQRVVFLSKLSREEPNGYQVQKIESFERPSHELSYNHSRSESTSSAISSIEYVPPIANE 416
Query: 409 LSRRCSKNEKSSELSGEIISECPA----------ASP---SRSDEVTTTPYVKKLIEDLN 455
+S K+EK S+ + ++ A P S D++TTT +V+ LIE L
Sbjct: 417 VSMVSRKHEKVSDSIPKTKADGEGNANHKLNRTRAVPFLDSGFDDLTTTSHVECLIEGLK 476
Query: 456 STSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLS 515
S SNE+QA+AA ELRLLAK+ MENR+IIG GAI PLLSLLYS + TQEHAVTALLNLS
Sbjct: 477 SQSNELQATAAEELRLLAKNKMENRIIIGRSGAITPLLSLLYSGVKQTQEHAVTALLNLS 536
Query: 516 INDENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALV 575
IN+E K+MIAEAGA+EPLIHVLKSGN GAKENSAAALFSLSVLEEYKAKIG SGAVKALV
Sbjct: 537 INEEVKSMIAEAGALEPLIHVLKSGNDGAKENSAAALFSLSVLEEYKAKIGCSGAVKALV 596
Query: 576 DLLGSGTLRGRKDAATALFNLSIFHENKARIIQAGAVKHLVDLMDPSTGMVDKAVALLAN 635
DLL SGTLRG+KDAATALFNLSI HENKARI+QAGAVK+LV+LMDP+TGMVDK+VALLAN
Sbjct: 597 DLLASGTLRGKKDAATALFNLSILHENKARIVQAGAVKYLVELMDPATGMVDKSVALLAN 656
Query: 636 LSTVGEGRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCLHSPKFCTLVLQEGAVP 695
LST+GEGRLAIAR GGIPSLVE+VESGSQRGKENAAS+LLQLCL+SPKFCT VLQEGAVP
Sbjct: 657 LSTIGEGRLAIARAGGIPSLVEIVESGSQRGKENAASVLLQLCLNSPKFCTFVLQEGAVP 716
Query: 696 PLVGLSQSGTPRAKEKAQQLLSHFRNQREGSTGKKKS 732
PLV LSQSGT RAKEKAQQLLSHFRNQREGS GK KS
Sbjct: 717 PLVALSQSGTLRAKEKAQQLLSHFRNQREGSMGKGKS 753
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356572260|ref|XP_003554287.1| PREDICTED: U-box domain-containing protein 3-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 880 bits (2274), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 478/756 (63%), Positives = 573/756 (75%), Gaps = 27/756 (3%)
Query: 1 MDETSERCLINSISRFIHLVSCQTIKLKPIQKDYKTMAGALKLLKPLLDEVVDYKIPLDE 60
++ +S +CL+NSISRF+HLV CQ +K P+QK+ M G LK LKP+LD++VD+KIPLDE
Sbjct: 23 INTSSVKCLVNSISRFMHLVCCQAVKPMPLQKNCNNMVGVLKRLKPVLDDIVDFKIPLDE 82
Query: 61 VLNKECEELDMVVNEAREFMENWSPKMSKIFSVLHSEPLMMKIQSSSLEICHILYRLLQS 120
L++ECEELDM VNEAREF+E PKMS+I SVL S L++K+Q+SS +ICH++ + L++
Sbjct: 83 NLHRECEELDMQVNEAREFIEKLGPKMSRIHSVLQSGELLIKLQNSSYKICHMIVKSLKA 142
Query: 121 SPSNSSMSAVQHCMQEIHCLKQERIMEHITKAMRGLQDDTIRCTDHLVKIIESLGLTSNQ 180
S ++ Q MQE+ CLK+E M +I +A+R +D+ C D L +II L LTSNQ
Sbjct: 143 PASVLVLATFQQYMQELQCLKKEPAMVYIEEALRNQRDNIEPCYDSLKEIIGLLKLTSNQ 202
Query: 181 ELLKESLAVEMERIRAERNQNKGHSDQMNYIVDLISHIRDCMLKIERFEATSGVPIPPYF 240
ELLKES+AVE ER AE N+ KG+ D++N IV+L+ ++RD ++K E E SGV IPPYF
Sbjct: 203 ELLKESIAVEKERSNAEVNKTKGNLDEINQIVNLVCNLRDYVMKFECPEVKSGVSIPPYF 262
Query: 241 RCPLSLELMIDPVIVASGQTYERVFIQKWLDHGLNICPKTRQTLAHTNLIPNYTVKAMIE 300
RCPLSLELM DPVIVASGQTYER IQKWLDHGL +CP T L HTNLIPNYTVKAMI
Sbjct: 263 RCPLSLELMSDPVIVASGQTYERQSIQKWLDHGLTVCPNTHHRLVHTNLIPNYTVKAMIA 322
Query: 301 NWCEENNLRLPSYSVHSNIVSVLSPLDHVSAQDLIRTDSFRSLRGSNSTSRSSVDVGNGF 360
NWCEENN++LP S SN + SP DH+ QDL R SF+S S+S++ S N F
Sbjct: 323 NWCEENNVKLPCNSKQSNSTRISSPSDHLLHQDLDRQCSFQS---SDSSNSYSNQTANAF 379
Query: 361 QKLKIDVS---------SR--LTEKSNHRSPEQSYIHSRSESASSAISSVEYMLPASKEL 409
+K K D S SR TEK +SP S + RSES SS+ISS +Y+LP SKE+
Sbjct: 380 EKQKDDNSFGSGRGSHRSRNGQTEKFEQQSPAPSCSNRRSESFSSSISSTDYVLPVSKEV 439
Query: 410 SRRCSK--------NEKSSELSGEIISECP--AASPSR---SDEVTTTPYVKKLIEDLNS 456
S +K +E E + II+ A+ P SDE+ TT +V +LIEDL S
Sbjct: 440 SVISNKHHNVELMEDENKYESNNNIITSHSKVASHPVSNLGSDELITTSHVHELIEDLQS 499
Query: 457 TSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSI 516
SNE + +AA +LR KHNMENR+I+G CGAI PLLSLLYS+ ++TQEHAVTALLNLSI
Sbjct: 500 QSNETRTAAAEQLRFCTKHNMENRIIVGQCGAIMPLLSLLYSDMKITQEHAVTALLNLSI 559
Query: 517 NDENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVD 576
N+ NKA+I EAGAIEPLIH+L+ GN GAKENSAAALFSLSV++ KAKIGRSGAVKALV
Sbjct: 560 NEGNKALIMEAGAIEPLIHLLEKGNDGAKENSAAALFSLSVIDNNKAKIGRSGAVKALVG 619
Query: 577 LLGSGTLRGRKDAATALFNLSIFHENKARIIQAGAVKHLVDLMDPSTGMVDKAVALLANL 636
LL SGTLRG+KDAATALFNLSIFHENKARI+QAGAVK LV L+DP+ MVDKAVALLANL
Sbjct: 620 LLASGTLRGKKDAATALFNLSIFHENKARIVQAGAVKFLVLLLDPTDKMVDKAVALLANL 679
Query: 637 STVGEGRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCLHSPKFCTLVLQEGAVPP 696
ST+ EGR+ IAREGGIPSLVE+VESGSQRGKENAASILLQ+CLHS KFCTLVLQEGAVPP
Sbjct: 680 STIAEGRIEIAREGGIPSLVEIVESGSQRGKENAASILLQMCLHSQKFCTLVLQEGAVPP 739
Query: 697 LVGLSQSGTPRAKEKAQQLLSHFRNQREGSTGKKKS 732
LV LSQSGTPRAKEKAQQLLSHFRNQREG+TGK KS
Sbjct: 740 LVALSQSGTPRAKEKAQQLLSHFRNQREGATGKGKS 775
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356503616|ref|XP_003520603.1| PREDICTED: U-box domain-containing protein 3-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 858 bits (2218), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 474/760 (62%), Positives = 560/760 (73%), Gaps = 32/760 (4%)
Query: 1 MDETSERCLINSISRFIHLVSCQTIKLKPIQKDYKTMAGALKLLKPLLDEVVDYKIPLDE 60
++ +S +CL+NSISRFIHLVSCQ +K P+QK+ M LK LKP+LD++VD+KIP DE
Sbjct: 4 INTSSVKCLVNSISRFIHLVSCQAVKPMPLQKNCNNMVCVLKHLKPVLDDIVDFKIPFDE 63
Query: 61 VLNKECEELDMVVNEAREFMENWSPKMSKIFSVLHSEPLMMKIQSSSLEICHILYRLLQS 120
L++ECEELDM VNEAREF+E W PKMS+I SVL S L++K+Q+SS +ICH++ + L+
Sbjct: 64 NLHRECEELDMRVNEAREFIEKWGPKMSRIHSVLQSGELLIKLQNSSYKICHMIVKSLKG 123
Query: 121 SPSNSSMSAVQHCMQEIHCLKQERIMEHITKAMRGLQDDTIRCTDHLVKIIESLGLTSNQ 180
S +Q MQE+ CLK+E M +I A+R +D+ C D L +II L + SNQ
Sbjct: 124 PASVLVSGNLQQYMQELQCLKKEPAMIYIEDALRNQRDNIEPCYDSLKEIIRLL-MISNQ 182
Query: 181 ELLKESLAVEMERIRAERNQNKGHSDQMNYIVDLISHIRDCMLKIERFEATSGVPIPPYF 240
ELL ES+AVE ER AE N+ KG D++N IV+L+ +RD ++K ER E SGV IPPYF
Sbjct: 183 ELLIESIAVEKERSNAEVNKTKGDLDEINQIVNLVCSLRDYVMKFERPEVKSGVSIPPYF 242
Query: 241 RCPLSLELMIDPVIVASGQTYERVFIQKWLDHGLNICPKTRQTLAHTNLIPNYTVKAMIE 300
RCPLSLELM D VIVASGQTYER IQKWLDHGL +CP TRQ L HTNLIPNYTVKAMI
Sbjct: 243 RCPLSLELMSDAVIVASGQTYERQSIQKWLDHGLTVCPNTRQILVHTNLIPNYTVKAMIA 302
Query: 301 NWCEENNLRLPSYSVHSNIVSVLSPLDHVSAQDLIRTDSFRSLRGSNSTSRSSVDVGNGF 360
NWCEENN++LPS S SN + SP DH+ QDL D S S S+ +S + N F
Sbjct: 303 NWCEENNVKLPSNSKQSNSSHISSPSDHLLHQDL---DRLCSFESSASSDSNSNQIANAF 359
Query: 361 QKLKIDVSSRL-----------TEKSNHRSPEQSYIHSRSESASSAISSVEYMLPASKEL 409
+K K D S R TEK +SP S +SRSES SS+ISS +Y+ P KE+
Sbjct: 360 EKPKDDNSFRSSRESDRSWNGETEKFEQQSPAPSCSNSRSESFSSSISSTDYVFPVLKEV 419
Query: 410 S----------------RRCSKNEKSSELSGEIISECPAAS-PSRSDEVTTTPYVKKLIE 452
S R +N+ + + I S AS P S+E+ TT +V +LIE
Sbjct: 420 SGISNKHQNVDPGSKIGRMEDENKYNESNNISITSHSKVASHPVGSNELITTSHVNELIE 479
Query: 453 DLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALL 512
DL S SNE Q +AA +LRL KHNMENR+ +G CGAI PLLSLLYSE ++ QEHAVTALL
Sbjct: 480 DLQSQSNETQTAAAEQLRLCTKHNMENRISVGRCGAIMPLLSLLYSERKIIQEHAVTALL 539
Query: 513 NLSINDENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVK 572
NLSIN+ NKA+I EAGAIEPLIHVLK+GN GAKENSAAALFSLSV++ KAKIGRSGAVK
Sbjct: 540 NLSINEGNKALIMEAGAIEPLIHVLKTGNDGAKENSAAALFSLSVIDNNKAKIGRSGAVK 599
Query: 573 ALVDLLGSGTLRGRKDAATALFNLSIFHENKARIIQAGAVKHLVDLMDPSTGMVDKAVAL 632
ALV LL SGTLRG+KD+ATALFNLSIFHENKARI+QAGAVK LV L+DP+ MVDKAVAL
Sbjct: 600 ALVGLLASGTLRGKKDSATALFNLSIFHENKARIVQAGAVKFLVLLLDPTDKMVDKAVAL 659
Query: 633 LANLSTVGEGRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCLHSPKFCTLVLQEG 692
LANLST+ EGR+ IAREGGIPSLVE+VESGS RGKENAASILLQLCLH+ KFCTLVLQEG
Sbjct: 660 LANLSTIAEGRIEIAREGGIPSLVEIVESGSLRGKENAASILLQLCLHNQKFCTLVLQEG 719
Query: 693 AVPPLVGLSQSGTPRAKEKAQQLLSHFRNQREGSTGKKKS 732
AVPPLV LSQSGTPRAKEKAQQLLSHFRNQREG GK KS
Sbjct: 720 AVPPLVALSQSGTPRAKEKAQQLLSHFRNQREGVKGKGKS 759
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449462443|ref|XP_004148950.1| PREDICTED: U-box domain-containing protein 3-like [Cucumis sativus] gi|449524836|ref|XP_004169427.1| PREDICTED: U-box domain-containing protein 3-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 823 bits (2127), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 472/785 (60%), Positives = 562/785 (71%), Gaps = 64/785 (8%)
Query: 1 MDETSERCLINSISRFIHLVSCQTIKLKPIQKDYKTMAGALKLLKPLLDEVVDYKIPLDE 60
M S +CL NSISRFIHLVSC T K P+ K K + LKLLK +LD+V+ K+ DE
Sbjct: 1 MGTASVQCLTNSISRFIHLVSCHTTKPLPLPKKCKNLVVVLKLLKVVLDDVISLKLSSDE 60
Query: 61 VLNKECEELDMVVNEAREFMENWSPKMSKIFSVLHSEPLMMKIQSSSLEICHILYRLLQS 120
+L ECE LD VNEAREF+ENW PK SKI S L +PL++KIQSSS IC I+++L +S
Sbjct: 61 LLYSECESLDAAVNEAREFVENWCPKTSKICSALKCDPLLIKIQSSSQVICEIIWKLSES 120
Query: 121 SPSNSSMSAVQHCMQEIHCLKQERIMEHITKAMRGLQDDTIRCTDHLVKIIESLGLTSNQ 180
+SS+SAVQ C++ + LKQERI + I +A+ + ++HL+K+IE+L LTSNQ
Sbjct: 121 VSCSSSLSAVQKCLEGLQSLKQERISDSIEEALISQRSGIGPNSEHLLKLIEALHLTSNQ 180
Query: 181 ELLKESLAVEMERIRAERNQNKGHSDQMNYIVDLISHIRDCMLKIERFEATSGVPIPPYF 240
ELLKE++AVE ERI A RN K +N I+DLI IRD M++ + F +GV +P YF
Sbjct: 181 ELLKETIAVEKERINAARNNAKEELHHINQIMDLIIRIRDWMVRKDYFHGINGVSVPSYF 240
Query: 241 RCPLSLELMIDPVIVASGQTYERVFIQKWLDHGLNICPKTRQTLAHTNLIPNYTVKAMIE 300
RCPLSLELM+DPVIVASGQTY+R IQKW+D GLNICP T Q L HTNLI N+TVKAMI
Sbjct: 241 RCPLSLELMLDPVIVASGQTYDRSSIQKWIDSGLNICPNTHQMLTHTNLISNHTVKAMIL 300
Query: 301 NWCEENNLRLPSYSVHSNIVSVLSPLDHVSAQDLIRTDSFR-SLRGSNSTSRSSVDVGNG 359
+WC+EN L S S +S Q+L R+DSF S+ GSNST+ SS +V G
Sbjct: 301 SWCDENKLNFSSLSSLVQ----------LSQQNLNRSDSFHYSVHGSNSTAGSSPEVEKG 350
Query: 360 FQKLKIDVSSRL------------TEKSNHRSPEQSYIHSRSESASSAISSVEYMLPASK 407
K DV + L TEK + SP+QSYI+SRS SASSA SS++Y+ A
Sbjct: 351 SDKQNGDVFTCLVGENSNEGRRNGTEKFDQPSPQQSYIYSRSVSASSAFSSIDYIPSAFN 410
Query: 408 ELSRRCSKNEKSSELSGEIISECPAAS--------------------------------- 434
EL + +K+E ELSGEI SE PA S
Sbjct: 411 ELLKVSNKHEYIKELSGEITSEHPAKSHSEPSGFTSSLGDGQLQACKTETNMVENGNSNG 470
Query: 435 --------PSRSDEVTTTPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNC 486
S SD ++ ++KKLI DL S +E+Q AA ELRLLAK N+ENR+IIG C
Sbjct: 471 RMDSLIPVESESDNLSGDLHIKKLIADLKSQRDEVQMKAAEELRLLAKDNVENRVIIGQC 530
Query: 487 GAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAMIAEAGAIEPLIHVLKSGNGGAKE 546
GAI PLLSLLYSE +L QEHAVTALLNLSI++ NKAMIAEAGAIEPLIHVLK+G+ AKE
Sbjct: 531 GAIGPLLSLLYSEGKLIQEHAVTALLNLSIDENNKAMIAEAGAIEPLIHVLKTGSSAAKE 590
Query: 547 NSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFHENKARI 606
NSAA+LFSLSVLEEYKAKIGRSGA++ALV+LLG GTLRG+KDAATALFNLSIFHENKARI
Sbjct: 591 NSAASLFSLSVLEEYKAKIGRSGAIRALVELLGVGTLRGKKDAATALFNLSIFHENKARI 650
Query: 607 IQAGAVKHLVDLMDPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVESGSQRG 666
+QAGAVK+LV+L+D +TGMVDKA ALLANLST+ EGRLAIAREGGIP LVE+VE+G+ RG
Sbjct: 651 VQAGAVKYLVELLDTATGMVDKAAALLANLSTISEGRLAIAREGGIPLLVEIVETGTMRG 710
Query: 667 KENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFRNQREGS 726
KENAASILLQLCLHS KFC LVLQEGAVPPLV LSQSGTPRAKEKAQQLLSHFRNQR+G+
Sbjct: 711 KENAASILLQLCLHSNKFCILVLQEGAVPPLVALSQSGTPRAKEKAQQLLSHFRNQRDGT 770
Query: 727 TGKKK 731
TGK K
Sbjct: 771 TGKGK 775
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297744157|emb|CBI37127.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 817 bits (2111), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 438/697 (62%), Positives = 510/697 (73%), Gaps = 83/697 (11%)
Query: 37 MAGALKLLKPLLDEVVDYKIPLDEVLNKECEELDMVVNEAREFMENWSPKMSKIFSVLHS 96
M G LKLLKP+LD+VV+ KIP DE+L KECEELDM VNEAREF+ENW PKMSKIFSVL S
Sbjct: 1 MVGLLKLLKPVLDDVVNCKIPSDEILFKECEELDMAVNEAREFVENWCPKMSKIFSVLQS 60
Query: 97 EPLMMKIQSSSLEICHILYRLLQSSPSNSSMSAVQHCMQEIHCLKQERIMEHITKAMRGL 156
E L+MKIQSSSLEIC IL RLL SSPS S+++++QHCMQ++ L+Q+
Sbjct: 61 EQLVMKIQSSSLEICFILCRLLHSSPSVSNLTSIQHCMQKLQHLEQK------------- 107
Query: 157 QDDTIRCTDHLVKIIESLGLTSNQELLKESLAVEMERIRAERNQNKGHSDQMNYIVDLIS 216
R ++++ + + + L DQ+N IV+L+S
Sbjct: 108 -----RISEYIEQALRTYEL-----------------------------DQINQIVELVS 133
Query: 217 HIRDCMLKIERFEATSGVPIPPYFRCPLSLELMIDPVIVASGQTYERVFIQKWLDHGLNI 276
HIRDCM+++ FEA +GV IP YFRCPLSLELM+DPVIVASGQTYER IQKWLD GL I
Sbjct: 134 HIRDCMVRLGGFEAINGVRIPSYFRCPLSLELMMDPVIVASGQTYERSSIQKWLDQGLMI 193
Query: 277 CPKTRQTLAHTNLIPNYTVKAMIENWCEENNLRLPSYSVHSNIVSVLSPLDHVSAQDLIR 336
CPKTRQTLAH NLIPNYTVKA+IENWCEENN+ L S H+NI V SPLDHVSAQD+I
Sbjct: 194 CPKTRQTLAHANLIPNYTVKALIENWCEENNITLSGTSEHTNITPVPSPLDHVSAQDVIG 253
Query: 337 TDSFRSLRGSNSTSRSSVDVGNGFQKLKIDVSSRLTEKSNHRSPEQSYIHSRSESASSAI 396
DSF +GN KS +P S+I + + +
Sbjct: 254 MDSF---------------LGN--------------LKSWSDNPLNSHIFTAGLNQPQVL 284
Query: 397 SSVEYMLPA-SKELSRRCSKNEKSSELSGEIISECPAASPSRSDEVTTTPYVKKLIEDLN 455
V ++P ++L+ N K I+S P + P + D++TT+ +V+KL+EDL
Sbjct: 285 FPV--LIPYLPRQLNLEMVSNGKCG--PPRILS-LPFSDP-KFDDLTTSSHVEKLVEDLK 338
Query: 456 STSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLS 515
S SNE+Q AA+ELRLLAKHNMENR+IIG CGAI PL+ LLYSE + TQE+AVTALLNLS
Sbjct: 339 SQSNELQTVAASELRLLAKHNMENRIIIGRCGAIAPLVLLLYSEVKQTQENAVTALLNLS 398
Query: 516 INDENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALV 575
IND NK +IAEAGAIE LIHVLKSGN GAKENSAA LFSLSVLEEYKAKIG SGAVKALV
Sbjct: 399 INDANKVIIAEAGAIESLIHVLKSGNAGAKENSAATLFSLSVLEEYKAKIGCSGAVKALV 458
Query: 576 DLLGSGTLRGRKDAATALFNLSIFHENKARIIQAGAVKHLVDLMDPSTGMVDKAVALLAN 635
DLLGSGTLRG+KDAATALFNLSI HENK RIIQAGAVK+LV LM+P+TGMVDKAVALLAN
Sbjct: 459 DLLGSGTLRGKKDAATALFNLSICHENKPRIIQAGAVKYLVQLMEPATGMVDKAVALLAN 518
Query: 636 LSTVGEGRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCLHSPKFCTLVLQEGAVP 695
LS + EGR AI REGGIP LVE+VE+GS RGKENAASILLQLC++SPKFCTLVLQEGA+P
Sbjct: 519 LSIISEGRFAIVREGGIPLLVELVETGSVRGKENAASILLQLCINSPKFCTLVLQEGAIP 578
Query: 696 PLVGLSQSGTPRAKEKAQQLLSHFRNQREGSTGKKKS 732
PLV LSQSGTPRAKEKAQQLLSHFRNQREG+ K KS
Sbjct: 579 PLVALSQSGTPRAKEKAQQLLSHFRNQREGAAAKGKS 615
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297820234|ref|XP_002878000.1| armadillo/beta-catenin repeat family protein [Arabidopsis lyrata subsp. lyrata] gi|297323838|gb|EFH54259.1| armadillo/beta-catenin repeat family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 763 bits (1971), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 433/760 (56%), Positives = 548/760 (72%), Gaps = 28/760 (3%)
Query: 1 MDETSERCLINSISRFIHLVSCQTIKLKPIQKDYKTMAGALKLLKPLLDEVVDYKIPLDE 60
MD RCL+NSISR++HLV+CQTI+ PIQ M LKLLKPLLDEVVD KIP D+
Sbjct: 1 MDPVPFRCLLNSISRYLHLVACQTIRFIPIQTCIGNMVLLLKLLKPLLDEVVDCKIPSDD 60
Query: 61 VLNKECEELDMVVNEAREFMENWSPKMSKIFSVLHSEPLMMKIQSSSLEICHILYRLLQS 120
L K CE+LD V+N+AREF+E+WSPK+SK+F V E L+ K+Q+ SLEI IL +L QS
Sbjct: 61 CLYKGCEDLDSVINQAREFLEDWSPKLSKLFGVFQCEVLLGKVQTCSLEISRILLQLSQS 120
Query: 121 SPSNSSMSAVQHCMQEIHCLKQE-RIMEHITKAMRGLQDDTIRCTDH-LVKIIESLGLTS 178
SP SS+ +V+ C+QEI KQE + EH+ A+R +DD +H L II+ LGL S
Sbjct: 121 SPETSSVQSVERCVQEIESFKQEGTLTEHMENALRNQKDDIASLDNHHLQSIIQMLGLIS 180
Query: 179 NQELLKESLAVEMERIRAERNQNKGHSDQMNYIVDLISHIRDCMLKIERFEATSGVPIPP 238
NQ+LLKES+AVE ERIR++ +++K +Q +++L+ IR+ MLK E E G+ IPP
Sbjct: 181 NQDLLKESIAVEKERIRSQASKSKEDMEQTEQLIELVLCIREHMLKTEFLEVAKGISIPP 240
Query: 239 YFRCPLSLELMIDPVIVASGQTYERVFIQKWLDHGLNICPKTRQTLAHTNLIPNYTVKAM 298
YFRCPLS ELM+DPVIVASGQT++R I+KWLD+GL +CP+TRQ L H LIPNYTVKAM
Sbjct: 241 YFRCPLSTELMLDPVIVASGQTFDRTSIKKWLDNGLAVCPRTRQVLTHQELIPNYTVKAM 300
Query: 299 IENWCEENNLRLPSYSVHSNIVSVLSPL-DHVSAQDLIRTDSFRSLRGSNSTSRSSV-DV 356
I +W E N + L + S H S + +++ +QD RT+SFR S+S + S +
Sbjct: 301 IASWLEANRINLATNSCHQYDGGDASSMANNMGSQDFNRTESFRFSLRSSSFTSRSSLET 360
Query: 357 GNGFQKLKIDVSSRLTEKSNHR--------SPEQSYIHSRSESASSAISSVEYMLPASKE 408
GNGF+KLKI+V L +S + SP QSY HSRSES S +SSV+Y+ + E
Sbjct: 361 GNGFEKLKINVPVSLCGESQSKDLEIFELLSPGQSYTHSRSESVCSVVSSVDYVPSVTHE 420
Query: 409 LSRRCSKNEKSSELSGEIISECPAA-----SPSRSDEVTT----------TPYVKKLIED 453
++ SSE+S + SE + S +++ E + T + KL+ED
Sbjct: 421 TESILGNHQSSSEMSPKKNSESSSNVNHEHSAAKTYECSVQDLDDSGTMMTSHTIKLVED 480
Query: 454 LNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLN 513
L + SN+++ +AAAE+R L +++ENR+ IG CGAI PLLSLLYSE +LTQEHAVTALLN
Sbjct: 481 LKNGSNKVKTAAAAEIRHLTINSIENRVHIGRCGAITPLLSLLYSEEKLTQEHAVTALLN 540
Query: 514 LSINDENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRS-GAVK 572
LSI++ NKAMI EAGAIEPL+HVL +GN AKENSAA LFSLSVL+ + +IG+S A++
Sbjct: 541 LSISELNKAMIVEAGAIEPLVHVLNTGNDRAKENSAATLFSLSVLQVNRERIGQSNAAIQ 600
Query: 573 ALVDLLGSGTLRGRKDAATALFNLSIFHENKARIIQAGAVKHLVDLMDPSTGMVDKAVAL 632
ALV+LLG GT RG+KDAA+ALFNLSI H+NKARI+QA A+K+LV+L+DP MVDKAVAL
Sbjct: 601 ALVNLLGKGTFRGKKDAASALFNLSITHDNKARIVQAKAIKYLVELLDPDLEMVDKAVAL 660
Query: 633 LANLSTVGEGRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCLHSPKFCTLVLQEG 692
LANLS VGEGR AI REGGIP LVE V+ GSQRGKENAAS+LLQLCL+SPKFCTLVLQEG
Sbjct: 661 LANLSAVGEGRQAIVREGGIPLLVETVDLGSQRGKENAASVLLQLCLNSPKFCTLVLQEG 720
Query: 693 AVPPLVGLSQSGTPRAKEKAQQLLSHFRNQREGSTGKKKS 732
A+PPLV LSQSGT RAKEKAQQLLSHFRNQR+ K +S
Sbjct: 721 AIPPLVALSQSGTQRAKEKAQQLLSHFRNQRDARMKKGRS 760
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 732 | ||||||
| TAIR|locus:2045334 | 829 | PUB4 "plant U-box 4" [Arabidop | 0.423 | 0.373 | 0.677 | 5.8e-163 | |
| TAIR|locus:2158252 | 707 | AT5G67340 [Arabidopsis thalian | 0.382 | 0.396 | 0.640 | 3.7e-146 | |
| TAIR|locus:2102455 | 760 | AT3G54790 [Arabidopsis thalian | 0.948 | 0.913 | 0.385 | 1.5e-113 | |
| TAIR|locus:2082682 | 632 | PUB14 "plant U-box 14" [Arabid | 0.393 | 0.455 | 0.501 | 3e-93 | |
| TAIR|locus:2075140 | 660 | PUB13 "plant U-box 13" [Arabid | 0.401 | 0.445 | 0.468 | 4.2e-91 | |
| UNIPROTKB|Q5VRH9 | 611 | PUB12 "U-box domain-containing | 0.378 | 0.453 | 0.482 | 3.5e-88 | |
| UNIPROTKB|Q0IMG9 | 694 | SPL11 "E3 ubiquitin-protein li | 0.368 | 0.389 | 0.520 | 1.5e-85 | |
| TAIR|locus:2162276 | 660 | PUB15 "Plant U-Box 15" [Arabid | 0.400 | 0.443 | 0.450 | 5.7e-84 | |
| TAIR|locus:2017719 | 612 | AT1G23030 [Arabidopsis thalian | 0.374 | 0.447 | 0.456 | 9.5e-84 | |
| TAIR|locus:2013990 | 628 | AT1G71020 [Arabidopsis thalian | 0.374 | 0.436 | 0.454 | 8.2e-81 |
| TAIR|locus:2045334 PUB4 "plant U-box 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1009 (360.2 bits), Expect = 5.8e-163, Sum P(2) = 5.8e-163
Identities = 212/313 (67%), Positives = 250/313 (79%)
Query: 418 KSSELSGEIISECPAASPSRS-DEVTTTPYVKKLIEDLNSTSNEIQASAAAELRLLAKHN 476
+ SE G I P+ R EV T VKKL+E+L S+S + Q A AELRLLAKHN
Sbjct: 518 RPSERLGSRIVSAPSNETRRDLSEVETQ--VKKLVEELKSSSLDTQRQATAELRLLAKHN 575
Query: 477 MENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAMIAEAGAIEPLIHV 536
M+NR++IGN GAI L+ LLYS TQE+AVTALLNLSIND NK IA+AGAIEPLIHV
Sbjct: 576 MDNRIVIGNSGAIVLLVELLYSTDSATQENAVTALLNLSINDNNKKAIADAGAIEPLIHV 635
Query: 537 LKSGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNL 596
L++G+ AKENSAA LFSLSV+EE K KIG+SGA+ LVDLLG+GT RG+KDAATALFNL
Sbjct: 636 LENGSSEAKENSAATLFSLSVIEENKIKIGQSGAIGPLVDLLGNGTPRGKKDAATALFNL 695
Query: 597 SIFHENKARIIQAGAVKHLVDLMDPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLV 656
SI ENKA I+Q+GAV++L+DLMDP+ GMVDKAVA+LANL+T+ EGR AI +EGGIP LV
Sbjct: 696 SIHQENKAMIVQSGAVRYLIDLMDPAAGMVDKAVAVLANLATIPEGRNAIGQEGGIPLLV 755
Query: 657 EVVESGSQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLL 716
EVVE GS RGKENAA+ LLQL +S +FC +VLQEGAVPPLV LSQSGTPRA+EKAQ LL
Sbjct: 756 EVVELGSARGKENAAAALLQLSTNSGRFCNMVLQEGAVPPLVALSQSGTPRAREKAQALL 815
Query: 717 SHFRNQREGSTGK 729
S+FRNQR G+ G+
Sbjct: 816 SYFRNQRHGNAGR 828
|
|
| TAIR|locus:2158252 AT5G67340 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 902 (322.6 bits), Expect = 3.7e-146, Sum P(2) = 3.7e-146
Identities = 180/281 (64%), Positives = 226/281 (80%)
Query: 447 VKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEH 506
VKKLI+DL S+S + Q A A +R+LA+++ +NR++I C AIP L+SLLYS + Q
Sbjct: 423 VKKLIDDLKSSSLDTQREATARIRILARNSTDNRIVIARCEAIPSLVSLLYSTDERIQAD 482
Query: 507 AVTALLNLSINDENKAMIAEAGAIEPLIHVLKSGN-GGAKENSAAALFSLSVLEEYKAKI 565
AVT LLNLSIND NK++IAE+GAI PLIHVLK+G AK NSAA LFSLSV+EEYK +I
Sbjct: 483 AVTCLLNLSINDNNKSLIAESGAIVPLIHVLKTGYLEEAKANSAATLFSLSVIEEYKTEI 542
Query: 566 GRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFHENKARIIQAGAVKHLVDLMDPSTGM 625
G +GA++ LVDLLGSG+L G+KDAATALFNLSI HENK ++I+AGAV++LV+LMDP+ GM
Sbjct: 543 GEAGAIEPLVDLLGSGSLSGKKDAATALFNLSIHHENKTKVIEAGAVRYLVELMDPAFGM 602
Query: 626 VDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCLHSPKFC 685
V+KAV +LANL+TV EG++AI EGGIP LVEVVE GS RGKENA + LLQLC HSPKFC
Sbjct: 603 VEKAVVVLANLATVREGKIAIGEEGGIPVLVEVVELGSARGKENATAALLQLCTHSPKFC 662
Query: 686 TLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFRNQREGS 726
V++EG +PPLV L++SGT R KEKAQ LL +F+ R+ +
Sbjct: 663 NNVIREGVIPPLVALTKSGTARGKEKAQNLLKYFKAHRQSN 703
|
|
| TAIR|locus:2102455 AT3G54790 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1120 (399.3 bits), Expect = 1.5e-113, P = 1.5e-113
Identities = 279/724 (38%), Positives = 407/724 (56%)
Query: 1 MDETSERCLINSISRFIHLVSCQTIKLKPIQKDYKTMAGALKLLKPLLDEVVDYKIPLDE 60
MD RCL+NSISR++HLV+CQTI+ PIQ M LKLLKPLLDEVVD KIP D+
Sbjct: 1 MDPVPVRCLLNSISRYLHLVACQTIRFNPIQTCIGNMVLLLKLLKPLLDEVVDCKIPSDD 60
Query: 61 VLNKECEELDMVVNEAREFMENWSPKMSKIFSVLHSEPLMMKIQSSSLEICHILYRLLQX 120
L K CE+LD VVN+AREF+E+WSPK+SK+F V E L+ K+Q+ SLEI IL +L Q
Sbjct: 61 CLYKGCEDLDSVVNQAREFLEDWSPKLSKLFGVFQCEVLLGKVQTCSLEISRILLQLSQS 120
Query: 121 XXXXXXXXAVQHCMQEIHCLKQE-RIMEHITKAMRGLQDD-TIRCTDHLVKIIESLGLTS 178
+V+ C+QE KQE +ME + A+R +DD T +HL II+ LGL S
Sbjct: 121 SPVTSSVQSVERCVQETESFKQEGTLMELMENALRNQKDDITSLDNNHLESIIQMLGLIS 180
Query: 179 NQELLKESLAVEMERIRAERNQNKGHSDQMNYIVDLISHIRDCMLKIERFEATSGVPIPP 238
NQ+LLKES+ VE ERIR++ ++++ +Q +++L+ IR+ MLK E E G+ IPP
Sbjct: 181 NQDLLKESITVEKERIRSQASKSEEDMEQTEQLIELVLCIREHMLKTEFLEVAKGISIPP 240
Query: 239 YFRCPLSLELMIDPVIVASGQTYERVFIQKWLDHGLNICPKTRQTLAHTNLIPNYTVKAM 298
YFRCPLS ELM+DPVIVASGQT++R I+KWLD+GL +CP+TRQ L H LIPNYTVKAM
Sbjct: 241 YFRCPLSTELMLDPVIVASGQTFDRTSIKKWLDNGLAVCPRTRQVLTHQELIPNYTVKAM 300
Query: 299 IENWCEENNLRLPSYSVHSNIVSVLSPL-DHVSAQDLIRTDSFXXXXXXXXXXX-XXVDV 356
I +W E N + L + S H S + +++ +QD RT+SF ++
Sbjct: 301 IASWLEANRINLATNSCHQYDGGDASSMANNMGSQDFNRTESFRFSLRSSSLTSRSSLET 360
Query: 357 GNGFQKLKIDVSSRLTEKSNHRSPEQXXXXXXXXXXXXXXXXXXXMLPASKELSRRCSKN 416
GNGF+KLKI+VS+ L +S + E + +S + + +
Sbjct: 361 GNGFEKLKINVSASLCGESQSKDLEIFELLSPGQSYTHSRSESVCSVVSSVDYVPSVT-H 419
Query: 417 EKSSELSGEIISECPAASPSRSDEVTTTPYVKKLIEDLNSTSNEIQASAAAELRLLAKHN 476
E S L S E++ P KK +E N+ ++E A+ E + H+
Sbjct: 420 ETESILGNH----------QSSSEMS--P--KKNLESSNNVNHEHSAAKTYECSV---HD 462
Query: 477 MENRMIIGNCGAIPPLLSLLYSEAQL-TQEHAVTALLNLSINDENKAMIAEAGAIEPLIH 535
+++ + I + L ++ T A L ++ + EN+ I GAI PL+
Sbjct: 463 LDDSGTMTTSHTIKLVEDLKSGSNKVKTAAAAEIRHLTIN-SIENRVHIGRCGAITPLLS 521
Query: 536 VLKSGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFN 595
+L S +E++ AL +LS+ E KA I GA++ LV +L +G R ++++A +LF+
Sbjct: 522 LLYSEEKLTQEHAVTALLNLSISELNKAMIVEVGAIEPLVHVLNTGNDRAKENSAASLFS 581
Query: 596 LSIFHENKARIIQAGA-VKHLVDLMDPST--GMVDKAVALLANLSTVGEGRLAIAREGGI 652
LS+ N+ RI Q+ A ++ LV+L+ T G D A AL NLS + + I + +
Sbjct: 582 LSVLQVNRERIGQSNAAIQALVNLLGKGTFRGKKDAASALF-NLSITHDNKARIVQAKAV 640
Query: 653 PSLVEVVESGSQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKA 712
LVE+++ + + A ++L L +V +EG +P LV G+ R KE A
Sbjct: 641 KYLVELLDPDLEM-VDKAVALLANLSAVGEGRQAIV-REGGIPLLVETVDLGSQRGKENA 698
Query: 713 QQLL 716
+L
Sbjct: 699 ASVL 702
|
|
| TAIR|locus:2082682 PUB14 "plant U-box 14" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 642 (231.1 bits), Expect = 3.0e-93, Sum P(2) = 3.0e-93
Identities = 146/291 (50%), Positives = 196/291 (67%)
Query: 436 SRSDEVTTTPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSL 495
S S + T +V L+E L + + E Q +AA ELRLLAK N++NR+ I GAIP L+ L
Sbjct: 337 SSSSDCDRT-FVLSLLEKLANGTTEQQRAAAGELRLLAKRNVDNRVCIAEAGAIPLLVEL 395
Query: 496 LYSEAQLTQEHAVTALLNLSINDENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSL 555
L S TQEH+VTALLNLSIN+ NK I +AGAI ++ VLK+G+ A+EN+AA LFSL
Sbjct: 396 LSSPDPRTQEHSVTALLNLSINEGNKGAIVDAGAITDIVEVLKNGSMEARENAAATLFSL 455
Query: 556 SVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFHENKARIIQAGAVKHL 615
SV++E K IG +GA++AL+ LL GT RG+KDAATA+FNL I+ NK+R ++ G V L
Sbjct: 456 SVIDENKVAIGAAGAIQALISLLEEGTRRGKKDAATAIFNLCIYQGNKSRAVKGGIVDPL 515
Query: 616 VDLM-DPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVESGSQRGKENAASIL 674
L+ D GMVD+A+A+LA LST EG+ AIA IP LVE++ +GS R +ENAA+IL
Sbjct: 516 TRLLKDAGGGMVDEALAILAILSTNQEGKTAIAEAESIPVLVEIIRTGSPRNRENAAAIL 575
Query: 675 LQLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFRNQREG 725
LC+ + + + + GA L L+++GT RAK KA LL + Q EG
Sbjct: 576 WYLCIGNIERLNVAREVGADVALKELTENGTDRAKRKAASLLELIQ-QTEG 625
|
|
| TAIR|locus:2075140 PUB13 "plant U-box 13" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 607 (218.7 bits), Expect = 4.2e-91, Sum P(3) = 4.2e-91
Identities = 140/299 (46%), Positives = 186/299 (62%)
Query: 431 PAASPSRSDEVTTTPYVKKLIEDLN---STSN-EIQASAAAELRLLAKHNMENRMIIGNC 486
P++ R ++P IEDL + N E Q SAA E+RLLAK N +NR+ I
Sbjct: 334 PSSLRPRKVSSFSSPAEANKIEDLMWRLAYGNPEDQRSAAGEIRLLAKRNADNRVAIAEA 393
Query: 487 GAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAMIAEAGAIEPLIHVLKSGNGGAKE 546
GAIP L+ LL + QEH+VTALLNLSI + NK I AGAI ++ VLK G+ A+E
Sbjct: 394 GAIPLLVGLLSTPDSRIQEHSVTALLNLSICENNKGAIVSAGAIPGIVQVLKKGSMEARE 453
Query: 547 NSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFHENKARI 606
N+AA LFSLSV++E K IG GA+ LV LL GT RG+KDAATALFNL I+ NK +
Sbjct: 454 NAAATLFSLSVIDENKVTIGALGAIPPLVVLLNEGTQRGKKDAATALFNLCIYQGNKGKA 513
Query: 607 IQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVESGSQR 665
I+AG + L L+ +P +GMVD+A+A+LA LS+ EG+ I +PSLVE + +GS R
Sbjct: 514 IRAGVIPTLTRLLTEPGSGMVDEALAILAILSSHPEGKAIIGSSDAVPSLVEFIRTGSPR 573
Query: 666 GKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFRNQRE 724
+ENAA++L+ LC P+ + G + PL+ L+ +GT R K KA QLL E
Sbjct: 574 NRENAAAVLVHLCSGDPQHLVEAQKLGLMGPLIDLAGNGTDRGKRKAAQLLERISRLAE 632
|
|
| UNIPROTKB|Q5VRH9 PUB12 "U-box domain-containing protein 12" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 609 (219.4 bits), Expect = 3.5e-88, Sum P(2) = 3.5e-88
Identities = 134/278 (48%), Positives = 186/278 (66%)
Query: 450 LIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVT 509
L+ L S + + Q +AA E+RLLAK N+ NR+ I GAIP L++LL S TQEHAVT
Sbjct: 328 LMNRLRSGNQDEQRAAAGEIRLLAKRNVNNRICIAEAGAIPLLVNLLSSSDPRTQEHAVT 387
Query: 510 ALLNLSINDENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRSG 569
ALLNLSI++ NKA I ++ AI ++ VLK+G+ +EN+AA LFSLSV++E K IG +G
Sbjct: 388 ALLNLSIHENNKASIVDSHAIPKIVEVLKTGSMETRENAAATLFSLSVVDENKVTIGAAG 447
Query: 570 AVKALVDLLGSGTLRGRKDAATALFNLSIFHENKARIIQAGAVKHLVD-LMDPSTGMVDK 628
A+ L++LL G+ RG+KDAATA+FNL I+ NK R ++AG V HL++ L+DP+ GM+D+
Sbjct: 448 AIPPLINLLCDGSPRGKKDAATAIFNLCIYQGNKVRAVKAGIVIHLMNFLVDPTGGMIDE 507
Query: 629 AVALLANLSTVGEGRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCLHSPKFCTLV 688
A++LL+ L+ EG++ IAR IP LVEV+++GS R +ENAA+IL LC +
Sbjct: 508 ALSLLSILAGNPEGKIVIARSEPIPPLVEVIKTGSPRNRENAAAILWLLCSADTEQTLAA 567
Query: 689 LQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFRNQREGS 726
G L LS++GT RAK KA +L E S
Sbjct: 568 KAAGVEDALKELSETGTDRAKRKASSILELMHQANEDS 605
|
|
| UNIPROTKB|Q0IMG9 SPL11 "E3 ubiquitin-protein ligase SPL11" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 621 (223.7 bits), Expect = 1.5e-85, Sum P(2) = 1.5e-85
Identities = 142/273 (52%), Positives = 185/273 (67%)
Query: 447 VKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEH 506
+ L+ L S E Q SAAAELRLLAK N NR+ I GAIP LLSLL S TQEH
Sbjct: 369 IDALLSKLCSPDTEEQRSAAAELRLLAKRNANNRICIAEAGAIPLLLSLLSSSDLRTQEH 428
Query: 507 AVTALLNLSINDENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIG 566
AVTALLNLSI+++NKA I +GA+ ++HVLK+G+ A+EN+AA LFSLSV++EYK IG
Sbjct: 429 AVTALLNLSIHEDNKASIISSGAVPSIVHVLKNGSMEARENAAATLFSLSVIDEYKVTIG 488
Query: 567 RSGAVKALVDLLGSGTLRGRKDAATALFNLSIFHENKARIIQAGAVKHLVDLMDPSTG-M 625
GA+ ALV LLG G+ RG+KDAA ALFNL I+ NK R I+AG V ++ L+ TG +
Sbjct: 489 GMGAIPALVVLLGEGSQRGKKDAAAALFNLCIYQGNKGRAIRAGLVPLIMGLVTNPTGAL 548
Query: 626 VDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCLHSPKFC 685
+D+A+A+L+ LS+ EG+ AI +P LVE++ SG+ R +ENAA+++L LC
Sbjct: 549 MDEAMAILSILSSHPEGKAAIGAAEPVPVLVEMIGSGTPRNRENAAAVMLHLCSGEHHLV 608
Query: 686 TLV-LQE-GAVPPLVGLSQSGTPRAKEKAQQLL 716
L QE G + PL L+ +GT R K KA QLL
Sbjct: 609 HLARAQECGIMVPLRELALNGTDRGKRKAVQLL 641
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| TAIR|locus:2162276 PUB15 "Plant U-Box 15" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 573 (206.8 bits), Expect = 5.7e-84, Sum P(2) = 5.7e-84
Identities = 138/306 (45%), Positives = 199/306 (65%)
Query: 413 CSKNEKSSELSGEIISECPAASPSRSDEVTTTPYVKKLIEDLNSTSNEIQASAAAELRLL 472
C KN + ++ + +S P + + DEV+ L+E L+S+ E Q + ++RLL
Sbjct: 357 CEKN--NFKIPEKEVS--PDSQNEQKDEVSL------LVEALSSSQLEEQRRSVKQMRLL 406
Query: 473 AKHNMENRMIIGNCGAIPPLLSLL-YSEAQLTQEHAVTALLNLSINDENKAMIAEAGAIE 531
A+ N ENR++I N GAIP L+ LL Y ++ + QE+AVT LLNLSI++ NK +I+ GAI
Sbjct: 407 ARENPENRVLIANAGAIPLLVQLLSYPDSGI-QENAVTTLLNLSIDEVNKKLISNEGAIP 465
Query: 532 PLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAAT 591
+I +L++GN A+ENSAAALFSLS+L+E K IG S + LVDLL GTLRG+KDA T
Sbjct: 466 NIIEILENGNREARENSAAALFSLSMLDENKVTIGLSNGIPPLVDLLQHGTLRGKKDALT 525
Query: 592 ALFNLSIFHENKARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGEGRLAIAREG 650
ALFNLS+ NK R I AG V+ L++L+ D + GM+D+A+++L L++ EGR AI +
Sbjct: 526 ALFNLSLNSANKGRAIDAGIVQPLLNLLKDKNLGMIDEALSILLLLASHPEGRQAIGQLS 585
Query: 651 GIPSLVEVVESGSQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKE 710
I +LVE + G+ + KE A S+LL+L ++ F LQ G LV ++ SGT RA+
Sbjct: 586 FIETLVEFIRQGTPKNKECATSVLLELGSNNSSFILAALQFGVYEYLVEITTSGTNRAQR 645
Query: 711 KAQQLL 716
KA L+
Sbjct: 646 KANALI 651
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| TAIR|locus:2017719 AT1G23030 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 584 (210.6 bits), Expect = 9.5e-84, Sum P(3) = 9.5e-84
Identities = 126/276 (45%), Positives = 187/276 (67%)
Query: 447 VKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEH 506
++ L++ L+S S E + +A +E+R L+K + +NR++I GAIP L++LL SE TQE+
Sbjct: 333 IRALVQRLSSRSTEDRRNAVSEIRSLSKRSTDNRILIAEAGAIPVLVNLLTSEDVATQEN 392
Query: 507 AVTALLNLSINDENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIG 566
A+T +LNLSI + NK +I AGA+ ++ VL++G A+EN+AA LFSLS+ +E K IG
Sbjct: 393 AITCVLNLSIYENNKELIMFAGAVTSIVQVLRAGTMEARENAAATLFSLSLADENKIIIG 452
Query: 567 RSGAVKALVDLLGSGTLRGRKDAATALFNLSIFHENKARIIQAGAVKHLVDLMDPSTG-- 624
SGA+ ALVDLL +GT RG+KDAATALFNL I+H NK R ++AG V LV ++ ST
Sbjct: 453 GSGAIPALVDLLENGTPRGKKDAATALFNLCIYHGNKGRAVRAGIVTALVKMLSDSTRHR 512
Query: 625 MVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCLHSPKF 684
MVD+A+ +L+ L+ + + AI + +P+L+ ++++ R +ENAA+ILL LC +
Sbjct: 513 MVDEALTILSVLANNQDAKSAIVKANTLPALIGILQTDQTRNRENAAAILLSLCKRDTEK 572
Query: 685 CTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFR 720
+ + GAV PL+ LS++GT R K KA LL R
Sbjct: 573 LITIGRLGAVVPLMDLSKNGTERGKRKAISLLELLR 608
|
|
| TAIR|locus:2013990 AT1G71020 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 558 (201.5 bits), Expect = 8.2e-81, Sum P(3) = 8.2e-81
Identities = 126/277 (45%), Positives = 183/277 (66%)
Query: 447 VKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQL-TQE 505
++ L+ L+S S E + +A +E+R L+K + +NR++I GAIP L+ LL S+ TQE
Sbjct: 343 IRALVCKLSSQSIEDRRTAVSEIRSLSKRSTDNRILIAEAGAIPVLVKLLTSDGDTETQE 402
Query: 506 HAVTALLNLSINDENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKI 565
+AVT +LNLSI + NK +I AGA+ ++ VL++G+ A+EN+AA LFSLS+ +E K I
Sbjct: 403 NAVTCILNLSIYEHNKELIMLAGAVTSIVLVLRAGSMEARENAAATLFSLSLADENKIII 462
Query: 566 GRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFHENKARIIQAGAVKHLVDLMDPSTG- 624
G SGA+ ALVDLL G++RG+KDAATALFNL I+ NK R ++AG VK LV ++ S+
Sbjct: 463 GASGAIMALVDLLQYGSVRGKKDAATALFNLCIYQGNKGRAVRAGIVKPLVKMLTDSSSE 522
Query: 625 -MVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCLHSPK 683
M D+A+ +L+ L++ + AI R IP L++ ++ R +ENAA+ILL LC +
Sbjct: 523 RMADEALTILSVLASNQVAKTAILRANAIPPLIDCLQKDQPRNRENAAAILLCLCKRDTE 582
Query: 684 FCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFR 720
+ + GAV PL+ LS+ GT RAK KA LL R
Sbjct: 583 KLISIGRLGAVVPLMELSRDGTERAKRKANSLLELLR 619
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q8GWV5 | PUB3_ARATH | 6, ., 3, ., 2, ., - | 0.5703 | 0.9986 | 0.9618 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 6.3.2 | 0.691 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | GSVIVG00028576001 | SubName- Full=Chromosome chr7 scaffold_44, whole genome shotgun sequence; (731 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 732 | |||
| pfam04564 | 73 | pfam04564, U-box, U-box domain | 6e-25 | |
| smart00504 | 63 | smart00504, Ubox, Modified RING finger domain | 7e-25 | |
| PLN03200 | 2102 | PLN03200, PLN03200, cellulose synthase-interactive | 3e-17 | |
| cd00020 | 120 | cd00020, ARM, Armadillo/beta-catenin-like repeats | 2e-14 | |
| cd00020 | 120 | cd00020, ARM, Armadillo/beta-catenin-like repeats | 2e-14 | |
| cd00020 | 120 | cd00020, ARM, Armadillo/beta-catenin-like repeats | 3e-14 | |
| cd00020 | 120 | cd00020, ARM, Armadillo/beta-catenin-like repeats | 4e-14 | |
| PLN03200 | 2102 | PLN03200, PLN03200, cellulose synthase-interactive | 8e-12 | |
| PLN03200 | 2102 | PLN03200, PLN03200, cellulose synthase-interactive | 1e-11 | |
| PLN03200 | 2102 | PLN03200, PLN03200, cellulose synthase-interactive | 3e-11 | |
| PLN03200 | 2102 | PLN03200, PLN03200, cellulose synthase-interactive | 5e-11 | |
| PLN03200 | 2102 | PLN03200, PLN03200, cellulose synthase-interactive | 2e-08 | |
| PLN03200 | 2102 | PLN03200, PLN03200, cellulose synthase-interactive | 2e-07 | |
| pfam00514 | 41 | pfam00514, Arm, Armadillo/beta-catenin-like repeat | 6e-07 | |
| COG5064 | 526 | COG5064, SRP1, Karyopherin (importin) alpha [Intra | 3e-06 | |
| PLN03200 | 2102 | PLN03200, PLN03200, cellulose synthase-interactive | 1e-05 | |
| pfam00514 | 41 | pfam00514, Arm, Armadillo/beta-catenin-like repeat | 5e-05 | |
| cd00020 | 120 | cd00020, ARM, Armadillo/beta-catenin-like repeats | 8e-05 | |
| pfam00514 | 41 | pfam00514, Arm, Armadillo/beta-catenin-like repeat | 4e-04 | |
| smart00185 | 41 | smart00185, ARM, Armadillo/beta-catenin-like repea | 8e-04 | |
| PLN03200 | 2102 | PLN03200, PLN03200, cellulose synthase-interactive | 9e-04 | |
| PLN03200 | 2102 | PLN03200, PLN03200, cellulose synthase-interactive | 0.001 | |
| COG5064 | 526 | COG5064, SRP1, Karyopherin (importin) alpha [Intra | 0.001 |
| >gnl|CDD|203049 pfam04564, U-box, U-box domain | Back alignment and domain information |
|---|
Score = 98.1 bits (245), Expect = 6e-25
Identities = 34/71 (47%), Positives = 43/71 (60%)
Query: 236 IPPYFRCPLSLELMIDPVIVASGQTYERVFIQKWLDHGLNICPKTRQTLAHTNLIPNYTV 295
IP F P++LELM DPVI+ SG TY+R I++ L P TR+ L H LIPN +
Sbjct: 1 IPDEFLDPITLELMKDPVILPSGITYDRSTIERHLLSVDPTDPFTREPLTHDQLIPNLEL 60
Query: 296 KAMIENWCEEN 306
K I+ W EEN
Sbjct: 61 KEKIDAWLEEN 71
|
This domain is related to the Ring finger pfam00097 but lacks the zinc binding residues. Length = 73 |
| >gnl|CDD|128780 smart00504, Ubox, Modified RING finger domain | Back alignment and domain information |
|---|
Score = 97.7 bits (244), Expect = 7e-25
Identities = 34/64 (53%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Query: 239 YFRCPLSLELMIDPVIVASGQTYERVFIQKWLDHGLNICPKTRQTLAHTNLIPNYTVKAM 298
F CP+SLE+M DPVI+ SGQTYER I+KWL P T Q L H +LIPN +K+
Sbjct: 1 EFLCPISLEVMKDPVILPSGQTYERSAIEKWLL-SHGTDPVTGQPLTHEDLIPNLALKSA 59
Query: 299 IENW 302
I+ W
Sbjct: 60 IQEW 63
|
Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination. Length = 63 |
| >gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Score = 86.7 bits (215), Expect = 3e-17
Identities = 92/321 (28%), Positives = 140/321 (43%), Gaps = 53/321 (16%)
Query: 449 KLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSE--------- 499
KL+ N S ++A AA L L+ + E + I + G IP L++ +
Sbjct: 238 KLLGQGNEVS--VRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEF 295
Query: 500 AQLTQEHAVTALLN--------------LSINDENKAMIAEA-GAIEPLIHVLKSGNGGA 544
AQ QE+A+ AL N LS + + A IA+ GA+ + V S
Sbjct: 296 AQALQENAMGALANICGGMSALILYLGELSESPRSPAPIADTLGALAYALMVFDSSAEST 355
Query: 545 ------------------------KENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGS 580
+E AL SL K+ + A K LV L+
Sbjct: 356 RAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITM 415
Query: 581 GTLRGRKDAATALFNLSIFHENKARIIQA-GAVKHLVDLMD-PSTGMVDKAVALLANLST 638
T +++ AL +L + V+ L+ L+ S + AVALLA L+
Sbjct: 416 ATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTD 475
Query: 639 -VGEGRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPL 697
V E + AI GGIP LV+++E+GSQ+ KE++A++L LC HS V GAVP L
Sbjct: 476 EVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPAL 535
Query: 698 VGLSQSGTPRAKEKAQQLLSH 718
+ L ++G P+ +E A + L+
Sbjct: 536 LWLLKNGGPKGQEIAAKTLTK 556
|
Length = 2102 |
| >gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Score = 69.7 bits (171), Expect = 2e-14
Identities = 35/111 (31%), Positives = 62/111 (55%), Gaps = 1/111 (0%)
Query: 447 VKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEH 506
+ L+ L+S+ +Q AA L L+ N +N + G +P L+ LL SE + +
Sbjct: 9 LPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKA 68
Query: 507 AVTALLNLSI-NDENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLS 556
A+ AL NL+ ++NK ++ EAG + L+++L S N ++N+ AL +L+
Sbjct: 69 ALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119
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An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120 |
| >gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Score = 69.7 bits (171), Expect = 2e-14
Identities = 38/120 (31%), Positives = 61/120 (50%), Gaps = 3/120 (2%)
Query: 522 AMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSV-LEEYKAKIGRSGAVKALVDLLGS 580
+ +AG + L+ +L S + + +A AL +LS + + +G + ALV LL S
Sbjct: 1 EAVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKS 60
Query: 581 GTLRGRKDAATALFNLSIFHENKARII-QAGAVKHLVDLMDPSTGMVDK-AVALLANLST 638
K A AL NL+ E+ I+ +AG V LV+L+D S + K A L+NL++
Sbjct: 61 EDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120 |
| >gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Score = 69.3 bits (170), Expect = 3e-14
Identities = 38/119 (31%), Positives = 63/119 (52%), Gaps = 3/119 (2%)
Query: 563 AKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFH-ENKARIIQAGAVKHLVDLM-D 620
+ ++G + ALV LL S +++AA AL NLS + +N +++AG + LV L+
Sbjct: 1 EAVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKS 60
Query: 621 PSTGMVDKAVALLANLSTVGEGRLAIARE-GGIPSLVEVVESGSQRGKENAASILLQLC 678
+V A+ L NL+ E I E GG+P LV +++S ++ ++NA L L
Sbjct: 61 EDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120 |
| >gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Score = 69.3 bits (170), Expect = 4e-14
Identities = 40/117 (34%), Positives = 62/117 (52%), Gaps = 2/117 (1%)
Query: 483 IGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSIN-DENKAMIAEAGAIEPLIHVLKSGN 541
+ G +P L+SLL S + Q A AL NLS ++N + EAG + L+ +LKS +
Sbjct: 3 VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSED 62
Query: 542 GGAKENSAAALFSLS-VLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLS 597
+ + AL +L+ E+ K + +G V LV+LL S +K+A AL NL+
Sbjct: 63 EEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120 |
| >gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Score = 69.0 bits (169), Expect = 8e-12
Identities = 79/302 (26%), Positives = 131/302 (43%), Gaps = 49/302 (16%)
Query: 457 TSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSI 516
+ ++Q L L +G + L+SLL ++ QE+AV L L+
Sbjct: 416 ATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTD 475
Query: 517 -NDENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSL-SVLEEYKAKIGRSGAVKAL 574
DE+K I AG I PL+ +L++G+ AKE+SA L++L E+ +A + +GAV AL
Sbjct: 476 EVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPAL 535
Query: 575 VDLLGSGTLRGRKDAATALFNLSIFHENKARIIQAGAVKHLVDLMDPSTGMVDKAVALLA 634
+ LL +G +G++ AA L L + + A I Q A+ L DL + ++D +L+
Sbjct: 536 LWLLKNGGPKGQEIAAKTLTKL-VRTADAATISQLTAL-LLGDLPESKVHVLDVLGHVLS 593
Query: 635 NLSTVGEGRLAIAREGGIPSLVEVVESGSQRGKENAASILLQ-------LCLHSPKF--- 684
S R A + +L++++ S + +E AAS+L LC S
Sbjct: 594 VASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLC-ESLATDEI 652
Query: 685 ---CTLVLQ-------------------------------EGAVPPLVGLSQSGTPRAKE 710
C +L E A+ PL+ L++S + E
Sbjct: 653 INPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAE 712
Query: 711 KA 712
+A
Sbjct: 713 QA 714
|
Length = 2102 |
| >gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Score = 68.2 bits (167), Expect = 1e-11
Identities = 68/220 (30%), Positives = 102/220 (46%), Gaps = 27/220 (12%)
Query: 504 QEHAVTALLNLSINDEN--KAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEY 561
+E LL L+ E KA+ + + A+ L+ +L+SG GAK N+AA L L E+
Sbjct: 32 KELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRSGTLGAKVNAAAVLGVLCKEEDL 91
Query: 562 KAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLS-----------IFHENKARIIQAG 610
+ K+ G + L+ LL SG+ +K AA A++ +S IF G
Sbjct: 92 RVKVLLGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIF-------STEG 144
Query: 611 AVKHLVDLMDPSTGMVDKAV-----ALLANLSTVGEGRLAIARE-GGIPSLVEVVESGSQ 664
V L D + P DK V L NL +G + E GG+ LV+++ SG+
Sbjct: 145 VVPSLWDQLQPG-NKQDKVVEGLLTGALRNLCGSTDGFWSATLEAGGVDILVKLLSSGNS 203
Query: 665 RGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSG 704
+ NAAS+L +L + + VL GAV L+ L G
Sbjct: 204 DAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQG 243
|
Length = 2102 |
| >gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Score = 66.7 bits (163), Expect = 3e-11
Identities = 69/246 (28%), Positives = 105/246 (42%), Gaps = 17/246 (6%)
Query: 450 LIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVT 509
LI+ L+S+ E Q AA+ L + + + I P + LL + + +
Sbjct: 614 LIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSAR 673
Query: 510 AL--LNLSINDENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGR 567
AL L+ SI + K A AI+PLI + KS + E + AL +L E A+
Sbjct: 674 ALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALA 733
Query: 568 SGAVKALVDLLGSGTLRGRKDAATALFNL-SIFHEN---KARIIQAGAVKHLVDLMDP-- 621
+ L +L GTL G+++AA AL L F + K + G V LVDL++
Sbjct: 734 EDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTD 793
Query: 622 ----STGMVDKAVALLANLST-VGEGRLAIAREGGIPS----LVEVVESGSQRGKENAAS 672
+T +A+ALLA A +PS LV + G ++ A
Sbjct: 794 LDSSATSEALEALALLARTKGGANFSHPPWAVLAEVPSSLEPLVRCLAEGHPLVQDKAIE 853
Query: 673 ILLQLC 678
IL +LC
Sbjct: 854 ILSRLC 859
|
Length = 2102 |
| >gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Score = 66.3 bits (162), Expect = 5e-11
Identities = 70/285 (24%), Positives = 119/285 (41%), Gaps = 55/285 (19%)
Query: 447 VKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEH 506
V+ LI L +S + Q A A L +L E++ I G IPPL+ LL + +Q +E
Sbjct: 448 VQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKED 507
Query: 507 AVTALLNLSINDEN-KAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKI 565
+ T L NL + E+ +A + AGA+ L+ +LK+G +E +A L
Sbjct: 508 SATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTL------------- 554
Query: 566 GRSGAVKALVDLLGSGTLRGRKDAAT-----ALFNLSIFHENKARIIQAGAVKHLVDLMD 620
L DAAT AL L E+K ++ + H++
Sbjct: 555 ---------------TKLVRTADAATISQLTALL-LGDLPESKVHVLD--VLGHVL---- 592
Query: 621 PSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCLH 680
+VA L +L G A + +L++++ S + +E AAS+L +
Sbjct: 593 --------SVASLEDLVREGS-----AANDALRTLIQLLSSSKEETQEKAASVLADIFSS 639
Query: 681 SPKFCTLVLQEGAVPPLVGLSQSGTPR-AKEKAQQLLSHFRNQRE 724
C + + + P + L + T A + A+ L + R+ +E
Sbjct: 640 RQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKE 684
|
Length = 2102 |
| >gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 2e-08
Identities = 71/280 (25%), Positives = 107/280 (38%), Gaps = 52/280 (18%)
Query: 450 LIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVT 509
L++ L + S + + +A L L H+ + R + + GA+P LL LL + QE A
Sbjct: 493 LVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAK 552
Query: 510 ALLNL-------SIND----------ENKAMIAEA---------------------GAIE 531
L L +I+ E+K + + A+
Sbjct: 553 TLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALR 612
Query: 532 PLIHVLKSGNGGAKENSA---AALFSLSVLEEYKAKIGRSGAVKAL---VDLLGSGTLRG 585
LI +L S +E +A A +FS + + + + LL + T
Sbjct: 613 TLIQLLSSSKEETQEKAASVLADIFSSR-----QDLCESLATDEIINPCIKLLTNNTEAV 667
Query: 586 RKDAATALFNL--SIFHENKARIIQAGAVKHLVDLMDPSTGMV-DKAVALLANLSTVGEG 642
+A AL L SI K A+K L+ L S+ V ++AV LANL + E
Sbjct: 668 ATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEV 727
Query: 643 RLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCLHSP 682
E I L V+ G+ GK NAA L QL H P
Sbjct: 728 AAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFP 767
|
Length = 2102 |
| >gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 2e-07
Identities = 69/238 (28%), Positives = 110/238 (46%), Gaps = 7/238 (2%)
Query: 469 LRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLN-LSINDENKAMIAEA 527
L LA+ + N++ + GA+ L L Q + E A + LL L + E + +
Sbjct: 1172 LTQLAEGSDVNKLAMAEAGALDALTKYLSLGPQDSTEEAASELLRILFSSPELRRHESAF 1231
Query: 528 GAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRK 587
GA+ L+ VL+ G+ A+ ++A AL L E + AV+ LV++L +G+ +
Sbjct: 1232 GAVNQLVAVLRLGSRSARYSAARALQELFSAEHIRDSELARQAVQPLVEMLNTGSESEQH 1291
Query: 588 DAATALFNLSIFHENKARII---QAGAVKHLVDLM--DPSTGMVDKAVALLANLSTVGEG 642
A AL LS + +KA I + A+++L ++ D S + + A L L T
Sbjct: 1292 AAIGALIKLSSGNPSKALAIADVEGNALENLCKILSSDSSLELKEDAAELCRVLFTNTRI 1351
Query: 643 RLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGL 700
R A I L+ ++ S S +E L +L L + LV GAV PLVGL
Sbjct: 1352 RSTPAAARCIEPLISLLVSESSTAQEAGVCALDRL-LDDEQLAELVAAHGAVVPLVGL 1408
|
Length = 2102 |
| >gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat | Back alignment and domain information |
|---|
Score = 45.9 bits (110), Expect = 6e-07
Identities = 17/38 (44%), Positives = 23/38 (60%)
Query: 478 ENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLS 515
EN+ + GA+PPL+ LL S + QE A AL NL+
Sbjct: 3 ENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNLA 40
|
Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41 |
| >gnl|CDD|227396 COG5064, SRP1, Karyopherin (importin) alpha [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Score = 49.9 bits (119), Expect = 3e-06
Identities = 64/283 (22%), Positives = 120/283 (42%), Gaps = 10/283 (3%)
Query: 439 DEVTTTPYVKKLIEDLNSTSNEI-QASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLY 497
V V + +E ++ ++ Q AA L +A + ++ + GA+P + LL
Sbjct: 108 QPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLS 167
Query: 498 SEAQLTQEHAVTALLNLSINDEN-KAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLS 556
S +E AV AL N++ + E + + + GA+EPL+ +L S + A ++LS
Sbjct: 168 STEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLS-SAIHISMLRNATWTLS 226
Query: 557 VLEEYK----AKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLS-IFHENKARIIQAGA 611
L K S A+ L L+ S DA A+ LS +E ++ G
Sbjct: 227 NLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGI 286
Query: 612 VKHLVD-LMDPSTGMVDKAVALLANLSTVGEGRL-AIAREGGIPSLVEVVESGSQRGKEN 669
LV+ L S + A+ + N+ T + + I G + + ++ S + ++
Sbjct: 287 PGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKE 346
Query: 670 AASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKA 712
A + + + + V+ +PPL+ L S + K++A
Sbjct: 347 ACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEA 389
|
Length = 526 |
| >gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 1e-05
Identities = 62/216 (28%), Positives = 96/216 (44%), Gaps = 27/216 (12%)
Query: 517 NDENKAMIAEAGAIEPLIHVLKSGNGGAKENSAA----ALFSLSVLEEYKAKIGRSGAVK 572
+D NK +AEAGA++ L L G + E +A+ LFS L +++ GAV
Sbjct: 1179 SDVNKLAMAEAGALDALTKYLSLGPQDSTEEAASELLRILFSSPELRRHESAF---GAVN 1235
Query: 573 ALVDLLGSGTLRGRKDAATALFNLSIFHENKARIIQAG--AVKHLVDLMDPSTGMVDKAV 630
LV +L G+ R AA AL L F R + AV+ LV+++ +TG +
Sbjct: 1236 QLVAVLRLGSRSARYSAARALQEL--FSAEHIRDSELARQAVQPLVEML--NTGSESEQH 1291
Query: 631 ALLANLSTVGEG----RLAIAREGGIP--SLVEVVESGSQRG-KENAASILLQLC---LH 680
A + L + G LAIA G +L +++ S S KE+AA +LC
Sbjct: 1292 AAIGALIKLSSGNPSKALAIADVEGNALENLCKILSSDSSLELKEDAA----ELCRVLFT 1347
Query: 681 SPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLL 716
+ + + + PL+ L S + A+E L
Sbjct: 1348 NTRIRSTPAAARCIEPLISLLVSESSTAQEAGVCAL 1383
|
Length = 2102 |
| >gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 5e-05
Identities = 16/40 (40%), Positives = 26/40 (65%)
Query: 517 NDENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLS 556
+ ENK + EAGA+ PL+ +L S + +E +A AL +L+
Sbjct: 1 SPENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNLA 40
|
Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41 |
| >gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 8e-05
Identities = 18/64 (28%), Positives = 31/64 (48%)
Query: 644 LAIAREGGIPSLVEVVESGSQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQS 703
A+ + GG+P+LV ++ S + + AA L L + V++ G +P LV L +S
Sbjct: 1 EAVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKS 60
Query: 704 GTPR 707
Sbjct: 61 EDEE 64
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120 |
| >gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat | Back alignment and domain information |
|---|
Score = 37.8 bits (89), Expect = 4e-04
Identities = 16/39 (41%), Positives = 22/39 (56%)
Query: 559 EEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLS 597
E K + +GAV LV LL S +++AA AL NL+
Sbjct: 2 PENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNLA 40
|
Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41 |
| >gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Score = 37.0 bits (87), Expect = 8e-04
Identities = 15/40 (37%), Positives = 23/40 (57%)
Query: 476 NMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLS 515
+ EN+ + + G +P L+ LL SE + + A AL NLS
Sbjct: 1 DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40
|
Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41 |
| >gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 9e-04
Identities = 66/244 (27%), Positives = 105/244 (43%), Gaps = 31/244 (12%)
Query: 487 GAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAMIAEA-GAIEPLIHVLKSGNGGAK 545
I PL+SLL SE+ QE V AL L ++DE A + A GA+ PL+ ++ N
Sbjct: 1359 RCIEPLISLLVSESSTAQEAGVCALDRL-LDDEQLAELVAAHGAVVPLVGLVVGTNYVLH 1417
Query: 546 ENSAAALFSLS------VLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFN--LS 597
E + +AL L L+ KA G ++ ++D+L D+ + L
Sbjct: 1418 EAAISALIKLGKDRPPCKLDMVKA-----GIIERVLDILPEAP-----DSLCSAIAELLR 1467
Query: 598 IFHENKARIIQAGAVKHLVD-----LMDPSTGMVDKAVAL--LANLSTVGEGR--LAIAR 648
I N + I + + +V+ L P G + AL L N+ + L +
Sbjct: 1468 IL-TNNSSIAKGQSAAKVVEPLFLLLTRPDLGTWGQHSALQALVNILEKPQCLASLTLTP 1526
Query: 649 EGGIPSLVEVVESGSQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRA 708
I L+ ++ES SQ + A+ LL L F + + AV PLV L+ G
Sbjct: 1527 SQAIEPLIPLLESPSQ-AVQQLAAELLSHLLAEEHFQQDITTQNAVVPLVRLAGIGILSL 1585
Query: 709 KEKA 712
+++A
Sbjct: 1586 QQRA 1589
|
Length = 2102 |
| >gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 0.001
Identities = 76/288 (26%), Positives = 126/288 (43%), Gaps = 22/288 (7%)
Query: 447 VKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNC--GAIPPLLSLLYSEAQL-T 503
V+ L+E LN+ S Q +A L L+ N + I + A+ L +L S++ L
Sbjct: 1275 VQPLVEMLNTGSESEQHAAIGALIKLSSGNPSKALAIADVEGNALENLCKILSSDSSLEL 1334
Query: 504 QEHAVTALLNLSINDENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKA 563
+E A L N ++ A A IEPLI +L S + A+E AL L E+
Sbjct: 1335 KEDAAELCRVLFTNTRIRSTPAAARCIEPLISLLVSESSTAQEAGVCALDRLLDDEQLAE 1394
Query: 564 KIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFHEN-KARIIQAGAVKHLVDLMDPS 622
+ GAV LV L+ + A +AL L K +++AG ++ ++D++ +
Sbjct: 1395 LVAAHGAVVPLVGLVVGTNYVLHEAAISALIKLGKDRPPCKLDMVKAGIIERVLDILPEA 1454
Query: 623 TGMVDKAVA-LLANLSTVGEGRLAIAREGGIPSLVEVVE---------SGSQRGKENAAS 672
+ A+A LL L+ +IA+ S +VVE G+ +A
Sbjct: 1455 PDSLCSAIAELLRILTNNS----SIAKG---QSAAKVVEPLFLLLTRPDLGTWGQHSALQ 1507
Query: 673 ILLQLCLHSPKFCTLVLQEG-AVPPLVGLSQSGTPRAKEKAQQLLSHF 719
L+ + +L L A+ PL+ L +S + ++ A +LLSH
Sbjct: 1508 ALVNILEKPQCLASLTLTPSQAIEPLIPLLESPSQAVQQLAAELLSHL 1555
|
Length = 2102 |
| >gnl|CDD|227396 COG5064, SRP1, Karyopherin (importin) alpha [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 0.001
Identities = 52/216 (24%), Positives = 97/216 (44%), Gaps = 14/216 (6%)
Query: 435 PSRSDEVTTTPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLS 494
P S+ P + KLI S E+ A + L+ E + + G L+
Sbjct: 236 PDWSNISQALPILAKLI---YSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVE 292
Query: 495 LLYSEAQLTQEHAVTALLNL-SINDENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALF 553
LL E+ Q A+ ++ N+ + +D+ +I GA++ +L S ++ + +
Sbjct: 293 LLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTIS 352
Query: 554 SLSV--LEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFHENKARIIQ--- 608
+++ E+ +A I + + L+ LL S + +K+A A+ N + N+ II+
Sbjct: 353 NITAGNTEQIQAVI-DANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLV 411
Query: 609 -AGAVKHLVDLMDPSTGMVDKAVAL--LANLSTVGE 641
G +K L DL+D + + VAL + N+ VGE
Sbjct: 412 SQGFIKPLCDLLDVVDNKIIE-VALDAIENILKVGE 446
|
Length = 526 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 732 | |||
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 99.95 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 99.94 | |
| KOG0166 | 514 | consensus Karyopherin (importin) alpha [Intracellu | 99.94 | |
| KOG4224 | 550 | consensus Armadillo repeat protein VAC8 required f | 99.93 | |
| KOG4224 | 550 | consensus Armadillo repeat protein VAC8 required f | 99.92 | |
| KOG0166 | 514 | consensus Karyopherin (importin) alpha [Intracellu | 99.9 | |
| COG5064 | 526 | SRP1 Karyopherin (importin) alpha [Intracellular t | 99.9 | |
| PF04564 | 73 | U-box: U-box domain; InterPro: IPR003613 Quality c | 99.88 | |
| COG5064 | 526 | SRP1 Karyopherin (importin) alpha [Intracellular t | 99.86 | |
| PF05804 | 708 | KAP: Kinesin-associated protein (KAP) | 99.75 | |
| PF05804 | 708 | KAP: Kinesin-associated protein (KAP) | 99.74 | |
| smart00504 | 63 | Ubox Modified RING finger domain. Modified RING fi | 99.69 | |
| KOG2122 | 2195 | consensus Beta-catenin-binding protein APC, contai | 99.67 | |
| KOG1048 | 717 | consensus Neural adherens junction protein Plakoph | 99.63 | |
| KOG4199 | 461 | consensus Uncharacterized conserved protein [Funct | 99.61 | |
| KOG4199 | 461 | consensus Uncharacterized conserved protein [Funct | 99.57 | |
| KOG1048 | 717 | consensus Neural adherens junction protein Plakoph | 99.53 | |
| PF04826 | 254 | Arm_2: Armadillo-like; InterPro: IPR006911 This en | 99.5 | |
| PF04826 | 254 | Arm_2: Armadillo-like; InterPro: IPR006911 This en | 99.38 | |
| PF10508 | 503 | Proteasom_PSMB: Proteasome non-ATPase 26S subunit; | 99.38 | |
| KOG2122 | 2195 | consensus Beta-catenin-binding protein APC, contai | 99.36 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 99.3 | |
| COG5113 | 929 | UFD2 Ubiquitin fusion degradation protein 2 [Postt | 99.22 | |
| KOG2042 | 943 | consensus Ubiquitin fusion degradation protein-2 [ | 99.17 | |
| cd00020 | 120 | ARM Armadillo/beta-catenin-like repeats. An approx | 99.09 | |
| PF15227 | 42 | zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: | 99.07 | |
| cd00020 | 120 | ARM Armadillo/beta-catenin-like repeats. An approx | 99.07 | |
| PLN03208 | 193 | E3 ubiquitin-protein ligase RMA2; Provisional | 99.07 | |
| PF10508 | 503 | Proteasom_PSMB: Proteasome non-ATPase 26S subunit; | 99.06 | |
| KOG1222 | 791 | consensus Kinesin associated protein KAP [Intracel | 99.05 | |
| KOG4500 | 604 | consensus Rho/Rac GTPase guanine nucleotide exchan | 99.04 | |
| cd00256 | 429 | VATPase_H VATPase_H, regulatory vacuolar ATP synth | 99.02 | |
| KOG1222 | 791 | consensus Kinesin associated protein KAP [Intracel | 98.98 | |
| TIGR00599 | 397 | rad18 DNA repair protein rad18. This family is bas | 98.97 | |
| PRK09687 | 280 | putative lyase; Provisional | 98.93 | |
| PF03224 | 312 | V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004 | 98.9 | |
| KOG4500 | 604 | consensus Rho/Rac GTPase guanine nucleotide exchan | 98.88 | |
| PF03224 | 312 | V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004 | 98.86 | |
| PF11789 | 57 | zf-Nse: Zinc-finger of the MIZ type in Nse subunit | 98.84 | |
| KOG0168 | 1051 | consensus Putative ubiquitin fusion degradation pr | 98.83 | |
| PF13923 | 39 | zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); | 98.72 | |
| PRK09687 | 280 | putative lyase; Provisional | 98.63 | |
| PF13445 | 43 | zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A. | 98.58 | |
| KOG0946 | 970 | consensus ER-Golgi vesicle-tethering protein p115 | 98.51 | |
| KOG2160 | 342 | consensus Armadillo/beta-catenin-like repeat-conta | 98.51 | |
| PF00097 | 41 | zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I | 98.47 | |
| KOG2759 | 442 | consensus Vacuolar H+-ATPase V1 sector, subunit H | 98.47 | |
| KOG2973 | 353 | consensus Uncharacterized conserved protein [Funct | 98.45 | |
| KOG0823 | 230 | consensus Predicted E3 ubiquitin ligase [Posttrans | 98.43 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 98.43 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 98.42 | |
| cd00256 | 429 | VATPase_H VATPase_H, regulatory vacuolar ATP synth | 98.41 | |
| KOG2160 | 342 | consensus Armadillo/beta-catenin-like repeat-conta | 98.41 | |
| PF14835 | 65 | zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM | 98.39 | |
| PF13920 | 50 | zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); | 98.37 | |
| KOG0168 | 1051 | consensus Putative ubiquitin fusion degradation pr | 98.36 | |
| PHA02929 | 238 | N1R/p28-like protein; Provisional | 98.35 | |
| KOG0287 | 442 | consensus Postreplication repair protein RAD18 [Re | 98.34 | |
| PF01602 | 526 | Adaptin_N: Adaptin N terminal region; InterPro: IP | 98.32 | |
| PF01602 | 526 | Adaptin_N: Adaptin N terminal region; InterPro: IP | 98.28 | |
| KOG0320 | 187 | consensus Predicted E3 ubiquitin ligase [Posttrans | 98.26 | |
| KOG4646 | 173 | consensus Uncharacterized conserved protein, conta | 98.25 | |
| KOG2177 | 386 | consensus Predicted E3 ubiquitin ligase [Posttrans | 98.23 | |
| cd00162 | 45 | RING RING-finger (Really Interesting New Gene) dom | 98.19 | |
| PF13639 | 44 | zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C | 98.16 | |
| KOG4646 | 173 | consensus Uncharacterized conserved protein, conta | 98.14 | |
| KOG1293 | 678 | consensus Proteins containing armadillo/beta-caten | 98.12 | |
| COG5432 | 391 | RAD18 RING-finger-containing E3 ubiquitin ligase [ | 98.11 | |
| smart00184 | 39 | RING Ring finger. E3 ubiquitin-protein ligase acti | 98.06 | |
| KOG3678 | 832 | consensus SARM protein (with sterile alpha and arm | 98.03 | |
| PF05536 | 543 | Neurochondrin: Neurochondrin | 98.03 | |
| KOG0317 | 293 | consensus Predicted E3 ubiquitin ligase, integral | 98.0 | |
| PF05536 | 543 | Neurochondrin: Neurochondrin | 97.97 | |
| PHA02926 | 242 | zinc finger-like protein; Provisional | 97.96 | |
| KOG2171 | 1075 | consensus Karyopherin (importin) beta 3 [Nuclear s | 97.92 | |
| KOG0946 | 970 | consensus ER-Golgi vesicle-tethering protein p115 | 97.92 | |
| KOG0978 | 698 | consensus E3 ubiquitin ligase involved in syntaxin | 97.91 | |
| TIGR00570 | 309 | cdk7 CDK-activating kinase assembly factor MAT1. A | 97.9 | |
| KOG1293 | 678 | consensus Proteins containing armadillo/beta-caten | 97.88 | |
| KOG2171 | 1075 | consensus Karyopherin (importin) beta 3 [Nuclear s | 97.86 | |
| KOG2023 | 885 | consensus Nuclear transport receptor Karyopherin-b | 97.86 | |
| PTZ00429 | 746 | beta-adaptin; Provisional | 97.85 | |
| KOG2759 | 442 | consensus Vacuolar H+-ATPase V1 sector, subunit H | 97.84 | |
| KOG0311 | 381 | consensus Predicted E3 ubiquitin ligase [Posttrans | 97.83 | |
| PF14634 | 44 | zf-RING_5: zinc-RING finger domain | 97.74 | |
| PTZ00429 | 746 | beta-adaptin; Provisional | 97.74 | |
| PF00514 | 41 | Arm: Armadillo/beta-catenin-like repeat; InterPro: | 97.69 | |
| PF14664 | 371 | RICTOR_N: Rapamycin-insensitive companion of mTOR, | 97.65 | |
| KOG2164 | 513 | consensus Predicted E3 ubiquitin ligase [Posttrans | 97.62 | |
| KOG3678 | 832 | consensus SARM protein (with sterile alpha and arm | 97.62 | |
| KOG2734 | 536 | consensus Uncharacterized conserved protein [Funct | 97.59 | |
| TIGR02270 | 410 | conserved hypothetical protein. Members are found | 97.58 | |
| PF14664 | 371 | RICTOR_N: Rapamycin-insensitive companion of mTOR, | 97.56 | |
| COG5574 | 271 | PEX10 RING-finger-containing E3 ubiquitin ligase [ | 97.51 | |
| KOG4159 | 398 | consensus Predicted E3 ubiquitin ligase [Posttrans | 97.49 | |
| COG5369 | 743 | Uncharacterized conserved protein [Function unknow | 97.47 | |
| PF10165 | 446 | Ric8: Guanine nucleotide exchange factor synembryn | 97.45 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 97.45 | |
| PF12678 | 73 | zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 | 97.44 | |
| KOG4413 | 524 | consensus 26S proteasome regulatory complex, subun | 97.42 | |
| KOG2023 | 885 | consensus Nuclear transport receptor Karyopherin-b | 97.4 | |
| PF00514 | 41 | Arm: Armadillo/beta-catenin-like repeat; InterPro: | 97.37 | |
| KOG0297 | 391 | consensus TNF receptor-associated factor [Signal t | 97.34 | |
| PF12348 | 228 | CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi | 97.32 | |
| KOG0212 | 675 | consensus Uncharacterized conserved protein [Funct | 97.31 | |
| COG5231 | 432 | VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene | 97.29 | |
| KOG2734 | 536 | consensus Uncharacterized conserved protein [Funct | 97.28 | |
| COG5222 | 427 | Uncharacterized conserved protein, contains RING Z | 97.28 | |
| KOG2973 | 353 | consensus Uncharacterized conserved protein [Funct | 97.21 | |
| PF10165 | 446 | Ric8: Guanine nucleotide exchange factor synembryn | 97.16 | |
| KOG1789 | 2235 | consensus Endocytosis protein RME-8, contains DnaJ | 97.12 | |
| KOG2660 | 331 | consensus Locus-specific chromosome binding protei | 97.12 | |
| PF05659 | 147 | RPW8: Arabidopsis broad-spectrum mildew resistance | 97.11 | |
| KOG0212 | 675 | consensus Uncharacterized conserved protein [Funct | 97.09 | |
| PF12348 | 228 | CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi | 97.09 | |
| KOG1789 | 2235 | consensus Endocytosis protein RME-8, contains DnaJ | 97.06 | |
| PF13646 | 88 | HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I | 96.93 | |
| KOG1242 | 569 | consensus Protein containing adaptin N-terminal re | 96.84 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 96.84 | |
| PF11841 | 160 | DUF3361: Domain of unknown function (DUF3361) | 96.81 | |
| COG1413 | 335 | FOG: HEAT repeat [Energy production and conversion | 96.8 | |
| PF13646 | 88 | HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I | 96.77 | |
| KOG4413 | 524 | consensus 26S proteasome regulatory complex, subun | 96.76 | |
| smart00185 | 41 | ARM Armadillo/beta-catenin-like repeats. Approx. 4 | 96.75 | |
| COG5369 | 743 | Uncharacterized conserved protein [Function unknow | 96.68 | |
| PF12861 | 85 | zf-Apc11: Anaphase-promoting complex subunit 11 RI | 96.66 | |
| KOG1813 | 313 | consensus Predicted E3 ubiquitin ligase [Posttrans | 96.66 | |
| KOG0824 | 324 | consensus Predicted E3 ubiquitin ligase [Posttrans | 96.55 | |
| KOG1059 | 877 | consensus Vesicle coat complex AP-3, delta subunit | 96.46 | |
| KOG1241 | 859 | consensus Karyopherin (importin) beta 1 [Nuclear s | 96.43 | |
| KOG2979 | 262 | consensus Protein involved in DNA repair [General | 96.4 | |
| PF04641 | 260 | Rtf2: Rtf2 RING-finger | 96.39 | |
| TIGR02270 | 410 | conserved hypothetical protein. Members are found | 96.39 | |
| KOG1002 | 791 | consensus Nucleotide excision repair protein RAD16 | 96.35 | |
| KOG3036 | 293 | consensus Protein involved in cell differentiation | 96.34 | |
| smart00185 | 41 | ARM Armadillo/beta-catenin-like repeats. Approx. 4 | 96.29 | |
| KOG0802 | 543 | consensus E3 ubiquitin ligase [Posttranslational m | 96.22 | |
| PF04078 | 262 | Rcd1: Cell differentiation family, Rcd1-like ; Int | 96.21 | |
| COG1413 | 335 | FOG: HEAT repeat [Energy production and conversion | 96.2 | |
| COG5240 | 898 | SEC21 Vesicle coat complex COPI, gamma subunit [In | 96.16 | |
| KOG4628 | 348 | consensus Predicted E3 ubiquitin ligase [Posttrans | 96.14 | |
| COG5152 | 259 | Uncharacterized conserved protein, contains RING a | 96.12 | |
| KOG1824 | 1233 | consensus TATA-binding protein-interacting protein | 96.07 | |
| PF09759 | 102 | Atx10homo_assoc: Spinocerebellar ataxia type 10 pr | 96.04 | |
| KOG3039 | 303 | consensus Uncharacterized conserved protein [Funct | 95.99 | |
| KOG1242 | 569 | consensus Protein containing adaptin N-terminal re | 95.9 | |
| KOG3036 | 293 | consensus Protein involved in cell differentiation | 95.76 | |
| KOG1062 | 866 | consensus Vesicle coat complex AP-1, gamma subunit | 95.75 | |
| KOG3039 | 303 | consensus Uncharacterized conserved protein [Funct | 95.71 | |
| PF04063 | 192 | DUF383: Domain of unknown function (DUF383); Inter | 95.65 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 95.63 | |
| KOG2259 | 823 | consensus Uncharacterized conserved protein [Funct | 95.48 | |
| PF13513 | 55 | HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O | 95.45 | |
| KOG1241 | 859 | consensus Karyopherin (importin) beta 1 [Nuclear s | 95.33 | |
| PF09759 | 102 | Atx10homo_assoc: Spinocerebellar ataxia type 10 pr | 95.3 | |
| COG5243 | 491 | HRD1 HRD ubiquitin ligase complex, ER membrane com | 95.29 | |
| KOG2879 | 298 | consensus Predicted E3 ubiquitin ligase [Posttrans | 95.27 | |
| PF13764 | 802 | E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4 | 95.24 | |
| COG5540 | 374 | RING-finger-containing ubiquitin ligase [Posttrans | 95.2 | |
| KOG1062 | 866 | consensus Vesicle coat complex AP-1, gamma subunit | 95.07 | |
| KOG1248 | 1176 | consensus Uncharacterized conserved protein [Funct | 95.04 | |
| KOG1061 | 734 | consensus Vesicle coat complex AP-1/AP-2/AP-4, bet | 95.0 | |
| KOG1061 | 734 | consensus Vesicle coat complex AP-1/AP-2/AP-4, bet | 94.94 | |
| COG5181 | 975 | HSH155 U2 snRNP spliceosome subunit [RNA processin | 94.84 | |
| PF11841 | 160 | DUF3361: Domain of unknown function (DUF3361) | 94.73 | |
| PF13513 | 55 | HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O | 94.73 | |
| COG5096 | 757 | Vesicle coat complex, various subunits [Intracellu | 94.66 | |
| PF05004 | 309 | IFRD: Interferon-related developmental regulator ( | 94.66 | |
| COG5215 | 858 | KAP95 Karyopherin (importin) beta [Intracellular t | 94.65 | |
| KOG4367 | 699 | consensus Predicted Zn-finger protein [Function un | 94.6 | |
| PF04063 | 192 | DUF383: Domain of unknown function (DUF383); Inter | 94.59 | |
| KOG0213 | 1172 | consensus Splicing factor 3b, subunit 1 [RNA proce | 94.57 | |
| KOG2999 | 713 | consensus Regulator of Rac1, required for phagocyt | 94.54 | |
| KOG0826 | 357 | consensus Predicted E3 ubiquitin ligase involved i | 94.43 | |
| PF11698 | 119 | V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011 | 94.4 | |
| COG5181 | 975 | HSH155 U2 snRNP spliceosome subunit [RNA processin | 94.32 | |
| COG5096 | 757 | Vesicle coat complex, various subunits [Intracellu | 94.31 | |
| PF02891 | 50 | zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR0041 | 94.28 | |
| COG5231 | 432 | VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene | 94.17 | |
| KOG3113 | 293 | consensus Uncharacterized conserved protein [Funct | 94.05 | |
| KOG1059 | 877 | consensus Vesicle coat complex AP-3, delta subunit | 94.02 | |
| KOG2817 | 394 | consensus Predicted E3 ubiquitin ligase [Posttrans | 93.9 | |
| KOG0213 | 1172 | consensus Splicing factor 3b, subunit 1 [RNA proce | 93.82 | |
| KOG1077 | 938 | consensus Vesicle coat complex AP-2, alpha subunit | 93.66 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 93.62 | |
| KOG0804 | 493 | consensus Cytoplasmic Zn-finger protein BRAP2 (BRC | 93.53 | |
| PF08569 | 335 | Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro | 93.47 | |
| KOG1824 | 1233 | consensus TATA-binding protein-interacting protein | 93.45 | |
| PF14668 | 73 | RICTOR_V: Rapamycin-insensitive companion of mTOR, | 93.43 | |
| KOG0883 | 518 | consensus Cyclophilin type, U box-containing pepti | 93.39 | |
| COG5215 | 858 | KAP95 Karyopherin (importin) beta [Intracellular t | 93.16 | |
| KOG4151 | 748 | consensus Myosin assembly protein/sexual cycle pro | 92.91 | |
| PF04078 | 262 | Rcd1: Cell differentiation family, Rcd1-like ; Int | 92.86 | |
| KOG4151 | 748 | consensus Myosin assembly protein/sexual cycle pro | 92.84 | |
| PF12755 | 97 | Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | 92.72 | |
| PF12719 | 298 | Cnd3: Nuclear condensing complex subunits, C-term | 92.66 | |
| KOG1078 | 865 | consensus Vesicle coat complex COPI, gamma subunit | 92.52 | |
| PF05004 | 309 | IFRD: Interferon-related developmental regulator ( | 92.38 | |
| PF07814 | 361 | WAPL: Wings apart-like protein regulation of heter | 92.3 | |
| PF12755 | 97 | Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | 92.22 | |
| PF12031 | 257 | DUF3518: Domain of unknown function (DUF3518); Int | 92.22 | |
| KOG1248 | 1176 | consensus Uncharacterized conserved protein [Funct | 91.99 | |
| KOG2259 | 823 | consensus Uncharacterized conserved protein [Funct | 91.98 | |
| KOG1077 | 938 | consensus Vesicle coat complex AP-2, alpha subunit | 91.86 | |
| KOG2611 | 698 | consensus Neurochondrin/leucine-rich protein (Neur | 91.77 | |
| KOG2274 | 1005 | consensus Predicted importin 9 [Intracellular traf | 91.7 | |
| PF12717 | 178 | Cnd1: non-SMC mitotic condensation complex subunit | 91.65 | |
| KOG2611 | 698 | consensus Neurochondrin/leucine-rich protein (Neur | 91.58 | |
| KOG2999 | 713 | consensus Regulator of Rac1, required for phagocyt | 91.43 | |
| KOG1785 | 563 | consensus Tyrosine kinase negative regulator CBL [ | 91.29 | |
| PF06371 | 187 | Drf_GBD: Diaphanous GTPase-binding Domain; InterPr | 91.08 | |
| KOG1060 | 968 | consensus Vesicle coat complex AP-3, beta subunit | 90.92 | |
| PF08045 | 257 | CDC14: Cell division control protein 14, SIN compo | 90.91 | |
| smart00744 | 49 | RINGv The RING-variant domain is a C4HC3 zinc-fing | 90.55 | |
| PF14570 | 48 | zf-RING_4: RING/Ubox like zinc-binding domain; PDB | 90.52 | |
| PF08569 | 335 | Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro | 90.48 | |
| PF08045 | 257 | CDC14: Cell division control protein 14, SIN compo | 90.26 | |
| PF13764 | 802 | E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4 | 89.89 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 89.55 | |
| KOG4692 | 489 | consensus Predicted E3 ubiquitin ligase [Posttrans | 89.52 | |
| PF06025 | 379 | DUF913: Domain of Unknown Function (DUF913); Inter | 89.37 | |
| COG5109 | 396 | Uncharacterized conserved protein, contains RING Z | 89.33 | |
| COG5240 | 898 | SEC21 Vesicle coat complex COPI, gamma subunit [In | 89.07 | |
| KOG1060 | 968 | consensus Vesicle coat complex AP-3, beta subunit | 88.89 | |
| KOG4653 | 982 | consensus Uncharacterized conserved protein [Funct | 88.66 | |
| COG5627 | 275 | MMS21 DNA repair protein MMS21 [DNA replication, r | 88.57 | |
| PF11701 | 157 | UNC45-central: Myosin-binding striated muscle asse | 88.57 | |
| PF06025 | 379 | DUF913: Domain of Unknown Function (DUF913); Inter | 88.56 | |
| KOG1734 | 328 | consensus Predicted RING-containing E3 ubiquitin l | 88.21 | |
| KOG1001 | 674 | consensus Helicase-like transcription factor HLTF/ | 88.13 | |
| KOG1039 | 344 | consensus Predicted E3 ubiquitin ligase [Posttrans | 88.12 | |
| KOG1788 | 2799 | consensus Uncharacterized conserved protein [Funct | 87.92 | |
| KOG4653 | 982 | consensus Uncharacterized conserved protein [Funct | 87.89 | |
| KOG4172 | 62 | consensus Predicted E3 ubiquitin ligase [Posttrans | 87.85 | |
| PF11793 | 70 | FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A. | 87.71 | |
| PF11698 | 119 | V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011 | 87.67 | |
| KOG3800 | 300 | consensus Predicted E3 ubiquitin ligase containing | 87.63 | |
| PF12719 | 298 | Cnd3: Nuclear condensing complex subunits, C-term | 87.54 | |
| KOG0828 | 636 | consensus Predicted E3 ubiquitin ligase [Posttrans | 87.31 | |
| PF14447 | 55 | Prok-RING_4: Prokaryotic RING finger family 4 | 87.06 | |
| PF06371 | 187 | Drf_GBD: Diaphanous GTPase-binding Domain; InterPr | 86.74 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 86.31 | |
| PF02985 | 31 | HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re | 86.28 | |
| PF05918 | 556 | API5: Apoptosis inhibitory protein 5 (API5); Inter | 85.71 | |
| PF08324 | 268 | PUL: PUL domain; InterPro: IPR013535 The PUL (afte | 85.3 | |
| PF12717 | 178 | Cnd1: non-SMC mitotic condensation complex subunit | 85.2 | |
| KOG1058 | 948 | consensus Vesicle coat complex COPI, beta subunit | 84.88 | |
| COG5175 | 480 | MOT2 Transcriptional repressor [Transcription] | 84.68 | |
| KOG0825 | 1134 | consensus PHD Zn-finger protein [General function | 84.37 | |
| KOG3161 | 861 | consensus Predicted E3 ubiquitin ligase [Posttrans | 84.03 | |
| COG5194 | 88 | APC11 Component of SCF ubiquitin ligase and anapha | 83.77 | |
| KOG0915 | 1702 | consensus Uncharacterized conserved protein [Funct | 83.73 | |
| KOG1943 | 1133 | consensus Beta-tubulin folding cofactor D [Posttra | 83.64 | |
| PF12460 | 415 | MMS19_C: RNAPII transcription regulator C-terminal | 83.45 | |
| COG5219 | 1525 | Uncharacterized conserved protein, contains RING Z | 83.05 | |
| PF14500 | 262 | MMS19_N: Dos2-interacting transcription regulator | 82.82 | |
| KOG1493 | 84 | consensus Anaphase-promoting complex (APC), subuni | 82.15 | |
| COG5209 | 315 | RCD1 Uncharacterized protein involved in cell diff | 82.0 | |
| KOG0567 | 289 | consensus HEAT repeat-containing protein [General | 81.93 | |
| KOG2274 | 1005 | consensus Predicted importin 9 [Intracellular traf | 81.88 | |
| PF12031 | 257 | DUF3518: Domain of unknown function (DUF3518); Int | 81.6 | |
| PF02985 | 31 | HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re | 81.55 | |
| PF11707 | 330 | Npa1: Ribosome 60S biogenesis N-terminal; InterPro | 80.53 | |
| KOG1943 | 1133 | consensus Beta-tubulin folding cofactor D [Posttra | 80.46 | |
| KOG0396 | 389 | consensus Uncharacterized conserved protein [Funct | 80.4 | |
| KOG2062 | 929 | consensus 26S proteasome regulatory complex, subun | 80.39 | |
| PF08324 | 268 | PUL: PUL domain; InterPro: IPR013535 The PUL (afte | 80.34 | |
| KOG1788 | 2799 | consensus Uncharacterized conserved protein [Funct | 80.07 |
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2e-26 Score=283.54 Aligned_cols=278 Identities=26% Similarity=0.308 Sum_probs=250.2
Q ss_pred CchHHHHHHHhcCC--CHHHHHHHHHHHHHHhccChhhHHHHHh-cCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCch
Q 004761 444 TPYVKKLIEDLNST--SNEIQASAAAELRLLAKHNMENRMIIGN-CGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDEN 520 (732)
Q Consensus 444 ~~~i~~Lv~~L~s~--~~~~~~~Al~~L~~La~~~~~~r~~i~~-~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~ 520 (732)
...+.++|+.|+++ +++.+..|+..|+.+++.++++|..+++ .|+||.|+.+|++++..++++|+.+|.||+.++++
T Consensus 12 ~~~v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~sg~~~vk~nAaaaL~nLS~~e~n 91 (2102)
T PLN03200 12 LASVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRSGTLGAKVNAAAVLGVLCKEEDL 91 (2102)
T ss_pred HHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHH
Confidence 55689999999977 7889999999999999999999999996 79999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccC---chhHHHHH-hcchHHHHHHhhcCCCH---HHHHHHHHHH
Q 004761 521 KAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVL---EEYKAKIG-RSGAVKALVDLLGSGTL---RGRKDAATAL 593 (732)
Q Consensus 521 k~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~---~~~k~~i~-~~g~i~~Lv~lL~~~~~---~~~~~Al~aL 593 (732)
+..++..|++++|+.+|++|+.+++++|+++|++|+.. ++++..|+ ..|++|+|++++++++. ..+..|+.+|
T Consensus 92 k~~Iv~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~AL 171 (2102)
T PLN03200 92 RVKVLLGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGAL 171 (2102)
T ss_pred HHHHHHcCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999986 44565555 57999999999998752 3456778999
Q ss_pred HHhccCchhHH-HHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCC-hhhHHHHHHcCcHHHHHHHHhcC-CHHHHHH
Q 004761 594 FNLSIFHENKA-RIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTV-GEGRLAIAREGGIPSLVEVVESG-SQRGKEN 669 (732)
Q Consensus 594 ~nLs~~~~n~~-~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~-~~~r~~i~~~~~I~~Lv~lL~~~-s~~~~e~ 669 (732)
+|||.+++++. .++++|+|+.|+.+| ++++.+++.|+.+|.+++.+ ++++..+++.|+|+.|+++|+++ ++..+++
T Consensus 172 ~nLs~~~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~ 251 (2102)
T PLN03200 172 RNLCGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNEVSVRAE 251 (2102)
T ss_pred HHHhcCccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCCChHHHHH
Confidence 99999999886 468999999999999 77889999999999988865 67899999999999999999875 5689999
Q ss_pred HHHHHHHHhcCChHhHHHHHhCCCHHHHHHchhcCC---------hHHHHHHHHHHHHhhc
Q 004761 670 AASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGT---------PRAKEKAQQLLSHFRN 721 (732)
Q Consensus 670 A~~~L~~L~~~~~~~~~~v~~~G~i~~L~~Ll~~g~---------~~~k~kA~~lL~~l~~ 721 (732)
|+++|.+||.++++++..+++.|+++.|+.++.+.+ ...++.|.++|.++..
T Consensus 252 AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcg 312 (2102)
T PLN03200 252 AAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICG 312 (2102)
T ss_pred HHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999998644 3358999999999865
|
|
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=6e-25 Score=270.56 Aligned_cols=284 Identities=25% Similarity=0.325 Sum_probs=250.7
Q ss_pred ccccCchHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCc
Q 004761 440 EVTTTPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDE 519 (732)
Q Consensus 440 ~~~~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~ 519 (732)
.....+.++.|+++|++++...|..|++.|+++++.+.+++..+.++|+||+|+++|++++.+++++|+++|.|++.++.
T Consensus 441 aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~ 520 (2102)
T PLN03200 441 ALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSE 520 (2102)
T ss_pred HHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcH
Confidence 35567789999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred hHHH-HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhH------------------------------------
Q 004761 520 NKAM-IAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYK------------------------------------ 562 (732)
Q Consensus 520 ~k~~-i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k------------------------------------ 562 (732)
+... +.+.|++++|+++|++++.+.+.+|+++|++|+...++.
T Consensus 521 qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~ 600 (2102)
T PLN03200 521 DIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDL 600 (2102)
T ss_pred HHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHH
Confidence 6555 447899999999999999999999999999996322110
Q ss_pred -HH-HHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhccCc-hhHHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhC
Q 004761 563 -AK-IGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFH-ENKARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLST 638 (732)
Q Consensus 563 -~~-i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~-~n~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~ 638 (732)
.. ....|+++.|+++|++++...++.|+++|.|++.++ +++..++..|+|++|+.+| +.+..+...++++|.||..
T Consensus 601 ~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~ 680 (2102)
T PLN03200 601 VREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSR 680 (2102)
T ss_pred HHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHh
Confidence 00 112489999999999999999999999999999855 5678899999999999999 7778899999999999985
Q ss_pred C--hhhHHHHHHcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHH
Q 004761 639 V--GEGRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLL 716 (732)
Q Consensus 639 ~--~~~r~~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL 716 (732)
+ .+.+..+++.|+++.|++++.+.+...++.|+.+|.+++. +++....+.++|+++.|+.++++|+++.|+.|.++|
T Consensus 681 ~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~-~~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL 759 (2102)
T PLN03200 681 SIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLS-DPEVAAEALAEDIILPLTRVLREGTLEGKRNAARAL 759 (2102)
T ss_pred CCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHc-CchHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHH
Confidence 3 3455678899999999999999999999999999999999 566778888999999999999999999999999998
Q ss_pred HHhhcccc
Q 004761 717 SHFRNQRE 724 (732)
Q Consensus 717 ~~l~~~~~ 724 (732)
..|.+.++
T Consensus 760 ~~L~~~~~ 767 (2102)
T PLN03200 760 AQLLKHFP 767 (2102)
T ss_pred HHHHhCCC
Confidence 88876655
|
|
| >KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.8e-25 Score=241.95 Aligned_cols=281 Identities=24% Similarity=0.298 Sum_probs=249.6
Q ss_pred cccCchHHHHHHHhcC-CCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCC-
Q 004761 441 VTTTPYVKKLIEDLNS-TSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSIND- 518 (732)
Q Consensus 441 ~~~~~~i~~Lv~~L~s-~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~- 518 (732)
....|.|+.+|++|.. .++..+.+|+++|.+++.++.+.-..++++|++|.++.++.+++..++++|+++|+|++.+.
T Consensus 105 vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~ 184 (514)
T KOG0166|consen 105 VIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSP 184 (514)
T ss_pred HHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCCh
Confidence 4446889999999974 55899999999999999999999999999999999999999999999999999999999984
Q ss_pred chHHHHHHcCCHHHHHHHHcCCCH-HHHHHHHHHHHHhccCchhHHHHH-hcchHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 004761 519 ENKAMIAEAGAIEPLIHVLKSGNG-GAKENSAAALFSLSVLEEYKAKIG-RSGAVKALVDLLGSGTLRGRKDAATALFNL 596 (732)
Q Consensus 519 ~~k~~i~~~g~l~~Lv~lL~~~~~-e~~~~Aa~~L~~Ls~~~~~k~~i~-~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nL 596 (732)
..|..+...|++++|+.++...+. ....+++|+|.||+...+....+. ...++|.|..++.+.++.+..+|++||.+|
T Consensus 185 ~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyL 264 (514)
T KOG0166|consen 185 DCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYL 264 (514)
T ss_pred HHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 568889999999999999988764 688899999999998664333333 337899999999999999999999999999
Q ss_pred ccCch-hHHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCChhhH-HHHHHcCcHHHHHHHHh-cCCHHHHHHHHH
Q 004761 597 SIFHE-NKARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGEGR-LAIAREGGIPSLVEVVE-SGSQRGKENAAS 672 (732)
Q Consensus 597 s~~~~-n~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~~r-~~i~~~~~I~~Lv~lL~-~~s~~~~e~A~~ 672 (732)
+.++. .-..++++|+++.|+++| ..+..++..|+.++.|++.+.+.+ +.+++.|+++.|..++. +.....+..|+|
T Consensus 265 sdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW 344 (514)
T KOG0166|consen 265 TDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACW 344 (514)
T ss_pred hcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHH
Confidence 97654 556778899999999999 777788899999999998877654 67789999999999998 455558899999
Q ss_pred HHHHHhcCChHhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHhhc
Q 004761 673 ILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFRN 721 (732)
Q Consensus 673 ~L~~L~~~~~~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~ 721 (732)
++.|++.+++++.+.+++.|++|.|+.+++++.-+.|+.|++++.++..
T Consensus 345 ~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts 393 (514)
T KOG0166|consen 345 TISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTS 393 (514)
T ss_pred HHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcc
Confidence 9999999999999999999999999999999999999999999998754
|
|
| >KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3e-24 Score=218.75 Aligned_cols=283 Identities=24% Similarity=0.329 Sum_probs=257.7
Q ss_pred CccccccCchHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhc
Q 004761 437 RSDEVTTTPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSI 516 (732)
Q Consensus 437 ~~~~~~~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~ 516 (732)
+....+..|.+..+.++-++.+..+|+.++.+|-+++ ++.+||..++.+|++|.|+.++++.|..+|+.+++++.|++.
T Consensus 159 nk~kiA~sGaL~pltrLakskdirvqrnatgaLlnmT-hs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaV 237 (550)
T KOG4224|consen 159 NKVKIARSGALEPLTRLAKSKDIRVQRNATGALLNMT-HSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAV 237 (550)
T ss_pred chhhhhhccchhhhHhhcccchhhHHHHHHHHHHHhh-hhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhh
Confidence 3334556777888889778888899999999999998 567999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHcC--CHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHH
Q 004761 517 NDENKAMIAEAG--AIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALF 594 (732)
Q Consensus 517 ~~~~k~~i~~~g--~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~ 594 (732)
+..+|+.+++.+ .++.|+.++.++++.++..|.-+|.+|+...++...|.+.|.+|.++++|++.........+.++.
T Consensus 238 d~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIr 317 (550)
T KOG4224|consen 238 DRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIR 317 (550)
T ss_pred hHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHh
Confidence 999999999877 999999999999999999999999999999999999999999999999999888788888899999
Q ss_pred HhccCchhHHHHHhhchHHHHHHhc--CCChHHHHHHHHHHHHHhC-ChhhHHHHHHcCcHHHHHHHHhcCCHHHHHHHH
Q 004761 595 NLSIFHENKARIIQAGAVKHLVDLM--DPSTGMVDKAVALLANLST-VGEGRLAIAREGGIPSLVEVVESGSQRGKENAA 671 (732)
Q Consensus 595 nLs~~~~n~~~lv~~G~V~~Ll~lL--~~~~~l~e~al~iL~nLa~-~~~~r~~i~~~~~I~~Lv~lL~~~s~~~~e~A~ 671 (732)
|++.++.|-.-++++|.+.+|+++| ..+..++-.|..+|+||+. ....+..|.+.|+|+.+.+++..++-..++.--
T Consensus 318 nisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseis 397 (550)
T KOG4224|consen 318 NISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEIS 397 (550)
T ss_pred hcccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHH
Confidence 9999999999999999999999999 5566789999999999988 445788999999999999999999888888888
Q ss_pred HHHHHHhcCChHhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHhhc
Q 004761 672 SILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFRN 721 (732)
Q Consensus 672 ~~L~~L~~~~~~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~ 721 (732)
+++..|+. +......+.+.|+++.|+.+..+.+.+++..|+.+|-+|+.
T Consensus 398 ac~a~Lal-~d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss 446 (550)
T KOG4224|consen 398 ACIAQLAL-NDNDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSS 446 (550)
T ss_pred HHHHHHHh-ccccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhh
Confidence 88888877 44567888999999999999999999999999999998865
|
|
| >KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.92 E-value=7e-24 Score=216.08 Aligned_cols=282 Identities=26% Similarity=0.349 Sum_probs=258.3
Q ss_pred ccccCchHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCc
Q 004761 440 EVTTTPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDE 519 (732)
Q Consensus 440 ~~~~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~ 519 (732)
..+.-..+..|+..+.++..++|..++++|.+|+.. ..||..++..|++.+|.++-++.|..+|.++..+|.|+....+
T Consensus 121 liv~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~-d~nk~kiA~sGaL~pltrLakskdirvqrnatgaLlnmThs~E 199 (550)
T KOG4224|consen 121 LIVSLLGLDLLILQMMTDGVEVQCNAVGCITNLATF-DSNKVKIARSGALEPLTRLAKSKDIRVQRNATGALLNMTHSRE 199 (550)
T ss_pred EEEeccChHHHHHHhcCCCcEEEeeehhhhhhhhcc-ccchhhhhhccchhhhHhhcccchhhHHHHHHHHHHHhhhhhh
Confidence 344445567777777788889999999999999977 5899999999999999998889999999999999999999999
Q ss_pred hHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHHhcc--hHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 004761 520 NKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRSG--AVKALVDLLGSGTLRGRKDAATALFNLS 597 (732)
Q Consensus 520 ~k~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g--~i~~Lv~lL~~~~~~~~~~Al~aL~nLs 597 (732)
||+.++.+|++|.|+.++++++..+++++..+|.+++.+..++..+++.+ .+|.|++++++++++++-.|..||.||+
T Consensus 200 nRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnla 279 (550)
T KOG4224|consen 200 NRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLA 279 (550)
T ss_pred hhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhc
Confidence 99999999999999999999999999999999999999999999999886 9999999999999999999999999999
Q ss_pred cCchhHHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCChhhHHHHHHcCcHHHHHHHHhcC-CHHHHHHHHHHHH
Q 004761 598 IFHENKARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVESG-SQRGKENAASILL 675 (732)
Q Consensus 598 ~~~~n~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~~r~~i~~~~~I~~Lv~lL~~~-s~~~~e~A~~~L~ 675 (732)
...+-+..++++|.+|.++++| ++...+.-..++++.|++-++-+..-|+++|++.+||.+|+.+ +++.+-+|+.+|+
T Consensus 280 sdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLr 359 (550)
T KOG4224|consen 280 SDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLR 359 (550)
T ss_pred ccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHH
Confidence 9999999999999999999999 7777788888999999999998888899999999999999886 5569999999999
Q ss_pred HHhcCChHhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHhhcc
Q 004761 676 QLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFRNQ 722 (732)
Q Consensus 676 ~L~~~~~~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~~ 722 (732)
+|+.....++..+.+.|++|+|..|+..|.-.++.....++..|.-.
T Consensus 360 nLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~ 406 (550)
T KOG4224|consen 360 NLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALN 406 (550)
T ss_pred HHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhc
Confidence 99998888899999999999999999999988888877777776543
|
|
| >KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.7e-22 Score=217.61 Aligned_cols=286 Identities=23% Similarity=0.264 Sum_probs=250.1
Q ss_pred ccccCchHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCH-HHHHHHHHHHHHhhcCC
Q 004761 440 EVTTTPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQ-LTQEHAVTALLNLSIND 518 (732)
Q Consensus 440 ~~~~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~-~v~~~A~~~L~nLs~~~ 518 (732)
...+.+.++.+++++.+++.+++..|+++|.+++.+++..|..+...|++++|+.++...+. ....++.|+|.|||.+.
T Consensus 147 ~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk 226 (514)
T KOG0166|consen 147 VVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGK 226 (514)
T ss_pred ccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCC
Confidence 35567889999999999999999999999999999999999999999999999999987765 78899999999999875
Q ss_pred c-hHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCc-hhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 004761 519 E-NKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLE-EYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNL 596 (732)
Q Consensus 519 ~-~k~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~-~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nL 596 (732)
+ ....-.-...++.|..++.+.+.++...|+|+|.+|+... +.-..+...|++|.|+++|.+.+..++..|++++.|+
T Consensus 227 ~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNI 306 (514)
T KOG0166|consen 227 NPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNI 306 (514)
T ss_pred CCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccce
Confidence 3 2222223457999999999999999999999999999754 4555667789999999999999999999999999999
Q ss_pred ccCchhHH-HHHhhchHHHHHHhc--CCChHHHHHHHHHHHHHhC-ChhhHHHHHHcCcHHHHHHHHhcCCHHHHHHHHH
Q 004761 597 SIFHENKA-RIIQAGAVKHLVDLM--DPSTGMVDKAVALLANLST-VGEGRLAIAREGGIPSLVEVVESGSQRGKENAAS 672 (732)
Q Consensus 597 s~~~~n~~-~lv~~G~V~~Ll~lL--~~~~~l~e~al~iL~nLa~-~~~~r~~i~~~~~I~~Lv~lL~~~s~~~~e~A~~ 672 (732)
....+... .++..|+++.|..++ ++...+...|++++.|++. ..+...+++++|.+|.|+.+|+++..+.+..|+|
T Consensus 307 vtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAaw 386 (514)
T KOG0166|consen 307 VTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAW 386 (514)
T ss_pred eeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHH
Confidence 99888776 577899999999999 4456688999999999965 4457789999999999999999999999999999
Q ss_pred HHHHHhcC-ChHhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHhhccccC
Q 004761 673 ILLQLCLH-SPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFRNQREG 725 (732)
Q Consensus 673 ~L~~L~~~-~~~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~~~~~ 725 (732)
++.|+|.+ +++....+++.|++++|+.++...+.+.-..+...|.++....+.
T Consensus 387 aIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~ 440 (514)
T KOG0166|consen 387 AISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGEA 440 (514)
T ss_pred HHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHH
Confidence 99999985 678888999999999999999888888888888888888665443
|
|
| >COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3e-23 Score=209.85 Aligned_cols=282 Identities=22% Similarity=0.249 Sum_probs=245.0
Q ss_pred ccccCchHHHHHHHhcC-CCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCC
Q 004761 440 EVTTTPYVKKLIEDLNS-TSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSIND 518 (732)
Q Consensus 440 ~~~~~~~i~~Lv~~L~s-~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~ 518 (732)
...+.|.|+.+|+++.. ...-.+.+|++.|.++++........++++|++|.++.+|.+.+.+++++++|+|+|++.+.
T Consensus 109 ~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS 188 (526)
T COG5064 109 PVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDS 188 (526)
T ss_pred hHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCc
Confidence 45668889999999954 44456779999999999988777788889999999999999999999999999999999985
Q ss_pred c-hHHHHHHcCCHHHHHHHHcCCCH--HHHHHHHHHHHHhccCchhH-HHHHhcchHHHHHHhhcCCCHHHHHHHHHHHH
Q 004761 519 E-NKAMIAEAGAIEPLIHVLKSGNG--GAKENSAAALFSLSVLEEYK-AKIGRSGAVKALVDLLGSGTLRGRKDAATALF 594 (732)
Q Consensus 519 ~-~k~~i~~~g~l~~Lv~lL~~~~~--e~~~~Aa~~L~~Ls~~~~~k-~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~ 594 (732)
. .|..+.+.|++++++.+|.+... ....++.|+|.||+.-.... ..-.-..++|.|.+++-+.++++..+|++||.
T Consensus 189 ~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiS 268 (526)
T COG5064 189 EGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAIS 268 (526)
T ss_pred hhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 4 58888999999999999987654 67889999999999743221 11122357899999999999999999999999
Q ss_pred HhccCchhH-HHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCChhhH-HHHHHcCcHHHHHHHHhcCCHHHHHHHH
Q 004761 595 NLSIFHENK-ARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGEGR-LAIAREGGIPSLVEVVESGSQRGKENAA 671 (732)
Q Consensus 595 nLs~~~~n~-~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~~r-~~i~~~~~I~~Lv~lL~~~s~~~~e~A~ 671 (732)
.|+..+..+ ..+++.|+.+.|+++| .++..++..|+..++|++...+.+ ..+++.|+++.+-.+|.+.-...+..||
T Consensus 269 YlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaC 348 (526)
T COG5064 269 YLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEAC 348 (526)
T ss_pred HhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhh
Confidence 999977554 4678899999999999 778888999999999998877755 5678899999999999988888999999
Q ss_pred HHHHHHhcCChHhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHhhc
Q 004761 672 SILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFRN 721 (732)
Q Consensus 672 ~~L~~L~~~~~~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~ 721 (732)
|++.|++.++.++.+.+++.+++|+|+.++..-.-+.|+.|.+++.+...
T Consensus 349 WTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNats 398 (526)
T COG5064 349 WTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATS 398 (526)
T ss_pred eeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 99999999999999999999999999999999889999999998887754
|
|
| >PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.7e-23 Score=171.41 Aligned_cols=72 Identities=51% Similarity=0.931 Sum_probs=63.8
Q ss_pred CCCccccccCcccCCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHcC
Q 004761 236 IPPYFRCPLSLELMIDPVIVASGQTYERVFIQKWLDHGLNICPKTRQTLAHTNLIPNYTVKAMIENWCEENN 307 (732)
Q Consensus 236 ~p~~f~Cpi~~~lm~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn~~l~~~i~~~~~~~~ 307 (732)
+|++|+||||+++|+|||++++||||||.+|++|+..++.+||.|+++++..+++||+.||+.|++|+.+|.
T Consensus 1 iP~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~pn~~Lk~~I~~~~~~~~ 72 (73)
T PF04564_consen 1 IPDEFLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESDLIPNRALKSAIEEWCAENK 72 (73)
T ss_dssp SSGGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSEE-HHHHHHHHHHHHHCT
T ss_pred CCcccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccceECHHHHHHHHHHHHHcc
Confidence 699999999999999999999999999999999999977999999999999999999999999999999985
|
Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A .... |
| >COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1e-20 Score=191.56 Aligned_cols=279 Identities=22% Similarity=0.248 Sum_probs=243.2
Q ss_pred cccCchHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccC--CHHHHHHHHHHHHHhhcCC
Q 004761 441 VTTTPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSE--AQLTQEHAVTALLNLSIND 518 (732)
Q Consensus 441 ~~~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~--~~~v~~~A~~~L~nLs~~~ 518 (732)
..+.+.|+.++++|.+.+.+++.+|+++|.+++.+++..|..+.+.|++.+|+.+|.+. +..+..++.|+|.||+...
T Consensus 153 Vvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGk 232 (526)
T COG5064 153 VVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGK 232 (526)
T ss_pred EEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCC
Confidence 55678899999999999999999999999999999999999999999999999999765 4588999999999999863
Q ss_pred c---hHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhH-HHHHhcchHHHHHHhhcCCCHHHHHHHHHHHH
Q 004761 519 E---NKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYK-AKIGRSGAVKALVDLLGSGTLRGRKDAATALF 594 (732)
Q Consensus 519 ~---~k~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k-~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~ 594 (732)
+ +-..+. .+++.|.+++.+.++++...|+|+|.+|+....-+ ..+...|..+.|+++|.+.+..++..|++.+.
T Consensus 233 nP~P~w~~is--qalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vG 310 (526)
T COG5064 233 NPPPDWSNIS--QALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVG 310 (526)
T ss_pred CCCCchHHHH--HHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhc
Confidence 2 222232 35899999999999999999999999999866444 45556799999999999999999999999999
Q ss_pred HhccCchhHH-HHHhhchHHHHHHhc-CCChHHHHHHHHHHHHH-hCChhhHHHHHHcCcHHHHHHHHhcCCHHHHHHHH
Q 004761 595 NLSIFHENKA-RIIQAGAVKHLVDLM-DPSTGMVDKAVALLANL-STVGEGRLAIAREGGIPSLVEVVESGSQRGKENAA 671 (732)
Q Consensus 595 nLs~~~~n~~-~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nL-a~~~~~r~~i~~~~~I~~Lv~lL~~~s~~~~e~A~ 671 (732)
|+....+.+. .++..|+++.+..+| ++..++...|++++.|+ +.+.+..+++++++.+|.|+++|..-.-..+..||
T Consensus 311 NIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEAC 390 (526)
T COG5064 311 NIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEAC 390 (526)
T ss_pred CeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHH
Confidence 9999877665 577899999999999 77779999999999999 45666778999999999999999988889999999
Q ss_pred HHHHHHhcC---ChHhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHhhc
Q 004761 672 SILLQLCLH---SPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFRN 721 (732)
Q Consensus 672 ~~L~~L~~~---~~~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~ 721 (732)
|++.|...+ .|+..+.+++.|.+.+|+.++...+.++-+.|..+++++-+
T Consensus 391 WAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk 443 (526)
T COG5064 391 WAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILK 443 (526)
T ss_pred HHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCccchhhhHHHHHHHHh
Confidence 999999875 57888999999999999999998888787888877777644
|
|
| >PF05804 KAP: Kinesin-associated protein (KAP) | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.3e-16 Score=178.50 Aligned_cols=258 Identities=25% Similarity=0.269 Sum_probs=216.7
Q ss_pred HHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHHHc
Q 004761 459 NEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAMIAEAGAIEPLIHVLK 538 (732)
Q Consensus 459 ~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k~~i~~~g~l~~Lv~lL~ 538 (732)
....+.+++.|.+++.+ ..+...+.+.|.|+.|+.+|.+++.++...+++.|.+||...+|+..|.+.|++++|+.++.
T Consensus 263 eqLlrv~~~lLlNLAed-~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~ 341 (708)
T PF05804_consen 263 EQLLRVAFYLLLNLAED-PRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLP 341 (708)
T ss_pred HHHHHHHHHHHHHHhcC-hHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhc
Confidence 34456788899999955 58889999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhccCchhHHHHHhhchHHHHHHh
Q 004761 539 SGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFHENKARIIQAGAVKHLVDL 618 (732)
Q Consensus 539 ~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~n~~~lv~~G~V~~Ll~l 618 (732)
+++.+.+..++.+|+|||.+++.|..+...|++|.|+.+|.+++ .+..++.+|+|||..+++|..+...+++|.++++
T Consensus 342 s~~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~~--~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~ 419 (708)
T PF05804_consen 342 SENEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDPN--FREVALKILYNLSMDDEARSMFAYTDCIPQLMQM 419 (708)
T ss_pred CCCHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCCc--hHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHH
Confidence 99999999999999999999999999999999999999998654 4466999999999999999999999999999999
Q ss_pred c--CCChHHHHHHHHHHHHHhCChhhHHHHHHcCcHHHHHHHHhc-----------------------------------
Q 004761 619 M--DPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVES----------------------------------- 661 (732)
Q Consensus 619 L--~~~~~l~e~al~iL~nLa~~~~~r~~i~~~~~I~~Lv~lL~~----------------------------------- 661 (732)
+ .++..+...+++++.||+..+.+.+.+.+.+|++.|++...+
T Consensus 420 Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v 499 (708)
T PF05804_consen 420 LLENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTRDPLLLKLIRNISQHDGPLKELFVDFIGDLAKIV 499 (708)
T ss_pred HHhCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhcccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHh
Confidence 8 455556667788888999988887777777777766653211
Q ss_pred ---CCHHHHHHHHHHHHHHhcCChHhHHHHHhCCCHHHHHHchhcCC--hHHHHHHHHHHHHh
Q 004761 662 ---GSQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGT--PRAKEKAQQLLSHF 719 (732)
Q Consensus 662 ---~s~~~~e~A~~~L~~L~~~~~~~~~~v~~~G~i~~L~~Ll~~g~--~~~k~kA~~lL~~l 719 (732)
.+++..-.++++|.||...+..+...+.+.+++|.|..++..|. +...-.+..++..+
T Consensus 500 ~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtl 562 (708)
T PF05804_consen 500 SSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTL 562 (708)
T ss_pred hcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHH
Confidence 13444666888888888767777787778999999999998874 34444444444444
|
|
| >PF05804 KAP: Kinesin-associated protein (KAP) | Back alignment and domain information |
|---|
Probab=99.74 E-value=8.2e-16 Score=176.98 Aligned_cols=279 Identities=21% Similarity=0.280 Sum_probs=224.9
Q ss_pred cccCchHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCch
Q 004761 441 VTTTPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDEN 520 (732)
Q Consensus 441 ~~~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~ 520 (732)
+...+.|+.|++.|.+++.+....++..|..|+-. .+|+..|.+.|+|+.|+.++.+++..++..++++|.|||.++..
T Consensus 286 M~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~-~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~ 364 (708)
T PF05804_consen 286 MVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIF-KENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPEL 364 (708)
T ss_pred HHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHH
Confidence 45678899999999999999999999999999965 48999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcC-CCHHHHHHHHHHHHHhccC
Q 004761 521 KAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGS-GTLRGRKDAATALFNLSIF 599 (732)
Q Consensus 521 k~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~-~~~~~~~~Al~aL~nLs~~ 599 (732)
|..|+..|.+|.|+.+|.++ ..+..+..+|.+||..+++|..+...+++|.++++|-. ++.++...++.++.||+.+
T Consensus 365 R~~mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~ 442 (708)
T PF05804_consen 365 RSQMVSLGLIPKLVELLKDP--NFREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALN 442 (708)
T ss_pred HHHHHHCCCcHHHHHHhCCC--chHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcC
Confidence 99999999999999999865 45677999999999999999999999999999998655 3455556677777788887
Q ss_pred chhHHHHHhhchHHHHHHhc---------------------------------------CCChHHHHHHHHHHHHHhC--
Q 004761 600 HENKARIIQAGAVKHLVDLM---------------------------------------DPSTGMVDKAVALLANLST-- 638 (732)
Q Consensus 600 ~~n~~~lv~~G~V~~Ll~lL---------------------------------------~~~~~l~e~al~iL~nLa~-- 638 (732)
+.|...+.+.|+++.|++.. ..+....-.++++|+||..
T Consensus 443 ~rnaqlm~~g~gL~~L~~ra~~~~D~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ 522 (708)
T PF05804_consen 443 KRNAQLMCEGNGLQSLMKRALKTRDPLLLKLIRNISQHDGPLKELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTIPD 522 (708)
T ss_pred HHHHHHHHhcCcHHHHHHHHHhcccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCC
Confidence 77777777666665544422 0122333455666666642
Q ss_pred ------------------------------------------ChhhHHHHHHcCcHHHHHHHHhc--CCHHHHHHHHHHH
Q 004761 639 ------------------------------------------VGEGRLAIAREGGIPSLVEVVES--GSQRGKENAASIL 674 (732)
Q Consensus 639 ------------------------------------------~~~~r~~i~~~~~I~~Lv~lL~~--~s~~~~e~A~~~L 674 (732)
.+.+...+.+.|.++.|+.++.. .+.+..-..+.++
T Consensus 523 ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f 602 (708)
T PF05804_consen 523 LDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVF 602 (708)
T ss_pred cCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHH
Confidence 23344555677889999999966 3577788888889
Q ss_pred HHHhcCChHhHHHHH-hCCCHHHHHHchhcCChHHHHHHHHHHHHhhccc
Q 004761 675 LQLCLHSPKFCTLVL-QEGAVPPLVGLSQSGTPRAKEKAQQLLSHFRNQR 723 (732)
Q Consensus 675 ~~L~~~~~~~~~~v~-~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~~~ 723 (732)
+++..+.. .+..++ +.+++..|+.++++.++.+++.|-.+|-.+.+..
T Consensus 603 ~~ll~h~~-tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d 651 (708)
T PF05804_consen 603 YQLLFHEE-TREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYD 651 (708)
T ss_pred HHHHcChH-HHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhC
Confidence 99988754 444454 5789999999999999999999999888886653
|
|
| >smart00504 Ubox Modified RING finger domain | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.9e-17 Score=133.77 Aligned_cols=63 Identities=54% Similarity=0.910 Sum_probs=60.3
Q ss_pred ccccccCcccCCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHH
Q 004761 239 YFRCPLSLELMIDPVIVASGQTYERVFIQKWLDHGLNICPKTRQTLAHTNLIPNYTVKAMIENW 302 (732)
Q Consensus 239 ~f~Cpi~~~lm~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn~~l~~~i~~~ 302 (732)
+|.||||+++|+|||+++|||+|||.||.+|+.. +.+||.|+++++..+++||..||+.|++|
T Consensus 1 ~~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~-~~~cP~~~~~~~~~~l~~~~~l~~~i~~~ 63 (63)
T smart00504 1 EFLCPISLEVMKDPVILPSGQTYERRAIEKWLLS-HGTDPVTGQPLTHEDLIPNLALKSAIQEW 63 (63)
T ss_pred CcCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHH-CCCCCCCcCCCChhhceeCHHHHHHHHhC
Confidence 5899999999999999999999999999999987 57899999999999999999999999998
|
Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination. |
| >KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.67 E-value=9.1e-16 Score=177.91 Aligned_cols=265 Identities=27% Similarity=0.296 Sum_probs=227.2
Q ss_pred HHH-HHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccC------------CHHHHHHHHHHHHHhhcC-CchHHHHH-
Q 004761 461 IQA-SAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSE------------AQLTQEHAVTALLNLSIN-DENKAMIA- 525 (732)
Q Consensus 461 ~~~-~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~------------~~~v~~~A~~~L~nLs~~-~~~k~~i~- 525 (732)
-+. .|+..|..++.+ ++.|..+.+.|++.++-+|+.-+ .-.++..|..+|-||.+. ..||..+.
T Consensus 313 H~lcaA~~~lMK~SFD-EEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs 391 (2195)
T KOG2122|consen 313 HQLCAALCTLMKLSFD-EEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCS 391 (2195)
T ss_pred hhhHHHHHHHHHhhcc-HHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhh
Confidence 344 677777777754 69999999999999999987521 245789999999999886 46788777
Q ss_pred HcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCc--hhHHHHHhcchHHHHHHh-hcCCCHHHHHHHHHHHHHhccC-ch
Q 004761 526 EAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLE--EYKAKIGRSGAVKALVDL-LGSGTLRGRKDAATALFNLSIF-HE 601 (732)
Q Consensus 526 ~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~--~~k~~i~~~g~i~~Lv~l-L~~~~~~~~~~Al~aL~nLs~~-~~ 601 (732)
..|+++.+|..|.+...++....+.+|.||+... .-|..+.+.|-+..|+.. |+.......+..+.|||||+.+ .+
T Consensus 392 ~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcte 471 (2195)
T KOG2122|consen 392 QRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTE 471 (2195)
T ss_pred hhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccc
Confidence 5699999999999999999999999999999843 336667777988888876 5666677899999999999985 57
Q ss_pred hHHHHHh-hchHHHHHHhc-C----CChHHHHHHHHHHHHH----hCChhhHHHHHHcCcHHHHHHHHhcCCHHHHHHHH
Q 004761 602 NKARIIQ-AGAVKHLVDLM-D----PSTGMVDKAVALLANL----STVGEGRLAIAREGGIPSLVEVVESGSQRGKENAA 671 (732)
Q Consensus 602 n~~~lv~-~G~V~~Ll~lL-~----~~~~l~e~al~iL~nL----a~~~~~r~~i~~~~~I~~Lv~lL~~~s~~~~e~A~ 671 (732)
|+..|.. -|++..|+.+| . ....+++.+=+||.|+ +.+.+.|+.+.+++.+..|++.|++.+-.+.-|+|
T Consensus 472 NKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaC 551 (2195)
T KOG2122|consen 472 NKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNAC 551 (2195)
T ss_pred cchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecch
Confidence 9999998 79999999999 2 2446789999999987 45778899999999999999999999999999999
Q ss_pred HHHHHHhcCChHhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHhhccccCC
Q 004761 672 SILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFRNQREGS 726 (732)
Q Consensus 672 ~~L~~L~~~~~~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~~~~~~ 726 (732)
++||||...+++.++.+++.|+++.|..|+.+.+....+-++..|++|-++|+..
T Consensus 552 GTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~RPAk 606 (2195)
T KOG2122|consen 552 GTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFRPAK 606 (2195)
T ss_pred hhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCCchh
Confidence 9999999999999999999999999999999999988889999999998888543
|
|
| >KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.2e-14 Score=163.66 Aligned_cols=279 Identities=26% Similarity=0.280 Sum_probs=224.9
Q ss_pred CchHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcC---Cch
Q 004761 444 TPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSIN---DEN 520 (732)
Q Consensus 444 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~---~~~ 520 (732)
...++..+.+|.+.++..|-.|...|..+++.+.+.+..+.+.|+|+.||.+|.+.+.+++.+|+.+|.||... +.|
T Consensus 232 d~~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~N 311 (717)
T KOG1048|consen 232 DPTLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSN 311 (717)
T ss_pred ccccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCccc
Confidence 45578999999999999999999999999999999999999999999999999999999999999999999875 358
Q ss_pred HHHHHHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCC--------------CHHH
Q 004761 521 KAMIAEAGAIEPLIHVLKS-GNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSG--------------TLRG 585 (732)
Q Consensus 521 k~~i~~~g~l~~Lv~lL~~-~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~--------------~~~~ 585 (732)
+..|.+.++++.++++|+. ++.+++++.+++||||+.+|..|..|... ++..|.+-+-.. +..+
T Consensus 312 Klai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~~-al~tLt~~vI~P~Sgw~~~~~~~~~~~~~v 390 (717)
T KOG1048|consen 312 KLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIITS-ALSTLTDNVIIPHSGWEEEPAPRKAEDSTV 390 (717)
T ss_pred chhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHHH-HHHHHHHhhcccccccCCCCccccccccee
Confidence 9999999999999999986 78999999999999999998888777654 456665544311 2456
Q ss_pred HHHHHHHHHHhcc-CchhHHHHHh-hchHHHHHHhc-------CCChHHHHHHHHHHHHHhCChh-----h-H-------
Q 004761 586 RKDAATALFNLSI-FHENKARIIQ-AGAVKHLVDLM-------DPSTGMVDKAVALLANLSTVGE-----G-R------- 643 (732)
Q Consensus 586 ~~~Al~aL~nLs~-~~~n~~~lv~-~G~V~~Ll~lL-------~~~~~l~e~al~iL~nLa~~~~-----~-r------- 643 (732)
...+..+|.|++. ..+.|.+|.+ .|.|..|+.++ ..+...+++|+.+|.||.-.-+ . +
T Consensus 391 f~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~ 470 (717)
T KOG1048|consen 391 FRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIA 470 (717)
T ss_pred eehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhccc
Confidence 7889999999998 6778999988 79999999887 3466789999999999964211 0 0
Q ss_pred -------------------HHHH---------H----cCc-----HHHHHH----HH-hcCCHHHHHHHHHHHHHHhcCC
Q 004761 644 -------------------LAIA---------R----EGG-----IPSLVE----VV-ESGSQRGKENAASILLQLCLHS 681 (732)
Q Consensus 644 -------------------~~i~---------~----~~~-----I~~Lv~----lL-~~~s~~~~e~A~~~L~~L~~~~ 681 (732)
..+. + ..| -+.+++ +| .+..+.+.|.++.+|-||+..+
T Consensus 471 ~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~ 550 (717)
T KOG1048|consen 471 RLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGL 550 (717)
T ss_pred ccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccC
Confidence 0000 0 001 123333 23 3456788999999999999864
Q ss_pred h----HhHHHH-HhCCCHHHHHHchhcCChHHHHHHHHHHHHhhccc
Q 004761 682 P----KFCTLV-LQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFRNQR 723 (732)
Q Consensus 682 ~----~~~~~v-~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~~~ 723 (732)
. ..+..+ .++.+.+.|+.+++++++++.+.++.+|++|+...
T Consensus 551 ~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~ 597 (717)
T KOG1048|consen 551 WTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDI 597 (717)
T ss_pred CcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCc
Confidence 3 344445 56889999999999999999999999999996543
|
|
| >KOG4199 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.6e-13 Score=137.31 Aligned_cols=278 Identities=17% Similarity=0.244 Sum_probs=231.0
Q ss_pred HHHHHHHhc--CCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcc-CCHHHHHHHHHHHHHhhcCCch---
Q 004761 447 VKKLIEDLN--STSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYS-EAQLTQEHAVTALLNLSINDEN--- 520 (732)
Q Consensus 447 i~~Lv~~L~--s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s-~~~~v~~~A~~~L~nLs~~~~~--- 520 (732)
...++..|. ..+.+.....+..++.-+-.++.||..+.+.+..+.+...|.. +...+...+.+++.-|..+++.
T Consensus 147 ~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~ 226 (461)
T KOG4199|consen 147 MAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVV 226 (461)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeee
Confidence 455666664 4456667778888888888888999999999999999977764 3346888888888888776542
Q ss_pred -------HHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCCCH----HHHHH
Q 004761 521 -------KAMIAEAGAIEPLIHVLKSG-NGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTL----RGRKD 588 (732)
Q Consensus 521 -------k~~i~~~g~l~~Lv~lL~~~-~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~----~~~~~ 588 (732)
...|+..|++..|++.|+.+ ++.....+..+|..|+..++.+..|.+.|++..|+.++.+.+. ...+.
T Consensus 227 fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~ 306 (461)
T KOG4199|consen 227 FGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKT 306 (461)
T ss_pred cchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHH
Confidence 46777888999999999876 5888889999999999999999999999999999999987442 34567
Q ss_pred HHHHHHHhccCchhHHHHHhhchHHHHHHhc---CCChHHHHHHHHHHHHHh-CChhhHHHHHHcCcHHHHHHHHhcC--
Q 004761 589 AATALFNLSIFHENKARIIQAGAVKHLVDLM---DPSTGMVDKAVALLANLS-TVGEGRLAIAREGGIPSLVEVVESG-- 662 (732)
Q Consensus 589 Al~aL~nLs~~~~n~~~lv~~G~V~~Ll~lL---~~~~~l~e~al~iL~nLa-~~~~~r~~i~~~~~I~~Lv~lL~~~-- 662 (732)
++..|..|+.++.++..+|+.|+.+.++.++ ..++.+.+.++.++.-|| +.|+.-..+++.|+-...++-|+..
T Consensus 307 ~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~ 386 (461)
T KOG4199|consen 307 CLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPV 386 (461)
T ss_pred HHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcH
Confidence 8888999999999999999999999999998 678999999999999996 5677778889999988889988763
Q ss_pred CHHHHHHHHHHHHHHhcCChHhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHh------hccccC
Q 004761 663 SQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHF------RNQREG 725 (732)
Q Consensus 663 s~~~~e~A~~~L~~L~~~~~~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l------~~~~~~ 725 (732)
...++.+|++.+.|+..++.+++..++..| ++.|+......++.....|..+|+-| |+.|.|
T Consensus 387 ~a~vQrnac~~IRNiv~rs~~~~~~~l~~G-iE~Li~~A~~~h~tce~~akaALRDLGc~v~lre~wtg 454 (461)
T KOG4199|consen 387 AAQVQRNACNMIRNIVVRSAENRTILLANG-IEKLIRTAKANHETCEAAAKAALRDLGCDVYLREEWTG 454 (461)
T ss_pred HHHHHHHHHHHHHHHHHhhhhccchHHhcc-HHHHHHHHHhcCccHHHHHHHHHHhcCcchhhHHHhcc
Confidence 456899999999999998888888888876 78888888887777777777788755 666655
|
|
| >KOG4199 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.4e-12 Score=133.03 Aligned_cols=265 Identities=18% Similarity=0.261 Sum_probs=222.2
Q ss_pred HhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhc--cCCHHHHHHHHHHHHHhhc-CCchHHHHHHcCC
Q 004761 453 DLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLY--SEAQLTQEHAVTALLNLSI-NDENKAMIAEAGA 529 (732)
Q Consensus 453 ~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~--s~~~~v~~~A~~~L~nLs~-~~~~k~~i~~~g~ 529 (732)
.-.+++.....+++..|..+....+. +.++.+...++.+|. .++.++....+..+..-+. ++.||+.+++.++
T Consensus 115 la~~~~~~~l~ksL~al~~lt~~qpd----l~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~i 190 (461)
T KOG4199|consen 115 LAESPNESVLKKSLEAINSLTHKQPD----LFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKI 190 (461)
T ss_pred HhhCCchhHHHHHHHHHHHhhcCCcc----hhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhH
Confidence 34466677778999999999877664 456788899999985 4567788888888877665 5789999999999
Q ss_pred HHHHHHHHcCC-CHHHHHHHHHHHHHhccCchh----------HHHHHhcchHHHHHHhhcCC-CHHHHHHHHHHHHHhc
Q 004761 530 IEPLIHVLKSG-NGGAKENSAAALFSLSVLEEY----------KAKIGRSGAVKALVDLLGSG-TLRGRKDAATALFNLS 597 (732)
Q Consensus 530 l~~Lv~lL~~~-~~e~~~~Aa~~L~~Ls~~~~~----------k~~i~~~g~i~~Lv~lL~~~-~~~~~~~Al~aL~nLs 597 (732)
++.+...|... ...+...+.+++..|...++. ...|...|++..|++.++.+ +|.....++.+|..|+
T Consensus 191 l~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lA 270 (461)
T KOG4199|consen 191 LELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALA 270 (461)
T ss_pred HHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHH
Confidence 99999777654 455777888999988776553 35566678889999999865 6888999999999999
Q ss_pred cCchhHHHHHhhchHHHHHHhc-CC----ChHHHHHHHHHHHHHhCChhhHHHHHHcCcHHHHHHHHh--cCCHHHHHHH
Q 004761 598 IFHENKARIIQAGAVKHLVDLM-DP----STGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVE--SGSQRGKENA 670 (732)
Q Consensus 598 ~~~~n~~~lv~~G~V~~Ll~lL-~~----~~~l~e~al~iL~nLa~~~~~r~~i~~~~~I~~Lv~lL~--~~s~~~~e~A 670 (732)
..++.+..+.+.|++..|++++ +. ...+...++.+|..|+.....+..|++.||.+.++.++. ..+|.+.+.+
T Consensus 271 Vr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~ 350 (461)
T KOG4199|consen 271 VRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEV 350 (461)
T ss_pred HHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHH
Confidence 9999999999999999999999 32 234677899999999999999999999999999999874 4689999999
Q ss_pred HHHHHHHhcCChHhHHHHHhCCCHHHHHHchhcCC--hHHHHHHHHHHHHhhc
Q 004761 671 ASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGT--PRAKEKAQQLLSHFRN 721 (732)
Q Consensus 671 ~~~L~~L~~~~~~~~~~v~~~G~i~~L~~Ll~~g~--~~~k~kA~~lL~~l~~ 721 (732)
+.++.-||-..|++...+++.|+-...++-+.... ..+++.|.++++++-.
T Consensus 351 ~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~ 403 (461)
T KOG4199|consen 351 MAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVV 403 (461)
T ss_pred HHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999888888765 4688999999999843
|
|
| >KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures] | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.8e-13 Score=151.73 Aligned_cols=278 Identities=23% Similarity=0.251 Sum_probs=221.9
Q ss_pred CchHHHHHHHhcCCCHHHHHHHHHHHHHHhccChh--hHHHHHhcCCHHHHHHhhcc-CCHHHHHHHHHHHHHhhcCCch
Q 004761 444 TPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNME--NRMIIGNCGAIPPLLSLLYS-EAQLTQEHAVTALLNLSINDEN 520 (732)
Q Consensus 444 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~--~r~~i~~~G~I~~Lv~lL~s-~~~~v~~~A~~~L~nLs~~~~~ 520 (732)
-+.|+.||.+|.+.+.++++.|+.+|++|...... |+..|.+.++|+.++.+|+. .|.++++....+|+||+.++..
T Consensus 274 lggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~l 353 (717)
T KOG1048|consen 274 LGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDAL 353 (717)
T ss_pred hccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHH
Confidence 56689999999999999999999999999976655 99999999999999999986 7999999999999999998777
Q ss_pred HHHHHHcCCHHHHHHHHcCC--------------CHHHHHHHHHHHHHhcc-CchhHHHHHhc-chHHHHHHhhcC----
Q 004761 521 KAMIAEAGAIEPLIHVLKSG--------------NGGAKENSAAALFSLSV-LEEYKAKIGRS-GAVKALVDLLGS---- 580 (732)
Q Consensus 521 k~~i~~~g~l~~Lv~lL~~~--------------~~e~~~~Aa~~L~~Ls~-~~~~k~~i~~~-g~i~~Lv~lL~~---- 580 (732)
+..++.. ++..|..-+-.+ ..++-.+++++|.|++. ..+.+..+.+. |.|..|+.++++
T Consensus 354 K~~ii~~-al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~ 432 (717)
T KOG1048|consen 354 KMLIITS-ALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQK 432 (717)
T ss_pred HHHHHHH-HHHHHHHhhcccccccCCCCcccccccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHh
Confidence 7766643 566666544221 13466789999999987 66778888876 888888877651
Q ss_pred --CCHHH-------------------------------------------------------------------------
Q 004761 581 --GTLRG------------------------------------------------------------------------- 585 (732)
Q Consensus 581 --~~~~~------------------------------------------------------------------------- 585 (732)
.+...
T Consensus 433 ~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e 512 (717)
T KOG1048|consen 433 SDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSE 512 (717)
T ss_pred ccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccccccCCCcccccccccchhhhchhcccccCCcccccCCCCce
Confidence 12222
Q ss_pred -----------------------HHHHHHHHHHhccCch-----hHHHH-HhhchHHHHHHhc-CCChHHHHHHHHHHHH
Q 004761 586 -----------------------RKDAATALFNLSIFHE-----NKARI-IQAGAVKHLVDLM-DPSTGMVDKAVALLAN 635 (732)
Q Consensus 586 -----------------------~~~Al~aL~nLs~~~~-----n~~~l-v~~G~V~~Ll~lL-~~~~~l~e~al~iL~n 635 (732)
.++++.||.||+.... .+..+ .+..+.++|+++| ..+..++..++++|.|
T Consensus 513 ~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrN 592 (717)
T KOG1048|consen 513 WLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRN 592 (717)
T ss_pred eeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhh
Confidence 3455556666654321 22222 4556678888888 7788889999999999
Q ss_pred HhCChhhHHHHHHcCcHHHHHHHHhcC------CHHHHHHHHHHHHHHhcCChHhHHHHHhCCCHHHHHHchhcCC-hHH
Q 004761 636 LSTVGEGRLAIAREGGIPSLVEVVESG------SQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGT-PRA 708 (732)
Q Consensus 636 La~~~~~r~~i~~~~~I~~Lv~lL~~~------s~~~~e~A~~~L~~L~~~~~~~~~~v~~~G~i~~L~~Ll~~g~-~~~ 708 (732)
|+.+...+..|. ..+++-|+..|..+ +.+..-.++.+|+++...+..+...+.+.+++++|+.+..+.. +++
T Consensus 593 ls~d~rnk~lig-k~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~~nAkdl~~~~g~~kL~~I~~s~~S~k~ 671 (717)
T KOG1048|consen 593 LSRDIRNKELIG-KYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNVLNAKDLLEIKGIPKLRLISKSQHSPKE 671 (717)
T ss_pred hccCchhhhhhh-cchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHhHHHHHHHHhccChHHHHHHhcccCCHHH
Confidence 999998888877 57899999999653 3677888999999999989999999999999999999999864 688
Q ss_pred HHHHHHHHHHhhccc
Q 004761 709 KEKAQQLLSHFRNQR 723 (732)
Q Consensus 709 k~kA~~lL~~l~~~~ 723 (732)
-+.|..+|..|+.++
T Consensus 672 ~kaAs~vL~~lW~y~ 686 (717)
T KOG1048|consen 672 FKAASSVLDVLWQYK 686 (717)
T ss_pred HHHHHHHHHHHHHHH
Confidence 899999998887654
|
|
| >PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.2e-12 Score=131.56 Aligned_cols=191 Identities=26% Similarity=0.284 Sum_probs=169.4
Q ss_pred CchHHHHHHHhcC-CCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCchHH
Q 004761 444 TPYVKKLIEDLNS-TSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKA 522 (732)
Q Consensus 444 ~~~i~~Lv~~L~s-~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k~ 522 (732)
.+.++.|+..|+. .++.++..|+..+.+.+.. +.++..+.+.|+++.+..+|.++++.+++.|+.+|.|++.+.+|+.
T Consensus 11 ~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf-~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~ 89 (254)
T PF04826_consen 11 AQELQKLLCLLESTEDPFIQEKALIALGNSAAF-PFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQE 89 (254)
T ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHhhccC-hhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHH
Confidence 4567999999984 5789999999999998754 5899999999999999999999999999999999999999999988
Q ss_pred HHHHcCCHHHHHHHHcCC--CHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhccCc
Q 004761 523 MIAEAGAIEPLIHVLKSG--NGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFH 600 (732)
Q Consensus 523 ~i~~~g~l~~Lv~lL~~~--~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~ 600 (732)
.+-. +++.+++...+. +.+.+..++.+|.+|+..+++...+.. .++.++.+|..|+..++..++++|.|||.++
T Consensus 90 ~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~--~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np 165 (254)
T PF04826_consen 90 QIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLAN--YIPDLLSLLSSGSEKTKVQVLKVLVNLSENP 165 (254)
T ss_pred HHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHh--hHHHHHHHHHcCChHHHHHHHHHHHHhccCH
Confidence 7743 577777765554 578889999999999998888777754 6899999999999999999999999999999
Q ss_pred hhHHHHHhhchHHHHHHhc--CCChHHHHHHHHHHHHHhCC
Q 004761 601 ENKARIIQAGAVKHLVDLM--DPSTGMVDKAVALLANLSTV 639 (732)
Q Consensus 601 ~n~~~lv~~G~V~~Ll~lL--~~~~~l~e~al~iL~nLa~~ 639 (732)
.+...++.++++..++.++ +.+..+...++.++.|+..+
T Consensus 166 ~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~ 206 (254)
T PF04826_consen 166 DMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINEN 206 (254)
T ss_pred HHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence 9999999999999999999 45788899999999999654
|
|
| >PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.5e-11 Score=123.92 Aligned_cols=196 Identities=20% Similarity=0.258 Sum_probs=171.1
Q ss_pred HHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhccCchhH
Q 004761 525 AEAGAIEPLIHVLKS-GNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFHENK 603 (732)
Q Consensus 525 ~~~g~l~~Lv~lL~~-~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~n~ 603 (732)
.+++.++.|+.+|+. .++.+++.|..++.+.+..+.++..|.+.|+++.+..+|.++++.+++.|+.+|.|++...+|+
T Consensus 9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~ 88 (254)
T PF04826_consen 9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQ 88 (254)
T ss_pred cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhH
Confidence 466779999999995 4799999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHhhchHHHHHHhc---CCChHHHHHHHHHHHHHhCChhhHHHHHHcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhcC
Q 004761 604 ARIIQAGAVKHLVDLM---DPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCLH 680 (732)
Q Consensus 604 ~~lv~~G~V~~Ll~lL---~~~~~l~e~al~iL~nLa~~~~~r~~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~ 680 (732)
..+-. .++.+.+.+ ..+..++..++.+|.||+...+.+..+.. .++.++.++.+|+..++.+++.+|++|+.
T Consensus 89 ~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~--~i~~ll~LL~~G~~~~k~~vLk~L~nLS~- 163 (254)
T PF04826_consen 89 EQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLAN--YIPDLLSLLSSGSEKTKVQVLKVLVNLSE- 163 (254)
T ss_pred HHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHh--hHHHHHHHHHcCChHHHHHHHHHHHHhcc-
Confidence 87643 566666665 23678889999999999988887777654 69999999999999999999999999999
Q ss_pred ChHhHHHHHhCCCHHHHHHchhcCC-hHHHHHHHHHHHHhhccccC
Q 004761 681 SPKFCTLVLQEGAVPPLVGLSQSGT-PRAKEKAQQLLSHFRNQREG 725 (732)
Q Consensus 681 ~~~~~~~v~~~G~i~~L~~Ll~~g~-~~~k~kA~~lL~~l~~~~~~ 725 (732)
++.....++..+++..++.|++... ...-..+..+..++.+.+..
T Consensus 164 np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~ 209 (254)
T PF04826_consen 164 NPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKK 209 (254)
T ss_pred CHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCc
Confidence 7888899999999999999999875 56677888888888665543
|
|
| >PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.5e-10 Score=130.14 Aligned_cols=275 Identities=17% Similarity=0.199 Sum_probs=222.3
Q ss_pred CchHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCchHHH
Q 004761 444 TPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAM 523 (732)
Q Consensus 444 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k~~ 523 (732)
....+.|...|.++++.++..+++.|+.++.++......+.+.+.++.++.++.+++..+...|..+|.+++..+.....
T Consensus 76 ~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~ 155 (503)
T PF10508_consen 76 PQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQ 155 (503)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHH
Confidence 45668899999999999999999999999988876677777889999999999999999999999999999988877777
Q ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccC-chhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhccCchh
Q 004761 524 IAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVL-EEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFHEN 602 (732)
Q Consensus 524 i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~-~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~n 602 (732)
+...+.+..|..++...+..+|..+..++.+++.. ++....+...|+++.++..|++++.-++.+|+..|..|+..+.+
T Consensus 156 l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g 235 (503)
T PF10508_consen 156 LFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHG 235 (503)
T ss_pred HhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhH
Confidence 88888899999999888888999999999999865 45566667779999999999998889999999999999999999
Q ss_pred HHHHHhhchHHHHHHhc-C--CCh---H-HHHHHHHHHHHHhCChhhHHHHHH-cCcHHHHHHHHhcCCHHHHHHHHHHH
Q 004761 603 KARIIQAGAVKHLVDLM-D--PST---G-MVDKAVALLANLSTVGEGRLAIAR-EGGIPSLVEVVESGSQRGKENAASIL 674 (732)
Q Consensus 603 ~~~lv~~G~V~~Ll~lL-~--~~~---~-l~e~al~iL~nLa~~~~~r~~i~~-~~~I~~Lv~lL~~~s~~~~e~A~~~L 674 (732)
...+.+.|+++.|..++ + .++ . +.-..+...++++....... +.. ...+..+..++.+.++..+..|+.++
T Consensus 236 ~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v-~~~~p~~~~~l~~~~~s~d~~~~~~A~dtl 314 (503)
T PF10508_consen 236 LQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEV-LELYPAFLERLFSMLESQDPTIREVAFDTL 314 (503)
T ss_pred HHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHH-HHHHHHHHHHHHHHhCCCChhHHHHHHHHH
Confidence 99999999999999999 2 222 2 23334467778877422211 111 23456666777888999999999999
Q ss_pred HHHhcCChHhHHHH-HhCC-----CHHHHHHchhcCChHHHHHHHHHHHHhh
Q 004761 675 LQLCLHSPKFCTLV-LQEG-----AVPPLVGLSQSGTPRAKEKAQQLLSHFR 720 (732)
Q Consensus 675 ~~L~~~~~~~~~~v-~~~G-----~i~~L~~Ll~~g~~~~k~kA~~lL~~l~ 720 (732)
..+|. +.+....+ ...| ++........+++...|.++..+|..+=
T Consensus 315 g~igs-t~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il 365 (503)
T PF10508_consen 315 GQIGS-TVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASIL 365 (503)
T ss_pred HHHhC-CHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence 99997 55666656 3332 3555566666777888999988888873
|
26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding |
| >KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.36 E-value=7.6e-12 Score=146.05 Aligned_cols=225 Identities=24% Similarity=0.286 Sum_probs=194.0
Q ss_pred HHHHHHHHHHHHHHhccChhhHHHHHhc-CCHHHHHHhhccCCHHHHHHHHHHHHHhhcC-Cch-HHHHHHcCCHHHHHH
Q 004761 459 NEIQASAAAELRLLAKHNMENRMIIGNC-GAIPPLLSLLYSEAQLTQEHAVTALLNLSIN-DEN-KAMIAEAGAIEPLIH 535 (732)
Q Consensus 459 ~~~~~~Al~~L~~La~~~~~~r~~i~~~-G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~-~~~-k~~i~~~g~l~~Lv~ 535 (732)
...++.|..+|.+|+..+..|+..++.. |++..+|..|.+...+++.....+|.||++. +.| +..+-+.|.+..|+.
T Consensus 365 ~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~ 444 (2195)
T KOG2122|consen 365 NALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAA 444 (2195)
T ss_pred HHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHH
Confidence 3567889999999999999999888864 9999999999998889999899999999986 444 666668899999886
Q ss_pred H-HcCCCHHHHHHHHHHHHHhccC-chhHHHHHhc-chHHHHHHhhcCC----CHHHHHHHHHHHHHhccC----chhHH
Q 004761 536 V-LKSGNGGAKENSAAALFSLSVL-EEYKAKIGRS-GAVKALVDLLGSG----TLRGRKDAATALFNLSIF----HENKA 604 (732)
Q Consensus 536 l-L~~~~~e~~~~Aa~~L~~Ls~~-~~~k~~i~~~-g~i~~Lv~lL~~~----~~~~~~~Al~aL~nLs~~----~~n~~ 604 (732)
. |+..........+.+||||+.+ .+||..|..- |++..||.+|... ...+.+.|-.+|.|.+++ .+.|.
T Consensus 445 ~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQ 524 (2195)
T KOG2122|consen 445 CALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQ 524 (2195)
T ss_pred HHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHH
Confidence 4 5555666778899999999885 4889988876 9999999999864 467888999999998774 45677
Q ss_pred HHHhhchHHHHHHhc-CCChHHHHHHHHHHHHH-hCChhhHHHHHHcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCh
Q 004761 605 RIIQAGAVKHLVDLM-DPSTGMVDKAVALLANL-STVGEGRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCLHSP 682 (732)
Q Consensus 605 ~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nL-a~~~~~r~~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~ 682 (732)
.+.+.+++..|+..| +.+-.++.+++++|||| +++++.++.+++.|+++.|..++++.+....+-++.+|.||..+.|
T Consensus 525 ILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~RP 604 (2195)
T KOG2122|consen 525 ILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFRP 604 (2195)
T ss_pred HHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCCc
Confidence 788899999999999 77788899999999999 6788899999999999999999999999999999999999998764
Q ss_pred H
Q 004761 683 K 683 (732)
Q Consensus 683 ~ 683 (732)
.
T Consensus 605 A 605 (2195)
T KOG2122|consen 605 A 605 (2195)
T ss_pred h
Confidence 3
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.30 E-value=4.5e-11 Score=117.36 Aligned_cols=77 Identities=36% Similarity=0.546 Sum_probs=72.7
Q ss_pred CCCCCCCccccccCcccCCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHcCC
Q 004761 232 SGVPIPPYFRCPLSLELMIDPVIVASGQTYERVFIQKWLDHGLNICPKTRQTLAHTNLIPNYTVKAMIENWCEENNL 308 (732)
Q Consensus 232 ~~~~~p~~f~Cpi~~~lm~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn~~l~~~i~~~~~~~~~ 308 (732)
...++|+.++|.|++++|+|||+.++|.||+|..|..+++.-+...|+|+.+|+...++||++|+..|..|...|++
T Consensus 204 k~rEvpd~lcgkIt~el~~~pvi~psgIty~ra~I~Ehl~rvghfdpvtr~~Lte~q~ipN~alkevIa~fl~~n~w 280 (284)
T KOG4642|consen 204 KKREVPDYLCGKITLELMREPVITPSGITYDRADIEEHLQRVGHFDPVTRWPLTEYQLIPNLALKEVIAAFLKENEW 280 (284)
T ss_pred ccccccchhhhhhhHHhhcCCccCccccchhHHHHHHHHHHhccCCchhcccCCHHhhccchHHHHHHHHHHHhccc
Confidence 34579999999999999999999999999999999999998668899999999999999999999999999999976
|
|
| >COG5113 UFD2 Ubiquitin fusion degradation protein 2 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.1e-11 Score=131.19 Aligned_cols=123 Identities=22% Similarity=0.235 Sum_probs=94.6
Q ss_pred CCCCcCchHHHH---HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhhhhhcCC
Q 004761 157 QDDTIRCTDHLV---KIIESLGLTSNQELLKESLAVEMERIRAERNQNKGHSDQMNYIVDLISHIRDCMLKIERFEATSG 233 (732)
Q Consensus 157 ~~~~~~~~~~~~---~i~~~~~l~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (732)
.|+++++.+.|. +|.++..|.++..+ +|+..+-...|+.+..+...+++ -
T Consensus 796 ~D~rsf~~~~F~rA~~I~~~k~L~s~~~I-E~l~~f~nr~E~~r~~ea~EeED--------------------------~ 848 (929)
T COG5113 796 SDKRSFDIDFFRRALRICENKYLISESQI-EELRSFINRLEKVRVIEAVEEED--------------------------M 848 (929)
T ss_pred cccccccHHHHHHHHHHHhccccCCHHHH-HHHHHHHHHHHHHHHHHhhhhhh--------------------------c
Confidence 377788888887 44555567776666 55555555444443322222222 2
Q ss_pred CCCCCccccccCcccCCCceecC-CCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHcC
Q 004761 234 VPIPPYFRCPLSLELMIDPVIVA-SGQTYERVFIQKWLDHGLNICPKTRQTLAHTNLIPNYTVKAMIENWCEENN 307 (732)
Q Consensus 234 ~~~p~~f~Cpi~~~lm~dPV~~~-~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn~~l~~~i~~~~~~~~ 307 (732)
-++|++|..|++..+|+|||+++ +|.|.||+.|..++..+ .|+|+.|.||+.++++||-.||+.|-.|....+
T Consensus 849 GDvPDeFlDPLmftimkdPV~Lp~S~i~IDRSTikahllsd-~tDPFNRmPLtlddVtpn~eLrekIn~f~k~k~ 922 (929)
T COG5113 849 GDVPDEFLDPLMFTIMKDPVKLPTSRITIDRSTIKAHLLSD-GTDPFNRMPLTLDDVTPNAELREKINRFYKCKG 922 (929)
T ss_pred cCCchhhhCchhhhcccCCeecccccccccHHHHHHHHhcC-CCCccccCCCchhhcCCCHHHHHHHHHHHhccc
Confidence 35999999999999999999986 89999999999999887 799999999999999999999999999865443
|
|
| >KOG2042 consensus Ubiquitin fusion degradation protein-2 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.17 E-value=5.1e-11 Score=138.16 Aligned_cols=72 Identities=33% Similarity=0.469 Sum_probs=67.8
Q ss_pred CCCCccccccCcccCCCceecC-CCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHcC
Q 004761 235 PIPPYFRCPLSLELMIDPVIVA-SGQTYERVFIQKWLDHGLNICPKTRQTLAHTNLIPNYTVKAMIENWCEENN 307 (732)
Q Consensus 235 ~~p~~f~Cpi~~~lm~dPV~~~-~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn~~l~~~i~~~~~~~~ 307 (732)
++|++|..||+..+|+|||++| +|+|.||+.|++|+..+ .+.|+||++|+.+.++||.+||..|+.|...+.
T Consensus 866 dvpdef~DPlm~Tlm~dPV~LP~Srv~vDRsti~rhlLs~-~tdPFNR~pLt~d~v~pn~eLK~kI~~~~~ek~ 938 (943)
T KOG2042|consen 866 DVPDEFLDPLMSTLMSDPVVLPSSRVTVDRSTIERHLLSD-CTDPFNREPLTEDMVSPNEELKAKIRCWIKEKR 938 (943)
T ss_pred cCchhhhCccccccCCCCccCCcccccccHHHHHHHHhcC-CCCccccccCchhhcCCCHHHHHHHHHHHHHhh
Confidence 4999999999999999999998 99999999999999987 789999999999999999999999999977653
|
|
| >cd00020 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.3e-09 Score=97.35 Aligned_cols=116 Identities=34% Similarity=0.393 Sum_probs=105.7
Q ss_pred HHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcC-CchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCc-h
Q 004761 483 IGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSIN-DENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLE-E 560 (732)
Q Consensus 483 i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~-~~~k~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~-~ 560 (732)
+.+.|+++.|+.+|.+.+..++..++.+|.+++.+ +.....+.+.|+++.++.+|.++++.++..++++|.+|+... .
T Consensus 3 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~ 82 (120)
T cd00020 3 VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPED 82 (120)
T ss_pred HHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHH
Confidence 56789999999999999999999999999999987 677888888999999999999999999999999999999876 4
Q ss_pred hHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhcc
Q 004761 561 YKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSI 598 (732)
Q Consensus 561 ~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~ 598 (732)
....+...|+++.|++++.+.+...++.|+.+|.||+.
T Consensus 83 ~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 83 NKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 45666777999999999999999999999999999873
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. |
| >PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A | Back alignment and domain information |
|---|
Probab=99.07 E-value=7.9e-11 Score=86.10 Aligned_cols=39 Identities=28% Similarity=0.688 Sum_probs=31.2
Q ss_pred cccCcccCCCceecCCCcccchHHHHHHHhcCC---CCCCCC
Q 004761 242 CPLSLELMIDPVIVASGQTYERVFIQKWLDHGL---NICPKT 280 (732)
Q Consensus 242 Cpi~~~lm~dPV~~~~g~ty~r~~I~~~~~~~~---~~cP~~ 280 (732)
||||+++|+|||+++|||+||+.||.+|+.... ..||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 899999999999999999999999999997542 369986
|
|
| >cd00020 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.7e-09 Score=95.97 Aligned_cols=116 Identities=29% Similarity=0.401 Sum_probs=107.3
Q ss_pred HHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCC-hhhHHHHHHcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCh
Q 004761 605 RIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTV-GEGRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCLHSP 682 (732)
Q Consensus 605 ~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~-~~~r~~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~ 682 (732)
.+++.|+++.|++++ +.+..++..++.+|.+++.. ++.+..+.+.|+++.+++++.+.++..+..|+++|.+++.+.+
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~ 81 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE 81 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH
Confidence 467899999999999 77789999999999999987 7788888999999999999999999999999999999999887
Q ss_pred HhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHhh
Q 004761 683 KFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFR 720 (732)
Q Consensus 683 ~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~ 720 (732)
.....+.+.|+++.|..+++.++.++++.|..+|.++.
T Consensus 82 ~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 82 DNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 88888899999999999999999999999999998874
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. |
| >PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=8e-11 Score=113.38 Aligned_cols=60 Identities=27% Similarity=0.540 Sum_probs=53.0
Q ss_pred CCCCCccccccCcccCCCceecCCCcccchHHHHHHHhc---------------CCCCCCCCCCCCCCCCCcccH
Q 004761 234 VPIPPYFRCPLSLELMIDPVIVASGQTYERVFIQKWLDH---------------GLNICPKTRQTLAHTNLIPNY 293 (732)
Q Consensus 234 ~~~p~~f~Cpi~~~lm~dPV~~~~g~ty~r~~I~~~~~~---------------~~~~cP~~~~~l~~~~l~pn~ 293 (732)
.+..++|.||||++.++|||+++|||.||+.||.+|+.. +...||.|+.+++...++|.+
T Consensus 13 ~~~~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiy 87 (193)
T PLN03208 13 VDSGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIY 87 (193)
T ss_pred ccCCCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEee
Confidence 345678999999999999999999999999999999852 235799999999999999986
|
|
| >PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.1e-08 Score=113.06 Aligned_cols=273 Identities=16% Similarity=0.153 Sum_probs=210.6
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCch-HHHHHHc
Q 004761 449 KLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDEN-KAMIAEA 527 (732)
Q Consensus 449 ~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~-k~~i~~~ 527 (732)
.++..|...+.+....++..|..+.... ..... ..+..+.|...|.++++.++..++..|.++..+... ...+.+.
T Consensus 42 ~lf~~L~~~~~e~v~~~~~iL~~~l~~~-~~~~l--~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~ 118 (503)
T PF10508_consen 42 VLFDCLNTSNREQVELICDILKRLLSAL-SPDSL--LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDN 118 (503)
T ss_pred HHHHHHhhcChHHHHHHHHHHHHHHhcc-CHHHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCc
Confidence 3788888888777778888888887543 22222 347788999999999999999999999999887665 4445578
Q ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhccCch-hHHHH
Q 004761 528 GAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFHE-NKARI 606 (732)
Q Consensus 528 g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~-n~~~l 606 (732)
+.++.++..|.+++.++...|+.+|..++.....-..+...+.+..|..++...+..++..+..++.+++...+ ....+
T Consensus 119 ~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~ 198 (503)
T PF10508_consen 119 ELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAV 198 (503)
T ss_pred cHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 99999999999999999999999999999988877778788889999999988777888889999999987654 55566
Q ss_pred HhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCChhhHHHHHHcCcHHHHHHHHhcC--CH-HH---HHHHHHHHHHHhc
Q 004761 607 IQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVESG--SQ-RG---KENAASILLQLCL 679 (732)
Q Consensus 607 v~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~~r~~i~~~~~I~~Lv~lL~~~--s~-~~---~e~A~~~L~~L~~ 679 (732)
...|+++.++..| +++.-++..++.+|..|+..+.|..-+.+.|.++.|+.++... ++ -. --..+....++..
T Consensus 199 ~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~ 278 (503)
T PF10508_consen 199 VNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLAR 278 (503)
T ss_pred HhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHh
Confidence 7799999999999 6666778899999999999999999999999999999999653 33 11 1112233334444
Q ss_pred CChHhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHhhccccC
Q 004761 680 HSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFRNQREG 725 (732)
Q Consensus 680 ~~~~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~~~~~ 725 (732)
.++....... ...+..|..+++++++..+..|...|..+....+|
T Consensus 279 ~~~~~v~~~~-p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G 323 (503)
T PF10508_consen 279 VSPQEVLELY-PAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEG 323 (503)
T ss_pred cChHHHHHHH-HHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHH
Confidence 3332221111 23456677788888888888898888888655444
|
26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding |
| >KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.05 E-value=8.8e-09 Score=109.71 Aligned_cols=254 Identities=17% Similarity=0.213 Sum_probs=204.1
Q ss_pred CchHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCchHHH
Q 004761 444 TPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAM 523 (732)
Q Consensus 444 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k~~ 523 (732)
...|..||+.|...+.+........|..|+--. +|+..+.+.|.|..|++++-..+++++...+..|.||+.+..++..
T Consensus 303 kniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~-eNK~~M~~~~iveKL~klfp~~h~dL~~~tl~LlfNlSFD~glr~K 381 (791)
T KOG1222|consen 303 KNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFD-ENKIVMEQNGIVEKLLKLFPIQHPDLRKATLMLLFNLSFDSGLRPK 381 (791)
T ss_pred HhHHHHHHHHHcccchHHHHHHHHHHHHhhhhc-cchHHHHhccHHHHHHHhcCCCCHHHHHHHHHHhhhccccccccHH
Confidence 567889999999988888888888999988554 8999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCCC-HHHHHHHHHHHHHhccCchh
Q 004761 524 IAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGT-LRGRKDAATALFNLSIFHEN 602 (732)
Q Consensus 524 i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~-~~~~~~Al~aL~nLs~~~~n 602 (732)
|+..|.+|.++.+|.+... ...|...|+.++.+++.|..+.-..+|+.+.+.+-.+. .++-.+.+....|||.+..|
T Consensus 382 Mv~~GllP~l~~ll~~d~~--~~iA~~~lYh~S~dD~~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnkRN 459 (791)
T KOG1222|consen 382 MVNGGLLPHLASLLDSDTK--HGIALNMLYHLSCDDDAKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNKRN 459 (791)
T ss_pred HhhccchHHHHHHhCCccc--chhhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhcccc
Confidence 9999999999999986542 34688889999999999999999999999998766543 44444444445699999999
Q ss_pred HHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCChh-hHHHHHHcCcHHHHHHHHhcC-CHHHHHHHHHHHHHHhc
Q 004761 603 KARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGE-GRLAIAREGGIPSLVEVVESG-SQRGKENAASILLQLCL 679 (732)
Q Consensus 603 ~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~-~r~~i~~~~~I~~Lv~lL~~~-s~~~~e~A~~~L~~L~~ 679 (732)
...+++-.++..|++.- ..... ....++.|++.+.. .+..+++ -+..|..++... ++.---.|.++|.+|..
T Consensus 460 aQlvceGqgL~~LM~ra~k~~D~---lLmK~vRniSqHeg~tqn~Fid--yvgdLa~i~~nd~~E~F~~EClGtlanL~v 534 (791)
T KOG1222|consen 460 AQLVCEGQGLDLLMERAIKSRDL---LLMKVVRNISQHEGATQNMFID--YVGDLAGIAKNDNSESFGLECLGTLANLKV 534 (791)
T ss_pred ceEEecCcchHHHHHHHhcccch---HHHHHHHHhhhccchHHHHHHH--HHHHHHHHhhcCchHHHHHHHHHHHhhccc
Confidence 88888877888887765 22211 23567888988775 3455554 356666666543 44556678899999988
Q ss_pred CChHhHHHHHhCCCHHHHHHchhcCC
Q 004761 680 HSPKFCTLVLQEGAVPPLVGLSQSGT 705 (732)
Q Consensus 680 ~~~~~~~~v~~~G~i~~L~~Ll~~g~ 705 (732)
.+-.+...+-+...+|.+-..++.|-
T Consensus 535 ~dldw~~ilq~~~LvPw~k~~L~pga 560 (791)
T KOG1222|consen 535 TDLDWAKILQSENLVPWMKTQLQPGA 560 (791)
T ss_pred CCCCHHHHHhhccccHHHHHhhcCCc
Confidence 77788888888999999888887763
|
|
| >KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.04 E-value=2e-08 Score=106.09 Aligned_cols=279 Identities=15% Similarity=0.158 Sum_probs=209.0
Q ss_pred CchHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcc----C---CHHHHHHHHHHHHHhhc
Q 004761 444 TPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYS----E---AQLTQEHAVTALLNLSI 516 (732)
Q Consensus 444 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s----~---~~~v~~~A~~~L~nLs~ 516 (732)
.+.++.|.+...|++.++-.+..++|.+++..+.++|..+.+.||-..++..|+. + +.+....+...|.|-..
T Consensus 86 a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l 165 (604)
T KOG4500|consen 86 AEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYIL 165 (604)
T ss_pred HHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhC
Confidence 4556777788888888888999999999999999999999999998888887763 2 24566777788999877
Q ss_pred C-CchHHHHHHcCCHHHHHHHHcCC--C--------------------------------------------HHHHHHHH
Q 004761 517 N-DENKAMIAEAGAIEPLIHVLKSG--N--------------------------------------------GGAKENSA 549 (732)
Q Consensus 517 ~-~~~k~~i~~~g~l~~Lv~lL~~~--~--------------------------------------------~e~~~~Aa 549 (732)
+ +..+.++++.|+++.|...+.-+ + ++.++...
T Consensus 166 ~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~f 245 (604)
T KOG4500|consen 166 DSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIF 245 (604)
T ss_pred CcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHH
Confidence 6 45588888999998776655322 1 11222333
Q ss_pred HHHHHhccCchhHHHHHhcchHHHHHHhhcCC-CHHHH-------HHHHHHHHHhccCchhHHHHHhhc-hHHHHHHhc-
Q 004761 550 AALFSLSVLEEYKAKIGRSGAVKALVDLLGSG-TLRGR-------KDAATALFNLSIFHENKARIIQAG-AVKHLVDLM- 619 (732)
Q Consensus 550 ~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~-~~~~~-------~~Al~aL~nLs~~~~n~~~lv~~G-~V~~Ll~lL- 619 (732)
.+|...+.++..|-.++..|.+..++++++.. +..-+ +.++....-|...++.-..+...| .++.+..++
T Consensus 246 eila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~sw~~ 325 (604)
T KOG4500|consen 246 EILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDFLESWFR 325 (604)
T ss_pred HHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHHHhc
Confidence 44444555555666677778888888888752 22122 223333333444556666666666 888888888
Q ss_pred CCChHHHHHHHHHHHHHhCChhhHHHHHHcCcHHHHHHHHhc-----CCHHHHHHHHHHHHHHhcCChHhHHHHHhCCCH
Q 004761 620 DPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVES-----GSQRGKENAASILLQLCLHSPKFCTLVLQEGAV 694 (732)
Q Consensus 620 ~~~~~l~e~al~iL~nLa~~~~~r~~i~~~~~I~~Lv~lL~~-----~s~~~~e~A~~~L~~L~~~~~~~~~~v~~~G~i 694 (732)
+.+..+...+.-+++|+++..+....+++.+.+..|+..+.. |+-+.+..++++|.++.. ...+...++.+|+.
T Consensus 326 S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~I-Pv~nka~~~~aGvt 404 (604)
T KOG4500|consen 326 SDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMI-PVSNKAHFAPAGVT 404 (604)
T ss_pred CCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccc-cCCchhhccccchH
Confidence 778888888889999999999999999999999999997743 567788889999999987 34466788899999
Q ss_pred HHHHHchhcCChHHHHHHHHHHHHhhccc
Q 004761 695 PPLVGLSQSGTPRAKEKAQQLLSHFRNQR 723 (732)
Q Consensus 695 ~~L~~Ll~~g~~~~k~kA~~lL~~l~~~~ 723 (732)
+.++..+....|.+.-|-...|++++...
T Consensus 405 eaIL~~lk~~~ppv~fkllgTlrM~~d~q 433 (604)
T KOG4500|consen 405 EAILLQLKLASPPVTFKLLGTLRMIRDSQ 433 (604)
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHhch
Confidence 99999999998888888888888876643
|
|
| >cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments | Back alignment and domain information |
|---|
Probab=99.02 E-value=6.6e-08 Score=106.04 Aligned_cols=273 Identities=17% Similarity=0.092 Sum_probs=201.9
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccC-CHHHHHHHHHHHHHhhcCCchHHHHH
Q 004761 447 VKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSE-AQLTQEHAVTALLNLSINDENKAMIA 525 (732)
Q Consensus 447 i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~-~~~v~~~A~~~L~nLs~~~~~k~~i~ 525 (732)
...++..|..++.-++..|+..|..+...+..+.......-.+..|...|++. +...+..|+.+|.+|-..+..|..+.
T Consensus 103 ~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~ 182 (429)
T cd00256 103 WEPFFNLLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFV 182 (429)
T ss_pred hHHHHHHHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHH
Confidence 35566788888888999999999999866543211111011233455556543 57788889999999999999999999
Q ss_pred HcCCHHHHHHHHcCC--CHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCCC-HHHHHHHHHHHHHhccCc--
Q 004761 526 EAGAIEPLIHVLKSG--NGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGT-LRGRKDAATALFNLSIFH-- 600 (732)
Q Consensus 526 ~~g~l~~Lv~lL~~~--~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~-~~~~~~Al~aL~nLs~~~-- 600 (732)
+.+++++|+.+|+.. +.....+++-++|-|+..++........+.|+.|+++++... ..+.+-++.+|.||...+
T Consensus 183 ~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~ 262 (429)
T cd00256 183 LADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVD 262 (429)
T ss_pred HccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccc
Confidence 888999999999864 468899999999999998886666666799999999999754 678999999999998843
Q ss_pred -----hhHHHHHhhchHHHHHHhc---CCChHHHHHHHHH-------HHHHhCC------------------------hh
Q 004761 601 -----ENKARIIQAGAVKHLVDLM---DPSTGMVDKAVAL-------LANLSTV------------------------GE 641 (732)
Q Consensus 601 -----~n~~~lv~~G~V~~Ll~lL---~~~~~l~e~al~i-------L~nLa~~------------------------~~ 641 (732)
.....|+..|+.+.+-.+. -.++++.+..-.+ +..+++. .+
T Consensus 263 ~~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~E 342 (429)
T cd00256 263 REVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRE 342 (429)
T ss_pred cchhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHH
Confidence 2345678778776555554 2355544332221 1222221 12
Q ss_pred hHHHHHHcC--cHHHHHHHHh-cCCHHHHHHHHHHHHHHhcCChHhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHH
Q 004761 642 GRLAIAREG--GIPSLVEVVE-SGSQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSH 718 (732)
Q Consensus 642 ~r~~i~~~~--~I~~Lv~lL~-~~s~~~~e~A~~~L~~L~~~~~~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~ 718 (732)
+...+.+.+ .+..|+++|. +.++....-||.=+..++++-|..+..+-+.|+=..++.++.+.++++|..|..+++-
T Consensus 343 N~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQk 422 (429)
T cd00256 343 NADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQK 422 (429)
T ss_pred HHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 233444444 3788999985 4567777788888999999888888888899999999999999999999999988876
Q ss_pred h
Q 004761 719 F 719 (732)
Q Consensus 719 l 719 (732)
|
T Consensus 423 l 423 (429)
T cd00256 423 L 423 (429)
T ss_pred H
Confidence 5
|
The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example. |
| >KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.2e-08 Score=108.70 Aligned_cols=196 Identities=23% Similarity=0.276 Sum_probs=161.8
Q ss_pred HHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcC
Q 004761 501 QLTQEHAVTALLNLSINDENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGS 580 (732)
Q Consensus 501 ~~v~~~A~~~L~nLs~~~~~k~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~ 580 (732)
..+...|+..|.||+.+-.....|.....+..|+..|...+.+........|..|+..++||..+++.|.+..|+.++..
T Consensus 277 eqLLrva~ylLlNlAed~~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp~ 356 (791)
T KOG1222|consen 277 EQLLRVAVYLLLNLAEDISVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFPI 356 (791)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcCC
Confidence 45667889999999988777778888889999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhccCchhHHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCChhhHHHHHHcCcHHHHHHHH
Q 004761 581 GTLRGRKDAATALFNLSIFHENKARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVV 659 (732)
Q Consensus 581 ~~~~~~~~Al~aL~nLs~~~~n~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~~r~~i~~~~~I~~Lv~lL 659 (732)
.++..++..+..++||+....++.+|+..|.+|.|..+| +... ..-|+.+|..++.....+..+.-+++|+.+.+.+
T Consensus 357 ~h~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d~~--~~iA~~~lYh~S~dD~~K~MfayTdci~~lmk~v 434 (791)
T KOG1222|consen 357 QHPDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSDTK--HGIALNMLYHLSCDDDAKAMFAYTDCIKLLMKDV 434 (791)
T ss_pred CCHHHHHHHHHHhhhccccccccHHHhhccchHHHHHHhCCccc--chhhhhhhhhhccCcHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999 3221 2448889999999888888888899999999976
Q ss_pred hcCC-HHHHHHHHHHHHHHhcCChHhHHHHHhCCCHHHHHH
Q 004761 660 ESGS-QRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVG 699 (732)
Q Consensus 660 ~~~s-~~~~e~A~~~L~~L~~~~~~~~~~v~~~G~i~~L~~ 699 (732)
-.++ .++....++...|+|. +..+.+.+.+-.++..|+.
T Consensus 435 ~~~~~~~vdl~lia~ciNl~l-nkRNaQlvceGqgL~~LM~ 474 (791)
T KOG1222|consen 435 LSGTGSEVDLALIALCINLCL-NKRNAQLVCEGQGLDLLME 474 (791)
T ss_pred HhcCCceecHHHHHHHHHHHh-ccccceEEecCcchHHHHH
Confidence 5543 3444444555578887 3445555555444444443
|
|
| >TIGR00599 rad18 DNA repair protein rad18 | Back alignment and domain information |
|---|
Probab=98.97 E-value=6.4e-10 Score=119.99 Aligned_cols=69 Identities=20% Similarity=0.432 Sum_probs=63.3
Q ss_pred CCCccccccCcccCCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHH
Q 004761 236 IPPYFRCPLSLELMIDPVIVASGQTYERVFIQKWLDHGLNICPKTRQTLAHTNLIPNYTVKAMIENWCEE 305 (732)
Q Consensus 236 ~p~~f~Cpi~~~lm~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn~~l~~~i~~~~~~ 305 (732)
+...|.||||+++|.+||+++|||+||..||..|+... ..||.|+.++....+.+|+.|.++|+.|...
T Consensus 23 Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~~-~~CP~Cr~~~~~~~Lr~N~~L~~iVe~~~~~ 91 (397)
T TIGR00599 23 LDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSNQ-PKCPLCRAEDQESKLRSNWLVSEIVESFKNL 91 (397)
T ss_pred cccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhCC-CCCCCCCCccccccCccchHHHHHHHHHHHh
Confidence 55789999999999999999999999999999999864 5899999999888999999999999999653
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.4e-07 Score=99.40 Aligned_cols=233 Identities=15% Similarity=0.068 Sum_probs=146.0
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCchHHHHHH
Q 004761 447 VKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAMIAE 526 (732)
Q Consensus 447 i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k~~i~~ 526 (732)
+..|++.|.+.+..++..|+..|..+.. ...++.+..++.++++.++..|+++|..|...+.. .
T Consensus 25 ~~~L~~~L~d~d~~vR~~A~~aL~~~~~-----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~-----~ 88 (280)
T PRK09687 25 DDELFRLLDDHNSLKRISSIRVLQLRGG-----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC-----Q 88 (280)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcCc-----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc-----h
Confidence 6889999999999999999999887652 24567788888999999999999999988543221 1
Q ss_pred cCCHHHHHHH-HcCCCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhccCchhHHH
Q 004761 527 AGAIEPLIHV-LKSGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFHENKAR 605 (732)
Q Consensus 527 ~g~l~~Lv~l-L~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~n~~~ 605 (732)
...++.|..+ +++.++.++..|+.+|.++....... ...+++.+...+.+.++.++..|+.+|..+.
T Consensus 89 ~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~-------- 156 (280)
T PRK09687 89 DNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFDKSTNVRFAVAFALSVIN-------- 156 (280)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhCCCHHHHHHHHHHHhccC--------
Confidence 2356777766 66778899999999998875322100 1123455555666666677777777765432
Q ss_pred HHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCChhhHHHHHHcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhc-----
Q 004761 606 IIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCL----- 679 (732)
Q Consensus 606 lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~~r~~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~----- 679 (732)
...+++.|+.+| +++..+...|+..|+.+....+ .+++.|+..+.+.++.++..|+..|..+-.
T Consensus 157 --~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~--------~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~~~av~ 226 (280)
T PRK09687 157 --DEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP--------DIREAFVAMLQDKNEEIRIEAIIGLALRKDKRVLS 226 (280)
T ss_pred --CHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH--------HHHHHHHHHhcCCChHHHHHHHHHHHccCChhHHH
Confidence 123566666666 5566666666666666522111 234445555555555555555555442111
Q ss_pred ------CChHhHHHHH----hC---CCHHHHHHchh-cCChHHHHHHHHHHH
Q 004761 680 ------HSPKFCTLVL----QE---GAVPPLVGLSQ-SGTPRAKEKAQQLLS 717 (732)
Q Consensus 680 ------~~~~~~~~v~----~~---G~i~~L~~Ll~-~g~~~~k~kA~~lL~ 717 (732)
.++.....++ +. -++|.|..+++ ..+++++++|.+.|+
T Consensus 227 ~Li~~L~~~~~~~~a~~ALg~ig~~~a~p~L~~l~~~~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 227 VLIKELKKGTVGDLIIEAAGELGDKTLLPVLDTLLYKFDDNEIITKAIDKLK 278 (280)
T ss_pred HHHHHHcCCchHHHHHHHHHhcCCHhHHHHHHHHHhhCCChhHHHHHHHHHh
Confidence 0011111111 11 25788888886 667888888888775
|
|
| >PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.6e-07 Score=100.97 Aligned_cols=219 Identities=19% Similarity=0.194 Sum_probs=162.6
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhc------CCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCchHH
Q 004761 449 KLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNC------GAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKA 522 (732)
Q Consensus 449 ~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~------G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k~ 522 (732)
.+++.+ +.+++.....+..+..+...++.....+... ....++++++.++|..++..|+.+|..|......+.
T Consensus 62 ~lL~~~-~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~ 140 (312)
T PF03224_consen 62 NLLNKL-SSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRS 140 (312)
T ss_dssp HHHHHH----HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--
T ss_pred HHHHHc-cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccc
Confidence 444444 4678888999999999998887666555541 257788888889999999999999999976544333
Q ss_pred HHHHcCCHHHHHHHHcCC----CHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhh-----cC--CCHHHHHHHHH
Q 004761 523 MIAEAGAIEPLIHVLKSG----NGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLL-----GS--GTLRGRKDAAT 591 (732)
Q Consensus 523 ~i~~~g~l~~Lv~lL~~~----~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL-----~~--~~~~~~~~Al~ 591 (732)
.-...+.++.++..|.+. +.+.+..++.+|.+|...+.+|..+...++++.++.++ .. .+.+....++.
T Consensus 141 ~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll 220 (312)
T PF03224_consen 141 EKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALL 220 (312)
T ss_dssp HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHH
Confidence 322255678888887752 34566889999999999999999999999999999999 22 24778899999
Q ss_pred HHHHhccCchhHHHHHhhchHHHHHHhc--CCChHHHHHHHHHHHHHhCChh--hHHHHHHcCcHHHHHHHHhc--CCHH
Q 004761 592 ALFNLSIFHENKARIIQAGAVKHLVDLM--DPSTGMVDKAVALLANLSTVGE--GRLAIAREGGIPSLVEVVES--GSQR 665 (732)
Q Consensus 592 aL~nLs~~~~n~~~lv~~G~V~~Ll~lL--~~~~~l~e~al~iL~nLa~~~~--~r~~i~~~~~I~~Lv~lL~~--~s~~ 665 (732)
+++-|+.+++....+...++|+.|++++ .....++.-++++|.||+.... ....|+..|+++.+-.+... ++++
T Consensus 221 ~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~rk~~Ded 300 (312)
T PF03224_consen 221 CLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSERKWSDED 300 (312)
T ss_dssp HHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHSS--SSHH
T ss_pred HHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhcCCCCCHH
Confidence 9999999999999999999999999999 6778899999999999988776 77788887666666655543 4555
Q ss_pred HHH
Q 004761 666 GKE 668 (732)
Q Consensus 666 ~~e 668 (732)
..+
T Consensus 301 l~e 303 (312)
T PF03224_consen 301 LTE 303 (312)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
|
ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A. |
| >KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.6e-07 Score=99.31 Aligned_cols=278 Identities=17% Similarity=0.123 Sum_probs=205.9
Q ss_pred cCchHHHHHHHhcCC-CHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcc-CC-------HHHHHHHHHHHHH
Q 004761 443 TTPYVKKLIEDLNST-SNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYS-EA-------QLTQEHAVTALLN 513 (732)
Q Consensus 443 ~~~~i~~Lv~~L~s~-~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s-~~-------~~v~~~A~~~L~n 513 (732)
+...+..+++.|.+. +++...-....+...+ ++...+-.+++.|.+.-++.+++. .+ ......++....-
T Consensus 221 d~sl~~~l~~ll~~~v~~d~~eM~feila~~a-end~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vl 299 (604)
T KOG4500|consen 221 DCSLVFMLLQLLPSMVREDIDEMIFEILAKAA-ENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVL 299 (604)
T ss_pred cchHHHHHHHHHHHhhccchhhHHHHHHHHHh-cCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhh
Confidence 355667788887653 3444445555666666 455778888999999999998875 22 1223334444444
Q ss_pred hhcCCchHHHHHHcC-CHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhc-----CCCHHHHH
Q 004761 514 LSINDENKAMIAEAG-AIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLG-----SGTLRGRK 587 (732)
Q Consensus 514 Ls~~~~~k~~i~~~g-~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~-----~~~~~~~~ 587 (732)
|...++....+...+ .++.++..+.+.+....-.++-+|.|++..+++...+++.|.+..|+++|. +++.+.+.
T Consensus 300 lltGDeSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qh 379 (604)
T KOG4500|consen 300 LLTGDESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQH 379 (604)
T ss_pred hhcCchHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHH
Confidence 555666666666555 899999999999999999999999999999999999999999999999885 35788999
Q ss_pred HHHHHHHHhccCchhHHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCChh-hHHHHHHcC-cHHHHHHHHhcCCH
Q 004761 588 DAATALFNLSIFHENKARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGE-GRLAIAREG-GIPSLVEVVESGSQ 664 (732)
Q Consensus 588 ~Al~aL~nLs~~~~n~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~-~r~~i~~~~-~I~~Lv~lL~~~s~ 664 (732)
+++.||.||...-.|+..++.+|+++.++.++ ...+.++..-++.|.-+....+ ...++.+.. .+..|+..-++.+.
T Consensus 380 A~lsALRnl~IPv~nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~D~ 459 (604)
T KOG4500|consen 380 ACLSALRNLMIPVSNKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWSKSPDF 459 (604)
T ss_pred HHHHHHHhccccCCchhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhCCcc
Confidence 99999999999999999999999999999999 6677788888888887765444 223333332 36666666666544
Q ss_pred H-HHHHHHHHHHHHhcC--ChHhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHhhc
Q 004761 665 R-GKENAASILLQLCLH--SPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFRN 721 (732)
Q Consensus 665 ~-~~e~A~~~L~~L~~~--~~~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~ 721 (732)
. +.-..-..|..+.++ ..+....+.+.|++..++.++..++-..+..|.-+|..+..
T Consensus 460 aGv~gESnRll~~lIkHs~~kdv~~tvpksg~ik~~Vsm~t~~hi~mqnEalVal~~~~~ 519 (604)
T KOG4500|consen 460 AGVAGESNRLLLGLIKHSKYKDVILTVPKSGGIKEKVSMFTKNHINMQNEALVALLSTES 519 (604)
T ss_pred chhhhhhhHHHHHHHHhhHhhhhHhhccccccHHHHHHHHHHhhHHHhHHHHHHHHHHHH
Confidence 3 455566777777776 33455667788999999999988877777777766665543
|
|
| >PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.5e-07 Score=101.10 Aligned_cols=228 Identities=20% Similarity=0.168 Sum_probs=164.6
Q ss_pred CHHHHHHhhcc--CCHHHHHHHHHHHHHhhcCCch-HHHHHH------cCCHHHHHHHHcCCCHHHHHHHHHHHHHhccC
Q 004761 488 AIPPLLSLLYS--EAQLTQEHAVTALLNLSINDEN-KAMIAE------AGAIEPLIHVLKSGNGGAKENSAAALFSLSVL 558 (732)
Q Consensus 488 ~I~~Lv~lL~s--~~~~v~~~A~~~L~nLs~~~~~-k~~i~~------~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~ 558 (732)
....++.+|+. ++.++....+..+..+..++.. ...+.. ...+.+++.++.+++.-+...|+.+|..|...
T Consensus 56 ~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~ 135 (312)
T PF03224_consen 56 YASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQ 135 (312)
T ss_dssp ------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHc
Confidence 45666677653 6889999999999998766544 444433 23688999999999999999999999999876
Q ss_pred chhHHHHHhcchHHHHHHhhcCC----CHHHHHHHHHHHHHhccCchhHHHHHhhchHHHHHHhc------CC--ChHHH
Q 004761 559 EEYKAKIGRSGAVKALVDLLGSG----TLRGRKDAATALFNLSIFHENKARIIQAGAVKHLVDLM------DP--STGMV 626 (732)
Q Consensus 559 ~~~k~~i~~~g~i~~Lv~lL~~~----~~~~~~~Al~aL~nLs~~~~n~~~lv~~G~V~~Ll~lL------~~--~~~l~ 626 (732)
...+..-...+.++.+++++++. +......|+.+|.+|...++.|..+.+.|+++.+..++ +. ...+.
T Consensus 136 ~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~ 215 (312)
T PF03224_consen 136 GPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQ 215 (312)
T ss_dssp TTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HHHHH
T ss_pred CCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHH
Confidence 65555444466788888888752 34556889999999999999999999999999999999 12 23456
Q ss_pred HHHHHHHHHHhCChhhHHHHHHcCcHHHHHHHHhc-CCHHHHHHHHHHHHHHhcCChH-hHHHHHhCCCHHHHHHchhcC
Q 004761 627 DKAVALLANLSTVGEGRLAIAREGGIPSLVEVVES-GSQRGKENAASILLQLCLHSPK-FCTLVLQEGAVPPLVGLSQSG 704 (732)
Q Consensus 627 e~al~iL~nLa~~~~~r~~i~~~~~I~~Lv~lL~~-~s~~~~e~A~~~L~~L~~~~~~-~~~~v~~~G~i~~L~~Ll~~g 704 (732)
-.++-+++.|+..++....+.+.+.|+.|+++++. ..+++..-++++|.|++..+++ ....++..|+++.|-.|....
T Consensus 216 Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~rk 295 (312)
T PF03224_consen 216 YQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSERK 295 (312)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHSS-
T ss_pred HHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhcCC
Confidence 78999999999999999999988899999999976 4677888899999999987654 777778888777777766653
Q ss_pred --ChHHHHHHHHH
Q 004761 705 --TPRAKEKAQQL 715 (732)
Q Consensus 705 --~~~~k~kA~~l 715 (732)
+++..+--..+
T Consensus 296 ~~Dedl~edl~~L 308 (312)
T PF03224_consen 296 WSDEDLTEDLEFL 308 (312)
T ss_dssp -SSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 56666554443
|
ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A. |
| >PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.3e-09 Score=85.09 Aligned_cols=44 Identities=30% Similarity=0.666 Sum_probs=31.8
Q ss_pred CccccccCcccCCCceec-CCCcccchHHHHHHHhc-CCCCCCCCC
Q 004761 238 PYFRCPLSLELMIDPVIV-ASGQTYERVFIQKWLDH-GLNICPKTR 281 (732)
Q Consensus 238 ~~f~Cpi~~~lm~dPV~~-~~g~ty~r~~I~~~~~~-~~~~cP~~~ 281 (732)
-.|.||||+..|+|||.- .|||+|||++|..|+.. +...||+.|
T Consensus 10 ~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv~G 55 (57)
T PF11789_consen 10 ISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPVAG 55 (57)
T ss_dssp --SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SCCC
T ss_pred eccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCCCC
Confidence 468999999999999984 89999999999999943 446799976
|
|
| >KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.8e-07 Score=106.03 Aligned_cols=257 Identities=19% Similarity=0.137 Sum_probs=197.5
Q ss_pred CchHHHHHHHhcCC-CHHHHHHHHHHHHHHhc-cChhhHHHHHhcCCHHHHHHhhccC-CHHHHHHHHHHHHHhhcC-Cc
Q 004761 444 TPYVKKLIEDLNST-SNEIQASAAAELRLLAK-HNMENRMIIGNCGAIPPLLSLLYSE-AQLTQEHAVTALLNLSIN-DE 519 (732)
Q Consensus 444 ~~~i~~Lv~~L~s~-~~~~~~~Al~~L~~La~-~~~~~r~~i~~~G~I~~Lv~lL~s~-~~~v~~~A~~~L~nLs~~-~~ 519 (732)
.+.+.+|++.|... ++..|.+|+.+|+.+.. .+++.-.-+--.-.+|.|+.+|++. +.+++-.|+++|.+|+.. +.
T Consensus 166 sSk~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~ 245 (1051)
T KOG0168|consen 166 SSKAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPR 245 (1051)
T ss_pred hHHHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccc
Confidence 44678899999876 78888999999987653 3333222222336899999999874 799999999999999864 67
Q ss_pred hHHHHHHcCCHHHHHHHHc-CCCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhcc
Q 004761 520 NKAMIAEAGAIEPLIHVLK-SGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSI 598 (732)
Q Consensus 520 ~k~~i~~~g~l~~Lv~lL~-~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~ 598 (732)
....+++.++++.|+.-|. -...++.+.++-+|..++... -..|...|++-..+.+|.--+..+++.|+.+..|+|.
T Consensus 246 S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H--~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Ck 323 (1051)
T KOG0168|consen 246 SSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRH--PKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCK 323 (1051)
T ss_pred hhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhc--cHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7777889999999996554 456889999999999998633 3556778999999998887778899999999999997
Q ss_pred C--chhHHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhC----ChhhHHHHHHcCcHHHHHHHHhcC----CHHHH
Q 004761 599 F--HENKARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLST----VGEGRLAIAREGGIPSLVEVVESG----SQRGK 667 (732)
Q Consensus 599 ~--~~n~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~----~~~~r~~i~~~~~I~~Lv~lL~~~----s~~~~ 667 (732)
. ++.-..+. .++|.|..+| ..+...++.++-++..++. .++--+.+...|.|....+++.-. +..+.
T Consensus 324 si~sd~f~~v~--ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~ 401 (1051)
T KOG0168|consen 324 SIRSDEFHFVM--EALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTY 401 (1051)
T ss_pred cCCCccchHHH--HHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccch
Confidence 4 33333333 4899999999 6677778888877777754 233346677788888888887542 23345
Q ss_pred HHHHHHHHHHhcCChHhHHHHHhCCCHHHHHHchhcC
Q 004761 668 ENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSG 704 (732)
Q Consensus 668 e~A~~~L~~L~~~~~~~~~~v~~~G~i~~L~~Ll~~g 704 (732)
...+..|..+|.+++-....+.+.++...|..+++..
T Consensus 402 ~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~ 438 (1051)
T KOG0168|consen 402 TGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGY 438 (1051)
T ss_pred hHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhcc
Confidence 5677888888888899899999999999999998754
|
|
| >PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A | Back alignment and domain information |
|---|
Probab=98.72 E-value=7.8e-09 Score=74.62 Aligned_cols=38 Identities=32% Similarity=0.773 Sum_probs=33.3
Q ss_pred cccCcccCCCc-eecCCCcccchHHHHHHHhcCCCCCCCC
Q 004761 242 CPLSLELMIDP-VIVASGQTYERVFIQKWLDHGLNICPKT 280 (732)
Q Consensus 242 Cpi~~~lm~dP-V~~~~g~ty~r~~I~~~~~~~~~~cP~~ 280 (732)
|||+++.+.|| |+++|||+||+.||++|++. +..||.|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~-~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEK-NPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHC-TSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHC-cCCCcCC
Confidence 89999999999 57899999999999999998 5899986
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.6e-06 Score=91.31 Aligned_cols=165 Identities=18% Similarity=0.083 Sum_probs=128.1
Q ss_pred CCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHH
Q 004761 487 GAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIG 566 (732)
Q Consensus 487 G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~ 566 (732)
-.++.|..+|.+.+..++..|+.+|..+. ....++.+..+++++++..|..|+++|..|-..+..
T Consensus 23 ~~~~~L~~~L~d~d~~vR~~A~~aL~~~~----------~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~----- 87 (280)
T PRK09687 23 LNDDELFRLLDDHNSLKRISSIRVLQLRG----------GQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC----- 87 (280)
T ss_pred ccHHHHHHHHhCCCHHHHHHHHHHHHhcC----------cchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc-----
Confidence 35788999999999999999999997664 245678888899999999999999999998653321
Q ss_pred hcchHHHHHHh-hcCCCHHHHHHHHHHHHHhccCchhHHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCChhhHH
Q 004761 567 RSGAVKALVDL-LGSGTLRGRKDAATALFNLSIFHENKARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGEGRL 644 (732)
Q Consensus 567 ~~g~i~~Lv~l-L~~~~~~~~~~Al~aL~nLs~~~~n~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~~r~ 644 (732)
...+++.|..+ +++.++.++..|+.+|.+++....+. ...++..+...+ +++..++..++..|..+.
T Consensus 88 ~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~------- 156 (280)
T PRK09687 88 QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFDKSTNVRFAVAFALSVIN------- 156 (280)
T ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhCCCHHHHHHHHHHHhccC-------
Confidence 22467888877 67778999999999999996543221 122555666667 778888888888886542
Q ss_pred HHHHcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhcC
Q 004761 645 AIAREGGIPSLVEVVESGSQRGKENAASILLQLCLH 680 (732)
Q Consensus 645 ~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~ 680 (732)
...+++.|+.++.+.++.++..|+.+|..+...
T Consensus 157 ---~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~ 189 (280)
T PRK09687 157 ---DEAAIPLLINLLKDPNGDVRNWAAFALNSNKYD 189 (280)
T ss_pred ---CHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCC
Confidence 223789999999999999999999999987543
|
|
| >PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.4e-08 Score=73.04 Aligned_cols=36 Identities=25% Similarity=0.610 Sum_probs=23.4
Q ss_pred cccCcccCCC----ceecCCCcccchHHHHHHHhcC---CCCCC
Q 004761 242 CPLSLELMID----PVIVASGQTYERVFIQKWLDHG---LNICP 278 (732)
Q Consensus 242 Cpi~~~lm~d----PV~~~~g~ty~r~~I~~~~~~~---~~~cP 278 (732)
||||.+ |.+ |++++||||||+.||++++..+ ...||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 999999 999 9999999999999999999854 34577
|
|
| >KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.51 E-value=5.1e-05 Score=86.11 Aligned_cols=269 Identities=17% Similarity=0.194 Sum_probs=199.4
Q ss_pred CchHHHHHHHhcCC-CHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcc--CCHHHHHHHHHHHHHhhcCCc-
Q 004761 444 TPYVKKLIEDLNST-SNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYS--EAQLTQEHAVTALLNLSINDE- 519 (732)
Q Consensus 444 ~~~i~~Lv~~L~s~-~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s--~~~~v~~~A~~~L~nLs~~~~- 519 (732)
...|+.|+..+.+. -.+.++.|++.|..+++ ..|..++. -|+++|+..|.. .|+++...++.++.++...++
T Consensus 21 aETI~kLcDRvessTL~eDRR~A~rgLKa~sr---kYR~~Vga-~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~ 96 (970)
T KOG0946|consen 21 AETIEKLCDRVESSTLLEDRRDAVRGLKAFSR---KYREEVGA-QGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDS 96 (970)
T ss_pred HhHHHHHHHHHhhccchhhHHHHHHHHHHHHH---HHHHHHHH-cccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcc
Confidence 35689999988754 47889999999999996 46766664 568889999975 479999999999999866542
Q ss_pred ------hH----------HHHH-HcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccC--chhHHHHHhc-chHHHHHHhhc
Q 004761 520 ------NK----------AMIA-EAGAIEPLIHVLKSGNGGAKENSAAALFSLSVL--EEYKAKIGRS-GAVKALVDLLG 579 (732)
Q Consensus 520 ------~k----------~~i~-~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~--~~~k~~i~~~-g~i~~Lv~lL~ 579 (732)
.+ ..+. ..+.+..++..+...+..+|..+.-.|.++... .+.+..+... -+|..|+.+|+
T Consensus 97 ~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~ 176 (970)
T KOG0946|consen 97 PEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLR 176 (970)
T ss_pred hhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHh
Confidence 12 1222 467889999999999999999999999998664 3556666655 88999999999
Q ss_pred CCCHHHHHHHHHHHHHhccCchhHHHHHh-hchHHHHHHhc--C--CC-hHHHHHHHHHHHHHhCCh-hhHHHHHHcCcH
Q 004761 580 SGTLRGRKDAATALFNLSIFHENKARIIQ-AGAVKHLVDLM--D--PS-TGMVDKAVALLANLSTVG-EGRLAIAREGGI 652 (732)
Q Consensus 580 ~~~~~~~~~Al~aL~nLs~~~~n~~~lv~-~G~V~~Ll~lL--~--~~-~~l~e~al~iL~nLa~~~-~~r~~i~~~~~I 652 (732)
+....++-.|+..|..|+....+..++|. .++...|+.++ . .+ .-+++.|+.+|-||.... .++.-+.+.+-|
T Consensus 177 DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i 256 (970)
T KOG0946|consen 177 DSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYI 256 (970)
T ss_pred hhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccH
Confidence 98888999999999999998888887776 89999999999 2 12 357899999999998754 466666777789
Q ss_pred HHHHHHHhc---CCH-------H---HHHHHHHHHHHHhc-CCh-----HhHHHHHhCCCHHHHHHchhcCC-h-HHHHH
Q 004761 653 PSLVEVVES---GSQ-------R---GKENAASILLQLCL-HSP-----KFCTLVLQEGAVPPLVGLSQSGT-P-RAKEK 711 (732)
Q Consensus 653 ~~Lv~lL~~---~s~-------~---~~e~A~~~L~~L~~-~~~-----~~~~~v~~~G~i~~L~~Ll~~g~-~-~~k~k 711 (732)
|.|.++|.. ++. . ....|+.++..+.. +++ .++..+...+++..|+.++.+.. | .+...
T Consensus 257 ~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIlte 336 (970)
T KOG0946|consen 257 PRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILTE 336 (970)
T ss_pred HHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHH
Confidence 999988743 221 1 12334455554443 221 13346667899999999887763 3 44444
Q ss_pred HHHHH
Q 004761 712 AQQLL 716 (732)
Q Consensus 712 A~~lL 716 (732)
+.-.+
T Consensus 337 siitv 341 (970)
T KOG0946|consen 337 SIITV 341 (970)
T ss_pred HHHHH
Confidence 44333
|
|
| >KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.51 E-value=2.4e-05 Score=82.42 Aligned_cols=228 Identities=19% Similarity=0.210 Sum_probs=162.0
Q ss_pred CCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcC-CchHHHHHHcCCHHHHH
Q 004761 456 STSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSIN-DENKAMIAEAGAIEPLI 534 (732)
Q Consensus 456 s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~-~~~k~~i~~~g~l~~Lv 534 (732)
+.+.+.+..|+..|..++ ++..|-.-+...|+..+++.++.+.+..+++.|+++|...+.+ +..+..+++.|+++.|+
T Consensus 94 s~~le~ke~ald~Le~lv-e~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll 172 (342)
T KOG2160|consen 94 SVDLEDKEDALDNLEELV-EDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLL 172 (342)
T ss_pred cCCHHHHHHHHHHHHHHH-HhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHH
Confidence 456788899999999998 5568888999999999999999999999999999999999876 56788999999999999
Q ss_pred HHHcCCC-HHHHHHHHHHHHHhccCc-hhHHHHHhcchHHHHHHhhcC--CCHHHHHHHHHHHHHhccCch-hHHHHHhh
Q 004761 535 HVLKSGN-GGAKENSAAALFSLSVLE-EYKAKIGRSGAVKALVDLLGS--GTLRGRKDAATALFNLSIFHE-NKARIIQA 609 (732)
Q Consensus 535 ~lL~~~~-~e~~~~Aa~~L~~Ls~~~-~~k~~i~~~g~i~~Lv~lL~~--~~~~~~~~Al~aL~nLs~~~~-n~~~lv~~ 609 (732)
..|.+.+ .+++..|+.++.+|..+. .....+...++...|...|.+ .+...+..|+..+..|..... ....+...
T Consensus 173 ~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~ 252 (342)
T KOG2160|consen 173 KILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSL 252 (342)
T ss_pred HHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHh
Confidence 9998654 667799999999998754 445666666779999999998 468889999999999987544 33444445
Q ss_pred chHHHHHHhc-CCChHHHHHHHHHHHHHhCChhhHHHHHH-----cCcHHHHHHHHh-cCCHHHHHHHHHHHHHHhcCCh
Q 004761 610 GAVKHLVDLM-DPSTGMVDKAVALLANLSTVGEGRLAIAR-----EGGIPSLVEVVE-SGSQRGKENAASILLQLCLHSP 682 (732)
Q Consensus 610 G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~~r~~i~~-----~~~I~~Lv~lL~-~~s~~~~e~A~~~L~~L~~~~~ 682 (732)
|....+..+. ..+....+.++..+..+...-..+..+.. ...+....+.+. +.....+..-+.-++..|...+
T Consensus 253 ~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~~~~~~~~~~~~~l~e~l~~~~q~~~~~~~~~~e~~l~~~l~~~~~e~~ 332 (342)
T KOG2160|consen 253 GFQRVLENLISSLDFEVNEAALTALLSLLSELSTRKELFVSLLNLEELLKSLIQIISDHAALEEERQLVNSLWEICGEVP 332 (342)
T ss_pred hhhHHHHHHhhccchhhhHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccH
Confidence 6666666665 44555566666555444332211111111 112333333333 2233455556666777777554
Q ss_pred Hh
Q 004761 683 KF 684 (732)
Q Consensus 683 ~~ 684 (732)
..
T Consensus 333 ~~ 334 (342)
T KOG2160|consen 333 SI 334 (342)
T ss_pred HH
Confidence 43
|
|
| >PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.1e-07 Score=69.33 Aligned_cols=39 Identities=38% Similarity=0.890 Sum_probs=36.1
Q ss_pred cccCcccCCCce-ecCCCcccchHHHHHHHh-cCCCCCCCC
Q 004761 242 CPLSLELMIDPV-IVASGQTYERVFIQKWLD-HGLNICPKT 280 (732)
Q Consensus 242 Cpi~~~lm~dPV-~~~~g~ty~r~~I~~~~~-~~~~~cP~~ 280 (732)
|||+++.+.+|+ +++|||+||+.||.+|+. .+...||.|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999999999 899999999999999998 566789986
|
Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A .... |
| >KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.47 E-value=2e-05 Score=84.01 Aligned_cols=268 Identities=17% Similarity=0.116 Sum_probs=196.4
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHH----HHHHhhcc-CCHHHHHHHHHHHHHhhcCCchHH
Q 004761 448 KKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIP----PLLSLLYS-EAQLTQEHAVTALLNLSINDENKA 522 (732)
Q Consensus 448 ~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~----~Lv~lL~s-~~~~v~~~A~~~L~nLs~~~~~k~ 522 (732)
...+..|..++.-.+..+.+.+..++..+... .+.+... .|-..+.+ .+.....-|+++|..+...++.|-
T Consensus 117 ~~fl~ll~r~d~~iv~~~~~Ils~la~~g~~~----~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~ 192 (442)
T KOG2759|consen 117 LSFLNLLNRQDTFIVEMSFRILSKLACFGNCK----MELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRY 192 (442)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHHhcccc----ccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhh
Confidence 56778888888777777888888887554321 1111222 23334444 677788889999999999999999
Q ss_pred HHHHcCCHHHHHHHHc--CCCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCCC-HHHHHHHHHHHHHhccC
Q 004761 523 MIAEAGAIEPLIHVLK--SGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGT-LRGRKDAATALFNLSIF 599 (732)
Q Consensus 523 ~i~~~g~l~~Lv~lL~--~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~-~~~~~~Al~aL~nLs~~ 599 (732)
.+..++++..++..+- ..+...+....-+++-|+.++...+.+...+.|+.|.+++++.. ..+.+-.+.++.|+...
T Consensus 193 ~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k 272 (442)
T KOG2759|consen 193 AFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDK 272 (442)
T ss_pred eeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999998883 23578999999999999999888888866799999999999764 67888899999999887
Q ss_pred c-------hhHHHHHhhchHHHHHHhc---CCChHHHHHHHHHHH-------HHhCCh----------------------
Q 004761 600 H-------ENKARIIQAGAVKHLVDLM---DPSTGMVDKAVALLA-------NLSTVG---------------------- 640 (732)
Q Consensus 600 ~-------~n~~~lv~~G~V~~Ll~lL---~~~~~l~e~al~iL~-------nLa~~~---------------------- 640 (732)
+ +....|+..++.+.+-.+. -+++++.+..-.+-. .|++..
T Consensus 273 ~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~F 352 (442)
T KOG2759|consen 273 GPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKF 352 (442)
T ss_pred CchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccch
Confidence 6 3445666666666554444 345555443322222 223221
Q ss_pred --hhHHHHHHcC--cHHHHHHHHhcCC-HHHHHHHHHHHHHHhcCChHhHHHHHhCCCHHHHHHchhcCChHHHHHHHHH
Q 004761 641 --EGRLAIAREG--GIPSLVEVVESGS-QRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQL 715 (732)
Q Consensus 641 --~~r~~i~~~~--~I~~Lv~lL~~~s-~~~~e~A~~~L~~L~~~~~~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~l 715 (732)
++...+-+.+ .+..|+++|+..+ |..-.-|+.=+....++-|+....+.+.|+=..++.|+.+.++++|-.|..+
T Consensus 353 W~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALla 432 (442)
T KOG2759|consen 353 WRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLA 432 (442)
T ss_pred HHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHH
Confidence 2223333333 4788899998754 6677778888899999999999999999999999999999999999999887
Q ss_pred HHHh
Q 004761 716 LSHF 719 (732)
Q Consensus 716 L~~l 719 (732)
++.|
T Consensus 433 vQ~l 436 (442)
T KOG2759|consen 433 VQKL 436 (442)
T ss_pred HHHH
Confidence 7655
|
|
| >KOG2973 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.45 E-value=7.5e-05 Score=76.74 Aligned_cols=270 Identities=18% Similarity=0.176 Sum_probs=183.7
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHh-cCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCchHHHH
Q 004761 446 YVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGN-CGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAMI 524 (732)
Q Consensus 446 ~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~-~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k~~i 524 (732)
....+|++|.+.+|.++..|+..+-.++.. ..+..... .-.++.+..++...++ .+.|+++|.|++.++.-+..+
T Consensus 4 ~l~elv~ll~~~sP~v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~l 79 (353)
T KOG2973|consen 4 ELVELVELLHSLSPPVRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKKL 79 (353)
T ss_pred HHHHHHHHhccCChHHHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHHH
Confidence 356799999999999999999888888765 23332222 2467778888876666 788999999999998888877
Q ss_pred HHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHHh-------cchHHHHHHhhcCC-CH-HHHHHHHHHHHH
Q 004761 525 AEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGR-------SGAVKALVDLLGSG-TL-RGRKDAATALFN 595 (732)
Q Consensus 525 ~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~-------~g~i~~Lv~lL~~~-~~-~~~~~Al~aL~n 595 (732)
+.. .++.+++.+-+........++.+|.||+..++....+.. .|.+.....+.+.+ +. .-...-+..+.|
T Consensus 80 l~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~n 158 (353)
T KOG2973|consen 80 LQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFAN 158 (353)
T ss_pred HHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHH
Confidence 776 788888888877666677888899999987765444331 34555555555543 21 234456678889
Q ss_pred hccCchhHHHHHhhchHHH--HHHhcCCChHHH-HHHHHHHHHHhCChhhHHHHHHcC--cHHHHH--------------
Q 004761 596 LSIFHENKARIIQAGAVKH--LVDLMDPSTGMV-DKAVALLANLSTVGEGRLAIAREG--GIPSLV-------------- 656 (732)
Q Consensus 596 Ls~~~~n~~~lv~~G~V~~--Ll~lL~~~~~l~-e~al~iL~nLa~~~~~r~~i~~~~--~I~~Lv-------------- 656 (732)
|+.....|..+.....++. ++.+-+.+..++ ...+++|.|.|........+...+ .+|.|+
T Consensus 159 ls~~~~gR~l~~~~k~~p~~kll~ft~~~s~vRr~GvagtlkN~cFd~~~h~~lL~e~~~lLp~iLlPlagpee~sEEdm 238 (353)
T KOG2973|consen 159 LSQFEAGRKLLLEPKRFPDQKLLPFTSEDSQVRRGGVAGTLKNCCFDAKLHEVLLDESINLLPAILLPLAGPEELSEEDM 238 (353)
T ss_pred HhhhhhhhhHhcchhhhhHhhhhcccccchhhhccchHHHHHhhhccchhHHHHhcchHHHHHHHHhhcCCccccCHHHH
Confidence 9999988888777553322 222223233332 346788888888766665555421 122222
Q ss_pred -------HHHh-----cCCHHHHHHHHHHHHHHhcCChHhHHHHHhCCCHHHHHHchhcC-ChHHHHHHHHHHHHhhc
Q 004761 657 -------EVVE-----SGSQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSG-TPRAKEKAQQLLSHFRN 721 (732)
Q Consensus 657 -------~lL~-----~~s~~~~e~A~~~L~~L~~~~~~~~~~v~~~G~i~~L~~Ll~~g-~~~~k~kA~~lL~~l~~ 721 (732)
+++. ..++..+..-+.+|+.||. ....++.+.+.|+.+.|-.+=... ++..++++-.+..++-+
T Consensus 239 ~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLca-T~~GRe~lR~kgvYpilRElhk~e~ded~~~ace~vvq~Lv~ 315 (353)
T KOG2973|consen 239 AKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCA-TRAGREVLRSKGVYPILRELHKWEEDEDIREACEQVVQMLVR 315 (353)
T ss_pred hcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHh-hhHhHHHHHhcCchHHHHHHhcCCCcHHHHHHHHHHHHHHHh
Confidence 2331 2457778889999999999 556777788888888777766654 36777777777776644
|
|
| >KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.1e-07 Score=93.45 Aligned_cols=56 Identities=25% Similarity=0.651 Sum_probs=51.4
Q ss_pred CccccccCcccCCCceecCCCcccchHHHHHHHhc--CCCCCCCCCCCCCCCCCcccH
Q 004761 238 PYFRCPLSLELMIDPVIVASGQTYERVFIQKWLDH--GLNICPKTRQTLAHTNLIPNY 293 (732)
Q Consensus 238 ~~f~Cpi~~~lm~dPV~~~~g~ty~r~~I~~~~~~--~~~~cP~~~~~l~~~~l~pn~ 293 (732)
..|-|-||+++-+|||++.|||-||=.||.+|++. +...||+|+...+.+.++|-|
T Consensus 46 ~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlY 103 (230)
T KOG0823|consen 46 GFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLY 103 (230)
T ss_pred CceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEEeee
Confidence 58999999999999999999999999999999974 345689999999999999976
|
|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=2.8e-05 Score=95.20 Aligned_cols=59 Identities=25% Similarity=0.243 Sum_probs=38.1
Q ss_pred chHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHh
Q 004761 445 PYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNL 514 (732)
Q Consensus 445 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nL 514 (732)
..++.|++.|.++++.+++.|+..|..+.. .++++.|+..|++++..++..|+.+|..+
T Consensus 621 ~~~~~L~~~L~D~d~~VR~~Av~~L~~~~~-----------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l 679 (897)
T PRK13800 621 PSVAELAPYLADPDPGVRRTAVAVLTETTP-----------PGFGPALVAALGDGAAAVRRAAAEGLREL 679 (897)
T ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHhhhcc-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 345667777777777777777777665531 24566666666666666776666666555
|
|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=3e-05 Score=94.95 Aligned_cols=215 Identities=20% Similarity=0.197 Sum_probs=151.7
Q ss_pred cCchHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCchHH
Q 004761 443 TTPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKA 522 (732)
Q Consensus 443 ~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k~ 522 (732)
....++.|++.|+.+++.++..|+..|..+.... ...+.|...|.++++.++..|+.+|..+..
T Consensus 650 ~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~----------~~~~~L~~~L~~~d~~VR~~A~~aL~~~~~------ 713 (897)
T PRK13800 650 PPGFGPALVAALGDGAAAVRRAAAEGLRELVEVL----------PPAPALRDHLGSPDPVVRAAALDVLRALRA------ 713 (897)
T ss_pred chhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc----------CchHHHHHHhcCCCHHHHHHHHHHHHhhcc------
Confidence 3556677888887778888888877777664211 223567777777888888888888776542
Q ss_pred HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhccCchh
Q 004761 523 MIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFHEN 602 (732)
Q Consensus 523 ~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~n 602 (732)
+....|+..|.+.++.+|..|+.+|..+. ..+.|..++.+.++.++..++.+|..+....
T Consensus 714 -----~~~~~l~~~L~D~d~~VR~~Av~aL~~~~-------------~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~-- 773 (897)
T PRK13800 714 -----GDAALFAAALGDPDHRVRIEAVRALVSVD-------------DVESVAGAATDENREVRIAVAKGLATLGAGG-- 773 (897)
T ss_pred -----CCHHHHHHHhcCCCHHHHHHHHHHHhccc-------------CcHHHHHHhcCCCHHHHHHHHHHHHHhcccc--
Confidence 22345667788888888888887777642 1245667777888888888888887775421
Q ss_pred HHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCChhhHHHHHHcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Q 004761 603 KARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCLHS 681 (732)
Q Consensus 603 ~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~~r~~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~ 681 (732)
.+.++.|..++ +++..++..|+..|..+...+ ..+..+...+.+.++.++..|+.+|..+..
T Consensus 774 ------~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~---------~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-- 836 (897)
T PRK13800 774 ------APAGDAVRALTGDPDPLVRAAALAALAELGCPP---------DDVAAATAALRASAWQVRQGAARALAGAAA-- 836 (897)
T ss_pred ------chhHHHHHHHhcCCCHHHHHHHHHHHHhcCCcc---------hhHHHHHHHhcCCChHHHHHHHHHHHhccc--
Confidence 22367777777 777778888888887763321 123557777888888888888888876532
Q ss_pred hHhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHh
Q 004761 682 PKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHF 719 (732)
Q Consensus 682 ~~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l 719 (732)
...++.|..++.+.+..+|..|...|..+
T Consensus 837 ---------~~a~~~L~~~L~D~~~~VR~~A~~aL~~~ 865 (897)
T PRK13800 837 ---------DVAVPALVEALTDPHLDVRKAAVLALTRW 865 (897)
T ss_pred ---------cchHHHHHHHhcCCCHHHHHHHHHHHhcc
Confidence 23469999999999999999999999876
|
|
| >cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments | Back alignment and domain information |
|---|
Probab=98.41 E-value=4.5e-05 Score=84.02 Aligned_cols=216 Identities=14% Similarity=0.154 Sum_probs=161.3
Q ss_pred CchHHHHHHHhcC-CCHHHHHHHHHHHHHHhccChhhHHHHHhc-----CCHHHHHHhhccCCHHHHHHHHHHHHHhhcC
Q 004761 444 TPYVKKLIEDLNS-TSNEIQASAAAELRLLAKHNMENRMIIGNC-----GAIPPLLSLLYSEAQLTQEHAVTALLNLSIN 517 (732)
Q Consensus 444 ~~~i~~Lv~~L~s-~~~~~~~~Al~~L~~La~~~~~~r~~i~~~-----G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~ 517 (732)
...+..++..|+. ..++.....+..+..+...++..-..+.+. ....+++.+|..+|.-++..|..+|..+...
T Consensus 52 ~~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~ 131 (429)
T cd00256 52 GQYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACF 131 (429)
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhc
Confidence 3556778888864 456778889999999988876554555543 4567778899888999999999999888543
Q ss_pred -CchHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCC--CHHHHHHHHHHH
Q 004761 518 -DENKAMIAEAGAIEPLIHVLKSG-NGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSG--TLRGRKDAATAL 593 (732)
Q Consensus 518 -~~~k~~i~~~g~l~~Lv~lL~~~-~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~--~~~~~~~Al~aL 593 (732)
..+.......-.+..|...|+++ +...+..++.+|..|...+.+|..+...++++.|+.+|+.. +.+....++.++
T Consensus 132 ~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~l 211 (429)
T cd00256 132 GLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCI 211 (429)
T ss_pred CccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHH
Confidence 22211111111344556666654 36778888899999999999999998888999999999863 468899999999
Q ss_pred HHhccCchhHHHHHhhchHHHHHHhc--CCChHHHHHHHHHHHHHhCChh-------hHHHHHHcCcHHHHHHHHh
Q 004761 594 FNLSIFHENKARIIQAGAVKHLVDLM--DPSTGMVDKAVALLANLSTVGE-------GRLAIAREGGIPSLVEVVE 660 (732)
Q Consensus 594 ~nLs~~~~n~~~lv~~G~V~~Ll~lL--~~~~~l~e~al~iL~nLa~~~~-------~r~~i~~~~~I~~Lv~lL~ 660 (732)
+-|+.+++....+...|.++.|++++ .....++.-++++|.||...+. ....+++.|. +.+++.|.
T Consensus 212 WlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l-~~~l~~L~ 286 (429)
T cd00256 212 WLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKV-LKTLQSLE 286 (429)
T ss_pred HHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcCh-HHHHHHHh
Confidence 99999988777888899999999999 6677889999999999987431 2244555544 44555553
|
The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example. |
| >KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.41 E-value=2.1e-05 Score=82.91 Aligned_cols=181 Identities=20% Similarity=0.165 Sum_probs=152.4
Q ss_pred CHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhccCc-hhHHHHHhhchHHHHHHhc
Q 004761 541 NGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFH-ENKARIIQAGAVKHLVDLM 619 (732)
Q Consensus 541 ~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~-~n~~~lv~~G~V~~Ll~lL 619 (732)
+.+-++.|..-|..+..+-+|...+...|++.+++.++.+.+...++.|+.+|...+.++ ..+..+++.|+.+.|+..+
T Consensus 96 ~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~l 175 (342)
T KOG2160|consen 96 DLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKIL 175 (342)
T ss_pred CHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHH
Confidence 567777888888888877788888999999999999999999999999999999999865 5778899999999999999
Q ss_pred --CCChHHHHHHHHHHHHHhCC-hhhHHHHHHcCcHHHHHHHHhc--CCHHHHHHHHHHHHHHhcCChHhHHHHHhCCCH
Q 004761 620 --DPSTGMVDKAVALLANLSTV-GEGRLAIAREGGIPSLVEVVES--GSQRGKENAASILLQLCLHSPKFCTLVLQEGAV 694 (732)
Q Consensus 620 --~~~~~l~e~al~iL~nLa~~-~~~r~~i~~~~~I~~Lv~lL~~--~s~~~~e~A~~~L~~L~~~~~~~~~~v~~~G~i 694 (732)
+.+.....+|+.+++.|-++ +.|...+...+|...|...+.+ .+...+..|+..+..+..........+...|..
T Consensus 176 s~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f~ 255 (342)
T KOG2160|consen 176 SSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGFQ 255 (342)
T ss_pred ccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhhh
Confidence 55666779999999999875 4688899999999999999988 577889999999999988777777777778888
Q ss_pred HHHHHchhcCChHHHHHHHH-HHHHhhc
Q 004761 695 PPLVGLSQSGTPRAKEKAQQ-LLSHFRN 721 (732)
Q Consensus 695 ~~L~~Ll~~g~~~~k~kA~~-lL~~l~~ 721 (732)
..+..+..+.+..+++.|.. +|..+..
T Consensus 256 ~~~~~l~~~l~~~~~e~~l~~~l~~l~~ 283 (342)
T KOG2160|consen 256 RVLENLISSLDFEVNEAALTALLSLLSE 283 (342)
T ss_pred HHHHHHhhccchhhhHHHHHHHHHHHHH
Confidence 88888888888777777765 3444433
|
|
| >PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.2e-07 Score=74.11 Aligned_cols=58 Identities=17% Similarity=0.429 Sum_probs=33.5
Q ss_pred ccccccCcccCCCceec-CCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHH
Q 004761 239 YFRCPLSLELMIDPVIV-ASGQTYERVFIQKWLDHGLNICPKTRQTLAHTNLIPNYTVKAMI 299 (732)
Q Consensus 239 ~f~Cpi~~~lm~dPV~~-~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn~~l~~~i 299 (732)
-++|++|.++|++||.+ .|.|+||+.||.+.+.. .||+|+.|-...++.-|..|-++|
T Consensus 7 lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~~---~CPvC~~Paw~qD~~~NrqLd~~i 65 (65)
T PF14835_consen 7 LLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIGS---ECPVCHTPAWIQDIQINRQLDSMI 65 (65)
T ss_dssp TTS-SSS-S--SS-B---SSS--B-TTTGGGGTTT---B-SSS--B-S-SS----HHHHHHH
T ss_pred hcCCcHHHHHhcCCceeccCccHHHHHHhHHhcCC---CCCCcCChHHHHHHHhhhhhhccC
Confidence 36899999999999975 79999999999886653 499999999999999999998876
|
|
| >PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A | Back alignment and domain information |
|---|
Probab=98.37 E-value=2.5e-07 Score=70.70 Aligned_cols=47 Identities=23% Similarity=0.441 Sum_probs=40.8
Q ss_pred CccccccCcccCCCceecCCCcc-cchHHHHHHHhcCCCCCCCCCCCCC
Q 004761 238 PYFRCPLSLELMIDPVIVASGQT-YERVFIQKWLDHGLNICPKTRQTLA 285 (732)
Q Consensus 238 ~~f~Cpi~~~lm~dPV~~~~g~t-y~r~~I~~~~~~~~~~cP~~~~~l~ 285 (732)
+++.|+||++-+.++++++|||. ||..|+.+|+.. ...||.|++++.
T Consensus 1 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 1 EDEECPICFENPRDVVLLPCGHLCFCEECAERLLKR-KKKCPICRQPIE 48 (50)
T ss_dssp -HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHT-TSBBTTTTBB-S
T ss_pred CcCCCccCCccCCceEEeCCCChHHHHHHhHHhccc-CCCCCcCChhhc
Confidence 46789999999999999999999 999999999994 478999999864
|
... |
| >KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.36 E-value=6.9e-06 Score=93.52 Aligned_cols=151 Identities=19% Similarity=0.202 Sum_probs=126.8
Q ss_pred cchHHHHHHhhcCC-CHHHHHHHHHHHHHhcc-CchhHHHHHhhchHHHHHHhc--CCChHHHHHHHHHHHHHhCChhhH
Q 004761 568 SGAVKALVDLLGSG-TLRGRKDAATALFNLSI-FHENKARIIQAGAVKHLVDLM--DPSTGMVDKAVALLANLSTVGEGR 643 (732)
Q Consensus 568 ~g~i~~Lv~lL~~~-~~~~~~~Al~aL~nLs~-~~~n~~~lv~~G~V~~Ll~lL--~~~~~l~e~al~iL~nLa~~~~~r 643 (732)
.-++|.|+.+|++. +.++...|++||.+|+. .+.....+|+.++||.|++-| -..-++.|+++.+|..|++.. -
T Consensus 210 ~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H--~ 287 (1051)
T KOG0168|consen 210 KSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRH--P 287 (1051)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhc--c
Confidence 35789999999975 58999999999999997 788899999999999999988 456788999999999998743 3
Q ss_pred HHHHHcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhcC-ChHhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHhhcc
Q 004761 644 LAIAREGGIPSLVEVVESGSQRGKENAASILLQLCLH-SPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFRNQ 722 (732)
Q Consensus 644 ~~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~-~~~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~~ 722 (732)
.++.++|++...+.++.--+..++..|+++..|+|.. .++.-..+++ ++|.|..+++..+.+.-+.+..++..+-+.
T Consensus 288 ~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v~e--alPlL~~lLs~~D~k~ies~~ic~~ri~d~ 365 (1051)
T KOG0168|consen 288 KAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFVME--ALPLLTPLLSYQDKKPIESVCICLTRIADG 365 (1051)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHH--HHHHHHHHHhhccchhHHHHHHHHHHHHHh
Confidence 5788999999999999888889999999999999985 3444445554 599999999999988888777766655443
|
|
| >PHA02929 N1R/p28-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=3.3e-07 Score=92.58 Aligned_cols=49 Identities=18% Similarity=0.401 Sum_probs=41.6
Q ss_pred CCCccccccCcccCCCc--------eecCCCcccchHHHHHHHhcCCCCCCCCCCCCC
Q 004761 236 IPPYFRCPLSLELMIDP--------VIVASGQTYERVFIQKWLDHGLNICPKTRQTLA 285 (732)
Q Consensus 236 ~p~~f~Cpi~~~lm~dP--------V~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~ 285 (732)
...+..||||++.+.+| |+.+|||+||+.||.+|+.. +.+||.||.++.
T Consensus 171 ~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~-~~tCPlCR~~~~ 227 (238)
T PHA02929 171 RSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKE-KNTCPVCRTPFI 227 (238)
T ss_pred CCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhc-CCCCCCCCCEee
Confidence 45678999999987764 56789999999999999975 479999998875
|
|
| >KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.34 E-value=2.1e-07 Score=94.92 Aligned_cols=65 Identities=22% Similarity=0.433 Sum_probs=60.0
Q ss_pred CccccccCcccCCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHH
Q 004761 238 PYFRCPLSLELMIDPVIVASGQTYERVFIQKWLDHGLNICPKTRQTLAHTNLIPNYTVKAMIENWC 303 (732)
Q Consensus 238 ~~f~Cpi~~~lm~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn~~l~~~i~~~~ 303 (732)
+-++|-||.+.|+-||+++||||||--||.+++... +.||.|..++....|.-|.-|-.+|+.+-
T Consensus 22 ~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~~-p~CP~C~~~~~Es~Lr~n~il~Eiv~S~~ 86 (442)
T KOG0287|consen 22 DLLRCGICFEYFNIPMITPCSHTFCSLCIRKFLSYK-PQCPTCCVTVTESDLRNNRILDEIVKSLN 86 (442)
T ss_pred HHHHHhHHHHHhcCceeccccchHHHHHHHHHhccC-CCCCceecccchhhhhhhhHHHHHHHHHH
Confidence 457899999999999999999999999999999875 88999999999999999999999988773
|
|
| >PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.32 E-value=5.6e-05 Score=87.27 Aligned_cols=251 Identities=21% Similarity=0.234 Sum_probs=159.8
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCchHHHHH
Q 004761 446 YVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAMIA 525 (732)
Q Consensus 446 ~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k~~i~ 525 (732)
.+..+.+.|.++++..+-.|++.|.++.. ++... -.++.+..++.++++.++..|+.++..+...... .+.
T Consensus 80 ~~n~l~kdl~~~n~~~~~lAL~~l~~i~~--~~~~~-----~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~--~~~ 150 (526)
T PF01602_consen 80 IINSLQKDLNSPNPYIRGLALRTLSNIRT--PEMAE-----PLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPD--LVE 150 (526)
T ss_dssp HHHHHHHHHCSSSHHHHHHHHHHHHHH-S--HHHHH-----HHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHC--CHH
T ss_pred HHHHHHHhhcCCCHHHHHHHHhhhhhhcc--cchhh-----HHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHH--HHH
Confidence 36778889999999999999999999872 23222 2577888999999999999999999988653221 111
Q ss_pred HcCCHHHHHHHHcCCCHHHHHHHHHHHHHh-ccCchhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhccCchhHH
Q 004761 526 EAGAIEPLIHVLKSGNGGAKENSAAALFSL-SVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFHENKA 604 (732)
Q Consensus 526 ~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~L-s~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~n~~ 604 (732)
.. .++.+..+|.+.++.++..|+.++..+ ...+... -.-...+..|..++...++-.+...+..|..++.......
T Consensus 151 ~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~--~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~ 227 (526)
T PF01602_consen 151 DE-LIPKLKQLLSDKDPSVVSAALSLLSEIKCNDDSYK--SLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDA 227 (526)
T ss_dssp GG-HHHHHHHHTTHSSHHHHHHHHHHHHHHHCTHHHHT--THHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHH
T ss_pred HH-HHHHHhhhccCCcchhHHHHHHHHHHHccCcchhh--hhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhh
Confidence 22 588899999888999999999999998 2111111 0111344555555566777777777777777766443222
Q ss_pred HHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCChhhHHHHHHcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChH
Q 004761 605 RIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCLHSPK 683 (732)
Q Consensus 605 ~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~~r~~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~ 683 (732)
.- ..+++.+..++ +.+..+.-.|+.++..+...+. .-..+++.|++++.+.++..+..++..|..++...+.
T Consensus 228 ~~--~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~-----~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~ 300 (526)
T PF01602_consen 228 DK--NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE-----LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPP 300 (526)
T ss_dssp HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH-----HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHH
T ss_pred hH--HHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH-----HHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccch
Confidence 11 45666666666 5556666666676666665544 2223566677777766666777777777777764421
Q ss_pred hHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHhh
Q 004761 684 FCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFR 720 (732)
Q Consensus 684 ~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~ 720 (732)
.+. .....+..+..+.+..+|.+|..+|..+.
T Consensus 301 ----~v~-~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~ 332 (526)
T PF01602_consen 301 ----AVF-NQSLILFFLLYDDDPSIRKKALDLLYKLA 332 (526)
T ss_dssp ----HHG-THHHHHHHHHCSSSHHHHHHHHHHHHHH-
T ss_pred ----hhh-hhhhhhheecCCCChhHHHHHHHHHhhcc
Confidence 222 22222333333555666666666665553
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E. |
| >PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.28 E-value=7.9e-05 Score=86.01 Aligned_cols=253 Identities=16% Similarity=0.162 Sum_probs=170.6
Q ss_pred CchHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCchHHH
Q 004761 444 TPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAM 523 (732)
Q Consensus 444 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k~~ 523 (732)
+..++.+.+.+.++++.++..|+.++..+.+.+++. +... .++.+..+|.+.++.++..|+.++..+..++.....
T Consensus 113 ~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~---~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~~ 188 (526)
T PF01602_consen 113 EPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDL---VEDE-LIPKLKQLLSDKDPSVVSAALSLLSEIKCNDDSYKS 188 (526)
T ss_dssp HHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCC---HHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHHHCTHHHHTT
T ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHH---HHHH-HHHHHhhhccCCcchhHHHHHHHHHHHccCcchhhh
Confidence 345677888899999999999999999999776542 2222 688999999999999999999999988111111011
Q ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhccCchhH
Q 004761 524 IAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFHENK 603 (732)
Q Consensus 524 i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~n~ 603 (732)
.-...+..|..++...++-.+..++.+|..++........- ...++.+..++++.++.+...|+.++.++.....
T Consensus 189 -~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~--~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~-- 263 (526)
T PF01602_consen 189 -LIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK--NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE-- 263 (526)
T ss_dssp -HHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH--
T ss_pred -hHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH--HHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH--
Confidence 11234555556667778888888999888887644332211 4567888888887778888888888888877655
Q ss_pred HHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCChhhHHHHHHcCcHHHHHHHHh-cCCHHHHHHHHHHHHHHhcCC
Q 004761 604 ARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVE-SGSQRGKENAASILLQLCLHS 681 (732)
Q Consensus 604 ~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~~r~~i~~~~~I~~Lv~lL~-~~s~~~~e~A~~~L~~L~~~~ 681 (732)
.-..+++.|..++ +.+.+++-.++..|..++... .. .+. .....+..+. +.+...+..++.+|..++.
T Consensus 264 ---~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~--~~-~v~--~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~-- 333 (526)
T PF01602_consen 264 ---LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN--PP-AVF--NQSLILFFLLYDDDPSIRKKALDLLYKLAN-- 333 (526)
T ss_dssp ---HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC--HH-HHG--THHHHHHHHHCSSSHHHHHHHHHHHHHH----
T ss_pred ---HHHhhHHHHHHHhhcccchhehhHHHHHHHhhccc--ch-hhh--hhhhhhheecCCCChhHHHHHHHHHhhccc--
Confidence 4456788888888 777788888888888887754 12 222 2333344454 6777888888888888886
Q ss_pred hHhHHHHHhCCCHHHHHHchh-cCChHHHHHHHHHHHHhh
Q 004761 682 PKFCTLVLQEGAVPPLVGLSQ-SGTPRAKEKAQQLLSHFR 720 (732)
Q Consensus 682 ~~~~~~v~~~G~i~~L~~Ll~-~g~~~~k~kA~~lL~~l~ 720 (732)
+++... +++.|...+. ..++..++.+...+..+.
T Consensus 334 ~~n~~~-----Il~eL~~~l~~~~d~~~~~~~i~~I~~la 368 (526)
T PF01602_consen 334 ESNVKE-----ILDELLKYLSELSDPDFRRELIKAIGDLA 368 (526)
T ss_dssp HHHHHH-----HHHHHHHHHHHC--HHHHHHHHHHHHHHH
T ss_pred ccchhh-----HHHHHHHHHHhccchhhhhhHHHHHHHHH
Confidence 233333 3455555553 335556666655555443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E. |
| >KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.26 E-value=4.2e-07 Score=85.37 Aligned_cols=53 Identities=23% Similarity=0.531 Sum_probs=45.9
Q ss_pred CccccccCcccCCCce--ecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCcc
Q 004761 238 PYFRCPLSLELMIDPV--IVASGQTYERVFIQKWLDHGLNICPKTRQTLAHTNLIP 291 (732)
Q Consensus 238 ~~f~Cpi~~~lm~dPV--~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~p 291 (732)
.-|.||||++-+..=| .+.|||.||+.||+.-++.+ .+||.|+.+++++.+.+
T Consensus 130 ~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~~-~~CP~C~kkIt~k~~~r 184 (187)
T KOG0320|consen 130 GTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKNT-NKCPTCRKKITHKQFHR 184 (187)
T ss_pred cccCCCceecchhhccccccccchhHHHHHHHHHHHhC-CCCCCcccccchhhhee
Confidence 3589999999987655 46899999999999999987 68999999998887765
|
|
| >KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.1e-05 Score=73.08 Aligned_cols=133 Identities=14% Similarity=0.113 Sum_probs=115.3
Q ss_pred CCHHHHHHhhc-cCCHHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHH
Q 004761 487 GAIPPLLSLLY-SEAQLTQEHAVTALLNLSINDENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKI 565 (732)
Q Consensus 487 G~I~~Lv~lL~-s~~~~v~~~A~~~L~nLs~~~~~k~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i 565 (732)
+.+..|+.-.. ..+.+.+++.+.-|.|.+.++.|-..+.+.++++.++..|...+....+.+.+.|+|++....|+..|
T Consensus 16 ~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~~I 95 (173)
T KOG4646|consen 16 EYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAKFI 95 (173)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHHHH
Confidence 34555665443 56889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcchHHHHHHhhcCCCHHHHHHHHHHHHHhccCc-hhHHHHHhhchHHHHHHhc
Q 004761 566 GRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFH-ENKARIIQAGAVKHLVDLM 619 (732)
Q Consensus 566 ~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~-~n~~~lv~~G~V~~Ll~lL 619 (732)
.+.+++|..+..+.+........|+.+++.|+... ..+..+..-.+|..+.++-
T Consensus 96 ~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r~~ 150 (173)
T KOG4646|consen 96 REALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQRWR 150 (173)
T ss_pred HHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHHHH
Confidence 99999999999999988889999999999999865 4566777766666665553
|
|
| >KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.23 E-value=7e-07 Score=95.59 Aligned_cols=70 Identities=24% Similarity=0.487 Sum_probs=60.9
Q ss_pred CCCccccccCcccCCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHcCC
Q 004761 236 IPPYFRCPLSLELMIDPVIVASGQTYERVFIQKWLDHGLNICPKTRQTLAHTNLIPNYTVKAMIENWCEENNL 308 (732)
Q Consensus 236 ~p~~f~Cpi~~~lm~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn~~l~~~i~~~~~~~~~ 308 (732)
.-+++.||||++.|++|++++|||+||+.||..|+. +...||.|+. . ...+.||..+.+++......+..
T Consensus 10 ~~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~-~~~~Cp~cr~-~-~~~~~~n~~l~~~~~~~~~~~~~ 79 (386)
T KOG2177|consen 10 LQEELTCPICLEYFREPVLLPCGHNFCRACLTRSWE-GPLSCPVCRP-P-SRNLRPNVLLANLVERLRQLRLS 79 (386)
T ss_pred ccccccChhhHHHhhcCccccccchHhHHHHHHhcC-CCcCCcccCC-c-hhccCccHHHHHHHHHHHhcCCc
Confidence 457899999999999999999999999999999999 6678999996 2 33788999999999988877643
|
|
| >cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H) | Back alignment and domain information |
|---|
Probab=98.19 E-value=1.6e-06 Score=64.10 Aligned_cols=44 Identities=39% Similarity=0.872 Sum_probs=39.3
Q ss_pred ccccCcccCCCceecC-CCcccchHHHHHHHhcCCCCCCCCCCCC
Q 004761 241 RCPLSLELMIDPVIVA-SGQTYERVFIQKWLDHGLNICPKTRQTL 284 (732)
Q Consensus 241 ~Cpi~~~lm~dPV~~~-~g~ty~r~~I~~~~~~~~~~cP~~~~~l 284 (732)
.||||++.+.+|+.+. |||+|++.|+..|+..+...||.|+..+
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 4999999999999876 9999999999999998778899998753
|
|
| >PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A | Back alignment and domain information |
|---|
Probab=98.16 E-value=8.4e-07 Score=65.83 Aligned_cols=40 Identities=35% Similarity=0.787 Sum_probs=33.8
Q ss_pred ccccCcccCC---CceecCCCcccchHHHHHHHhcCCCCCCCCC
Q 004761 241 RCPLSLELMI---DPVIVASGQTYERVFIQKWLDHGLNICPKTR 281 (732)
Q Consensus 241 ~Cpi~~~lm~---dPV~~~~g~ty~r~~I~~~~~~~~~~cP~~~ 281 (732)
.||||++-|. .++.++|||+|.+.||.+|+... .+||.||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~-~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRN-NSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHS-SB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhC-CcCCccC
Confidence 4999999994 56668999999999999999875 6999985
|
... |
| >KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.14 E-value=1.7e-05 Score=71.86 Aligned_cols=151 Identities=18% Similarity=0.177 Sum_probs=127.2
Q ss_pred cchHHHHHHhhcC-CCHHHHHHHHHHHHHhccCchhHHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCChhhHHH
Q 004761 568 SGAVKALVDLLGS-GTLRGRKDAATALFNLSIFHENKARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGEGRLA 645 (732)
Q Consensus 568 ~g~i~~Lv~lL~~-~~~~~~~~Al~aL~nLs~~~~n~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~~r~~ 645 (732)
.+-+..||.=..+ .+.++++....-|.|.+..+-|-..+.+..++...++-| ..+..+++.+.+-|+|+|-.+.+..-
T Consensus 15 l~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~~ 94 (173)
T KOG4646|consen 15 LEYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAKF 94 (173)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHHH
Confidence 3556666665554 578899999999999999999999999999999999999 78889999999999999999999999
Q ss_pred HHHcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHH
Q 004761 646 IAREGGIPSLVEVVESGSQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSH 718 (732)
Q Consensus 646 i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~ 718 (732)
|.+++|+|.++..+.+....+...|+..|..||-.+...+.++....++..+...-.+...+.+.-|...|.-
T Consensus 95 I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r~~~s~s~~~rnLa~~fl~~ 167 (173)
T KOG4646|consen 95 IREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQRWRESKSHDERNLASAFLDK 167 (173)
T ss_pred HHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 9999999999999999888899999999999999888888888877777777766655555555555555543
|
|
| >KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.00029 Score=79.01 Aligned_cols=248 Identities=17% Similarity=0.099 Sum_probs=165.8
Q ss_pred CCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcC-CchHHHHHHcCCHHHHHH
Q 004761 457 TSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSIN-DENKAMIAEAGAIEPLIH 535 (732)
Q Consensus 457 ~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~-~~~k~~i~~~g~l~~Lv~ 535 (732)
.+......|+-++..++..-..-|.-+....++.+|+.+|..++..++..++.+|.|+... .+.|..+.+.|+++.+..
T Consensus 389 kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s 468 (678)
T KOG1293|consen 389 KDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILES 468 (678)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHH
Confidence 3455667777788888765444455555667899999999888999999999999999876 667999999999999999
Q ss_pred HHcCCCHHHHHHHHHHHHHhccCchhHHHHH--hcchHHHHHHhhcCCCHHHHHHHHHHHHHhccCc-hhHHHHHhh--c
Q 004761 536 VLKSGNGGAKENSAAALFSLSVLEEYKAKIG--RSGAVKALVDLLGSGTLRGRKDAATALFNLSIFH-ENKARIIQA--G 610 (732)
Q Consensus 536 lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~--~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~-~n~~~lv~~--G 610 (732)
.+.+.+...+.++.|+|.++....+...... +.-....++.+..+.++.+++.++..|.||..+. +.-..+++. .
T Consensus 469 ~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~~svdfll~~~~~ 548 (678)
T KOG1293|consen 469 MLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNSRKSVDFLLEKFKD 548 (678)
T ss_pred HhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcHHHHHHHHHhhhH
Confidence 9999999999999999999998776544332 3333477888899999999999999999998764 344444442 2
Q ss_pred hHHHHHHhc--CCChHHHHHHHHHHHHHhCChhhHHHHHHcCcHHHHHH---HH-----hcCCHHHHHHHHHHHHHHhcC
Q 004761 611 AVKHLVDLM--DPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVE---VV-----ESGSQRGKENAASILLQLCLH 680 (732)
Q Consensus 611 ~V~~Ll~lL--~~~~~l~e~al~iL~nLa~~~~~r~~i~~~~~I~~Lv~---lL-----~~~s~~~~e~A~~~L~~L~~~ 680 (732)
++......+ .....+.......+.++....++...-.-.|-.+.++- .+ .+.......+++|.+.++...
T Consensus 549 ~ld~i~l~lk~a~~~pi~ie~~~~~~~l~~~~d~~~~~am~~~fk~lvl~~e~~~n~~q~s~~~qls~~~~~~iinl~~~ 628 (678)
T KOG1293|consen 549 VLDKIDLQLKIAIGSPILIEFLAKKMRLLNPLDTQQKKAMEGIFKILVLLAEVNENKKQLSIEQQLSLNIMSEIINLTTT 628 (678)
T ss_pred HHHHHHHHHhhccCCceehhhHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhccCC
Confidence 333333333 33334445555555555444443322222232222222 22 223455677888999988774
Q ss_pred --ChHhHHHHH-hCCCHHHHHHchhcC
Q 004761 681 --SPKFCTLVL-QEGAVPPLVGLSQSG 704 (732)
Q Consensus 681 --~~~~~~~v~-~~G~i~~L~~Ll~~g 704 (732)
..+....+. ..|+......+..++
T Consensus 629 ~s~s~~dr~~~~~n~i~e~~~k~~~sd 655 (678)
T KOG1293|consen 629 DSSSNFDRSNLKLNCIWELNNKLWNSD 655 (678)
T ss_pred CCCcccchhhccccceechhhhcccch
Confidence 223334444 345555554444443
|
|
| >COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.11 E-value=1.6e-06 Score=86.79 Aligned_cols=65 Identities=18% Similarity=0.332 Sum_probs=59.0
Q ss_pred ccccccCcccCCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHH
Q 004761 239 YFRCPLSLELMIDPVIVASGQTYERVFIQKWLDHGLNICPKTRQTLAHTNLIPNYTVKAMIENWCE 304 (732)
Q Consensus 239 ~f~Cpi~~~lm~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn~~l~~~i~~~~~ 304 (732)
-++|-||.+-++-|++++||||||.-||.+|+... +.||+|+.+....-+.-+..++..++.+..
T Consensus 25 ~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~q-p~CP~Cr~~~~esrlr~~s~~~ei~es~~~ 89 (391)
T COG5432 25 MLRCRICDCRISIPCETTCGHTFCSLCIRRHLGTQ-PFCPVCREDPCESRLRGSSGSREINESHAR 89 (391)
T ss_pred HHHhhhhhheeecceecccccchhHHHHHHHhcCC-CCCccccccHHhhhcccchhHHHHHHhhhh
Confidence 56899999999999999999999999999999875 899999999988888888888888887754
|
|
| >smart00184 RING Ring finger | Back alignment and domain information |
|---|
Probab=98.06 E-value=3.7e-06 Score=59.85 Aligned_cols=39 Identities=46% Similarity=0.976 Sum_probs=36.1
Q ss_pred cccCcccCCCceecCCCcccchHHHHHHHhcCCCCCCCC
Q 004761 242 CPLSLELMIDPVIVASGQTYERVFIQKWLDHGLNICPKT 280 (732)
Q Consensus 242 Cpi~~~lm~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~~ 280 (732)
|||+++..++|++++|||.|+..|+..|+..+...||.|
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 899999999999999999999999999998666789986
|
E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s) |
| >KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00026 Score=76.00 Aligned_cols=260 Identities=19% Similarity=0.185 Sum_probs=180.8
Q ss_pred ccCchHHHHHHHhcCCCHHH--HHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhc-cCCHHHHHHHHHHHHHhhcCC
Q 004761 442 TTTPYVKKLIEDLNSTSNEI--QASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLY-SEAQLTQEHAVTALLNLSIND 518 (732)
Q Consensus 442 ~~~~~i~~Lv~~L~s~~~~~--~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~-s~~~~v~~~A~~~L~nLs~~~ 518 (732)
-..+.+..|++++.+++.+. +.+|.+.|-.+.. .+||..++..| ...++.+-+ ...++.+...+.+|.++-.+.
T Consensus 177 R~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKHS 253 (832)
T KOG3678|consen 177 RLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFKHS 253 (832)
T ss_pred hccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhhh
Confidence 34667789999999988765 7788888887764 37899999876 444444443 356788888899999998874
Q ss_pred -chHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCc--hhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHH
Q 004761 519 -ENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLE--EYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFN 595 (732)
Q Consensus 519 -~~k~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~--~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~n 595 (732)
+....+++.|+++.++-..+..++.+..+++-+|.|.+.+. +.+..+.+..+-+-|.-+..+.+.-.+..|+.|..-
T Consensus 254 eet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClAV~v 333 (832)
T KOG3678|consen 254 EETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLAVAV 333 (832)
T ss_pred HHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHHhh
Confidence 45778889999999998888889999999999999998754 457777777777888877777777778889999999
Q ss_pred hccCchhHHHHHhhchHH---HHHHhcCCChHHHHHHHHHHHHHhCChhhHHHHHH---cCcHHHHHHHHhcCCHHHHHH
Q 004761 596 LSIFHENKARIIQAGAVK---HLVDLMDPSTGMVDKAVALLANLSTVGEGRLAIAR---EGGIPSLVEVVESGSQRGKEN 669 (732)
Q Consensus 596 Ls~~~~n~~~lv~~G~V~---~Ll~lL~~~~~l~e~al~iL~nLa~~~~~r~~i~~---~~~I~~Lv~lL~~~s~~~~e~ 669 (732)
|+.+.+.-..+-+.|-+. +++..+++.. .++ +. ....+ .+.+..|+-+|++.--+ ..
T Consensus 334 lat~KE~E~~VrkS~TlaLVEPlva~~DP~~------------FAR--D~-hd~aQG~~~d~LqRLvPlLdS~R~E--Aq 396 (832)
T KOG3678|consen 334 LATNKEVEREVRKSGTLALVEPLVASLDPGR------------FAR--DA-HDYAQGRGPDDLQRLVPLLDSNRLE--AQ 396 (832)
T ss_pred hhhhhhhhHHHhhccchhhhhhhhhccCcch------------hhh--hh-hhhhccCChHHHHHhhhhhhcchhh--hh
Confidence 988877655566666443 3333332211 111 00 01111 12478888888743333 33
Q ss_pred HHHHHHHHhcC----ChHhHHHHH-hCCCHHHHHHchhcCChHHHHHHHHHHHHhhcc
Q 004761 670 AASILLQLCLH----SPKFCTLVL-QEGAVPPLVGLSQSGTPRAKEKAQQLLSHFRNQ 722 (732)
Q Consensus 670 A~~~L~~L~~~----~~~~~~~v~-~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~~ 722 (732)
++++. .+|.. .......+. +-|+|..|..+..+.+.-+.+-|.++|..+-+.
T Consensus 397 ~i~AF-~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtviGEE 453 (832)
T KOG3678|consen 397 CIGAF-YLCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVIGEE 453 (832)
T ss_pred hhHHH-HHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHhccc
Confidence 44443 34431 222333343 569999999999877777777888899888654
|
|
| >PF05536 Neurochondrin: Neurochondrin | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00034 Score=80.43 Aligned_cols=231 Identities=16% Similarity=0.098 Sum_probs=161.8
Q ss_pred chHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhh---HHHHHhcCCHHHHHHhhcc-------CCHHHHHHHHHHHHHh
Q 004761 445 PYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMEN---RMIIGNCGAIPPLLSLLYS-------EAQLTQEHAVTALLNL 514 (732)
Q Consensus 445 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~---r~~i~~~G~I~~Lv~lL~s-------~~~~v~~~A~~~L~nL 514 (732)
..+.+.++.|++.+++.+..++-.+..+.+.++.+ ++.+.++=+...|-++|++ +....+.-|+.+|..+
T Consensus 5 ~~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f 84 (543)
T PF05536_consen 5 ASLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAF 84 (543)
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 35788999999999888889999999999877643 4457787667889999986 2356788999999999
Q ss_pred hcCCchH--HHHHHcCCHHHHHHHHcCCCH-HHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCCCHHHHHHHHH
Q 004761 515 SINDENK--AMIAEAGAIEPLIHVLKSGNG-GAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAAT 591 (732)
Q Consensus 515 s~~~~~k--~~i~~~g~l~~Lv~lL~~~~~-e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~ 591 (732)
+.+++.. ..+. +.+|.|+.++.+.+. ++...+..+|..++.+++.+..+.+.|+++.|++.+.+ .+...+.|+.
T Consensus 85 ~~~~~~a~~~~~~--~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~ 161 (543)
T PF05536_consen 85 CRDPELASSPQMV--SRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN-QSFQMEIALN 161 (543)
T ss_pred cCChhhhcCHHHH--HHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHH
Confidence 9876653 3333 459999999988876 99999999999999999999999999999999999987 5677899999
Q ss_pred HHHHhccCchhHHHHHh----hchHHHHHHhc-CCChHHHHHHHHHHHHHhCChhh--HHHHHHcCcH----HHHHHHHh
Q 004761 592 ALFNLSIFHENKARIIQ----AGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGEG--RLAIAREGGI----PSLVEVVE 660 (732)
Q Consensus 592 aL~nLs~~~~n~~~lv~----~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~~--r~~i~~~~~I----~~Lv~lL~ 660 (732)
+|.+++........--. ..+++.+...+ .......-..+..|..+-...+. .........+ .-+..+++
T Consensus 162 lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~ 241 (543)
T PF05536_consen 162 LLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQ 241 (543)
T ss_pred HHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHh
Confidence 99998775432111000 13445555555 33444566678888877554421 1111122223 33333444
Q ss_pred c-CCHHHHHHHHHHHHHHh
Q 004761 661 S-GSQRGKENAASILLQLC 678 (732)
Q Consensus 661 ~-~s~~~~e~A~~~L~~L~ 678 (732)
+ ..+..+..|..+...|.
T Consensus 242 sr~~~~~R~~al~Laa~Ll 260 (543)
T PF05536_consen 242 SRLTPSQRDPALNLAASLL 260 (543)
T ss_pred cCCCHHHHHHHHHHHHHHH
Confidence 4 35555655554444443
|
|
| >KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.00 E-value=4.2e-06 Score=84.83 Aligned_cols=53 Identities=23% Similarity=0.464 Sum_probs=47.4
Q ss_pred CCccccccCcccCCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCc
Q 004761 237 PPYFRCPLSLELMIDPVIVASGQTYERVFIQKWLDHGLNICPKTRQTLAHTNLI 290 (732)
Q Consensus 237 p~~f~Cpi~~~lm~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~ 290 (732)
+..+.|-||++-++||--++|||.||=+||..|..+. .-||.||+++.+..++
T Consensus 237 ~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~ek-~eCPlCR~~~~pskvi 289 (293)
T KOG0317|consen 237 EATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSEK-AECPLCREKFQPSKVI 289 (293)
T ss_pred CCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHccc-cCCCcccccCCCccee
Confidence 4579999999999999999999999999999999875 5699999998876654
|
|
| >PF05536 Neurochondrin: Neurochondrin | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00019 Score=82.51 Aligned_cols=188 Identities=20% Similarity=0.205 Sum_probs=135.9
Q ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHhccCch----hHHHHHhcchHHHHHHhhcCC-------CHHHHHHHHHHHHHhc
Q 004761 529 AIEPLIHVLKSGNGGAKENSAAALFSLSVLEE----YKAKIGRSGAVKALVDLLGSG-------TLRGRKDAATALFNLS 597 (732)
Q Consensus 529 ~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~----~k~~i~~~g~i~~Lv~lL~~~-------~~~~~~~Al~aL~nLs 597 (732)
.++..+.+|+..+.+-|-.++..+.++...++ .+..|.+.-+.+.|-.||+++ ....+..|+..|..+|
T Consensus 6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~ 85 (543)
T PF05536_consen 6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC 85 (543)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence 46777889998887778888888888876443 234566664468888999873 2455677899999999
Q ss_pred cCchhH--HHHHhhchHHHHHHhc-CCCh-HHHHHHHHHHHHHhCChhhHHHHHHcCcHHHHHHHHhcCCHHHHHHHHHH
Q 004761 598 IFHENK--ARIIQAGAVKHLVDLM-DPST-GMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVESGSQRGKENAASI 673 (732)
Q Consensus 598 ~~~~n~--~~lv~~G~V~~Ll~lL-~~~~-~l~e~al~iL~nLa~~~~~r~~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~ 673 (732)
..++.. .+++ +.||.|++.+ ..+. .++..|+.+|..++.+++|+.++.+.|+++.|++.+.+ .+...+.|+.+
T Consensus 86 ~~~~~a~~~~~~--~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~l 162 (543)
T PF05536_consen 86 RDPELASSPQMV--SRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN-QSFQMEIALNL 162 (543)
T ss_pred CChhhhcCHHHH--HHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHH
Confidence 977654 3444 5899999999 5444 89999999999999999999999999999999999987 66779999999
Q ss_pred HHHHhcCChHhHHHHH---hCCCHHHHHHchhcCChHHHHHHHHHHHHh
Q 004761 674 LLQLCLHSPKFCTLVL---QEGAVPPLVGLSQSGTPRAKEKAQQLLSHF 719 (732)
Q Consensus 674 L~~L~~~~~~~~~~v~---~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l 719 (732)
|.+++.........-. -..+++.|...........|-.+..+|..|
T Consensus 163 L~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~ 211 (543)
T PF05536_consen 163 LLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAF 211 (543)
T ss_pred HHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHh
Confidence 9999885332111100 013445555555544444444444444444
|
|
| >PHA02926 zinc finger-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.96 E-value=8.9e-06 Score=79.46 Aligned_cols=55 Identities=15% Similarity=0.338 Sum_probs=43.3
Q ss_pred CCCccccccCcccCCC---------ceecCCCcccchHHHHHHHhcC-----CCCCCCCCCCCCCCCCccc
Q 004761 236 IPPYFRCPLSLELMID---------PVIVASGQTYERVFIQKWLDHG-----LNICPKTRQTLAHTNLIPN 292 (732)
Q Consensus 236 ~p~~f~Cpi~~~lm~d---------PV~~~~g~ty~r~~I~~~~~~~-----~~~cP~~~~~l~~~~l~pn 292 (732)
...+..|+||++...+ ++..+|||+||..||.+|.... ...||.||+.+. .++|+
T Consensus 167 ~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~--~I~pS 235 (242)
T PHA02926 167 VSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR--NITMS 235 (242)
T ss_pred ccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee--eeccc
Confidence 4678899999998754 4667999999999999999742 356999999865 34443
|
|
| >KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00073 Score=80.41 Aligned_cols=231 Identities=18% Similarity=0.142 Sum_probs=154.2
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcC-CchHHHH
Q 004761 446 YVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSIN-DENKAMI 524 (732)
Q Consensus 446 ~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~-~~~k~~i 524 (732)
..+.+=..|.+.++..+..|+.+|..++.+..+.-.... ...++..++.|+++++.++..|+.+++.++.+ ...-..-
T Consensus 349 ~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l-~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~ 427 (1075)
T KOG2171|consen 349 LFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNL-PKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKK 427 (1075)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHH-HHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHH
Confidence 345666788899999999999999999876654322211 25677888889999999999999999999987 3333444
Q ss_pred HHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHhccCchhHHHHHh--cchHH-HHHHhhcCCCHHHHHHHHHHHHHhccCc
Q 004761 525 AEAGAIEPLIHVLKSG-NGGAKENSAAALFSLSVLEEYKAKIGR--SGAVK-ALVDLLGSGTLRGRKDAATALFNLSIFH 600 (732)
Q Consensus 525 ~~~g~l~~Lv~lL~~~-~~e~~~~Aa~~L~~Ls~~~~~k~~i~~--~g~i~-~Lv~lL~~~~~~~~~~Al~aL~nLs~~~ 600 (732)
...-.++.|+..+.+. ++.++.+|+.+|.+++..-. +..+.. .+.+. .+..++.++++.+++.++.+|...+...
T Consensus 428 ~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~-~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA 506 (1075)
T KOG2171|consen 428 HHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECD-KSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAA 506 (1075)
T ss_pred HHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHH
Confidence 4455666788888764 68999999999999886332 333332 26666 3444556778999999999999988765
Q ss_pred hhHHHHHhhchHHHHHHhc-CC-ChHHHH---HHHHHHHHHhCChhhHHHHHHc--CcHHHHHHH---HhcCCHHHHHHH
Q 004761 601 ENKARIIQAGAVKHLVDLM-DP-STGMVD---KAVALLANLSTVGEGRLAIARE--GGIPSLVEV---VESGSQRGKENA 670 (732)
Q Consensus 601 ~n~~~lv~~G~V~~Ll~lL-~~-~~~l~e---~al~iL~nLa~~~~~r~~i~~~--~~I~~Lv~l---L~~~s~~~~e~A 670 (732)
+..-.=.-.-.+|.|..+| .. +.+..+ +...++..++. ..|++.+... ..+..+..+ ....+...+++-
T Consensus 507 ~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~-AVGke~F~~~a~eliqll~~~~~~~~~~dd~~~sy~ 585 (1075)
T KOG2171|consen 507 QEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIAR-AVGKEKFLPLAEELIQLLLELQGSDQDDDDPLRSYM 585 (1075)
T ss_pred hhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHH-HhhhhhhhHhHHHHHHHHHhhcccchhhccccHHHH
Confidence 5554444467888888888 22 233333 33333332222 3455555542 134444444 222345567777
Q ss_pred HHHHHHHhc
Q 004761 671 ASILLQLCL 679 (732)
Q Consensus 671 ~~~L~~L~~ 679 (732)
...-.++|+
T Consensus 586 ~~~warmc~ 594 (1075)
T KOG2171|consen 586 IAFWARMCR 594 (1075)
T ss_pred HHHHHHHHH
Confidence 777778887
|
|
| >KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.0042 Score=71.10 Aligned_cols=246 Identities=17% Similarity=0.107 Sum_probs=187.2
Q ss_pred hHHHHHHHhcC--CCHHHHHHHHHHHHHHhccCh------hhH-----------HHHHhcCCHHHHHHhhccCCHHHHHH
Q 004761 446 YVKKLIEDLNS--TSNEIQASAAAELRLLAKHNM------ENR-----------MIIGNCGAIPPLLSLLYSEAQLTQEH 506 (732)
Q Consensus 446 ~i~~Lv~~L~s--~~~~~~~~Al~~L~~La~~~~------~~r-----------~~i~~~G~I~~Lv~lL~s~~~~v~~~ 506 (732)
.++.|++-|.. .+++....++..+..+..+.+ ..+ ..|...+.|..|+.++...|.-++..
T Consensus 62 Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~ 141 (970)
T KOG0946|consen 62 GMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLY 141 (970)
T ss_pred ccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhH
Confidence 35778888864 367888899999998886652 111 12334589999999999999999999
Q ss_pred HHHHHHHhhcC--CchHHHHH-HcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHHhc-chHHHHHHhhcCCC
Q 004761 507 AVTALLNLSIN--DENKAMIA-EAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRS-GAVKALVDLLGSGT 582 (732)
Q Consensus 507 A~~~L~nLs~~--~~~k~~i~-~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~-g~i~~Lv~lL~~~~ 582 (732)
++..|.++-.. .+.+..+. .+-++..|+.+|.+....+|-.+...|..|.....+...++.. .++..|+.++....
T Consensus 142 aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEG 221 (970)
T KOG0946|consen 142 AIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEG 221 (970)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999988544 34566555 5789999999999888889999999999998877666666554 89999999998632
Q ss_pred ----HHHHHHHHHHHHHhccCc-hhHHHHHhhchHHHHHHhc----CCCh--------H--HHHHHHHHHHHHhCCh---
Q 004761 583 ----LRGRKDAATALFNLSIFH-ENKARIIQAGAVKHLVDLM----DPST--------G--MVDKAVALLANLSTVG--- 640 (732)
Q Consensus 583 ----~~~~~~Al~aL~nLs~~~-~n~~~lv~~G~V~~Ll~lL----~~~~--------~--l~e~al~iL~nLa~~~--- 640 (732)
.-+..+|+..|.||..++ .|+..+.+.+-+|.|..+| ..+. . -+..++.++..|+.-.
T Consensus 222 g~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~ 301 (970)
T KOG0946|consen 222 GLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTS 301 (970)
T ss_pred CCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcH
Confidence 246889999999999865 5888899999999999888 1221 1 2345777777776521
Q ss_pred ----hhHHHHHHcCcHHHHHHHHhcC--CHHHHHHHHHHHHHHhcCChHhHHHHHhC
Q 004761 641 ----EGRLAIAREGGIPSLVEVVESG--SQRGKENAASILLQLCLHSPKFCTLVLQE 691 (732)
Q Consensus 641 ----~~r~~i~~~~~I~~Lv~lL~~~--s~~~~e~A~~~L~~L~~~~~~~~~~v~~~ 691 (732)
.++.++...+++..|..++.+. ..++...++-++.++.+++..++..+.+.
T Consensus 302 ~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIltesiitvAevVRgn~~nQ~~F~~v 358 (970)
T KOG0946|consen 302 SITHQNQKALVSSHLLDVLCTILMHPGVPADILTESIITVAEVVRGNARNQDEFADV 358 (970)
T ss_pred HHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHHHHHHHHHHHHhchHHHHHHhhc
Confidence 2345667788899999977553 55678888888999999888888888753
|
|
| >KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00013 Score=83.63 Aligned_cols=54 Identities=17% Similarity=0.354 Sum_probs=49.3
Q ss_pred CccccccCcccCCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCcc
Q 004761 238 PYFRCPLSLELMIDPVIVASGQTYERVFIQKWLDHGLNICPKTRQTLAHTNLIP 291 (732)
Q Consensus 238 ~~f~Cpi~~~lm~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~p 291 (732)
.-+.||.|..=.+|-||+.|||.||-.||+.-+......||.|+.+|..-++.|
T Consensus 642 ~~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganDv~~ 695 (698)
T KOG0978|consen 642 ELLKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGANDVHR 695 (698)
T ss_pred hceeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCcccccc
Confidence 347899999999999999999999999999999988889999999998777765
|
|
| >TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1 | Back alignment and domain information |
|---|
Probab=97.90 E-value=1.6e-05 Score=82.70 Aligned_cols=62 Identities=21% Similarity=0.340 Sum_probs=47.1
Q ss_pred CccccccCccc-CCCce----ecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCC----CcccHHHHHHH
Q 004761 238 PYFRCPLSLEL-MIDPV----IVASGQTYERVFIQKWLDHGLNICPKTRQTLAHTN----LIPNYTVKAMI 299 (732)
Q Consensus 238 ~~f~Cpi~~~l-m~dPV----~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~----l~pn~~l~~~i 299 (732)
++..||+|+.- +-.|= +-+|||+||++||.++|..|...||.|+.++.... +.++..+.+.|
T Consensus 2 d~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~fr~q~F~D~~vekEV 72 (309)
T TIGR00570 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNNFRVQLFEDPTVEKEV 72 (309)
T ss_pred CCCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhhccccccccHHHHHHH
Confidence 56789999983 44553 22699999999999999888789999999998766 44555554444
|
All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.0007 Score=76.09 Aligned_cols=171 Identities=16% Similarity=0.167 Sum_probs=121.1
Q ss_pred hHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccC-chhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhcc
Q 004761 520 NKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVL-EEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSI 598 (732)
Q Consensus 520 ~k~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~-~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~ 598 (732)
++..+.+.-....+.......+...+..|+-++.+++.. ..-+.......++.+||+++..++..+...++.+|.||..
T Consensus 369 ~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVm 448 (678)
T KOG1293|consen 369 LKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVM 448 (678)
T ss_pred HHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHh
Confidence 444444443333333333334444544444444444431 1222223344788999999999999999999999999987
Q ss_pred -CchhHHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCChhhHH--HHHHcCcHHHHHHHHhcCCHHHHHHHHHHH
Q 004761 599 -FHENKARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGEGRL--AIAREGGIPSLVEVVESGSQRGKENAASIL 674 (732)
Q Consensus 599 -~~~n~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~~r~--~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L 674 (732)
+.+-+..+++.|+|..+.+++ +.+.++...++++|.++....+... +...-=+-..++.++.+++..++|.|...|
T Consensus 449 efs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqll 528 (678)
T KOG1293|consen 449 EFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLL 528 (678)
T ss_pred hcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHH
Confidence 677899999999999999999 8888999999999999987655332 222222456677888899999999999999
Q ss_pred HHHhcCChHhHHHHHh
Q 004761 675 LQLCLHSPKFCTLVLQ 690 (732)
Q Consensus 675 ~~L~~~~~~~~~~v~~ 690 (732)
.||..+..+....+++
T Consensus 529 RNl~c~~~~svdfll~ 544 (678)
T KOG1293|consen 529 RNLTCNSRKSVDFLLE 544 (678)
T ss_pred HHhhcCcHHHHHHHHH
Confidence 9999876555554443
|
|
| >KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.0039 Score=74.38 Aligned_cols=271 Identities=19% Similarity=0.215 Sum_probs=158.9
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhc-CCHHHHHHhh----ccCCHHHHHHHHHHHHHhhcCCc-h
Q 004761 447 VKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNC-GAIPPLLSLL----YSEAQLTQEHAVTALLNLSINDE-N 520 (732)
Q Consensus 447 i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~-G~I~~Lv~lL----~s~~~~v~~~A~~~L~nLs~~~~-~ 520 (732)
.+.+.+.+..++..++..|++++..++...+.++...... ..+|.++..+ ..+|.+....++.+|..|..... .
T Consensus 161 ~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~ 240 (1075)
T KOG2171|consen 161 LRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKL 240 (1075)
T ss_pred HHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHH
Confidence 4455566776666689999999998887664333333322 3566555554 44566666666666666543321 1
Q ss_pred -HHHHHHcCCHHHHHHHHcCC--CHHHHHHHHHHHHHhccCc--------------------------------------
Q 004761 521 -KAMIAEAGAIEPLIHVLKSG--NGGAKENSAAALFSLSVLE-------------------------------------- 559 (732)
Q Consensus 521 -k~~i~~~g~l~~Lv~lL~~~--~~e~~~~Aa~~L~~Ls~~~-------------------------------------- 559 (732)
+..+. ..+...+.+.++. +..+|..|+-.|..++...
T Consensus 241 l~~~l~--~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~d 318 (1075)
T KOG2171|consen 241 LRPHLS--QIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLD 318 (1075)
T ss_pred HHHHHH--HHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccc
Confidence 11111 1222233333332 2334444444443332210
Q ss_pred --h---hH-------HHHHhc-c---hHH----HHHHhhcCCCHHHHHHHHHHHHHhccCchhHHHHHh--hchHHHHHH
Q 004761 560 --E---YK-------AKIGRS-G---AVK----ALVDLLGSGTLRGRKDAATALFNLSIFHENKARIIQ--AGAVKHLVD 617 (732)
Q Consensus 560 --~---~k-------~~i~~~-g---~i~----~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~n~~~lv~--~G~V~~Ll~ 617 (732)
+ +. +.+.-. | ++| .+-.+|.+.+..-+++|+.||..++.... ..|.. ..+++.++.
T Consensus 319 ed~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~--~~m~~~l~~Il~~Vl~ 396 (1075)
T KOG2171|consen 319 EDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCS--DVMIGNLPKILPIVLN 396 (1075)
T ss_pred cccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccH--HHHHHHHHHHHHHHHh
Confidence 0 00 011100 1 233 33345667777778888888887765432 12222 346667777
Q ss_pred hc-CCChHHHHHHHHHHHHHhCCh-hhHHHHHHcCcHHHHHHHHhc-CCHHHHHHHHHHHHHHhcCChHhHHHHHhCCCH
Q 004761 618 LM-DPSTGMVDKAVALLANLSTVG-EGRLAIAREGGIPSLVEVVES-GSQRGKENAASILLQLCLHSPKFCTLVLQEGAV 694 (732)
Q Consensus 618 lL-~~~~~l~e~al~iL~nLa~~~-~~r~~i~~~~~I~~Lv~lL~~-~s~~~~e~A~~~L~~L~~~~~~~~~~v~~~G~i 694 (732)
.| ++++.++..|+.+++.++..= ..-+.-...-.++.|+..+.+ ++++++.+|+.+|.++....+...-.=.=.+++
T Consensus 397 ~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm 476 (1075)
T KOG2171|consen 397 GLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLM 476 (1075)
T ss_pred hcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 77 899999999999999998742 222222233457788888866 688999999999999988654321111113556
Q ss_pred H-HHHHchhcCChHHHHHHHHHHHHhhc
Q 004761 695 P-PLVGLSQSGTPRAKEKAQQLLSHFRN 721 (732)
Q Consensus 695 ~-~L~~Ll~~g~~~~k~kA~~lL~~l~~ 721 (732)
. .|..+.+++++.+++.|...|.-...
T Consensus 477 ~~~l~~L~~~~~~~v~e~vvtaIasvA~ 504 (1075)
T KOG2171|consen 477 EKKLLLLLQSSKPYVQEQAVTAIASVAD 504 (1075)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHHHHH
Confidence 6 77778889999999999888765543
|
|
| >KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00056 Score=76.63 Aligned_cols=276 Identities=15% Similarity=0.069 Sum_probs=180.6
Q ss_pred ccCchHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHH--h--cCCHHHHHHhhccCCHHHHHHHHHHHHHhhcC
Q 004761 442 TTTPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIG--N--CGAIPPLLSLLYSEAQLTQEHAVTALLNLSIN 517 (732)
Q Consensus 442 ~~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~--~--~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~ 517 (732)
.|...++.|.+.|.+++...+..|..+|..++.++.+.-..-+ + .-.+|.++.+.++++++++..|+..+...-..
T Consensus 125 ~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~ 204 (885)
T KOG2023|consen 125 HWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIII 204 (885)
T ss_pred cchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeec
Confidence 3567789999999999888899999999999977754322211 1 13688899999999999999999988665443
Q ss_pred CchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 004761 518 DENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLS 597 (732)
Q Consensus 518 ~~~k~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs 597 (732)
....-...-..+++.+..+-.+.++++|.+.+.+|..|....-.|-.=--.++++.++..-++.+..+.-.|+.....++
T Consensus 205 ~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~a 284 (885)
T KOG2023|consen 205 QTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALA 284 (885)
T ss_pred CcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHh
Confidence 32222222345677788888888999999999999988764432222222378888888888888888888999999998
Q ss_pred cCchhHHHHHh--hchHHHHHHhc--CC-Ch-------------------------------------------------
Q 004761 598 IFHENKARIIQ--AGAVKHLVDLM--DP-ST------------------------------------------------- 623 (732)
Q Consensus 598 ~~~~n~~~lv~--~G~V~~Ll~lL--~~-~~------------------------------------------------- 623 (732)
..+--+..+.. ...||.|+.-+ ++ +.
T Consensus 285 eqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD 364 (885)
T KOG2023|consen 285 EQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDD 364 (885)
T ss_pred cCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCcccccccccccccccccc
Confidence 88744433333 46777777655 11 11
Q ss_pred -----HHHHHHHHHHHHHhCChhhHHHHHHcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHhHHHHHhC--CCHHH
Q 004761 624 -----GMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCLHSPKFCTLVLQE--GAVPP 696 (732)
Q Consensus 624 -----~l~e~al~iL~nLa~~~~~r~~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~v~~~--G~i~~ 696 (732)
+++...+++|..|+.. -+..+.. -.+|.|-+.|.+..=..+|.++-+|.+++.+.-. -++.. -++|.
T Consensus 365 ~~~dWNLRkCSAAaLDVLanv--f~~elL~-~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~---g~~p~LpeLip~ 438 (885)
T KOG2023|consen 365 AFSDWNLRKCSAAALDVLANV--FGDELLP-ILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQ---GFVPHLPELIPF 438 (885)
T ss_pred ccccccHhhccHHHHHHHHHh--hHHHHHH-HHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhh---hcccchHHHHHH
Confidence 0111112222222110 0111111 1234444444455556899999999888774322 12221 25888
Q ss_pred HHHchhcCChHHHHHHHHHHHHhhccc
Q 004761 697 LVGLSQSGTPRAKEKAQQLLSHFRNQR 723 (732)
Q Consensus 697 L~~Ll~~g~~~~k~kA~~lL~~l~~~~ 723 (732)
|+.++.+..+-+|....+.|..+..|-
T Consensus 439 l~~~L~DKkplVRsITCWTLsRys~wv 465 (885)
T KOG2023|consen 439 LLSLLDDKKPLVRSITCWTLSRYSKWV 465 (885)
T ss_pred HHHHhccCccceeeeeeeeHhhhhhhH
Confidence 999998888888888888887776553
|
|
| >PTZ00429 beta-adaptin; Provisional | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.0039 Score=73.96 Aligned_cols=256 Identities=14% Similarity=0.080 Sum_probs=168.0
Q ss_pred chHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCchHHHH
Q 004761 445 PYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAMI 524 (732)
Q Consensus 445 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k~~i 524 (732)
......++.+.+.+.+.++-.--.+.++++..++.-. -++..|.+-+.++|+.++..|+++|.++-. ..+
T Consensus 68 ~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pelal-----LaINtl~KDl~d~Np~IRaLALRtLs~Ir~-----~~i 137 (746)
T PTZ00429 68 YLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKAL-----LAVNTFLQDTTNSSPVVRALAVRTMMCIRV-----SSV 137 (746)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHHH-----HHHHHHHHHcCCCCHHHHHHHHHHHHcCCc-----HHH
Confidence 3456778888888888777776677777766554321 235567777888999999999999977643 122
Q ss_pred HHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhccCchhHH
Q 004761 525 AEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFHENKA 604 (732)
Q Consensus 525 ~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~n~~ 604 (732)
++ -.+.++.+.|.+.++-+|..|+.++..+-..+. ..+...|.++.|.++|.+.++.++.+|+.+|..+....+...
T Consensus 138 ~e-~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~p--elv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l 214 (746)
T PTZ00429 138 LE-YTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDM--QLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKI 214 (746)
T ss_pred HH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc--ccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhh
Confidence 22 246677788888999999999999999865322 344456888999999999999999999999999986544332
Q ss_pred HHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCChhhHHHHHHcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhcC-Ch
Q 004761 605 RIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCLH-SP 682 (732)
Q Consensus 605 ~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~~r~~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~-~~ 682 (732)
-...+.+..|+..| +.++-.+-..+.+|... .|...... ...+..+...|++.++.+.-.|+.+++++... ++
T Consensus 215 -~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y--~P~~~~e~--~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~ 289 (746)
T PTZ00429 215 -ESSNEWVNRLVYHLPECNEWGQLYILELLAAQ--RPSDKESA--ETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQ 289 (746)
T ss_pred -HHHHHHHHHHHHHhhcCChHHHHHHHHHHHhc--CCCCcHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCH
Confidence 23355666677777 43443344444444332 12211111 23466777778888889999999999888764 23
Q ss_pred HhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHhh
Q 004761 683 KFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFR 720 (732)
Q Consensus 683 ~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~ 720 (732)
+....+.. .+.++|+.|+ ++.+.+|--+...|..+.
T Consensus 290 ~~~~~~~~-rl~~pLv~L~-ss~~eiqyvaLr~I~~i~ 325 (746)
T PTZ00429 290 ELIERCTV-RVNTALLTLS-RRDAETQYIVCKNIHALL 325 (746)
T ss_pred HHHHHHHH-HHHHHHHHhh-CCCccHHHHHHHHHHHHH
Confidence 32222221 1235556653 455666666655554443
|
|
| >KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0012 Score=70.74 Aligned_cols=230 Identities=19% Similarity=0.167 Sum_probs=164.8
Q ss_pred HHHHHhcC-CCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcc--CCHHHHHHHHHHHHHhhcCCchHHHHH
Q 004761 449 KLIEDLNS-TSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYS--EAQLTQEHAVTALLNLSINDENKAMIA 525 (732)
Q Consensus 449 ~Lv~~L~s-~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s--~~~~v~~~A~~~L~nLs~~~~~k~~i~ 525 (732)
.|...+.+ .+.+...-|+++|..+.+.. +.|..++.++++..|+..+.+ .+..+|.+.+-+++.|+.++...+.+.
T Consensus 160 ~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~-eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~ae~~~ 238 (442)
T KOG2759|consen 160 FLKEQLQSSTNNDYIQFAARCLQTLLRVD-EYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAAEKLK 238 (442)
T ss_pred HHHHHHhccCCCchHHHHHHHHHHHhcCc-chhheeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHHHHHh
Confidence 34444544 56677788999999999775 899999999999999998843 468899999999999999988878777
Q ss_pred HcCCHHHHHHHHcCCC-HHHHHHHHHHHHHhccCch---hHHHH---HhcchHHHHHHhhcCC---CHHHHHH-------
Q 004761 526 EAGAIEPLIHVLKSGN-GGAKENSAAALFSLSVLEE---YKAKI---GRSGAVKALVDLLGSG---TLRGRKD------- 588 (732)
Q Consensus 526 ~~g~l~~Lv~lL~~~~-~e~~~~Aa~~L~~Ls~~~~---~k~~i---~~~g~i~~Lv~lL~~~---~~~~~~~------- 588 (732)
.-+.++.|..+++... +.+....++++.|+..... .+..+ +..+-++.-++.|... +++...+
T Consensus 239 ~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~ 318 (442)
T KOG2759|consen 239 RFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEK 318 (442)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 7889999999998765 5577788889999977542 22211 1224445556666532 2322211
Q ss_pred HHHHHHHhccCc------------------------hhHHHHHh--hchHHHHHHhc--CCChHHHHHHHHHHHHHhC-C
Q 004761 589 AATALFNLSIFH------------------------ENKARIIQ--AGAVKHLVDLM--DPSTGMVDKAVALLANLST-V 639 (732)
Q Consensus 589 Al~aL~nLs~~~------------------------~n~~~lv~--~G~V~~Ll~lL--~~~~~l~e~al~iL~nLa~-~ 639 (732)
--.-...||+.+ +|..++-+ -.++..|+.+| +.++.+.--|+.=+....+ .
T Consensus 319 L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~y 398 (442)
T KOG2759|consen 319 LKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHY 398 (442)
T ss_pred HHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhC
Confidence 111222333331 34455554 35788999999 4455555555555665554 6
Q ss_pred hhhHHHHHHcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Q 004761 640 GEGRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCL 679 (732)
Q Consensus 640 ~~~r~~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~ 679 (732)
|+|+..+.+.||=..++++|.+.+++++-+|+.++-.|..
T Consensus 399 P~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~ 438 (442)
T KOG2759|consen 399 PEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMV 438 (442)
T ss_pred chHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence 8899999999999999999999999999999999877655
|
|
| >KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.83 E-value=3.2e-06 Score=87.55 Aligned_cols=67 Identities=24% Similarity=0.320 Sum_probs=55.8
Q ss_pred CCCccccccCcccCCCceecC-CCcccchHHHHHHHhcCCCCCCCCCCCCCC-CCCcccHHHHHHHHHH
Q 004761 236 IPPYFRCPLSLELMIDPVIVA-SGQTYERVFIQKWLDHGLNICPKTRQTLAH-TNLIPNYTVKAMIENW 302 (732)
Q Consensus 236 ~p~~f~Cpi~~~lm~dPV~~~-~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~-~~l~pn~~l~~~i~~~ 302 (732)
+--+|.||||++|.+--.+++ |+|.||+.||-+-+..|+..||.|++.+.. ..|.+....-.+|.+.
T Consensus 40 ~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~SkrsLr~Dp~fdaLis~i 108 (381)
T KOG0311|consen 40 FDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRSLRIDPNFDALISKI 108 (381)
T ss_pred hhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccccCCCCccHHHHHHHH
Confidence 345789999999999998875 999999999999999999999999999865 4677666556666543
|
|
| >PF14634 zf-RING_5: zinc-RING finger domain | Back alignment and domain information |
|---|
Probab=97.74 E-value=2.4e-05 Score=57.95 Aligned_cols=41 Identities=20% Similarity=0.408 Sum_probs=35.1
Q ss_pred ccccCcccC---CCceecCCCcccchHHHHHHHhcCCCCCCCCCC
Q 004761 241 RCPLSLELM---IDPVIVASGQTYERVFIQKWLDHGLNICPKTRQ 282 (732)
Q Consensus 241 ~Cpi~~~lm---~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~~~~ 282 (732)
.||||.+.+ ..|++++|||+||..||.++. .....||+|++
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~-~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLK-GKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhc-CCCCCCcCCCC
Confidence 389999999 467889999999999999999 44578999975
|
|
| >PTZ00429 beta-adaptin; Provisional | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.007 Score=71.86 Aligned_cols=260 Identities=10% Similarity=0.036 Sum_probs=154.1
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCchHHHHH
Q 004761 446 YVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAMIA 525 (732)
Q Consensus 446 ~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k~~i~ 525 (732)
.+..+.+.|.+.++.++..|+-++..+...+++ .+.+.|+++.|..+|...|+.++.+|+.+|..+.......-. .
T Consensus 141 l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pe---lv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~-l 216 (746)
T PTZ00429 141 TLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ---LFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIE-S 216 (746)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc---cccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhH-H
Confidence 345667778889999999999999999876653 344568999999999999999999999999988654332221 2
Q ss_pred HcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhccCch-hHH
Q 004761 526 EAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFHE-NKA 604 (732)
Q Consensus 526 ~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~-n~~ 604 (732)
..+.+..|+..|..-++=.+...+.+|......++ .. ....+..+...|++.++.+.-.|++++.++..+.+ ...
T Consensus 217 ~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~-~e---~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~ 292 (746)
T PTZ00429 217 SNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDK-ES---AETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELI 292 (746)
T ss_pred HHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCc-HH---HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHH
Confidence 33456667777766665566666666544321111 11 12467778888888889999999999998876531 111
Q ss_pred HHHhhchHHHHHHhcCCChHHHHHHHHHHHHHhCChhh-------------------H---H----HHHHcC----cHHH
Q 004761 605 RIIQAGAVKHLVDLMDPSTGMVDKAVALLANLSTVGEG-------------------R---L----AIAREG----GIPS 654 (732)
Q Consensus 605 ~lv~~G~V~~Ll~lL~~~~~l~e~al~iL~nLa~~~~~-------------------r---~----~i~~~~----~I~~ 654 (732)
..+-..+.++|+.+++.+.+++--++..+..++..... + - .+.... .+..
T Consensus 293 ~~~~~rl~~pLv~L~ss~~eiqyvaLr~I~~i~~~~P~lf~~~~~~Ff~~~~Dp~yIK~~KLeIL~~Lane~Nv~~IL~E 372 (746)
T PTZ00429 293 ERCTVRVNTALLTLSRRDAETQYIVCKNIHALLVIFPNLLRTNLDSFYVRYSDPPFVKLEKLRLLLKLVTPSVAPEILKE 372 (746)
T ss_pred HHHHHHHHHHHHHhhCCCccHHHHHHHHHHHHHHHCHHHHHHHHHhhhcccCCcHHHHHHHHHHHHHHcCcccHHHHHHH
Confidence 11111233445555544445555555444333321100 0 0 000111 1233
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHhcCChHhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHh
Q 004761 655 LVEVVESGSQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHF 719 (732)
Q Consensus 655 Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l 719 (732)
|.++....+.+.+..++.++..++..-+... ..++..|+.++..+..-.. .+...++.+
T Consensus 373 L~eYa~d~D~ef~r~aIrAIg~lA~k~~~~a-----~~cV~~Ll~ll~~~~~~v~-e~i~vik~I 431 (746)
T PTZ00429 373 LAEYASGVDMVFVVEVVRAIASLAIKVDSVA-----PDCANLLLQIVDRRPELLP-QVVTAAKDI 431 (746)
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHhChHHH-----HHHHHHHHHHhcCCchhHH-HHHHHHHHH
Confidence 3344444566667777777777665433321 2356778888876544333 344555554
|
|
| >PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless | Back alignment and domain information |
|---|
Probab=97.69 E-value=7.1e-05 Score=54.49 Aligned_cols=40 Identities=45% Similarity=0.518 Sum_probs=37.9
Q ss_pred ChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhh
Q 004761 476 NMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLS 515 (732)
Q Consensus 476 ~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs 515 (732)
+++++..+.+.|++|.|+.+|++.+.+++++|+++|.||+
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 4678999999999999999999999999999999999997
|
Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B .... |
| >PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.012 Score=64.40 Aligned_cols=272 Identities=16% Similarity=0.206 Sum_probs=179.0
Q ss_pred CchHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccC--CHHHHHHHHHHHHHhhcCCchH
Q 004761 444 TPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSE--AQLTQEHAVTALLNLSINDENK 521 (732)
Q Consensus 444 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~--~~~v~~~A~~~L~nLs~~~~~k 521 (732)
....+.+...+-+++.+++-.+.+.+|.+..+. ..-..+.+.+.--.++.-|..+ +..-+++|+..+..+.....+.
T Consensus 24 ~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~-~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~ 102 (371)
T PF14664_consen 24 SFFGERIQCMLLSDSKEVRAAGYRILRYLISDE-ESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGP 102 (371)
T ss_pred HHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCH-HHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCc
Confidence 334455554454555888888889999988654 5556666666555555556533 4455789998887765433222
Q ss_pred HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhccCch
Q 004761 522 AMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFHE 601 (732)
Q Consensus 522 ~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~ 601 (732)
.. ...|.+..++.+..+.+...+..+..+|+.++..+ -..+...|++..|++.+-++........+.++.++...+.
T Consensus 103 ~~-~~~~vvralvaiae~~~D~lr~~cletL~El~l~~--P~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~ 179 (371)
T PF14664_consen 103 KE-IPRGVVRALVAIAEHEDDRLRRICLETLCELALLN--PELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDSPR 179 (371)
T ss_pred cc-CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhC--HHHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcc
Confidence 22 24567888999999888899999999999998743 3566778999999999988777788888999999999998
Q ss_pred hHHHHHhhchHHHHHHhc-C-------CCh--HHHHHHHHHHHHHhCChhhHHHHHHc--CcHHHHHHHHhcCCHHHHHH
Q 004761 602 NKARIIQAGAVKHLVDLM-D-------PST--GMVDKAVALLANLSTVGEGRLAIARE--GGIPSLVEVVESGSQRGKEN 669 (732)
Q Consensus 602 n~~~lv~~G~V~~Ll~lL-~-------~~~--~l~e~al~iL~nLa~~~~~r~~i~~~--~~I~~Lv~lL~~~s~~~~e~ 669 (732)
.|..+...--+..++.-+ + .+. .....+..++..+-++=.|--.+... .++..|+..|..++++.++.
T Consensus 180 tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~ 259 (371)
T PF14664_consen 180 TRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIRKA 259 (371)
T ss_pred hhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHHHH
Confidence 887665533333333333 1 122 22333334444333322233222222 36777777777777777766
Q ss_pred HHHHHHHHhcC-C------------------h-------------------------H--------hHHHHHhCCCHHHH
Q 004761 670 AASILLQLCLH-S------------------P-------------------------K--------FCTLVLQEGAVPPL 697 (732)
Q Consensus 670 A~~~L~~L~~~-~------------------~-------------------------~--------~~~~v~~~G~i~~L 697 (732)
.+.+++.+-.- . . . ....+++.|.++.|
T Consensus 260 Ildll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~l~~~y~aLll~ili~~gL~~~L 339 (371)
T PF14664_consen 260 ILDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRSSKRPNLVNHYLALLLAILIEAGLLEAL 339 (371)
T ss_pred HHHHHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCccccccccHHHHHHHHHHHHHHHcChHHHH
Confidence 66666555420 0 0 0 11233578999999
Q ss_pred HHchhcC-ChHHHHHHHHHHHHh
Q 004761 698 VGLSQSG-TPRAKEKAQQLLSHF 719 (732)
Q Consensus 698 ~~Ll~~g-~~~~k~kA~~lL~~l 719 (732)
+.++.+. ++..+.||.-+|..+
T Consensus 340 ~~li~~~~d~~l~~KAtlLL~el 362 (371)
T PF14664_consen 340 VELIESSEDSSLSRKATLLLGEL 362 (371)
T ss_pred HHHHhcCCCchHHHHHHHHHHHH
Confidence 9999998 688999999988755
|
|
| >KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.62 E-value=3.3e-05 Score=84.21 Aligned_cols=72 Identities=24% Similarity=0.405 Sum_probs=58.2
Q ss_pred CCCccccccCcccCCCceecCCCcccchHHHHHHHhc----CCCCCCCCCCCCCCCCCcccH----HHHHHHHHHHHHcC
Q 004761 236 IPPYFRCPLSLELMIDPVIVASGQTYERVFIQKWLDH----GLNICPKTRQTLAHTNLIPNY----TVKAMIENWCEENN 307 (732)
Q Consensus 236 ~p~~f~Cpi~~~lm~dPV~~~~g~ty~r~~I~~~~~~----~~~~cP~~~~~l~~~~l~pn~----~l~~~i~~~~~~~~ 307 (732)
.+.+..||||++--.=|+.+.|||.||=.||-.+|.. +...||.|+..+..++|.|-+ .-+..++..+..||
T Consensus 183 ~~t~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~~e~~qkke~l~~~~~~ng 262 (513)
T KOG2164|consen 183 GSTDMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVFIEDDQKKEELKLHQDPNG 262 (513)
T ss_pred cCcCCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccceeeeeeccccccHHHHHHhcccC
Confidence 3458999999999999999999999999999999874 356799999999887766643 33455666677776
|
|
| >KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0011 Score=71.39 Aligned_cols=178 Identities=16% Similarity=0.197 Sum_probs=138.3
Q ss_pred HHHHHcCCHHHHHHHHcCCCHHH--HHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcC-CCHHHHHHHHHHHHHhcc
Q 004761 522 AMIAEAGAIEPLIHVLKSGNGGA--KENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGS-GTLRGRKDAATALFNLSI 598 (732)
Q Consensus 522 ~~i~~~g~l~~Lv~lL~~~~~e~--~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~-~~~~~~~~Al~aL~nLs~ 598 (732)
..+...|+++.|+.++..++.++ +..++.+|..+.. .+|++.+...| +..++.+.+. ..++..+..+..|.|+-.
T Consensus 174 D~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~-aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFK 251 (832)
T KOG3678|consen 174 DAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV-AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFK 251 (832)
T ss_pred hHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh-hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhh
Confidence 45666799999999999988654 8899999988754 56888888876 4555555554 357788889999999988
Q ss_pred Cc-hhHHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCC--hhhHHHHHHcCcHHHHHHHHhcCCHHHHHHHHHHH
Q 004761 599 FH-ENKARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTV--GEGRLAIAREGGIPSLVEVVESGSQRGKENAASIL 674 (732)
Q Consensus 599 ~~-~n~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~--~~~r~~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L 674 (732)
+. +.+.+++++|++..++-.. ..++.+...|+-+|+|.+-+ .+++..|++..+-.-|.-+-.+.++-.+.+||-+.
T Consensus 252 HSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClAV 331 (832)
T KOG3678|consen 252 HSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLAV 331 (832)
T ss_pred hhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHH
Confidence 65 5788999999999998888 66789999999999998754 45778888877777777777777888899999999
Q ss_pred HHHhcCChHhHHHHHhCCC---HHHHHHchh
Q 004761 675 LQLCLHSPKFCTLVLQEGA---VPPLVGLSQ 702 (732)
Q Consensus 675 ~~L~~~~~~~~~~v~~~G~---i~~L~~Ll~ 702 (732)
..+.. +.+.-.++.+.|- +++|+..+.
T Consensus 332 ~vlat-~KE~E~~VrkS~TlaLVEPlva~~D 361 (832)
T KOG3678|consen 332 AVLAT-NKEVEREVRKSGTLALVEPLVASLD 361 (832)
T ss_pred hhhhh-hhhhhHHHhhccchhhhhhhhhccC
Confidence 88887 5566666666664 445554443
|
|
| >KOG2734 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.012 Score=63.40 Aligned_cols=236 Identities=16% Similarity=0.169 Sum_probs=172.4
Q ss_pred HHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcC------Cch----HHHHHHcCCHHHHH
Q 004761 465 AAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSIN------DEN----KAMIAEAGAIEPLI 534 (732)
Q Consensus 465 Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~------~~~----k~~i~~~g~l~~Lv 534 (732)
.+..+..+| ..|.---.+++.++++.|+.+|.+.|.++....+..|..|.-. .+. ...+++.+.++.|+
T Consensus 104 ~IQ~mhvlA-t~PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLv 182 (536)
T KOG2734|consen 104 IIQEMHVLA-TMPDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLV 182 (536)
T ss_pred HHHHHHhhh-cChHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHH
Confidence 455566666 3455556778899999999999999999999999999988642 122 34556778888888
Q ss_pred HHHcCCC------HHHHHHHHHHHHHhccCc-hhHHHHHhcchHHHHHHhhcCC-C-HHHHHHHHHHHHHhccCch-hHH
Q 004761 535 HVLKSGN------GGAKENSAAALFSLSVLE-EYKAKIGRSGAVKALVDLLGSG-T-LRGRKDAATALFNLSIFHE-NKA 604 (732)
Q Consensus 535 ~lL~~~~------~e~~~~Aa~~L~~Ls~~~-~~k~~i~~~g~i~~Lv~lL~~~-~-~~~~~~Al~aL~nLs~~~~-n~~ 604 (732)
+-+..-+ .....++.+++.|+...+ +....+.+.|.+..|+.-+... . ...+..|.-+|.-+..+.. |+.
T Consensus 183 qnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~ 262 (536)
T KOG2734|consen 183 QNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRK 262 (536)
T ss_pred HHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhh
Confidence 8776433 234567788888887654 4556666678888877755432 2 3445667777777766554 888
Q ss_pred HHHhhchHHHHHHhc------CC----ChHHHHHHHHHHHHHhCChhhHHHHHHcCcHHHHHHHHhcCCHHHHHHHHHHH
Q 004761 605 RIIQAGAVKHLVDLM------DP----STGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVESGSQRGKENAASIL 674 (732)
Q Consensus 605 ~lv~~G~V~~Ll~lL------~~----~~~l~e~al~iL~nLa~~~~~r~~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L 674 (732)
......++..+++-+ ++ ...+.++...+|+.+...+++|..+....|+....-+++. -...+..|+.+|
T Consensus 263 ~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvL 341 (536)
T KOG2734|consen 263 LLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLRE-KKVSRGSALKVL 341 (536)
T ss_pred hhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHH-HHHhhhhHHHHH
Confidence 888899999998887 21 3467888889999999999999999998888776666654 445677889999
Q ss_pred HHHhcCCh--HhHHHHHhCCCHHHHHHchh
Q 004761 675 LQLCLHSP--KFCTLVLQEGAVPPLVGLSQ 702 (732)
Q Consensus 675 ~~L~~~~~--~~~~~v~~~G~i~~L~~Ll~ 702 (732)
-....+.+ .+|..+++.++...++.+..
T Consensus 342 d~am~g~~gt~~C~kfVe~lGLrtiF~~FM 371 (536)
T KOG2734|consen 342 DHAMFGPEGTPNCNKFVEILGLRTIFPLFM 371 (536)
T ss_pred HHHHhCCCchHHHHHHHHHHhHHHHHHHHh
Confidence 88888654 68888888777766665554
|
|
| >TIGR02270 conserved hypothetical protein | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.007 Score=67.11 Aligned_cols=209 Identities=16% Similarity=0.026 Sum_probs=108.3
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCchHHHHHH
Q 004761 447 VKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAMIAE 526 (732)
Q Consensus 447 i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k~~i~~ 526 (732)
+..|++.|.+.++.++..+++.|..+- ..++.+.|+.+|.+.++.++..++.++... .
T Consensus 88 ~~~L~~~L~d~~~~vr~aaa~ALg~i~-----------~~~a~~~L~~~L~~~~p~vR~aal~al~~r-----------~ 145 (410)
T TIGR02270 88 LRSVLAVLQAGPEGLCAGIQAALGWLG-----------GRQAEPWLEPLLAASEPPGRAIGLAALGAH-----------R 145 (410)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhcCC-----------chHHHHHHHHHhcCCChHHHHHHHHHHHhh-----------c
Confidence 455555555555555555555554321 123455566666666666665555544431 1
Q ss_pred cCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhccCchhHHHH
Q 004761 527 AGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFHENKARI 606 (732)
Q Consensus 527 ~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~n~~~l 606 (732)
....+.+..+|++.++.++..|+.+|..+-. ..+++.|...+.+.++.++..|+.++..+-.
T Consensus 146 ~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~----------~~a~~~L~~al~d~~~~VR~aA~~al~~lG~-------- 207 (410)
T TIGR02270 146 HDPGPALEAALTHEDALVRAAALRALGELPR----------RLSESTLRLYLRDSDPEVRFAALEAGLLAGS-------- 207 (410)
T ss_pred cChHHHHHHHhcCCCHHHHHHHHHHHHhhcc----------ccchHHHHHHHcCCCHHHHHHHHHHHHHcCC--------
Confidence 2234556666666666666666666655432 2345555556666666666666666643321
Q ss_pred HhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCChhhHHHHHHcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHhH
Q 004761 607 IQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCLHSPKFC 685 (732)
Q Consensus 607 v~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~~r~~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~ 685 (732)
.+++..+..+. .........+..++... .. ...++.|..+++.. .++..++.+|..+-.
T Consensus 208 --~~A~~~l~~~~~~~g~~~~~~l~~~lal~-~~---------~~a~~~L~~ll~d~--~vr~~a~~AlG~lg~------ 267 (410)
T TIGR02270 208 --RLAWGVCRRFQVLEGGPHRQRLLVLLAVA-GG---------PDAQAWLRELLQAA--ATRREALRAVGLVGD------ 267 (410)
T ss_pred --HhHHHHHHHHHhccCccHHHHHHHHHHhC-Cc---------hhHHHHHHHHhcCh--hhHHHHHHHHHHcCC------
Confidence 12233333322 22222222222222222 10 13456666666542 366666666654333
Q ss_pred HHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHhhcc
Q 004761 686 TLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFRNQ 722 (732)
Q Consensus 686 ~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~~ 722 (732)
..+++.|+..+.. +..++.|.+.++.+...
T Consensus 268 -----p~av~~L~~~l~d--~~~aR~A~eA~~~ItG~ 297 (410)
T TIGR02270 268 -----VEAAPWCLEAMRE--PPWARLAGEAFSLITGM 297 (410)
T ss_pred -----cchHHHHHHHhcC--cHHHHHHHHHHHHhhCC
Confidence 3467888887743 34888888888888653
|
Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown. |
| >PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0062 Score=66.75 Aligned_cols=246 Identities=15% Similarity=0.136 Sum_probs=169.0
Q ss_pred HHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHHHcCC--CHHHHHHH
Q 004761 471 LLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAMIAEAGAIEPLIHVLKSG--NGGAKENS 548 (732)
Q Consensus 471 ~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k~~i~~~g~l~~Lv~lL~~~--~~e~~~~A 548 (732)
.+-+..+.-+..+.-....+.+..++-+++..++..+.+++..+..+...-..+...+.--.++.-|... +..-|+.|
T Consensus 9 ~l~~~~p~l~~~~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QA 88 (371)
T PF14664_consen 9 DLLKRHPTLKYDLVLSFFGERIQCMLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQA 88 (371)
T ss_pred HHHHhCchhhhhhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHH
Confidence 3334444444444433445555555556669999999999999988888888888877666667777654 35678899
Q ss_pred HHHHHHhccCchhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhccCchhHHHHHhhchHHHHHHhc-CCChHHHH
Q 004761 549 AAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFHENKARIIQAGAVKHLVDLM-DPSTGMVD 627 (732)
Q Consensus 549 a~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~n~~~lv~~G~V~~Ll~lL-~~~~~l~e 627 (732)
...+..+...+..... ...|++..++.+..+.+.+.+..|+.+|..|+..++ ..++.+|++..|++.+ ++...+.+
T Consensus 89 LkliR~~l~~~~~~~~-~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P--~lv~~~gG~~~L~~~l~d~~~~~~~ 165 (371)
T PF14664_consen 89 LKLIRAFLEIKKGPKE-IPRGVVRALVAIAEHEDDRLRRICLETLCELALLNP--ELVAECGGIRVLLRALIDGSFSISE 165 (371)
T ss_pred HHHHHHHHHhcCCccc-CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCH--HHHHHcCCHHHHHHHHHhccHhHHH
Confidence 9998887665432222 244889999999999889999999999999988543 4567899999999999 65556888
Q ss_pred HHHHHHHHHhCChhhHHHHHHcCcHHHHHHHH-hc------CCH--HHHHHHHHHHHHHhcCChHhHHHHHh-CCCHHHH
Q 004761 628 KAVALLANLSTVGEGRLAIAREGGIPSLVEVV-ES------GSQ--RGKENAASILLQLCLHSPKFCTLVLQ-EGAVPPL 697 (732)
Q Consensus 628 ~al~iL~nLa~~~~~r~~i~~~~~I~~Lv~lL-~~------~s~--~~~e~A~~~L~~L~~~~~~~~~~v~~-~G~i~~L 697 (732)
..+.++-.+..+|..|.-+...--+..++.-+ .. ++. +.-..+..++..+-+..+.....-.. ..++..|
T Consensus 166 ~l~~~lL~lLd~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksL 245 (371)
T PF14664_consen 166 SLLDTLLYLLDSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSL 245 (371)
T ss_pred HHHHHHHHHhCCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHH
Confidence 89999999999999888666533355554433 11 122 23344555555555544332221122 2578889
Q ss_pred HHchhcCChHHHHHHHHHHHHh
Q 004761 698 VGLSQSGTPRAKEKAQQLLSHF 719 (732)
Q Consensus 698 ~~Ll~~g~~~~k~kA~~lL~~l 719 (732)
+..++..++++++....++--+
T Consensus 246 v~~L~~p~~~ir~~Ildll~dl 267 (371)
T PF14664_consen 246 VDSLRLPNPEIRKAILDLLFDL 267 (371)
T ss_pred HHHHcCCCHHHHHHHHHHHHHH
Confidence 9999988888888877765443
|
|
| >COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.51 E-value=4.6e-05 Score=76.43 Aligned_cols=51 Identities=20% Similarity=0.385 Sum_probs=45.3
Q ss_pred CccccccCcccCCCceecCCCcccchHHHHH-HHhcCCCCCCCCCCCCCCCC
Q 004761 238 PYFRCPLSLELMIDPVIVASGQTYERVFIQK-WLDHGLNICPKTRQTLAHTN 288 (732)
Q Consensus 238 ~~f~Cpi~~~lm~dPV~~~~g~ty~r~~I~~-~~~~~~~~cP~~~~~l~~~~ 288 (732)
.+|.|+||++.|.+|+-++|||.||-.||-- |-.+....||.||+......
T Consensus 214 ~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~ 265 (271)
T COG5574 214 ADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKK 265 (271)
T ss_pred cccceeeeecccCCcccccccchhhHHHHHHHHHhhccccCchhhhhccchh
Confidence 6999999999999999999999999999999 87776677999998765443
|
|
| >KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.49 E-value=7.6e-05 Score=81.14 Aligned_cols=72 Identities=22% Similarity=0.365 Sum_probs=60.5
Q ss_pred CCCCCCccccccCcccCCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCC-----CCcccHHHHHHHHHHHHH
Q 004761 233 GVPIPPYFRCPLSLELMIDPVIVASGQTYERVFIQKWLDHGLNICPKTRQTLAHT-----NLIPNYTVKAMIENWCEE 305 (732)
Q Consensus 233 ~~~~p~~f~Cpi~~~lm~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~-----~l~pn~~l~~~i~~~~~~ 305 (732)
+..++.+|.|-||..++.+||+++|||+||+.||++.++. ...||.|+.++.+. ...+|+.++.+|..|+..
T Consensus 78 ~~~~~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld~-~~~cp~Cr~~l~e~~~~~~~~~~~r~~~~li~~F~~~ 154 (398)
T KOG4159|consen 78 PEEIRSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLDQ-ETECPLCRDELVELPALEQALSLNRLLCKLITKFLEG 154 (398)
T ss_pred CccccchhhhhhhHhhcCCCccccccccccHHHHHHHhcc-CCCCcccccccccchHHHHHHHHHHHHHHHHHHhhhh
Confidence 3457899999999999999999999999999999997774 47799999998752 344678888888888664
|
|
| >COG5369 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0014 Score=72.01 Aligned_cols=258 Identities=16% Similarity=0.132 Sum_probs=172.6
Q ss_pred HHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcC-CchHHHHHHcCCHHHHHHHHcCCC
Q 004761 463 ASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSIN-DENKAMIAEAGAIEPLIHVLKSGN 541 (732)
Q Consensus 463 ~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~-~~~k~~i~~~g~l~~Lv~lL~~~~ 541 (732)
..++-+|..+++.-..-|.-+.++...++|+.+|+.++..+.--+...+.|+... .+-+..+.+.|.+..|+.++.+.+
T Consensus 407 ~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKD 486 (743)
T COG5369 407 VAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKD 486 (743)
T ss_pred HHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcch
Confidence 3455566677766556677777888999999999987777777777788887654 455888889999999999999888
Q ss_pred HHHHHHHHHHHHHhccCchhH--HHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhccCc-h---hHHHHHhhc----h
Q 004761 542 GGAKENSAAALFSLSVLEEYK--AKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFH-E---NKARIIQAG----A 611 (732)
Q Consensus 542 ~e~~~~Aa~~L~~Ls~~~~~k--~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~-~---n~~~lv~~G----~ 611 (732)
...+.+..|+|.++-...++- -...+.-++..++++..+..-.++...+..|.|+..+. . .+..+++.. .
T Consensus 487 daLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~yl 566 (743)
T COG5369 487 DALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYL 566 (743)
T ss_pred hhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHH
Confidence 899999999999998765443 33344455689999999988999999999999997732 2 233333322 2
Q ss_pred HHHHHHhc-CCChHHHHHHHHHHHHHhCChhhHHHH-HH-cCcHHHHHHHHh----c-----CC----------------
Q 004761 612 VKHLVDLM-DPSTGMVDKAVALLANLSTVGEGRLAI-AR-EGGIPSLVEVVE----S-----GS---------------- 663 (732)
Q Consensus 612 V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~~r~~i-~~-~~~I~~Lv~lL~----~-----~s---------------- 663 (732)
...|++.+ ..++-..+..+.+|.+++.+.+....+ .+ ...+..+.++|. + |+
T Consensus 567 fk~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~v~l 646 (743)
T COG5369 567 FKRLIDKYEENNPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTIVNL 646 (743)
T ss_pred HHHHHHHHHhcCchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccceeeecc
Confidence 33344444 445555667788888887766544333 22 223333333331 0 10
Q ss_pred ----------------------------HHHHHHHHHHHHHHhcC---------ChHhHHHHHhCCCHHHHHHchhcCCh
Q 004761 664 ----------------------------QRGKENAASILLQLCLH---------SPKFCTLVLQEGAVPPLVGLSQSGTP 706 (732)
Q Consensus 664 ----------------------------~~~~e~A~~~L~~L~~~---------~~~~~~~v~~~G~i~~L~~Ll~~g~~ 706 (732)
.+.-....|+..++... +.+-++.+.+.|.-..|..+....++
T Consensus 647 ~e~~d~f~r~~~~~p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtratveR~~iL~~~G~~e~l~k~q~~~Sl 726 (743)
T COG5369 647 SENSDKFKRLVLTTPHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVTRATVERIQILCANGIREWLVKIQAKDSL 726 (743)
T ss_pred cccccccccceecCCCccccccccCCCchhhhhccceEEEecccCccCCccchhhHHHHHHHHHccHHHHHHHHhccCcH
Confidence 11122233333333221 12345556667777777777767778
Q ss_pred HHHHHHHHHHHHhh
Q 004761 707 RAKEKAQQLLSHFR 720 (732)
Q Consensus 707 ~~k~kA~~lL~~l~ 720 (732)
.+++|+..+|.+++
T Consensus 727 ~vrek~~taL~~l~ 740 (743)
T COG5369 727 IVREKIGTALENLR 740 (743)
T ss_pred HHHHHHHHHHHhhh
Confidence 99999999999876
|
|
| >PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway [] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.023 Score=64.15 Aligned_cols=242 Identities=18% Similarity=0.180 Sum_probs=157.9
Q ss_pred ccCchHHHHHHHh----------cCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccC-----CHHHHHH
Q 004761 442 TTTPYVKKLIEDL----------NSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSE-----AQLTQEH 506 (732)
Q Consensus 442 ~~~~~i~~Lv~~L----------~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~-----~~~v~~~ 506 (732)
..+..+..|++.- ...++++..+|+++|+|+...++..|..+.+.|+.+.++..|+.. +.++.--
T Consensus 19 ~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~d~~Fl 98 (446)
T PF10165_consen 19 FTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQPSDVEFL 98 (446)
T ss_pred ccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCCChhHHHH
Confidence 3344556666554 245678899999999999999999999999999999999999865 6788888
Q ss_pred HHHHHHHhhcC-CchHHHHH-HcCCHHHHHHHHcC-----------------CCHHHHHHHHHHHHHhccCchhHHHHHh
Q 004761 507 AVTALLNLSIN-DENKAMIA-EAGAIEPLIHVLKS-----------------GNGGAKENSAAALFSLSVLEEYKAKIGR 567 (732)
Q Consensus 507 A~~~L~nLs~~-~~~k~~i~-~~g~l~~Lv~lL~~-----------------~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~ 567 (732)
..++|.-++.. ...+..++ +.+++..|+..|.. .+.+....++.++||+.........-..
T Consensus 99 ~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~~~~ 178 (446)
T PF10165_consen 99 DSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVPEEF 178 (446)
T ss_pred HHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccchhh
Confidence 88888877654 45566666 45777777776532 0234567888999999764322211011
Q ss_pred cchHHHHHHhhcC---------CCHHHHHHHHHHHHHhccCc-hh-------HH----HHHhhchHHHHHHhc----C--
Q 004761 568 SGAVKALVDLLGS---------GTLRGRKDAATALFNLSIFH-EN-------KA----RIIQAGAVKHLVDLM----D-- 620 (732)
Q Consensus 568 ~g~i~~Lv~lL~~---------~~~~~~~~Al~aL~nLs~~~-~n-------~~----~lv~~G~V~~Ll~lL----~-- 620 (732)
.+.++.++.++.. ........++.+|.|+=... .. .. ......++..|+.+| .
T Consensus 179 ~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~ 258 (446)
T PF10165_consen 179 SPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDKY 258 (446)
T ss_pred hHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHhc
Confidence 1333444433321 12345667778888772110 00 00 112345777788887 1
Q ss_pred CC---hHHHHHHHHHHHHHhCCh-hhHHHHHH---------------cCc-HHHHHHHHhcCCHHHHHHHHHHHHHHhcC
Q 004761 621 PS---TGMVDKAVALLANLSTVG-EGRLAIAR---------------EGG-IPSLVEVVESGSQRGKENAASILLQLCLH 680 (732)
Q Consensus 621 ~~---~~l~e~al~iL~nLa~~~-~~r~~i~~---------------~~~-I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~ 680 (732)
.. .......+.+|.+++... ..|..+.. .+. -..|++++-+..+..+..+...|+.||..
T Consensus 259 ~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~~~~~k~~vaellf~Lc~~ 338 (446)
T PF10165_consen 259 EALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSPDPQLKDAVAELLFVLCKE 338 (446)
T ss_pred CcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCCCchHHHHHHHHHHHHHhh
Confidence 11 245666778888888763 34443332 222 57888998887789999999999999986
Q ss_pred ChH
Q 004761 681 SPK 683 (732)
Q Consensus 681 ~~~ 683 (732)
+..
T Consensus 339 d~~ 341 (446)
T PF10165_consen 339 DAS 341 (446)
T ss_pred hHH
Confidence 544
|
It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion. |
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.45 E-value=5.9e-05 Score=80.17 Aligned_cols=52 Identities=25% Similarity=0.485 Sum_probs=47.2
Q ss_pred cccccCcccCCCceecC-CCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCccc
Q 004761 240 FRCPLSLELMIDPVIVA-SGQTYERVFIQKWLDHGLNICPKTRQTLAHTNLIPN 292 (732)
Q Consensus 240 f~Cpi~~~lm~dPV~~~-~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn 292 (732)
+.|.|++++-++||+-+ +||.|||+-|++++.+. .+||.|+++|+.++|+|-
T Consensus 1 m~CaISgEvP~~PVvS~~Sg~vfEkrLIEqyI~e~-G~DPIt~~pLs~eelV~I 53 (506)
T KOG0289|consen 1 MVCAISGEVPEEPVVSPVSGHVFEKRLIEQYIAET-GKDPITNEPLSIEELVEI 53 (506)
T ss_pred CeecccCCCCCCccccccccchHHHHHHHHHHHHc-CCCCCCCCcCCHHHeeec
Confidence 57999999999999975 99999999999999875 689999999999888873
|
|
| >PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00013 Score=60.41 Aligned_cols=44 Identities=32% Similarity=0.604 Sum_probs=34.7
Q ss_pred CCCccccccCcccCCCc-------------eecCCCcccchHHHHHHHhcCCCCCCCCC
Q 004761 236 IPPYFRCPLSLELMIDP-------------VIVASGQTYERVFIQKWLDHGLNICPKTR 281 (732)
Q Consensus 236 ~p~~f~Cpi~~~lm~dP-------------V~~~~g~ty~r~~I~~~~~~~~~~cP~~~ 281 (732)
++++- |+||++-|.|| +..+|||.|-..||.+|+... .+||.||
T Consensus 17 ~~~d~-C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~-~~CP~CR 73 (73)
T PF12678_consen 17 IADDN-CAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQN-NTCPLCR 73 (73)
T ss_dssp SCCSB-ETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTS-SB-TTSS
T ss_pred CcCCc-ccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcC-CcCCCCC
Confidence 44443 99999999554 334799999999999999876 5999996
|
Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D .... |
| >KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.017 Score=60.02 Aligned_cols=275 Identities=15% Similarity=0.138 Sum_probs=183.7
Q ss_pred CchHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhH----HHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCc
Q 004761 444 TPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENR----MIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDE 519 (732)
Q Consensus 444 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r----~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~ 519 (732)
....+.|-..|..++..++.-+++.+.-+..+++.|- ..++++|..+.++.++-..|.++...|...|..++..+.
T Consensus 81 pnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrialfpa 160 (524)
T KOG4413|consen 81 PNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALFPA 160 (524)
T ss_pred hhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHH
Confidence 3445667777778888888888888777776655332 234577999999999999999999999999999998888
Q ss_pred hHHHHHHcCCHHHHHH--HHcCCCHHHHHHHHHHHHHhcc-CchhHHHHHhcchHHHHHHhhcC-CCHHHHHHHHHHHHH
Q 004761 520 NKAMIAEAGAIEPLIH--VLKSGNGGAKENSAAALFSLSV-LEEYKAKIGRSGAVKALVDLLGS-GTLRGRKDAATALFN 595 (732)
Q Consensus 520 ~k~~i~~~g~l~~Lv~--lL~~~~~e~~~~Aa~~L~~Ls~-~~~~k~~i~~~g~i~~Lv~lL~~-~~~~~~~~Al~aL~n 595 (732)
.-..+.+...++++-. +--..+.-+|......+..+.+ .+........+|.+..|..=|+. .+.-+...++...+.
T Consensus 161 aleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvte 240 (524)
T KOG4413|consen 161 ALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTE 240 (524)
T ss_pred HHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHH
Confidence 8888877666665432 2223344555556666666654 33444455566887777666664 455567778888889
Q ss_pred hccCchhHHHHHhhchHHHHHHhc---CCChHHHHHHHHHHH----HHhCChhhHHHHHHc--CcHHHHHHHHhcCCHHH
Q 004761 596 LSIFHENKARIIQAGAVKHLVDLM---DPSTGMVDKAVALLA----NLSTVGEGRLAIARE--GGIPSLVEVVESGSQRG 666 (732)
Q Consensus 596 Ls~~~~n~~~lv~~G~V~~Ll~lL---~~~~~l~e~al~iL~----nLa~~~~~r~~i~~~--~~I~~Lv~lL~~~s~~~ 666 (732)
|...+..++.+.+.|+++.+..++ +.++--.-.++.... +.+-....-+++.+. -+|....+++...++..
T Consensus 241 LaeteHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpda 320 (524)
T KOG4413|consen 241 LAETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDA 320 (524)
T ss_pred HHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchH
Confidence 998888999999999999999999 344433444444333 333222222333332 24666677788889999
Q ss_pred HHHHHHHHHHHhcCChHhHHHHHhCCC--HHHHHHchhcCChHHH-HHHHHHHHHh
Q 004761 667 KENAASILLQLCLHSPKFCTLVLQEGA--VPPLVGLSQSGTPRAK-EKAQQLLSHF 719 (732)
Q Consensus 667 ~e~A~~~L~~L~~~~~~~~~~v~~~G~--i~~L~~Ll~~g~~~~k-~kA~~lL~~l 719 (732)
.+.|+.+|..|.+ +.+..+.+...|- ...|+.-..+.+..++ +.|..+|..+
T Consensus 321 ieaAiDalGilGS-nteGadlllkTgppaaehllarafdqnahakqeaaihaLaaI 375 (524)
T KOG4413|consen 321 IEAAIDALGILGS-NTEGADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAI 375 (524)
T ss_pred HHHHHHHHHhccC-CcchhHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHh
Confidence 9999999999988 4455666666653 4455544444443333 3344455554
|
|
| >KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0043 Score=69.79 Aligned_cols=266 Identities=12% Similarity=0.079 Sum_probs=173.8
Q ss_pred CchHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHh-cCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCchHH
Q 004761 444 TPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGN-CGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKA 522 (732)
Q Consensus 444 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~-~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k~ 522 (732)
.-.+++++++.+++++.++..|+.++....-... +..+.. ..++..|..+-...+++++.+.+++|.-|-.... .
T Consensus 173 ~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~--qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~--d 248 (885)
T KOG2023|consen 173 NIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQT--QALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRP--D 248 (885)
T ss_pred HHhHHHHHHHHhCCChhHHHHHHhhhhheeecCc--HHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcH--H
Confidence 5568999999999999999999999988765432 333332 2466667666677899999999999877743211 1
Q ss_pred HHH--HcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHHhc--chHHHHHHhhcCCC----------------
Q 004761 523 MIA--EAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRS--GAVKALVDLLGSGT---------------- 582 (732)
Q Consensus 523 ~i~--~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~--g~i~~Lv~lL~~~~---------------- 582 (732)
.++ -.+.++.++..-++.+.++...|+-....++..+-.+..+... ..+|.|+.=+...+
T Consensus 249 kl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vp 328 (885)
T KOG2023|consen 249 KLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVP 328 (885)
T ss_pred hcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCC
Confidence 222 2356777777777888889999999999998887777777654 67888875333211
Q ss_pred -------H---------------------------------HHHHHHHHHHHHhccCchhHHHHHhhchHHHHHHhc---
Q 004761 583 -------L---------------------------------RGRKDAATALFNLSIFHENKARIIQAGAVKHLVDLM--- 619 (732)
Q Consensus 583 -------~---------------------------------~~~~~Al~aL~nLs~~~~n~~~lv~~G~V~~Ll~lL--- 619 (732)
| ..++..+.+|--| ..+....+++.++.+|
T Consensus 329 DreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVL-------anvf~~elL~~l~PlLk~~ 401 (885)
T KOG2023|consen 329 DREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVL-------ANVFGDELLPILLPLLKEH 401 (885)
T ss_pred chhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHH-------HHhhHHHHHHHHHHHHHHH
Confidence 0 1122222222222 1223345566666666
Q ss_pred --CCChHHHHHHHHHHHHHhCChhhHHHHHHc--CcHHHHHHHHhcCCHHHHHHHHHHHHHHhcC--ChHhHHHHHhCCC
Q 004761 620 --DPSTGMVDKAVALLANLSTVGEGRLAIARE--GGIPSLVEVVESGSQRGKENAASILLQLCLH--SPKFCTLVLQEGA 693 (732)
Q Consensus 620 --~~~~~l~e~al~iL~nLa~~~~~r~~i~~~--~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~--~~~~~~~v~~~G~ 693 (732)
+++-.++|.++-+|+.+|.. +-.-+..+ ..||-++.+|.+..+-+|.-.||+|.+.+.. ... ...... .+
T Consensus 402 L~~~~W~vrEagvLAlGAIAEG--cM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~-~~~~f~-pv 477 (885)
T KOG2023|consen 402 LSSEEWKVREAGVLALGAIAEG--CMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDS-RDEYFK-PV 477 (885)
T ss_pred cCcchhhhhhhhHHHHHHHHHH--HhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCC-hHhhhH-HH
Confidence 44556677777777777653 22223332 1478888888888899999999999887663 111 111111 23
Q ss_pred HHHHHHchhcCChHHHHHHHHHHHHhhcccc
Q 004761 694 VPPLVGLSQSGTPRAKEKAQQLLSHFRNQRE 724 (732)
Q Consensus 694 i~~L~~Ll~~g~~~~k~kA~~lL~~l~~~~~ 724 (732)
+..|...+-.++.++++.|..+...+.+...
T Consensus 478 L~~ll~~llD~NK~VQEAAcsAfAtleE~A~ 508 (885)
T KOG2023|consen 478 LEGLLRRLLDSNKKVQEAACSAFATLEEEAG 508 (885)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHhcc
Confidence 4445555557889999999999988877643
|
|
| >PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00037 Score=50.66 Aligned_cols=40 Identities=38% Similarity=0.483 Sum_probs=37.6
Q ss_pred hhhHHHHHHcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Q 004761 640 GEGRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCL 679 (732)
Q Consensus 640 ~~~r~~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~ 679 (732)
++.+..+++.|+++.|+++|.++++.++++|+++|.+||+
T Consensus 2 ~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 2 PENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 5788999999999999999999999999999999999984
|
Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B .... |
| >KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00014 Score=80.19 Aligned_cols=66 Identities=20% Similarity=0.441 Sum_probs=56.6
Q ss_pred CCCccccccCcccCCCcee-cCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCcc-cHHHHHHHHHH
Q 004761 236 IPPYFRCPLSLELMIDPVI-VASGQTYERVFIQKWLDHGLNICPKTRQTLAHTNLIP-NYTVKAMIENW 302 (732)
Q Consensus 236 ~p~~f~Cpi~~~lm~dPV~-~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~p-n~~l~~~i~~~ 302 (732)
+.+++.||+|..++.||+. +.|||.||+.||..|+.. +..||.|++.+......| -..+++.+..|
T Consensus 18 ~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~-~~~cp~~~~~~~~~~~~~~~~~~~~~~~~l 85 (391)
T KOG0297|consen 18 LDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSN-HQKCPVCRQELTQAEELPVPRALRRELLKL 85 (391)
T ss_pred CcccccCccccccccCCCCCCCCCCcccccccchhhcc-CcCCcccccccchhhccCchHHHHHHHHhc
Confidence 5678999999999999999 599999999999999988 689999999888776666 34567777766
|
|
| >PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0013 Score=67.22 Aligned_cols=184 Identities=15% Similarity=0.078 Sum_probs=116.5
Q ss_pred cCCCHHHHHHHHHHHHHhccCc---hhHHHHHhc--chHHHHHHhhcCCCHHHHHHHHHHHHHhccCchhHHHHHhhchH
Q 004761 538 KSGNGGAKENSAAALFSLSVLE---EYKAKIGRS--GAVKALVDLLGSGTLRGRKDAATALFNLSIFHENKARIIQAGAV 612 (732)
Q Consensus 538 ~~~~~e~~~~Aa~~L~~Ls~~~---~~k~~i~~~--g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~n~~~lv~~G~V 612 (732)
.+.+.+.+..|+-.|..+.... .....+... ..+..+...+.+....+.+.|+.++..|+..-.....-.-..++
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l 96 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILL 96 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 4567888888888888876533 223333222 45566777777666778899999999998765544433455688
Q ss_pred HHHHHhc-CCChHHHHHHHHHHHHHhCChhhHHHHHHcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCh---HhHH-H
Q 004761 613 KHLVDLM-DPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCLHSP---KFCT-L 687 (732)
Q Consensus 613 ~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~~r~~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~---~~~~-~ 687 (732)
|.|++.+ +....+.+.|..+|..++..-..-..+ .++.+...+.+.++..+..++..|..+....+ .... .
T Consensus 97 ~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~----~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~ 172 (228)
T PF12348_consen 97 PPLLKKLGDSKKFIREAANNALDAIIESCSYSPKI----LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKS 172 (228)
T ss_dssp HHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HH----HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--H
T ss_pred HHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHH----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhccc
Confidence 9999999 777788899999999988754411111 14555666778899999999999988877544 1111 1
Q ss_pred HHhCCCHHHHHHchhcCChHHHHHHHHHHHHhhccccC
Q 004761 688 VLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFRNQREG 725 (732)
Q Consensus 688 v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~~~~~ 725 (732)
..-..+++.+...+.++++.+|+.|..++..+....+.
T Consensus 173 ~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~ 210 (228)
T PF12348_consen 173 AFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPE 210 (228)
T ss_dssp HHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-H
T ss_pred chHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCH
Confidence 11134688899999999999999999999998766544
|
The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A. |
| >KOG0212 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0047 Score=68.34 Aligned_cols=232 Identities=18% Similarity=0.185 Sum_probs=157.6
Q ss_pred chHHHHHHHhcCCCHHHHHHHHH----HHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCch
Q 004761 445 PYVKKLIEDLNSTSNEIQASAAA----ELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDEN 520 (732)
Q Consensus 445 ~~i~~Lv~~L~s~~~~~~~~Al~----~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~ 520 (732)
...+-|...|...+++++..+=. .|+.+.. ++.. +--...++.++.-+.++++.++..|+..|..+..-...
T Consensus 208 ~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s-~P~s---~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~ 283 (675)
T KOG0212|consen 208 SLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRS-SPSS---MDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGR 283 (675)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhc-Cccc---cCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCc
Confidence 34567888888888888753333 3333332 2211 11125788899999999999999999988877654444
Q ss_pred HHHHHHcCCHHHHHHHHcCCCH-HHHHHHHHH---HHHhccCchhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 004761 521 KAMIAEAGAIEPLIHVLKSGNG-GAKENSAAA---LFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNL 596 (732)
Q Consensus 521 k~~i~~~g~l~~Lv~lL~~~~~-e~~~~Aa~~---L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nL 596 (732)
.-...-.|.+..++..+.+... .+++.+..+ |..+......+..+--...+..|...+.++....+..++..+..|
T Consensus 284 ~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l 363 (675)
T KOG0212|consen 284 DLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILL 363 (675)
T ss_pred chhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHH
Confidence 3444456777777777765543 344443332 233333333332222224678888889999999999999999999
Q ss_pred ccCchhHHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCChhhHHHHHHcCcHHHHHHHHhcCCHHHHHHHHHHHH
Q 004761 597 SIFHENKARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVESGSQRGKENAASILL 675 (732)
Q Consensus 597 s~~~~n~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~~r~~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L~ 675 (732)
-...+++...-...+.+.|+.-| +.+..++..++.+++++|..+....- -.++..|+++......-....+.-++.
T Consensus 364 ~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~~~---~~fl~sLL~~f~e~~~~l~~Rg~lIIR 440 (675)
T KOG0212|consen 364 YHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNSPNL---RKFLLSLLEMFKEDTKLLEVRGNLIIR 440 (675)
T ss_pred HhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcccccH---HHHHHHHHHHHhhhhHHHHhhhhHHHH
Confidence 88878877777788999999999 78889999999999999998765411 123455555555555556777888888
Q ss_pred HHhcC-ChH
Q 004761 676 QLCLH-SPK 683 (732)
Q Consensus 676 ~L~~~-~~~ 683 (732)
.||.. +++
T Consensus 441 qlC~lL~aE 449 (675)
T KOG0212|consen 441 QLCLLLNAE 449 (675)
T ss_pred HHHHHhCHH
Confidence 88873 554
|
|
| >COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.012 Score=61.03 Aligned_cols=226 Identities=16% Similarity=0.140 Sum_probs=157.5
Q ss_pred HhhccCCHHHHHHHHHHHHHhhcCCchHHHHH-HcCCHHHHHHHHcC--CCHHHHHHHHHHHHHhccCchhHHHHHhc-c
Q 004761 494 SLLYSEAQLTQEHAVTALLNLSINDENKAMIA-EAGAIEPLIHVLKS--GNGGAKENSAAALFSLSVLEEYKAKIGRS-G 569 (732)
Q Consensus 494 ~lL~s~~~~v~~~A~~~L~nLs~~~~~k~~i~-~~g~l~~Lv~lL~~--~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~-g 569 (732)
+++.+=++-++.-|+.+|.++....+.|..+- +...-..+++++++ |..+.+.+++-+++-|+........|-.. .
T Consensus 156 kl~Q~i~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~d 235 (432)
T COG5231 156 KLSQLIDFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDD 235 (432)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 33444456678899999999999887766444 55566778888876 45789999999999999888777666554 6
Q ss_pred hHHHHHHhhcCCC-HHHHHHHHHHHHHhccCc--hhHHHHHhhchHHHHHHhc----CCChHHHHHH-------------
Q 004761 570 AVKALVDLLGSGT-LRGRKDAATALFNLSIFH--ENKARIIQAGAVKHLVDLM----DPSTGMVDKA------------- 629 (732)
Q Consensus 570 ~i~~Lv~lL~~~~-~~~~~~Al~aL~nLs~~~--~n~~~lv~~G~V~~Ll~lL----~~~~~l~e~a------------- 629 (732)
.|.-|+.+.+... ..+.+.++.++.|++... +....+.-.|-+.+-++.| ..+.+++...
T Consensus 236 li~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~ 315 (432)
T COG5231 236 LINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKK 315 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhh
Confidence 7888888888653 567788899999998733 3444555566455555555 2333332211
Q ss_pred HHHH----HHH-----hCCh---------hhHHHHHHcC--cHHHHHHHHhcCCHH-HHHHHHHHHHHHhcCChHhHHHH
Q 004761 630 VALL----ANL-----STVG---------EGRLAIAREG--GIPSLVEVVESGSQR-GKENAASILLQLCLHSPKFCTLV 688 (732)
Q Consensus 630 l~iL----~nL-----a~~~---------~~r~~i~~~~--~I~~Lv~lL~~~s~~-~~e~A~~~L~~L~~~~~~~~~~v 688 (732)
+.+. ..| +-.| .+...+.+.+ .+..|.++++...+. --.-|+.-+.++.+..|+....+
T Consensus 316 l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl 395 (432)
T COG5231 316 LCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVL 395 (432)
T ss_pred hhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHH
Confidence 1111 111 1111 1233444433 478888888876554 34457788888888889999999
Q ss_pred HhCCCHHHHHHchhcCChHHHHHHHHHHHHh
Q 004761 689 LQEGAVPPLVGLSQSGTPRAKEKAQQLLSHF 719 (732)
Q Consensus 689 ~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l 719 (732)
...|+-..++.|+.+.++++|-.|..++..+
T Consensus 396 ~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~ 426 (432)
T COG5231 396 SKYGVKEIIMNLINHDDDDVKFEALQALQTC 426 (432)
T ss_pred HHhhhHHHHHHHhcCCCchhhHHHHHHHHHH
Confidence 9999999999999999999999998888765
|
|
| >KOG2734 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.058 Score=58.43 Aligned_cols=237 Identities=16% Similarity=0.146 Sum_probs=165.5
Q ss_pred CchHHHHHHHhcCCCHHHHHHHHHHHHHHhccC-----hhh----HHHHHhcCCHHHHHHhhccCC------HHHHHHHH
Q 004761 444 TPYVKKLIEDLNSTSNEIQASAAAELRLLAKHN-----MEN----RMIIGNCGAIPPLLSLLYSEA------QLTQEHAV 508 (732)
Q Consensus 444 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~-----~~~----r~~i~~~G~I~~Lv~lL~s~~------~~v~~~A~ 508 (732)
-..|+.|+++|.+.|.++....+..|..|+..+ .+. -..+++.+.++.|++-+..=| ..-..+++
T Consensus 124 ln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvkeea~gv~~~L 203 (536)
T KOG2734|consen 124 LNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKEEADGVHNTL 203 (536)
T ss_pred hccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchhhhhhhHHHH
Confidence 456889999999999999999999999998432 222 234555678888888775322 33456777
Q ss_pred HHHHHhhcC-CchHHHHHHcCCHHHHHHHHcCC--CHHHHHHHHHHHHHhccCc-hhHHHHHhcchHHHHHHhhc----C
Q 004761 509 TALLNLSIN-DENKAMIAEAGAIEPLIHVLKSG--NGGAKENSAAALFSLSVLE-EYKAKIGRSGAVKALVDLLG----S 580 (732)
Q Consensus 509 ~~L~nLs~~-~~~k~~i~~~g~l~~Lv~lL~~~--~~e~~~~Aa~~L~~Ls~~~-~~k~~i~~~g~i~~Lv~lL~----~ 580 (732)
.++-|+..- +.....+++.|.+.-|+..+... -...+.+|.-+|.-+..+. +++..++...++..++.-+. .
T Consensus 204 ~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~la~yk~~ 283 (536)
T KOG2734|consen 204 AVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQLAVYKRH 283 (536)
T ss_pred HHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhhcchhhcc
Confidence 888888654 55577777888777777655433 2446677777777666544 58888888877777776543 1
Q ss_pred C-----CHHHHHHHHHHHHHhccCchhHHHHHhhchHHHHHHhcCCChHHHHHHHHHHHHHhCChhhH---HHHHHcCcH
Q 004761 581 G-----TLRGRKDAATALFNLSIFHENKARIIQAGAVKHLVDLMDPSTGMVDKAVALLANLSTVGEGR---LAIAREGGI 652 (732)
Q Consensus 581 ~-----~~~~~~~Al~aL~nLs~~~~n~~~lv~~G~V~~Ll~lL~~~~~l~e~al~iL~nLa~~~~~r---~~i~~~~~I 652 (732)
+ ..+..++-..+|+.+...+.|+.+++...+++...-++....-..-.++.+|-....+++|. ..+++..|+
T Consensus 284 dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~Kk~sr~SalkvLd~am~g~~gt~~C~kfVe~lGL 363 (536)
T KOG2734|consen 284 DPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLREKKVSRGSALKVLDHAMFGPEGTPNCNKFVEILGL 363 (536)
T ss_pred CCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHHHHHhhhhHHHHHHHHHhCCCchHHHHHHHHHHhH
Confidence 1 23556777788888888999999999988887655555323334556888898887777654 566777787
Q ss_pred HHHHHHH-hcC---------CHHHHHHHHHHHHHHhcC
Q 004761 653 PSLVEVV-ESG---------SQRGKENAASILLQLCLH 680 (732)
Q Consensus 653 ~~Lv~lL-~~~---------s~~~~e~A~~~L~~L~~~ 680 (732)
..+..+. +.+ -.+..|+.+.+|+.+-.+
T Consensus 364 rtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~~ 401 (536)
T KOG2734|consen 364 RTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLRN 401 (536)
T ss_pred HHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHHh
Confidence 7776643 222 245678889999888774
|
|
| >COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.00028 Score=71.34 Aligned_cols=67 Identities=22% Similarity=0.369 Sum_probs=57.4
Q ss_pred cccccCcccCCCceec-CCCcccchHHHHHHHhcCCCCCCCCCCC-CCCCCCcccHHHHHHHHHHHHHc
Q 004761 240 FRCPLSLELMIDPVIV-ASGQTYERVFIQKWLDHGLNICPKTRQT-LAHTNLIPNYTVKAMIENWCEEN 306 (732)
Q Consensus 240 f~Cpi~~~lm~dPV~~-~~g~ty~r~~I~~~~~~~~~~cP~~~~~-l~~~~l~pn~~l~~~i~~~~~~~ 306 (732)
+.||+|..|.+.|+-+ +|||+||..||+..+...-..||.|... +--+.|+|++..+..|+.+...+
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~rkdvlld~l~pD~dk~~EvE~~lkkq 343 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSRKDVLLDGLTPDIDKKLEVEKALKKQ 343 (427)
T ss_pred ccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCCcccccchhhccCccHHHHHHHHHHHHHH
Confidence 8999999999999988 6999999999999887665889999763 23467999999999998887644
|
|
| >KOG2973 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.036 Score=57.57 Aligned_cols=224 Identities=17% Similarity=0.175 Sum_probs=145.1
Q ss_pred chHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCchHHHH
Q 004761 445 PYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAMI 524 (732)
Q Consensus 445 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k~~i 524 (732)
..++.+.+++....+ -..|+.+|.+++... .-|..+... ++..++..+..+....-...+.+|.||+.++.....+
T Consensus 44 ~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~-~l~~~ll~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~l 119 (353)
T KOG2973|consen 44 ALLKDLTQLLKDLDP--AEPAATALVNLSQKE-ELRKKLLQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAAL 119 (353)
T ss_pred hhHHHHHHHccCccc--ccHHHHHHHHHHhhH-HHHHHHHHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHH
Confidence 346777777766554 567889999999654 566666665 8888888888776777888899999999987653333
Q ss_pred HH--c----CCHHHHH-HHHcCC-CH-HHHHHHHHHHHHhccCchhHHHHHhcch--HHHHHHhhcCCCHHH-HHHHHHH
Q 004761 525 AE--A----GAIEPLI-HVLKSG-NG-GAKENSAAALFSLSVLEEYKAKIGRSGA--VKALVDLLGSGTLRG-RKDAATA 592 (732)
Q Consensus 525 ~~--~----g~l~~Lv-~lL~~~-~~-e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~--i~~Lv~lL~~~~~~~-~~~Al~a 592 (732)
.. . .++..++ .....+ +. .--.+.|.++.+|+.....|..+..... +..++.+-. .+..+ +...+.+
T Consensus 120 l~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nls~~~~gR~l~~~~k~~p~~kll~ft~-~~s~vRr~Gvagt 198 (353)
T KOG2973|consen 120 LTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANLSQFEAGRKLLLEPKRFPDQKLLPFTS-EDSQVRRGGVAGT 198 (353)
T ss_pred HHhcccccccchHHHHHHHhCcccccccchhHHHHHHHHHhhhhhhhhHhcchhhhhHhhhhcccc-cchhhhccchHHH
Confidence 21 1 3344444 444433 21 2334677888899998888888776542 233333333 33333 4457789
Q ss_pred HHHhccCchhHHHHHhh--chHHHHH---------------------Hhc------CCChHHHHHHHHHHHHHhCChhhH
Q 004761 593 LFNLSIFHENKARIIQA--GAVKHLV---------------------DLM------DPSTGMVDKAVALLANLSTVGEGR 643 (732)
Q Consensus 593 L~nLs~~~~n~~~lv~~--G~V~~Ll---------------------~lL------~~~~~l~e~al~iL~nLa~~~~~r 643 (732)
|.|.|....+...++.. .+.|.++ ++| ++++.+...-+.+|..||.+..||
T Consensus 199 lkN~cFd~~~h~~lL~e~~~lLp~iLlPlagpee~sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~GR 278 (353)
T KOG2973|consen 199 LKNCCFDAKLHEVLLDESINLLPAILLPLAGPEELSEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRAGR 278 (353)
T ss_pred HHhhhccchhHHHHhcchHHHHHHHHhhcCCccccCHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhHhH
Confidence 99999998888877763 3334332 222 124567778889999999999999
Q ss_pred HHHHHcCcHHHHHHHHhc-CCHHHHHHHHHH
Q 004761 644 LAIAREGGIPSLVEVVES-GSQRGKENAASI 673 (732)
Q Consensus 644 ~~i~~~~~I~~Lv~lL~~-~s~~~~e~A~~~ 673 (732)
+.+..-|+-+.+-++=.. .+++..+.+-.+
T Consensus 279 e~lR~kgvYpilRElhk~e~ded~~~ace~v 309 (353)
T KOG2973|consen 279 EVLRSKGVYPILRELHKWEEDEDIREACEQV 309 (353)
T ss_pred HHHHhcCchHHHHHHhcCCCcHHHHHHHHHH
Confidence 998876655544443333 345554433333
|
|
| >PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway [] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.037 Score=62.44 Aligned_cols=257 Identities=16% Similarity=0.151 Sum_probs=161.1
Q ss_pred HHHHHHHhccChhhHHHHHhcCCHHHHHHhh----------ccCCHHHHHHHHHHHHHhhcC-CchHHHHHHcCCHHHHH
Q 004761 466 AAELRLLAKHNMENRMIIGNCGAIPPLLSLL----------YSEAQLTQEHAVTALLNLSIN-DENKAMIAEAGAIEPLI 534 (732)
Q Consensus 466 l~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL----------~s~~~~v~~~A~~~L~nLs~~-~~~k~~i~~~g~l~~Lv 534 (732)
+..|+.++++. .+-.-+....++..|+.+- ...+..+...|+.+|.|+-.. +..|..+.+.|+.+.++
T Consensus 2 L~~LRiLsRd~-~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~ 80 (446)
T PF10165_consen 2 LETLRILSRDP-TGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLC 80 (446)
T ss_pred HHHHHHHccCc-ccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHH
Confidence 45566666442 3444444444555555544 345789999999999999776 55688888999999999
Q ss_pred HHHcCC-----CHHHHHHHHHHHHHhcc-CchhHHHHHhc-chHHHHHHhhcC-----------------CCHHHHHHHH
Q 004761 535 HVLKSG-----NGGAKENSAAALFSLSV-LEEYKAKIGRS-GAVKALVDLLGS-----------------GTLRGRKDAA 590 (732)
Q Consensus 535 ~lL~~~-----~~e~~~~Aa~~L~~Ls~-~~~~k~~i~~~-g~i~~Lv~lL~~-----------------~~~~~~~~Al 590 (732)
..|+.. +.+.......+||-++. ..+.+..+... +++..++..|.. ........++
T Consensus 81 ~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiL 160 (446)
T PF10165_consen 81 ERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEIL 160 (446)
T ss_pred HHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHH
Confidence 999987 68888899999988875 44555555544 777777765531 1234567899
Q ss_pred HHHHHhccCchhHHHHHhhc----hHHHHHHhc------CCChHHHHHHHHHHHHHhC-Chhh-------HHHH----HH
Q 004761 591 TALFNLSIFHENKARIIQAG----AVKHLVDLM------DPSTGMVDKAVALLANLST-VGEG-------RLAI----AR 648 (732)
Q Consensus 591 ~aL~nLs~~~~n~~~lv~~G----~V~~Ll~lL------~~~~~l~e~al~iL~nLa~-~~~~-------r~~i----~~ 648 (732)
+.++|+..+......--..+ ++..|..++ .+.......++.+|.|+-- +... ...+ ..
T Consensus 161 KllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~ 240 (446)
T PF10165_consen 161 KLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDN 240 (446)
T ss_pred HHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCC
Confidence 99999987544322211223 334444441 1223455667777777621 1111 0011 11
Q ss_pred cCcHHHHHHHHhc----CC----HHHHHHHHHHHHHHhcCChHhHHHHHh----------------CCCHHHHHHchhcC
Q 004761 649 EGGIPSLVEVVES----GS----QRGKENAASILLQLCLHSPKFCTLVLQ----------------EGAVPPLVGLSQSG 704 (732)
Q Consensus 649 ~~~I~~Lv~lL~~----~s----~~~~e~A~~~L~~L~~~~~~~~~~v~~----------------~G~i~~L~~Ll~~g 704 (732)
...+..|+.+|+. .. .+.-.-.+.+|..++..+...++.+.. .++-..|+.++.+.
T Consensus 241 ~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~ 320 (446)
T PF10165_consen 241 MDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSP 320 (446)
T ss_pred hHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCC
Confidence 2246777777643 11 133444566777777765554444432 24567899999998
Q ss_pred ChHHHHHHHHHHHHhhccc
Q 004761 705 TPRAKEKAQQLLSHFRNQR 723 (732)
Q Consensus 705 ~~~~k~kA~~lL~~l~~~~ 723 (732)
.+.+|..++++|=.+.+..
T Consensus 321 ~~~~k~~vaellf~Lc~~d 339 (446)
T PF10165_consen 321 DPQLKDAVAELLFVLCKED 339 (446)
T ss_pred CchHHHHHHHHHHHHHhhh
Confidence 8999999999997776543
|
It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion. |
| >KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.046 Score=64.41 Aligned_cols=253 Identities=21% Similarity=0.197 Sum_probs=156.7
Q ss_pred HHHHHHhc-CCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCchHHHHHH
Q 004761 448 KKLIEDLN-STSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAMIAE 526 (732)
Q Consensus 448 ~~Lv~~L~-s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k~~i~~ 526 (732)
+-++..|. ...+.++.-|+..+..++... ++-.-+++.|.+..|+.+|.+ -+..++.++.+|..|+.+.+-...-++
T Consensus 1774 ~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~-~Cv~~~a~~~vL~~LL~lLHS-~PS~R~~vL~vLYAL~S~~~i~keA~~ 1851 (2235)
T KOG1789|consen 1774 PLLITYLRCRKHPKLQILALQVILLATANK-ECVTDLATCNVLTTLLTLLHS-QPSMRARVLDVLYALSSNGQIGKEALE 1851 (2235)
T ss_pred HHHHHHHHHcCCchHHHHHHHHHHHHhccc-HHHHHHHhhhHHHHHHHHHhc-ChHHHHHHHHHHHHHhcCcHHHHHHHh
Confidence 33444444 345677888888887776443 556667788888888888865 577889999999999988877677778
Q ss_pred cCCHHHHHHHHcCC-CHHHHHHHHHHHHHhccCch--hHHHHH-------------hcchHHHHHHhhcCC--CHHH---
Q 004761 527 AGAIEPLIHVLKSG-NGGAKENSAAALFSLSVLEE--YKAKIG-------------RSGAVKALVDLLGSG--TLRG--- 585 (732)
Q Consensus 527 ~g~l~~Lv~lL~~~-~~e~~~~Aa~~L~~Ls~~~~--~k~~i~-------------~~g~i~~Lv~lL~~~--~~~~--- 585 (732)
.|++..+..++... ++..|..||..+..|....- -|..|. +.|- +..|+++... +|+.
T Consensus 1852 hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFLP~~f~d~~RD~P-EAaVH~fE~T~EnPELiWn 1930 (2235)
T KOG1789|consen 1852 HGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFLPEIFADSLRDSP-EAAVHMFESTSENPELIWN 1930 (2235)
T ss_pred cCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhchHHHHHHHhcCH-HHHHHHHhccCCCcccccC
Confidence 89999988877655 47788888888877643221 111111 1111 2333333311 1110
Q ss_pred ---H----------------------------------------------------------------------------
Q 004761 586 ---R---------------------------------------------------------------------------- 586 (732)
Q Consensus 586 ---~---------------------------------------------------------------------------- 586 (732)
+
T Consensus 1931 ~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~le 2010 (2235)
T KOG1789|consen 1931 EVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECAVGGSINREFVVGPGFNLRHPKLFLTELLEKVLE 2010 (2235)
T ss_pred HhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcccchhhhHHHhhCCCCcccCHHHHHHHHHHHHHH
Confidence 0
Q ss_pred ------------HHHHHHHHHhccCc-hhHHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCChhhHHHHHHcCcH
Q 004761 587 ------------KDAATALFNLSIFH-ENKARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGEGRLAIAREGGI 652 (732)
Q Consensus 587 ------------~~Al~aL~nLs~~~-~n~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~~r~~i~~~~~I 652 (732)
..--.|+..|...+ .-..++-..|-+|.++..+ ..+..+-..|+.+|..|+.+.-+..+|....++
T Consensus 2011 lm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am~~~n~s~P~SaiRVlH~Lsen~~C~~AMA~l~~i 2090 (2235)
T KOG1789|consen 2011 LMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAMCLQNTSAPRSAIRVLHELSENQFCCDAMAQLPCI 2090 (2235)
T ss_pred HhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHHHhcCCcCcHHHHHHHHHHhhccHHHHHHhccccc
Confidence 00001111111111 1122333345555555554 223333356888999999988888999888777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhcC-ChHhHHHHHhCCCHHHHHHchhcC
Q 004761 653 PSLVEVVESGSQRGKENAASILLQLCLH-SPKFCTLVLQEGAVPPLVGLSQSG 704 (732)
Q Consensus 653 ~~Lv~lL~~~s~~~~e~A~~~L~~L~~~-~~~~~~~v~~~G~i~~L~~Ll~~g 704 (732)
..++..+... +.....|+.+|-.+... ..+.+...+..|.+|.|+.|+..-
T Consensus 2091 ~~~m~~mkK~-~~~~GLA~EalkR~~~r~~~eLVAQ~LK~gLvpyLL~LLd~~ 2142 (2235)
T KOG1789|consen 2091 DGIMKSMKKQ-PSLMGLAAEALKRLMKRNTGELVAQMLKCGLVPYLLQLLDSS 2142 (2235)
T ss_pred hhhHHHHHhc-chHHHHHHHHHHHHHHHhHHHHHHHHhccCcHHHHHHHhccc
Confidence 7788877542 23344788888888764 345666677899999999999753
|
|
| >KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.00024 Score=73.60 Aligned_cols=65 Identities=22% Similarity=0.437 Sum_probs=54.2
Q ss_pred CCCccccccCcccCCCceec-CCCcccchHHHHHHHhcCCCCCCCCCCCCCCC----CCcccHHHHHHHHH
Q 004761 236 IPPYFRCPLSLELMIDPVIV-ASGQTYERVFIQKWLDHGLNICPKTRQTLAHT----NLIPNYTVKAMIEN 301 (732)
Q Consensus 236 ~p~~f~Cpi~~~lm~dPV~~-~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~----~l~pn~~l~~~i~~ 301 (732)
+=+...|++|..+|-|+=++ -|=|||||+||-++|.. ..+||.|+..+..+ .+.+..+|+.++.+
T Consensus 12 ~n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~-~~~CP~C~i~ih~t~pl~ni~~DrtlqdiVyK 81 (331)
T KOG2660|consen 12 LNPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEE-SKYCPTCDIVIHKTHPLLNIRSDRTLQDIVYK 81 (331)
T ss_pred cccceehhhccceeecchhHHHHHHHHHHHHHHHHHHH-hccCCccceeccCccccccCCcchHHHHHHHH
Confidence 34577899999999999886 59999999999999998 58999999877654 46777788777754
|
|
| >PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0028 Score=59.90 Aligned_cols=96 Identities=17% Similarity=0.259 Sum_probs=81.2
Q ss_pred HHhhcccccccchHHHHHHHHHHHhhhhhHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhCCCcchhHHHhcch
Q 004761 18 HLVSCQTIKLKPIQKDYKTMAGALKLLKPLLDEVVDYKIPLDEVLNKECEELDMVVNEAREFMENWSPKMSKIFSVLHSE 97 (732)
Q Consensus 18 ~~i~~~~~~~~~~~k~~~~l~r~l~lL~~lleEl~~~~~~~~~~~~~~l~~L~~al~~ak~Ll~~c~~~~Sklyll~~~~ 97 (732)
..+.....+...+|..+.++...++.|.|+++||...+..++..-..-++.|...|++++.|++.|+.. +-|=++.-.
T Consensus 20 k~v~~~~~k~~~fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~L~~g~~LV~k~sk~--~r~n~~kk~ 97 (147)
T PF05659_consen 20 KAVIDASKKSLSFKSILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKELLEKGKELVEKCSKV--RRWNLYKKP 97 (147)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHhccc--cHHHHHhhH
Confidence 444455566667788999999999999999999988776666666888999999999999999999984 677788889
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 004761 98 PLMMKIQSSSLEICHILY 115 (732)
Q Consensus 98 ~i~~~f~~~~~~i~~~L~ 115 (732)
.+..+++++-.+|.+.++
T Consensus 98 ~y~~Ki~~le~~l~~f~~ 115 (147)
T PF05659_consen 98 RYARKIEELEESLRRFIQ 115 (147)
T ss_pred hHHHHHHHHHHHHHHHhc
Confidence 999999999998888875
|
Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif []. |
| >KOG0212 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.013 Score=65.05 Aligned_cols=270 Identities=16% Similarity=0.131 Sum_probs=173.6
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHhccChhhHH-HHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCchHHHHH-HcC
Q 004761 451 IEDLNSTSNEIQASAAAELRLLAKHNMENRM-IIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAMIA-EAG 528 (732)
Q Consensus 451 v~~L~s~~~~~~~~Al~~L~~La~~~~~~r~-~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k~~i~-~~g 528 (732)
+..+..+++...+.++..+-.+.++-..-+. .+.-.++||.|-.-++..++.++...+..|.-|-..+.- ..+- -..
T Consensus 130 L~klsaDsd~~V~~~aeLLdRLikdIVte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~-~m~~yl~~ 208 (675)
T KOG0212|consen 130 LCKLSADSDQNVRGGAELLDRLIKDIVTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDL-EMISYLPS 208 (675)
T ss_pred HHHHhcCCccccccHHHHHHHHHHHhccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcH-HHHhcchH
Confidence 3344444444455555555555443221111 222235666666666677888888888877766443322 2121 245
Q ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHHh-cchHHHHHHhhcCCCHHHHHHHHHHHHHhccCchhHHHHH
Q 004761 529 AIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGR-SGAVKALVDLLGSGTLRGRKDAATALFNLSIFHENKARII 607 (732)
Q Consensus 529 ~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~-~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~n~~~lv 607 (732)
.++.|..+|.+.+.+++..+-.+|.++...-.++..... ...++.++.-+.+.++..+..|+..|.....-.++..-..
T Consensus 209 ~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~ 288 (675)
T KOG0212|consen 209 LLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLY 288 (675)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhh
Confidence 788889999999999997777766665321112222212 2578888888899999999999999999888777766667
Q ss_pred hhchHHHHHHhc-CCCh-HHHHHHH---HHHHHHhCChhhHHHHHHcC-cHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Q 004761 608 QAGAVKHLVDLM-DPST-GMVDKAV---ALLANLSTVGEGRLAIAREG-GIPSLVEVVESGSQRGKENAASILLQLCLHS 681 (732)
Q Consensus 608 ~~G~V~~Ll~lL-~~~~-~l~e~al---~iL~nLa~~~~~r~~i~~~~-~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~ 681 (732)
-.|++..++..+ +... .+.+.+. ..|..++..+...+. ++.| .+..+.+.+.+...+++-.|..-+..|-++.
T Consensus 289 ~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~-id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~ 367 (675)
T KOG0212|consen 289 LSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEE-IDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKA 367 (675)
T ss_pred hhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccc-cchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhC
Confidence 788989999988 3322 3333332 345556666655544 4444 4788888898888888988887777777654
Q ss_pred hHhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHhhccc
Q 004761 682 PKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFRNQR 723 (732)
Q Consensus 682 ~~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~~~ 723 (732)
|. .-.+....+.+.|+.-+.+.++.+-..+..+|..+....
T Consensus 368 p~-ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~ 408 (675)
T KOG0212|consen 368 PG-QLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSS 408 (675)
T ss_pred cc-hhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCc
Confidence 43 223334567788888777777777777777777765543
|
|
| >PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0045 Score=63.20 Aligned_cols=181 Identities=20% Similarity=0.139 Sum_probs=112.4
Q ss_pred hcCCCHHHHHHHHHHHHHHhccC--hhhHHHHHhc--CCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCch-HHHHHHcC
Q 004761 454 LNSTSNEIQASAAAELRLLAKHN--MENRMIIGNC--GAIPPLLSLLYSEAQLTQEHAVTALLNLSINDEN-KAMIAEAG 528 (732)
Q Consensus 454 L~s~~~~~~~~Al~~L~~La~~~--~~~r~~i~~~--G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~-k~~i~~~g 528 (732)
-.+.+++.+..|+..|+.+...+ ......+.+. ..+..+...+.+....+...|+.++..++..-.. -... -..
T Consensus 16 ~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~-~~~ 94 (228)
T PF12348_consen 16 ESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPY-ADI 94 (228)
T ss_dssp HT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHH-HHH
T ss_pred CCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHH-HHH
Confidence 35678999999999999999876 2333333321 4556777777777788999999999988764222 2222 234
Q ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhccCch-hHHHHH
Q 004761 529 AIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFHE-NKARII 607 (732)
Q Consensus 529 ~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~-n~~~lv 607 (732)
.++.|+..+.++...++..|..+|..+...-.....+ .++.+...+.+.++.++..++..|..+..... +...+-
T Consensus 95 ~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~----~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~ 170 (228)
T PF12348_consen 95 LLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKI----LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQ 170 (228)
T ss_dssp HHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HH----HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG-
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHH----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhc
Confidence 6888999999888889999999998887643311111 14666677788899999999999988866443 111111
Q ss_pred h----hchHHHHHHhc-CCChHHHHHHHHHHHHHhCC
Q 004761 608 Q----AGAVKHLVDLM-DPSTGMVDKAVALLANLSTV 639 (732)
Q Consensus 608 ~----~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~ 639 (732)
. ..+++.+...+ +.++.+++.|-.++..+..+
T Consensus 171 ~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~ 207 (228)
T PF12348_consen 171 KSAFLKQLVKALVKLLSDADPEVREAARECLWALYSH 207 (228)
T ss_dssp -HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence 1 34677777777 88999999998888888543
|
The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A. |
| >KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.13 Score=60.96 Aligned_cols=135 Identities=15% Similarity=0.179 Sum_probs=98.6
Q ss_pred HHHHHHHHHhccCch-hHH----HHHhhchHHHHHHhc--CCChHHHHHHHHHHHHHhCChhhHHHHHHcCcHHHHHHHH
Q 004761 587 KDAATALFNLSIFHE-NKA----RIIQAGAVKHLVDLM--DPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVV 659 (732)
Q Consensus 587 ~~Al~aL~nLs~~~~-n~~----~lv~~G~V~~Ll~lL--~~~~~l~e~al~iL~nLa~~~~~r~~i~~~~~I~~Lv~lL 659 (732)
..++.||.|+....+ -.. ...--|..+.+..+| ..++.+...|+.++..+....++...+...+.+..|+.+|
T Consensus 1743 ~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~LL~lL 1822 (2235)
T KOG1789|consen 1743 LMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLATCNVLTTLLTLL 1822 (2235)
T ss_pred HHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHhhhHHHHHHHHH
Confidence 456667777655332 111 111235556666666 4566678888888888888888888898888888999998
Q ss_pred hcCCHHHHHHHHHHHHHHhcCChHhHHHHHhCCCHHHHHHchhc-CChHHHHHHHHHHHHhhccc
Q 004761 660 ESGSQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQS-GTPRAKEKAQQLLSHFRNQR 723 (732)
Q Consensus 660 ~~~s~~~~e~A~~~L~~L~~~~~~~~~~v~~~G~i~~L~~Ll~~-g~~~~k~kA~~lL~~l~~~~ 723 (732)
++ -|..++.++.+|+.|++ +++...++.+.|++.-+..++-. .++..+..|+++|.-|....
T Consensus 1823 HS-~PS~R~~vL~vLYAL~S-~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adk 1885 (2235)
T KOG1789|consen 1823 HS-QPSMRARVLDVLYALSS-NGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADK 1885 (2235)
T ss_pred hc-ChHHHHHHHHHHHHHhc-CcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhcc
Confidence 75 57789999999999999 67888888888887776665554 45788888899988776543
|
|
| >PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0031 Score=53.80 Aligned_cols=86 Identities=35% Similarity=0.389 Sum_probs=69.1
Q ss_pred HHHHHHhh-ccCCHHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHHh
Q 004761 489 IPPLLSLL-YSEAQLTQEHAVTALLNLSINDENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGR 567 (732)
Q Consensus 489 I~~Lv~lL-~s~~~~v~~~A~~~L~nLs~~~~~k~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~ 567 (732)
|+.|+..| +++++.++..|+.+|.++. ....++.|+.+++++++.++..|+.+|..+ +.
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i----------~~ 60 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG----------DPEAIPALIELLKDEDPMVRRAAARALGRI----------GD 60 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT----------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCC----------HH
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHh----------CC
Confidence 67899988 7889999999999998442 224589999999999999999999999876 33
Q ss_pred cchHHHHHHhhcCCC-HHHHHHHHHHHH
Q 004761 568 SGAVKALVDLLGSGT-LRGRKDAATALF 594 (732)
Q Consensus 568 ~g~i~~Lv~lL~~~~-~~~~~~Al~aL~ 594 (732)
..+++.|.+++.+++ ..++..|+.+|.
T Consensus 61 ~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 61 PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 458899999998754 556788887763
|
|
| >KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.059 Score=60.91 Aligned_cols=262 Identities=17% Similarity=0.140 Sum_probs=162.1
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHH-HHHHHHHhhcCCchHHHH
Q 004761 446 YVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEH-AVTALLNLSINDENKAMI 524 (732)
Q Consensus 446 ~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~-A~~~L~nLs~~~~~k~~i 524 (732)
..+.+.+.+.......+..|.+.+..+.+... -..+.+.+++..|-............. +.-+....+..-. ..
T Consensus 135 ~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~--i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg---~~ 209 (569)
T KOG1242|consen 135 VLELLLELLTSTKIAERAGAAYGLAGLVNGLG--IESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLG---PP 209 (569)
T ss_pred HHHHHHHHhccccHHHHhhhhHHHHHHHcCcH--HhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcC---CC
Confidence 45677788888888889999999999987643 445566788888888887654333222 2222211111100 11
Q ss_pred HHcCCHHHHHHHH---cCCCHHHHHHHHHHHHHhcc-CchhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhccCc
Q 004761 525 AEAGAIEPLIHVL---KSGNGGAKENSAAALFSLSV-LEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFH 600 (732)
Q Consensus 525 ~~~g~l~~Lv~lL---~~~~~e~~~~Aa~~L~~Ls~-~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~ 600 (732)
.+...++.+-.+| .+...++|..|..+...+-. ...+.. .-.+|.++.-+.....+.+..++..|..++...
T Consensus 210 ~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aV----K~llpsll~~l~~~kWrtK~aslellg~m~~~a 285 (569)
T KOG1242|consen 210 FEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAV----KLLLPSLLGSLLEAKWRTKMASLELLGAMADCA 285 (569)
T ss_pred CCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchh----hHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhc
Confidence 1233333333333 34445666655555443321 111111 123455554444446788999999999998888
Q ss_pred hhHHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCChhh-----------------------------HHHHH---
Q 004761 601 ENKARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGEG-----------------------------RLAIA--- 647 (732)
Q Consensus 601 ~n~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~~-----------------------------r~~i~--- 647 (732)
+-.-...-..+||.+.+.| +..+.+++.+-.+|..+++.-++ +..++
T Consensus 286 p~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V 365 (569)
T KOG1242|consen 286 PKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDALADPSCYTPECLDSLGATTFVAEV 365 (569)
T ss_pred hHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhcCcccchHHHHHhhcceeeeeee
Confidence 7777788889999999999 88888888888887777653211 11111
Q ss_pred HcCcHHHHHHHHhc----CCHHHHHHHHHHHHHHhcC--ChHhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHH
Q 004761 648 REGGIPSLVEVVES----GSQRGKENAASILLQLCLH--SPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLS 717 (732)
Q Consensus 648 ~~~~I~~Lv~lL~~----~s~~~~e~A~~~L~~L~~~--~~~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~ 717 (732)
++..+..++.++++ .+...+..++.+..|+|.- ++......+.. ++|.|-..+..-.|.+|.-|..+|.
T Consensus 366 ~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~-Llp~lk~~~~d~~PEvR~vaarAL~ 440 (569)
T KOG1242|consen 366 DAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPS-LLPGLKENLDDAVPEVRAVAARALG 440 (569)
T ss_pred cchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHH-HhhHHHHHhcCCChhHHHHHHHHHH
Confidence 22345556666644 3556678899999999994 44444433332 5777777777767899988888883
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.065 Score=63.51 Aligned_cols=242 Identities=17% Similarity=0.108 Sum_probs=166.2
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHH-hhcCCchHHHH
Q 004761 446 YVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLN-LSINDENKAMI 524 (732)
Q Consensus 446 ~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~n-Ls~~~~~k~~i 524 (732)
+++..++-|-+. --+..|+..|..+..-.+=.-..-..-|..|..+++|.++..+++..-+-+=.. |+.|+..+..+
T Consensus 473 QLPiVLQVLLSQ--vHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dL 550 (1387)
T KOG1517|consen 473 QLPIVLQVLLSQ--VHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADL 550 (1387)
T ss_pred hcchHHHHHHHH--HHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHH
Confidence 344445544331 224556666655543332222222345999999999999888776655544444 57787788888
Q ss_pred HHcCCHHHHHHHHcCC---CHHHHHHHHHHHHHhccC-chhHHHHHhcchHHHHHHhhcCC-CHHHHHHHHHHHHHhcc-
Q 004761 525 AEAGAIEPLIHVLKSG---NGGAKENSAAALFSLSVL-EEYKAKIGRSGAVKALVDLLGSG-TLRGRKDAATALFNLSI- 598 (732)
Q Consensus 525 ~~~g~l~~Lv~lL~~~---~~e~~~~Aa~~L~~Ls~~-~~~k~~i~~~g~i~~Lv~lL~~~-~~~~~~~Al~aL~nLs~- 598 (732)
+..++-..++.+|..+ ++|-|..||-+|..+..+ .-.+......+.|...+..|.++ .+-.+.-.+-+|..|-.
T Consensus 551 vKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d 630 (1387)
T KOG1517|consen 551 VKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWED 630 (1387)
T ss_pred HhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhh
Confidence 8888888888888773 358888899888888763 33455555668888888888875 46667778888888865
Q ss_pred CchhHHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCC-----hhhHHHH---H--------HcCcH----HHHHH
Q 004761 599 FHENKARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTV-----GEGRLAI---A--------REGGI----PSLVE 657 (732)
Q Consensus 599 ~~~n~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~-----~~~r~~i---~--------~~~~I----~~Lv~ 657 (732)
+..+|..-++.++...|+.+| ++-++++-.|+.+|..+.+. ++....+ + -.+.+ ..++.
T Consensus 631 ~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~ 710 (1387)
T KOG1517|consen 631 YDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLA 710 (1387)
T ss_pred cchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHH
Confidence 567888888899999999999 78888999999999988763 2222111 1 11222 36677
Q ss_pred HHhcCCHHHHHHHHHHHHHHhcCChHhHHHHH
Q 004761 658 VVESGSQRGKENAASILLQLCLHSPKFCTLVL 689 (732)
Q Consensus 658 lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~v~ 689 (732)
++..+++-++...+.+|..+..+...+...+.
T Consensus 711 ~vsdgsplvr~ev~v~ls~~~~g~~~~~~~va 742 (1387)
T KOG1517|consen 711 LVSDGSPLVRTEVVVALSHFVVGYVSHLKVVA 742 (1387)
T ss_pred HHhccchHHHHHHHHHHHHHHHhhHHHhHHHh
Confidence 77889999888888888888876555444433
|
|
| >PF11841 DUF3361: Domain of unknown function (DUF3361) | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.033 Score=52.96 Aligned_cols=120 Identities=14% Similarity=0.186 Sum_probs=98.3
Q ss_pred HHHhcchHHHHHHhhcCCC------HHHHHHHHHHHHHhccCchhHHHHHhhchHHHHHHhc---CCChHHHHHHHHHHH
Q 004761 564 KIGRSGAVKALVDLLGSGT------LRGRKDAATALFNLSIFHENKARIIQAGAVKHLVDLM---DPSTGMVDKAVALLA 634 (732)
Q Consensus 564 ~i~~~g~i~~Lv~lL~~~~------~~~~~~Al~aL~nLs~~~~n~~~lv~~G~V~~Ll~lL---~~~~~l~e~al~iL~ 634 (732)
.+...+++..|++++.++. ......++.|+..|-.++-.-...+....|..++.++ ..+..+...|+++|.
T Consensus 6 EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaILE 85 (160)
T PF11841_consen 6 EFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAILE 85 (160)
T ss_pred HHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHHH
Confidence 3455688999999999876 3667778999999888766566788888899999998 236889999999999
Q ss_pred HHhCChhhHHHHHHcC-cHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChH
Q 004761 635 NLSTVGEGRLAIAREG-GIPSLVEVVESGSQRGKENAASILLQLCLHSPK 683 (732)
Q Consensus 635 nLa~~~~~r~~i~~~~-~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~ 683 (732)
+++..+......+... .++.|+.+|+..++..+.+|++.+-+|..+.++
T Consensus 86 s~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~ 135 (160)
T PF11841_consen 86 SIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADD 135 (160)
T ss_pred HHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCh
Confidence 9998877755555444 599999999999999999999999999886544
|
|
| >COG1413 FOG: HEAT repeat [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.14 Score=55.41 Aligned_cols=183 Identities=26% Similarity=0.288 Sum_probs=125.6
Q ss_pred chHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCchHHHH
Q 004761 445 PYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAMI 524 (732)
Q Consensus 445 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k~~i 524 (732)
..+..+++.+.+.+..++..|...+..+.. .-+++.|..++.+.++.++..|+.+|.++-
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~-----------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~--------- 102 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELGS-----------EEAVPLLRELLSDEDPRVRDAAADALGELG--------- 102 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhch-----------HHHHHHHHHHhcCCCHHHHHHHHHHHHccC---------
Confidence 457889999999888888888877555432 247889999999999999999999886653
Q ss_pred HHcCCHHHHHHHHc-CCCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCCCHHH------------HHHHHH
Q 004761 525 AEAGAIEPLIHVLK-SGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRG------------RKDAAT 591 (732)
Q Consensus 525 ~~~g~l~~Lv~lL~-~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~------------~~~Al~ 591 (732)
....+++|+..|. +++..+|..++.+|..+-. ..++.+++..+.+..... +..++.
T Consensus 103 -~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~----------~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~ 171 (335)
T COG1413 103 -DPEAVPPLVELLENDENEGVRAAAARALGKLGD----------ERALDPLLEALQDEDSGSAAAALDAALLDVRAAAAE 171 (335)
T ss_pred -ChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCc----------hhhhHHHHHHhccchhhhhhhhccchHHHHHHHHHH
Confidence 2346888999998 5888999999999987643 234788888888765322 222222
Q ss_pred HHHHhccCchhHHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCChhhHHHHHHcCcHHHHHHHHhcCCHHHHHHH
Q 004761 592 ALFNLSIFHENKARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVESGSQRGKENA 670 (732)
Q Consensus 592 aL~nLs~~~~n~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~~r~~i~~~~~I~~Lv~lL~~~s~~~~e~A 670 (732)
+|.. +.....++.+.+++ +....+...+...|..+.... ......+...+...+...+..+
T Consensus 172 ~l~~----------~~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~--------~~~~~~l~~~~~~~~~~vr~~~ 233 (335)
T COG1413 172 ALGE----------LGDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN--------VEAADLLVKALSDESLEVRKAA 233 (335)
T ss_pred HHHH----------cCChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch--------hhHHHHHHHHhcCCCHHHHHHH
Confidence 2222 12234667777777 666677888888888776654 1234555555666666665555
Q ss_pred HHHHHH
Q 004761 671 ASILLQ 676 (732)
Q Consensus 671 ~~~L~~ 676 (732)
+..|..
T Consensus 234 ~~~l~~ 239 (335)
T COG1413 234 LLALGE 239 (335)
T ss_pred HHHhcc
Confidence 554443
|
|
| >PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0072 Score=51.45 Aligned_cols=85 Identities=27% Similarity=0.351 Sum_probs=67.4
Q ss_pred HHHHHHHH-cCCCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhccCchhHHHHHh
Q 004761 530 IEPLIHVL-KSGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFHENKARIIQ 608 (732)
Q Consensus 530 l~~Lv~lL-~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~n~~~lv~ 608 (732)
++.|++.| +++++.+|..++.+|..+- ...+++.|+.++++.++.++..|+.+|..+- .
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~----------~ 60 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG----------DPEAIPALIELLKDEDPMVRRAAARALGRIG----------D 60 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT----------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------H
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------C
Confidence 57889988 7788999999999998442 2256899999999999999999999998772 3
Q ss_pred hchHHHHHHhc-C-CChHHHHHHHHHHH
Q 004761 609 AGAVKHLVDLM-D-PSTGMVDKAVALLA 634 (732)
Q Consensus 609 ~G~V~~Ll~lL-~-~~~~l~e~al~iL~ 634 (732)
..+++.|.+++ + .+..+...|+..|+
T Consensus 61 ~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 61 PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 45888999988 4 34555777777664
|
|
| >KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.15 Score=53.22 Aligned_cols=244 Identities=12% Similarity=0.135 Sum_probs=162.2
Q ss_pred CCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcc-CCHHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHH
Q 004761 456 STSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYS-EAQLTQEHAVTALLNLSINDENKAMIAEAGAIEPLI 534 (732)
Q Consensus 456 s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s-~~~~v~~~A~~~L~nLs~~~~~k~~i~~~g~l~~Lv 534 (732)
..+.-.+...+..|..+.+.+++.-......|.+..|..-|+. .|.-+..+++.....|+.....++.+.+.|.++.+.
T Consensus 182 kcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLaeteHgreflaQeglIdlic 261 (524)
T KOG4413|consen 182 KCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEHGREFLAQEGLIDLIC 261 (524)
T ss_pred hhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhhhhhcchhhHHHHHH
Confidence 3445567778888888888888877777788999988887775 677788888999999998888999999999999999
Q ss_pred HHHcCCC--HHHHHHHHHH----HHHhccCchhHHHHHhc--chHHHHHHhhcCCCHHHHHHHHHHHHHhccCchhHHHH
Q 004761 535 HVLKSGN--GGAKENSAAA----LFSLSVLEEYKAKIGRS--GAVKALVDLLGSGTLRGRKDAATALFNLSIFHENKARI 606 (732)
Q Consensus 535 ~lL~~~~--~e~~~~Aa~~----L~~Ls~~~~~k~~i~~~--g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~n~~~l 606 (732)
.++...+ +-.+..++.. +.+.+..+-.-..+.+. -+|...++++...++.....|+-++..|-++.+.+..+
T Consensus 262 nIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteGadll 341 (524)
T KOG4413|consen 262 NIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGADLL 341 (524)
T ss_pred HHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchhHHH
Confidence 9886432 2222223322 22333322222333322 46677788888889999999999999999998888877
Q ss_pred Hhhch--HHH-HHHhcC-CChHHHHHHHHHHHHHhCC--------hhhHH------HHHH-------cCcHHHHHHHHhc
Q 004761 607 IQAGA--VKH-LVDLMD-PSTGMVDKAVALLANLSTV--------GEGRL------AIAR-------EGGIPSLVEVVES 661 (732)
Q Consensus 607 v~~G~--V~~-Ll~lL~-~~~~l~e~al~iL~nLa~~--------~~~r~------~i~~-------~~~I~~Lv~lL~~ 661 (732)
.+.|- ... +....+ ....-++.++.+|.++++. .+|+. .+.+ -.-...+..+++-
T Consensus 342 lkTgppaaehllarafdqnahakqeaaihaLaaIagelrlkpeqitDgkaeerlrclifdaaaqstkldPleLFlgilqQ 421 (524)
T KOG4413|consen 342 LKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCLIFDAAAQSTKLDPLELFLGILQQ 421 (524)
T ss_pred hccCChHHHHHHHHHhcccccchHHHHHHHHHHhhccccCChhhccccHHHHHHHHHHHHHHhhccCCChHHHHHHHHcC
Confidence 77663 333 333332 2333467778888888752 12221 1111 1224556667777
Q ss_pred CCHHHHHHHHHHHHHHhcCChHhHHHH-HhCCCHHHHHHc
Q 004761 662 GSQRGKENAASILLQLCLHSPKFCTLV-LQEGAVPPLVGL 700 (732)
Q Consensus 662 ~s~~~~e~A~~~L~~L~~~~~~~~~~v-~~~G~i~~L~~L 700 (732)
+.++.+-.+..++..+... |=....+ ..+|.+.....-
T Consensus 422 pfpEihcAalktfTAiaaq-PWalkeifakeefieiVtDa 460 (524)
T KOG4413|consen 422 PFPEIHCAALKTFTAIAAQ-PWALKEIFAKEEFIEIVTDA 460 (524)
T ss_pred CChhhHHHHHHHHHHHHcC-cHHHHHHhcCccceeeeccc
Confidence 7888888888888887773 3223333 346666554443
|
|
| >smart00185 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0035 Score=45.06 Aligned_cols=38 Identities=37% Similarity=0.485 Sum_probs=35.6
Q ss_pred hhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhh
Q 004761 478 ENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLS 515 (732)
Q Consensus 478 ~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs 515 (732)
+++..+.+.|+++.|+.+|.+++..++..|+++|.||+
T Consensus 3 ~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 3 EQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 47888999999999999999999999999999999987
|
Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. |
| >COG5369 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.02 Score=63.14 Aligned_cols=196 Identities=14% Similarity=0.111 Sum_probs=142.7
Q ss_pred HHHHHHHHhhcCC-chHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhcc-CchhHHHHHhcchHHHHHHhhcCCCH
Q 004761 506 HAVTALLNLSIND-ENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSV-LEEYKAKIGRSGAVKALVDLLGSGTL 583 (732)
Q Consensus 506 ~A~~~L~nLs~~~-~~k~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~-~~~~k~~i~~~g~i~~Lv~lL~~~~~ 583 (732)
.++..|..++... --|..+.+....++|+++|.++..-+.--+...++|+-. ...-+..+.+.|.|..|+.++.+.+.
T Consensus 408 a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDd 487 (743)
T COG5369 408 AIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDD 487 (743)
T ss_pred HHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchh
Confidence 3444555555543 347788889999999999998665566667778888765 44557778888999999999998888
Q ss_pred HHHHHHHHHHHHhccCchh--HHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCCh-h---hHHHHHHcC----cH
Q 004761 584 RGRKDAATALFNLSIFHEN--KARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVG-E---GRLAIAREG----GI 652 (732)
Q Consensus 584 ~~~~~Al~aL~nLs~~~~n--~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~-~---~r~~i~~~~----~I 652 (732)
..+....+.+.++-.+.++ +-+++..-++..++++. ++.-.++..++.+|.|+.... . .+.-..... ..
T Consensus 488 aLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylf 567 (743)
T COG5369 488 ALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLF 567 (743)
T ss_pred hhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHH
Confidence 8899999999999886543 45778888889999999 888899999999999985422 1 222222221 24
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhcCChHhHHHHHh-CCCHHHHHHch
Q 004761 653 PSLVEVVESGSQRGKENAASILLQLCLHSPKFCTLVLQ-EGAVPPLVGLS 701 (732)
Q Consensus 653 ~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~v~~-~G~i~~L~~Ll 701 (732)
..|++.++..+|-..+..+.+|.+++.-++.....+.+ ...+..+..++
T Consensus 568 k~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil 617 (743)
T COG5369 568 KRLIDKYEENNPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEIL 617 (743)
T ss_pred HHHHHHHHhcCchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHH
Confidence 55666777778888888899999998866665555554 34444444444
|
|
| >PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.0019 Score=54.24 Aligned_cols=49 Identities=27% Similarity=0.375 Sum_probs=37.6
Q ss_pred CCccccccCcccCCC-ceec-CCCcccchHHHHHHHhc--CCCCCCCCCCCCC
Q 004761 237 PPYFRCPLSLELMID-PVIV-ASGQTYERVFIQKWLDH--GLNICPKTRQTLA 285 (732)
Q Consensus 237 p~~f~Cpi~~~lm~d-PV~~-~~g~ty~r~~I~~~~~~--~~~~cP~~~~~l~ 285 (732)
|-+-.||.|...=.| |++. .|||.|-..||.+|++. +..+||.||++..
T Consensus 30 ~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 30 PFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred ccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence 334456666666555 7665 69999999999999985 4578999999864
|
|
| >KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.001 Score=67.88 Aligned_cols=60 Identities=18% Similarity=0.306 Sum_probs=48.7
Q ss_pred ccccccCcccCCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHH
Q 004761 239 YFRCPLSLELMIDPVIVASGQTYERVFIQKWLDHGLNICPKTRQTLAHTNLIPNYTVKAMIE 300 (732)
Q Consensus 239 ~f~Cpi~~~lm~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn~~l~~~i~ 300 (732)
.|-|-||.+-+.+||++.|||+||..|-.+.++.+ ..|++|++.. +-.+-+...|.....
T Consensus 241 Pf~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk~-~~c~vC~~~t-~g~~~~akeL~~~L~ 300 (313)
T KOG1813|consen 241 PFKCFICRKYFYRPVVTKCGHYFCEVCALKPYQKG-EKCYVCSQQT-HGSFNVAKELLVSLK 300 (313)
T ss_pred CccccccccccccchhhcCCceeehhhhccccccC-Ccceeccccc-ccccchHHHHHHHHH
Confidence 48899999999999999999999999999999887 7899999875 344555555544443
|
|
| >KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.0011 Score=67.73 Aligned_cols=47 Identities=15% Similarity=0.192 Sum_probs=43.2
Q ss_pred ccccCcccCCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCC
Q 004761 241 RCPLSLELMIDPVIVASGQTYERVFIQKWLDHGLNICPKTRQTLAHT 287 (732)
Q Consensus 241 ~Cpi~~~lm~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~ 287 (732)
.||||+.-|--||.++|+|.||--||+--...+..+||+|+++++++
T Consensus 9 eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~ 55 (324)
T KOG0824|consen 9 ECLICYNTGNCPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDST 55 (324)
T ss_pred cceeeeccCCcCccccccchhhhhhhcchhhcCCCCCceecCCCCcc
Confidence 59999999999999999999999999987777777999999999875
|
|
| >KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.18 Score=57.84 Aligned_cols=251 Identities=18% Similarity=0.212 Sum_probs=152.3
Q ss_pred CchHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhc-cCCHHHHHHHHHHHHHhhcCC-chH
Q 004761 444 TPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLY-SEAQLTQEHAVTALLNLSIND-ENK 521 (732)
Q Consensus 444 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~-s~~~~v~~~A~~~L~nLs~~~-~~k 521 (732)
...++.|++.|..+++.++-.|+..|+.||+.+|.|-- ..-|.+..+|. ++|--+....+....+|+--+ ...
T Consensus 180 r~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL-----~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLg 254 (877)
T KOG1059|consen 180 RPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYL-----QLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLG 254 (877)
T ss_pred hhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccc-----cccHHHHHHHhccCCCeehHHHHHHHhhccccCchhh
Confidence 44578999999999999999999999999999886632 34567777774 445556667777777776543 222
Q ss_pred HHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHH--hccC-chhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 004761 522 AMIAEAGAIEPLIHVLKSGN-GGAKENSAAALFS--LSVL-EEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLS 597 (732)
Q Consensus 522 ~~i~~~g~l~~Lv~lL~~~~-~e~~~~Aa~~L~~--Ls~~-~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs 597 (732)
. ..+++|..++++.. +.....+..++.. ++.- .++-..+. -++..|-.++.+.++..+..++.|+..+.
T Consensus 255 K-----KLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asiq--LCvqKLr~fiedsDqNLKYlgLlam~KI~ 327 (877)
T KOG1059|consen 255 K-----KLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASIQ--LCVQKLRIFIEDSDQNLKYLGLLAMSKIL 327 (877)
T ss_pred h-----hhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHHH--HHHHHHhhhhhcCCccHHHHHHHHHHHHh
Confidence 2 35888999887654 3333344433322 2221 11111111 24566777788889999999999999988
Q ss_pred cCchhHHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCChhhHHHHHHcCcHHHHHHHHhcCC-HHHHHHHHHHHH
Q 004761 598 IFHENKARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVESGS-QRGKENAASILL 675 (732)
Q Consensus 598 ~~~~n~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~~r~~i~~~~~I~~Lv~lL~~~s-~~~~e~A~~~L~ 675 (732)
..+.-. |.+ --..++..| +.+..++-.|+.+|.-++.... -.+| +..|+..+...+ ..-+..-+..+.
T Consensus 328 ktHp~~---Vqa-~kdlIlrcL~DkD~SIRlrALdLl~gmVskkN-l~eI-----Vk~LM~~~~~ae~t~yrdell~~II 397 (877)
T KOG1059|consen 328 KTHPKA---VQA-HKDLILRCLDDKDESIRLRALDLLYGMVSKKN-LMEI-----VKTLMKHVEKAEGTNYRDELLTRII 397 (877)
T ss_pred hhCHHH---HHH-hHHHHHHHhccCCchhHHHHHHHHHHHhhhhh-HHHH-----HHHHHHHHHhccchhHHHHHHHHHH
Confidence 765421 211 113456667 7889999999999998876432 2222 344444443322 245556666667
Q ss_pred HHhcCChHhHHHHHhC-CCHHHHHHchhc-CChHHHHHHHHHHHH
Q 004761 676 QLCLHSPKFCTLVLQE-GAVPPLVGLSQS-GTPRAKEKAQQLLSH 718 (732)
Q Consensus 676 ~L~~~~~~~~~~v~~~-G~i~~L~~Ll~~-g~~~~k~kA~~lL~~ 718 (732)
.+|+.+.. ..+.+. =.+..|+.|.+- |+..+..-|..++-.
T Consensus 398 ~iCS~snY--~~ItdFEWYlsVlveLa~l~~~~~G~~I~eQi~Dv 440 (877)
T KOG1059|consen 398 SICSQSNY--QYITDFEWYLSVLVELARLEGTRHGSLIAEQIIDV 440 (877)
T ss_pred HHhhhhhh--hhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHH
Confidence 77774322 233332 234555555543 344444444444433
|
|
| >KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.19 Score=58.03 Aligned_cols=273 Identities=11% Similarity=0.077 Sum_probs=170.9
Q ss_pred cccCchHHHHHHHhcCCCHH-HHHHHHHHHHHHhccChhhHHHHHhc-CCHHHHHHhhcc--CCHHHHHHHHHHHHHhh-
Q 004761 441 VTTTPYVKKLIEDLNSTSNE-IQASAAAELRLLAKHNMENRMIIGNC-GAIPPLLSLLYS--EAQLTQEHAVTALLNLS- 515 (732)
Q Consensus 441 ~~~~~~i~~Lv~~L~s~~~~-~~~~Al~~L~~La~~~~~~r~~i~~~-G~I~~Lv~lL~s--~~~~v~~~A~~~L~nLs- 515 (732)
..|.+.+..|+.......+. .+..++..|..++.+-. -....... ..+..++.-.+. ++..++-.|+.+|.|--
T Consensus 125 n~wp~li~~lv~nv~~~~~~~~k~~slealGyice~i~-pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLe 203 (859)
T KOG1241|consen 125 NQWPELIVTLVSNVGEEQASMVKESSLEALGYICEDID-PEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLE 203 (859)
T ss_pred hhCHHHHHHHHHhcccccchHHHHHHHHHHHHHHccCC-HHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHH
Confidence 35677888888888766554 77888999999986532 22333332 455556655543 46788999999998742
Q ss_pred cC------CchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhcc-CchhHHHHHhcchHHHHHHhhcCCCHHHHHH
Q 004761 516 IN------DENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSV-LEEYKAKIGRSGAVKALVDLLGSGTLRGRKD 588 (732)
Q Consensus 516 ~~------~~~k~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~-~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~ 588 (732)
.. +.+|..| +...++.-..++.+++..|..+|..+.. +-+.-...+....+..-+.-+++.++++...
T Consensus 204 f~~~nF~~E~ern~i-----MqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQ 278 (859)
T KOG1241|consen 204 FTKANFNNEMERNYI-----MQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQ 278 (859)
T ss_pred HHHHhhccHhhhcee-----eeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHH
Confidence 21 1223322 2333344456678888888888887754 2233333333345555666778888888888
Q ss_pred HHHHHHHhccCc-h----------------hHHHHH--hhchHHHHHHhc-C--C-----ChHHHHHHHHHHHHHhCChh
Q 004761 589 AATALFNLSIFH-E----------------NKARII--QAGAVKHLVDLM-D--P-----STGMVDKAVALLANLSTVGE 641 (732)
Q Consensus 589 Al~aL~nLs~~~-~----------------n~~~lv--~~G~V~~Ll~lL-~--~-----~~~l~e~al~iL~nLa~~~~ 641 (732)
|+....++|... + +..... -.+++|.|+++| . + +-+....|-.+|..++.+-
T Consensus 279 aiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~- 357 (859)
T KOG1241|consen 279 AIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCV- 357 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHh-
Confidence 887777776521 0 111111 137889999999 2 1 1223444444454444321
Q ss_pred hHHHHHHcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHhhc
Q 004761 642 GRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFRN 721 (732)
Q Consensus 642 ~r~~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~ 721 (732)
+..|+. ..++.+-+-+++++-+.++.|+.++..+-.+....+..-+..+++|.++.++...+--+|+-+++.|.-+.+
T Consensus 358 -~D~Iv~-~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d 435 (859)
T KOG1241|consen 358 -GDDIVP-HVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIAD 435 (859)
T ss_pred -cccchh-hhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHh
Confidence 222333 344555556778888899999999988888644555555667889999999997677788888888776654
Q ss_pred c
Q 004761 722 Q 722 (732)
Q Consensus 722 ~ 722 (732)
.
T Consensus 436 ~ 436 (859)
T KOG1241|consen 436 F 436 (859)
T ss_pred h
Confidence 3
|
|
| >KOG2979 consensus Protein involved in DNA repair [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.0027 Score=63.79 Aligned_cols=64 Identities=23% Similarity=0.305 Sum_probs=46.9
Q ss_pred CccccccCcccCCCceec-CCCcccchHHHHHHHhcC-CCCCCCCCCC----CCCCCCcccHHHHHHHHH
Q 004761 238 PYFRCPLSLELMIDPVIV-ASGQTYERVFIQKWLDHG-LNICPKTRQT----LAHTNLIPNYTVKAMIEN 301 (732)
Q Consensus 238 ~~f~Cpi~~~lm~dPV~~-~~g~ty~r~~I~~~~~~~-~~~cP~~~~~----l~~~~l~pn~~l~~~i~~ 301 (732)
-+++|||+......||+- .|||.|||..|+..+... ...||+-|.. +....+.+...++.-|++
T Consensus 175 fs~rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~~~~i~CPv~gC~~~~~~~~~~l~~d~el~~kIr~ 244 (262)
T KOG2979|consen 175 FSNRDPISKKPIVNPVISKKCGHVYDRDSIMQILCDEITIRCPVLGCENPYYIQPGHLDEDKELQQKIRQ 244 (262)
T ss_pred hcccCchhhhhhhchhhhcCcCcchhhhhHHHHhccCceeecccccCCccccccccccCchHHHHHHHHH
Confidence 368999999999999984 799999999999999752 3569987765 122344554455555543
|
|
| >PF04641 Rtf2: Rtf2 RING-finger | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.0025 Score=66.52 Aligned_cols=54 Identities=15% Similarity=0.349 Sum_probs=43.7
Q ss_pred CCCccccccCcccCCC--cee--cCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCcc
Q 004761 236 IPPYFRCPLSLELMID--PVI--VASGQTYERVFIQKWLDHGLNICPKTRQTLAHTNLIP 291 (732)
Q Consensus 236 ~p~~f~Cpi~~~lm~d--PV~--~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~p 291 (732)
-...|.||||+..|.. +.+ .+|||+|...+|++-- ....||+|++++...+++|
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k--~~~~Cp~c~~~f~~~DiI~ 167 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK--KSKKCPVCGKPFTEEDIIP 167 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc--ccccccccCCccccCCEEE
Confidence 3578999999999954 332 4899999999999883 2357999999999887664
|
|
| >TIGR02270 conserved hypothetical protein | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.31 Score=54.28 Aligned_cols=150 Identities=21% Similarity=0.049 Sum_probs=93.7
Q ss_pred chHHHHHHHhc-CCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCchHHH
Q 004761 445 PYVKKLIEDLN-STSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAM 523 (732)
Q Consensus 445 ~~i~~Lv~~L~-s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k~~ 523 (732)
..++.++..|. ..+.++...++..+ .....+ .++..|+..|.+.++.++..+..+|..+-
T Consensus 54 ~a~~~L~~aL~~d~~~ev~~~aa~al--~~~~~~---------~~~~~L~~~L~d~~~~vr~aaa~ALg~i~-------- 114 (410)
T TIGR02270 54 AATELLVSALAEADEPGRVACAALAL--LAQEDA---------LDLRSVLAVLQAGPEGLCAGIQAALGWLG-------- 114 (410)
T ss_pred hHHHHHHHHHhhCCChhHHHHHHHHH--hccCCh---------HHHHHHHHHhcCCCHHHHHHHHHHHhcCC--------
Confidence 34566777774 34444444333322 111111 13677888888777778888877775432
Q ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhccCchhH
Q 004761 524 IAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFHENK 603 (732)
Q Consensus 524 i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~n~ 603 (732)
..+..+.|+.+|++.++.++..++.++... .....+.+..+|++.++.++..|+.+|..|-.
T Consensus 115 --~~~a~~~L~~~L~~~~p~vR~aal~al~~r-----------~~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~----- 176 (410)
T TIGR02270 115 --GRQAEPWLEPLLAASEPPGRAIGLAALGAH-----------RHDPGPALEAALTHEDALVRAAALRALGELPR----- 176 (410)
T ss_pred --chHHHHHHHHHhcCCChHHHHHHHHHHHhh-----------ccChHHHHHHHhcCCCHHHHHHHHHHHHhhcc-----
Confidence 234567777788777777777666555431 11345677778888888888888888876532
Q ss_pred HHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHH
Q 004761 604 ARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANL 636 (732)
Q Consensus 604 ~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nL 636 (732)
...++.|...+ +.+..+...|+..|..+
T Consensus 177 -----~~a~~~L~~al~d~~~~VR~aA~~al~~l 205 (410)
T TIGR02270 177 -----RLSESTLRLYLRDSDPEVRFAALEAGLLA 205 (410)
T ss_pred -----ccchHHHHHHHcCCCHHHHHHHHHHHHHc
Confidence 24555566666 67777777777777555
|
Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown. |
| >KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.0016 Score=70.88 Aligned_cols=54 Identities=17% Similarity=0.261 Sum_probs=45.6
Q ss_pred CccccccCcccCCCceecCCCcccchHHHHHHHhc----CCCCCCCCCCCCCCCCCcc
Q 004761 238 PYFRCPLSLELMIDPVIVASGQTYERVFIQKWLDH----GLNICPKTRQTLAHTNLIP 291 (732)
Q Consensus 238 ~~f~Cpi~~~lm~dPV~~~~g~ty~r~~I~~~~~~----~~~~cP~~~~~l~~~~l~p 291 (732)
.+..|-+|.+.-+||+..+|.|+|||-||.+|... .+-+||.|..+|+.+.-.|
T Consensus 535 ~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDlse~ 592 (791)
T KOG1002|consen 535 GEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDLSEP 592 (791)
T ss_pred CceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccccccccch
Confidence 46789999999999999999999999999998752 3478999999887654333
|
|
| >KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.48 Score=47.93 Aligned_cols=178 Identities=14% Similarity=0.091 Sum_probs=126.1
Q ss_pred HHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHHHcCC-----CHHHHHHHHHHHHHhccCchh--HHHHHhcchHHH
Q 004761 501 QLTQEHAVTALLNLSINDENKAMIAEAGAIEPLIHVLKSG-----NGGAKENSAAALFSLSVLEEY--KAKIGRSGAVKA 573 (732)
Q Consensus 501 ~~v~~~A~~~L~nLs~~~~~k~~i~~~g~l~~Lv~lL~~~-----~~e~~~~Aa~~L~~Ls~~~~~--k~~i~~~g~i~~ 573 (732)
..-..+|+..|.-++.+++.|..+..+..--.|-.+|..+ .+-.|..++++|..|..+++. ...+...+++|.
T Consensus 93 snRVcnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPl 172 (293)
T KOG3036|consen 93 SNRVCNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPL 172 (293)
T ss_pred cchHHHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHH
Confidence 4456888889988999999999999887655666777654 356899999999999876643 334556799999
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhccCchhHH-------HHHh-hchHHHHHHhc--CCChHHHHHHHHHHHHHhCChhhH
Q 004761 574 LVDLLGSGTLRGRKDAATALFNLSIFHENKA-------RIIQ-AGAVKHLVDLM--DPSTGMVDKAVALLANLSTVGEGR 643 (732)
Q Consensus 574 Lv~lL~~~~~~~~~~Al~aL~nLs~~~~n~~-------~lv~-~G~V~~Ll~lL--~~~~~l~e~al~iL~nLa~~~~~r 643 (732)
.+..+..|+...+..|..++..+-.++.+-. ++.. .-++..++.-+ .++..+...++.+.-+|+.++..|
T Consensus 173 CLrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnprar 252 (293)
T KOG3036|consen 173 CLRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPRAR 252 (293)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHH
Confidence 9999999999999999999998877664332 2222 12333333333 567888999999999999999888
Q ss_pred HHHHHc--CcH--HHHHHHHhcCCHHHHHHHHHHHHHHhc
Q 004761 644 LAIARE--GGI--PSLVEVVESGSQRGKENAASILLQLCL 679 (732)
Q Consensus 644 ~~i~~~--~~I--~~Lv~lL~~~s~~~~e~A~~~L~~L~~ 679 (732)
.++... +.+ .....+++ .++..+..-...+.++|.
T Consensus 253 ~aL~~clPd~Lrd~tfs~~l~-~D~~~k~~l~~ll~~l~~ 291 (293)
T KOG3036|consen 253 AALRSCLPDQLRDGTFSLLLK-DDPETKQWLQQLLKNLCT 291 (293)
T ss_pred HHHHhhCcchhccchHHHHHh-cChhHHHHHHHHHHHhcc
Confidence 877642 222 22333343 345556555555666654
|
|
| >smart00185 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.01 Score=42.60 Aligned_cols=40 Identities=43% Similarity=0.403 Sum_probs=35.9
Q ss_pred chhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhcc
Q 004761 559 EEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSI 598 (732)
Q Consensus 559 ~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~ 598 (732)
++++..+.+.|+++.|+++|.++++.+++.|+++|.||+.
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 3477888889999999999999899999999999999973
|
Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. |
| >KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.0018 Score=74.80 Aligned_cols=47 Identities=21% Similarity=0.523 Sum_probs=41.7
Q ss_pred CCccccccCcccCCC-----ceecCCCcccchHHHHHHHhcCCCCCCCCCCCC
Q 004761 237 PPYFRCPLSLELMID-----PVIVASGQTYERVFIQKWLDHGLNICPKTRQTL 284 (732)
Q Consensus 237 p~~f~Cpi~~~lm~d-----PV~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l 284 (732)
..+-.|+||.+.|.. |=.++|||.|...|+.+|++.. .+||.||..+
T Consensus 289 ~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~-qtCP~CR~~~ 340 (543)
T KOG0802|consen 289 LSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQ-QTCPTCRTVL 340 (543)
T ss_pred hcCCeeeeechhhccccccccceeecccchHHHHHHHHHHHh-CcCCcchhhh
Confidence 346789999999999 7789999999999999999984 7999999844
|
|
| >PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms [] | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.42 Score=49.15 Aligned_cols=191 Identities=15% Similarity=0.123 Sum_probs=129.4
Q ss_pred CHHHHHHHHHHHHHHhccChhhHHHHHh-cCCHHHHHHhhc-------cCC-----HHHHHHHHHHHHHhhcCCchHHHH
Q 004761 458 SNEIQASAAAELRLLAKHNMENRMIIGN-CGAIPPLLSLLY-------SEA-----QLTQEHAVTALLNLSINDENKAMI 524 (732)
Q Consensus 458 ~~~~~~~Al~~L~~La~~~~~~r~~i~~-~G~I~~Lv~lL~-------s~~-----~~v~~~A~~~L~nLs~~~~~k~~i 524 (732)
+++.+..|+.+|..--...++---.+-. .|.+..|+.=.- .+. ..-..+|+..|.-++.+++.|..+
T Consensus 8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~~F 87 (262)
T PF04078_consen 8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRMPF 87 (262)
T ss_dssp SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHHHH
T ss_pred CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHHHH
Confidence 5677888887776554433333333333 476666654321 221 234578888888889999999999
Q ss_pred HHcCCHHHHHHHHcCCC-----HHHHHHHHHHHHHhccCch--hHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 004761 525 AEAGAIEPLIHVLKSGN-----GGAKENSAAALFSLSVLEE--YKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLS 597 (732)
Q Consensus 525 ~~~g~l~~Lv~lL~~~~-----~e~~~~Aa~~L~~Ls~~~~--~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs 597 (732)
..+...-.|..+|+..+ +..|..+++++..|...++ .-..+...+.+|..+..+..|+.-.+..|..++..+-
T Consensus 88 l~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKIL 167 (262)
T PF04078_consen 88 LKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKIL 167 (262)
T ss_dssp HHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHHH
T ss_pred HHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 99887766777776543 5588899999999987543 3445567799999999999999999999999999887
Q ss_pred cCchhHH-------HHHh-hchHHHHHHhc--CCChHHHHHHHHHHHHHhCChhhHHHHHH
Q 004761 598 IFHENKA-------RIIQ-AGAVKHLVDLM--DPSTGMVDKAVALLANLSTVGEGRLAIAR 648 (732)
Q Consensus 598 ~~~~n~~-------~lv~-~G~V~~Ll~lL--~~~~~l~e~al~iL~nLa~~~~~r~~i~~ 648 (732)
.++.+-. ++.. ..++..++.-+ .+++.+....+.+-..|+.++.+|.++..
T Consensus 168 ~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnprar~aL~~ 228 (262)
T PF04078_consen 168 LDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPRAREALRQ 228 (262)
T ss_dssp HSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTTHHHHHHH
T ss_pred cchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHHHHHHHHH
Confidence 7665332 3222 23444444444 67888999999999999999988888774
|
Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B. |
| >COG1413 FOG: HEAT repeat [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.21 Score=54.12 Aligned_cols=159 Identities=33% Similarity=0.335 Sum_probs=111.5
Q ss_pred CCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHH
Q 004761 487 GAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIG 566 (732)
Q Consensus 487 G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~ 566 (732)
-.++.++.++.+.+..++..|...+..+. ...+++.+..+|...+..+|..|+.+|..+ +
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~----------~~~av~~l~~~l~d~~~~vr~~a~~aLg~~----------~ 102 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELG----------SEEAVPLLRELLSDEDPRVRDAAADALGEL----------G 102 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhc----------hHHHHHHHHHHhcCCCHHHHHHHHHHHHcc----------C
Confidence 46788889999888889988888865443 345789999999999999999998866544 2
Q ss_pred hcchHHHHHHhhc-CCCHHHHHHHHHHHHHhccCchhHHHHHhhchHHHHHHhc-CCChHHHHHHHHHHH-HHhCChhhH
Q 004761 567 RSGAVKALVDLLG-SGTLRGRKDAATALFNLSIFHENKARIIQAGAVKHLVDLM-DPSTGMVDKAVALLA-NLSTVGEGR 643 (732)
Q Consensus 567 ~~g~i~~Lv~lL~-~~~~~~~~~Al~aL~nLs~~~~n~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~-nLa~~~~~r 643 (732)
...+++.|+.++. +.+..++..|..+|..+-. ..++..++..+ +..... +...+. .+. ..|
T Consensus 103 ~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~----------~~a~~~l~~~l~~~~~~~---a~~~~~~~~~---~~r 166 (335)
T COG1413 103 DPEAVPPLVELLENDENEGVRAAAARALGKLGD----------ERALDPLLEALQDEDSGS---AAAALDAALL---DVR 166 (335)
T ss_pred ChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCc----------hhhhHHHHHHhccchhhh---hhhhccchHH---HHH
Confidence 2357899999999 5888999999999987643 23477788888 332211 111110 000 111
Q ss_pred ----HH---HHHcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Q 004761 644 ----LA---IAREGGIPSLVEVVESGSQRGKENAASILLQLCLHS 681 (732)
Q Consensus 644 ----~~---i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~ 681 (732)
.. +.....++.+...+......++..|+.+|..+...+
T Consensus 167 ~~a~~~l~~~~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~ 211 (335)
T COG1413 167 AAAAEALGELGDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN 211 (335)
T ss_pred HHHHHHHHHcCChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch
Confidence 11 122346888888998888889999999998887754
|
|
| >COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.39 Score=53.77 Aligned_cols=251 Identities=17% Similarity=0.185 Sum_probs=128.4
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCch-----
Q 004761 446 YVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDEN----- 520 (732)
Q Consensus 446 ~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~----- 520 (732)
..++|-..|++.-.-++.++++.+..++..+. -..+.+ ..+..|-.+|++.....+-.|+++|..|+.....
T Consensus 265 ~rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv--~~~~~~-~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vc 341 (898)
T COG5240 265 LRPFLNSWLSDKFEMVFLEAARAVCALSEENV--GSQFVD-QTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVC 341 (898)
T ss_pred HHHHHHHHhcCcchhhhHHHHHHHHHHHHhcc--CHHHHH-HHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeec
Confidence 34566666766667788899999998885541 111121 3577888889999999999999999999864221
Q ss_pred ---HHHHH-Hc-C--CHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHH
Q 004761 521 ---KAMIA-EA-G--AIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATAL 593 (732)
Q Consensus 521 ---k~~i~-~~-g--~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL 593 (732)
.+.++ +. . ..-.+..+|+.|+.+....-...+ +..++=+.+ ..+.-++-|+
T Consensus 342 N~evEsLIsd~Nr~IstyAITtLLKTGt~e~idrLv~~I-------------------~sfvhD~SD---~FKiI~ida~ 399 (898)
T COG5240 342 NKEVESLISDENRTISTYAITTLLKTGTEETIDRLVNLI-------------------PSFVHDMSD---GFKIIAIDAL 399 (898)
T ss_pred ChhHHHHhhcccccchHHHHHHHHHcCchhhHHHHHHHH-------------------HHHHHhhcc---CceEEeHHHH
Confidence 12222 11 1 122344455555444222222222 222111111 1122222222
Q ss_pred HHhccCchhH---------HHHHhhc-------hHHHHHHhcCCChHHHHHHHHHHHHHhC---ChhhHHHHH----HcC
Q 004761 594 FNLSIFHENK---------ARIIQAG-------AVKHLVDLMDPSTGMVDKAVALLANLST---VGEGRLAIA----REG 650 (732)
Q Consensus 594 ~nLs~~~~n~---------~~lv~~G-------~V~~Ll~lL~~~~~l~e~al~iL~nLa~---~~~~r~~i~----~~~ 650 (732)
..||..-+.+ ..+.+.| +|..+.++++-.+...+.|+..|+..-. .++....|. +.|
T Consensus 400 rsLsl~Fp~k~~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEraLe~LC~fIEDcey~~I~vrIL~iLG~Eg 479 (898)
T COG5240 400 RSLSLLFPSKKLSYLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKERALEVLCTFIEDCEYHQITVRILGILGREG 479 (898)
T ss_pred HHHHhhCcHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHhhcchhHHHHHHHHHhcccC
Confidence 2222211100 0111122 3334444443334455666555554422 222211221 111
Q ss_pred --------cHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHhhcc
Q 004761 651 --------GIPSLVEVVESGSQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFRNQ 722 (732)
Q Consensus 651 --------~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~~ 722 (732)
.+.-+...+--.+.-++..|+.+|..+..+-. ..+....+...|...++..++.+|..|..+|+.++..
T Consensus 480 P~a~~P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~---d~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~~~ 556 (898)
T COG5240 480 PRAKTPGKYVRHIYNRLILENNIVRSAAVQALSKFALNIS---DVVSPQSVENALKRCLNDQDDEVRDRASFLLRNMRLS 556 (898)
T ss_pred CCCCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCcc---ccccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhhhh
Confidence 12223222222355678888888877665311 1223334556778888889999999999999999865
Q ss_pred cc
Q 004761 723 RE 724 (732)
Q Consensus 723 ~~ 724 (732)
+.
T Consensus 557 da 558 (898)
T COG5240 557 DA 558 (898)
T ss_pred hh
Confidence 54
|
|
| >KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.0036 Score=66.59 Aligned_cols=45 Identities=20% Similarity=0.494 Sum_probs=39.4
Q ss_pred cccccCcccCCC--ce-ecCCCcccchHHHHHHHhcCCCCCCCCCCCC
Q 004761 240 FRCPLSLELMID--PV-IVASGQTYERVFIQKWLDHGLNICPKTRQTL 284 (732)
Q Consensus 240 f~Cpi~~~lm~d--PV-~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l 284 (732)
+.|-||+|-|++ -| +++|+|.|-..||..|+...+..||+|++..
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di 277 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDI 277 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcC
Confidence 799999999874 44 5899999999999999988777899999854
|
|
| >COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.0021 Score=61.50 Aligned_cols=45 Identities=16% Similarity=0.336 Sum_probs=41.1
Q ss_pred ccccccCcccCCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCC
Q 004761 239 YFRCPLSLELMIDPVIVASGQTYERVFIQKWLDHGLNICPKTRQTL 284 (732)
Q Consensus 239 ~f~Cpi~~~lm~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l 284 (732)
.|.|-||.+=++.||++.|||.||-.|-.+-++.| ++|-+|+...
T Consensus 196 PF~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~kg-~~C~~Cgk~t 240 (259)
T COG5152 196 PFLCGICKKDYESPVVTECGHSFCSLCAIRKYQKG-DECGVCGKAT 240 (259)
T ss_pred ceeehhchhhccchhhhhcchhHHHHHHHHHhccC-Ccceecchhh
Confidence 49999999999999999999999999988888877 7899998754
|
|
| >KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.11 Score=61.03 Aligned_cols=235 Identities=17% Similarity=0.134 Sum_probs=132.7
Q ss_pred cccCchHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHH-HHHHHHHHhhcCCc
Q 004761 441 VTTTPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQE-HAVTALLNLSINDE 519 (732)
Q Consensus 441 ~~~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~-~A~~~L~nLs~~~~ 519 (732)
......+..+++.|...+.++|..|++++.-+++.-++.+-. ..+.-|..-+-++....+. .++.....++.-+.
T Consensus 43 dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le----~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P 118 (1233)
T KOG1824|consen 43 DSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLE----TIVENLCSNMLSGKEQLRDISSIGLKTVIANLPP 118 (1233)
T ss_pred cchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHH----HHHHHHhhhhccchhhhccHHHHHHHHHHhcCCC
Confidence 334567889999999999999999999999998654443311 1233343332233222222 22222222222222
Q ss_pred hHHHHHHcCCHHHHHHHHcCC------CHHHHHHHHHHHHHhccC-chhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHH
Q 004761 520 NKAMIAEAGAIEPLIHVLKSG------NGGAKENSAAALFSLSVL-EEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATA 592 (732)
Q Consensus 520 ~k~~i~~~g~l~~Lv~lL~~~------~~e~~~~Aa~~L~~Ls~~-~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~a 592 (732)
.........+++.+...|..+ ...++..++..|..+-.. ...-.. ...+.+..++.-+.+....+++.|+.+
T Consensus 119 ~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~-fh~~il~~l~~ql~s~R~aVrKkai~~ 197 (1233)
T KOG1824|consen 119 SSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPN-FHLSILKCLLPQLQSPRLAVRKKAITA 197 (1233)
T ss_pred ccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcc-hHHHHHHHHhhcccChHHHHHHHHHHH
Confidence 222233344555555555433 223555555555443210 000000 112344445444555567789999999
Q ss_pred HHHhccCchhHHHHHhhchHHHHHHhc--CCChHHHHHHHHHHHHHhCChhhHHHHHHcCcHHHHHHHH---hcCCHHHH
Q 004761 593 LFNLSIFHENKARIIQAGAVKHLVDLM--DPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVV---ESGSQRGK 667 (732)
Q Consensus 593 L~nLs~~~~n~~~lv~~G~V~~Ll~lL--~~~~~l~e~al~iL~nLa~~~~~r~~i~~~~~I~~Lv~lL---~~~s~~~~ 667 (732)
|.+|+....+ ..-.+++..|++=| .........-..+|+.+|+....|.----...+|.+.++. ...+++.+
T Consensus 198 l~~la~~~~~---~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELr 274 (1233)
T KOG1824|consen 198 LGHLASSCNR---DLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDELR 274 (1233)
T ss_pred HHHHHHhcCH---HHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhhcccchhhHHHHHHhcccccCcHHHH
Confidence 9999875432 23446777777777 3344445555666666666443332111123578888888 66788999
Q ss_pred HHHHHHHHHHhcCChH
Q 004761 668 ENAASILLQLCLHSPK 683 (732)
Q Consensus 668 e~A~~~L~~L~~~~~~ 683 (732)
|+++.+|-.+-...|.
T Consensus 275 E~~lQale~fl~rcp~ 290 (1233)
T KOG1824|consen 275 EYCLQALESFLRRCPK 290 (1233)
T ss_pred HHHHHHHHHHHHhChh
Confidence 9999999888776654
|
|
| >PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10 | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.026 Score=49.63 Aligned_cols=66 Identities=24% Similarity=0.265 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHhC-ChhhHHHHHHcCcHHHHHHHH--hcCCHHHHHHHHHHHHHHhcCChHhHHHHHhC
Q 004761 626 VDKAVALLANLST-VGEGRLAIAREGGIPSLVEVV--ESGSQRGKENAASILLQLCLHSPKFCTLVLQE 691 (732)
Q Consensus 626 ~e~al~iL~nLa~-~~~~r~~i~~~~~I~~Lv~lL--~~~s~~~~e~A~~~L~~L~~~~~~~~~~v~~~ 691 (732)
....+.+|+|||. ++..+..+.+.|||+.++... +..+|-.+|.|+.++.+||.++++++..+.+.
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L 71 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQL 71 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 4567889999986 456788999999999999864 55789999999999999999999998888753
|
Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region []. |
| >KOG3039 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.005 Score=61.01 Aligned_cols=54 Identities=17% Similarity=0.386 Sum_probs=48.0
Q ss_pred CccccccCcccCCCce----ecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCccc
Q 004761 238 PYFRCPLSLELMIDPV----IVASGQTYERVFIQKWLDHGLNICPKTRQTLAHTNLIPN 292 (732)
Q Consensus 238 ~~f~Cpi~~~lm~dPV----~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn 292 (732)
..|.||+|.+.+.+-+ .-+|||.++..|.++.+..+ ..||+|+.++.+.++++-
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D-~v~pv~d~plkdrdiI~L 277 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKD-MVDPVTDKPLKDRDIIGL 277 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhcccc-ccccCCCCcCcccceEee
Confidence 6899999999988864 34899999999999999876 789999999999999884
|
|
| >KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.4 Score=54.44 Aligned_cols=217 Identities=15% Similarity=0.177 Sum_probs=139.8
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCH----HHHHHhhccCCHHHHHHHHHHHHHhhcCCchH
Q 004761 446 YVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAI----PPLLSLLYSEAQLTQEHAVTALLNLSINDENK 521 (732)
Q Consensus 446 ~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I----~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k 521 (732)
.++.++....+...+++..|..+.+.+...-+ ..++ |.++.-+..........++..|..++....-.
T Consensus 217 ~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~--------~~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~q 288 (569)
T KOG1242|consen 217 ILPSILTNFGDKINKVREAAVEAAKAIMRCLS--------AYAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQ 288 (569)
T ss_pred hHHHHHHHhhccchhhhHHHHHHHHHHHHhcC--------cchhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHH
Confidence 34566666666677777777766666553321 2333 33333333335567788899999888766666
Q ss_pred HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhccCch
Q 004761 522 AMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFHE 601 (732)
Q Consensus 522 ~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~ 601 (732)
........+|.+.++|.+..++++..+..+|..+...-+|.+.. -.+|.|++.+.+.+.. ...++..|..-...
T Consensus 289 Ls~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~---~~ip~Lld~l~dp~~~-~~e~~~~L~~ttFV-- 362 (569)
T KOG1242|consen 289 LSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQ---KIIPTLLDALADPSCY-TPECLDSLGATTFV-- 362 (569)
T ss_pred HHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHH---HHHHHHHHHhcCcccc-hHHHHHhhcceeee--
Confidence 66667889999999999999999999999999998877666622 3578888888765422 22233333221111
Q ss_pred hHHHHHhhchHHHHHHhc-----CCChHHHHHHHHHHHHHhCChhhHHHHHHc--CcHHHHHHHHhcCCHHHHHHHHHHH
Q 004761 602 NKARIIQAGAVKHLVDLM-----DPSTGMVDKAVALLANLSTVGEGRLAIARE--GGIPSLVEVVESGSQRGKENAASIL 674 (732)
Q Consensus 602 n~~~lv~~G~V~~Ll~lL-----~~~~~l~e~al~iL~nLa~~~~~r~~i~~~--~~I~~Lv~lL~~~s~~~~e~A~~~L 674 (732)
..|++-.+..++.+| ..+..+...++.++.|+|.--+....+... ..+|.|-..+...-|++|+-+..+|
T Consensus 363 ---~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL 439 (569)
T KOG1242|consen 363 ---AEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARAL 439 (569)
T ss_pred ---eeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHH
Confidence 112233344444444 456677889999999998865444444331 1344444555556799999999999
Q ss_pred HHHhc
Q 004761 675 LQLCL 679 (732)
Q Consensus 675 ~~L~~ 679 (732)
..+-.
T Consensus 440 ~~l~e 444 (569)
T KOG1242|consen 440 GALLE 444 (569)
T ss_pred HHHHH
Confidence 77765
|
|
| >KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.81 Score=46.33 Aligned_cols=178 Identities=16% Similarity=0.083 Sum_probs=122.8
Q ss_pred HHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCC-----CHHHHHHHHHHHHHhccCch--hHHHHHhhchHHHH
Q 004761 543 GAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSG-----TLRGRKDAATALFNLSIFHE--NKARIIQAGAVKHL 615 (732)
Q Consensus 543 e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~-----~~~~~~~Al~aL~nLs~~~~--n~~~lv~~G~V~~L 615 (732)
.-..+|...|-.++++++.|..+.....=-.|-.+|..+ ..-.+-.++..|..|..+++ ....+...++||..
T Consensus 94 nRVcnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlC 173 (293)
T KOG3036|consen 94 NRVCNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLC 173 (293)
T ss_pred chHHHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHH
Confidence 344688888888999999988888765544444555432 24567789999999988654 45577889999999
Q ss_pred HHhc-CCChHHHHHHHHHHHHHhCChhhHHHHHHc----CcH----HHH-HHHHhcCCHHHHHHHHHHHHHHhcCChHhH
Q 004761 616 VDLM-DPSTGMVDKAVALLANLSTVGEGRLAIARE----GGI----PSL-VEVVESGSQRGKENAASILLQLCLHSPKFC 685 (732)
Q Consensus 616 l~lL-~~~~~l~e~al~iL~nLa~~~~~r~~i~~~----~~I----~~L-v~lL~~~s~~~~e~A~~~L~~L~~~~~~~~ 685 (732)
++.+ .++...+.-|..++..+.....|-.-+.+. -+| ..+ .++.+.++++.-.+++.+..+||. ++..+
T Consensus 174 Lrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsd-nprar 252 (293)
T KOG3036|consen 174 LRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSD-NPRAR 252 (293)
T ss_pred HHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcC-CHHHH
Confidence 9999 556666777888888888777775544431 122 222 234456899999999999999998 67766
Q ss_pred HHHHh---CCCHHHHHHchhcCChHHHHHHHHHHHHhhc
Q 004761 686 TLVLQ---EGAVPPLVGLSQSGTPRAKEKAQQLLSHFRN 721 (732)
Q Consensus 686 ~~v~~---~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~ 721 (732)
..+.. .+.-..-...+-.+++..|+.-+.++.++..
T Consensus 253 ~aL~~clPd~Lrd~tfs~~l~~D~~~k~~l~~ll~~l~~ 291 (293)
T KOG3036|consen 253 AALRSCLPDQLRDGTFSLLLKDDPETKQWLQQLLKNLCT 291 (293)
T ss_pred HHHHhhCcchhccchHHHHHhcChhHHHHHHHHHHHhcc
Confidence 65543 2222222333334567788888888877653
|
|
| >KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.69 Score=53.91 Aligned_cols=253 Identities=18% Similarity=0.190 Sum_probs=139.7
Q ss_pred CchHHHHHHHhcCCCHHHHHHHHHHHHHHhccChh--------hHHHHHhc--C----CHHHHHHhhccC------CHHH
Q 004761 444 TPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNME--------NRMIIGNC--G----AIPPLLSLLYSE------AQLT 503 (732)
Q Consensus 444 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~--------~r~~i~~~--G----~I~~Lv~lL~s~------~~~v 503 (732)
....+...++|+..++.++++|+-+...+-...++ .|..+.+. | ++..+.++.+-+ ..++
T Consensus 141 rdlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l 220 (866)
T KOG1062|consen 141 RDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEHFVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRDL 220 (866)
T ss_pred HHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHHH
Confidence 34557777888889999999988887777666553 23333331 2 333444444321 1234
Q ss_pred HHHHHHHHHHhhcCC---c-hHHHHHHc---CCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHHhc---chHHH
Q 004761 504 QEHAVTALLNLSIND---E-NKAMIAEA---GAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRS---GAVKA 573 (732)
Q Consensus 504 ~~~A~~~L~nLs~~~---~-~k~~i~~~---g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~---g~i~~ 573 (732)
...-+.+|.++.... + +...|-+. =-+=.++.+|.+++.++...+..+|..++..-+.-.-+|.. ..+..
T Consensus 221 ~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~T 300 (866)
T KOG1062|consen 221 VPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRT 300 (866)
T ss_pred HHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHH
Confidence 555666666664321 1 11111000 00223455667777777777777777776533322222222 12222
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhccCchhHHHHHh-----------hchH----HHHHHhc-CCChHHHHHHHHHHHHHh
Q 004761 574 LVDLLGSGTLRGRKDAATALFNLSIFHENKARIIQ-----------AGAV----KHLVDLM-DPSTGMVDKAVALLANLS 637 (732)
Q Consensus 574 Lv~lL~~~~~~~~~~Al~aL~nLs~~~~n~~~lv~-----------~G~V----~~Ll~lL-~~~~~l~e~al~iL~nLa 637 (732)
+..+. .+...+..|+.+|.....+++|-.+-+. ..+| ..+++.| +++..++.+|+.++..|.
T Consensus 301 I~~I~--~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lv 378 (866)
T KOG1062|consen 301 IMDIR--SNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALV 378 (866)
T ss_pred HHhcc--CCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHh
Confidence 22221 2345556666666655554443221111 1122 2456666 777888888888888776
Q ss_pred CChhhHHHHHHcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhcC-ChHhHHH------H-------HhCCCHHHHHHchhc
Q 004761 638 TVGEGRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCLH-SPKFCTL------V-------LQEGAVPPLVGLSQS 703 (732)
Q Consensus 638 ~~~~~r~~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~-~~~~~~~------v-------~~~G~i~~L~~Ll~~ 703 (732)
.....+. .+..|+.+|...++..+...++-+..+... .|+.+.. | +...++..|+.++.+
T Consensus 379 n~~Nv~~------mv~eLl~fL~~~d~~~k~~~as~I~~laEkfaP~k~W~idtml~Vl~~aG~~V~~dv~~nll~LIa~ 452 (866)
T KOG1062|consen 379 NESNVRV------MVKELLEFLESSDEDFKADIASKIAELAEKFAPDKRWHIDTMLKVLKTAGDFVNDDVVNNLLRLIAN 452 (866)
T ss_pred ccccHHH------HHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccchhhHHHHHHHHhc
Confidence 6443332 245577777777888888888888777763 4442221 1 233567788888887
Q ss_pred C
Q 004761 704 G 704 (732)
Q Consensus 704 g 704 (732)
+
T Consensus 453 ~ 453 (866)
T KOG1062|consen 453 A 453 (866)
T ss_pred C
Confidence 7
|
|
| >KOG3039 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.0055 Score=60.76 Aligned_cols=37 Identities=32% Similarity=0.586 Sum_probs=33.0
Q ss_pred CCCccccccCcccCCCceecCCCcccchHHHHHHHhc
Q 004761 236 IPPYFRCPLSLELMIDPVIVASGQTYERVFIQKWLDH 272 (732)
Q Consensus 236 ~p~~f~Cpi~~~lm~dPV~~~~g~ty~r~~I~~~~~~ 272 (732)
|-+.=+|.+|++..+|||+.+.|+.|||.||.+++..
T Consensus 40 iK~FdcCsLtLqPc~dPvit~~GylfdrEaILe~ila 76 (303)
T KOG3039|consen 40 IKPFDCCSLTLQPCRDPVITPDGYLFDREAILEYILA 76 (303)
T ss_pred cCCcceeeeecccccCCccCCCCeeeeHHHHHHHHHH
Confidence 5455589999999999999999999999999999853
|
|
| >PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.071 Score=52.84 Aligned_cols=120 Identities=21% Similarity=0.192 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHHhccCchhHHHHHh----------------hchHHHHHHhc-C------CChHHHHHHHHHHHHHhCC
Q 004761 583 LRGRKDAATALFNLSIFHENKARIIQ----------------AGAVKHLVDLM-D------PSTGMVDKAVALLANLSTV 639 (732)
Q Consensus 583 ~~~~~~Al~aL~nLs~~~~n~~~lv~----------------~G~V~~Ll~lL-~------~~~~l~e~al~iL~nLa~~ 639 (732)
......++..|.||+.....+..+++ ...+..|++++ . ....-.+..+.+|.|++..
T Consensus 9 ~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~~ 88 (192)
T PF04063_consen 9 SPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQL 88 (192)
T ss_pred cchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcCC
Confidence 34556678888899888777765544 23667777777 3 1234567889999999999
Q ss_pred hhhHHHHHHcC--c--HHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHhHHHHHh--CCCHHHHHHchh
Q 004761 640 GEGRLAIAREG--G--IPSLVEVVESGSQRGKENAASILLQLCLHSPKFCTLVLQ--EGAVPPLVGLSQ 702 (732)
Q Consensus 640 ~~~r~~i~~~~--~--I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~v~~--~G~i~~L~~Ll~ 702 (732)
++||.-+.+.. . +..|+.++.+.|..-+.-++++|.|+|.....+...+-+ .+++|.|+.-+-
T Consensus 89 ~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPLa 157 (192)
T PF04063_consen 89 PEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPLA 157 (192)
T ss_pred HHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhcc
Confidence 99999998643 3 677777777788888999999999999966555444443 377887777665
|
It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO). |
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.44 Score=56.90 Aligned_cols=216 Identities=16% Similarity=0.152 Sum_probs=150.6
Q ss_pred HHHHHHHHHHhhcC----CchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHh-ccCchhHHHHHhcchHHHHHHhh
Q 004761 504 QEHAVTALLNLSIN----DENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSL-SVLEEYKAKIGRSGAVKALVDLL 578 (732)
Q Consensus 504 ~~~A~~~L~nLs~~----~~~k~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~L-s~~~~~k~~i~~~g~i~~Lv~lL 578 (732)
|.+=+++|.-|+.- +-....-..-|.+|.++++|++...|.|..-+-+=..+ +.++..+..+...++-...+..|
T Consensus 484 QvHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL 563 (1387)
T KOG1517|consen 484 QVHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVL 563 (1387)
T ss_pred HHHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEe
Confidence 45555666666542 22333344679999999999999888886655544444 45556677777776666677777
Q ss_pred cCC---CHHHHHHHHHHHHHhccC-chhHHHHHhhchHHHHHHhc-CC-ChHHHHHHHHHHHHHh-CChhhHHHHHHcCc
Q 004761 579 GSG---TLRGRKDAATALFNLSIF-HENKARIIQAGAVKHLVDLM-DP-STGMVDKAVALLANLS-TVGEGRLAIAREGG 651 (732)
Q Consensus 579 ~~~---~~~~~~~Al~aL~nLs~~-~~n~~~lv~~G~V~~Ll~lL-~~-~~~l~e~al~iL~nLa-~~~~~r~~i~~~~~ 651 (732)
..+ +++-+..|+.+|..++.+ +-.+....+.+.+...++.| ++ .+-+..-++-+|+.|= ...+.|-.-.+.++
T Consensus 564 ~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~A 643 (1387)
T KOG1517|consen 564 DPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNA 643 (1387)
T ss_pred cCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccH
Confidence 662 357778888888888774 55777788899999999999 43 4666777777788773 34555555556788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhcCC----hHhHHHH---H--------hCCCHH----HHHHchhcCChHHHHHH
Q 004761 652 IPSLVEVVESGSQRGKENAASILLQLCLHS----PKFCTLV---L--------QEGAVP----PLVGLSQSGTPRAKEKA 712 (732)
Q Consensus 652 I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~----~~~~~~v---~--------~~G~i~----~L~~Ll~~g~~~~k~kA 712 (732)
...|..+|....++++..|+-+|..+..+. ++....+ + -+..+. .|+.+++.|++-++...
T Consensus 644 hekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev 723 (1387)
T KOG1517|consen 644 HEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEV 723 (1387)
T ss_pred HHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHH
Confidence 999999999999999999999999988742 2211111 1 122333 67888889999888776
Q ss_pred HHHHHHh
Q 004761 713 QQLLSHF 719 (732)
Q Consensus 713 ~~lL~~l 719 (732)
...|..+
T Consensus 724 ~v~ls~~ 730 (1387)
T KOG1517|consen 724 VVALSHF 730 (1387)
T ss_pred HHHHHHH
Confidence 6666554
|
|
| >KOG2259 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.11 Score=59.08 Aligned_cols=249 Identities=19% Similarity=0.191 Sum_probs=148.9
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHH---Hhhc---CC-ch
Q 004761 448 KKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALL---NLSI---ND-EN 520 (732)
Q Consensus 448 ~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~---nLs~---~~-~~ 520 (732)
..|+.....++..++..|+..|-.|.....-.+ -.....+++++.++..++..|+.++. |... .. .+
T Consensus 201 ~~l~~~~~~~D~~Vrt~A~eglL~L~eg~kL~~------~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~ 274 (823)
T KOG2259|consen 201 RGLIYLEHDQDFRVRTHAVEGLLALSEGFKLSK------ACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESE 274 (823)
T ss_pred HHHHHHhcCCCcchHHHHHHHHHhhcccccccH------HHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhh
Confidence 347777788888889999998888775322111 23456788899889999988876654 4431 11 12
Q ss_pred HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHH-h--c
Q 004761 521 KAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFN-L--S 597 (732)
Q Consensus 521 k~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~n-L--s 597 (732)
...+. ..++..+...+.+.+..+|..|+.+|..+-...+ ..|... .=..++.-++ ..+.....-+.++. . +
T Consensus 275 e~kl~-D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSe--e~i~QT-LdKKlms~lR--Rkr~ahkrpk~l~s~GewS 348 (823)
T KOG2259|consen 275 EEKLK-DAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSE--EIIQQT-LDKKLMSRLR--RKRTAHKRPKALYSSGEWS 348 (823)
T ss_pred hhhhH-HHHHHHHHHHHhcCceeeeehHHHHhchHHHhHH--HHHHHH-HHHHHhhhhh--hhhhcccchHHHHhcCCcc
Confidence 23333 3468889999999999999999988876643211 111100 0001111011 01111122222221 1 1
Q ss_pred c------------CchhHHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCChhhHHHHHHcCcHHHHHHHHhcCCH
Q 004761 598 I------------FHENKARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVESGSQ 664 (732)
Q Consensus 598 ~------------~~~n~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~~r~~i~~~~~I~~Lv~lL~~~s~ 664 (732)
+ .++.-..++..|+-..++.-| ++--++...|++.++.|+.+..+=. ..++..|+.++...-.
T Consensus 349 sGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA----~~aldfLvDMfNDE~~ 424 (823)
T KOG2259|consen 349 SGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFA----VRALDFLVDMFNDEIE 424 (823)
T ss_pred cCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcH----HHHHHHHHHHhccHHH
Confidence 1 011234578888888888888 6667889999999999987543211 1257788899988888
Q ss_pred HHHHHHHHHHHHHhcCChHhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHH
Q 004761 665 RGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSH 718 (732)
Q Consensus 665 ~~~e~A~~~L~~L~~~~~~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~ 718 (732)
.++..|+.+|..+..+ ..+++..++.++.-+..-.+.+|+.+..+|++
T Consensus 425 ~VRL~ai~aL~~Is~~------l~i~eeql~~il~~L~D~s~dvRe~l~elL~~ 472 (823)
T KOG2259|consen 425 VVRLKAIFALTMISVH------LAIREEQLRQILESLEDRSVDVREALRELLKN 472 (823)
T ss_pred HHHHHHHHHHHHHHHH------heecHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 8999999999888774 22333334444444444444454444444443
|
|
| >PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.042 Score=42.43 Aligned_cols=55 Identities=27% Similarity=0.039 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 004761 542 GGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNL 596 (732)
Q Consensus 542 ~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nL 596 (732)
+.+|..|+++|.+++........-....+++.|+.+|++.++.++..|+.+|.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 4678999999999876555444445557999999999999999999999999875
|
... |
| >KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.82 Score=53.03 Aligned_cols=267 Identities=16% Similarity=0.118 Sum_probs=164.0
Q ss_pred HHHHHHHhcC--CCHHHHHHHHHHHHHHhccChhhHHHHHhcC-CHHHHHHhhccCCHHHHHHHHHHHHHhhc-CCchHH
Q 004761 447 VKKLIEDLNS--TSNEIQASAAAELRLLAKHNMENRMIIGNCG-AIPPLLSLLYSEAQLTQEHAVTALLNLSI-NDENKA 522 (732)
Q Consensus 447 i~~Lv~~L~s--~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G-~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~-~~~~k~ 522 (732)
+-.++..... ++..++..|+.+|.+--.-...|-..=.+-+ .+...+..-.++|.+++..|..+|..+.. .-+...
T Consensus 174 LtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~ 253 (859)
T KOG1241|consen 174 LTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFME 253 (859)
T ss_pred HHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555543 4567888888888765421111111111112 33445566678899999999999988743 212222
Q ss_pred HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCc-h----------------hHHHH-H-hcchHHHHHHhhcCC--
Q 004761 523 MIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLE-E----------------YKAKI-G-RSGAVKALVDLLGSG-- 581 (732)
Q Consensus 523 ~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~-~----------------~k~~i-~-~~g~i~~Lv~lL~~~-- 581 (732)
.-+....+..-+.-+++.++++...+.-.-.+++..+ + ++... + ..+++|.|+++|...
T Consensus 254 ~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde 333 (859)
T KOG1241|consen 254 PYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDE 333 (859)
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCC
Confidence 2222334444556677888888777776655554311 1 01111 1 126788888888541
Q ss_pred -----CHHHHHHHHHHHHHhccCchhHHHHHhhchHHHHHHhc-----CCChHHHHHHHHHHHHHhCChhh-HHHHHHcC
Q 004761 582 -----TLRGRKDAATALFNLSIFHENKARIIQAGAVKHLVDLM-----DPSTGMVDKAVALLANLSTVGEG-RLAIAREG 650 (732)
Q Consensus 582 -----~~~~~~~Al~aL~nLs~~~~n~~~lv~~G~V~~Ll~lL-----~~~~~l~e~al~iL~nLa~~~~~-r~~i~~~~ 650 (732)
+...-++|..+|.-++. .+...+|++++.++ +++..-.+.|+-+++.+-..++. +-.-+-.+
T Consensus 334 ~~d~DdWnp~kAAg~CL~l~A~-------~~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~q 406 (859)
T KOG1241|consen 334 DDDDDDWNPAKAAGVCLMLFAQ-------CVGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQ 406 (859)
T ss_pred CcccccCcHHHHHHHHHHHHHH-------HhcccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhh
Confidence 23455666677765543 34445777777776 56667788888888888776653 22333457
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHhHHH-HHhCCCHHHHHHchhcCChHHHHHHHHHHHHhhc
Q 004761 651 GIPSLVEVVESGSQRGKENAASILLQLCLHSPKFCTL-VLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFRN 721 (732)
Q Consensus 651 ~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~-v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~ 721 (732)
++|.++.++...+--++.-+.|.|..+|.+.++.+.- ....+.++.|+.-++ +.|++..++.+.+-.|.+
T Consensus 407 alp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~-DePrva~N~CWAf~~Lae 477 (859)
T KOG1241|consen 407 ALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLN-DEPRVASNVCWAFISLAE 477 (859)
T ss_pred hhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhh-hCchHHHHHHHHHHHHHH
Confidence 8999999999888889999999999999987653332 222344555555443 468888888888877764
|
|
| >PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10 | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.08 Score=46.60 Aligned_cols=65 Identities=26% Similarity=0.322 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhc--cCCHHHHHHHHHHHHHhhcC-CchHHHHHH
Q 004761 462 QASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLY--SEAQLTQEHAVTALLNLSIN-DENKAMIAE 526 (732)
Q Consensus 462 ~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~--s~~~~v~~~A~~~L~nLs~~-~~~k~~i~~ 526 (732)
+...++.|.+++..++.++..+.+.|+||.+++.-. ..+|-+++.|+.++.||+.+ ++|+..+.+
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~ 70 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ 70 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 456678899999999999999999999999998764 45799999999999999876 667777664
|
Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region []. |
| >COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.031 Score=58.74 Aligned_cols=48 Identities=17% Similarity=0.427 Sum_probs=40.3
Q ss_pred CCccccccCcccC-CCc------------eecCCCcccchHHHHHHHhcCCCCCCCCCCCCC
Q 004761 237 PPYFRCPLSLELM-IDP------------VIVASGQTYERVFIQKWLDHGLNICPKTRQTLA 285 (732)
Q Consensus 237 p~~f~Cpi~~~lm-~dP------------V~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~ 285 (732)
-++-.|-||++=| +-| =-++|||.+--+|++.|++.. .|||.||.|+-
T Consensus 285 n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERq-QTCPICr~p~i 345 (491)
T COG5243 285 NSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQ-QTCPICRRPVI 345 (491)
T ss_pred CCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhc-cCCCcccCccc
Confidence 3677899999874 433 679999999999999999876 79999999953
|
|
| >KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.014 Score=59.23 Aligned_cols=49 Identities=18% Similarity=0.243 Sum_probs=41.1
Q ss_pred CCccccccCcccCCCceecC-CCcccchHHHHHHHhc-CCCCCCCCCCCCC
Q 004761 237 PPYFRCPLSLELMIDPVIVA-SGQTYERVFIQKWLDH-GLNICPKTRQTLA 285 (732)
Q Consensus 237 p~~f~Cpi~~~lm~dPV~~~-~g~ty~r~~I~~~~~~-~~~~cP~~~~~l~ 285 (732)
-.+-.||+|++--.-|.++. |||.||--||..-+.- ...+||.||.+..
T Consensus 237 t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 237 TSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred cCCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 45788999999999999875 9999999999997653 3468999997653
|
|
| >PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4 | Back alignment and domain information |
|---|
Probab=95.24 E-value=2.1 Score=51.45 Aligned_cols=238 Identities=18% Similarity=0.149 Sum_probs=144.8
Q ss_pred HHHhcCCHHHHHHhhcc-----CCHHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHHHc----CCC----HHHHHHH
Q 004761 482 IIGNCGAIPPLLSLLYS-----EAQLTQEHAVTALLNLSINDENKAMIAEAGAIEPLIHVLK----SGN----GGAKENS 548 (732)
Q Consensus 482 ~i~~~G~I~~Lv~lL~s-----~~~~v~~~A~~~L~nLs~~~~~k~~i~~~g~l~~Lv~lL~----~~~----~e~~~~A 548 (732)
.+.+.||+..|+.++.+ .........+.+|.-.+....||+.+.+.|+++.|+..|. .+. .++.+..
T Consensus 112 v~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~L 191 (802)
T PF13764_consen 112 VLAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQL 191 (802)
T ss_pred HhhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHH
Confidence 34567999999999964 3455666677777777777899999999999999998874 333 5666666
Q ss_pred HHHHHHhccCchh---HHHHH----------hcchHHHHHHhhcCC----CHHHHHHHHHHHHHhccCchhHHHHHhhch
Q 004761 549 AAALFSLSVLEEY---KAKIG----------RSGAVKALVDLLGSG----TLRGRKDAATALFNLSIFHENKARIIQAGA 611 (732)
Q Consensus 549 a~~L~~Ls~~~~~---k~~i~----------~~g~i~~Lv~lL~~~----~~~~~~~Al~aL~nLs~~~~n~~~lv~~G~ 611 (732)
..++..|...... ..... ...-+..|++.+.+. ++......+++|-+|+.........+-.-.
T Consensus 192 L~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~F 271 (802)
T PF13764_consen 192 LEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEHF 271 (802)
T ss_pred HHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHHH
Confidence 6666666432111 11101 112356666666543 578888889999999997766543322111
Q ss_pred HHHHHHhc--CC----Ch-HHHHHHHHHHHHHhCCh---hhHHHHHHcCcHHHHHHHHhcC--------CHHH-------
Q 004761 612 VKHLVDLM--DP----ST-GMVDKAVALLANLSTVG---EGRLAIAREGGIPSLVEVVESG--------SQRG------- 666 (732)
Q Consensus 612 V~~Ll~lL--~~----~~-~l~e~al~iL~nLa~~~---~~r~~i~~~~~I~~Lv~lL~~~--------s~~~------- 666 (732)
.+.+++= +. +. -..+..+.+..++-.+. .-|..+++.|.+...+++|... +++-
T Consensus 272 -~p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~p 350 (802)
T PF13764_consen 272 -KPYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSRP 350 (802)
T ss_pred -HHhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcCC
Confidence 2222321 11 11 12223333333333333 2367888999998888887432 3332
Q ss_pred -HHHHHHHHHHHhcCChHhHHHHHhCCCHHHHHHchhcCC-hHHHHHHHHHHHHhhc
Q 004761 667 -KENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGT-PRAKEKAQQLLSHFRN 721 (732)
Q Consensus 667 -~e~A~~~L~~L~~~~~~~~~~v~~~G~i~~L~~Ll~~g~-~~~k~kA~~lL~~l~~ 721 (732)
-..++..|.-||.+....+ .++..++++.|-.|=+..+ ..+-.-|-.+|..+++
T Consensus 351 sLp~iL~lL~GLa~gh~~tQ-~~~~~~~l~~lH~LEqvss~~~IGslAEnlLeal~~ 406 (802)
T PF13764_consen 351 SLPYILRLLRGLARGHEPTQ-LLIAEQLLPLLHRLEQVSSEEHIGSLAENLLEALAE 406 (802)
T ss_pred cHHHHHHHHHHHHhcCHHHH-HHHHhhHHHHHHHhhcCCCccchHHHHHHHHHHHhc
Confidence 3457788888888655433 3455667777776666543 3455566666666655
|
|
| >COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.015 Score=59.59 Aligned_cols=47 Identities=19% Similarity=0.463 Sum_probs=38.4
Q ss_pred cccccCcccC--CCce-ecCCCcccchHHHHHHHhcCCCCCCCCCCCCCC
Q 004761 240 FRCPLSLELM--IDPV-IVASGQTYERVFIQKWLDHGLNICPKTRQTLAH 286 (732)
Q Consensus 240 f~Cpi~~~lm--~dPV-~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~ 286 (732)
.-|-||++=+ -|-+ ++||.|.|-+.||++|+..-...||+|+.++++
T Consensus 324 veCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 324 VECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred ceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 5699998755 3444 579999999999999999766789999987753
|
|
| >KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.07 E-value=2.1 Score=50.03 Aligned_cols=247 Identities=15% Similarity=0.166 Sum_probs=114.7
Q ss_pred CHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccC----C--HHHHHHHHHHHHHhhcCCchHHHHHHcCCHH
Q 004761 458 SNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSE----A--QLTQEHAVTALLNLSINDENKAMIAEAGAIE 531 (732)
Q Consensus 458 ~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~----~--~~v~~~A~~~L~nLs~~~~~k~~i~~~g~l~ 531 (732)
+|-.|.+.++.|+.|.+.+.+..+.|.+ .|-+..... | -.+..+++.++..+ .++....+. ++.
T Consensus 247 dPFLQi~iLrlLriLGq~d~daSd~M~D-----iLaqvatntdsskN~GnAILYE~V~TI~~I--~~~~~Lrvl---ain 316 (866)
T KOG1062|consen 247 DPFLQIRILRLLRILGQNDADASDLMND-----ILAQVATNTDSSKNAGNAILYECVRTIMDI--RSNSGLRVL---AIN 316 (866)
T ss_pred chHHHHHHHHHHHHhcCCCccHHHHHHH-----HHHHHHhcccccccchhHHHHHHHHHHHhc--cCCchHHHH---HHH
Confidence 4556667777777776665554444433 222333211 1 23444555555222 222211111 234
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhccCchhHHHHHhhch
Q 004761 532 PLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFHENKARIIQAGA 611 (732)
Q Consensus 532 ~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~n~~~lv~~G~ 611 (732)
.|-++|.+.+-.+|..|+..|..+...+.+...=-+ ..+++.|++.+...++.|+..++.|.... |... .
T Consensus 317 iLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr----~tIleCL~DpD~SIkrralELs~~lvn~~-Nv~~-----m 386 (866)
T KOG1062|consen 317 ILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHR----STILECLKDPDVSIKRRALELSYALVNES-NVRV-----M 386 (866)
T ss_pred HHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHH----HHHHHHhcCCcHHHHHHHHHHHHHHhccc-cHHH-----H
Confidence 444555555555555555555554433322111111 34566666666777777766666654332 2222 3
Q ss_pred HHHHHHhc-CCChHHHHHHHHHHHHHhC--ChhhH------HH-------HHHcCcHHHHHHHHhcCCHHHHHHHHHHHH
Q 004761 612 VKHLVDLM-DPSTGMVDKAVALLANLST--VGEGR------LA-------IAREGGIPSLVEVVESGSQRGKENAASILL 675 (732)
Q Consensus 612 V~~Ll~lL-~~~~~l~e~al~iL~nLa~--~~~~r------~~-------i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L~ 675 (732)
++.|+++| ..+......+..-+..++. .|+.+ .. +++.+.+..++.++.++.++..++++..|+
T Consensus 387 v~eLl~fL~~~d~~~k~~~as~I~~laEkfaP~k~W~idtml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y~~~rLy 466 (866)
T KOG1062|consen 387 VKELLEFLESSDEDFKADIASKIAELAEKFAPDKRWHIDTMLKVLKTAGDFVNDDVVNNLLRLIANAFQELHEYAVLRLY 466 (866)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccchhhHHHHHHHHhcCCcchhhHHHHHHH
Confidence 34566666 4455555555544444443 11111 01 112234556666665554444444443333
Q ss_pred HHhcCC------------------hHhHHH------------HHhCCCHHHHHHchhcCC--hHHHHHHHHHHHHhhccc
Q 004761 676 QLCLHS------------------PKFCTL------------VLQEGAVPPLVGLSQSGT--PRAKEKAQQLLSHFRNQR 723 (732)
Q Consensus 676 ~L~~~~------------------~~~~~~------------v~~~G~i~~L~~Ll~~g~--~~~k~kA~~lL~~l~~~~ 723 (732)
.-...+ +++-+. +-+..++..|..++.+.. ..+|..|..+|--|+...
T Consensus 467 ~a~~~~~~~~is~e~l~qVa~W~IGEYGdlll~~~~~~~p~~vtesdivd~l~~v~~~~~s~~~tk~yal~Al~KLSsr~ 546 (866)
T KOG1062|consen 467 LALSEDTLLDISQEPLLQVASWCIGEYGDLLLDGANEEEPIKVTESDIVDKLEKVLMSHSSDSTTKGYALTALLKLSSRF 546 (866)
T ss_pred HHHhhhhhhhhhhhhHHHHHHHHhhhhhHHhhcCccccCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhc
Confidence 322211 011111 112346777888887764 567777777665555443
Q ss_pred c
Q 004761 724 E 724 (732)
Q Consensus 724 ~ 724 (732)
+
T Consensus 547 ~ 547 (866)
T KOG1062|consen 547 H 547 (866)
T ss_pred c
Confidence 3
|
|
| >KOG1248 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.04 E-value=1.2 Score=54.06 Aligned_cols=214 Identities=18% Similarity=0.223 Sum_probs=126.9
Q ss_pred ccCCHHHHHHHHHHHHHhhcCCchHHHHHH--cCCHHHHHHHHcCCCHHHHHHHHHHHHHhccC--chhHHHHHhcchHH
Q 004761 497 YSEAQLTQEHAVTALLNLSINDENKAMIAE--AGAIEPLIHVLKSGNGGAKENSAAALFSLSVL--EEYKAKIGRSGAVK 572 (732)
Q Consensus 497 ~s~~~~v~~~A~~~L~nLs~~~~~k~~i~~--~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~--~~~k~~i~~~g~i~ 572 (732)
++.+..+|..+.++|..++..+........ ......|..-+++...-++.....+|..|-.. .+....+. ..|+
T Consensus 664 ~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~--k~I~ 741 (1176)
T KOG1248|consen 664 NSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIP--KLIP 741 (1176)
T ss_pred ccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHH--HHHH
Confidence 345788999999999999876443322221 12333444444444455666666665555321 23333333 2455
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhccCchhHHHHHhhc------hHHHHHHhc-----CCChHHHHHHHHHHHHHhCChh
Q 004761 573 ALVDLLGSGTLRGRKDAATALFNLSIFHENKARIIQAG------AVKHLVDLM-----DPSTGMVDKAVALLANLSTVGE 641 (732)
Q Consensus 573 ~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~n~~~lv~~G------~V~~Ll~lL-----~~~~~l~e~al~iL~nLa~~~~ 641 (732)
-++-.+++.+...++.|..+|..++. .....+.| .+...+..+ .....++-.-+-.+..+...
T Consensus 742 EvIL~~Ke~n~~aR~~Af~lL~~i~~----i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e-- 815 (1176)
T KOG1248|consen 742 EVILSLKEVNVKARRNAFALLVFIGA----IQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQE-- 815 (1176)
T ss_pred HHHHhcccccHHHHhhHHHHHHHHHH----HHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHH--
Confidence 55555688888899999999998873 01111111 333333333 11111111112222222221
Q ss_pred hHHHHHHc----CcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHH
Q 004761 642 GRLAIARE----GGIPSLVEVVESGSQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLS 717 (732)
Q Consensus 642 ~r~~i~~~----~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~ 717 (732)
...+++. +.+..+..+|.+.+++....|+..+..++..-|+.+-.--.+-+++.+..+++.++-..+.|+.-+|.
T Consensus 816 -~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~Lle 894 (1176)
T KOG1248|consen 816 -FKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLE 894 (1176)
T ss_pred -HhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 1112222 23455555677889999999999999999988876555555568999999999988899999988887
Q ss_pred Hh
Q 004761 718 HF 719 (732)
Q Consensus 718 ~l 719 (732)
.|
T Consensus 895 kL 896 (1176)
T KOG1248|consen 895 KL 896 (1176)
T ss_pred HH
Confidence 66
|
|
| >KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.19 Score=58.19 Aligned_cols=242 Identities=19% Similarity=0.171 Sum_probs=148.1
Q ss_pred chHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCchHHHH
Q 004761 445 PYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAMI 524 (732)
Q Consensus 445 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k~~i 524 (732)
...+.+|+.....+.+.++-.---+.+.++..+.. .-+++..++.=..++++.++.-|++.+..+-.+ .+
T Consensus 49 slF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~-----a~~avnt~~kD~~d~np~iR~lAlrtm~~l~v~-----~i 118 (734)
T KOG1061|consen 49 SLFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDL-----AILAVNTFLKDCEDPNPLIRALALRTMGCLRVD-----KI 118 (734)
T ss_pred hhhHHHHhhcccCCchHHHHHHHHHHHhhccCchH-----HHhhhhhhhccCCCCCHHHHHHHhhceeeEeeh-----HH
Confidence 34567777777777665554444566666665532 125666666666778999999998888655322 11
Q ss_pred HHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhccCchh-H
Q 004761 525 AEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFHEN-K 603 (732)
Q Consensus 525 ~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~n-~ 603 (732)
. .-.+.+|...++++++.+|..++....++- +.+.......|.++.|-+++.+.++.+..+|+.+|..+...+.+ -
T Consensus 119 ~-ey~~~Pl~~~l~d~~~yvRktaa~~vakl~--~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~ 195 (734)
T KOG1061|consen 119 T-EYLCDPLLKCLKDDDPYVRKTAAVCVAKLF--DIDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVN 195 (734)
T ss_pred H-HHHHHHHHHhccCCChhHHHHHHHHHHHhh--cCChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCC
Confidence 1 225788999999999999988888877764 34456666779999999999999999999999999999775543 1
Q ss_pred HHHHhhchHHHHHHhcCCChHHHHHHHHHHHHHhCChh--hHHHHHHcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Q 004761 604 ARIIQAGAVKHLVDLMDPSTGMVDKAVALLANLSTVGE--GRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCLHS 681 (732)
Q Consensus 604 ~~lv~~G~V~~Ll~lL~~~~~l~e~al~iL~nLa~~~~--~r~~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~ 681 (732)
...+..-.+..++..+ +...-..-+.+|.+++.... .+++ ...+..+...+.+.++.+.-.++.+++.+...-
T Consensus 196 ~~~l~~~~~~~lL~al--~ec~EW~qi~IL~~l~~y~p~d~~ea---~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~ 270 (734)
T KOG1061|consen 196 LLELNPQLINKLLEAL--NECTEWGQIFILDCLAEYVPKDSREA---EDICERLTPRLQHANSAVVLSAVKVILQLVKYL 270 (734)
T ss_pred cccccHHHHHHHHHHH--HHhhhhhHHHHHHHHHhcCCCCchhH---HHHHHHhhhhhccCCcceEeehHHHHHHHHHHH
Confidence 1122223334444444 11111223444555544221 1111 113445555566666666667777777766643
Q ss_pred hHhHHHHHhCCCHHHHHHchhcCC
Q 004761 682 PKFCTLVLQEGAVPPLVGLSQSGT 705 (732)
Q Consensus 682 ~~~~~~v~~~G~i~~L~~Ll~~g~ 705 (732)
.. .....-..+-++|+.++....
T Consensus 271 ~~-~~~~~~~K~~~pl~tlls~~~ 293 (734)
T KOG1061|consen 271 KQ-VNELLFKKVAPPLVTLLSSES 293 (734)
T ss_pred HH-HHHHHHHHhcccceeeecccc
Confidence 33 222222335556666665544
|
|
| >KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.45 Score=55.26 Aligned_cols=169 Identities=14% Similarity=0.139 Sum_probs=98.7
Q ss_pred CchHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCchHHH
Q 004761 444 TPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAM 523 (732)
Q Consensus 444 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k~~ 523 (732)
+-....+.+.+++.++.++..|+-+.+.+-..+ .......|.++.|-.++.++++.+..+|+.+|..+.....+...
T Consensus 120 ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~---~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~ 196 (734)
T KOG1061|consen 120 EYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDID---PDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNL 196 (734)
T ss_pred HHHHHHHHHhccCCChhHHHHHHHHHHHhhcCC---hhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCc
Confidence 344577888999999999999988888887554 34556679999999999999999999999999988654332110
Q ss_pred -HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhccCchh
Q 004761 524 -IAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFHEN 602 (732)
Q Consensus 524 -i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~n 602 (732)
......+..++..|..-+.=.+ +.+|-.++.+-.... .-....+..+...|.+.+..+...+.+.+.++......
T Consensus 197 ~~l~~~~~~~lL~al~ec~EW~q---i~IL~~l~~y~p~d~-~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~ 272 (734)
T KOG1061|consen 197 LELNPQLINKLLEALNECTEWGQ---IFILDCLAEYVPKDS-REAEDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQ 272 (734)
T ss_pred ccccHHHHHHHHHHHHHhhhhhH---HHHHHHHHhcCCCCc-hhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHH
Confidence 0011122233333322221122 222333332111101 01113455566666677777777777777776665444
Q ss_pred HHHHHhhchHHHHHHhc
Q 004761 603 KARIIQAGAVKHLVDLM 619 (732)
Q Consensus 603 ~~~lv~~G~V~~Ll~lL 619 (732)
....+-..+-++|+.++
T Consensus 273 ~~~~~~~K~~~pl~tll 289 (734)
T KOG1061|consen 273 VNELLFKKVAPPLVTLL 289 (734)
T ss_pred HHHHHHHHhcccceeee
Confidence 33333334445555555
|
|
| >COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.48 Score=53.51 Aligned_cols=121 Identities=19% Similarity=0.224 Sum_probs=81.5
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHH--hcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCc----hHHH
Q 004761 450 LIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIG--NCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDE----NKAM 523 (732)
Q Consensus 450 Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~--~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~----~k~~ 523 (732)
|-+.|....+++.-..+.+++.+..... .+ .+. -.|.+|.|..+|++...+++.+.+..++.++.... .|+.
T Consensus 651 LyE~lge~ypEvLgsil~Ai~~I~sv~~-~~-~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEW 728 (975)
T COG5181 651 LYENLGEDYPEVLGSILKAICSIYSVHR-FR-SMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREW 728 (975)
T ss_pred HHHhcCcccHHHHHHHHHHHHHHhhhhc-cc-ccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHH
Confidence 4566666777766555555555442211 11 011 14889999999999999999999999999987632 2444
Q ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCC
Q 004761 524 IAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSG 581 (732)
Q Consensus 524 i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~ 581 (732)
|.- -=.|+..|++-+.++|.+|..++..++. .||-..++..|++=|+..
T Consensus 729 MRI---cfeLvd~Lks~nKeiRR~A~~tfG~Is~------aiGPqdvL~~LlnnLkvq 777 (975)
T COG5181 729 MRI---CFELVDSLKSWNKEIRRNATETFGCISR------AIGPQDVLDILLNNLKVQ 777 (975)
T ss_pred HHH---HHHHHHHHHHhhHHHHHhhhhhhhhHHh------hcCHHHHHHHHHhcchHH
Confidence 432 2347788888899999999999988763 445455556666655543
|
|
| >PF11841 DUF3361: Domain of unknown function (DUF3361) | Back alignment and domain information |
|---|
Probab=94.73 E-value=0.43 Score=45.48 Aligned_cols=117 Identities=19% Similarity=0.236 Sum_probs=91.8
Q ss_pred HHHHhhchHHHHHHhc-CCC------hHHHHHHHHHHHHHhCChhhHHHHHHcCcHHHHHHHHhcC--CHHHHHHHHHHH
Q 004761 604 ARIIQAGAVKHLVDLM-DPS------TGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVESG--SQRGKENAASIL 674 (732)
Q Consensus 604 ~~lv~~G~V~~Ll~lL-~~~------~~l~e~al~iL~nLa~~~~~r~~i~~~~~I~~Lv~lL~~~--s~~~~e~A~~~L 674 (732)
..+++.|++..|++++ +.. ..+...++.++..|..+.-.-=.......|..++.++... +......|.++|
T Consensus 5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaIL 84 (160)
T PF11841_consen 5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAIL 84 (160)
T ss_pred HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHH
Confidence 4678899999999999 332 4566778888888877643222344455788888888653 477889999999
Q ss_pred HHHhcCChHhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHhh
Q 004761 675 LQLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFR 720 (732)
Q Consensus 675 ~~L~~~~~~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~ 720 (732)
-++..+++..-..+.++=-++.|+..++.+++..+.+|..++..|-
T Consensus 85 Es~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~ 130 (160)
T PF11841_consen 85 ESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALF 130 (160)
T ss_pred HHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 9999988887788888777999999999999999999999887663
|
|
| >PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B | Back alignment and domain information |
|---|
Probab=94.73 E-value=0.063 Score=41.45 Aligned_cols=55 Identities=20% Similarity=0.093 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHh
Q 004761 501 QLTQEHAVTALLNLSINDENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSL 555 (732)
Q Consensus 501 ~~v~~~A~~~L~nLs~~~~~k~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~L 555 (732)
+.++..|+++|.+++........-.....++.|+.+|++.+..+|.+|+++|.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 4678999999999876655444445567899999999998899999999999865
|
... |
| >COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=94.66 E-value=1.2 Score=52.54 Aligned_cols=92 Identities=17% Similarity=0.170 Sum_probs=45.6
Q ss_pred hccCCHHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHH
Q 004761 496 LYSEAQLTQEHAVTALLNLSINDENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALV 575 (732)
Q Consensus 496 L~s~~~~v~~~A~~~L~nLs~~~~~k~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv 575 (732)
+.++|+.++..|++++..+-. ..+. ...++++.+.+.++++.+|.+|+-+++++-. -.+..+.+.|.+..+.
T Consensus 101 l~d~N~~iR~~AlR~ls~l~~-----~el~-~~~~~~ik~~l~d~~ayVRk~Aalav~kly~--ld~~l~~~~g~~~~l~ 172 (757)
T COG5096 101 LQDPNEEIRGFALRTLSLLRV-----KELL-GNIIDPIKKLLTDPHAYVRKTAALAVAKLYR--LDKDLYHELGLIDILK 172 (757)
T ss_pred ccCCCHHHHHHHHHHHHhcCh-----HHHH-HHHHHHHHHHccCCcHHHHHHHHHHHHHHHh--cCHhhhhcccHHHHHH
Confidence 344555555555555543321 1111 1235555555555555555555555555432 1234444445555555
Q ss_pred HhhcCCCHHHHHHHHHHHHH
Q 004761 576 DLLGSGTLRGRKDAATALFN 595 (732)
Q Consensus 576 ~lL~~~~~~~~~~Al~aL~n 595 (732)
.++.+.+|.++.+|+.+|..
T Consensus 173 ~l~~D~dP~Vi~nAl~sl~~ 192 (757)
T COG5096 173 ELVADSDPIVIANALASLAE 192 (757)
T ss_pred HHhhCCCchHHHHHHHHHHH
Confidence 55555555555555555544
|
|
| >PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] | Back alignment and domain information |
|---|
Probab=94.66 E-value=1.9 Score=46.27 Aligned_cols=181 Identities=19% Similarity=0.145 Sum_probs=95.4
Q ss_pred cCCCHHHHHHHHHHHHHhccCchhHHHHHhc--chHHHHHHhhcCCCHHHHHHHHHHHHHhccC--c-hhHHHHHhhchH
Q 004761 538 KSGNGGAKENSAAALFSLSVLEEYKAKIGRS--GAVKALVDLLGSGTLRGRKDAATALFNLSIF--H-ENKARIIQAGAV 612 (732)
Q Consensus 538 ~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~--g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~--~-~n~~~lv~~G~V 612 (732)
.......|+.++..|..+....-....+... -.+..+...++.+..+-+..|+.++.-++.. . .....++ ..+.
T Consensus 53 ~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~-~~~~ 131 (309)
T PF05004_consen 53 TEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIF-EELK 131 (309)
T ss_pred HhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHH-HHHH
Confidence 3334555666666655554332222233221 3567788888888776677787777777664 2 3333333 3677
Q ss_pred HHHHHhc-CCC--hHHHHHHHHHHHHHhC---Ch-hhHHHHHHcCcHHHHHH--HHhc-C---------CHHHHHHHHHH
Q 004761 613 KHLVDLM-DPS--TGMVDKAVALLANLST---VG-EGRLAIAREGGIPSLVE--VVES-G---------SQRGKENAASI 673 (732)
Q Consensus 613 ~~Ll~lL-~~~--~~l~e~al~iL~nLa~---~~-~~r~~i~~~~~I~~Lv~--lL~~-~---------s~~~~e~A~~~ 673 (732)
|.|...+ +.. ...+..++.+|+.++. .. +......+ .+..+.. +.+. + ++...-.|+..
T Consensus 132 ~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~--~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~a 209 (309)
T PF05004_consen 132 PVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME--SLESIFLLSILKSDGNAPVVAAEDDAALVAAALSA 209 (309)
T ss_pred HHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH--HHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHH
Confidence 8888888 433 2333455555555433 21 11111111 1221111 1221 1 12334444333
Q ss_pred HHHHhcC-ChHhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHhhcc
Q 004761 674 LLQLCLH-SPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFRNQ 722 (732)
Q Consensus 674 L~~L~~~-~~~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~~ 722 (732)
-.-|... ++......+ ...++.|..++++.+..+|..|.+.|.+|-+.
T Consensus 210 W~lLlt~~~~~~~~~~~-~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~ 258 (309)
T PF05004_consen 210 WALLLTTLPDSKLEDLL-EEALPALSELLDSDDVDVRIAAGEAIALLYEL 258 (309)
T ss_pred HHHHHhcCCHHHHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 2222222 222223333 34599999999999999999999999888543
|
The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis []. |
| >COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=94.65 E-value=3.6 Score=46.48 Aligned_cols=270 Identities=11% Similarity=0.095 Sum_probs=161.8
Q ss_pred cccCchHHHHHHHhcCCCH-HHHHHHHHHHHHHhccChhhHHHHHhcCCHH-HH-HHhhcc-CCHHHHHHHHHHHHH-hh
Q 004761 441 VTTTPYVKKLIEDLNSTSN-EIQASAAAELRLLAKHNMENRMIIGNCGAIP-PL-LSLLYS-EAQLTQEHAVTALLN-LS 515 (732)
Q Consensus 441 ~~~~~~i~~Lv~~L~s~~~-~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~-~L-v~lL~s-~~~~v~~~A~~~L~n-Ls 515 (732)
..|.++...+++....+.+ ..+..++..+...+... .-...+...+.|- .+ ...++. .+..++..|+.+|.+ |-
T Consensus 129 ~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~-~Pe~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~ 207 (858)
T COG5215 129 SLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESE-APEDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLM 207 (858)
T ss_pred ccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhcc-CHHHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHH
Confidence 4567778888888776554 46678888888887432 2234444444332 22 334443 467788899999987 32
Q ss_pred cC------CchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhcc-CchhHHHHHhcchHHHHHHhhcCCCHHHHHH
Q 004761 516 IN------DENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSV-LEEYKAKIGRSGAVKALVDLLGSGTLRGRKD 588 (732)
Q Consensus 516 ~~------~~~k~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~-~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~ 588 (732)
.. +.++..+ +...++.-+..+.+++..|.++|..+-. +-..-..+++..........+++.+.++...
T Consensus 208 fv~~nf~~E~erNy~-----mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~nd~va~q 282 (858)
T COG5215 208 FVQGNFCYEEERNYF-----MQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQ 282 (858)
T ss_pred HHHHhhcchhhhchh-----heeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHH
Confidence 21 2223332 2233344455667888888888877643 2222334444444455566778888888777
Q ss_pred HHHHHHHhccCc---------------hhH--HHHHhhchHHHHHHhc-C--C-----ChHHHHH---HHHHHHHHhCCh
Q 004761 589 AATALFNLSIFH---------------ENK--ARIIQAGAVKHLVDLM-D--P-----STGMVDK---AVALLANLSTVG 640 (732)
Q Consensus 589 Al~aL~nLs~~~---------------~n~--~~lv~~G~V~~Ll~lL-~--~-----~~~l~e~---al~iL~nLa~~~ 640 (732)
|+.....+|... .|. .+..-++++|.|+.+| . + +-+.... |+...+.++..
T Consensus 283 avEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd- 361 (858)
T COG5215 283 AVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGD- 361 (858)
T ss_pred HHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhh-
Confidence 776665555421 111 1222356899999999 2 1 1123333 33444444332
Q ss_pred hhHHHHHHcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHhh
Q 004761 641 EGRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFR 720 (732)
Q Consensus 641 ~~r~~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~ 720 (732)
.|.+. .+..+-+-+++.+-..+|.|+.++..+..+..+.+..-+-..++|.+..++...+--+|..+++++..+.
T Consensus 362 ----~i~~p-Vl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~ia 436 (858)
T COG5215 362 ----KIMRP-VLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIA 436 (858)
T ss_pred ----HhHHH-HHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHH
Confidence 22221 2222333467778889999999999988864444444444567899999888777788999999888776
Q ss_pred cc
Q 004761 721 NQ 722 (732)
Q Consensus 721 ~~ 722 (732)
++
T Consensus 437 d~ 438 (858)
T COG5215 437 DH 438 (858)
T ss_pred HH
Confidence 54
|
|
| >KOG4367 consensus Predicted Zn-finger protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.60 E-value=0.012 Score=62.55 Aligned_cols=34 Identities=15% Similarity=0.397 Sum_probs=30.1
Q ss_pred CCccccccCcccCCCceecCCCcccchHHHHHHH
Q 004761 237 PPYFRCPLSLELMIDPVIVASGQTYERVFIQKWL 270 (732)
Q Consensus 237 p~~f~Cpi~~~lm~dPV~~~~g~ty~r~~I~~~~ 270 (732)
.+++.||||...|+||+|++|||+.||.|-..-+
T Consensus 2 eeelkc~vc~~f~~epiil~c~h~lc~~ca~~~~ 35 (699)
T KOG4367|consen 2 EEELKCPVCGSFYREPIILPCSHNLCQACARNIL 35 (699)
T ss_pred cccccCceehhhccCceEeecccHHHHHHHHhhc
Confidence 3689999999999999999999999999966443
|
|
| >PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.26 Score=48.82 Aligned_cols=118 Identities=15% Similarity=0.133 Sum_probs=86.3
Q ss_pred CHHHHHHHHHHHHHhhcCCchHHHHHH----------------cCCHHHHHHHHcCC------CHHHHHHHHHHHHHhcc
Q 004761 500 AQLTQEHAVTALLNLSINDENKAMIAE----------------AGAIEPLIHVLKSG------NGGAKENSAAALFSLSV 557 (732)
Q Consensus 500 ~~~v~~~A~~~L~nLs~~~~~k~~i~~----------------~g~l~~Lv~lL~~~------~~e~~~~Aa~~L~~Ls~ 557 (732)
+......++.+|.||+..+.....+.. ..++..|+..+..| ...-..+.+.++.|++.
T Consensus 8 ~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~ 87 (192)
T PF04063_consen 8 KSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQ 87 (192)
T ss_pred CcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcC
Confidence 344566777888888877665553332 23577788777662 23456789999999999
Q ss_pred CchhHHHHHhc--ch--HHHHHHhhcCCCHHHHHHHHHHHHHhccCchhHHHHHhh---chHHHHHH
Q 004761 558 LEEYKAKIGRS--GA--VKALVDLLGSGTLRGRKDAATALFNLSIFHENKARIIQA---GAVKHLVD 617 (732)
Q Consensus 558 ~~~~k~~i~~~--g~--i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~n~~~lv~~---G~V~~Ll~ 617 (732)
.++.|..+... +. +..|+.++.+.+.--+.-++.+|.|+|...+....+... +++|.|+-
T Consensus 88 ~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLl 154 (192)
T PF04063_consen 88 LPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLL 154 (192)
T ss_pred CHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHh
Confidence 99999998865 44 788888888887777888999999999999888887774 34444433
|
It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO). |
| >KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.69 Score=53.36 Aligned_cols=224 Identities=11% Similarity=0.089 Sum_probs=127.6
Q ss_pred HHHHhhccCCHHHHHHHHHHHHHhhcCCchH---HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCch-hHHHHH
Q 004761 491 PLLSLLYSEAQLTQEHAVTALLNLSINDENK---AMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEE-YKAKIG 566 (732)
Q Consensus 491 ~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k---~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~-~k~~i~ 566 (732)
.++..|++..+.++++|+.++..++..-.++ ..+...|. .|.+.|....+|+.-..+.+|..+...-. .+..=-
T Consensus 803 tiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGv--vLyEylgeeypEvLgsILgAikaI~nvigm~km~pP 880 (1172)
T KOG0213|consen 803 TILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGV--VLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPP 880 (1172)
T ss_pred HHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhH--HHHHhcCcccHHHHHHHHHHHHHHHHhccccccCCC
Confidence 3455677888999999999988886532222 22223332 25577887888888777777766643221 111111
Q ss_pred hcchHHHHHHhhcCCCHHHHHHHHHHHHHhccCch----hHHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCC--
Q 004761 567 RSGAVKALVDLLGSGTLRGRKDAATALFNLSIFHE----NKARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTV-- 639 (732)
Q Consensus 567 ~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~----n~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~-- 639 (732)
..+.+|.|..+|++.+..++++++..+..++.... .|+.|. +--.|+++| ..+..+...|...++.++.-
T Consensus 881 i~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMR---IcfeLlelLkahkK~iRRaa~nTfG~IakaIG 957 (1172)
T KOG0213|consen 881 IKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMR---ICFELLELLKAHKKEIRRAAVNTFGYIAKAIG 957 (1172)
T ss_pred hhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhhHHHHhcC
Confidence 24789999999999999999999999999987543 455443 223455666 44556666665555544331
Q ss_pred h--------------h--h-------HHHHHHcCc----HHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHhHHHHHhCC
Q 004761 640 G--------------E--G-------RLAIAREGG----IPSLVEVVESGSQRGKENAASILLQLCLHSPKFCTLVLQEG 692 (732)
Q Consensus 640 ~--------------~--~-------r~~i~~~~~----I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~v~~~G 692 (732)
| + . -..+.+..+ +|.|+.--+.+...++...+.+|..+...-.+....-+ .-
T Consensus 958 PqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalmneYrtPe~nVQnGVLkalsf~FeyigemskdYi-ya 1036 (1172)
T KOG0213|consen 958 PQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPALMNEYRTPEANVQNGVLKALSFMFEYIGEMSKDYI-YA 1036 (1172)
T ss_pred HHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhhHHHHhhccCchhHHHHhHHHHHHHHHHHHHHHhhhHH-HH
Confidence 0 0 0 111123322 33333333445555665555555554442111111111 12
Q ss_pred CHHHHHHchhcCChHHHHHHHHHHHHhh
Q 004761 693 AVPPLVGLSQSGTPRAKEKAQQLLSHFR 720 (732)
Q Consensus 693 ~i~~L~~Ll~~g~~~~k~kA~~lL~~l~ 720 (732)
+.|.|-..+...+.--+.-|..+++++.
T Consensus 1037 v~PlleDAlmDrD~vhRqta~~~I~Hl~ 1064 (1172)
T KOG0213|consen 1037 VTPLLEDALMDRDLVHRQTAMNVIKHLA 1064 (1172)
T ss_pred hhHHHHHhhccccHHHHHHHHHHHHHHh
Confidence 4555555665666666666777777664
|
|
| >KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.54 E-value=0.7 Score=51.69 Aligned_cols=153 Identities=19% Similarity=0.209 Sum_probs=112.2
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCCCH----HHHHHHHHHHHHhccCchhHHH
Q 004761 530 IEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTL----RGRKDAATALFNLSIFHENKAR 605 (732)
Q Consensus 530 l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~----~~~~~Al~aL~nLs~~~~n~~~ 605 (732)
...+.+++.+|+...+..|...|.+++........+....++..|..++.+++. ......++++..|-.+.-.-..
T Consensus 85 a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW~ 164 (713)
T KOG2999|consen 85 AKRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSWE 164 (713)
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeeee
Confidence 445677888999999989999999999988877777777888999999988753 4555666666665443322223
Q ss_pred HHhhchHHHHHHhc---CCChHHHHHHHHHHHHHhCChh-hHHHHHHcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Q 004761 606 IIQAGAVKHLVDLM---DPSTGMVDKAVALLANLSTVGE-GRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCLHS 681 (732)
Q Consensus 606 lv~~G~V~~Ll~lL---~~~~~l~e~al~iL~nLa~~~~-~r~~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~ 681 (732)
.+...+|.....+. ..+..+...|+++|.++..+.. -+..+.+.--+..|+..++.++.....+|.+.+-++....
T Consensus 165 ~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~~~a 244 (713)
T KOG2999|consen 165 SVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALFRKA 244 (713)
T ss_pred ecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHHhhC
Confidence 33333444444444 3355677889999999987766 4566666777999999999988888888999988887754
Q ss_pred h
Q 004761 682 P 682 (732)
Q Consensus 682 ~ 682 (732)
+
T Consensus 245 ~ 245 (713)
T KOG2999|consen 245 P 245 (713)
T ss_pred C
Confidence 3
|
|
| >KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.43 E-value=0.016 Score=60.18 Aligned_cols=49 Identities=22% Similarity=0.398 Sum_probs=42.1
Q ss_pred CCccccccCcccCCCceecC-CCcccchHHHHHHHhcCCCCCCCCCCCCCC
Q 004761 237 PPYFRCPLSLELMIDPVIVA-SGQTYERVFIQKWLDHGLNICPKTRQTLAH 286 (732)
Q Consensus 237 p~~f~Cpi~~~lm~dPV~~~-~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~ 286 (732)
|+.=.||+|+.--.+|-++. +|..||-.||-.+..+ +..||+|+.|..-
T Consensus 298 ~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~-~~~CPVT~~p~~v 347 (357)
T KOG0826|consen 298 PDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVN-YGHCPVTGYPASV 347 (357)
T ss_pred CccccChhHHhccCCCceEEecceEEeHHHHHHHHHh-cCCCCccCCcchH
Confidence 45678999999999998875 6999999999999984 4789999988654
|
|
| >PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane | Back alignment and domain information |
|---|
Probab=94.40 E-value=0.095 Score=47.41 Aligned_cols=71 Identities=27% Similarity=0.307 Sum_probs=59.1
Q ss_pred chHHHHHHHhc-CCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhh
Q 004761 445 PYVKKLIEDLN-STSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLS 515 (732)
Q Consensus 445 ~~i~~Lv~~L~-s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs 515 (732)
..+..|++.|. +.++....-|+.-|..+++..|..|..+.+.|+-..++.++.++|++++.+|+.++..+-
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 45788999994 445666677899999999999999999988999999999999999999999999997653
|
ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A. |
| >COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.32 E-value=1 Score=50.96 Aligned_cols=150 Identities=17% Similarity=0.120 Sum_probs=100.0
Q ss_pred CchHHHHHHHhcCCCHHHHHHHHHHHHHHhccChh--hHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCchH
Q 004761 444 TPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNME--NRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENK 521 (732)
Q Consensus 444 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~--~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k 521 (732)
...|..++..|++..+.++..|+.....+++--.. -...+...|. .|..-|...++++.-..+.++..+...-..+
T Consensus 603 ~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~--iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~ 680 (975)
T COG5181 603 SMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGN--ILYENLGEDYPEVLGSILKAICSIYSVHRFR 680 (975)
T ss_pred HHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhH--HHHHhcCcccHHHHHHHHHHHHHHhhhhccc
Confidence 34677888999999999999999988888743110 0122333332 3455566678888766666665443211111
Q ss_pred -HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCch----hHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 004761 522 -AMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEE----YKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNL 596 (732)
Q Consensus 522 -~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~----~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nL 596 (732)
.+--..|.+|.|..+|++....+..+..+.+..++.... .|+.+. +--.|+++|++.+.+.+++|...+..+
T Consensus 681 ~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMR---IcfeLvd~Lks~nKeiRR~A~~tfG~I 757 (975)
T COG5181 681 SMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMR---ICFELVDSLKSWNKEIRRNATETFGCI 757 (975)
T ss_pred ccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHH---HHHHHHHHHHHhhHHHHHhhhhhhhhH
Confidence 111135789999999999988899998888888775432 234433 345678888888899999998888777
Q ss_pred cc
Q 004761 597 SI 598 (732)
Q Consensus 597 s~ 598 (732)
+.
T Consensus 758 s~ 759 (975)
T COG5181 758 SR 759 (975)
T ss_pred Hh
Confidence 54
|
|
| >COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=94.31 E-value=0.88 Score=53.76 Aligned_cols=99 Identities=23% Similarity=0.264 Sum_probs=71.7
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCchHHHHHHcCC
Q 004761 450 LIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAMIAEAGA 529 (732)
Q Consensus 450 Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k~~i~~~g~ 529 (732)
+.+.+.++|+.+|-.|++.+..+--. . +. ..+++++.+++.++++.++..|+-++.++- .-.+....+.|.
T Consensus 97 i~kDl~d~N~~iR~~AlR~ls~l~~~-----e-l~-~~~~~~ik~~l~d~~ayVRk~Aalav~kly--~ld~~l~~~~g~ 167 (757)
T COG5096 97 IQKDLQDPNEEIRGFALRTLSLLRVK-----E-LL-GNIIDPIKKLLTDPHAYVRKTAALAVAKLY--RLDKDLYHELGL 167 (757)
T ss_pred HHhhccCCCHHHHHHHHHHHHhcChH-----H-HH-HHHHHHHHHHccCCcHHHHHHHHHHHHHHH--hcCHhhhhcccH
Confidence 34444555555555555555443211 1 11 136778888999999999999999998875 234677778899
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhcc
Q 004761 530 IEPLIHVLKSGNGGAKENSAAALFSLSV 557 (732)
Q Consensus 530 l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~ 557 (732)
+..+..++.+.++.+..+|..+|..+-.
T Consensus 168 ~~~l~~l~~D~dP~Vi~nAl~sl~~i~~ 195 (757)
T COG5096 168 IDILKELVADSDPIVIANALASLAEIDP 195 (757)
T ss_pred HHHHHHHhhCCCchHHHHHHHHHHHhch
Confidence 9999999999999999999999988753
|
|
| >PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
Probab=94.28 E-value=0.044 Score=41.67 Aligned_cols=45 Identities=20% Similarity=0.286 Sum_probs=25.4
Q ss_pred ccccccCcccCCCcee-cCCCcc--cchHHHHHH-HhcCCCCCCCCCCC
Q 004761 239 YFRCPLSLELMIDPVI-VASGQT--YERVFIQKW-LDHGLNICPKTRQT 283 (732)
Q Consensus 239 ~f~Cpi~~~lm~dPV~-~~~g~t--y~r~~I~~~-~~~~~~~cP~~~~~ 283 (732)
.+.||||...|+-||- ..|.|. ||-...-.. ...+...||.|+++
T Consensus 2 sL~CPls~~~i~~P~Rg~~C~H~~CFDl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 2 SLRCPLSFQRIRIPVRGKNCKHLQCFDLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp ESB-TTTSSB-SSEEEETT--SS--EEHHHHHHHHHHS---B-TTT---
T ss_pred eeeCCCCCCEEEeCccCCcCcccceECHHHHHHHhhccCCeECcCCcCc
Confidence 3689999999999997 468775 887554444 34555789999874
|
Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A. |
| >COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=94.17 E-value=3.6 Score=43.28 Aligned_cols=220 Identities=16% Similarity=0.072 Sum_probs=138.2
Q ss_pred CHHHHHHHHHHHHHHhccChhhHHHHH-hcCCHHHHHHhhcc--CCHHHHHHHHHHHHHhhcCCchHHHHHH-cCCHHHH
Q 004761 458 SNEIQASAAAELRLLAKHNMENRMIIG-NCGAIPPLLSLLYS--EAQLTQEHAVTALLNLSINDENKAMIAE-AGAIEPL 533 (732)
Q Consensus 458 ~~~~~~~Al~~L~~La~~~~~~r~~i~-~~G~I~~Lv~lL~s--~~~~v~~~A~~~L~nLs~~~~~k~~i~~-~g~l~~L 533 (732)
++-.+.-|+.++.++... ++.|..+- +...-..++.++++ ++..+|.+.+-+++-|+.++...+.+-. .+.+..|
T Consensus 162 ~~lTrlfav~cl~~l~~~-~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~dli~dl 240 (432)
T COG5231 162 DFLTRLFAVSCLSNLEFD-VEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDDLINDL 240 (432)
T ss_pred HHHHHHHHHHHHhhhhhh-HHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 344567788888888854 45555443 44455677787765 4678999999999999988766533332 2457777
Q ss_pred HHHHcCCC-HHHHHHHHHHHHHhccCchhHHHH---HhcchHHHHHHhhcCC---CHHHH---------------HHHHH
Q 004761 534 IHVLKSGN-GGAKENSAAALFSLSVLEEYKAKI---GRSGAVKALVDLLGSG---TLRGR---------------KDAAT 591 (732)
Q Consensus 534 v~lL~~~~-~e~~~~Aa~~L~~Ls~~~~~k~~i---~~~g~i~~Lv~lL~~~---~~~~~---------------~~Al~ 591 (732)
+++.+... ..+...+++++.+++. ...|..| ...|-+.+-+++|..+ +.+.+ +.+..
T Consensus 241 i~iVk~~~keKV~Rlc~~Iv~n~~d-K~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~~f 319 (432)
T COG5231 241 IAIVKERAKEKVLRLCCGIVANVLD-KSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLCIF 319 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc-ccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 78777543 4455677788888775 2223333 3345455556665432 22221 11111
Q ss_pred --HHHHh-------ccC-------chhHHHHHh--hchHHHHHHhc-CCChH-HHHHHHHHHHHH-hCChhhHHHHHHcC
Q 004761 592 --ALFNL-------SIF-------HENKARIIQ--AGAVKHLVDLM-DPSTG-MVDKAVALLANL-STVGEGRLAIAREG 650 (732)
Q Consensus 592 --aL~nL-------s~~-------~~n~~~lv~--~G~V~~Ll~lL-~~~~~-l~e~al~iL~nL-a~~~~~r~~i~~~~ 650 (732)
-+..| +.+ +.|...+.+ ..++..|.+++ ...++ ...-|+.=+..+ -..|+++..+...|
T Consensus 320 D~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Kyg 399 (432)
T COG5231 320 DNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKYG 399 (432)
T ss_pred HHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHhh
Confidence 01111 111 135556665 45888899998 33333 333344444444 45789999999999
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Q 004761 651 GIPSLVEVVESGSQRGKENAASILLQLCL 679 (732)
Q Consensus 651 ~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~ 679 (732)
+=..++.++.+++++++-+|+.++..+..
T Consensus 400 ~k~~im~L~nh~d~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 400 VKEIIMNLINHDDDDVKFEALQALQTCIS 428 (432)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHHHHh
Confidence 99999999999999999999999876543
|
|
| >KOG3113 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.05 E-value=0.038 Score=55.26 Aligned_cols=51 Identities=14% Similarity=0.268 Sum_probs=42.5
Q ss_pred CccccccCcccCCCce----ecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCcc
Q 004761 238 PYFRCPLSLELMIDPV----IVASGQTYERVFIQKWLDHGLNICPKTRQTLAHTNLIP 291 (732)
Q Consensus 238 ~~f~Cpi~~~lm~dPV----~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~p 291 (732)
..|+|||++-.|.+-. +.+|||.|.-.++++.- ..+||+|++++..++.++
T Consensus 110 a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeik---as~C~~C~a~y~~~dvIv 164 (293)
T KOG3113|consen 110 ARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIK---ASVCHVCGAAYQEDDVIV 164 (293)
T ss_pred ceeecccccceecceEEEEEEeccceeccHHHHHHhh---hccccccCCcccccCeEe
Confidence 6799999999999975 45899999998887665 358999999999876543
|
|
| >KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.02 E-value=1.4 Score=50.81 Aligned_cols=209 Identities=14% Similarity=0.155 Sum_probs=118.2
Q ss_pred HHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcC-CchHHHHHHcCCH
Q 004761 452 EDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSIN-DENKAMIAEAGAI 530 (732)
Q Consensus 452 ~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~-~~~k~~i~~~g~l 530 (732)
..+++.+....--|+..|..+...+ -.| +.-+-++.+|++.-+-++..|+.+|..+..- ++. +. .++
T Consensus 116 kdl~S~n~ye~giAL~GLS~fvTpd-LAR------DLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeA---lr--~~F 183 (877)
T KOG1059|consen 116 KDLNSSNVYEVGLALSGLSCIVTPD-LAR------DLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEA---LR--PCF 183 (877)
T ss_pred HHhccCccchhhheecccccccCch-hhH------HHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHh---Hh--hhH
Confidence 3455666555555666555444332 222 3445688999999999999999999888642 222 11 368
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhcc-CchhHHHHHhcchHHHHHHhhcCC-CHHHHHHHHHHHHHhccCchhHHHHHh
Q 004761 531 EPLIHVLKSGNGGAKENSAAALFSLSV-LEEYKAKIGRSGAVKALVDLLGSG-TLRGRKDAATALFNLSIFHENKARIIQ 608 (732)
Q Consensus 531 ~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~-~~~~k~~i~~~g~i~~Lv~lL~~~-~~~~~~~Al~aL~nLs~~~~n~~~lv~ 608 (732)
+.|.+-|.++++.++-.|..+++.|+. ++.|.-. .-|.+.++|.+. +.=....-++...+|+...+- ..
T Consensus 184 prL~EkLeDpDp~V~SAAV~VICELArKnPknyL~-----LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPR----Lg 254 (877)
T KOG1059|consen 184 PRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQ-----LAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPR----LG 254 (877)
T ss_pred HHHHHhccCCCchHHHHHHHHHHHHHhhCCccccc-----ccHHHHHHHhccCCCeehHHHHHHHhhccccCch----hh
Confidence 999999999999999999999999987 3333222 236777777643 222344456666677665431 11
Q ss_pred hchHHHHHHhc-CC-ChHHHHHHHHHHH--HHhC-ChhhHHHHHHcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChH
Q 004761 609 AGAVKHLVDLM-DP-STGMVDKAVALLA--NLST-VGEGRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCLHSPK 683 (732)
Q Consensus 609 ~G~V~~Ll~lL-~~-~~~l~e~al~iL~--nLa~-~~~~r~~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~ 683 (732)
...+++|.+++ +. ...+.-.|+.++- ++.. .++.- +-+. -++..|-.++...++..+.-++-++.-+....|.
T Consensus 255 KKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~-asiq-LCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~ 332 (877)
T KOG1059|consen 255 KKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHS-ASIQ-LCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPK 332 (877)
T ss_pred hhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcH-HHHH-HHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHH
Confidence 23556666666 21 1223333333222 1211 11111 1111 1244444445555566666666666555554443
|
|
| >KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.90 E-value=0.039 Score=59.05 Aligned_cols=43 Identities=23% Similarity=0.482 Sum_probs=38.2
Q ss_pred ccccccCcccCCC---ceecCCCcccchHHHHHHHhcCC--CCCCCCC
Q 004761 239 YFRCPLSLELMID---PVIVASGQTYERVFIQKWLDHGL--NICPKTR 281 (732)
Q Consensus 239 ~f~Cpi~~~lm~d---PV~~~~g~ty~r~~I~~~~~~~~--~~cP~~~ 281 (732)
-|.|||..+--.| |+.+.|||..+|.+|-+-...|. ..||.|-
T Consensus 334 vF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP 381 (394)
T KOG2817|consen 334 VFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCP 381 (394)
T ss_pred eeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCC
Confidence 4799999998876 89999999999999999999886 5799984
|
|
| >KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.82 E-value=0.95 Score=52.26 Aligned_cols=124 Identities=15% Similarity=0.167 Sum_probs=80.1
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCC-c---hHHHH
Q 004761 449 KLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSIND-E---NKAMI 524 (732)
Q Consensus 449 ~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~-~---~k~~i 524 (732)
.|-+.|....+++.-..+.+|+.+...-.-.+..=--.|.+|.|..+|++...+++++++..++.++... + .|+.|
T Consensus 845 vLyEylgeeypEvLgsILgAikaI~nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWM 924 (1172)
T KOG0213|consen 845 VLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWM 924 (1172)
T ss_pred HHHHhcCcccHHHHHHHHHHHHHHHHhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHH
Confidence 3557777777776544444444333111000000001378999999999999999999999999998652 2 35544
Q ss_pred HHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCC
Q 004761 525 AEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSG 581 (732)
Q Consensus 525 ~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~ 581 (732)
.- .=.|+.+|+....++|.+|..++..++. .||-..++..|++=|+..
T Consensus 925 RI---cfeLlelLkahkK~iRRaa~nTfG~Iak------aIGPqdVLatLlnnLkvq 972 (1172)
T KOG0213|consen 925 RI---CFELLELLKAHKKEIRRAAVNTFGYIAK------AIGPQDVLATLLNNLKVQ 972 (1172)
T ss_pred HH---HHHHHHHHHHHHHHHHHHHHhhhhHHHH------hcCHHHHHHHHHhcchHH
Confidence 32 2346788888889999999999988763 455555556666555543
|
|
| >KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.66 E-value=6.2 Score=45.71 Aligned_cols=242 Identities=12% Similarity=0.109 Sum_probs=136.8
Q ss_pred HHhcCCC--HHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcC-Cc-hHHHHHHc
Q 004761 452 EDLNSTS--NEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSIN-DE-NKAMIAEA 527 (732)
Q Consensus 452 ~~L~s~~--~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~-~~-~k~~i~~~ 527 (732)
+.|.+++ +-++..|+-+|-.|-+.+++ .+-..+.+..++.+|...+-.+...+...+.-|+.. ++ .+..+.-
T Consensus 153 KlLvS~~~~~~vkqkaALclL~L~r~spD---l~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~- 228 (938)
T KOG1077|consen 153 KLLVSGSSMDYVKQKAALCLLRLFRKSPD---LVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPL- 228 (938)
T ss_pred HHHhCCcchHHHHHHHHHHHHHHHhcCcc---ccChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHHH-
Confidence 4444443 34455555555555555543 222346788999999888877777777777666653 22 2332221
Q ss_pred CCHHHHHHHHcC-------------CCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCC----C---HHHHH
Q 004761 528 GAIEPLIHVLKS-------------GNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSG----T---LRGRK 587 (732)
Q Consensus 528 g~l~~Lv~lL~~-------------~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~----~---~~~~~ 587 (732)
++..|..+... +.+=.....+.+|.++-..++.-....-..+++.++...+.. + ..++.
T Consensus 229 -avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~n 307 (938)
T KOG1077|consen 229 -AVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKN 307 (938)
T ss_pred -HHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHhccccCccccchHhhhhHH
Confidence 12222222211 123355667777766643333322222223555555555421 1 11222
Q ss_pred HHHHHHHHhccCc-hhHHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCChhhHHHHHHcCcHHHHHHHHhc-CCH
Q 004761 588 DAATALFNLSIFH-ENKARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVES-GSQ 664 (732)
Q Consensus 588 ~Al~aL~nLs~~~-~n~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~~r~~i~~~~~I~~Lv~lL~~-~s~ 664 (732)
+.+.-.-+|..+- .....+. .++..|-.+| +.+.+++-.|+..++.||++.....++..+ ...++..|+. .+-
T Consensus 308 aVLFeaI~l~~h~D~e~~ll~--~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h--~d~Ii~sLkterDv 383 (938)
T KOG1077|consen 308 AVLFEAISLAIHLDSEPELLS--RAVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKH--QDTIINSLKTERDV 383 (938)
T ss_pred HHHHHHHHHHHHcCCcHHHHH--HHHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHH--HHHHHHHhccccch
Confidence 2333333444432 2333333 3677788888 667788888999999999887777777665 7788888873 567
Q ss_pred HHHHHHHHHHHHHhcCChHhHHHHHhCCCHHHHHHchhcCChHHH
Q 004761 665 RGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAK 709 (732)
Q Consensus 665 ~~~e~A~~~L~~L~~~~~~~~~~v~~~G~i~~L~~Ll~~g~~~~k 709 (732)
..+..|+..|+.+|.. ++.+.+++ -|++.+.+-+...|
T Consensus 384 SirrravDLLY~mcD~--~Nak~IV~-----elLqYL~tAd~sir 421 (938)
T KOG1077|consen 384 SIRRRAVDLLYAMCDV--SNAKQIVA-----ELLQYLETADYSIR 421 (938)
T ss_pred HHHHHHHHHHHHHhch--hhHHHHHH-----HHHHHHhhcchHHH
Confidence 7899999999999983 34454433 24444444444443
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.62 E-value=0.038 Score=59.02 Aligned_cols=62 Identities=19% Similarity=0.426 Sum_probs=50.3
Q ss_pred ccccccCcccCCCce-----ecCCCcccchHHHHHHHhcC-CCCCCCCCCCCCCCCCcccHHHHHHHH
Q 004761 239 YFRCPLSLELMIDPV-----IVASGQTYERVFIQKWLDHG-LNICPKTRQTLAHTNLIPNYTVKAMIE 300 (732)
Q Consensus 239 ~f~Cpi~~~lm~dPV-----~~~~g~ty~r~~I~~~~~~~-~~~cP~~~~~l~~~~l~pn~~l~~~i~ 300 (732)
.-.||||++-+.-|+ ++.|||-|--.||++|+-+. ...||.|.-+-....+.|-+++|...+
T Consensus 4 g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~katkr~i~~e~alR~qa~ 71 (463)
T KOG1645|consen 4 GTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKATKRQIRPEYALRVQAM 71 (463)
T ss_pred cccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhHHHHHHHHHHHHHHHH
Confidence 357999999988885 57899999999999999422 246999988777788999888876653
|
|
| >KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.53 E-value=0.026 Score=60.92 Aligned_cols=44 Identities=25% Similarity=0.530 Sum_probs=36.3
Q ss_pred ccccccCcccCCCce----ecCCCcccchHHHHHHHhcCCCCCCCCCCCCC
Q 004761 239 YFRCPLSLELMIDPV----IVASGQTYERVFIQKWLDHGLNICPKTRQTLA 285 (732)
Q Consensus 239 ~f~Cpi~~~lm~dPV----~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~ 285 (732)
--.||+|++=|.+-| ++.|.|+|--.|+.+|+.. +||+||-...
T Consensus 175 LPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~~---scpvcR~~q~ 222 (493)
T KOG0804|consen 175 LPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWDS---SCPVCRYCQS 222 (493)
T ss_pred CCCcchhHhhcCccccceeeeecccccchHHHhhcccC---cChhhhhhcC
Confidence 347999999999887 3679999999999999864 6888875433
|
|
| >PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis | Back alignment and domain information |
|---|
Probab=93.47 E-value=2.1 Score=46.32 Aligned_cols=196 Identities=13% Similarity=0.092 Sum_probs=139.7
Q ss_pred CchHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHH-----HHHhc--CCHHHHHHhhccCCHHHHHHHHHHHHHhhc
Q 004761 444 TPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRM-----IIGNC--GAIPPLLSLLYSEAQLTQEHAVTALLNLSI 516 (732)
Q Consensus 444 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~-----~i~~~--G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~ 516 (732)
.+.+..|+..|..-+-+.+..+.....++.+.....+. .+... ..+..|+.-- +++++--.+-..|.....
T Consensus 75 ~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy--~~~dial~~g~mlRec~k 152 (335)
T PF08569_consen 75 SDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGY--ENPDIALNCGDMLRECIK 152 (335)
T ss_dssp HTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGG--GSTTTHHHHHHHHHHHTT
T ss_pred hCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHh--cCccccchHHHHHHHHHh
Confidence 45677888888888888898888888888766544432 23221 2233333333 355566677778887877
Q ss_pred CCchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhcc-CchhHH-HHHhc--chHHHHHHhhcCCCHHHHHHHHHH
Q 004761 517 NDENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSV-LEEYKA-KIGRS--GAVKALVDLLGSGTLRGRKDAATA 592 (732)
Q Consensus 517 ~~~~k~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~-~~~~k~-~i~~~--g~i~~Lv~lL~~~~~~~~~~Al~a 592 (732)
++.....+.....+..+...+..++-++...|..++..+.. +..... .+... ..+.....+|.+++--+++.+++.
T Consensus 153 ~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkL 232 (335)
T PF08569_consen 153 HESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKL 232 (335)
T ss_dssp SHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHH
T ss_pred hHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHH
Confidence 77767777778888889999999999999999999988654 333322 23332 567788889999999999999999
Q ss_pred HHHhccCchhHHHHHh----hchHHHHHHhc-CCChHHHHHHHHHHHHHhCChh
Q 004761 593 LFNLSIFHENKARIIQ----AGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGE 641 (732)
Q Consensus 593 L~nLs~~~~n~~~lv~----~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~ 641 (732)
|..|-..+.|...|.. ..-+..++.+| +.+..++-.|..++...+.+|.
T Consensus 233 L~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~ 286 (335)
T PF08569_consen 233 LGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPN 286 (335)
T ss_dssp HHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS
T ss_pred HHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCC
Confidence 9999999988765543 45777788888 8889999999999998877653
|
In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A. |
| >KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.45 E-value=1.4 Score=52.31 Aligned_cols=267 Identities=16% Similarity=0.152 Sum_probs=142.3
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcC-CchHHHHHHc
Q 004761 449 KLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSIN-DENKAMIAEA 527 (732)
Q Consensus 449 ~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~-~~~k~~i~~~ 527 (732)
.|++.+.+.+.+.+..|+.-|..=-..+.-+-..=.+...+..|+++|...+.++|..|+.+|+-|+.- .+.+. .
T Consensus 9 ~LlekmtssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~l----e 84 (1233)
T KOG1824|consen 9 NLLEKMTSSDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQL----E 84 (1233)
T ss_pred HHHHHccCCCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHH----H
Confidence 688899888888888887755432222111111112335688899999999999999999999988732 11111 0
Q ss_pred CCHHHHHHHHcCCCHHHHHHHHHHH-HHhccCchhHHHHHhc----chHHHHHHhhcC-C-CHHHHHHHHHHHHHhcc-C
Q 004761 528 GAIEPLIHVLKSGNGGAKENSAAAL-FSLSVLEEYKAKIGRS----GAVKALVDLLGS-G-TLRGRKDAATALFNLSI-F 599 (732)
Q Consensus 528 g~l~~Lv~lL~~~~~e~~~~Aa~~L-~~Ls~~~~~k~~i~~~----g~i~~Lv~lL~~-~-~~~~~~~Al~aL~nLs~-~ 599 (732)
..++.|..-+-+|....+..+.-.| ..++............ ...|.+...+.. + ...++-.++-.+..+-+ .
T Consensus 85 ~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~ 164 (1233)
T KOG1824|consen 85 TIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRF 164 (1233)
T ss_pred HHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhh
Confidence 1233334333334444443333332 2222222111111111 223344433322 2 23345555555554322 2
Q ss_pred chhHHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCChhhHHHHHHcCcHHHHHHHHh-cCCHHHHHHHHHHHHHH
Q 004761 600 HENKARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVE-SGSQRGKENAASILLQL 677 (732)
Q Consensus 600 ~~n~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~~r~~i~~~~~I~~Lv~lL~-~~s~~~~e~A~~~L~~L 677 (732)
..--.. ...++...++.-+ +....++.+++.+|+.|+..-. +.... +.+..|++-|. +.++....--+.+|..+
T Consensus 165 g~ll~~-fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~-~~ly~--~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i 240 (1233)
T KOG1824|consen 165 GTLLPN-FHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCN-RDLYV--ELIEHLLKGLSNRTQMSATRTYIQCLAAI 240 (1233)
T ss_pred cccCcc-hHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcC-HHHHH--HHHHHHHhccCCCCchHHHHHHHHHHHHH
Confidence 111111 2345556666666 6677788999999999976432 22211 12344444332 23444445556777777
Q ss_pred hcCChHhHHHHHhCCCHHHHHHch---hcCChHHHHHHHHHHHHhhcccc
Q 004761 678 CLHSPKFCTLVLQEGAVPPLVGLS---QSGTPRAKEKAQQLLSHFRNQRE 724 (732)
Q Consensus 678 ~~~~~~~~~~v~~~G~i~~L~~Ll---~~g~~~~k~kA~~lL~~l~~~~~ 724 (732)
|+..+.... ---..++|.+.... +..+++.+++....|..|-..-+
T Consensus 241 ~r~ag~r~~-~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp 289 (1233)
T KOG1824|consen 241 CRQAGHRFG-SHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCP 289 (1233)
T ss_pred HHHhcchhh-cccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhCh
Confidence 774322100 01124678888877 67788999999999988854433
|
|
| >PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5 | Back alignment and domain information |
|---|
Probab=93.43 E-value=0.39 Score=39.63 Aligned_cols=65 Identities=17% Similarity=0.167 Sum_probs=57.4
Q ss_pred HHHHHHHHHHhccCchhHHHHHhhchHHHHHHhc--CCChHHHHHHHHHHHHHhCChhhHHHHHHcC
Q 004761 586 RKDAATALFNLSIFHENKARIIQAGAVKHLVDLM--DPSTGMVDKAVALLANLSTVGEGRLAIAREG 650 (732)
Q Consensus 586 ~~~Al~aL~nLs~~~~n~~~lv~~G~V~~Ll~lL--~~~~~l~e~al~iL~nLa~~~~~r~~i~~~~ 650 (732)
.+.|+.|+.|+++.+.....+-+.++|+.++++. ++...++-.|..+|..++.+.+|.+.+.+.|
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHHcC
Confidence 6889999999999888888788889999999998 5667788889999999999999998887765
|
|
| >KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.39 E-value=0.051 Score=57.48 Aligned_cols=54 Identities=30% Similarity=0.531 Sum_probs=48.7
Q ss_pred CccccccCcccCCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCccc
Q 004761 238 PYFRCPLSLELMIDPVIVASGQTYERVFIQKWLDHGLNICPKTRQTLAHTNLIPN 292 (732)
Q Consensus 238 ~~f~Cpi~~~lm~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn 292 (732)
+...|.+++-.|.|||-+..|..||-..|-.|+... .+-|.||+++..++|++-
T Consensus 39 P~~hC~lt~~Pfe~PvC~~dg~vFd~~~Ivp~lkk~-g~nP~tG~kl~~~dLIkL 92 (518)
T KOG0883|consen 39 PFNHCSLTMLPFEDPVCTVDGTVFDLTAIVPWLKKH-GTNPITGQKLDGKDLIKL 92 (518)
T ss_pred ChhhceeccccccCcccccCCcEEeeehhhHHHHHc-CCCCCCCCccccccceee
Confidence 345799999999999999999999999999999874 678999999999998874
|
|
| >COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=93.16 E-value=14 Score=41.93 Aligned_cols=227 Identities=14% Similarity=0.047 Sum_probs=134.0
Q ss_pred HHhhccCCHHHHHHHHHHHHHhhcCC--chHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHhccCchhHHHHHhc-
Q 004761 493 LSLLYSEAQLTQEHAVTALLNLSIND--ENKAMIAEAGAIEPLIHVLKSGN-GGAKENSAAALFSLSVLEEYKAKIGRS- 568 (732)
Q Consensus 493 v~lL~s~~~~v~~~A~~~L~nLs~~~--~~k~~i~~~g~l~~Lv~lL~~~~-~e~~~~Aa~~L~~Ls~~~~~k~~i~~~- 568 (732)
+..|.+..+..-..|..++..++.-+ .+ ...|.+..++.....+. ...+.+++.++.+.+...+....+...
T Consensus 100 l~aL~s~epr~~~~Aaql~aaIA~~Elp~~----~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~Pe~li~~sN 175 (858)
T COG5215 100 LRALKSPEPRFCTMAAQLLAAIARMELPNS----LWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAPEDLIQMSN 175 (858)
T ss_pred HHHhcCCccHHHHHHHHHHHHHHHhhCccc----cchHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCHHHHHHHhh
Confidence 44556666776666767666665321 11 01233333444343443 558889999999998866655555544
Q ss_pred chHHHHHH-hhcCC-CHHHHHHHHHHHHHhccCchhHHHHHhhchHHHHHHhc-----CCChHHHHHHHHHHHHHhCCh-
Q 004761 569 GAVKALVD-LLGSG-TLRGRKDAATALFNLSIFHENKARIIQAGAVKHLVDLM-----DPSTGMVDKAVALLANLSTVG- 640 (732)
Q Consensus 569 g~i~~Lv~-lL~~~-~~~~~~~Al~aL~nLs~~~~n~~~lv~~G~V~~Ll~lL-----~~~~~l~e~al~iL~nLa~~~- 640 (732)
.++-.++. -++++ +..++-.|++||++-+.. .+..+...+-...+++.. .++.+++..|.++|..+..--
T Consensus 176 ~il~aiv~ga~k~et~~avRLaaL~aL~dsl~f--v~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY 253 (858)
T COG5215 176 VILFAIVMGALKNETTSAVRLAALKALMDSLMF--VQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYY 253 (858)
T ss_pred HHHHHHHHhhcccCchHHHHHHHHHHHHHHHHH--HHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHH
Confidence 33333333 35554 466788899999983221 222333344444444443 567788888999888775421
Q ss_pred hhHHHHHHcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHhHHHHHh----------------CCCHHHHHHchhcC
Q 004761 641 EGRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCLHSPKFCTLVLQ----------------EGAVPPLVGLSQSG 704 (732)
Q Consensus 641 ~~r~~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~v~~----------------~G~i~~L~~Ll~~g 704 (732)
..-.-..+..........+.+.++++...|+..-..+|...-+.--.... .+++|.|+.|+..+
T Consensus 254 ~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q 333 (858)
T COG5215 254 KFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQ 333 (858)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhc
Confidence 11112222222344455778889999999998877888742221111111 24789999999874
Q ss_pred Ch-------HHHHHHHHHHHHhhccccC
Q 004761 705 TP-------RAKEKAQQLLSHFRNQREG 725 (732)
Q Consensus 705 ~~-------~~k~kA~~lL~~l~~~~~~ 725 (732)
++ .....|..+|+++.....+
T Consensus 334 ~ed~~~DdWn~smaA~sCLqlfaq~~gd 361 (858)
T COG5215 334 GEDYYGDDWNPSMAASSCLQLFAQLKGD 361 (858)
T ss_pred CCCccccccchhhhHHHHHHHHHHHhhh
Confidence 32 3667888899998766543
|
|
| >KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=92.91 E-value=3 Score=48.97 Aligned_cols=240 Identities=18% Similarity=0.137 Sum_probs=149.6
Q ss_pred hhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHH-HhhcCCchHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHh
Q 004761 478 ENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALL-NLSINDENKAMIAEAGAIEPLIHVLKSGN-GGAKENSAAALFSL 555 (732)
Q Consensus 478 ~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~-nLs~~~~~k~~i~~~g~l~~Lv~lL~~~~-~e~~~~Aa~~L~~L 555 (732)
.-|...++.|+...|+.+.........-.+..+|. .+++..+- ....++++...++... .-....++-++.||
T Consensus 495 ~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~~~-----~~~v~~~~~s~~~~d~~~~en~E~L~altnL 569 (748)
T KOG4151|consen 495 YERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFPGER-----SYEVVKPLDSALHNDEKGLENFEALEALTNL 569 (748)
T ss_pred HhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCCCc-----hhhhhhhhcchhhhhHHHHHHHHHHHHhhcc
Confidence 44556677899999999988777788877778876 33322111 1223455555544322 11234577888888
Q ss_pred ccCc-hhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhccCchhHHH-HHh-hchHHHHHHhc-CCChHHHHHHHH
Q 004761 556 SVLE-EYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFHENKAR-IIQ-AGAVKHLVDLM-DPSTGMVDKAVA 631 (732)
Q Consensus 556 s~~~-~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~n~~~-lv~-~G~V~~Ll~lL-~~~~~l~e~al~ 631 (732)
+..+ ..|..|...-+++.+-.++-.+++..+..++..+.||..++.--.+ +++ ...++.....+ .........+++
T Consensus 570 as~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~lA~a~ 649 (748)
T KOG4151|consen 570 ASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFELAGAG 649 (748)
T ss_pred cCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhhhccc
Confidence 8755 4466677665666666667778899999999999999998765443 333 33444444444 323333334445
Q ss_pred HHHHHhCChhh-HHHHH-HcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHhHHHHHhCCCHHHHHHchhcCChHHH
Q 004761 632 LLANLSTVGEG-RLAIA-REGGIPSLVEVVESGSQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAK 709 (732)
Q Consensus 632 iL~nLa~~~~~-r~~i~-~~~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~v~~~G~i~~L~~Ll~~g~~~~k 709 (732)
.+..+....++ ...+. -..+...++.++.++++..+...+.+.+++.....+....+.....++.+..+-+-.-...+
T Consensus 650 a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~~~~~l~~~~~~~~a~~~ 729 (748)
T KOG4151|consen 650 ALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEALFEIAEKIFETEVMELLSGLQKLNRAPKR 729 (748)
T ss_pred cccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHHHHHHHHhccchHHHHHHHHHHhhhhhhh
Confidence 55544433332 22132 34578888889999999999999999998777666666777666666665554443334455
Q ss_pred HHHHHHHHHhhcc
Q 004761 710 EKAQQLLSHFRNQ 722 (732)
Q Consensus 710 ~kA~~lL~~l~~~ 722 (732)
+.|...|...-++
T Consensus 730 ~~~~~~l~~a~~~ 742 (748)
T KOG4151|consen 730 EDAAPCLSAAEEY 742 (748)
T ss_pred hhhhhHHHHHHHh
Confidence 5555555544433
|
|
| >PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms [] | Back alignment and domain information |
|---|
Probab=92.86 E-value=2.8 Score=43.20 Aligned_cols=146 Identities=16% Similarity=0.126 Sum_probs=105.1
Q ss_pred HHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCC-----HHHHHHHHHHHHHhhcCCc--hHHHHHHcCCHHHHH
Q 004761 462 QASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEA-----QLTQEHAVTALLNLSINDE--NKAMIAEAGAIEPLI 534 (732)
Q Consensus 462 ~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~-----~~v~~~A~~~L~nLs~~~~--~k~~i~~~g~l~~Lv 534 (732)
.-.|+..+.-+|.+ ++.|..+.++...-.|..+|+..+ ..++-..+.+++.|...++ ....+...+.+|..+
T Consensus 67 VcnaLaLlQ~vAsh-petr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcL 145 (262)
T PF04078_consen 67 VCNALALLQCVASH-PETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCL 145 (262)
T ss_dssp HHHHHHHHHHHHH--TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHH
T ss_pred HHHHHHHHHHHHcC-hHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHH
Confidence 34677778888875 689999999887777888886432 4567888888888877533 345566788999999
Q ss_pred HHHcCCCHHHHHHHHHHHHHhccCchhHHHHHh--------cchHHHHHH-hhcCCCHHHHHHHHHHHHHhccCchhHHH
Q 004761 535 HVLKSGNGGAKENSAAALFSLSVLEEYKAKIGR--------SGAVKALVD-LLGSGTLRGRKDAATALFNLSIFHENKAR 605 (732)
Q Consensus 535 ~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~--------~g~i~~Lv~-lL~~~~~~~~~~Al~aL~nLs~~~~n~~~ 605 (732)
..+..|+.-.+..|+-++..+..++..-..+.. ..++..++. +.+..+++..+..+++-..|+.++..+..
T Consensus 146 r~me~GselSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnprar~a 225 (262)
T PF04078_consen 146 RIMEFGSELSKTVATFILQKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPRAREA 225 (262)
T ss_dssp HHHHHS-HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTTHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHHHHHH
Confidence 999999988999999999888777665444432 133444444 34567899999999999999999988876
Q ss_pred HHh
Q 004761 606 IIQ 608 (732)
Q Consensus 606 lv~ 608 (732)
+.+
T Consensus 226 L~~ 228 (262)
T PF04078_consen 226 LRQ 228 (262)
T ss_dssp HHH
T ss_pred HHH
Confidence 664
|
Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B. |
| >KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=92.84 E-value=1.2 Score=52.20 Aligned_cols=192 Identities=18% Similarity=0.141 Sum_probs=128.8
Q ss_pred CchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHH-HhccCchhHHHHHhcchHHHHHHhhcCCC-HHHHHHHHHHHHH
Q 004761 518 DENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALF-SLSVLEEYKAKIGRSGAVKALVDLLGSGT-LRGRKDAATALFN 595 (732)
Q Consensus 518 ~~~k~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~-~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~-~~~~~~Al~aL~n 595 (732)
...+...+..|+...|+.+...++++++..+..+|. .+....+ + ....++++...+.... .-....++.++.|
T Consensus 494 K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~~-~----~~~v~~~~~s~~~~d~~~~en~E~L~altn 568 (748)
T KOG4151|consen 494 KYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFPGE-R----SYEVVKPLDSALHNDEKGLENFEALEALTN 568 (748)
T ss_pred HHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCCC-c----hhhhhhhhcchhhhhHHHHHHHHHHHHhhc
Confidence 344556668899999999999998888888887777 2222110 0 1134566655554332 2345579999999
Q ss_pred hccCch-hHHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCChhhHHH-HHH-cCcHHHHHHHHhcCCHHHHHHHH
Q 004761 596 LSIFHE-NKARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGEGRLA-IAR-EGGIPSLVEVVESGSQRGKENAA 671 (732)
Q Consensus 596 Ls~~~~-n~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~~r~~-i~~-~~~I~~Lv~lL~~~s~~~~e~A~ 671 (732)
|++.++ .|.++++.-.++.+-+++ ..+...+..++..+.||..++..-.. +.+ ..+++.....+........-.++
T Consensus 569 Las~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~lA~a 648 (748)
T KOG4151|consen 569 LASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFELAGA 648 (748)
T ss_pred ccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhhhcc
Confidence 988654 566788877777766666 77888899999999999998875443 344 34677777777665555555566
Q ss_pred HHHHHHhcCChHhHHHHH-hCCCHHHHHHchhcCChHHHHHHHH
Q 004761 672 SILLQLCLHSPKFCTLVL-QEGAVPPLVGLSQSGTPRAKEKAQQ 714 (732)
Q Consensus 672 ~~L~~L~~~~~~~~~~v~-~~G~i~~L~~Ll~~g~~~~k~kA~~ 714 (732)
+++..+......+|..+. -......+..+++++.+.+++....
T Consensus 649 ~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~ 692 (748)
T KOG4151|consen 649 GALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLV 692 (748)
T ss_pred ccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhh
Confidence 666656665555555322 2345677777777777777655444
|
|
| >PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | Back alignment and domain information |
|---|
Probab=92.72 E-value=0.85 Score=39.96 Aligned_cols=68 Identities=22% Similarity=0.239 Sum_probs=48.9
Q ss_pred chHHHHHHhhcCCCHHHHHHHHHHHHHhccCchhHHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHh
Q 004761 569 GAVKALVDLLGSGTLRGRKDAATALFNLSIFHENKARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLS 637 (732)
Q Consensus 569 g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~n~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa 637 (732)
..+++++..+.+.+.+++..|+.+|+|++........-.-..+...|.+++ ++++.+ ..++.+|.+|.
T Consensus 27 ~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~V-r~~a~~Ld~ll 95 (97)
T PF12755_consen 27 EILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDENV-RSAAELLDRLL 95 (97)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhH-HHHHHHHHHHh
Confidence 578999999999999999999999999986543322112256777777777 666664 44556666553
|
|
| >PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain | Back alignment and domain information |
|---|
Probab=92.66 E-value=4.9 Score=42.82 Aligned_cols=185 Identities=16% Similarity=0.158 Sum_probs=117.4
Q ss_pred CHHHHH-HhhccCCHHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchh--HH-
Q 004761 488 AIPPLL-SLLYSEAQLTQEHAVTALLNLSINDENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEY--KA- 563 (732)
Q Consensus 488 ~I~~Lv-~lL~s~~~~v~~~A~~~L~nLs~~~~~k~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~--k~- 563 (732)
.+..|+ ..+.+.++.+++.|+.+|+-.+.-+. .++. ..++.+...++.++.+++..|+.+++.+...... -.
T Consensus 27 ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~---~~a~-~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~ 102 (298)
T PF12719_consen 27 LLDSLILPAVQSSDPAVRELALKCLGLCCLLDK---ELAK-EHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDS 102 (298)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCh---HHHH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccc
Confidence 333333 56788999999999999998887543 2222 2477788888888899999999999998653221 11
Q ss_pred ------HHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhccCchhHHHHHhhchHHHHHHhc-C----CChHHHHHHHHH
Q 004761 564 ------KIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFHENKARIIQAGAVKHLVDLM-D----PSTGMVDKAVAL 632 (732)
Q Consensus 564 ------~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~n~~~lv~~G~V~~Ll~lL-~----~~~~l~e~al~i 632 (732)
.......+..+.+++.+.++.++..|+..+..|-..+.... ...++..|+-+. + .+..++..--..
T Consensus 103 ~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~F 179 (298)
T PF12719_consen 103 ESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQCLSVF 179 (298)
T ss_pred hhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHHHHHH
Confidence 12233577888889998899999999999988866543222 133444444333 2 233444333344
Q ss_pred HHHHhCChhhHHHHHHcCcHHHHHHHHhcCC----HHH---HHHHHHHHHHHhc
Q 004761 633 LANLSTVGEGRLAIAREGGIPSLVEVVESGS----QRG---KENAASILLQLCL 679 (732)
Q Consensus 633 L~nLa~~~~~r~~i~~~~~I~~Lv~lL~~~s----~~~---~e~A~~~L~~L~~ 679 (732)
+-..|......+......+++.+-.+..... +.. -...+..+..++.
T Consensus 180 fp~y~~s~~~~Q~~l~~~f~~~l~~~~~~~~~~~~~~~~v~~~~v~~~lv~lt~ 233 (298)
T PF12719_consen 180 FPVYASSSPENQERLAEAFLPTLRTLSNAPDELDSPLAMVSPSQVASFLVDLTD 233 (298)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHHhCcccccCchhhCCHHHHHHHHHHHCC
Confidence 5566766655556666667788777775432 211 3345566666665
|
|
| >KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.52 E-value=8.2 Score=45.35 Aligned_cols=257 Identities=18% Similarity=0.192 Sum_probs=144.0
Q ss_pred chHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcC-Cc----
Q 004761 445 PYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSIN-DE---- 519 (732)
Q Consensus 445 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~-~~---- 519 (732)
...+++=..|++...-+..+|++.+..+...+.. .+. -++..|-.++++..+.++-.|+++|..++.- +.
T Consensus 245 ~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r---~l~--pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~ 319 (865)
T KOG1078|consen 245 PLFPFLESCLRHKSEMVIYEAARAIVSLPNTNSR---ELA--PAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTV 319 (865)
T ss_pred hHHHHHHHHHhchhHHHHHHHHHHHhhccccCHh---hcc--hHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccccc
Confidence 3456666777888888889999999999865432 122 3788888889999999999999999998752 21
Q ss_pred -hH--H-HHHHc---CCHHHHHHHHcCCCHHHHHH----HHHHHHHhccCchhHHHHH-------------hcchHHHHH
Q 004761 520 -NK--A-MIAEA---GAIEPLIHVLKSGNGGAKEN----SAAALFSLSVLEEYKAKIG-------------RSGAVKALV 575 (732)
Q Consensus 520 -~k--~-~i~~~---g~l~~Lv~lL~~~~~e~~~~----Aa~~L~~Ls~~~~~k~~i~-------------~~g~i~~Lv 575 (732)
|+ . .+-+. =....+..+|+.|+.+.... .+....+++. ++|..+. ..+.+..|.
T Consensus 320 cN~elE~lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~disD--eFKivvvdai~sLc~~fp~k~~~~m~FL~ 397 (865)
T KOG1078|consen 320 CNLDLESLITDSNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDISD--EFKIVVVDAIRSLCLKFPRKHTVMMNFLS 397 (865)
T ss_pred cchhHHhhhcccccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccc--cceEEeHHHHHHHHhhccHHHHHHHHHHH
Confidence 11 1 11111 12444566777776543332 3333333332 2221111 114455555
Q ss_pred HhhcC-CCHHHHHHHHHHHHHhcc-CchhHHHHHhhchHHHHHHhcCCChHHHHHHHHHHHHHhCChhhHHHHHHcCcHH
Q 004761 576 DLLGS-GTLRGRKDAATALFNLSI-FHENKARIIQAGAVKHLVDLMDPSTGMVDKAVALLANLSTVGEGRLAIAREGGIP 653 (732)
Q Consensus 576 ~lL~~-~~~~~~~~Al~aL~nLs~-~~~n~~~lv~~G~V~~Ll~lL~~~~~l~e~al~iL~nLa~~~~~r~~i~~~~~I~ 653 (732)
.+|+. |.-+-+++...++-.+.. +++.|.. +...|.+++ .+......+..+|..|-.. |-.+.....-+.
T Consensus 398 ~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe~-----~L~~LCefI-EDce~~~i~~rILhlLG~E--gP~a~~Pskyir 469 (865)
T KOG1078|consen 398 NMLREEGGFEFKRAIVDAIIDIIEENPDSKER-----GLEHLCEFI-EDCEFTQIAVRILHLLGKE--GPKAPNPSKYIR 469 (865)
T ss_pred HHHHhccCchHHHHHHHHHHHHHHhCcchhhH-----HHHHHHHHH-HhccchHHHHHHHHHHhcc--CCCCCCcchhhH
Confidence 55553 234445555555544443 3333322 333455555 0111223344444444221 000001112244
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhcCChHhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHhhc
Q 004761 654 SLVEVVESGSQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFRN 721 (732)
Q Consensus 654 ~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~ 721 (732)
.+...+.-.+..++..|+.+|..+..+++. ....+.-.|...+.+.+..+++.|...|+.+.+
T Consensus 470 ~iyNRviLEn~ivRaaAv~alaKfg~~~~~-----l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~~ 532 (865)
T KOG1078|consen 470 FIYNRVILENAIVRAAAVSALAKFGAQDVV-----LLPSILVLLKRCLNDSDDEVRDRATFYLKNLEE 532 (865)
T ss_pred HHhhhhhhhhhhhHHHHHHHHHHHhcCCCC-----ccccHHHHHHHHhcCchHHHHHHHHHHHHHhhh
Confidence 444444335677888899999888854432 333455667777778889999999999999984
|
|
| >PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] | Back alignment and domain information |
|---|
Probab=92.38 E-value=9 Score=41.08 Aligned_cols=178 Identities=19% Similarity=0.197 Sum_probs=96.4
Q ss_pred CHHHHHHHHHHHHHhhcCCchHHHHH--HcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccC---chhHHHHHhcchHHHH
Q 004761 500 AQLTQEHAVTALLNLSINDENKAMIA--EAGAIEPLIHVLKSGNGGAKENSAAALFSLSVL---EEYKAKIGRSGAVKAL 574 (732)
Q Consensus 500 ~~~v~~~A~~~L~nLs~~~~~k~~i~--~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~---~~~k~~i~~~g~i~~L 574 (732)
....++.++..|.++-........+. ....+..+...++.|..+-+..|+.++.-++.. ......+.. ...|.|
T Consensus 56 ~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~-~~~~~L 134 (309)
T PF05004_consen 56 SSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIFE-ELKPVL 134 (309)
T ss_pred CHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHHH-HHHHHH
Confidence 34555555555555432221112221 123466777888888766666676666666554 122333333 366888
Q ss_pred HHhhcCCC--HHHHHHHHHHHHHhccCchhHH-HHH-hhchHHHHHHh--c--CC---------ChHHHHHHHHHHHHHh
Q 004761 575 VDLLGSGT--LRGRKDAATALFNLSIFHENKA-RII-QAGAVKHLVDL--M--DP---------STGMVDKAVALLANLS 637 (732)
Q Consensus 575 v~lL~~~~--~~~~~~Al~aL~nLs~~~~n~~-~lv-~~G~V~~Ll~l--L--~~---------~~~l~e~al~iL~nLa 637 (732)
...+.+++ +..+..++.||.-++....+-. .+. -...+..+... . +. +..+...|+...+-|.
T Consensus 135 ~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lLl 214 (309)
T PF05004_consen 135 KRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWALLL 214 (309)
T ss_pred HHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHHHH
Confidence 88887654 4455566666666554322111 111 01222222111 1 11 2457777777777665
Q ss_pred CChhh-H-HHHHHcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Q 004761 638 TVGEG-R-LAIAREGGIPSLVEVVESGSQRGKENAASILLQLCL 679 (732)
Q Consensus 638 ~~~~~-r-~~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~ 679 (732)
..-+. . .... ...++.|+.+|.+.+..++..|-.+|.-|..
T Consensus 215 t~~~~~~~~~~~-~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E 257 (309)
T PF05004_consen 215 TTLPDSKLEDLL-EEALPALSELLDSDDVDVRIAAGEAIALLYE 257 (309)
T ss_pred hcCCHHHHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 43332 2 2222 3469999999999999988887777665543
|
The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis []. |
| >PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D | Back alignment and domain information |
|---|
Probab=92.30 E-value=5.2 Score=43.92 Aligned_cols=243 Identities=19% Similarity=0.222 Sum_probs=135.7
Q ss_pred chHHHHHHHhcCC-CHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcc-CCH-HHHHHHHHHHHHhhcCCchH
Q 004761 445 PYVKKLIEDLNST-SNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYS-EAQ-LTQEHAVTALLNLSINDENK 521 (732)
Q Consensus 445 ~~i~~Lv~~L~s~-~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s-~~~-~v~~~A~~~L~nLs~~~~~k 521 (732)
+.|..+++.|.+. +...++.++-.|..-+. ++..|..+...|.+..++..+.. .+. ..--.++.++.-++.+..+.
T Consensus 21 Dev~ylld~l~~~~~~s~Rr~sll~La~K~~-~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~ 99 (361)
T PF07814_consen 21 DEVEYLLDGLESSSSSSVRRSSLLELASKCA-DPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNM 99 (361)
T ss_pred HHHHHHHhhcccCCCccHHHHHHHHHHHHhC-CHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcch
Confidence 4478888888843 34677778878877775 46889999999999999999953 333 33333444555566665555
Q ss_pred HHHHHcCCHHHHHHHHcCCCH-HHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhc---------CCCHHHHHHHHH
Q 004761 522 AMIAEAGAIEPLIHVLKSGNG-GAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLG---------SGTLRGRKDAAT 591 (732)
Q Consensus 522 ~~i~~~g~l~~Lv~lL~~~~~-e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~---------~~~~~~~~~Al~ 591 (732)
..+...+.+..++.++.-... ......- .....+-..+. ...+..+.+++. ......+..|+.
T Consensus 100 ~l~~~~~~~~ll~~Ll~~~~~~~~~~~~~------~~~~~~lsk~~-~~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall 172 (361)
T PF07814_consen 100 HLLLDRDSLRLLLKLLKVDKSLDVPSDSD------SSRKKNLSKVQ-QKSRSLCKELLSSGSSWKSPKPPELSPQTLALL 172 (361)
T ss_pred hhhhchhHHHHHHHHhccccccccccchh------hhhhhhhhHHH-HHHHHHHHHHHhccccccccCCcccccccHHHH
Confidence 555556666666777761100 0000000 00000000110 011121222221 112234555667
Q ss_pred HHHHhcc------------C---chhHHHHHhhchHHHHHHhc-C---C-------------ChHHHHHHHHHHHHHhCC
Q 004761 592 ALFNLSI------------F---HENKARIIQAGAVKHLVDLM-D---P-------------STGMVDKAVALLANLSTV 639 (732)
Q Consensus 592 aL~nLs~------------~---~~n~~~lv~~G~V~~Ll~lL-~---~-------------~~~l~e~al~iL~nLa~~ 639 (732)
+|..++. . .--++.+...|++..+++++ + . +-...+.++.+|.+....
T Consensus 173 ~le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~ 252 (361)
T PF07814_consen 173 ALESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFL 252 (361)
T ss_pred HHHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhc
Confidence 7766631 0 11356677888999988887 2 1 112456788999988654
Q ss_pred h-hhHHHHHHc--CcHHHHHH-HHhc---CCHHHHHHHHHHHHHHhcCChHhHHHHHhCCCHH
Q 004761 640 G-EGRLAIARE--GGIPSLVE-VVES---GSQRGKENAASILLQLCLHSPKFCTLVLQEGAVP 695 (732)
Q Consensus 640 ~-~~r~~i~~~--~~I~~Lv~-lL~~---~s~~~~e~A~~~L~~L~~~~~~~~~~v~~~G~i~ 695 (732)
. +++...... +.++.+.. ++.. ........++.++.|++.++|+.+..+...++..
T Consensus 253 ~~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~~l~~ 315 (361)
T PF07814_consen 253 SEENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASPKLGQ 315 (361)
T ss_pred CccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhhHhcc
Confidence 3 345444442 22333333 3322 2233467899999999999988888776554433
|
melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants. |
| >PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | Back alignment and domain information |
|---|
Probab=92.22 E-value=0.77 Score=40.23 Aligned_cols=67 Identities=15% Similarity=0.188 Sum_probs=54.3
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHhHHHHHh--CCCHHHHHHchhcCChHHHHHHHHHHHHhh
Q 004761 651 GIPSLVEVVESGSQRGKENAASILLQLCLHSPKFCTLVLQ--EGAVPPLVGLSQSGTPRAKEKAQQLLSHFR 720 (732)
Q Consensus 651 ~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~v~~--~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~ 720 (732)
.++.++..+...+.+++.+|+.+|.+++.... ..++. ..++..|..++...++++|..|..+-++|+
T Consensus 28 Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~---~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a~~Ld~llk 96 (97)
T PF12755_consen 28 ILPPVLKCFDDQDSRVRYYACEALYNISKVAR---GEILPYFNEIFDALCKLSADPDENVRSAAELLDRLLK 96 (97)
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhc
Confidence 57888888888999999999999999998432 23332 457889999999999999988877777765
|
|
| >PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=92.22 E-value=0.37 Score=48.75 Aligned_cols=120 Identities=25% Similarity=0.290 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHHhccCc---hhHHHHHhcchHHHHHHhhcCC---------------CHHHHHHHHHHHHHhccCchhH
Q 004761 542 GGAKENSAAALFSLSVLE---EYKAKIGRSGAVKALVDLLGSG---------------TLRGRKDAATALFNLSIFHENK 603 (732)
Q Consensus 542 ~e~~~~Aa~~L~~Ls~~~---~~k~~i~~~g~i~~Lv~lL~~~---------------~~~~~~~Al~aL~nLs~~~~n~ 603 (732)
...|++|.-+|.|++..= .+-+.|.. -++..|++..-.. ...-++.|+.+|..||..+.|.
T Consensus 80 ~~lREnalV~laNisgqLdLs~~~e~I~~-PildGLLHWaVcpsa~A~Dpfp~~~~~~~lSPqrlaLEaLcKLsV~e~NV 158 (257)
T PF12031_consen 80 EQLRENALVTLANISGQLDLSDYPESIAR-PILDGLLHWAVCPSAEAQDPFPTAGPHSPLSPQRLALEALCKLSVIENNV 158 (257)
T ss_pred HHHhhcceEeeeeeeeeeecccCchHHHH-HHHHHHHHHHhccchhccCCCCCCCCCCCCCHHHHHHHHHHHhheeccCc
Confidence 357888888888887521 22233322 2445555554322 1244789999999999998888
Q ss_pred HHHHhhc-------hHHHHHHhc--CCChHHHHHHHHHHHHHhCChhh--HHHHHHcCcHHHHHHHHhcC
Q 004761 604 ARIIQAG-------AVKHLVDLM--DPSTGMVDKAVALLANLSTVGEG--RLAIAREGGIPSLVEVVESG 662 (732)
Q Consensus 604 ~~lv~~G-------~V~~Ll~lL--~~~~~l~e~al~iL~nLa~~~~~--r~~i~~~~~I~~Lv~lL~~~ 662 (732)
..++..+ .+..|++++ .++...+|-|+.+|.+||...+. |....+.+.|..|+.+++..
T Consensus 159 DliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i~~Li~FiE~a 228 (257)
T PF12031_consen 159 DLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCISHLIAFIEDA 228 (257)
T ss_pred ceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchHHHHHHHHHHH
Confidence 7666543 556677777 56778899999999999987664 34345677899999999753
|
This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM. |
| >KOG1248 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.99 E-value=10 Score=46.53 Aligned_cols=239 Identities=20% Similarity=0.210 Sum_probs=129.2
Q ss_pred cCchHHHHH---H-HhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhc--CCHHHHHHhhccCCHHHHHHHHHHHHHhhc
Q 004761 443 TTPYVKKLI---E-DLNSTSNEIQASAAAELRLLAKHNMENRMIIGNC--GAIPPLLSLLYSEAQLTQEHAVTALLNLSI 516 (732)
Q Consensus 443 ~~~~i~~Lv---~-~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~--G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~ 516 (732)
+++.|..+. . ..++.+..+|.++-+.|..++.. +.......+. .....|..-+.+.....+..++.+|..|-.
T Consensus 648 ~e~~vs~l~~v~~~~e~~~~~~vQkK~yrlL~~l~~~-~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~ 726 (1176)
T KOG1248|consen 648 TESQVSKLFTVDPEFENSSSTKVQKKAYRLLEELSSS-PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLK 726 (1176)
T ss_pred cchhHHHHHHhhHHhhccccHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 344555444 2 22344778899999999998865 2222111110 112223333334445556666666655432
Q ss_pred C-C-chHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhcc----CchhHHHHHhcchHHHHHHhhcCC---C-HHHH
Q 004761 517 N-D-ENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSV----LEEYKAKIGRSGAVKALVDLLGSG---T-LRGR 586 (732)
Q Consensus 517 ~-~-~~k~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~----~~~~k~~i~~~g~i~~Lv~lL~~~---~-~~~~ 586 (732)
. + +....+.. .++-++-.++..+...+.+|..+|..+.. .++..+. ....|...+.++..+ + ....
T Consensus 727 ~~~~e~~~~i~k--~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~--~~~~lnefl~~Isagl~gd~~~~~ 802 (1176)
T KOG1248|consen 727 LLSAEHCDLIPK--LIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEP--ASAILNEFLSIISAGLVGDSTRVV 802 (1176)
T ss_pred hccHHHHHHHHH--HHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccc--hHHHHHHHHHHHHhhhcccHHHHH
Confidence 1 2 23333322 24444444577789999999999998873 1111111 112555555555543 2 2222
Q ss_pred HHHHHHHHHhccCchhHHHHHhhchHHHHHHh----c-CCChHHHHHHHHHHHHHhC-ChhhHHHHHHcCcHHHHHHHHh
Q 004761 587 KDAATALFNLSIFHENKARIIQAGAVKHLVDL----M-DPSTGMVDKAVALLANLST-VGEGRLAIAREGGIPSLVEVVE 660 (732)
Q Consensus 587 ~~Al~aL~nLs~~~~n~~~lv~~G~V~~Ll~l----L-~~~~~l~e~al~iL~nLa~-~~~~r~~i~~~~~I~~Lv~lL~ 660 (732)
-..+.++..+.... ..++..+.+..+++. | +.++.++..|++.+..++. .|+....--..-.++.+..+++
T Consensus 803 as~Ivai~~il~e~---~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~ 879 (1176)
T KOG1248|consen 803 ASDIVAITHILQEF---KNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSH 879 (1176)
T ss_pred HHHHHHHHHHHHHH---hccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHH
Confidence 22245555554322 223444444444444 4 7789999999999998865 3432222222235788888887
Q ss_pred cCCHHHHHHHHHHHHHHhcC-ChHhHHHHH
Q 004761 661 SGSQRGKENAASILLQLCLH-SPKFCTLVL 689 (732)
Q Consensus 661 ~~s~~~~e~A~~~L~~L~~~-~~~~~~~v~ 689 (732)
......+...-..|-.|++. +.+....++
T Consensus 880 d~k~~~r~Kvr~LlekLirkfg~~eLe~~~ 909 (1176)
T KOG1248|consen 880 DHKIKVRKKVRLLLEKLIRKFGAEELESFL 909 (1176)
T ss_pred hhhHHHHHHHHHHHHHHHHHhCHHHHHhhC
Confidence 77777787777777777763 334333333
|
|
| >KOG2259 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.98 E-value=1.7 Score=49.80 Aligned_cols=218 Identities=20% Similarity=0.155 Sum_probs=135.9
Q ss_pred HHHhhccCCHHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCc------hhHHHH
Q 004761 492 LLSLLYSEAQLTQEHAVTALLNLSINDENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLE------EYKAKI 565 (732)
Q Consensus 492 Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~------~~k~~i 565 (732)
|..+....|..++.+|+..|..|+..-.. ..-.....++.+.+....+|..|..+++-..... ++-+.=
T Consensus 203 l~~~~~~~D~~Vrt~A~eglL~L~eg~kL-----~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~k 277 (823)
T KOG2259|consen 203 LIYLEHDQDFRVRTHAVEGLLALSEGFKL-----SKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEK 277 (823)
T ss_pred HHHHhcCCCcchHHHHHHHHHhhcccccc-----cHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhhh
Confidence 66677778888888888888777642111 1123556678888888889988877766554311 111111
Q ss_pred HhcchHHHHHHhhcCCCHHHHHHHHHHHHHhccCchhHHHHHhhchHHHHHHhcCCChHHHHHHHHHHHHH--hC-----
Q 004761 566 GRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFHENKARIIQAGAVKHLVDLMDPSTGMVDKAVALLANL--ST----- 638 (732)
Q Consensus 566 ~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~n~~~lv~~G~V~~Ll~lL~~~~~l~e~al~iL~nL--a~----- 638 (732)
....++..+.+.+++.+..++..|+++|..+-...+ .++..-.=+.++.-+.....--+..-....+- ++
T Consensus 278 l~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSe---e~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~ 354 (823)
T KOG2259|consen 278 LKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSE---EIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWN 354 (823)
T ss_pred hHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHH---HHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCcccc
Confidence 112467788888888888888888888876644321 12221111222221100000011111222222 00
Q ss_pred -------ChhhHHHHHHcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHhHHHHHhCCCHHHHHHchhcCChHHHHH
Q 004761 639 -------VGEGRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEK 711 (732)
Q Consensus 639 -------~~~~r~~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~v~~~G~i~~L~~Ll~~g~~~~k~k 711 (732)
..++...|+.+|+-..++.-++..--++++.|+..+..|+...|...... +..|+.+++..-..+|.+
T Consensus 355 advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~~a-----ldfLvDMfNDE~~~VRL~ 429 (823)
T KOG2259|consen 355 ADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAVRA-----LDFLVDMFNDEIEVVRLK 429 (823)
T ss_pred ccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHHHH-----HHHHHHHhccHHHHHHHH
Confidence 11234567778888888888887777899999999999999888766544 567888888888889999
Q ss_pred HHHHHHHhhcc
Q 004761 712 AQQLLSHFRNQ 722 (732)
Q Consensus 712 A~~lL~~l~~~ 722 (732)
|...|+.+...
T Consensus 430 ai~aL~~Is~~ 440 (823)
T KOG2259|consen 430 AIFALTMISVH 440 (823)
T ss_pred HHHHHHHHHHH
Confidence 99888887654
|
|
| >KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.86 E-value=31 Score=40.36 Aligned_cols=240 Identities=13% Similarity=0.106 Sum_probs=131.3
Q ss_pred HHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHHHc-CCCHH
Q 004761 465 AAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAMIAEAGAIEPLIHVLK-SGNGG 543 (732)
Q Consensus 465 Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k~~i~~~g~l~~Lv~lL~-~~~~e 543 (732)
.+-+.-+|+.+-+.....+.. ++..|..+|.+....++.-|+..+..|+........+... .+.++..|+ ..+..
T Consensus 309 VLFeaI~l~~h~D~e~~ll~~--~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h--~d~Ii~sLkterDvS 384 (938)
T KOG1077|consen 309 VLFEAISLAIHLDSEPELLSR--AVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKH--QDTIINSLKTERDVS 384 (938)
T ss_pred HHHHHHHHHHHcCCcHHHHHH--HHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHH--HHHHHHHhccccchH
Confidence 344444555444333444443 5667888888888888888888888887776555555544 777888888 55788
Q ss_pred HHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhcc-Cc-------hhHH-------HHHh
Q 004761 544 AKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSI-FH-------ENKA-------RIIQ 608 (732)
Q Consensus 544 ~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~-~~-------~n~~-------~lv~ 608 (732)
+|..|+..|..++...+.+.. +..|+.+|.+.+...++.-..=+.-|+. +. +.-- ..++
T Consensus 385 irrravDLLY~mcD~~Nak~I------V~elLqYL~tAd~sireeivlKvAILaEKyAtDy~WyVdviLqLiriagd~vs 458 (938)
T KOG1077|consen 385 IRRRAVDLLYAMCDVSNAKQI------VAELLQYLETADYSIREEIVLKVAILAEKYATDYSWYVDVILQLIRIAGDYVS 458 (938)
T ss_pred HHHHHHHHHHHHhchhhHHHH------HHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhccccc
Confidence 999999999998875554443 3556777776666666543332333322 10 1111 2233
Q ss_pred hchHHHHHHhcCCChHHHHHHHHHHHHHhCChhhHHHHHHcCc--HHHHHH---------------HH----hcCCHHHH
Q 004761 609 AGAVKHLVDLMDPSTGMVDKAVALLANLSTVGEGRLAIAREGG--IPSLVE---------------VV----ESGSQRGK 667 (732)
Q Consensus 609 ~G~V~~Ll~lL~~~~~l~e~al~iL~nLa~~~~~r~~i~~~~~--I~~Lv~---------------lL----~~~s~~~~ 667 (732)
.++-..++++.-.+++++.-|+..+-.....+.+.+.|++.|| +...-. ++ ...++.++
T Consensus 459 deVW~RvvQiVvNnedlq~yaak~~fe~Lq~~a~hE~mVKvggyiLGEfg~LIa~~prss~~~qFsllh~K~~~~s~~tr 538 (938)
T KOG1077|consen 459 DEVWYRVVQIVVNNEDLQGYAAKRLFEYLQKPACHENMVKVGGYILGEFGNLIADDPRSSPAVQFSLLHEKLHLCSPVTR 538 (938)
T ss_pred HHHHHHhheeEecchhhhHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhhhhhcCCCCCChHHHHHHHHHHhccCChhHH
Confidence 4455555555533556666666555444343445555555443 222222 22 22345555
Q ss_pred HHHHHHHHHHhcCChHhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHh
Q 004761 668 ENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHF 719 (732)
Q Consensus 668 e~A~~~L~~L~~~~~~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l 719 (732)
---+.+...++...|+....+. ..+..-.+.-+.++++.|.+-|.+.
T Consensus 539 ~lLLtTyiKl~nl~PEi~~~v~-----~vFq~~~n~~D~ElQqRa~EYLql~ 585 (938)
T KOG1077|consen 539 ALLLTTYIKLINLFPEIKSNVQ-----KVFQLYSNLIDVELQQRAVEYLQLS 585 (938)
T ss_pred HHHHHHHHHHHhhChhhhHHHH-----HHHHhhcccCCHHHHHHHHHHHHHH
Confidence 5555555555555555333221 1111222223456666666655544
|
|
| >KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown] | Back alignment and domain information |
|---|
Probab=91.77 E-value=4 Score=45.22 Aligned_cols=146 Identities=15% Similarity=0.165 Sum_probs=97.8
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhccCch----hHHHHHhcchHHHHHHhhcCCC-----H--HHHHHHHHHHHHhccC
Q 004761 531 EPLIHVLKSGNGGAKENSAAALFSLSVLEE----YKAKIGRSGAVKALVDLLGSGT-----L--RGRKDAATALFNLSIF 599 (732)
Q Consensus 531 ~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~----~k~~i~~~g~i~~Lv~lL~~~~-----~--~~~~~Al~aL~nLs~~ 599 (732)
..+..+++..+.+-+-.|+-....+...++ +|..+.+.-+.+.+-.+|.+.+ + --+.-++..|...|..
T Consensus 14 ~~~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~ 93 (698)
T KOG2611|consen 14 DDCLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRV 93 (698)
T ss_pred hhHHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCC
Confidence 335556665566666666666666655443 5666777756688888887532 2 2344567777788887
Q ss_pred ch--hHHHHHhhchHHHHHHhc--CC------ChHHHHHHHHHHHHHhCChhhHHHHHHcCcHHHHHHHHhcCC-HHHHH
Q 004761 600 HE--NKARIIQAGAVKHLVDLM--DP------STGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVESGS-QRGKE 668 (732)
Q Consensus 600 ~~--n~~~lv~~G~V~~Ll~lL--~~------~~~l~e~al~iL~nLa~~~~~r~~i~~~~~I~~Lv~lL~~~s-~~~~e 668 (732)
++ ....+++ .+|.|++++ .. +..+.+.+..+|..+++++.|...++..|+++.+.++-.-.+ ....+
T Consensus 94 pElAsh~~~v~--~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~~~~~~d~a 171 (698)
T KOG2611|consen 94 PELASHEEMVS--RIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYELPDGSHDMA 171 (698)
T ss_pred hhhccCHHHHH--hhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhCCCCchhHH
Confidence 76 3445664 789999998 22 234889999999999999999999999999999998654321 22233
Q ss_pred HHHHHHHHHh
Q 004761 669 NAASILLQLC 678 (732)
Q Consensus 669 ~A~~~L~~L~ 678 (732)
-|+.++.-+.
T Consensus 172 lal~Vlll~~ 181 (698)
T KOG2611|consen 172 LALKVLLLLV 181 (698)
T ss_pred HHHHHHHHHH
Confidence 4444444333
|
|
| >KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure] | Back alignment and domain information |
|---|
Probab=91.70 E-value=4.3 Score=48.22 Aligned_cols=216 Identities=15% Similarity=0.146 Sum_probs=140.4
Q ss_pred ccCCHHHHHHHHHHHHHhhcC-CchHHHHHHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHhccCchhHHHHHh--cchHH
Q 004761 497 YSEAQLTQEHAVTALLNLSIN-DENKAMIAEAGAIEPLIHVLKS-GNGGAKENSAAALFSLSVLEEYKAKIGR--SGAVK 572 (732)
Q Consensus 497 ~s~~~~v~~~A~~~L~nLs~~-~~~k~~i~~~g~l~~Lv~lL~~-~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~--~g~i~ 572 (732)
.+..+...-.|.+++...+.. ..+...+- -.+...+..+.. ..+-++..|..+++..+.. ..+.. .+++.
T Consensus 460 ~~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~--~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~----~vl~~~~p~ild 533 (1005)
T KOG2274|consen 460 YQESPFLLLRAFLTISKFSSSTVINPQLLQ--HFLNATVNALTMDVPPPVKISAVRAFCGYCKV----KVLLSLQPMILD 533 (1005)
T ss_pred cccCHHHHHHHHHHHHHHHhhhccchhHHH--HHHHHHHHhhccCCCCchhHHHHHHHHhccCc----eeccccchHHHH
Confidence 345677666777777765532 22222111 123333333433 3455777777777776621 12222 27888
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhccCchhHHHHHhhchHHHHHHhc---CCChHHHHHHHHHHHHHhCChhhHHHHHHc
Q 004761 573 ALVDLLGSGTLRGRKDAATALFNLSIFHENKARIIQAGAVKHLVDLM---DPSTGMVDKAVALLANLSTVGEGRLAIARE 649 (732)
Q Consensus 573 ~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~n~~~lv~~G~V~~Ll~lL---~~~~~l~e~al~iL~nLa~~~~~r~~i~~~ 649 (732)
.|.++....+.++.-.-+.+|...+..+.......++-+.|..+.++ +.++-+...+-.++..|+....+..-+. .
T Consensus 534 ~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~m~-e 612 (1005)
T KOG2274|consen 534 GLLQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYGPMQ-E 612 (1005)
T ss_pred HHHHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcchH-H
Confidence 88888887778888888889999999888777777888888888887 5677788888888888876443333322 2
Q ss_pred CcHHHHHHHHhcCC----HHHHHHHHHHHHHHhcCChH-hHHHHHhCCCHHHHHHch-hcCChHHHHHHHHHHHHhh
Q 004761 650 GGIPSLVEVVESGS----QRGKENAASILLQLCLHSPK-FCTLVLQEGAVPPLVGLS-QSGTPRAKEKAQQLLSHFR 720 (732)
Q Consensus 650 ~~I~~Lv~lL~~~s----~~~~e~A~~~L~~L~~~~~~-~~~~v~~~G~i~~L~~Ll-~~g~~~~k~kA~~lL~~l~ 720 (732)
..||.++..|.... .....-|+.+|..+.++.|. .-+.+.. -++|++.+.. .+++..+-..|.++|+.+=
T Consensus 613 ~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~-~~FpaVak~tlHsdD~~tlQ~~~EcLra~I 688 (1005)
T KOG2274|consen 613 RLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLIC-YAFPAVAKITLHSDDHETLQNATECLRALI 688 (1005)
T ss_pred HHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHH-HHhHHhHhheeecCChHHHHhHHHHHHHHH
Confidence 46999999997644 55566778888878776544 2233333 3566666654 4556677788888888773
|
|
| >PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 | Back alignment and domain information |
|---|
Probab=91.65 E-value=9.1 Score=37.38 Aligned_cols=93 Identities=17% Similarity=0.174 Sum_probs=71.0
Q ss_pred CHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHHH
Q 004761 458 SNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAMIAEAGAIEPLIHVL 537 (732)
Q Consensus 458 ~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k~~i~~~g~l~~Lv~lL 537 (732)
++.++..++..+..|+...+. +++ ..++.+...|+++++.++..|+.+|..|...+--|. +...+..++..+
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~----~ve-~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~---k~~l~~~~l~~l 72 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPN----LVE-PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKV---KGQLFSRILKLL 72 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcH----HHH-hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceee---hhhhhHHHHHHH
Confidence 356788899999988866542 232 468889999999999999999999999875433221 112247778888
Q ss_pred cCCCHHHHHHHHHHHHHhccC
Q 004761 538 KSGNGGAKENSAAALFSLSVL 558 (732)
Q Consensus 538 ~~~~~e~~~~Aa~~L~~Ls~~ 558 (732)
.+.+++++..|...+..+...
T Consensus 73 ~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 73 VDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred cCCCHHHHHHHHHHHHHHHHh
Confidence 889999999999999988764
|
|
| >KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown] | Back alignment and domain information |
|---|
Probab=91.58 E-value=14 Score=41.20 Aligned_cols=186 Identities=18% Similarity=0.158 Sum_probs=111.2
Q ss_pred HHHhhccCCHHHHHHHHHHHHHhhcCC----chHHHHHHcCCHHHHHHHHcCCC-------HHHHHHHHHHHHHhccCch
Q 004761 492 LLSLLYSEAQLTQEHAVTALLNLSIND----ENKAMIAEAGAIEPLIHVLKSGN-------GGAKENSAAALFSLSVLEE 560 (732)
Q Consensus 492 Lv~lL~s~~~~v~~~A~~~L~nLs~~~----~~k~~i~~~g~l~~Lv~lL~~~~-------~e~~~~Aa~~L~~Ls~~~~ 560 (732)
+..++...+..-+-.|+-....+..++ .+|..+.++=+++.+-++|.+++ .-.+..+..+|...+..++
T Consensus 16 ~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pE 95 (698)
T KOG2611|consen 16 CLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPE 95 (698)
T ss_pred HHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChh
Confidence 334444444455555665666666543 36778888878888888887642 2356677778877777665
Q ss_pred hHHHHHhcchHHHHHHhhcCC-C------HHHHHHHHHHHHHhccCchhHHHHHhhchHHHHHHhcCCChHHHHHHHHH-
Q 004761 561 YKAKIGRSGAVKALVDLLGSG-T------LRGRKDAATALFNLSIFHENKARIIQAGAVKHLVDLMDPSTGMVDKAVAL- 632 (732)
Q Consensus 561 ~k~~i~~~g~i~~Lv~lL~~~-~------~~~~~~Al~aL~nLs~~~~n~~~lv~~G~V~~Ll~lL~~~~~l~e~al~i- 632 (732)
-...---...||.|.+++..+ + .....++-.+|+.++..+.....++..|+++.+.++-.....-.+.++++
T Consensus 96 lAsh~~~v~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~~~~~~d~alal~ 175 (698)
T KOG2611|consen 96 LASHEEMVSRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYELPDGSHDMALALK 175 (698)
T ss_pred hccCHHHHHhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhCCCCchhHHHHHH
Confidence 321111114689999998743 2 23678899999999999999999999999999998762111112334433
Q ss_pred -HHHHhC----ChhhHHHHHHcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Q 004761 633 -LANLST----VGEGRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCL 679 (732)
Q Consensus 633 -L~nLa~----~~~~r~~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~ 679 (732)
+-.++. .++.-..+.. .|..+..=+.......+-..+.+|..+-.
T Consensus 176 Vlll~~~~~~cw~e~~~~fla--li~~va~df~~~~~a~KfElc~lL~~vl~ 225 (698)
T KOG2611|consen 176 VLLLLVSKLDCWSETIERFLA--LIAAVARDFAVLHNALKFELCHLLSAVLS 225 (698)
T ss_pred HHHHHHHhcccCcCCHHHHHH--HHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 333322 2222222221 13333333333445566677777765433
|
|
| >KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.43 E-value=2.1 Score=48.05 Aligned_cols=151 Identities=19% Similarity=0.211 Sum_probs=108.5
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhccCchhHHHHHhhchHHHHHHhc-CCC----hHHHHHHHHHHHHHhCChhhHHH
Q 004761 571 VKALVDLLGSGTLRGRKDAATALFNLSIFHENKARIIQAGAVKHLVDLM-DPS----TGMVDKAVALLANLSTVGEGRLA 645 (732)
Q Consensus 571 i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~n~~~lv~~G~V~~Ll~lL-~~~----~~l~e~al~iL~nLa~~~~~r~~ 645 (732)
...+.+++.+++...+..|++-|..++....-...++...++..|..++ +.+ ..+...++..+..|-.+.-.-=.
T Consensus 85 a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW~ 164 (713)
T KOG2999|consen 85 AKRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSWE 164 (713)
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeeee
Confidence 3556778888888888889999999999999999999999999999999 433 34444555555554443221001
Q ss_pred HHHcCcHHHHHHHHh--cCCHHHHHHHHHHHHHHhcCChHhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHhhc
Q 004761 646 IAREGGIPSLVEVVE--SGSQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFRN 721 (732)
Q Consensus 646 i~~~~~I~~Lv~lL~--~~s~~~~e~A~~~L~~L~~~~~~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~ 721 (732)
.....+|.....+.. .....+-..|+..|-++..++....+.+.++--+..|+..++.++.+...+|..++..+-.
T Consensus 165 ~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~~ 242 (713)
T KOG2999|consen 165 SVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALFR 242 (713)
T ss_pred ecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHHh
Confidence 111223444444432 2344566788999999888887778888899899999999999999999999888876643
|
|
| >KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=91.29 E-value=0.089 Score=55.83 Aligned_cols=47 Identities=23% Similarity=0.336 Sum_probs=40.8
Q ss_pred ccccCcccCCCceecCCCcccchHHHHHHHhcC-CCCCCCCCCCCCCC
Q 004761 241 RCPLSLELMIDPVIVASGQTYERVFIQKWLDHG-LNICPKTRQTLAHT 287 (732)
Q Consensus 241 ~Cpi~~~lm~dPV~~~~g~ty~r~~I~~~~~~~-~~~cP~~~~~l~~~ 287 (732)
+|-||-+==+|=-|-+|||-.|-.|+..|..++ +.+||+||..+..+
T Consensus 371 LCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGt 418 (563)
T KOG1785|consen 371 LCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGT 418 (563)
T ss_pred HHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCceeeEeccc
Confidence 599999988888788999999999999999653 68999999877554
|
|
| >PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division [] | Back alignment and domain information |
|---|
Probab=91.08 E-value=1.1 Score=43.92 Aligned_cols=76 Identities=17% Similarity=0.314 Sum_probs=62.2
Q ss_pred HHHHhhchHHHHHHhc----C------CChHHHHHHHHHHHHHhCChhhHHHHHHc-CcHHHHHHHHhcCCHHHHHHHHH
Q 004761 604 ARIIQAGAVKHLVDLM----D------PSTGMVDKAVALLANLSTVGEGRLAIARE-GGIPSLVEVVESGSQRGKENAAS 672 (732)
Q Consensus 604 ~~lv~~G~V~~Ll~lL----~------~~~~l~e~al~iL~nLa~~~~~r~~i~~~-~~I~~Lv~lL~~~s~~~~e~A~~ 672 (732)
..+++.|++..|+++| . .+......++.+|..|..+..|...+... +++..|+..|.+.+..++..|+.
T Consensus 101 ~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~le 180 (187)
T PF06371_consen 101 QEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALE 180 (187)
T ss_dssp HHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHH
T ss_pred HHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHH
Confidence 4677889999999988 1 23467788999999999999999988874 57999999999999999999999
Q ss_pred HHHHHhc
Q 004761 673 ILLQLCL 679 (732)
Q Consensus 673 ~L~~L~~ 679 (732)
+|..+|.
T Consensus 181 iL~~lc~ 187 (187)
T PF06371_consen 181 ILAALCL 187 (187)
T ss_dssp HHHHHHT
T ss_pred HHHHHHC
Confidence 9999983
|
Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A. |
| >KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.92 E-value=13 Score=43.77 Aligned_cols=207 Identities=17% Similarity=0.181 Sum_probs=132.2
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCchHHHHHHc
Q 004761 448 KKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAMIAEA 527 (732)
Q Consensus 448 ~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k~~i~~~ 527 (732)
..|.++|.+.....+..|.+.|-.+..++... ...+|..|+...+.|.+++.-.---|..-+..+.+-..+
T Consensus 38 ~dL~~lLdSnkd~~KleAmKRIia~iA~G~dv------S~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALL--- 108 (968)
T KOG1060|consen 38 DDLKQLLDSNKDSLKLEAMKRIIALIAKGKDV------SLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALL--- 108 (968)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHhcCCcH------HHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceee---
Confidence 56889999998888999998665554333221 246788888888999988876655555455433331111
Q ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhccCch-hHHHH
Q 004761 528 GAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFHE-NKARI 606 (732)
Q Consensus 528 g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~-n~~~l 606 (732)
-+..+-+-|++.++.+|..|+.+|..+-. .+...-++-++-+...+..+-+++.|+.||-.|=.-+. .+.++
T Consensus 109 -SIntfQk~L~DpN~LiRasALRvlSsIRv------p~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~qL 181 (968)
T KOG1060|consen 109 -SINTFQKALKDPNQLIRASALRVLSSIRV------PMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQL 181 (968)
T ss_pred -eHHHHHhhhcCCcHHHHHHHHHHHHhcch------hhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHHH
Confidence 25566677899999999999998876532 22221223333445566788999999999988855443 33333
Q ss_pred HhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCChhhHHHHHHcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Q 004761 607 IQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCL 679 (732)
Q Consensus 607 v~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~~r~~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~ 679 (732)
+ ..+-.+| +.++.++-.|+.+...+|-. |-.++. +-...+..++...++-.+-..+..|..-|+
T Consensus 182 ~-----e~I~~LLaD~splVvgsAv~AF~evCPe---rldLIH-knyrklC~ll~dvdeWgQvvlI~mL~RYAR 246 (968)
T KOG1060|consen 182 E-----EVIKKLLADRSPLVVGSAVMAFEEVCPE---RLDLIH-KNYRKLCRLLPDVDEWGQVVLINMLTRYAR 246 (968)
T ss_pred H-----HHHHHHhcCCCCcchhHHHHHHHHhchh---HHHHhh-HHHHHHHhhccchhhhhHHHHHHHHHHHHH
Confidence 3 3444445 67777777788877777642 333332 335666666665566666666666666655
|
|
| >PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1 | Back alignment and domain information |
|---|
Probab=90.91 E-value=2.3 Score=44.01 Aligned_cols=94 Identities=17% Similarity=0.208 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHh-CChhhHHHHHHcCcHHHHHHHHh-cCCHHHHHHHHHHHHHHhcCChHhHHHHHhCCCHHHHHHchhc
Q 004761 626 VDKAVALLANLS-TVGEGRLAIAREGGIPSLVEVVE-SGSQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQS 703 (732)
Q Consensus 626 ~e~al~iL~nLa-~~~~~r~~i~~~~~I~~Lv~lL~-~~s~~~~e~A~~~L~~L~~~~~~~~~~v~~~G~i~~L~~Ll~~ 703 (732)
...|+.+|.-+| -+|..|..+.+..++..++.++. ...+..+-.++.+|..+...++.+.+.+-+.+++..++.++.+
T Consensus 108 i~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk~ 187 (257)
T PF08045_consen 108 IALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLKS 187 (257)
T ss_pred HHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHcc
Confidence 445667777654 47888888889999999999994 4678889999999999999999999999999999999999998
Q ss_pred CC--hHHHHHHHHHHHHh
Q 004761 704 GT--PRAKEKAQQLLSHF 719 (732)
Q Consensus 704 g~--~~~k~kA~~lL~~l 719 (732)
.. ..+|-|..+.|-..
T Consensus 188 ~~~~~~~r~K~~EFL~fy 205 (257)
T PF08045_consen 188 KSTDRELRLKCIEFLYFY 205 (257)
T ss_pred ccccHHHhHHHHHHHHHH
Confidence 64 67888888866443
|
Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], []. |
| >smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins | Back alignment and domain information |
|---|
Probab=90.55 E-value=0.3 Score=36.95 Aligned_cols=41 Identities=12% Similarity=0.409 Sum_probs=31.8
Q ss_pred ccccCcc--cCCCceecCCC-----cccchHHHHHHHhcC-CCCCCCCC
Q 004761 241 RCPLSLE--LMIDPVIVASG-----QTYERVFIQKWLDHG-LNICPKTR 281 (732)
Q Consensus 241 ~Cpi~~~--lm~dPV~~~~g-----~ty~r~~I~~~~~~~-~~~cP~~~ 281 (732)
.|-||++ --.+|.+.||. +-+=+.|+.+|+... ..+||.|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 3777875 45778888875 668899999999754 56899985
|
Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class |
| >PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B | Back alignment and domain information |
|---|
Probab=90.52 E-value=0.23 Score=37.14 Aligned_cols=43 Identities=26% Similarity=0.401 Sum_probs=22.2
Q ss_pred cccCcccC--CCceec--CCCcccchHHHHHHHhcCCCCCCCCCCCC
Q 004761 242 CPLSLELM--IDPVIV--ASGQTYERVFIQKWLDHGLNICPKTRQTL 284 (732)
Q Consensus 242 Cpi~~~lm--~dPV~~--~~g~ty~r~~I~~~~~~~~~~cP~~~~~l 284 (732)
||+|.+.| +|--.. +||..+||.|..+-...++..||-|++++
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 78888888 222233 48999999998888876668999999875
|
|
| >PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis | Back alignment and domain information |
|---|
Probab=90.48 E-value=13 Score=40.33 Aligned_cols=196 Identities=12% Similarity=0.064 Sum_probs=140.1
Q ss_pred HHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCC-ch-----HHHHHHcCCHHHHHHHHcCC--CHHHHHHHHHHHHH
Q 004761 483 IGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSIND-EN-----KAMIAEAGAIEPLIHVLKSG--NGGAKENSAAALFS 554 (732)
Q Consensus 483 i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~-~~-----k~~i~~~g~l~~Lv~lL~~~--~~e~~~~Aa~~L~~ 554 (732)
+...|.+..|+..|..-+.+.+..++.+..++-... .+ ...+... -+-++..|-.| ++++...+...|..
T Consensus 72 i~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~--~peil~~L~~gy~~~dial~~g~mlRe 149 (335)
T PF08569_consen 72 IYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERH--RPEILDILLRGYENPDIALNCGDMLRE 149 (335)
T ss_dssp HHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT----THHHHHHHHGGGSTTTHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhC--CHHHHHHHHHHhcCccccchHHHHHHH
Confidence 344588889999999889999999999998886542 22 2233321 12233333222 46777888888988
Q ss_pred hccCchhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhcc-CchhHHHHHhh---chHHHHHHhc-CCChHHHHHH
Q 004761 555 LSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSI-FHENKARIIQA---GAVKHLVDLM-DPSTGMVDKA 629 (732)
Q Consensus 555 Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~-~~~n~~~lv~~---G~V~~Ll~lL-~~~~~l~e~a 629 (732)
...++.....+.....+..+.+++..++=++..+|..++..|-. +.......+.. ..+.....+| +++--++..+
T Consensus 150 c~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqs 229 (335)
T PF08569_consen 150 CIKHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQS 229 (335)
T ss_dssp HTTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHH
T ss_pred HHhhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhh
Confidence 88888777777778888889999999999999999999998655 44444455543 4556666777 6666678899
Q ss_pred HHHHHHHhCChhhHHHHHH----cCcHHHHHHHHhcCCHHHHHHHHHHHHHHhcC
Q 004761 630 VALLANLSTVGEGRLAIAR----EGGIPSLVEVVESGSQRGKENAASILLQLCLH 680 (732)
Q Consensus 630 l~iL~nLa~~~~~r~~i~~----~~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~ 680 (732)
+.+|+.|...+.+-..+.. ..-+..++.+|++.+...+-.|..+.--+..+
T Consensus 230 lkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVAN 284 (335)
T PF08569_consen 230 LKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVAN 284 (335)
T ss_dssp HHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhC
Confidence 9999999888877665554 22478888899999999999999999888774
|
In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A. |
| >PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1 | Back alignment and domain information |
|---|
Probab=90.26 E-value=2.8 Score=43.34 Aligned_cols=93 Identities=20% Similarity=0.217 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhc-cCCHHHHHHHHHHHHHhhcC-CchHHHHHHcCCHHHHHHHHc
Q 004761 461 IQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLY-SEAQLTQEHAVTALLNLSIN-DENKAMIAEAGAIEPLIHVLK 538 (732)
Q Consensus 461 ~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~-s~~~~v~~~A~~~L~nLs~~-~~~k~~i~~~g~l~~Lv~lL~ 538 (732)
....|+..|.-++--.+..|..+....++..|+.+|. ...+.++..++.+|..+-.+ +.|...+-+.+|+..++.+++
T Consensus 107 li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk 186 (257)
T PF08045_consen 107 LIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLK 186 (257)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHc
Confidence 4556888888888888899999999999999999995 45788999999998776555 778888889999999999998
Q ss_pred CCC--HHHHHHHHHHHH
Q 004761 539 SGN--GGAKENSAAALF 553 (732)
Q Consensus 539 ~~~--~e~~~~Aa~~L~ 553 (732)
+.+ .+++...+-.|+
T Consensus 187 ~~~~~~~~r~K~~EFL~ 203 (257)
T PF08045_consen 187 SKSTDRELRLKCIEFLY 203 (257)
T ss_pred cccccHHHhHHHHHHHH
Confidence 764 566666655553
|
Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], []. |
| >PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4 | Back alignment and domain information |
|---|
Probab=89.89 E-value=53 Score=39.81 Aligned_cols=216 Identities=19% Similarity=0.164 Sum_probs=123.7
Q ss_pred cccCchHHHHHHHhcC-----CCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhc----cCC----HHHHHHH
Q 004761 441 VTTTPYVKKLIEDLNS-----TSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLY----SEA----QLTQEHA 507 (732)
Q Consensus 441 ~~~~~~i~~Lv~~L~s-----~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~----s~~----~~v~~~A 507 (732)
.++.+.+..++..+.+ ...+.....++.|+..++. ..||..+.+.|+++.|+..|. ... ..+.+..
T Consensus 113 ~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv-~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~L 191 (802)
T PF13764_consen 113 LAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKV-KVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQL 191 (802)
T ss_pred hhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhh-HHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHH
Confidence 3456677888888764 2334455667777777766 689999999999999998885 333 5666666
Q ss_pred HHHHHHhhcCCch---H--HHHHH--------cCCHHHHHHHHcCC----CHHHHHHHHHHHHHhccCchhHHH-HHhcc
Q 004761 508 VTALLNLSINDEN---K--AMIAE--------AGAIEPLIHVLKSG----NGGAKENSAAALFSLSVLEEYKAK-IGRSG 569 (732)
Q Consensus 508 ~~~L~nLs~~~~~---k--~~i~~--------~g~l~~Lv~lL~~~----~~e~~~~Aa~~L~~Ls~~~~~k~~-i~~~g 569 (732)
+.++.-|...... . ..... ...+..|+..+.+. ++.+....+.+|-+|+..+..+.. +++.
T Consensus 192 L~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~- 270 (802)
T PF13764_consen 192 LEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH- 270 (802)
T ss_pred HHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH-
Confidence 6666555322110 0 00011 12266666666554 467888889999888875543322 2211
Q ss_pred hHHHHHHhhcC--C-CHHHHHHHHHHHHHhccC-------chhHHHHHhhchHHHHHHhc-CC--------ChHH-----
Q 004761 570 AVKALVDLLGS--G-TLRGRKDAATALFNLSIF-------HENKARIIQAGAVKHLVDLM-DP--------STGM----- 625 (732)
Q Consensus 570 ~i~~Lv~lL~~--~-~~~~~~~Al~aL~nLs~~-------~~n~~~lv~~G~V~~Ll~lL-~~--------~~~l----- 625 (732)
+.+.+++=+- . .+.. ...+.++..++.. ..-|..+++.|++...+++| .. ++..
T Consensus 271 -F~p~l~f~~~D~~~~~~~-~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~ 348 (802)
T PF13764_consen 271 -FKPYLDFDKFDEEHSPDE-QFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLS 348 (802)
T ss_pred -HHHhcChhhcccccCchH-HHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhc
Confidence 1222222111 1 1111 1223444444331 12456889999999999988 21 1222
Q ss_pred ---HHHHHHHHHHHhCChhhHHHHHHcCcHHHHHHHHhc
Q 004761 626 ---VDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVES 661 (732)
Q Consensus 626 ---~e~al~iL~nLa~~~~~r~~i~~~~~I~~Lv~lL~~ 661 (732)
...++.+|.-||......+.++..++| .++..|..
T Consensus 349 ~psLp~iL~lL~GLa~gh~~tQ~~~~~~~l-~~lH~LEq 386 (802)
T PF13764_consen 349 RPSLPYILRLLRGLARGHEPTQLLIAEQLL-PLLHRLEQ 386 (802)
T ss_pred CCcHHHHHHHHHHHHhcCHHHHHHHHhhHH-HHHHHhhc
Confidence 345778888888866655555555666 44555543
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.55 E-value=7.9 Score=44.65 Aligned_cols=164 Identities=18% Similarity=0.205 Sum_probs=97.2
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHh---cCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCchHHHHHHc
Q 004761 451 IEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGN---CGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAMIAEA 527 (732)
Q Consensus 451 v~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~---~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k~~i~~~ 527 (732)
+..+..-.++.+..|+..||.+.++..-+-..+-. ..++..++..+. .++..+-.++++|.|+-.++.++..++..
T Consensus 550 l~~l~~wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~~~g~~~~~s~ 628 (745)
T KOG0301|consen 550 LAILLQWPVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSNPAGRELFMSR 628 (745)
T ss_pred HHHHhcCCHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 33444556777888999999999876544333331 234555555555 56788899999999998887777777643
Q ss_pred --CCHHHHHHHHcCCCHHHHHHHHHHHHHhcc--CchhHHHHHhcchHHHHHHhhcC-----CCHHHHHHHHHHHHHhcc
Q 004761 528 --GAIEPLIHVLKSGNGGAKENSAAALFSLSV--LEEYKAKIGRSGAVKALVDLLGS-----GTLRGRKDAATALFNLSI 598 (732)
Q Consensus 528 --g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~--~~~~k~~i~~~g~i~~Lv~lL~~-----~~~~~~~~Al~aL~nLs~ 598 (732)
..+.++.+.=...+..++...+....|++. ...+-. .+..+.|...+.. .+-++....+.||.+|+.
T Consensus 629 ~~~i~~~~~~~~s~~~knl~ia~atlaln~sv~l~~~~~~----~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t 704 (745)
T KOG0301|consen 629 LESILDPVIEASSLSNKNLQIALATLALNYSVLLIQDNEQ----LEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMT 704 (745)
T ss_pred HHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHhcccc----cchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhcc
Confidence 222222222111223444444444444442 222211 2333444333322 133567778889999999
Q ss_pred CchhHHHHHhhchHHHHHHhc
Q 004761 599 FHENKARIIQAGAVKHLVDLM 619 (732)
Q Consensus 599 ~~~n~~~lv~~G~V~~Ll~lL 619 (732)
.+.+..++.+.--|..++.-+
T Consensus 705 ~~~~~~~~A~~~~v~sia~~~ 725 (745)
T KOG0301|consen 705 VDASVIQLAKNRSVDSIAKKL 725 (745)
T ss_pred ccHHHHHHHHhcCHHHHHHHH
Confidence 888887777766666666655
|
|
| >KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=89.52 E-value=0.5 Score=49.57 Aligned_cols=51 Identities=18% Similarity=0.198 Sum_probs=41.9
Q ss_pred CCCC--CccccccCcccCCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCC
Q 004761 234 VPIP--PYFRCPLSLELMIDPVIVASGQTYERVFIQKWLDHGLNICPKTRQTLA 285 (732)
Q Consensus 234 ~~~p--~~f~Cpi~~~lm~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~ 285 (732)
.+.| ++=.||||..=--..|..||||.-|..||.+|+-.. +.|=+|+.+..
T Consensus 415 ~~lp~sEd~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN~-k~CFfCktTv~ 467 (489)
T KOG4692|consen 415 KDLPDSEDNLCPICYAGPINAVFAPCSHRSCYGCITQHLMNC-KRCFFCKTTVI 467 (489)
T ss_pred CCCCCcccccCcceecccchhhccCCCCchHHHHHHHHHhcC-CeeeEecceee
Confidence 3455 688999999877788889999999999999999764 67888866543
|
|
| >PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing | Back alignment and domain information |
|---|
Probab=89.37 E-value=39 Score=37.38 Aligned_cols=92 Identities=11% Similarity=0.186 Sum_probs=71.4
Q ss_pred CCHHHHHHHHcCCC---HHHHHHHHHHHHHhccCch-hHHHHHhcchHHHHHHhhc-CC---CHHHHHHHHHHHHHhccC
Q 004761 528 GAIEPLIHVLKSGN---GGAKENSAAALFSLSVLEE-YKAKIGRSGAVKALVDLLG-SG---TLRGRKDAATALFNLSIF 599 (732)
Q Consensus 528 g~l~~Lv~lL~~~~---~e~~~~Aa~~L~~Ls~~~~-~k~~i~~~g~i~~Lv~lL~-~~---~~~~~~~Al~aL~nLs~~ 599 (732)
..+..|..++++.. +.+-..|+.++..+..++. .-..+.+.|.++.+++.+. .+ +.++...--.+|..||.+
T Consensus 106 ~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN 185 (379)
T PF06025_consen 106 SLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICLN 185 (379)
T ss_pred hHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhcC
Confidence 34555666776653 5677788888888876554 4566677899999999887 43 456666666788889999
Q ss_pred chhHHHHHhhchHHHHHHhc
Q 004761 600 HENKARIIQAGAVKHLVDLM 619 (732)
Q Consensus 600 ~~n~~~lv~~G~V~~Ll~lL 619 (732)
......+.+.+.++.+++++
T Consensus 186 ~~Gl~~~~~~~~l~~~f~if 205 (379)
T PF06025_consen 186 NRGLEKVKSSNPLDKLFEIF 205 (379)
T ss_pred HHHHHHHHhcChHHHHHHHh
Confidence 99999999999999999998
|
This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO. |
| >COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.33 E-value=0.23 Score=51.38 Aligned_cols=43 Identities=28% Similarity=0.564 Sum_probs=37.0
Q ss_pred ccccccCcccCCC---ceecCCCcccchHHHHHHHhcCC--CCCCCCC
Q 004761 239 YFRCPLSLELMID---PVIVASGQTYERVFIQKWLDHGL--NICPKTR 281 (732)
Q Consensus 239 ~f~Cpi~~~lm~d---PV~~~~g~ty~r~~I~~~~~~~~--~~cP~~~ 281 (732)
-|.||+..+.-.| ||.++|||..-+.++.+--+.|. ..||.|-
T Consensus 336 ~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP 383 (396)
T COG5109 336 LFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCP 383 (396)
T ss_pred eeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCC
Confidence 5899999999876 99999999999999988877774 4599884
|
|
| >COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=89.07 E-value=42 Score=38.40 Aligned_cols=105 Identities=19% Similarity=0.134 Sum_probs=64.3
Q ss_pred HHHHHHHhcCCC----HHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCchHH
Q 004761 447 VKKLIEDLNSTS----NEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKA 522 (732)
Q Consensus 447 i~~Lv~~L~s~~----~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k~ 522 (732)
.-++|+.+.++. .......++....+.+.+++.+..+ .|.|-..|++.-..+.-.+.+++..++...-. .
T Consensus 225 ~lklv~hf~~n~smknq~a~V~lvr~~~~ll~~n~q~~~q~-----rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv~-~ 298 (898)
T COG5240 225 QLKLVEHFRGNASMKNQLAGVLLVRATVELLKENSQALLQL-----RPFLNSWLSDKFEMVFLEAARAVCALSEENVG-S 298 (898)
T ss_pred HHHHHHHhhcccccccchhheehHHHHHHHHHhChHHHHHH-----HHHHHHHhcCcchhhhHHHHHHHHHHHHhccC-H
Confidence 345666665432 2223344556666666666555443 34555666666678888888888776642211 1
Q ss_pred HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccC
Q 004761 523 MIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVL 558 (732)
Q Consensus 523 ~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~ 558 (732)
.+.+ ..+..|-.+|++.....|-.|+.+|-.|+..
T Consensus 299 ~~~~-~~vs~L~~fL~s~rv~~rFsA~Riln~lam~ 333 (898)
T COG5240 299 QFVD-QTVSSLRTFLKSTRVVLRFSAMRILNQLAMK 333 (898)
T ss_pred HHHH-HHHHHHHHHHhcchHHHHHHHHHHHHHHHhh
Confidence 1221 2355666677788888999999999988753
|
|
| >KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.89 E-value=58 Score=38.73 Aligned_cols=170 Identities=16% Similarity=0.104 Sum_probs=97.0
Q ss_pred HhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCchHHHHHHcCCHHH
Q 004761 453 DLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAMIAEAGAIEP 532 (732)
Q Consensus 453 ~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k~~i~~~g~l~~ 532 (732)
.....++.++..|+-+|-.|-.-.++.+..+. ..+-.+|...++.+.-.|+.+.-.+|- + +..+. .+....
T Consensus 151 ~~~D~s~yVRk~AA~AIpKLYsLd~e~k~qL~-----e~I~~LLaD~splVvgsAv~AF~evCP--e-rldLI-Hknyrk 221 (968)
T KOG1060|consen 151 AVTDPSPYVRKTAAHAIPKLYSLDPEQKDQLE-----EVIKKLLADRSPLVVGSAVMAFEEVCP--E-RLDLI-HKNYRK 221 (968)
T ss_pred HhcCCcHHHHHHHHHhhHHHhcCChhhHHHHH-----HHHHHHhcCCCCcchhHHHHHHHHhch--h-HHHHh-hHHHHH
Confidence 33456788999999999888877776665444 345566777888888888888876662 2 22222 234666
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHhccCc---hh---------------HHHH-------Hhc----chHHHHHHhhcCCCH
Q 004761 533 LIHVLKSGNGGAKENSAAALFSLSVLE---EY---------------KAKI-------GRS----GAVKALVDLLGSGTL 583 (732)
Q Consensus 533 Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~---~~---------------k~~i-------~~~----g~i~~Lv~lL~~~~~ 583 (732)
|+.+|.+-+.=-+..+..+|..-+.+. .+ +... ... -.+...-.+|.+.++
T Consensus 222 lC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~ 301 (968)
T KOG1060|consen 222 LCRLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNP 301 (968)
T ss_pred HHhhccchhhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCc
Confidence 666665543333333444443222110 00 0000 000 012222335567788
Q ss_pred HHHHHHHHHHHHhccCchhHHHHHhhchHHHHHHhcCCChHHHHHHHHHHHHHh
Q 004761 584 RGRKDAATALFNLSIFHENKARIIQAGAVKHLVDLMDPSTGMVDKAVALLANLS 637 (732)
Q Consensus 584 ~~~~~Al~aL~nLs~~~~n~~~lv~~G~V~~Ll~lL~~~~~l~e~al~iL~nLa 637 (732)
.+..+++.+.++|+...++. .++.+|+.+|.++..++.-.+..++.++
T Consensus 302 sVVmA~aql~y~lAP~~~~~------~i~kaLvrLLrs~~~vqyvvL~nIa~~s 349 (968)
T KOG1060|consen 302 SVVMAVAQLFYHLAPKNQVT------KIAKALVRLLRSNREVQYVVLQNIATIS 349 (968)
T ss_pred HHHHHHHhHHHhhCCHHHHH------HHHHHHHHHHhcCCcchhhhHHHHHHHH
Confidence 99999999999998765332 3567788887333344444444444443
|
|
| >KOG4653 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.66 E-value=11 Score=44.70 Aligned_cols=211 Identities=13% Similarity=0.087 Sum_probs=122.8
Q ss_pred CCHHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHH-h
Q 004761 499 EAQLTQEHAVTALLNLSINDENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVD-L 577 (732)
Q Consensus 499 ~~~~v~~~A~~~L~nLs~~~~~k~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~-l 577 (732)
+-+.++..|++.|..+.........+...+.+...+..|++.++-+-.+|...+..|+.. .....+|-|.+ +
T Consensus 739 ~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev-------y~e~il~dL~e~Y 811 (982)
T KOG4653|consen 739 DQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV-------YPEDILPDLSEEY 811 (982)
T ss_pred CcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHh-------cchhhHHHHHHHH
Confidence 345567788888888876555556666788899999999998888888888877776642 23345677766 3
Q ss_pred hcCCC---HHHHHHHHHHHHHhccCchhHHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCChhhH--HHHHHcCc
Q 004761 578 LGSGT---LRGRKDAATALFNLSIFHENKARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGEGR--LAIAREGG 651 (732)
Q Consensus 578 L~~~~---~~~~~~Al~aL~nLs~~~~n~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~~r--~~i~~~~~ 651 (732)
....+ ++.+.....|+.++..-.+.-..-..+-.+...+..+ +++...+.-+++.|++||.-..++ ..+. ..
T Consensus 812 ~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~~--ev 889 (982)
T KOG4653|consen 812 LSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFFH--EV 889 (982)
T ss_pred HhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHHH--HH
Confidence 33221 2233333455555543211111111123334444444 556666778899999998744332 1222 23
Q ss_pred HHHHHHHHhc-CCHHHHHHHHHHHHHHhcCChHhHHHHHhC---CCHHHHHHchhcCC-hHHHHHHHHHHHH
Q 004761 652 IPSLVEVVES-GSQRGKENAASILLQLCLHSPKFCTLVLQE---GAVPPLVGLSQSGT-PRAKEKAQQLLSH 718 (732)
Q Consensus 652 I~~Lv~lL~~-~s~~~~e~A~~~L~~L~~~~~~~~~~v~~~---G~i~~L~~Ll~~g~-~~~k~kA~~lL~~ 718 (732)
+..++.+... ++.-+|..|+.++..+-.+.+...-.+.++ .....+.......+ +.+|-.|..+|..
T Consensus 890 ~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~lee 961 (982)
T KOG4653|consen 890 LQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEE 961 (982)
T ss_pred HHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence 4555555543 688899999999988877655433333332 34445555555544 4455555544433
|
|
| >COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=88.57 E-value=0.44 Score=47.35 Aligned_cols=57 Identities=21% Similarity=0.357 Sum_probs=44.8
Q ss_pred ccccccCcccCCCcee-cCCCcccchHHHHHHHhcC-CCCCCC--CCCCCCCCCCcccHHH
Q 004761 239 YFRCPLSLELMIDPVI-VASGQTYERVFIQKWLDHG-LNICPK--TRQTLAHTNLIPNYTV 295 (732)
Q Consensus 239 ~f~Cpi~~~lm~dPV~-~~~g~ty~r~~I~~~~~~~-~~~cP~--~~~~l~~~~l~pn~~l 295 (732)
+.+|||++....-|++ ..|.|.|||..|.+.++.- ...||. |.|.+..+.++-.+-|
T Consensus 189 ~nrCpitl~p~~~pils~kcnh~~e~D~I~~~lq~~~trvcp~~~Csq~~~~~~~v~d~Il 249 (275)
T COG5627 189 SNRCPITLNPDFYPILSSKCNHKPEMDLINKKLQVECTRVCPRLICSQKEVVDPYVCDHIL 249 (275)
T ss_pred cccCCcccCcchhHHHHhhhcccccHHHHHHHhcCCceeecchhhcchheeccchhhhHHH
Confidence 5689999999999987 4699999999999999843 356884 6677766666655544
|
|
| >PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle | Back alignment and domain information |
|---|
Probab=88.57 E-value=2.8 Score=40.19 Aligned_cols=142 Identities=17% Similarity=0.149 Sum_probs=92.6
Q ss_pred HHHHHHHHcC--CCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhccCc-hhHHHH
Q 004761 530 IEPLIHVLKS--GNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFH-ENKARI 606 (732)
Q Consensus 530 l~~Lv~lL~~--~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~-~n~~~l 606 (732)
++.++..|.. .++++|..++-++..+- +..+....+ -+-+.+-.++..++......++.++..|-... +....+
T Consensus 5 l~~lL~~L~~~~~~~~~r~~a~v~l~k~l--~~~~~~~~~-~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l 81 (157)
T PF11701_consen 5 LDTLLTSLDMLRQPEEVRSHALVILSKLL--DAAREEFKE-KISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSEL 81 (157)
T ss_dssp CCHHHHHHHCTTTSCCHHHHHHHHHHHHH--HHHHHHHHH-HHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHH
T ss_pred HHHHHHHhcccCCCHhHHHHHHHHHHHHH--HHhHHHHHH-HHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHH
Confidence 4455555543 56788888888887773 333333322 23334444455544446777778887776644 344444
Q ss_pred -HhhchHHHHHHhc---CCChHHHHHHHHHHHHHhCChhhHHHHHHcCcHHHHHHHHhc-CCHH-HHHHHHHHHH
Q 004761 607 -IQAGAVKHLVDLM---DPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVES-GSQR-GKENAASILL 675 (732)
Q Consensus 607 -v~~G~V~~Ll~lL---~~~~~l~e~al~iL~nLa~~~~~r~~i~~~~~I~~Lv~lL~~-~s~~-~~e~A~~~L~ 675 (732)
...|..+.++.++ ..+..+...++.+|..-|.....|..|.+ .+++.|-++++. .++. .+..|+-+|.
T Consensus 82 ~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~-~~~~~L~~~~~~~~~~~~ir~~A~v~L~ 155 (157)
T PF11701_consen 82 FLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFISK-NYVSWLKELYKNSKDDSEIRVLAAVGLC 155 (157)
T ss_dssp CCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHH-HCHHHHHHHTTTCC-HH-CHHHHHHHHH
T ss_pred HhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHHH-HHHHHHHHHHccccchHHHHHHHHHHHh
Confidence 4689999999988 35667778888888888888888887776 478899888854 4444 5766666654
|
Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A. |
| >PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing | Back alignment and domain information |
|---|
Probab=88.56 E-value=18 Score=39.97 Aligned_cols=205 Identities=14% Similarity=0.141 Sum_probs=124.0
Q ss_pred CHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhc-c---CCHHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHH
Q 004761 458 SNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLY-S---EAQLTQEHAVTALLNLSINDENKAMIAEAGAIEPL 533 (732)
Q Consensus 458 ~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~-s---~~~~v~~~A~~~L~nLs~~~~~k~~i~~~g~l~~L 533 (732)
.+.+--.|+..+..+....|..-..+.++|.++.++..+. . .+.++....-.+|..||.+....+.+.+.+.++.+
T Consensus 122 G~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN~~Gl~~~~~~~~l~~~ 201 (379)
T PF06025_consen 122 GPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICLNNRGLEKVKSSNPLDKL 201 (379)
T ss_pred chHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhcCHHHHHHHHhcChHHHH
Confidence 3566778888999999888889999999999999999887 3 35677777778888899999999999999999999
Q ss_pred HHHHcCCCH-------HHHHHHHHHHHHhccC-chhHHHHHhc--chHHHHHHhhcCCCHHHHHHHHHHH----------
Q 004761 534 IHVLKSGNG-------GAKENSAAALFSLSVL-EEYKAKIGRS--GAVKALVDLLGSGTLRGRKDAATAL---------- 593 (732)
Q Consensus 534 v~lL~~~~~-------e~~~~Aa~~L~~Ls~~-~~~k~~i~~~--g~i~~Lv~lL~~~~~~~~~~Al~aL---------- 593 (732)
+.++.+... +.....-..+-.|..+ +.-|..+... ..+..++.+-+......-..+-...
T Consensus 202 f~if~s~~~~~~l~~~d~a~~lG~~~DEL~RH~p~Lk~~i~~~ii~~l~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (379)
T PF06025_consen 202 FEIFTSPDYVKALRRRDTASNLGNSFDELMRHHPSLKPDIIDAIIKILDRLVELGKDKAPECGWGAKLWTEDSQGKPVVS 281 (379)
T ss_pred HHHhCCHHHHHHhcccchHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHhcccCccccccccccccccCCCCCCC
Confidence 999876531 2222233334445543 3345554433 3444444443332211100000000
Q ss_pred ---HHhccCchhHHHHHhhc-hHHHH-H----------Hhc-C--------CChHHHHHHHHHHHHHhCChhhHHHHHHc
Q 004761 594 ---FNLSIFHENKARIIQAG-AVKHL-V----------DLM-D--------PSTGMVDKAVALLANLSTVGEGRLAIARE 649 (732)
Q Consensus 594 ---~nLs~~~~n~~~lv~~G-~V~~L-l----------~lL-~--------~~~~l~e~al~iL~nLa~~~~~r~~i~~~ 649 (732)
.+.....+. ..-...+ ..... . .-. . .-.......+..|..+-.+.+.+..+++.
T Consensus 282 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~YI~~v~rFLea~fsN~~~C~~FVe~ 360 (379)
T PF06025_consen 282 GESSAVSTDEEM-EEDVEEDDDMESVDTSSQDSTEPDSESSEDEDPDSPELPLTDYIFNVVRFLEAFFSNSDHCREFVEK 360 (379)
T ss_pred CCcccccccccc-ccccccccccccccccccCCCCCccccccccccCcccCcHHHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 000000000 0000000 00000 0 000 0 01235788888888888899999999999
Q ss_pred CcHHHHHHHHhcCC
Q 004761 650 GGIPSLVEVVESGS 663 (732)
Q Consensus 650 ~~I~~Lv~lL~~~s 663 (732)
||+..|++++..++
T Consensus 361 GGie~LLdLl~LPs 374 (379)
T PF06025_consen 361 GGIELLLDLLTLPS 374 (379)
T ss_pred CCHHHHHHHHcCCC
Confidence 99999999987543
|
This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO. |
| >KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=88.21 E-value=0.12 Score=52.26 Aligned_cols=55 Identities=15% Similarity=0.331 Sum_probs=44.0
Q ss_pred CccccccCcccCCCce----------ecCCCcccchHHHHHHHhcC-CCCCCCCCCCCCCCCCccc
Q 004761 238 PYFRCPLSLELMIDPV----------IVASGQTYERVFIQKWLDHG-LNICPKTRQTLAHTNLIPN 292 (732)
Q Consensus 238 ~~f~Cpi~~~lm~dPV----------~~~~g~ty~r~~I~~~~~~~-~~~cP~~~~~l~~~~l~pn 292 (732)
++=.|.+|++=+-+-| .++|+|.|--.||.-|.--| ..|||.|+++.+.+.+..|
T Consensus 223 ~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl~rmfsn 288 (328)
T KOG1734|consen 223 SDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRMFSN 288 (328)
T ss_pred CcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhHhhhccC
Confidence 4567999988776666 68999999999999998766 4689999988766555554
|
|
| >KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=88.13 E-value=0.12 Score=60.74 Aligned_cols=48 Identities=17% Similarity=0.334 Sum_probs=40.7
Q ss_pred cccccCcccCCCceecCCCcccchHHHHHHHhcCC-CCCCCCCCCCCCCC
Q 004761 240 FRCPLSLELMIDPVIVASGQTYERVFIQKWLDHGL-NICPKTRQTLAHTN 288 (732)
Q Consensus 240 f~Cpi~~~lm~dPV~~~~g~ty~r~~I~~~~~~~~-~~cP~~~~~l~~~~ 288 (732)
+.|+||.+ -.+||++.|||.+|+.|+.+.+.... ..||.|+..+.++.
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~ 503 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEKK 503 (674)
T ss_pred cccccccc-cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHHHH
Confidence 89999999 88999999999999999999887433 46999988776543
|
|
| >KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=88.12 E-value=0.31 Score=52.39 Aligned_cols=49 Identities=18% Similarity=0.374 Sum_probs=40.5
Q ss_pred CCccccccCcccCCCce-------ec-CCCcccchHHHHHHHhcC------CCCCCCCCCCCC
Q 004761 237 PPYFRCPLSLELMIDPV-------IV-ASGQTYERVFIQKWLDHG------LNICPKTRQTLA 285 (732)
Q Consensus 237 p~~f~Cpi~~~lm~dPV-------~~-~~g~ty~r~~I~~~~~~~------~~~cP~~~~~l~ 285 (732)
-.++.|-||++.-.+++ |+ .|.|+||-.||.+|-... ...||.||.+..
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~ 221 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS 221 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence 36899999999999998 34 599999999999998532 367999997653
|
|
| >KOG1788 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.92 E-value=14 Score=44.68 Aligned_cols=253 Identities=18% Similarity=0.186 Sum_probs=143.5
Q ss_pred HHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHHHcCCC----
Q 004761 466 AAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAMIAEAGAIEPLIHVLKSGN---- 541 (732)
Q Consensus 466 l~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k~~i~~~g~l~~Lv~lL~~~~---- 541 (732)
-.+|..+.|.+.+|...+.++.++..++.++-++ +-+...++++..|-..+..+ +....+-.++..|++|-
T Consensus 663 wDcLisllKnnteNqklFreanGvklilpflind--ehRSslLrivscLitvdpkq---vhhqelmalVdtLksgmvt~I 737 (2799)
T KOG1788|consen 663 WDCLISLLKNNTENQKLFREANGVKLILPFLIND--EHRSSLLRIVSCLITVDPKQ---VHHQELMALVDTLKSGMVTRI 737 (2799)
T ss_pred HHHHHHHHhccchhhHHHHhhcCceEEEEeeech--HHHHHHHHHHHHHhccCccc---ccHHHHHHHHHHHHhcceecc
Confidence 4578888899999999999999999888888432 22333334443333221110 01123445666676641
Q ss_pred --------HHHHHHHHHHHHHhcc-CchhHHHHHhcchHHHHHHhhcC----------CCHHHHHHHHHHHHH---h--c
Q 004761 542 --------GGAKENSAAALFSLSV-LEEYKAKIGRSGAVKALVDLLGS----------GTLRGRKDAATALFN---L--S 597 (732)
Q Consensus 542 --------~e~~~~Aa~~L~~Ls~-~~~~k~~i~~~g~i~~Lv~lL~~----------~~~~~~~~Al~aL~n---L--s 597 (732)
..+....+++++..-. +...+..+++.++...|...|.. ++.-.-..-...|+. + |
T Consensus 738 sgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLlttLhtfqgftelhdesDlcvyiklfkilFrlfTlavc 817 (2799)
T KOG1788|consen 738 SGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTLHTFQGFTELHDESDLCVYIKLFKILFRLFTLAVC 817 (2799)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHHHHHhccchhcCCchhhhhHHHHHHHHHHHHHHHHh
Confidence 2244556667776654 33456667788777766665531 122222222333332 2 3
Q ss_pred cCchhHHHHHh-------------hc---------hHHHHHHhc---CCChHHHH--HHHHHHHHH------hCChh---
Q 004761 598 IFHENKARIIQ-------------AG---------AVKHLVDLM---DPSTGMVD--KAVALLANL------STVGE--- 641 (732)
Q Consensus 598 ~~~~n~~~lv~-------------~G---------~V~~Ll~lL---~~~~~l~e--~al~iL~nL------a~~~~--- 641 (732)
.++.|+..+-. .| +|..|.++- -..+.+.. .|++.+-.+ ...|.
T Consensus 818 enasNrmklhtvITsqtftsLLresgllcvnler~viqlllElalevlvppfLtSEsaAcaeVfelednifavntPsGqf 897 (2799)
T KOG1788|consen 818 ENASNRMKLHTVITSQTFTSLLRESGLLCVNLERHVIQLLLELALEVLVPPFLTSESAACAEVFELEDNIFAVNTPSGQF 897 (2799)
T ss_pred hcchhhhheeeeeeHHHHHHHHHHhccceecchHHHHHHHHHHHHHhhCCchhhhhHHHHHHHhhcccceeeeccCCCCc
Confidence 45556543322 22 222222221 00111111 122211111 11222
Q ss_pred --hHHHHHHcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHhHHHHHhCCCHHHHHHchh---cCChHHHHHHHHHH
Q 004761 642 --GRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQ---SGTPRAKEKAQQLL 716 (732)
Q Consensus 642 --~r~~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~v~~~G~i~~L~~Ll~---~g~~~~k~kA~~lL 716 (732)
.++.|..+|++..|+..+-...++.+-.-...|-.+.+.++.+.......|.++.|++++- +|+.-.--.|..++
T Consensus 898 npdk~~iynagavRvlirslLlnypK~qlefl~lleSlaRaspfnaelltS~gcvellleIiypflsgsspfLshalkIv 977 (2799)
T KOG1788|consen 898 NPDKQKIYNAGAVRVLIRSLLLNYPKLQLEFLNLLESLARASPFNAELLTSAGCVELLLEIIYPFLSGSSPFLSHALKIV 977 (2799)
T ss_pred CchHhhhcccchhHHHHHHHHhhChHHHHHHHHHHHHHhhcCCCchhhhhcccHHHHHHHHhhhhhcCCchHhhccHHHH
Confidence 2567788899999999887778999988899999999988888888888899998888764 45544444555555
Q ss_pred HHhhccc
Q 004761 717 SHFRNQR 723 (732)
Q Consensus 717 ~~l~~~~ 723 (732)
.+|..+|
T Consensus 978 emLgayr 984 (2799)
T KOG1788|consen 978 EMLGAYR 984 (2799)
T ss_pred HHHhhcc
Confidence 5555444
|
|
| >KOG4653 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.89 E-value=26 Score=41.86 Aligned_cols=189 Identities=16% Similarity=0.125 Sum_probs=109.2
Q ss_pred cccCchHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCch
Q 004761 441 VTTTPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDEN 520 (732)
Q Consensus 441 ~~~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~ 520 (732)
..+.......+..+..+.+.++-.|+..|+.+.+.. .....+...+.+...+..|++.|+-+--+|+..+..||.-
T Consensus 723 s~~~e~~qeai~sl~d~qvpik~~gL~~l~~l~e~r-~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev--- 798 (982)
T KOG4653|consen 723 SVDIEPLQEAISSLHDDQVPIKGYGLQMLRHLIEKR-KKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV--- 798 (982)
T ss_pred cccHHHHHHHHHHhcCCcccchHHHHHHHHHHHHhc-chhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHh---
Confidence 344444667777888888889999999999999643 3445566678999999999999999988999877777632
Q ss_pred HHHHHHcCCHHHHHH-HHcCCC---HHHHHHHHHHHHHhcc-CchhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHH
Q 004761 521 KAMIAEAGAIEPLIH-VLKSGN---GGAKENSAAALFSLSV-LEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFN 595 (732)
Q Consensus 521 k~~i~~~g~l~~Lv~-lL~~~~---~e~~~~Aa~~L~~Ls~-~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~n 595 (732)
.....++.+.+ ..+..+ .+.+...--++.++.. ..+-..... .-.+...+..+++.+..-+..++.++.+
T Consensus 799 ----y~e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~-~~Li~tfl~gvrepd~~~RaSS~a~lg~ 873 (982)
T KOG4653|consen 799 ----YPEDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYK-AVLINTFLSGVREPDHEFRASSLANLGQ 873 (982)
T ss_pred ----cchhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHH-HHHHHHHHHhcCCchHHHHHhHHHHHHH
Confidence 12234555554 232211 2222222222222221 000000000 0234555556665556667788888888
Q ss_pred hccCchhHHHHHhhchHHHHHHhc--CCChHHHHHHHHHHHHHhC
Q 004761 596 LSIFHENKARIIQAGAVKHLVDLM--DPSTGMVDKAVALLANLST 638 (732)
Q Consensus 596 Ls~~~~n~~~lv~~G~V~~Ll~lL--~~~~~l~e~al~iL~nLa~ 638 (732)
||.-...+..=.=..++..++.+. +.+.-++..|+.++..+-.
T Consensus 874 Lcq~~a~~vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~ 918 (982)
T KOG4653|consen 874 LCQLLAFQVSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLN 918 (982)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHh
Confidence 876332111001122444455555 4555566777777776654
|
|
| >KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=87.85 E-value=0.15 Score=38.60 Aligned_cols=44 Identities=18% Similarity=0.305 Sum_probs=36.4
Q ss_pred ccccCcccCCCceecCCCcc-cchHHHHHHHhcCCCCCCCCCCCC
Q 004761 241 RCPLSLELMIDPVIVASGQT-YERVFIQKWLDHGLNICPKTRQTL 284 (732)
Q Consensus 241 ~Cpi~~~lm~dPV~~~~g~t-y~r~~I~~~~~~~~~~cP~~~~~l 284 (732)
.|-||.+---|-|+--|||- .|-.|=.+-+..++..||.||.|+
T Consensus 9 ECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi 53 (62)
T KOG4172|consen 9 ECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPI 53 (62)
T ss_pred ceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHH
Confidence 59999988888888899996 788887776666778999999875
|
|
| >PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A | Back alignment and domain information |
|---|
Probab=87.71 E-value=0.17 Score=41.42 Aligned_cols=47 Identities=17% Similarity=0.540 Sum_probs=23.1
Q ss_pred ccccccCcccCC-C---ceec----CCCcccchHHHHHHHhc---CC-------CCCCCCCCCCC
Q 004761 239 YFRCPLSLELMI-D---PVIV----ASGQTYERVFIQKWLDH---GL-------NICPKTRQTLA 285 (732)
Q Consensus 239 ~f~Cpi~~~lm~-d---PV~~----~~g~ty~r~~I~~~~~~---~~-------~~cP~~~~~l~ 285 (732)
+..|+||..... + |+++ .||++|=..|+.+||.. ++ .+||.|+++++
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 467999998754 2 5554 48999999999999963 11 25999998764
|
|
| >PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane | Back alignment and domain information |
|---|
Probab=87.67 E-value=1.2 Score=40.43 Aligned_cols=69 Identities=14% Similarity=0.187 Sum_probs=57.2
Q ss_pred cHHHHHHHHh-cCCHHHHHHHHHHHHHHhcCChHhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHh
Q 004761 651 GIPSLVEVVE-SGSQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHF 719 (732)
Q Consensus 651 ~I~~Lv~lL~-~~s~~~~e~A~~~L~~L~~~~~~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l 719 (732)
.+..|+++|. +.++.+..-||.=|..+++.-|..+..+-+.|+-..++.|+.+.++.+|..|..+++-+
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQkl 113 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKL 113 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 4788999984 34667777788889999998898888888899999999999999999999999888765
|
ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A. |
| >KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=87.63 E-value=0.37 Score=49.58 Aligned_cols=48 Identities=19% Similarity=0.400 Sum_probs=37.2
Q ss_pred ccccCcc-cCCCcee----cCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCC
Q 004761 241 RCPLSLE-LMIDPVI----VASGQTYERVFIQKWLDHGLNICPKTRQTLAHTN 288 (732)
Q Consensus 241 ~Cpi~~~-lm~dPV~----~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~ 288 (732)
-||+|.. .+..|-+ =+|||+.|-+|.-+-|..|...||.|+..|-...
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~n 54 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRKNN 54 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhhcc
Confidence 3788763 4444432 2799999999999999999899999999885533
|
|
| >PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain | Back alignment and domain information |
|---|
Probab=87.54 E-value=12 Score=39.96 Aligned_cols=167 Identities=14% Similarity=0.140 Sum_probs=106.3
Q ss_pred chHHHHH-HHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhc--CCchH
Q 004761 445 PYVKKLI-EDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSI--NDENK 521 (732)
Q Consensus 445 ~~i~~Lv-~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~--~~~~k 521 (732)
+.+..|| ..+.+.++.++..|+++|...+--+.+. +. ..++.+...+..++..++..|+.++..+.. +....
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~----a~-~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~ 100 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKEL----AK-EHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIF 100 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHH----HH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhc
Confidence 4455555 6778899999999999999988655421 21 346777788877899999999999988743 11111
Q ss_pred H-------HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHh-hcCC--CHHHHHHHHH
Q 004761 522 A-------MIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDL-LGSG--TLRGRKDAAT 591 (732)
Q Consensus 522 ~-------~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~l-L~~~--~~~~~~~Al~ 591 (732)
. .......++.+...|.+.+++++..|+-.++.|...+.... ...++..|+-+ .... +..-.+.++.
T Consensus 101 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~L~ 177 (298)
T PF12719_consen 101 DSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQCLS 177 (298)
T ss_pred cchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHHHH
Confidence 1 12234567778888988899999999999998865432222 12334444333 2221 2223444444
Q ss_pred H-HHHhccCchhHHHHHhhchHHHHHHhc
Q 004761 592 A-LFNLSIFHENKARIIQAGAVKHLVDLM 619 (732)
Q Consensus 592 a-L~nLs~~~~n~~~lv~~G~V~~Ll~lL 619 (732)
. +-..+..+......+..+.++.+..+.
T Consensus 178 ~Ffp~y~~s~~~~Q~~l~~~f~~~l~~~~ 206 (298)
T PF12719_consen 178 VFFPVYASSSPENQERLAEAFLPTLRTLS 206 (298)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 4 335565555445666667777777766
|
|
| >KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=87.31 E-value=0.31 Score=53.38 Aligned_cols=33 Identities=24% Similarity=0.524 Sum_probs=28.6
Q ss_pred ecCCCcccchHHHHHHHhcCCCCCCCCCCCCCC
Q 004761 254 IVASGQTYERVFIQKWLDHGLNICPKTRQTLAH 286 (732)
Q Consensus 254 ~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~ 286 (732)
++||.|.|-|.|+++|.+.-.-.||+||++|+.
T Consensus 603 ~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 603 LTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred ccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 458999999999999999655689999999864
|
|
| >PF14447 Prok-RING_4: Prokaryotic RING finger family 4 | Back alignment and domain information |
|---|
Probab=87.06 E-value=0.37 Score=36.95 Aligned_cols=46 Identities=11% Similarity=0.143 Sum_probs=33.4
Q ss_pred cccccCcccCCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCC
Q 004761 240 FRCPLSLELMIDPVIVASGQTYERVFIQKWLDHGLNICPKTRQTLAHTN 288 (732)
Q Consensus 240 f~Cpi~~~lm~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~ 288 (732)
..|=.+...=...++++|||..++.|-. -+...-||+|+.++...+
T Consensus 8 ~~~~~~~~~~~~~~~~pCgH~I~~~~f~---~~rYngCPfC~~~~~~~~ 53 (55)
T PF14447_consen 8 QPCVFCGFVGTKGTVLPCGHLICDNCFP---GERYNGCPFCGTPFEFDD 53 (55)
T ss_pred eeEEEccccccccccccccceeeccccC---hhhccCCCCCCCcccCCC
Confidence 3455566666778899999999999833 233456999999986543
|
|
| >PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division [] | Back alignment and domain information |
|---|
Probab=86.74 E-value=5.5 Score=38.92 Aligned_cols=110 Identities=16% Similarity=0.121 Sum_probs=76.9
Q ss_pred chHHHHHHHhcCCCHHHHHHHHHHHHHHhccCh-hhHHHHHhcCCHHHHHHhhcc---------CCHHHHHHHHHHHHHh
Q 004761 445 PYVKKLIEDLNSTSNEIQASAAAELRLLAKHNM-ENRMIIGNCGAIPPLLSLLYS---------EAQLTQEHAVTALLNL 514 (732)
Q Consensus 445 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~-~~r~~i~~~G~I~~Lv~lL~s---------~~~~v~~~A~~~L~nL 514 (732)
.....+++.|.+..... ..+..|+...+..+ ..-..+.+.||+..|+.+|.. .+...+..++.+|..+
T Consensus 66 ~~p~~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal 143 (187)
T PF06371_consen 66 SSPEWYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKAL 143 (187)
T ss_dssp HHHHHHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHH
Confidence 44567888887765432 44555554444433 334556678999999998852 3567888899999888
Q ss_pred hcCCchHHHHH-HcCCHHHHHHHHcCCCHHHHHHHHHHHHHhc
Q 004761 515 SINDENKAMIA-EAGAIEPLIHVLKSGNGGAKENSAAALFSLS 556 (732)
Q Consensus 515 s~~~~~k~~i~-~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls 556 (732)
..+..+...+. ..+++..|+..|.+.+..++..++-+|..++
T Consensus 144 ~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 144 MNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp TSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred HccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 77766666666 4789999999999999999999998887765
|
Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A. |
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=86.31 E-value=23 Score=43.77 Aligned_cols=95 Identities=19% Similarity=0.126 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHHhccCh-hhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhc---C-CchHHHHHHcCCHHHH
Q 004761 459 NEIQASAAAELRLLAKHNM-ENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSI---N-DENKAMIAEAGAIEPL 533 (732)
Q Consensus 459 ~~~~~~Al~~L~~La~~~~-~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~---~-~~~k~~i~~~g~l~~L 533 (732)
.+.+..|+..|..++.... +++ -.-.+|.++.++..++.+++..|+.+|..+-. + +..-..+.-.-.+|.|
T Consensus 437 ~~tK~~ALeLl~~lS~~i~de~~----LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L 512 (1431)
T KOG1240|consen 437 IQTKLAALELLQELSTYIDDEVK----LDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHL 512 (1431)
T ss_pred chhHHHHHHHHHHHhhhcchHHH----HhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhh
Confidence 4678899999999986432 222 12578999999999999999999998877632 1 1222223333467777
Q ss_pred HHHHcCCC-HHHHHHHHHHHHHhcc
Q 004761 534 IHVLKSGN-GGAKENSAAALFSLSV 557 (732)
Q Consensus 534 v~lL~~~~-~e~~~~Aa~~L~~Ls~ 557 (732)
-.++.+.+ ..+|..-|..|..|+.
T Consensus 513 ~~l~~d~~~~~vRiayAsnla~LA~ 537 (1431)
T KOG1240|consen 513 NHLLNDSSAQIVRIAYASNLAQLAK 537 (1431)
T ss_pred HhhhccCccceehhhHHhhHHHHHH
Confidence 78887633 4456555666655553
|
|
| >PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] | Back alignment and domain information |
|---|
Probab=86.28 E-value=1.2 Score=29.90 Aligned_cols=29 Identities=24% Similarity=0.235 Sum_probs=25.4
Q ss_pred hHHHHHHhhcCCCHHHHHHHHHHHHHhcc
Q 004761 570 AVKALVDLLGSGTLRGRKDAATALFNLSI 598 (732)
Q Consensus 570 ~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~ 598 (732)
.+|.+++++.+.+++++..|+.+|..++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 47899999999999999999999998864
|
Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B .... |
| >PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms | Back alignment and domain information |
|---|
Probab=85.71 E-value=32 Score=39.74 Aligned_cols=130 Identities=21% Similarity=0.230 Sum_probs=80.7
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcC-CchHHHHH
Q 004761 447 VKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSIN-DENKAMIA 525 (732)
Q Consensus 447 i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~-~~~k~~i~ 525 (732)
...++...+ ++..+++-|...|....++-|+... .+|..++.+...+|..++..|+..|-.+|.+ ++....+
T Consensus 25 y~~il~~~k-g~~k~K~Laaq~I~kffk~FP~l~~-----~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kv- 97 (556)
T PF05918_consen 25 YKEILDGVK-GSPKEKRLAAQFIPKFFKHFPDLQE-----EAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKV- 97 (556)
T ss_dssp HHHHHHGGG-S-HHHHHHHHHHHHHHHCC-GGGHH-----HHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHH-
T ss_pred HHHHHHHcc-CCHHHHHHHHHHHHHHHhhChhhHH-----HHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHH-
Confidence 455666655 4688889999999999998887544 4677899999999999999999999999986 3444443
Q ss_pred HcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhc---CCCHHHHHHHHHHHH
Q 004761 526 EAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLG---SGTLRGRKDAATALF 594 (732)
Q Consensus 526 ~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~---~~~~~~~~~Al~aL~ 594 (732)
...|+++|.+.++.-...+-.+|..|...+ . .+.+..+..-+. .++..+++.++..|.
T Consensus 98 ----aDvL~QlL~tdd~~E~~~v~~sL~~ll~~d-~------k~tL~~lf~~i~~~~~~de~~Re~~lkFl~ 158 (556)
T PF05918_consen 98 ----ADVLVQLLQTDDPVELDAVKNSLMSLLKQD-P------KGTLTGLFSQIESSKSGDEQVRERALKFLR 158 (556)
T ss_dssp ----HHHHHHHTT---HHHHHHHHHHHHHHHHH--H------HHHHHHHHHHHH---HS-HHHHHHHHHHHH
T ss_pred ----HHHHHHHHhcccHHHHHHHHHHHHHHHhcC-c------HHHHHHHHHHHHhcccCchHHHHHHHHHHH
Confidence 567889998877544433333443332211 1 134444554443 466777887777664
|
Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A. |
| >PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes | Back alignment and domain information |
|---|
Probab=85.30 E-value=12 Score=39.14 Aligned_cols=180 Identities=18% Similarity=0.168 Sum_probs=104.9
Q ss_pred HHHHhhccCCHHHHHHHHHHHHHhhcCCchHHHHHHcC--CHHHHHHHHcC----CCHHHHHHHHHHHHHhccCchhHHH
Q 004761 491 PLLSLLYSEAQLTQEHAVTALLNLSINDENKAMIAEAG--AIEPLIHVLKS----GNGGAKENSAAALFSLSVLEEYKAK 564 (732)
Q Consensus 491 ~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k~~i~~~g--~l~~Lv~lL~~----~~~e~~~~Aa~~L~~Ls~~~~~k~~ 564 (732)
.+...+.+...+-+--++-+++-+..++..-..+...+ ....+..++.. ..+..+..+++++.|+-.+...+..
T Consensus 67 ~~~~~~~~Wp~~~~fP~lDLlRl~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~~~~ 146 (268)
T PF08324_consen 67 LLLKILLSWPPESRFPALDLLRLAALHPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPGRQL 146 (268)
T ss_dssp HHHHHHCCS-CCC-HHHHHHHHHHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCCHHH
T ss_pred HHHHHHHhCCCccchhHHhHHHHHHhCccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCccHHH
Confidence 34444444333334445555555555554444444332 23444444433 3567888999999999988888888
Q ss_pred HHhc-c-hHHHHHHhhcCC----CHHHHHHHHHHHHHhccCch-hH-HHHHhhchHHHHHHhc---CCChHHHHHHHHHH
Q 004761 565 IGRS-G-AVKALVDLLGSG----TLRGRKDAATALFNLSIFHE-NK-ARIIQAGAVKHLVDLM---DPSTGMVDKAVALL 633 (732)
Q Consensus 565 i~~~-g-~i~~Lv~lL~~~----~~~~~~~Al~aL~nLs~~~~-n~-~~lv~~G~V~~Ll~lL---~~~~~l~e~al~iL 633 (732)
+... + .+-..+..+... +..++..++..++|++..-- ++ ..-....++..+++.+ ..+.+..-.++-+|
T Consensus 147 ~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvAl 226 (268)
T PF08324_consen 147 LLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLVAL 226 (268)
T ss_dssp HHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHHH
T ss_pred HHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHHHH
Confidence 7765 4 344444444443 57788889999999987421 11 1112223556666644 35788899999999
Q ss_pred HHHhCChhhHHHHHHcCcHHHHHHHH--hcCCHHHHHHH
Q 004761 634 ANLSTVGEGRLAIAREGGIPSLVEVV--ESGSQRGKENA 670 (732)
Q Consensus 634 ~nLa~~~~~r~~i~~~~~I~~Lv~lL--~~~s~~~~e~A 670 (732)
++|+..+.........-++...+... ....++.++.+
T Consensus 227 GtL~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~ri~~v~ 265 (268)
T PF08324_consen 227 GTLLSSSDSAKQLAKSLDVKSVLSKKANKSKEPRIKEVA 265 (268)
T ss_dssp HHHHCCSHHHHHHCCCCTHHHHHHHHHHHTTSHHHHHHH
T ss_pred HHHhccChhHHHHHHHcChHHHHHHHHhcccchHHHHHh
Confidence 99997776665555533344333332 23455555544
|
It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A. |
| >PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 | Back alignment and domain information |
|---|
Probab=85.20 E-value=6.9 Score=38.24 Aligned_cols=92 Identities=20% Similarity=0.170 Sum_probs=70.6
Q ss_pred CHHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHHhcchH-HHHHHhh
Q 004761 500 AQLTQEHAVTALLNLSINDENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRSGAV-KALVDLL 578 (732)
Q Consensus 500 ~~~v~~~A~~~L~nLs~~~~~k~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i-~~Lv~lL 578 (732)
|+.++.+++.+++-|+..-.+ +++ ..++.+...|+++++.+|..|+.+|..|...+- +-..|-+ ..++.++
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~---~ve-~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~----ik~k~~l~~~~l~~l 72 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPN---LVE-PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDM----IKVKGQLFSRILKLL 72 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcH---HHH-hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCc----eeehhhhhHHHHHHH
Confidence 567889999999988754222 222 358889999999999999999999999976432 2222333 7777888
Q ss_pred cCCCHHHHHHHHHHHHHhccC
Q 004761 579 GSGTLRGRKDAATALFNLSIF 599 (732)
Q Consensus 579 ~~~~~~~~~~Al~aL~nLs~~ 599 (732)
.+.++.++..|..++..+...
T Consensus 73 ~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 73 VDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred cCCCHHHHHHHHHHHHHHHHh
Confidence 899999999999999988765
|
|
| >KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=84.88 E-value=32 Score=40.51 Aligned_cols=146 Identities=18% Similarity=0.241 Sum_probs=77.5
Q ss_pred HHHHcCCCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhc-----C------CCHHHHHHHHHHHHHhccCchh
Q 004761 534 IHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLG-----S------GTLRGRKDAATALFNLSIFHEN 602 (732)
Q Consensus 534 v~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~-----~------~~~~~~~~Al~aL~nLs~~~~n 602 (732)
+.+|..++-+++..+..+...|.... -+.-++.+|+ + .+..-+..-+++|...+..-+.
T Consensus 323 LrvLss~dldvr~Ktldi~ldLvssr----------Nvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~ 392 (948)
T KOG1058|consen 323 LRVLSSPDLDVRSKTLDIALDLVSSR----------NVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPE 392 (948)
T ss_pred HHHcCcccccHHHHHHHHHHhhhhhc----------cHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChH
Confidence 34455556666666666655554432 2333444443 1 1223355566677776653211
Q ss_pred HHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHH-hCChhhHHHHHHcCcHHHHHHHHhc-CCHHHHHHHHHHHHHHhc
Q 004761 603 KARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANL-STVGEGRLAIAREGGIPSLVEVVES-GSQRGKENAASILLQLCL 679 (732)
Q Consensus 603 ~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nL-a~~~~~r~~i~~~~~I~~Lv~lL~~-~s~~~~e~A~~~L~~L~~ 679 (732)
+.+.+|+.|++++ +.+....-..+..+... -..|.-|..+ +..+++-+.. .+.+.-+.|+|++..-|.
T Consensus 393 ----~aatvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~Lr~~i-----i~~l~~~~~~irS~ki~rgalwi~GeYce 463 (948)
T KOG1058|consen 393 ----VAATVVSLLLDFISDSNEAAASDVLMFVREAIEKFPNLRASI-----IEKLLETFPQIRSSKICRGALWILGEYCE 463 (948)
T ss_pred ----HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCchHHHHH-----HHHHHHhhhhhcccccchhHHHHHHHHHh
Confidence 4467899999999 55554433334333322 2233334433 3344443321 356778889999999998
Q ss_pred CChHhHH--HHHh--CCCHHHHH
Q 004761 680 HSPKFCT--LVLQ--EGAVPPLV 698 (732)
Q Consensus 680 ~~~~~~~--~v~~--~G~i~~L~ 698 (732)
...+... ..++ .|-+|.+.
T Consensus 464 ~~~~i~~~~k~i~~slGEvp~~~ 486 (948)
T KOG1058|consen 464 GLSEIQSVIKIIRQSLGEVPIVC 486 (948)
T ss_pred hhHHHHHHHHHHHHhccccceeh
Confidence 6543222 3333 46666543
|
|
| >COG5175 MOT2 Transcriptional repressor [Transcription] | Back alignment and domain information |
|---|
Probab=84.68 E-value=0.57 Score=48.91 Aligned_cols=50 Identities=22% Similarity=0.353 Sum_probs=35.9
Q ss_pred CccccccCcccCC--Cceec--CCCcccchHHHHHHHhcCCCCCCCCCCCCCCCC
Q 004761 238 PYFRCPLSLELMI--DPVIV--ASGQTYERVFIQKWLDHGLNICPKTRQTLAHTN 288 (732)
Q Consensus 238 ~~f~Cpi~~~lm~--dPV~~--~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~ 288 (732)
+++ ||+|.+.|. |-=.. +||...||-|....-+.=+..||.||..+++..
T Consensus 14 ed~-cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~den 67 (480)
T COG5175 14 EDY-CPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDEN 67 (480)
T ss_pred ccc-CcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccccc
Confidence 455 999999885 33333 589998998865544433568999999988754
|
|
| >KOG0825 consensus PHD Zn-finger protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.37 E-value=0.24 Score=56.95 Aligned_cols=47 Identities=17% Similarity=0.359 Sum_probs=36.9
Q ss_pred ccccccCcccCCCceec---CCCcccchHHHHHHHhcCCCCCCCCCCCCCC
Q 004761 239 YFRCPLSLELMIDPVIV---ASGQTYERVFIQKWLDHGLNICPKTRQTLAH 286 (732)
Q Consensus 239 ~f~Cpi~~~lm~dPV~~---~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~ 286 (732)
.-.||+|..-+.|-.+. .|||.||.+||..|-.-. .+||.|+..|..
T Consensus 123 ~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~a-qTCPiDR~EF~~ 172 (1134)
T KOG0825|consen 123 ENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCA-QTCPVDRGEFGE 172 (1134)
T ss_pred hhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhc-ccCchhhhhhhe
Confidence 34688888888888763 589999999999998754 689999877654
|
|
| >KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=84.03 E-value=0.54 Score=53.12 Aligned_cols=59 Identities=22% Similarity=0.424 Sum_probs=41.1
Q ss_pred ccccccCcccC----CCceecCCCcccchHHHHHHHhcCCCCCCCCC--CC--CCCCCCcccHHHHHHHH
Q 004761 239 YFRCPLSLELM----IDPVIVASGQTYERVFIQKWLDHGLNICPKTR--QT--LAHTNLIPNYTVKAMIE 300 (732)
Q Consensus 239 ~f~Cpi~~~lm----~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~~~--~~--l~~~~l~pn~~l~~~i~ 300 (732)
-++|+||..+| ..||.+-||||.||.|.+.-.+. +||.-+ -. ...++..-|++|-+.+.
T Consensus 11 ~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn~---scp~~~De~~~~~~~~e~p~n~alL~~~~ 77 (861)
T KOG3161|consen 11 LLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYNA---SCPTKRDEDSSLMQLKEEPRNYALLRREH 77 (861)
T ss_pred HhhchHHHHHHHHHhcCcccccccchHHHHHHHhHhhc---cCCCCccccchhcChhhcchhHHHHHhhc
Confidence 46799997766 47999999999999999987754 577211 11 12245666777766654
|
|
| >COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=83.77 E-value=0.77 Score=37.79 Aligned_cols=43 Identities=33% Similarity=0.615 Sum_probs=31.3
Q ss_pred ccccCcccCC----Cceec-CCCcccchHHHHHHHhcCCCCCCCCCCCC
Q 004761 241 RCPLSLELMI----DPVIV-ASGQTYERVFIQKWLDHGLNICPKTRQTL 284 (732)
Q Consensus 241 ~Cpi~~~lm~----dPV~~-~~g~ty~r~~I~~~~~~~~~~cP~~~~~l 284 (732)
.||=|.-=|. =||+- -|.|.|--.||.+|++.. ..||.++|+.
T Consensus 33 ~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk-~~CPld~q~w 80 (88)
T COG5194 33 TCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTK-GVCPLDRQTW 80 (88)
T ss_pred cCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhC-CCCCCCCcee
Confidence 3555554341 13443 589999999999999974 7899999875
|
|
| >KOG0915 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=83.73 E-value=16 Score=46.15 Aligned_cols=223 Identities=17% Similarity=0.140 Sum_probs=115.3
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHh-cCCHHHHHHhhccCCHHHHHHHHHHHHHhh-c-CCchHHHH
Q 004761 448 KKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGN-CGAIPPLLSLLYSEAQLTQEHAVTALLNLS-I-NDENKAMI 524 (732)
Q Consensus 448 ~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~-~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs-~-~~~~k~~i 524 (732)
..|...+.+++++.+..++--|-.+.++-...+..... .........+|...|.-+|+.|.+-|.-.- . +...++.+
T Consensus 821 ~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelgd~~~k~~L 900 (1702)
T KOG0915|consen 821 KLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELGDSSLKKSL 900 (1702)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecCCchhHHHH
Confidence 34556667889998877665554444332222222221 233467788888888888888887765331 1 23334444
Q ss_pred HHcCCHHHHHHHHcCCC-------HHHHHHHHH---------------HHHHhccCchhHHHHHhcchHHHHHHhhcCC-
Q 004761 525 AEAGAIEPLIHVLKSGN-------GGAKENSAA---------------ALFSLSVLEEYKAKIGRSGAVKALVDLLGSG- 581 (732)
Q Consensus 525 ~~~g~l~~Lv~lL~~~~-------~e~~~~Aa~---------------~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~- 581 (732)
+ +.|+.-|..|. .++....-+ =|++|+. .++....|-..+++-++.
T Consensus 901 V-----~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LAS------dl~qPdLVYKFM~LAnh~A 969 (1702)
T KOG0915|consen 901 V-----DSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLAS------DLGQPDLVYKFMQLANHNA 969 (1702)
T ss_pred H-----HHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHh------hcCChHHHHHHHHHhhhhc
Confidence 3 33444333221 111111111 2223322 222334555556665543
Q ss_pred CHHHHHHHHHHHHHhccCchhHHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCChhhH-HHHHHcCcHHHHHHHH
Q 004761 582 TLRGRKDAATALFNLSIFHENKARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGEGR-LAIAREGGIPSLVEVV 659 (732)
Q Consensus 582 ~~~~~~~Al~aL~nLs~~~~n~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~~r-~~i~~~~~I~~Lv~lL 659 (732)
....++-|+.-+..|+.....+.+=.-.-.||.|.++= +++..++.....+-..|...+... .... ...+.-|+.-+
T Consensus 970 ~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~-neIl~eLL~~l 1048 (1702)
T KOG0915|consen 970 TWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYL-NEILDELLVNL 1048 (1702)
T ss_pred hhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHH-HHHHHHHHHhc
Confidence 23445555555555544332222112234677777776 788877665555555555543221 1111 12344444445
Q ss_pred hcCCHHHHHHHHHHHHHHhcCCh
Q 004761 660 ESGSQRGKENAASILLQLCLHSP 682 (732)
Q Consensus 660 ~~~s~~~~e~A~~~L~~L~~~~~ 682 (732)
-+..=++||.+|.+|..|..+.+
T Consensus 1049 t~kewRVReasclAL~dLl~g~~ 1071 (1702)
T KOG0915|consen 1049 TSKEWRVREASCLALADLLQGRP 1071 (1702)
T ss_pred cchhHHHHHHHHHHHHHHHcCCC
Confidence 44556799999999999998643
|
|
| >KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=83.64 E-value=1.1e+02 Score=37.71 Aligned_cols=241 Identities=18% Similarity=0.165 Sum_probs=128.7
Q ss_pred CchHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcc-CCHHHHHHHHHHHHHhhcCCchHH
Q 004761 444 TPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYS-EAQLTQEHAVTALLNLSINDENKA 522 (732)
Q Consensus 444 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s-~~~~v~~~A~~~L~nLs~~~~~k~ 522 (732)
+..+..|++.|++.+..++-.|++.+..++...+ ..+++ ..|...+.++.- ++...--.|+.+|..|+.-.--..
T Consensus 340 E~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp---~~Lad-~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlp 415 (1133)
T KOG1943|consen 340 EFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLP---PELAD-QVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLP 415 (1133)
T ss_pred HHHHHHHHHhccCCcchhhHHHHHHHHHHHccCc---HHHHH-HHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcch
Confidence 4566778888888888888999999999998877 22332 345556665543 234555578888888875321111
Q ss_pred HHHHcCCHHHHHHHHcC----C----CHHHHHHHHHHHHHhccCchhHH--HHHhcchHH-HHHHhhcCCCHHHHHHHHH
Q 004761 523 MIAEAGAIEPLIHVLKS----G----NGGAKENSAAALFSLSVLEEYKA--KIGRSGAVK-ALVDLLGSGTLRGRKDAAT 591 (732)
Q Consensus 523 ~i~~~g~l~~Lv~lL~~----~----~~e~~~~Aa~~L~~Ls~~~~~k~--~i~~~g~i~-~Lv~lL~~~~~~~~~~Al~ 591 (732)
... ...++.++.-|.- | ...+|..|+.++|.++...+... .+.. .... .|...+-+.....+++|..
T Consensus 416 s~l-~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~-~L~s~LL~~AlFDrevncRRAAsA 493 (1133)
T KOG1943|consen 416 SLL-EDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQ-SLASALLIVALFDREVNCRRAASA 493 (1133)
T ss_pred HHH-HHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHH-HHHHHHHHHHhcCchhhHhHHHHH
Confidence 110 1234444444431 1 24588888888888876332221 1111 1112 2223344566778888888
Q ss_pred HHHHhccCchhHHHHHhhchHHHHHHhc---C-CChHHHHHHHHHHH-HHhCChhhHHHHHHcCcHHHHHHHHhcCCHHH
Q 004761 592 ALFNLSIFHENKARIIQAGAVKHLVDLM---D-PSTGMVDKAVALLA-NLSTVGEGRLAIAREGGIPSLVEVVESGSQRG 666 (732)
Q Consensus 592 aL~nLs~~~~n~~~lv~~G~V~~Ll~lL---~-~~~~l~e~al~iL~-nLa~~~~~r~~i~~~~~I~~Lv~lL~~~s~~~ 666 (732)
|+.....-..|. |.=++++ + -.-..+.++-..|. .++..+..+..+.++ .+.+.+.+-+...
T Consensus 494 AlqE~VGR~~n~---------p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~----L~t~Kv~HWd~~i 560 (1133)
T KOG1943|consen 494 ALQENVGRQGNF---------PHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNH----LLTKKVCHWDVKI 560 (1133)
T ss_pred HHHHHhccCCCC---------CCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHH----HHhcccccccHHH
Confidence 887654433332 1111111 0 00111122222221 123333333332221 1112245568889
Q ss_pred HHHHHHHHHHHhcCChHhHHHHHhCCCHHHHHHchhcCChH
Q 004761 667 KENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPR 707 (732)
Q Consensus 667 ~e~A~~~L~~L~~~~~~~~~~v~~~G~i~~L~~Ll~~g~~~ 707 (732)
++.|+++|..|....|+ ....+.+++|+.-..+++..
T Consensus 561 relaa~aL~~Ls~~~pk----~~a~~~L~~lld~~ls~~~~ 597 (1133)
T KOG1943|consen 561 RELAAYALHKLSLTEPK----YLADYVLPPLLDSTLSKDAS 597 (1133)
T ss_pred HHHHHHHHHHHHHhhHH----hhcccchhhhhhhhcCCChH
Confidence 99999999998775544 34456677777766666644
|
|
| >PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins | Back alignment and domain information |
|---|
Probab=83.45 E-value=32 Score=38.51 Aligned_cols=185 Identities=15% Similarity=0.100 Sum_probs=111.2
Q ss_pred hHHHHHHHhc-CCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhh-ccCCHHHHHHHHHHHHHhhcCCchHHH
Q 004761 446 YVKKLIEDLN-STSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLL-YSEAQLTQEHAVTALLNLSINDENKAM 523 (732)
Q Consensus 446 ~i~~Lv~~L~-s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL-~s~~~~v~~~A~~~L~nLs~~~~~k~~ 523 (732)
.+..++.... ..++..+..++..+..+.-.-+..- . . ...+..+...+ ...+...+..++.++..+. |..
T Consensus 190 ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~-~-l-~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~-----KaL 261 (415)
T PF12460_consen 190 LLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDD-D-L-DEFLDSLLQSISSSEDSELRPQALEILIWIT-----KAL 261 (415)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChh-h-H-HHHHHHHHhhhcccCCcchhHHHHHHHHHHH-----HHH
Confidence 5667777654 4456777888888888874421110 0 0 12233333333 2334445555555554443 122
Q ss_pred HHH-----cCCHHHHHHHHcCCCHHHHHHHHHHHHHhccC-ch--------hHHHHHhc----chHHHHHHhhcCCCHHH
Q 004761 524 IAE-----AGAIEPLIHVLKSGNGGAKENSAAALFSLSVL-EE--------YKAKIGRS----GAVKALVDLLGSGTLRG 585 (732)
Q Consensus 524 i~~-----~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~-~~--------~k~~i~~~----g~i~~Lv~lL~~~~~~~ 585 (732)
+++ ...+..|+.+|.+ +++...|+..+.-|..+ ++ +-..+.+. ..+|.|++-.+..+...
T Consensus 262 v~R~~~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~ 339 (415)
T PF12460_consen 262 VMRGHPLATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEI 339 (415)
T ss_pred HHcCCchHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhh
Confidence 221 1246667777766 55667777777776554 22 11222221 46788888888777778
Q ss_pred HHHHHHHHHHhccCchhHHHHHh-hchHHHHHHhc-CCChHHHHHHHHHHHHHhCCh
Q 004761 586 RKDAATALFNLSIFHENKARIIQ-AGAVKHLVDLM-DPSTGMVDKAVALLANLSTVG 640 (732)
Q Consensus 586 ~~~Al~aL~nLs~~~~n~~~lv~-~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~ 640 (732)
+..-+.||.++..+-+....+-+ ..++|.|++-| .++..+...++.+|..+....
T Consensus 340 k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 340 KSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA 396 (415)
T ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence 88899999999886553332223 45788888888 567778889999999887755
|
MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription []. |
| >COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.05 E-value=0.53 Score=55.41 Aligned_cols=46 Identities=17% Similarity=0.460 Sum_probs=34.7
Q ss_pred cccccCcccCC--C---ceec--CCCcccchHHHHHHHhc-CCCCCCCCCCCCC
Q 004761 240 FRCPLSLELMI--D---PVIV--ASGQTYERVFIQKWLDH-GLNICPKTRQTLA 285 (732)
Q Consensus 240 f~Cpi~~~lm~--d---PV~~--~~g~ty~r~~I~~~~~~-~~~~cP~~~~~l~ 285 (732)
=.|+||..+.. | |--. .|.|.|--+|+-+||.. ++.+||.||..++
T Consensus 1470 eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1470 EECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred chhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 35999999865 3 3222 26788999999999985 5679999996553
|
|
| >PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II | Back alignment and domain information |
|---|
Probab=82.82 E-value=58 Score=34.04 Aligned_cols=213 Identities=19% Similarity=0.094 Sum_probs=122.7
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcc--CCHHHHHHHHHHHHHhhcCCchHHHHHHc
Q 004761 450 LIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYS--EAQLTQEHAVTALLNLSINDENKAMIAEA 527 (732)
Q Consensus 450 Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s--~~~~v~~~A~~~L~nLs~~~~~k~~i~~~ 527 (732)
|=..|.+.++..|.+|+..|......-+... ....-+..|+.++.+ .|......++..|..|.......... ..
T Consensus 4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~---L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~~~-~~ 79 (262)
T PF14500_consen 4 LGEYLTSEDPIIRAKALELLSEVLERLPPDF---LSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSPES-AV 79 (262)
T ss_pred hhhhhCCCCHHHHHHHHHHHHHHHHhCCHhh---ccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCChhh-HH
Confidence 3456778888899999999887765543221 122336677777643 46666655566666555322211111 01
Q ss_pred CCHHHHHHHHc--CCCHHHHHHHHHHHHHhccCchhHHHHHh--cchHHHHHHhhcC-CCHHHHHHHHHHHHHhccCchh
Q 004761 528 GAIEPLIHVLK--SGNGGAKENSAAALFSLSVLEEYKAKIGR--SGAVKALVDLLGS-GTLRGRKDAATALFNLSIFHEN 602 (732)
Q Consensus 528 g~l~~Lv~lL~--~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~--~g~i~~Lv~lL~~-~~~~~~~~Al~aL~nLs~~~~n 602 (732)
..+..+.+-.+ .-....|.....+|..|... ....+.. .+.+..+++++.. .+|+....+...+..+...-+.
T Consensus 80 ~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~--~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~ 157 (262)
T PF14500_consen 80 KILRSLFQNVDVQSLPQSTRYAVYQLLDSLLEN--HREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDI 157 (262)
T ss_pred HHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHH--hHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccc
Confidence 11222222111 11245677777777776543 3333332 2578888888875 4799888888888777553332
Q ss_pred HHHHHhhchHHHHHHhc--------CC---Ch-HH-H-HHHHHHHHHHhCChhhHHHHHHcCcHHHHHHHHhcCCHHHHH
Q 004761 603 KARIIQAGAVKHLVDLM--------DP---ST-GM-V-DKAVALLANLSTVGEGRLAIAREGGIPSLVEVVESGSQRGKE 668 (732)
Q Consensus 603 ~~~lv~~G~V~~Ll~lL--------~~---~~-~l-~-e~al~iL~nLa~~~~~r~~i~~~~~I~~Lv~lL~~~s~~~~e 668 (732)
...+.-+.+.+ .+ ++ ++ . +...++...|+.++.- ..-++|.|++.|.++++.+|.
T Consensus 158 ------~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~f-----a~~~~p~LleKL~s~~~~~K~ 226 (262)
T PF14500_consen 158 ------SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLF-----APFAFPLLLEKLDSTSPSVKL 226 (262)
T ss_pred ------chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhh-----HHHHHHHHHHHHcCCCcHHHH
Confidence 22333344433 11 11 12 2 2333444456655532 234799999999999999999
Q ss_pred HHHHHHHHHhc
Q 004761 669 NAASILLQLCL 679 (732)
Q Consensus 669 ~A~~~L~~L~~ 679 (732)
.++.+|...+.
T Consensus 227 D~L~tL~~c~~ 237 (262)
T PF14500_consen 227 DSLQTLKACIE 237 (262)
T ss_pred HHHHHHHHHHH
Confidence 99999988665
|
|
| >KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=82.15 E-value=0.53 Score=38.38 Aligned_cols=49 Identities=29% Similarity=0.365 Sum_probs=34.1
Q ss_pred CCccccccCcccCCC-ceec-CCCcccchHHHHHHHhcC--CCCCCCCCCCCC
Q 004761 237 PPYFRCPLSLELMID-PVIV-ASGQTYERVFIQKWLDHG--LNICPKTRQTLA 285 (732)
Q Consensus 237 p~~f~Cpi~~~lm~d-PV~~-~~g~ty~r~~I~~~~~~~--~~~cP~~~~~l~ 285 (732)
|-+=.||-|.-.=.| |.++ -|.|.|-+.||.+|+... ...||.|||...
T Consensus 29 ~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 29 PFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred ccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 444455555544333 5555 589999999999999742 357999999764
|
|
| >COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.00 E-value=20 Score=36.08 Aligned_cols=146 Identities=14% Similarity=0.033 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHHHcCC-----CHHHHHHHHHHHHHhccCchh--HHHHHhcchHHHH
Q 004761 502 LTQEHAVTALLNLSINDENKAMIAEAGAIEPLIHVLKSG-----NGGAKENSAAALFSLSVLEEY--KAKIGRSGAVKAL 574 (732)
Q Consensus 502 ~v~~~A~~~L~nLs~~~~~k~~i~~~g~l~~Lv~lL~~~-----~~e~~~~Aa~~L~~Ls~~~~~--k~~i~~~g~i~~L 574 (732)
.-..+|+.+|.-++.+++.|..+.++..--.|...|... .+-.|..+++++..|..+++. ...+....++|.+
T Consensus 115 nRvcnaL~lLQclaShPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLc 194 (315)
T COG5209 115 NRVCNALNLLQCLASHPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLC 194 (315)
T ss_pred hHHHHHHHHHHHHhcCcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHH
Confidence 345778888888888899998888775433344555432 245788999999999876543 2334456899999
Q ss_pred HHhhcCCCHHHHHHHHHHHHHhccCchhHHHHH-------h-hchHHHHHHhc--CCChHHHHHHHHHHHHHhCChhhHH
Q 004761 575 VDLLGSGTLRGRKDAATALFNLSIFHENKARII-------Q-AGAVKHLVDLM--DPSTGMVDKAVALLANLSTVGEGRL 644 (732)
Q Consensus 575 v~lL~~~~~~~~~~Al~aL~nLs~~~~n~~~lv-------~-~G~V~~Ll~lL--~~~~~l~e~al~iL~nLa~~~~~r~ 644 (732)
+.++..++.-.+..|+.++..+..++..-.-+. . ..++..++.-+ .....+...++.+--.|+..+..|.
T Consensus 195 LrIme~gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~p~aR~ 274 (315)
T COG5209 195 LRIMELGSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDKPHARA 274 (315)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCCHhHHH
Confidence 999999988888888888877766654322222 1 12223333333 3455677777777777888887776
Q ss_pred HHH
Q 004761 645 AIA 647 (732)
Q Consensus 645 ~i~ 647 (732)
.+.
T Consensus 275 lL~ 277 (315)
T COG5209 275 LLS 277 (315)
T ss_pred HHh
Confidence 654
|
|
| >KOG0567 consensus HEAT repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.93 E-value=55 Score=33.96 Aligned_cols=198 Identities=20% Similarity=0.186 Sum_probs=114.3
Q ss_pred ccCchHHHHHHHhcCC--CHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCc
Q 004761 442 TTTPYVKKLIEDLNST--SNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDE 519 (732)
Q Consensus 442 ~~~~~i~~Lv~~L~s~--~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~ 519 (732)
.+...++.|+..|... .+-++.+|..+|..+. . .+..+.|-++.+.+-..+.+.+..++..+-.-+.
T Consensus 64 ~~~~Av~~l~~vl~desq~pmvRhEAaealga~~-~----------~~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~ 132 (289)
T KOG0567|consen 64 QDEDAVPVLVEVLLDESQEPMVRHEAAEALGAIG-D----------PESLEILTKYIKDPCKEVRETCELAIKRLEWKDI 132 (289)
T ss_pred ccchhhHHHHHHhcccccchHHHHHHHHHHHhhc-c----------hhhHHHHHHHhcCCccccchHHHHHHHHHHHhhc
Confidence 3456689999888744 4566678888887765 2 2345556666655556666666666665532110
Q ss_pred -----hHHHH--------HHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCCCHHH
Q 004761 520 -----NKAMI--------AEAGAIEPLIHVLKSGN-GGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRG 585 (732)
Q Consensus 520 -----~k~~i--------~~~g~l~~Lv~lL~~~~-~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~ 585 (732)
+.... ...+-+..|-..|...+ +....+ .++|+|-. ++...+|..|++=+..++.-.
T Consensus 133 ~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry--~amF~LRn-------~g~EeaI~al~~~l~~~Salf 203 (289)
T KOG0567|consen 133 IDKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERY--RAMFYLRN-------IGTEEAINALIDGLADDSALF 203 (289)
T ss_pred cccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHH--hhhhHhhc-------cCcHHHHHHHHHhcccchHHH
Confidence 00000 01122333333333222 111111 22222211 122246677777777777777
Q ss_pred HHHHHHHHHHhccCchhHHHHHhhchHHHHHHhc---CCChHHHHHHHHHHHHHhCChhhHHHHHHcCcHHHHHHHHhcC
Q 004761 586 RKDAATALFNLSIFHENKARIIQAGAVKHLVDLM---DPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVESG 662 (732)
Q Consensus 586 ~~~Al~aL~nLs~~~~n~~~lv~~G~V~~Ll~lL---~~~~~l~e~al~iL~nLa~~~~~r~~i~~~~~I~~Lv~lL~~~ 662 (732)
+..++.++..| ...-+|+.|.+.| ..++-++-.|+.+|+.++. ...+..|.+++...
T Consensus 204 rhEvAfVfGQl----------~s~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~----------e~~~~vL~e~~~D~ 263 (289)
T KOG0567|consen 204 RHEVAFVFGQL----------QSPAAIPSLIKVLLDETEHPMVRHEAAEALGAIAD----------EDCVEVLKEYLGDE 263 (289)
T ss_pred HHHHHHHHhhc----------cchhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC----------HHHHHHHHHHcCCc
Confidence 77787777655 3334788888888 3455667778888877654 24577888888888
Q ss_pred CHHHHHHHHHHHHHHhc
Q 004761 663 SQRGKENAASILLQLCL 679 (732)
Q Consensus 663 s~~~~e~A~~~L~~L~~ 679 (732)
++-+++.|..+|--+-.
T Consensus 264 ~~vv~esc~valdm~ey 280 (289)
T KOG0567|consen 264 ERVVRESCEVALDMLEY 280 (289)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88888888777755433
|
|
| >KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure] | Back alignment and domain information |
|---|
Probab=81.88 E-value=56 Score=39.37 Aligned_cols=223 Identities=13% Similarity=0.064 Sum_probs=132.9
Q ss_pred CCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhc-cCCHHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHH
Q 004761 456 STSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLY-SEAQLTQEHAVTALLNLSINDENKAMIAEAGAIEPLI 534 (732)
Q Consensus 456 s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~-s~~~~v~~~A~~~L~nLs~~~~~k~~i~~~g~l~~Lv 534 (732)
+..|....+|...+...++...-+...+. -++...++.+. +..+-++..|++++.--+.. ....-...+.++.|.
T Consensus 461 ~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~--~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~--~vl~~~~p~ild~L~ 536 (1005)
T KOG2274|consen 461 QESPFLLLRAFLTISKFSSSTVINPQLLQ--HFLNATVNALTMDVPPPVKISAVRAFCGYCKV--KVLLSLQPMILDGLL 536 (1005)
T ss_pred ccCHHHHHHHHHHHHHHHhhhccchhHHH--HHHHHHHHhhccCCCCchhHHHHHHHHhccCc--eeccccchHHHHHHH
Confidence 34455555666666655543222221111 12222333333 23344566666666544411 000111356777888
Q ss_pred HHHcCCCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhc--CCCHHHHHHHHHHHHHhccCchhHHHHHhhchH
Q 004761 535 HVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLG--SGTLRGRKDAATALFNLSIFHENKARIIQAGAV 612 (732)
Q Consensus 535 ~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~--~~~~~~~~~Al~aL~nLs~~~~n~~~lv~~G~V 612 (732)
++....+.++...-.-+|+..+..+.-...-..+-+.|..+.+.- +++|.+...+--++..|+....|...+. .-.+
T Consensus 537 qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~m~-e~~i 615 (1005)
T KOG2274|consen 537 QLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYGPMQ-ERLI 615 (1005)
T ss_pred HHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcchH-HHHH
Confidence 888777788877777888877776655555555567777776643 3567777777777777776444433333 3578
Q ss_pred HHHHHhc-CC----ChHHHHHHHHHHHHHhCChh--hHHHHHHcCcHHHHHHH-HhcCCHHHHHHHHHHHHHHhcCChHh
Q 004761 613 KHLVDLM-DP----STGMVDKAVALLANLSTVGE--GRLAIAREGGIPSLVEV-VESGSQRGKENAASILLQLCLHSPKF 684 (732)
Q Consensus 613 ~~Ll~lL-~~----~~~l~e~al~iL~nLa~~~~--~r~~i~~~~~I~~Lv~l-L~~~s~~~~e~A~~~L~~L~~~~~~~ 684 (732)
|.++..| .+ ...+...++.+|..+.+..+ --..+.. -+.|.+.+. +++++...-.++-.+|..+...+.+.
T Consensus 616 Pslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~-~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~eq 694 (1005)
T KOG2274|consen 616 PSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLIC-YAFPAVAKITLHSDDHETLQNATECLRALISVTLEQ 694 (1005)
T ss_pred HHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHH-HHhHHhHhheeecCChHHHHhHHHHHHHHHhcCHHH
Confidence 9999998 32 36778888889987766432 1222222 256777774 57778888888999998888866553
|
|
| >PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=81.60 E-value=4.2 Score=41.35 Aligned_cols=127 Identities=18% Similarity=0.170 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHHhccCch--hHHHHHhhchHHHHHHhc-C-------C--------ChHHHHHHHHHHHHHhCChhhHH
Q 004761 583 LRGRKDAATALFNLSIFHE--NKARIIQAGAVKHLVDLM-D-------P--------STGMVDKAVALLANLSTVGEGRL 644 (732)
Q Consensus 583 ~~~~~~Al~aL~nLs~~~~--n~~~lv~~G~V~~Ll~lL-~-------~--------~~~l~e~al~iL~nLa~~~~~r~ 644 (732)
...+++|+..|.|++..=+ .-..-+..-++..|+... . + .-.-+..|+.+|+.|+-...+..
T Consensus 80 ~~lREnalV~laNisgqLdLs~~~e~I~~PildGLLHWaVcpsa~A~Dpfp~~~~~~~lSPqrlaLEaLcKLsV~e~NVD 159 (257)
T PF12031_consen 80 EQLRENALVTLANISGQLDLSDYPESIARPILDGLLHWAVCPSAEAQDPFPTAGPHSPLSPQRLALEALCKLSVIENNVD 159 (257)
T ss_pred HHHhhcceEeeeeeeeeeecccCchHHHHHHHHHHHHHHhccchhccCCCCCCCCCCCCCHHHHHHHHHHHhheeccCcc
Confidence 3567788888888876321 111222233344444443 1 1 12347889999999998877766
Q ss_pred HHHHcCc-------HHHHHHHH-hcCCHHHHHHHHHHHHHHhcCChHhHH-HHHhCCCHHHHHHchhcCChHHH
Q 004761 645 AIAREGG-------IPSLVEVV-ESGSQRGKENAASILLQLCLHSPKFCT-LVLQEGAVPPLVGLSQSGTPRAK 709 (732)
Q Consensus 645 ~i~~~~~-------I~~Lv~lL-~~~s~~~~e~A~~~L~~L~~~~~~~~~-~v~~~G~i~~L~~Ll~~g~~~~k 709 (732)
-+..++- +..|++++ .++++..+|.|+.+|.+||..+...+. ...+.+.|..|+..+......+.
T Consensus 160 liLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i~~Li~FiE~a~~~~~ 233 (257)
T PF12031_consen 160 LILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCISHLIAFIEDAEQNAH 233 (257)
T ss_pred eeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Confidence 6666553 33344444 346788999999999999998877664 44578999999999987654443
|
This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM. |
| >PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] | Back alignment and domain information |
|---|
Probab=81.55 E-value=2.6 Score=28.26 Aligned_cols=28 Identities=25% Similarity=0.317 Sum_probs=24.6
Q ss_pred HHHHHHhhccCCHHHHHHHHHHHHHhhc
Q 004761 489 IPPLLSLLYSEAQLTQEHAVTALLNLSI 516 (732)
Q Consensus 489 I~~Lv~lL~s~~~~v~~~A~~~L~nLs~ 516 (732)
+|.+++++.+++++++..|+.+|.+++.
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 6889999999999999999999998863
|
Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B .... |
| >PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits [] | Back alignment and domain information |
|---|
Probab=80.53 E-value=90 Score=33.76 Aligned_cols=156 Identities=13% Similarity=0.044 Sum_probs=109.3
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhc-cChhhHHHHHh-cC-CHHHHHHhhccC-----C--------HHHHHHHHHH
Q 004761 447 VKKLIEDLNSTSNEIQASAAAELRLLAK-HNMENRMIIGN-CG-AIPPLLSLLYSE-----A--------QLTQEHAVTA 510 (732)
Q Consensus 447 i~~Lv~~L~s~~~~~~~~Al~~L~~La~-~~~~~r~~i~~-~G-~I~~Lv~lL~s~-----~--------~~v~~~A~~~ 510 (732)
+..+.+.|.+.....+..+++.|..+.. .+......+.. -+ -.+.|..++... + +.++...+..
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 6778888888888888899999999998 66555444443 33 345666666321 1 2788888887
Q ss_pred HHHhhcC--CchHHHHH-HcCCHHHHHHHHcCCCHHHHHHHHHHHHH-hccC----chhHHHHHhcchHHHHHHhhcCCC
Q 004761 511 LLNLSIN--DENKAMIA-EAGAIEPLIHVLKSGNGGAKENSAAALFS-LSVL----EEYKAKIGRSGAVKALVDLLGSGT 582 (732)
Q Consensus 511 L~nLs~~--~~~k~~i~-~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~-Ls~~----~~~k~~i~~~g~i~~Lv~lL~~~~ 582 (732)
+..+-.. ...+..+. ..+.+..+.+-|...+.++....+.+|.. +... ...|..+....++..|+.+....+
T Consensus 138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~ 217 (330)
T PF11707_consen 138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDG 217 (330)
T ss_pred HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccC
Confidence 6665433 34566666 45678888888888888888888888875 3332 234566666678899999887665
Q ss_pred H----HHHHHHHHHHHHhccCchh
Q 004761 583 L----RGRKDAATALFNLSIFHEN 602 (732)
Q Consensus 583 ~----~~~~~Al~aL~nLs~~~~n 602 (732)
+ .+...+-..|..+|.++.+
T Consensus 218 ~~~~~~~~~~vh~fL~~lcT~p~~ 241 (330)
T PF11707_consen 218 EDEKSSVADLVHEFLLALCTDPKH 241 (330)
T ss_pred CcccchHHHHHHHHHHHHhcCCCc
Confidence 5 7778888888888876543
|
The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length. |
| >KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=80.46 E-value=46 Score=40.85 Aligned_cols=148 Identities=18% Similarity=0.119 Sum_probs=88.8
Q ss_pred cchHHHHHHhhcCCCHHHHHHHHHHHHHhccCchhHHHHHhhchHHHHHHhc--CCChHHHHHHHHHHHHHhCChhhHHH
Q 004761 568 SGAVKALVDLLGSGTLRGRKDAATALFNLSIFHENKARIIQAGAVKHLVDLM--DPSTGMVDKAVALLANLSTVGEGRLA 645 (732)
Q Consensus 568 ~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~n~~~lv~~G~V~~Ll~lL--~~~~~l~e~al~iL~nLa~~~~~r~~ 645 (732)
.+++.-|+..|++.+..++..|++-+..++..-+ .-....++...++++ .++...--.++-+|+.|+.-.--...
T Consensus 340 E~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp---~~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps 416 (1133)
T KOG1943|consen 340 EFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLP---PELADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPS 416 (1133)
T ss_pred HHHHHHHHHhccCCcchhhHHHHHHHHHHHccCc---HHHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchH
Confidence 3678888888999999999999999999887554 223334666677766 22344445677778877653211111
Q ss_pred HHHcCcHHHHHHHHh--------cCCHHHHHHHHHHHHHHhcC-ChHhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHH
Q 004761 646 IAREGGIPSLVEVVE--------SGSQRGKENAASILLQLCLH-SPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLL 716 (732)
Q Consensus 646 i~~~~~I~~Lv~lL~--------~~s~~~~e~A~~~L~~L~~~-~~~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL 716 (732)
.. ...+|.+++-+. +....+++.|+.++|++.+. ++....-+++.=+-..|...+-+..-..|+.|.+++
T Consensus 417 ~l-~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAl 495 (1133)
T KOG1943|consen 417 LL-EDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAAL 495 (1133)
T ss_pred HH-HHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHH
Confidence 11 124555555442 23456899999999999984 444333333221122233333333456788887766
Q ss_pred HHh
Q 004761 717 SHF 719 (732)
Q Consensus 717 ~~l 719 (732)
.-.
T Consensus 496 qE~ 498 (1133)
T KOG1943|consen 496 QEN 498 (1133)
T ss_pred HHH
Confidence 544
|
|
| >KOG0396 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=80.40 E-value=0.81 Score=48.78 Aligned_cols=49 Identities=22% Similarity=0.327 Sum_probs=42.5
Q ss_pred ccccccCcccCCC---ceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCC
Q 004761 239 YFRCPLSLELMID---PVIVASGQTYERVFIQKWLDHGLNICPKTRQTLAHT 287 (732)
Q Consensus 239 ~f~Cpi~~~lm~d---PV~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~ 287 (732)
.+.|.|++++|.| |++.+.|++|-..+|+.|=...+-.||.++..+...
T Consensus 330 ~Lvc~isge~md~~N~P~lfpnG~Vyg~~~L~s~~~~~~i~dP~~~k~f~~~ 381 (389)
T KOG0396|consen 330 RLVCSISGELMDDDNPPHLFPNGYVYGTKALESLNEDDGIGDPRTKKVFRYS 381 (389)
T ss_pred HHHhhccccccCCCCCcccccCceeehhHHHHhhcccCCCcCCCCCccccHH
Confidence 4679999999987 999999999999999999876668899998877543
|
|
| >KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=80.39 E-value=79 Score=37.40 Aligned_cols=124 Identities=15% Similarity=0.094 Sum_probs=74.4
Q ss_pred hcchHHHHHHh-hcCCCHHHHHHHHHHHHHhccCchhHHHHHhhchHHHHHHhc--CCChHHHHHHHHHHHHHhCChhhH
Q 004761 567 RSGAVKALVDL-LGSGTLRGRKDAATALFNLSIFHENKARIIQAGAVKHLVDLM--DPSTGMVDKAVALLANLSTVGEGR 643 (732)
Q Consensus 567 ~~g~i~~Lv~l-L~~~~~~~~~~Al~aL~nLs~~~~n~~~lv~~G~V~~Ll~lL--~~~~~l~e~al~iL~nLa~~~~~r 643 (732)
..++|..|+++ ..+.+..+++.|..+|.-++..+++ .++..+++| +-++.++-.++-+|.--|.....+
T Consensus 552 nnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~--------~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~ 623 (929)
T KOG2062|consen 552 NNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPE--------QLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLK 623 (929)
T ss_pred chhhHHHhhcccccccchHHHHHHHHHheeeEecChh--------hchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcH
Confidence 34677888887 5667888999999999877765443 345556667 457777777888888777765544
Q ss_pred HHHHHcCcHHHHHHHHhcCCHHHHHHHHHHHHHH-hcCChHhHHHHHhCCCHHHHHHchhcCCh
Q 004761 644 LAIAREGGIPSLVEVVESGSQRGKENAASILLQL-CLHSPKFCTLVLQEGAVPPLVGLSQSGTP 706 (732)
Q Consensus 644 ~~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L~~L-~~~~~~~~~~v~~~G~i~~L~~Ll~~g~~ 706 (732)
.++ ..|-.++.....-++..|+-++.-+ +..++..+..+ .|....+.+++.+.++
T Consensus 624 eAi------~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~pkv--~~frk~l~kvI~dKhE 679 (929)
T KOG2062|consen 624 EAI------NLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLCPKV--NGFRKQLEKVINDKHE 679 (929)
T ss_pred HHH------HHHhhhhcChHHHHHHHHHHHHHHHHHhcccccCchH--HHHHHHHHHHhhhhhh
Confidence 433 3333344444455666666555333 33444433333 1334555556655543
|
|
| >PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes | Back alignment and domain information |
|---|
Probab=80.34 E-value=35 Score=35.56 Aligned_cols=135 Identities=18% Similarity=0.111 Sum_probs=86.0
Q ss_pred CCHHHHHHHHHHHHHhccCchhHHHHHhhch--HHHHHHhc-CC----ChHHHHHHHHHHHHHhCChh-hHH-HHHHcCc
Q 004761 581 GTLRGRKDAATALFNLSIFHENKARIIQAGA--VKHLVDLM-DP----STGMVDKAVALLANLSTVGE-GRL-AIAREGG 651 (732)
Q Consensus 581 ~~~~~~~~Al~aL~nLs~~~~n~~~lv~~G~--V~~Ll~lL-~~----~~~l~e~al~iL~nLa~~~~-~r~-~i~~~~~ 651 (732)
..+..+..+++++.|+-.+...+..+.+... +-..+..+ .. +..++..+..++.|++..-- .+. .-.....
T Consensus 122 ~~~~~~ml~lR~l~NlF~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~l 201 (268)
T PF08324_consen 122 SPPANQMLALRLLANLFSHPPGRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSEL 201 (268)
T ss_dssp SSHHHHHHHHHHHHHHTTSCCCHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHH
T ss_pred CcHHHHHHHHHHHHHhhCCCccHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 4577888999999999999888888777432 33333333 32 56777778888889865211 010 0000112
Q ss_pred HHHHHHHHh-c-CCHHHHHHHHHHHHHHhcCChHhHHHHHhCCCHHHHHHchhcC-ChHHHHHHHHH
Q 004761 652 IPSLVEVVE-S-GSQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSG-TPRAKEKAQQL 715 (732)
Q Consensus 652 I~~Lv~lL~-~-~s~~~~e~A~~~L~~L~~~~~~~~~~v~~~G~i~~L~~Ll~~g-~~~~k~kA~~l 715 (732)
+..+++.+. . .++++...++.+|.+|+..++.....+...|+...+......+ .+|.++.+.++
T Consensus 202 l~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~ri~~v~~ei 268 (268)
T PF08324_consen 202 LSSIIEVLSREESDEEALYRLLVALGTLLSSSDSAKQLAKSLDVKSVLSKKANKSKEPRIKEVAAEI 268 (268)
T ss_dssp HHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHHHHHHCCCCTHHHHHHHHHHHTTSHHHHHHHHHH
T ss_pred HHHHHHHhccccCCHHHHHHHHHHHHHHhccChhHHHHHHHcChHHHHHHHHhcccchHHHHHhccC
Confidence 444445332 2 5888999999999999986655555444466666666665444 57888887764
|
It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A. |
| >KOG1788 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=80.07 E-value=84 Score=38.57 Aligned_cols=221 Identities=18% Similarity=0.196 Sum_probs=123.6
Q ss_pred chHHHHHHHhcCCCH------------HHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcc----------CCHH
Q 004761 445 PYVKKLIEDLNSTSN------------EIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYS----------EAQL 502 (732)
Q Consensus 445 ~~i~~Lv~~L~s~~~------------~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s----------~~~~ 502 (732)
..+-.+|..|+++-. .....-+..++....-+...|..+.++|+...|...|.. +|.-
T Consensus 720 qelmalVdtLksgmvt~IsgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLlttLhtfqgftelhdesDlc 799 (2799)
T KOG1788|consen 720 QELMALVDTLKSGMVTRISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTLHTFQGFTELHDESDLC 799 (2799)
T ss_pred HHHHHHHHHHHhcceeccchhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHHHHHhccchhcCCchhhh
Confidence 456678888876311 112223445566665566778889999999988887742 1222
Q ss_pred HHHHHHHHHHHh-----hcCCchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHh
Q 004761 503 TQEHAVTALLNL-----SINDENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDL 577 (732)
Q Consensus 503 v~~~A~~~L~nL-----s~~~~~k~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~l 577 (732)
+...-..+|..+ +.+..|+..+-..=..+.+..+|.... |...+..+..|.. ..+.-.+.
T Consensus 800 vyiklfkilFrlfTlavcenasNrmklhtvITsqtftsLLresg-------------llcvnler~viql--llElalev 864 (2799)
T KOG1788|consen 800 VYIKLFKILFRLFTLAVCENASNRMKLHTVITSQTFTSLLRESG-------------LLCVNLERHVIQL--LLELALEV 864 (2799)
T ss_pred hHHHHHHHHHHHHHHHHhhcchhhhheeeeeeHHHHHHHHHHhc-------------cceecchHHHHHH--HHHHHHHh
Confidence 222333333332 234445554433223333444443211 1111111111110 01111122
Q ss_pred hcCCCHHHHHHHHHHHHHhccC-----------chhHHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCChh-hHH
Q 004761 578 LGSGTLRGRKDAATALFNLSIF-----------HENKARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGE-GRL 644 (732)
Q Consensus 578 L~~~~~~~~~~Al~aL~nLs~~-----------~~n~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~-~r~ 644 (732)
+-......-..|+..++.+-.+ ...+.++..+|++..|++.+ ...+.++-.-+.+|..+++..+ +.+
T Consensus 865 lvppfLtSEsaAcaeVfelednifavntPsGqfnpdk~~iynagavRvlirslLlnypK~qlefl~lleSlaRaspfnae 944 (2799)
T KOG1788|consen 865 LVPPFLTSESAACAEVFELEDNIFAVNTPSGQFNPDKQKIYNAGAVRVLIRSLLLNYPKLQLEFLNLLESLARASPFNAE 944 (2799)
T ss_pred hCCchhhhhHHHHHHHhhcccceeeeccCCCCcCchHhhhcccchhHHHHHHHHhhChHHHHHHHHHHHHHhhcCCCchh
Confidence 2222222233455555544221 23567899999999999998 7778888889999999988554 555
Q ss_pred HHHHcCcHHHHHHHH---hcCCHHHHHHHHHHHHHHhcC
Q 004761 645 AIAREGGIPSLVEVV---ESGSQRGKENAASILLQLCLH 680 (732)
Q Consensus 645 ~i~~~~~I~~Lv~lL---~~~s~~~~e~A~~~L~~L~~~ 680 (732)
-....|.+..|++++ .+|+...--+|..++.-||..
T Consensus 945 lltS~gcvellleIiypflsgsspfLshalkIvemLgay 983 (2799)
T KOG1788|consen 945 LLTSAGCVELLLEIIYPFLSGSSPFLSHALKIVEMLGAY 983 (2799)
T ss_pred hhhcccHHHHHHHHhhhhhcCCchHhhccHHHHHHHhhc
Confidence 555678899988876 356666677788888777764
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 732 | ||||
| 1t1h_A | 78 | Nmr Solution Structure Of The U Box Domain From Atp | 3e-23 | ||
| 2z6g_A | 780 | Crystal Structure Of A Full-Length Zebrafish Beta-C | 1e-08 | ||
| 2gl7_A | 550 | Crystal Structure Of A Beta-CateninBCL9TCF4 COMPLEX | 5e-08 | ||
| 1i7x_A | 538 | Beta-CateninE-Cadherin Complex Length = 538 | 6e-08 | ||
| 1jpw_A | 540 | Crystal Structure Of A Human Tcf-4 BETA-Catenin Com | 6e-08 | ||
| 3ouw_A | 540 | Structure Of Beta-Catenin With Lef-1 Length = 540 | 6e-08 | ||
| 4db8_A | 252 | Designed Armadillo-Repeat Protein Length = 252 | 6e-08 | ||
| 4db8_A | 252 | Designed Armadillo-Repeat Protein Length = 252 | 6e-05 | ||
| 2z6h_A | 644 | Crystal Structure Of Beta-Catenin Armadillo Repeat | 7e-08 | ||
| 2bct_A | 516 | The Armadillo Repeat Region From Murine Beta-Cateni | 7e-08 | ||
| 1qz7_A | 533 | Beta-Catenin Binding Domain Of Axin In Complex With | 7e-08 | ||
| 1g3j_A | 532 | Crystal Structure Of The Xtcf3-CbdBETA-Catenin Arma | 7e-08 | ||
| 1jdh_A | 529 | Crystal Structure Of Beta-Catenin And Htcf-4 Length | 7e-08 | ||
| 4djs_A | 518 | Structure Of Beta-Catenin In Complex With A Stapled | 8e-08 | ||
| 1luj_A | 514 | Crystal Structure Of The Beta-CateninICAT COMPLEX L | 8e-08 | ||
| 3tx7_A | 527 | Crystal Structure Of Lrh-1BETA-Catenin Complex Leng | 8e-08 | ||
| 1t08_A | 519 | Crystal Structure Of Beta-CateninICAT HELICAL Domai | 8e-08 | ||
| 2oxq_C | 80 | Structure Of The Ubch5 :chip U-Box Complex Length = | 1e-06 | ||
| 2f42_A | 179 | Dimerization And U-Box Domains Of Zebrafish C-Termi | 1e-06 | ||
| 2c2v_S | 78 | Crystal Structure Of The Chip-Ubc13-Uev1a Complex L | 3e-06 | ||
| 2c2l_A | 281 | Crystal Structure Of The Chip U-Box E3 Ubiquitin Li | 4e-06 | ||
| 3bct_A | 470 | The Armadillo Repeat Region From Murine Beta-Cateni | 6e-06 | ||
| 4db6_A | 210 | Designed Armadillo Repeat Protein (Yiiim3aii) Lengt | 8e-06 | ||
| 4dba_A | 210 | Designed Armadillo Repeat Protein (Yiim3aii) Length | 2e-05 | ||
| 4db9_A | 210 | Designed Armadillo Repeat Protein (Yiiim3aiii) Leng | 3e-05 | ||
| 4db9_A | 210 | Designed Armadillo Repeat Protein (Yiiim3aiii) Leng | 1e-04 | ||
| 3ifq_A | 553 | Interction Of Plakoglobin And Beta-Catenin With Des | 4e-05 | ||
| 1ee4_A | 423 | Crystal Structure Of Yeast Karyopherin (Importin) A | 5e-04 | ||
| 1ee5_A | 424 | Yeast Karyopherin (Importin) Alpha In A Complex Wit | 6e-04 | ||
| 1un0_A | 443 | Crystal Structure Of Yeast Karyopherin (Importin) A | 7e-04 | ||
| 1bk5_A | 422 | Karyopherin Alpha From Saccharomyces Cerevisiae Len | 8e-04 | ||
| 1bk6_A | 422 | Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls Leng | 8e-04 |
| >pdb|1T1H|A Chain A, Nmr Solution Structure Of The U Box Domain From Atpub14, An Armadillo Repeat Containing Protein From Arabidopsis Thaliana Length = 78 | Back alignment and structure |
|
| >pdb|2Z6G|A Chain A, Crystal Structure Of A Full-Length Zebrafish Beta-Catenin Length = 780 | Back alignment and structure |
|
| >pdb|2GL7|A Chain A, Crystal Structure Of A Beta-CateninBCL9TCF4 COMPLEX Length = 550 | Back alignment and structure |
|
| >pdb|1I7X|A Chain A, Beta-CateninE-Cadherin Complex Length = 538 | Back alignment and structure |
|
| >pdb|1JPW|A Chain A, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex Length = 540 | Back alignment and structure |
|
| >pdb|3OUW|A Chain A, Structure Of Beta-Catenin With Lef-1 Length = 540 | Back alignment and structure |
|
| >pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein Length = 252 | Back alignment and structure |
|
| >pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein Length = 252 | Back alignment and structure |
|
| >pdb|2Z6H|A Chain A, Crystal Structure Of Beta-Catenin Armadillo Repeat Region And Its C-Terminal Domain Length = 644 | Back alignment and structure |
|
| >pdb|2BCT|A Chain A, The Armadillo Repeat Region From Murine Beta-Catenin Length = 516 | Back alignment and structure |
|
| >pdb|1QZ7|A Chain A, Beta-Catenin Binding Domain Of Axin In Complex With Beta- Catenin Length = 533 | Back alignment and structure |
|
| >pdb|1G3J|A Chain A, Crystal Structure Of The Xtcf3-CbdBETA-Catenin Armadillo Repeat Complex Length = 532 | Back alignment and structure |
|
| >pdb|1JDH|A Chain A, Crystal Structure Of Beta-Catenin And Htcf-4 Length = 529 | Back alignment and structure |
|
| >pdb|4DJS|A Chain A, Structure Of Beta-Catenin In Complex With A Stapled Peptide Inhibitor Length = 518 | Back alignment and structure |
|
| >pdb|1LUJ|A Chain A, Crystal Structure Of The Beta-CateninICAT COMPLEX Length = 514 | Back alignment and structure |
|
| >pdb|3TX7|A Chain A, Crystal Structure Of Lrh-1BETA-Catenin Complex Length = 527 | Back alignment and structure |
|
| >pdb|1T08|A Chain A, Crystal Structure Of Beta-CateninICAT HELICAL DomainUNPHOSPHORYLATED APC R3 Length = 519 | Back alignment and structure |
|
| >pdb|2OXQ|C Chain C, Structure Of The Ubch5 :chip U-Box Complex Length = 80 | Back alignment and structure |
|
| >pdb|2F42|A Chain A, Dimerization And U-Box Domains Of Zebrafish C-Terminal Of Hsp70 Interacting Protein Length = 179 | Back alignment and structure |
|
| >pdb|2C2V|S Chain S, Crystal Structure Of The Chip-Ubc13-Uev1a Complex Length = 78 | Back alignment and structure |
|
| >pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase Length = 281 | Back alignment and structure |
|
| >pdb|3BCT|A Chain A, The Armadillo Repeat Region From Murine Beta-Catenin Length = 470 | Back alignment and structure |
|
| >pdb|4DB6|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aii) Length = 210 | Back alignment and structure |
|
| >pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii) Length = 210 | Back alignment and structure |
|
| >pdb|4DB9|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aiii) Length = 210 | Back alignment and structure |
|
| >pdb|4DB9|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aiii) Length = 210 | Back alignment and structure |
|
| >pdb|3IFQ|A Chain A, Interction Of Plakoglobin And Beta-Catenin With Desmosomal Cadherins Length = 553 | Back alignment and structure |
|
| >pdb|1EE4|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In A Complex With A C-Myc Nls Peptide Length = 423 | Back alignment and structure |
|
| >pdb|1EE5|A Chain A, Yeast Karyopherin (Importin) Alpha In A Complex With A Nucleoplasmin Nls Peptide Length = 424 | Back alignment and structure |
|
| >pdb|1UN0|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In Complex With A Nup2p N-Terminal Fragment Length = 443 | Back alignment and structure |
|
| >pdb|1BK5|A Chain A, Karyopherin Alpha From Saccharomyces Cerevisiae Length = 422 | Back alignment and structure |
|
| >pdb|1BK6|A Chain A, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls Length = 422 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
Score = 230 bits (588), Expect = 1e-70
Identities = 62/236 (26%), Positives = 118/236 (50%), Gaps = 5/236 (2%)
Query: 450 LIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVT 509
+ + LNS + Q SA + + E + + GA+P L+ LL S + + A+
Sbjct: 17 MTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALW 76
Query: 510 ALLNLSI-NDENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVL-EEYKAKIGR 567
AL N++ +E + +AGA+ L+ +L S N + + AL +++ E +
Sbjct: 77 ALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVID 136
Query: 568 SGAVKALVDLLGSGTLRGRKDAATALFNLSIFH-ENKARIIQAGAVKHLVDLM-DPSTGM 625
+GA+ ALV LL S + ++A AL N++ E +I AGA+ LV L+ P+ +
Sbjct: 137 AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQI 196
Query: 626 VDKAVALLANLSTVG-EGRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCLH 680
+ +A+ L+N+++ G E + A+ G + L ++ +++ ++ A L +L H
Sbjct: 197 LQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQSH 252
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
Score = 124 bits (313), Expect = 4e-32
Identities = 40/153 (26%), Positives = 74/153 (48%), Gaps = 2/153 (1%)
Query: 447 VKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEH 506
+ L++ L+S + +I A L +A E + + GA+P L+ LL S + +
Sbjct: 98 LPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQE 157
Query: 507 AVTALLNLSI-NDENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLS-VLEEYKAK 564
A+ AL N++ +E + +AGA+ L+ +L S N + + AL +++ E K
Sbjct: 158 ALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQA 217
Query: 565 IGRSGAVKALVDLLGSGTLRGRKDAATALFNLS 597
+ +GA++ L L + +K+A AL L
Sbjct: 218 VKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 250
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
Score = 106 bits (268), Expect = 4e-26
Identities = 35/155 (22%), Positives = 71/155 (45%), Gaps = 3/155 (1%)
Query: 568 SGAVKALVDLLGSGTLRGRKDAATALFNLSIFH-ENKARIIQAGAVKHLVDLM-DPSTGM 625
+ + L S ++ + A + E +I AGA+ LV L+ P+ +
Sbjct: 11 GSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQI 70
Query: 626 VDKAVALLANLSTVGEG-RLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCLHSPKF 684
+ +A+ L+N+++ G A+ G +P+LV+++ S +++ + A L + +
Sbjct: 71 LQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 130
Query: 685 CTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHF 719
V+ GA+P LV L S + ++A LS+
Sbjct: 131 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNI 165
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
Score = 58.1 bits (141), Expect = 2e-09
Identities = 18/71 (25%), Positives = 31/71 (43%)
Query: 447 VKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEH 506
+ L++ L+S + +I A L +A E + + GA+ L L E + Q+
Sbjct: 182 LPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKE 241
Query: 507 AVTALLNLSIN 517
A AL L +
Sbjct: 242 AQEALEKLQSH 252
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 233 bits (596), Expect = 1e-68
Identities = 72/285 (25%), Positives = 122/285 (42%), Gaps = 8/285 (2%)
Query: 434 SPSRSDEVTTTPYVKKLIEDLNSTSN-EIQASAAAELRLLAKHNMENRMIIGNCGAIPPL 492
SR + + V ++ + +T++ E A L L+ H E + I G IP L
Sbjct: 48 EASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHR-EGLLAIFKSGGIPAL 106
Query: 493 LSLLYSEAQLTQEHAVTALLNLSINDE-NKAMIAEAGAIEPLIHVLKSGNGGAKENSAAA 551
+ +L S +A+T L NL ++ E K + AG ++ ++ +L N +
Sbjct: 107 VKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDC 166
Query: 552 LFSLSVL-EEYKAKIGRSGAVKALVDLLGSGTLRGRKDAAT-ALFNLSIFHENKARIIQA 609
L L+ +E K I SG +ALV+++ + T + L LS+ NK I++A
Sbjct: 167 LQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEA 226
Query: 610 GAVKHLVDLM-DPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVESGSQRGKE 668
G ++ L + DPS +V + L NLS + + G + +LV+++ S
Sbjct: 227 GGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGME--GLLGTLVQLLGSDDINVVT 284
Query: 669 NAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQ 713
AA IL L ++ K +V Q G + LV R
Sbjct: 285 CAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEP 329
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 216 bits (551), Expect = 4e-62
Identities = 62/277 (22%), Positives = 111/277 (40%), Gaps = 8/277 (2%)
Query: 447 VKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQL-TQE 505
+ +L + LN + AA + L+K I+ + + ++ + + + T
Sbjct: 19 IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETAR 78
Query: 506 HAVTALLNLSINDENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSV-LEEYKAK 564
L NLS + E I ++G I L+ +L S + L +L + E K
Sbjct: 79 CTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMA 138
Query: 565 IGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFH-ENKARIIQAGAVKHLVDLMDPST 623
+ +G ++ +V LL ++ L L+ + E+K I+ +G + LV++M T
Sbjct: 139 VRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT 198
Query: 624 --GMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCLHS 681
++ +L LS + AI GG+ +L + SQR +N L L +
Sbjct: 199 YEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAA 258
Query: 682 PKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSH 718
K EG + LV L S A +LS+
Sbjct: 259 TK---QEGMEGLLGTLVQLLGSDDINVVTCAAGILSN 292
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 202 bits (516), Expect = 3e-57
Identities = 65/275 (23%), Positives = 120/275 (43%), Gaps = 11/275 (4%)
Query: 447 VKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYS-EAQLTQE 505
++K++ LN T+ + A L++LA N E+++II G L++++ + +
Sbjct: 145 LQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLW 204
Query: 506 HAVTALLNLSINDENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKI 565
L LS+ NK I EAG ++ L L + +N L +LS + +
Sbjct: 205 TTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLS--DAATKQE 262
Query: 566 GRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFH-ENKARIIQAGAVKHLVDLM---DP 621
G G + LV LLGS + AA L NL+ + +NK + Q G ++ LV +
Sbjct: 263 GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGD 322
Query: 622 STGMVDKAVALLANLST----VGEGRLAIAREGGIPSLVEVVESGSQRGKENAASILLQL 677
+ + A+ L +L++ + A+ G+P +V+++ S A L++
Sbjct: 323 REDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRN 382
Query: 678 CLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKA 712
P + ++GA+P LV L + +
Sbjct: 383 LALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRT 417
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 195 bits (498), Expect = 9e-55
Identities = 66/318 (20%), Positives = 110/318 (34%), Gaps = 35/318 (11%)
Query: 432 AASPSRSDEVTTTPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPP 491
+ S + ++ L L S + + LR L+ G G +
Sbjct: 214 SVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAA---TKQEGMEGLLGT 270
Query: 492 LLSLLYSEAQLTQEHAVTALLNLSI-NDENKAMIAEAGAIEPLIHVLKSGNG--GAKENS 548
L+ LL S+ A L NL+ N +NK M+ + G IE L+ + E +
Sbjct: 271 LVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPA 330
Query: 549 AAALFSLSV----LEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALF-NLSIFHENK 603
AL L+ E + + + +V LL + A L NL++ N
Sbjct: 331 ICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANH 390
Query: 604 ARIIQAGAVKHLVDLMDPST-----------------------GMVDKAVALLANLSTVG 640
A + + GA+ LV L+ + +V+ L L+
Sbjct: 391 APLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDV 450
Query: 641 EGRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGL 700
R+ I IP V+++ S + + AA +L +L + + EGA PL L
Sbjct: 451 HNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELA-QDKEAAEAIEAEGATAPLTEL 509
Query: 701 SQSGTPRAKEKAQQLLSH 718
S A +L
Sbjct: 510 LHSRNEGVATYAAAVLFR 527
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 191 bits (487), Expect = 3e-53
Identities = 60/290 (20%), Positives = 109/290 (37%), Gaps = 11/290 (3%)
Query: 432 AASPSRSDEVTTTPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPP 491
+ + + + L++ L S + + A L L H +M + G +
Sbjct: 88 SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQK 147
Query: 492 LLSLLYSEAQLTQEHAVTALLNLSI-NDENKAMIAEAGAIEPLIHVLKSGN-GGAKENSA 549
+++LL L L+ N E+K +I +G + L++++++ ++
Sbjct: 148 MVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTS 207
Query: 550 AALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFHENKARIIQA 609
L LSV K I +G ++AL L + R ++ L NLS +
Sbjct: 208 RVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLS--DAATKQEGME 265
Query: 610 GAVKHLVDLM-DPSTGMVDKAVALLANLSTVG-EGRLAIAREGGIPSLVEVVESGSQRG- 666
G + LV L+ +V A +L+NL+ + ++ + + GGI +LV V R
Sbjct: 266 GLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDRED 325
Query: 667 -KENAASILLQLCLHSP---KFCTLVLQEGAVPPLVGLSQSGTPRAKEKA 712
E A L L V +P +V L + KA
Sbjct: 326 ITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKA 375
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 172 bits (438), Expect = 2e-46
Identities = 50/261 (19%), Positives = 97/261 (37%), Gaps = 30/261 (11%)
Query: 447 VKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLY--SEAQLTQ 504
+ L++ L S + AA L L +N +N+M++ G I L+ + + +
Sbjct: 268 LGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDIT 327
Query: 505 EHAVTALLNLSINDEN----KAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFS-LSVLE 559
E A+ AL +L+ + + + + ++ +L + + L L++
Sbjct: 328 EPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCP 387
Query: 560 EYKAKIGRSGAVKALVDLLGSGTLRGRKDAAT----------------------ALFNLS 597
A + GA+ LV LL ++ + AL L+
Sbjct: 388 ANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILA 447
Query: 598 IFHENKARIIQAGAVKHLVDLMD-PSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLV 656
N+ I + V L+ P + A +L L+ E AI EG L
Sbjct: 448 RDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLT 507
Query: 657 EVVESGSQRGKENAASILLQL 677
E++ S ++ AA++L ++
Sbjct: 508 ELLHSRNEGVATYAAAVLFRM 528
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 171 bits (434), Expect = 6e-46
Identities = 52/240 (21%), Positives = 94/240 (39%), Gaps = 5/240 (2%)
Query: 478 ENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDEN-KAMIAEAGAIEPLIHV 536
AIP L LL E Q+ A + LS + + A++ + ++
Sbjct: 8 YQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRT 67
Query: 537 LKSGNG-GAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFN 595
+++ N +A L +LS E I +SG + ALV +LGS A T L N
Sbjct: 68 MQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHN 127
Query: 596 LSIFHE-NKARIIQAGAVKHLVDLMD-PSTGMVDKAVALLANLSTVG-EGRLAIAREGGI 652
L + E K + AG ++ +V L++ + + L L+ E +L I GG
Sbjct: 128 LLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGP 187
Query: 653 PSLVEVVESGSQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKA 712
+LV ++ + + S +L++ +++ G + L + R +
Sbjct: 188 QALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNC 247
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 146 bits (371), Expect = 1e-37
Identities = 48/207 (23%), Positives = 86/207 (41%), Gaps = 6/207 (2%)
Query: 510 ALLNLSINDENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRS- 568
A++NL IN ++ A AI L +L + +A + LS E + I RS
Sbjct: 1 AVVNL-INYQDDA-ELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSP 58
Query: 569 GAVKALVDLLGSGT-LRGRKDAATALFNLSIFHENKARIIQAGAVKHLVDLM-DPSTGMV 626
V A+V + + + + A L NLS E I ++G + LV ++ P ++
Sbjct: 59 QMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVL 118
Query: 627 DKAVALLANLSTVGEG-RLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCLHSPKFC 685
A+ L NL EG ++A+ GG+ +V ++ + + L L + +
Sbjct: 119 FYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESK 178
Query: 686 TLVLQEGAVPPLVGLSQSGTPRAKEKA 712
++L G LV + ++ T
Sbjct: 179 LIILASGGPQALVNIMRTYTYEKLLWT 205
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 119 bits (300), Expect = 2e-28
Identities = 37/173 (21%), Positives = 58/173 (33%), Gaps = 22/173 (12%)
Query: 447 VKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYS-------- 498
+ +++ L+ S+ A L N + GAIP L+ LL
Sbjct: 357 LPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRR 416
Query: 499 --------------EAQLTQEHAVTALLNLSINDENKAMIAEAGAIEPLIHVLKSGNGGA 544
+ E AL L+ + N+ +I I + +L S
Sbjct: 417 TSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENI 476
Query: 545 KENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLS 597
+ +A L L+ +E I GA L +LL S AA LF +S
Sbjct: 477 QRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS 529
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 230 bits (588), Expect = 2e-66
Identities = 75/279 (26%), Positives = 122/279 (43%), Gaps = 10/279 (3%)
Query: 447 VKKLIEDLNSTSN-EIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQE 505
V ++ + +T++ E A L L+ H E + I G IP L+ +L S
Sbjct: 58 VSAIVRTMQNTNDVETARCTAGTLHNLSHHR-EGLLAIFKSGGIPALVKMLGSPVDSVLF 116
Query: 506 HAVTALLNLSINDEN-KAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVL-EEYKA 563
+A+T L NL ++ E K + AG ++ ++ +L N + L L+ +E K
Sbjct: 117 YAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKL 176
Query: 564 KIGRSGAVKALVDLLGSGTLRG-RKDAATALFNLSIFHENKARIIQAGAVKHLVDLM-DP 621
I SG +ALV+++ + T + L LS+ NK I++AG ++ L + DP
Sbjct: 177 IILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDP 236
Query: 622 STGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCLHS 681
S +V + L NLS + EG + +LV+++ S AA IL L ++
Sbjct: 237 SQRLVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNN 294
Query: 682 PKFCTLVLQEGAVPPLVGLSQSGTPR--AKEKAQQLLSH 718
K +V Q G + LV R E A L H
Sbjct: 295 YKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRH 333
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 217 bits (553), Expect = 2e-61
Identities = 62/277 (22%), Positives = 111/277 (40%), Gaps = 8/277 (2%)
Query: 447 VKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQL-TQE 505
+ +L + LN + AA + L+K I+ + + ++ + + + T
Sbjct: 16 IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETAR 75
Query: 506 HAVTALLNLSINDENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSV-LEEYKAK 564
L NLS + E I ++G I L+ +L S + L +L + E K
Sbjct: 76 CTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMA 135
Query: 565 IGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFH-ENKARIIQAGAVKHLVDLMDPST 623
+ +G ++ +V LL ++ L L+ + E+K I+ +G + LV++M T
Sbjct: 136 VRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT 195
Query: 624 --GMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCLHS 681
++ +L LS + AI GG+ +L + SQR +N L L +
Sbjct: 196 YEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAA 255
Query: 682 PKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSH 718
K EG + LV L S A +LS+
Sbjct: 256 TK---QEGMEGLLGTLVQLLGSDDINVVTCAAGILSN 289
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 207 bits (528), Expect = 5e-58
Identities = 66/295 (22%), Positives = 123/295 (41%), Gaps = 11/295 (3%)
Query: 434 SPSRSDEVTTTPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLL 493
V ++K++ LN T+ + A L++LA N E+++II G L+
Sbjct: 129 QEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALV 188
Query: 494 SLLYS-EAQLTQEHAVTALLNLSINDENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAAL 552
+++ + + L LS+ NK I EAG ++ L L + +N L
Sbjct: 189 NIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTL 248
Query: 553 FSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFH-ENKARIIQAGA 611
+LS + + G G + LV LLGS + AA L NL+ + +NK + Q G
Sbjct: 249 RNLS--DAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGG 306
Query: 612 VKHLVDLM---DPSTGMVDKAVALLANLSTVGE----GRLAIAREGGIPSLVEVVESGSQ 664
++ LV + + + A+ L +L++ + + A+ G+P +V+++ S
Sbjct: 307 IEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSH 366
Query: 665 RGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHF 719
A L++ P + ++GA+P LV L + + +
Sbjct: 367 WPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQ 421
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 192 bits (488), Expect = 1e-52
Identities = 65/303 (21%), Positives = 107/303 (35%), Gaps = 35/303 (11%)
Query: 447 VKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEH 506
++ L L S + + LR L+ G G + L+ LL S+
Sbjct: 226 MQALGLHLTDPSQRLVQNCLWTLRNLSDAA---TKQEGMEGLLGTLVQLLGSDDINVVTC 282
Query: 507 AVTALLNLSI-NDENKAMIAEAGAIEPLIHVLKSGNG--GAKENSAAALFSLSV----LE 559
A L NL+ N +NK M+ + G IE L+ + E + AL L+ E
Sbjct: 283 AAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAE 342
Query: 560 EYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALF-NLSIFHENKARIIQAGAVKHLVDL 618
+ + + +V LL + A L NL++ N A + + GA+ LV L
Sbjct: 343 MAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQL 402
Query: 619 MDPST-----------------------GMVDKAVALLANLSTVGEGRLAIAREGGIPSL 655
+ + +V+ L L+ R+ I IP
Sbjct: 403 LVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLF 462
Query: 656 VEVVESGSQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQL 715
V+++ S + + AA +L +L + + EGA PL L S A +
Sbjct: 463 VQLLYSPIENIQRVAAGVLCELA-QDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAV 521
Query: 716 LSH 718
L
Sbjct: 522 LFR 524
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 190 bits (485), Expect = 4e-52
Identities = 60/290 (20%), Positives = 109/290 (37%), Gaps = 11/290 (3%)
Query: 432 AASPSRSDEVTTTPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPP 491
+ + + + L++ L S + + A L L H +M + G +
Sbjct: 85 SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQK 144
Query: 492 LLSLLYSEAQLTQEHAVTALLNLS-INDENKAMIAEAGAIEPLIHVLKSGN-GGAKENSA 549
+++LL L L+ N E+K +I +G + L++++++ ++
Sbjct: 145 MVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTS 204
Query: 550 AALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFHENKARIIQA 609
L LSV K I +G ++AL L + R ++ L NLS +
Sbjct: 205 RVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLS--DAATKQEGME 262
Query: 610 GAVKHLVDLM-DPSTGMVDKAVALLANLSTVG-EGRLAIAREGGIPSLVEVVESGSQRG- 666
G + LV L+ +V A +L+NL+ + ++ + + GGI +LV V R
Sbjct: 263 GLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDRED 322
Query: 667 -KENAASILLQLCLHSP---KFCTLVLQEGAVPPLVGLSQSGTPRAKEKA 712
E A L L V +P +V L + KA
Sbjct: 323 ITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKA 372
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 187 bits (476), Expect = 6e-51
Identities = 56/301 (18%), Positives = 108/301 (35%), Gaps = 33/301 (10%)
Query: 447 VKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLY--SEAQLTQ 504
+ L++ L S + AA L L +N +N+M++ G I L+ + + +
Sbjct: 265 LGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDIT 324
Query: 505 EHAVTALLNLSINDEN----KAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFS-LSVLE 559
E A+ AL +L+ + + + + ++ +L + + L L++
Sbjct: 325 EPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCP 384
Query: 560 EYKAKIGRSGAVKALVDLLGSGTLRGRKDAAT----------------------ALFNLS 597
A + GA+ LV LL ++ + AL L+
Sbjct: 385 ANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILA 444
Query: 598 IFHENKARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLV 656
N+ I + V L+ P + A +L L+ E AI EG L
Sbjct: 445 RDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLT 504
Query: 657 EVVESGSQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLL 716
E++ S ++ AA++L ++ P+ + +V L ++ E A L
Sbjct: 505 ELLHSRNEGVATYAAAVLFRMSEDKPQ---DYKKRLSVELTSSLFRTEPMAWNETADLGL 561
Query: 717 S 717
Sbjct: 562 D 562
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 168 bits (426), Expect = 3e-44
Identities = 53/240 (22%), Positives = 96/240 (40%), Gaps = 5/240 (2%)
Query: 483 IGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENK-AMIAEAGAIEPLIHVLKSGN 541
AIP L LL E Q+ A + LS + ++ A++ + ++ +++ N
Sbjct: 10 ELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTN 69
Query: 542 -GGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFH 600
+A L +LS E I +SG + ALV +LGS A T L NL +
Sbjct: 70 DVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ 129
Query: 601 EN-KARIIQAGAVKHLVDLMD-PSTGMVDKAVALLANLSTVG-EGRLAIAREGGIPSLVE 657
E K + AG ++ +V L++ + + L L+ E +L I GG +LV
Sbjct: 130 EGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVN 189
Query: 658 VVESGSQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLS 717
++ + + S +L++ +++ G + L + R + L
Sbjct: 190 IMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLR 249
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 125 bits (314), Expect = 5e-30
Identities = 43/231 (18%), Positives = 73/231 (31%), Gaps = 24/231 (10%)
Query: 447 VKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYS-------- 498
+ +++ L+ S+ A L N + GAIP L+ LL
Sbjct: 354 LPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRR 413
Query: 499 --------------EAQLTQEHAVTALLNLSINDENKAMIAEAGAIEPLIHVLKSGNGGA 544
+ E AL L+ + N+ +I I + +L S
Sbjct: 414 TSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENI 473
Query: 545 KENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFHENKA 604
+ +A L L+ +E I GA L +LL S AA LF +S +
Sbjct: 474 QRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS--EDKPQ 531
Query: 605 RIIQAGAVKHLVDLMDPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSL 655
+ +V+ L ++ L ++ GE + S
Sbjct: 532 DYKKRLSVELTSSLFRTEPMAWNETADLGLDIGAQGEPLGYRQDDPSYRSF 582
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 72.7 bits (178), Expect = 2e-13
Identities = 25/131 (19%), Positives = 47/131 (35%), Gaps = 6/131 (4%)
Query: 600 HENKARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGEGRLAIAREGG-IPSLVE 657
+ + A+ L L+ D +V+KA ++ LS R AI R + ++V
Sbjct: 4 NYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVR 63
Query: 658 VVESGSQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKA----Q 713
+++ + + L H + + + G +P LV + S A
Sbjct: 64 TMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLH 123
Query: 714 QLLSHFRNQRE 724
LL H +
Sbjct: 124 NLLLHQEGAKM 134
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 51.9 bits (124), Expect = 5e-07
Identities = 15/82 (18%), Positives = 27/82 (32%), Gaps = 1/82 (1%)
Query: 645 AIAREGGIPSLVEVVESGSQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLV-GLSQS 703
A IP L +++ Q AA ++ QL ++ V +V + +
Sbjct: 9 AELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNT 68
Query: 704 GTPRAKEKAQQLLSHFRNQREG 725
L + + REG
Sbjct: 69 NDVETARCTAGTLHNLSHHREG 90
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 227 bits (579), Expect = 4e-64
Identities = 74/279 (26%), Positives = 124/279 (44%), Gaps = 10/279 (3%)
Query: 447 VKKLIEDLNSTSN-EIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQE 505
V ++ + +T++ E + L L+ H+ E + I G IP L+++L S
Sbjct: 194 VSAIVRTMQNTNDVETARCTSGTLHNLS-HHREGLLAIFKSGGIPALVNMLGSPVDSVLF 252
Query: 506 HAVTALLNLSINDEN-KAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVL-EEYKA 563
HA+T L NL ++ E K + AG ++ ++ +L N + L L+ +E K
Sbjct: 253 HAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKL 312
Query: 564 KIGRSGAVKALVDLLGSGTLRG-RKDAATALFNLSIFHENKARIIQAGAVKHLVDLM-DP 621
I SG +ALV+++ + T + L LS+ NK I++AG ++ L + DP
Sbjct: 313 IILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDP 372
Query: 622 STGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCLHS 681
S +V + L NLS + + G + +LV+++ S AA IL L ++
Sbjct: 373 SQRLVQNCLWTLRNLSDAATKQEGME--GLLGTLVQLLGSDDINVVTCAAGILSNLTCNN 430
Query: 682 PKFCTLVLQEGAVPPLVGLSQSGTPRA--KEKAQQLLSH 718
K +V Q G + LV R E A L H
Sbjct: 431 YKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRH 469
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 209 bits (533), Expect = 8e-58
Identities = 66/294 (22%), Positives = 123/294 (41%), Gaps = 11/294 (3%)
Query: 434 SPSRSDEVTTTPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLL 493
V ++K++ LN T+ + A L++LA N E+++II G L+
Sbjct: 265 QEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALV 324
Query: 494 SLLYS-EAQLTQEHAVTALLNLSINDENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAAL 552
+++ + + L LS+ NK I EAG ++ L L + +N L
Sbjct: 325 NIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTL 384
Query: 553 FSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFH-ENKARIIQAGA 611
+LS + + G G + LV LLGS + AA L NL+ + +NK + Q G
Sbjct: 385 RNLS--DAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGG 442
Query: 612 VKHLVDLM---DPSTGMVDKAVALLANLSTVGEG----RLAIAREGGIPSLVEVVESGSQ 664
++ LV + + + A+ L +L++ + + A+ G+P +V+++ S
Sbjct: 443 IEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSH 502
Query: 665 RGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSH 718
A L++ P + ++GA+P LV L + + +
Sbjct: 503 WPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQ 556
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 207 bits (529), Expect = 2e-57
Identities = 75/382 (19%), Positives = 145/382 (37%), Gaps = 12/382 (3%)
Query: 346 SNSTSRSSVDVGNGFQKLKIDVSSRLTEKSNHRSPEQSYIHSRSESASSA----ISSVEY 401
S + DV N ++ + + Y +R++ +A
Sbjct: 47 SGKGNPEDDDVDNQVLYEWEQGFNQSFNQEQVADIDGQYAMTRAQRVRAAMFPETLDEGM 106
Query: 402 MLPASKELSRRCSKNEKSSELSGEIISECPAASPSRSDEVTTTPYVKKLIEDLNSTSNEI 461
+P+++ S + ++ +E S + + D T + +L + LN +
Sbjct: 107 QIPSTQFDSAHPTNVQRLAEPSQMLKHAVVNLINYQDDAELATRAIPELTKLLNDEDQVV 166
Query: 462 QASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQL-TQEHAVTALLNLSINDEN 520
AA + L+K I+ + + ++ + + + T L NLS + E
Sbjct: 167 VNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREG 226
Query: 521 KAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSV-LEEYKAKIGRSGAVKALVDLLG 579
I ++G I L+++L S ++ L +L + E K + +G ++ +V LL
Sbjct: 227 LLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN 286
Query: 580 SGTLRGRKDAATALFNLSIFH-ENKARIIQAGAVKHLVDLMDPST--GMVDKAVALLANL 636
++ L L+ + E+K I+ +G + LV++M T ++ +L L
Sbjct: 287 KTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVL 346
Query: 637 STVGEGRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCLHSPKFCTLVLQEGAVPP 696
S + AI GG+ +L + SQR +N L L + K EG +
Sbjct: 347 SVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK---QEGMEGLLGT 403
Query: 697 LVGLSQSGTPRAKEKAQQLLSH 718
LV L S A +LS+
Sbjct: 404 LVQLLGSDDINVVTCAAGILSN 425
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 188 bits (478), Expect = 2e-50
Identities = 60/290 (20%), Positives = 109/290 (37%), Gaps = 11/290 (3%)
Query: 432 AASPSRSDEVTTTPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPP 491
+ + + + L+ L S + + A L L H +M + G +
Sbjct: 221 SHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQK 280
Query: 492 LLSLLYSEAQLTQEHAVTALLNLSI-NDENKAMIAEAGAIEPLIHVLKSGN-GGAKENSA 549
+++LL L L+ N E+K +I +G + L++++++ ++
Sbjct: 281 MVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTS 340
Query: 550 AALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFHENKARIIQA 609
L LSV K I +G ++AL L + R ++ L NLS +
Sbjct: 341 RVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLS--DAATKQEGME 398
Query: 610 GAVKHLVDLM-DPSTGMVDKAVALLANLSTVG-EGRLAIAREGGIPSLVEVVESGSQRG- 666
G + LV L+ +V A +L+NL+ + ++ + + GGI +LV V R
Sbjct: 399 GLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDRED 458
Query: 667 -KENAASILLQLC---LHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKA 712
E A L L + V +P +V L + KA
Sbjct: 459 ITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKA 508
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 178 bits (453), Expect = 3e-47
Identities = 57/308 (18%), Positives = 108/308 (35%), Gaps = 34/308 (11%)
Query: 447 VKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLY--SEAQLTQ 504
+ L++ L S + AA L L +N +N+M++ G I L+ + + +
Sbjct: 401 LGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDIT 460
Query: 505 EHAVTALLNLSINDENKAM----IAEAGAIEPLIHVLKSGNGGAKENSAAALFS-LSVLE 559
E A+ AL +L+ ++ M + + ++ +L + + L L++
Sbjct: 461 EPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCP 520
Query: 560 EYKAKIGRSGAVKALVDLLGSGTLRGRKDAA----------------------TALFNLS 597
A + GA+ LV LL ++ + AL L+
Sbjct: 521 ANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILA 580
Query: 598 IFHENKARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLV 656
N+ I + V L+ P + A +L L+ E AI EG L
Sbjct: 581 RDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLT 640
Query: 657 EVVESGSQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLL 716
E++ S ++ AA++L ++ P+ ++ L P + L
Sbjct: 641 ELLHSRNEGVATYAAAVLFRMSEDKPQ----DYKKRLSVELTSSLFRTEPMTWNETGDLG 696
Query: 717 SHFRNQRE 724
Q E
Sbjct: 697 LDIGAQGE 704
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 119 bits (300), Expect = 4e-28
Identities = 45/230 (19%), Positives = 74/230 (32%), Gaps = 25/230 (10%)
Query: 427 ISECPAASPSRSDEVTTTPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNC 486
++ + + V + +++ L+ S+ A L N +
Sbjct: 470 LTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQ 529
Query: 487 GAIPPLLSLLYSEAQLTQEHA----------------------VTALLNLSINDENKAMI 524
GAIP L+ LL Q TQ AL L+ + N+ +I
Sbjct: 530 GAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVI 589
Query: 525 AEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLR 584
I + +L S + +A L L+ +E I GA L +LL S
Sbjct: 590 RGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEG 649
Query: 585 GRKDAATALFNLSIFHENKARIIQAGAVKHLVDLMDPSTGMVDKAVALLA 634
AA LF +S E+K + + L + + M L
Sbjct: 650 VATYAAAVLFRMS---EDKPQDYKKRLSVELTSSLFRTEPMTWNETGDLG 696
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 | Back alignment and structure |
|---|
Score = 216 bits (551), Expect = 4e-64
Identities = 68/301 (22%), Positives = 120/301 (39%), Gaps = 28/301 (9%)
Query: 445 PYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQL-- 502
P + + + + A L L+ E+R + G + + LL + ++
Sbjct: 32 PGMDQDKNPMPAPVEHQICPAVCVLMKLSFDE-EHRHAMNELGGLQAIAELLQVDCEMYG 90
Query: 503 ---------TQEHAVTALLNLSIND-ENKAMI-AEAGAIEPLIHVLKSGNGGAKENSAAA 551
+ +A AL NL+ D NKA + + G + L+ LKS + ++ A+
Sbjct: 91 LTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASV 150
Query: 552 LFSLSVL--EEYKAKIGRSGAVKALVDLLGSGTLRG-RKDAATALFNLSIFH-ENKARII 607
L +LS K + G+VKAL++ K +AL+NLS ENKA I
Sbjct: 151 LRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADIC 210
Query: 608 QA-GAVKHLVDLMDP-----STGMVDKAVALLANLSTVG----EGRLAIAREGGIPSLVE 657
GA+ LV + + +++ +L N+S++ + R + + +L++
Sbjct: 211 AVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQ 270
Query: 658 VVESGSQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLS 717
++S S NA L L +PK + GAV L L S + L
Sbjct: 271 HLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALR 330
Query: 718 H 718
+
Sbjct: 331 N 331
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 | Back alignment and structure |
|---|
Score = 159 bits (403), Expect = 3e-43
Identities = 55/260 (21%), Positives = 109/260 (41%), Gaps = 19/260 (7%)
Query: 455 NSTSNEIQASAAAELRLLAKHNMENR-MIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLN 513
+ S ++ A L L ++ N+ + G + L++ L SE++ Q+ + L N
Sbjct: 94 DHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRN 153
Query: 514 LSI--NDENKAMIAEAGAIEPLIHVLKSG-NGGAKENSAAALFSLSVL-EEYKAKIGR-S 568
LS + +K + E G+++ L+ ++ +AL++LS E KA I
Sbjct: 154 LSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVD 213
Query: 569 GAVKALVDLLG----SGTLRGRKDAATALFNLSIF----HENKARIIQAGAVKHLVDLM- 619
GA+ LV L + TL + L N+S +++ + + ++ L+ +
Sbjct: 214 GALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLK 273
Query: 620 DPSTGMVDKAVALLANLSTVG-EGRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLC 678
S +V A L NLS + + A+ G + L ++ S + +A+ L L
Sbjct: 274 SHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLM 333
Query: 679 LHSP---KFCTLVLQEGAVP 695
+ P K ++ ++P
Sbjct: 334 ANRPAKYKDANIMSPGSSLP 353
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 | Back alignment and structure |
|---|
Score = 149 bits (378), Expect = 7e-40
Identities = 50/274 (18%), Positives = 101/274 (36%), Gaps = 30/274 (10%)
Query: 469 LRLLAKH----NMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAMI 524
L LL + + + + + + + AV L+ LS ++E++ +
Sbjct: 10 LHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAM 69
Query: 525 AEAGAIEPLIHVLKSG-----------NGGAKENSAAALFSLSVL-EEYKAKIGRS-GAV 571
E G ++ + +L+ + + + AL +L+ KA + G +
Sbjct: 70 NELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCM 129
Query: 572 KALVDLLGSGTLRGRKDAATALFNLSIFH--ENKARIIQAGAVKHLVDLMDPST--GMVD 627
+ALV L S + ++ A+ L NLS +K + + G+VK L++ +
Sbjct: 130 RALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLK 189
Query: 628 KAVALLANLSTVGEG-RLAIARE-GGIPSLVEVVESGSQRG----KENAASIL---LQLC 678
++ L NLS + I G + LV + SQ E+ IL L
Sbjct: 190 SVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLI 249
Query: 679 LHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKA 712
+ ++ + + L+ +S + A
Sbjct: 250 ATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNA 283
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 | Back alignment and structure |
|---|
Score = 116 bits (293), Expect = 1e-28
Identities = 44/191 (23%), Positives = 74/191 (38%), Gaps = 11/191 (5%)
Query: 430 CPAASPSRSDEVTTTPYVKKLIEDLNSTSNE-IQASAAAELRLLAKHNMENRM-IIGNCG 487
A + + VK L+E E S + L L+ H EN+ I G
Sbjct: 155 SWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDG 214
Query: 488 AIPPLLSLLYSEAQLTQ----EHAVTALLNLS----INDENKAMIAEAGAIEPLIHVLKS 539
A+ L+ L +Q E L N+S N++++ ++ E ++ L+ LKS
Sbjct: 215 ALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKS 274
Query: 540 GNGGAKENSAAALFSLSVL-EEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSI 598
+ N+ L++LS + + + GAV L +L+ S +A AL NL
Sbjct: 275 HSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMA 334
Query: 599 FHENKARIIQA 609
K +
Sbjct: 335 NRPAKYKDANI 345
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 | Back alignment and structure |
|---|
Score = 69.1 bits (169), Expect = 1e-12
Identities = 23/101 (22%), Positives = 46/101 (45%)
Query: 427 ISECPAASPSRSDEVTTTPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNC 486
+S A + + ++ L++ L S S I ++A L L+ N +++ + +
Sbjct: 245 VSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDM 304
Query: 487 GAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAMIAEA 527
GA+ L +L++S+ ++ + AL NL N K A
Sbjct: 305 GAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAKYKDANI 345
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 | Back alignment and structure |
|---|
Score = 211 bits (539), Expect = 3e-61
Identities = 78/378 (20%), Positives = 143/378 (37%), Gaps = 31/378 (8%)
Query: 374 KSNHRSPEQSYIHSRSESASSAISSVEYMLPASKELSRRCSKNEKSSELSGEIISECPAA 433
N + S+ A + S+ + + S+ +R + + L +I + C
Sbjct: 80 HGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETC 139
Query: 434 SPSRSDEVTTTPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLL 493
+ P + + + + A L L+ E+R + G + +
Sbjct: 140 ---WEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDE-EHRHAMNELGGLQAIA 195
Query: 494 SLLYSEAQL-----------TQEHAVTALLNLSIND-ENKAMI-AEAGAIEPLIHVLKSG 540
LL + ++ + +A AL NL+ D NKA + + G + L+ LKS
Sbjct: 196 ELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSE 255
Query: 541 NGGAKENSAAALFSLSVL--EEYKAKIGRSGAVKALVDLLGSGT-LRGRKDAATALFNLS 597
+ ++ A+ L +LS K + G+VKAL++ K +AL+NLS
Sbjct: 256 SEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLS 315
Query: 598 IF-HENKARIIQA-GAVKHLVDLMDP-----STGMVDKAVALLANLSTVG----EGRLAI 646
ENKA I GA+ LV + + +++ +L N+S++ + R +
Sbjct: 316 AHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQIL 375
Query: 647 AREGGIPSLVEVVESGSQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGTP 706
+ +L++ ++S S NA L L +PK + GAV L L S
Sbjct: 376 RENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHK 435
Query: 707 RAKEKAQQLLSHFRNQRE 724
+ L + R
Sbjct: 436 MIAMGSAAALRNLMANRP 453
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 | Back alignment and structure |
|---|
Score = 133 bits (335), Expect = 2e-33
Identities = 58/350 (16%), Positives = 116/350 (33%), Gaps = 60/350 (17%)
Query: 428 SECPAASPSRSDEVTTTPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCG 487
S V+ + L+ + + L ++ + ++ + + G
Sbjct: 12 SGLVPRGSHMRLTSHLGTKVEMVYSLLSMLGTHDKDDMSRTLLAMS-SSQDSCISMRQSG 70
Query: 488 AIPPLLSLLYSE------------AQLTQEHAVTALLNLSINDENKAM------------ 523
+P L+ LL+ ++ + A AL N+ + +
Sbjct: 71 CLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLE 130
Query: 524 -------------IAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRSGA 570
A ++ + + + + L LS EE++ + G
Sbjct: 131 QIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGG 190
Query: 571 VKALVDLLGSGTLRG-----------RKDAATALFNLSIFH-ENKARIIQ-AGAVKHLVD 617
++A+ +LL R+ A AL NL+ NKA + G ++ LV
Sbjct: 191 LQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVA 250
Query: 618 LMD-PSTGMVDKAVALLANLSTVG--EGRLAIAREGGIPSLVEVV-ESGSQRGKENAASI 673
+ S + ++L NLS + + G + +L+E E + ++ S
Sbjct: 251 QLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSA 310
Query: 674 LLQLCLHSPKFCT-LVLQEGAVPPLVGL----SQSGTPRAKEKAQQLLSH 718
L L H + + +GA+ LVG SQ+ T E +L +
Sbjct: 311 LWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRN 360
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 | Back alignment and structure |
|---|
Score = 117 bits (295), Expect = 3e-28
Identities = 44/184 (23%), Positives = 74/184 (40%), Gaps = 11/184 (5%)
Query: 433 ASPSRSDEVTTTPYVKKLIEDLNSTSNE-IQASAAAELRLLAKHNMENRM-IIGNCGAIP 490
A + + VK L+E E S + L L+ H EN+ I GA+
Sbjct: 274 ADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALA 333
Query: 491 PLLSLLYSEAQLT----QEHAVTALLNLSI----NDENKAMIAEAGAIEPLIHVLKSGNG 542
L+ L +Q E L N+S N++++ ++ E ++ L+ LKS +
Sbjct: 334 FLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSL 393
Query: 543 GAKENSAAALFSLSVL-EEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFHE 601
N+ L++LS + + + GAV L +L+ S +A AL NL
Sbjct: 394 TIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRP 453
Query: 602 NKAR 605
K +
Sbjct: 454 AKYK 457
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 | Back alignment and structure |
|---|
Score = 105 bits (262), Expect = 4e-24
Identities = 47/300 (15%), Positives = 103/300 (34%), Gaps = 55/300 (18%)
Query: 458 SNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSIN 517
S+ ++ L H + + LLS+L + ++ LL +S +
Sbjct: 3 SSHHHHHHSSGLVPRGSHMRLTSHLGTKVEMVYSLLSMLGTH---DKDDMSRTLLAMSSS 59
Query: 518 DENKAMIAEAGAIEPLIHVLKS------------GNGGAKENSAAALFSLSVLEEYKAKI 565
++ + ++G + LI +L G+ A+ ++AAL ++ + +
Sbjct: 60 QDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRG 119
Query: 566 GRSGAVKAL-------------------------VDLLGSGTLRGRKDAATALFNLSIFH 600
R V L + + + A L LS
Sbjct: 120 RREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDE 179
Query: 601 ENKARIIQAGAVKHLVDLM------------DPSTGMVDKAVALLANLS--TVGEGRLAI 646
E++ + + G ++ + +L+ S + A L NL+ V
Sbjct: 180 EHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLC 239
Query: 647 AREGGIPSLVEVVESGSQRGKENAASILLQLCLHSPKFC-TLVLQEGAVPPLVGLSQSGT 705
+ +G + +LV ++S S+ ++ AS+L L + + + G+V L+ +
Sbjct: 240 SMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVK 299
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 | Back alignment and structure |
|---|
Score = 70.0 bits (171), Expect = 9e-13
Identities = 22/95 (23%), Positives = 45/95 (47%)
Query: 427 ISECPAASPSRSDEVTTTPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNC 486
+S A + + ++ L++ L S S I ++A L L+ N +++ + +
Sbjct: 361 VSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDM 420
Query: 487 GAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENK 521
GA+ L +L++S+ ++ + AL NL N K
Sbjct: 421 GAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAK 455
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 | Back alignment and structure |
|---|
Score = 191 bits (487), Expect = 1e-56
Identities = 50/196 (25%), Positives = 96/196 (48%), Gaps = 4/196 (2%)
Query: 447 VKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEH 506
+ ++++ LNS + SA +L +A E + + GA+P L+ LL S + +
Sbjct: 14 LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQE 73
Query: 507 AVTALLNLSI-NDENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVL-EEYKAK 564
A+ AL N++ +E + +AGA+ L+ +L S N + + AL +++ E
Sbjct: 74 ALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 133
Query: 565 IGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFHENKAR-IIQAGAVKHLVDLM-DPS 622
+ +GA+ ALV LL S + ++A AL N++ + + + +AGA++ L L +
Sbjct: 134 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHEN 193
Query: 623 TGMVDKAVALLANLST 638
+ +A L L +
Sbjct: 194 EKIQKEAQEALEKLQS 209
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 | Back alignment and structure |
|---|
Score = 147 bits (372), Expect = 1e-40
Identities = 50/208 (24%), Positives = 102/208 (49%), Gaps = 5/208 (2%)
Query: 478 ENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSI-NDENKAMIAEAGAIEPLIHV 536
+ + +P ++ L S Q + A+ L ++ +E + +AGA+ L+ +
Sbjct: 3 GSHHHHHHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQL 62
Query: 537 LKSGNGGAKENSAAALFSLSVL-EEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFN 595
L S N + + AL +++ E + +GA+ ALV LL S + ++A AL N
Sbjct: 63 LSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSN 122
Query: 596 LS-IFHENKARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVG-EGRLAIAREGGI 652
++ +E +I AGA+ LV L+ P+ ++ +A+ L+N+++ G E + A+ G +
Sbjct: 123 IASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGAL 182
Query: 653 PSLVEVVESGSQRGKENAASILLQLCLH 680
L ++ +++ ++ A L +L H
Sbjct: 183 EKLEQLQSHENEKIQKEAQEALEKLQSH 210
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 | Back alignment and structure |
|---|
Score = 142 bits (360), Expect = 7e-39
Identities = 45/205 (21%), Positives = 96/205 (46%), Gaps = 4/205 (1%)
Query: 519 ENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVL-EEYKAKIGRSGAVKALVDL 577
+ + ++ L S + +++ L ++ E + +GA+ ALV L
Sbjct: 3 GSHHHHHHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQL 62
Query: 578 LGSGTLRGRKDAATALFNLSIFHENKAR-IIQAGAVKHLVDLM-DPSTGMVDKAVALLAN 635
L S + ++A AL N++ + + +I AGA+ LV L+ P+ ++ +A+ L+N
Sbjct: 63 LSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSN 122
Query: 636 LSTVG-EGRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCLHSPKFCTLVLQEGAV 694
+++ G E A+ G +P+LV+++ S +++ + A L + + V + GA+
Sbjct: 123 IASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGAL 182
Query: 695 PPLVGLSQSGTPRAKEKAQQLLSHF 719
L L + +++AQ+ L
Sbjct: 183 EKLEQLQSHENEKIQKEAQEALEKL 207
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 | Back alignment and structure |
|---|
Score = 110 bits (277), Expect = 1e-27
Identities = 37/174 (21%), Positives = 76/174 (43%), Gaps = 7/174 (4%)
Query: 558 LEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFH-ENKARIIQAGAVKHLV 616
+ + +V L S + + A L ++ E +I AGA+ LV
Sbjct: 1 MRGSHHHHHHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALV 60
Query: 617 DLM-DPSTGMVDKAVALLANLSTVGEG-RLAIAREGGIPSLVEVVESGSQRGKENAASIL 674
L+ P+ ++ +A+ L+N+++ G A+ G +P+LV+++ S +++ + A L
Sbjct: 61 QLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWAL 120
Query: 675 LQLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKA----QQLLSHFRNQRE 724
+ + V+ GA+P LV L S + ++A + S Q++
Sbjct: 121 SNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQ 174
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 | Back alignment and structure |
|---|
Score = 51.5 bits (124), Expect = 2e-07
Identities = 18/71 (25%), Positives = 31/71 (43%)
Query: 447 VKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEH 506
+ L++ L+S + +I A L +A E + + GA+ L L E + Q+
Sbjct: 140 LPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKE 199
Query: 507 AVTALLNLSIN 517
A AL L +
Sbjct: 200 AQEALEKLQSH 210
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 188 bits (480), Expect = 5e-53
Identities = 65/293 (22%), Positives = 122/293 (41%), Gaps = 7/293 (2%)
Query: 434 SPSRSDEVTTTPYVKKLIEDLNSTSN-EIQASAAAELRLLAKHNMENRMIIGNCGAIPPL 492
+P + ++T V + +E L N +Q +A L +A N I+ GA+P
Sbjct: 53 NPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIF 112
Query: 493 LSLLYSEAQLTQEHAVTALLNLSI-NDENKAMIAEAGAIEPLIHVLKSGN-GGAKENSAA 550
+ LL SE + QE AV AL N++ + + + + + PL+ + N N+
Sbjct: 113 IELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVW 172
Query: 551 ALFSLSVLEEYKAKIGR-SGAVKALVDLLGSGTLRGRKDAATALFNLSI-FHENKARIIQ 608
AL +L + + + S + L LL DA AL LS ++ +I
Sbjct: 173 ALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVID 232
Query: 609 AGAVKHLVDLM-DPSTGMVDKAVALLANLSTVG-EGRLAIAREGGIPSLVEVVESGSQRG 666
AG + LV+L+ +V A+ + N+ T I + SL+ ++ S +
Sbjct: 233 AGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESI 292
Query: 667 KENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHF 719
K+ A + + + V+ P L+ + Q+ R +++A +++
Sbjct: 293 KKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNA 345
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 154 bits (391), Expect = 8e-41
Identities = 58/300 (19%), Positives = 121/300 (40%), Gaps = 7/300 (2%)
Query: 426 IISECPAASPSRSDEVTTTPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGN 485
+++ + + ++ V V IE L+S ++Q A L +A + R + +
Sbjct: 88 VLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLD 147
Query: 486 CGAIPPLLSLLYSEAQLT-QEHAVTALLNLSINDENKA-MIAEAGAIEPLIHVLKSGNGG 543
C +PPLL L + +LT +AV AL NL + + L +L +
Sbjct: 148 CNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTD 207
Query: 544 AKENSAAALFSLS-VLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFH-E 601
++ AL LS + + +G + LV+LL + A A+ N+
Sbjct: 208 VLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDI 267
Query: 602 NKARIIQAGAVKHLVDLMD-PSTGMVDKAVALLANLSTVGEGRL-AIAREGGIPSLVEVV 659
I+ A++ L+ L+ P + +A ++N++ ++ + P+L+ ++
Sbjct: 268 QTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISIL 327
Query: 660 ESGSQRGKENAASILLQLCLH-SPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSH 718
++ R ++ AA + S + +++ G + PL L + + A L +
Sbjct: 328 QTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLEN 387
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 151 bits (383), Expect = 9e-40
Identities = 59/296 (19%), Positives = 107/296 (36%), Gaps = 9/296 (3%)
Query: 432 AASPSRSDEVTTTPYVKKLIEDLNSTSNEIQASAAAELRLLAKH--NMENRMIIGNCGAI 489
A + + +IE + S S E Q SA + R L N +I G +
Sbjct: 7 EAQINNMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVV 66
Query: 490 PPLLSLL-YSEAQLTQEHAVTALLNL-SINDENKAMIAEAGAIEPLIHVLKSGNGGAKEN 547
+ L E Q + L N+ S N ++ +AGA+ I +L S +E
Sbjct: 67 ARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQ 126
Query: 548 SAAALFSLSVL-EEYKAKIGRSGAVKALVDLLGSGT-LRGRKDAATALFNLSIFHENKAR 605
+ AL +++ + + + L+ L L ++A AL NL
Sbjct: 127 AVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPE 186
Query: 606 IIQ-AGAVKHLVDLMD-PSTGMVDKAVALLANLSTVG-EGRLAIAREGGIPSLVEVVESG 662
+ + + L L+ T ++ A L+ LS + A+ G LVE++
Sbjct: 187 FAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHN 246
Query: 663 SQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSH 718
+ A + + ++L A+ L+ L S K++A +S+
Sbjct: 247 DYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISN 302
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 135 bits (340), Expect = 5e-34
Identities = 42/252 (16%), Positives = 83/252 (32%), Gaps = 11/252 (4%)
Query: 472 LAKHN--MENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDEN---KAMIAE 526
+ H + N + ++ +++S++ Q A L + N +I+
Sbjct: 3 MGFHEAQINNMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVIST 62
Query: 527 AGAIEPLIHVLKSGNGGAKENSAAALFSL--SVLEEYKAKIGRSGAVKALVDLLGSGTLR 584
G + + LK + +A + + S + ++GAV ++LL S
Sbjct: 63 PGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFED 122
Query: 585 GRKDAATALFNLSI-FHENKARIIQAGAVKHLVDLM--DPSTGMVDKAVALLANLSTVGE 641
++ A AL N++ + ++ + L+ L M AV L+NL
Sbjct: 123 VQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKS 182
Query: 642 GRLAIAR-EGGIPSLVEVVESGSQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGL 700
A+ + L ++ +A L L V+ G LV L
Sbjct: 183 PPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVEL 242
Query: 701 SQSGTPRAKEKA 712
+ A
Sbjct: 243 LMHNDYKVVSPA 254
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 122 bits (307), Expect = 9e-30
Identities = 48/232 (20%), Positives = 96/232 (41%), Gaps = 6/232 (2%)
Query: 434 SPSRSDEVTTTPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLL 493
+ +P + L L + ++ A A L L+ + + + G L+
Sbjct: 181 KSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLV 240
Query: 494 SLLYSEAQLTQEHAVTALLNL-SINDENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAAL 552
LL A+ A+ N+ + +D +I A++ L+H+L S K+ + +
Sbjct: 241 ELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTI 300
Query: 553 FSLSVL-EEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFH--ENKARIIQA 609
+++ + + AL+ +L + R RK+AA A+ N + E +++
Sbjct: 301 SNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVEL 360
Query: 610 GAVKHLVDLMD-PSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVE 660
G +K L DL+ + +V A+ L N+ +GE + A GI ++E
Sbjct: 361 GCIKPLCDLLTVMDSKIVQVALNGLENILRLGE-QEAKRNGTGINPYCALIE 411
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 104 bits (262), Expect = 4e-24
Identities = 42/212 (19%), Positives = 86/212 (40%), Gaps = 5/212 (2%)
Query: 427 ISECPAASPSRSDEVTTTPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNC 486
+S + V ++L+E L ++ + A + + + +I NC
Sbjct: 216 LSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNC 275
Query: 487 GAIPPLLSLLYSEAQLTQEHAVTALLNL-SINDENKAMIAEAGAIEPLIHVLKSGNGGAK 545
A+ LL LL S + ++ A + N+ + N + +A LI +L++ +
Sbjct: 276 SALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTR 335
Query: 546 ENSAAALFSLSVL--EEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFHENK 603
+ +A A+ + + E + G +K L DLL + + A L N+ E +
Sbjct: 336 KEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQE 395
Query: 604 ARIIQAGAVKHLVDLMDPSTGMVDKAVALLAN 635
A+ G + L++ + G+ DK L ++
Sbjct: 396 AKRNGTG-INPYCALIEEAYGL-DKIEFLQSH 425
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 103 bits (257), Expect = 2e-23
Identities = 38/211 (18%), Positives = 68/211 (32%), Gaps = 8/211 (3%)
Query: 510 ALLNLSINDENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEE---YKAKIG 566
A+ N M +I ++ S + + ++ L E I
Sbjct: 2 AMGFHEAQINNMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVIS 61
Query: 567 RSGAVKALVDLLGSGTLRG-RKDAATALFNL-SIFHENKARIIQAGAVKHLVDLM-DPST 623
G V V+ L + ++A L N+ S +IQAGAV ++L+
Sbjct: 62 TPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFE 121
Query: 624 GMVDKAVALLANLSTVGEG-RLAIAREGGIPSLVEVVESGSQRG-KENAASILLQLCLHS 681
+ ++AV L N++ R + +P L+++ ++ NA L LC
Sbjct: 122 DVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGK 181
Query: 682 PKFCTLVLQEGAVPPLVGLSQSGTPRAKEKA 712
+ L L A
Sbjct: 182 SPPPEFAKVSPCLNVLSWLLFVSDTDVLADA 212
|
| >3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 | Back alignment and structure |
|---|
Score = 176 bits (448), Expect = 4e-48
Identities = 62/292 (21%), Positives = 114/292 (39%), Gaps = 11/292 (3%)
Query: 439 DEVTTTPYVKKLIEDLNSTSN-EIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLY 497
D + + K + L T IQ +A L +A E + + GAIP +SLL
Sbjct: 94 DNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLA 153
Query: 498 SEAQLTQEHAVTALLNLSI-NDENKAMIAEAGAIEPLIHVLKSGNGGAKENSAA--ALFS 554
S E AV AL N++ + ++ + GAI+PL+ +L + ++
Sbjct: 154 SPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWT 213
Query: 555 LSVLEEYK----AKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSI-FHENKARIIQA 609
LS L K + LV LL D+ A+ L+ +E +++
Sbjct: 214 LSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKK 273
Query: 610 GAVKHLVDLM-DPSTGMVDKAVALLANLSTVG-EGRLAIAREGGIPSLVEVVESGSQRGK 667
G V LV L+ +V A+ + N+ T E + G + ++ + +
Sbjct: 274 GVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQ 333
Query: 668 ENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHF 719
+ A + + V+ G VP LVG+ + +++A ++++
Sbjct: 334 KEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNY 385
|
| >3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 | Back alignment and structure |
|---|
Score = 135 bits (341), Expect = 7e-34
Identities = 61/324 (18%), Positives = 125/324 (38%), Gaps = 12/324 (3%)
Query: 407 KELSRRCSKNEKSSELSGEIISECPAASPSRSDEVTTTPYVKKLIEDLNSTSNEIQASAA 466
KE + + + + A + S++ T V+ +++ +NS + E Q A
Sbjct: 19 KETAAAKFERQHMDSPDLGTDDDDKAMADIGSNQGTVNWSVEDIVKGINSNNLESQLQAT 78
Query: 467 AELR-LLAKHNMENRMIIGNCGAIPPLLSLL-YSEAQLTQEHAVTALLNL-SINDENKAM 523
R LL++ I G IP +S L ++ Q + AL N+ S E
Sbjct: 79 QAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKA 138
Query: 524 IAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSV-LEEYKAKIGRSGAVKALVDLLGSGT 582
+ + GAI I +L S + E + AL +++ ++ + + GA+ L+ LL
Sbjct: 139 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPD 198
Query: 583 LRGRKDAA--TALFNLSIFHENKARIIQ----AGAVKHLVDLM-DPSTGMVDKAVALLAN 635
L + LS NK + LV L+ ++ + ++
Sbjct: 199 LSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISY 258
Query: 636 LSTVGEGRL-AIAREGGIPSLVEVVESGSQRGKENAASILLQLCLHSPKFCTLVLQEGAV 694
L+ R+ + ++G +P LV+++ + A + + + + V+ GA+
Sbjct: 259 LTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGAL 318
Query: 695 PPLVGLSQSGTPRAKEKAQQLLSH 718
L + +++A +S+
Sbjct: 319 AVFPSLLTNPKTNIQKEATWTMSN 342
|
| >3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 | Back alignment and structure |
|---|
Score = 134 bits (338), Expect = 2e-33
Identities = 61/324 (18%), Positives = 120/324 (37%), Gaps = 11/324 (3%)
Query: 412 RCSKNEKSSELSGEIISECPAASPSRSDEVTTTPYVKKLIEDLNSTSNEIQASAAAELRL 471
+ S ++ + + ++ V + I L S I A L
Sbjct: 110 GKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGN 169
Query: 472 LAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSI------NDENKAMIA 525
+A R ++ GAI PLL+LL T L ++ + + A
Sbjct: 170 IAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDA 229
Query: 526 EAGAIEPLIHVLKSGNGGAKENSAAALFSLS-VLEEYKAKIGRSGAVKALVDLLGSGTLR 584
+ L+ +L + +S A+ L+ E + + G V LV LLG+ L
Sbjct: 230 VEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELP 289
Query: 585 GRKDAATALFNLSIFH-ENKARIIQAGAVKHLVDLMD-PSTGMVDKAVALLANLSTVGEG 642
A A+ N+ E ++I AGA+ L+ P T + +A ++N++ +
Sbjct: 290 IVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQD 349
Query: 643 RL-AIAREGGIPSLVEVVESGSQRGKENAASILLQLCL-HSPKFCTLVLQEGAVPPLVGL 700
++ + G +P LV V+ + ++ AA + + + ++ G + PL+ L
Sbjct: 350 QIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNL 409
Query: 701 SQSGTPRAKEKAQQLLSHFRNQRE 724
+ + + +S+ E
Sbjct: 410 LSAKDTKIIQVILDAISNIFQAAE 433
|
| >3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 | Back alignment and structure |
|---|
Score = 133 bits (336), Expect = 3e-33
Identities = 46/324 (14%), Positives = 116/324 (35%), Gaps = 17/324 (5%)
Query: 413 CSKNEKSSELSGEIISECPAASPSRSDEVTTTPYVKKLIE-----DLNSTSNEIQASAAA 467
S + SE + + + D V + L+ DL++ + +
Sbjct: 153 ASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTW 212
Query: 468 ELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSIN-DENKAMIAE 526
L L ++ + +P L+ LL+ + A+ L+ +E M+ +
Sbjct: 213 TLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVK 272
Query: 527 AGAIEPLIHVLKSGNGGAKENSAAALFSLSVL-EEYKAKIGRSGAVKALVDLLGSGTLRG 585
G + L+ +L + + A+ ++ +E K+ +GA+ LL +
Sbjct: 273 KGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNI 332
Query: 586 RKDAATALFNL-SIFHENKARIIQAGAVKHLVDL-MDPSTGMVDKAVALLANLSTVG--E 641
+K+A + N+ + + +++ G V LV + +A + N ++ G E
Sbjct: 333 QKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVE 392
Query: 642 GRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCL------HSPKFCTLVLQEGAVP 695
+ + G I L+ ++ + + + + + + K ++ + G +
Sbjct: 393 QIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLD 452
Query: 696 PLVGLSQSGTPRAKEKAQQLLSHF 719
+ L + + + L+ +
Sbjct: 453 KIEALQRHENESVYKASLNLIEKY 476
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 | Back alignment and structure |
|---|
Score = 155 bits (393), Expect = 1e-40
Identities = 56/295 (18%), Positives = 122/295 (41%), Gaps = 7/295 (2%)
Query: 432 AASPSRSDEVTTTPYVKKLIEDLNSTSNEIQASAAAELR-LLAKHNMENRMIIGNCGAIP 490
+ S + + ++ + LNS + Q SA + R +L++ + ++ G +P
Sbjct: 74 SVSADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVP 133
Query: 491 PLLSLL-YSEAQLTQEHAVTALLNL-SINDENKAMIAEAGAIEPLIHVLKSGNGGAKENS 548
L+ + ++ ++ Q A AL N+ S ++ +A A+ I +L +G+ KE +
Sbjct: 134 RLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQA 193
Query: 549 AAALFSLSV-LEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFHENKARII 607
AL +++ +Y+ + + A++ ++ L S + A L NL + +
Sbjct: 194 IWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWS 253
Query: 608 Q-AGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGEGRLAIARE-GGIPSLVEVVESGSQ 664
+ A+ L L+ T + A ++ LS + + + LVE++ S
Sbjct: 254 VVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHEST 313
Query: 665 RGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHF 719
+ A + + + +V+ G +P L L S K++A +S+
Sbjct: 314 LVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNI 368
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 | Back alignment and structure |
|---|
Score = 155 bits (392), Expect = 2e-40
Identities = 61/315 (19%), Positives = 120/315 (38%), Gaps = 8/315 (2%)
Query: 412 RCSKNEKSSELSGEIISECPAASPSRSDEVTTTPYVKKLIEDLNSTSNEIQASAAAELRL 471
R ++ E + ++ + + +++ V V I+ L + S E++ A L
Sbjct: 140 RENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGN 199
Query: 472 LAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKA-MIAEAGAI 530
+A + + R + C A+ P+L L S A L NL + + + A+
Sbjct: 200 VAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQAL 259
Query: 531 EPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIG-RSGAVKALVDLLGSGTLRGRKDA 589
L ++ S + ++ A+ LS + + K LV+LL + + A
Sbjct: 260 PTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPA 319
Query: 590 ATALFNLSIF-HENKARIIQAGAVKHLVDLMD-PSTGMVDKAVALLANLSTVG-EGRLAI 646
A+ N+ +I AG + L L+ P + +A ++N++ E A+
Sbjct: 320 LRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAV 379
Query: 647 AREGGIPSLVEVVESGSQRGKENAASILLQLCL---HSPKFCTLVLQEGAVPPLVGLSQS 703
IP LV+++E + K+ A + P ++ +G + PL L +
Sbjct: 380 IDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEI 439
Query: 704 GTPRAKEKAQQLLSH 718
R E L +
Sbjct: 440 ADNRIIEVTLDALEN 454
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 | Back alignment and structure |
|---|
Score = 109 bits (274), Expect = 3e-25
Identities = 51/260 (19%), Positives = 101/260 (38%), Gaps = 19/260 (7%)
Query: 434 SPSRSDEVTTTPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLL 493
+ D + + L + + S E A + L+ E + + L+
Sbjct: 246 KKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLV 305
Query: 494 SLLYSEAQLTQEHAVTALLNLSI-NDENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAAL 552
LL E+ L Q A+ A+ N+ ND ++ AG + L +L S K+ + +
Sbjct: 306 ELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTI 365
Query: 553 FSLSVL-EEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFHENKARIIQA-- 609
+++ E + + + LV LL + +K+A A+ N S + II+
Sbjct: 366 SNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLV 425
Query: 610 --GAVKHLVDLMD-PSTGMVDKAVALLANLSTVGEGR------------LAIAREGGIPS 654
G +K L DL++ +++ + L N+ +GE I + GG+
Sbjct: 426 SQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEK 485
Query: 655 LVEVVESGSQRGKENAASIL 674
+ ++ + + E A I+
Sbjct: 486 IFNCQQNENDKIYEKAYKII 505
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 | Back alignment and structure |
|---|
Score = 50.0 bits (119), Expect = 2e-06
Identities = 26/142 (18%), Positives = 48/142 (33%), Gaps = 15/142 (10%)
Query: 426 IISECPAASPSRSDEVTTTPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIG- 484
IS A + + V + L++ L + + A + + ++ II
Sbjct: 364 TISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRY 423
Query: 485 --NCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKA------------MIAEAGAI 530
+ G I PL LL E + AL N+ E I +AG +
Sbjct: 424 LVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGM 483
Query: 531 EPLIHVLKSGNGGAKENSAAAL 552
E + + ++ N E + +
Sbjct: 484 EKIFNCQQNENDKIYEKAYKII 505
|
| >2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C Length = 179 | Back alignment and structure |
|---|
Score = 144 bits (364), Expect = 5e-40
Identities = 37/132 (28%), Positives = 57/132 (43%), Gaps = 5/132 (3%)
Query: 180 QELLKESLAVEMERIRAERNQNKGHSDQMNYIVDLISHIRDCMLKIERF-----EATSGV 234
L + + E ER +R + S I + S ++ ++ E
Sbjct: 42 HAYLSKLILAEKERELDDRVKQSDDSQNGGDISKMKSKHDKYLMDMDELFSQVDEKRKKR 101
Query: 235 PIPPYFRCPLSLELMIDPVIVASGQTYERVFIQKWLDHGLNICPKTRQTLAHTNLIPNYT 294
IP Y +S ELM +P I SG TY+R I++ L + P TR L LIPN
Sbjct: 102 EIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLA 161
Query: 295 VKAMIENWCEEN 306
+K +I+ + +EN
Sbjct: 162 MKEVIDAFIQEN 173
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 | Back alignment and structure |
|---|
Score = 151 bits (381), Expect = 2e-39
Identities = 56/308 (18%), Positives = 103/308 (33%), Gaps = 38/308 (12%)
Query: 447 VKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEH 506
+ K ++ L+S + QA A ++ + + + G I L+ LL S Q Q+
Sbjct: 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQA 63
Query: 507 AVTALLNLSI-NDENKAMIAEAGAIEPLIHVL-KSGNGGAKENSAAALFSLSVLEEYKAK 564
A AL NL + NK I + +L ++GN ++ L++LS +E K +
Sbjct: 64 AAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEE 123
Query: 565 IGRSGAVKALVDLL---GSGTLRG-------------RKDAATALFNLSIFHENKARIIQ 608
+ A+ L D + SG G +A L NLS + +
Sbjct: 124 LIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRN 182
Query: 609 -AGAVKHLVDLMDPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVESGSQ--- 664
+G + L+ + + N V L+ + +P+ +E ++
Sbjct: 183 YSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHN-LSYRLDAEVPTRYRQLEYNARNAY 241
Query: 665 --------------RGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKE 710
+ N L +PK + A+ + L A
Sbjct: 242 TEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATL 301
Query: 711 KAQQLLSH 718
+A
Sbjct: 302 EACAGALQ 309
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 | Back alignment and structure |
|---|
Score = 99.1 bits (246), Expect = 4e-22
Identities = 44/294 (14%), Positives = 96/294 (32%), Gaps = 32/294 (10%)
Query: 455 NSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLL------YSEAQLTQEHAV 508
E+ +A LR L+ + + + G I L++ + + E+ +
Sbjct: 153 EVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCM 212
Query: 509 TALLNLSINDENKAMIAEAGAIEPLIHVLKSGNGGA----------KENSAAALFSLSVL 558
L NLS + + + + N L
Sbjct: 213 CVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETN 272
Query: 559 EEYKAKIGRSGAVKALVDLLGSGTLRGRKDAAT-ALFNLSIFHENKAR------IIQAGA 611
+ + S A++ ++L+G +A AL NL+ + ++
Sbjct: 273 PKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKG 332
Query: 612 VKHLVDLM-DPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVESGSQRGK--- 667
+ + L+ ++ +V +LL+N+S + P + ++ S +
Sbjct: 333 LPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMG-NQVFPEVTRLLTSHTGNTSNSE 391
Query: 668 ---ENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSG-TPRAKEKAQQLLS 717
+A + L P+ + ++ L +S +P+A E A+ LLS
Sbjct: 392 DILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLS 445
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 | Back alignment and structure |
|---|
Score = 91.4 bits (226), Expect = 1e-19
Identities = 35/252 (13%), Positives = 74/252 (29%), Gaps = 23/252 (9%)
Query: 447 VKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEH 506
V+ + L++ S + A R L + + G ++ +
Sbjct: 208 VENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSD------KMMNNN 261
Query: 507 AVTALLNLSINDENKAMIAEAGAIEPLIHVLKSG-NGGAKENSAAALFSLSVL------E 559
L N + + + AI ++++ E A AL +L+
Sbjct: 262 YDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSG 321
Query: 560 EYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFHENKARIIQAGAVKHLVDLM 619
+ + + + LL SG + A+ L N+S + + L+
Sbjct: 322 MSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQV-FPEVTRLL 380
Query: 620 DPSTGMVDK-------AVALLANLSTVG-EGRLAIAREGGIPSLVEVVESG-SQRGKENA 670
TG A + NL + + +++ + S S + E A
Sbjct: 381 TSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAA 440
Query: 671 ASILLQLCLHSP 682
+L +
Sbjct: 441 RLLLSDMWSSKE 452
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 | Back alignment and structure |
|---|
Score = 90.3 bits (223), Expect = 3e-19
Identities = 23/188 (12%), Positives = 60/188 (31%), Gaps = 15/188 (7%)
Query: 431 PAASPSRSDEVTTTPYVKKLIEDLNSTSNEIQASAAAE-LRLLAKHN-----MENRMIIG 484
+P S + + ++ + + + + A A L+ L +++I
Sbjct: 269 EETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGL 328
Query: 485 NCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAMIAEAGAIEPLIHVLKSGNGGA 544
+P + LL S + L N+S + ++ + +L S G
Sbjct: 329 KEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQV-FPEVTRLLTSHTGNT 387
Query: 545 KENSAAALFSLSVL-------EEYKAKIGRSGAVKALVDLLGSG-TLRGRKDAATALFNL 596
+ + + + + S + +++L S + + + A L ++
Sbjct: 388 SNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDM 447
Query: 597 SIFHENKA 604
E +
Sbjct: 448 WSSKELQG 455
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 | Back alignment and structure |
|---|
Score = 48.3 bits (114), Expect = 6e-06
Identities = 12/68 (17%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
Query: 458 SNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYS-EAQLTQEHAVTALLNLSI 516
S +I +SA +R L + + + +++L S + E A L ++
Sbjct: 390 SEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWS 449
Query: 517 NDENKAMI 524
+ E + ++
Sbjct: 450 SKELQGVL 457
|
| >1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2 Length = 78 | Back alignment and structure |
|---|
Score = 138 bits (350), Expect = 3e-39
Identities = 45/73 (61%), Positives = 55/73 (75%)
Query: 236 IPPYFRCPLSLELMIDPVIVASGQTYERVFIQKWLDHGLNICPKTRQTLAHTNLIPNYTV 295
P YFRCP+SLELM DPVIV++GQTYER IQKWLD G CPK+++TL H L PNY +
Sbjct: 5 FPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVL 64
Query: 296 KAMIENWCEENNL 308
K++I WCE N +
Sbjct: 65 KSLIALWCESNGI 77
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584 | Back alignment and structure |
|---|
Score = 151 bits (381), Expect = 1e-38
Identities = 69/378 (18%), Positives = 132/378 (34%), Gaps = 67/378 (17%)
Query: 402 MLPASKELSRRCSKNEKSSELSGEIISECPAASPSRSDEVTTTPYVKKLIEDLNSTSNEI 461
+P+ + +++E+ S S + + + P+ P + ++I L + +
Sbjct: 10 EVPSDQYYWAPLAQHERGSLASLDSLRKGGPPPPNWRQ-----PELPEVIAMLGFRLDAV 64
Query: 462 QASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSI--NDE 519
+++AAA L+ L N + + + IP L+ LL + A AL N+S + +
Sbjct: 65 KSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQD 124
Query: 520 NKAMIAEAGAIEPLIHVLKSGNG-GAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLL 578
NK I + L+ +L+ E L++LS + K +I A+ AL D +
Sbjct: 125 NKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVD-HALHALTDEV 183
Query: 579 ---GSGTLRGRKDA---------------ATALFNLSIFHEN--KARIIQAGAVKHLVDL 618
SG R + A L N+S + G V L+ +
Sbjct: 184 IIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFI 243
Query: 619 M-------DPSTGMVDKAVALLANLSTVGE--------------------------GRLA 645
+ D + +V+ V LL NLS G
Sbjct: 244 VQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYEL 303
Query: 646 IAREGGIPSLVEVVESGSQRG-KENAASILLQLCLH----SPKFCTLVLQEGAVPPLVGL 700
+ + + + +++ E +A + LC + + QE A+ + L
Sbjct: 304 LFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADL 363
Query: 701 SQSGTPRAKEKAQQLLSH 718
+ R + A L +
Sbjct: 364 LTNEHERVVKAASGALRN 381
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584 | Back alignment and structure |
|---|
Score = 110 bits (275), Expect = 2e-25
Identities = 42/261 (16%), Positives = 89/261 (34%), Gaps = 24/261 (9%)
Query: 445 PYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQ 504
+++ D + Q + L + +P ++++L +
Sbjct: 6 MIGEEVPSDQYYWAPLAQHERGSLASLDSLRKGGPPPPNWRQPELPEVIAMLGFRLDAVK 65
Query: 505 EHAVTALLNLSI-NDENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVL--EEY 561
+A L +L ND+ K + + I L+ +L + AL ++S ++
Sbjct: 66 SNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDN 125
Query: 562 KAKIGRSGAVKALVDLLGSGT-LRGRKDAATALFNLSIFHENKARIIQAGAVKHLVDLMD 620
K I V ALV LL + + L+NLS K I+ +++
Sbjct: 126 KIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVII 185
Query: 621 PSTGM------------------VDKAVALLANLSTVGE--GRLAIAREGGIPSLVEVVE 660
P +G + L N+S+ R +G + +L+ +V+
Sbjct: 186 PHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQ 245
Query: 661 SGSQRGKENAASILLQLCLHS 681
+ + ++ + +CL
Sbjct: 246 AEIGQKDSDSKLVENCVCLLR 266
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584 | Back alignment and structure |
|---|
Score = 101 bits (252), Expect = 1e-22
Identities = 44/247 (17%), Positives = 93/247 (37%), Gaps = 21/247 (8%)
Query: 384 YIHSRSESASSAISSVEYMLPASKELSRRCSK----NEKSSELSGEIISECPAASPSRSD 439
+ + S VE + + LS + + E+ E + + + + +
Sbjct: 243 IVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYE 302
Query: 440 EVTTTPYVKKLIEDLNSTSN-EIQASAAAELRLLAKHNM----ENRMIIGNCGAIPPLLS 494
+ V+ I L + I ++A ++ L R + A+ +
Sbjct: 303 LLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIAD 362
Query: 495 LLYSEAQLTQEHAVTALLNLSINDENKAMIAEAGAIEPLIHVLKSGNGGAKENS-----A 549
LL +E + + A AL NL+++ NK +I + AI L+ L G + N
Sbjct: 363 LLTNEHERVVKAASGALRNLAVDARNKELIGK-HAIPNLVKNLPGGQQNSSWNFSEDTVI 421
Query: 550 AALFSLSVL----EEYKAKIGRSGAVKALVDLLGSGTL--RGRKDAATALFNLSIFHENK 603
+ L +++ + E K+ + ++ LV + SG + + AA L + + E +
Sbjct: 422 SILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKELR 481
Query: 604 ARIIQAG 610
+ + G
Sbjct: 482 KPLEKEG 488
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584 | Back alignment and structure |
|---|
Score = 97.7 bits (242), Expect = 2e-21
Identities = 54/356 (15%), Positives = 114/356 (32%), Gaps = 73/356 (20%)
Query: 447 VKKLIEDL-NSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLL--------- 496
V L+ L + ++ L L+ H+ +M I A+ L +
Sbjct: 135 VPALVRLLRKARDMDLTEVITGTLWNLSSHD-SIKMEIV-DHALHALTDEVIIPHSGWER 192
Query: 497 ---------YSEAQLTQEHAVTALLNLSINDEN--KAMIAEAGAIEPLIHVLKSGNGGAK 545
+ E + + L N+S + + G ++ LI ++++ G
Sbjct: 193 EPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKD 252
Query: 546 ------ENSAAALFSLSVLEEY--------------------------KAKIGRSGAVKA 573
EN L +LS + + V+
Sbjct: 253 SDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRI 312
Query: 574 LVDLLGSGTLRG-RKDAATALFNLSIFH-----ENKARIIQAGAVKHLVD-LMDPSTGMV 626
+ LL + +A A+ NL ++ + Q A+ + D L + +V
Sbjct: 313 YISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVV 372
Query: 627 DKAVALLANLSTVGEGRLAIAREGGIPSLVEVVESGSQRGKE--------NAASILLQLC 678
A L NL+ + I + IP+LV+ + G Q + + + ++
Sbjct: 373 KAASGALRNLAVDARNKELIGK-HAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVI 431
Query: 679 LHSPKFCTLVLQEGAVPPLVGLSQSG--TPRAKEKAQQLLSHFRNQREGSTGKKKS 732
+ + + + + LV +++SG + + A +L +E +K
Sbjct: 432 AENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKELRKPLEKE 487
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584 | Back alignment and structure |
|---|
Score = 94.2 bits (233), Expect = 3e-20
Identities = 38/235 (16%), Positives = 83/235 (35%), Gaps = 19/235 (8%)
Query: 451 IEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLL-YSEAQLTQEHAVT 509
+ + Q +A ++ + +SLL S+ E +
Sbjct: 272 VHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAG 331
Query: 510 ALLNLSIND-----ENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAK 564
A+ NL ++ + + A+ + +L + + + ++ AL +L+V K
Sbjct: 332 AIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKEL 391
Query: 565 IGRSGAVKALVDLLGSGTLRGRKD--------AATALFNLSIFH-ENKARIIQAGAVKHL 615
IG+ A+ LV L G + + + + E ++ + ++ L
Sbjct: 392 IGK-HAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKL 450
Query: 616 VDLM---DPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVESGSQRGK 667
V + + S V A +L + E R + +EG S +V + + R +
Sbjct: 451 VLINKSGNRSEKEVRAAALVLQTIWGYKELRKPLEKEGWKKSDFQVNLNNASRSQ 505
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810 | Back alignment and structure |
|---|
Score = 140 bits (353), Expect = 1e-34
Identities = 56/289 (19%), Positives = 99/289 (34%), Gaps = 13/289 (4%)
Query: 447 VKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEH 506
L + S+ Q A L + E R + G + LL + + + H
Sbjct: 497 TTALCALAKTESHNSQELIARVLNAVC-GLKELRGKVVQEGGVKALLRMALEGTEKGKRH 555
Query: 507 AVTALLNLSINDENKAMIAEAG---AIEPLIHVLKSG-NGGAKENSAAALFSL-SVLEEY 561
A AL + I + + I PL+++L+ S AL +L S+ E
Sbjct: 556 ATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESV 615
Query: 562 KAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFHENKARIIQA-GAVKHLVDLMD 620
+ +I + V + L L + AA L NL + + VK L L +
Sbjct: 616 RQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCE 675
Query: 621 -PSTGMVDKAVALLANLSTVGEG--RLAIAREGGIPSLVEVVESGSQRGKENAASILLQL 677
LA +++V +A + L ++ + S + I+L +
Sbjct: 676 DEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNM 735
Query: 678 CLHSPKFCTLVLQEGAVPPLVGLSQ---SGTPRAKEKAQQLLSHFRNQR 723
+ + + + L GL Q +A+E A Q L+ R
Sbjct: 736 INAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERYR 784
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810 | Back alignment and structure |
|---|
Score = 137 bits (345), Expect = 1e-33
Identities = 59/331 (17%), Positives = 107/331 (32%), Gaps = 39/331 (11%)
Query: 428 SECPAASPSRSDEVTTTPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCG 487
+ A P + +I+ AA L L +I +
Sbjct: 362 GQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKA 421
Query: 488 AIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAM------------------------ 523
+I L+ L Q VT +NL E + M
Sbjct: 422 SIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDV 481
Query: 524 ---------IAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKAL 574
+A G L + K+ + ++E A L ++ L+E + K+ + G VKAL
Sbjct: 482 DFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKAL 541
Query: 575 VDLLGSGTLRGRKDAATALFNLSIFHENKARIIQAG---AVKHLVDLMDPSTGMVDKAVA 631
+ + GT +G++ A AL + I + ++ L++L+ ++ +
Sbjct: 542 LRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFES 601
Query: 632 LLA--NLSTVGEG-RLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCLHSPKFCTLV 688
L+A NL+++ E R I +E G+ + + AA L L +
Sbjct: 602 LMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFE 661
Query: 689 LQEGAVPPLVGLSQSGTPRAKEKAQQLLSHF 719
V L L + L+
Sbjct: 662 GNNDRVKFLALLCEDEDEETATACAGALAII 692
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810 | Back alignment and structure |
|---|
Score = 78.7 bits (193), Expect = 3e-15
Identities = 28/175 (16%), Positives = 59/175 (33%), Gaps = 3/175 (1%)
Query: 432 AASPSRSDEVTTTPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPP 491
+ + S + V K+ L + +AA L L +M GN +
Sbjct: 610 SMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKF 669
Query: 492 LLSLLYSEAQLTQEHAVTALLNLSINDEN--KAMIAEAGAIEPLIHVLKSGNGGAKENSA 549
L L E + T AL ++ + ++A A ++ L ++ + + +
Sbjct: 670 LALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGI 729
Query: 550 AALFSL-SVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFHENK 603
+ ++ + EE K+ + ++ L L K A L+ +
Sbjct: 730 VIILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERYR 784
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810 | Back alignment and structure |
|---|
Score = 69.1 bits (168), Expect = 3e-12
Identities = 20/151 (13%), Positives = 51/151 (33%), Gaps = 2/151 (1%)
Query: 414 SKNEKSSELSGEIISECPAASPSRSDEVTTTPYVKKLIEDLNSTSNEIQASAAAELRLLA 473
+ + + + + + VK L E + A L ++
Sbjct: 634 EDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIIT 693
Query: 474 KHNME-NRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNL-SINDENKAMIAEAGAIE 531
+++ I+ + L +L+ + + Q + +LN+ + +E + E +E
Sbjct: 694 SVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAGEEIAKKLFETDIME 753
Query: 532 PLIHVLKSGNGGAKENSAAALFSLSVLEEYK 562
L + + + + A L+ E Y+
Sbjct: 754 LLSGLGQLPDDTRAKAREVATQCLAAAERYR 784
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810 | Back alignment and structure |
|---|
Score = 42.9 bits (100), Expect = 3e-04
Identities = 38/400 (9%), Positives = 106/400 (26%), Gaps = 82/400 (20%)
Query: 393 SSAISSVEYMLPASKELSRRCSKNEKSSELSGEIISECPAASPSRSDEVTTTPYVKKLIE 452
+ + V+ M+ + +L+ K ++ + E + ++ + + K+
Sbjct: 2 AKTSTKVKQMMDLTFDLATPIDKRRAAANNLVVLAKE-----QTGAELLYKDHCIAKVAS 56
Query: 453 DLNSTSN-EIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHA---- 507
+ +I + + L ++++E + +P + +L + + A
Sbjct: 57 LTKVEKDQDIYVNMVHLVAALCENSVERTKGVLTELGVPWFMRVLDQKHENCVSTAQFCL 116
Query: 508 --------------------------------VTALLNLSINDENKAMIAEAGAIEPLIH 535
+ L SI D + A G IE +
Sbjct: 117 QTILNALSGLKNKPDSKPDKELCTRNNREIDTLLTCLVYSITDRTISGAARDGVIELITR 176
Query: 536 VLKSGNGGAKENS-----------------------------------AAALFSLSVLEE 560
+ E + L +
Sbjct: 177 NVHYTALEWAERLVEIRGLCRLLDVCSELEDYKYESAMDITGSSSTIASVCLARIYENMY 236
Query: 561 YKA--KIGRSGAVKALVDLLGSGTLRGRKDAATALFNL-SIFHENKARIIQA-GAVKHLV 616
Y + + D L + + + A+ L + + +++ G ++ ++
Sbjct: 237 YDEAKARFTDQIDEYIKDKLLAPDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMIL 296
Query: 617 DLMDPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVESGSQRGKENAASILLQ 676
+ + + ++ + + E G+ L + S + + A L +
Sbjct: 297 AMATTDDELQQRVACECLIAASSKKDKAKALCEQGVDILKRLYHSKNDGIRVRALVGLCK 356
Query: 677 LCLHS-PKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQL 715
L + +GA L + + +
Sbjct: 357 LGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIR 396
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233 | Back alignment and structure |
|---|
Score = 128 bits (324), Expect = 6e-34
Identities = 45/220 (20%), Positives = 82/220 (37%), Gaps = 30/220 (13%)
Query: 447 VKKLIEDLNSTSN--EIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQ 504
+++ + L + ++AA ++ E R + I LL LL + + Q
Sbjct: 10 LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQ 69
Query: 505 EHAVTALLNLSI-NDENKAMIAEAGAIEPLIHVLKSG-NGGAKENSAAALFSLSVLEEYK 562
AL NL +++NK +AE + L+ VLK + K+ L++LS ++ K
Sbjct: 70 RAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLK 129
Query: 563 AKIGRSGAVKALVDLL---GSGTLRGRKD-------------AATALFNLSIFH-ENKAR 605
+ A+ L + + SG G L N+S + +
Sbjct: 130 NLMIT-EALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGADGRKA 188
Query: 606 IIQA-GAVKHLVDLM-------DPSTGMVDKAVALLANLS 637
+ + G + LV + P + V +L NLS
Sbjct: 189 MRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLS 228
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233 | Back alignment and structure |
|---|
Score = 62.3 bits (151), Expect = 5e-11
Identities = 24/155 (15%), Positives = 55/155 (35%), Gaps = 7/155 (4%)
Query: 571 VKALVDLLGSG--TLRGRKDAATALFNLSIFH-ENKARIIQAGAVKHLVDLMD-PSTGMV 626
++ V +L + AAT + + E + R+ Q + L+ L+ + +
Sbjct: 10 LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQ 69
Query: 627 DKAVALLANLSTVG-EGRLAIAREGGIPSLVEVVESGSQRG-KENAASILLQLCLHSPKF 684
L NL + +L +A G+P L++V++ K+ +L L +
Sbjct: 70 RAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKL- 128
Query: 685 CTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHF 719
L++ E + + + + +
Sbjct: 129 KNLMITEALLTLTENIIIPFSGWPEGDYPKANGLL 163
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233 | Back alignment and structure |
|---|
Score = 53.8 bits (129), Expect = 3e-08
Identities = 18/116 (15%), Positives = 41/116 (35%), Gaps = 5/116 (4%)
Query: 609 AGAVKHLVDLM---DPSTGMVDKAVALLANLS-TVGEGRLAIAREGGIPSLVEVVESGSQ 664
++ V ++ + A + + E R + + GI L+++++ ++
Sbjct: 7 EMTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNE 66
Query: 665 RGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVG-LSQSGTPRAKEKAQQLLSHF 719
+ L L V + VP L+ L Q+ K++ LL +
Sbjct: 67 DVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNL 122
|
| >2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B Length = 100 | Back alignment and structure |
|---|
Score = 117 bits (296), Expect = 9e-32
Identities = 29/97 (29%), Positives = 39/97 (40%), Gaps = 2/97 (2%)
Query: 211 IVDLISHIRDCMLKIERFEATSGVPIPPYFRCPLSLELMIDPVIVASGQTYERVFIQKWL 270
+ + + K R E P FR PL LM DPV + SG +R I + L
Sbjct: 2 SHKFAEKVEEIVAKNARAEIDYSD-APDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHL 60
Query: 271 DHGLNICPKTRQTLAHTNLIPNYTVKAMIENWCEENN 307
+ P RQTL + L P +K I+ W E
Sbjct: 61 LNS-PTDPFNRQTLTESMLEPVPELKEQIQAWMREKQ 96
|
| >2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus} Length = 85 | Back alignment and structure |
|---|
Score = 115 bits (289), Expect = 6e-31
Identities = 25/72 (34%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Query: 236 IPPYFRCPLSLELMIDPVIVASGQTYERVFIQKWLDHGLNICPKTRQTLAHTNLIPNYTV 295
P FR PL LM DPV + SG +R I + L + P RQ L + L P +
Sbjct: 11 APDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLNS-PTDPFNRQMLTESMLEPVPEL 69
Query: 296 KAMIENWCEENN 307
K I+ W E
Sbjct: 70 KEQIQAWMREKQ 81
|
| >1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2 Length = 98 | Back alignment and structure |
|---|
Score = 107 bits (268), Expect = 6e-28
Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 2/84 (2%)
Query: 224 KIERFEATSGVPIPPYFRCPLSLELMIDPVIVASGQ-TYERVFIQKWLDHGLNICPKTRQ 282
+++ E + F P+ LM DPV++ S + T +R I + L P R
Sbjct: 7 GLQQQEEETYADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSD-QTDPFNRS 65
Query: 283 TLAHTNLIPNYTVKAMIENWCEEN 306
L + PN +K I+ W E
Sbjct: 66 PLTMDQIRPNTELKEKIQRWLAER 89
|
| >3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A Length = 968 | Back alignment and structure |
|---|
Score = 103 bits (257), Expect = 8e-23
Identities = 24/143 (16%), Positives = 52/143 (36%), Gaps = 9/143 (6%)
Query: 165 DHLVKIIESLGLTSNQELLKESLAVEMERIRAERNQNKGHSDQMNYIVDLISHIRDCMLK 224
+ + + N+ L ++ + R + + +++ + +
Sbjct: 824 SEFISAVAKDERSFNRNLFVRAVDI------LGRKTGLASPEFIEKLLNFANKAEEQRKA 877
Query: 225 IERFEATSGVPIPPYFRCPLSLELMIDPVIVA-SGQTYERVFIQKWLDHGLNICPKTRQT 283
E + G +P F PL +M DPVI+ S +R I+ L + P R
Sbjct: 878 DEEEDLEYG-DVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLSD-STDPFNRMP 935
Query: 284 LAHTNLIPNYTVKAMIENWCEEN 306
L ++ PN ++ I + ++
Sbjct: 936 LKLEDVTPNEELRQKILCFKKQK 958
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 | Back alignment and structure |
|---|
Score = 95.9 bits (238), Expect = 7e-22
Identities = 48/257 (18%), Positives = 86/257 (33%), Gaps = 14/257 (5%)
Query: 440 EVTTTPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLS-LLYS 498
V + P E + + + A L L NM+N + L+ L +
Sbjct: 35 RVLSQPMPPTAGEAEQAADQQEREGALELLADLC-ENMDNAADFCQLSGMHLLVGRYLEA 93
Query: 499 EAQLTQEHAVTALLNL-SINDENKAMIAEAGAIEPLIHVLKS-GNGGAKENSAAALFSLS 556
A + A + + + GA+ L+ +L + + A+ L
Sbjct: 94 GAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLV 153
Query: 557 V-LEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFH-ENKARIIQAGAVKH 614
E + R L+ + + + +A L NL + H E+K + G V+
Sbjct: 154 REQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQ 213
Query: 615 LVDLM-DPSTGMVDKAVALLANLSTVGEGRLAIAREGGIP--SLVEVVESGSQRGKENA- 670
LV L+ + + + L +L T + RE + L+ Q+ +E
Sbjct: 214 LVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQE 273
Query: 671 ----ASILLQLCLHSPK 683
LLQ C SP
Sbjct: 274 ELEFCEKLLQTCFSSPA 290
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 | Back alignment and structure |
|---|
Score = 81.6 bits (201), Expect = 4e-17
Identities = 41/222 (18%), Positives = 81/222 (36%), Gaps = 6/222 (2%)
Query: 477 MENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAMIAEAGAIEPLI-H 535
M++ + + + P + Q +E A+ L +L N +N A + + L+
Sbjct: 30 MKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGR 89
Query: 536 VLKSGNGGAKENSAAALFSLSVL-EEYKAKIGRSGAVKALVDLLGSGT-LRGRKDAATAL 593
L++G G + +A + + S + ++ GA++ L+ LL R A A+
Sbjct: 90 YLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAI 149
Query: 594 FNLSI-FHENKARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVG-EGRLAIAREG 650
L + ++ L+ M + K+ LL NL E + + G
Sbjct: 150 SCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMG 209
Query: 651 GIPSLVEVVESGSQRGKENAASILLQLCLHSPKFCTLVLQEG 692
+ LV +V + E+ L L P+ +
Sbjct: 210 MVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPE 251
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 | Back alignment and structure |
|---|
Score = 77.8 bits (191), Expect = 7e-16
Identities = 40/213 (18%), Positives = 75/213 (35%), Gaps = 10/213 (4%)
Query: 517 NDENKAM-----IAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRSGAV 571
E + M + ++ + +E + L L + A + +
Sbjct: 24 RGEVEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGM 83
Query: 572 KALVD-LLGSGTLRGRKDAATALFNLSIFH-ENKARIIQAGAVKHLVDLM--DPSTGMVD 627
LV L +G R AA + S + +++ GA++ L+ L+ D +
Sbjct: 84 HLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRV 143
Query: 628 KAVALLANLST-VGEGRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCLHSPKFCT 686
KA+ ++ L G L R G L+ ++ Q+ K +A +L L + P+
Sbjct: 144 KALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKG 203
Query: 687 LVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHF 719
+ G V LV L ++ E L
Sbjct: 204 TLCSMGMVQQLVALVRTEHSPFHEHVLGALCSL 236
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 | Back alignment and structure |
|---|
Score = 75.1 bits (184), Expect = 7e-15
Identities = 26/167 (15%), Positives = 63/167 (37%), Gaps = 3/167 (1%)
Query: 414 SKNEKSSELSGEIISECPAASPSRSDEVTTTPYVKKLIEDLNSTSN-EIQASAAAELRLL 472
+ + ++I C + ++V ++KL+ L+ + ++ A + L
Sbjct: 93 AGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCL 152
Query: 473 AKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSIND-ENKAMIAEAGAIE 531
+ + L+ + + Q + + L NL + E+K + G ++
Sbjct: 153 VREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQ 212
Query: 532 PLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLL 578
L+ ++++ + E+ AL SL + R + L +LL
Sbjct: 213 QLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELG-LEELL 258
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281 | Back alignment and structure |
|---|
Score = 95.4 bits (237), Expect = 8e-22
Identities = 39/191 (20%), Positives = 72/191 (37%), Gaps = 12/191 (6%)
Query: 116 RLLQSSPSNSSMSAVQHCMQEIHCLKQERIMEHITKAMRGLQDDTIRCTDHLVKIIESLG 175
R + + + +++ I + R Q+ + +L ++I +
Sbjct: 97 RAYSLAKEQRL--NFGDDIPSALRIAKKKRWNSIEE-RRIHQESELH--SYLTRLIAAER 151
Query: 176 LTSNQELLKESLAVEMERIRAERNQNKGHSDQMNYIVDLISHIRDCMLKIERFEATSGVP 235
+E + + + Q + Y+ D+ K ++ +
Sbjct: 152 ERELEEC-QRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEKRKKRD------ 204
Query: 236 IPPYFRCPLSLELMIDPVIVASGQTYERVFIQKWLDHGLNICPKTRQTLAHTNLIPNYTV 295
IP Y +S ELM +P I SG TY+R I++ L + P TR L LIPN +
Sbjct: 205 IPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAM 264
Query: 296 KAMIENWCEEN 306
K +I+ + EN
Sbjct: 265 KEVIDAFISEN 275
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 86.8 bits (214), Expect = 1e-17
Identities = 103/647 (15%), Positives = 191/647 (29%), Gaps = 196/647 (30%)
Query: 95 HSEPLMMKIQSSSLEICH--ILYRLLQSSPSNSSMSAVQHCMQEIHCLKQERIMEHITKA 152
H M ++ + + IL + N VQ + I L +E I +HI
Sbjct: 1 HHHHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSI--LSKEEI-DHIIM- 56
Query: 153 MRGLQDDTIRCTDHLVKIIESLGLTSNQELLKESLAVE----MERIRAERNQNKGHSDQM 208
D + T L + S Q+ ++E L + M I+ E+ Q +
Sbjct: 57 ----SKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMY 112
Query: 209 NYIVDLISHIRDCMLKIERFEATSGVPIPPYF--RCPLSLELM-----IDP---VIV--- 255
D + Y R L+L + P V++
Sbjct: 113 IEQRDRLY--------------NDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGV 158
Query: 256 -ASGQT----------------YERVFIQKWLDHGLNICPKTR----QTLAHTNLIPNYT 294
SG+T ++F WL+ P+T Q L + + PN+T
Sbjct: 159 LGSGKTWVALDVCLSYKVQCKMDFKIF---WLNLKNCNSPETVLEMLQKLLY-QIDPNWT 214
Query: 295 VKA-------MIENWCEENNLRLPSYSVHSN--IVSVLSPLDHV-----------SAQDL 334
++ + + + RL + N +V L +V S + L
Sbjct: 215 SRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV-----LLNVQNAKAWNAFNLSCKIL 269
Query: 335 IRT-DS--FRSLRGSNSTSRSSVDVGNGFQKLK-IDVSSRLTEKSNHRSPEQS------- 383
+ T L + +T S + + + + P +
Sbjct: 270 LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRR 329
Query: 384 -----------------YIHSRSESASSAI-SSVEYMLPAS-KELSRRCS---KNEKSSE 421
+ H + ++ I SS+ + PA +++ R S +
Sbjct: 330 LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPT 389
Query: 422 --LS---GEIISECPAASPSRSDEVTTTPYVKKLIE-DLNSTSNEIQASAAAELRLLAKH 475
LS ++I V + L+E ++ I + + L K
Sbjct: 390 ILLSLIWFDVIKSDV-------MVVVNKLHKYSLVEKQPKESTISIPS-----IYLELKV 437
Query: 476 NMEN-----RMII----------GNCGAIPPLLSLLYS-------EAQLTQEHAV--TAL 511
+EN R I+ + P L YS + + +
Sbjct: 438 KLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVF 497
Query: 512 LNLS-INDENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRSGA 570
L+ + E K + H A S + L +L L+ YK I +
Sbjct: 498 LDFRFL--EQK-----------IRHD-----STAWNASGSILNTLQQLKFYKPYICDNDP 539
Query: 571 -----VKALVDLL---GSGTLRGRKDAATALFNLSIFHENKARIIQA 609
V A++D L + + T L +++ E++A +A
Sbjct: 540 KYERLVNAILDFLPKIEENLICSKY---TDLLRIALMAEDEAIFEEA 583
|
| >3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778 | Back alignment and structure |
|---|
Score = 81.8 bits (201), Expect = 4e-16
Identities = 35/261 (13%), Positives = 85/261 (32%), Gaps = 35/261 (13%)
Query: 475 HNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAMIAEAGAIEPLI 534
+ N I I L +++ + ++ V + N++ + +A+ GA++ ++
Sbjct: 445 ILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIIL 504
Query: 535 HVLKSGNGGAKENSAAALFSLSVL------EEYKAKIGRSGAVKALVDLLGSG------- 581
L + + +L+ + K A+ L +LL
Sbjct: 505 EYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNP 564
Query: 582 -------TLRGRKDAATALFNLSIFHEN------KARIIQAGAVKHLVDLMDPSTGMVDK 628
L +A AL NL+ + K + + +LM + +
Sbjct: 565 LHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQR 624
Query: 629 A-VALLANLSTVGEGRLAIAREGGIPS-------LVEVVESGSQRGKENAASILLQLCLH 680
+ + L++N+ + A P LV++++ + A+I +
Sbjct: 625 STLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATT 684
Query: 681 SPKFCTLVLQ-EGAVPPLVGL 700
P +L + + + +
Sbjct: 685 IPLIAKELLTKKELIENAIQV 705
|
| >3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778 | Back alignment and structure |
|---|
Score = 58.7 bits (141), Expect = 5e-09
Identities = 34/228 (14%), Positives = 75/228 (32%), Gaps = 41/228 (17%)
Query: 513 NLSINDENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVK 572
I N+ I I L + + + K+ +++++ + + ++ + GAVK
Sbjct: 442 KEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVK 501
Query: 573 ALVDLLGSGTLRG---RKDAATALFNLSI-------FHENKARIIQAGAVKHLVDLMDPS 622
+++ L + G R AL + I F + A+ L +L+ S
Sbjct: 502 IILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYS----ALNAIPFLFELLPRS 557
Query: 623 TG-------------MVDKAVALLA--NLSTVGEG------RLAIAREGGIPSLVEVVES 661
T + D ALLA NL++ + ++ + ++ ++
Sbjct: 558 TPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLD 617
Query: 662 GSQRGKENAASILLQLCLHSPKFCTLVLQEG------AVPPLVGLSQS 703
+ + + ++ + H LV L Q
Sbjct: 618 ENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQL 665
|
| >3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778 | Back alignment and structure |
|---|
Score = 50.9 bits (121), Expect = 1e-06
Identities = 40/275 (14%), Positives = 78/275 (28%), Gaps = 46/275 (16%)
Query: 482 IIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAMIAEAGAIEPLIHVLKSGN 541
I G ++ E L + LL+ + DE ++ L L +
Sbjct: 250 IFLTKGLSKLFKKRVFEEQDLQFTKELLRLLSSACIDETMRTYITENYLQLLERSLNVED 309
Query: 542 GGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFHE 601
+ SA L + I + ++ + + + + AL LS+
Sbjct: 310 --VQIYSALVLVKTWSFTK-LTCINLKQLSEIFINAISRRIVPKVEMSVEALAYLSLKAS 366
Query: 602 NKARIIQ-AGAVKHLVDLMD--PSTGMVDKAVALLANLST-------------------- 638
K I + L+ ++ T + + ++ANLST
Sbjct: 367 VKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXX 426
Query: 639 -------------------VGEGRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCL 679
+ I R I L + + S K+ I+ +
Sbjct: 427 XXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNIT- 485
Query: 680 HSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQ 714
S F + Q+GAV ++ + +
Sbjct: 486 RSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRIL 520
|
| >3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778 | Back alignment and structure |
|---|
Score = 44.4 bits (104), Expect = 1e-04
Identities = 35/247 (14%), Positives = 77/247 (31%), Gaps = 7/247 (2%)
Query: 391 SASSAISSVEYMLPASKELSRRCSKNEKSSELSGEIISECPAASPSRSDEVTTTPYVKKL 450
SA + Y+ +L R E S ++ S ++ + +
Sbjct: 282 SACIDETMRTYITENYLQLLERSLNVEDVQIYSALVL--VKTWSFTKLTCINLKQLSEIF 339
Query: 451 IEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAV-T 509
I ++ + L L+ MI N LL+++ S+ + +
Sbjct: 340 INAISRRIVPKVEMSVEALAYLSLKASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLV 399
Query: 510 ALLNLSINDENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRSG 569
+ NLS E A + A +L + I R+
Sbjct: 400 IMANLSTLPEEXXXXXXXXXXXXXXXXXXXPA--ADKVGAEKAAKEDILLFNEKYILRTE 457
Query: 570 AVKALVDLLGSGTLRGRKDAATALFNLSIFHENKARIIQAGAVKHLVDLM--DPSTGMVD 627
+ L + + + ++ ++N++ ++ Q GAVK +++ + G
Sbjct: 458 LISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPI 517
Query: 628 KAVALLA 634
+ + A
Sbjct: 518 RILGCRA 524
|
| >2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 94 | Back alignment and structure |
|---|
Score = 71.1 bits (174), Expect = 2e-15
Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 9/77 (11%)
Query: 240 FRCPLSLELMIDPVIVAS-GQTYERVFIQKWLD-----HGLNICPKT---RQTLAHTNLI 290
F CP++ E M PV G TYE I + ++ CP+ + ++LI
Sbjct: 8 FTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLI 67
Query: 291 PNYTVKAMIENWCEENN 307
+ ++ IEN ++ +
Sbjct: 68 QDEALRRAIENHNKKRH 84
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 | Back alignment and structure |
|---|
Score = 69.7 bits (171), Expect = 1e-13
Identities = 58/247 (23%), Positives = 93/247 (37%), Gaps = 56/247 (22%)
Query: 432 AASPSRSDEVTTTPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPP 491
AA+P R+D V+ I++L S ++ +AA L IG+ A+ P
Sbjct: 10 AAAPLRADPEK----VEMYIKNLQDDSYYVRRAAAYALGK-----------IGDERAVEP 54
Query: 492 LLSLLYSEAQLTQEHAVTALLNLSINDENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAA 551
L+ L E + A AL I + A+EPLI LK +G ++++A A
Sbjct: 55 LIKALKDEDAWVRRAAADAL----------GQIGDERAVEPLIKALKDEDGWVRQSAAVA 104
Query: 552 LFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFHENKARIIQAGA 611
L +IG AV+ L+ L R AA AL I A
Sbjct: 105 L----------GQIGDERAVEPLIKALKDEDWFVRIAAAFAL----------GEIGDERA 144
Query: 612 VKHLVDLM-DPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVESGSQRGKENA 670
V+ L+ + D + A L I E ++ ++ E+G+ ++ A
Sbjct: 145 VEPLIKALKDEDGWVRQSAADALGE----------IGGERVRAAMEKLAETGTGFARKVA 194
Query: 671 ASILLQL 677
+ L
Sbjct: 195 VNYLETH 201
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 2e-07
Identities = 41/214 (19%), Positives = 69/214 (32%), Gaps = 58/214 (27%)
Query: 522 AMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSG 581
+ A+ +E I L+ + + +A AL KIG AV+ L+ L
Sbjct: 13 PLRADPEKVEMYIKNLQDDSYYVRRAAAYAL----------GKIGDERAVEPLIKALKDE 62
Query: 582 TLRGRKDAATALFNLSIFHENKARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVG 640
R+ AA AL +I AV+ L+ + D + A L
Sbjct: 63 DAWVRRAAADAL----------GQIGDERAVEPLIKALKDEDGWVRQSAAVALGQ----- 107
Query: 641 EGRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLV-- 698
I E + L++ ++ + AA L ++ E AV PL+
Sbjct: 108 -----IGDERAVEPLIKALKDEDWFVRIAAAFALGEIG-----------DERAVEPLIKA 151
Query: 699 --------------GLSQSGTPRAKEKAQQLLSH 718
L + G R + ++L
Sbjct: 152 LKDEDGWVRQSAADALGEIGGERVRAAMEKLAET 185
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 | Back alignment and structure |
|---|
Score = 67.0 bits (164), Expect = 8e-13
Identities = 53/229 (23%), Positives = 86/229 (37%), Gaps = 52/229 (22%)
Query: 447 VKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEH 506
V+ I++L S ++ +AA L IG+ A+ PL+ L E +
Sbjct: 16 VEMYIKNLQDDSYYVRRAAAYALGK-----------IGDERAVEPLIKALKDEDAWVRRA 64
Query: 507 AVTALLNLSINDENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIG 566
A AL I + A+EPLI LK +G ++++A AL +IG
Sbjct: 65 AADAL----------GQIGDERAVEPLIKALKDEDGWVRQSAAVAL----------GQIG 104
Query: 567 RSGAVKALVDLLGSGTLRGRKDAATALFNLSIFHENKARIIQAGAVKHLVDLM-DPSTGM 625
AV+ L+ L R AA AL I AV+ L+ + D +
Sbjct: 105 DERAVEPLIKALKDEDWFVRIAAAFAL----------GEIGDERAVEPLIKALKDEDGWV 154
Query: 626 VDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVESGSQRGKENAASIL 674
A L I E ++ ++ E+G+ ++ A + L
Sbjct: 155 RQSAADALGE----------IGGERVRAAMEKLAETGTGFARKVAVNYL 193
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 | Back alignment and structure |
|---|
Score = 61.2 bits (149), Expect = 7e-11
Identities = 47/237 (19%), Positives = 83/237 (35%), Gaps = 52/237 (21%)
Query: 488 AIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAMIAEAGAIEPLIHVLKSGNGGAKEN 547
+ + L ++ + A AL I + A+EPLI LK + +
Sbjct: 15 KVEMYIKNLQDDSYYVRRAAAYAL----------GKIGDERAVEPLIKALKDEDAWVRRA 64
Query: 548 SAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFHENKARII 607
+A AL +IG AV+ L+ L R+ AA AL +I
Sbjct: 65 AADAL----------GQIGDERAVEPLIKALKDEDGWVRQSAAVAL----------GQIG 104
Query: 608 QAGAVKHLVD-LMDPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVESGSQRG 666
AV+ L+ L D + A L I E + L++ ++
Sbjct: 105 DERAVEPLIKALKDEDWFVRIAAAFALGE----------IGDERAVEPLIKALKDEDGWV 154
Query: 667 KENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFRNQR 723
+++AA L ++ E + L+++GT A++ A L ++
Sbjct: 155 RQSAADALGEIG-----------GERVRAAMEKLAETGTGFARKVAVNYLETHKSLI 200
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 1e-06
Identities = 40/212 (18%), Positives = 67/212 (31%), Gaps = 58/212 (27%)
Query: 524 IAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTL 583
+ +E I L+ + + +A AL KIG AV+ L+ L
Sbjct: 10 HTDPEKVEMYIKNLQDDSYYVRRAAAYAL----------GKIGDERAVEPLIKALKDEDA 59
Query: 584 RGRKDAATALFNLSIFHENKARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGEG 642
R+ AA AL +I AV+ L+ + D + A L
Sbjct: 60 WVRRAAADAL----------GQIGDERAVEPLIKALKDEDGWVRQSAAVALGQ------- 102
Query: 643 RLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLV---- 698
I E + L++ ++ + AA L ++ E AV PL+
Sbjct: 103 ---IGDERAVEPLIKALKDEDWFVRIAAAFALGEIG-----------DERAVEPLIKALK 148
Query: 699 ------------GLSQSGTPRAKEKAQQLLSH 718
L + G R + ++L
Sbjct: 149 DEDGWVRQSAADALGEIGGERVRAAMEKLAET 180
|
| >2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A Length = 61 | Back alignment and structure |
|---|
Score = 57.7 bits (140), Expect = 4e-11
Identities = 11/58 (18%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Query: 239 YFRCPLSLELMIDPVI-VASGQTYERVFIQKWL-DHGLNICPKTRQTLAHTNLIPNYT 294
+ C +S ++ PV+ S +E+ +++++ D G P T + L+ ++
Sbjct: 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTG--NDPITNEPLSIEEIVEIVP 58
|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131 | Back alignment and structure |
|---|
Score = 57.7 bits (140), Expect = 3e-10
Identities = 28/149 (18%), Positives = 48/149 (32%), Gaps = 36/149 (24%)
Query: 447 VKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCG--AIPPLLSLLYSEAQLTQ 504
+ + + ++ + L G A PLL L +E +
Sbjct: 14 LVPRGSHMADENKWVRRDVSTAL--------------SRMGDEAFEPLLESLSNEDWRIR 59
Query: 505 EHAVTALLNLSINDENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAK 564
A + + A+EPLI +L+ +G + +A +L +
Sbjct: 60 GAAAWII----------GNFQDERAVEPLIKLLEDDSGFVRSGAARSL----------EQ 99
Query: 565 IGRSGAVKALVDLLGSGTLRGRKDAATAL 593
IG A+ L +GT RK A L
Sbjct: 100 IGGERVRAAMEKLAETGTGFARKVAVNYL 128
|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131 | Back alignment and structure |
|---|
Score = 50.8 bits (122), Expect = 7e-08
Identities = 28/144 (19%), Positives = 46/144 (31%), Gaps = 31/144 (21%)
Query: 488 AIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAMIAEAGAIEPLIHVLKSGNGGAKEN 547
+ P S + E + + TAL + DE A EPL+ L + + +
Sbjct: 13 GLVPRGSHMADENKWVRRDVSTALSR--MGDE---------AFEPLLESLSNEDWRIRGA 61
Query: 548 SAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFHENKARII 607
+A + AV+ L+ LL + R AA +L +I
Sbjct: 62 AAWII----------GNFQDERAVEPLIKLLEDDSGFVRSGAARSL----------EQIG 101
Query: 608 QAGAVKHLVDLMDPSTGMVDKAVA 631
+ L + TG K
Sbjct: 102 GERVRAAMEKLAETGTGFARKVAV 125
|
| >3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae} Length = 267 | Back alignment and structure |
|---|
Score = 54.6 bits (130), Expect = 3e-08
Identities = 31/240 (12%), Positives = 84/240 (35%), Gaps = 19/240 (7%)
Query: 85 PKMSKIFSVLHSEPLMMKIQSSSLEICHILYRLLQSSPSNSSMSAVQHCMQEIH-----C 139
PK K F LH+ L Q +I + +L+ S+ ++ ++ + +I
Sbjct: 16 PKSGKYFHNLHARDLSNIYQQCYKQIDETINQLVDSTSPSTIG--IEEQVADITSTYKLL 73
Query: 140 LKQERIMEHITKAMRGLQDDTIRCTDHLVKI-IESLGLTSNQELLKESLAVEMERIRAER 198
E + ++ L+ + + +D +I + + EL L+ +
Sbjct: 74 STYESESNSFDEHIKDLKKNFKQSSDACPQIDLSTWDKYRTGELTAPKLSELYLNMPTPE 133
Query: 199 NQNKGHSDQ----MNYIVDLISHIRDCMLKIERFEATSGVPIPPY---FRCPLSLELMID 251
++ + + + + + ++ + I CP++ +
Sbjct: 134 PATMVNNTDTLKILKVLPYIWNDPTCVIPDLQNPADEDDLQIEGGKIELTCPITCKPYEA 193
Query: 252 PVIVAS-GQTYERVFIQKWLD-HGLNICPKT--RQTLAHTNLIPNYTVKAMIENWCEENN 307
P+I ++R IQ +L + CP+ Q ++ + + + ++ + + +
Sbjct: 194 PLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPIMELRCKIAKMKES 253
|
| >3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens} Length = 92 | Back alignment and structure |
|---|
Score = 50.1 bits (120), Expect = 5e-08
Identities = 19/80 (23%), Positives = 32/80 (40%), Gaps = 3/80 (3%)
Query: 230 ATSGVPIPPYFRCPLSLELMIDPVIVAS-GQTYERVFIQKWLD-HGLNICPKTRQTLAHT 287
+ PIP C + ++M D V++ G +Y I+ L + CP Q
Sbjct: 4 GSEDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSP 63
Query: 288 -NLIPNYTVKAMIENWCEEN 306
LI N ++ + N+ E
Sbjct: 64 DALIANKFLRQAVNNFKNET 83
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 | Back alignment and structure |
|---|
Score = 52.5 bits (126), Expect = 2e-07
Identities = 33/293 (11%), Positives = 78/293 (26%), Gaps = 65/293 (22%)
Query: 447 VKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEH 506
+L L+ ++ + S+A L+L G A+ + + + ++
Sbjct: 25 DDELFRLLDDHNSLKRISSARVLQL-----------RGGQDAVRLAIEFCSDKNYIRRDI 73
Query: 507 AVTALLNLSINDENKAMIAEAGAIEPLIHV-LKSGNGGAKENSAAALFSLSVLEEYKAKI 565
L + I + E L ++ L + + + + K I
Sbjct: 74 GAFILGQIKICKK-----CEDNVFNILNNMALNDKSACVRATAIESTAQR----CKKNPI 124
Query: 566 GRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFHENKARIIQAGAVKHLVDLM-DPSTG 624
V+ + R+ A A+ + I + L++L+ DP+
Sbjct: 125 YSPKIVEQSQITAFDKSTNVRRATAFAI----------SVINDKATIPLLINLLKDPNGD 174
Query: 625 MVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCLHSPKF 684
+ + A + VE+++ ++ + A L
Sbjct: 175 VRNWAAFAI--------NINKYDNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRK------ 220
Query: 685 CTLVLQEGAVPPLVG--------------LSQSGTPRAKEKAQQLLSHFRNQR 723
+ + L + G +L F +
Sbjct: 221 -----DKRVLSVLCDELKKNTVYDDIIEAAGELGDKTLLPVLDTMLYKFDDNE 268
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 | Back alignment and structure |
|---|
Score = 48.6 bits (116), Expect = 3e-06
Identities = 22/189 (11%), Positives = 52/189 (27%), Gaps = 43/189 (22%)
Query: 447 VKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEH 506
V++ S ++ + A ++ I + IP L++LL +
Sbjct: 130 VEQSQITAFDKSTNVRRATA---FAISV--------INDKATIPLLINLLKDPNGDVRNW 178
Query: 507 AVTALLNLSINDENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIG 566
A A+ ++ + + +L+ N + + L +
Sbjct: 179 AAFAININKYDNS--------DIRDCFVEMLQDKNEEVRIEAIIGL----------SYRK 220
Query: 567 RSGAVKALVDLLGSGTLRGRKDAATALFNLSIFHENKARIIQAGAVKHLVDLM--DPSTG 624
+ L D L T+ A + + L ++
Sbjct: 221 DKRVLSVLCDELKKNTVYDD--IIEAA----------GELGDKTLLPVLDTMLYKFDDNE 268
Query: 625 MVDKAVALL 633
++ A+ L
Sbjct: 269 IITSAIDKL 277
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 | Back alignment and structure |
|---|
Score = 46.3 bits (110), Expect = 1e-05
Identities = 31/222 (13%), Positives = 64/222 (28%), Gaps = 43/222 (19%)
Query: 526 EAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRG 585
+ + L +L N + +SA L G AV+ ++
Sbjct: 21 KKLNDDELFRLLDDHNSLKRISSARVL----------QLRGGQDAVRLAIEFCSDKNYIR 70
Query: 586 RKDAATALFNLSIFHENKARI---------------IQAGAVKHLVDLMDPSTGMVDKAV 630
R A L + I + + + ++A A++ + K V
Sbjct: 71 RDIGAFILGQIKICKKCEDNVFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSPKIV 130
Query: 631 ALLANL--STVGEGRLAIAR-------EGGIPSLVEVVESGSQRGKENAASILLQLCLHS 681
R A A + IP L+ +++ + + AA + +
Sbjct: 131 EQSQITAFDKSTNVRRATAFAISVINDKATIPLLINLLKDPNGDVRNWAAFAININKYDN 190
Query: 682 PKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFRNQR 723
V + Q + +A LS+ +++R
Sbjct: 191 SD---------IRDCFVEMLQDKNEEVRIEAIIGLSYRKDKR 223
|
| >3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} Length = 124 | Back alignment and structure |
|---|
Score = 45.3 bits (107), Expect = 5e-06
Identities = 10/62 (16%), Positives = 23/62 (37%), Gaps = 1/62 (1%)
Query: 240 FRCPLSLELMIDPVIVASGQTYERVFIQKWLDHGLNICPKTRQTLAHT-NLIPNYTVKAM 298
F+C EL+ P+ + + + + CP R L + + N ++ +
Sbjct: 53 FQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQPLQTV 112
Query: 299 IE 300
+
Sbjct: 113 LN 114
|
| >3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} Length = 100 | Back alignment and structure |
|---|
Score = 44.1 bits (104), Expect = 8e-06
Identities = 14/67 (20%), Positives = 25/67 (37%), Gaps = 1/67 (1%)
Query: 236 IPPYFRCPLSLELMIDPVIVAS-GQTYERVFIQKWLDHGLNICPKTRQTLAHTNLIPNYT 294
I FRC + +E + D + + I++WL CP R L L+
Sbjct: 19 IAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRW 78
Query: 295 VKAMIEN 301
+ + +
Sbjct: 79 AEEVTQQ 85
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 | Back alignment and structure |
|---|
Score = 46.6 bits (110), Expect = 9e-06
Identities = 41/240 (17%), Positives = 84/240 (35%), Gaps = 24/240 (10%)
Query: 446 YVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLY-SEAQLTQ 504
+KKLIE L+ + +A + + ++AK + + L SLL SEA
Sbjct: 33 VLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYE-----PMLKKLFSLLKKSEAIPLT 87
Query: 505 EHAVTALLNLSINDENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAK 564
+ A ++ I L + G+ K N + AL ++
Sbjct: 88 QEIAKAFGQMAKEKPELV----KSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMA 143
Query: 565 IGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFHENKARIIQAGAVKHLVDLMDPSTG 624
V+ + +L S + A + + EN + + + +++L+
Sbjct: 144 S----IVRDFMSMLSSKNREDKLTALNFIEAMG---ENSFKYVNP-FLPRIINLLHDGDE 195
Query: 625 MV-DKAVALLANLSTVGEGRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCLHSPK 683
+V AV L +L+T+ + + + +E + S + + +L L
Sbjct: 196 IVRASAVEALVHLATLNDKLRKV-----VIKRLEELNDTSSLVNKTVKEGISRLLLLEGH 250
|
| >2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 44.0 bits (104), Expect = 1e-05
Identities = 14/69 (20%), Positives = 28/69 (40%), Gaps = 2/69 (2%)
Query: 235 PIPPYFRCPLSLELMIDPVIVAS-GQTYERVFIQKWLDHGLNICPKTRQTLAHTNLIPNY 293
I RC + E +I+ Y + I+K+L + CP T+ +L N
Sbjct: 18 TIDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYK-TQCPTCCVTVTEPDLKNNR 76
Query: 294 TVKAMIENW 302
+ ++++
Sbjct: 77 ILDELVKSL 85
|
| >1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens} Length = 150 | Back alignment and structure |
|---|
Score = 44.2 bits (104), Expect = 2e-05
Identities = 14/62 (22%), Positives = 25/62 (40%), Gaps = 1/62 (1%)
Query: 240 FRCPLSLELMIDPVIVASGQTYERVFIQKWLDHGLNICPKTRQTLAHT-NLIPNYTVKAM 298
F C EL+ PV + +Q+ + CP R L +IPN ++ +
Sbjct: 79 FMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQTL 138
Query: 299 IE 300
++
Sbjct: 139 LD 140
|
| >2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B Length = 165 | Back alignment and structure |
|---|
Score = 44.6 bits (105), Expect = 2e-05
Identities = 14/67 (20%), Positives = 26/67 (38%), Gaps = 2/67 (2%)
Query: 236 IPPYFRCPLSLELMIDPV-IVASGQTYERVFIQKWLDHGLNICPKTRQTLAHT-NLIPNY 293
+ CP+ L+++ + + + I L G CP R+ L +L P+
Sbjct: 51 LHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDP 110
Query: 294 TVKAMIE 300
A+I
Sbjct: 111 NFDALIS 117
|
| >2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens} Length = 74 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 2e-05
Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 2/58 (3%)
Query: 229 EATSGVPIPPYFRCPLSLELMIDPVIVAS-GQTYERVFIQKWLD-HGLNICPKTRQTL 284
+ PIP C + ++M D V++ G +Y I+ L + CP Q
Sbjct: 5 SSGEDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQND 62
|
| >3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A Length = 118 | Back alignment and structure |
|---|
Score = 43.3 bits (102), Expect = 3e-05
Identities = 18/89 (20%), Positives = 31/89 (34%), Gaps = 7/89 (7%)
Query: 235 PIPPYFRCPLSLELMIDPVIVASGQTYERVFIQKWLDHGLNICPKTRQTLAHTNLIPNYT 294
P+ + CP+ L + + V G + + I K + + CP + L L P+
Sbjct: 14 PLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNF 73
Query: 295 VKAMIEN---WCEENN----LRLPSYSVH 316
K I + C + L H
Sbjct: 74 AKREILSLMVKCPNEGCLHKMELRHLEDH 102
|
| >2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 72 | Back alignment and structure |
|---|
Score = 39.0 bits (91), Expect = 2e-04
Identities = 12/56 (21%), Positives = 21/56 (37%), Gaps = 2/56 (3%)
Query: 238 PYFRCPLSLELMIDPVIVAS-GQTYERVFIQKWLDHGLNICPKTRQTLAHTNLIPN 292
PY C + +ID + T+ + I + + N CPK + T +
Sbjct: 14 PYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYS-NRCPKCNIVVHQTQPLSG 68
|
| >1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 112 | Back alignment and structure |
|---|
Score = 39.7 bits (93), Expect = 3e-04
Identities = 14/64 (21%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
Query: 240 FRCPLSLELMIDPVIVASGQTYERVFIQKWLDH--GLNICPKTRQTLAHTNLIPNYTVKA 297
CP+ LEL+ +PV + + + K L+ G + CP + + +L +
Sbjct: 22 LECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQ 81
Query: 298 MIEN 301
++E
Sbjct: 82 LVEE 85
|
| >3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} Length = 170 | Back alignment and structure |
|---|
Score = 40.8 bits (95), Expect = 4e-04
Identities = 15/67 (22%), Positives = 27/67 (40%)
Query: 235 PIPPYFRCPLSLELMIDPVIVASGQTYERVFIQKWLDHGLNICPKTRQTLAHTNLIPNYT 294
P+ + CP+ L + + V G + + I K + + CP + L L P+
Sbjct: 14 PLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNF 73
Query: 295 VKAMIEN 301
K I +
Sbjct: 74 AKREILS 80
|
| >2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71 | Back alignment and structure |
|---|
Score = 37.9 bits (88), Expect = 6e-04
Identities = 10/64 (15%), Positives = 21/64 (32%), Gaps = 1/64 (1%)
Query: 230 ATSGVPIPPYFRCPLSLELMIDPVIVASGQTYERVFIQKWLDHGLNICPKTRQTLAHTNL 289
+ + P C + L+ + PV + + + ++ G C RQ + L
Sbjct: 6 SGNTAPSLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWLGKR-CALCRQEIPEDFL 64
Query: 290 IPNY 293
Sbjct: 65 DSGP 68
|
| >2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A Length = 108 | Back alignment and structure |
|---|
Score = 38.6 bits (90), Expect = 7e-04
Identities = 12/70 (17%), Positives = 28/70 (40%), Gaps = 6/70 (8%)
Query: 236 IPPYFRCPLSLELMIDPVIVAS-GQTYERVFIQKWLDHGLNICPKTRQTLAHT----NLI 290
+ P+ C L ID + ++ + I ++L+ CP + T N+
Sbjct: 12 LNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETS-KYCPICDVQVHKTRPLLNIR 70
Query: 291 PNYTVKAMIE 300
+ T++ ++
Sbjct: 71 SDKTLQDIVY 80
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 732 | |||
| 3nmw_A | 354 | APC variant protein; ARMADIILO repeats domain, cel | 99.97 | |
| 3nmz_A | 458 | APC variant protein; protein-protein complex, arma | 99.96 | |
| 1xm9_A | 457 | Plakophilin 1; armadillo repeat, cell adhesion; 2. | 99.96 | |
| 3l6x_A | 584 | Catenin delta-1; catenin, armadillo, ARM, JMD, CE | 99.96 | |
| 1xm9_A | 457 | Plakophilin 1; armadillo repeat, cell adhesion; 2. | 99.95 | |
| 3now_A | 810 | UNC-45 protein, SD10334P; armadillo repeat, HSP90, | 99.95 | |
| 3nmz_A | 458 | APC variant protein; protein-protein complex, arma | 99.95 | |
| 3l6x_A | 584 | Catenin delta-1; catenin, armadillo, ARM, JMD, CE | 99.95 | |
| 3ul1_B | 510 | Importin subunit alpha-2; arm repeat, armadillo re | 99.94 | |
| 3tpo_A | 529 | Importin subunit alpha-2; nuclear import, protein | 99.94 | |
| 3nmw_A | 354 | APC variant protein; ARMADIILO repeats domain, cel | 99.94 | |
| 3now_A | 810 | UNC-45 protein, SD10334P; armadillo repeat, HSP90, | 99.94 | |
| 4b8j_A | 528 | Importin subunit alpha-1A; transport protein, nucl | 99.93 | |
| 4hxt_A | 252 | De novo protein OR329; structural genomics, PSI-bi | 99.93 | |
| 4hxt_A | 252 | De novo protein OR329; structural genomics, PSI-bi | 99.93 | |
| 3tpo_A | 529 | Importin subunit alpha-2; nuclear import, protein | 99.93 | |
| 3ul1_B | 510 | Importin subunit alpha-2; arm repeat, armadillo re | 99.92 | |
| 4b8j_A | 528 | Importin subunit alpha-1A; transport protein, nucl | 99.92 | |
| 4db8_A | 252 | Armadillo-repeat protein; solenoid repeat, de novo | 99.92 | |
| 1wa5_B | 530 | Importin alpha subunit; nuclear transport/complex, | 99.92 | |
| 4db8_A | 252 | Armadillo-repeat protein; solenoid repeat, de novo | 99.91 | |
| 1wa5_B | 530 | Importin alpha subunit; nuclear transport/complex, | 99.91 | |
| 2jdq_A | 450 | Importin alpha-1 subunit; transport, PB2 subunit, | 99.91 | |
| 2jdq_A | 450 | Importin alpha-1 subunit; transport, PB2 subunit, | 99.91 | |
| 1jdh_A | 529 | Beta-catenin; beta-catenin, protein-protein comple | 99.89 | |
| 2z6h_A | 644 | Catenin beta-1, beta-catenin; C-terminal domain, a | 99.89 | |
| 1jdh_A | 529 | Beta-catenin; beta-catenin, protein-protein comple | 99.88 | |
| 3tt9_A | 233 | Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | 99.88 | |
| 3opb_A | 778 | SWI5-dependent HO expression protein 4; heat and a | 99.87 | |
| 2z6h_A | 644 | Catenin beta-1, beta-catenin; C-terminal domain, a | 99.87 | |
| 3tt9_A | 233 | Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | 99.87 | |
| 2f42_A | 179 | STIP1 homology and U-box containing protein 1; cha | 99.86 | |
| 2z6g_A | 780 | B-catenin; FULL-length, beta-catenin, cell adhesio | 99.85 | |
| 4db6_A | 210 | Armadillo repeat protein; solenoid repeat, armadil | 99.85 | |
| 2z6g_A | 780 | B-catenin; FULL-length, beta-catenin, cell adhesio | 99.85 | |
| 4db6_A | 210 | Armadillo repeat protein; solenoid repeat, armadil | 99.85 | |
| 2kr4_A | 85 | Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri | 99.85 | |
| 2kre_A | 100 | Ubiquitin conjugation factor E4 B; U-box domain, E | 99.85 | |
| 1wgm_A | 98 | Ubiquitin conjugation factor E4A; ubiquitinating e | 99.84 | |
| 3m62_A | 968 | Ubiquitin conjugation factor E4; armadillo-like re | 99.8 | |
| 3opb_A | 778 | SWI5-dependent HO expression protein 4; heat and a | 99.78 | |
| 1t1h_A | 78 | Gspef-atpub14, armadillo repeat containing protein | 99.78 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 99.77 | |
| 1xqr_A | 296 | HSPBP1 protein; armadillo repeat, superhelical twi | 99.76 | |
| 1xqr_A | 296 | HSPBP1 protein; armadillo repeat, superhelical twi | 99.76 | |
| 2yu4_A | 94 | E3 SUMO-protein ligase NSE2; SP-ring domain, struc | 99.75 | |
| 2bay_A | 61 | PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l | 99.64 | |
| 3ztg_A | 92 | E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR | 99.58 | |
| 3htk_C | 267 | E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL- | 99.56 | |
| 3fl2_A | 124 | E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA | 99.46 | |
| 3grl_A | 651 | General vesicular transport factor P115; vesicle t | 99.43 | |
| 1z6u_A | 150 | NP95-like ring finger protein isoform B; structura | 99.42 | |
| 2y43_A | 99 | E3 ubiquitin-protein ligase RAD18; DNA repair, met | 99.36 | |
| 3grl_A | 651 | General vesicular transport factor P115; vesicle t | 99.36 | |
| 2ckl_A | 108 | Polycomb group ring finger protein 4; BMI1, RING1B | 99.31 | |
| 2egp_A | 79 | Tripartite motif-containing protein 34; ZF-C3HC4 d | 99.29 | |
| 3lrq_A | 100 | E3 ubiquitin-protein ligase TRIM37; structural gen | 99.29 | |
| 3hct_A | 118 | TNF receptor-associated factor 6; cross-brace, bet | 99.28 | |
| 2ecw_A | 85 | Tripartite motif-containing protein 30; metal bind | 99.27 | |
| 4ayc_A | 138 | E3 ubiquitin-protein ligase RNF8; DNA damage, K63 | 99.27 | |
| 1jm7_B | 117 | BARD1, BRCA1-associated ring domain protein 1; rin | 99.26 | |
| 3l11_A | 115 | E3 ubiquitin-protein ligase RNF168; E3 ligase, rin | 99.26 | |
| 2ckl_B | 165 | Ubiquitin ligase protein RING2; BMI1, RING1B, poly | 99.26 | |
| 2ecv_A | 85 | Tripartite motif-containing protein 5; metal bindi | 99.25 | |
| 2ecy_A | 66 | TNF receptor-associated factor 3; metal binding pr | 99.25 | |
| 2csy_A | 81 | Zinc finger protein 183-like 1; ring finger protei | 99.25 | |
| 2yur_A | 74 | Retinoblastoma-binding protein 6; P53-associated c | 99.24 | |
| 1jm7_A | 112 | BRCA1, breast cancer type 1 susceptibility protein | 99.2 | |
| 2djb_A | 72 | Polycomb group ring finger protein 6; PCGF6, ring | 99.19 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 99.15 | |
| 2ysl_A | 73 | Tripartite motif-containing protein 31; ring-type | 99.14 | |
| 3hcs_A | 170 | TNF receptor-associated factor 6; cross-brace, bet | 99.13 | |
| 1g25_A | 65 | CDK-activating kinase assembly factor MAT1; ring f | 99.13 | |
| 1oyz_A | 280 | Hypothetical protein YIBA; structural genomics, PS | 99.13 | |
| 1rmd_A | 116 | RAG1; V(D)J recombination, antibody, MAD, ring fin | 99.12 | |
| 3knv_A | 141 | TNF receptor-associated factor 2; cross-brace, alt | 99.11 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 99.1 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 99.07 | |
| 2ysj_A | 63 | Tripartite motif-containing protein 31; ring-type | 99.07 | |
| 3ng2_A | 71 | RNF4, snurf, ring finger protein 4; ring domain, E | 99.06 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 99.04 | |
| 2ecj_A | 58 | Tripartite motif-containing protein 39; TRIM39, ri | 98.96 | |
| 4fdd_A | 852 | Transportin-1; heat repeats, karyopherin, nuclear | 98.96 | |
| 2ct2_A | 88 | Tripartite motif protein 32; zinc-finger protein H | 98.96 | |
| 2d8t_A | 71 | Dactylidin, ring finger protein 146; RNF146, ring | 98.96 | |
| 1oyz_A | 280 | Hypothetical protein YIBA; structural genomics, PS | 98.95 | |
| 2xeu_A | 64 | Ring finger protein 4; transcription, zinc-finger, | 98.93 | |
| 1e4u_A | 78 | Transcriptional repressor NOT4; gene regulation, t | 98.89 | |
| 2ea6_A | 69 | Ring finger protein 4; RNF4, RES4-26, ring domain, | 98.87 | |
| 2ect_A | 78 | Ring finger protein 126; metal binding protein, st | 98.85 | |
| 4fdd_A | 852 | Transportin-1; heat repeats, karyopherin, nuclear | 98.77 | |
| 1chc_A | 68 | Equine herpes virus-1 ring domain; viral protein; | 98.72 | |
| 1b3u_A | 588 | Protein (protein phosphatase PP2A); scaffold prote | 98.71 | |
| 4ap4_A | 133 | E3 ubiquitin ligase RNF4; ligase-signalling protei | 98.71 | |
| 4gmo_A | 684 | Putative uncharacterized protein; ARM, heat, solen | 98.7 | |
| 2ecm_A | 55 | Ring finger and CHY zinc finger domain- containing | 98.7 | |
| 1b3u_A | 588 | Protein (protein phosphatase PP2A); scaffold prote | 98.69 | |
| 2ecn_A | 70 | Ring finger protein 141; RNF141, ring domain, zinc | 98.68 | |
| 1bor_A | 56 | Transcription factor PML; proto-oncogene, nuclear | 98.68 | |
| 4gmo_A | 684 | Putative uncharacterized protein; ARM, heat, solen | 98.65 | |
| 1ibr_B | 462 | P95, importin beta-1 subunit, nuclear factor; smal | 98.65 | |
| 2ep4_A | 74 | Ring finger protein 24; zinc binding, ubiquitin, E | 98.64 | |
| 2kiz_A | 69 | E3 ubiquitin-protein ligase arkadia; ring-H2 finge | 98.62 | |
| 1iym_A | 55 | EL5; ring-H2 finger, ubiquitin ligase, DNA binding | 98.61 | |
| 2vgl_B | 591 | AP-2 complex subunit beta-1; cytoplasmic vesicle, | 98.6 | |
| 1v87_A | 114 | Deltex protein 2; ring-H2 domain, zinc-binding dom | 98.59 | |
| 2l0b_A | 91 | E3 ubiquitin-protein ligase praja-1; zinc finger, | 98.57 | |
| 1x4j_A | 75 | Ring finger protein 38; structural genomics, NPPSF | 98.56 | |
| 2vgl_B | 591 | AP-2 complex subunit beta-1; cytoplasmic vesicle, | 98.54 | |
| 2y1n_A | 389 | E3 ubiquitin-protein ligase; ligase-transferase co | 98.5 | |
| 4ic3_A | 74 | E3 ubiquitin-protein ligase XIAP; ring domain, zin | 98.49 | |
| 4ap4_A | 133 | E3 ubiquitin ligase RNF4; ligase-signalling protei | 98.41 | |
| 3b2a_A | 265 | TON_1937, putative uncharacterized protein; heat-r | 98.34 | |
| 2ecg_A | 75 | Baculoviral IAP repeat-containing protein 4; BIRC4 | 98.33 | |
| 1wim_A | 94 | KIAA0161 protein; ring finger domain, UBCM4-intera | 98.27 | |
| 1qgr_A | 876 | Protein (importin beta subunit); transport recepto | 98.26 | |
| 1qgr_A | 876 | Protein (importin beta subunit); transport recepto | 98.24 | |
| 2vje_A | 64 | E3 ubiquitin-protein ligase MDM2; proto-oncogene, | 98.23 | |
| 2ecl_A | 81 | Ring-box protein 2; RNF7, ring domian, zinc-bindin | 98.21 | |
| 2bpt_A | 861 | Importin beta-1 subunit; nuclear transport, nucleo | 98.19 | |
| 1w63_A | 618 | Adapter-related protein complex 1 gamma 1 subunit; | 98.18 | |
| 2bpt_A | 861 | Importin beta-1 subunit; nuclear transport, nucleo | 98.17 | |
| 1w63_A | 618 | Adapter-related protein complex 1 gamma 1 subunit; | 98.16 | |
| 2vje_B | 63 | MDM4 protein; proto-oncogene, phosphorylation, alt | 98.12 | |
| 2yho_A | 79 | E3 ubiquitin-protein ligase mylip; ligase, E2 liga | 98.08 | |
| 1u6g_C | 1230 | TIP120 protein, CAND1; cullin repeat, heat repeat, | 98.08 | |
| 1ibr_B | 462 | P95, importin beta-1 subunit, nuclear factor; smal | 98.07 | |
| 3t6p_A | 345 | Baculoviral IAP repeat-containing protein 2; ring, | 97.99 | |
| 3dpl_R | 106 | Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST | 97.97 | |
| 2qk2_A | 242 | LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 | 97.94 | |
| 2qk2_A | 242 | LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 | 97.88 | |
| 2vgl_A | 621 | Adaptor protein complex AP-2, alpha 2 subunit; cyt | 97.88 | |
| 1ho8_A | 480 | Vacuolar ATP synthase subunit H; heat repeat, hydr | 97.85 | |
| 2ea5_A | 68 | Cell growth regulator with ring finger domain prot | 97.83 | |
| 1u6g_C | 1230 | TIP120 protein, CAND1; cullin repeat, heat repeat, | 97.82 | |
| 2d8s_A | 80 | Cellular modulator of immune recognition; C-MIR, m | 97.73 | |
| 2vgl_A | 621 | Adaptor protein complex AP-2, alpha 2 subunit; cyt | 97.69 | |
| 3b2a_A | 265 | TON_1937, putative uncharacterized protein; heat-r | 97.66 | |
| 1te4_A | 131 | Conserved protein MTH187; methanobacterium thermoa | 97.66 | |
| 4a0k_B | 117 | E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi | 97.59 | |
| 1te4_A | 131 | Conserved protein MTH187; methanobacterium thermoa | 97.58 | |
| 2qk1_A | 249 | Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h | 97.54 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 97.42 | |
| 3dad_A | 339 | FH1/FH2 domain-containing protein 1; formin, FHOD1 | 97.41 | |
| 3dad_A | 339 | FH1/FH2 domain-containing protein 1; formin, FHOD1 | 97.39 | |
| 2qk1_A | 249 | Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h | 97.36 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 97.3 | |
| 3tjz_B | 355 | Coatomer subunit gamma; protein trafficking, golgi | 97.08 | |
| 3tjz_B | 355 | Coatomer subunit gamma; protein trafficking, golgi | 96.84 | |
| 1ho8_A | 480 | Vacuolar ATP synthase subunit H; heat repeat, hydr | 96.64 | |
| 2db0_A | 253 | 253AA long hypothetical protein; heat repeats, hel | 96.62 | |
| 2fv2_A | 268 | RCD1 required for cell differentiation1 homolog; a | 96.5 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 96.49 | |
| 2db0_A | 253 | 253AA long hypothetical protein; heat repeats, hel | 96.46 | |
| 2ct0_A | 74 | Non-SMC element 1 homolog; ring domain, structural | 96.43 | |
| 1vyx_A | 60 | ORF K3, K3RING; zinc-binding protein, ring domain, | 96.37 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 96.29 | |
| 3oc3_A | 800 | Helicase MOT1, MOT1; regulation of transcription, | 95.97 | |
| 4ffb_C | 278 | Protein STU2; tubulin fold, heat repeats, cytoskel | 95.75 | |
| 3k1l_B | 381 | Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A | 95.44 | |
| 3vk6_A | 101 | E3 ubiquitin-protein ligase hakai; HYB, phosphotyr | 95.3 | |
| 3i2d_A | 371 | E3 SUMO-protein ligase SIZ1; signal transduction, | 95.18 | |
| 3ebb_A | 304 | Phospholipase A2-activating protein; armadillo rep | 95.13 | |
| 2of3_A | 266 | ZYG-9; multifunctional macromolecule, kinetochore, | 94.94 | |
| 3ebb_A | 304 | Phospholipase A2-activating protein; armadillo rep | 94.69 | |
| 4ffb_C | 278 | Protein STU2; tubulin fold, heat repeats, cytoskel | 94.36 | |
| 4fo9_A | 360 | E3 SUMO-protein ligase PIAS2; E3 ligase, pinit dom | 94.23 | |
| 1upk_A | 341 | MO25 protein; transferase, armadillo; HET: MSE; 1. | 94.09 | |
| 1wa5_C | 960 | Importin alpha RE-exporter; nuclear transport/comp | 93.54 | |
| 2fv2_A | 268 | RCD1 required for cell differentiation1 homolog; a | 93.43 | |
| 2jun_A | 101 | Midline-1; B-BOX, TRIM, ring finger, alternative s | 93.19 | |
| 1wa5_C | 960 | Importin alpha RE-exporter; nuclear transport/comp | 92.99 | |
| 2of3_A | 266 | ZYG-9; multifunctional macromolecule, kinetochore, | 91.46 | |
| 3u0r_A | 507 | Apoptosis inhibitor 5; heat repeat, armadillo repe | 88.89 | |
| 2f31_A | 233 | Diaphanous protein homolog 1; formin,MDIA1, protei | 87.74 | |
| 2x1g_F | 971 | Cadmus; transport protein, developmental protein, | 87.43 | |
| 3eg5_B | 383 | Protein diaphanous homolog 1; protein-protein comp | 87.23 | |
| 3nw0_A | 238 | Non-structural maintenance of chromosomes element | 87.23 | |
| 2f31_A | 233 | Diaphanous protein homolog 1; formin,MDIA1, protei | 86.83 | |
| 2x1g_F | 971 | Cadmus; transport protein, developmental protein, | 85.49 | |
| 1lrv_A | 244 | LRV, leucine-rich repeat variant; leucine-rich rep | 84.18 | |
| 3eg5_B | 383 | Protein diaphanous homolog 1; protein-protein comp | 83.91 | |
| 3m1i_C | 1049 | Exportin-1; heat repeat, GTP-binding, nucleotide-b | 81.42 | |
| 2bnx_A | 386 | Diaphanous protein homolog 1; autoinhibition, acti | 80.63 | |
| 2bnx_A | 386 | Diaphanous protein homolog 1; autoinhibition, acti | 80.58 |
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.2e-29 Score=272.43 Aligned_cols=265 Identities=26% Similarity=0.279 Sum_probs=237.9
Q ss_pred HHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcc-----------CCHHHHHHHHHHHHHhhcCCc-hHHHHHHc
Q 004761 460 EIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYS-----------EAQLTQEHAVTALLNLSINDE-NKAMIAEA 527 (732)
Q Consensus 460 ~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s-----------~~~~v~~~A~~~L~nLs~~~~-~k~~i~~~ 527 (732)
+.+..|+++|.+++.+ +++|..|++.|++++|+.+|.+ .++.++.+|+++|.||+.++. ++..+...
T Consensus 47 ~~~~~A~~aL~nls~d-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~ 125 (354)
T 3nmw_A 47 HQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSM 125 (354)
T ss_dssp GTHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 3456899999999976 7999999999999999999953 246789999999999998765 77777654
Q ss_pred -CCHHHHHHHHcCCCHHHHHHHHHHHHHhccC--chhHHHHHhcchHHHHHHh-hcCCCHHHHHHHHHHHHHhcc-Cchh
Q 004761 528 -GAIEPLIHVLKSGNGGAKENSAAALFSLSVL--EEYKAKIGRSGAVKALVDL-LGSGTLRGRKDAATALFNLSI-FHEN 602 (732)
Q Consensus 528 -g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~--~~~k~~i~~~g~i~~Lv~l-L~~~~~~~~~~Al~aL~nLs~-~~~n 602 (732)
|++++|+.+|+++++++++.|+++|.+|+.. +++|..|.+.|+||.|+++ +++++..+++.|+.+|+||+. .++|
T Consensus 126 ~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~n 205 (354)
T 3nmw_A 126 KGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTEN 205 (354)
T ss_dssp HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred CCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhh
Confidence 5699999999999999999999999999974 5789999999999999997 466789999999999999999 6688
Q ss_pred HHHHH-hhchHHHHHHhc-CCCh----HHHHHHHHHHHHHhC----ChhhHHHHHHcCcHHHHHHHHhcCCHHHHHHHHH
Q 004761 603 KARII-QAGAVKHLVDLM-DPST----GMVDKAVALLANLST----VGEGRLAIAREGGIPSLVEVVESGSQRGKENAAS 672 (732)
Q Consensus 603 ~~~lv-~~G~V~~Ll~lL-~~~~----~l~e~al~iL~nLa~----~~~~r~~i~~~~~I~~Lv~lL~~~s~~~~e~A~~ 672 (732)
+..++ ..|+++.|+++| +.+. .+++.|+++|.||+. .++++..+.+.|+++.|+++|++++...+++|++
T Consensus 206 k~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~ 285 (354)
T 3nmw_A 206 KADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACG 285 (354)
T ss_dssp HHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHH
T ss_pred hHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHH
Confidence 98888 799999999999 4332 589999999999985 8889999999999999999999999999999999
Q ss_pred HHHHHhcCChHhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHhhccccC
Q 004761 673 ILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFRNQREG 725 (732)
Q Consensus 673 ~L~~L~~~~~~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~~~~~ 725 (732)
+|++|+.++++.+..+++.|+++.|+.+++++++++++.|.++|.+|...++.
T Consensus 286 aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~ 338 (354)
T 3nmw_A 286 TLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPA 338 (354)
T ss_dssp HHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCG
T ss_pred HHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHH
Confidence 99999988899999999999999999999999999999999999999876544
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.9e-28 Score=271.54 Aligned_cols=262 Identities=27% Similarity=0.282 Sum_probs=235.5
Q ss_pred HHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcc-----------CCHHHHHHHHHHHHHhhcCCc-hHHHHHH-cCC
Q 004761 463 ASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYS-----------EAQLTQEHAVTALLNLSINDE-NKAMIAE-AGA 529 (732)
Q Consensus 463 ~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s-----------~~~~v~~~A~~~L~nLs~~~~-~k~~i~~-~g~ 529 (732)
-.|+++|.+++.+ +++|..|.+.|++++|+.+|.. .++.++.+|+++|.||+.+++ ++..+.. .|+
T Consensus 166 ~qAv~aL~nls~~-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~Ga 244 (458)
T 3nmz_A 166 CPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGC 244 (458)
T ss_dssp HHHHHHHHHHTTS-HHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHH
T ss_pred HHHHHHHHHhcCC-HHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCc
Confidence 3899999999765 8999999999999999999952 246789999999999998865 6666765 466
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhccC--chhHHHHHhcchHHHHHHhh-cCCCHHHHHHHHHHHHHhcc-CchhHHH
Q 004761 530 IEPLIHVLKSGNGGAKENSAAALFSLSVL--EEYKAKIGRSGAVKALVDLL-GSGTLRGRKDAATALFNLSI-FHENKAR 605 (732)
Q Consensus 530 l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~--~~~k~~i~~~g~i~~Lv~lL-~~~~~~~~~~Al~aL~nLs~-~~~n~~~ 605 (732)
+++|+.+|.+++.++++.|+++|.+|+.. +++|..|.+.|+|+.|+++| ++++..+++.|+.+|+||+. +++|+..
T Consensus 245 Ip~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~ 324 (458)
T 3nmz_A 245 MRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKAD 324 (458)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHH
Confidence 99999999999999999999999999984 57899999999999999975 56789999999999999999 7789998
Q ss_pred HH-hhchHHHHHHhc-CCCh----HHHHHHHHHHHHHh----CChhhHHHHHHcCcHHHHHHHHhcCCHHHHHHHHHHHH
Q 004761 606 II-QAGAVKHLVDLM-DPST----GMVDKAVALLANLS----TVGEGRLAIAREGGIPSLVEVVESGSQRGKENAASILL 675 (732)
Q Consensus 606 lv-~~G~V~~Ll~lL-~~~~----~l~e~al~iL~nLa----~~~~~r~~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L~ 675 (732)
++ ..|+++.|+.+| ..+. .+++.|+++|.||+ ..++++..+.+.|+++.|+++|.+++...+++|+++|+
T Consensus 325 I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~ 404 (458)
T 3nmz_A 325 ICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLW 404 (458)
T ss_dssp HHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHH
T ss_pred HHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHH
Confidence 88 799999999999 3332 58999999999998 48889999999999999999999999999999999999
Q ss_pred HHhcCChHhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHhhccccC
Q 004761 676 QLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFRNQREG 725 (732)
Q Consensus 676 ~L~~~~~~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~~~~~ 725 (732)
+|+.++++.+..+++.|+++.|+.+++++++++++.|.++|++|....+.
T Consensus 405 nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~p~ 454 (458)
T 3nmz_A 405 NLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPA 454 (458)
T ss_dssp HHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCCSC
T ss_pred HHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHh
Confidence 99988899999999999999999999999999999999999999877643
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.6e-28 Score=275.95 Aligned_cols=276 Identities=22% Similarity=0.246 Sum_probs=240.6
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcC-CchHHHH
Q 004761 446 YVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSIN-DENKAMI 524 (732)
Q Consensus 446 ~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~-~~~k~~i 524 (732)
.++.||+.|++++++.+..|+..|++++.+++.++..+.+.|+||.|+.+|+++++.++..|+++|.||+.+ ++++..+
T Consensus 3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i 82 (457)
T 1xm9_A 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLET 82 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 479999999999999999999999999988888898999999999999999999999999999999999987 7899999
Q ss_pred HHcCCHHHHHHHHc-CCCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhc--------CC--------CHHHHH
Q 004761 525 AEAGAIEPLIHVLK-SGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLG--------SG--------TLRGRK 587 (732)
Q Consensus 525 ~~~g~l~~Lv~lL~-~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~--------~~--------~~~~~~ 587 (732)
++.|++++|+.+|. ++++++++.|+++|++|+..+++|..+.+ |++|.|+.+|. ++ ++.+.+
T Consensus 83 ~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~ 161 (457)
T 1xm9_A 83 RRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFF 161 (457)
T ss_dssp HHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHH
T ss_pred HHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHH
Confidence 99999999999999 88999999999999999999999999999 99999999993 22 356677
Q ss_pred HHHHHHHHhccCchhHHHHHhh-chHHHHHHhc-C------CChHHHHHHHHHHHHHhCCh-------------------
Q 004761 588 DAATALFNLSIFHENKARIIQA-GAVKHLVDLM-D------PSTGMVDKAVALLANLSTVG------------------- 640 (732)
Q Consensus 588 ~Al~aL~nLs~~~~n~~~lv~~-G~V~~Ll~lL-~------~~~~l~e~al~iL~nLa~~~------------------- 640 (732)
.|+++|+|||.+++++..+++. |+++.|+.+| + .+..+++.|+.+|.||+...
T Consensus 162 ~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~ 241 (457)
T 1xm9_A 162 NATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAY 241 (457)
T ss_dssp HHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----
T ss_pred HHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccccccc
Confidence 9999999999998899999997 9999999999 3 35568899999999997421
Q ss_pred --------------------------------hhHHHHHHcCcHHHHHHHHhc-CCHHHHHHHHHHHHHHhcCChHh---
Q 004761 641 --------------------------------EGRLAIAREGGIPSLVEVVES-GSQRGKENAASILLQLCLHSPKF--- 684 (732)
Q Consensus 641 --------------------------------~~r~~i~~~~~I~~Lv~lL~~-~s~~~~e~A~~~L~~L~~~~~~~--- 684 (732)
.+.+.+.+.++++.|+.+|.+ .++..++.|+++|.++|.++...
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~ 321 (457)
T 1xm9_A 242 TEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSG 321 (457)
T ss_dssp ------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHH
T ss_pred ccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHH
Confidence 122233445678899999876 46899999999999999865332
Q ss_pred H-HHHH-hCCCHHHHHHchhcCChHHHHHHHHHHHHhhcc
Q 004761 685 C-TLVL-QEGAVPPLVGLSQSGTPRAKEKAQQLLSHFRNQ 722 (732)
Q Consensus 685 ~-~~v~-~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~~ 722 (732)
. +.++ +.|++|.|+.++.+++.++++.|.++|+++...
T Consensus 322 ~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~ 361 (457)
T 1xm9_A 322 MSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH 361 (457)
T ss_dssp HHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcC
Confidence 1 3344 689999999999999999999999999999764
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.7e-27 Score=271.08 Aligned_cols=279 Identities=22% Similarity=0.239 Sum_probs=240.2
Q ss_pred CchHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcC--CchH
Q 004761 444 TPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSIN--DENK 521 (732)
Q Consensus 444 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~--~~~k 521 (732)
...++.||++|.+++++.+..|+..|++++..+.++|..+++.|+||.|+.+|++++..+++.|+++|.||+.. ++||
T Consensus 47 ~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk 126 (584)
T 3l6x_A 47 QPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNK 126 (584)
T ss_dssp CCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHH
T ss_pred cccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHH
Confidence 55689999999999999999999999999998999999999999999999999999999999999999999984 7899
Q ss_pred HHHHHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhc------------------CCC
Q 004761 522 AMIAEAGAIEPLIHVLKS-GNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLG------------------SGT 582 (732)
Q Consensus 522 ~~i~~~g~l~~Lv~lL~~-~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~------------------~~~ 582 (732)
..+++.|++++|+.+|.+ ++.+++++|+++|++|+..+++|..|+. +++|+|++++. ..+
T Consensus 127 ~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d 205 (584)
T 3l6x_A 127 IAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHIEW 205 (584)
T ss_dssp HHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHH-HTHHHHHHHTHHHHHCCC----------CCCC
T ss_pred HHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHh-ccHHHHHHHHhccccccccccccccccccccc
Confidence 999999999999999997 5788999999999999999999999995 57999999872 125
Q ss_pred HHHHHHHHHHHHHhccCch-hHHHHHh-hchHHHHHHhc-C------CChHHHHHHHHHHHHHhCChh------------
Q 004761 583 LRGRKDAATALFNLSIFHE-NKARIIQ-AGAVKHLVDLM-D------PSTGMVDKAVALLANLSTVGE------------ 641 (732)
Q Consensus 583 ~~~~~~Al~aL~nLs~~~~-n~~~lv~-~G~V~~Ll~lL-~------~~~~l~e~al~iL~nLa~~~~------------ 641 (732)
..+++.|+.+|.||+..++ +|..+++ .|+++.|+.+| + .+...++.|+++|.||+...+
T Consensus 206 ~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~ 285 (584)
T 3l6x_A 206 ESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEA 285 (584)
T ss_dssp HHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC----
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhh
Confidence 7899999999999999875 5888887 57788999998 2 466789999999999987521
Q ss_pred --------------hHHHHHHcCcHHHHHHHHh-cCCHHHHHHHHHHHHHHhcCCh----HhHHHHHhCCCHHHHHHchh
Q 004761 642 --------------GRLAIAREGGIPSLVEVVE-SGSQRGKENAASILLQLCLHSP----KFCTLVLQEGAVPPLVGLSQ 702 (732)
Q Consensus 642 --------------~r~~i~~~~~I~~Lv~lL~-~~s~~~~e~A~~~L~~L~~~~~----~~~~~v~~~G~i~~L~~Ll~ 702 (732)
|.+.+.+.++++.|+.+|. +.++.++|+|+++|.+||.++. ..+..+.++|+++.|+.|+.
T Consensus 286 ~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~ 365 (584)
T 3l6x_A 286 APNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLT 365 (584)
T ss_dssp ----------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGG
T ss_pred cccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHc
Confidence 1112223345678899996 4689999999999999998652 22334455789999999999
Q ss_pred cCChHHHHHHHHHHHHhhccc
Q 004761 703 SGTPRAKEKAQQLLSHFRNQR 723 (732)
Q Consensus 703 ~g~~~~k~kA~~lL~~l~~~~ 723 (732)
++++.+++.|.++|++|....
T Consensus 366 s~~~~v~~~A~~aL~nLs~~~ 386 (584)
T 3l6x_A 366 NEHERVVKAASGALRNLAVDA 386 (584)
T ss_dssp CSCHHHHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHHhCCh
Confidence 999999999999999997653
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 | Back alignment and structure |
|---|
Probab=99.95 E-value=2.2e-26 Score=258.63 Aligned_cols=282 Identities=21% Similarity=0.230 Sum_probs=245.4
Q ss_pred cccCchHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhc-cCCHHHHHHHHHHHHHhhcCCc
Q 004761 441 VTTTPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLY-SEAQLTQEHAVTALLNLSINDE 519 (732)
Q Consensus 441 ~~~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~-s~~~~v~~~A~~~L~nLs~~~~ 519 (732)
....+.|+.||++|++++++.+..|+++|++++..++++|..+++.|+||.|+.+|. ++++.+++.|+++|.||+.+++
T Consensus 40 i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~ 119 (457)
T 1xm9_A 40 VYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDE 119 (457)
T ss_dssp HHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSS
T ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHH
Confidence 445788999999999999999999999999999988999999999999999999999 8899999999999999999988
Q ss_pred hHHHHHHcCCHHHHHHHHc--------CC--------CHHHHHHHHHHHHHhccCchhHHHHHhc-chHHHHHHhhcCC-
Q 004761 520 NKAMIAEAGAIEPLIHVLK--------SG--------NGGAKENSAAALFSLSVLEEYKAKIGRS-GAVKALVDLLGSG- 581 (732)
Q Consensus 520 ~k~~i~~~g~l~~Lv~lL~--------~~--------~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~-g~i~~Lv~lL~~~- 581 (732)
+|..+++ |++++|+.+|. ++ +.++..+|+++|+||+..++++..+.+. |+++.|+.+|+++
T Consensus 120 ~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~ 198 (457)
T 1xm9_A 120 LKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCV 198 (457)
T ss_dssp THHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHH
T ss_pred hHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhc
Confidence 9999999 99999999993 22 3456669999999999988889999987 9999999888630
Q ss_pred --------------------------------------------------------------------------------
Q 004761 582 -------------------------------------------------------------------------------- 581 (732)
Q Consensus 582 -------------------------------------------------------------------------------- 581 (732)
T Consensus 199 ~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (457)
T 1xm9_A 199 AASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGW 278 (457)
T ss_dssp HHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----------------------------CCCCCSSCCGGGG
T ss_pred cccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHH
Confidence
Q ss_pred ------------------CHHHHHHHHHHHHHhccCchh------HHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHH
Q 004761 582 ------------------TLRGRKDAATALFNLSIFHEN------KARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANL 636 (732)
Q Consensus 582 ------------------~~~~~~~Al~aL~nLs~~~~n------~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nL 636 (732)
++..++.|+++|.||+..+.. +..+.++|++|.|+++| +++..++..|+++|.||
T Consensus 279 l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nl 358 (457)
T 1xm9_A 279 LYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNM 358 (457)
T ss_dssp GGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHH
Confidence 244566788999999875432 22334689999999999 78899999999999999
Q ss_pred hCChhhHHHHHHcCcHHHHHHHHhcCC------HHHHHHHHHHHHHHhcCChHhHHHHHhCCCHHHHHHchhcC-ChHHH
Q 004761 637 STVGEGRLAIAREGGIPSLVEVVESGS------QRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSG-TPRAK 709 (732)
Q Consensus 637 a~~~~~r~~i~~~~~I~~Lv~lL~~~s------~~~~e~A~~~L~~L~~~~~~~~~~v~~~G~i~~L~~Ll~~g-~~~~k 709 (732)
+.+++.+..|.. ++++.|+++|..++ ++....++++|.+++.++++....+.+.|+++.|+.++.++ +++++
T Consensus 359 s~~~~~~~~i~~-~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~ 437 (457)
T 1xm9_A 359 SRHPLLHRVMGN-QVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAA 437 (457)
T ss_dssp HTSGGGHHHHHH-HTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHH
T ss_pred hcCHHHHHHHHH-hhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHH
Confidence 998888776654 79999999998763 46788999999999998899999999999999999999999 99999
Q ss_pred HHHHHHHHHhhcccc
Q 004761 710 EKAQQLLSHFRNQRE 724 (732)
Q Consensus 710 ~kA~~lL~~l~~~~~ 724 (732)
++|..+|.++..+++
T Consensus 438 ~~A~~~L~~~~~~~~ 452 (457)
T 1xm9_A 438 EAARLLLSDMWSSKE 452 (457)
T ss_dssp HHHHHHHHTTSSSTT
T ss_pred HHHHHHHHHHHcchh
Confidence 999999998876554
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.5e-26 Score=271.69 Aligned_cols=281 Identities=16% Similarity=0.190 Sum_probs=251.3
Q ss_pred cccCchHHHHHHHhcCCCHHHHHHHHHHHHHHhccCh-----------------------------hhH---HHHHhcCC
Q 004761 441 VTTTPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNM-----------------------------ENR---MIIGNCGA 488 (732)
Q Consensus 441 ~~~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~-----------------------------~~r---~~i~~~G~ 488 (732)
..+.+.++.||++|++++...+..|++.|.+++...+ .++ ..++++|+
T Consensus 417 v~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGa 496 (810)
T 3now_A 417 IEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGI 496 (810)
T ss_dssp HHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTH
T ss_pred HHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcC
Confidence 4456889999999999999999999999999997542 123 67789999
Q ss_pred HHHHHHhhccCCHHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHH--
Q 004761 489 IPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIG-- 566 (732)
Q Consensus 489 I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~-- 566 (732)
+|.|+.+|+++++.++++|+++|.||+.+++++..+++.|++++|+.+|.+++...+.+|+++|.+|+...+....+.
T Consensus 497 Vp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~ 576 (810)
T 3now_A 497 TTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQ 576 (810)
T ss_dssp HHHHHHHHTCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcch
Confidence 999999999999999999999999999988899999999999999999999999999999999999987544433322
Q ss_pred -hcchHHHHHHhhcCC-CHHHHHHHHHHHHHhccCc-hhHHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCChhh
Q 004761 567 -RSGAVKALVDLLGSG-TLRGRKDAATALFNLSIFH-ENKARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGEG 642 (732)
Q Consensus 567 -~~g~i~~Lv~lL~~~-~~~~~~~Al~aL~nLs~~~-~n~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~~ 642 (732)
..|++|+|+++|.++ +...+..|+.||.||+..+ +++..++++|+++.|+.+| +.+..++..|+.+|+||+.+++.
T Consensus 577 ~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~ 656 (810)
T 3now_A 577 RSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDV 656 (810)
T ss_dssp HHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHH
T ss_pred hhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHH
Confidence 247999999999865 4556678999999999975 6888999999999999999 88888999999999999999998
Q ss_pred HHHHHH-cCcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHhHHHHHh-CCCHHHHHHchhcCChHHHHHHHHHHHHhh
Q 004761 643 RLAIAR-EGGIPSLVEVVESGSQRGKENAASILLQLCLHSPKFCTLVLQ-EGAVPPLVGLSQSGTPRAKEKAQQLLSHFR 720 (732)
Q Consensus 643 r~~i~~-~~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~v~~-~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~ 720 (732)
+..+.+ .|+++.|+.++.+.+...++.|+++|.+++.+++..++.+++ .|+++.|+.++.+++.++++.|.++|.++.
T Consensus 657 ~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~ 736 (810)
T 3now_A 657 IKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMI 736 (810)
T ss_dssp HHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 888885 678999999999999999999999999999988888899998 899999999999999999999999999986
Q ss_pred c
Q 004761 721 N 721 (732)
Q Consensus 721 ~ 721 (732)
.
T Consensus 737 ~ 737 (810)
T 3now_A 737 N 737 (810)
T ss_dssp T
T ss_pred h
Confidence 5
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.1e-26 Score=256.56 Aligned_cols=281 Identities=20% Similarity=0.209 Sum_probs=243.2
Q ss_pred cccCchHHHHHHHhcCC------------CHHHHHHHHHHHHHHhccChhhHHHHHhcCCH----------HHHHHhhcc
Q 004761 441 VTTTPYVKKLIEDLNST------------SNEIQASAAAELRLLAKHNMENRMIIGNCGAI----------PPLLSLLYS 498 (732)
Q Consensus 441 ~~~~~~i~~Lv~~L~s~------------~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I----------~~Lv~lL~s 498 (732)
....|.++.||++|+.. +++.+.+|+++|.+++..+++......+.|++ +.++.++.+
T Consensus 66 ~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 145 (458)
T 3nmz_A 66 MRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEA 145 (458)
T ss_dssp HHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHh
Confidence 45578899999999863 37999999999999999888888777777777 666777765
Q ss_pred CC--HH-----HH-------HHHHHHHHHhhcCCchHHHHHHcCCHHHHHHHHcC-----------CCHHHHHHHHHHHH
Q 004761 499 EA--QL-----TQ-------EHAVTALLNLSINDENKAMIAEAGAIEPLIHVLKS-----------GNGGAKENSAAALF 553 (732)
Q Consensus 499 ~~--~~-----v~-------~~A~~~L~nLs~~~~~k~~i~~~g~l~~Lv~lL~~-----------~~~e~~~~Aa~~L~ 553 (732)
.. .+ +. .+|+++|.|++.++++|..|.+.|++++|+.+|.. .++.++.+|+++|.
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~ 225 (458)
T 3nmz_A 146 HEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALT 225 (458)
T ss_dssp TSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred hccccccccCCccchhhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHH
Confidence 42 11 33 39999999999999999999999999999999952 23678999999999
Q ss_pred HhccCch-hHHHHHhc-chHHHHHHhhcCCCHHHHHHHHHHHHHhccC--chhHHHHHhhchHHHHHHhc--CCChHHHH
Q 004761 554 SLSVLEE-YKAKIGRS-GAVKALVDLLGSGTLRGRKDAATALFNLSIF--HENKARIIQAGAVKHLVDLM--DPSTGMVD 627 (732)
Q Consensus 554 ~Ls~~~~-~k~~i~~~-g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~--~~n~~~lv~~G~V~~Ll~lL--~~~~~l~e 627 (732)
+|+..++ ++..+... |+||.|+.+|+++++.+++.|+++|.||+.. ++++..+++.|+++.|+++| +.+..+.+
T Consensus 226 nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~ 305 (458)
T 3nmz_A 226 NLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLK 305 (458)
T ss_dssp HHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHH
T ss_pred HHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHH
Confidence 9998665 67777654 7799999999999999999999999999985 56899999999999999986 56788999
Q ss_pred HHHHHHHHHhC-ChhhHHHHH-HcCcHHHHHHHHhcCCH----HHHHHHHHHHHHHhc---CChHhHHHHHhCCCHHHHH
Q 004761 628 KAVALLANLST-VGEGRLAIA-REGGIPSLVEVVESGSQ----RGKENAASILLQLCL---HSPKFCTLVLQEGAVPPLV 698 (732)
Q Consensus 628 ~al~iL~nLa~-~~~~r~~i~-~~~~I~~Lv~lL~~~s~----~~~e~A~~~L~~L~~---~~~~~~~~v~~~G~i~~L~ 698 (732)
.|+.+|+||+. +++++..+. ..|+++.|+++|.++++ ..+++|+++|.+|+. .+++++..+.+.|+++.|+
T Consensus 306 ~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv 385 (458)
T 3nmz_A 306 SVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLL 385 (458)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHH
Confidence 99999999998 778888887 68999999999987654 489999999999997 6889999999999999999
Q ss_pred HchhcCChHHHHHHHHHHHHhhc
Q 004761 699 GLSQSGTPRAKEKAQQLLSHFRN 721 (732)
Q Consensus 699 ~Ll~~g~~~~k~kA~~lL~~l~~ 721 (732)
.++.+++..+++.|.++|.++..
T Consensus 386 ~LL~~~~~~v~~~A~~aL~nLa~ 408 (458)
T 3nmz_A 386 QHLKSHSLTIVSNACGTLWNLSA 408 (458)
T ss_dssp HHSSCSCHHHHHHHHHHHHHHHS
T ss_pred HHHcCCChHHHHHHHHHHHHHHc
Confidence 99999999999999999999973
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A | Back alignment and structure |
|---|
Probab=99.95 E-value=9.5e-26 Score=256.77 Aligned_cols=282 Identities=22% Similarity=0.259 Sum_probs=238.6
Q ss_pred ccccCchHHHHHHHhcCCCHHHHHHHHHHHHHHhcc-ChhhHHHHHhcCCHHHHHHhhcc-CCHHHHHHHHHHHHHhhcC
Q 004761 440 EVTTTPYVKKLIEDLNSTSNEIQASAAAELRLLAKH-NMENRMIIGNCGAIPPLLSLLYS-EAQLTQEHAVTALLNLSIN 517 (732)
Q Consensus 440 ~~~~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~-~~~~r~~i~~~G~I~~Lv~lL~s-~~~~v~~~A~~~L~nLs~~ 517 (732)
.....+.|+.||++|++++.+++..|+++|++|+.. +.++|..|++.|+|+.|+.+|++ .+..++++|+.+|+||+.+
T Consensus 85 ~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~ 164 (584)
T 3l6x_A 85 DVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSH 164 (584)
T ss_dssp HHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTS
T ss_pred HHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC
Confidence 355578899999999999999999999999999985 68999999999999999999997 6889999999999999999
Q ss_pred CchHHHHHHcCCHHHHHHHHc------------------CCCHHHHHHHHHHHHHhccCc-hhHHHHHhc-chHHHHHHh
Q 004761 518 DENKAMIAEAGAIEPLIHVLK------------------SGNGGAKENSAAALFSLSVLE-EYKAKIGRS-GAVKALVDL 577 (732)
Q Consensus 518 ~~~k~~i~~~g~l~~Lv~lL~------------------~~~~e~~~~Aa~~L~~Ls~~~-~~k~~i~~~-g~i~~Lv~l 577 (732)
+.+|..|++ +++++|+.+|. ..+.+++++|+++|+||+... +++..|.+. |+++.|+.+
T Consensus 165 ~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~ 243 (584)
T 3l6x_A 165 DSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFI 243 (584)
T ss_dssp GGGHHHHHH-HTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHH
T ss_pred chhhHHHHh-ccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHH
Confidence 999999986 57999999771 124789999999999999876 447777765 666677776
Q ss_pred hcC--------------------------------------------------------------------------CCH
Q 004761 578 LGS--------------------------------------------------------------------------GTL 583 (732)
Q Consensus 578 L~~--------------------------------------------------------------------------~~~ 583 (732)
|++ .++
T Consensus 244 L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~ 323 (584)
T 3l6x_A 244 VQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTP 323 (584)
T ss_dssp HHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCH
T ss_pred HHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCH
Confidence 542 124
Q ss_pred HHHHHHHHHHHHhccCc-----hhHHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCChhhHHHHHHcCcHHHHHH
Q 004761 584 RGRKDAATALFNLSIFH-----ENKARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVE 657 (732)
Q Consensus 584 ~~~~~Al~aL~nLs~~~-----~n~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~~r~~i~~~~~I~~Lv~ 657 (732)
.+++.|+.||.|||... .++..+.+.|+++.|+++| ..+..+++.|+++|.||+.++..+..| ..|+++.||.
T Consensus 324 ~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~~~I-~~g~ip~LV~ 402 (584)
T 3l6x_A 324 AILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKELI-GKHAIPNLVK 402 (584)
T ss_dssp HHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHHHHH-HhCCHHHHHH
Confidence 44566777777776543 2333445579999999999 788899999999999999998888766 6789999999
Q ss_pred HHhcC--------CHHHHHHHHHHHHHHhcCChHhHHHHHhCCCHHHHHHchhcC--ChHHHHHHHHHHHHhhccc
Q 004761 658 VVESG--------SQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSG--TPRAKEKAQQLLSHFRNQR 723 (732)
Q Consensus 658 lL~~~--------s~~~~e~A~~~L~~L~~~~~~~~~~v~~~G~i~~L~~Ll~~g--~~~~k~kA~~lL~~l~~~~ 723 (732)
+|.++ +.+....|+++|.+|+..++++.+.+.+.|+++.|+.++.++ .+++++.|..+|.+|..+.
T Consensus 403 LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~~ 478 (584)
T 3l6x_A 403 NLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYK 478 (584)
T ss_dssp TSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTSH
T ss_pred HhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcCH
Confidence 99876 578899999999999999999999999999999999999987 7899999999999997543
|
| >3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... | Back alignment and structure |
|---|
Probab=99.94 E-value=5e-26 Score=259.31 Aligned_cols=283 Identities=21% Similarity=0.266 Sum_probs=252.7
Q ss_pred cccccCchHHHHHHHhcC-CCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcC
Q 004761 439 DEVTTTPYVKKLIEDLNS-TSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSIN 517 (732)
Q Consensus 439 ~~~~~~~~i~~Lv~~L~s-~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~ 517 (732)
+.....|.|+.||++|++ +++++|..|+++|.+++..+++++..+++.|+||.|+.+|.+++..+++.|+++|.||+.+
T Consensus 94 ~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d 173 (510)
T 3ul1_B 94 DNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGD 173 (510)
T ss_dssp HHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC
Confidence 345668899999999974 5689999999999999999999999999999999999999999999999999999999987
Q ss_pred -CchHHHHHHcCCHHHHHHHHcCCC-----HHHHHHHHHHHHHhccCchhHHHH-HhcchHHHHHHhhcCCCHHHHHHHH
Q 004761 518 -DENKAMIAEAGAIEPLIHVLKSGN-----GGAKENSAAALFSLSVLEEYKAKI-GRSGAVKALVDLLGSGTLRGRKDAA 590 (732)
Q Consensus 518 -~~~k~~i~~~g~l~~Lv~lL~~~~-----~e~~~~Aa~~L~~Ls~~~~~k~~i-~~~g~i~~Lv~lL~~~~~~~~~~Al 590 (732)
+.++..+.+.|++++|+.+|...+ .....+++++|.+++........+ ...|++|.|+.+|.++++.++..|+
T Consensus 174 ~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~ 253 (510)
T 3ul1_B 174 GSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSC 253 (510)
T ss_dssp CHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHH
T ss_pred CHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHH
Confidence 456888899999999999998764 346789999999999866544333 3458999999999999999999999
Q ss_pred HHHHHhccCchhH-HHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCCh-hhHHHHHHcCcHHHHHHHHhcCCHHHH
Q 004761 591 TALFNLSIFHENK-ARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVG-EGRLAIAREGGIPSLVEVVESGSQRGK 667 (732)
Q Consensus 591 ~aL~nLs~~~~n~-~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~-~~r~~i~~~~~I~~Lv~lL~~~s~~~~ 667 (732)
++|.+|+..+.++ ..+++.|+++.|+++| +.+..++..++.+|+|++... ..+..+++.|+++.|+.++.++++..+
T Consensus 254 ~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~ 333 (510)
T 3ul1_B 254 WAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQ 333 (510)
T ss_dssp HHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHH
T ss_pred HHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHH
Confidence 9999999977655 4567899999999999 788899999999999997755 456788899999999999999999999
Q ss_pred HHHHHHHHHHhcCChHhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHhhc
Q 004761 668 ENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFRN 721 (732)
Q Consensus 668 e~A~~~L~~L~~~~~~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~ 721 (732)
+.|+++|.+++.+++.....+.+.|+++.|+.++.+++.++|+.|.++|.++..
T Consensus 334 ~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~ 387 (510)
T 3ul1_B 334 KEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTS 387 (510)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999999999999998864
|
| >3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-25 Score=257.28 Aligned_cols=283 Identities=21% Similarity=0.255 Sum_probs=253.8
Q ss_pred cccccCchHHHHHHHhc-CCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcC
Q 004761 439 DEVTTTPYVKKLIEDLN-STSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSIN 517 (732)
Q Consensus 439 ~~~~~~~~i~~Lv~~L~-s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~ 517 (732)
+.....|.|+.||++|. +.+++.+..|+++|.+++.++.+++..+++.|+||.|+.+|.+++..+++.|+++|.||+.+
T Consensus 113 ~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~ 192 (529)
T 3tpo_A 113 DNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGA 192 (529)
T ss_dssp HHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcc
Confidence 34566889999999997 45689999999999999999999999999999999999999999999999999999999987
Q ss_pred -CchHHHHHHcCCHHHHHHHHcCCC-----HHHHHHHHHHHHHhccCchhHHH-HHhcchHHHHHHhhcCCCHHHHHHHH
Q 004761 518 -DENKAMIAEAGAIEPLIHVLKSGN-----GGAKENSAAALFSLSVLEEYKAK-IGRSGAVKALVDLLGSGTLRGRKDAA 590 (732)
Q Consensus 518 -~~~k~~i~~~g~l~~Lv~lL~~~~-----~e~~~~Aa~~L~~Ls~~~~~k~~-i~~~g~i~~Lv~lL~~~~~~~~~~Al 590 (732)
+.++..+.+.|++++|+.+|...+ .....+++++|.+++........ ....|++|.|+.+|.++++.++..|+
T Consensus 193 ~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~ 272 (529)
T 3tpo_A 193 GSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSC 272 (529)
T ss_dssp CHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHH
T ss_pred CHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHH
Confidence 567889999999999999998654 35678999999999986654433 33458999999999999999999999
Q ss_pred HHHHHhccCchhH-HHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCCh-hhHHHHHHcCcHHHHHHHHhcCCHHHH
Q 004761 591 TALFNLSIFHENK-ARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVG-EGRLAIAREGGIPSLVEVVESGSQRGK 667 (732)
Q Consensus 591 ~aL~nLs~~~~n~-~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~-~~r~~i~~~~~I~~Lv~lL~~~s~~~~ 667 (732)
++|.+|+..+.++ ..++..|+++.|+++| +.+..++..++.+|+|++.+. ..+..+.+.|+++.|+.++.++++..+
T Consensus 273 ~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~ 352 (529)
T 3tpo_A 273 WAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQ 352 (529)
T ss_dssp HHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHH
T ss_pred HHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHH
Confidence 9999999977654 4677899999999999 888999999999999998754 567788899999999999999999999
Q ss_pred HHHHHHHHHHhcCChHhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHhhc
Q 004761 668 ENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFRN 721 (732)
Q Consensus 668 e~A~~~L~~L~~~~~~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~ 721 (732)
..|+++|.+++.+++.....+.+.|+++.|+.++.+++..+++.|.++|.++..
T Consensus 353 ~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~ 406 (529)
T 3tpo_A 353 KEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTS 406 (529)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999999999999998864
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A | Back alignment and structure |
|---|
Probab=99.94 E-value=5e-26 Score=246.16 Aligned_cols=245 Identities=22% Similarity=0.237 Sum_probs=219.6
Q ss_pred cccccCchHHHHHHHhcC-----------CCHHHHHHHHHHHHHHhccChhhHHHHHhc-CCHHHHHHhhccCCHHHHHH
Q 004761 439 DEVTTTPYVKKLIEDLNS-----------TSNEIQASAAAELRLLAKHNMENRMIIGNC-GAIPPLLSLLYSEAQLTQEH 506 (732)
Q Consensus 439 ~~~~~~~~i~~Lv~~L~s-----------~~~~~~~~Al~~L~~La~~~~~~r~~i~~~-G~I~~Lv~lL~s~~~~v~~~ 506 (732)
+...+.+.++.|+++|.+ .+++.+..|++.|++++..+..+|..+... |+||.|+.+|+++++++++.
T Consensus 67 ~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~ 146 (354)
T 3nmw_A 67 HAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQV 146 (354)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHH
T ss_pred HHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHH
Confidence 446668889999999952 246789999999999999988899888755 56999999999999999999
Q ss_pred HHHHHHHhhcC--CchHHHHHHcCCHHHHHHH-HcCCCHHHHHHHHHHHHHhcc-CchhHHHHH-hcchHHHHHHhhcCC
Q 004761 507 AVTALLNLSIN--DENKAMIAEAGAIEPLIHV-LKSGNGGAKENSAAALFSLSV-LEEYKAKIG-RSGAVKALVDLLGSG 581 (732)
Q Consensus 507 A~~~L~nLs~~--~~~k~~i~~~g~l~~Lv~l-L~~~~~e~~~~Aa~~L~~Ls~-~~~~k~~i~-~~g~i~~Lv~lL~~~ 581 (732)
|+++|.||+.. +.+|..+.+.|++++|+.+ +++++.++++.|+++|++|+. .+++|..|. ..|+++.|+.+|+++
T Consensus 147 A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~ 226 (354)
T 3nmw_A 147 IASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYR 226 (354)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCC
T ss_pred HHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccC
Confidence 99999999985 4689999999999999997 466789999999999999998 668888888 679999999999876
Q ss_pred CH----HHHHHHHHHHHHhcc----CchhHHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHh-CChhhHHHHHHcCc
Q 004761 582 TL----RGRKDAATALFNLSI----FHENKARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLS-TVGEGRLAIAREGG 651 (732)
Q Consensus 582 ~~----~~~~~Al~aL~nLs~----~~~n~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa-~~~~~r~~i~~~~~ 651 (732)
+. .+++.|+.+|.||+. .++++..++++|+++.|+++| +.+..+++.|+++|.||+ ..++.+..+.+.|+
T Consensus 227 ~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~ 306 (354)
T 3nmw_A 227 SQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGA 306 (354)
T ss_dssp CSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTH
T ss_pred CCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCC
Confidence 54 589999999999996 778999999999999999999 778899999999999999 47889999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhcCChH
Q 004761 652 IPSLVEVVESGSQRGKENAASILLQLCLHSPK 683 (732)
Q Consensus 652 I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~ 683 (732)
++.|+++++++++..++.|+++|.+|+.+++.
T Consensus 307 i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~ 338 (354)
T 3nmw_A 307 VSMLKNLIHSKHKMIAMGSAAALRNLMANRPA 338 (354)
T ss_dssp HHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCG
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHH
Confidence 99999999999999999999999999997665
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.9e-25 Score=259.71 Aligned_cols=282 Identities=20% Similarity=0.181 Sum_probs=251.5
Q ss_pred cccCchHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCch
Q 004761 441 VTTTPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDEN 520 (732)
Q Consensus 441 ~~~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~ 520 (732)
....|.++.|+++|+++++.++..|+++|.+++. +.++|..+.+.|++|+|+.+|.+++...++.|+++|.||+.+.+.
T Consensus 491 VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~-d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p 569 (810)
T 3now_A 491 LANEGITTALCALAKTESHNSQELIARVLNAVCG-LKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINP 569 (810)
T ss_dssp HHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCH
T ss_pred HHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCh
Confidence 4556889999999999999999999999999996 467999999999999999999999999999999999999875443
Q ss_pred HHHH---HHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHhccC-chhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHH
Q 004761 521 KAMI---AEAGAIEPLIHVLKSG-NGGAKENSAAALFSLSVL-EEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFN 595 (732)
Q Consensus 521 k~~i---~~~g~l~~Lv~lL~~~-~~e~~~~Aa~~L~~Ls~~-~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~n 595 (732)
...+ ...|++++|+.+|.++ +...+..|+++|.||+.. ++++..+.+.|+++.|+.+|.++++.+++.|+.+|.|
T Consensus 570 ~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~N 649 (810)
T 3now_A 570 EVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCN 649 (810)
T ss_dssp HHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHH
T ss_pred hhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 3222 1246999999999866 345567899999999986 5778889999999999999999999999999999999
Q ss_pred hccCchhHHHHHh-hchHHHHHHhc-CCChHHHHHHHHHHHHHhC-ChhhHHHHHH-cCcHHHHHHHHhcCCHHHHHHHH
Q 004761 596 LSIFHENKARIIQ-AGAVKHLVDLM-DPSTGMVDKAVALLANLST-VGEGRLAIAR-EGGIPSLVEVVESGSQRGKENAA 671 (732)
Q Consensus 596 Ls~~~~n~~~lv~-~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~-~~~~r~~i~~-~~~I~~Lv~lL~~~s~~~~e~A~ 671 (732)
|+.+++.+..++. .|+++.|+.++ +.+..++..|+++|+||+. ++.....+++ .|+++.|+.++.+++.+.++.|+
T Consensus 650 La~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~ 729 (810)
T 3now_A 650 LVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGI 729 (810)
T ss_dssp HTTSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHH
T ss_pred HhCChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHH
Confidence 9999999988886 79999999999 7788999999999999998 6777888888 89999999999999999999999
Q ss_pred HHHHHHhcCChHhHHHHHhCCCHHHHHHchhcC---ChHHHHHHHHHHHHhhccc
Q 004761 672 SILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSG---TPRAKEKAQQLLSHFRNQR 723 (732)
Q Consensus 672 ~~L~~L~~~~~~~~~~v~~~G~i~~L~~Ll~~g---~~~~k~kA~~lL~~l~~~~ 723 (732)
++|.|++.++++....+.+.|+++.|+.+++.. ++++.+.|..+|+.+-++.
T Consensus 730 ~aL~NL~~~s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~~g 784 (810)
T 3now_A 730 VIILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERYR 784 (810)
T ss_dssp HHHHHHHTTCHHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHhCC
Confidence 999999998888999999999999999999765 5789999999999986554
|
| >4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A | Back alignment and structure |
|---|
Probab=99.93 E-value=4.3e-24 Score=243.99 Aligned_cols=282 Identities=24% Similarity=0.260 Sum_probs=255.0
Q ss_pred cccCchHHHHHHHhcCCC-HHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcC-C
Q 004761 441 VTTTPYVKKLIEDLNSTS-NEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSIN-D 518 (732)
Q Consensus 441 ~~~~~~i~~Lv~~L~s~~-~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~-~ 518 (732)
....+.++.|++.|.+++ ++++..|+++|.+++..+++++..+.+.|+++.|+.+|.++++.+++.|+++|.||+.+ +
T Consensus 113 ~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~ 192 (528)
T 4b8j_A 113 VIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSP 192 (528)
T ss_dssp HHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCH
T ss_pred HHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCh
Confidence 344678999999999886 99999999999999999899999999999999999999999999999999999999977 4
Q ss_pred chHHHHHHcCCHHHHHHHH-cCCCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 004761 519 ENKAMIAEAGAIEPLIHVL-KSGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLS 597 (732)
Q Consensus 519 ~~k~~i~~~g~l~~Lv~lL-~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs 597 (732)
.++..+...|++++|+.+| ...+..++.+|+++|.+|+............|+++.|+.+|.++++.++..|+.+|.+|+
T Consensus 193 ~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~ 272 (528)
T 4b8j_A 193 KCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLS 272 (528)
T ss_dssp HHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 5688888999999999999 566899999999999999986544444555799999999999999999999999999999
Q ss_pred cCchhH-HHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCC-hhhHHHHHHcCcHHHHHHHHhcC-CHHHHHHHHHH
Q 004761 598 IFHENK-ARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTV-GEGRLAIAREGGIPSLVEVVESG-SQRGKENAASI 673 (732)
Q Consensus 598 ~~~~n~-~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~-~~~r~~i~~~~~I~~Lv~lL~~~-s~~~~e~A~~~ 673 (732)
...+++ ..+++.|+++.|+.+| +.+..++..|+.+|+||+.. +.....+.+.|+++.|+.+|.++ ++..+..|+++
T Consensus 273 ~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~ 352 (528)
T 4b8j_A 273 DGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWT 352 (528)
T ss_dssp SSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHH
Confidence 877665 5778899999999999 77889999999999999984 45667788899999999999998 99999999999
Q ss_pred HHHHhcCChHhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHhhcc
Q 004761 674 LLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFRNQ 722 (732)
Q Consensus 674 L~~L~~~~~~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~~ 722 (732)
|.+++.+++.....+++.|+++.|+.++.++++.+++.|.++|.++...
T Consensus 353 L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~ 401 (528)
T 4b8j_A 353 ISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSG 401 (528)
T ss_dssp HHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcC
Confidence 9999998888888999999999999999999999999999999998654
|
| >4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.1e-23 Score=215.50 Aligned_cols=242 Identities=26% Similarity=0.314 Sum_probs=224.2
Q ss_pred CCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCc-hHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccC-chhHHH
Q 004761 487 GAIPPLLSLLYSEAQLTQEHAVTALLNLSINDE-NKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVL-EEYKAK 564 (732)
Q Consensus 487 G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~-~k~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~-~~~k~~ 564 (732)
|+++.|+.+|.++++.++..|+++|.+++.... ++..+.+.|+++.|+.+|++++.+++..|+++|.+++.. ++++..
T Consensus 2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 81 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKA 81 (252)
T ss_dssp CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHH
Confidence 679999999999999999999999999988764 888999999999999999999999999999999999987 788999
Q ss_pred HHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhc-cCchhHHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCChh-
Q 004761 565 IGRSGAVKALVDLLGSGTLRGRKDAATALFNLS-IFHENKARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGE- 641 (732)
Q Consensus 565 i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs-~~~~n~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~- 641 (732)
+...|+++.|+.+|+++++.++..|+.+|.||+ ..++++..+++.|+++.|++++ +.+..++..++++|++|+...+
T Consensus 82 ~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~ 161 (252)
T 4hxt_A 82 IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDE 161 (252)
T ss_dssp HHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHH
Confidence 999999999999999999999999999999999 5677888999999999999999 7788999999999999998554
Q ss_pred hHHHHHHcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHhhc
Q 004761 642 GRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFRN 721 (732)
Q Consensus 642 ~r~~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~ 721 (732)
.+..+.+.|+++.|+.++.++++..+..|+++|.+++.+++.....+.+.|+++.|+.+++++++.+++.|.++|.++..
T Consensus 162 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 241 (252)
T 4hxt_A 162 AIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKS 241 (252)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHc
Confidence 45788899999999999999999999999999999999888999999999999999999999999999999999999988
Q ss_pred cccCCcC
Q 004761 722 QREGSTG 728 (732)
Q Consensus 722 ~~~~~~~ 728 (732)
.......
T Consensus 242 ~~~~~~~ 248 (252)
T 4hxt_A 242 GGWLEHH 248 (252)
T ss_dssp TCBCCC-
T ss_pred CCCcccc
Confidence 7665543
|
| >4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} | Back alignment and structure |
|---|
Probab=99.93 E-value=1e-23 Score=215.62 Aligned_cols=237 Identities=29% Similarity=0.336 Sum_probs=220.5
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcC-CchHHHH
Q 004761 446 YVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSIN-DENKAMI 524 (732)
Q Consensus 446 ~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~-~~~k~~i 524 (732)
.++.|++.|.+++++.+..|++.|.+++..+++++..+.+.|+++.|+.+|.+++..++..|+++|.|++.+ +.++..+
T Consensus 3 ~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 82 (252)
T 4hxt_A 3 DVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAI 82 (252)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 589999999999999999999999999999988999999999999999999999999999999999999987 6788999
Q ss_pred HHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhc-cCchhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhccCch-h
Q 004761 525 AEAGAIEPLIHVLKSGNGGAKENSAAALFSLS-VLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFHE-N 602 (732)
Q Consensus 525 ~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls-~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~-n 602 (732)
.+.|+++.|+.+|++++++++..|+++|.+|+ ..++++..+...|+++.|+++|+++++.++..|+.+|.||+...+ +
T Consensus 83 ~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~ 162 (252)
T 4hxt_A 83 VDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEA 162 (252)
T ss_dssp HHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999999999999999999999 567888889999999999999999999999999999999998654 5
Q ss_pred HHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhC-ChhhHHHHHHcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhcC
Q 004761 603 KARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLST-VGEGRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCLH 680 (732)
Q Consensus 603 ~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~-~~~~r~~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~ 680 (732)
+..+++.|+++.|+.++ +++..++..|+.+|.+|+. .++.+..+.+.|+++.|++++.++++..++.|+++|.+|+..
T Consensus 163 ~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 242 (252)
T 4hxt_A 163 IKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSG 242 (252)
T ss_dssp HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcC
Confidence 57889999999999999 7788999999999999998 456678888999999999999999999999999999999985
Q ss_pred Ch
Q 004761 681 SP 682 (732)
Q Consensus 681 ~~ 682 (732)
.+
T Consensus 243 ~~ 244 (252)
T 4hxt_A 243 GW 244 (252)
T ss_dssp CB
T ss_pred CC
Confidence 43
|
| >3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B | Back alignment and structure |
|---|
Probab=99.93 E-value=1.9e-23 Score=239.10 Aligned_cols=281 Identities=21% Similarity=0.224 Sum_probs=250.2
Q ss_pred cccCchHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCC-----HHHHHHHHHHHHHhh
Q 004761 441 VTTTPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEA-----QLTQEHAVTALLNLS 515 (732)
Q Consensus 441 ~~~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~-----~~v~~~A~~~L~nLs 515 (732)
....|.|+.|+++|.+++.+++..|+++|.+++.+++++|..+.+.|++++|+.+|...+ ..++..++++|.|++
T Consensus 158 vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~ 237 (529)
T 3tpo_A 158 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLC 237 (529)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHH
Confidence 455788999999999999999999999999999999999999999999999999998653 457889999999999
Q ss_pred cCCchH-HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchh-HHHHHhcchHHHHHHhhcCCCHHHHHHHHHHH
Q 004761 516 INDENK-AMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEY-KAKIGRSGAVKALVDLLGSGTLRGRKDAATAL 593 (732)
Q Consensus 516 ~~~~~k-~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~-k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL 593 (732)
.+.... ......++++.|+.+|.+++++++..|+++|.+++..... ...+...|+++.|+.+|.+.+..++..|+.+|
T Consensus 238 ~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL 317 (529)
T 3tpo_A 238 RNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAI 317 (529)
T ss_dssp CCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHH
T ss_pred hcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHH
Confidence 875443 3334567899999999999999999999999999986654 55667779999999999999999999999999
Q ss_pred HHhccCc-hhHHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCCh-hhHHHHHHcCcHHHHHHHHhcCCHHHHHHH
Q 004761 594 FNLSIFH-ENKARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVG-EGRLAIAREGGIPSLVEVVESGSQRGKENA 670 (732)
Q Consensus 594 ~nLs~~~-~n~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~-~~r~~i~~~~~I~~Lv~lL~~~s~~~~e~A 670 (732)
.||+... .++..+++.|+++.|+.+| +++..++..|+++|.||+.+. ..+..+.+.|+++.|+.++.+++..++..|
T Consensus 318 ~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A 397 (529)
T 3tpo_A 318 GNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAA 397 (529)
T ss_dssp HHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHH
T ss_pred HHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHH
Confidence 9998865 4667889999999999999 888899999999999998754 566788899999999999999999999999
Q ss_pred HHHHHHHhcC-ChHhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHhhc
Q 004761 671 ASILLQLCLH-SPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFRN 721 (732)
Q Consensus 671 ~~~L~~L~~~-~~~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~ 721 (732)
+++|.+++.+ +++.+..+++.|+++.|+.++.+.++++...+..+|.++-.
T Consensus 398 ~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~ 449 (529)
T 3tpo_A 398 AWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQ 449 (529)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 9999999874 67888899999999999999999999999999998888754
|
| >3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... | Back alignment and structure |
|---|
Probab=99.92 E-value=2.9e-23 Score=236.49 Aligned_cols=281 Identities=21% Similarity=0.227 Sum_probs=248.9
Q ss_pred cccCchHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCC-----HHHHHHHHHHHHHhh
Q 004761 441 VTTTPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEA-----QLTQEHAVTALLNLS 515 (732)
Q Consensus 441 ~~~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~-----~~v~~~A~~~L~nLs 515 (732)
..+.+.|+.|++.|++++.+++..|+++|.+++.+++++|..+.+.|+++.|+.+|.+.+ ..++..++++|.|++
T Consensus 139 vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~ 218 (510)
T 3ul1_B 139 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLC 218 (510)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHh
Confidence 455788999999999999999999999999999999999999999999999999998654 457889999999999
Q ss_pred cCCchH-HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchh-HHHHHhcchHHHHHHhhcCCCHHHHHHHHHHH
Q 004761 516 INDENK-AMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEY-KAKIGRSGAVKALVDLLGSGTLRGRKDAATAL 593 (732)
Q Consensus 516 ~~~~~k-~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~-k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL 593 (732)
.+.... ......++++.|+.+|.+++.+++..|+++|.+|+..... ...+...|+++.|+.+|.+.+..++..|+.+|
T Consensus 219 ~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL 298 (510)
T 3ul1_B 219 RNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAI 298 (510)
T ss_dssp CCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHH
T ss_pred hcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHH
Confidence 875443 3333467899999999999999999999999999986655 45566779999999999999999999999999
Q ss_pred HHhccCc-hhHHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCC-hhhHHHHHHcCcHHHHHHHHhcCCHHHHHHH
Q 004761 594 FNLSIFH-ENKARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTV-GEGRLAIAREGGIPSLVEVVESGSQRGKENA 670 (732)
Q Consensus 594 ~nLs~~~-~n~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~-~~~r~~i~~~~~I~~Lv~lL~~~s~~~~e~A 670 (732)
.||+... .++..+++.|+++.|+.+| +++..++..|+++|.||+.+ ++.+..+.+.|+++.|+.++.+++..++..|
T Consensus 299 ~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A 378 (510)
T 3ul1_B 299 GNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEA 378 (510)
T ss_dssp HHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHH
T ss_pred HHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHH
Confidence 9998865 4667889999999999999 78889999999999999875 4567788899999999999999999999999
Q ss_pred HHHHHHHhcC-ChHhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHhhc
Q 004761 671 ASILLQLCLH-SPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFRN 721 (732)
Q Consensus 671 ~~~L~~L~~~-~~~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~ 721 (732)
+++|.+++.+ +++.+..+++.|+++.|+.++.+.++++...+..+|.++-.
T Consensus 379 a~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~ 430 (510)
T 3ul1_B 379 AWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQ 430 (510)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 9999999884 67788889999999999999999999999999998887744
|
| >4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A | Back alignment and structure |
|---|
Probab=99.92 E-value=3.6e-23 Score=236.35 Aligned_cols=278 Identities=20% Similarity=0.194 Sum_probs=251.0
Q ss_pred CchHHHHHHHhcCCCHHHHHHHHHHHHHHhccCh-hhHHHHHhcCCHHHHHHhhccCC-HHHHHHHHHHHHHhhcC-Cch
Q 004761 444 TPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNM-ENRMIIGNCGAIPPLLSLLYSEA-QLTQEHAVTALLNLSIN-DEN 520 (732)
Q Consensus 444 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~-~~r~~i~~~G~I~~Lv~lL~s~~-~~v~~~A~~~L~nLs~~-~~~ 520 (732)
...++.|++.|.+++++.+..|+..|+.++.... .....+.+.|+++.|+.+|.+++ +.++..|+++|.|++.+ +.+
T Consensus 73 ~~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~ 152 (528)
T 4b8j_A 73 LESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSEN 152 (528)
T ss_dssp --CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHH
Confidence 3458999999999999999999999999976554 66788889999999999999876 99999999999999986 567
Q ss_pred HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccC-chhHHHHHhcchHHHHHHhh-cCCCHHHHHHHHHHHHHhcc
Q 004761 521 KAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVL-EEYKAKIGRSGAVKALVDLL-GSGTLRGRKDAATALFNLSI 598 (732)
Q Consensus 521 k~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~-~~~k~~i~~~g~i~~Lv~lL-~~~~~~~~~~Al~aL~nLs~ 598 (732)
+..+.+.|+++.|+.+|.+++++++..|+++|.+|+.. +.++..+...|+++.|+.+| .+.++.++..|+++|.+|+.
T Consensus 153 ~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~ 232 (528)
T 4b8j_A 153 TKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCR 232 (528)
T ss_dssp HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHc
Confidence 88889999999999999999999999999999999975 45688888889999999999 56789999999999999999
Q ss_pred CchhHHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCChhhH-HHHHHcCcHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004761 599 FHENKARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGEGR-LAIAREGGIPSLVEVVESGSQRGKENAASILLQ 676 (732)
Q Consensus 599 ~~~n~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~~r-~~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L~~ 676 (732)
..++....+..|+++.|+.+| +.+..+...++++|.+|+.....+ ..+.+.|+++.|+.+|.++++..++.|+++|.+
T Consensus 233 ~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~n 312 (528)
T 4b8j_A 233 GKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGN 312 (528)
T ss_dssp SSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHH
Confidence 866555666799999999999 788999999999999999877655 577889999999999999999999999999999
Q ss_pred HhcCChHhHHHHHhCCCHHHHHHchhcC-ChHHHHHHHHHHHHhhc
Q 004761 677 LCLHSPKFCTLVLQEGAVPPLVGLSQSG-TPRAKEKAQQLLSHFRN 721 (732)
Q Consensus 677 L~~~~~~~~~~v~~~G~i~~L~~Ll~~g-~~~~k~kA~~lL~~l~~ 721 (732)
++.+++.....+++.|+++.|+.++.++ ++.+++.|.++|.++..
T Consensus 313 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~ 358 (528)
T 4b8j_A 313 IVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITA 358 (528)
T ss_dssp HTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHC
Confidence 9998888889999999999999999999 89999999999999975
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} | Back alignment and structure |
|---|
Probab=99.92 E-value=9.3e-24 Score=216.94 Aligned_cols=235 Identities=25% Similarity=0.315 Sum_probs=215.8
Q ss_pred chHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhc-CCchHHH
Q 004761 445 PYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSI-NDENKAM 523 (732)
Q Consensus 445 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~-~~~~k~~ 523 (732)
...+.+++.|.+++++++..|++.|+.+...+.+++..+.+.|+++.|+.+|.++++.++..|+++|.|++. ++.++..
T Consensus 12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 91 (252)
T 4db8_A 12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 91 (252)
T ss_dssp CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 347899999999999999999999977666577889999999999999999999999999999999999998 4678899
Q ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhH-HHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhccCc-h
Q 004761 524 IAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYK-AKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFH-E 601 (732)
Q Consensus 524 i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k-~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~-~ 601 (732)
+.+.|+++.|+.+|++++++++..|+++|.+|+..+.++ ..+...|+++.|+.+|+++++.++..|+.+|.||+... +
T Consensus 92 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~ 171 (252)
T 4db8_A 92 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 171 (252)
T ss_dssp HHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChH
Confidence 999999999999999999999999999999999988888 78888899999999999999999999999999999855 5
Q ss_pred hHHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhC-ChhhHHHHHHcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Q 004761 602 NKARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLST-VGEGRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCL 679 (732)
Q Consensus 602 n~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~-~~~~r~~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~ 679 (732)
++..+++.|+++.|+++| +++..++..|+.+|.+|+. .++.+..+.+.|+++.|++++.++++..++.|+++|.+|+.
T Consensus 172 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 172 QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 251 (252)
T ss_dssp HHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred HHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence 667888999999999999 7788999999999999985 55677888999999999999999999999999999999986
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A | Back alignment and structure |
|---|
Probab=99.92 E-value=6.2e-23 Score=234.65 Aligned_cols=282 Identities=22% Similarity=0.225 Sum_probs=254.8
Q ss_pred cccCchHHHHHHHhcCC-CHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcC-C
Q 004761 441 VTTTPYVKKLIEDLNST-SNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSIN-D 518 (732)
Q Consensus 441 ~~~~~~i~~Lv~~L~s~-~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~-~ 518 (732)
....+.++.|++.|.++ ++.++..|++.|.+++..+++++..+.+.|+++.|+.+|.++++.+++.|+++|.||+.+ +
T Consensus 126 ~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~ 205 (530)
T 1wa5_B 126 VIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDST 205 (530)
T ss_dssp HHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCc
Confidence 34467899999999987 899999999999999998888999999999999999999999999999999999999987 4
Q ss_pred chHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCc-hhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 004761 519 ENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLE-EYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLS 597 (732)
Q Consensus 519 ~~k~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~-~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs 597 (732)
.++..+...|++++|+.+|.+.+.+++..|+++|.+|+... .........++++.|+.+|.++++.++..|+++|.+|+
T Consensus 206 ~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~ 285 (530)
T 1wa5_B 206 DYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLS 285 (530)
T ss_dssp HHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHH
T ss_pred cchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 67888889999999999999988999999999999999764 44445556799999999999999999999999999999
Q ss_pred cCc-hhHHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCC-hhhHHHHHHcCcHHHHHHHHhcCCHHHHHHHHHHH
Q 004761 598 IFH-ENKARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTV-GEGRLAIAREGGIPSLVEVVESGSQRGKENAASIL 674 (732)
Q Consensus 598 ~~~-~n~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~-~~~r~~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L 674 (732)
... +....+++.|+++.|+.+| +.+..++..|+.+|.+|+.. +.....+.+.|+++.|+.+|.++++..+..|+++|
T Consensus 286 ~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL 365 (530)
T 1wa5_B 286 DGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTI 365 (530)
T ss_dssp SSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHH
Confidence 865 4567788899999999999 78889999999999999975 44567778889999999999999999999999999
Q ss_pred HHHhcCChHhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHhhcc
Q 004761 675 LQLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFRNQ 722 (732)
Q Consensus 675 ~~L~~~~~~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~~ 722 (732)
.+++.++++....+++.|+++.|+.++.++++.++..|.++|.++...
T Consensus 366 ~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~ 413 (530)
T 1wa5_B 366 SNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSG 413 (530)
T ss_dssp HHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Confidence 999998888888899999999999999999999999999999998654
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} | Back alignment and structure |
|---|
Probab=99.91 E-value=5.3e-23 Score=211.23 Aligned_cols=235 Identities=25% Similarity=0.312 Sum_probs=217.7
Q ss_pred CCHHHHHHhhccCCHHHHHHHHHHHHHh-hcCCchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhcc-CchhHHH
Q 004761 487 GAIPPLLSLLYSEAQLTQEHAVTALLNL-SINDENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSV-LEEYKAK 564 (732)
Q Consensus 487 G~I~~Lv~lL~s~~~~v~~~A~~~L~nL-s~~~~~k~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~-~~~~k~~ 564 (732)
...+.++..|++++++++..|+++|.++ +.++.++..+.+.|+++.|+.+|++++++++..|+++|.+++. .++++..
T Consensus 12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 91 (252)
T 4db8_A 12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 91 (252)
T ss_dssp CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 5688999999999999999999999775 4456678889999999999999999999999999999999998 6788999
Q ss_pred HHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhccCchhH-HHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCCh-h
Q 004761 565 IGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFHENK-ARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVG-E 641 (732)
Q Consensus 565 i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~n~-~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~-~ 641 (732)
+...|+++.|+.+|+++++.+++.|+.+|.||+..++++ ..+++.|+++.|+++| +++..++..|+++|.+|+... +
T Consensus 92 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~ 171 (252)
T 4db8_A 92 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 171 (252)
T ss_dssp HHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChH
Confidence 999999999999999999999999999999999999988 8899999999999999 778899999999999999854 5
Q ss_pred hHHHHHHcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHhhc
Q 004761 642 GRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFRN 721 (732)
Q Consensus 642 ~r~~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~ 721 (732)
.+..+.+.|+++.|++++.++++..++.|+++|.+++.+++.....+.+.|+++.|+.+++++++.+++.|.++|.++..
T Consensus 172 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 172 QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 251 (252)
T ss_dssp HHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred HHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence 66778889999999999999999999999999999999889999999999999999999999999999999999998854
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A | Back alignment and structure |
|---|
Probab=99.91 E-value=3.2e-22 Score=228.73 Aligned_cols=278 Identities=20% Similarity=0.199 Sum_probs=250.5
Q ss_pred CchHHHHHHHhcCCCHHHHHHHHHHHHHHhccC-hhhHHHHHhcCCHHHHHHhhccC-CHHHHHHHHHHHHHhhcCC-ch
Q 004761 444 TPYVKKLIEDLNSTSNEIQASAAAELRLLAKHN-MENRMIIGNCGAIPPLLSLLYSE-AQLTQEHAVTALLNLSIND-EN 520 (732)
Q Consensus 444 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~-~~~r~~i~~~G~I~~Lv~lL~s~-~~~v~~~A~~~L~nLs~~~-~~ 520 (732)
...++.|++.|.+++++.+..|+..|+.+.... ..++..+.+.|+++.|+.+|.++ ++.++..|+++|.+++... .+
T Consensus 86 ~~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~ 165 (530)
T 1wa5_B 86 QQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQ 165 (530)
T ss_dssp -CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHH
Confidence 456899999999999999999999999986542 35567788899999999999987 8999999999999999864 56
Q ss_pred HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccC-chhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhccC
Q 004761 521 KAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVL-EEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIF 599 (732)
Q Consensus 521 k~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~-~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~ 599 (732)
+..+...|+++.|+.+|.+++++++..|+++|.+|+.. +.++..+...|+++.|+.+|.+.++.++..|+++|.+|+.+
T Consensus 166 ~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~ 245 (530)
T 1wa5_B 166 TKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRG 245 (530)
T ss_dssp HHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCC
Confidence 77888999999999999999999999999999999986 46788888889999999999998999999999999999987
Q ss_pred c-hhHHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCCh-hhHHHHHHcCcHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004761 600 H-ENKARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVG-EGRLAIAREGGIPSLVEVVESGSQRGKENAASILLQ 676 (732)
Q Consensus 600 ~-~n~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~-~~r~~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L~~ 676 (732)
. ++.......|+++.|+.+| +.+..+...++++|.+|+... +....+.+.|+++.|+.++.++++..++.|+++|.+
T Consensus 246 ~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~ 325 (530)
T 1wa5_B 246 KKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGN 325 (530)
T ss_dssp SSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHH
Confidence 6 5556667789999999999 778899999999999999764 567778889999999999999999999999999999
Q ss_pred HhcCChHhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHhhc
Q 004761 677 LCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFRN 721 (732)
Q Consensus 677 L~~~~~~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~ 721 (732)
++.+++.....+++.|+++.|+.+++++++.+++.|.++|.++..
T Consensus 326 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~ 370 (530)
T 1wa5_B 326 IVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITA 370 (530)
T ss_dssp HTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 999888888889999999999999999999999999999999875
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A | Back alignment and structure |
|---|
Probab=99.91 E-value=6.2e-22 Score=220.34 Aligned_cols=279 Identities=20% Similarity=0.212 Sum_probs=248.7
Q ss_pred cCchHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcc-CCHHHHHHHHHHHHHhhcCC--c
Q 004761 443 TTPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYS-EAQLTQEHAVTALLNLSIND--E 519 (732)
Q Consensus 443 ~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s-~~~~v~~~A~~~L~nLs~~~--~ 519 (732)
..+.++.|++.|++++++++..|++.|.+++..++.++..+.+.|+++.|+.++.+ .+..++..|+++|.|++.+. .
T Consensus 105 ~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~ 184 (450)
T 2jdq_A 105 QAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPP 184 (450)
T ss_dssp HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSC
T ss_pred hCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCC
Confidence 35789999999999999999999999999999988899999999999999999995 68999999999999999763 2
Q ss_pred hHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCc-hhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhcc
Q 004761 520 NKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLE-EYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSI 598 (732)
Q Consensus 520 ~k~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~-~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~ 598 (732)
.+..+. .++++.|+.+|.+++.+++..++++|.+|+... +.+..+...|+++.|+.+|.+.++.++..|+.+|.+|+.
T Consensus 185 ~~~~~~-~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 263 (450)
T 2jdq_A 185 PEFAKV-SPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVT 263 (450)
T ss_dssp CCGGGT-GGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred CCHHHH-HHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhh
Confidence 333333 789999999999999999999999999999854 566677778999999999999999999999999999998
Q ss_pred Cchh-HHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhC-ChhhHHHHHHcCcHHHHHHHHhcCCHHHHHHHHHHHH
Q 004761 599 FHEN-KARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLST-VGEGRLAIAREGGIPSLVEVVESGSQRGKENAASILL 675 (732)
Q Consensus 599 ~~~n-~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~-~~~~r~~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L~ 675 (732)
..+. ...+++.|+++.|+.+| +++..++..|+++|.+++. .++....+.+.++++.|+.++.++++.++..|+++|.
T Consensus 264 ~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~ 343 (450)
T 2jdq_A 264 GDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAIT 343 (450)
T ss_dssp SCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred CChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 7654 45678899999999999 7788999999999999996 5566778888899999999999999999999999999
Q ss_pred HHhcC-ChHhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHhhcc
Q 004761 676 QLCLH-SPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFRNQ 722 (732)
Q Consensus 676 ~L~~~-~~~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~~ 722 (732)
+++.+ +++....+++.|+++.|+.++.++++++++.|..+|..+...
T Consensus 344 ~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 391 (450)
T 2jdq_A 344 NATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRL 391 (450)
T ss_dssp HHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 99985 677888888999999999999999999999999999888653
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A | Back alignment and structure |
|---|
Probab=99.91 E-value=3.9e-22 Score=221.97 Aligned_cols=276 Identities=22% Similarity=0.219 Sum_probs=248.2
Q ss_pred chHHHHHHHhcCC-CHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCC-chHH
Q 004761 445 PYVKKLIEDLNST-SNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSIND-ENKA 522 (732)
Q Consensus 445 ~~i~~Lv~~L~s~-~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~-~~k~ 522 (732)
+.++.|++.|+++ +++++..|++.|.+++..+++++..+.+.|+++.|+.+|.++++.+++.|+++|.|++.+. .++.
T Consensus 64 ~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~ 143 (450)
T 2jdq_A 64 GVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRD 143 (450)
T ss_dssp THHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHH
Confidence 7899999999988 8999999999999999988888888889999999999999999999999999999999875 5788
Q ss_pred HHHHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHhccCc--hhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhccC
Q 004761 523 MIAEAGAIEPLIHVLKS-GNGGAKENSAAALFSLSVLE--EYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIF 599 (732)
Q Consensus 523 ~i~~~g~l~~Lv~lL~~-~~~e~~~~Aa~~L~~Ls~~~--~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~ 599 (732)
.+.+.|+++.|+.+|.+ .+.+++..|+++|.+++... ..+..+ ..++++.|+.++.++++.++..|+++|.+|+..
T Consensus 144 ~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~ 222 (450)
T 2jdq_A 144 YVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAK-VSPCLNVLSWLLFVSDTDVLADACWALSYLSDG 222 (450)
T ss_dssp HHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGG-TGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSS
T ss_pred HHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHH-HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCC
Confidence 88899999999999996 67999999999999999653 222222 268999999999999999999999999999986
Q ss_pred c-hhHHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCChh-hHHHHHHcCcHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004761 600 H-ENKARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGE-GRLAIAREGGIPSLVEVVESGSQRGKENAASILLQ 676 (732)
Q Consensus 600 ~-~n~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~-~r~~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L~~ 676 (732)
. +++..++..|+++.|+.+| +.+..++..|+.+|.+|+...+ ....+.+.|+++.|+.++.++++..+..|+++|.+
T Consensus 223 ~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~ 302 (450)
T 2jdq_A 223 PNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISN 302 (450)
T ss_dssp SHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 4 5677888899999999999 7788999999999999998655 45567788999999999999999999999999999
Q ss_pred HhcCChHhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHhhc
Q 004761 677 LCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFRN 721 (732)
Q Consensus 677 L~~~~~~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~ 721 (732)
++.+++.....+++.|+++.|+.++.++++++++.|.++|.++..
T Consensus 303 l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~ 347 (450)
T 2jdq_A 303 ITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATS 347 (450)
T ss_dssp HTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHc
Confidence 999888888889999999999999999999999999999999864
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A | Back alignment and structure |
|---|
Probab=99.89 E-value=1.2e-21 Score=222.92 Aligned_cols=278 Identities=23% Similarity=0.235 Sum_probs=239.4
Q ss_pred CchHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhc-CCHHHHHHhhccC-CHHHHHHHHHHHHHhhcCCchH
Q 004761 444 TPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNC-GAIPPLLSLLYSE-AQLTQEHAVTALLNLSINDENK 521 (732)
Q Consensus 444 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~-G~I~~Lv~lL~s~-~~~v~~~A~~~L~nLs~~~~~k 521 (732)
.+.++.|+++|+++++.++..|+..|.+++... .++..+... |+++.|+.+|.++ ++.++..|+.+|.+|+.+++++
T Consensus 16 ~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~-~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~ 94 (529)
T 1jdh_A 16 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKE-ASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGL 94 (529)
T ss_dssp -CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSH-HHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHH
T ss_pred HhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCC-ccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhH
Confidence 667999999999999999999999999999765 577666654 8999999999754 8999999999999999988899
Q ss_pred HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccC-chhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhccC-
Q 004761 522 AMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVL-EEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIF- 599 (732)
Q Consensus 522 ~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~-~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~- 599 (732)
..+.+.|+++.|+.+|++++++++..|+++|.+|+.. ++.+..+...|+++.|+.+|++++.+.+..++.+|.+|+..
T Consensus 95 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~ 174 (529)
T 1jdh_A 95 LAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGN 174 (529)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999986 46677888889999999999999999999999999999874
Q ss_pred chhHHHHHhhchHHHHHHhc--CCChHHHHHHHHHHHHHhCChhhHHHHHHcCcHHHHH---------------------
Q 004761 600 HENKARIIQAGAVKHLVDLM--DPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLV--------------------- 656 (732)
Q Consensus 600 ~~n~~~lv~~G~V~~Ll~lL--~~~~~l~e~al~iL~nLa~~~~~r~~i~~~~~I~~Lv--------------------- 656 (732)
++++..+++.|+++.|+.+| .........++.+|.+|+.+++.+..+.+.|+++.|+
T Consensus 175 ~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l 254 (529)
T 1jdh_A 175 QESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL 254 (529)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHH
Confidence 57888888889999999988 4455667778888888888888888777777665555
Q ss_pred ------------------HHHhcCCHHHHHHHHHHHHHHhcCChHhHHHHHhCCCHHHHHHchhcC--ChHHHHHHHHHH
Q 004761 657 ------------------EVVESGSQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSG--TPRAKEKAQQLL 716 (732)
Q Consensus 657 ------------------~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~v~~~G~i~~L~~Ll~~g--~~~~k~kA~~lL 716 (732)
+++.+.++..++.|+++|.+|+.++++.+..+.+.|+++.|+.++.+. .+.++..|..+|
T Consensus 255 ~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L 334 (529)
T 1jdh_A 255 SDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL 334 (529)
T ss_dssp HTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHH
Confidence 444556777888899999999888888899999999999999999863 378999999999
Q ss_pred HHhhcc
Q 004761 717 SHFRNQ 722 (732)
Q Consensus 717 ~~l~~~ 722 (732)
.++...
T Consensus 335 ~nl~~~ 340 (529)
T 1jdh_A 335 RHLTSR 340 (529)
T ss_dssp HHHTSS
T ss_pred HHHHcC
Confidence 998653
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.7e-21 Score=228.26 Aligned_cols=278 Identities=23% Similarity=0.226 Sum_probs=245.1
Q ss_pred cCchHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhc-CCHHHHHHhhccC-CHHHHHHHHHHHHHhhcCCch
Q 004761 443 TTPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNC-GAIPPLLSLLYSE-AQLTQEHAVTALLNLSINDEN 520 (732)
Q Consensus 443 ~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~-G~I~~Lv~lL~s~-~~~v~~~A~~~L~nLs~~~~~ 520 (732)
..+.++.|+++|+++++.++..|+..|.+++... .++..+... |+++.|+.+|.+. ++.++..|+.+|.+|+.++++
T Consensus 12 ~~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~-~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~ 90 (644)
T 2z6h_A 12 ATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKE-ASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREG 90 (644)
T ss_dssp CTTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTST-THHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHH
T ss_pred hhchHHHHHHHHcCCCHHHHHHHHHHHHHHHCCC-hhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhh
Confidence 3567999999999999999999999999999876 467666654 8999999999865 899999999999999999889
Q ss_pred HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccC-chhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhcc-
Q 004761 521 KAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVL-EEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSI- 598 (732)
Q Consensus 521 k~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~-~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~- 598 (732)
+..+.+.|+++.|+.+|+++++.++..|+++|.+|+.. +..+..+...|+++.|+.+|++++++.+..++.+|.+|+.
T Consensus 91 ~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~ 170 (644)
T 2z6h_A 91 LLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYG 170 (644)
T ss_dssp HHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999975 4667778888999999999999999988999999999997
Q ss_pred CchhHHHHHhhchHHHHHHhc--CCChHHHHHHHHHHHHHhCChhhHHHHHHcCcHHHHHHH------------------
Q 004761 599 FHENKARIIQAGAVKHLVDLM--DPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEV------------------ 658 (732)
Q Consensus 599 ~~~n~~~lv~~G~V~~Ll~lL--~~~~~l~e~al~iL~nLa~~~~~r~~i~~~~~I~~Lv~l------------------ 658 (732)
+++++..+++.|+++.|+.+| .......+.++.+|.+|+.+++.+..+.+.|+++.|+.+
T Consensus 171 ~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~n 250 (644)
T 2z6h_A 171 NQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRN 250 (644)
T ss_dssp CHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 678999999999999999999 345677889999999999999999999888877766554
Q ss_pred ---------------------HhcCCHHHHHHHHHHHHHHhcCChHhHHHHHhCCCHHHHHHchhcC-C-hHHHHHHHHH
Q 004761 659 ---------------------VESGSQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSG-T-PRAKEKAQQL 715 (732)
Q Consensus 659 ---------------------L~~~s~~~~e~A~~~L~~L~~~~~~~~~~v~~~G~i~~L~~Ll~~g-~-~~~k~kA~~l 715 (732)
+.+.++.+++.|+++|.+|+.++++.+..+.+.|+++.|+.++.+. + +.++..|..+
T Consensus 251 L~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~a 330 (644)
T 2z6h_A 251 LSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICA 330 (644)
T ss_dssp HGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHH
Confidence 4456677888888888888888788889999999999999999873 3 7999999999
Q ss_pred HHHhhc
Q 004761 716 LSHFRN 721 (732)
Q Consensus 716 L~~l~~ 721 (732)
|.+|..
T Consensus 331 L~nL~~ 336 (644)
T 2z6h_A 331 LRHLTS 336 (644)
T ss_dssp HHHHTS
T ss_pred HHHHhc
Confidence 999964
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A | Back alignment and structure |
|---|
Probab=99.88 E-value=6.3e-21 Score=216.91 Aligned_cols=280 Identities=20% Similarity=0.206 Sum_probs=248.4
Q ss_pred cccCchHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcC-Cc
Q 004761 441 VTTTPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSIN-DE 519 (732)
Q Consensus 441 ~~~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~-~~ 519 (732)
....+.++.|++.|++++++.+..|+..|.+++..++.++..+.+.|+++.|+.+|.+++..++..++.+|.|++.. ++
T Consensus 97 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~ 176 (529)
T 1jdh_A 97 IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQE 176 (529)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHH
Confidence 34467899999999999999999999999999998778899999999999999999999999999999999999975 67
Q ss_pred hHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhcc
Q 004761 520 NKAMIAEAGAIEPLIHVLKSGN-GGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSI 598 (732)
Q Consensus 520 ~k~~i~~~g~l~~Lv~lL~~~~-~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~ 598 (732)
++..+.+.|+++.|+.+|++++ ...+..++.+|.+|+..++++..+...|+++.|+.++.++++..++.++++|.||+.
T Consensus 177 ~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~ 256 (529)
T 1jdh_A 177 SKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSD 256 (529)
T ss_dssp HHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhc
Confidence 8889999999999999998876 456677899999999999999999999999999999999999999999999999998
Q ss_pred CchhHHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCCh-hhHHHHHHcCcHHHHHHHHhc--CCHHHHHHHHHHH
Q 004761 599 FHENKARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVG-EGRLAIAREGGIPSLVEVVES--GSQRGKENAASIL 674 (732)
Q Consensus 599 ~~~n~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~-~~r~~i~~~~~I~~Lv~lL~~--~s~~~~e~A~~~L 674 (732)
...... ...|+++.|++++ +.+..++..|+++|.+|+... +.+..+.+.|+++.|++++.+ .++..++.|+.+|
T Consensus 257 ~~~~~~--~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L 334 (529)
T 1jdh_A 257 AATKQE--GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL 334 (529)
T ss_dssp TCTTCS--CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CChhhH--HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHH
Confidence 754322 2358999999999 788999999999999998864 588999999999999999975 3478999999999
Q ss_pred HHHhcCChH---hHHHHHhCCCHHHHHHchhcCC-hHHHHHHHHHHHHhhcc
Q 004761 675 LQLCLHSPK---FCTLVLQEGAVPPLVGLSQSGT-PRAKEKAQQLLSHFRNQ 722 (732)
Q Consensus 675 ~~L~~~~~~---~~~~v~~~G~i~~L~~Ll~~g~-~~~k~kA~~lL~~l~~~ 722 (732)
.+|+.++++ .+..+.+.|+++.|+.+++++. +.+++.|.++|.++...
T Consensus 335 ~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~ 386 (529)
T 1jdh_A 335 RHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC 386 (529)
T ss_dssp HHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTS
T ss_pred HHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcC
Confidence 999986543 5678889999999999999987 58999999999998753
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=1e-21 Score=198.98 Aligned_cols=195 Identities=22% Similarity=0.233 Sum_probs=175.3
Q ss_pred CchHHHHHHHhcCCCH--HHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcC-Cch
Q 004761 444 TPYVKKLIEDLNSTSN--EIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSIN-DEN 520 (732)
Q Consensus 444 ~~~i~~Lv~~L~s~~~--~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~-~~~ 520 (732)
...++.+|++|.++++ +.+..|+..|++++..++.+|..+.+.|+||+|+.+|+++++.+++.|+++|.||+.+ ++|
T Consensus 7 ~~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~n 86 (233)
T 3tt9_A 7 EMTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDN 86 (233)
T ss_dssp CCCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred hccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHH
Confidence 4568999999999987 8888999999999999999999999999999999999999999999999999999985 789
Q ss_pred HHHHHHcCCHHHHHHHHc-CCCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhc----------------CCCH
Q 004761 521 KAMIAEAGAIEPLIHVLK-SGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLG----------------SGTL 583 (732)
Q Consensus 521 k~~i~~~g~l~~Lv~lL~-~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~----------------~~~~ 583 (732)
+..+++.|++++|+.+|. .++.+++++|+++|++|+..+.+|..|++ +++++|++++. ..++
T Consensus 87 k~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~-~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~ 165 (233)
T 3tt9_A 87 KLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMIT-EALLTLTENIIIPFSGWPEGDYPKANGLLDF 165 (233)
T ss_dssp HHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHH-HHHHHHCCCCCHHHHCCCGGGCCCCCTTCCH
T ss_pred HHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHh-ccHHHHHHHHhccccCCcccccccccccchH
Confidence 999999999999999998 57899999999999999999999999987 47999998763 1257
Q ss_pred HHHHHHHHHHHHhccC-chhHHHHHhh-chHHHHHHhc-C------CChHHHHHHHHHHHHHhCC
Q 004761 584 RGRKDAATALFNLSIF-HENKARIIQA-GAVKHLVDLM-D------PSTGMVDKAVALLANLSTV 639 (732)
Q Consensus 584 ~~~~~Al~aL~nLs~~-~~n~~~lv~~-G~V~~Ll~lL-~------~~~~l~e~al~iL~nLa~~ 639 (732)
.+++.|..+|+||+.. +++|..|.+. |+|+.|+.++ . .+...+|.|+.+|.||+..
T Consensus 166 ~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 166 DIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 8999999999999985 4899999985 7899999999 1 2557899999999999864
|
| >3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.87 E-value=3.2e-21 Score=222.53 Aligned_cols=286 Identities=13% Similarity=0.110 Sum_probs=240.7
Q ss_pred ccCchHHHHHHHhcC-CCHHHHHHHHHHHHHHhccCh-------------------------------------h-hHHH
Q 004761 442 TTTPYVKKLIEDLNS-TSNEIQASAAAELRLLAKHNM-------------------------------------E-NRMI 482 (732)
Q Consensus 442 ~~~~~i~~Lv~~L~s-~~~~~~~~Al~~L~~La~~~~-------------------------------------~-~r~~ 482 (732)
.+.+.++.|++.++. .+......++..|.+++...+ + ++..
T Consensus 373 ~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~ 452 (778)
T 3opb_A 373 SNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKY 452 (778)
T ss_dssp HCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHH
Confidence 345668899999985 566778889999998875322 1 5678
Q ss_pred HHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHHHcCCCHH---HHHHHHHHHHHhccCc
Q 004761 483 IGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAMIAEAGAIEPLIHVLKSGNGG---AKENSAAALFSLSVLE 559 (732)
Q Consensus 483 i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k~~i~~~g~l~~Lv~lL~~~~~e---~~~~Aa~~L~~Ls~~~ 559 (732)
+.++|+||.|+.++++.++.+++.|+++|.||+.++++|..+++.|++++|+.+|.+++.. .+.+|+.+|.+|+...
T Consensus 453 l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~ 532 (778)
T 3opb_A 453 ILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFT 532 (778)
T ss_dssp TTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTS
T ss_pred HHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcC
Confidence 8899999999999999999999999999999999999999999999999999999988654 8999999999999766
Q ss_pred hhHHHHHh---cchHHHHHHhhcC--CCH------------HHHHHHHHHHHHhccCch-----hHHHHHhh-chHHHHH
Q 004761 560 EYKAKIGR---SGAVKALVDLLGS--GTL------------RGRKDAATALFNLSIFHE-----NKARIIQA-GAVKHLV 616 (732)
Q Consensus 560 ~~k~~i~~---~g~i~~Lv~lL~~--~~~------------~~~~~Al~aL~nLs~~~~-----n~~~lv~~-G~V~~Ll 616 (732)
+....+.. .|+|++|+.+|.. +.. ..+..|+.||.||+..++ .+.++++. |+++.|.
T Consensus 533 np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~ 612 (778)
T 3opb_A 533 NPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIE 612 (778)
T ss_dssp CHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHH
T ss_pred CHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHH
Confidence 66555532 3999999999983 211 237799999999999873 47888985 9999999
Q ss_pred Hhc-CCChHHHHHHHHHHHHHhCChhhH-HHHHHc------CcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHhHHHH
Q 004761 617 DLM-DPSTGMVDKAVALLANLSTVGEGR-LAIARE------GGIPSLVEVVESGSQRGKENAASILLQLCLHSPKFCTLV 688 (732)
Q Consensus 617 ~lL-~~~~~l~e~al~iL~nLa~~~~~r-~~i~~~------~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~v 688 (732)
++| +.+..++..|+.+++||+.+++++ ..+.+. +.++.|+.+++.++.+.+..|+++|.+++..++..+..+
T Consensus 613 ~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~l 692 (778)
T 3opb_A 613 NLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKEL 692 (778)
T ss_dssp HGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 999 888899999999999999999875 355332 248899999999999999999999999987788888888
Q ss_pred HhC-CCHHHHHHchhc--CChHHHHHHHHHHHHhhccccCCc
Q 004761 689 LQE-GAVPPLVGLSQS--GTPRAKEKAQQLLSHFRNQREGST 727 (732)
Q Consensus 689 ~~~-G~i~~L~~Ll~~--g~~~~k~kA~~lL~~l~~~~~~~~ 727 (732)
++. ++++.|+.+++. +++.++..+..++.+|.+..+++.
T Consensus 693 l~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~~~~~~ 734 (778)
T 3opb_A 693 LTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEVIPDNG 734 (778)
T ss_dssp TTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTCCSTT
T ss_pred HHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhhccCC
Confidence 887 799999999999 789999999999999998655443
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.8e-20 Score=217.87 Aligned_cols=280 Identities=21% Similarity=0.204 Sum_probs=247.5
Q ss_pred cccCchHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhc-CCc
Q 004761 441 VTTTPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSI-NDE 519 (732)
Q Consensus 441 ~~~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~-~~~ 519 (732)
....+.++.|++.|+++++.++..|+..|.+++......+..+.+.|+++.|+.+|.+++..++..++.+|.+|+. +++
T Consensus 94 i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~ 173 (644)
T 2z6h_A 94 IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQE 173 (644)
T ss_dssp HHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcH
Confidence 3446789999999999999999999999999998877888889999999999999999999999999999999997 577
Q ss_pred hHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhcc
Q 004761 520 NKAMIAEAGAIEPLIHVLKSGN-GGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSI 598 (732)
Q Consensus 520 ~k~~i~~~g~l~~Lv~lL~~~~-~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~ 598 (732)
++..+.+.|+++.|+.+|++++ ...+..++.+|.+|+....++..+...|+++.|+.++.+++...++.++++|.||+.
T Consensus 174 ~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~ 253 (644)
T 2z6h_A 174 SKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSD 253 (644)
T ss_dssp HHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhh
Confidence 8999999999999999999876 567889999999999999999999999999999999999999999999999999997
Q ss_pred CchhHHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCCh-hhHHHHHHcCcHHHHHHHHhcC--CHHHHHHHHHHH
Q 004761 599 FHENKARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVG-EGRLAIAREGGIPSLVEVVESG--SQRGKENAASIL 674 (732)
Q Consensus 599 ~~~n~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~-~~r~~i~~~~~I~~Lv~lL~~~--s~~~~e~A~~~L 674 (732)
..... ....|+++.|+.+| +.+..+++.|+++|.+|+... +.+..+.+.|+++.|+.++.+. .+.+++.|+.+|
T Consensus 254 ~~~~~--~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL 331 (644)
T 2z6h_A 254 AATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL 331 (644)
T ss_dssp GCTTC--CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cchhh--hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHH
Confidence 65332 22358999999999 778899999999999998864 6788899999999999999763 379999999999
Q ss_pred HHHhcCCh---HhHHHHHhCCCHHHHHHchhcCC-hHHHHHHHHHHHHhhcc
Q 004761 675 LQLCLHSP---KFCTLVLQEGAVPPLVGLSQSGT-PRAKEKAQQLLSHFRNQ 722 (732)
Q Consensus 675 ~~L~~~~~---~~~~~v~~~G~i~~L~~Ll~~g~-~~~k~kA~~lL~~l~~~ 722 (732)
.+|+..++ ..+..+.+.|+++.|+.++.+.+ +.+++.|.++|.++...
T Consensus 332 ~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~ 383 (644)
T 2z6h_A 332 RHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC 383 (644)
T ss_dssp HHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTS
T ss_pred HHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccC
Confidence 99998644 34556888999999999999886 68999999999998653
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=5.2e-21 Score=193.75 Aligned_cols=193 Identities=23% Similarity=0.267 Sum_probs=172.7
Q ss_pred CCHHHHHHhhccCCH--HHHHHHHHHHHHhhc-CCchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhcc-CchhH
Q 004761 487 GAIPPLLSLLYSEAQ--LTQEHAVTALLNLSI-NDENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSV-LEEYK 562 (732)
Q Consensus 487 G~I~~Lv~lL~s~~~--~v~~~A~~~L~nLs~-~~~~k~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~-~~~~k 562 (732)
-.++.|+.+|.++++ .++..|+++|.||+. ++.++..+.+.|++++|+.+|+++++++++.|+++|.+|+. ++++|
T Consensus 8 ~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk 87 (233)
T 3tt9_A 8 MTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNK 87 (233)
T ss_dssp CCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 368999999999887 899999999999996 56789999999999999999999999999999999999998 57899
Q ss_pred HHHHhcchHHHHHHhhc-CCCHHHHHHHHHHHHHhccCchhHHHHHhhchHHHHHHhc-----C------------CChH
Q 004761 563 AKIGRSGAVKALVDLLG-SGTLRGRKDAATALFNLSIFHENKARIIQAGAVKHLVDLM-----D------------PSTG 624 (732)
Q Consensus 563 ~~i~~~g~i~~Lv~lL~-~~~~~~~~~Al~aL~nLs~~~~n~~~lv~~G~V~~Ll~lL-----~------------~~~~ 624 (732)
..|.+.|+||+|+++|+ +++..+++.|+.+|+||+..+.+|..+++ +++++|++++ . .+..
T Consensus 88 ~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~-~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~ 166 (233)
T 3tt9_A 88 LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMIT-EALLTLTENIIIPFSGWPEGDYPKANGLLDFD 166 (233)
T ss_dssp HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHH-HHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHH
T ss_pred HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHh-ccHHHHHHHHhccccCCcccccccccccchHH
Confidence 99999999999999998 57899999999999999999999999887 5799999876 1 1447
Q ss_pred HHHHHHHHHHHHhC-ChhhHHHHHHcC-cHHHHHHHHhcC------CHHHHHHHHHHHHHHhcC
Q 004761 625 MVDKAVALLANLST-VGEGRLAIAREG-GIPSLVEVVESG------SQRGKENAASILLQLCLH 680 (732)
Q Consensus 625 l~e~al~iL~nLa~-~~~~r~~i~~~~-~I~~Lv~lL~~~------s~~~~e~A~~~L~~L~~~ 680 (732)
+.+.|.++|.||+. ++++|.+|.+.+ +|+.|+.+++.+ +...+|+|+.+|.|||..
T Consensus 167 v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 167 IFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 89999999999987 568999999875 589999999762 567899999999999974
|
| >2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C | Back alignment and structure |
|---|
Probab=99.86 E-value=3.2e-22 Score=192.19 Aligned_cols=94 Identities=32% Similarity=0.484 Sum_probs=80.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCccccccCcccCCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCC
Q 004761 207 QMNYIVDLISHIRDCMLKIERFEATSGVPIPPYFRCPLSLELMIDPVIVASGQTYERVFIQKWLDHGLNICPKTRQTLAH 286 (732)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~f~Cpi~~~lm~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~ 286 (732)
.++++..++..+.+. .....+|++|+||||+++|+|||+++|||||||.||++||..++.+||+||++++.
T Consensus 83 ~i~~~~~l~~~~~~~---------~~~~~ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~ 153 (179)
T 2f42_A 83 YLMDMDELFSQVDEK---------RKKREIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQ 153 (179)
T ss_dssp HHHHHHHHHHHHHHG---------GGCCCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred HHHHHHHHHHHHhhh---------ccccCCcHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCCh
Confidence 455666666544331 23457899999999999999999999999999999999998754589999999999
Q ss_pred CCCcccHHHHHHHHHHHHHcCCC
Q 004761 287 TNLIPNYTVKAMIENWCEENNLR 309 (732)
Q Consensus 287 ~~l~pn~~l~~~i~~~~~~~~~~ 309 (732)
.+|+||+.|+++|+.|+..||+.
T Consensus 154 ~~L~pN~~Lk~~Ie~~~~~~~~~ 176 (179)
T 2f42_A 154 DQLIPNLAMKEVIDAFIQENGWV 176 (179)
T ss_dssp GGCEECHHHHHHHHHHHHHCTTC
T ss_pred hhCcchHHHHHHHHHHHHHCCCc
Confidence 99999999999999999999874
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.85 E-value=6.1e-20 Score=219.32 Aligned_cols=277 Identities=23% Similarity=0.254 Sum_probs=234.5
Q ss_pred CchHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhc-CCHHHHHHhhccC-CHHHHHHHHHHHHHhhcCCchH
Q 004761 444 TPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNC-GAIPPLLSLLYSE-AQLTQEHAVTALLNLSINDENK 521 (732)
Q Consensus 444 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~-G~I~~Lv~lL~s~-~~~v~~~A~~~L~nLs~~~~~k 521 (732)
.+.++.|++.|.+.++.++..|+..|.+++... .++..+... |+++.|+.+|.++ ++.++..|+.+|.+|+.+..++
T Consensus 149 ~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~-~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~ 227 (780)
T 2z6g_A 149 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKE-ASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGL 227 (780)
T ss_dssp HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSH-HHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHH
T ss_pred hCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCC-hhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhH
Confidence 567899999999999999999999999999764 566666654 8999999999865 8999999999999999998888
Q ss_pred HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccC-chhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhcc-C
Q 004761 522 AMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVL-EEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSI-F 599 (732)
Q Consensus 522 ~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~-~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~-~ 599 (732)
..+.+.|+++.|+.+|+++++.++..|+++|.+|+.. ++.+..+...|+++.|+.+|++.+..++..|+.+|.+|+. +
T Consensus 228 ~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~ 307 (780)
T 2z6g_A 228 LAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGN 307 (780)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Confidence 8999999999999999999999999999999999986 4667777788999999999999888888888889998886 4
Q ss_pred chhHHHHHhhchHHHHHHhc--CCChHHHHHHHHHHHHHhCChhhHHHHHHcCcHHHH----------------------
Q 004761 600 HENKARIIQAGAVKHLVDLM--DPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSL---------------------- 655 (732)
Q Consensus 600 ~~n~~~lv~~G~V~~Ll~lL--~~~~~l~e~al~iL~nLa~~~~~r~~i~~~~~I~~L---------------------- 655 (732)
.+++..+++.|+++.|+.+| .......+.++.+|.+|+.++..+..+++.|+++.|
T Consensus 308 ~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L 387 (780)
T 2z6g_A 308 QESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL 387 (780)
T ss_dssp HHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHH
Confidence 56777888888888888888 334455667788888888777777777666655544
Q ss_pred -----------------HHHHhcCCHHHHHHHHHHHHHHhcCChHhHHHHHhCCCHHHHHHchhc-CC-hHHHHHHHHHH
Q 004761 656 -----------------VEVVESGSQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQS-GT-PRAKEKAQQLL 716 (732)
Q Consensus 656 -----------------v~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~v~~~G~i~~L~~Ll~~-g~-~~~k~kA~~lL 716 (732)
++++.+.++.+++.|+++|.+|+.++++.+..+.+.|+++.|+.++.. ++ +.++..|..+|
T Consensus 388 ~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL 467 (780)
T 2z6g_A 388 SDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL 467 (780)
T ss_dssp HTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 444555677888889999999998888888899999999999999987 34 48999999999
Q ss_pred HHhhc
Q 004761 717 SHFRN 721 (732)
Q Consensus 717 ~~l~~ 721 (732)
.++..
T Consensus 468 ~nL~~ 472 (780)
T 2z6g_A 468 RHLTS 472 (780)
T ss_dssp HHTTS
T ss_pred HHHHh
Confidence 99865
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A | Back alignment and structure |
|---|
Probab=99.85 E-value=7.1e-20 Score=182.60 Aligned_cols=196 Identities=27% Similarity=0.306 Sum_probs=179.7
Q ss_pred CchHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcC-CchHH
Q 004761 444 TPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSIN-DENKA 522 (732)
Q Consensus 444 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~-~~~k~ 522 (732)
.+..+.|+.+|.+.+++++..|++.|.+++..+++++..+.+.|+++.|+.+|+++++.++..|+++|.|++.. +.++.
T Consensus 11 ~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 90 (210)
T 4db6_A 11 GSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 90 (210)
T ss_dssp --CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred cchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHH
Confidence 44568899999999999999999999999999999999999999999999999999999999999999999964 57788
Q ss_pred HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccC-chhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhccC-c
Q 004761 523 MIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVL-EEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIF-H 600 (732)
Q Consensus 523 ~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~-~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~-~ 600 (732)
.+.+.|+++.|+.+|+++++.++..|+++|.+|+.. ++.+..+...|+++.|+.+|+++++.+++.|+.+|.||+.. +
T Consensus 91 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~ 170 (210)
T 4db6_A 91 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN 170 (210)
T ss_dssp HHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCH
T ss_pred HHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCc
Confidence 999999999999999999999999999999999964 45566778889999999999999999999999999999987 6
Q ss_pred hhHHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCC
Q 004761 601 ENKARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTV 639 (732)
Q Consensus 601 ~n~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~ 639 (732)
+++..+++.|+++.|++++ +.+..+++.|+.+|.+|+.+
T Consensus 171 ~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 210 (210)
T 4db6_A 171 EQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQSH 210 (210)
T ss_dssp HHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhcC
Confidence 7888899999999999999 88899999999999999863
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.85 E-value=5e-20 Score=220.01 Aligned_cols=271 Identities=19% Similarity=0.237 Sum_probs=229.8
Q ss_pred chHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCchHHHH
Q 004761 445 PYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAMI 524 (732)
Q Consensus 445 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k~~i 524 (732)
..++.+++.|.+++.+.+..++..++.. ++..+. .|+++.|+.+|.+.++.+++.|+.+|.+|+.+..++..+
T Consensus 115 ~~i~~lv~~L~~~~~~~r~~a~~~l~~~------~~~~i~-~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i 187 (780)
T 2z6g_A 115 SAHPTNVQRLAEPSQMLKHAVVNLINYQ------DDAELA-TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAI 187 (780)
T ss_dssp -----------CCSCHHHHHHHHHHHHH------HHHHHH-HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHH
T ss_pred ccHHHHHHHhcCccHHHHHHHHHHHHhh------hHHHHH-hCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHH
Confidence 3478999999999988888888888743 344554 799999999999999999999999999999987788777
Q ss_pred HH-cCCHHHHHHHHcCC-CHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhccCc-h
Q 004761 525 AE-AGAIEPLIHVLKSG-NGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFH-E 601 (732)
Q Consensus 525 ~~-~g~l~~Lv~lL~~~-~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~-~ 601 (732)
.. .|+++.|+.+|.++ +.+++.+|+.+|.+|+...+++..++..|+++.|+.+|+++++.++..|+.+|.||+... .
T Consensus 188 ~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~ 267 (780)
T 2z6g_A 188 MRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEG 267 (780)
T ss_dssp TTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTT
T ss_pred HhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChh
Confidence 75 48999999999866 899999999999999999889999999999999999999999999999999999999875 5
Q ss_pred hHHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhC-ChhhHHHHHHcCcHHHHHHHHhcCC-HHHHHHHHHHHHHHh
Q 004761 602 NKARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLST-VGEGRLAIAREGGIPSLVEVVESGS-QRGKENAASILLQLC 678 (732)
Q Consensus 602 n~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~-~~~~r~~i~~~~~I~~Lv~lL~~~s-~~~~e~A~~~L~~L~ 678 (732)
++..+++.|+++.|+.+| +.+..+...++.+|.+|+. +++++..+.+.++++.|++++++++ ...++.|+.+|++||
T Consensus 268 ~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls 347 (780)
T 2z6g_A 268 AKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLS 347 (780)
T ss_dssp HHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhh
Confidence 666777899999999999 7778888999999999986 5788999999999999999998765 456778999999999
Q ss_pred cCChHhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHhhccc
Q 004761 679 LHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFRNQR 723 (732)
Q Consensus 679 ~~~~~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~~~ 723 (732)
. ++..+..+++.|+++.|+.++.++++..++.|.++|..+....
T Consensus 348 ~-~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~ 391 (780)
T 2z6g_A 348 V-CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAA 391 (780)
T ss_dssp T-STTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTC
T ss_pred c-ChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccc
Confidence 7 6678889999999999999999999999999999999887544
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1.1e-19 Score=181.21 Aligned_cols=196 Identities=23% Similarity=0.293 Sum_probs=179.4
Q ss_pred HcCCHHHHHHHHcCCCHHHHHHHHHHHHHhcc-CchhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhcc-CchhH
Q 004761 526 EAGAIEPLIHVLKSGNGGAKENSAAALFSLSV-LEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSI-FHENK 603 (732)
Q Consensus 526 ~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~-~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~-~~~n~ 603 (732)
..++.++|+.+|++++++++..|+++|.+++. .++++..+...|+++.|+.+|+++++.++..|+.+|.||+. +++++
T Consensus 10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 89 (210)
T 4db6_A 10 HGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 89 (210)
T ss_dssp ---CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred ccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHH
Confidence 45789999999999999999999999999995 56778888999999999999999999999999999999996 56788
Q ss_pred HHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCC-hhhHHHHHHcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Q 004761 604 ARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTV-GEGRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCLHS 681 (732)
Q Consensus 604 ~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~-~~~r~~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~ 681 (732)
..+++.|+++.|+.+| +++..++..|+++|.||+.. ++.+..+.+.|+++.|++++.++++..++.|+++|.+++..+
T Consensus 90 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 169 (210)
T 4db6_A 90 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG 169 (210)
T ss_dssp HHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence 8999999999999999 77899999999999999964 456678889999999999999999999999999999999988
Q ss_pred hHhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHhhc
Q 004761 682 PKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFRN 721 (732)
Q Consensus 682 ~~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~ 721 (732)
+..+..+.+.|+++.|+.++.++++.++++|..+|+.|..
T Consensus 170 ~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 170 NEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred cHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999998864
|
| >2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.85 E-value=4.9e-22 Score=169.16 Aligned_cols=73 Identities=34% Similarity=0.465 Sum_probs=69.2
Q ss_pred CCCCCccccccCcccCCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHcC
Q 004761 234 VPIPPYFRCPLSLELMIDPVIVASGQTYERVFIQKWLDHGLNICPKTRQTLAHTNLIPNYTVKAMIENWCEENN 307 (732)
Q Consensus 234 ~~~p~~f~Cpi~~~lm~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn~~l~~~i~~~~~~~~ 307 (732)
..+|++|.||||+++|+|||+++|||||||.||++||.. +.+||+||+++...+|+||+.|+++|+.|+..|+
T Consensus 9 ~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~~~l~pn~~L~~~i~~~~~~~~ 81 (85)
T 2kr4_A 9 SDAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLN-SPTDPFNRQMLTESMLEPVPELKEQIQAWMREKQ 81 (85)
T ss_dssp TTCCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCGGGCEECHHHHHHHHHHHHHHH
T ss_pred hcCchheECcccCchhcCCeECCCCCEECHHHHHHHHhc-CCCCCCCcCCCChHhcchHHHHHHHHHHHHHHhh
Confidence 458999999999999999999999999999999999985 4799999999999999999999999999999885
|
| >2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B | Back alignment and structure |
|---|
Probab=99.85 E-value=7.2e-22 Score=173.07 Aligned_cols=74 Identities=35% Similarity=0.452 Sum_probs=69.9
Q ss_pred CCCCCCccccccCcccCCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHcC
Q 004761 233 GVPIPPYFRCPLSLELMIDPVIVASGQTYERVFIQKWLDHGLNICPKTRQTLAHTNLIPNYTVKAMIENWCEENN 307 (732)
Q Consensus 233 ~~~~p~~f~Cpi~~~lm~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn~~l~~~i~~~~~~~~ 307 (732)
...+|++|.||||+++|+|||+++|||||||.||++||.. +.+||+||++++..+|+||+.|++.|+.|+..|+
T Consensus 23 ~~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~~~ 96 (100)
T 2kre_A 23 YSDAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLN-SPTDPFNRQTLTESMLEPVPELKEQIQAWMREKQ 96 (100)
T ss_dssp CSSCSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTS-CSBCSSSCCBCCTTSSEECHHHHHHHHHHHHTTT
T ss_pred hccCcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHHc-CCCCCCCCCCCChhhceECHHHHHHHHHHHHHhh
Confidence 3468999999999999999999999999999999999985 5899999999999999999999999999999886
|
| >1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2 | Back alignment and structure |
|---|
Probab=99.84 E-value=1.4e-21 Score=170.52 Aligned_cols=74 Identities=28% Similarity=0.374 Sum_probs=70.4
Q ss_pred CCCCCccccccCcccCCCceecCCC-cccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHcCC
Q 004761 234 VPIPPYFRCPLSLELMIDPVIVASG-QTYERVFIQKWLDHGLNICPKTRQTLAHTNLIPNYTVKAMIENWCEENNL 308 (732)
Q Consensus 234 ~~~p~~f~Cpi~~~lm~dPV~~~~g-~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn~~l~~~i~~~~~~~~~ 308 (732)
..+|++|.||||+++|+|||+++|| |||||.||++||.. +.+||+|++++...+|+||+.||+.|+.|+..++.
T Consensus 17 ~~~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~-~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~~~~ 91 (98)
T 1wgm_A 17 ADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLS-DQTDPFNRSPLTMDQIRPNTELKEKIQRWLAERKQ 91 (98)
T ss_dssp CSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTT-SCBCTTTCSBCCTTTSEECHHHHHHHHHHHHHSTT
T ss_pred hcCcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHh-CCCCCCCCCCCChhhceEcHHHHHHHHHHHHHcch
Confidence 4689999999999999999999999 99999999999986 47999999999999999999999999999999975
|
| >3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A | Back alignment and structure |
|---|
Probab=99.80 E-value=4.3e-20 Score=214.84 Aligned_cols=123 Identities=20% Similarity=0.294 Sum_probs=97.4
Q ss_pred CCCCcCchHHHHHHHHHc----CCCCHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhhhhhcC
Q 004761 157 QDDTIRCTDHLVKIIESL----GLTSNQELLKESLAVEMERIRAERNQNKGHSDQMNYIVDLISHIRDCMLKIERFEATS 232 (732)
Q Consensus 157 ~~~~~~~~~~~~~i~~~~----~l~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (732)
.|+|+|+++.|.++...+ |+.+...+ .++..|.+.+++++...+..| ..
T Consensus 832 ~DgRSy~~elF~~a~~il~~~~~l~~~~~i-~~~~~l~~~~~~~~~~~~~~e--------------------------~~ 884 (968)
T 3m62_A 832 KDERSFNRNLFVRAVDILGRKTGLASPEFI-EKLLNFANKAEEQRKADEEED--------------------------LE 884 (968)
T ss_dssp HCTTTCCHHHHHHHHHHHTTSTTSSCHHHH-HHHHHHHHHHHHHHHHHHHHH--------------------------HH
T ss_pred hcCCCCCHHHHHHHHHHHHHhhcCCCHHHH-HHHHHHHHHHHHHHHHHHhhh--------------------------cc
Confidence 388999999998666544 57777766 555555555544322111100 01
Q ss_pred CCCCCCccccccCcccCCCceecCCC-cccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHcC
Q 004761 233 GVPIPPYFRCPLSLELMIDPVIVASG-QTYERVFIQKWLDHGLNICPKTRQTLAHTNLIPNYTVKAMIENWCEENN 307 (732)
Q Consensus 233 ~~~~p~~f~Cpi~~~lm~dPV~~~~g-~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn~~l~~~i~~~~~~~~ 307 (732)
..++|++|+|||++++|+|||++++| +||||.+|++|+..+ .+||+||++|++++++||++||+.|++||..++
T Consensus 885 ~~~iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~~-~tdP~Tr~~L~~~~liPN~~Lk~~I~~w~~~~~ 959 (968)
T 3m62_A 885 YGDVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLSD-STDPFNRMPLKLEDVTPNEELRQKILCFKKQKK 959 (968)
T ss_dssp HCCSCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTC-CBCTTTCCBCCGGGCEECHHHHHHHHHHHHHHH
T ss_pred ccCCcHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhcC-CCCCCCCCCCCcccccccHHHHHHHHHHHHHHH
Confidence 13599999999999999999999998 799999999999874 799999999999999999999999999999986
|
| >3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.78 E-value=6.9e-18 Score=194.84 Aligned_cols=273 Identities=15% Similarity=0.145 Sum_probs=226.2
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhc-CCHHHHHHhhcc-CCHHHHHHHHHHHHHhhcCCc----
Q 004761 446 YVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNC-GAIPPLLSLLYS-EAQLTQEHAVTALLNLSINDE---- 519 (732)
Q Consensus 446 ~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~-G~I~~Lv~lL~s-~~~~v~~~A~~~L~nLs~~~~---- 519 (732)
.++.+++.|..++.+.+..|+..|..++.+. +.|..+++. |+++.|+.++++ .+..+...++.+|.||+.+.+
T Consensus 335 La~~~~~~L~~~~~~~~~~AvEgLaYLSl~~-~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~ 413 (778)
T 3opb_A 335 LSEIFINAISRRIVPKVEMSVEALAYLSLKA-SVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXX 413 (778)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHHHHTTSS-HHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCC
T ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHHhCCH-HHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccch
Confidence 5678888898887777999999999999764 778888865 779999999985 788899999999999976321
Q ss_pred -----------------------------------hHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHH
Q 004761 520 -----------------------------------NKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAK 564 (732)
Q Consensus 520 -----------------------------------~k~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~ 564 (732)
++..+.+.|++++|+.+++++++.+++.|+++|.+|+.+.++|..
T Consensus 414 e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~ 493 (778)
T 3opb_A 414 XXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQ 493 (778)
T ss_dssp CCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHH
T ss_pred hhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 345566899999999999999999999999999999999999999
Q ss_pred HHhcchHHHHHHhhcCCCHH---HHHHHHHHHHHhccCchhHHHHHh---hchHHHHHHhcC--CCh-------------
Q 004761 565 IGRSGAVKALVDLLGSGTLR---GRKDAATALFNLSIFHENKARIIQ---AGAVKHLVDLMD--PST------------- 623 (732)
Q Consensus 565 i~~~g~i~~Lv~lL~~~~~~---~~~~Al~aL~nLs~~~~n~~~lv~---~G~V~~Ll~lL~--~~~------------- 623 (732)
+...|+++.|+.+|.+++.. ++..|+.||.+|+...+....+-. .|+|++|+++|. +..
T Consensus 494 lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~ 573 (778)
T 3opb_A 494 LAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKL 573 (778)
T ss_dssp HHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCH
T ss_pred HHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccH
Confidence 99999999999999987654 899999999999875543332211 499999999993 221
Q ss_pred HHHHHHHHHHHHHhCCh-----hhHHHHHHc-CcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHhH-HHHHhCC----
Q 004761 624 GMVDKAVALLANLSTVG-----EGRLAIARE-GGIPSLVEVVESGSQRGKENAASILLQLCLHSPKFC-TLVLQEG---- 692 (732)
Q Consensus 624 ~l~e~al~iL~nLa~~~-----~~r~~i~~~-~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~-~~v~~~G---- 692 (732)
--...|+.+|.|||..+ +.|..|+++ |+++.|..+|.+++...+..|++++.||+. +++.+ ..+.+.+
T Consensus 574 l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~-~~e~i~~k~~~~~~~~~ 652 (778)
T 3opb_A 574 TDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMS-HPLTIAAKFFNLENPQS 652 (778)
T ss_dssp HHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHT-SGGGTGGGTSCCSSHHH
T ss_pred HHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhC-CcHHHHHHHHhhcCchh
Confidence 12668999999999986 357888885 899999999999999999999999999998 55543 3443322
Q ss_pred --CHHHHHHchhcCChHHHHHHHHHHHHhh
Q 004761 693 --AVPPLVGLSQSGTPRAKEKAQQLLSHFR 720 (732)
Q Consensus 693 --~i~~L~~Ll~~g~~~~k~kA~~lL~~l~ 720 (732)
.++.|+.|+++++.++|+.|.++|.++.
T Consensus 653 ~~rL~lLV~Ll~s~D~~~r~AAagALAnLt 682 (778)
T 3opb_A 653 LRNFNILVKLLQLSDVESQRAVAAIFANIA 682 (778)
T ss_dssp HHHHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHcCCCHHHHHHHHHHHHHhc
Confidence 3778999999999999999999999984
|
| >1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2 | Back alignment and structure |
|---|
Probab=99.78 E-value=1.4e-19 Score=151.65 Aligned_cols=75 Identities=60% Similarity=1.146 Sum_probs=71.9
Q ss_pred CCCCCccccccCcccCCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHcCC
Q 004761 234 VPIPPYFRCPLSLELMIDPVIVASGQTYERVFIQKWLDHGLNICPKTRQTLAHTNLIPNYTVKAMIENWCEENNL 308 (732)
Q Consensus 234 ~~~p~~f~Cpi~~~lm~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn~~l~~~i~~~~~~~~~ 308 (732)
..+|++|.||||+++|.|||+++|||+||+.||.+|+..++.+||.|++++...++.||+.|+++|+.|..+|++
T Consensus 3 ~~~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~n~~l~~~i~~~~~~~~~ 77 (78)
T 1t1h_A 3 PEFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIALWCESNGI 77 (78)
T ss_dssp CCCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECTTTHHHHHHHHHHSCC
T ss_pred cCCcccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCccCHHHHHHHHHHHHHcCC
Confidence 468999999999999999999999999999999999998778999999999999999999999999999999986
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=99.77 E-value=1.3e-18 Score=182.21 Aligned_cols=79 Identities=35% Similarity=0.533 Sum_probs=73.7
Q ss_pred cCCCCCCCccccccCcccCCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHcCCC
Q 004761 231 TSGVPIPPYFRCPLSLELMIDPVIVASGQTYERVFIQKWLDHGLNICPKTRQTLAHTNLIPNYTVKAMIENWCEENNLR 309 (732)
Q Consensus 231 ~~~~~~p~~f~Cpi~~~lm~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn~~l~~~i~~~~~~~~~~ 309 (732)
....++|++|.||||+++|+|||+++|||||||.||++||..++.+||+|+++++..+++||+.|++.|+.|+..|++.
T Consensus 200 ~~~~~~~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~n~~l~~~i~~~~~~~~~~ 278 (281)
T 2c2l_A 200 RKKRDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAFISENGWV 278 (281)
T ss_dssp TSCCCCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECHHHHHHHHHHHTTCSCS
T ss_pred ccCCCCCcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCcccHHHHHHHHHHHHHCCCC
Confidence 3456789999999999999999999999999999999999987677999999999999999999999999999999874
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.2e-16 Score=168.26 Aligned_cols=233 Identities=18% Similarity=0.150 Sum_probs=187.2
Q ss_pred hHHHHHHHhcCC------------CHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHH-hhccCCHHHHHHHHHHHH
Q 004761 446 YVKKLIEDLNST------------SNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLS-LLYSEAQLTQEHAVTALL 512 (732)
Q Consensus 446 ~i~~Lv~~L~s~------------~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~-lL~s~~~~v~~~A~~~L~ 512 (732)
.++..++.|.++ +.+.+..|+..|..++.. .++...+.+.|++++|+. +|.++++.+++.|+++|.
T Consensus 29 ~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~-~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg 107 (296)
T 1xqr_A 29 QMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCEN-MDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIG 107 (296)
T ss_dssp HHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHhC-hhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 456777777764 235678899999999964 578888899999999999 999999999999999999
Q ss_pred HhhcC-CchHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHhccCc-hhHHHHHhcchHHHHHHhhcCCCHHHHHHH
Q 004761 513 NLSIN-DENKAMIAEAGAIEPLIHVLKSG-NGGAKENSAAALFSLSVLE-EYKAKIGRSGAVKALVDLLGSGTLRGRKDA 589 (732)
Q Consensus 513 nLs~~-~~~k~~i~~~g~l~~Lv~lL~~~-~~e~~~~Aa~~L~~Ls~~~-~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A 589 (732)
|++.+ +..+..+++.|++++|+.+|+++ +..++.+|+++|.+++... .....+...|+++.|+.+|++++..+++.|
T Consensus 108 ~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A 187 (296)
T 1xqr_A 108 TCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKS 187 (296)
T ss_dssp HHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHH
T ss_pred HHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHH
Confidence 99986 45788899999999999999964 7899999999999998754 556677788999999999999999999999
Q ss_pred HHHHHHhccC-chhHHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCChh-hHHHHHHc-CcHHHHH----HHHhc
Q 004761 590 ATALFNLSIF-HENKARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGE-GRLAIARE-GGIPSLV----EVVES 661 (732)
Q Consensus 590 l~aL~nLs~~-~~n~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~-~r~~i~~~-~~I~~Lv----~lL~~ 661 (732)
+++|.+|+.. ++.+..+++.|+++.|+.+| +++..+++.|+.+|.+|+.... ........ ..+..++ +.++.
T Consensus 188 ~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~lq~ 267 (296)
T 1xqr_A 188 AFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQ 267 (296)
T ss_dssp HHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHHHHccc
Confidence 9999999874 66888999999999999999 7788999999999999988732 22222221 1232222 23332
Q ss_pred -C-CHHHHHHHHHHHHHHhc
Q 004761 662 -G-SQRGKENAASILLQLCL 679 (732)
Q Consensus 662 -~-s~~~~e~A~~~L~~L~~ 679 (732)
. +.+..+.|..++-++..
T Consensus 268 ~e~~~e~~~~~~~il~~~f~ 287 (296)
T 1xqr_A 268 HEEYQEELEFCEKLLQTCFS 287 (296)
T ss_dssp CGGGHHHHHHHHHHHHHHCC
T ss_pred hHHHHHHHHHHHHHHHHHcC
Confidence 2 45667777777666553
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=4.2e-17 Score=171.75 Aligned_cols=181 Identities=21% Similarity=0.217 Sum_probs=166.4
Q ss_pred HHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHH-hhcCCCHHHHHHHHHHHHHhccCc-hhHHHHHhhchHHHHHHhc
Q 004761 542 GGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVD-LLGSGTLRGRKDAATALFNLSIFH-ENKARIIQAGAVKHLVDLM 619 (732)
Q Consensus 542 ~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~-lL~~~~~~~~~~Al~aL~nLs~~~-~n~~~lv~~G~V~~Ll~lL 619 (732)
.+.+..|+..|.++....++...+...|++++|+. +|.++++.++..|+++|.|++.++ .++..+++.|++++|+.+|
T Consensus 54 ~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL 133 (296)
T 1xqr_A 54 QQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLL 133 (296)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHH
Confidence 56788999999999998889998999999999999 999999999999999999999865 5778899999999999999
Q ss_pred --CCChHHHHHHHHHHHHHhCC-hhhHHHHHHcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHhHHHHHhCCCHHH
Q 004761 620 --DPSTGMVDKAVALLANLSTV-GEGRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCLHSPKFCTLVLQEGAVPP 696 (732)
Q Consensus 620 --~~~~~l~e~al~iL~nLa~~-~~~r~~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~v~~~G~i~~ 696 (732)
+++..++..|+++|.||+.+ +.+...+.+.|+++.|+.+|.++++..+..|+++|.+++.++++.+..+++.|+++.
T Consensus 134 ~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~ 213 (296)
T 1xqr_A 134 DRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQ 213 (296)
T ss_dssp HHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHH
T ss_pred ccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHH
Confidence 45788999999999999975 566778999999999999999999999999999999999988899999999999999
Q ss_pred HHHchhcCChHHHHHHHHHHHHhhcc
Q 004761 697 LVGLSQSGTPRAKEKAQQLLSHFRNQ 722 (732)
Q Consensus 697 L~~Ll~~g~~~~k~kA~~lL~~l~~~ 722 (732)
|+.++.++++.+++.|..+|.++-..
T Consensus 214 Lv~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 214 LVALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCChhHHHHHHHHHHHHHhC
Confidence 99999999999999999999888544
|
| >2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=4.5e-19 Score=153.93 Aligned_cols=73 Identities=26% Similarity=0.452 Sum_probs=65.6
Q ss_pred CCCccccccCcccCCCceecC-CCcccchHHHHHHHhcC-----CCCCCCCCCC---CCCCCCcccHHHHHHHHHHHHHc
Q 004761 236 IPPYFRCPLSLELMIDPVIVA-SGQTYERVFIQKWLDHG-----LNICPKTRQT---LAHTNLIPNYTVKAMIENWCEEN 306 (732)
Q Consensus 236 ~p~~f~Cpi~~~lm~dPV~~~-~g~ty~r~~I~~~~~~~-----~~~cP~~~~~---l~~~~l~pn~~l~~~i~~~~~~~ 306 (732)
.+++|.||||+++|+|||+++ |||||||.||++||..+ ..+||+||.+ +...+|+||..|+++|+.|+..+
T Consensus 4 ~~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~~L~~~I~~~~~~~ 83 (94)
T 2yu4_A 4 GSSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDEALRRAIENHNKKR 83 (94)
T ss_dssp CSSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECHHHHHHHHHHHTTC
T ss_pred CCcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCHHHHHHHHHHHHHh
Confidence 578999999999999999996 99999999999999753 4689995555 88899999999999999999888
Q ss_pred CC
Q 004761 307 NL 308 (732)
Q Consensus 307 ~~ 308 (732)
+-
T Consensus 84 ~r 85 (94)
T 2yu4_A 84 HR 85 (94)
T ss_dssp CS
T ss_pred cc
Confidence 63
|
| >2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A | Back alignment and structure |
|---|
Probab=99.64 E-value=4.3e-17 Score=128.87 Aligned_cols=55 Identities=16% Similarity=0.331 Sum_probs=50.6
Q ss_pred ccccccCcccCCCceec-CCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHH
Q 004761 239 YFRCPLSLELMIDPVIV-ASGQTYERVFIQKWLDHGLNICPKTRQTLAHTNLIPNYT 294 (732)
Q Consensus 239 ~f~Cpi~~~lm~dPV~~-~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn~~ 294 (732)
.|.||||+++|+|||++ +|||||||.+|++|+..+ .+||+||++|..++|+||+.
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~-~~cP~t~~~L~~~~Lip~~~ 58 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDT-GNDPITNEPLSIEEIVEIVP 58 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHH-SBCTTTCCBCCGGGCEECCC
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhC-CCCcCCcCCCChhhcEECcc
Confidence 58999999999999999 999999999999999865 57999999999999999863
|
| >3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=2.4e-15 Score=129.95 Aligned_cols=76 Identities=25% Similarity=0.446 Sum_probs=68.9
Q ss_pred CCCCCCccccccCcccCCCceecC-CCcccchHHHHHHHhc-CCCCCCCCCCCC-CCCCCcccHHHHHHHHHHHHHcCC
Q 004761 233 GVPIPPYFRCPLSLELMIDPVIVA-SGQTYERVFIQKWLDH-GLNICPKTRQTL-AHTNLIPNYTVKAMIENWCEENNL 308 (732)
Q Consensus 233 ~~~~p~~f~Cpi~~~lm~dPV~~~-~g~ty~r~~I~~~~~~-~~~~cP~~~~~l-~~~~l~pn~~l~~~i~~~~~~~~~ 308 (732)
...++++|.||||+++|.|||+++ |||+||+.||.+|+.. +..+||.|++++ ....+.||..++++|+.|...+++
T Consensus 7 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~~~~~~ 85 (92)
T 3ztg_A 7 DDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIANKFLRQAVNNFKNETGY 85 (92)
T ss_dssp CCCCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCEECHHHHHHHHHHHHHHTC
T ss_pred cccCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccCcCHHHHHHHHHHHHHHhH
Confidence 346789999999999999999999 9999999999999975 447899999998 567899999999999999998875
|
| >3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.8e-14 Score=144.44 Aligned_cols=70 Identities=16% Similarity=0.264 Sum_probs=63.8
Q ss_pred CCCccccccCcccCCCceec-CCCcccchHHHHHHHhc-CCCCCCC--CCCCCCCCCCcccHHHHHHHHHHHHH
Q 004761 236 IPPYFRCPLSLELMIDPVIV-ASGQTYERVFIQKWLDH-GLNICPK--TRQTLAHTNLIPNYTVKAMIENWCEE 305 (732)
Q Consensus 236 ~p~~f~Cpi~~~lm~dPV~~-~~g~ty~r~~I~~~~~~-~~~~cP~--~~~~l~~~~l~pn~~l~~~i~~~~~~ 305 (732)
...+|.||||+++|+|||+. .|||+|||.||.+||.. |..+||+ |++++...+|+||..|+++|+.|..+
T Consensus 178 ~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN~~L~~lve~~k~r 251 (267)
T 3htk_C 178 GKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPIMELRCKIAKMK 251 (267)
T ss_dssp SBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEECHHHHHHHHHHHHH
T ss_pred CceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcCHHHHHHHHHHHHH
Confidence 46799999999999999985 99999999999999986 3468999 98999999999999999999999764
|
| >3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.46 E-value=3e-14 Score=130.30 Aligned_cols=70 Identities=14% Similarity=0.300 Sum_probs=63.9
Q ss_pred CCCccccccCcccCCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCC-CCCcccHHHHHHHHHHHHH
Q 004761 236 IPPYFRCPLSLELMIDPVIVASGQTYERVFIQKWLDHGLNICPKTRQTLAH-TNLIPNYTVKAMIENWCEE 305 (732)
Q Consensus 236 ~p~~f~Cpi~~~lm~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~-~~l~pn~~l~~~i~~~~~~ 305 (732)
++++|.||||+++|.|||+++|||+||+.||.+|+..+..+||.|++++.. ..+.||..|+++|+.|...
T Consensus 49 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~p~ 119 (124)
T 3fl2_A 49 VEETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQPLQTVLNQLFPG 119 (124)
T ss_dssp HHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCCCHHHHHHHHHHSTT
T ss_pred CccCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCCCCCCCCCHHHHHHHHHHccc
Confidence 457799999999999999999999999999999999766799999999987 7899999999999988543
|
| >3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A | Back alignment and structure |
|---|
Probab=99.43 E-value=1.2e-11 Score=139.62 Aligned_cols=272 Identities=19% Similarity=0.189 Sum_probs=213.7
Q ss_pred CchHHHHHHHhcCC-CHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcc--CCHHHHHHHHHHHHHhhcC-Cc
Q 004761 444 TPYVKKLIEDLNST-SNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYS--EAQLTQEHAVTALLNLSIN-DE 519 (732)
Q Consensus 444 ~~~i~~Lv~~L~s~-~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s--~~~~v~~~A~~~L~nLs~~-~~ 519 (732)
...|+.|+..+.+. -.+.++.|+..|+.+++.. +..++ .++++.|+..|+. .|.++...++.+|.++-.. +.
T Consensus 20 ~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y---~~~Vg-~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~ 95 (651)
T 3grl_A 20 AETIQKLCDRVASSTLLDDRRNAVRALKSLSKKY---RLEVG-IQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEE 95 (651)
T ss_dssp HHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTT---TTHHH-HHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--
T ss_pred hhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHh---HHHhh-hhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCc
Confidence 45689999999754 5789999999999999754 33444 5789999999976 5889999999999887442 21
Q ss_pred -----------------hHHHH-HHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCch--hHHHHHhc-chHHHHHHhh
Q 004761 520 -----------------NKAMI-AEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEE--YKAKIGRS-GAVKALVDLL 578 (732)
Q Consensus 520 -----------------~k~~i-~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~--~k~~i~~~-g~i~~Lv~lL 578 (732)
+...+ .+.+.++.|+.+|+..+...|.+++.+|..|+.... ++..|... ++|+.|+.+|
T Consensus 96 ~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL 175 (651)
T 3grl_A 96 EEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLL 175 (651)
T ss_dssp ------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGG
T ss_pred ccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHH
Confidence 11222 356789999999999999999999999999987442 56677754 9999999999
Q ss_pred cCCCHHHHHHHHHHHHHhccCchhHHHHHh-hchHHHHHHhc-C----CChHHHHHHHHHHHHHhCCh-hhHHHHHHcCc
Q 004761 579 GSGTLRGRKDAATALFNLSIFHENKARIIQ-AGAVKHLVDLM-D----PSTGMVDKAVALLANLSTVG-EGRLAIAREGG 651 (732)
Q Consensus 579 ~~~~~~~~~~Al~aL~nLs~~~~n~~~lv~-~G~V~~Ll~lL-~----~~~~l~e~al~iL~nLa~~~-~~r~~i~~~~~ 651 (732)
.+.....+-.|+..|.+|+..+.+..+++. .|+++.|+.++ . ....+++.|+.+|.||.+.. .++..+.+.++
T Consensus 176 ~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~ 255 (651)
T 3grl_A 176 ADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSY 255 (651)
T ss_dssp GCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTC
T ss_pred hCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCC
Confidence 999899999999999999998888777777 69999999999 2 23467899999999998865 47888899999
Q ss_pred HHHHHHHHhcCCH------HHHHH---HHHHHHHHhcC------ChHhHHHHHhCCCHHHHHHchhcC--ChHHHHHHHH
Q 004761 652 IPSLVEVVESGSQ------RGKEN---AASILLQLCLH------SPKFCTLVLQEGAVPPLVGLSQSG--TPRAKEKAQQ 714 (732)
Q Consensus 652 I~~Lv~lL~~~s~------~~~e~---A~~~L~~L~~~------~~~~~~~v~~~G~i~~L~~Ll~~g--~~~~k~kA~~ 714 (732)
++.|..++..+.+ ....+ +..++.-|+.. ++.++..+.+.|+++.|+.++... ...++..|..
T Consensus 256 i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~ 335 (651)
T 3grl_A 256 IQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETIN 335 (651)
T ss_dssp GGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHH
T ss_pred HHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHH
Confidence 9999999865321 12233 66666666664 235788889999999999998875 3567777766
Q ss_pred HHHHh
Q 004761 715 LLSHF 719 (732)
Q Consensus 715 lL~~l 719 (732)
++..+
T Consensus 336 tla~~ 340 (651)
T 3grl_A 336 TVSEV 340 (651)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66544
|
| >1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.42 E-value=7.5e-14 Score=131.63 Aligned_cols=69 Identities=20% Similarity=0.387 Sum_probs=64.0
Q ss_pred CCCccccccCcccCCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCC-CCcccHHHHHHHHHHHH
Q 004761 236 IPPYFRCPLSLELMIDPVIVASGQTYERVFIQKWLDHGLNICPKTRQTLAHT-NLIPNYTVKAMIENWCE 304 (732)
Q Consensus 236 ~p~~f~Cpi~~~lm~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~-~l~pn~~l~~~i~~~~~ 304 (732)
++++|.||||+++|.|||+++|||+||+.||.+|+..+..+||.|++++... .+.||..|+++|+.|..
T Consensus 75 l~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~~~~p 144 (150)
T 1z6u_A 75 LEQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQTLLDLFFP 144 (150)
T ss_dssp HHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCBCHHHHHHHHHHST
T ss_pred CccCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCCCCCCCCHHHHHHHHHHhh
Confidence 4678999999999999999999999999999999998767899999999887 89999999999998863
|
| >2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.36 E-value=2.5e-13 Score=118.94 Aligned_cols=70 Identities=20% Similarity=0.385 Sum_probs=64.4
Q ss_pred CCCccccccCcccCCCceec-CCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHc
Q 004761 236 IPPYFRCPLSLELMIDPVIV-ASGQTYERVFIQKWLDHGLNICPKTRQTLAHTNLIPNYTVKAMIENWCEEN 306 (732)
Q Consensus 236 ~p~~f~Cpi~~~lm~dPV~~-~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn~~l~~~i~~~~~~~ 306 (732)
+++++.||||++.|.|||++ +|||+||+.||.+|+..+ .+||.|++++...++.||..++++|+.|....
T Consensus 19 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~-~~CP~Cr~~~~~~~l~~n~~l~~~i~~~~~~~ 89 (99)
T 2y43_A 19 IDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYK-TQCPTCCVTVTEPDLKNNRILDELVKSLNFAR 89 (99)
T ss_dssp HHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTC-CBCTTTCCBCCGGGCEECHHHHHHHHHHHHHH
T ss_pred CCCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHCC-CCCCCCCCcCChhhCCcCHHHHHHHHHHHHHH
Confidence 35679999999999999998 899999999999999864 78999999999889999999999999998765
|
| >3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A | Back alignment and structure |
|---|
Probab=99.36 E-value=1.2e-10 Score=131.62 Aligned_cols=276 Identities=14% Similarity=0.085 Sum_probs=214.0
Q ss_pred CchHHHHHHHhcC--CCHHHHHHHHHHHHHHhccChh-----------------hH-HHHHhcCCHHHHHHhhccCCHHH
Q 004761 444 TPYVKKLIEDLNS--TSNEIQASAAAELRLLAKHNME-----------------NR-MIIGNCGAIPPLLSLLYSEAQLT 503 (732)
Q Consensus 444 ~~~i~~Lv~~L~s--~~~~~~~~Al~~L~~La~~~~~-----------------~r-~~i~~~G~I~~Lv~lL~s~~~~v 503 (732)
...++.|+.-|+. .+.+....++..|.++...+.. +. ..+.+.+.|+.|+.+|.+.+..+
T Consensus 59 ~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~v 138 (651)
T 3grl_A 59 IQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHV 138 (651)
T ss_dssp HHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHH
T ss_pred hhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHH
Confidence 4457889999875 4678888899999776544322 12 22345689999999999999999
Q ss_pred HHHHHHHHHHhhcCCc--hHHHHH-HcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHH-hcchHHHHHHhhc
Q 004761 504 QEHAVTALLNLSINDE--NKAMIA-EAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIG-RSGAVKALVDLLG 579 (732)
Q Consensus 504 ~~~A~~~L~nLs~~~~--~k~~i~-~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~-~~g~i~~Lv~lL~ 579 (732)
+..++..|..|+.... ++..+. ..++++.|+.+|++....+|..|+.+|.+|+..+.....+. -.|+++.|+.+++
T Consensus 139 R~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~ 218 (651)
T 3grl_A 139 RWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIIT 218 (651)
T ss_dssp HHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHH
Confidence 9999999999987643 577777 45999999999999999999999999999998776655554 5599999999998
Q ss_pred CCC----HHHHHHHHHHHHHhccCch-hHHHHHhhchHHHHHHhc-CC-Ch------HH--HHHHHHHHHHHhCC-----
Q 004761 580 SGT----LRGRKDAATALFNLSIFHE-NKARIIQAGAVKHLVDLM-DP-ST------GM--VDKAVALLANLSTV----- 639 (732)
Q Consensus 580 ~~~----~~~~~~Al~aL~nLs~~~~-n~~~lv~~G~V~~Ll~lL-~~-~~------~l--~e~al~iL~nLa~~----- 639 (732)
.+. ..+..+++.+|.||..++. |+..+.+.|+++.|..+| .. .. .+ ...++.++..|+..
T Consensus 219 ~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~ 298 (651)
T 3grl_A 219 EEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPG 298 (651)
T ss_dssp HHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHH
T ss_pred hcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 643 4778999999999998764 899999999999999999 22 11 11 22367777777664
Q ss_pred --hhhHHHHHHcCcHHHHHHHHhcC--CHHHHHHHHHHHHHHhcCChHhHHHHHhCC---------CHHHHHHchhcCC-
Q 004761 640 --GEGRLAIAREGGIPSLVEVVESG--SQRGKENAASILLQLCLHSPKFCTLVLQEG---------AVPPLVGLSQSGT- 705 (732)
Q Consensus 640 --~~~r~~i~~~~~I~~Lv~lL~~~--s~~~~e~A~~~L~~L~~~~~~~~~~v~~~G---------~i~~L~~Ll~~g~- 705 (732)
+.++.++.+.|++..|++++... ....+..|+.++..++++++..+..+.+.. ++..|+.++.+..
T Consensus 299 ~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~ 378 (651)
T 3grl_A 299 ATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQP 378 (651)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSC
T ss_pred CCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhccccc
Confidence 23577889999999999998764 678899999999999999999999888653 2333444455444
Q ss_pred hHHHHHHHHHHHHh
Q 004761 706 PRAKEKAQQLLSHF 719 (732)
Q Consensus 706 ~~~k~kA~~lL~~l 719 (732)
...|-.|..+++.+
T Consensus 379 ~~lR~Aa~~cl~ay 392 (651)
T 3grl_A 379 FVLRCAVLYCFQCF 392 (651)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 57787777777766
|
| >2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A | Back alignment and structure |
|---|
Probab=99.31 E-value=9.6e-13 Score=117.14 Aligned_cols=67 Identities=18% Similarity=0.399 Sum_probs=61.5
Q ss_pred CCCccccccCcccCCCceec-CCCcccchHHHHHHHhcCCCCCCCCCCCCCCC----CCcccHHHHHHHHHHH
Q 004761 236 IPPYFRCPLSLELMIDPVIV-ASGQTYERVFIQKWLDHGLNICPKTRQTLAHT----NLIPNYTVKAMIENWC 303 (732)
Q Consensus 236 ~p~~f~Cpi~~~lm~dPV~~-~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~----~l~pn~~l~~~i~~~~ 303 (732)
+++++.||||+++|.|||++ +|||+||+.||.+|+..+ .+||.|++++... .+.+|..++++++.|.
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~-~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i~~~~ 83 (108)
T 2ckl_A 12 LNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETS-KYCPICDVQVHKTRPLLNIRSDKTLQDIVYKLV 83 (108)
T ss_dssp HGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSC-SBCTTTCCBSCSSCGGGGEEECHHHHHHHHHHS
T ss_pred cCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhC-CcCcCCCccccccCcccccCcCHHHHHHHHHHh
Confidence 56889999999999999998 999999999999999876 7899999999875 7899999999998874
|
| >2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.2e-13 Score=115.48 Aligned_cols=64 Identities=20% Similarity=0.400 Sum_probs=57.3
Q ss_pred CCCCccccccCcccCCCceecCCCcccchHHHHHHHhcC------CCCCCCCCCCCCCCCCcccHHHHHH
Q 004761 235 PIPPYFRCPLSLELMIDPVIVASGQTYERVFIQKWLDHG------LNICPKTRQTLAHTNLIPNYTVKAM 298 (732)
Q Consensus 235 ~~p~~f~Cpi~~~lm~dPV~~~~g~ty~r~~I~~~~~~~------~~~cP~~~~~l~~~~l~pn~~l~~~ 298 (732)
.+.+++.||||++.|.|||+++|||+||+.||.+|+... ..+||.|++++...++.||+.|+++
T Consensus 8 ~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~l 77 (79)
T 2egp_A 8 NVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQANQHLANI 77 (79)
T ss_dssp CCCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGTCSSSCCC
T ss_pred hcccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCcCHHHHHh
Confidence 467899999999999999999999999999999999863 5789999999998899999876544
|
| >3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.2e-12 Score=114.66 Aligned_cols=71 Identities=20% Similarity=0.333 Sum_probs=64.3
Q ss_pred CCCccccccCcccCCCcee-cCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHc
Q 004761 236 IPPYFRCPLSLELMIDPVI-VASGQTYERVFIQKWLDHGLNICPKTRQTLAHTNLIPNYTVKAMIENWCEEN 306 (732)
Q Consensus 236 ~p~~f~Cpi~~~lm~dPV~-~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn~~l~~~i~~~~~~~ 306 (732)
+.++|.||||+++|.|||+ ++|||+||+.||.+|+.....+||.|+.++....+++|..+..+++......
T Consensus 19 l~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~~~~~~~~i~~~~~~l~ 90 (100)
T 3lrq_A 19 IAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRWAEEVTQQLDTLQ 90 (100)
T ss_dssp HHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECTTHHHHHHHHHHHC
T ss_pred CCCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhHhhHHHHHHHHHHHHHH
Confidence 4467999999999999999 9999999999999999987679999999999999999999999888876654
|
| >3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A | Back alignment and structure |
|---|
Probab=99.28 E-value=1.3e-12 Score=118.28 Aligned_cols=68 Identities=22% Similarity=0.443 Sum_probs=62.9
Q ss_pred CCCCccccccCcccCCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHH
Q 004761 235 PIPPYFRCPLSLELMIDPVIVASGQTYERVFIQKWLDHGLNICPKTRQTLAHTNLIPNYTVKAMIENW 302 (732)
Q Consensus 235 ~~p~~f~Cpi~~~lm~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn~~l~~~i~~~ 302 (732)
.++++|.||||+++|.+||+++|||+||+.||.+|+..+..+||.|+.++....+.||..+++.|..+
T Consensus 14 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~i~~l 81 (118)
T 3hct_A 14 PLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSL 81 (118)
T ss_dssp CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTS
T ss_pred CCCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhcccCHHHHHHHccc
Confidence 57789999999999999999999999999999999987766999999999998999999999988764
|
| >2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.27 E-value=6.4e-13 Score=112.60 Aligned_cols=64 Identities=30% Similarity=0.507 Sum_probs=57.3
Q ss_pred CCCCccccccCcccCCCceecCCCcccchHHHHHHHhc-----CCCCCCCCCCCCCCCCCcccHHHHHH
Q 004761 235 PIPPYFRCPLSLELMIDPVIVASGQTYERVFIQKWLDH-----GLNICPKTRQTLAHTNLIPNYTVKAM 298 (732)
Q Consensus 235 ~~p~~f~Cpi~~~lm~dPV~~~~g~ty~r~~I~~~~~~-----~~~~cP~~~~~l~~~~l~pn~~l~~~ 298 (732)
.+.++|.||||++.|.+||+++|||+||+.||.+|+.. +...||.|++++...++.||+.++++
T Consensus 15 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~~ 83 (85)
T 2ecw_A 15 MIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNLHVANI 83 (85)
T ss_dssp CCCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECSCCCSS
T ss_pred hCccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCHHHHHh
Confidence 46789999999999999999999999999999999986 25789999999999899999776554
|
| >4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C | Back alignment and structure |
|---|
Probab=99.27 E-value=4e-12 Score=118.32 Aligned_cols=64 Identities=16% Similarity=0.388 Sum_probs=53.0
Q ss_pred CCccccccCcccCCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHH
Q 004761 237 PPYFRCPLSLELMIDPVIVASGQTYERVFIQKWLDHGLNICPKTRQTLAHTNLIPNYTVKAMIENWC 303 (732)
Q Consensus 237 p~~f~Cpi~~~lm~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn~~l~~~i~~~~ 303 (732)
.++|.||||++.|.|||+++|||+||+.||.+|+... .+||.|++++... .+|..+...|..+.
T Consensus 51 ~~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~~~--~~~~~~~~~i~~~~ 114 (138)
T 4ayc_A 51 ENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRK-IECPICRKDIKSK--TYSLVLDNCINKMV 114 (138)
T ss_dssp HHHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTTC-SBCTTTCCBCCCE--EECHHHHHHHHHHH
T ss_pred cccCCCcccCcccCCceECCCCCCccHHHHHHHHHcC-CcCCCCCCcCCCC--CCccchhHHHHHHH
Confidence 3578999999999999999999999999999999864 7899999998653 34566666666554
|
| >1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 | Back alignment and structure |
|---|
Probab=99.26 E-value=1.8e-12 Score=117.11 Aligned_cols=68 Identities=15% Similarity=0.277 Sum_probs=62.9
Q ss_pred CCCccccccCcccCCCceec-CCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHc
Q 004761 236 IPPYFRCPLSLELMIDPVIV-ASGQTYERVFIQKWLDHGLNICPKTRQTLAHTNLIPNYTVKAMIENWCEEN 306 (732)
Q Consensus 236 ~p~~f~Cpi~~~lm~dPV~~-~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn~~l~~~i~~~~~~~ 306 (732)
+.++|.||||+++|.|||++ +|||+||+.||.+|+. ..||.|+.++...++.||+.|+++|..|....
T Consensus 19 l~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~---~~CP~Cr~~~~~~~~~~n~~l~~l~~~~~~~~ 87 (117)
T 1jm7_B 19 LEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG---TGCPVCYTPAWIQDLKINRQLDSMIQLCSKLR 87 (117)
T ss_dssp HHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT---TBCSSSCCBCSCSSCCCCHHHHHHHHHHHHHH
T ss_pred chhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc---CCCcCCCCcCccccccccHHHHHHHHHHHHHH
Confidence 35679999999999999999 9999999999999997 68999999998889999999999999997765
|
| >3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.26 E-value=9.2e-13 Score=118.65 Aligned_cols=69 Identities=17% Similarity=0.357 Sum_probs=62.4
Q ss_pred CCCccccccCcccCCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCC-------CCCcccHHHHHHHHHHHH
Q 004761 236 IPPYFRCPLSLELMIDPVIVASGQTYERVFIQKWLDHGLNICPKTRQTLAH-------TNLIPNYTVKAMIENWCE 304 (732)
Q Consensus 236 ~p~~f~Cpi~~~lm~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~-------~~l~pn~~l~~~i~~~~~ 304 (732)
..++|.||||+++|.+||+++|||+||+.||.+|+..+..+||.|++++.. ..+.+|..|...|+.|..
T Consensus 12 ~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~n~~l~~~i~~~~p 87 (115)
T 3l11_A 12 SLSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTRRNSLVNVELWTIIQKHYP 87 (115)
T ss_dssp CHHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHHHHHHHHHTTCCBCHHHHHHHHHHSH
T ss_pred CCCCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCccccccccccchhhHHHHHHHHHHCC
Confidence 446899999999999999999999999999999998877899999999864 678899999999999853
|
| >2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B | Back alignment and structure |
|---|
Probab=99.26 E-value=1.7e-12 Score=124.72 Aligned_cols=69 Identities=20% Similarity=0.387 Sum_probs=62.0
Q ss_pred CCCccccccCcccCCCceec-CCCcccchHHHHHHHhcCCCCCCCCCCCCCC-CCCcccHHHHHHHHHHHH
Q 004761 236 IPPYFRCPLSLELMIDPVIV-ASGQTYERVFIQKWLDHGLNICPKTRQTLAH-TNLIPNYTVKAMIENWCE 304 (732)
Q Consensus 236 ~p~~f~Cpi~~~lm~dPV~~-~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~-~~l~pn~~l~~~i~~~~~ 304 (732)
+.+++.||||++.|.|||++ +|||+||+.||.+|+..++.+||.|+.++.. ..+.||..++++|..|..
T Consensus 51 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~~~~l~~~i~~~~~ 121 (165)
T 2ckl_B 51 LHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYP 121 (165)
T ss_dssp CHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSGGGEEECHHHHHHHHHHC-
T ss_pred CCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCcccCCcCHHHHHHHHHHHc
Confidence 45688999999999999998 9999999999999999877899999999854 579999999999999844
|
| >2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.25 E-value=8.5e-13 Score=111.83 Aligned_cols=64 Identities=23% Similarity=0.500 Sum_probs=57.3
Q ss_pred CCCCccccccCcccCCCceecCCCcccchHHHHHHHhc-----CCCCCCCCCCCCCCCCCcccHHHHHH
Q 004761 235 PIPPYFRCPLSLELMIDPVIVASGQTYERVFIQKWLDH-----GLNICPKTRQTLAHTNLIPNYTVKAM 298 (732)
Q Consensus 235 ~~p~~f~Cpi~~~lm~dPV~~~~g~ty~r~~I~~~~~~-----~~~~cP~~~~~l~~~~l~pn~~l~~~ 298 (732)
.+++++.||||++.+.+|++++|||+||+.||.+|+.. +...||.|++++...++.||+.|+++
T Consensus 15 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~~ 83 (85)
T 2ecv_A 15 NVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNRHVANI 83 (85)
T ss_dssp CCCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCSCCCCCC
T ss_pred HccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCccHHHHHh
Confidence 46789999999999999999999999999999999976 35789999999999999999876544
|
| >2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.25 E-value=5e-12 Score=101.78 Aligned_cols=55 Identities=9% Similarity=0.309 Sum_probs=49.8
Q ss_pred CCCCccccccCcccCCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 004761 235 PIPPYFRCPLSLELMIDPVIVASGQTYERVFIQKWLDHGLNICPKTRQTLAHTNL 289 (732)
Q Consensus 235 ~~p~~f~Cpi~~~lm~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l 289 (732)
.+++++.||||++.|++||+++|||+||+.||.+|+..+..+||.|++++...++
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~i 65 (66)
T 2ecy_A 11 TVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKDKV 65 (66)
T ss_dssp SCCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTTC
T ss_pred cCCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhhc
Confidence 4678999999999999999999999999999999997666899999999876654
|
| >2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.25 E-value=2.4e-12 Score=108.21 Aligned_cols=64 Identities=14% Similarity=0.179 Sum_probs=55.4
Q ss_pred CCCCccccccCcccCCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHH
Q 004761 235 PIPPYFRCPLSLELMIDPVIVASGQTYERVFIQKWLDHGLNICPKTRQTLAHTNLIPNYTVKAMIE 300 (732)
Q Consensus 235 ~~p~~f~Cpi~~~lm~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn~~l~~~i~ 300 (732)
...+++.||||++.|.|||+++|||+||+.||.+|+.. ..+||.|++++. ..+.||..+...++
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~-~~~~~~~~l~~~~~ 74 (81)
T 2csy_A 11 EEEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRA-TPRCYICDQPTG-GIFNPAKELMAKLQ 74 (81)
T ss_dssp CCCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHH-CSBCSSSCCBCC-SCCEECHHHHHHHS
T ss_pred cCCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHC-CCcCCCcCcccc-ccCCcHHHHHHHHH
Confidence 35678999999999999999999999999999999986 478999999996 67889966655543
|
| >2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.24 E-value=6.7e-12 Score=103.52 Aligned_cols=59 Identities=25% Similarity=0.423 Sum_probs=50.5
Q ss_pred CCCCCccccccCcccCCCceecC-CCcccchHHHHHHHhc-CCCCCCCCCCCCC-CCCCccc
Q 004761 234 VPIPPYFRCPLSLELMIDPVIVA-SGQTYERVFIQKWLDH-GLNICPKTRQTLA-HTNLIPN 292 (732)
Q Consensus 234 ~~~p~~f~Cpi~~~lm~dPV~~~-~g~ty~r~~I~~~~~~-~~~~cP~~~~~l~-~~~l~pn 292 (732)
..+++++.||||+++|.|||+++ |||+||+.||.+|+.. +..+||.|++++. ...+.+|
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n 71 (74)
T 2yur_A 10 DPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALSGP 71 (74)
T ss_dssp CCSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTTTTTCT
T ss_pred ccCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCccccccC
Confidence 45788999999999999999999 9999999999999985 3468999999854 3456666
|
| >1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 | Back alignment and structure |
|---|
Probab=99.20 E-value=7.7e-12 Score=111.92 Aligned_cols=69 Identities=19% Similarity=0.433 Sum_probs=60.7
Q ss_pred CCccccccCcccCCCceecCCCcccchHHHHHHHhcC--CCCCCCCCCCCCCCCCcccHHHHHHHHHHHHH
Q 004761 237 PPYFRCPLSLELMIDPVIVASGQTYERVFIQKWLDHG--LNICPKTRQTLAHTNLIPNYTVKAMIENWCEE 305 (732)
Q Consensus 237 p~~f~Cpi~~~lm~dPV~~~~g~ty~r~~I~~~~~~~--~~~cP~~~~~l~~~~l~pn~~l~~~i~~~~~~ 305 (732)
.+.+.||||++.|.|||+++|||+||+.||.+|+..+ ..+||.|++++....+.+|..+.++++.+...
T Consensus 19 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~~~~~~~~ 89 (112)
T 1jm7_A 19 QKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQLVEELLKI 89 (112)
T ss_dssp HHHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCCSSSHHHHHHHHH
T ss_pred cCCCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcCccHHHHHHHHHHHHH
Confidence 4568899999999999999999999999999999853 35899999999999999998888887777553
|
| >2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.19 E-value=1.6e-11 Score=100.59 Aligned_cols=58 Identities=21% Similarity=0.416 Sum_probs=52.3
Q ss_pred CCCCccccccCcccCCCceec-CCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccH
Q 004761 235 PIPPYFRCPLSLELMIDPVIV-ASGQTYERVFIQKWLDHGLNICPKTRQTLAHTNLIPNY 293 (732)
Q Consensus 235 ~~p~~f~Cpi~~~lm~dPV~~-~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn~ 293 (732)
.+.+++.||||++.|.|||++ +|||+||+.||.+|+... .+||.|++++...++.+|.
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~-~~CP~Cr~~~~~~~~~~~~ 69 (72)
T 2djb_A 11 ELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYS-NRCPKCNIVVHQTQPLSGP 69 (72)
T ss_dssp CCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHC-SSCTTTCCCCCSSCSCCCC
T ss_pred hcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcC-CcCCCcCcccCcccccccC
Confidence 467899999999999999997 999999999999999864 7899999999988887763
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=99.15 E-value=3.2e-09 Score=105.31 Aligned_cols=188 Identities=24% Similarity=0.256 Sum_probs=158.0
Q ss_pred CchHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCchHHH
Q 004761 444 TPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAM 523 (732)
Q Consensus 444 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k~~ 523 (732)
...++.|++.|+++++.++..|+..|..+.. .++++.|+.+|.++++.++..|+.+|.++..
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~------- 79 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------- 79 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC-------
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-------
Confidence 5568999999999999999999999987653 3679999999999999999999999988752
Q ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhccCchhH
Q 004761 524 IAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFHENK 603 (732)
Q Consensus 524 i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~n~ 603 (732)
.+.++.|+..|++.++.++..|+.+|..+.. .++++.|+.+|.+.++.++..|+.+|.++..
T Consensus 80 ---~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----- 141 (211)
T 3ltm_A 80 ---ERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD----- 141 (211)
T ss_dssp ---GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----
T ss_pred ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-----
Confidence 4578999999999999999999999987743 4688999999999999999999999998843
Q ss_pred HHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCChhhHHHHHHcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCh
Q 004761 604 ARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCLHSP 682 (732)
Q Consensus 604 ~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~~r~~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~ 682 (732)
..+++.|..++ +++..++..++.+|..+.. ..+++.|..++.++++.++..|+.+|..+..+..
T Consensus 142 -----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~~ 206 (211)
T 3ltm_A 142 -----ERAVEPLIKALKDEDGWVRQSAADALGEIGG----------ERVRAAMEKLAETGTGFARKVAVNYLETHKSFNH 206 (211)
T ss_dssp -----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS----------HHHHHHHHHHHHHCCHHHHHHHHHHHHC------
T ss_pred -----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCC
Confidence 35889999999 7888999999999998843 2357888899999999999999999998877543
|
| >2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.14 E-value=3.3e-11 Score=98.92 Aligned_cols=55 Identities=18% Similarity=0.480 Sum_probs=48.9
Q ss_pred CCCCccccccCcccCCCceecCCCcccchHHHHHHHhc--CCCCCCCCCCCCCCCCC
Q 004761 235 PIPPYFRCPLSLELMIDPVIVASGQTYERVFIQKWLDH--GLNICPKTRQTLAHTNL 289 (732)
Q Consensus 235 ~~p~~f~Cpi~~~lm~dPV~~~~g~ty~r~~I~~~~~~--~~~~cP~~~~~l~~~~l 289 (732)
.+++++.||||++.|.|||+++|||+||+.||.+|+.. +..+||.|++++...++
T Consensus 16 ~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~ 72 (73)
T 2ysl_A 16 KLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNAI 72 (73)
T ss_dssp CCCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCCC
T ss_pred hCccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcccC
Confidence 46789999999999999999999999999999999973 45789999999876554
|
| >3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.8e-11 Score=118.19 Aligned_cols=68 Identities=22% Similarity=0.443 Sum_probs=62.7
Q ss_pred CCCCccccccCcccCCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHH
Q 004761 235 PIPPYFRCPLSLELMIDPVIVASGQTYERVFIQKWLDHGLNICPKTRQTLAHTNLIPNYTVKAMIENW 302 (732)
Q Consensus 235 ~~p~~f~Cpi~~~lm~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn~~l~~~i~~~ 302 (732)
.++++|.||||+++|.|||+++|||+||+.||.+|+..+..+||.|+.++....+.||..+++.|..+
T Consensus 14 ~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~i~~l 81 (170)
T 3hcs_A 14 PLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSL 81 (170)
T ss_dssp CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTS
T ss_pred CCCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhhhhhHHHHHHHhhc
Confidence 57889999999999999999999999999999999987667999999999998999999999888753
|
| >1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1 | Back alignment and structure |
|---|
Probab=99.13 E-value=3.1e-11 Score=96.81 Aligned_cols=55 Identities=18% Similarity=0.317 Sum_probs=50.3
Q ss_pred CccccccCcc-cCCCc----eecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCccc
Q 004761 238 PYFRCPLSLE-LMIDP----VIVASGQTYERVFIQKWLDHGLNICPKTRQTLAHTNLIPN 292 (732)
Q Consensus 238 ~~f~Cpi~~~-lm~dP----V~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn 292 (732)
+++.||||++ .+.+| |+++|||+||+.||.+|+..+...||.|++++...++.|+
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~ 61 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFRVQ 61 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCCEEE
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccccceee
Confidence 5789999999 99999 5789999999999999998777889999999998888876
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=99.13 E-value=2.3e-09 Score=111.35 Aligned_cols=197 Identities=13% Similarity=0.044 Sum_probs=146.8
Q ss_pred CchHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCchHHH
Q 004761 444 TPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAM 523 (732)
Q Consensus 444 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k~~ 523 (732)
...++.|++.|.++++.++..|++.|..+.. .++++.|+.+|.++++.++..|+.+|.++.........
T Consensus 22 ~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~~ 90 (280)
T 1oyz_A 22 KLNDDELFRLLDDHNSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDN 90 (280)
T ss_dssp TSCHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHH
T ss_pred HhhHHHHHHHHHcCCHHHHHHHHHHHHccCC-----------chHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccchH
Confidence 3458999999999999999999999988762 24688899999999999999999999988644322111
Q ss_pred HHHcCCHHHHH-HHHcCCCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhccCchh
Q 004761 524 IAEAGAIEPLI-HVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFHEN 602 (732)
Q Consensus 524 i~~~g~l~~Lv-~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~n 602 (732)
.++.|. .++++.++.++..++.+|..+..... .....+++.|+.++.+.++.++..|+.+|.++..
T Consensus 91 -----l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~----~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~---- 157 (280)
T 1oyz_A 91 -----VFNILNNMALNDKSACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFDKSTNVRRATAFAISVIND---- 157 (280)
T ss_dssp -----HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC------
T ss_pred -----HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC----cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC----
Confidence 233333 24567788999999999988753211 0112467888888988889999999999887643
Q ss_pred HHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCChhhHHHHHHcCcHHHHHHHHhcCCHHHHHHHHHHHHHHh
Q 004761 603 KARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLC 678 (732)
Q Consensus 603 ~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~~r~~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~ 678 (732)
.++++.|+.++ +++..+...|+..|..+.... ..+++.|+.++.+.++.++..|+.+|..+.
T Consensus 158 ------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~--------~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~ 220 (280)
T 1oyz_A 158 ------KATIPLLINLLKDPNGDVRNWAAFAININKYDN--------SDIRDCFVEMLQDKNEEVRIEAIIGLSYRK 220 (280)
T ss_dssp -------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCC--------HHHHHHHHHHTTCSCHHHHHHHHHHHHHTT
T ss_pred ------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCc--------HHHHHHHHHHhcCCCHHHHHHHHHHHHHhC
Confidence 34788888888 777888888888888874321 124677888888888888888888887765
|
| >1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1 | Back alignment and structure |
|---|
Probab=99.12 E-value=1.6e-11 Score=110.63 Aligned_cols=66 Identities=20% Similarity=0.343 Sum_probs=56.3
Q ss_pred CCCccccccCcccCCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCc-ccHHHHHHHHH
Q 004761 236 IPPYFRCPLSLELMIDPVIVASGQTYERVFIQKWLDHGLNICPKTRQTLAHTNLI-PNYTVKAMIEN 301 (732)
Q Consensus 236 ~p~~f~Cpi~~~lm~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~-pn~~l~~~i~~ 301 (732)
++++|.||||+++|.|||+++|||+||+.||.+|+..++.+||.|++++...++. ++..+.+.+..
T Consensus 20 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~l~~~i~~ 86 (116)
T 1rmd_A 20 FVKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNILNS 86 (116)
T ss_dssp HHHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHHHHHH
T ss_pred ccCCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhccccHHHHHHHHHH
Confidence 3467899999999999999999999999999999998667999999999887765 45666666643
|
| >3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.11 E-value=9.1e-12 Score=115.99 Aligned_cols=66 Identities=14% Similarity=0.313 Sum_probs=57.1
Q ss_pred CCCCccccccCcccCCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCC---------CCCCcccHHHHHHHH
Q 004761 235 PIPPYFRCPLSLELMIDPVIVASGQTYERVFIQKWLDHGLNICPKTRQTLA---------HTNLIPNYTVKAMIE 300 (732)
Q Consensus 235 ~~p~~f~Cpi~~~lm~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~---------~~~l~pn~~l~~~i~ 300 (732)
.++++|.||||+++|.|||+++|||+||+.||.+|+..+..+||.|++++. ...+.|+..+++.|.
T Consensus 27 ~l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~l~~~~~~~d~~~~~~i~ 101 (141)
T 3knv_A 27 KLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIYEEGISILESSSAFPDNAARREVE 101 (141)
T ss_dssp GCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCCCTTTTEECGGGCEECHHHHHHHH
T ss_pred cCCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcCCCCCCCCCCcccccccccccchhhhcccHHHHHHHc
Confidence 467899999999999999999999999999999999887679999998753 235668888888775
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=99.10 E-value=4.4e-09 Score=104.30 Aligned_cols=189 Identities=22% Similarity=0.214 Sum_probs=157.8
Q ss_pred cCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHH
Q 004761 486 CGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKI 565 (732)
Q Consensus 486 ~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i 565 (732)
.+.++.|+.+|.++++.++..|+.+|..+.. .++++.|+..|.++++.++..|+.+|..+.
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~--------- 78 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIG--------- 78 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHC---------
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhC---------
Confidence 4679999999999999999999999987642 467999999999999999999999998764
Q ss_pred HhcchHHHHHHhhcCCCHHHHHHHHHHHHHhccCchhHHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCChhhHH
Q 004761 566 GRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFHENKARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGEGRL 644 (732)
Q Consensus 566 ~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~n~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~~r~ 644 (732)
..++++.|+.+|.+.++.++..|+.+|..+.. .++++.|+.++ +++..++..|+.+|..+..
T Consensus 79 -~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~------ 141 (211)
T 3ltm_A 79 -DERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD------ 141 (211)
T ss_dssp -CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC------
T ss_pred -CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC------
Confidence 24688999999999999999999999998753 36889999999 8888999999999998843
Q ss_pred HHHHcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHhhcccc
Q 004761 645 AIAREGGIPSLVEVVESGSQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFRNQRE 724 (732)
Q Consensus 645 ~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~~~~ 724 (732)
...++.|..++.+.++.++..|+.+|..+.. ..+++.|..+++++++.++..|...|..+.....
T Consensus 142 ----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~~ 206 (211)
T 3ltm_A 142 ----ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLETHKSFNH 206 (211)
T ss_dssp ----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCCHHHHHHHHHHHHC------
T ss_pred ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCC
Confidence 2478999999999999999999999998853 2357789999999999999999999998876644
Q ss_pred C
Q 004761 725 G 725 (732)
Q Consensus 725 ~ 725 (732)
+
T Consensus 207 ~ 207 (211)
T 3ltm_A 207 H 207 (211)
T ss_dssp -
T ss_pred C
Confidence 3
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=99.07 E-value=8e-09 Score=101.61 Aligned_cols=184 Identities=25% Similarity=0.265 Sum_probs=157.3
Q ss_pred CchHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCchHHH
Q 004761 444 TPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAM 523 (732)
Q Consensus 444 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k~~ 523 (732)
.+..+.+++.|.++++.++..|+..|..+.. .++++.|+.+|.++++.++..|+.+|..+..
T Consensus 13 ~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~------- 74 (201)
T 3ltj_A 13 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------- 74 (201)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-------
T ss_pred CcchHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-------
Confidence 4557899999999999999999999987653 2578999999999999999999999987742
Q ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhccCchhH
Q 004761 524 IAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFHENK 603 (732)
Q Consensus 524 i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~n~ 603 (732)
...++.|+..|.+.++.++..|+.+|..+.. ..+++.|+.+|.+.++.++..|+.+|.++..
T Consensus 75 ---~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----- 136 (201)
T 3ltj_A 75 ---ERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD----- 136 (201)
T ss_dssp ---GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC-----
T ss_pred ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----
Confidence 3578999999999999999999999987643 3588999999999999999999999988743
Q ss_pred HHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCChhhHHHHHHcCcHHHHHHHHhcCCHHHHHHHHHHHHHHh
Q 004761 604 ARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLC 678 (732)
Q Consensus 604 ~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~~r~~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~ 678 (732)
.++++.|..++ +++..++..|+.+|..+.. ..+++.|..++.+.++.++..|+.+|..+-
T Consensus 137 -----~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 137 -----ERAVEPLIKALKDEDGWVRQSAADALGEIGG----------ERVRAAMEKLAETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp -----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS----------HHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred -----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------hhHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 46889999999 7788999999999998832 236788888999999999999999988754
|
| >2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.07 E-value=9.5e-11 Score=93.28 Aligned_cols=46 Identities=22% Similarity=0.508 Sum_probs=41.9
Q ss_pred CCCCccccccCcccCCCceecCCCcccchHHHHHHHhc--CCCCCCCC
Q 004761 235 PIPPYFRCPLSLELMIDPVIVASGQTYERVFIQKWLDH--GLNICPKT 280 (732)
Q Consensus 235 ~~p~~f~Cpi~~~lm~dPV~~~~g~ty~r~~I~~~~~~--~~~~cP~~ 280 (732)
.+.+++.||||++.|.|||+++|||+||+.||.+|+.. +..+||.|
T Consensus 16 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 16 KLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred hCccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 46789999999999999999999999999999999985 45689987
|
| >3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.06 E-value=5.5e-11 Score=97.00 Aligned_cols=58 Identities=21% Similarity=0.454 Sum_probs=52.4
Q ss_pred CCCCccccccCcccCCCc-------eecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccH
Q 004761 235 PIPPYFRCPLSLELMIDP-------VIVASGQTYERVFIQKWLDHGLNICPKTRQTLAHTNLIPNY 293 (732)
Q Consensus 235 ~~p~~f~Cpi~~~lm~dP-------V~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn~ 293 (732)
...+++.||||++.|.+| ++++|||+||+.||.+|+... .+||.|++++...++.|++
T Consensus 6 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~~~~~~~~~ 70 (71)
T 3ng2_A 6 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA-NTCPTCRKKINHKRYHPIY 70 (71)
T ss_dssp CCTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHC-SBCTTTCCBCCCCSCCCCC
T ss_pred CCCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcC-CCCCCCCCccChhheeecc
Confidence 356789999999999999 899999999999999999876 6999999999988888864
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=99.04 E-value=7.1e-09 Score=101.97 Aligned_cols=184 Identities=22% Similarity=0.224 Sum_probs=157.0
Q ss_pred CCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHH
Q 004761 487 GAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIG 566 (732)
Q Consensus 487 G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~ 566 (732)
+..+.++.+|.++++.++..|+.+|..+.. .+.++.|+..|.++++.++..|+.+|..+.
T Consensus 14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~---------- 73 (201)
T 3ltj_A 14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIG---------- 73 (201)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC----------
T ss_pred cchHHHHHHhcCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhC----------
Confidence 567889999999999999999999987652 357899999999999999999999998764
Q ss_pred hcchHHHHHHhhcCCCHHHHHHHHHHHHHhccCchhHHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCChhhHHH
Q 004761 567 RSGAVKALVDLLGSGTLRGRKDAATALFNLSIFHENKARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGEGRLA 645 (732)
Q Consensus 567 ~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~n~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~~r~~ 645 (732)
...+++.|+.+|.+.++.++..|+.+|.++.. ..+++.|+.++ +++..++..|+.+|+.+..
T Consensus 74 ~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~------- 136 (201)
T 3ltj_A 74 DERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD------- 136 (201)
T ss_dssp CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC-------
T ss_pred CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-------
Confidence 23688999999999999999999999988743 35888999999 7888999999999998743
Q ss_pred HHHcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHhhc
Q 004761 646 IAREGGIPSLVEVVESGSQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFRN 721 (732)
Q Consensus 646 i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~ 721 (732)
...++.|..++.+.++.++..|+.+|..+.. + .+++.|..+++++++.++..|...|..+..
T Consensus 137 ---~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~--~---------~~~~~L~~~l~d~~~~vr~~A~~aL~~l~~ 198 (201)
T 3ltj_A 137 ---ERAVEPLIKALKDEDGWVRQSAADALGEIGG--E---------RVRAAMEKLAETGTGFARKVAVNYLETHKS 198 (201)
T ss_dssp ---GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS--H---------HHHHHHHHHHHHCCHHHHHHHHHHHHHCC-
T ss_pred ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--h---------hHHHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 3578899999999999999999999998832 2 257788889999999999999999988754
|
| >2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.96 E-value=4.3e-10 Score=87.73 Aligned_cols=46 Identities=24% Similarity=0.577 Sum_probs=41.6
Q ss_pred CCCCccccccCcccCCCceecCCCcccchHHHHHHHhc--CCCCCCCC
Q 004761 235 PIPPYFRCPLSLELMIDPVIVASGQTYERVFIQKWLDH--GLNICPKT 280 (732)
Q Consensus 235 ~~p~~f~Cpi~~~lm~dPV~~~~g~ty~r~~I~~~~~~--~~~~cP~~ 280 (732)
.+.+++.||||++.+.+||+++|||+||+.||.+|+.. +..+||.|
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 11 NLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CSCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 46688999999999999999999999999999999865 56789987
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* | Back alignment and structure |
|---|
Probab=98.96 E-value=5.2e-09 Score=126.11 Aligned_cols=279 Identities=13% Similarity=0.078 Sum_probs=190.5
Q ss_pred ccCchHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHH----hcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcC
Q 004761 442 TTTPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIG----NCGAIPPLLSLLYSEAQLTQEHAVTALLNLSIN 517 (732)
Q Consensus 442 ~~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~----~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~ 517 (732)
.|.+.++.|++.+.++++..+..|+.+|..+++..+.....-. -.+.++.|+.++.+.++.++..|+.+|.++...
T Consensus 125 ~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~ 204 (852)
T 4fdd_A 125 NWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIIS 204 (852)
T ss_dssp TCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTT
T ss_pred ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhc
Confidence 3567899999999999999999999999999865433211000 123567777888888999999999999877644
Q ss_pred CchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHHh--cchHHHHHHhhcCCCHHHHHHHHHHHHH
Q 004761 518 DENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGR--SGAVKALVDLLGSGTLRGRKDAATALFN 595 (732)
Q Consensus 518 ~~~k~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~--~g~i~~Lv~lL~~~~~~~~~~Al~aL~n 595 (732)
......-.-.+.++.++..+.+++++++..|+.+|..++.... ..+.. .++++.++.++++.++.++..|+.++.+
T Consensus 205 ~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~--~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~ 282 (852)
T 4fdd_A 205 RTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRM--DRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLT 282 (852)
T ss_dssp TCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCH--HHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCH--HHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHH
Confidence 2221111113567888888888999999999999998876322 12221 2577888888888888888888888777
Q ss_pred hccCchhHH-------H------------------------------------------------HH---hh----chHH
Q 004761 596 LSIFHENKA-------R------------------------------------------------II---QA----GAVK 613 (732)
Q Consensus 596 Ls~~~~n~~-------~------------------------------------------------lv---~~----G~V~ 613 (732)
++.....+. . +. .. .+++
T Consensus 283 l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~~~~~l~~ 362 (852)
T 4fdd_A 283 LAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHILP 362 (852)
T ss_dssp HTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGGGGHHHHHH
T ss_pred HhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 764321100 0 00 01 1333
Q ss_pred HHHHhc-CCChHHHHHHHHHHHHHhCChhhHHHHHHcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHhHHHHHhCC
Q 004761 614 HLVDLM-DPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCLHSPKFCTLVLQEG 692 (732)
Q Consensus 614 ~Ll~lL-~~~~~l~e~al~iL~nLa~~~~~r~~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~v~~~G 692 (732)
.+.+++ +.+..+++.|+.+|++++........-.-.+.++.++..+.+.++.++..|+++|.+++...+.......-.+
T Consensus 363 ~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ 442 (852)
T 4fdd_A 363 LLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKP 442 (852)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 344444 5677788888888888887553211111134678888889889999999999999998873221100111125
Q ss_pred CHHHHHHchhcCChHHHHHHHHHHHHhhcc
Q 004761 693 AVPPLVGLSQSGTPRAKEKAQQLLSHFRNQ 722 (732)
Q Consensus 693 ~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~~ 722 (732)
+++.|+..+.+++++++..|..+|..+.+.
T Consensus 443 ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~ 472 (852)
T 4fdd_A 443 LMTELLKRILDSNKRVQEAACSAFATLEEE 472 (852)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 678888889888999999999999888653
|
| >2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.96 E-value=6.5e-10 Score=94.66 Aligned_cols=54 Identities=22% Similarity=0.404 Sum_probs=47.9
Q ss_pred CCCCCccccccCcccCCC----ceecCCCcccchHHHHHHHhcC--CCCCCCCCCCCCCC
Q 004761 234 VPIPPYFRCPLSLELMID----PVIVASGQTYERVFIQKWLDHG--LNICPKTRQTLAHT 287 (732)
Q Consensus 234 ~~~p~~f~Cpi~~~lm~d----PV~~~~g~ty~r~~I~~~~~~~--~~~cP~~~~~l~~~ 287 (732)
..+.+++.||||++.|.+ |++++|||+||+.||.+|+... ..+||.|++++...
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 10 DALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp CCCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred hhccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 346788999999999999 9999999999999999999864 47899999987654
|
| >2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.96 E-value=2.9e-10 Score=92.81 Aligned_cols=51 Identities=16% Similarity=0.274 Sum_probs=46.1
Q ss_pred CCCccccccCcccCCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCC
Q 004761 236 IPPYFRCPLSLELMIDPVIVASGQTYERVFIQKWLDHGLNICPKTRQTLAHT 287 (732)
Q Consensus 236 ~p~~f~Cpi~~~lm~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~ 287 (732)
..+++.||||++.|.|||+++|||+||+.||.+|+..+ .+||.|++++...
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~-~~CP~Cr~~~~~~ 62 (71)
T 2d8t_A 12 SLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWLG-KRCALCRQEIPED 62 (71)
T ss_dssp SSSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTCS-SBCSSSCCBCCHH
T ss_pred CCCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHCC-CcCcCcCchhCHh
Confidence 45789999999999999999999999999999999876 7899999987643
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=98.95 E-value=4.6e-08 Score=101.39 Aligned_cols=199 Identities=14% Similarity=0.039 Sum_probs=153.5
Q ss_pred HhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHH
Q 004761 484 GNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKA 563 (732)
Q Consensus 484 ~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~ 563 (732)
...+.++.|+..|.++++.++..|+.+|.++. ..+.++.|+.+|.++++.++..|+.+|..+........
T Consensus 20 ~~~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~----------~~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~ 89 (280)
T 1oyz_A 20 CKKLNDDELFRLLDDHNSLKRISSARVLQLRG----------GQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCED 89 (280)
T ss_dssp HHTSCHHHHHHHTTCSSHHHHHHHHHHHHHHC----------CHHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHH
T ss_pred HHHhhHHHHHHHHHcCCHHHHHHHHHHHHccC----------CchHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccch
Confidence 34578999999999999999999999999886 13468899999999999999999999998864332111
Q ss_pred HHHhcchHHHHHH-hhcCCCHHHHHHHHHHHHHhccCchhHHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCChh
Q 004761 564 KIGRSGAVKALVD-LLGSGTLRGRKDAATALFNLSIFHENKARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGE 641 (732)
Q Consensus 564 ~i~~~g~i~~Lv~-lL~~~~~~~~~~Al~aL~nLs~~~~n~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~ 641 (732)
..++.|.+ ++.+.++.++..|+.+|.++...... ....+++.|+.++ +++..++..|+..|.++..
T Consensus 90 -----~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~----~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~--- 157 (280)
T 1oyz_A 90 -----NVFNILNNMALNDKSACVRATAIESTAQRCKKNPI----YSPKIVEQSQITAFDKSTNVRRATAFAISVIND--- 157 (280)
T ss_dssp -----HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGG----GHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-----
T ss_pred -----HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCc----ccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC---
Confidence 13344442 45778899999999999998643211 1235788899999 8888999999999887643
Q ss_pred hHHHHHHcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHhh
Q 004761 642 GRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFR 720 (732)
Q Consensus 642 ~r~~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~ 720 (732)
..+++.|+.++.+.++.++..|+++|..+...++ .+++.|..+++++++.++..|...|..+.
T Consensus 158 -------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~l~d~~~~vR~~A~~aL~~~~ 220 (280)
T 1oyz_A 158 -------KATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDKNEEVRIEAIIGLSYRK 220 (280)
T ss_dssp --------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCSCHHHHHHHHHHHHHTT
T ss_pred -------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH---------HHHHHHHHHhcCCCHHHHHHHHHHHHHhC
Confidence 3589999999999999999999999998864333 24567777777777888888887777664
|
| >2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.93 E-value=2.1e-10 Score=91.37 Aligned_cols=55 Identities=22% Similarity=0.509 Sum_probs=49.3
Q ss_pred CccccccCcccCCCc-------eecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccH
Q 004761 238 PYFRCPLSLELMIDP-------VIVASGQTYERVFIQKWLDHGLNICPKTRQTLAHTNLIPNY 293 (732)
Q Consensus 238 ~~f~Cpi~~~lm~dP-------V~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn~ 293 (732)
+++.||||++.+.+| ++++|||+|++.||.+|+.. +.+||.|++++...++.|++
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~~ 63 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPIY 63 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH-CSBCTTTCCBCTTTCEEECC
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc-CCCCCCCCccCCccceeeee
Confidence 468899999999998 88999999999999999987 47999999999988887753
|
| >1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B | Back alignment and structure |
|---|
Probab=98.89 E-value=1.5e-09 Score=89.92 Aligned_cols=55 Identities=18% Similarity=0.294 Sum_probs=47.6
Q ss_pred CCCCccccccCcccC--CCceecC--CCcccchHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 004761 235 PIPPYFRCPLSLELM--IDPVIVA--SGQTYERVFIQKWLDHGLNICPKTRQTLAHTNL 289 (732)
Q Consensus 235 ~~p~~f~Cpi~~~lm--~dPV~~~--~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l 289 (732)
...+++.||||++.+ .||++.+ |||+||+.||.+|+..+...||.||+++....+
T Consensus 7 ~~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~ 65 (78)
T 1e4u_A 7 AKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPA 65 (78)
T ss_dssp CCCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSS
T ss_pred ccccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCch
Confidence 456889999999999 5777776 999999999999998777899999999876554
|
| >2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.87 E-value=1.1e-09 Score=88.69 Aligned_cols=51 Identities=20% Similarity=0.434 Sum_probs=46.1
Q ss_pred CCCCccccccCcccCCCc-------eecCCCcccchHHHHHHHhcCCCCCCCCCCCCCC
Q 004761 235 PIPPYFRCPLSLELMIDP-------VIVASGQTYERVFIQKWLDHGLNICPKTRQTLAH 286 (732)
Q Consensus 235 ~~p~~f~Cpi~~~lm~dP-------V~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~ 286 (732)
..++++.||||++.|.+| ++++|||+|++.||.+|+.. +.+||.|++++..
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 11 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 68 (69)
T ss_dssp CTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH-CSSCTTTCCCCCC
T ss_pred CCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc-CCCCCCCCCccCc
Confidence 467899999999999999 88999999999999999987 4799999998764
|
| >2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=98.85 E-value=2e-09 Score=89.42 Aligned_cols=57 Identities=21% Similarity=0.408 Sum_probs=49.5
Q ss_pred CCCCccccccCcccCCCc---eecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCccc
Q 004761 235 PIPPYFRCPLSLELMIDP---VIVASGQTYERVFIQKWLDHGLNICPKTRQTLAHTNLIPN 292 (732)
Q Consensus 235 ~~p~~f~Cpi~~~lm~dP---V~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn 292 (732)
...+++.||||++.|.+| ++++|||+|++.||.+|+... .+||.|++++....+.+|
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~-~~CP~Cr~~~~~~~~~~~ 70 (78)
T 2ect_A 11 HVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQH-DSCPVCRKSLTGQNTATN 70 (78)
T ss_dssp TSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTT-CSCTTTCCCCCCSCSCCC
T ss_pred cCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcC-CcCcCcCCccCCcccCCC
Confidence 345789999999999987 446999999999999999765 799999999988887776
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* | Back alignment and structure |
|---|
Probab=98.77 E-value=5.1e-08 Score=117.46 Aligned_cols=271 Identities=13% Similarity=0.038 Sum_probs=185.4
Q ss_pred chHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCchHHHH
Q 004761 445 PYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAMI 524 (732)
Q Consensus 445 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k~~i 524 (732)
..++.+++.+.+++++++..|+.+|..++...+..-.... .+.++.++..+.+.+..++..|+..+.+++.....+..+
T Consensus 215 ~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l-~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~ 293 (852)
T 4fdd_A 215 SFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHM-HNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVL 293 (852)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHH-HHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHH
Confidence 4578888888899999999999999999977654321111 146778888888889999999999999988654333322
Q ss_pred H--HcCCHHHHHHHH-----------cC-----------CCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcC
Q 004761 525 A--EAGAIEPLIHVL-----------KS-----------GNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGS 580 (732)
Q Consensus 525 ~--~~g~l~~Lv~lL-----------~~-----------~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~ 580 (732)
. -...++.++..+ .+ .+..++..|+.+|..|+..... .+ -..+++.+..++.+
T Consensus 294 ~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~--~~-~~~l~~~l~~~l~~ 370 (852)
T 4fdd_A 294 VRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRD--EL-LPHILPLLKELLFH 370 (852)
T ss_dssp TTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGG--GG-HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccH--HH-HHHHHHHHHHHhcC
Confidence 1 112344455554 22 1223578888888888753211 11 12467888888888
Q ss_pred CCHHHHHHHHHHHHHhccCchhHHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCChhhH-HHHHHcCcHHHHHHH
Q 004761 581 GTLRGRKDAATALFNLSIFHENKARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGEGR-LAIAREGGIPSLVEV 658 (732)
Q Consensus 581 ~~~~~~~~Al~aL~nLs~~~~n~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~~r-~~i~~~~~I~~Lv~l 658 (732)
.+...++.|+.+|.+++........-.-.++++.++.++ +++..++..++.+|.+++..-... ....-.+.++.|++.
T Consensus 371 ~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~ 450 (852)
T 4fdd_A 371 HEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKR 450 (852)
T ss_dssp SSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 899999999999999998665322223367889999999 888999999999999988632110 000112357888888
Q ss_pred HhcCCHHHHHHHHHHHHHHhcCChHhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHhh
Q 004761 659 VESGSQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFR 720 (732)
Q Consensus 659 L~~~s~~~~e~A~~~L~~L~~~~~~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~ 720 (732)
+.+.++.+++.|+++|.++|...+....... .++++.|+.+++....+....+..++..+.
T Consensus 451 L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l-~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~ 511 (852)
T 4fdd_A 451 ILDSNKRVQEAACSAFATLEEEACTELVPYL-AYILDTLVFAFSKYQHKNLLILYDAIGTLA 511 (852)
T ss_dssp HTCSSHHHHHHHHHHHHHHHHHHGGGGGGGH-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHHhhHhhHhHH-HHHHHHHHHHHHHhChHHHHHHHHHHHHHH
Confidence 8888999999999999999974322111111 356778888887766665555555555543
|
| >1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1 | Back alignment and structure |
|---|
Probab=98.72 E-value=7.2e-09 Score=83.55 Aligned_cols=48 Identities=21% Similarity=0.442 Sum_probs=42.8
Q ss_pred CccccccCcccCCCc-eecCCCcccchHHHHHHHhcCCCCCCCCCCCCCC
Q 004761 238 PYFRCPLSLELMIDP-VIVASGQTYERVFIQKWLDHGLNICPKTRQTLAH 286 (732)
Q Consensus 238 ~~f~Cpi~~~lm~dP-V~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~ 286 (732)
++..||||++.+.+| ++++|||+||+.||.+|+..+ .+||.|++++..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~-~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQN-PTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHS-CSTTTTCCCCCC
T ss_pred CCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCc-CcCcCCChhhHh
Confidence 567899999999998 678999999999999999865 799999998753
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A | Back alignment and structure |
|---|
Probab=98.71 E-value=6.2e-07 Score=102.36 Aligned_cols=264 Identities=11% Similarity=0.068 Sum_probs=184.8
Q ss_pred CchHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCchHHH
Q 004761 444 TPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAM 523 (732)
Q Consensus 444 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k~~ 523 (732)
...++.|...+.+.++.++..|+..|..++...+.. . ...-.++.+..+..+++...+..|+.+|..+...-...
T Consensus 86 ~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~--~-~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~-- 160 (588)
T 1b3u_A 86 HCLLPPLESLATVEETVVRDKAVESLRAISHEHSPS--D-LEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSA-- 160 (588)
T ss_dssp GGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHH--H-HHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHH--
T ss_pred HHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHH--H-HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHH--
Confidence 345666667677788999999999999998765432 1 22235667777777888999999999998886542221
Q ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhccCchhH
Q 004761 524 IAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFHENK 603 (732)
Q Consensus 524 i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~n~ 603 (732)
.....++.+..++++.++.+|..|+.+|..++..-... ......+|.+..++.+.+..++..|+.+|..++..-+.
T Consensus 161 -~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~- 236 (588)
T 1b3u_A 161 -VKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELD--NVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQ- 236 (588)
T ss_dssp -HHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHH--HHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCH-
T ss_pred -HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHH--hHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCH-
Confidence 12345777778888889999999999999987543222 12346789999999999999999999999988764221
Q ss_pred HHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCChhhHHHHHHcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCh
Q 004761 604 ARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCLHSP 682 (732)
Q Consensus 604 ~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~~r~~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~ 682 (732)
......+++.+..++ +++..++..++.+|..++..... .......++.+.+++...++.++..|+.+|..++..-+
T Consensus 237 -~~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~ 313 (588)
T 1b3u_A 237 -EDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP--EITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLS 313 (588)
T ss_dssp -HHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH--HHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSC
T ss_pred -HHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc--ccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhC
Confidence 123345777788888 77788999999999998763211 12233568899999998999999999999999987432
Q ss_pred -HhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHh
Q 004761 683 -KFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHF 719 (732)
Q Consensus 683 -~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l 719 (732)
+......-..++|.+..++++.++.+|+.|..+|..+
T Consensus 314 ~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l 351 (588)
T 1b3u_A 314 ADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGL 351 (588)
T ss_dssp TTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGG
T ss_pred hhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 2111111233556666666666666666665554443
|
| >4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.71 E-value=4e-09 Score=96.96 Aligned_cols=55 Identities=20% Similarity=0.452 Sum_probs=50.2
Q ss_pred CCccccccCcccCCCc-------eecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCccc
Q 004761 237 PPYFRCPLSLELMIDP-------VIVASGQTYERVFIQKWLDHGLNICPKTRQTLAHTNLIPN 292 (732)
Q Consensus 237 p~~f~Cpi~~~lm~dP-------V~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn 292 (732)
++++.||||++.|.+| |+++|||+||+.||.+|+... .+||.|++++....+.++
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~~~~l~~l 66 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA-NTCPTCRKKINHKRYHPI 66 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTC-SBCTTTCCBCTTTCEEEC
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhC-CCCCCCCCcCcccccccc
Confidence 6789999999999999 999999999999999999875 699999999988777765
|
| >4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A | Back alignment and structure |
|---|
Probab=98.70 E-value=1.7e-07 Score=109.95 Aligned_cols=192 Identities=17% Similarity=0.143 Sum_probs=150.3
Q ss_pred cCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHH-HhhcCCCHHHHHHHHHHHHHhccC--chhH
Q 004761 527 AGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALV-DLLGSGTLRGRKDAATALFNLSIF--HENK 603 (732)
Q Consensus 527 ~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv-~lL~~~~~~~~~~Al~aL~nLs~~--~~n~ 603 (732)
.+.+.|+++.|++++++.|..|+++|.+|+.+...+..+...|++..++ .+|.+.+..++..|+.+|.||+.. .+.+
T Consensus 33 ~~~i~Pll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~ 112 (684)
T 4gmo_A 33 EDKILPVLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFC 112 (684)
T ss_dssp HHTTHHHHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred hhhHHHHHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHH
Confidence 3457778888999999999999999999998888888888888887754 578888999999999999999975 4688
Q ss_pred HHHHhhchHHHHHHhc-CC--------------C-------hHHHHHHHHHHHHHhCCh-hhHHHHHHcCcHHHHHHHHh
Q 004761 604 ARIIQAGAVKHLVDLM-DP--------------S-------TGMVDKAVALLANLSTVG-EGRLAIAREGGIPSLVEVVE 660 (732)
Q Consensus 604 ~~lv~~G~V~~Ll~lL-~~--------------~-------~~l~e~al~iL~nLa~~~-~~r~~i~~~~~I~~Lv~lL~ 660 (732)
..+++.|++++|..++ .. . ..+.+.++.+|++||... +....+...++++.|+..|.
T Consensus 113 ~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~ 192 (684)
T 4gmo_A 113 VHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLI 192 (684)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHH
Confidence 8999999999999987 10 0 124567889999998754 45567777888999999874
Q ss_pred c---CCHHHHHHHHHHHHHHhcCChHhHHHHHhCCCH---HHHHHchhcCChHHHHHHHHHHHHh
Q 004761 661 S---GSQRGKENAASILLQLCLHSPKFCTLVLQEGAV---PPLVGLSQSGTPRAKEKAQQLLSHF 719 (732)
Q Consensus 661 ~---~s~~~~e~A~~~L~~L~~~~~~~~~~v~~~G~i---~~L~~Ll~~g~~~~k~kA~~lL~~l 719 (732)
+ ........|+.+|+.++..++.....+.+.|.. ..|..+..+.++ .+.-+..+|.++
T Consensus 193 ~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~~~~-~~~la~giL~Ni 256 (684)
T 4gmo_A 193 SADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATGTDP-RAVMACGVLHNV 256 (684)
T ss_dssp HHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHSSCT-THHHHHHHHHHH
T ss_pred hcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcCCcH-HHHHHHHHHHhH
Confidence 3 246789999999999999999998888887753 334443444433 345666777665
|
| >2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A | Back alignment and structure |
|---|
Probab=98.70 E-value=9.7e-09 Score=79.01 Aligned_cols=47 Identities=21% Similarity=0.400 Sum_probs=42.5
Q ss_pred CccccccCcccCCC----ceecCCCcccchHHHHHHHhcCCCCCCCCCCCCC
Q 004761 238 PYFRCPLSLELMID----PVIVASGQTYERVFIQKWLDHGLNICPKTRQTLA 285 (732)
Q Consensus 238 ~~f~Cpi~~~lm~d----PV~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~ 285 (732)
+++.||||++.+.+ |++++|||+|++.||.+|+..+ .+||.|++++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG-YRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT-CCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC-CcCCCCCCcCC
Confidence 56789999999977 8889999999999999999987 89999998874
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A | Back alignment and structure |
|---|
Probab=98.69 E-value=4.7e-07 Score=103.36 Aligned_cols=266 Identities=11% Similarity=0.058 Sum_probs=182.9
Q ss_pred chHHHHHHHhcCCCHHHHHHHHHHHHHHhccChh-hHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCchHHH
Q 004761 445 PYVKKLIEDLNSTSNEIQASAAAELRLLAKHNME-NRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAM 523 (732)
Q Consensus 445 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~-~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k~~ 523 (732)
..++.+++.++..+++++..|+..|..++..... .+....-...+|.+..++.+.+..++..++.+|..++..-.. .
T Consensus 281 ~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~--~ 358 (588)
T 1b3u_A 281 DLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGK--D 358 (588)
T ss_dssp THHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCH--H
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhH--h
Confidence 4578888999999999999999999988865322 121112235678888999999999999999999888632111 1
Q ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhccCchhH
Q 004761 524 IAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFHENK 603 (732)
Q Consensus 524 i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~n~ 603 (732)
......++.+..++++.++++|..++.+|..+...-... . .....+|.+..++.+.+.+++..++.+|..++..-+..
T Consensus 359 ~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~-~-~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~ 436 (588)
T 1b3u_A 359 NTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIR-Q-LSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVE 436 (588)
T ss_dssp HHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHH-H-HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHH-H-HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHH
Confidence 122346788889998888999999888887765421111 1 12357788888888888888988888888886421111
Q ss_pred HHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCChhhHHHHHHcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCh
Q 004761 604 ARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCLHSP 682 (732)
Q Consensus 604 ~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~~r~~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~ 682 (732)
.....+++.++.++ +.+..+++.|+.+|..++..-... ......++.|..++.+.+...+..++.++..++..-+
T Consensus 437 --~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~--~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~ 512 (588)
T 1b3u_A 437 --FFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKE--WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCG 512 (588)
T ss_dssp --GCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH--HHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCch--hHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcC
Confidence 12234678888888 777888888888888886532221 1122456777777777778888888888887776311
Q ss_pred HhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHhhc
Q 004761 683 KFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFRN 721 (732)
Q Consensus 683 ~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~ 721 (732)
. ......+++.|..++.+.++.+|..|..+|..+..
T Consensus 513 ~---~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~ 548 (588)
T 1b3u_A 513 Q---DITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGP 548 (588)
T ss_dssp H---HHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGG
T ss_pred H---HHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHH
Confidence 1 12233577788888877778888888777776654
|
| >2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.68 E-value=3.6e-09 Score=85.94 Aligned_cols=52 Identities=21% Similarity=0.448 Sum_probs=46.3
Q ss_pred CCCCccccccCcccCCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCC
Q 004761 235 PIPPYFRCPLSLELMIDPVIVASGQTYERVFIQKWLDHGLNICPKTRQTLAHTN 288 (732)
Q Consensus 235 ~~p~~f~Cpi~~~lm~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~ 288 (732)
...+++.||||++.+.+ |+++|||+||+.||.+|+.. +.+||.|++++...+
T Consensus 11 ~~~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 11 QLTDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSDR-HRNCPICRLQMTGAN 62 (70)
T ss_dssp CCCCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSCC-CSSCHHHHHCTTCCC
T ss_pred cCCCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHHC-cCcCCCcCCcccCCC
Confidence 45678999999999999 99999999999999999984 579999999887544
|
| >1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1 | Back alignment and structure |
|---|
Probab=98.68 E-value=5.2e-09 Score=81.03 Aligned_cols=46 Identities=13% Similarity=0.132 Sum_probs=40.9
Q ss_pred CCccccccCcccCCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCC
Q 004761 237 PPYFRCPLSLELMIDPVIVASGQTYERVFIQKWLDHGLNICPKTRQTLAH 286 (732)
Q Consensus 237 p~~f~Cpi~~~lm~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~ 286 (732)
.+++.||||++.+.|||+++|||+||+.||.+| ...||.|++++..
T Consensus 4 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~----~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS----GMQCPICQAPWPL 49 (56)
T ss_dssp CCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS----SSSCSSCCSSSSC
T ss_pred ccCCCceEeCCccCCeEEcCCCCcccHHHHccC----CCCCCcCCcEeec
Confidence 467899999999999999999999999999873 4689999998754
|
| >4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A | Back alignment and structure |
|---|
Probab=98.65 E-value=2.2e-07 Score=109.03 Aligned_cols=192 Identities=15% Similarity=0.157 Sum_probs=147.6
Q ss_pred CCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHH-HHHcCCCHHHHHHHHHHHHHhccC--chhHH
Q 004761 487 GAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAMIAEAGAIEPLI-HVLKSGNGGAKENSAAALFSLSVL--EEYKA 563 (732)
Q Consensus 487 G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k~~i~~~g~l~~Lv-~lL~~~~~e~~~~Aa~~L~~Ls~~--~~~k~ 563 (732)
+.|.+++..|+++++..+..|+.+|.||+.++..+..+...|++.+++ .+|.+.+.+++..|+++|.||+.. .+.+.
T Consensus 34 ~~i~Pll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~ 113 (684)
T 4gmo_A 34 DKILPVLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCV 113 (684)
T ss_dssp HTTHHHHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred hhHHHHHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHH
Confidence 346667788999999999999999999998888889999999998866 578888999999999999999875 35677
Q ss_pred HHHhcchHHHHHHhhcCCC---------------------HHHHHHHHHHHHHhccCc-hhHHHHHhhchHHHHHHhc--
Q 004761 564 KIGRSGAVKALVDLLGSGT---------------------LRGRKDAATALFNLSIFH-ENKARIIQAGAVKHLVDLM-- 619 (732)
Q Consensus 564 ~i~~~g~i~~Lv~lL~~~~---------------------~~~~~~Al~aL~nLs~~~-~n~~~lv~~G~V~~Ll~lL-- 619 (732)
.+.+.|++++|..+++... ......++.+|++||... +....+...|+++.|+.+|
T Consensus 114 ~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~ 193 (684)
T 4gmo_A 114 HLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLIS 193 (684)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHh
Confidence 8889999999999886311 123446788999998754 4556788899999999998
Q ss_pred -C-CChHHHHHHHHHHHHHhCCh-hhHHHHHHcCc---HHHHHHHHhcCCHHHHHHHHHHHHHHhc
Q 004761 620 -D-PSTGMVDKAVALLANLSTVG-EGRLAIAREGG---IPSLVEVVESGSQRGKENAASILLQLCL 679 (732)
Q Consensus 620 -~-~~~~l~e~al~iL~nLa~~~-~~r~~i~~~~~---I~~Lv~lL~~~s~~~~e~A~~~L~~L~~ 679 (732)
+ ....+...|+.+|.+|+... +....+.+.+. ...+..+.. .+...+-.++++|.++..
T Consensus 194 ~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~-~~~~~~~la~giL~Ni~~ 258 (684)
T 4gmo_A 194 ADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLAT-GTDPRAVMACGVLHNVFT 258 (684)
T ss_dssp HCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHH-SSCTTHHHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhc-CCcHHHHHHHHHHHhHhh
Confidence 2 35678999999999998865 44556666553 233333333 333446678999999853
|
| >1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A | Back alignment and structure |
|---|
Probab=98.65 E-value=1e-07 Score=105.45 Aligned_cols=276 Identities=11% Similarity=0.042 Sum_probs=188.0
Q ss_pred cCchHHHHHHHhcCC--CHHHHHHHHHHHHHHhccC-hhhHHHHHhcCCHHHHHHhhccC--CHHHHHHHHHHHHHhhcC
Q 004761 443 TTPYVKKLIEDLNST--SNEIQASAAAELRLLAKHN-MENRMIIGNCGAIPPLLSLLYSE--AQLTQEHAVTALLNLSIN 517 (732)
Q Consensus 443 ~~~~i~~Lv~~L~s~--~~~~~~~Al~~L~~La~~~-~~~r~~i~~~G~I~~Lv~lL~s~--~~~v~~~A~~~L~nLs~~ 517 (732)
|...++.|++.+.++ ++..+..|+..|..+++.. +..-.... ...++.++.+|.+. +..++..|+.++.++...
T Consensus 126 w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~ 204 (462)
T 1ibr_B 126 WPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS-NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEF 204 (462)
T ss_dssp CTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH-HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTT
T ss_pred cHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHH
Confidence 567899999999988 8899999999999998643 21100111 13677788888877 799999999999986432
Q ss_pred Cc-hH-HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchh--HHHHHhcchHHHHHHhhcCCCHHHHHHHHHHH
Q 004761 518 DE-NK-AMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEY--KAKIGRSGAVKALVDLLGSGTLRGRKDAATAL 593 (732)
Q Consensus 518 ~~-~k-~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~--k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL 593 (732)
-. +. ......-.++.+...+.+.+.+++..++.+|..+...... ...+ ..++++.++..+++.++.++..|+..+
T Consensus 205 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~v~~~a~~~l 283 (462)
T 1ibr_B 205 TKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYM-GPALFAITIEAMKSDIDEVALQGIEFW 283 (462)
T ss_dssp THHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTT-TTTHHHHHHHHHHCSSHHHHHHHHHHH
T ss_pred HHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 11 10 0011111355566667777899999999999888753211 1111 116778888888888899999999998
Q ss_pred HHhccCchh------------------HHHHHh---hchHHHHHHhc-CC-------ChHHHHHHHHHHHHHhCChhhHH
Q 004761 594 FNLSIFHEN------------------KARIIQ---AGAVKHLVDLM-DP-------STGMVDKAVALLANLSTVGEGRL 644 (732)
Q Consensus 594 ~nLs~~~~n------------------~~~lv~---~G~V~~Ll~lL-~~-------~~~l~e~al~iL~nLa~~~~~r~ 644 (732)
.+++..... ...+++ ..++|.++..+ .. +..++..|+.+|..|+..-. .
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~--~ 361 (462)
T 1ibr_B 284 SNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE--D 361 (462)
T ss_dssp HHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTT--T
T ss_pred HHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhcc--H
Confidence 888754210 001111 34677777777 21 23567788888888865332 1
Q ss_pred HHHHcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCh-HhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHhhccc
Q 004761 645 AIAREGGIPSLVEVVESGSQRGKENAASILLQLCLHSP-KFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFRNQR 723 (732)
Q Consensus 645 ~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~-~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~~~ 723 (732)
.+. ...++.+...+.+.+...++.|+.+|..++.+.. +.....+ ..+++.|+.++++.++++|..|.++|..+...-
T Consensus 362 ~~~-~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l-~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~ 439 (462)
T 1ibr_B 362 DIV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDPSVVVRDTAAWTVGRICELL 439 (462)
T ss_dssp THH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTT-TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHG
T ss_pred HHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence 222 1356777777888899999999999999997532 2111111 468999999999999999999999999987764
Q ss_pred c
Q 004761 724 E 724 (732)
Q Consensus 724 ~ 724 (732)
.
T Consensus 440 ~ 440 (462)
T 1ibr_B 440 P 440 (462)
T ss_dssp G
T ss_pred c
Confidence 3
|
| >2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.64 E-value=2.3e-08 Score=82.05 Aligned_cols=52 Identities=17% Similarity=0.343 Sum_probs=45.6
Q ss_pred CCCCccccccCcccCCCceec---CCCcccchHHHHHHHhcCCCCCCCCCCCCCCC
Q 004761 235 PIPPYFRCPLSLELMIDPVIV---ASGQTYERVFIQKWLDHGLNICPKTRQTLAHT 287 (732)
Q Consensus 235 ~~p~~f~Cpi~~~lm~dPV~~---~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~ 287 (732)
...++..||||++.|.+|+.+ +|||+|++.||.+|+... .+||.|++++...
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~-~~CP~Cr~~~~~~ 65 (74)
T 2ep4_A 11 ELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVR-KVCPLCNMPVLQL 65 (74)
T ss_dssp CCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHC-SBCTTTCCBCSSC
T ss_pred cCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcC-CcCCCcCcccccc
Confidence 466789999999999988765 999999999999999875 5899999988653
|
| >2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.62 E-value=3.4e-08 Score=79.80 Aligned_cols=51 Identities=18% Similarity=0.400 Sum_probs=43.5
Q ss_pred CCCCccccccCcccCC---CceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCC
Q 004761 235 PIPPYFRCPLSLELMI---DPVIVASGQTYERVFIQKWLDHGLNICPKTRQTLAH 286 (732)
Q Consensus 235 ~~p~~f~Cpi~~~lm~---dPV~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~ 286 (732)
....+..||||++.|. +|++++|||+|++.||.+|+..+ .+||.|+.++..
T Consensus 10 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~-~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 10 EEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITN-KKCPICRVDIEA 63 (69)
T ss_dssp STTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHC-SBCTTTCSBSCS
T ss_pred cCCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcC-CCCcCcCccccC
Confidence 3457789999999884 56789999999999999999875 679999998754
|
| >1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1 | Back alignment and structure |
|---|
Probab=98.61 E-value=2.4e-08 Score=76.77 Aligned_cols=49 Identities=20% Similarity=0.486 Sum_probs=42.9
Q ss_pred CCCccccccCcccCCC---ceecC-CCcccchHHHHHHHhcCCCCCCCCCCCCC
Q 004761 236 IPPYFRCPLSLELMID---PVIVA-SGQTYERVFIQKWLDHGLNICPKTRQTLA 285 (732)
Q Consensus 236 ~p~~f~Cpi~~~lm~d---PV~~~-~g~ty~r~~I~~~~~~~~~~cP~~~~~l~ 285 (732)
+.++..||||++.|.+ |++++ |||+|++.||.+|+... .+||.|++++.
T Consensus 2 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~-~~CP~Cr~~~~ 54 (55)
T 1iym_A 2 MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSH-STCPLCRLTVV 54 (55)
T ss_dssp CCCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTC-CSCSSSCCCSC
T ss_pred CCCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcC-CcCcCCCCEeE
Confidence 3467889999999999 88887 99999999999999864 78999998763
|
| >2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B | Back alignment and structure |
|---|
Probab=98.60 E-value=1.2e-06 Score=100.95 Aligned_cols=264 Identities=14% Similarity=0.107 Sum_probs=176.4
Q ss_pred CchHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCchH-H
Q 004761 444 TPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENK-A 522 (732)
Q Consensus 444 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k-~ 522 (732)
+..++.+.+.|.+.++.++..|+.++..+.+.+++. +.+.++++.|..+|.+.++.++..|+.+|..++.+.... .
T Consensus 120 ~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~---~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~ 196 (591)
T 2vgl_B 120 EYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQM---VEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNL 196 (591)
T ss_dssp HHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCC---HHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCS
T ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhh---cccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccc
Confidence 345677889999999999999999999999876542 233478899999999999999999999999998754311 0
Q ss_pred HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhccC---
Q 004761 523 MIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIF--- 599 (732)
Q Consensus 523 ~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~--- 599 (732)
.-...+.+..|+..+...++-.+...+.+|..+...++.. ...+++.+..++++.++.++..|+.++.++...
T Consensus 197 ~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~----~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~ 272 (591)
T 2vgl_B 197 LDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDRE----AQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPK 272 (591)
T ss_dssp CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHH----HHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCB
T ss_pred hhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHH----HHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCC
Confidence 0011234677777777778878888888887776543211 135678888889988899999999999998742
Q ss_pred chhHHHHHhhchHHHHHHhcCCChHHHHHHHHHHHHHhCC-hh------------------hH-HHH------HHcCc--
Q 004761 600 HENKARIIQAGAVKHLVDLMDPSTGMVDKAVALLANLSTV-GE------------------GR-LAI------AREGG-- 651 (732)
Q Consensus 600 ~~n~~~lv~~G~V~~Ll~lL~~~~~l~e~al~iL~nLa~~-~~------------------~r-~~i------~~~~~-- 651 (732)
++.....+-..+++.|+.+++++.+++..|+..|..++.. ++ .| .++ .+...
T Consensus 273 ~~~~~~~~~~~~~~~L~~L~~~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~~l~~~~nv~ 352 (591)
T 2vgl_B 273 DSDYYNMLLKKLAPPLVTLLSGEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQANIA 352 (591)
T ss_dssp TTBSHHHHHHHTHHHHHHHTTSCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHHHTCCSSTHH
T ss_pred CHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhChHHHHHHHHhheeccCChHHHHHHHHHHHHHHCChhhHH
Confidence 2222222334455666665566777777788777777531 10 11 111 11222
Q ss_pred --HHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHh
Q 004761 652 --IPSLVEVVESGSQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHF 719 (732)
Q Consensus 652 --I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l 719 (732)
++.|..++.+.+...+..+++++..++.+.+.... ..++.|+.++....+.++..+...++.+
T Consensus 353 ~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~~~-----~~v~~Ll~ll~~~~~~v~~e~i~~l~~i 417 (591)
T 2vgl_B 353 QVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAE-----RCVSTLLDLIQTKVNYVVQEAIVVIRDI 417 (591)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHHHH-----HHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhHHH-----HHHHHHHHHHcccchHHHHHHHHHHHHH
Confidence 34455556677889999999999998876543222 2355666666665555555444444433
|
| >1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1 | Back alignment and structure |
|---|
Probab=98.59 E-value=3.4e-08 Score=88.36 Aligned_cols=51 Identities=12% Similarity=0.307 Sum_probs=43.7
Q ss_pred CCCccccccCcccCCCce------------------ecCCCcccchHHHHHHHhc----CCCCCCCCCCCCCC
Q 004761 236 IPPYFRCPLSLELMIDPV------------------IVASGQTYERVFIQKWLDH----GLNICPKTRQTLAH 286 (732)
Q Consensus 236 ~p~~f~Cpi~~~lm~dPV------------------~~~~g~ty~r~~I~~~~~~----~~~~cP~~~~~l~~ 286 (732)
.+.+..||||++.|.+|+ +++|||.|++.||.+|+.. .+.+||.||..+..
T Consensus 22 ~~~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 22 VAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp SCCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred CCCCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 456679999999999987 7899999999999999963 45789999988754
|
| >2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.57 E-value=2.9e-08 Score=85.03 Aligned_cols=50 Identities=14% Similarity=0.424 Sum_probs=44.2
Q ss_pred CCCccccccCcccCCC---ceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCC
Q 004761 236 IPPYFRCPLSLELMID---PVIVASGQTYERVFIQKWLDHGLNICPKTRQTLAH 286 (732)
Q Consensus 236 ~p~~f~Cpi~~~lm~d---PV~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~ 286 (732)
..++..||||++.|.+ +++++|||.|++.||.+|+... .+||.|+.++..
T Consensus 37 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~-~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 37 VGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKS-GTCPVCRCMFPP 89 (91)
T ss_dssp SSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTT-CBCTTTCCBSSC
T ss_pred cCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcC-CcCcCcCccCCC
Confidence 4567899999999988 8889999999999999999864 699999998754
|
| >1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.56 E-value=3e-08 Score=81.59 Aligned_cols=49 Identities=14% Similarity=0.344 Sum_probs=43.7
Q ss_pred CCccccccCcccCCCc---eecCCCcccchHHHHHHHhcCCCCCCCCCCCCCC
Q 004761 237 PPYFRCPLSLELMIDP---VIVASGQTYERVFIQKWLDHGLNICPKTRQTLAH 286 (732)
Q Consensus 237 p~~f~Cpi~~~lm~dP---V~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~ 286 (732)
.++..||||++.|.+| ++++|||+|++.||.+|+... .+||.|++++..
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~-~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKAN-RTCPICRADSGP 72 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHC-SSCTTTCCCCCC
T ss_pred CCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcC-CcCcCcCCcCCC
Confidence 4678899999999998 778999999999999999875 689999998764
|
| >2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B | Back alignment and structure |
|---|
Probab=98.54 E-value=8.8e-07 Score=102.17 Aligned_cols=261 Identities=16% Similarity=0.174 Sum_probs=186.6
Q ss_pred chHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCchHHHH
Q 004761 445 PYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAMI 524 (732)
Q Consensus 445 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k~~i 524 (732)
.....+++.+.+.+.+.++.+.-.+..+++.+++.. .-++..|.+-|.++|+.++..|+.+|.++.. ++...
T Consensus 49 ~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~e~~-----~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~~-~~~~~-- 120 (591)
T 2vgl_B 49 SLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMA-----IMAVNSFVKDCEDPNPLIRALAVRTMGCIRV-DKITE-- 120 (591)
T ss_dssp GGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHSHHHH-----HTTHHHHGGGSSSSSHHHHHHHHHHHHTCCS-GGGHH--
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHcccCchHH-----HHHHHHHHHHcCCCCHHHHHHHHHHHHcCCh-HHHHH--
Confidence 345778899999998888877778888876554432 1346677788889999999999999988852 22222
Q ss_pred HHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhccCchhH-
Q 004761 525 AEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFHENK- 603 (732)
Q Consensus 525 ~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~n~- 603 (732)
..++.+..+|.+.++.+|..|+.++..+..... ..+...++++.|..+|.+.++.++..|+.+|..++...+..
T Consensus 121 ---~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p--~~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~ 195 (591)
T 2vgl_B 121 ---YLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINA--QMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSN 195 (591)
T ss_dssp ---HHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSC--CCHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCC
T ss_pred ---HHHHHHHHHcCCCChHHHHHHHHHHHHHHhhCh--hhcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCcc
Confidence 236778899999999999999999999876321 12223478899999999999999999999999998865422
Q ss_pred HHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCChhhHHHHHHcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhc---
Q 004761 604 ARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCL--- 679 (732)
Q Consensus 604 ~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~~r~~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~--- 679 (732)
..-...+.+..|+..+ +.++-.+-..+.+|..++..++.. ....++.+..++++.++.++..|+.++..+..
T Consensus 196 ~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~----~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~ 271 (591)
T 2vgl_B 196 LLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDRE----AQSICERVTPRLSHANSAVVLSAVKVLMKFLELLP 271 (591)
T ss_dssp SCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHH----HHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCC
T ss_pred chhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHH----HHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccC
Confidence 1112235567777777 556666777778887777543211 12346677777888889999999999999874
Q ss_pred CChHhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHhhcccc
Q 004761 680 HSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFRNQRE 724 (732)
Q Consensus 680 ~~~~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~~~~ 724 (732)
.+++....+. ..+.+.|+.++. +++.+|-.|...|..+....+
T Consensus 272 ~~~~~~~~~~-~~~~~~L~~L~~-~d~~vr~~aL~~l~~i~~~~p 314 (591)
T 2vgl_B 272 KDSDYYNMLL-KKLAPPLVTLLS-GEPEVQYVALRNINLIVQKRP 314 (591)
T ss_dssp BTTBSHHHHH-HHTHHHHHHHTT-SCHHHHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHH-HHHHHHHHHHhc-CCccHHHHHHHHHHHHHHhCh
Confidence 2344444333 345677777664 678889888888877765433
|
| >2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=3.5e-08 Score=105.52 Aligned_cols=49 Identities=20% Similarity=0.297 Sum_probs=44.8
Q ss_pred ccccccCcccCCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCC
Q 004761 239 YFRCPLSLELMIDPVIVASGQTYERVFIQKWLDHGLNICPKTRQTLAHT 287 (732)
Q Consensus 239 ~f~Cpi~~~lm~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~ 287 (732)
...||||++.+.|||+++|||+||+.||..|+..+..+||.||+++...
T Consensus 332 ~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 332 FQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGT 380 (389)
T ss_dssp SSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEE
T ss_pred CCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCc
Confidence 3799999999999999999999999999999986668999999988654
|
| >4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A | Back alignment and structure |
|---|
Probab=98.49 E-value=2.6e-08 Score=81.75 Aligned_cols=44 Identities=16% Similarity=0.261 Sum_probs=40.4
Q ss_pred CccccccCcccCCCceecCCCcc-cchHHHHHHHhcCCCCCCCCCCCCCC
Q 004761 238 PYFRCPLSLELMIDPVIVASGQT-YERVFIQKWLDHGLNICPKTRQTLAH 286 (732)
Q Consensus 238 ~~f~Cpi~~~lm~dPV~~~~g~t-y~r~~I~~~~~~~~~~cP~~~~~l~~ 286 (732)
+++.||||++.+.|||+++|||+ ||+.|+.+| ..||.||+++..
T Consensus 23 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 23 EEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV-----DKCPMCYTVITF 67 (74)
T ss_dssp HHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC-----SBCTTTCCBCSE
T ss_pred cCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC-----ccCCCcCcCccC
Confidence 56789999999999999999999 999999999 689999998754
|
| >4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.41 E-value=4.1e-08 Score=90.04 Aligned_cols=57 Identities=21% Similarity=0.456 Sum_probs=51.2
Q ss_pred CCCccccccCcccCCCc-------eecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccH
Q 004761 236 IPPYFRCPLSLELMIDP-------VIVASGQTYERVFIQKWLDHGLNICPKTRQTLAHTNLIPNY 293 (732)
Q Consensus 236 ~p~~f~Cpi~~~lm~dP-------V~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn~ 293 (732)
-++.+.||||++.+.+| |+++|||+|+..||.+|+... .+||.|+.++...++.|++
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~~~~~~~~~ 132 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA-NTCPTCRKKINHKRYHPIY 132 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHC-SBCTTTCCBCCGGGEEEEC
T ss_pred CCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcC-CCCCCCCCcCChhcceeee
Confidence 35789999999999998 889999999999999999875 6999999999888887764
|
| >3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=98.34 E-value=1.7e-05 Score=77.98 Aligned_cols=219 Identities=15% Similarity=0.104 Sum_probs=160.0
Q ss_pred CchHHHHHHHhcCCCHHHHHHHHHHHHHHhccChh-hHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcC-CchH
Q 004761 444 TPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNME-NRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSIN-DENK 521 (732)
Q Consensus 444 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~-~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~-~~~k 521 (732)
+..+..|+++|...++.++..|+..|..+.+..+. -+....+ ..++.++.++++.|..+...|+.+|.-|-.+ +-..
T Consensus 32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e-~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~ 110 (265)
T 3b2a_A 32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLE-RHLDVFINALSQENEKVTIKALRALGYLVKDVPMGS 110 (265)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHH-HHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCH
T ss_pred hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHH-HHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCH
Confidence 44678899999999999999999999999987432 3333333 5799999999999999999999999888655 3334
Q ss_pred HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhccCch
Q 004761 522 AMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFHE 601 (732)
Q Consensus 522 ~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~ 601 (732)
..+.. ....|..++++++.-.+++|+-.+..+......+ +++..+..++.+.+.+.+..|++++.|++...+
T Consensus 111 ~~y~K--l~~aL~dlik~~~~il~~eaae~Lgklkv~~~~~------~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~ 182 (265)
T 3b2a_A 111 KTFLK--AAKTLVSLLESPDDMMRIETIDVLSKLQPLEDSK------LVRTYINELVVSPDLYTKVAGFCLFLNMLNSSA 182 (265)
T ss_dssp HHHHH--HHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCCH------HHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCS
T ss_pred HHHHH--HHHHHHHHhcCCCchHHHHHHHHhCcCCcccchH------HHHHHHHHHHhCCChhHHHHHHHHHHHhhcccC
Confidence 43332 3667888889999999999999999985433322 456788889988899999999999999998664
Q ss_pred hHHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCChhhHHHHHHcCcHHHHHHHH--hcCCHHHHHHHHHH
Q 004761 602 NKARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVV--ESGSQRGKENAASI 673 (732)
Q Consensus 602 n~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~~r~~i~~~~~I~~Lv~lL--~~~s~~~~e~A~~~ 673 (732)
... +-.+++.-+-++| +.++.+++.|+.+|..+...+=-.+.+.+--++...++-+ ..|.|..++.|-.+
T Consensus 183 D~~--i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~~~~~~~~~~~v~~l~~~~~~~~~~~ka~~v 255 (265)
T 3b2a_A 183 DSG--HLTLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLENVKIELLKISRIVDGLVYREGAPIIRLKAKKV 255 (265)
T ss_dssp SCC--CGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHGGGCSSCHHHHHHHHHH
T ss_pred CHH--HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhHHHHHHHHHHHHHHHHHhcCChhHHHHHHHH
Confidence 332 1234555667777 7799999999999999988653211111212233444422 45778777766544
|
| >2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.33 E-value=1.7e-07 Score=77.15 Aligned_cols=44 Identities=16% Similarity=0.261 Sum_probs=39.1
Q ss_pred CccccccCcccCCCceecCCCcc-cchHHHHHHHhcCCCCCCCCCCCCCC
Q 004761 238 PYFRCPLSLELMIDPVIVASGQT-YERVFIQKWLDHGLNICPKTRQTLAH 286 (732)
Q Consensus 238 ~~f~Cpi~~~lm~dPV~~~~g~t-y~r~~I~~~~~~~~~~cP~~~~~l~~ 286 (732)
+++.||||++.+.|||+++|||+ ||+.|+.++ ..||.||+++..
T Consensus 24 ~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 24 EEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV-----DKCPMCYTVITF 68 (75)
T ss_dssp HHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHHC-----SBCTTTCCBCCC
T ss_pred CCCCCCcCCCCCCCEEEecCCCHHHHHHHhhCC-----CCCccCCceecC
Confidence 45779999999999999999999 999999643 689999998865
|
| >1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1 | Back alignment and structure |
|---|
Probab=98.27 E-value=1.4e-07 Score=81.25 Aligned_cols=67 Identities=12% Similarity=0.257 Sum_probs=49.3
Q ss_pred CCccccccCcccCCCceec---CCCcccchHHHHHHHhc----C---CCCCCC--CCCC--CCCCCCcccHHHHHHHHHH
Q 004761 237 PPYFRCPLSLELMIDPVIV---ASGQTYERVFIQKWLDH----G---LNICPK--TRQT--LAHTNLIPNYTVKAMIENW 302 (732)
Q Consensus 237 p~~f~Cpi~~~lm~dPV~~---~~g~ty~r~~I~~~~~~----~---~~~cP~--~~~~--l~~~~l~pn~~l~~~i~~~ 302 (732)
.+.|.||||++.+.+|+++ +|||+||+.||..||.. | ...||. |+.. +.... +.+......+++|
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~~-i~~ll~~~~~~ky 81 (94)
T 1wim_A 3 SGSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQENE-IECMVAAEIMQRY 81 (94)
T ss_dssp CSBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHHH-HHHHSCHHHHHHH
T ss_pred CCCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHHH-HHHHCCHHHHHHH
Confidence 3578999999999999875 69999999999999862 3 247999 9887 54422 2233335566667
Q ss_pred HH
Q 004761 303 CE 304 (732)
Q Consensus 303 ~~ 304 (732)
.+
T Consensus 82 ~~ 83 (94)
T 1wim_A 82 KK 83 (94)
T ss_dssp HH
T ss_pred HH
Confidence 55
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A | Back alignment and structure |
|---|
Probab=98.26 E-value=2.1e-05 Score=94.32 Aligned_cols=274 Identities=12% Similarity=0.053 Sum_probs=185.4
Q ss_pred cCchHHHHHHHhcCC--CHHHHHHHHHHHHHHhccC-hhhHHHHHh--cCCHHHHHHhhccC--CHHHHHHHHHHHHHhh
Q 004761 443 TTPYVKKLIEDLNST--SNEIQASAAAELRLLAKHN-MENRMIIGN--CGAIPPLLSLLYSE--AQLTQEHAVTALLNLS 515 (732)
Q Consensus 443 ~~~~i~~Lv~~L~s~--~~~~~~~Al~~L~~La~~~-~~~r~~i~~--~G~I~~Lv~lL~s~--~~~v~~~A~~~L~nLs 515 (732)
|...++.+++.+.++ ++..+..++..|..++... ++ .+.. ...++.+...+.++ +..++..|+.+|.++.
T Consensus 126 w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~---~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~ 202 (876)
T 1qgr_A 126 WPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPE---QLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSL 202 (876)
T ss_dssp CTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHH---HHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHG
T ss_pred cHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHh---hHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHH
Confidence 467889999999988 8899999999999998642 21 1111 24566677777766 6889999999999876
Q ss_pred cC-Cch-HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCch-hHHHHHhcchHHHHHHhhcCCCHHHHHHHHHH
Q 004761 516 IN-DEN-KAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEE-YKAKIGRSGAVKALVDLLGSGTLRGRKDAATA 592 (732)
Q Consensus 516 ~~-~~~-k~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~-~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~a 592 (732)
.. ..+ .........++.+...+...+.+++..++.+|..+..... .-.......+++.++..+.+.++.++..|+..
T Consensus 203 ~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~ 282 (876)
T 1qgr_A 203 EFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEF 282 (876)
T ss_dssp GGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 42 111 0011111246666777777788999999999988875221 11111223678888888888888999999999
Q ss_pred HHHhccCch---------------------hHHHHHhhchHHHHHHhc-C-------CChHHHHHHHHHHHHHhCChhhH
Q 004761 593 LFNLSIFHE---------------------NKARIIQAGAVKHLVDLM-D-------PSTGMVDKAVALLANLSTVGEGR 643 (732)
Q Consensus 593 L~nLs~~~~---------------------n~~~lv~~G~V~~Ll~lL-~-------~~~~l~e~al~iL~nLa~~~~~r 643 (732)
+.+++.... ...+-.-..+++.++..+ . .+..++..|+.+|..++..-.
T Consensus 283 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~-- 360 (876)
T 1qgr_A 283 WSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE-- 360 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHG--
T ss_pred HHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCc--
Confidence 888875421 000001134677777777 2 123567777778877765322
Q ss_pred HHHHHcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCh-HhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHhhcc
Q 004761 644 LAIAREGGIPSLVEVVESGSQRGKENAASILLQLCLHSP-KFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFRNQ 722 (732)
Q Consensus 644 ~~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~-~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~~ 722 (732)
..+.. ..++.+...+.+.+...++.|+.+|..++.+.. +...... ..+++.|+..+.+.++.+|..|.++|..+.+.
T Consensus 361 ~~~~~-~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~ 438 (876)
T 1qgr_A 361 DDIVP-HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDPSVVVRDTAAWTVGRICEL 438 (876)
T ss_dssp GGGHH-HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred HhhHH-HHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHh
Confidence 11111 245666667777889999999999999988643 3332222 34789999999988899999999999988765
Q ss_pred c
Q 004761 723 R 723 (732)
Q Consensus 723 ~ 723 (732)
-
T Consensus 439 ~ 439 (876)
T 1qgr_A 439 L 439 (876)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A | Back alignment and structure |
|---|
Probab=98.24 E-value=2.1e-05 Score=94.29 Aligned_cols=272 Identities=14% Similarity=0.095 Sum_probs=181.7
Q ss_pred chHHHHHHHhcCC--CHHHHHHHHHHHHHHhccChhhHH-HHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCC-ch
Q 004761 445 PYVKKLIEDLNST--SNEIQASAAAELRLLAKHNMENRM-IIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSIND-EN 520 (732)
Q Consensus 445 ~~i~~Lv~~L~s~--~~~~~~~Al~~L~~La~~~~~~r~-~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~-~~ 520 (732)
..++.+++.+..+ +.+++..|+.++..++..-..+-. .......++.+...+.+.+.+++..++.+|..+.... ..
T Consensus 172 ~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~ 251 (876)
T 1qgr_A 172 EILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQY 251 (876)
T ss_dssp HHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGG
T ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHH
Confidence 3467777888776 688899999999988754322110 0011125667777777888999999999999886532 21
Q ss_pred HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchh-----H--------------HHH--HhcchHHHHHHhhc
Q 004761 521 KAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEY-----K--------------AKI--GRSGAVKALVDLLG 579 (732)
Q Consensus 521 k~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~-----k--------------~~i--~~~g~i~~Lv~lL~ 579 (732)
-........++.++..+.+.++.++..|+..+..++..... . ..+ .-...++.++..|.
T Consensus 252 ~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~ 331 (876)
T 1qgr_A 252 METYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLT 331 (876)
T ss_dssp CHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhh
Confidence 12222336688888888877888999999888877643100 0 000 01245677778775
Q ss_pred C-------CCHHHHHHHHHHHHHhccCchhHHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCChh--hHHHHHHc
Q 004761 580 S-------GTLRGRKDAATALFNLSIFHENKARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGE--GRLAIARE 649 (732)
Q Consensus 580 ~-------~~~~~~~~Al~aL~nLs~~~~n~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~--~r~~i~~~ 649 (732)
. .+...++.|+.+|..++..-+. .++ ..+++.+...+ +.+..+++.|+.+|..++.... ...... .
T Consensus 332 ~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~--~~~-~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-~ 407 (876)
T 1qgr_A 332 KQDENDDDDDWNPCKAAGVCLMLLATCCED--DIV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-I 407 (876)
T ss_dssp CCCSSCCTTCCCHHHHHHHHHHHHHHHHGG--GGH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-H
T ss_pred cccccccccccHHHHHHHHHHHHHHHHCcH--hhH-HHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-H
Confidence 2 2456788888888888764321 111 24566666667 7788899999999999987542 112222 2
Q ss_pred CcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHhH--HHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHhhcc
Q 004761 650 GGIPSLVEVVESGSQRGKENAASILLQLCLHSPKFC--TLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFRNQ 722 (732)
Q Consensus 650 ~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~--~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~~ 722 (732)
..++.++..+.+.++.++..|+++|.+++...+... .... ..+++.|+..+.+. ++++..|.++|..+...
T Consensus 408 ~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l-~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~ 480 (876)
T 1qgr_A 408 QAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYL-APLLQCLIEGLSAE-PRVASNVCWAFSSLAEA 480 (876)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTH-HHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHH-HHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHH
Confidence 368889999988899999999999999998533210 0011 24577788888774 88999999888887654
|
| >2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A | Back alignment and structure |
|---|
Probab=98.23 E-value=5.4e-07 Score=71.59 Aligned_cols=49 Identities=18% Similarity=0.236 Sum_probs=43.6
Q ss_pred CCCccccccCcccCCCceec--CCCcc-cchHHHHHHHhcCCCCCCCCCCCCC
Q 004761 236 IPPYFRCPLSLELMIDPVIV--ASGQT-YERVFIQKWLDHGLNICPKTRQTLA 285 (732)
Q Consensus 236 ~p~~f~Cpi~~~lm~dPV~~--~~g~t-y~r~~I~~~~~~~~~~cP~~~~~l~ 285 (732)
-+++..|+||++-.+|+|++ +|||. ||..|+.+|+..+ ..||.||+++.
T Consensus 5 ~~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~-~~CPiCR~~i~ 56 (64)
T 2vje_A 5 LNAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRN-KPCPVCRQPIQ 56 (64)
T ss_dssp CGGGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTT-CCCTTTCCCCC
T ss_pred CCCcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcC-CcCCCcCcchh
Confidence 34677899999999999988 99999 8999999999764 68999999875
|
| >2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.21 E-value=7.7e-07 Score=74.30 Aligned_cols=48 Identities=17% Similarity=0.422 Sum_probs=40.8
Q ss_pred CccccccCcccCCC--------------ceec-CCCcccchHHHHHHHhcCCCCCCCCCCCCCC
Q 004761 238 PYFRCPLSLELMID--------------PVIV-ASGQTYERVFIQKWLDHGLNICPKTRQTLAH 286 (732)
Q Consensus 238 ~~f~Cpi~~~lm~d--------------PV~~-~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~ 286 (732)
++-.|+||++-|.+ ++++ +|||.|.+.||.+|+... .+||.||+++..
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~-~~CP~CR~~~~~ 76 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQN-NRCPLCQQDWVV 76 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTC-CBCTTTCCBCCE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhC-CCCCCcCCCcch
Confidence 56679999999988 4555 599999999999999875 699999998753
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A | Back alignment and structure |
|---|
Probab=98.19 E-value=1.1e-05 Score=96.49 Aligned_cols=268 Identities=12% Similarity=0.121 Sum_probs=174.7
Q ss_pred chHHHHHHHhcCCCHHHHHHHHHHHHHHhccCh-hhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCch---
Q 004761 445 PYVKKLIEDLNSTSNEIQASAAAELRLLAKHNM-ENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDEN--- 520 (732)
Q Consensus 445 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~-~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~--- 520 (732)
..++.+.+.+.+.++..+..|+..+..++.... ..-.... ...++.|+..+.+.++.++..++++|..++..-..
T Consensus 369 ~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l-~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~ 447 (861)
T 2bpt_A 369 PVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYV-HQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESID 447 (861)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSC
T ss_pred HHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcC
Confidence 345677777888899999999999999996542 2111112 24788889999989999999999999988743100
Q ss_pred -HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCch--hHHHHHh--cchHHHHHHhhcCCC--HHHHHHHHHHH
Q 004761 521 -KAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEE--YKAKIGR--SGAVKALVDLLGSGT--LRGRKDAATAL 593 (732)
Q Consensus 521 -k~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~--~k~~i~~--~g~i~~Lv~lL~~~~--~~~~~~Al~aL 593 (732)
... -...++.++..|++. +.++..|+++|.+++..-. ....+.. ..+++.|+.++.+.+ +.++..++.+|
T Consensus 448 ~~~~--~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al 524 (861)
T 2bpt_A 448 PQQH--LPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSAL 524 (861)
T ss_dssp TTTT--HHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHH
T ss_pred CHHH--HHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHH
Confidence 011 123477788888765 8899999999988864211 0011111 256788888887533 67888899999
Q ss_pred HHhccCchhH-HHHHhhchHHHHHHhc-CC---------------ChHHHHHHHHHHHHHhCChhhHHHHHH--cCcHHH
Q 004761 594 FNLSIFHENK-ARIIQAGAVKHLVDLM-DP---------------STGMVDKAVALLANLSTVGEGRLAIAR--EGGIPS 654 (732)
Q Consensus 594 ~nLs~~~~n~-~~lv~~G~V~~Ll~lL-~~---------------~~~l~e~al~iL~nLa~~~~~r~~i~~--~~~I~~ 654 (732)
..+....+.. ...+ ..+++.+++.+ .. ...++..++.+|.+++..-.. .+.. ...++.
T Consensus 525 ~~l~~~~~~~~~~~~-~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~--~~~~~~~~l~~~ 601 (861)
T 2bpt_A 525 TTMVEYATDTVAETS-ASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPS--SVEPVADMLMGL 601 (861)
T ss_dssp HHHHHHCCGGGHHHH-HHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGG--GTGGGHHHHHHH
T ss_pred HHHHHHcchhhHHHH-HHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHH
Confidence 9987643322 2222 24666666666 11 223556778888887653221 1111 134677
Q ss_pred HHHHHhcCCH-HHHHHHHHHHHHHhcCChH-hHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHhhc
Q 004761 655 LVEVVESGSQ-RGKENAASILLQLCLHSPK-FCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFRN 721 (732)
Q Consensus 655 Lv~lL~~~s~-~~~e~A~~~L~~L~~~~~~-~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~ 721 (732)
++..+...+. ..++.++.++..++...+. ....+- .+++.|...+....+.++..|..++..+.+
T Consensus 602 l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~--~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~ 668 (861)
T 2bpt_A 602 FFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLE--TFSPYLLKALNQVDSPVSITAVGFIADISN 668 (861)
T ss_dssp HHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHH--HHHHHHHHHHHCTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHH--HHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence 7777877665 7889999888888764222 222222 378888888877778888888888776643
|
| >1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 | Back alignment and structure |
|---|
Probab=98.18 E-value=1.7e-05 Score=91.87 Aligned_cols=251 Identities=14% Similarity=0.065 Sum_probs=153.0
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcC-CchHHHH
Q 004761 446 YVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSIN-DENKAMI 524 (732)
Q Consensus 446 ~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~-~~~k~~i 524 (732)
.+..+.+.|.++++.++..|++.|..+.. ++ +. ...++.+..+|.+.++.++..|+.++.++... ++..
T Consensus 108 ~in~l~kDL~~~n~~vr~lAL~~L~~i~~--~~----~~-~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v--- 177 (618)
T 1w63_A 108 MTNCIKNDLNHSTQFVQGLALCTLGCMGS--SE----MC-RDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELM--- 177 (618)
T ss_dssp HHHHHHHHHSCSSSHHHHHHHHHHHHHCC--HH----HH-HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGG---
T ss_pred HHHHHHHhcCCCCHhHHHHHHHHHHhcCC--HH----HH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHH---
Confidence 36788899999999999999999999873 22 22 24678889999999999999999999999753 2221
Q ss_pred HHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhH-HHHHhcchHHHHHHhhcC---------------CCHHHHHH
Q 004761 525 AEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYK-AKIGRSGAVKALVDLLGS---------------GTLRGRKD 588 (732)
Q Consensus 525 ~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k-~~i~~~g~i~~Lv~lL~~---------------~~~~~~~~ 588 (732)
.+.++.+..+|.+.++.++..|+.+|..++..+... ..+ ...+|.++.+|.. .++-.+..
T Consensus 178 --~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~ 253 (618)
T 1w63_A 178 --EMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHF--RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVR 253 (618)
T ss_dssp --GGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHH--HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHH
T ss_pred --HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHH--HHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHH
Confidence 256777888888889999999999999998654221 111 2566777776652 25666677
Q ss_pred HHHHHHHhccCchhH-HHHH--------------------h-----------------hchHHHHHHhc-CCChHHHHHH
Q 004761 589 AATALFNLSIFHENK-ARII--------------------Q-----------------AGAVKHLVDLM-DPSTGMVDKA 629 (732)
Q Consensus 589 Al~aL~nLs~~~~n~-~~lv--------------------~-----------------~G~V~~Ll~lL-~~~~~l~e~a 629 (732)
.+.+|..++...+.. ..+. - ..++..|..++ +.+..++..|
T Consensus 254 il~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~~~l~~~a~~~L~~~L~~~d~~vr~~a 333 (618)
T 1w63_A 254 ILRLLRILGRNDDDSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSESGLRVLAINILGRFLLNNDKNIRYVA 333 (618)
T ss_dssp HHHHHHHHTTTCHHHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCSSTTTHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCchHHHH
Confidence 777777776643221 1000 0 01233333333 2333333444
Q ss_pred HHHHHHHhCChhhHHHHHHcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHhHHHHHhCCCHHHHHHchhcCChHHH
Q 004761 630 VALLANLSTVGEGRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAK 709 (732)
Q Consensus 630 l~iL~nLa~~~~~r~~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~v~~~G~i~~L~~Ll~~g~~~~k 709 (732)
+..|..++... ..+. ......++..+.+.+...+..|+.+|..++..+ +... +++.|...+.+.+...|
T Consensus 334 L~~L~~i~~~~---p~~~-~~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~--nv~~-----iv~eL~~~l~~~d~e~r 402 (618)
T 1w63_A 334 LTSLLKTVQTD---HNAV-QRHRSTIVDCLKDLDVSIKRRAMELSFALVNGN--NIRG-----MMKELLYFLDSCEPEFK 402 (618)
T ss_dssp HHHHHHHHHHH---HHHH-GGGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSS--STHH-----HHHHHHHHHHHCCHHHH
T ss_pred HHHHHHHHhhC---HHHH-HHHHHHHHHHccCCChhHHHHHHHHHHHHcccc--cHHH-----HHHHHHHHHHhCCHHHH
Confidence 44443333211 0111 113345555555556666666666666666532 1122 23556666666666666
Q ss_pred HHHHHHHHHhhc
Q 004761 710 EKAQQLLSHFRN 721 (732)
Q Consensus 710 ~kA~~lL~~l~~ 721 (732)
+.+...+..+..
T Consensus 403 ~~~v~~I~~la~ 414 (618)
T 1w63_A 403 ADCASGIFLAAE 414 (618)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666666666544
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A | Back alignment and structure |
|---|
Probab=98.17 E-value=3.7e-05 Score=91.88 Aligned_cols=274 Identities=11% Similarity=0.056 Sum_probs=183.3
Q ss_pred cCchHHHHHHHhcCC-CHHHHHHHHHHHHHHhccCh-hhH--HHHHhcCCHHHHHHhhccC--CHHHHHHHHHHHHHhhc
Q 004761 443 TTPYVKKLIEDLNST-SNEIQASAAAELRLLAKHNM-ENR--MIIGNCGAIPPLLSLLYSE--AQLTQEHAVTALLNLSI 516 (732)
Q Consensus 443 ~~~~i~~Lv~~L~s~-~~~~~~~Al~~L~~La~~~~-~~r--~~i~~~G~I~~Lv~lL~s~--~~~v~~~A~~~L~nLs~ 516 (732)
|...++.|++.+.++ ++..+..|+..+..+++.-. +.+ ... ....++.+...+.+. +..++..|+.+|.++..
T Consensus 132 w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~-~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~ 210 (861)
T 2bpt_A 132 WPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSS-SNNILIAIVQGAQSTETSKAVRLAALNALADSLI 210 (861)
T ss_dssp CHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGG-HHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGG
T ss_pred cHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHH-HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHH
Confidence 466789999999988 88999999999999986422 110 000 013456667777776 79999999999988642
Q ss_pred C-Cch-HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCch--hHHHHHhcchHHHHHHhhcCCCHHHHHHHHHH
Q 004761 517 N-DEN-KAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEE--YKAKIGRSGAVKALVDLLGSGTLRGRKDAATA 592 (732)
Q Consensus 517 ~-~~~-k~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~--~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~a 592 (732)
. ..+ .........++.|...+.+++.+++..++.+|..+..... ....+. ...++.+...+.+.+..++..|+.+
T Consensus 211 ~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~-~~l~~~~~~~~~~~~~~vr~~a~~~ 289 (861)
T 2bpt_A 211 FIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYME-QALYALTIATMKSPNDKVASMTVEF 289 (861)
T ss_dssp GCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHH-HTHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred HHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 1 111 0000112246666777888889999999999988865221 112111 1566777778888889999999999
Q ss_pred HHHhccCchhH-----------------HHHHhhchHHHHHHhc-CC-------ChHHHHHHHHHHHHHhCChhhHHHHH
Q 004761 593 LFNLSIFHENK-----------------ARIIQAGAVKHLVDLM-DP-------STGMVDKAVALLANLSTVGEGRLAIA 647 (732)
Q Consensus 593 L~nLs~~~~n~-----------------~~lv~~G~V~~Ll~lL-~~-------~~~l~e~al~iL~nLa~~~~~r~~i~ 647 (732)
+..++...... ..-.-..+++.++..+ .. +..+...+..+|..++..-. ..+.
T Consensus 290 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~--~~~~ 367 (861)
T 2bpt_A 290 WSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCG--NHIL 367 (861)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHG--GGGH
T ss_pred HHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHcc--HhHH
Confidence 98887643110 0111146788888887 31 23677788888888875321 1111
Q ss_pred HcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC-hHhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHhhcc
Q 004761 648 REGGIPSLVEVVESGSQRGKENAASILLQLCLHS-PKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFRNQ 722 (732)
Q Consensus 648 ~~~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~-~~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~~ 722 (732)
...++.+.+.+.+.+...++.|+.+|..++.+. ++.....+. .+++.|+..+.+.++.+|..|.++|..+...
T Consensus 368 -~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~-~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 441 (861)
T 2bpt_A 368 -EPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVH-QALPSILNLMNDQSLQVKETTAWCIGRIADS 441 (861)
T ss_dssp -HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHH-HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHH-HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHH
Confidence 123555666667788899999999999999753 233333333 4788999999988999999999888877654
|
| >1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 | Back alignment and structure |
|---|
Probab=98.16 E-value=7.1e-05 Score=86.68 Aligned_cols=258 Identities=14% Similarity=0.077 Sum_probs=165.0
Q ss_pred CchHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCch-HH
Q 004761 444 TPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDEN-KA 522 (732)
Q Consensus 444 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~-k~ 522 (732)
+..++.+.+.|.+.++.++..|+.++..+.+.+++.- .++++.+..+|.+.|+.++..|+.+|..++..... ..
T Consensus 141 ~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v-----~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~ 215 (618)
T 1w63_A 141 RDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELM-----EMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLA 215 (618)
T ss_dssp HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGG-----GGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHH-----HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHH
Confidence 3456788899999999999999999999998776532 26788888999999999999999999998764321 11
Q ss_pred HHHHcCCHHHHHHHHcC---------------CCHHHHHHHHHHHHHhccCchh-HHHHH--------------------
Q 004761 523 MIAEAGAIEPLIHVLKS---------------GNGGAKENSAAALFSLSVLEEY-KAKIG-------------------- 566 (732)
Q Consensus 523 ~i~~~g~l~~Lv~lL~~---------------~~~e~~~~Aa~~L~~Ls~~~~~-k~~i~-------------------- 566 (732)
.+ ...++.++.+|.+ .++-.+...+.+|..+...+.. ...+.
T Consensus 216 ~~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~aV 293 (618)
T 1w63_A 216 HF--RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSEAMNDILAQVATNTETSKNVGNAI 293 (618)
T ss_dssp HH--HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHHHHHTSCCSSTHHHHH
T ss_pred HH--HHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccccchHHHH
Confidence 22 2567777777653 2566777788888777654321 11100
Q ss_pred hcchHHHHHHhhcCCCHHHHHHHHHHHHHhccCch--hHHH-------HHh------hchHHHHHHhc-CCChHHHHHHH
Q 004761 567 RSGAVKALVDLLGSGTLRGRKDAATALFNLSIFHE--NKAR-------IIQ------AGAVKHLVDLM-DPSTGMVDKAV 630 (732)
Q Consensus 567 ~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~--n~~~-------lv~------~G~V~~Ll~lL-~~~~~l~e~al 630 (732)
...++..++.+ ..++.....|...|..+..+.+ .|.. ++. ......++..+ +++..++..|+
T Consensus 294 ~~ea~~~i~~l--~~~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~~~~~~~~i~~~l~d~d~~Ir~~al 371 (618)
T 1w63_A 294 LYETVLTIMDI--KSESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNAVQRHRSTIVDCLKDLDVSIKRRAM 371 (618)
T ss_dssp HHHHHHHHHHS--CCCHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHHHGGGHHHHHHGGGSSCHHHHHHHH
T ss_pred HHHHHHHHHhc--CCCHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHHHHHHHHHHHHHHccCCChhHHHHHH
Confidence 00112222221 1123333344555554433221 1111 111 12234566666 77899999999
Q ss_pred HHHHHHhCChhhHHHHHHcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHhHHHHHhCCCHHHHHHchhcCChHHHH
Q 004761 631 ALLANLSTVGEGRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKE 710 (732)
Q Consensus 631 ~iL~nLa~~~~~r~~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~v~~~G~i~~L~~Ll~~g~~~~k~ 710 (732)
.+|..++..... .. .+..|.+++...+.+.+..++.++..+|..-+..... .++.|+.++..+...++.
T Consensus 372 elL~~l~~~~nv-~~-----iv~eL~~~l~~~d~e~r~~~v~~I~~la~k~~~~~~~-----~v~~ll~lL~~~~~~v~~ 440 (618)
T 1w63_A 372 ELSFALVNGNNI-RG-----MMKELLYFLDSCEPEFKADCASGIFLAAEKYAPSKRW-----HIDTIMRVLTTAGSYVRD 440 (618)
T ss_dssp HHHHHHCCSSST-HH-----HHHHHHHHHHHCCHHHHHHHHHHHHHHHHSSCCCHHH-----HHHHHHHHHHHTGGGSCS
T ss_pred HHHHHHcccccH-HH-----HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCccHHH-----HHHHHHHHHHhccchhHH
Confidence 999999885432 22 3678888888889999999999999999853222222 268899999887665555
Q ss_pred HHHHHH-HHhhc
Q 004761 711 KAQQLL-SHFRN 721 (732)
Q Consensus 711 kA~~lL-~~l~~ 721 (732)
.+...+ ..+++
T Consensus 441 ~~~~~l~~ii~~ 452 (618)
T 1w63_A 441 DAVPNLIQLITN 452 (618)
T ss_dssp SHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 444444 44443
|
| >2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B* | Back alignment and structure |
|---|
Probab=98.12 E-value=1.1e-06 Score=69.63 Aligned_cols=47 Identities=17% Similarity=0.239 Sum_probs=42.5
Q ss_pred CccccccCcccCCCceec--CCCcc-cchHHHHHHHhcCCCCCCCCCCCCC
Q 004761 238 PYFRCPLSLELMIDPVIV--ASGQT-YERVFIQKWLDHGLNICPKTRQTLA 285 (732)
Q Consensus 238 ~~f~Cpi~~~lm~dPV~~--~~g~t-y~r~~I~~~~~~~~~~cP~~~~~l~ 285 (732)
.+..|+||++-.+|||++ +|||. ||..|+.+|+..+ ..||.||+++.
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~-~~CPiCR~~i~ 55 (63)
T 2vje_B 6 LLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAG-ASCPICKKEIQ 55 (63)
T ss_dssp GGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTT-CBCTTTCCBCC
T ss_pred cCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhC-CcCCCcCchhh
Confidence 456899999999999998 99998 9999999999765 78999999875
|
| >2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A | Back alignment and structure |
|---|
Probab=98.08 E-value=3.8e-07 Score=75.73 Aligned_cols=44 Identities=20% Similarity=0.336 Sum_probs=39.7
Q ss_pred CccccccCcccCCCceecCCCcc-cchHHHHHHHhcCCCCCCCCCCCCCC
Q 004761 238 PYFRCPLSLELMIDPVIVASGQT-YERVFIQKWLDHGLNICPKTRQTLAH 286 (732)
Q Consensus 238 ~~f~Cpi~~~lm~dPV~~~~g~t-y~r~~I~~~~~~~~~~cP~~~~~l~~ 286 (732)
++..|+||++.+.|||+++|||. ||+.|+.+|. .||.||+++..
T Consensus 17 ~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~-----~CP~Cr~~i~~ 61 (79)
T 2yho_A 17 EAMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQ-----SCPVCRSRVEH 61 (79)
T ss_dssp HHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTCS-----BCTTTCCBCCE
T ss_pred CCCEeEEeCcccCcEEEECCCCHHHHHHHHHhcC-----cCCCCCchhhC
Confidence 45679999999999999999999 9999999873 89999998865
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A | Back alignment and structure |
|---|
Probab=98.08 E-value=1e-05 Score=101.23 Aligned_cols=272 Identities=12% Similarity=0.068 Sum_probs=183.4
Q ss_pred CchHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCchHHH
Q 004761 444 TPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAM 523 (732)
Q Consensus 444 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k~~ 523 (732)
...+..+++.+.+++++.+..|...|.+..+.....-.--.....++.|+..|.+.+..++..|+.+|.+++..-.. ..
T Consensus 5 ~~~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~-~~ 83 (1230)
T 1u6g_C 5 SYHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE-YQ 83 (1230)
T ss_dssp CHHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH-HH
T ss_pred HhHHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH-HH
Confidence 34578899999999999999999988877644211000001113567788888889999999999999999754222 11
Q ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhH------HHHHhcchHHHHHHhhc-CCCHHHHHHHHHHHHHh
Q 004761 524 IAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYK------AKIGRSGAVKALVDLLG-SGTLRGRKDAATALFNL 596 (732)
Q Consensus 524 i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k------~~i~~~g~i~~Lv~lL~-~~~~~~~~~Al~aL~nL 596 (732)
-...++.|+..|.+++..+|..|+.+|..++..-... ..-.....+|.|+..+. +.++..+..|+.+|..+
T Consensus 84 --~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~ 161 (1230)
T 1u6g_C 84 --VETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADM 161 (1230)
T ss_dssp --HHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Confidence 1235677778888888888988888888776421111 11112367899999998 47889999999999998
Q ss_pred ccCchhHHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCChhhHHHHHHcCcHHHHHHHHhcCC-HHHHHHHHHHH
Q 004761 597 SIFHENKARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVESGS-QRGKENAASIL 674 (732)
Q Consensus 597 s~~~~n~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~~r~~i~~~~~I~~Lv~lL~~~s-~~~~e~A~~~L 674 (732)
+...+....-.-..+++.|+..| +++..++..|+.+|..++...... + -...++.++..+.... ...+..++.++
T Consensus 162 ~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~--~-~~~~l~~l~~~L~~~~~~~~r~~a~~~l 238 (1230)
T 1u6g_C 162 LSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI--V-FVDLIEHLLSELSKNDSMSTTRTYIQCI 238 (1230)
T ss_dssp HHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-------CTTHHHHHHHHHHHTCSSCSCTTHHHHH
T ss_pred HHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHH--H-HHHHHHHHHHHhccCCchhHHHHHHHHH
Confidence 75211100001245777888888 778889999999999998754321 2 1235788888776542 34566678888
Q ss_pred HHHhcCChHhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHhhcc
Q 004761 675 LQLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFRNQ 722 (732)
Q Consensus 675 ~~L~~~~~~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~~ 722 (732)
..++...+..... .-..+++.++..+++.++.+|+.|..++..+.+.
T Consensus 239 ~~l~~~~~~~~~~-~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~ 285 (1230)
T 1u6g_C 239 AAISRQAGHRIGE-YLEKIIPLVVKFCNVDDDELREYCIQAFESFVRR 285 (1230)
T ss_dssp HHHHHHSSGGGTT-SCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHC
T ss_pred HHHHHHhHHHHHH-HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 7777643321110 0135789999999888888898888888777554
|
| >1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A | Back alignment and structure |
|---|
Probab=98.07 E-value=3.7e-05 Score=84.61 Aligned_cols=265 Identities=12% Similarity=0.040 Sum_probs=176.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccC--CHHHHHHHHHHHHHhhcCCc-hH-H
Q 004761 447 VKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSE--AQLTQEHAVTALLNLSINDE-NK-A 522 (732)
Q Consensus 447 i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~--~~~v~~~A~~~L~nLs~~~~-~k-~ 522 (732)
+..++..+.+++.+.+..|-..|..+.+.+ ..+++..|+.++.+. +..++..|..+|.|+..... .. .
T Consensus 3 l~~~L~~~~s~d~~~r~~Ae~~L~~~~~~~--------~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~ 74 (462)
T 1ibr_B 3 LITILEKTVSPDRLELEAAQKFLERAAVEN--------LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKA 74 (462)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhhC--------hHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHH
Confidence 456777777889999999999998866421 125667788888664 68899999999999854321 00 0
Q ss_pred H-------H---HHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCC--CHHHHHHHH
Q 004761 523 M-------I---AEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSG--TLRGRKDAA 590 (732)
Q Consensus 523 ~-------i---~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~--~~~~~~~Al 590 (732)
. + .....-..|+..|.+.+..+ ..++.+|..++..+... -...+.++.|+..+.++ ++..+..|+
T Consensus 75 ~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~--~~w~~ll~~L~~~l~~~~~~~~~r~~al 151 (462)
T 1ibr_B 75 QYQQRWLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPV--NQWPELIPQLVANVTNPNSTEHMKESTL 151 (462)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGG--TCCTTHHHHHHHHHHCTTCCHHHHHHHH
T ss_pred HHHhhhhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhccc--cccHHHHHHHHHHhccCCCCHHHHHHHH
Confidence 0 0 01122334667777776666 77777887776532110 01247899999999988 899999999
Q ss_pred HHHHHhccCc-hhHHHHHhhchHHHHHHhc-CC--ChHHHHHHHHHHHHHhCChhhHH--HHHHcCcHHHHHHHHhcCCH
Q 004761 591 TALFNLSIFH-ENKARIIQAGAVKHLVDLM-DP--STGMVDKAVALLANLSTVGEGRL--AIAREGGIPSLVEVVESGSQ 664 (732)
Q Consensus 591 ~aL~nLs~~~-~n~~~lv~~G~V~~Ll~lL-~~--~~~l~e~al~iL~nLa~~~~~r~--~i~~~~~I~~Lv~lL~~~s~ 664 (732)
.+|..++..- .....-.-..+++.++..+ +. +..++..|+.++.++...-+... .....-.++.+...+.+.++
T Consensus 152 ~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 231 (462)
T 1ibr_B 152 EAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDT 231 (462)
T ss_dssp HHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCH
Confidence 9999998632 1111111134777888888 54 68889999999998765322110 00111135556666677889
Q ss_pred HHHHHHHHHHHHHhcCChHhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHhhcc
Q 004761 665 RGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFRNQ 722 (732)
Q Consensus 665 ~~~e~A~~~L~~L~~~~~~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~~ 722 (732)
..+..++.+|..++...++.....+..++++.++..+...++.++..|.+.+..+.+.
T Consensus 232 ~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~ 289 (462)
T 1ibr_B 232 RVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDE 289 (462)
T ss_dssp HHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHH
Confidence 9999999999999875544222222226677778888888889999999888777554
|
| >3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B | Back alignment and structure |
|---|
Probab=97.99 E-value=1.2e-06 Score=93.16 Aligned_cols=45 Identities=13% Similarity=0.265 Sum_probs=41.0
Q ss_pred CCccccccCcccCCCceecCCCcc-cchHHHHHHHhcCCCCCCCCCCCCCC
Q 004761 237 PPYFRCPLSLELMIDPVIVASGQT-YERVFIQKWLDHGLNICPKTRQTLAH 286 (732)
Q Consensus 237 p~~f~Cpi~~~lm~dPV~~~~g~t-y~r~~I~~~~~~~~~~cP~~~~~l~~ 286 (732)
.+++.||||++.+.|||+++|||+ ||+.|+.+| ..||.||.++..
T Consensus 293 ~~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~-----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 293 QEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL-----RKCPICRGIIKG 338 (345)
T ss_dssp HTTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC-----SBCTTTCCBCCE
T ss_pred cCCCCCCccCCcCCceEEcCCCChhHhHHHHhcC-----CcCCCCCCCccC
Confidence 357899999999999999999999 999999988 689999998754
|
| >3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A | Back alignment and structure |
|---|
Probab=97.97 E-value=4.9e-06 Score=72.97 Aligned_cols=47 Identities=15% Similarity=0.381 Sum_probs=40.2
Q ss_pred CccccccCcccCCCc------------------eecCCCcccchHHHHHHHhcCCCCCCCCCCCCC
Q 004761 238 PYFRCPLSLELMIDP------------------VIVASGQTYERVFIQKWLDHGLNICPKTRQTLA 285 (732)
Q Consensus 238 ~~f~Cpi~~~lm~dP------------------V~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~ 285 (732)
++-.|+||++-|.+| +.++|||.|.+.||.+|+.. +.+||.||+++.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT-CSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc-CCcCcCCCCcce
Confidence 345799999999987 34789999999999999986 479999999763
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.94 E-value=6e-05 Score=76.12 Aligned_cols=180 Identities=11% Similarity=0.094 Sum_probs=133.4
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhccChhhH-HHHHhcCCHHHHHHhhc-cCCHHHHHHHHHHHHHhhcCCc-hHHHHH
Q 004761 449 KLIEDLNSTSNEIQASAAAELRLLAKHNMENR-MIIGNCGAIPPLLSLLY-SEAQLTQEHAVTALLNLSINDE-NKAMIA 525 (732)
Q Consensus 449 ~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r-~~i~~~G~I~~Lv~lL~-s~~~~v~~~A~~~L~nLs~~~~-~k~~i~ 525 (732)
.+.+.+.+.++..+..|+..|..+....+..- ..+ ...++.|...+. +.+..++..|+.+|..|+..-. .-.. .
T Consensus 19 ~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~--~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~-~ 95 (242)
T 2qk2_A 19 DFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY--GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSN-Y 95 (242)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC--HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHH-H
T ss_pred HHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH--HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHH-H
Confidence 47788889999999999999999886532110 000 134667788884 8899999999999999984311 1111 1
Q ss_pred HcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhccC-chhH-
Q 004761 526 EAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIF-HENK- 603 (732)
Q Consensus 526 ~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~-~~n~- 603 (732)
-...++.|+..+.+.+..+|..|..+|..+...... ...++.+...|++.++.++..++.+|..+... ....
T Consensus 96 ~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~------~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~ 169 (242)
T 2qk2_A 96 ASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL------EAQQESIVESLSNKNPSVKSETALFIARALTRTQPTAL 169 (242)
T ss_dssp HHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGC
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH------HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCc
Confidence 234688999999999999999999999988764321 24678899999999999999999999996443 2211
Q ss_pred -HHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhC
Q 004761 604 -ARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLST 638 (732)
Q Consensus 604 -~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~ 638 (732)
...+ ..+++.|+.++ +.+..++..|..+|..++.
T Consensus 170 ~~~~l-~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 170 NKKLL-KLLTTSLVKTLNEPDPTVRDSSAEALGTLIK 205 (242)
T ss_dssp CHHHH-HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred cHHHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 1222 36889999999 8889999999999988865
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.88 E-value=8.5e-05 Score=74.99 Aligned_cols=183 Identities=14% Similarity=0.095 Sum_probs=134.1
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHhccC-chhHHHHHhcchHHHHHHhhc-CCCHHHHHHHHHHHHHhccCchhHHHHHhh
Q 004761 532 PLIHVLKSGNGGAKENSAAALFSLSVL-EEYKAKIGRSGAVKALVDLLG-SGTLRGRKDAATALFNLSIFHENKARIIQA 609 (732)
Q Consensus 532 ~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~-~~~k~~i~~~g~i~~Lv~lL~-~~~~~~~~~Al~aL~nLs~~~~n~~~lv~~ 609 (732)
.+.+.+.+.+...|..|+..|..+... +..... .-..+++.|..++. +.+..++..|+.+|..|+..-.....-.-.
T Consensus 19 ~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~-~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~ 97 (242)
T 2qk2_A 19 DFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENG-EYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYAS 97 (242)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCC-CCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHH
T ss_pred HHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCC-CHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 367778888899999999999887653 111000 00146788888894 889999999999999998633221122234
Q ss_pred chHHHHHHhc-CCChHHHHHHHHHHHHHhCChhhHHHHHHcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhc-CChHh-HH
Q 004761 610 GAVKHLVDLM-DPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCL-HSPKF-CT 686 (732)
Q Consensus 610 G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~~r~~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~-~~~~~-~~ 686 (732)
.+++.|++.+ +.+..+++.|..+|.+++..... ...++.+...+.+.++.+++.++..|..+.. .+++. ..
T Consensus 98 ~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~------~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~ 171 (242)
T 2qk2_A 98 ACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL------EAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNK 171 (242)
T ss_dssp HHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH------HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccH
Confidence 5889999999 88889999999999999875421 1246778888888899999999999999654 33431 12
Q ss_pred HHHhCCCHHHHHHchhcCChHHHHHHHHHHHHhhcc
Q 004761 687 LVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFRNQ 722 (732)
Q Consensus 687 ~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~~ 722 (732)
..+. .++|.|+.++.+..+++|..|..+|..+...
T Consensus 172 ~~l~-~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~ 206 (242)
T 2qk2_A 172 KLLK-LLTTSLVKTLNEPDPTVRDSSAEALGTLIKL 206 (242)
T ss_dssp HHHH-HHHHHHHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Confidence 2222 5799999999998999999999988877543
|
| >2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A | Back alignment and structure |
|---|
Probab=97.88 E-value=0.00081 Score=77.73 Aligned_cols=252 Identities=11% Similarity=0.110 Sum_probs=166.7
Q ss_pred chHHHHHHHh--cCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCchHH
Q 004761 445 PYVKKLIEDL--NSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKA 522 (732)
Q Consensus 445 ~~i~~Lv~~L--~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k~ 522 (732)
..++.+.+.| .+.++.++..|+.++..+.+.+++. +...++++.|..+|.+.|+.++..|+.+|..++.....
T Consensus 146 ~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~---~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~-- 220 (621)
T 2vgl_A 146 AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDL---VPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPE-- 220 (621)
T ss_dssp HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGG---CCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHH--
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhh---cCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChH--
Confidence 4457788888 7889999999999999999876542 22248999999999999999999999999988754321
Q ss_pred HHHHcCCHHHHHH----HHcCC-------------CHHHHHHHHHHHHHhccCc--hhHHHHHhcchHHHHHHhhc----
Q 004761 523 MIAEAGAIEPLIH----VLKSG-------------NGGAKENSAAALFSLSVLE--EYKAKIGRSGAVKALVDLLG---- 579 (732)
Q Consensus 523 ~i~~~g~l~~Lv~----lL~~~-------------~~e~~~~Aa~~L~~Ls~~~--~~k~~i~~~g~i~~Lv~lL~---- 579 (732)
.+ ...++.++. ++..+ ++-.+.....+|..+...+ +.+..+. ..+..++..+.
T Consensus 221 ~~--~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~--~~L~~il~~~~~~~k 296 (621)
T 2vgl_A 221 EF--KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLT--ECLETILNKAQEPPK 296 (621)
T ss_dssp HH--TTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHH--HHHHHHHHHHHSCCS
T ss_pred HH--HHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHH--HHHHHHHHhhccCcc
Confidence 11 123444444 33322 4557777788877776532 2222222 23444443321
Q ss_pred -----CCCH--HHHHHHHHHHHHhccCchhHHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCChhhHHHHHHcCc
Q 004761 580 -----SGTL--RGRKDAATALFNLSIFHENKARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGEGRLAIAREGG 651 (732)
Q Consensus 580 -----~~~~--~~~~~Al~aL~nLs~~~~n~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~~r~~i~~~~~ 651 (732)
+.+. .+...|+.++.++...++-. ..++..|..+| +.+.+++-.++..|..++........+. .-
T Consensus 297 s~~l~~~n~~~aVl~ea~~~i~~l~~~~~~~-----~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~~~~--~~ 369 (621)
T 2vgl_A 297 SKKVQHSNAKNAVLFEAISLIIHHDSEPNLL-----VRACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAVK--TH 369 (621)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHCCCHHHH-----HHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHHHHH--TT
T ss_pred cccccccchHHHHHHHHHHHHHhcCCcHHHH-----HHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHHHHH--HH
Confidence 1122 67778888888886433221 24677888888 7788999999999999987643222232 34
Q ss_pred HHHHHHHHh-cCCHHHHHHHHHHHHHHhcCChHhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHh
Q 004761 652 IPSLVEVVE-SGSQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHF 719 (732)
Q Consensus 652 I~~Lv~lL~-~~s~~~~e~A~~~L~~L~~~~~~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l 719 (732)
...++..+. +.+...+..|+.+|..++. +.+...+ +..|...+...+...++.+...+..+
T Consensus 370 ~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~--~~Nv~~I-----v~eL~~yl~~~d~~~~~~~v~~I~~l 431 (621)
T 2vgl_A 370 IETVINALKTERDVSVRQRAVDLLYAMCD--RSNAQQI-----VAEMLSYLETADYSIREEIVLKVAIL 431 (621)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHHCC--HHHHHHH-----HHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCHhHHHHHHHHHHHHcC--hhhHHHH-----HHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 677778788 7888999999999999986 3444443 33455555555666666665555444
|
| >1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9 | Back alignment and structure |
|---|
Probab=97.85 E-value=0.00039 Score=76.04 Aligned_cols=228 Identities=12% Similarity=0.083 Sum_probs=157.4
Q ss_pred HHHHhhcc-CCHHHHHHHHHHHHHhhcCCchHHHHHHcC--CHHHHHHHHcC---------------C--CHHHHHHHHH
Q 004761 491 PLLSLLYS-EAQLTQEHAVTALLNLSINDENKAMIAEAG--AIEPLIHVLKS---------------G--NGGAKENSAA 550 (732)
Q Consensus 491 ~Lv~lL~s-~~~~v~~~A~~~L~nLs~~~~~k~~i~~~g--~l~~Lv~lL~~---------------~--~~e~~~~Aa~ 550 (732)
.++..|.+ .+...+..++.+|..|...+..|..+.+.+ .+++++.++.. + ....+.+++-
T Consensus 171 ~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll 250 (480)
T 1ho8_A 171 NLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLL 250 (480)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHH
T ss_pred HHHHHhccccCCchHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHHH
Confidence 34555554 345667788999998988888888887543 36666654431 1 2456889999
Q ss_pred HHHHhccCchhHHHHHhcchH--HHHHHhhcCC-CHHHHHHHHHHHHHhccCch-h----HH-HHHhhchHHHHHHhc--
Q 004761 551 ALFSLSVLEEYKAKIGRSGAV--KALVDLLGSG-TLRGRKDAATALFNLSIFHE-N----KA-RIIQAGAVKHLVDLM-- 619 (732)
Q Consensus 551 ~L~~Ls~~~~~k~~i~~~g~i--~~Lv~lL~~~-~~~~~~~Al~aL~nLs~~~~-n----~~-~lv~~G~V~~Ll~lL-- 619 (732)
++|-|+..++....+...+.. +.|+.+++.. ...+.+-++.+|.||..... + .. .++..++ +++++.|
T Consensus 251 ~iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~-l~~l~~L~~ 329 (480)
T 1ho8_A 251 LIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNA-LPTVQSLSE 329 (480)
T ss_dssp HHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCH-HHHHHHHHS
T ss_pred HHHHHHcCHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccc-hHHHHHHhh
Confidence 999999988877777766643 7788888764 48899999999999988641 1 12 2333444 5566666
Q ss_pred --CCChHHHHHHHHHHHHH-------hC---------------ChhhHH-HHH--------HcC--cHHHHHHHHhc---
Q 004761 620 --DPSTGMVDKAVALLANL-------ST---------------VGEGRL-AIA--------REG--GIPSLVEVVES--- 661 (732)
Q Consensus 620 --~~~~~l~e~al~iL~nL-------a~---------------~~~~r~-~i~--------~~~--~I~~Lv~lL~~--- 661 (732)
-.++++.+..-.+...| ++ +|..+. .+. +.+ .+..|+++|.+
T Consensus 330 rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~~ 409 (480)
T 1ho8_A 330 RKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVR 409 (480)
T ss_dssp SCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhcc
Confidence 24666555433322222 11 122221 222 222 37889999973
Q ss_pred -------CCHHHHHHHHHHHHHHhcCChHhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHh
Q 004761 662 -------GSQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHF 719 (732)
Q Consensus 662 -------~s~~~~e~A~~~L~~L~~~~~~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l 719 (732)
.++....-||.=+..++++-|..+..+-+.|+-..++.|+.+.++++|..|..+++-+
T Consensus 410 ~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQkl 474 (480)
T 1ho8_A 410 NGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAI 474 (480)
T ss_dssp TTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHH
T ss_pred ccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 2466777788889999998899888888899999999999999999999998887655
|
| >2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.83 E-value=1.6e-05 Score=63.77 Aligned_cols=45 Identities=16% Similarity=0.229 Sum_probs=40.3
Q ss_pred CCccccccCcccCCCceecCCCcc-cchHHHHHHHhcCCCCCCCCCCCCCC
Q 004761 237 PPYFRCPLSLELMIDPVIVASGQT-YERVFIQKWLDHGLNICPKTRQTLAH 286 (732)
Q Consensus 237 p~~f~Cpi~~~lm~dPV~~~~g~t-y~r~~I~~~~~~~~~~cP~~~~~l~~ 286 (732)
.++..|+||++-..|||+++|||. ||..|+.+ ...||.||+++..
T Consensus 13 ~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~-----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY-----FQQCPMCRQFVQE 58 (68)
T ss_dssp CCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH-----CSSCTTTCCCCCC
T ss_pred CCCCCCCCcCcCCCCEEEECCCChhhhHHHHhc-----CCCCCCCCcchhc
Confidence 467899999999999999999999 99999984 3689999998765
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A | Back alignment and structure |
|---|
Probab=97.82 E-value=3.6e-05 Score=96.30 Aligned_cols=226 Identities=15% Similarity=0.115 Sum_probs=156.1
Q ss_pred chHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCchH---
Q 004761 445 PYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENK--- 521 (732)
Q Consensus 445 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k--- 521 (732)
..++.+++.|.+.++++|..|+.+|..++...... .+ ...++.|+..|.+++..++..|..+|..++..-...
T Consensus 48 ~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~--~~--~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~ 123 (1230)
T 1u6g_C 48 KVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEY--QV--ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSG 123 (1230)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHH--HH--HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCHH--HH--HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccc
Confidence 45788999999999999999999999998654331 11 135667888888888888999999998886431111
Q ss_pred ---HHHHHcCCHHHHHHHHc-CCCHHHHHHHHHHHHHhccCc-h-hHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHH
Q 004761 522 ---AMIAEAGAIEPLIHVLK-SGNGGAKENSAAALFSLSVLE-E-YKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFN 595 (732)
Q Consensus 522 ---~~i~~~g~l~~Lv~lL~-~~~~e~~~~Aa~~L~~Ls~~~-~-~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~n 595 (732)
..-.....++.|+..+. +++...+..|+.+|..++... . ... .....++.|+..|.+.++.+++.|+.+|..
T Consensus 124 ~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~--~~~~ll~~l~~~L~~~~~~vR~~a~~al~~ 201 (1230)
T 1u6g_C 124 SALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVN--FHPSILTCLLPQLTSPRLAVRKRTIIALGH 201 (1230)
T ss_dssp CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTT--THHHHHHHHGGGGGCSSHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHH--HHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 11123457888999998 477899999999999887311 0 000 012467888888888889999999999999
Q ss_pred hccCchhHHHHHhhchHHHHHHhc--CCChHHHHHHHHHHHHHhCChhhHHHHHH--cCcHHHHHHHHhcCCHHHHHHHH
Q 004761 596 LSIFHENKARIIQAGAVKHLVDLM--DPSTGMVDKAVALLANLSTVGEGRLAIAR--EGGIPSLVEVVESGSQRGKENAA 671 (732)
Q Consensus 596 Ls~~~~n~~~lv~~G~V~~Ll~lL--~~~~~l~e~al~iL~nLa~~~~~r~~i~~--~~~I~~Lv~lL~~~s~~~~e~A~ 671 (732)
++...+.. + -...++.++..| ..+...+..++.++..++..... .+.. ...++.+++.+...++..++.|+
T Consensus 202 l~~~~~~~--~-~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~--~~~~~l~~l~~~ll~~l~d~~~~vR~~a~ 276 (1230)
T 1u6g_C 202 LVMSCGNI--V-FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGH--RIGEYLEKIIPLVVKFCNVDDDELREYCI 276 (1230)
T ss_dssp HTTTC-------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSG--GGTTSCTTHHHHHHHHHSSCCTTTHHHHH
T ss_pred HHHhcCHH--H-HHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHH--HHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 98765432 2 235688888888 32233445567777766542211 1221 24588888888888888999999
Q ss_pred HHHHHHhcCC
Q 004761 672 SILLQLCLHS 681 (732)
Q Consensus 672 ~~L~~L~~~~ 681 (732)
.++..++...
T Consensus 277 ~~l~~l~~~~ 286 (1230)
T 1u6g_C 277 QAFESFVRRC 286 (1230)
T ss_dssp HHHHHHHHCT
T ss_pred HHHHHHHHHC
Confidence 9998888753
|
| >2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.73 E-value=3.3e-05 Score=64.01 Aligned_cols=55 Identities=13% Similarity=0.225 Sum_probs=44.6
Q ss_pred CCccccccCcccC--CCceecCCC-----cccchHHHHHHHhcC-CCCCCCCCCCCCCC-CCcc
Q 004761 237 PPYFRCPLSLELM--IDPVIVASG-----QTYERVFIQKWLDHG-LNICPKTRQTLAHT-NLIP 291 (732)
Q Consensus 237 p~~f~Cpi~~~lm--~dPV~~~~g-----~ty~r~~I~~~~~~~-~~~cP~~~~~l~~~-~l~p 291 (732)
.++-.|+||++-+ .+|++++|+ |.|-+.||.+|+... ..+||+|+.++... .+.|
T Consensus 13 ~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~~~~P 76 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMETKLSG 76 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCCCSCC
T ss_pred CCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCcccCC
Confidence 3567899999876 579999996 999999999999864 46899999998643 3444
|
| >2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A | Back alignment and structure |
|---|
Probab=97.69 E-value=0.0015 Score=75.46 Aligned_cols=251 Identities=12% Similarity=0.117 Sum_probs=170.6
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhh--ccCCHHHHHHHHHHHHHhhcCCchHHHH
Q 004761 447 VKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLL--YSEAQLTQEHAVTALLNLSINDENKAMI 524 (732)
Q Consensus 447 i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL--~s~~~~v~~~A~~~L~nLs~~~~~k~~i 524 (732)
+..+.+.|.++++.++-.|++.|..+.. ++ +.+ ..++.+..+| .+.++.++..|+.++.++..... ..+
T Consensus 113 iN~l~kDl~~~n~~ir~lALr~L~~i~~--~e----~~~-~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p--~~~ 183 (621)
T 2vgl_A 113 NNAIKNDLASRNPTFMGLALHCIANVGS--RE----MAE-AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSP--DLV 183 (621)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHCC--HH----HHH-HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCG--GGC
T ss_pred HHHHHHhcCCCCHHHHHHHHHHhhccCC--HH----HHH-HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhCh--hhc
Confidence 5678889999999999999999999853 22 232 4567788888 78899999999999999875321 111
Q ss_pred HHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhc----CC-------------CHHHHH
Q 004761 525 AEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLG----SG-------------TLRGRK 587 (732)
Q Consensus 525 ~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~----~~-------------~~~~~~ 587 (732)
-..+.++.+..+|.+.++.++.+|+.+|..++..+. ..+ ...+|.++..|. .+ ++-.+.
T Consensus 184 ~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~--~~~--~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi 259 (621)
T 2vgl_A 184 PMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNP--EEF--KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSV 259 (621)
T ss_dssp CCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCH--HHH--TTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHH
T ss_pred CchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhCh--HHH--HHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHH
Confidence 124789999999998899999999999999876332 111 134454444332 21 466777
Q ss_pred HHHHHHHHhccCc--hhHHHHHhhchHHHHHHhc-C-C----------ChHHHHHHHHHHHHHhCChhhHHHHHHcCcHH
Q 004761 588 DAATALFNLSIFH--ENKARIIQAGAVKHLVDLM-D-P----------STGMVDKAVALLANLSTVGEGRLAIAREGGIP 653 (732)
Q Consensus 588 ~Al~aL~nLs~~~--~n~~~lv~~G~V~~Ll~lL-~-~----------~~~l~e~al~iL~nLa~~~~~r~~i~~~~~I~ 653 (732)
..+..|..++..+ +.+..+.+ .+..++..+ + + ...+.-.|+.++..+...++... .++.
T Consensus 260 ~il~ll~~~~~~~d~~~~~~l~~--~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~~~~~~-----~~~~ 332 (621)
T 2vgl_A 260 KLLRLLQCYPPPEDPAVRGRLTE--CLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPNLLV-----RACN 332 (621)
T ss_dssp HHHHHGGGSSSCSSHHHHHHHHH--HHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCCCHHHHH-----HHHH
T ss_pred HHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCCcHHHHH-----HHHH
Confidence 7777777776532 23333333 344444332 1 1 22667778888887764433222 3566
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhcCChHhHHHHHhCCCHHHHHHchh-cCChHHHHHHHHHHHHhh
Q 004761 654 SLVEVVESGSQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQ-SGTPRAKEKAQQLLSHFR 720 (732)
Q Consensus 654 ~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~v~~~G~i~~L~~Ll~-~g~~~~k~kA~~lL~~l~ 720 (732)
.|..++.+.++..+..|+..|..++...+. ..++. .....++..+. +.+..+|.+|..+|-.+-
T Consensus 333 ~L~~~L~~~~~niry~aL~~l~~l~~~~~~--~~~~~-~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~ 397 (621)
T 2vgl_A 333 QLGQFLQHRETNLRYLALESMCTLASSEFS--HEAVK-THIETVINALKTERDVSVRQRAVDLLYAMC 397 (621)
T ss_dssp HHHHHSSCSCHHHHHHHHHHHHHHTTCTTT--HHHHH-TTHHHHHHHHTTCCCHHHHHHHHHHHHHHC
T ss_pred HHHHHhcCCCcchHHHHHHHHHHHHhccCc--HHHHH-HHHHHHHHHhccCCCHhHHHHHHHHHHHHc
Confidence 788888888999999999999999986542 12232 24667777777 777889999888876654
|
| >3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=97.66 E-value=0.0012 Score=64.97 Aligned_cols=221 Identities=18% Similarity=0.106 Sum_probs=158.3
Q ss_pred CCHHHHHHhhccCCHHHHHHHHHHHHHhhcC-Cc-hHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCc-hhHH
Q 004761 487 GAIPPLLSLLYSEAQLTQEHAVTALLNLSIN-DE-NKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLE-EYKA 563 (732)
Q Consensus 487 G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~-~~-~k~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~-~~k~ 563 (732)
+.+..|..+|...|+.++.+|+.+|.++-.. +. -+.... ...++.++.++++.+..+...|+.+|..|.... -...
T Consensus 33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~-e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~ 111 (265)
T 3b2a_A 33 RALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVL-ERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSK 111 (265)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHH
T ss_pred hHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHH-HHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHH
Confidence 3577899999999999999999999998654 22 233333 347999999999999999999999999886532 1122
Q ss_pred HHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhccCchhHHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCChhh
Q 004761 564 KIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFHENKARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGEG 642 (732)
Q Consensus 564 ~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~n~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~~ 642 (732)
.+. -++.+|.+++.++++-....|+-.+..|...... .+++..+.+++ +.+..++..++.+|.+++...+.
T Consensus 112 ~y~--Kl~~aL~dlik~~~~il~~eaae~Lgklkv~~~~------~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D 183 (265)
T 3b2a_A 112 TFL--KAAKTLVSLLESPDDMMRIETIDVLSKLQPLEDS------KLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSAD 183 (265)
T ss_dssp HHH--HHHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCC------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSS
T ss_pred HHH--HHHHHHHHHhcCCCchHHHHHHHHhCcCCcccch------HHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCC
Confidence 222 2467888999999999999999999988443322 24677888888 88999999999999999875432
Q ss_pred HHHHHHcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC--hHhHHHHHhCCCHHHHHHch-hcCChHHHHHHHHHHHHh
Q 004761 643 RLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCLHS--PKFCTLVLQEGAVPPLVGLS-QSGTPRAKEKAQQLLSHF 719 (732)
Q Consensus 643 r~~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~--~~~~~~v~~~G~i~~L~~Ll-~~g~~~~k~kA~~lL~~l 719 (732)
... . .+.+.-+-.++.+.++..++.|..+|..+.+.- .+....+. ++....-.+. ..|.|..+.||...-..+
T Consensus 184 ~~i-~-~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~~~~~~--~~~~~v~~l~~~~~~~~~~~ka~~v~~~l 259 (265)
T 3b2a_A 184 SGH-L-TLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLENVKIELL--KISRIVDGLVYREGAPIIRLKAKKVSDLI 259 (265)
T ss_dssp CCC-G-GGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCCHHHHH--HHHHHHHHGGGCSSCHHHHHHHHHHHHHH
T ss_pred HHH-H-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhHHHHHH--HHHHHHHHHHHhcCChhHHHHHHHHHHHH
Confidence 111 1 124455667788899999999999999998852 11111111 2233334455 578899999988766554
Q ss_pred h
Q 004761 720 R 720 (732)
Q Consensus 720 ~ 720 (732)
.
T Consensus 260 e 260 (265)
T 3b2a_A 260 D 260 (265)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=97.66 E-value=8.3e-06 Score=74.33 Aligned_cols=119 Identities=22% Similarity=0.209 Sum_probs=90.1
Q ss_pred chHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCchHHHH
Q 004761 445 PYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAMI 524 (732)
Q Consensus 445 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k~~i 524 (732)
..++.++..|+++++.++..|+..|..+.. ..++.|+.+|.++++.++..|+++|.++..
T Consensus 12 ~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~------------~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~-------- 71 (131)
T 1te4_A 12 SGLVPRGSHMADENKWVRRDVSTALSRMGD------------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD-------- 71 (131)
T ss_dssp ---------CCSSCCCSSSSCCSSTTSCSS------------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS--------
T ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHhCc------------hHHHHHHHHHcCCCHHHHHHHHHHHHhcCC--------
Confidence 346788899998888888777777655431 237899999999999999999999988752
Q ss_pred HHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHH
Q 004761 525 AEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFN 595 (732)
Q Consensus 525 ~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~n 595 (732)
...++.|+..|++.++.+|..|+++|..+. ...+++.|+.++++.++.++..|+.+|..
T Consensus 72 --~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~----------~~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 72 --ERAVEPLIKLLEDDSGFVRSGAARSLEQIG----------GERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp --HHHHHHHHHHHHHCCTHHHHHHHHHHHHHC----------SHHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred --HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------cHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 235889999999999999999999998774 23578999999998889999999988764
|
| >4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.59 E-value=9e-06 Score=72.36 Aligned_cols=45 Identities=16% Similarity=0.426 Sum_probs=0.0
Q ss_pred cccccCcccCCCce-----------------e-cCCCcccchHHHHHHHhcCCCCCCCCCCCCC
Q 004761 240 FRCPLSLELMIDPV-----------------I-VASGQTYERVFIQKWLDHGLNICPKTRQTLA 285 (732)
Q Consensus 240 f~Cpi~~~lm~dPV-----------------~-~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~ 285 (732)
=.|+||++-|.+|. + .+|||.|.+.||.+|+.. +.+||.||+++.
T Consensus 49 d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~-~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 49 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE 111 (117)
T ss_dssp ----------------------------------------------------------------
T ss_pred CcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc-CCcCCCCCCeee
Confidence 47999999999853 2 489999999999999987 479999998753
|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=97.58 E-value=1.5e-05 Score=72.61 Aligned_cols=119 Identities=21% Similarity=0.175 Sum_probs=90.4
Q ss_pred cCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHH
Q 004761 486 CGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKI 565 (732)
Q Consensus 486 ~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i 565 (732)
...++.|+.+|.++++.++..|+.+|.++.. ..++.|+..|++.++.+|..|+++|.++..
T Consensus 11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~-------- 71 (131)
T 1te4_A 11 SSGLVPRGSHMADENKWVRRDVSTALSRMGD-----------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD-------- 71 (131)
T ss_dssp ----------CCSSCCCSSSSCCSSTTSCSS-----------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS--------
T ss_pred cccHHHHHHHhcCCCHHHHHHHHHHHHHhCc-----------hHHHHHHHHHcCCCHHHHHHHHHHHHhcCC--------
Confidence 4678889999999999999988888876531 136889999999999999999999988753
Q ss_pred HhcchHHHHHHhhcCCCHHHHHHHHHHHHHhccCchhHHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHH
Q 004761 566 GRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFHENKARIIQAGAVKHLVDLM-DPSTGMVDKAVALLAN 635 (732)
Q Consensus 566 ~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~n~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~n 635 (732)
..+++.|+.+|++.++.++..|+.+|.++. ...+++.|+.++ +++..++..|+..|..
T Consensus 72 --~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~----------~~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 72 --ERAVEPLIKLLEDDSGFVRSGAARSLEQIG----------GERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp --HHHHHHHHHHHHHCCTHHHHHHHHHHHHHC----------SHHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred --HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------cHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 246899999999999999999999999875 245788999999 7788888888887754
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00019 Score=73.12 Aligned_cols=187 Identities=11% Similarity=0.080 Sum_probs=130.0
Q ss_pred HHHHhcCCCHHHHHHHHHHHHH-HhccChhhHHHHHh-cCCHHHHHHhh-ccCCHHHHHHHHHHHHHhhcC-C-chHH-H
Q 004761 450 LIEDLNSTSNEIQASAAAELRL-LAKHNMENRMIIGN-CGAIPPLLSLL-YSEAQLTQEHAVTALLNLSIN-D-ENKA-M 523 (732)
Q Consensus 450 Lv~~L~s~~~~~~~~Al~~L~~-La~~~~~~r~~i~~-~G~I~~Lv~lL-~s~~~~v~~~A~~~L~nLs~~-~-~~k~-~ 523 (732)
+-+.+.+.++..+..|+..|.. +....+.......+ ...+..|...+ +..+..++..|+.+|..|+.. . ..-. .
T Consensus 21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~ 100 (249)
T 2qk1_A 21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKD 100 (249)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHH
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHH
Confidence 4566789999999999999999 87443211000011 12466777788 678999999999999999842 1 1111 1
Q ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHH-H-hcchHHHHHHhhcCCCHHHHHHHHHHHHHhccCch
Q 004761 524 IAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKI-G-RSGAVKALVDLLGSGTLRGRKDAATALFNLSIFHE 601 (732)
Q Consensus 524 i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i-~-~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~ 601 (732)
.. .-.++.++..+++....++..+..+|..+...-+- ... . -...++.|+..|++.++.++..++.+|..+.....
T Consensus 101 y~-~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~-~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~ 178 (249)
T 2qk1_A 101 YV-SLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDP-LASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEK 178 (249)
T ss_dssp HH-HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCT-TCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC
T ss_pred HH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccc-cccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcC
Confidence 11 22688899999888888888888888777642100 001 0 11467889999999999999999999998876433
Q ss_pred h---HH-HHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhC
Q 004761 602 N---KA-RIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLST 638 (732)
Q Consensus 602 n---~~-~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~ 638 (732)
. .- ..+...++|.|.+++ +.+..++..|..+|..++.
T Consensus 179 ~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 179 DGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK 220 (249)
T ss_dssp SCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred CcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 2 11 222257899999999 8889999999998888764
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=97.42 E-value=0.0069 Score=71.85 Aligned_cols=233 Identities=18% Similarity=0.137 Sum_probs=157.3
Q ss_pred HHHHHHHhcCCC--------HHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCC
Q 004761 447 VKKLIEDLNSTS--------NEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSIND 518 (732)
Q Consensus 447 i~~Lv~~L~s~~--------~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~ 518 (732)
+..|...|.+.+ +.++..|+-.|....-.+. + ..+++.|..+|..++..+.+.|..+|+.+-...
T Consensus 431 ~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~-~------eev~e~L~~~L~dd~~~~~~~AalALGli~vGT 503 (963)
T 4ady_A 431 TDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSA-N------IEVYEALKEVLYNDSATSGEAAALGMGLCMLGT 503 (963)
T ss_dssp HHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCC-C------HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCC-C------HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhccc
Confidence 455666665444 4566667777776543321 1 134667888888777777778888888765544
Q ss_pred chHHHHHHcCCHHHHHHHH-cCCCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcC-CCHHHHHHHHHHHHHh
Q 004761 519 ENKAMIAEAGAIEPLIHVL-KSGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGS-GTLRGRKDAATALFNL 596 (732)
Q Consensus 519 ~~k~~i~~~g~l~~Lv~lL-~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~-~~~~~~~~Al~aL~nL 596 (732)
.|.. ++..|+..+ .+.+..++..++..|.-+.. +....++.+++.|.. .++-++..|+.++.--
T Consensus 504 gn~~------ai~~LL~~~~e~~~e~vrR~aalgLGll~~--------g~~e~~~~li~~L~~~~dp~vRygaa~alglA 569 (963)
T 4ady_A 504 GKPE------AIHDMFTYSQETQHGNITRGLAVGLALINY--------GRQELADDLITKMLASDESLLRYGGAFTIALA 569 (963)
T ss_dssp CCHH------HHHHHHHHHHHCSCHHHHHHHHHHHHHHTT--------TCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHH
T ss_pred CCHH------HHHHHHHHHhccCcHHHHHHHHHHHHhhhC--------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 4433 245555544 34467788888888776543 334567888888764 5677888777777654
Q ss_pred ccCchhHHHHHhhchHHHHHHhc--CCChHHHHHHHHHHHHHhCChhhHHHHHHcCcHHHHHHH-HhcCCHHHHHHHHHH
Q 004761 597 SIFHENKARIIQAGAVKHLVDLM--DPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEV-VESGSQRGKENAASI 673 (732)
Q Consensus 597 s~~~~n~~~lv~~G~V~~Ll~lL--~~~~~l~e~al~iL~nLa~~~~~r~~i~~~~~I~~Lv~l-L~~~s~~~~e~A~~~ 673 (732)
....+|. .+|+.|+..+ +.+..++..|+..|+.++...+ ..++.++.+ ++++++.+|..|+.+
T Consensus 570 yaGTGn~------~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~--------e~v~rlv~~L~~~~d~~VR~gAalA 635 (963)
T 4ady_A 570 YAGTGNN------SAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY--------TTVPRIVQLLSKSHNAHVRCGTAFA 635 (963)
T ss_dssp TTTSCCH------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC--------SSHHHHTTTGGGCSCHHHHHHHHHH
T ss_pred hcCCCCH------HHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCH--------HHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 4444443 3667777777 6677888888888888765432 357777774 466899999999999
Q ss_pred HHHHhcCChHhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHhhc
Q 004761 674 LLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFRN 721 (732)
Q Consensus 674 L~~L~~~~~~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~ 721 (732)
|..+|.+++. .. ++..|..++.+.++.+++.|...|..+-.
T Consensus 636 LGli~aGn~~--~~-----aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~ 676 (963)
T 4ady_A 636 LGIACAGKGL--QS-----AIDVLDPLTKDPVDFVRQAAMIALSMILI 676 (963)
T ss_dssp HHHHTSSSCC--HH-----HHHHHHHHHTCSSHHHHHHHHHHHHHHST
T ss_pred HHHhccCCCc--HH-----HHHHHHHHccCCCHHHHHHHHHHHHHHhc
Confidence 9999987653 22 35567777777788888888888887744
|
| >3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.41 E-value=0.0049 Score=64.32 Aligned_cols=174 Identities=13% Similarity=0.038 Sum_probs=131.2
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCchHHHHH
Q 004761 446 YVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAMIA 525 (732)
Q Consensus 446 ~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k~~i~ 525 (732)
.+..+++.|.+.+....+.++..|+.+-..+...-..++..+|+..|+......+...+..++++|.+|-........++
T Consensus 119 ra~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvv 198 (339)
T 3dad_A 119 RVNAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVV 198 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHH
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchh
Confidence 35778899988888899999999998554555666667777889999999999999999999999999988777776666
Q ss_pred -HcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCch-hHHHHHhc-c---------hHHHHHHhhc---CCCHHHHHHHH
Q 004761 526 -EAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEE-YKAKIGRS-G---------AVKALVDLLG---SGTLRGRKDAA 590 (732)
Q Consensus 526 -~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~-~k~~i~~~-g---------~i~~Lv~lL~---~~~~~~~~~Al 590 (732)
....+..+..++.+.+..+...|+.+|..+....+ +...+... . .+..|+.+|. .++.+.+..|+
T Consensus 199 s~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~am 278 (339)
T 3dad_A 199 AHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTV 278 (339)
T ss_dssp HCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHH
Confidence 55788999999998788899999999999976543 33333221 1 3679999997 67888888888
Q ss_pred HHHHHhccC-c--hhHHHHH----hhchHHHHHHhc
Q 004761 591 TALFNLSIF-H--ENKARII----QAGAVKHLVDLM 619 (732)
Q Consensus 591 ~aL~nLs~~-~--~n~~~lv----~~G~V~~Ll~lL 619 (732)
..|-.+... + +.+..++ +.|+-..+...+
T Consensus 279 tLIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l 314 (339)
T 3dad_A 279 TLINKTLAALPDQDSFYDVTDALEQQGMEALVQRHL 314 (339)
T ss_dssp HHHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHH
Confidence 877666443 2 2233333 345555566656
|
| >3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.39 E-value=0.0029 Score=65.98 Aligned_cols=145 Identities=15% Similarity=0.137 Sum_probs=119.2
Q ss_pred HHhhcCCCHHHHHHHHHHHHH-hccCchhHHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCChhhHHHHHHc-Cc
Q 004761 575 VDLLGSGTLRGRKDAATALFN-LSIFHENKARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGEGRLAIARE-GG 651 (732)
Q Consensus 575 v~lL~~~~~~~~~~Al~aL~n-Ls~~~~n~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~~r~~i~~~-~~ 651 (732)
++-|.+++.+.++.++.-|.. ++....-...++..+++..|+.+. ..+.+....++.+|.+|..+..|-..++.+ ..
T Consensus 124 iekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~~f 203 (339)
T 3dad_A 124 LEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAHSDT 203 (339)
T ss_dssp HHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCHHH
T ss_pred HHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCCHHH
Confidence 344456778888888888888 566677888999999999999999 778999999999999999999999888864 47
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHhHHHHHhC--------C--CHHHHHHchh---cCChHHHHHHHHHHHH
Q 004761 652 IPSLVEVVESGSQRGKENAASILLQLCLHSPKFCTLVLQE--------G--AVPPLVGLSQ---SGTPRAKEKAQQLLSH 718 (732)
Q Consensus 652 I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~v~~~--------G--~i~~L~~Ll~---~g~~~~k~kA~~lL~~ 718 (732)
|..+..++.+....+...|..+|..+|..++.+...+.++ | -...|+.+++ +++...+.+|..++.-
T Consensus 204 I~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtLIN~ 283 (339)
T 3dad_A 204 IQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTLINK 283 (339)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHHHHH
Confidence 9999999998888999999999999999776544444331 2 3778999998 6788999999888765
Q ss_pred h
Q 004761 719 F 719 (732)
Q Consensus 719 l 719 (732)
+
T Consensus 284 l 284 (339)
T 3dad_A 284 T 284 (339)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00063 Score=69.20 Aligned_cols=189 Identities=8% Similarity=0.074 Sum_probs=131.7
Q ss_pred HHHHHcCCCHHHHHHHHHHHHH-hccC-chhHHHHHh-cchHHHHHHhh-cCCCHHHHHHHHHHHHHhccCch-hHHH-H
Q 004761 533 LIHVLKSGNGGAKENSAAALFS-LSVL-EEYKAKIGR-SGAVKALVDLL-GSGTLRGRKDAATALFNLSIFHE-NKAR-I 606 (732)
Q Consensus 533 Lv~lL~~~~~e~~~~Aa~~L~~-Ls~~-~~~k~~i~~-~g~i~~Lv~lL-~~~~~~~~~~Al~aL~nLs~~~~-n~~~-l 606 (732)
+...+.+.+..-|..|+..|.. +... ......... ...+..|...+ ++.+..++..|+.+|..|+..-. .... -
T Consensus 21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~ 100 (249)
T 2qk1_A 21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKD 100 (249)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHH
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHH
Confidence 3456778889999999999988 7631 110000111 14577888888 68899999999999999985221 1111 1
Q ss_pred HhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCChhhHHHHH--HcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCh-
Q 004761 607 IQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGEGRLAIA--REGGIPSLVEVVESGSQRGKENAASILLQLCLHSP- 682 (732)
Q Consensus 607 v~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~~r~~i~--~~~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~- 682 (732)
...-+++.+++.+ +....+++.+..+|..++..-+. .... -...++.|...+.+.++.+++.++.+|..++...+
T Consensus 101 y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~-~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~ 179 (249)
T 2qk1_A 101 YVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDP-LASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKD 179 (249)
T ss_dssp HHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCT-TCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccc-cccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCC
Confidence 2234789999999 77788888888888888653210 0000 00246778888888899999999999999887544
Q ss_pred --HhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHhhcc
Q 004761 683 --KFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFRNQ 722 (732)
Q Consensus 683 --~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~~ 722 (732)
......+...++|.|..++.+.++.+|..|..+|..+...
T Consensus 180 ~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~ 221 (249)
T 2qk1_A 180 GYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKI 221 (249)
T ss_dssp CSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 2222233357899999999999999999999999887654
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=97.30 E-value=0.031 Score=66.95 Aligned_cols=262 Identities=17% Similarity=0.172 Sum_probs=179.9
Q ss_pred chHHHHHHHhcCCCHHHHHHHHHHHHHHhccChh---hHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhc--CCc
Q 004761 445 PYVKKLIEDLNSTSNEIQASAAAELRLLAKHNME---NRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSI--NDE 519 (732)
Q Consensus 445 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~---~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~--~~~ 519 (732)
+.+..|.+.+...... ..|+..+..++..... .--.+. +.++.++..+......++..|..++..+.. ++.
T Consensus 54 ~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~--~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~ 129 (986)
T 2iw3_A 54 HFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIV--QLVPAICTNAGNKDKEIQSVASETLISIVNAVNPV 129 (986)
T ss_dssp HHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHH--TTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGG
T ss_pred hHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchH--HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHH
Confidence 4567777777654333 7888899999855421 111222 567777777777788888888877776643 232
Q ss_pred hHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHhccCchhHHHHHhc--chHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 004761 520 NKAMIAEAGAIEPLIHVLKSG-NGGAKENSAAALFSLSVLEEYKAKIGRS--GAVKALVDLLGSGTLRGRKDAATALFNL 596 (732)
Q Consensus 520 ~k~~i~~~g~l~~Lv~lL~~~-~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~--g~i~~Lv~lL~~~~~~~~~~Al~aL~nL 596 (732)
.. ...++.|+..|.+. ....+..|+.+|..|+... ...++.. ..||.+-+.+-+..+++++.|..++..+
T Consensus 130 a~-----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~--~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~ 202 (986)
T 2iw3_A 130 AI-----KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAA--KDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKA 202 (986)
T ss_dssp GH-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HH-----HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh--HHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHH
Confidence 32 23588899888765 5889999999999998633 3445443 7899999999999999999999999999
Q ss_pred ccCchhHHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCChhhHHHHHHcCcHHHHHHHHhcCCHHHHHHHHHHHH
Q 004761 597 SIFHENKARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVESGSQRGKENAASILL 675 (732)
Q Consensus 597 s~~~~n~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~~r~~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L~ 675 (732)
|..-+|+.. ...+|.|++.+ +++. +..++..|..-....+.-..-. +=.+|.|.+-|...+...+..++.++-
T Consensus 203 ~~~~~n~d~---~~~~~~~~~~~~~p~~--~~~~~~~l~~~tfv~~v~~~~l-~~~~p~l~r~l~~~~~~~~r~~~~~~~ 276 (986)
T 2iw3_A 203 TETVDNKDI---ERFIPSLIQCIADPTE--VPETVHLLGATTFVAEVTPATL-SIMVPLLSRGLNERETGIKRKSAVIID 276 (986)
T ss_dssp GGGCCCTTT---GGGHHHHHHHHHCTTH--HHHHHHHHTTCCCCSCCCHHHH-HHHHHHHHHHHTSSSHHHHHHHHHHHH
T ss_pred HhcCCCcch---hhhHHHHHHHhcChhh--hHHHHHHhhcCeeEeeecchhH-HHHHHHHHhhhccCcchhheeeEEEEc
Confidence 886555431 35788999998 5533 4555554444322222111000 002455555566668888999999999
Q ss_pred HHhc--CChHhHHHHHhCCCHHHHHHchhcC-ChHHHHHHHHHHHHhhcccc
Q 004761 676 QLCL--HSPKFCTLVLQEGAVPPLVGLSQSG-TPRAKEKAQQLLSHFRNQRE 724 (732)
Q Consensus 676 ~L~~--~~~~~~~~v~~~G~i~~L~~Ll~~g-~~~~k~kA~~lL~~l~~~~~ 724 (732)
|||+ .+|.....++ ...+|.|......- +|++|+.|..++..|.+...
T Consensus 277 n~~~lv~~~~~~~~f~-~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~~~ 327 (986)
T 2iw3_A 277 NMCKLVEDPQVIAPFL-GKLLPGLKSNFATIADPEAREVTLRALKTLRRVGN 327 (986)
T ss_dssp HHHTTCCCHHHHHHHH-TTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHHHT
T ss_pred chhhhcCCHHHHhhhh-hhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHhhc
Confidence 9999 5666555444 45788888877654 69999999999998876543
|
| >3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} | Back alignment and structure |
|---|
Probab=97.08 E-value=0.011 Score=62.90 Aligned_cols=246 Identities=12% Similarity=0.022 Sum_probs=148.0
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCchHHHHHHc
Q 004761 448 KKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAMIAEA 527 (732)
Q Consensus 448 ~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k~~i~~~ 527 (732)
...++.+.+.+.+.++-.--.+..+++..++. + =++..|.+=+.++++-++-.|+++|.++...+- -.
T Consensus 71 ~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e~---i---Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~m-~~----- 138 (355)
T 3tjz_B 71 FAMTKLFQSNDPTLRRMCYLTIKEMSCIAEDV---I---IVTSSLTKDMTGKEDSYRGPAVRALCQITDSTM-LQ----- 138 (355)
T ss_dssp HHHHGGGGCCCHHHHHHHHHHHHHHTTTSSCG---G---GGHHHHHHHHHSSCHHHHHHHHHHHHHHCCTTT-HH-----
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHH---H---HHHHHHHhhcCCCcHhHHHHHHHHHhcCCCHHH-HH-----
Confidence 44677888999888877777777887763321 1 245567777888999999999999999864331 11
Q ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhccCchhHHHHH
Q 004761 528 GAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFHENKARII 607 (732)
Q Consensus 528 g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~n~~~lv 607 (732)
...+++-+.|.+.++-++..|+.+...|.... .+.+ .+.++.+-+++.+.++.++..|+.+|+.+...+..
T Consensus 139 ~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~--pe~v--~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~~----- 209 (355)
T 3tjz_B 139 AIERYMKQAIVDKVPSVSSSALVSSLHLLKCS--FDVV--KRWVNEAQEAASSDNIMVQYHALGLLYHVRKNDRL----- 209 (355)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTC--HHHH--HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCHH-----
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHhccC--HHHH--HHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhchH-----
Confidence 23556777888899999999999998887533 3333 26889999999999999999999999999875421
Q ss_pred hhchHHHHHHhc-CC---ChHHHHHHHHHHHHHhCChhhHHHHHHcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChH
Q 004761 608 QAGAVKHLVDLM-DP---STGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCLHSPK 683 (732)
Q Consensus 608 ~~G~V~~Ll~lL-~~---~~~l~e~al~iL~nLa~~~~~r~~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~ 683 (732)
++..|+.-+ .. ++-.+-..+.++..++...+. -.....+..+...+++.++.+.-.|+.++..+......
T Consensus 210 ---a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~---~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~~ 283 (355)
T 3tjz_B 210 ---AVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDG---SRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSAK 283 (355)
T ss_dssp ---HHHHHHHHHHSSCCSCHHHHHHHHHHHTCC--------------------CCCCCSSHHHHHHHHHHHTC-------
T ss_pred ---HHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccch---hhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCHH
Confidence 344444444 21 222222233333333322100 01123456666778888999999999999887552221
Q ss_pred hHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHhhccccC
Q 004761 684 FCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFRNQREG 725 (732)
Q Consensus 684 ~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~~~~~ 725 (732)
+. ..++..|..++.+.++.+|=.|...|..+...+++
T Consensus 284 ----~~-~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~ 320 (355)
T 3tjz_B 284 ----EL-APAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPS 320 (355)
T ss_dssp ---------CCCTHHHHHHSSSSSSHHHHHHCC---------
T ss_pred ----HH-HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcH
Confidence 11 34466777777777777777776666555554443
|
| >3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} | Back alignment and structure |
|---|
Probab=96.84 E-value=0.0058 Score=65.14 Aligned_cols=236 Identities=11% Similarity=0.034 Sum_probs=127.9
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCchHHHHHH
Q 004761 447 VKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAMIAE 526 (732)
Q Consensus 447 i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k~~i~~ 526 (732)
+..+.+.+.++++-++-.|++.|..+...+. .+ ...+.+.+.|.+.++-++..|+-+...|.... .+. +
T Consensus 106 ~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~m------~~-~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~--pe~-v- 174 (355)
T 3tjz_B 106 TSSLTKDMTGKEDSYRGPAVRALCQITDSTM------LQ-AIERYMKQAIVDKVPSVSSSALVSSLHLLKCS--FDV-V- 174 (355)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHHHHHCCTTT------HH-HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTC--HHH-H-
T ss_pred HHHHHhhcCCCcHhHHHHHHHHHhcCCCHHH------HH-HHHHHHHHHcCCCCHHHHHHHHHHHHHHhccC--HHH-H-
Confidence 6788999999999999999999999875432 11 34556777888999999999999998886543 222 2
Q ss_pred cCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCC---CHHHHHHHHHHHHHhccCchhH
Q 004761 527 AGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSG---TLRGRKDAATALFNLSIFHENK 603 (732)
Q Consensus 527 ~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~---~~~~~~~Al~aL~nLs~~~~n~ 603 (732)
.+.++.+-.++.+.++-+..+|.++|..+...+. .++..|+.-+..+ ++-++-.-++.+..++..++
T Consensus 175 ~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~--------~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~-- 244 (355)
T 3tjz_B 175 KRWVNEAQEAASSDNIMVQYHALGLLYHVRKNDR--------LAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDED-- 244 (355)
T ss_dssp HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCH--------HHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC-------
T ss_pred HHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhch--------HHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccc--
Confidence 2689999999999999999999999999976442 1344455544443 34444333444333333220
Q ss_pred HHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCChhhHHHHHHcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCh
Q 004761 604 ARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCLHSP 682 (732)
Q Consensus 604 ~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~~r~~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~ 682 (732)
.-.....++.+..+| ..+..++-.|+.++..+...+.. .. ..++..|..++.+.++..+--|+..|..+....|
T Consensus 245 -~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~~---~~-~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P 319 (355)
T 3tjz_B 245 -GSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSAK---EL-APAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHP 319 (355)
T ss_dssp -------------CCCCCSSHHHHHHHHHHHTC---------------CCCTHHHHHHSSSSSSHHHHHHCC--------
T ss_pred -hhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCHH---HH-HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCc
Confidence 012234556666677 66788888899888887553221 11 2346667777888888899999998888888666
Q ss_pred HhHHHHHhCCCHHHHHHchhcCChHHHHHHH
Q 004761 683 KFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQ 713 (732)
Q Consensus 683 ~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~ 713 (732)
..... .-.-+..++.+++.-...-|.
T Consensus 320 ~~v~~-----~n~~ie~li~d~n~sI~t~Ai 345 (355)
T 3tjz_B 320 SAVTA-----CNLDLENLVTDANRSIATLAI 345 (355)
T ss_dssp -------------------------------
T ss_pred HHHHH-----HHHHHHHHccCCcHhHHHHHH
Confidence 53332 233345555555544444443
|
| >1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9 | Back alignment and structure |
|---|
Probab=96.64 E-value=0.37 Score=52.73 Aligned_cols=195 Identities=14% Similarity=0.108 Sum_probs=128.8
Q ss_pred CchHHHHHHHhc-CCCHHHHHHHHHHHHHHhccCh---hhHHHHHhcCCH-HHHH-HhhccCCHHHHHHHHHHHHHhhcC
Q 004761 444 TPYVKKLIEDLN-STSNEIQASAAAELRLLAKHNM---ENRMIIGNCGAI-PPLL-SLLYSEAQLTQEHAVTALLNLSIN 517 (732)
Q Consensus 444 ~~~i~~Lv~~L~-s~~~~~~~~Al~~L~~La~~~~---~~r~~i~~~G~I-~~Lv-~lL~s~~~~v~~~A~~~L~nLs~~ 517 (732)
...+..+++.|+ ..+.+.....+..+..+...++ ..-..+.+.... ..+. .++..++.-.+..+..++..++..
T Consensus 76 ~~~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~~ 155 (480)
T 1ho8_A 76 GKTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQN 155 (480)
T ss_dssp STTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTST
T ss_pred chHHHHHHHHHhhcChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhcc
Confidence 455778899887 4567888899999998887765 222233333222 2233 334444455556666555555422
Q ss_pred -CchHHHHHHcCCHH--HHHHHHcCC-CHHHHHHHHHHHHHhccCchhHHHHHhc--chHHHHHHhhcC-----------
Q 004761 518 -DENKAMIAEAGAIE--PLIHVLKSG-NGGAKENSAAALFSLSVLEEYKAKIGRS--GAVKALVDLLGS----------- 580 (732)
Q Consensus 518 -~~~k~~i~~~g~l~--~Lv~lL~~~-~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~--g~i~~Lv~lL~~----------- 580 (732)
......+ ...+. -++..|... +...+..++.+|..|...+++|..+... +.+++++.+++.
T Consensus 156 ~~~~~~~l--~~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~ 233 (480)
T 1ho8_A 156 GLHNVKLV--EKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIV 233 (480)
T ss_dssp TTCCHHHH--HHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC--------
T ss_pred CCccHhHH--HHHhhhHHHHHHhccccCCchHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhhccccccccc
Confidence 1111111 11122 355556553 3556667889999999999999998865 357777765541
Q ss_pred ----C--CHHHHHHHHHHHHHhccCchhHHHHHhhchH--HHHHHhc--CCChHHHHHHHHHHHHHhCCh
Q 004761 581 ----G--TLRGRKDAATALFNLSIFHENKARIIQAGAV--KHLVDLM--DPSTGMVDKAVALLANLSTVG 640 (732)
Q Consensus 581 ----~--~~~~~~~Al~aL~nLs~~~~n~~~lv~~G~V--~~Ll~lL--~~~~~l~e~al~iL~nLa~~~ 640 (732)
+ ..+.+..++.+++-|+..++....+...++. +.|++++ +....++.-++++|.||....
T Consensus 234 ~~~~~~~~~Ql~Y~~ll~iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~ 303 (480)
T 1ho8_A 234 ATNSNHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTR 303 (480)
T ss_dssp -----CCHHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSS
T ss_pred cccCCCccHHHHHHHHHHHHHHHcCHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhccc
Confidence 1 2456788999999999999888888887755 6777777 677889999999999998754
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=96.62 E-value=0.33 Score=46.04 Aligned_cols=212 Identities=12% Similarity=0.177 Sum_probs=143.0
Q ss_pred CCHHHHHHhhccCCHHHHHHHHHHHHHhhcC-CchHHHHHHcCCHHHHHHHHc-CCCHHHHHHHHHHHHHhccCchhHHH
Q 004761 487 GAIPPLLSLLYSEAQLTQEHAVTALLNLSIN-DENKAMIAEAGAIEPLIHVLK-SGNGGAKENSAAALFSLSVLEEYKAK 564 (732)
Q Consensus 487 G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~-~~~k~~i~~~g~l~~Lv~lL~-~~~~e~~~~Aa~~L~~Ls~~~~~k~~ 564 (732)
.++..++.+|..+-..++.+|+.++.+++.. ++...- .+..|+.+++ +.........+.++..++.... .
T Consensus 32 ~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~ep-----l~~kL~vm~~ksEaIpltqeIa~a~G~la~i~P---e 103 (253)
T 2db0_A 32 SVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEP-----MLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKP---E 103 (253)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHH-----HHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCH---H
T ss_pred HHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHH-----HHHHHHHHHhhcccCchHHHHHHHHhHHHHhCH---H
Confidence 3567788899888889999999999998764 332222 2444555544 4556666677777777765221 1
Q ss_pred HHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhccCchhHHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCChhhH
Q 004761 565 IGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFHENKARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGEGR 643 (732)
Q Consensus 565 i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~n~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~~r 643 (732)
+. .+.+|.+..=.+-++++.+.+-..+|..+...++. .-.+++.-+..++ +++..-.-.|+..+..+..+.
T Consensus 104 ~v-~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~----l~~~v~rdi~smltskd~~Dkl~aLnFi~alGen~--- 175 (253)
T 2db0_A 104 LV-KSMIPVLFANYRIGDEKTKINVSYALEEIAKANPM----LMASIVRDFMSMLSSKNREDKLTALNFIEAMGENS--- 175 (253)
T ss_dssp HH-HHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHH----HHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTT---
T ss_pred HH-HhhHHHHHHHHhcCCccceecHHHHHHHHHHhChH----HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccC---
Confidence 11 13567777777788999999999999988764332 2235667778888 666555556666666664432
Q ss_pred HHHHHcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHhhc
Q 004761 644 LAIAREGGIPSLVEVVESGSQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFRN 721 (732)
Q Consensus 644 ~~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~ 721 (732)
..-+ ...+|.|..+|..++.-++..|+.+|.+++..++..+..+. ..+ .=+...++-++++..+.|..+.-
T Consensus 176 ~~yv-~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRkii~-----~kl-~e~~D~S~lv~~~V~egL~rl~l 246 (253)
T 2db0_A 176 FKYV-NPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVVI-----KRL-EELNDTSSLVNKTVKEGISRLLL 246 (253)
T ss_dssp HHHH-GGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHHH-----HHH-HHCCCSCHHHHHHHHHHHHHHHH
T ss_pred cccc-CcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHHH-----HHH-HHhcCcHHHHHHHHHHHHHHHHH
Confidence 2222 35799999999999999999999999999999988665443 222 33344456677777666655543
|
| >2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.50 E-value=0.25 Score=49.37 Aligned_cols=229 Identities=17% Similarity=0.139 Sum_probs=152.4
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHH-hcCCHHHHHHhh-------ccC-----CHHHHHHHHHHHH
Q 004761 446 YVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIG-NCGAIPPLLSLL-------YSE-----AQLTQEHAVTALL 512 (732)
Q Consensus 446 ~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~-~~G~I~~Lv~lL-------~s~-----~~~v~~~A~~~L~ 512 (732)
.+..++..|..+ +.+..|+.+|..--..-++---.+= ..|.+..|++=. +.+ ...-..+|+..|.
T Consensus 4 ~i~qli~~L~~p--~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQ 81 (268)
T 2fv2_A 4 KIYQWINELSSP--ETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQ 81 (268)
T ss_dssp HHHHHHHHTSST--TTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCc--hhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHH
Confidence 355667666544 4577777666543222222222222 347666664422 111 1334578888888
Q ss_pred HhhcCCchHHHHHHcCCHHHHHHHHcCCC-----HHHHHHHHHHHHHhccCch--hHHHHHhcchHHHHHHhhcCCCHHH
Q 004761 513 NLSINDENKAMIAEAGAIEPLIHVLKSGN-----GGAKENSAAALFSLSVLEE--YKAKIGRSGAVKALVDLLGSGTLRG 585 (732)
Q Consensus 513 nLs~~~~~k~~i~~~g~l~~Lv~lL~~~~-----~e~~~~Aa~~L~~Ls~~~~--~k~~i~~~g~i~~Lv~lL~~~~~~~ 585 (732)
-++.+++.|..+..+...-.|..+|+..+ +..|..+++++..|...++ .-..+...+++|..+..+..|+.-.
T Consensus 82 cvAshpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselS 161 (268)
T 2fv2_A 82 CVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELS 161 (268)
T ss_dssp HHHHCTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHH
T ss_pred HHHcCcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHH
Confidence 88999999999999987777778887664 4588999999999986543 3344556799999999999999999
Q ss_pred HHHHHHHHHHhccCchhHHHHH-------h-hchHHHHHHhc--CCChHHHHHHHHHHHHHhCChhhHHHHHHcC--cH-
Q 004761 586 RKDAATALFNLSIFHENKARII-------Q-AGAVKHLVDLM--DPSTGMVDKAVALLANLSTVGEGRLAIAREG--GI- 652 (732)
Q Consensus 586 ~~~Al~aL~nLs~~~~n~~~lv-------~-~G~V~~Ll~lL--~~~~~l~e~al~iL~nLa~~~~~r~~i~~~~--~I- 652 (732)
+..|..++..+-.++.+-..+. . ..++..++.-+ .++..+....+.+-..|+.++..|.++...- .+
T Consensus 162 KtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~rar~aL~~~LP~~Lr 241 (268)
T 2fv2_A 162 KTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQCLPDQLK 241 (268)
T ss_dssp HHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHHHHHHHHHSCGGGT
T ss_pred HHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHhCcHHhh
Confidence 9999999998877765433332 2 23444444444 6788899999999999999999998887521 11
Q ss_pred -HHHHHHHhcCCHHHHHHHHHHHHHH
Q 004761 653 -PSLVEVVESGSQRGKENAASILLQL 677 (732)
Q Consensus 653 -~~Lv~lL~~~s~~~~e~A~~~L~~L 677 (732)
..+..+++ +++..+..-...+.|+
T Consensus 242 d~tf~~~l~-~D~~~k~~l~qLl~n~ 266 (268)
T 2fv2_A 242 DTTFAQVLK-DDTTTKRWLAQLVKNL 266 (268)
T ss_dssp SSTTHHHHT-SCHHHHHHHHHHHHHS
T ss_pred ChHHHHHHh-cCHHHHHHHHHHHHhc
Confidence 11222232 4666666665555554
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=96.49 E-value=0.42 Score=56.79 Aligned_cols=233 Identities=14% Similarity=0.055 Sum_probs=153.0
Q ss_pred hHHHHHHHhc---CCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCC--------HHHHHHHHHHHHHh
Q 004761 446 YVKKLIEDLN---STSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEA--------QLTQEHAVTALLNL 514 (732)
Q Consensus 446 ~i~~Lv~~L~---s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~--------~~v~~~A~~~L~nL 514 (732)
.+..|-+.|. +.++.++..|+..|..+...... .++..|...|.+++ +.++..|+..|+..
T Consensus 393 gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~--------~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla 464 (963)
T 4ady_A 393 GKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGR--------DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLA 464 (963)
T ss_dssp HHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTH--------HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcH--------HHHHHHHHHHcCccccccccccHHHHHHHHHHHHHH
Confidence 3566667776 66788899999999998765421 14667888887654 56777777788765
Q ss_pred hcCCchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhc-CCCHHHHHHHHHHH
Q 004761 515 SINDENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLG-SGTLRGRKDAATAL 593 (732)
Q Consensus 515 s~~~~~k~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~-~~~~~~~~~Al~aL 593 (732)
.....+. .+++.|..+|.+.+...+..|+.+|.-+-.-..+ ..++..|+..+. +.+..+++.++.+|
T Consensus 465 ~~GS~~e------ev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn------~~ai~~LL~~~~e~~~e~vrR~aalgL 532 (963)
T 4ady_A 465 AMGSANI------EVYEALKEVLYNDSATSGEAAALGMGLCMLGTGK------PEAIHDMFTYSQETQHGNITRGLAVGL 532 (963)
T ss_dssp STTCCCH------HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCC------HHHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred hcCCCCH------HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCC------HHHHHHHHHHHhccCcHHHHHHHHHHH
Confidence 4443332 2467788888877766666666666544221111 135566666643 45678888888888
Q ss_pred HHhccCchhHHHHHhhchHHHHHHhc--CCChHHHHHHHHHHHHHhCChhhHHHHHHcCcHHHHHHHHh-cCCHHHHHHH
Q 004761 594 FNLSIFHENKARIIQAGAVKHLVDLM--DPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVE-SGSQRGKENA 670 (732)
Q Consensus 594 ~nLs~~~~n~~~lv~~G~V~~Ll~lL--~~~~~l~e~al~iL~nLa~~~~~r~~i~~~~~I~~Lv~lL~-~~s~~~~e~A 670 (732)
..+....+ ..++.+++.| +.++.++..++.+++.-....... .+|..|++.+. +.++.++..|
T Consensus 533 Gll~~g~~--------e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~------~aIq~LL~~~~~d~~d~VRraA 598 (963)
T 4ady_A 533 ALINYGRQ--------ELADDLITKMLASDESLLRYGGAFTIALAYAGTGNN------SAVKRLLHVAVSDSNDDVRRAA 598 (963)
T ss_dssp HHHTTTCG--------GGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCH------HHHHHHHHHHHHCSCHHHHHHH
T ss_pred HhhhCCCh--------HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCH------HHHHHHHHHhccCCcHHHHHHH
Confidence 87765433 3566777777 566666666666666443332221 24666666553 4577889999
Q ss_pred HHHHHHHhcCChHhHHHHHhCCCHHHHHH-chhcCChHHHHHHHHHHHHhhc
Q 004761 671 ASILLQLCLHSPKFCTLVLQEGAVPPLVG-LSQSGTPRAKEKAQQLLSHFRN 721 (732)
Q Consensus 671 ~~~L~~L~~~~~~~~~~v~~~G~i~~L~~-Ll~~g~~~~k~kA~~lL~~l~~ 721 (732)
+..|.-+..++++ .++.++. +++++++.+|..|..+|.++..
T Consensus 599 ViaLGlI~~g~~e---------~v~rlv~~L~~~~d~~VR~gAalALGli~a 641 (963)
T 4ady_A 599 VIALGFVLLRDYT---------TVPRIVQLLSKSHNAHVRCGTAFALGIACA 641 (963)
T ss_dssp HHHHHHHTSSSCS---------SHHHHTTTGGGCSCHHHHHHHHHHHHHHTS
T ss_pred HHHHHhhccCCHH---------HHHHHHHHHHhcCCHHHHHHHHHHHHHhcc
Confidence 9999887776542 4555555 5567889999999999988754
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=96.46 E-value=0.63 Score=44.15 Aligned_cols=214 Identities=20% Similarity=0.206 Sum_probs=144.1
Q ss_pred cCchHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhc-cCCHHHHHHHHHHHHHhhcCCchH
Q 004761 443 TTPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLY-SEAQLTQEHAVTALLNLSINDENK 521 (732)
Q Consensus 443 ~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~-s~~~~v~~~A~~~L~nLs~~~~~k 521 (732)
++..+..+++.|..+-+.+|..|+..+..+++.-++...-+ +.-|+.+++ +...........+++.++...
T Consensus 30 d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~ksEaIpltqeIa~a~G~la~i~--- 101 (253)
T 2db0_A 30 DESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKSEAIPLTQEIAKAFGQMAKEK--- 101 (253)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHHHCCSHHHHHHHHHHHHHHHHHC---
T ss_pred hHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhhcccCchHHHHHHHHhHHHHhC---
Confidence 35678899999999999999999999999998877644333 334556654 455555455667887777432
Q ss_pred HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhccCch
Q 004761 522 AMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFHE 601 (732)
Q Consensus 522 ~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~ 601 (732)
..++ .+.+|.|..-..-|++.++.+.+.+|..++... -..+ .+++.-+..++.+.+..-+-.|+..+. .-.+
T Consensus 102 Pe~v-~~vVp~lfanyrigd~kikIn~~yaLeeIaran--P~l~--~~v~rdi~smltskd~~Dkl~aLnFi~---alGe 173 (253)
T 2db0_A 102 PELV-KSMIPVLFANYRIGDEKTKINVSYALEEIAKAN--PMLM--ASIVRDFMSMLSSKNREDKLTALNFIE---AMGE 173 (253)
T ss_dssp HHHH-HHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHC--HHHH--HHHHHHHHHHTSCSSHHHHHHHHHHHH---TCCT
T ss_pred HHHH-HhhHHHHHHHHhcCCccceecHHHHHHHHHHhC--hHHH--HHHHHHHHHHhcCCChHHHHHHHHHHH---HHhc
Confidence 1111 134666666677899999999999999887522 1111 135566777888777555555555544 4445
Q ss_pred hHHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCChh-hHHHHHHcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Q 004761 602 NKARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGE-GRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCL 679 (732)
Q Consensus 602 n~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~-~r~~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~ 679 (732)
|..+-+ .-.+|.|..+| +.+.-+.-.|+.+|.+++...+ -|.. |...++-+...|..++......|..+..
T Consensus 174 n~~~yv-~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRki------i~~kl~e~~D~S~lv~~~V~egL~rl~l 246 (253)
T 2db0_A 174 NSFKYV-NPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKV------VIKRLEELNDTSSLVNKTVKEGISRLLL 246 (253)
T ss_dssp TTHHHH-GGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHH------HHHHHHHCCCSCHHHHHHHHHHHHHHHH
T ss_pred cCcccc-CcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHH------HHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 554433 35788899999 7788888889999999998654 3333 3334455666777777777766666554
|
| >2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0034 Score=50.78 Aligned_cols=48 Identities=17% Similarity=0.292 Sum_probs=38.3
Q ss_pred ccccccCcccCCCcee-cCCCcccchHHHHHHHhcC-CCCCCCCCCCCCC
Q 004761 239 YFRCPLSLELMIDPVI-VASGQTYERVFIQKWLDHG-LNICPKTRQTLAH 286 (732)
Q Consensus 239 ~f~Cpi~~~lm~dPV~-~~~g~ty~r~~I~~~~~~~-~~~cP~~~~~l~~ 286 (732)
--.|+||.+++..=+. ..|||.|=..||.+||... ..+||.|+++...
T Consensus 15 i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 15 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp SCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred CCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence 3569999999874433 2699999999999999753 4789999988653
|
| >1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3 | Back alignment and structure |
|---|
Probab=96.37 E-value=0.0035 Score=48.61 Aligned_cols=48 Identities=17% Similarity=0.187 Sum_probs=39.8
Q ss_pred CccccccCcccCCCceecCCCc-----ccchHHHHHHHhc-CCCCCCCCCCCCC
Q 004761 238 PYFRCPLSLELMIDPVIVASGQ-----TYERVFIQKWLDH-GLNICPKTRQTLA 285 (732)
Q Consensus 238 ~~f~Cpi~~~lm~dPV~~~~g~-----ty~r~~I~~~~~~-~~~~cP~~~~~l~ 285 (732)
+.-.|.||++-..+|.+.||.. -|=+.|+.+|+.. ++.+||+|+.++.
T Consensus 5 ~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 5 DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp SCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 3456999999888998888653 7889999999974 6689999998875
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=96.29 E-value=0.046 Score=65.51 Aligned_cols=260 Identities=12% Similarity=0.102 Sum_probs=171.4
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCc---hHH-
Q 004761 447 VKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDE---NKA- 522 (732)
Q Consensus 447 i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~---~k~- 522 (732)
+..+++.+...+...+..|+..+..+.......+ ....+.+..|...+...... +.|+.++..|+.... ..+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~ 91 (986)
T 2iw3_A 16 LEELFQKLSVATADNRHEIASEVASFLNGNIIEH--DVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEP 91 (986)
T ss_dssp HHHHHHHHTTCCTTTHHHHHHHHHHHHTSSCSSS--SCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHH
T ss_pred HHHHHhhccccchhHHHHHHHHHHHHHhcccccc--ccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCccc
Confidence 4456666766555566778888888765432111 11125566677777654333 999999999985421 122
Q ss_pred HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhcc--CchhHHHHHhcchHHHHHHhhcCC-CHHHHHHHHHHHHHhccC
Q 004761 523 MIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSV--LEEYKAKIGRSGAVKALVDLLGSG-TLRGRKDAATALFNLSIF 599 (732)
Q Consensus 523 ~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~--~~~~k~~i~~~g~i~~Lv~lL~~~-~~~~~~~Al~aL~nLs~~ 599 (732)
.++ +.++.++..+.+....++..|..++..+.. .+... ..++|.|+..|.+. ..+.+..|+.+|..|+..
T Consensus 92 ~~~--~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~-----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~ 164 (986)
T 2iw3_A 92 YIV--QLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI-----KALLPHLTNAIVETNKWQEKIAILAAFSAMVDA 164 (986)
T ss_dssp HHH--TTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred chH--HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH-----HHHHHHHHHHhccccchHHHHHHHHHHHHHHHH
Confidence 222 468888888777667777776666655532 12111 34689999999765 589999999999999875
Q ss_pred chhHHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCChhhHHHHHHcCcHHHHHHHHhcCCHHHHHHHHHHHHHHh
Q 004761 600 HENKARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLC 678 (732)
Q Consensus 600 ~~n~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~~r~~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~ 678 (732)
........=..+||.+.+.+ +..+.+...|..++..+|..-+++. -...||.|++-+.+++. ...++..|...+
T Consensus 165 ~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d---~~~~~~~~~~~~~~p~~--~~~~~~~l~~~t 239 (986)
T 2iw3_A 165 AKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKD---IERFIPSLIQCIADPTE--VPETVHLLGATT 239 (986)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTT---TGGGHHHHHHHHHCTTH--HHHHHHHHTTCC
T ss_pred hHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcc---hhhhHHHHHHHhcChhh--hHHHHHHhhcCe
Confidence 43222222257899999999 8889999999999999987544322 13469999999987643 555677776654
Q ss_pred cC-ChHhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHhhccccC
Q 004761 679 LH-SPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFRNQREG 725 (732)
Q Consensus 679 ~~-~~~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~~~~~ 725 (732)
.- .-+.-... =.+|.|..-+...+...|++++-+..+|.+.-.+
T Consensus 240 fv~~v~~~~l~---~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~ 284 (986)
T 2iw3_A 240 FVAEVTPATLS---IMVPLLSRGLNERETGIKRKSAVIIDNMCKLVED 284 (986)
T ss_dssp CCSCCCHHHHH---HHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCC
T ss_pred eEeeecchhHH---HHHHHHHhhhccCcchhheeeEEEEcchhhhcCC
Confidence 41 11111111 1367777777777888899999999999876544
|
| >3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=95.97 E-value=0.0099 Score=65.50 Aligned_cols=249 Identities=14% Similarity=0.091 Sum_probs=155.5
Q ss_pred CccccccCchHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhc--CCHHHHHHhhc-------cCC---HHHH
Q 004761 437 RSDEVTTTPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNC--GAIPPLLSLLY-------SEA---QLTQ 504 (732)
Q Consensus 437 ~~~~~~~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~--G~I~~Lv~lL~-------s~~---~~v~ 504 (732)
+.+|.-+ ....|+..|-++.+++|-.|+-.||.+.+.....-...... ...-.|+..|. .+| ..++
T Consensus 168 ~~eWPfq--fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVR 245 (800)
T 3oc3_A 168 PIENVLD--FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVR 245 (800)
T ss_dssp CCCSGGG--TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHH
T ss_pred CCCCHHH--HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehH
Confidence 3445543 77889999999999999999999999886543210000111 22223333331 112 5689
Q ss_pred HHHHHHHHHhhcCCchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHH-hcchHHHHHHhhcCCCH
Q 004761 505 EHAVTALLNLSINDENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIG-RSGAVKALVDLLGSGTL 583 (732)
Q Consensus 505 ~~A~~~L~nLs~~~~~k~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~-~~g~i~~Lv~lL~~~~~ 583 (732)
|.|+.+|+.+ ..-... ...+..|+..+.....+++-.++-.|.++. +.+. -.++++.++.-|++.+.
T Consensus 246 ETaAQtLGaL-~hLp~e-----~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~------DLL~~Ld~Vv~aVL~GL~D~DD 313 (800)
T 3oc3_A 246 DAAAYLLSRI-YPLIGP-----NDIIEQLVGFLDSGDWQVQFSGLIALGYLK------EFVEDKDGLCRKLVSLLSSPDE 313 (800)
T ss_dssp HHHHHHHHHH-TTTSCS-----CCHHHHHTTGGGCSCHHHHHHHHHHHHHTG------GGCCCHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHH-HhCChh-----HHHHHHHHhhcCCCCeeehhhhHHHHHHHH------HHHHHHHHHHHHHHhhcCCccc
Confidence 9999999888 542211 344555555567778999999999999881 1111 23678889999999999
Q ss_pred HHHHHHHHHHHHhccCchhHHHHHhhchHHHHHHhc---CCChHHHHHHHHHHHHHhCChhhHHHHHHcCcHHHHHHHHh
Q 004761 584 RGRKDAATALFNLSIFHENKARIIQAGAVKHLVDLM---DPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVE 660 (732)
Q Consensus 584 ~~~~~Al~aL~nLs~~~~n~~~lv~~G~V~~Ll~lL---~~~~~l~e~al~iL~nLa~~~~~r~~i~~~~~I~~Lv~lL~ 660 (732)
+++..|+.+|.-++ .++.. ..++..+.+.| ++=..-.-..+.+|+.|+..+.. +-.....+|.|...++
T Consensus 314 DVRAVAAetLiPIA-~p~~l-----~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~--a~~dp~LVPRL~PFLR 385 (800)
T 3oc3_A 314 DIKLLSAELLCHFP-ITDSL-----DLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE--LSIPPERLKDIFPCFT 385 (800)
T ss_dssp HHHHHHHHHHTTSC-CSSTH-----HHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT--CCCCSGGGGGTGGGGT
T ss_pred HHHHHHHHHhhhhc-chhhH-----HHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc--cccChHHHHHHHhhhc
Confidence 99999999999888 22111 12344455555 21112244566777887776631 1111245888888999
Q ss_pred cCCHHHHHHHHHHHHHHhcCChHhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHH
Q 004761 661 SGSQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLS 717 (732)
Q Consensus 661 ~~s~~~~e~A~~~L~~L~~~~~~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~ 717 (732)
+.-..+|..++.+|..+. +......+ ...++-..++.+++.+..+.+
T Consensus 386 HtITSVR~AVL~TL~tfL--~~~~LRLI--------FQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 386 SPVPEVRTSILNMVKNLS--EESIDFLV--------AEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp CSSHHHHHHHHHHTTTCC--CHHHHHHH--------HHHHHHCSCHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHH--hhhHHHHH--------HHHHHhCCcHHHHHHHHHHHH
Confidence 999999999999988777 22222222 223444556666666555443
|
| >4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.75 E-value=0.23 Score=50.72 Aligned_cols=185 Identities=16% Similarity=0.138 Sum_probs=118.9
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHhccChhhH--HHHH-hc-CCHHHHHHhhccCCHHHHHHHHHHHHHhhcC--C-c-hH
Q 004761 450 LIEDLNSTSNEIQASAAAELRLLAKHNMENR--MIIG-NC-GAIPPLLSLLYSEAQLTQEHAVTALLNLSIN--D-E-NK 521 (732)
Q Consensus 450 Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r--~~i~-~~-G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~--~-~-~k 521 (732)
|-+.|.+.++..|..|+..|..+....+... .... .. ...+.+-..+...|..++..++.+|..+... . . .+
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~ 93 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN 93 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 5688999999999999999988775433211 1111 12 3455666788889999999999999887542 1 1 11
Q ss_pred --HHHHHcCCHHHHHHH-HcCCCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhcc
Q 004761 522 --AMIAEAGAIEPLIHV-LKSGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSI 598 (732)
Q Consensus 522 --~~i~~~g~l~~Lv~l-L~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~ 598 (732)
....-...++.|+.- |.++...++..|..++..+....... ..+++.++..+.+.++.++..++..|..+..
T Consensus 94 ~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~-----~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~ 168 (278)
T 4ffb_C 94 AHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI-----TQSVELVIPFFEKKLPKLIAAAANCVYELMA 168 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS-----HHHHHHHGGGGGCSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH-----HHHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence 122234467777764 67777888888887776664321111 1235667777888899999999999987754
Q ss_pred CchhH---HHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCC
Q 004761 599 FHENK---ARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTV 639 (732)
Q Consensus 599 ~~~n~---~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~ 639 (732)
.-+.. ....-..+++.+..+| +.+..+++.|..++..+-..
T Consensus 169 ~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~ 213 (278)
T 4ffb_C 169 AFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKV 213 (278)
T ss_dssp HHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC
T ss_pred HhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 21110 1111123444556666 78899999999998887654
|
| >3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=95.44 E-value=0.0028 Score=65.80 Aligned_cols=47 Identities=19% Similarity=0.539 Sum_probs=38.0
Q ss_pred ccccccCcccCCC----cee----cCCCcccchHHHHHHHhcC----------CCCCCCCCCCCC
Q 004761 239 YFRCPLSLELMID----PVI----VASGQTYERVFIQKWLDHG----------LNICPKTRQTLA 285 (732)
Q Consensus 239 ~f~Cpi~~~lm~d----PV~----~~~g~ty~r~~I~~~~~~~----------~~~cP~~~~~l~ 285 (732)
...|+||+..+.+ |-. ..|||.|-..||.+||... ..+||.|+++++
T Consensus 308 ~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 308 ELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp CCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred CccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 3469999999988 543 3699999999999999742 146999999875
|
| >3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=95.30 E-value=0.013 Score=49.55 Aligned_cols=51 Identities=8% Similarity=0.046 Sum_probs=40.1
Q ss_pred ccccCcccCCCce-ecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCcc
Q 004761 241 RCPLSLELMIDPV-IVASGQTYERVFIQKWLDHGLNICPKTRQTLAHTNLIP 291 (732)
Q Consensus 241 ~Cpi~~~lm~dPV-~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~p 291 (732)
.||+|.-.+..=. ++||+|.||-.|+..|...+..+||.|+.++..-+..+
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~rVe~~~ 54 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQRIEQCT 54 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSEEEEEE
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeeeeEEec
Confidence 4777777665544 57999999999999999888789999999876533333
|
| >3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.18 E-value=0.013 Score=61.68 Aligned_cols=63 Identities=17% Similarity=0.268 Sum_probs=53.1
Q ss_pred CccccccCcccCCCcee-cCCCcc--cchHHHHHHHh-cCCCCCCCCCCCCCCCCCcccHHHHHHHH
Q 004761 238 PYFRCPLSLELMIDPVI-VASGQT--YERVFIQKWLD-HGLNICPKTRQTLAHTNLIPNYTVKAMIE 300 (732)
Q Consensus 238 ~~f~Cpi~~~lm~dPV~-~~~g~t--y~r~~I~~~~~-~~~~~cP~~~~~l~~~~l~pn~~l~~~i~ 300 (732)
-.+.|||++..|+.||- ..|.|. ||...+..... .+...||+|++.+...+|+.+.-+...+.
T Consensus 248 vSL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~dL~ID~~~~~IL~ 314 (371)
T 3i2d_A 248 MSLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENLAISEFVDDILQ 314 (371)
T ss_dssp EESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGGEEEBHHHHHHHT
T ss_pred EeecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHHHeeEcHHHHHHHH
Confidence 36899999999999998 579997 99988877654 45678999999999999999987777654
|
| >3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.13 E-value=0.65 Score=48.17 Aligned_cols=185 Identities=11% Similarity=0.037 Sum_probs=108.7
Q ss_pred CHHHHHHhhccCCHHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHH----HHHcC-CCHHHHHHHHHHHHHhccCchhH
Q 004761 488 AIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAMIAEAGAIEPLI----HVLKS-GNGGAKENSAAALFSLSVLEEYK 562 (732)
Q Consensus 488 ~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k~~i~~~g~l~~Lv----~lL~~-~~~e~~~~Aa~~L~~Ls~~~~~k 562 (732)
.+..|..++ +...+.+--++-+|.-+..++.....+.+.+.-..++ ..+.. +.+..+..++.+++|+..+...+
T Consensus 104 ~l~~l~kil-~WP~~~~fPvLDLlRl~~l~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g~ 182 (304)
T 3ebb_A 104 QLQILWKAI-NCPEDIVFPALDILRLSIKHPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQAGQ 182 (304)
T ss_dssp HHHHHHHHH-TSCTTTCHHHHHHHHHHTTSHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHHHH
T ss_pred HHHHHHHHH-cCCHHhHHHHHHHHHHHHcCccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCchhH
Confidence 345566665 3333344445555554444444444444332222333 33322 34667899999999999988888
Q ss_pred HHHHhc--chHHHHHHhhcCCCHHHHHHHHHHHHHhccCchh-HHHHHhhchHHHHHHhc--CCChHHHHHHHHHHHHHh
Q 004761 563 AKIGRS--GAVKALVDLLGSGTLRGRKDAATALFNLSIFHEN-KARIIQAGAVKHLVDLM--DPSTGMVDKAVALLANLS 637 (732)
Q Consensus 563 ~~i~~~--g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~n-~~~lv~~G~V~~Ll~lL--~~~~~l~e~al~iL~nLa 637 (732)
..+... .+++.+...+...+...+..+...++|++...-+ +..=....++..+..++ ..+.+....++-+|++|+
T Consensus 183 ~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~EalyR~LvALGtL~ 262 (304)
T 3ebb_A 183 KLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATFRLLVALGTLI 262 (304)
T ss_dssp HHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 777643 5666666666667888999999999999874211 10000112444444455 457788899999999998
Q ss_pred CChhhHHHHHHcCcHHHHHHHHhc--CCHHHHHHHHHH
Q 004761 638 TVGEGRLAIAREGGIPSLVEVVES--GSQRGKENAASI 673 (732)
Q Consensus 638 ~~~~~r~~i~~~~~I~~Lv~lL~~--~s~~~~e~A~~~ 673 (732)
..+.....+.+.-++...++-+.+ ..+++.+.|-.+
T Consensus 263 ~~~~~~~~lak~l~~~~~v~~~~~~~~~~kv~~~~~~~ 300 (304)
T 3ebb_A 263 SDDSNAVQLAKSLGVDSQIKKYSSVSEPAKVSECCRFI 300 (304)
T ss_dssp TTCHHHHHHHHHTTHHHHGGGGGGCCSSHHHHHHHHHH
T ss_pred hCChhHHHHHHHcCHHHHHHHHHhCCCchhHHHHHHHH
Confidence 765544555554445544444433 345555544333
|
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=94.94 E-value=0.75 Score=46.63 Aligned_cols=178 Identities=13% Similarity=0.087 Sum_probs=117.3
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcC-CHHHHHHhhccCCHHHHHHHHHHHHHhhc---CCchHHH
Q 004761 448 KKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCG-AIPPLLSLLYSEAQLTQEHAVTALLNLSI---NDENKAM 523 (732)
Q Consensus 448 ~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G-~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~---~~~~k~~ 523 (732)
+.+...|-+.+...+..|+..|......+++ .++...+ .++.+.--+.+.+..+...++.+|..+.. ..+.+..
T Consensus 49 ~~~~~~lfs~d~k~~~~ale~L~~~l~~~~~--~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~ 126 (266)
T 2of3_A 49 VSLMSQLFHKDFKQHLAALDSLVRLADTSPR--SLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMS 126 (266)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHHCHH--HHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhhhChH--HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccch
Confidence 3566667777888888899888887654432 2222211 12222222346788888888888776521 1111111
Q ss_pred HHH-cCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhccCchh
Q 004761 524 IAE-AGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFHEN 602 (732)
Q Consensus 524 i~~-~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~n 602 (732)
-.+ .-.+|.|+.-+.+....+|..+-.+|..+.. ......+++.+++-+++.+.+.+..++..+..+-...+.
T Consensus 127 ~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~------v~~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~ 200 (266)
T 2of3_A 127 QEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSD------VVGPLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGI 200 (266)
T ss_dssp HHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHH------HHCHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH------HCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCC
Confidence 111 2368889998877778888888777766542 112235678888888999999999999998888553322
Q ss_pred HHHHHhhchH---HHHHHhc-CCChHHHHHHHHHHHHHh
Q 004761 603 KARIIQAGAV---KHLVDLM-DPSTGMVDKAVALLANLS 637 (732)
Q Consensus 603 ~~~lv~~G~V---~~Ll~lL-~~~~~l~e~al~iL~nLa 637 (732)
. ...++ +.+..++ +.+..+++.|+.++..+-
T Consensus 201 ~----~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y 235 (266)
T 2of3_A 201 S----PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACF 235 (266)
T ss_dssp G----GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHH
T ss_pred C----ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 2 24467 9999999 889999999998887653
|
| >3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.69 E-value=2.2 Score=44.20 Aligned_cols=137 Identities=12% Similarity=0.069 Sum_probs=95.4
Q ss_pred CCHHHHHHHHHHHHHhccCchhHHHHHh--hchHHHHHHhc-CCChHHHHHHHHHHHHHhCChh---hHHHHHHcCcHHH
Q 004761 581 GTLRGRKDAATALFNLSIFHENKARIIQ--AGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGE---GRLAIAREGGIPS 654 (732)
Q Consensus 581 ~~~~~~~~Al~aL~nLs~~~~n~~~lv~--~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~---~r~~i~~~~~I~~ 654 (732)
..+..+..+++++.|+-.++..+..+.. ..+++.+...+ +.+..++..+..++.|++..-- ..+.. ...+..
T Consensus 160 ~~p~n~ml~lR~l~NlF~~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~--~~ll~~ 237 (304)
T 3ebb_A 160 GKPANQLLALRTFCNCFVGQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGK--AQCLSL 237 (304)
T ss_dssp SCHHHHHHHHHHHHHGGGSHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHH--HHHHHH
T ss_pred CChHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHH--HHHHHH
Confidence 3566788999999999999888887765 24555566555 6678888888889999975311 00110 113344
Q ss_pred HHHHHhc-CCHHHHHHHHHHHHHHhcCChHhHHHHHhCCCHHHHHHchhc-CChHHHHHHHHHHHHh
Q 004761 655 LVEVVES-GSQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQS-GTPRAKEKAQQLLSHF 719 (732)
Q Consensus 655 Lv~lL~~-~s~~~~e~A~~~L~~L~~~~~~~~~~v~~~G~i~~L~~Ll~~-g~~~~k~kA~~lL~~l 719 (732)
+..+++. .+.++...++.+|.+|...+++..+.+...|+-..+-.+... ..+++++.|+.+|.+|
T Consensus 238 l~~il~~~~d~EalyR~LvALGtL~~~~~~~~~lak~l~~~~~v~~~~~~~~~~kv~~~~~~~~~~l 304 (304)
T 3ebb_A 238 ISTILEVVQDLEATFRLLVALGTLISDDSNAVQLAKSLGVDSQIKKYSSVSEPAKVSECCRFILNLL 304 (304)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHGGGGGGCCSSHHHHHHHHHHHTTC
T ss_pred HHHHHhccCCHHHHHHHHHHHHHHHhCChhHHHHHHHcCHHHHHHHHHhCCCchhHHHHHHHHHHhC
Confidence 4455543 578888899999999998777766666667777666666665 3578999998888653
|
| >4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.36 E-value=0.61 Score=47.44 Aligned_cols=185 Identities=11% Similarity=0.045 Sum_probs=119.3
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHhccCch---hHHHHHh-c-chHHHHHHhhcCCCHHHHHHHHHHHHHhccCch------
Q 004761 533 LIHVLKSGNGGAKENSAAALFSLSVLEE---YKAKIGR-S-GAVKALVDLLGSGTLRGRKDAATALFNLSIFHE------ 601 (732)
Q Consensus 533 Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~---~k~~i~~-~-g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~------ 601 (732)
|-..|.+.+...|..|.-.|..+..... ....... . ...+.+-..+.+.+..+...++.+|..++..-.
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~ 93 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN 93 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 5567888888999988888876543211 1111111 2 344566678888999999999999988865321
Q ss_pred hHHHHHhhchHHHHHHh-c-CCChHHHHHHHHHHHHHhCChhhHHHHHHcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Q 004761 602 NKARIIQAGAVKHLVDL-M-DPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCL 679 (732)
Q Consensus 602 n~~~lv~~G~V~~Ll~l-L-~~~~~l~e~al~iL~nLa~~~~~r~~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~ 679 (732)
......-..+++.|++- | +....+++.++.++..++........ .+..++..+.+.++..+..++..|..+..
T Consensus 94 ~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~-----~~e~l~~~l~~Knpkv~~~~l~~l~~~l~ 168 (278)
T 4ffb_C 94 AHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQ-----SVELVIPFFEKKLPKLIAAAANCVYELMA 168 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHH-----HHHHHGGGGGCSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHH-----HHHHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence 12233345678888875 6 77788888888888776542211111 23455566778899999999988887654
Q ss_pred C-ChHh--HHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHhhccc
Q 004761 680 H-SPKF--CTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFRNQR 723 (732)
Q Consensus 680 ~-~~~~--~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~~~ 723 (732)
. +... ....+. .+++.+..++.+.++.+|..|..++..+-.+-
T Consensus 169 ~fg~~~~~~k~~l~-~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~ 214 (278)
T 4ffb_C 169 AFGLTNVNVQTFLP-ELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVT 214 (278)
T ss_dssp HHTTTTCCHHHHHH-HHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC-
T ss_pred HhCCCcCCchhHHH-HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHh
Confidence 2 1111 111111 24556777888889999999999988776653
|
| >4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B | Back alignment and structure |
|---|
Probab=94.23 E-value=0.036 Score=58.30 Aligned_cols=64 Identities=17% Similarity=0.263 Sum_probs=54.2
Q ss_pred CCccccccCcccCCCcee-cCCCcc--cchHHHHHHHh-cCCCCCCCCCCCCCCCCCcccHHHHHHHH
Q 004761 237 PPYFRCPLSLELMIDPVI-VASGQT--YERVFIQKWLD-HGLNICPKTRQTLAHTNLIPNYTVKAMIE 300 (732)
Q Consensus 237 p~~f~Cpi~~~lm~dPV~-~~~g~t--y~r~~I~~~~~-~~~~~cP~~~~~l~~~~l~pn~~l~~~i~ 300 (732)
.-.+.|||++..|+.||- ..|.|. ||...+..... .+...||+|++.+...+|..+.-+...+.
T Consensus 213 ~vSL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~dL~ID~~~~~IL~ 280 (360)
T 4fo9_A 213 RVSLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYESLILDGLFMEILN 280 (360)
T ss_dssp EEESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGGEEEBHHHHHHHT
T ss_pred EEeeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHHeEEcHHHHHHHH
Confidence 347899999999999998 579988 99998888765 45678999999999999999887777765
|
| >1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A* | Back alignment and structure |
|---|
Probab=94.09 E-value=1.7 Score=45.21 Aligned_cols=196 Identities=13% Similarity=0.076 Sum_probs=142.7
Q ss_pred CchHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHH----HHh-cCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCC
Q 004761 444 TPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMI----IGN-CGAIPPLLSLLYSEAQLTQEHAVTALLNLSIND 518 (732)
Q Consensus 444 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~----i~~-~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~ 518 (732)
.+.+..|+..|..-+.+.+..+.....++.+.....+-. +.. ...+..|+.-. +++++--.+-..|..+..++
T Consensus 77 ~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gY--e~~diAl~~G~mLRecir~e 154 (341)
T 1upk_A 77 SGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGY--ESPEIALNCGIMLRECIRHE 154 (341)
T ss_dssp HSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGG--GSTTTHHHHHHHHHHHHTSH
T ss_pred hCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhh--ccchhHhHHHHHHHHHHHhH
Confidence 456778888888888899998888888888765433222 221 12222222222 24455556666777777777
Q ss_pred chHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccC-chhH-HHHHhc--chHHHHHHhhcCCCHHHHHHHHHHHH
Q 004761 519 ENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVL-EEYK-AKIGRS--GAVKALVDLLGSGTLRGRKDAATALF 594 (732)
Q Consensus 519 ~~k~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~-~~~k-~~i~~~--g~i~~Lv~lL~~~~~~~~~~Al~aL~ 594 (732)
.....+...+.+..+...+..++-++...|..++..|... .... ..+... ..+...-.||.+++--+++.+++.|.
T Consensus 155 ~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKLLg 234 (341)
T 1upk_A 155 PLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLG 234 (341)
T ss_dssp HHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHHHH
Confidence 7777777878888999999999999999999999887543 2222 222222 46677778999999999999999999
Q ss_pred HhccCchhHHHHHh----hchHHHHHHhc-CCChHHHHHHHHHHHHHhCChh
Q 004761 595 NLSIFHENKARIIQ----AGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGE 641 (732)
Q Consensus 595 nLs~~~~n~~~lv~----~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~ 641 (732)
.|-..+.|...|.. ..-+..++.+| +.+..++-.|..++...+.+|.
T Consensus 235 elLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~ 286 (341)
T 1upk_A 235 ELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPN 286 (341)
T ss_dssp HHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSS
T ss_pred HHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCC
Confidence 99999888776554 46778888888 8899999999999998776653
|
| >1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A | Back alignment and structure |
|---|
Probab=93.54 E-value=1.7 Score=52.52 Aligned_cols=248 Identities=12% Similarity=0.082 Sum_probs=140.7
Q ss_pred HHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhc------cCCHHHHHHHHHHHHHhhcCCc-------------h
Q 004761 460 EIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLY------SEAQLTQEHAVTALLNLSINDE-------------N 520 (732)
Q Consensus 460 ~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~------s~~~~v~~~A~~~L~nLs~~~~-------------~ 520 (732)
..+..|...|..++..-. ..+.. -.++.+...+. +.+...++.|+.++..++.... .
T Consensus 376 s~R~aa~~~L~~l~~~~~---~~v~~-~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~ 451 (960)
T 1wa5_C 376 TRRRACTDFLKELKEKNE---VLVTN-IFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLN 451 (960)
T ss_dssp CHHHHHHHHHHHHHHHCH---HHHHH-HHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCC
T ss_pred CcHHHHHHHHHHHHHHcc---hhHHH-HHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCccccccccc
Confidence 456778888888886543 11211 12333334444 4567889999999999874311 1
Q ss_pred HHHHHHcCCHHHHHHHHcCC---CHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 004761 521 KAMIAEAGAIEPLIHVLKSG---NGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLS 597 (732)
Q Consensus 521 k~~i~~~g~l~~Lv~lL~~~---~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs 597 (732)
-..+. ...++..|.+. .+-+|..|+++|..++..- .+.. -..+++.++..|.+.++.++..|+.||.+++
T Consensus 452 l~~~l----~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~-~~~~--l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~ 524 (960)
T 1wa5_C 452 VVDFF----TKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL-TKAQ--LIELMPILATFLQTDEYVVYTYAAITIEKIL 524 (960)
T ss_dssp HHHHH----HHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS-CHHH--HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred HHHHH----HHHhHHHhcCCCCCCceehHHHHHHHHHHHhhC-CHHH--HHHHHHHHHHHhCCCChhHHHHHHHHHHHHH
Confidence 11111 11233345555 7889999999999987632 1221 2357888888888888999999999999998
Q ss_pred cCch---------hHHHHHh--hchHHHHHHhc-CCC---hH--HHHHHHHHHHHHhCCh--hhHHHHHHcCcHHHHHHH
Q 004761 598 IFHE---------NKARIIQ--AGAVKHLVDLM-DPS---TG--MVDKAVALLANLSTVG--EGRLAIAREGGIPSLVEV 658 (732)
Q Consensus 598 ~~~~---------n~~~lv~--~G~V~~Ll~lL-~~~---~~--l~e~al~iL~nLa~~~--~~r~~i~~~~~I~~Lv~l 658 (732)
...+ .+..+.. ..+++.|+.++ ... .. ..+.++.+|..++..- +... ... ..++.|...
T Consensus 525 ~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p-~~~-~l~~~L~~~ 602 (960)
T 1wa5_C 525 TIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQP-LFP-QLLAQFIEI 602 (960)
T ss_dssp TCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGG-GHH-HHHHHHHHH
T ss_pred hcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhh-HHH-HHHHHHHHH
Confidence 7421 2222322 45666677777 320 11 2244555555443211 1100 000 123444444
Q ss_pred Hh----c-CCHHHHHHHHHHHHHHhcC-ChHhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHhhc
Q 004761 659 VE----S-GSQRGKENAASILLQLCLH-SPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFRN 721 (732)
Q Consensus 659 L~----~-~s~~~~e~A~~~L~~L~~~-~~~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~ 721 (732)
+. + .++.....++.+|..++.. +++....+ ...++|.+..+++.........+..++..+-+
T Consensus 603 l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~-~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~ 670 (960)
T 1wa5_C 603 VTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLL-VDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVE 670 (960)
T ss_dssp HHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHH-HHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHH-HHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHH
Confidence 32 2 3556667788888887775 44433333 34467888888887655555556665555543
|
| >2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.43 E-value=1.9 Score=43.13 Aligned_cols=146 Identities=18% Similarity=0.100 Sum_probs=109.7
Q ss_pred HHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCC-----HHHHHHHHHHHHHhhcCCc--hHHHHHHcCCHHHHH
Q 004761 462 QASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEA-----QLTQEHAVTALLNLSINDE--NKAMIAEAGAIEPLI 534 (732)
Q Consensus 462 ~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~-----~~v~~~A~~~L~nLs~~~~--~k~~i~~~g~l~~Lv 534 (732)
.-.|+..+.-+|.+ ++.|..+.++...-.|-.+|+..+ .-++-.++.+++.|...++ ....+.+.+.++..+
T Consensus 73 VcnaLaLlQcvAsh-petr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCL 151 (268)
T 2fv2_A 73 VCNALALLQCVASH-PETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCL 151 (268)
T ss_dssp HHHHHHHHHHHHHC-TTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHcC-cchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHH
Confidence 34677777888865 588999999887777888886532 4577888889988876533 345666888999999
Q ss_pred HHHcCCCHHHHHHHHHHHHHhccCchhHHHHHhc--------chHHHHHH-hhcCCCHHHHHHHHHHHHHhccCchhHHH
Q 004761 535 HVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRS--------GAVKALVD-LLGSGTLRGRKDAATALFNLSIFHENKAR 605 (732)
Q Consensus 535 ~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~--------g~i~~Lv~-lL~~~~~~~~~~Al~aL~nLs~~~~n~~~ 605 (732)
+.+..|+.-.+..|+.++..+..++..-..+-.. .++..+|. +.+..+++..+..+++-..|+.++..+..
T Consensus 152 rime~GselSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~rar~a 231 (268)
T 2fv2_A 152 RIMESGSELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREA 231 (268)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHHHHH
Confidence 9999999999999999998888777655444321 23333443 34567899999999999999999888876
Q ss_pred HHh
Q 004761 606 IIQ 608 (732)
Q Consensus 606 lv~ 608 (732)
+..
T Consensus 232 L~~ 234 (268)
T 2fv2_A 232 LRQ 234 (268)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
|
| >2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.19 E-value=0.044 Score=47.01 Aligned_cols=34 Identities=15% Similarity=0.090 Sum_probs=29.6
Q ss_pred CccccccCccc-CCCcee--cCCCcccchHHHHHHHh
Q 004761 238 PYFRCPLSLEL-MIDPVI--VASGQTYERVFIQKWLD 271 (732)
Q Consensus 238 ~~f~Cpi~~~l-m~dPV~--~~~g~ty~r~~I~~~~~ 271 (732)
+++.|+||.+. ..+||. +.||++||+.|++.|..
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~ 38 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHP 38 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSC
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhc
Confidence 56889999964 899999 99999999999999543
|
| >1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A | Back alignment and structure |
|---|
Probab=92.99 E-value=0.95 Score=54.71 Aligned_cols=217 Identities=10% Similarity=0.060 Sum_probs=122.8
Q ss_pred CCCHHHHHHHHHHHHHHhccChhhHHHHHhc-----CCHHH----HHHhhccC---CHHHHHHHHHHHHHhhcCCchHHH
Q 004761 456 STSNEIQASAAAELRLLAKHNMENRMIIGNC-----GAIPP----LLSLLYSE---AQLTQEHAVTALLNLSINDENKAM 523 (732)
Q Consensus 456 s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~-----G~I~~----Lv~lL~s~---~~~v~~~A~~~L~nLs~~~~~k~~ 523 (732)
+.++..+..|+..+..++........ -... ...+. ++..|.+. ++.++..|+++|..++..- .+..
T Consensus 416 ~~~w~~reaal~algaia~~~~~~~~-~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~-~~~~ 493 (960)
T 1wa5_C 416 SKNWKFKDLYIYLFTALAINGNITNA-GVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL-TKAQ 493 (960)
T ss_dssp --CHHHHHHHHHHHHHHHBSSCCBTT-BCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS-CHHH
T ss_pred chhHHHHHHHHHHHHHHHHHhccccC-CcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhC-CHHH
Confidence 45677888899999998753210000 0000 12222 33345555 8999999999999987542 1221
Q ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCch---------hHHHHHh--cchHHHHHHhhcCCC---HH--HHH
Q 004761 524 IAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEE---------YKAKIGR--SGAVKALVDLLGSGT---LR--GRK 587 (732)
Q Consensus 524 i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~---------~k~~i~~--~g~i~~Lv~lL~~~~---~~--~~~ 587 (732)
-...++.++..|.+.+..++..|+.+|.+++...+ .+..+.. ...++.|+.++.... +. ...
T Consensus 494 --l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e 571 (960)
T 1wa5_C 494 --LIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENE 571 (960)
T ss_dssp --HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCH
T ss_pred --HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccH
Confidence 22357778888887788899999999999886421 2333332 256777888887641 11 234
Q ss_pred HHHHHHHHhccCc-hhHHHHHhhchHHHHHHhc------CCChHHHHHHHHHHHHHhCC--hhhHHHHHHcCcHHHHHHH
Q 004761 588 DAATALFNLSIFH-ENKARIIQAGAVKHLVDLM------DPSTGMVDKAVALLANLSTV--GEGRLAIAREGGIPSLVEV 658 (732)
Q Consensus 588 ~Al~aL~nLs~~~-~n~~~lv~~G~V~~Ll~lL------~~~~~l~e~al~iL~nLa~~--~~~r~~i~~~~~I~~Lv~l 658 (732)
.++.+|..++..- +.-.. .-..+++.|+..+ ..+......++.+|..++.. ++....+ ....++.+..+
T Consensus 572 ~l~~al~~vv~~~~~~~~p-~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~-~~~~~p~~~~i 649 (960)
T 1wa5_C 572 FLMRSIFRVLQTSEDSIQP-LFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLL-VDSMMPTFLTV 649 (960)
T ss_dssp HHHHHHHHHHHHHTTTTGG-GHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHH-HHHHHHHHHHH
Confidence 5566666554321 11111 1123445555555 12445556677777777653 2222222 23356777777
Q ss_pred HhcCCHHHHHHHHHHHHHHh
Q 004761 659 VESGSQRGKENAASILLQLC 678 (732)
Q Consensus 659 L~~~s~~~~e~A~~~L~~L~ 678 (732)
+........+.+..++..+.
T Consensus 650 L~~~~~~~~~~~~~i~~~l~ 669 (960)
T 1wa5_C 650 FSEDIQEFIPYVFQIIAFVV 669 (960)
T ss_dssp HHTTCTTTHHHHHHHHHHHH
T ss_pred HHhhhHhhHHHHHHHHHHHH
Confidence 76654445555666655444
|
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=91.46 E-value=2 Score=43.49 Aligned_cols=177 Identities=14% Similarity=0.060 Sum_probs=108.7
Q ss_pred HHHhhccCCHHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHH----HHcCCCHHHHHHHHHHHHHhcc---CchhHHH
Q 004761 492 LLSLLYSEAQLTQEHAVTALLNLSINDENKAMIAEAGAIEPLIH----VLKSGNGGAKENSAAALFSLSV---LEEYKAK 564 (732)
Q Consensus 492 Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k~~i~~~g~l~~Lv~----lL~~~~~e~~~~Aa~~L~~Ls~---~~~~k~~ 564 (732)
+...|.+.|.+-+..|+..|..... .+...+.. .++.++. .+.+.+..+...++.+|..+.. ..+++-.
T Consensus 51 ~~~~lfs~d~k~~~~ale~L~~~l~--~~~~~~~~--~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~ 126 (266)
T 2of3_A 51 LMSQLFHKDFKQHLAALDSLVRLAD--TSPRSLLS--NSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMS 126 (266)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHHHH--HCHHHHHH--THHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHhh--hChHHHHH--HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccch
Confidence 4455556676666667666654321 12222221 2333333 2335566666666666655421 1111111
Q ss_pred HHh-cchHHHHHHhhcCCCHHHHHHHHHHHHHhcc-CchhHHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCChh
Q 004761 565 IGR-SGAVKALVDLLGSGTLRGRKDAATALFNLSI-FHENKARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGE 641 (732)
Q Consensus 565 i~~-~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~-~~~n~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~ 641 (732)
-.+ .-.+|.|++-+.+....++..+-.++..++. ++. ..+++.+++-+ +.+...++.++..+..+-...
T Consensus 127 ~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~-------~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~- 198 (266)
T 2of3_A 127 QEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGP-------LKMTPMLLDALKSKNARQRSECLLVIEYYITNA- 198 (266)
T ss_dssp HHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH-------HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCH-------HHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhc-
Confidence 111 2468999999988888888877777766543 222 23566677767 778899999999888874422
Q ss_pred hHHHHHHcCcH---HHHHHHHhcCCHHHHHHHHHHHHHHhcCChH
Q 004761 642 GRLAIAREGGI---PSLVEVVESGSQRGKENAASILLQLCLHSPK 683 (732)
Q Consensus 642 ~r~~i~~~~~I---~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~ 683 (732)
|-. ...++ +.+.+++.+.+..++..|+.++..+...-++
T Consensus 199 G~~---~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd 240 (266)
T 2of3_A 199 GIS---PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGD 240 (266)
T ss_dssp CSG---GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTT
T ss_pred CCC---ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhH
Confidence 111 23468 9999999999999999999999988775333
|
| >3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A | Back alignment and structure |
|---|
Probab=88.89 E-value=11 Score=41.21 Aligned_cols=128 Identities=20% Similarity=0.187 Sum_probs=89.7
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCchHHHHHHc
Q 004761 448 KKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAMIAEA 527 (732)
Q Consensus 448 ~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k~~i~~~ 527 (732)
..++...+ ++...++-|+..|....++-++... -+|..++.+...+|..++.+|+..|..+|.+ ++...
T Consensus 32 ~~Il~~~k-g~~k~K~LaaQ~I~kffk~FP~l~~-----~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~~i~k---- 100 (507)
T 3u0r_A 32 QVILDGVK-GGTKEKRLAAQFIPKFFKHFPELAD-----SAINAQLDLCEDEDVSIRRQAIKELPQFATG-ENLPR---- 100 (507)
T ss_dssp HHHHHGGG-SCHHHHHHHHHHHHHHGGGCGGGHH-----HHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-TCHHH----
T ss_pred HHHHHhcC-CCHHHHHHHHHHHHHHHhhChhhHH-----HHHHHHHHHHhcccHHHHHHHHHhhHHHhhh-hhhhh----
Confidence 44555444 4688899999999999999887554 4677899999999999999999999999988 55443
Q ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHH
Q 004761 528 GAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALF 594 (732)
Q Consensus 528 g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~ 594 (732)
..+.|+++|...+..-....-.+|..|...+ ..+.+..|..-+..++..+++.++..|.
T Consensus 101 -iaDvL~QlLqtdd~~E~~~V~~sL~sllk~D-------pk~tl~~lf~~i~~~~e~~Rer~lkFi~ 159 (507)
T 3u0r_A 101 -VADILTQLLQTDDSAEFNLVNNALLSIFKMD-------AKGTLGGLFSQILQGEDIVRERAIKFLS 159 (507)
T ss_dssp -HHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-------HHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred -HHHHHHHHHhccchHHHHHHHHHHHHHHhcC-------hHHHHHHHHHHHcccchHHHHHHHHHHH
Confidence 3567889999877554443333333332211 1244555655555567778888777775
|
| >2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=87.74 E-value=14 Score=36.27 Aligned_cols=168 Identities=17% Similarity=0.165 Sum_probs=100.4
Q ss_pred HHHHhcCCC-HHHHHHHHHHHHHHhccCh-hhHHHHHhcCCHHHHHHhhcc----C-------CHHHHHHHHHHHHHhhc
Q 004761 450 LIEDLNSTS-NEIQASAAAELRLLAKHNM-ENRMIIGNCGAIPPLLSLLYS----E-------AQLTQEHAVTALLNLSI 516 (732)
Q Consensus 450 Lv~~L~s~~-~~~~~~Al~~L~~La~~~~-~~r~~i~~~G~I~~Lv~lL~s----~-------~~~v~~~A~~~L~nLs~ 516 (732)
.|+.|++.. .+....-+..|+..-+.++ ..-..+ ..||+..|+.+|.. . +...+..++.+|..+..
T Consensus 5 yi~~L~~~~~~~~~~~~L~~L~v~Lrt~~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn 83 (233)
T 2f31_A 5 YIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN 83 (233)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHhccchHHHHHHHHHHhHhHhcCCcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhC
Confidence 455555432 2222334444443333333 223333 46788888888852 1 35667788888888876
Q ss_pred CCchHHHHH-HcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCch--h-HHHHH----------hcchHHHHHHhhcC-C
Q 004761 517 NDENKAMIA-EAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEE--Y-KAKIG----------RSGAVKALVDLLGS-G 581 (732)
Q Consensus 517 ~~~~k~~i~-~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~--~-k~~i~----------~~g~i~~Lv~lL~~-~ 581 (732)
+..+...+. ..+++..|+..|.+..+.++..++-+|..++..++ + ...+. +..-...+++.++. .
T Consensus 84 ~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~ 163 (233)
T 2f31_A 84 NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGT 163 (233)
T ss_dssp SHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTS
T ss_pred ChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCC
Confidence 666666555 45789999999988889999999888888776543 3 22221 22345667787774 3
Q ss_pred CHHHHHHHHHHHHHhccCch-------hHHHHHhhchHHHHHHh
Q 004761 582 TLRGRKDAATALFNLSIFHE-------NKARIIQAGAVKHLVDL 618 (732)
Q Consensus 582 ~~~~~~~Al~aL~nLs~~~~-------n~~~lv~~G~V~~Ll~l 618 (732)
+.+.+..++..+-.+...++ -|..+...|..+.+-.+
T Consensus 164 ~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~~l 207 (233)
T 2f31_A 164 SIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQEL 207 (233)
T ss_dssp CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHHHHH
Confidence 45555555555555554443 23445566766665444
|
| >2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=87.43 E-value=14 Score=44.37 Aligned_cols=210 Identities=15% Similarity=0.091 Sum_probs=117.7
Q ss_pred CCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhh---c--cCCHHHHHHHHHHHHHhhcC-CchHHHHHHcCCH
Q 004761 457 TSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLL---Y--SEAQLTQEHAVTALLNLSIN-DENKAMIAEAGAI 530 (732)
Q Consensus 457 ~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL---~--s~~~~v~~~A~~~L~nLs~~-~~~k~~i~~~g~l 530 (732)
.++..+..|+..+..++..-.... ...++.++.++ . ..++.++..++++|..++.. ..+...+ ...+
T Consensus 476 ~~w~~~eaal~~l~~iae~~~~~~-----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l--~~vl 548 (971)
T 2x1g_F 476 THWTKLEACIYSFQSVAEHFGGEE-----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYI--PPAI 548 (971)
T ss_dssp TCCHHHHHHHHHHHHTTTC-----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CH--HHHH
T ss_pred CcHHHHHHHHHHHHHHHhhcChhh-----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHH--HHHH
Confidence 466788899999999986543221 13344444433 2 23789999999999988742 1121111 1245
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHHh--cchHHHHHHhhcCC--CHHHHHHHHHHHHHhccC-c-hhHH
Q 004761 531 EPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGR--SGAVKALVDLLGSG--TLRGRKDAATALFNLSIF-H-ENKA 604 (732)
Q Consensus 531 ~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~--~g~i~~Lv~lL~~~--~~~~~~~Al~aL~nLs~~-~-~n~~ 604 (732)
+.|+..|. +.++..|+.++.+++. +.+..+.. ...+..|..++..+ +...+..+..++..++.. + +.+.
T Consensus 549 ~~l~~~l~---~~v~~~A~~al~~l~~--~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~ 623 (971)
T 2x1g_F 549 NLLVRGLN---SSMSAQATLGLKELCR--DCQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIP 623 (971)
T ss_dssp HHHHHHHH---SSCHHHHHHHHHHHHH--HCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHH
T ss_pred HHHHHHhC---hHHHHHHHHHHHHHHH--HHHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHH
Confidence 66666663 6788999999999984 33444443 26677777888763 467788888888887653 2 3333
Q ss_pred HHHhhchHHHHHHhc----C-C--ChHHHHHHHHHHHHHh---CChhh-----H------HHH--HHcCcHHHHHHHHhc
Q 004761 605 RIIQAGAVKHLVDLM----D-P--STGMVDKAVALLANLS---TVGEG-----R------LAI--AREGGIPSLVEVVES 661 (732)
Q Consensus 605 ~lv~~G~V~~Ll~lL----~-~--~~~l~e~al~iL~nLa---~~~~~-----r------~~i--~~~~~I~~Lv~lL~~ 661 (732)
..+ ...+++++..+ . . +..........+..|+ ..-.. . ..+ .....++.+..++..
T Consensus 624 ~~~-~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~ 702 (971)
T 2x1g_F 624 KYL-DIIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEM 702 (971)
T ss_dssp HHH-HHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHHHTTHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHHHHHh
Confidence 222 23444444433 1 1 2222333333333332 21000 0 000 112356666666653
Q ss_pred --CCHHHHHHHHHHHHHHhc
Q 004761 662 --GSQRGKENAASILLQLCL 679 (732)
Q Consensus 662 --~s~~~~e~A~~~L~~L~~ 679 (732)
.++...+.++.++..++.
T Consensus 703 ~~~~~~v~e~~~~~~~~~~~ 722 (971)
T 2x1g_F 703 WVEEIDVLEAACSAMKHAIT 722 (971)
T ss_dssp TTTCHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHH
Confidence 367889999998888765
|
| >3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B* | Back alignment and structure |
|---|
Probab=87.23 E-value=15 Score=39.23 Aligned_cols=170 Identities=16% Similarity=0.153 Sum_probs=108.0
Q ss_pred HHHHHHhcCCC-HHHHHHHHHHHHHHhccCh-hhHHHHHhcCCHHHHHHhhcc-----------CCHHHHHHHHHHHHHh
Q 004761 448 KKLIEDLNSTS-NEIQASAAAELRLLAKHNM-ENRMIIGNCGAIPPLLSLLYS-----------EAQLTQEHAVTALLNL 514 (732)
Q Consensus 448 ~~Lv~~L~s~~-~~~~~~Al~~L~~La~~~~-~~r~~i~~~G~I~~Lv~lL~s-----------~~~~v~~~A~~~L~nL 514 (732)
...|+.|.++. .+.....+..|+.-.+.++ ..-..+. .+|+..|+.+|.. .+...+..++.+|..+
T Consensus 69 ~~yi~~L~~~~~~~kl~~~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkal 147 (383)
T 3eg5_B 69 MMYIQELRSGLRDMHLLSCLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAF 147 (383)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccchhHHHHHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHH
Confidence 44566666553 2222344555554433333 2323344 6788999988851 2457788888888888
Q ss_pred hcCCchHHHHH-HcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCch--h-HHHHH----------hcchHHHHHHhhcC
Q 004761 515 SINDENKAMIA-EAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEE--Y-KAKIG----------RSGAVKALVDLLGS 580 (732)
Q Consensus 515 s~~~~~k~~i~-~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~--~-k~~i~----------~~g~i~~Lv~lL~~ 580 (732)
..+..+...+. ...++..|+..|.+..+.++..++-+|..++..++ + ...+. +..-+..+++.|+.
T Consensus 148 mN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~ 227 (383)
T 3eg5_B 148 MNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKS 227 (383)
T ss_dssp TSSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTST
T ss_pred hcchhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHc
Confidence 76666666565 45789999999999899999999999988877543 2 22221 22346778888887
Q ss_pred -CCHHHHHHHHHHHHHhccCch-------hHHHHHhhchHHHHHHh
Q 004761 581 -GTLRGRKDAATALFNLSIFHE-------NKARIIQAGAVKHLVDL 618 (732)
Q Consensus 581 -~~~~~~~~Al~aL~nLs~~~~-------n~~~lv~~G~V~~Ll~l 618 (732)
.+.+.+..++..+-.+....+ -|..+...|..+.+-.+
T Consensus 228 ~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~~l 273 (383)
T 3eg5_B 228 GTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQEL 273 (383)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCChHHHHHHH
Confidence 456666666666655555443 23455667877776653
|
| >3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens} | Back alignment and structure |
|---|
Probab=87.23 E-value=0.86 Score=45.46 Aligned_cols=49 Identities=16% Similarity=0.298 Sum_probs=37.7
Q ss_pred ccccccCcccCCCceec-CCCcccchHHHHHHHhcC-CCCCCCCCCCCCCC
Q 004761 239 YFRCPLSLELMIDPVIV-ASGQTYERVFIQKWLDHG-LNICPKTRQTLAHT 287 (732)
Q Consensus 239 ~f~Cpi~~~lm~dPV~~-~~g~ty~r~~I~~~~~~~-~~~cP~~~~~l~~~ 287 (732)
-..|.||.++..-=+.= .||+.|-+.|+.+|+... ...||.|+.+.+..
T Consensus 180 i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp CCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred CCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 34599999987744332 289999999999999753 46899999886553
|
| >2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=86.83 E-value=9.8 Score=37.49 Aligned_cols=144 Identities=17% Similarity=0.190 Sum_probs=92.6
Q ss_pred HHHHHHcCCHHHHHHHHcC----C-------CHHHHHHHHHHHHHhccCchhHHHHHhc-chHHHHHHhhcCCCHHHHHH
Q 004761 521 KAMIAEAGAIEPLIHVLKS----G-------NGGAKENSAAALFSLSVLEEYKAKIGRS-GAVKALVDLLGSGTLRGRKD 588 (732)
Q Consensus 521 k~~i~~~g~l~~Lv~lL~~----~-------~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~-g~i~~Lv~lL~~~~~~~~~~ 588 (732)
...+ ..+|+..|+.+|.. + +......++.+|..+..+......+... +++..|+..|.+.++.++..
T Consensus 37 v~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~ 115 (233)
T 2f31_A 37 VQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMID 115 (233)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHH
T ss_pred HHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCchHHHH
Confidence 3344 35667777776642 1 2345667888888888777666666654 88999999999899999999
Q ss_pred HHHHHHHhccCch--h-HHHHHhh----------chHHHHHHhc--CCChHHHHHHHHHHHHHhCChh---hH----HHH
Q 004761 589 AATALFNLSIFHE--N-KARIIQA----------GAVKHLVDLM--DPSTGMVDKAVALLANLSTVGE---GR----LAI 646 (732)
Q Consensus 589 Al~aL~nLs~~~~--n-~~~lv~~----------G~V~~Ll~lL--~~~~~l~e~al~iL~nLa~~~~---~r----~~i 646 (732)
++..|..+|..++ + ...+.++ .-...+++.+ .........++..+-.+...++ .| .++
T Consensus 116 ~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef 195 (233)
T 2f31_A 116 AAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSEL 195 (233)
T ss_dssp HHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 9999999988764 4 4444332 2445577777 3345566666666666666553 23 333
Q ss_pred HHcCcHHHHHHHHhc-CCHHH
Q 004761 647 AREGGIPSLVEVVES-GSQRG 666 (732)
Q Consensus 647 ~~~~~I~~Lv~lL~~-~s~~~ 666 (732)
.. -|+..+++.++. .++..
T Consensus 196 ~~-~Gl~~il~~l~~~~~~~L 215 (233)
T 2f31_A 196 MR-LGLHQVLQELREIENEDM 215 (233)
T ss_dssp HH-TTHHHHHHHHHHCCCHHH
T ss_pred HH-CChHHHHHHHhccCCHHH
Confidence 44 456566665554 44443
|
| >2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=85.49 E-value=36 Score=40.70 Aligned_cols=209 Identities=12% Similarity=0.021 Sum_probs=115.5
Q ss_pred CCHHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHHH---c--CCCHHHHHHHHHHHHHhccCc-hhHHHHHhcchHH
Q 004761 499 EAQLTQEHAVTALLNLSINDENKAMIAEAGAIEPLIHVL---K--SGNGGAKENSAAALFSLSVLE-EYKAKIGRSGAVK 572 (732)
Q Consensus 499 ~~~~v~~~A~~~L~nLs~~~~~k~~i~~~g~l~~Lv~lL---~--~~~~e~~~~Aa~~L~~Ls~~~-~~k~~i~~~g~i~ 572 (732)
.+...++.|+.+|..++....... ...++.++.++ . +.++.++..++++|..++..- .+...+ ..+++
T Consensus 476 ~~w~~~eaal~~l~~iae~~~~~~----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l--~~vl~ 549 (971)
T 2x1g_F 476 THWTKLEACIYSFQSVAEHFGGEE----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYI--PPAIN 549 (971)
T ss_dssp TCCHHHHHHHHHHHHTTTC----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CH--HHHHH
T ss_pred CcHHHHHHHHHHHHHHHhhcChhh----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHH--HHHHH
Confidence 466788999999998875422111 13344444433 3 246889999999999887421 111111 14667
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhccCchhHHHHHh--hchHHHHHHhc-C--CChHHHHHHHHHHHHHhCC--hhhHHH
Q 004761 573 ALVDLLGSGTLRGRKDAATALFNLSIFHENKARIIQ--AGAVKHLVDLM-D--PSTGMVDKAVALLANLSTV--GEGRLA 645 (732)
Q Consensus 573 ~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~n~~~lv~--~G~V~~Ll~lL-~--~~~~l~e~al~iL~nLa~~--~~~r~~ 645 (732)
.|+..|. +.+...|+.++.+++.. .+..+.. .+++..+..++ . .+......++.++..++.. ++....
T Consensus 550 ~l~~~l~---~~v~~~A~~al~~l~~~--~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~ 624 (971)
T 2x1g_F 550 LLVRGLN---SSMSAQATLGLKELCRD--CQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPK 624 (971)
T ss_dssp HHHHHHH---SSCHHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHH
T ss_pred HHHHHhC---hHHHHHHHHHHHHHHHH--HHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 7777772 67889999999999953 2233332 45666666666 3 3566777777777776542 233322
Q ss_pred HHHcCcHHHHHH----HHhcC--CHHHHHHHHHHHHHHhcC-----Ch-----------HhHHHHHhCCCHHHHHHchhc
Q 004761 646 IAREGGIPSLVE----VVESG--SQRGKENAASILLQLCLH-----SP-----------KFCTLVLQEGAVPPLVGLSQS 703 (732)
Q Consensus 646 i~~~~~I~~Lv~----lL~~~--s~~~~e~A~~~L~~L~~~-----~~-----------~~~~~v~~~G~i~~L~~Ll~~ 703 (732)
... ..++.++. ++... ++..+...+..|..|+.. .. +.... ....+++.+..++..
T Consensus 625 ~~~-~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~i~~~l~~~l~~ 702 (971)
T 2x1g_F 625 YLD-IIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLL-VMQRTMPIFKRIAEM 702 (971)
T ss_dssp HHH-HHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHH-HHHTTHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHH-HHHHHHHHHHHHHHh
Confidence 222 12333333 33332 444445555555554431 10 00111 123467777777754
Q ss_pred C--ChHHHHHHHHHHHHhh
Q 004761 704 G--TPRAKEKAQQLLSHFR 720 (732)
Q Consensus 704 g--~~~~k~kA~~lL~~l~ 720 (732)
. ++.+.+.|..+++.+-
T Consensus 703 ~~~~~~v~e~~~~~~~~~~ 721 (971)
T 2x1g_F 703 WVEEIDVLEAACSAMKHAI 721 (971)
T ss_dssp TTTCHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHH
Confidence 3 5688888888887753
|
| >1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5 | Back alignment and structure |
|---|
Probab=84.18 E-value=0.83 Score=45.79 Aligned_cols=46 Identities=15% Similarity=0.110 Sum_probs=29.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHH
Q 004761 652 IPSLVEVVESGSQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLL 716 (732)
Q Consensus 652 I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL 716 (732)
.+.|..++...+..++..++..| | .+.|..| +..+..++..|...|
T Consensus 196 ~~~L~~Ll~D~d~~VR~~aa~~l-----------------~-~~~L~~L-~D~~~~VR~aa~~~L 241 (244)
T 1lrv_A 196 GDDLLELLHDPDWTVRLAAVEHA-----------------S-LEALREL-DEPDPEVRLAIAGRL 241 (244)
T ss_dssp GGGGGGGGGCSSHHHHHHHHHHS-----------------C-HHHHHHC-CCCCHHHHHHHHCCC
T ss_pred HHHHHHHHcCCCHHHHHHHHHcC-----------------C-HHHHHHc-cCCCHHHHHHHHHHh
Confidence 34555566666666666666553 1 4666667 777788888876544
|
| >3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B* | Back alignment and structure |
|---|
Probab=83.91 E-value=23 Score=37.69 Aligned_cols=139 Identities=17% Similarity=0.197 Sum_probs=94.4
Q ss_pred HHHHHHcCCHHHHHHHHcC-----------CCHHHHHHHHHHHHHhccCchhHHHHHhc-chHHHHHHhhcCCCHHHHHH
Q 004761 521 KAMIAEAGAIEPLIHVLKS-----------GNGGAKENSAAALFSLSVLEEYKAKIGRS-GAVKALVDLLGSGTLRGRKD 588 (732)
Q Consensus 521 k~~i~~~g~l~~Lv~lL~~-----------~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~-g~i~~Lv~lL~~~~~~~~~~ 588 (732)
...+. .+|+..|+.+|.. .+......++.+|..+..+......+... .++..|+..|.+..+.++..
T Consensus 103 V~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~ 181 (383)
T 3eg5_B 103 VQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMID 181 (383)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHH
T ss_pred HHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhCCCchHHHHH
Confidence 45555 6678888888752 12356677888898888777666666655 89999999999999999999
Q ss_pred HHHHHHHhccCch--h-HHHHHh----------hchHHHHHHhc-C-CChHHHHHHHHHHHHHhCChh---hH----HHH
Q 004761 589 AATALFNLSIFHE--N-KARIIQ----------AGAVKHLVDLM-D-PSTGMVDKAVALLANLSTVGE---GR----LAI 646 (732)
Q Consensus 589 Al~aL~nLs~~~~--n-~~~lv~----------~G~V~~Ll~lL-~-~~~~l~e~al~iL~nLa~~~~---~r----~~i 646 (732)
|+..|..+|..++ + ...+++ ..-...+++.| . .+......++..+-.+...++ .| .++
T Consensus 182 aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef 261 (383)
T 3eg5_B 182 AAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSEL 261 (383)
T ss_dssp HHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 9999999998764 3 444433 23456677777 3 455666667777776766543 33 333
Q ss_pred HHcCcHHHHHHHHhc
Q 004761 647 AREGGIPSLVEVVES 661 (732)
Q Consensus 647 ~~~~~I~~Lv~lL~~ 661 (732)
... |+..++..++.
T Consensus 262 ~~~-Gl~~il~~lr~ 275 (383)
T 3eg5_B 262 MRL-GLHQVLQELRE 275 (383)
T ss_dssp HHT-THHHHHHHHTT
T ss_pred HHC-ChHHHHHHHhc
Confidence 344 55555555654
|
| >3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B | Back alignment and structure |
|---|
Probab=81.42 E-value=44 Score=40.44 Aligned_cols=218 Identities=12% Similarity=0.036 Sum_probs=126.2
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhc-cCCHHHHHHHHHHHHHhhc------CC
Q 004761 446 YVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLY-SEAQLTQEHAVTALLNLSI------ND 518 (732)
Q Consensus 446 ~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~-s~~~~v~~~A~~~L~nLs~------~~ 518 (732)
.+..+++.+.+++.+.+..|-..|..+-+.. ++...+..+|. +.+..++..|+.+|.|... .+
T Consensus 17 ~l~~~l~~~~~p~~~~r~~Ae~~L~~~~~~p----------~~~~~l~~iL~~s~~~~vr~~aa~~Lk~~i~~~W~~l~~ 86 (1049)
T 3m1i_C 17 LLDQVVSTFYQGSGVQQKQAQEILTKFQDNP----------DAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLLPN 86 (1049)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHHST----------TGGGGHHHHHHHCSCHHHHHHHHHHHHHHHHHTGGGSCH
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHhCc----------hHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhCccCCH
Confidence 3556666666666777778888887765432 55566666664 4678899999999988742 22
Q ss_pred chHHHHHHcCCHHHHHHHHcCC-----CHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHH
Q 004761 519 ENKAMIAEAGAIEPLIHVLKSG-----NGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATAL 593 (732)
Q Consensus 519 ~~k~~i~~~g~l~~Lv~lL~~~-----~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL 593 (732)
+.+..+. ...+..+...-..+ +..++...+.++..++..+-. -...+.++.|+.+++ .++..+..++.+|
T Consensus 87 ~~~~~ir-~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p---~~Wp~ll~~L~~~~~-~~~~~~~~~l~~L 161 (1049)
T 3m1i_C 87 DHRIGIR-NFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWP---QNWPEFIPELIGSSS-SSVNVCENNMIVL 161 (1049)
T ss_dssp HHHHHHH-HHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTT---TTCTTHHHHHHHHHT-TCHHHHHHHHHHH
T ss_pred HHHHHHH-HHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCc---ccchHHHHHHHHHHc-cChHHHHHHHHHH
Confidence 2333332 22333333322111 244566666666666542111 012378899999986 5566677777777
Q ss_pred HHhccC-----c----hhH-----HHHHh--hchHHHHHHhc--CCChHHHHHHHHHHHHHhCChhhHHHHHHcCcHHHH
Q 004761 594 FNLSIF-----H----ENK-----ARIIQ--AGAVKHLVDLM--DPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSL 655 (732)
Q Consensus 594 ~nLs~~-----~----~n~-----~~lv~--~G~V~~Ll~lL--~~~~~l~e~al~iL~nLa~~~~~r~~i~~~~~I~~L 655 (732)
..|+.. . ..+ ..+.. ..++..+...+ ..+..+...++.++.+....-+. ..+.+...+..+
T Consensus 162 ~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~-~~~~~~~ll~~l 240 (1049)
T 3m1i_C 162 KLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPY-RYIYETNILELL 240 (1049)
T ss_dssp HHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCT-HHHHSSSHHHHH
T ss_pred HHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCH-HHHhhhhHHHHH
Confidence 777631 1 111 11222 12233334444 34567888889888877654432 223445556666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHhcC
Q 004761 656 VEVVESGSQRGKENAASILLQLCLH 680 (732)
Q Consensus 656 v~lL~~~s~~~~e~A~~~L~~L~~~ 680 (732)
.+.+. .++..+..|+.+|..+...
T Consensus 241 ~~~~l-~~~~~~~~a~~~L~~i~~~ 264 (1049)
T 3m1i_C 241 STKFM-TSPDTRAITLKCLTEVSNL 264 (1049)
T ss_dssp HTHHH-HSHHHHHHHHHHHHHHHHC
T ss_pred HHHhC-CCHhHHHHHHHHHHHHHhC
Confidence 63222 2678888899998888764
|
| >2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B | Back alignment and structure |
|---|
Probab=80.63 E-value=44 Score=35.45 Aligned_cols=176 Identities=17% Similarity=0.158 Sum_probs=104.6
Q ss_pred HHHHHhcCCC-HHHHHHHHHHHHHHhccCh-hhHHHHHhcCCHHHHHHhhcc-----------CCHHHHHHHHHHHHHhh
Q 004761 449 KLIEDLNSTS-NEIQASAAAELRLLAKHNM-ENRMIIGNCGAIPPLLSLLYS-----------EAQLTQEHAVTALLNLS 515 (732)
Q Consensus 449 ~Lv~~L~s~~-~~~~~~Al~~L~~La~~~~-~~r~~i~~~G~I~~Lv~lL~s-----------~~~~v~~~A~~~L~nLs 515 (732)
..|+.|.+.. .+.....+..|+..-+.++ ..-..+. .+|+..|+.+|.. .+...+..++.+|..+.
T Consensus 8 ~yv~~L~~~~~~~~~~~~L~~L~v~Lrt~~~~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalm 86 (386)
T 2bnx_A 8 MYIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM 86 (386)
T ss_dssp HHHHHHTSCCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhccchHHHHHHHHHHhHHHhcCCcHHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHh
Confidence 3455555443 2212234444544333333 2223333 5788888888752 14567788888888887
Q ss_pred cCCchHHHHH-HcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCch--h-HHHHH----------hcchHHHHHHhhcC-
Q 004761 516 INDENKAMIA-EAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEE--Y-KAKIG----------RSGAVKALVDLLGS- 580 (732)
Q Consensus 516 ~~~~~k~~i~-~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~--~-k~~i~----------~~g~i~~Lv~lL~~- 580 (732)
.+..+...+. ..+++..|+..|.+..+.++..++-+|..++..++ + ...+. +..-+..+|+.++.
T Consensus 87 N~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~ 166 (386)
T 2bnx_A 87 NNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSG 166 (386)
T ss_dssp SSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTT
T ss_pred CCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcC
Confidence 6665655555 45789999999988888999888888887776543 2 22221 22345668888874
Q ss_pred CCHHHHHHHHHHHHHhccCch-------hHHHHHhhchHHHHHHhc-CCChHH
Q 004761 581 GTLRGRKDAATALFNLSIFHE-------NKARIIQAGAVKHLVDLM-DPSTGM 625 (732)
Q Consensus 581 ~~~~~~~~Al~aL~nLs~~~~-------n~~~lv~~G~V~~Ll~lL-~~~~~l 625 (732)
.+.+.+..++..+-.|...++ -|..+...|..+.+-.+- ..++.+
T Consensus 167 ~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL~~il~~Lr~~~~~~L 219 (386)
T 2bnx_A 167 TSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDM 219 (386)
T ss_dssp SCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHHHHHHHTTCCCHHH
T ss_pred ChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHHHHHhccCChhH
Confidence 445656555555555555443 244566778777765444 344443
|
| >2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B | Back alignment and structure |
|---|
Probab=80.58 E-value=21 Score=37.99 Aligned_cols=142 Identities=15% Similarity=0.152 Sum_probs=91.3
Q ss_pred cchHHHHHHhhcC----C-------CHHHHHHHHHHHHHhccCchhHHHHHh-hchHHHHHHhc-CCChHHHHHHHHHHH
Q 004761 568 SGAVKALVDLLGS----G-------TLRGRKDAATALFNLSIFHENKARIIQ-AGAVKHLVDLM-DPSTGMVDKAVALLA 634 (732)
Q Consensus 568 ~g~i~~Lv~lL~~----~-------~~~~~~~Al~aL~nLs~~~~n~~~lv~-~G~V~~Ll~lL-~~~~~l~e~al~iL~ 634 (732)
.+++..|+.+|.. + +......++.||..|..+..+...++. .+++..|...| .....+...++.+|.
T Consensus 46 ~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~ 125 (386)
T 2bnx_A 46 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLS 125 (386)
T ss_dssp HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence 3556666666531 1 245567788999999888777776665 57888888888 667788888999999
Q ss_pred HHhCChh--h-HHHHHH----------cCcHHHHHHHHhc-CCHHHHHHHHHHHHHHhcCCh--H----hHHHHHhCCCH
Q 004761 635 NLSTVGE--G-RLAIAR----------EGGIPSLVEVVES-GSQRGKENAASILLQLCLHSP--K----FCTLVLQEGAV 694 (732)
Q Consensus 635 nLa~~~~--~-r~~i~~----------~~~I~~Lv~lL~~-~s~~~~e~A~~~L~~L~~~~~--~----~~~~v~~~G~i 694 (732)
.+|..++ | ...+.+ ..-...++..+.. .+.+.+-.+...+-.+....+ + .+..+...|+.
T Consensus 126 alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL~ 205 (386)
T 2bnx_A 126 ALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLH 205 (386)
T ss_dssp HHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHH
T ss_pred HHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChH
Confidence 9988664 6 444432 1235667777764 444555544444444554322 2 44556678887
Q ss_pred HHHHHchhcCChHHH
Q 004761 695 PPLVGLSQSGTPRAK 709 (732)
Q Consensus 695 ~~L~~Ll~~g~~~~k 709 (732)
+.|-.+-..+++...
T Consensus 206 ~il~~Lr~~~~~~L~ 220 (386)
T 2bnx_A 206 QVLQELREIENEDMK 220 (386)
T ss_dssp HHHHHHTTCCCHHHH
T ss_pred HHHHHHhccCChhHH
Confidence 777766655665543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 732 | ||||
| d1t1ha_ | 78 | g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cre | 3e-21 | |
| d1xm9a1 | 457 | a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo | 5e-20 | |
| d1xm9a1 | 457 | a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo | 1e-13 | |
| d1xm9a1 | 457 | a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo | 3e-13 | |
| d1xm9a1 | 457 | a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo | 4e-06 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 1e-18 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 3e-18 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 3e-17 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 2e-16 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 3e-15 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 7e-15 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 8e-15 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 1e-14 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 2e-10 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 1e-07 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 0.002 | |
| d2c2la2 | 80 | g.44.1.2 (A:225-304) STIP1 homology and U box-cont | 1e-16 | |
| d1q1sc_ | 434 | a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus | 3e-13 | |
| d1q1sc_ | 434 | a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus | 6e-09 | |
| d1q1sc_ | 434 | a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus | 1e-08 | |
| d1q1sc_ | 434 | a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus | 1e-05 | |
| d1q1sc_ | 434 | a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus | 2e-04 | |
| d1wa5b_ | 503 | a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S | 4e-12 | |
| d1wa5b_ | 503 | a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S | 6e-07 | |
| d1jm7a_ | 103 | g.44.1.1 (A:) brca1 RING domain {Human (Homo sapie | 1e-11 | |
| d1wgma_ | 98 | g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Hu | 3e-10 | |
| d1xqra1 | 264 | a.118.1.21 (A:87-350) Hsp70-binding protein 1 (Hsp | 1e-07 | |
| d1xqra1 | 264 | a.118.1.21 (A:87-350) Hsp70-binding protein 1 (Hsp | 1e-06 | |
| d1fbva4 | 79 | g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [Ta | 2e-06 | |
| d1rmda2 | 86 | g.44.1.1 (A:1-86) V(D)J recombination activating p | 2e-05 | |
| d2baya1 | 56 | g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 { | 1e-04 | |
| d2vgla_ | 584 | a.118.1.10 (A:) Adaptin alpha C subunit N-terminal | 7e-04 | |
| d1jm7b_ | 97 | g.44.1.1 (B:) bard1 RING domain {Human (Homo sapie | 0.001 |
| >d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 78 | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: U-box domain: E3 ubiquitin ligase PUB14 species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 86.3 bits (213), Expect = 3e-21
Identities = 47/77 (61%), Positives = 57/77 (74%), Gaps = 1/77 (1%)
Query: 233 GVP-IPPYFRCPLSLELMIDPVIVASGQTYERVFIQKWLDHGLNICPKTRQTLAHTNLIP 291
G P P YFRCP+SLELM DPVIV++GQTYER IQKWLD G CPK+++TL H L P
Sbjct: 1 GSPEFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTP 60
Query: 292 NYTVKAMIENWCEENNL 308
NY +K++I WCE N +
Sbjct: 61 NYVLKSLIALWCESNGI 77
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 91.4 bits (225), Expect = 5e-20
Identities = 46/307 (14%), Positives = 88/307 (28%), Gaps = 34/307 (11%)
Query: 447 VKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEH 506
+ K ++ L+S + QA A ++ + + + G I L+ LL S Q Q+
Sbjct: 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQA 63
Query: 507 AVTALLNLSI-NDENKAMIAEAGAIEPLIHVLKSGNG-GAKENSAAALFSLSVLEEYKAK 564
A AL NL + NK I + +L+ ++ L++LS +E K +
Sbjct: 64 AAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEE 123
Query: 565 IGRSGAVKALVDLL---------------GSGTLRGRKDAATALFNLSIFHENKARII-Q 608
+ ++ +A L NLS + +
Sbjct: 124 LIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNY 183
Query: 609 AGAVKHLVDLMDPSTGMVDKAVALLANL----------------STVGEGRLAIAREGGI 652
+G + L+ + + N + +
Sbjct: 184 SGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTE 243
Query: 653 PSLVEVVESGSQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKA 712
S + S + N L +PK + A+ + L A +A
Sbjct: 244 KSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEA 303
Query: 713 QQLLSHF 719
Sbjct: 304 CAGALQN 310
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 71.8 bits (174), Expect = 1e-13
Identities = 41/307 (13%), Positives = 95/307 (30%), Gaps = 32/307 (10%)
Query: 449 KLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQ------L 502
E+ +A LR L+ + + + G I L++ + +
Sbjct: 147 NSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDK 206
Query: 503 TQEHAVTALLNLSINDENKAMIAEAGAIEPLIHVLKSGNGGA----------KENSAAAL 552
+ E+ + L NLS + + + + N L
Sbjct: 207 SVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPL 266
Query: 553 FSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFHE-------NKAR 605
+ + S A++ ++L+G +A + ++
Sbjct: 267 PEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLI 326
Query: 606 IIQAGAVKHLVDLMDPSTGMVDK-AVALLANLSTVGEGRLAIAREGGIPSLVEVVESGSQ 664
++ + + L+ V + +LL+N+S + P + ++ S +
Sbjct: 327 GLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGN-QVFPEVTRLLTSHTG 385
Query: 665 RGK------ENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQS-GTPRAKEKAQQLLS 717
+A + L P+ + ++ L +S +P+A E A+ LLS
Sbjct: 386 NTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLS 445
Query: 718 HFRNQRE 724
+ +E
Sbjct: 446 DMWSSKE 452
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 70.2 bits (170), Expect = 3e-13
Identities = 23/213 (10%), Positives = 65/213 (30%), Gaps = 15/213 (7%)
Query: 403 LPASKELSRRCSKNEKSSELSGEIISECPAASPSRSDEVTTTPYVKKLIEDLNSTSNEIQ 462
+K++K + + +P S + + ++ + + + +
Sbjct: 241 YTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDAT 300
Query: 463 ------ASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSI 516
A + +++I +P + LL S + L N+S
Sbjct: 301 LEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSR 360
Query: 517 NDENKAMIAEAGAIEPLIHVLKSGNGGAK------ENSAAALFSLSVL-EEYKAKIGRSG 569
+ ++ + +L S G ++ + +L + + S
Sbjct: 361 HPLLHRVMGN-QVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSS 419
Query: 570 AVKALVDLL-GSGTLRGRKDAATALFNLSIFHE 601
+ +++L S + + + A L ++ E
Sbjct: 420 MLNNIINLCRSSASPKAAEAARLLLSDMWSSKE 452
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.5 bits (111), Expect = 4e-06
Identities = 13/70 (18%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
Query: 456 STSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYS-EAQLTQEHAVTALLNL 514
S S +I +SA +R L + + + +++L S + E A L ++
Sbjct: 388 SNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDM 447
Query: 515 SINDENKAMI 524
+ E + ++
Sbjct: 448 WSSKELQGVL 457
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 87.6 bits (215), Expect = 1e-18
Identities = 38/205 (18%), Positives = 74/205 (36%), Gaps = 21/205 (10%)
Query: 475 HNMENRMIIGNCGAIPPLLSLLYSEAQLT-QEHAVTALLNLSINDENKAMIAEAGAIEPL 533
+ + +P ++ LL+ + + V + NL++ N A + E GAI L
Sbjct: 343 EAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRL 402
Query: 534 IHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATAL 593
+ +L + + ++ +E + + G AL
Sbjct: 403 VQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGAL------------------- 443
Query: 594 FNLSIFHENKARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGEGRLAIAREGGI 652
L+ N+ I + V L+ P + A +L L+ E AI EG
Sbjct: 444 HILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGAT 503
Query: 653 PSLVEVVESGSQRGKENAASILLQL 677
L E++ S ++ AA++L ++
Sbjct: 504 APLTELLHSRNEGVATYAAAVLFRM 528
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 86.5 bits (212), Expect = 3e-18
Identities = 33/102 (32%), Positives = 44/102 (43%), Gaps = 1/102 (0%)
Query: 455 NSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNL 514
EI L +LA+ NR++I IP + LLYS + Q A L L
Sbjct: 429 GVRMEEIVEGCTGALHILARDV-HNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCEL 487
Query: 515 SINDENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLS 556
+ + E I GA PL +L S N G +AA LF +S
Sbjct: 488 AQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS 529
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 83.4 bits (204), Expect = 3e-17
Identities = 40/166 (24%), Positives = 56/166 (33%), Gaps = 22/166 (13%)
Query: 454 LNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQ--------- 504
L+ S+ A L N + GAIP L+ LL Q TQ
Sbjct: 364 LHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQ 423
Query: 505 -------------EHAVTALLNLSINDENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAA 551
E AL L+ + N+ +I I + +L S + +A
Sbjct: 424 QQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGV 483
Query: 552 LFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLS 597
L L+ +E I GA L +LL S AA LF +S
Sbjct: 484 LCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS 529
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 80.7 bits (197), Expect = 2e-16
Identities = 33/165 (20%), Positives = 65/165 (39%), Gaps = 2/165 (1%)
Query: 447 VKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQL-TQE 505
+ +L + LN + AA + L+K I+ + + ++ + + + T
Sbjct: 19 IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETAR 78
Query: 506 HAVTALLNLSINDENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKI 565
L NLS + E I ++G I L+ +L S + L +L + +E
Sbjct: 79 CTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMA 138
Query: 566 GR-SGAVKALVDLLGSGTLRGRKDAATALFNLSIFHENKARIIQA 609
R +G ++ +V LL ++ L L+ ++ II A
Sbjct: 139 VRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILA 183
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 77.2 bits (188), Expect = 3e-15
Identities = 36/143 (25%), Positives = 62/143 (43%), Gaps = 3/143 (2%)
Query: 487 GAIPPLLSLLYSEAQLTQEHAVTALLNLSINDEN-KAMIAEAGAIEPLIHVLK-SGNGGA 544
AIP L LL E Q+ A + LS + + A++ + ++ ++ + +
Sbjct: 17 RAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVET 76
Query: 545 KENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIF-HENK 603
+A L +LS E I +SG + ALV +LGS A T L NL + K
Sbjct: 77 ARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK 136
Query: 604 ARIIQAGAVKHLVDLMDPSTGMV 626
+ AG ++ +V L++ +
Sbjct: 137 MAVRLAGGLQKMVALLNKTNVKF 159
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 75.7 bits (184), Expect = 7e-15
Identities = 38/160 (23%), Positives = 57/160 (35%), Gaps = 3/160 (1%)
Query: 567 RSGAVKALVDLLGSGTLRGRKDAATALFNLSIFHENKARIIQA-GAVKHLVDLMDPS--T 623
+ A+ L LL AA + LS ++ I+++ V +V M +
Sbjct: 15 ATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDV 74
Query: 624 GMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCLHSPK 683
L NLS EG LAI + GGIP+LV+++ S A + L L LH
Sbjct: 75 ETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEG 134
Query: 684 FCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFRNQR 723
V G + +V L + L
Sbjct: 135 AKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGN 174
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 75.3 bits (183), Expect = 8e-15
Identities = 52/301 (17%), Positives = 100/301 (33%), Gaps = 26/301 (8%)
Query: 425 EIISECPAASPSRSDEVTTTPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIG 484
+ S + + + + L++ L S + AA L L +N +N+M++
Sbjct: 246 NCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVC 305
Query: 485 NCGAIPPLLSLLY--SEAQLTQEHAVTALLNLSINDENKAMIA----EAGAIEPLIHVLK 538
G I L+ + + + E A+ AL +L+ + M + ++ +L
Sbjct: 306 QVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLH 365
Query: 539 SGNGGAKENSAAALFSL-SVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLS 597
+ + L ++ A + GA+ LV LL ++ +
Sbjct: 366 PPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQ 425
Query: 598 IFHENKARIIQAGAVKHLVDLMDPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVE 657
+ I V+ L L+ R+ I IP V+
Sbjct: 426 FVEGVRMEEI------------------VEGCTGALHILARDVHNRIVIRGLNTIPLFVQ 467
Query: 658 VVESGSQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLS 717
++ S + + AA +L +L + + EGA PL L S A +L
Sbjct: 468 LLYSPIENIQRVAAGVLCELA-QDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLF 526
Query: 718 H 718
Sbjct: 527 R 527
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 74.9 bits (182), Expect = 1e-14
Identities = 49/197 (24%), Positives = 82/197 (41%), Gaps = 6/197 (3%)
Query: 510 ALLNLSINDENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRS- 568
A++NL IN ++ A +A AI L +L + +A + LS E + I RS
Sbjct: 1 AVVNL-INYQDDAELAT-RAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSP 58
Query: 569 GAVKALVDLLG-SGTLRGRKDAATALFNLSIFHENKARIIQAGAVKHLVD-LMDPSTGMV 626
V A+V + + + + A L NLS E I ++G + LV L P ++
Sbjct: 59 QMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVL 118
Query: 627 DKAVALLANLSTVGEGRLAIARE-GGIPSLVEVVESGSQRGKENAASILLQLCLHSPKFC 685
A+ L NL EG R GG+ +V ++ + + L L + +
Sbjct: 119 FYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESK 178
Query: 686 TLVLQEGAVPPLVGLSQ 702
++L G LV + +
Sbjct: 179 LIILASGGPQALVNIMR 195
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 61.1 bits (146), Expect = 2e-10
Identities = 66/292 (22%), Positives = 124/292 (42%), Gaps = 8/292 (2%)
Query: 414 SKNEKSSELSGEIISECPAASPSRSDEVTTTPYVKKLIEDLNSTSN-EIQASAAAELRLL 472
+++ + ++ + SR + + V ++ + +T++ E A L L
Sbjct: 28 DEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNL 87
Query: 473 AKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSI-NDENKAMIAEAGAIE 531
+ H E + I G IP L+ +L S +A+T L NL + + K + AG ++
Sbjct: 88 SHHR-EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQ 146
Query: 532 PLIHVLKSGNGGAKENSAAALFSL-SVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAA 590
++ +L N + L L +E K I SG +ALV+++ + T
Sbjct: 147 KMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTT 206
Query: 591 TALF-NLSIFHENKARIIQAGAVKHLVDLMDPSTGMVDKA-VALLANLSTVGEGRLAIAR 648
+ + LS+ NK I++AG ++ L + + + + + L NLS +
Sbjct: 207 SRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ--EGM 264
Query: 649 EGGIPSLVEVVESGSQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGL 700
EG + +LV+++ S AA IL L ++ K +V Q G + LV
Sbjct: 265 EGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRT 316
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.2 bits (123), Expect = 1e-07
Identities = 21/69 (30%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
Query: 447 VKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEH 506
+ ++ L S IQ AA L LA + E I GA PL LL+S + +
Sbjct: 462 IPLFVQLLYSPIENIQRVAAGVLCELA-QDKEAAEAIEAEGATAPLTELLHSRNEGVATY 520
Query: 507 AVTALLNLS 515
A L +S
Sbjct: 521 AAAVLFRMS 529
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.7 bits (88), Expect = 0.002
Identities = 23/140 (16%), Positives = 44/140 (31%), Gaps = 19/140 (13%)
Query: 586 RKDAATALFNLSIFHENKARIIQAGAVKHLVDLMDPSTGMVDKAVALLANLSTVGEGRLA 645
K + NL++ N A + + GA+ LV L+ + + ++ EG
Sbjct: 373 IKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGV-- 430
Query: 646 IAREGGIPSLVEVVESGSQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGT 705
+ E+VE + L + ++ +P V L S
Sbjct: 431 --------RMEEIVE---------GCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPI 473
Query: 706 PRAKEKAQQLLSHFRNQREG 725
+ A +L +E
Sbjct: 474 ENIQRVAAGVLCELAQDKEA 493
|
| >d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 80 | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: U-box domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 73.0 bits (178), Expect = 1e-16
Identities = 28/71 (39%), Positives = 38/71 (53%)
Query: 236 IPPYFRCPLSLELMIDPVIVASGQTYERVFIQKWLDHGLNICPKTRQTLAHTNLIPNYTV 295
IP Y +S ELM +P I SG TY+R I++ L + P TR L LIPN +
Sbjct: 4 IPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAM 63
Query: 296 KAMIENWCEEN 306
K +I+ + EN
Sbjct: 64 KEVIDAFISEN 74
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 70.2 bits (170), Expect = 3e-13
Identities = 45/200 (22%), Positives = 79/200 (39%), Gaps = 6/200 (3%)
Query: 434 SPSRSDEVTTTPYVKKLIEDLNSTSNEIQASAAAELR-LLAKHNMENRMIIGNCGAIPPL 492
+ S++ T V+ +++ +NS + E Q A R LL++ I G IP
Sbjct: 2 ADIGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKF 61
Query: 493 LSLL-YSEAQLTQEHAVTALLNL-SINDENKAMIAEAGAIEPLIHVLKSGNGGAKENSAA 550
+S L ++ Q + AL N+ S E + + GAI I +L S + E +
Sbjct: 62 VSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVW 121
Query: 551 ALFSL-SVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAA--TALFNLSIFHENKARII 607
AL ++ ++ + + GA+ L+ LL L + LS NK
Sbjct: 122 ALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAP 181
Query: 608 QAGAVKHLVDLMDPSTGMVD 627
AV+ ++ + D
Sbjct: 182 PLDAVEQILPTLVRLLHHND 201
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 56.3 bits (134), Expect = 6e-09
Identities = 31/138 (22%), Positives = 58/138 (42%), Gaps = 5/138 (3%)
Query: 568 SGAVKALVDLLGSGTLRGRKDAATALFNLSIFHENKAR--IIQAGAVKHLVDLM--DPST 623
+ +V+ +V + S L + A A L + II+AG + V + +
Sbjct: 12 NWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCS 71
Query: 624 GMVDKAVALLANLSTVG-EGRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCLHSP 682
+ ++ L N+++ E A+ G IP+ + ++ S E A L +
Sbjct: 72 PIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGS 131
Query: 683 KFCTLVLQEGAVPPLVGL 700
F LV++ GA+ PL+ L
Sbjct: 132 AFRDLVIKHGAIDPLLAL 149
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 55.2 bits (131), Expect = 1e-08
Identities = 51/292 (17%), Positives = 104/292 (35%), Gaps = 11/292 (3%)
Query: 439 DEVTTTPYVKKLIEDLNSTSN-EIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLY 497
D + + K + L T IQ +A L +A E + + GAIP +SLL
Sbjct: 50 DNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLA 109
Query: 498 SEAQLTQEHAVTALLNL-SINDENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLS 556
S E AV AL N+ + ++ + GAI+PL+ +L + + +
Sbjct: 110 SPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWT 169
Query: 557 VL------EEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFHENKARIIQAG 610
+ + LV LL D+ A+ L+ + ++
Sbjct: 170 LSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKK 229
Query: 611 AVKHLVDLMDPSTGMVDKA---VALLANLSTVGEGRLAIAREGGIPSLVEVVESGSQRGK 667
V + + +T + A+ ++ E + G + ++ + +
Sbjct: 230 GVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQ 289
Query: 668 ENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHF 719
+ A + + V+ G VP LVG+ + +++A ++++
Sbjct: 290 KEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNY 341
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 46.3 bits (108), Expect = 1e-05
Identities = 44/274 (16%), Positives = 89/274 (32%), Gaps = 17/274 (6%)
Query: 297 AMIENWCEENNLRLPSYSVHSNIVSVLSP-LDHVSAQDLIRTDSFRSLRGSNSTSRSSVD 355
+ N P I+ L L H + L + S R +
Sbjct: 167 TWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMV 226
Query: 356 VGNGFQKLKIDVSSRLTEKSNHRSPEQSYIHSRSESASSAISSVEYMLPASKELSRRCSK 415
V G + + + +P I + V + S +
Sbjct: 227 VKKGVVPQLVKLLG--ATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP 284
Query: 416 NEKSSELSGEIISECPAASPSRSDEVTTTPYVKKLIEDLNSTSNEIQASAAAELRLLAKH 475
+ + +S A + +V V L+ L+ + Q AA +
Sbjct: 285 KTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSG 344
Query: 476 -NMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNL-------SINDENKAMIAEA 527
+E + + +CG I PL++LL ++ + + A+ N+ ++ MI E
Sbjct: 345 GTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEEC 404
Query: 528 GAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEY 561
G ++ + + + EN + SL+++E+Y
Sbjct: 405 GGLDKIEALQRH------ENESVYKASLNLIEKY 432
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 42.5 bits (98), Expect = 2e-04
Identities = 43/309 (13%), Positives = 109/309 (35%), Gaps = 13/309 (4%)
Query: 424 GEIISECPAASPSRSDEVTTTPYVKKLIE-DLNSTSNEIQASAAAELRLLAKHNMENRMI 482
G I + A P + L DL++ + + L L ++ +
Sbjct: 124 GNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPL 183
Query: 483 IGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAMI-AEAGAIEPLIHVLKSGN 541
+P L+ LL+ + A+ L+ + + + G + L+ +L +
Sbjct: 184 DAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATE 243
Query: 542 GGAKENSA-AALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIF- 599
+ A ++ +E K+ +GA+ LL + +K+A + N++
Sbjct: 244 LPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGR 303
Query: 600 HENKARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVG--EGRLAIAREGGIPSLV 656
+ +++ G V LV ++ +A + N ++ G E + + G I L+
Sbjct: 304 QDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLM 363
Query: 657 EVVESGSQRGKENAASILLQLCL------HSPKFCTLVLQEGAVPPLVGLSQSGTPRAKE 710
++ + + + + + + K ++ + G + + L + +
Sbjct: 364 NLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYK 423
Query: 711 KAQQLLSHF 719
+ L+ +
Sbjct: 424 ASLNLIEKY 432
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 66.7 bits (161), Expect = 4e-12
Identities = 56/287 (19%), Positives = 119/287 (41%), Gaps = 6/287 (2%)
Query: 439 DEVTTTPYVKKLIEDLNSTSN-EIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLY 497
D V V +L+E + +Q AA L +A ++ + A+P + LLY
Sbjct: 113 DVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLY 172
Query: 498 SEAQLTQEHAVTALLNLS-INDENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLS 556
+ + +E A+ AL N++ + + + + + A+EP++ + S + L +L
Sbjct: 173 TGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLC 232
Query: 557 VLEEYKAKIGR-SGAVKALVDLLGSGTLRGRKDAATALFNLSIFHENKARIIQAGAVKHL 615
++ + S A+ L L+ S DA A+ LS + + + +
Sbjct: 233 RGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKR 292
Query: 616 VDLM--DPSTGMVDKAVALLANLSTVGEG-RLAIAREGGIPSLVEVVESGSQRGKENAAS 672
+ + ST + A+ + N+ T + + G +P+L ++ S + K+ A
Sbjct: 293 LVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACW 352
Query: 673 ILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHF 719
+ + + + V+ +PPLV L + + K++A +S+
Sbjct: 353 TISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNA 399
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 50.1 bits (118), Expect = 6e-07
Identities = 30/151 (19%), Positives = 57/151 (37%), Gaps = 16/151 (10%)
Query: 446 YVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQE 505
+ L L+S I+ A + + N E + + IPPL+ LL T++
Sbjct: 331 VLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKK 390
Query: 506 HAVTALLNLSINDENKAMI----AEAGAIEPLIHVLKSGNGGAKENSAAALFSL------ 555
A A+ N S + I G I+PL +L+ + E + AL ++
Sbjct: 391 EACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEA 450
Query: 556 ------SVLEEYKAKIGRSGAVKALVDLLGS 580
+ E I ++G ++ + + +
Sbjct: 451 DKEARGLNINENADFIEKAGGMEKIFNCQQN 481
|
| >d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 103 | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: brca1 RING domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.7 bits (144), Expect = 1e-11
Identities = 14/64 (21%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
Query: 240 FRCPLSLELMIDPVIVASGQTYERVFIQKWLDH--GLNICPKTRQTLAHTNLIPNYTVKA 297
CP+ LEL+ +PV + + + K L+ G + CP + + +L +
Sbjct: 22 LECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQ 81
Query: 298 MIEN 301
++E
Sbjct: 82 LVEE 85
|
| >d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]} Length = 98 | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: U-box domain: Ubiquitin conjugation factor E4A species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.6 bits (133), Expect = 3e-10
Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 2/84 (2%)
Query: 225 IERFEATSGVPIPPYFRCPLSLELMIDPVIVASGQ-TYERVFIQKWLDHGLNICPKTRQT 283
+++ E + F P+ LM DPV++ S + T +R I + L P R
Sbjct: 8 LQQQEEETYADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSD-QTDPFNRSP 66
Query: 284 LAHTNLIPNYTVKAMIENWCEENN 307
L + PN +K I+ W E
Sbjct: 67 LTMDQIRPNTELKEKIQRWLAERK 90
|
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 264 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HspBP1 domain domain: Hsp70-binding protein 1 (HspBP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.2 bits (121), Expect = 1e-07
Identities = 42/245 (17%), Positives = 80/245 (32%), Gaps = 7/245 (2%)
Query: 440 EVTTTPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLS-LLYS 498
V + P E + + + A L L NM+N + L+ L +
Sbjct: 12 RVLSQPMPPTAGEAEQAADQQEREGALELLADLC-ENMDNAADFCQLSGMHLLVGRYLEA 70
Query: 499 EAQLTQEHAVTALLNLS-INDENKAMIAEAGAIEPLIHVLKS-GNGGAKENSAAALFSLS 556
A + A + S + + GA+ L+ +L + + A+ L
Sbjct: 71 GAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLV 130
Query: 557 VL-EEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFH-ENKARIIQAGAVKH 614
E + R L+ + + + +A L NL + H E+K + G V+
Sbjct: 131 REQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQ 190
Query: 615 LVDLM-DPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVESGSQRGKENAASI 673
LV L+ + + + L +L T + RE + + +
Sbjct: 191 LVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQE 250
Query: 674 LLQLC 678
L+ C
Sbjct: 251 ELEFC 255
|
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 264 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HspBP1 domain domain: Hsp70-binding protein 1 (HspBP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.5 bits (114), Expect = 1e-06
Identities = 43/251 (17%), Positives = 85/251 (33%), Gaps = 6/251 (2%)
Query: 477 MENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAMIAEAGAIEPLIH- 535
M++ + + + P + Q +E A+ L +L N +N A + + L+
Sbjct: 7 MKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGR 66
Query: 536 VLKSGNGGAKENSAAALFSLS-VLEEYKAKIGRSGAVKALVDLLGSGT-LRGRKDAATAL 593
L++G G + +A + + S + + ++ GA++ L+ LL R A A+
Sbjct: 67 YLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAI 126
Query: 594 FNLSIFHENKA---RIIQAGAVKHLVDLMDPSTGMVDKAVALLANLSTVGEGRLAIAREG 650
L E + +V V A L L E + + G
Sbjct: 127 SCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMG 186
Query: 651 GIPSLVEVVESGSQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKE 710
+ LV +V + E+ L L P+ + + + + E
Sbjct: 187 MVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHE 246
Query: 711 KAQQLLSHFRN 721
+ Q+ L
Sbjct: 247 EYQEELEFCEK 257
|
| >d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Length = 79 | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: CBL species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.2 bits (104), Expect = 2e-06
Identities = 11/50 (22%), Positives = 15/50 (30%)
Query: 242 CPLSLELMIDPVIVASGQTYERVFIQKWLDHGLNICPKTRQTLAHTNLIP 291
C + E D I G + W + CP R + T I
Sbjct: 26 CKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEPIV 75
|
| >d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 86 | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 41.1 bits (96), Expect = 2e-05
Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
Query: 240 FRCPLSLELMIDPVIVASGQTYERVFIQKWLDHGLNICPKTRQTLAHTNLIPNYTVKAMI 299
C + ++ DPV + + R+ I + L + CP R T+L VK+ +
Sbjct: 24 ISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESP--VKSFL 81
|
| >d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 56 | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: U-box domain: Pre-mRNA splicing factor Prp19 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.2 bits (88), Expect = 1e-04
Identities = 9/54 (16%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Query: 242 CPLSLELMIDPVIVA-SGQTYERVFIQKWLDHGLNICPKTRQTLAHTNLIPNYT 294
C +S ++ PV+ S +E+ +++++ P T + L+ ++
Sbjct: 3 CAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDT-GNDPITNEPLSIEEIVEIVP 55
|
| >d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 97 | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: bard1 RING domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.7 bits (84), Expect = 0.001
Identities = 8/68 (11%), Positives = 20/68 (29%), Gaps = 4/68 (5%)
Query: 236 IPPYFRCPLSLELM-IDPVIVASGQTYERVFIQKWLDHGLNICPKTRQTLAHTNLIPNYT 294
+ RC ++ + + + + G +C +L N
Sbjct: 19 LEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIGTGCPVC---YTPAWIQDLKINRQ 75
Query: 295 VKAMIENW 302
+ +MI+
Sbjct: 76 LDSMIQLC 83
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 732 | |||
| d1wa5b_ | 503 | Karyopherin alpha {Baker's yeast (Saccharomyces ce | 99.88 | |
| d1jdha_ | 529 | beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | 99.88 | |
| d1q1sc_ | 434 | Importin alpha {Mouse (Mus musculus) [TaxId: 10090 | 99.87 | |
| d1jdha_ | 529 | beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | 99.87 | |
| d1t1ha_ | 78 | E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi | 99.87 | |
| d2c2la2 | 80 | STIP1 homology and U box-containing protein 1, STU | 99.86 | |
| d1q1sc_ | 434 | Importin alpha {Mouse (Mus musculus) [TaxId: 10090 | 99.86 | |
| d1wa5b_ | 503 | Karyopherin alpha {Baker's yeast (Saccharomyces ce | 99.86 | |
| d1xm9a1 | 457 | Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | 99.84 | |
| d1wgma_ | 98 | Ubiquitin conjugation factor E4A {Human (Homo sapi | 99.82 | |
| d1xqra1 | 264 | Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi | 99.69 | |
| d1xqra1 | 264 | Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi | 99.66 | |
| d1xm9a1 | 457 | Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | 99.65 | |
| d2baya1 | 56 | Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac | 99.48 | |
| d1rmda2 | 86 | V(D)J recombination activating protein 1 (RAG1), d | 99.45 | |
| d1jm7a_ | 103 | brca1 RING domain {Human (Homo sapiens) [TaxId: 96 | 99.42 | |
| d1jm7b_ | 97 | bard1 RING domain {Human (Homo sapiens) [TaxId: 96 | 99.37 | |
| d1fbva4 | 79 | CBL {Human (Homo sapiens) [TaxId: 9606]} | 99.2 | |
| d1bora_ | 56 | Acute promyelocytic leukaemia proto-oncoprotein PM | 99.0 | |
| d1g25a_ | 65 | TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9 | 98.92 | |
| d1chca_ | 68 | Immediate early protein, IEEHV {Equine herpesvirus | 98.8 | |
| d1ur6b_ | 52 | Not-4 N-terminal RING finger domain {Human (Homo s | 98.67 | |
| d1iyma_ | 55 | EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45 | 98.49 | |
| d1b3ua_ | 588 | Constant regulatory domain of protein phosphatase | 98.44 | |
| d1oyza_ | 276 | Hypothetical protein YibA {Escherichia coli [TaxId | 98.41 | |
| d1b3ua_ | 588 | Constant regulatory domain of protein phosphatase | 98.4 | |
| d1v87a_ | 114 | Deltex protein 2 RING-H2 domain {Mouse (Mus muscul | 98.34 | |
| d2vglb_ | 579 | Adaptin beta subunit N-terminal fragment {Human (H | 98.19 | |
| d1ho8a_ | 477 | Regulatory subunit H of the V-type ATPase {Baker's | 98.17 | |
| d1vyxa_ | 60 | IE1B protein (ORF K3), N-terminal domain {Kaposi's | 98.15 | |
| d2vglb_ | 579 | Adaptin beta subunit N-terminal fragment {Human (H | 98.11 | |
| d1oyza_ | 276 | Hypothetical protein YibA {Escherichia coli [TaxId | 98.03 | |
| d3dplr1 | 88 | RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase | 97.95 | |
| d1ibrb_ | 458 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 97.69 | |
| d1qbkb_ | 888 | Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 | 97.68 | |
| d1u6gc_ | 1207 | Cullin-associated NEDD8-dissociated protein 1 (Tip | 97.58 | |
| d2vgla_ | 584 | Adaptin alpha C subunit N-terminal fragment {Mouse | 97.37 | |
| d2vgla_ | 584 | Adaptin alpha C subunit N-terminal fragment {Mouse | 97.36 | |
| d1qbkb_ | 888 | Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 | 97.32 | |
| d2bpta1 | 861 | Importin beta {Baker's yeast (Saccharomyces cerevi | 97.28 | |
| d1te4a_ | 111 | MTH187 {Archaeon Methanobacterium thermoautotrophi | 97.17 | |
| d1u6gc_ | 1207 | Cullin-associated NEDD8-dissociated protein 1 (Tip | 97.04 | |
| d1ho8a_ | 477 | Regulatory subunit H of the V-type ATPase {Baker's | 96.98 | |
| d1wima_ | 94 | UbcM4-interacting protein 4 (KIAA0161) {Human (Hom | 96.91 | |
| d1ibrb_ | 458 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 96.85 | |
| d1qgra_ | 876 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 96.8 | |
| d1te4a_ | 111 | MTH187 {Archaeon Methanobacterium thermoautotrophi | 96.69 | |
| d1qgra_ | 876 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 96.44 | |
| d2bpta1 | 861 | Importin beta {Baker's yeast (Saccharomyces cerevi | 96.43 | |
| d1upka_ | 330 | Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} | 94.75 | |
| d1lrva_ | 233 | Leucine-rich repeat variant {Azotobacter vinelandi | 89.34 | |
| d1lrva_ | 233 | Leucine-rich repeat variant {Azotobacter vinelandi | 86.43 | |
| d2bnxa1 | 343 | Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) { | 84.92 | |
| d2bnxa1 | 343 | Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) { | 80.16 |
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.88 E-value=3.9e-21 Score=214.87 Aligned_cols=282 Identities=21% Similarity=0.225 Sum_probs=251.8
Q ss_pred ccccCchHHHHHHHhcC-CCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcC-
Q 004761 440 EVTTTPYVKKLIEDLNS-TSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSIN- 517 (732)
Q Consensus 440 ~~~~~~~i~~Lv~~L~s-~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~- 517 (732)
.....+.++.|++.|+. .+++.+..|+++|.+++..+......+.+.|+++.|+.+|.+++.++++.|+++|.|++.+
T Consensus 114 ~ii~~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~~~~~~~~~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~ 193 (503)
T d1wa5b_ 114 VVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDS 193 (503)
T ss_dssp HHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHhcCCChhHHHHHHHHHHHHhhhh
Confidence 34557789999999985 4677899999999999998888888899999999999999999999999999999999876
Q ss_pred CchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchh-HHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 004761 518 DENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEY-KAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNL 596 (732)
Q Consensus 518 ~~~k~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~-k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nL 596 (732)
+.++..+.+.|++++|+.++.+.+..++.+++++|.+++..... .......++++.|+.++.+.++.....++++|.+|
T Consensus 194 ~~~r~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~~~~~~~~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l 273 (503)
T d1wa5b_ 194 TDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYL 273 (503)
T ss_dssp HHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccccchhhcccCCHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 56788999999999999999999999999999999999875433 33344568999999999999999999999999999
Q ss_pred ccCch-hHHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCChhh-HHHHHHcCcHHHHHHHHhcCCHHHHHHHHHH
Q 004761 597 SIFHE-NKARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGEG-RLAIAREGGIPSLVEVVESGSQRGKENAASI 673 (732)
Q Consensus 597 s~~~~-n~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~~-r~~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~ 673 (732)
+.... ....+++.|+++.++.++ +++..+...++.+|.+++.+.+. ...+.+.|+++.+..++.+.++..+..++++
T Consensus 274 ~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~nl~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~i~~~~~~~ 353 (503)
T d1wa5b_ 274 SDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWT 353 (503)
T ss_dssp HSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred ccCCchhhhhhhhhhhhhhhhhcccCCchhhhhhHHHHHHHHHHHHHHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHH
Confidence 98665 456788999999999999 78889999999999999886654 4566788999999999999999999999999
Q ss_pred HHHHhcCChHhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHhhc
Q 004761 674 LLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFRN 721 (732)
Q Consensus 674 L~~L~~~~~~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~ 721 (732)
|.+++.+++.....+.+.|+++.++.++.+++.+++..|.++|.++..
T Consensus 354 l~nl~~~~~~~~~~i~~~~~l~~li~~l~~~~~~v~~~a~~~l~nl~~ 401 (503)
T d1wa5b_ 354 ISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASS 401 (503)
T ss_dssp HHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHccccchhHHhcccCChhHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999988864
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=1.1e-21 Score=220.72 Aligned_cols=274 Identities=23% Similarity=0.212 Sum_probs=241.9
Q ss_pred CchHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHh-cCCHHHHHHhhcc-CCHHHHHHHHHHHHHhhcCCchH
Q 004761 444 TPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGN-CGAIPPLLSLLYS-EAQLTQEHAVTALLNLSINDENK 521 (732)
Q Consensus 444 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~-~G~I~~Lv~lL~s-~~~~v~~~A~~~L~nLs~~~~~k 521 (732)
.+.|+.|++.|++.+.+++..|+..+..+++++ ..|..+.. .|+++.|+.+|.+ .+..+++.|+.+|.+|+.+++++
T Consensus 16 ~~aip~L~~lL~~~~~~v~~~A~~~l~~l~~~~-~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~ 94 (529)
T d1jdha_ 16 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKE-ASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGL 94 (529)
T ss_dssp -CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSH-HHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc-HHHHHHHHhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhH
Confidence 566999999999999999999999999999765 55555554 4789999999975 67899999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCc-hhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhccCc
Q 004761 522 AMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLE-EYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFH 600 (732)
Q Consensus 522 ~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~-~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~ 600 (732)
..+.+.|++++|+.+|++++++++.+|+++|.+|+... ..+..+...|+|+.|+.+|+++++..+..++.+|.+++..+
T Consensus 95 ~~i~~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~ 174 (529)
T d1jdha_ 95 LAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGN 174 (529)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHHccChHHHHHHHHHHHHHhhhh
Confidence 99999999999999999999999999999999998755 45667778899999999999999999999999999999754
Q ss_pred -hhHHHHHhhchHHHHHHhc--CCChHHHHHHHHHHHHHhCChhhHHHHHHcCcHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 004761 601 -ENKARIIQAGAVKHLVDLM--DPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVESGSQRGKENAASILLQL 677 (732)
Q Consensus 601 -~n~~~lv~~G~V~~Ll~lL--~~~~~l~e~al~iL~nLa~~~~~r~~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L~~L 677 (732)
+++..++..|+++.|+.++ .....+...++.++.+++..++.+..+.+.|+++.|+.++.++++..+.+|+++|.++
T Consensus 175 ~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~l~~l 254 (529)
T d1jdha_ 175 QESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL 254 (529)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhccccccchhhhhhhhhhHHHHhcccchhhhhhhhhHHHhc
Confidence 5677888999999999999 5667889999999999999999999999999999999999999999999999999998
Q ss_pred hcCChHhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHhhc
Q 004761 678 CLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFRN 721 (732)
Q Consensus 678 ~~~~~~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~ 721 (732)
...... .....|+++.|+.++.++++.++..|..+|.++..
T Consensus 255 s~~~~~---~~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~l~~ 295 (529)
T d1jdha_ 255 SDAATK---QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTC 295 (529)
T ss_dssp HTTCTT---CSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred cccccc---hhhhhhcchhhhhhcccccHHHHHHHHHHHHhhcc
Confidence 764322 12234789999999999999999999999998853
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.87 E-value=1.4e-20 Score=204.97 Aligned_cols=282 Identities=21% Similarity=0.242 Sum_probs=246.2
Q ss_pred cccCchHHHHHHHhcC-CCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCC-
Q 004761 441 VTTTPYVKKLIEDLNS-TSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSIND- 518 (732)
Q Consensus 441 ~~~~~~i~~Lv~~L~s-~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~- 518 (732)
....|.++.|++.|++ ++++++..|+++|.+++..+++.+..+.+.|+++.|+.+|.+++..+++.|+++|.|++.+.
T Consensus 52 i~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~ 131 (434)
T d1q1sc_ 52 IIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGS 131 (434)
T ss_dssp HHHTTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCChhhhhHhhhccchhhhhhccccCCHHHHHHHHHHHHHHhccch
Confidence 4456789999999975 45788999999999999998889999999999999999999999999999999999999875
Q ss_pred chHHHHHHcCCHHHHHHHHcCCC-----HHHHHHHHHHHHHhccCchh-HHHHHhcchHHHHHHhhcCCCHHHHHHHHHH
Q 004761 519 ENKAMIAEAGAIEPLIHVLKSGN-----GGAKENSAAALFSLSVLEEY-KAKIGRSGAVKALVDLLGSGTLRGRKDAATA 592 (732)
Q Consensus 519 ~~k~~i~~~g~l~~Lv~lL~~~~-----~e~~~~Aa~~L~~Ls~~~~~-k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~a 592 (732)
..+..+.+.|+++.++.++...+ ......+++++.+++..... .......++++.|+.++.++++..+..|+.+
T Consensus 132 ~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~a~~~ 211 (434)
T d1q1sc_ 132 AFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWA 211 (434)
T ss_dssp HHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHTCCCTTCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhHHHHHHHhcccccchHHHHHHHHHHHHHHhhcccccchhhhhhhHHHHHHHHHhccccchhhhHHhh
Confidence 45778889999999999998764 24556788889998875543 3333455789999999999999999999999
Q ss_pred HHHhccCch-hHHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCCh-hhHHHHHHcCcHHHHHHHHhcCCHHHHHH
Q 004761 593 LFNLSIFHE-NKARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVG-EGRLAIAREGGIPSLVEVVESGSQRGKEN 669 (732)
Q Consensus 593 L~nLs~~~~-n~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~-~~r~~i~~~~~I~~Lv~lL~~~s~~~~e~ 669 (732)
|.+|+..+. ....+...|+++.|++++ +++..++..++.+|.+++... +.+..+.+.|+++.++.++.+.++..++.
T Consensus 212 l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~ 291 (434)
T d1q1sc_ 212 ISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKE 291 (434)
T ss_dssp HHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHH
T ss_pred hcccchhhhhhHHHHhhcccchhcccccccchhhhhhchhhhhhhHHhhhhHHHHHHHhccccchHHHhhcccchhhhHH
Confidence 999998765 445667899999999999 788999999999999998755 46678889999999999999999999999
Q ss_pred HHHHHHHHhcCChHhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHhhcc
Q 004761 670 AASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFRNQ 722 (732)
Q Consensus 670 A~~~L~~L~~~~~~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~~ 722 (732)
|+++|.+++..+......+.+.|+++.++.++.++++.++..|.++|.++...
T Consensus 292 a~~~L~~l~~~~~~~~~~i~~~~~i~~li~~l~~~~~~v~~~a~~~l~nl~~~ 344 (434)
T d1q1sc_ 292 ATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSG 344 (434)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhccccchhHHHHhhhhhHHHHHHHHhccChHHHHHHHHHHHHHHhc
Confidence 99999999998888889999999999999999999999999999999888543
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.87 E-value=7.4e-21 Score=213.80 Aligned_cols=276 Identities=26% Similarity=0.271 Sum_probs=242.7
Q ss_pred CchHHHHHHHhcC-CCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCc-hH
Q 004761 444 TPYVKKLIEDLNS-TSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDE-NK 521 (732)
Q Consensus 444 ~~~i~~Lv~~L~s-~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~-~k 521 (732)
.+.++.+++.|.. .+++.+..|+..|..++. +++++..+.+.|+++.|+.+|+++++.++..|+++|.|++.+.+ .+
T Consensus 58 ~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~-~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~ 136 (529)
T d1jdha_ 58 PQMVSAIVRTMQNTNDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK 136 (529)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHH
T ss_pred hhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-CchhHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhh
Confidence 4568999999964 578899999999999985 56889999999999999999999999999999999999988754 57
Q ss_pred HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCc-hhHHHHHhcchHHHHHHhhcCC-CHHHHHHHHHHHHHhccC
Q 004761 522 AMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLE-EYKAKIGRSGAVKALVDLLGSG-TLRGRKDAATALFNLSIF 599 (732)
Q Consensus 522 ~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~-~~k~~i~~~g~i~~Lv~lL~~~-~~~~~~~Al~aL~nLs~~ 599 (732)
..+.+.|++++|+.+|++++.+++..++.+|.+++..+ +++..+...|+++.|+.+++.. ....+..++.++.+++.+
T Consensus 137 ~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~ 216 (529)
T d1jdha_ 137 MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC 216 (529)
T ss_dssp HHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS
T ss_pred hHHHhcCCchHHHHHHHccChHHHHHHHHHHHHHhhhhhHHHHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhcc
Confidence 77889999999999999999999999999999998754 5567777889999999999764 477888999999999999
Q ss_pred chhHHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCChhhHHHHHHcCcHHHHHHHHhcCCHHHHHHHHHHHHHHh
Q 004761 600 HENKARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLC 678 (732)
Q Consensus 600 ~~n~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~~r~~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~ 678 (732)
++++..+++.|+++.|+.++ +.+..+...++++|.+++...... ....|+++.|++++.++++..++.|+.+|.+++
T Consensus 217 ~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~l~~ls~~~~~~--~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~l~ 294 (529)
T d1jdha_ 217 SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLT 294 (529)
T ss_dssp TTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTC--SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred ccccchhhhhhhhhhHHHHhcccchhhhhhhhhHHHhccccccch--hhhhhcchhhhhhcccccHHHHHHHHHHHHhhc
Confidence 99999999999999999999 788899999999999997654332 122467999999999999999999999999999
Q ss_pred cCChHhHHHHHhCCCHHHHHHchh--cCChHHHHHHHHHHHHhhcc
Q 004761 679 LHSPKFCTLVLQEGAVPPLVGLSQ--SGTPRAKEKAQQLLSHFRNQ 722 (732)
Q Consensus 679 ~~~~~~~~~v~~~G~i~~L~~Ll~--~g~~~~k~kA~~lL~~l~~~ 722 (732)
.+++..+..+.+.|+++.|+.++. ++.+..++.|..+|+++...
T Consensus 295 ~~~~~~~~~i~~~~~i~~Li~~l~~~~~~~~~~~~a~~aL~~l~~~ 340 (529)
T d1jdha_ 295 CNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSR 340 (529)
T ss_dssp TTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSS
T ss_pred cchhHHHHHHHHhhhHHHHHHHHHhhhcchhHHHHHHHHhhcccch
Confidence 989999999999999999999885 34578889999999988643
|
| >d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: U-box domain: E3 ubiquitin ligase PUB14 species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.87 E-value=4.2e-23 Score=170.89 Aligned_cols=75 Identities=60% Similarity=1.146 Sum_probs=72.0
Q ss_pred CCCCCccccccCcccCCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHcCC
Q 004761 234 VPIPPYFRCPLSLELMIDPVIVASGQTYERVFIQKWLDHGLNICPKTRQTLAHTNLIPNYTVKAMIENWCEENNL 308 (732)
Q Consensus 234 ~~~p~~f~Cpi~~~lm~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn~~l~~~i~~~~~~~~~ 308 (732)
.++|++|.||||+++|+|||+++|||||||.||++|+..++.+||.|+.++...+++||+.||++|++|+++||+
T Consensus 3 peiP~~l~CpIc~~~m~dPV~~~cgh~fc~~ci~~~~~~~~~~cP~~~~~l~~~~l~pN~~L~~~I~~~~~~~~~ 77 (78)
T d1t1ha_ 3 PEFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIALWCESNGI 77 (78)
T ss_dssp CCCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECTTTHHHHHHHHHHSCC
T ss_pred CCCCccCCCcCcCchhhCceEccCCCcchHHHHHHHHHHCCCCCCcccccCCcccccchHHHHHHHHHHHHHhCc
Confidence 369999999999999999999999999999999999998778899999999999999999999999999999997
|
| >d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: U-box domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.86 E-value=4.5e-23 Score=171.54 Aligned_cols=74 Identities=38% Similarity=0.592 Sum_probs=71.3
Q ss_pred CCCCccccccCcccCCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHcCC
Q 004761 235 PIPPYFRCPLSLELMIDPVIVASGQTYERVFIQKWLDHGLNICPKTRQTLAHTNLIPNYTVKAMIENWCEENNL 308 (732)
Q Consensus 235 ~~p~~f~Cpi~~~lm~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn~~l~~~i~~~~~~~~~ 308 (732)
++|++|.||||+++|+|||+++|||||||.||++|+..++.+||.|+++++..++.||+.|+++|++|+++||+
T Consensus 3 eiP~~l~CpIc~~l~~dPv~~~cGhtfc~~ci~~~l~~~~~~cP~c~~~l~~~~l~pN~~L~~~I~~~l~~~~~ 76 (80)
T d2c2la2 3 DIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAFISENGW 76 (80)
T ss_dssp CCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECHHHHHHHHHHHTTCSC
T ss_pred CCCccccCcCcCchhhhhcccCCcCeecHHHHHHHHhcCCccCCCccccccccccccHHHHHHHHHHHHHHCCC
Confidence 58999999999999999999999999999999999998878999999999999999999999999999999985
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.86 E-value=7.7e-20 Score=199.01 Aligned_cols=280 Identities=18% Similarity=0.190 Sum_probs=241.7
Q ss_pred cCchHHHHHHHhcCCCHHHHHHHHHHHHHHhccChh-hHHHHHhcCCHHHHHHhhcc-CCHHHHHHHHHHHHHhhcC-Cc
Q 004761 443 TTPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNME-NRMIIGNCGAIPPLLSLLYS-EAQLTQEHAVTALLNLSIN-DE 519 (732)
Q Consensus 443 ~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~-~r~~i~~~G~I~~Lv~lL~s-~~~~v~~~A~~~L~nLs~~-~~ 519 (732)
..+.|+.+|+.|.+++++.+..|+..++.+.+.... ....+.+.|++|.|+++|.+ +++.++..|+++|.|++.. ++
T Consensus 11 ~~~~i~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~~ 90 (434)
T d1q1sc_ 11 VNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSE 90 (434)
T ss_dssp SSCCHHHHHHHHTSSCHHHHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSCHH
T ss_pred hhhhHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCChh
Confidence 366799999999999999999999999988654332 25678889999999999964 5688999999999999876 45
Q ss_pred hHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCc-hhHHHHHhcchHHHHHHhhcCCC-----HHHHHHHHHHH
Q 004761 520 NKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLE-EYKAKIGRSGAVKALVDLLGSGT-----LRGRKDAATAL 593 (732)
Q Consensus 520 ~k~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~-~~k~~i~~~g~i~~Lv~lL~~~~-----~~~~~~Al~aL 593 (732)
.+..+.+.|+++.|+.+|.+++.++++.|+++|.+++... ..+..+...|+++.|+.++...+ ......++.++
T Consensus 91 ~~~~i~~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l 170 (434)
T d1q1sc_ 91 QTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTL 170 (434)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHH
T ss_pred hhhHhhhccchhhhhhccccCCHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHHhcccccchHHHHHHHHHHH
Confidence 6888889999999999999999999999999999998754 56777888899999999998653 35567788889
Q ss_pred HHhccCchhH-HHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCChhh-HHHHHHcCcHHHHHHHHhcCCHHHHHHH
Q 004761 594 FNLSIFHENK-ARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGEG-RLAIAREGGIPSLVEVVESGSQRGKENA 670 (732)
Q Consensus 594 ~nLs~~~~n~-~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~~-r~~i~~~~~I~~Lv~lL~~~s~~~~e~A 670 (732)
.+++...... ......++++.|+.++ +.+..+...++.+|.+|+.++.. ...+...|+++.+++++.++++..+..|
T Consensus 171 ~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~a 250 (434)
T d1q1sc_ 171 SNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPA 250 (434)
T ss_dssp HHHTCCCTTCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHH
T ss_pred HHHhhcccccchhhhhhhHHHHHHHHHhccccchhhhHHhhhcccchhhhhhHHHHhhcccchhcccccccchhhhhhch
Confidence 9998875433 3445678999999999 77889999999999999987654 4556678899999999999999999999
Q ss_pred HHHHHHHhcCChHhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHhhcc
Q 004761 671 ASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFRNQ 722 (732)
Q Consensus 671 ~~~L~~L~~~~~~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~~ 722 (732)
+.+|.+++.++++....+++.|+++.|+.++.+.++.+++.|..+|.++...
T Consensus 251 l~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~ 302 (434)
T d1q1sc_ 251 LRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAG 302 (434)
T ss_dssp HHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHTTS
T ss_pred hhhhhhHHhhhhHHHHHHHhccccchHHHhhcccchhhhHHHHHHHhhhccc
Confidence 9999999998888889999999999999999999999999999999988653
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.86 E-value=1.5e-19 Score=201.76 Aligned_cols=278 Identities=21% Similarity=0.210 Sum_probs=245.0
Q ss_pred ccCchHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCch-
Q 004761 442 TTTPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDEN- 520 (732)
Q Consensus 442 ~~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~- 520 (732)
...+.++.++..|.+++.+++..|+++|.+++..++++|..+.+.|+++.|+.++.+.+..++..++++|.|++.....
T Consensus 159 ~~~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~~~~~ 238 (503)
T d1wa5b_ 159 VDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQ 238 (503)
T ss_dssp HHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSC
T ss_pred HhCCChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHHHHHHHhhcccccchhhcccCCHHHHHHHHHHHHHHhcCCccc
Confidence 3467789999999999999999999999999999999999999999999999999999999999999999999976433
Q ss_pred HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCch-hHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhccC
Q 004761 521 KAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEE-YKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIF 599 (732)
Q Consensus 521 k~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~-~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~ 599 (732)
.......++++.|+.++.+.+.+.+..++++|.+++.... ....+...|+++.++.++.+++..+...|+.+|.|++..
T Consensus 239 ~~~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~nl~~~ 318 (503)
T d1wa5b_ 239 PDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTG 318 (503)
T ss_dssp CCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTS
T ss_pred hHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhccCCchhhhhhhhhhhhhhhhhcccCCchhhhhhHHHHHHHHHHH
Confidence 3344467889999999999999999999999999987554 456677889999999999999999999999999999987
Q ss_pred chh-HHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCC-hhhHHHHHHcCcHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004761 600 HEN-KARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTV-GEGRLAIAREGGIPSLVEVVESGSQRGKENAASILLQ 676 (732)
Q Consensus 600 ~~n-~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~-~~~r~~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L~~ 676 (732)
.+. ...+++.|+++.|..++ +++..++..++++|.|++.+ +.....+.+.|+++.++.++.+++..++..|+++|.+
T Consensus 319 ~~~~~~~~~~~~~l~~l~~ll~~~~~~i~~~~~~~l~nl~~~~~~~~~~i~~~~~l~~li~~l~~~~~~v~~~a~~~l~n 398 (503)
T d1wa5b_ 319 NDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISN 398 (503)
T ss_dssp CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhhccHHHHHHHHHccccchhHHhcccCChhHHHHHHHHHHH
Confidence 654 44677899999999999 77889999999999999774 4567788899999999999999999999999999999
Q ss_pred HhcC---ChHhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHh
Q 004761 677 LCLH---SPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHF 719 (732)
Q Consensus 677 L~~~---~~~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l 719 (732)
++.+ .++....+++.|+++.|+.++..+++++...+..+|..+
T Consensus 399 l~~~~~~~~~~~~~l~~~~~l~~l~~~L~~~d~~~~~~~L~~l~~l 444 (503)
T d1wa5b_ 399 ASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENI 444 (503)
T ss_dssp HHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred HHhcccccHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 9864 345677888999999999999999988888887766655
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.84 E-value=1.3e-19 Score=195.15 Aligned_cols=278 Identities=21% Similarity=0.269 Sum_probs=227.0
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcC-CchHHHH
Q 004761 446 YVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSIN-DENKAMI 524 (732)
Q Consensus 446 ~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~-~~~k~~i 524 (732)
.||.||++|++++++++..|++.|.+++.+++++|..+.+.|+||.|+++|++++++++..|+++|.||+.+ ++++..+
T Consensus 3 ~ip~lv~~L~~~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~i 82 (457)
T d1xm9a1 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLET 82 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred CHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 489999999999999999999999999999899999999999999999999999999999999999999965 6688999
Q ss_pred HHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHhccCch-------------------------------------------
Q 004761 525 AEAGAIEPLIHVLKS-GNGGAKENSAAALFSLSVLEE------------------------------------------- 560 (732)
Q Consensus 525 ~~~g~l~~Lv~lL~~-~~~e~~~~Aa~~L~~Ls~~~~------------------------------------------- 560 (732)
.+.|+++.|+.++.+ .+.+++..|+++|.+++..+.
T Consensus 83 ~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 162 (457)
T d1xm9a1 83 RRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFN 162 (457)
T ss_dssp HHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHHHH
T ss_pred HHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhhHHHHHhcccHHHHHHHHhhhhhhhcchhhhhcccccHHHHHH
Confidence 999999999998865 457788888888877754321
Q ss_pred -------------hHHHHHh-cchHHHHHHhhcC----------------------------------------------
Q 004761 561 -------------YKAKIGR-SGAVKALVDLLGS---------------------------------------------- 580 (732)
Q Consensus 561 -------------~k~~i~~-~g~i~~Lv~lL~~---------------------------------------------- 580 (732)
++..+.. .|+++.|+.++.+
T Consensus 163 a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (457)
T d1xm9a1 163 ATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYT 242 (457)
T ss_dssp HHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC-----
T ss_pred HHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhhh
Confidence 1111111 3666776665431
Q ss_pred -----------------------------------------------------CCHHHHHHHHHHHHHhccCch------
Q 004761 581 -----------------------------------------------------GTLRGRKDAATALFNLSIFHE------ 601 (732)
Q Consensus 581 -----------------------------------------------------~~~~~~~~Al~aL~nLs~~~~------ 601 (732)
.++..+..+..++.+++....
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 322 (457)
T d1xm9a1 243 EKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGM 322 (457)
T ss_dssp -----------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHH
T ss_pred HHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHhhccccchHHH
Confidence 012223456667777765432
Q ss_pred hHHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCChhhHHHHHHcCcHHHHHHHHhc------CCHHHHHHHHHHH
Q 004761 602 NKARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVES------GSQRGKENAASIL 674 (732)
Q Consensus 602 n~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~~r~~i~~~~~I~~Lv~lL~~------~s~~~~e~A~~~L 674 (732)
.+..+.+.|+++.|++++ +.+..+...++.+|.+|+.+++.+..+.+ ++++.++.++.. .+++.++.|+.+|
T Consensus 323 ~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~~~~~~~i~~-~~i~~li~~L~~~~~~~~~~~~v~~~a~~~L 401 (457)
T d1xm9a1 323 SQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGN-QVFPEVTRLLTSHTGNTSNSEDILSSACYTV 401 (457)
T ss_dssp HHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHH-HTHHHHHHTTTSCCSCSTTHHHHHHHHHHHH
T ss_pred HHHHHHHcCChHHHHhhhcCccHHHHHHHHHHHHHHhhChhHHHHHHH-hhHHHHHHHHhccccCcCCcHHHHHHHHHHH
Confidence 234556789999999999 88899999999999999999998887765 689999998854 2467899999999
Q ss_pred HHHhcCChHhHHHHHhCCCHHHHHHchhcC-ChHHHHHHHHHHHHhhcccc
Q 004761 675 LQLCLHSPKFCTLVLQEGAVPPLVGLSQSG-TPRAKEKAQQLLSHFRNQRE 724 (732)
Q Consensus 675 ~~L~~~~~~~~~~v~~~G~i~~L~~Ll~~g-~~~~k~kA~~lL~~l~~~~~ 724 (732)
.+++..+++.+..+++.|+++.|+.++.+. ++++++.|..+|.+|..+++
T Consensus 402 ~~l~~~~~~~~~~l~~~g~i~~L~~l~~~~~~~~~~~aA~~~L~~L~~~~~ 452 (457)
T d1xm9a1 402 RNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKE 452 (457)
T ss_dssp HHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTT
T ss_pred HHHhcCCHHHHHHHHHCCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHcCHh
Confidence 999998999999999999999999999875 57899999999999965554
|
| >d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: U-box domain: Ubiquitin conjugation factor E4A species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.82 E-value=3e-21 Score=166.16 Aligned_cols=73 Identities=29% Similarity=0.405 Sum_probs=68.3
Q ss_pred CCCCCccccccCcccCCCceecCCC-cccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHcC
Q 004761 234 VPIPPYFRCPLSLELMIDPVIVASG-QTYERVFIQKWLDHGLNICPKTRQTLAHTNLIPNYTVKAMIENWCEENN 307 (732)
Q Consensus 234 ~~~p~~f~Cpi~~~lm~dPV~~~~g-~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn~~l~~~i~~~~~~~~ 307 (732)
.++|++|.||||+++|+|||+++|| |||||.||.+||..+ .+||.|++++...+|+||++||+.|+.|+.++.
T Consensus 17 ~~~P~~f~CPI~~~lm~dPV~~~~~~~ty~r~~I~~~l~~~-~~~P~~~~~l~~~~L~pN~~Lr~~I~~~~~~~~ 90 (98)
T d1wgma_ 17 ADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSD-QTDPFNRSPLTMDQIRPNTELKEKIQRWLAERK 90 (98)
T ss_dssp CSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTTS-CBCTTTCSBCCTTTSEECHHHHHHHHHHHHHST
T ss_pred cCCcHHhCCcCchhHHHHHHhcccccchhhHHHHHHHHHhc-CCcccccccccchhhcchHHHHHHHHHHHHHHH
Confidence 4699999999999999999999876 599999999999865 689999999999999999999999999999986
|
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HspBP1 domain domain: Hsp70-binding protein 1 (HspBP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.69 E-value=7.3e-16 Score=157.33 Aligned_cols=194 Identities=20% Similarity=0.179 Sum_probs=172.6
Q ss_pred cCCHHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHH-HHcCCCHHHHHHHHHHHHHhccC-chhHHHHHhcchHHHHH
Q 004761 498 SEAQLTQEHAVTALLNLSINDENKAMIAEAGAIEPLIH-VLKSGNGGAKENSAAALFSLSVL-EEYKAKIGRSGAVKALV 575 (732)
Q Consensus 498 s~~~~v~~~A~~~L~nLs~~~~~k~~i~~~g~l~~Lv~-lL~~~~~e~~~~Aa~~L~~Ls~~-~~~k~~i~~~g~i~~Lv 575 (732)
+.+.+.+..|+.+|.+|+.+.+++..+...|++++++. ++++++++++..|+.+|.+++.+ +..+..+...|++|.|+
T Consensus 28 ~~~~~~~~~Al~~L~~L~~~~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv 107 (264)
T d1xqra1 28 AADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLL 107 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCHHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHH
Confidence 45677889999999999988889999999999999985 78888999999999999999985 45677888889999999
Q ss_pred HhhcC-CCHHHHHHHHHHHHHhccCc-hhHHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhC-ChhhHHHHHHcCc
Q 004761 576 DLLGS-GTLRGRKDAATALFNLSIFH-ENKARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLST-VGEGRLAIAREGG 651 (732)
Q Consensus 576 ~lL~~-~~~~~~~~Al~aL~nLs~~~-~n~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~-~~~~r~~i~~~~~ 651 (732)
.+|.+ .++.++..|+.+|.+++.+. .++..++..|+++.|+.++ +.+..++..++.+|.+++. .++.+..+.+.|+
T Consensus 108 ~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~ 187 (264)
T d1xqra1 108 RLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGM 187 (264)
T ss_dssp HHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTH
T ss_pred HHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHHHHHHHhhh
Confidence 99964 57889999999999999765 5677889999999999999 8889999999999999975 5678889999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHhHHHHHhC
Q 004761 652 IPSLVEVVESGSQRGKENAASILLQLCLHSPKFCTLVLQE 691 (732)
Q Consensus 652 I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~v~~~ 691 (732)
++.|+.++.++++..++.|+++|.+|+..++.....+...
T Consensus 188 v~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~~ 227 (264)
T d1xqra1 188 VQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREP 227 (264)
T ss_dssp HHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCG
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence 9999999999999999999999999999888877776643
|
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HspBP1 domain domain: Hsp70-binding protein 1 (HspBP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.66 E-value=2.5e-15 Score=153.30 Aligned_cols=181 Identities=21% Similarity=0.220 Sum_probs=165.0
Q ss_pred CHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHH-hhcCCCHHHHHHHHHHHHHhccCc-hhHHHHHhhchHHHHHHh
Q 004761 541 NGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVD-LLGSGTLRGRKDAATALFNLSIFH-ENKARIIQAGAVKHLVDL 618 (732)
Q Consensus 541 ~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~-lL~~~~~~~~~~Al~aL~nLs~~~-~n~~~lv~~G~V~~Ll~l 618 (732)
+.+.+..|+.+|.+|+...+++..+...|++++++. ++.++++.++..|+.+|.+++.++ ..+..+++.|+++.|+.+
T Consensus 30 ~~~~~~~Al~~L~~L~~~~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~l 109 (264)
T d1xqra1 30 DQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL 109 (264)
T ss_dssp HHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCHHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHH
Confidence 467888999999999998899999999999999986 678889999999999999999865 567788999999999999
Q ss_pred c--CCChHHHHHHHHHHHHHhCC-hhhHHHHHHcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHhHHHHHhCCCHH
Q 004761 619 M--DPSTGMVDKAVALLANLSTV-GEGRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCLHSPKFCTLVLQEGAVP 695 (732)
Q Consensus 619 L--~~~~~l~e~al~iL~nLa~~-~~~r~~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~v~~~G~i~ 695 (732)
+ +.+..+...++++|.+++.+ +.++..+...||++.|++++.++++..+.+++++|.+++..++.....+.+.|+++
T Consensus 110 L~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~v~ 189 (264)
T d1xqra1 110 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQ 189 (264)
T ss_dssp HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHH
T ss_pred hhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHHHHHHHhhhHH
Confidence 9 56788999999999999865 45778889999999999999999999999999999999998899999999999999
Q ss_pred HHHHchhcCChHHHHHHHHHHHHhhc
Q 004761 696 PLVGLSQSGTPRAKEKAQQLLSHFRN 721 (732)
Q Consensus 696 ~L~~Ll~~g~~~~k~kA~~lL~~l~~ 721 (732)
.|+.++.++++.+++.|..+|..|..
T Consensus 190 ~L~~lL~~~~~~~~~~a~~aL~~L~~ 215 (264)
T d1xqra1 190 QLVALVRTEHSPFHEHVLGALCSLVT 215 (264)
T ss_dssp HHHHHHTSCCSTHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999999988854
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.65 E-value=1.1e-14 Score=155.79 Aligned_cols=237 Identities=24% Similarity=0.256 Sum_probs=189.6
Q ss_pred CCHHHHHHhhccCCHHHHHHHHHHHHHhhcC-CchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhcc-CchhHHH
Q 004761 487 GAIPPLLSLLYSEAQLTQEHAVTALLNLSIN-DENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSV-LEEYKAK 564 (732)
Q Consensus 487 G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~-~~~k~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~-~~~~k~~ 564 (732)
+.||.|+++|++++++++..|+++|.|||.+ +++|..+.+.|++++|+.+|++++++++..|+++|.+|+. +++++..
T Consensus 2 ~~ip~lv~~L~~~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~ 81 (457)
T d1xm9a1 2 LTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLE 81 (457)
T ss_dssp CCHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred CCHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 4799999999999999999999999999975 7789999999999999999999999999999999999985 5678899
Q ss_pred HHhcchHHHHHHhhcC-CCHHHHHHHHHHHHHhccCchhHHHHHhhchHHHHHHhc----------------CCChHHHH
Q 004761 565 IGRSGAVKALVDLLGS-GTLRGRKDAATALFNLSIFHENKARIIQAGAVKHLVDLM----------------DPSTGMVD 627 (732)
Q Consensus 565 i~~~g~i~~Lv~lL~~-~~~~~~~~Al~aL~nLs~~~~n~~~lv~~G~V~~Ll~lL----------------~~~~~l~e 627 (732)
+...|+++.|+.++.. .++..+..|+.+|.+|+.....+......|+.+.+..++ ..+..+..
T Consensus 82 i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 161 (457)
T d1xm9a1 82 TRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFF 161 (457)
T ss_dssp HHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHHH
T ss_pred HHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhhHHHHHhcccHHHHHHHHhhhhhhhcchhhhhcccccHHHHH
Confidence 9999999999999875 578899999999999999888887777766555444432 12456778
Q ss_pred HHHHHHHHHhCChhhHHHHHHc-CcHHHHHHHHhc---------------------------------------------
Q 004761 628 KAVALLANLSTVGEGRLAIARE-GGIPSLVEVVES--------------------------------------------- 661 (732)
Q Consensus 628 ~al~iL~nLa~~~~~r~~i~~~-~~I~~Lv~lL~~--------------------------------------------- 661 (732)
.++.+|.+++...+.+..+... |+++.++.++.+
T Consensus 162 ~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (457)
T d1xm9a1 162 NATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAY 241 (457)
T ss_dssp HHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----
T ss_pred HHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhh
Confidence 8888888888877766555443 345555554421
Q ss_pred ------------------------------------------------------CCHHHHHHHHHHHHHHhcCChH----
Q 004761 662 ------------------------------------------------------GSQRGKENAASILLQLCLHSPK---- 683 (732)
Q Consensus 662 ------------------------------------------------------~s~~~~e~A~~~L~~L~~~~~~---- 683 (732)
.++..++.+++++.+++.....
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 321 (457)
T d1xm9a1 242 TEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSG 321 (457)
T ss_dssp ------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHH
T ss_pred hHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHhhccccchHH
Confidence 1234467778888888764322
Q ss_pred -hHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHhhccc
Q 004761 684 -FCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFRNQR 723 (732)
Q Consensus 684 -~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~~~ 723 (732)
....+.+.|+++.|+.+++++++.++..|..+|.+|....
T Consensus 322 ~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~~ 362 (457)
T d1xm9a1 322 MSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHP 362 (457)
T ss_dssp HHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSG
T ss_pred HHHHHHHHcCChHHHHhhhcCccHHHHHHHHHHHHHHhhCh
Confidence 2334456899999999999999999999999999987543
|
| >d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: U-box domain: Pre-mRNA splicing factor Prp19 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.48 E-value=3.1e-15 Score=114.30 Aligned_cols=52 Identities=17% Similarity=0.370 Sum_probs=47.6
Q ss_pred cccccCcccCCCceec-CCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCccc
Q 004761 240 FRCPLSLELMIDPVIV-ASGQTYERVFIQKWLDHGLNICPKTRQTLAHTNLIPN 292 (732)
Q Consensus 240 f~Cpi~~~lm~dPV~~-~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn 292 (732)
+.||||+++|+|||++ .|||+|||.||.+|+... .+||.||++++.++|+|.
T Consensus 1 l~C~Ic~~~~~~Pv~~~~cGh~fc~~cI~~~l~~~-~~CP~c~~~l~~~dLipi 53 (56)
T d2baya1 1 MLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDT-GNDPITNEPLSIEEIVEI 53 (56)
T ss_dssp CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHH-SBCTTTCCBCCGGGCEEC
T ss_pred CCCccCCchHHhcCccCCCCCcccHHHHHHHHhhc-cCCCccCCcCCHHhceeC
Confidence 4799999999999988 599999999999999875 689999999999998875
|
| >d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.45 E-value=2e-14 Score=119.13 Aligned_cols=61 Identities=21% Similarity=0.368 Sum_probs=53.5
Q ss_pred ccccccCcccCCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCc-ccHHHHHHH
Q 004761 239 YFRCPLSLELMIDPVIVASGQTYERVFIQKWLDHGLNICPKTRQTLAHTNLI-PNYTVKAMI 299 (732)
Q Consensus 239 ~f~Cpi~~~lm~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~-pn~~l~~~i 299 (732)
+|.||||+++|.|||+++|||+||+.||++|++.++.+||.||.++...++. |..++.+.+
T Consensus 23 ~l~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~p~~~~~l~~P~~~~l~~l 84 (86)
T d1rmda2 23 SISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNIL 84 (86)
T ss_dssp HTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHHHH
T ss_pred CcCCccCCcchhcceecCCCChhhHHHHHHHHhhCCCcCcccCCCCChhhccCHHHHHHHHh
Confidence 4589999999999999999999999999999987778899999999877765 666666554
|
| >d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: brca1 RING domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.42 E-value=3.3e-14 Score=123.22 Aligned_cols=67 Identities=19% Similarity=0.460 Sum_probs=59.5
Q ss_pred CccccccCcccCCCceecCCCcccchHHHHHHHhcC--CCCCCCCCCCCCCCCCcccHHHHHHHHHHHH
Q 004761 238 PYFRCPLSLELMIDPVIVASGQTYERVFIQKWLDHG--LNICPKTRQTLAHTNLIPNYTVKAMIENWCE 304 (732)
Q Consensus 238 ~~f~Cpi~~~lm~dPV~~~~g~ty~r~~I~~~~~~~--~~~cP~~~~~l~~~~l~pn~~l~~~i~~~~~ 304 (732)
+.|.||||+++|.|||+++|||+||+.||.+|+... ...||.|++++...++.||..++++|+.+.+
T Consensus 20 ~~l~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~~ve~l~~ 88 (103)
T d1jm7a_ 20 KILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQLVEELLK 88 (103)
T ss_dssp HHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCCSSSHHHHHHHH
T ss_pred cCcCCCccCchhCCeEEcCCCCchhhHHHHHHHHHCCCCCcCcCCCCcCChhhCCcCHHHHHHHHHHHH
Confidence 357799999999999999999999999999999753 3579999999999999999988888887754
|
| >d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: bard1 RING domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.37 E-value=5.4e-14 Score=120.48 Aligned_cols=67 Identities=15% Similarity=0.280 Sum_probs=60.0
Q ss_pred CCCccccccCcccCCCceec-CCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHH
Q 004761 236 IPPYFRCPLSLELMIDPVIV-ASGQTYERVFIQKWLDHGLNICPKTRQTLAHTNLIPNYTVKAMIENWCEE 305 (732)
Q Consensus 236 ~p~~f~Cpi~~~lm~dPV~~-~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn~~l~~~i~~~~~~ 305 (732)
+++.|.||||+++|.|||++ +|||+||+.||.+|+. ..||.|+.++...++.||..|+.+|+.+...
T Consensus 19 l~~~l~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~---~~CP~Cr~~~~~~~l~~n~~l~~lv~~~~~~ 86 (97)
T d1jm7b_ 19 LEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG---TGCPVCYTPAWIQDLKINRQLDSMIQLCSKL 86 (97)
T ss_dssp HHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT---TBCSSSCCBCSCSSCCCCHHHHHHHHHHHHH
T ss_pred hhhcCCCccCCchhhcCceeCCCCCchhHHHHHHHHh---ccccccCCcCchhhCcccHHHHHHHHHHHHH
Confidence 45678999999999999986 7999999999999984 3599999999999999999999999988554
|
| >d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: CBL species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.20 E-value=5.7e-12 Score=102.98 Aligned_cols=50 Identities=20% Similarity=0.297 Sum_probs=45.6
Q ss_pred ccccccCcccCCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCC
Q 004761 239 YFRCPLSLELMIDPVIVASGQTYERVFIQKWLDHGLNICPKTRQTLAHTN 288 (732)
Q Consensus 239 ~f~Cpi~~~lm~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~ 288 (732)
...||||++.+.|||+++|||+||+.||.+|+..++.+||.||+.+....
T Consensus 23 ~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~wl~~~~~~CP~Cr~~i~~~~ 72 (79)
T d1fbva4 23 FQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTE 72 (79)
T ss_dssp TTBCTTTSSSBCCEECSSSCCEECHHHHHHHHHTTCCSCTTTCCCCCCCC
T ss_pred CCCCccCCCcCCCeEEeCCCCeeeHHHHHHHHHHCcCcCCCCCcCccCCc
Confidence 34699999999999999999999999999999877788999999997654
|
| >d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: Acute promyelocytic leukaemia proto-oncoprotein PML species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.00 E-value=3.7e-11 Score=90.79 Aligned_cols=51 Identities=14% Similarity=0.153 Sum_probs=43.8
Q ss_pred CccccccCcccCCCceecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCccc
Q 004761 238 PYFRCPLSLELMIDPVIVASGQTYERVFIQKWLDHGLNICPKTRQTLAHTNLIPN 292 (732)
Q Consensus 238 ~~f~Cpi~~~lm~dPV~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn 292 (732)
+.+.||||++.|.|||+++|||+||+.||++| ..+||.||++++...-.|.
T Consensus 5 ~~l~C~IC~~~~~~p~~lpCgH~fC~~Ci~~~----~~~CP~Cr~~~~~~~~~~a 55 (56)
T d1bora_ 5 QFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS----GMQCPICQAPWPLGADTPA 55 (56)
T ss_dssp CCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS----SSSCSSCCSSSSCCSSCCC
T ss_pred CCCCCcccCcccCCCEEecCCCHHhHHHHHcC----CCcCcCCCCcccCCCCCCC
Confidence 44799999999999999999999999999865 4689999999877655553
|
| >d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: TFIIH Mat1 subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.92 E-value=2.4e-10 Score=89.47 Aligned_cols=53 Identities=17% Similarity=0.275 Sum_probs=43.9
Q ss_pred CccccccCcccCCCc-----eecCCCcccchHHHHHHHhcCCCCCCCCCCCCCCCCCc
Q 004761 238 PYFRCPLSLELMIDP-----VIVASGQTYERVFIQKWLDHGLNICPKTRQTLAHTNLI 290 (732)
Q Consensus 238 ~~f~Cpi~~~lm~dP-----V~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~ 290 (732)
++..||||++.+..| ++.+|||+|++.||.+|+..+..+||.||+++...++.
T Consensus 2 dd~~CpIC~~~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~~CP~CR~~i~~~~~~ 59 (65)
T d1g25a_ 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFR 59 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCCE
T ss_pred CCCCCCcCCceeecCCceEEEeCccChHhhHHHHHHHhCcCcCCCCCCCcCccccccc
Confidence 567899999876432 56789999999999999988777899999998765543
|
| >d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: Immediate early protein, IEEHV species: Equine herpesvirus 1 [TaxId: 10326]
Probab=98.80 E-value=1.2e-09 Score=86.30 Aligned_cols=43 Identities=21% Similarity=0.525 Sum_probs=39.1
Q ss_pred cccCcccCCCcee-cCCCcccchHHHHHHHhcCCCCCCCCCCCCC
Q 004761 242 CPLSLELMIDPVI-VASGQTYERVFIQKWLDHGLNICPKTRQTLA 285 (732)
Q Consensus 242 Cpi~~~lm~dPV~-~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~ 285 (732)
||||++.|.+|++ ++|||+|+..||.+|++.+ .+||.||+++.
T Consensus 8 C~IC~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~-~~CP~CR~~i~ 51 (68)
T d1chca_ 8 CPICLEDPSNYSMALPCLHAFCYVCITRWIRQN-PTCPLCKVPVE 51 (68)
T ss_dssp CSSCCSCCCSCEEETTTTEEESTTHHHHHHHHS-CSTTTTCCCCC
T ss_pred CccCCcCccCCcEEeCCCCcCcHHHHHHHHHhC-CcCCCCCcchH
Confidence 9999999999876 7999999999999999875 78999998764
|
| >d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: Not-4 N-terminal RING finger domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.67 E-value=6.5e-09 Score=77.16 Aligned_cols=46 Identities=20% Similarity=0.362 Sum_probs=39.4
Q ss_pred ccccCcccCCCc----eecCCCcccchHHHHHHHhcCCCCCCCCCCCCCC
Q 004761 241 RCPLSLELMIDP----VIVASGQTYERVFIQKWLDHGLNICPKTRQTLAH 286 (732)
Q Consensus 241 ~Cpi~~~lm~dP----V~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~ 286 (732)
-||||++-|.++ ++++|||+|++.||.+|+..++.+||.||+++.+
T Consensus 2 eCpICl~~~~~~~~~~~~~~CgH~~c~~C~~~w~~~~~~~CP~CR~~~~~ 51 (52)
T d1ur6b_ 2 ECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPE 51 (52)
T ss_dssp EETTTTEECCGGGTTCCSSSSSCCCCHHHHHHHTTTSCCBCTTTCCBCSC
T ss_pred CCcCCChhhhCCCceEEecCCCCccchHHHHHHHhhcCCCCCccCCcCCC
Confidence 599999998543 3458999999999999999777789999999865
|
| >d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: EL5 RING-H2 domain species: Rice (Oryza sativa) [TaxId: 4530]
Probab=98.49 E-value=3.5e-08 Score=73.92 Aligned_cols=48 Identities=21% Similarity=0.472 Sum_probs=40.1
Q ss_pred CCCccccccCcccCCCc---eec-CCCcccchHHHHHHHhcCCCCCCCCCCCC
Q 004761 236 IPPYFRCPLSLELMIDP---VIV-ASGQTYERVFIQKWLDHGLNICPKTRQTL 284 (732)
Q Consensus 236 ~p~~f~Cpi~~~lm~dP---V~~-~~g~ty~r~~I~~~~~~~~~~cP~~~~~l 284 (732)
+-++..||||++-|.++ +.+ .|||+|+..||.+|+.. +.+||.||+++
T Consensus 2 ~ed~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~Wl~~-~~~CP~CR~~i 53 (55)
T d1iyma_ 2 MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS-HSTCPLCRLTV 53 (55)
T ss_dssp CCCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT-CCSCSSSCCCS
T ss_pred CCCCCCCeEECccccCCCEEEEeCCCCCcccHHHHHHHHHh-CCcCCCCCCEe
Confidence 34677899999999763 344 69999999999999987 47899999875
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.44 E-value=1.5e-05 Score=88.25 Aligned_cols=263 Identities=16% Similarity=0.152 Sum_probs=165.8
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcc--------------------ChhhHHHHHhc-C--------------CHHH
Q 004761 447 VKKLIEDLNSTSNEIQASAAAELRLLAKH--------------------NMENRMIIGNC-G--------------AIPP 491 (732)
Q Consensus 447 i~~Lv~~L~s~~~~~~~~Al~~L~~La~~--------------------~~~~r~~i~~~-G--------------~I~~ 491 (732)
+..|++.|++.++.+|..|++.|..++.. ..+.+..+++. | .++.
T Consensus 12 i~~l~~~l~~~~~~~R~~a~~~l~~ia~~lg~~~~~~~lip~l~~~~~~~~ev~~~~~~~l~~~~~~~~~~~~~~~ll~~ 91 (588)
T d1b3ua_ 12 IAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLLALAEQLGTFTTLVGGPEYVHCLLPP 91 (588)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHTHHHHHHHSCHHHHHHTHHHHHHHTCCCCHHHHHHHHHHHTTCSGGGTSGGGGGGGHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCcHhhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCChhHHHHHHHH
Confidence 56688888888888888887777665431 11222222211 1 2334
Q ss_pred HHHhhccCCHHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHHhcchH
Q 004761 492 LLSLLYSEAQLTQEHAVTALLNLSINDENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRSGAV 571 (732)
Q Consensus 492 Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i 571 (732)
|..++.+++..+++.|+.+|..+...-... . ...-.++.+..+.++.....|..|+..+..+...-.... ....+
T Consensus 92 l~~l~~~~~~~Vr~~a~~~l~~i~~~~~~~-~-~~~~l~p~i~~L~~~~~~~~r~~a~~ll~~~~~~~~~~~---~~~l~ 166 (588)
T d1b3ua_ 92 LESLATVEETVVRDKAVESLRAISHEHSPS-D-LEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAV---KAELR 166 (588)
T ss_dssp HHHHTTSSCHHHHHHHHHHHHHHHTTSCHH-H-HHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHH---HHHHH
T ss_pred HHHHccCCCHHHHHHHHHHHHHHHHhCCHH-H-HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhHHH---HHHHH
Confidence 444555566667777777776665432211 1 112223333344444445556556555555543211110 11246
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhccCchhHHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCChhhHHHHHHcC
Q 004761 572 KALVDLLGSGTLRGRKDAATALFNLSIFHENKARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGEGRLAIAREG 650 (732)
Q Consensus 572 ~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~n~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~~r~~i~~~~ 650 (732)
+.+..++.+.++.+++.|+.++..++..-+. ......+++.+..++ +++..++..|+.++..++..-... .....
T Consensus 167 ~~~~~l~~D~~~~VR~~a~~~l~~~~~~~~~--~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~i~~~~~~~--~~~~~ 242 (588)
T d1b3ua_ 167 QYFRNLCSDDTPMVRRAAASKLGEFAKVLEL--DNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE--DLEAL 242 (588)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHTSCH--HHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHH--HHHHH
T ss_pred HHHHHHhccCCHHHHHHHHHHHHHHHHHhcH--HHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHhhccCCHH--HHHHH
Confidence 7788888999999999999999998875332 223356677777777 778888888999888886422111 11123
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHhhc
Q 004761 651 GIPSLVEVVESGSQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFRN 721 (732)
Q Consensus 651 ~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~ 721 (732)
.++.+..++.+.+..++..++.+|..++..-+ .......+++.+..++++..+.+|..|...|..+..
T Consensus 243 i~~~l~~~~~D~~~~Vr~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~ 310 (588)
T d1b3ua_ 243 VMPTLRQAAEDKSWRVRYMVADKFTELQKAVG---PEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCE 310 (588)
T ss_dssp THHHHHHHHTCSSHHHHHHHHHTHHHHHHHHC---HHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccccHHHHHHHHHhHHHHHHHhh---hhhhhhhhhHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 57888888888899999999999999886311 123334678999999999999999999887766543
|
| >d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: Hypothetical protein YibA species: Escherichia coli [TaxId: 562]
Probab=98.41 E-value=8.6e-06 Score=80.44 Aligned_cols=228 Identities=12% Similarity=0.054 Sum_probs=146.3
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCchHHHHHH
Q 004761 447 VKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAMIAE 526 (732)
Q Consensus 447 i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k~~i~~ 526 (732)
...|++.|.++++.++..|+..|..+.. ..+++.|+.+++++++.++..|+.+|..+.........+
T Consensus 21 ~~~L~~~L~d~~~~vR~~A~~~L~~~~~-----------~~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~~~~~~-- 87 (276)
T d1oyza_ 21 DDELFRLLDDHNSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNV-- 87 (276)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHHH--
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhhCC-----------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccccch--
Confidence 5789999999999999999999987642 145899999999999999999999999986544332222
Q ss_pred cCCHHHHH-HHHcCCCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhccCchhHHH
Q 004761 527 AGAIEPLI-HVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFHENKAR 605 (732)
Q Consensus 527 ~g~l~~Lv-~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~n~~~ 605 (732)
++.+. .++++.++.++..++.+|..+...... .....++.+...+.+.++.++..|+.++..+..
T Consensus 88 ---~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~~----~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~~~~------- 153 (276)
T d1oyza_ 88 ---FNILNNMALNDKSACVRATAIESTAQRCKKNPI----YSPKIVEQSQITAFDKSTNVRRATAFAISVIND------- 153 (276)
T ss_dssp ---HHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGG----GHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC---------
T ss_pred ---HHHHHHHHhcCCChhHHHHHHHHHHHHccccch----hhHHHHHHHHHHhcCcchHHHHHHHHHHhhcch-------
Confidence 23333 456778899999999999887643211 112356777777777788888777777665432
Q ss_pred HHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCChh----------------hHH----HH---HHcCcHHHHHHHHhc
Q 004761 606 IIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGE----------------GRL----AI---AREGGIPSLVEVVES 661 (732)
Q Consensus 606 lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~----------------~r~----~i---~~~~~I~~Lv~lL~~ 661 (732)
...++.+..++ ..+......+...+........ .+. ++ ....+++.|+..+.+
T Consensus 154 ---~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~L~~~l~d 230 (276)
T d1oyza_ 154 ---KATIPLLINLLKDPNGDVRNWAAFAININKYDNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKDKRVLSVLCDELKK 230 (276)
T ss_dssp ----CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCGGGHHHHHHHHTS
T ss_pred ---HHHHHHHHHhcccccchhhhhHHHHHHhhhccccccchhhhhhhhhhhhhhhhhhccccchhhhhhhHHHHHHHhCC
Confidence 22333344444 3333333333322222211110 010 11 113367888887764
Q ss_pred CCHHHHHHHHHHHHHHhcCChHhHHHHHhCCCHHHHHHchhcC-ChHHHHHHHHHHH
Q 004761 662 GSQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSG-TPRAKEKAQQLLS 717 (732)
Q Consensus 662 ~s~~~~e~A~~~L~~L~~~~~~~~~~v~~~G~i~~L~~Ll~~g-~~~~k~kA~~lL~ 717 (732)
. ..+..|+.+|..+.. .++++.|..++... +..++..|...|+
T Consensus 231 ~--~vr~~a~~aL~~ig~-----------~~~~~~L~~~l~~~~d~~vr~~A~~~L~ 274 (276)
T d1oyza_ 231 N--TVYDDIIEAAGELGD-----------KTLLPVLDTMLYKFDDNEIITSAIDKLK 274 (276)
T ss_dssp S--SCCHHHHHHHHHHCC-----------GGGHHHHHHHHTTSSCCHHHHHHHHHHT
T ss_pred h--HHHHHHHHHHHHcCC-----------HHHHHHHHHHHccCCCHHHHHHHHHHHc
Confidence 3 467778888876642 35788888877764 5788888877663
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.40 E-value=7e-06 Score=90.97 Aligned_cols=262 Identities=11% Similarity=0.067 Sum_probs=181.6
Q ss_pred chHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCchHHHH
Q 004761 445 PYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAMI 524 (732)
Q Consensus 445 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k~~i 524 (732)
..++.+...+...+..++..|+..+..++..-... . .+.-.+|.+..+..++....+..|+.++..+........
T Consensus 87 ~ll~~l~~l~~~~~~~Vr~~a~~~l~~i~~~~~~~--~-~~~~l~p~i~~L~~~~~~~~r~~a~~ll~~~~~~~~~~~-- 161 (588)
T d1b3ua_ 87 CLLPPLESLATVEETVVRDKAVESLRAISHEHSPS--D-LEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAV-- 161 (588)
T ss_dssp GGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHH--H-HHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHH--
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHHhCCHH--H-HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhHHH--
Confidence 34566667778888899999999999988653221 1 222345666666777777788888888877754322111
Q ss_pred HHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHhccCchhHH
Q 004761 525 AEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNLSIFHENKA 604 (732)
Q Consensus 525 ~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~n~~ 604 (732)
....++.+..++.+.++.+|..|+.++..++..-... ......++.+..++++.+..++..|+.++..++..-+..
T Consensus 162 -~~~l~~~~~~l~~D~~~~VR~~a~~~l~~~~~~~~~~--~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~i~~~~~~~- 237 (588)
T d1b3ua_ 162 -KAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELD--NVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE- 237 (588)
T ss_dssp -HHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHH--HHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHH-
T ss_pred -HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcHH--HHHHHHHHHHHHHhcCCchhhHHHHHHHHHHhhccCCHH-
Confidence 1124677788889999999999999999887643222 223457788889999999999999999999887532221
Q ss_pred HHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCChhhHHHHHHcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC-h
Q 004761 605 RIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCLHS-P 682 (732)
Q Consensus 605 ~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~~r~~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~-~ 682 (732)
.....+++.+..++ +.+..++..++.+|.+++..-.. .+.....++.+..++.+.++.++..|+..|..++..- .
T Consensus 238 -~~~~~i~~~l~~~~~D~~~~Vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~l~~ 314 (588)
T d1b3ua_ 238 -DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP--EITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSA 314 (588)
T ss_dssp -HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH--HHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCT
T ss_pred -HHHHHHHHHHHHhcccccHHHHHHHHHhHHHHHHHhhh--hhhhhhhhHHHHHHHhccchHHHHHHHHHHHHHHHHHhh
Confidence 12234677777777 77888999999999888653211 2233457899999999999999999999999988742 2
Q ss_pred HhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHH
Q 004761 683 KFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSH 718 (732)
Q Consensus 683 ~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~ 718 (732)
.......-..+++.+..++.+.++.+|..+...+..
T Consensus 315 ~~~~~~~~~~i~~~l~~~~~d~~~~vr~~~~~~l~~ 350 (588)
T d1b3ua_ 315 DCRENVIMSQILPCIKELVSDANQHVKSALASVIMG 350 (588)
T ss_dssp TTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGG
T ss_pred hhhhhhhHHHHHHHHHHhhcCCChHHHHHHHHHHhh
Confidence 222222233467777777777777777666555443
|
| >d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: Deltex protein 2 RING-H2 domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.34 E-value=1.7e-07 Score=81.57 Aligned_cols=53 Identities=11% Similarity=0.296 Sum_probs=42.7
Q ss_pred CCCCCccccccCcccCCCc------------------eecCCCcccchHHHHHHHhc----CCCCCCCCCCCCCC
Q 004761 234 VPIPPYFRCPLSLELMIDP------------------VIVASGQTYERVFIQKWLDH----GLNICPKTRQTLAH 286 (732)
Q Consensus 234 ~~~p~~f~Cpi~~~lm~dP------------------V~~~~g~ty~r~~I~~~~~~----~~~~cP~~~~~l~~ 286 (732)
+..+.+..||||++-|.+| .+++|||.|+..||.+|+.. ++.+||.||..+..
T Consensus 20 ~~~~~~~~C~IC~e~l~~~~~~~~~~~~~~~~~~~~~~~~~CgH~FH~~Ci~~Wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T d1v87a_ 20 LKVAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp CSSCCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred hcccccccccchhheecccccccccccccccccccceEECCCCChhhHHHHHHHHHhcCcCCCCccccccchhcc
Confidence 3456677899999998764 35789999999999999974 34689999987743
|
| >d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Regulatory subunit H of the V-type ATPase domain: Regulatory subunit H of the V-type ATPase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.17 E-value=5.1e-05 Score=80.34 Aligned_cols=272 Identities=12% Similarity=0.091 Sum_probs=184.4
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHh-cCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCchHHHHH-
Q 004761 448 KKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGN-CGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAMIA- 525 (732)
Q Consensus 448 ~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~-~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k~~i~- 525 (732)
..+...+.+++.-....+...+..++..+..+....-. ......+-.+..+.+...+..|+..|..+-..+..|..+.
T Consensus 125 ~~f~~~l~~~d~~~~~~s~~i~~ll~~~~~~~~~~~e~l~~~~~~l~~l~~~~~~~~~~i~v~~lq~llr~~~~R~~fw~ 204 (477)
T d1ho8a_ 125 QLFDVSLKGDFQTVLISGFNVVSLLVQNGLHNVKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWL 204 (477)
T ss_dssp HHHHHCSCSSHHHHHHHHHHHHHHHTSTTTCCHHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHT
T ss_pred HHHHHhccCchhHHHHHHHHHHHHHHhccccccchHHHHHHhhHHHHHhhcccccchHHHHHHHHHHHhcCccHHHHHHH
Confidence 34455565666556667777777777654333221111 1123334444467788899999999999988888888775
Q ss_pred -HcCCHHHHHHHHcCC-----------------CHHHHHHHHHHHHHhccCchhHHHHHhc--chHHHHHHhhcCC-CHH
Q 004761 526 -EAGAIEPLIHVLKSG-----------------NGGAKENSAAALFSLSVLEEYKAKIGRS--GAVKALVDLLGSG-TLR 584 (732)
Q Consensus 526 -~~g~l~~Lv~lL~~~-----------------~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~--g~i~~Lv~lL~~~-~~~ 584 (732)
+...+.+++.+|+.. ......+++-++|-|+..++....+... +.|+.|+++++.. ...
T Consensus 205 ~~~~~~~~l~~il~~a~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~l~~~~~~~i~~l~~i~~~s~KEK 284 (477)
T d1ho8a_ 205 HEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEK 284 (477)
T ss_dssp THHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHH
T ss_pred cccchHHHHHHHHHHHhcccccchhhcccCCCccHHHHHHHHHHHHHHHcCHHHHHHHHHhhhHHHHHHHHHHHhhhHHH
Confidence 345677777777531 2467889999999999988777777665 5699999999754 588
Q ss_pred HHHHHHHHHHHhccCch--h----HHHHHhhchHHHHHHhc---CCChHHHHHHHHHHHH-------HhC----------
Q 004761 585 GRKDAATALFNLSIFHE--N----KARIIQAGAVKHLVDLM---DPSTGMVDKAVALLAN-------LST---------- 638 (732)
Q Consensus 585 ~~~~Al~aL~nLs~~~~--n----~~~lv~~G~V~~Ll~lL---~~~~~l~e~al~iL~n-------La~---------- 638 (732)
+.+-++.+|.|++.... + ...|+..++.+.+-.+. -.++++.+..-.+-.. +++
T Consensus 285 vvRv~l~~l~Nll~~~~~~~~~~~~~~~v~~~~l~~l~~L~~r~~~Dedl~edl~~L~~~L~~~~k~lTsfd~Y~~Ev~S 364 (477)
T d1ho8a_ 285 VSRLCISIILQCCSTRVKQHKKVIKQLLLLGNALPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDS 364 (477)
T ss_dssp HHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhhhhhhHHHHHHHHcchhHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHhc
Confidence 99999999999987532 2 23456666665544433 2456554433222111 121
Q ss_pred -----ChhhH-HHHHH--------cC--cHHHHHHHHhc----------CCHHHHHHHHHHHHHHhcCChHhHHHHHhCC
Q 004761 639 -----VGEGR-LAIAR--------EG--GIPSLVEVVES----------GSQRGKENAASILLQLCLHSPKFCTLVLQEG 692 (732)
Q Consensus 639 -----~~~~r-~~i~~--------~~--~I~~Lv~lL~~----------~s~~~~e~A~~~L~~L~~~~~~~~~~v~~~G 692 (732)
.|..+ +.+.. .+ .+..|+++|.+ .++.+..-||.=+..+|++-|..+..+-+.|
T Consensus 365 g~L~WSP~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~~~~~~~~~~s~D~~~lAVAc~DiGefvr~~P~gr~il~~lg 444 (477)
T d1ho8a_ 365 KLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTG 444 (477)
T ss_dssp TCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHS
T ss_pred CCCCCCCCcCChhHHHHHHHhhcccchHHHHHHHHHHhhcccccccccCCCcceeehhhhhHHHHHHHCcchhHHHHHcC
Confidence 12222 22321 22 37888999862 2455667788889999999899888888899
Q ss_pred CHHHHHHchhcCChHHHHHHHHHHHHh
Q 004761 693 AVPPLVGLSQSGTPRAKEKAQQLLSHF 719 (732)
Q Consensus 693 ~i~~L~~Ll~~g~~~~k~kA~~lL~~l 719 (732)
+=..++.++.+.++.+|..|..+++-+
T Consensus 445 ~K~~vM~Lm~h~d~~Vr~eAL~avQkl 471 (477)
T d1ho8a_ 445 GKADIMELLNHSDSRVKYEALKATQAI 471 (477)
T ss_dssp HHHHHHHHTSCSSHHHHHHHHHHHHHH
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999888655
|
| >d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: Variant RING domain domain: IE1B protein (ORF K3), N-terminal domain species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]
Probab=98.15 E-value=7.5e-07 Score=67.87 Aligned_cols=49 Identities=14% Similarity=0.135 Sum_probs=42.1
Q ss_pred CccccccCcccCCCceecCC-----CcccchHHHHHHHhc-CCCCCCCCCCCCCC
Q 004761 238 PYFRCPLSLELMIDPVIVAS-----GQTYERVFIQKWLDH-GLNICPKTRQTLAH 286 (732)
Q Consensus 238 ~~f~Cpi~~~lm~dPV~~~~-----g~ty~r~~I~~~~~~-~~~~cP~~~~~l~~ 286 (732)
+...|+||++-+.+|.+.++ +|.|.+.||++|+.. ++.+||.|++++..
T Consensus 5 d~~~C~IC~~~~~~~~~~~c~c~~c~h~~H~~Cl~~W~~~~~~~~CP~Cr~~~~~ 59 (60)
T d1vyxa_ 5 DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp SCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCCCCccCCccCCCceeEecccCCCCCEEcHHHHHHHHhhCCCCCCcccCCeeec
Confidence 55779999999999988876 499999999999974 66799999998753
|
| >d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: Hypothetical protein YibA species: Escherichia coli [TaxId: 562]
Probab=98.03 E-value=0.00022 Score=69.77 Aligned_cols=204 Identities=12% Similarity=0.036 Sum_probs=127.4
Q ss_pred hcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHH
Q 004761 485 NCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAK 564 (732)
Q Consensus 485 ~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~ 564 (732)
+....+.|+.+|.++++.++..|+.+|..+.. ..+++.|+.++++.++.++..|+.+|..+.........
T Consensus 17 ~~~~~~~L~~~L~d~~~~vR~~A~~~L~~~~~----------~~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~~~~~ 86 (276)
T d1oyza_ 17 KKLNDDELFRLLDDHNSLKRISSARVLQLRGG----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDN 86 (276)
T ss_dssp HTSCHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHH
T ss_pred ccCCHHHHHHHhcCCCHHHHHHHHHHHHhhCC----------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccccc
Confidence 34567789999999999999999999977642 24588999999999999999999999988654333222
Q ss_pred HHhcchHHHHHH-hhcCCCHHHHHHHHHHHHHhccCchhHHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCChhh
Q 004761 565 IGRSGAVKALVD-LLGSGTLRGRKDAATALFNLSIFHENKARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGEG 642 (732)
Q Consensus 565 i~~~g~i~~Lv~-lL~~~~~~~~~~Al~aL~nLs~~~~n~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~~ 642 (732)
+ ++.+.. ++++.++.++..|+.+|.+++...... ...+++.+...+ +.+..+...++.++.....
T Consensus 87 ~-----~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~~~----~~~~~~~l~~~~~d~~~~vr~~a~~~l~~~~~---- 153 (276)
T d1oyza_ 87 V-----FNILNNMALNDKSACVRATAIESTAQRCKKNPIY----SPKIVEQSQITAFDKSTNVRRATAFAISVIND---- 153 (276)
T ss_dssp H-----HHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGG----HHHHHHHHHHHTTCSCHHHHHHHHHHHHTC------
T ss_pred h-----HHHHHHHHhcCCChhHHHHHHHHHHHHccccchh----hHHHHHHHHHHhcCcchHHHHHHHHHHhhcch----
Confidence 2 333433 467788999999999999887643321 124566677767 6677776666665554321
Q ss_pred HHHHHHcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHhHHHH----------------------HhCCCHHHHHHc
Q 004761 643 RLAIAREGGIPSLVEVVESGSQRGKENAASILLQLCLHSPKFCTLV----------------------LQEGAVPPLVGL 700 (732)
Q Consensus 643 r~~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~v----------------------~~~G~i~~L~~L 700 (732)
...++.+..++...+...+..+..++..+....+.....+ ....+++.|+..
T Consensus 154 ------~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~L~~~ 227 (276)
T d1oyza_ 154 ------KATIPLLINLLKDPNGDVRNWAAFAININKYDNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKDKRVLSVLCDE 227 (276)
T ss_dssp -------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred ------HHHHHHHHHhcccccchhhhhHHHHHHhhhccccccchhhhhhhhhhhhhhhhhhccccchhhhhhhHHHHHHH
Confidence 2234444455544444444444444433333222111100 012357777777
Q ss_pred hhcCChHHHHHHHHHHHHh
Q 004761 701 SQSGTPRAKEKAQQLLSHF 719 (732)
Q Consensus 701 l~~g~~~~k~kA~~lL~~l 719 (732)
+++. .++..|..+|..+
T Consensus 228 l~d~--~vr~~a~~aL~~i 244 (276)
T d1oyza_ 228 LKKN--TVYDDIIEAAGEL 244 (276)
T ss_dssp HTSS--SCCHHHHHHHHHH
T ss_pred hCCh--HHHHHHHHHHHHc
Confidence 7643 3555566666555
|
| >d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.95 E-value=2.3e-06 Score=70.49 Aligned_cols=43 Identities=16% Similarity=0.481 Sum_probs=36.3
Q ss_pred cccCcccCCCc------------------eecCCCcccchHHHHHHHhcCCCCCCCCCCCCC
Q 004761 242 CPLSLELMIDP------------------VIVASGQTYERVFIQKWLDHGLNICPKTRQTLA 285 (732)
Q Consensus 242 Cpi~~~lm~dP------------------V~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~ 285 (732)
|+||++-|.+| ++++|||.|...||.+|+... .+||.||+++.
T Consensus 24 C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~-~~CP~CR~~~~ 84 (88)
T d3dplr1 24 CAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR-QVCPLDNREWE 84 (88)
T ss_dssp CSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTC-SBCSSSCSBCC
T ss_pred CEEccchhhCccccccccccccccccCCeEEccccCcccHHHHHHHHHHC-CcCCCCCCccc
Confidence 88888877762 346899999999999999875 78999999875
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.69 E-value=0.00032 Score=73.38 Aligned_cols=278 Identities=11% Similarity=0.038 Sum_probs=167.3
Q ss_pred cCchHHHHHHHhcCC--CHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccC--CHHHHHHHHHHHHHhhcCC
Q 004761 443 TTPYVKKLIEDLNST--SNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSE--AQLTQEHAVTALLNLSIND 518 (732)
Q Consensus 443 ~~~~i~~Lv~~L~s~--~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~--~~~v~~~A~~~L~nLs~~~ 518 (732)
+...++.+++.+.++ +...+..++..+..++.........-.-...++.++..+.+. +..++..|+.++.++....
T Consensus 125 ~~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~ 204 (458)
T d1ibrb_ 125 WPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFT 204 (458)
T ss_dssp CTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTT
T ss_pred CcchhHHHHHHHHhhcchHHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhh
Confidence 456789999988753 455666777777766643221110001113456677777653 5788999999998886542
Q ss_pred chH--HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhH-HHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHH
Q 004761 519 ENK--AMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYK-AKIGRSGAVKALVDLLGSGTLRGRKDAATALFN 595 (732)
Q Consensus 519 ~~k--~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k-~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~n 595 (732)
... ........++.+...+.+++++.+..++.+|..+....... .........+.+...+.+.+...+..|+..+..
T Consensus 205 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~l~~ 284 (458)
T d1ibrb_ 205 KANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSN 284 (458)
T ss_dssp HHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHhHhhHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 211 11122234566777788888999999999998876421100 001111233445566677788888888888887
Q ss_pred hccCch---------------------hHHHHHhhchHHHHHHhc-C-------CChHHHHHHHHHHHHHhCChhhHHHH
Q 004761 596 LSIFHE---------------------NKARIIQAGAVKHLVDLM-D-------PSTGMVDKAVALLANLSTVGEGRLAI 646 (732)
Q Consensus 596 Ls~~~~---------------------n~~~lv~~G~V~~Ll~lL-~-------~~~~l~e~al~iL~nLa~~~~~r~~i 646 (732)
++.... .-....-...++.+.+.+ . .+..+...+..++..++..... .+
T Consensus 285 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~--~~ 362 (458)
T d1ibrb_ 285 VCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED--DI 362 (458)
T ss_dssp HHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT--TH
T ss_pred HHHHHHHHHHhhhhHHHhhhHHHHHHHHHHHHHHHHHhhhHHhhhhcchhhhccccccHHHHHHHHHHHHHHhccH--hh
Confidence 753211 001111223444455544 1 1223555566666666542211 11
Q ss_pred HHcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC-hHhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHhhcccc
Q 004761 647 AREGGIPSLVEVVESGSQRGKENAASILLQLCLHS-PKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFRNQRE 724 (732)
Q Consensus 647 ~~~~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~-~~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~~~~ 724 (732)
.. ..++.+.+.+.+.+...++.|+.+|..++.+. ++..... -..+++.|+..+++.++++|..|..+|..+.++-+
T Consensus 363 ~~-~l~~~i~~~l~s~~~~~r~aal~~l~~i~~~~~~~~~~~~-l~~i~~~l~~~l~d~~~~VR~~a~~~l~~i~~~~~ 439 (458)
T d1ibrb_ 363 VP-HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPL-VIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLP 439 (458)
T ss_dssp HH-HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTT-TTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGG
T ss_pred hh-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCHhHHHHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhh
Confidence 11 13556667778888999999999999988642 2211111 13578999999999999999999999988876543
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.68 E-value=0.00024 Score=82.53 Aligned_cols=270 Identities=14% Similarity=0.065 Sum_probs=160.3
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcC--CchHHH
Q 004761 446 YVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSIN--DENKAM 523 (732)
Q Consensus 446 ~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~--~~~k~~ 523 (732)
.++.+.+.+.+.++..+..|+.++..++....+.-.-.. ...++.|+..+++.++.++..|+++|..++.. +.....
T Consensus 396 ~l~~l~~~l~s~~~~~reaa~~alg~i~eg~~~~~~~~l-~~li~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~ 474 (888)
T d1qbkb_ 396 ILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYL-PELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDT 474 (888)
T ss_dssp HHHHHHHTTTSSSHHHHHHHHHHHHHHTTTSHHHHTTTH-HHHHHHHHHHTTSSCHHHHHHHHHHHHHTHHHHHSSCHHH
T ss_pred HHHHHHHhhccchhHHHHHHHHHhhhhhhhHHHHhcccc-hhhhHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 345566777888999999999999998865433211111 13577888888999999999999999988642 222222
Q ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHHh--cchHHHHHHhhcCCCHHHHHHHHHHHHHhccC--
Q 004761 524 IAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGR--SGAVKALVDLLGSGTLRGRKDAATALFNLSIF-- 599 (732)
Q Consensus 524 i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~--~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~-- 599 (732)
. -...++.++..+.+.++.++..|+.+|.++..... ..+.. ...++.|+..+..........+..++..++..
T Consensus 475 ~-~~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~--~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~al~~l~~~~~ 551 (888)
T d1qbkb_ 475 Y-LKPLMTELLKRILDSNKRVQEAACSAFATLEEEAC--TELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVG 551 (888)
T ss_dssp H-TTTHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHT--TSSGGGHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHG
T ss_pred h-hhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh--hhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhh
Confidence 2 24578888988988999999999999998864211 11111 24667788888877766666666666666432
Q ss_pred -chhHHHHHhhchHHHHHHhc---CCChHHHHHHHHHHHHHhC--Chh---hHHHHHHcCcHHHHHHH--------Hh--
Q 004761 600 -HENKARIIQAGAVKHLVDLM---DPSTGMVDKAVALLANLST--VGE---GRLAIAREGGIPSLVEV--------VE-- 660 (732)
Q Consensus 600 -~~n~~~lv~~G~V~~Ll~lL---~~~~~l~e~al~iL~nLa~--~~~---~r~~i~~~~~I~~Lv~l--------L~-- 660 (732)
.-++..+++ ..++.+.+.. ..+.......+.++..++. ... ....+.+. .+..+... ..
T Consensus 552 ~~~~~~~~~~-~l~~~l~~~~~~~~~~~~~~~~~le~l~~i~~~~~~~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~ 629 (888)
T d1qbkb_ 552 HHLNKPEYIQ-MLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQR-CVNLVQKTLAQAMLNNAQPD 629 (888)
T ss_dssp GGGCSHHHHH-HHHHHHHHHHTTSCTTCTTHHHHHHHHHHHHHHSTTTTHHHHHHHHHH-HHHHHHHHHHHHHHHHHCTT
T ss_pred ccccchHHHH-HHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHH-HHHHHHHHHHHHHHHhcccc
Confidence 112222222 3455555544 2222223334444544432 111 11111110 11111111 11
Q ss_pred ---cCCHHHHHHHHHHHHHHhcC-ChHhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHhhc
Q 004761 661 ---SGSQRGKENAASILLQLCLH-SPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFRN 721 (732)
Q Consensus 661 ---~~s~~~~e~A~~~L~~L~~~-~~~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~ 721 (732)
.........+..++..+... +......+.....++.+...+++.++.+++.|..++.-+..
T Consensus 630 ~~~~~~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~llgdl~~ 694 (888)
T d1qbkb_ 630 QYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTK 694 (888)
T ss_dssp TSCCCCTHHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Confidence 12344555666666666653 22333444456678889999988899999999888876644
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.58 E-value=0.00011 Score=87.97 Aligned_cols=270 Identities=12% Similarity=0.081 Sum_probs=171.6
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCchHHHHH
Q 004761 446 YVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAMIA 525 (732)
Q Consensus 446 ~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k~~i~ 525 (732)
.|..|++.+.+.+++.|..|+..|......+...-..-.....++.|+.+|.+.++++|..|+.+|..+...-.... +
T Consensus 4 ~~~~ll~k~~~~D~d~R~ma~~dl~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~k~l~~l~~~~~~~~--~ 81 (1207)
T d1u6gc_ 4 HISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQ--V 81 (1207)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHH--H
T ss_pred hHHHHHHhcCCCCHhHHHHHHHHHHHHHhhcccccChHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCcHhh--H
Confidence 46789999999999999999987776543211000000011357789999999999999999999999875432211 1
Q ss_pred HcCCHHHHHHHHcCCCHHHHHHHHHHHHHhcc----CchhH--HHHHhcchHHHHHHhhcC-CCHHHHHHHHHHHHHhcc
Q 004761 526 EAGAIEPLIHVLKSGNGGAKENSAAALFSLSV----LEEYK--AKIGRSGAVKALVDLLGS-GTLRGRKDAATALFNLSI 598 (732)
Q Consensus 526 ~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~----~~~~k--~~i~~~g~i~~Lv~lL~~-~~~~~~~~Al~aL~nLs~ 598 (732)
...++.|+..+.+++...+..+..+|..+.. ..... ........++.+...+.. .+..++..|+.+|..+..
T Consensus 82 -~~l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~~ 160 (1207)
T d1u6gc_ 82 -ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLS 160 (1207)
T ss_dssp -HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHhcCCchhhhHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHH
Confidence 2356777777777777777777777665532 11000 011111344555555544 467888889999988865
Q ss_pred CchhHHHHHhhchHHHHHHhc-CCChHHHHHHHHHHHHHhCChhhHHHHHHcCcHHHHHHHHh-cCCHHHHHHHHHHHHH
Q 004761 599 FHENKARIIQAGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGEGRLAIAREGGIPSLVEVVE-SGSQRGKENAASILLQ 676 (732)
Q Consensus 599 ~~~n~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~~r~~i~~~~~I~~Lv~lL~-~~s~~~~e~A~~~L~~ 676 (732)
..+.-..-....+++.++..+ +++..++..|+.+|..|+..-... . -...+..+++.+. +.+...+..++.++..
T Consensus 161 ~~g~~l~~~~~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~~--~-~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~ 237 (1207)
T d1u6gc_ 161 RQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI--V-FVDLIEHLLSELSKNDSMSTTRTYIQCIAA 237 (1207)
T ss_dssp HTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHH
T ss_pred HhhHhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHCCHH--H-HHHHHHHHHHHHccCCCHHHHHHHHHHHHH
Confidence 322111111234677788888 778889999999999997643211 1 1234666666554 3444556667788888
Q ss_pred HhcCChHhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHhhcc
Q 004761 677 LCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFRNQ 722 (732)
Q Consensus 677 L~~~~~~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~~ 722 (732)
++...+...... -..+++.+...++..++..++.|..++..+-..
T Consensus 238 l~~~~~~~~~~~-l~~i~~~l~~~l~~~~~~~r~~al~~l~~l~~~ 282 (1207)
T d1u6gc_ 238 ISRQAGHRIGEY-LEKIIPLVVKFCNVDDDELREYCIQAFESFVRR 282 (1207)
T ss_dssp HHHHSSGGGTTS-CTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHC
T ss_pred HHHHcchhhHHH-HHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHh
Confidence 877543321110 135788999999999999999998888777544
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.32 E-value=0.00085 Score=77.72 Aligned_cols=272 Identities=12% Similarity=0.042 Sum_probs=155.4
Q ss_pred chHHHHHHHhcCCCHHHHHHHHHHHHHHhccChh-hHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcC--CchH
Q 004761 445 PYVKKLIEDLNSTSNEIQASAAAELRLLAKHNME-NRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSIN--DENK 521 (732)
Q Consensus 445 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~-~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~--~~~k 521 (732)
..++.++..+.+.++.++..|++.|..++..... .... .-...++.++..+.+.++.+++.|+.+|.++... +...
T Consensus 436 ~li~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~-~~~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~~l~ 514 (888)
T d1qbkb_ 436 ELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDT-YLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELV 514 (888)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHTHHHHHSSCHHH-HTTTHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTTSSG
T ss_pred hhhHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhhhh-hhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhh
Confidence 4567788889999999999999999888742211 1111 1235788888888889999999999999998642 1111
Q ss_pred HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccC---chhHHHHHhcchHHHHHHhhcC--CCHHHHHHHHHHHHHh
Q 004761 522 AMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVL---EEYKAKIGRSGAVKALVDLLGS--GTLRGRKDAATALFNL 596 (732)
Q Consensus 522 ~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~---~~~k~~i~~~g~i~~Lv~lL~~--~~~~~~~~Al~aL~nL 596 (732)
..+ ...++.++..+.......+..+..++..++.. .-.+..+.. ..++.+.+.... .+.......+.++..+
T Consensus 515 p~~--~~il~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~-~l~~~l~~~~~~~~~~~~~~~~~le~l~~i 591 (888)
T d1qbkb_ 515 PYL--AYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQ-MLMPPLIQKWNMLKDEDKDLFPLLECLSSV 591 (888)
T ss_dssp GGH--HHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHGGGGCSHHHHH-HHHHHHHHHHTTSCTTCTTHHHHHHHHHHH
T ss_pred hHH--HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhccccchHHHH-HHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 111 22456667777776666665555555555421 111111111 234555554432 1111222334444444
Q ss_pred ccC--ch---hHHHHHh-------hchHHHHHHhc------CCChHHHHHHHHHHHHHhCCh--hhHHHHHHcCcHHHHH
Q 004761 597 SIF--HE---NKARIIQ-------AGAVKHLVDLM------DPSTGMVDKAVALLANLSTVG--EGRLAIAREGGIPSLV 656 (732)
Q Consensus 597 s~~--~~---n~~~lv~-------~G~V~~Ll~lL------~~~~~l~e~al~iL~nLa~~~--~~r~~i~~~~~I~~Lv 656 (732)
... .. ....+.. ......+.... ..+......++.++..++..- .....+.....++.+.
T Consensus 592 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~ 671 (888)
T d1qbkb_ 592 ATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMY 671 (888)
T ss_dssp HHHSTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHH
T ss_pred HHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHH
Confidence 321 11 1111111 11111111111 124556667777777765421 1122233345678888
Q ss_pred HHHhcCCHHHHHHHHHHHHHHhcCChHhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHhhc
Q 004761 657 EVVESGSQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFRN 721 (732)
Q Consensus 657 ~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~ 721 (732)
..+.+.++.+++.|..++..++...+......++ ..++.|..-+.+....++..|.+++..+..
T Consensus 672 ~~l~~~~~~vr~~a~~llgdl~~~~~~~~~~~l~-~~~~~l~~~L~~~~~~v~~~a~~~ig~ia~ 735 (888)
T d1qbkb_ 672 QCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIA-DFMPILGTNLNPEFISVCNNATWAIGEISI 735 (888)
T ss_dssp HHHTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHH-HHHHHHHHTCCGGGHHHHHHHHHHHHHHHH
T ss_pred HHhCCCChHHHHHHHHHHHHHHHhhhHHHHHHHH-HHHHHHHHHhCcCCHHHHHHHHHHHHHHHH
Confidence 8888899999999999998888754443222222 256777777777777888888888876643
|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.28 E-value=0.0024 Score=72.14 Aligned_cols=263 Identities=13% Similarity=0.074 Sum_probs=162.5
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcc--CCHHHHHHHHHHHHHhhcCCch-H-H-
Q 004761 448 KKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYS--EAQLTQEHAVTALLNLSINDEN-K-A- 522 (732)
Q Consensus 448 ~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s--~~~~v~~~A~~~L~nLs~~~~~-k-~- 522 (732)
+.|...+.+++++.+..|-..|..+...+. .+++..|...+.+ .+..++..|.-.|.|....... . .
T Consensus 8 ~~L~~~~~s~d~~~r~~Ae~~L~~~~~~~~--------~~~~~~l~~il~~~~~~~~~r~~A~i~lkn~i~~~~~~~~~~ 79 (861)
T d2bpta1 8 QLLENSILSPDQNIRLTSETQLKKLSNDNF--------LQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQ 79 (861)
T ss_dssp HHHHHHHHCSSHHHHHHHHHHHHHHHHHCH--------HHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhcCc--------hHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhcccchhhhh
Confidence 334455678899999999999988875542 2567778888865 3577888888888776432211 0 0
Q ss_pred ---HHH-------HcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCCC-HHHHHHHHH
Q 004761 523 ---MIA-------EAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGT-LRGRKDAAT 591 (732)
Q Consensus 523 ---~i~-------~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~-~~~~~~Al~ 591 (732)
... ....-..++..|.+.+..++..++.++..++..+-... .....++.|+..+.+.+ ...+..|+.
T Consensus 80 ~~~~~~~~i~~~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~i~~~~~p~~--~wpeli~~L~~~~~s~~~~~~~~~al~ 157 (861)
T d2bpta1 80 FAQRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHG--AWPELMKIMVDNTGAEQPENVKRASLL 157 (861)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGT--CCHHHHHHHHHHTSTTSCHHHHHHHHH
T ss_pred HHhhhHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCCcC--chHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 000 11223456677788888899888888887764221000 01246788888887654 567778899
Q ss_pred HHHHhccCchhHHHHHh---hchHHHHHHhc---CCChHHHHHHHHHHHHHhCChhhHH--HHHHcCcHHHHHHHHhcCC
Q 004761 592 ALFNLSIFHENKARIIQ---AGAVKHLVDLM---DPSTGMVDKAVALLANLSTVGEGRL--AIAREGGIPSLVEVVESGS 663 (732)
Q Consensus 592 aL~nLs~~~~n~~~lv~---~G~V~~Ll~lL---~~~~~l~e~al~iL~nLa~~~~~r~--~i~~~~~I~~Lv~lL~~~s 663 (732)
+|..++..-+....-.- ..++..++..+ ..+..+...++.++.++...-.... .......++.+...+...+
T Consensus 158 ~l~~i~e~~~~~~~~~~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 237 (861)
T d2bpta1 158 ALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAED 237 (861)
T ss_dssp HHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSC
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhHhHHhhhhhhHHHHhHHHHhcCCC
Confidence 99988754332211111 12334444444 3457788889999988865432211 1111224667777888899
Q ss_pred HHHHHHHHHHHHHHhcCChHhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHhh
Q 004761 664 QRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFR 720 (732)
Q Consensus 664 ~~~~e~A~~~L~~L~~~~~~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~ 720 (732)
++.+..|+.+|..++...++.....+..-+...+.....+.++.++..|..++..+.
T Consensus 238 ~~~~~~~~~~l~~i~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~v~~~~~~~l~~l~ 294 (861)
T d2bpta1 238 IEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTIC 294 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHH
Confidence 999999999999998754433222222222233444555667788888887776553
|
| >d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: MTH187 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=97.17 E-value=0.00035 Score=59.23 Aligned_cols=88 Identities=28% Similarity=0.272 Sum_probs=74.3
Q ss_pred CCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHH
Q 004761 487 GAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIG 566 (732)
Q Consensus 487 G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~ 566 (732)
.+++.|+..|.++++.++..|+.+|.++.. .+.++.|+.+|++.++.+|..|+.+|..+.
T Consensus 22 ~~~~~L~~~l~d~~~~vR~~a~~~L~~~~~----------~~~~~~L~~~l~d~~~~VR~~a~~aL~~i~---------- 81 (111)
T d1te4a_ 22 EAFEPLLESLSNEDWRIRGAAAWIIGNFQD----------ERAVEPLIKLLEDDSGFVRSGAARSLEQIG---------- 81 (111)
T ss_dssp TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS----------HHHHHHHHHHHHHCCTHHHHHHHHHHHHHC----------
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhcch----------hhhHHHHHhhhccchhHHHHHHHHHHHHhC----------
Confidence 467889999999999999999999976641 235788999999999999999999997653
Q ss_pred hcchHHHHHHhhcCCCHHHHHHHHHHHH
Q 004761 567 RSGAVKALVDLLGSGTLRGRKDAATALF 594 (732)
Q Consensus 567 ~~g~i~~Lv~lL~~~~~~~~~~Al~aL~ 594 (732)
..++++.|..++++.++.++..|+.+|.
T Consensus 82 ~~~~~~~L~~ll~d~~~~vr~~A~~aL~ 109 (111)
T d1te4a_ 82 GERVRAAMEKLAETGTGFARKVAVNYLE 109 (111)
T ss_dssp SHHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred ccchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 3467899999999999999999988873
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.04 E-value=0.00098 Score=79.49 Aligned_cols=229 Identities=16% Similarity=0.108 Sum_probs=145.1
Q ss_pred CchHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHHHHHhhcC----Cc
Q 004761 444 TPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTALLNLSIN----DE 519 (732)
Q Consensus 444 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~----~~ 519 (732)
...++.+++.|...++++|..|+++|..++..-++.. . ...++.|+..+.+++...+..+..+|..+... ..
T Consensus 44 ~~i~~~ll~~L~D~~~~Vq~~A~k~l~~l~~~~~~~~---~-~~l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~ 119 (1207)
T d1u6gc_ 44 RKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQ---V-ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASS 119 (1207)
T ss_dssp HHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHH---H-HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCcHhh---H-HHHHHHHHHHhcCCchhhhHHHHHHHHHHHHhcccccc
Confidence 3467889999999999999999999999987654332 1 13566777777777777777777777665321 11
Q ss_pred --hHHHHHHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 004761 520 --NKAMIAEAGAIEPLIHVLKS-GNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATALFNL 596 (732)
Q Consensus 520 --~k~~i~~~g~l~~Lv~lL~~-~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nL 596 (732)
..........++.+...+.. .+..++..++.+|..+......-..-....+++.++..+.+.++.+++.|+.+|..|
T Consensus 120 ~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~~~~g~~l~~~~~~il~~l~~~l~~~~~~vR~~A~~~l~~l 199 (1207)
T d1u6gc_ 120 GSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHL 199 (1207)
T ss_dssp -CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 11111122234445554444 357788888888887753111000000124677888888888999999999999999
Q ss_pred ccCchhHHHHHhhchHHHHHHhc--CCChHHHHHHHHHHHHHhCChhhHHHHHH--cCcHHHHHHHHhcCCHHHHHHHHH
Q 004761 597 SIFHENKARIIQAGAVKHLVDLM--DPSTGMVDKAVALLANLSTVGEGRLAIAR--EGGIPSLVEVVESGSQRGKENAAS 672 (732)
Q Consensus 597 s~~~~n~~~lv~~G~V~~Ll~lL--~~~~~l~e~al~iL~nLa~~~~~r~~i~~--~~~I~~Lv~lL~~~s~~~~e~A~~ 672 (732)
+.+-... .-...++.++..+ +.+......++.++..++.....+ +.. ...++.+++.+...++..++.++.
T Consensus 200 ~~~~~~~---~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~l~~~~~~~--~~~~l~~i~~~l~~~l~~~~~~~r~~al~ 274 (1207)
T d1u6gc_ 200 VMSCGNI---VFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHR--IGEYLEKIIPLVVKFCNVDDDELREYCIQ 274 (1207)
T ss_dssp TTTC-------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGG--GTTSCTTHHHHHHHHHSSCCTTTHHHHHH
T ss_pred HHHCCHH---HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcchh--hHHHHHHHHHHHHHHhcCccHHHHHHHHH
Confidence 8753321 1134566777666 333334445666666665422111 112 245788888898888889999999
Q ss_pred HHHHHhcCC
Q 004761 673 ILLQLCLHS 681 (732)
Q Consensus 673 ~L~~L~~~~ 681 (732)
++..++...
T Consensus 275 ~l~~l~~~~ 283 (1207)
T d1u6gc_ 275 AFESFVRRC 283 (1207)
T ss_dssp HHHHHHHCT
T ss_pred HHHHHHHhC
Confidence 988887643
|
| >d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Regulatory subunit H of the V-type ATPase domain: Regulatory subunit H of the V-type ATPase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.98 E-value=0.039 Score=57.74 Aligned_cols=216 Identities=11% Similarity=0.059 Sum_probs=147.0
Q ss_pred CchHHHHHHHhcC-CCHHHHHHHHHHHHHHhccChhhHH---HHHhcC--CHHHHHHhhccCCHHHHHHHHHHHHHhhcC
Q 004761 444 TPYVKKLIEDLNS-TSNEIQASAAAELRLLAKHNMENRM---IIGNCG--AIPPLLSLLYSEAQLTQEHAVTALLNLSIN 517 (732)
Q Consensus 444 ~~~i~~Lv~~L~s-~~~~~~~~Al~~L~~La~~~~~~r~---~i~~~G--~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~ 517 (732)
...+..++..|.. ..++.....+..+..|...++.... .+.+.. .-+++..++.+++.-+...+..++..++..
T Consensus 73 ~~~~~~~l~lL~~~sk~d~vqyvL~Li~dLL~~d~~~~~~~~~~~~~~~~~~~~f~~~l~~~d~~~~~~s~~i~~ll~~~ 152 (477)
T d1ho8a_ 73 GKTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQN 152 (477)
T ss_dssp STTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTST
T ss_pred cHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHhcCcchhHHHHHHhhCccchhHHHHHhccCchhHHHHHHHHHHHHHHhc
Confidence 4457888888874 5677888888888888766543222 222222 223456666667777777777777777654
Q ss_pred CchHHHHHH--cCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHHh--cchHHHHHHhhcC--C----------
Q 004761 518 DENKAMIAE--AGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGR--SGAVKALVDLLGS--G---------- 581 (732)
Q Consensus 518 ~~~k~~i~~--~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~--~g~i~~Lv~lL~~--~---------- 581 (732)
........+ ......+-.+...++.+....++..+..|...+.+|..+.. ...+++|+++|+. +
T Consensus 153 ~~~~~~~~e~l~~~~~~l~~l~~~~~~~~~~i~v~~lq~llr~~~~R~~fw~~~~~~~~~l~~il~~a~~~~~~~~~~~~ 232 (477)
T d1ho8a_ 153 GLHNVKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVAT 232 (477)
T ss_dssp TTCCHHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC----------
T ss_pred cccccchHHHHHHhhHHHHHhhcccccchHHHHHHHHHHHhcCccHHHHHHHcccchHHHHHHHHHHHhcccccchhhcc
Confidence 322122111 12233344444667788888888999999999999998864 3577888887753 1
Q ss_pred -----CHHHHHHHHHHHHHhccCchhHHHHHhh--chHHHHHHhc--CCChHHHHHHHHHHHHHhCChh------hHHHH
Q 004761 582 -----TLRGRKDAATALFNLSIFHENKARIIQA--GAVKHLVDLM--DPSTGMVDKAVALLANLSTVGE------GRLAI 646 (732)
Q Consensus 582 -----~~~~~~~Al~aL~nLs~~~~n~~~lv~~--G~V~~Ll~lL--~~~~~l~e~al~iL~nLa~~~~------~r~~i 646 (732)
..+....++.+++-|+..++....+.+. +.++.|++++ +....++.-++++|.|++..+. ....+
T Consensus 233 ~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~l~~~~~~~i~~l~~i~~~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~ 312 (477)
T d1ho8a_ 233 NSNHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLL 312 (477)
T ss_dssp ---CCHHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHH
T ss_pred cCCCccHHHHHHHHHHHHHHHcCHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHH
Confidence 2466889999999999998888888875 5699999998 7788999999999999987532 12344
Q ss_pred HHcCcHHHHHHHHh
Q 004761 647 AREGGIPSLVEVVE 660 (732)
Q Consensus 647 ~~~~~I~~Lv~lL~ 660 (732)
+..++++. ++.|.
T Consensus 313 v~~~~l~~-l~~L~ 325 (477)
T d1ho8a_ 313 LLGNALPT-VQSLS 325 (477)
T ss_dssp HHHCHHHH-HHHHH
T ss_pred HHcchhHH-HHHHh
Confidence 55555554 45453
|
| >d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: UbcM4-interacting protein 4 (KIAA0161) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.91 E-value=0.00025 Score=58.57 Aligned_cols=44 Identities=18% Similarity=0.386 Sum_probs=33.6
Q ss_pred cccccCcccCC--C-ceecCCCcccchHHHHHHHh----cCC---CCCCCCCCC
Q 004761 240 FRCPLSLELMI--D-PVIVASGQTYERVFIQKWLD----HGL---NICPKTRQT 283 (732)
Q Consensus 240 f~Cpi~~~lm~--d-PV~~~~g~ty~r~~I~~~~~----~~~---~~cP~~~~~ 283 (732)
-.||||++-+. + |++.+|||.||+.||..|+. .|. -+||.|+-+
T Consensus 6 ~~C~IC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~ 59 (94)
T d1wima_ 6 SGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACP 59 (94)
T ss_dssp CCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCS
T ss_pred CcCccCCCcccCCceEEECCCCCEeCCcCHHHHHHHHHhcCCccccCCcCCCCC
Confidence 46999999885 3 45568999999999999995 232 259987543
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.85 E-value=0.012 Score=60.82 Aligned_cols=259 Identities=13% Similarity=0.067 Sum_probs=159.2
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccC--CHHHHHHHHHHHHHhhcC-Cch-HHH
Q 004761 448 KKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSE--AQLTQEHAVTALLNLSIN-DEN-KAM 523 (732)
Q Consensus 448 ~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~--~~~v~~~A~~~L~nLs~~-~~~-k~~ 523 (732)
-.+++.+-+++.+.+..|-..|..+...++ .+++..|...+.+. +..++..|...|.|.-.. ... ...
T Consensus 3 ~~il~~~~s~d~~~r~~A~~~L~~~~~~~~--------~~~~~~l~~il~~~~~~~~~R~~A~i~lk~~l~~~~~~~~~~ 74 (458)
T d1ibrb_ 3 ITILEKTVSPDRLELEAAQKFLERAAVENL--------PTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQ 74 (458)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHH
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHHHhcCc--------hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccCchhhhH
Confidence 356677778899999999999999886542 24567777777543 467888888788776432 211 111
Q ss_pred HH----------HcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHH---hcchHHHHHHhhcCC--CHHHHHH
Q 004761 524 IA----------EAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIG---RSGAVKALVDLLGSG--TLRGRKD 588 (732)
Q Consensus 524 i~----------~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~---~~g~i~~Lv~lL~~~--~~~~~~~ 588 (732)
.. .......++..+.+.+.. +..++.++..++.. .+. ..+.++.++..+.+. +...+..
T Consensus 75 ~~~~~~~l~~~~~~~i~~~ll~~~~~~~~~-~~~~~~~~~~i~~~-----~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 148 (458)
T d1ibrb_ 75 YQQRWLAIDANARREVKNYVLQTLGTETYR-PSSASQCVAGIACA-----EIPVNQWPELIPQLVANVTNPNSTEHMKES 148 (458)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHHHTTCCCSS-SCSHHHHHHHHHHH-----HGGGTCCTTHHHHHHHHHHCTTCCHHHHHH
T ss_pred HhhhhccCCHHHHHHHHHHHHhccCCCcHH-HHHHHHHHHHHHHH-----hCCcccCcchhHHHHHHHHhhcchHHHHHH
Confidence 10 112334455666555432 22334444433321 111 126788999888653 4677778
Q ss_pred HHHHHHHhccCc-hhHHHHHhhchHHHHHHhc---CCChHHHHHHHHHHHHHhCChhhHH--HHHHcCcHHHHHHHHhcC
Q 004761 589 AATALFNLSIFH-ENKARIIQAGAVKHLVDLM---DPSTGMVDKAVALLANLSTVGEGRL--AIAREGGIPSLVEVVESG 662 (732)
Q Consensus 589 Al~aL~nLs~~~-~n~~~lv~~G~V~~Ll~lL---~~~~~l~e~al~iL~nLa~~~~~r~--~i~~~~~I~~Lv~lL~~~ 662 (732)
++.++..++..- .....-....+++.++..+ +.+..+...++.++.++........ ........+.+...+.+.
T Consensus 149 ~l~~l~~~~~~~~~~~~~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 228 (458)
T d1ibrb_ 149 TLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCP 228 (458)
T ss_dssp HHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHhhccchhhhhhHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhHhhHHHHhcCC
Confidence 888888776532 2222222244667777777 3456788899999998876543221 112223456677777888
Q ss_pred CHHHHHHHHHHHHHHhcCChHhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHhh
Q 004761 663 SQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFR 720 (732)
Q Consensus 663 s~~~~e~A~~~L~~L~~~~~~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~ 720 (732)
+++.+..++.+|..++...+......+.....+.+.....+.++..+..|...+..+.
T Consensus 229 ~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~ 286 (458)
T d1ibrb_ 229 DTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVC 286 (458)
T ss_dssp SHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 9999999999999998755543222223333445566667777888888887776653
|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.80 E-value=0.02 Score=64.44 Aligned_cols=274 Identities=12% Similarity=0.066 Sum_probs=162.7
Q ss_pred cCchHHHHHHHhcCCC--HHHHHHHHHHHHHHhccChhhHHHHHh--cCCHHHHHHhhccC--CHHHHHHHHHHHHHhhc
Q 004761 443 TTPYVKKLIEDLNSTS--NEIQASAAAELRLLAKHNMENRMIIGN--CGAIPPLLSLLYSE--AQLTQEHAVTALLNLSI 516 (732)
Q Consensus 443 ~~~~i~~Lv~~L~s~~--~~~~~~Al~~L~~La~~~~~~r~~i~~--~G~I~~Lv~lL~s~--~~~v~~~A~~~L~nLs~ 516 (732)
|.+.++.|++.+.+++ ...+..++.+|..+++.-.. ..+.. ...++.++..+.+. +..++..|+.++.+...
T Consensus 126 Wpeli~~L~~~l~~~~~~~~~~~~~l~~l~~i~~~~~~--~~~~~~~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~ 203 (876)
T d1qgra_ 126 WPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDP--EQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLE 203 (876)
T ss_dssp CTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCH--HHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGG
T ss_pred cHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHCCH--HHHHHHHHHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHH
Confidence 5678999999987654 56777888898888753211 11111 24567777777643 57888899988877653
Q ss_pred CCchH--HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccC-chhHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHH
Q 004761 517 NDENK--AMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVL-EEYKAKIGRSGAVKALVDLLGSGTLRGRKDAATAL 593 (732)
Q Consensus 517 ~~~~k--~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~-~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL 593 (732)
..... ......-.++.+...+..++++++..+..+|..+... .+.-.........+.+...+.+....+...++..+
T Consensus 204 ~~~~~~~~~~~~~~i~~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 283 (876)
T d1qgra_ 204 FTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFW 283 (876)
T ss_dssp GCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred HhhhhhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 22110 0111112356666777888899999999999887642 22111112223455566667777788887777776
Q ss_pred HHhccCchh---------------------HHHHHhhchHHHHHHhc-C-------CChHHHHHHHHHHHHHhCChhhHH
Q 004761 594 FNLSIFHEN---------------------KARIIQAGAVKHLVDLM-D-------PSTGMVDKAVALLANLSTVGEGRL 644 (732)
Q Consensus 594 ~nLs~~~~n---------------------~~~lv~~G~V~~Ll~lL-~-------~~~~l~e~al~iL~nLa~~~~~r~ 644 (732)
..++..... -........++.+...+ . ....+...|..++..++.....
T Consensus 284 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~-- 361 (876)
T d1qgra_ 284 SNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED-- 361 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG--
T ss_pred HHHHHHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHhcccccccccchHHHHHHHHHHHHHHHhhh--
Confidence 666542110 01111223344444444 1 1123455555555555432211
Q ss_pred HHHHcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC-hHhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHhhcc
Q 004761 645 AIAREGGIPSLVEVVESGSQRGKENAASILLQLCLHS-PKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFRNQ 722 (732)
Q Consensus 645 ~i~~~~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~-~~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~~ 722 (732)
.+.. ..++.+.+.+.+.+...++.++..+..+..+. ....... -..+++.+...+.+.+++++..|..++..+.+.
T Consensus 362 ~~~~-~~~~~i~~~l~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~l~~~l~d~~~~vr~~a~~~l~~~~~~ 438 (876)
T d1qgra_ 362 DIVP-HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPL-VIQAMPTLIELMKDPSVVVRDTAAWTVGRICEL 438 (876)
T ss_dssp GGHH-HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHH-HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred hhhh-hhHHHHHHhhccchHHHHHHHHHHHHhhhhhhhHHHHHHH-HHHHHHHHHHhhcCCccHHHHHHHHHHHHHHHH
Confidence 0110 12344455566778888998888888877643 2322222 234688899999999999999999988877654
|
| >d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: MTH187 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=96.69 E-value=0.0028 Score=53.26 Aligned_cols=106 Identities=22% Similarity=0.194 Sum_probs=81.2
Q ss_pred cCCHHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHHhcchHHHHHHh
Q 004761 498 SEAQLTQEHAVTALLNLSINDENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIGRSGAVKALVDL 577 (732)
Q Consensus 498 s~~~~v~~~A~~~L~nLs~~~~~k~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~l 577 (732)
++|+.++..|+.+|..+. ...+++|+..|.++++.+|..|+.+|.++.. .++++.|+.+
T Consensus 3 D~~~~VR~~A~~aL~~~~-----------~~~~~~L~~~l~d~~~~vR~~a~~~L~~~~~----------~~~~~~L~~~ 61 (111)
T d1te4a_ 3 DENKWVRRDVSTALSRMG-----------DEAFEPLLESLSNEDWRIRGAAAWIIGNFQD----------ERAVEPLIKL 61 (111)
T ss_dssp SSCCCSSSSCCSSTTSCS-----------STTHHHHHHGGGCSCHHHHHHHHHHHGGGCS----------HHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHhC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhcch----------hhhHHHHHhh
Confidence 344455555555554332 2468889999999999999999999876542 3578999999
Q ss_pred hcCCCHHHHHHHHHHHHHhccCchhHHHHHhhchHHHHHHhc-CCChHHHHHHHHHHH
Q 004761 578 LGSGTLRGRKDAATALFNLSIFHENKARIIQAGAVKHLVDLM-DPSTGMVDKAVALLA 634 (732)
Q Consensus 578 L~~~~~~~~~~Al~aL~nLs~~~~n~~~lv~~G~V~~Ll~lL-~~~~~l~e~al~iL~ 634 (732)
|++.++.++..|+.+|..+. ..++++.|..++ +++..++..|+.+|.
T Consensus 62 l~d~~~~VR~~a~~aL~~i~----------~~~~~~~L~~ll~d~~~~vr~~A~~aL~ 109 (111)
T d1te4a_ 62 LEDDSGFVRSGAARSLEQIG----------GERVRAAMEKLAETGTGFARKVAVNYLE 109 (111)
T ss_dssp HHHCCTHHHHHHHHHHHHHC----------SHHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred hccchhHHHHHHHHHHHHhC----------ccchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 99999999999999998763 245788888888 788888888887764
|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.44 E-value=0.031 Score=62.82 Aligned_cols=258 Identities=14% Similarity=0.086 Sum_probs=163.6
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhccC--CHHHHHHHHHHHHHhhcC-Cch-HHH
Q 004761 448 KKLIEDLNSTSNEIQASAAAELRLLAKHNMENRMIIGNCGAIPPLLSLLYSE--AQLTQEHAVTALLNLSIN-DEN-KAM 523 (732)
Q Consensus 448 ~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~G~I~~Lv~lL~s~--~~~v~~~A~~~L~nLs~~-~~~-k~~ 523 (732)
-.+++..-+++.+.+..|-..|..+.+.++ .|++..|...+.+. +..++..|+-.|.|.-.. ... +..
T Consensus 4 ~~~L~~~~s~d~~~r~~Ae~~L~~~~~~~~--------~~f~~~L~~i~~~~~~~~~iR~~A~i~lKn~i~~~~~~~~~~ 75 (876)
T d1qgra_ 4 ITILEKTVSPDRLELEAAQKFLERAAVENL--------PTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQ 75 (876)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHH
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHHHhcCh--------hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccchhhh
Confidence 445666668888999999999988875532 26777888888654 477888888888886432 111 111
Q ss_pred H----------HHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCchhHHHHH---hcchHHHHHHhhcCC--CHHHHHH
Q 004761 524 I----------AEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEEYKAKIG---RSGAVKALVDLLGSG--TLRGRKD 588 (732)
Q Consensus 524 i----------~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~---~~g~i~~Lv~lL~~~--~~~~~~~ 588 (732)
. .....-..++..|.+.+. .+..++.++..++..+ +. ..+.++.|+..+.+. +...+..
T Consensus 76 ~~~~~~~i~~~~k~~ik~~ll~~l~~~~~-~~~~~a~~i~~i~~~~-----~p~~~Wpeli~~L~~~l~~~~~~~~~~~~ 149 (876)
T d1qgra_ 76 YQQRWLAIDANARREVKNYVLHTLGTETY-RPSSASQCVAGIACAE-----IPVNQWPELIPQLVANVTNPNSTEHMKES 149 (876)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHHHTTTCCS-SSCHHHHHHHHHHHHH-----GGGTCCTTHHHHHHHHHHCTTCCHHHHHH
T ss_pred hhcccccCCHHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHH-----CCccccHHHHHHHHHHhcCCCCcHHHHHH
Confidence 0 012233456677766553 3445666666665321 11 236889999988654 4677888
Q ss_pred HHHHHHHhccC-chhHHHHHhhchHHHHHHhc---CCChHHHHHHHHHHHHHhCChhhHH--HHHHcCcHHHHHHHHhcC
Q 004761 589 AATALFNLSIF-HENKARIIQAGAVKHLVDLM---DPSTGMVDKAVALLANLSTVGEGRL--AIAREGGIPSLVEVVESG 662 (732)
Q Consensus 589 Al~aL~nLs~~-~~n~~~lv~~G~V~~Ll~lL---~~~~~l~e~al~iL~nLa~~~~~r~--~i~~~~~I~~Lv~lL~~~ 662 (732)
++.+|..++.. ......-.-..+++.++..+ +.+..+...++.++.+......... .....-.+..+...+...
T Consensus 150 ~l~~l~~i~~~~~~~~~~~~~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~ 229 (876)
T d1qgra_ 150 TLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCP 229 (876)
T ss_dssp HHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCC
Confidence 99999988752 22111111235677777777 3356778888888887654322111 111112355666677788
Q ss_pred CHHHHHHHHHHHHHHhcCChHhHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHh
Q 004761 663 SQRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHF 719 (732)
Q Consensus 663 s~~~~e~A~~~L~~L~~~~~~~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l 719 (732)
++..+..|+.+|..++...++.....+...+.+.+.....+..+.++..|...+..+
T Consensus 230 ~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i 286 (876)
T d1qgra_ 230 DTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNV 286 (876)
T ss_dssp SHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 899999999999999886666555555555666677777777777777776655544
|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.43 E-value=0.052 Score=60.63 Aligned_cols=275 Identities=10% Similarity=0.051 Sum_probs=159.0
Q ss_pred cCchHHHHHHHhcCCC-HHHHHHHHHHHHHHhccChhhHHHHHh--cCCHHHHHHhhc--cCCHHHHHHHHHHHHHhhcC
Q 004761 443 TTPYVKKLIEDLNSTS-NEIQASAAAELRLLAKHNMENRMIIGN--CGAIPPLLSLLY--SEAQLTQEHAVTALLNLSIN 517 (732)
Q Consensus 443 ~~~~i~~Lv~~L~s~~-~~~~~~Al~~L~~La~~~~~~r~~i~~--~G~I~~Lv~lL~--s~~~~v~~~A~~~L~nLs~~ 517 (732)
|...++.|++.+.+.+ ...+..|+..|..++.........+.. ...+..++..+. ..+..++..|+.++.++...
T Consensus 132 wpeli~~L~~~~~s~~~~~~~~~al~~l~~i~e~~~~~~~~~~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~ 211 (861)
T d2bpta1 132 WPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIF 211 (861)
T ss_dssp CHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGG
T ss_pred hHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHH
Confidence 4567899999998765 456677888888887543211110110 012223333333 34688999999999887643
Q ss_pred Cc-h-HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCch--hHHHHHhcchHHHHHHhhcCCCHHHHHHHHHHH
Q 004761 518 DE-N-KAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLEE--YKAKIGRSGAVKALVDLLGSGTLRGRKDAATAL 593 (732)
Q Consensus 518 ~~-~-k~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~--~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Al~aL 593 (732)
-. + .........++.+...++.++++.+..+..++..+..... ....+.. -....+....++.++..+..++..+
T Consensus 212 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~-~l~~l~~~~~~~~~~~v~~~~~~~l 290 (861)
T d2bpta1 212 IKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQ-ALYALTIATMKSPNDKVASMTVEFW 290 (861)
T ss_dssp CHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHH-THHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred HhHhHHhhhhhhHHHHhHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCccHHHHHHHHHHH
Confidence 21 1 1111123356777888889999999999999988764211 1111111 1222233445567788888888888
Q ss_pred HHhccCchhHH-----------------HHHhhchHHHHHHhc-C-------CChHHHHHHHHHHHHHhCChhhHHHHHH
Q 004761 594 FNLSIFHENKA-----------------RIIQAGAVKHLVDLM-D-------PSTGMVDKAVALLANLSTVGEGRLAIAR 648 (732)
Q Consensus 594 ~nLs~~~~n~~-----------------~lv~~G~V~~Ll~lL-~-------~~~~l~e~al~iL~nLa~~~~~r~~i~~ 648 (732)
..++....... .-.-...++.+...+ . .+......+..+|..++...... +..
T Consensus 291 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~ 368 (861)
T d2bpta1 291 STICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNH--ILE 368 (861)
T ss_dssp HHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGG--GHH
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHhhcchh--hhh
Confidence 77754321110 111123455566655 1 12234445555555554322110 000
Q ss_pred cCcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChH-hHHHHHhCCCHHHHHHchhcCChHHHHHHHHHHHHhhcc
Q 004761 649 EGGIPSLVEVVESGSQRGKENAASILLQLCLHSPK-FCTLVLQEGAVPPLVGLSQSGTPRAKEKAQQLLSHFRNQ 722 (732)
Q Consensus 649 ~~~I~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~-~~~~v~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~~ 722 (732)
-..+.+...+.+.+...++.|+.++..+...... ...... ..+++.+...+.+.++.++..|..++..+...
T Consensus 369 -~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~l-~~~l~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 441 (861)
T d2bpta1 369 -PVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYV-HQALPSILNLMNDQSLQVKETTAWCIGRIADS 441 (861)
T ss_dssp -HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred -hhcchhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhHHHHH-HHHHHHHHHHhcCcchhhhhHHHHHHHHHHHH
Confidence 0123333445667888899999999888875332 222222 23688999999999999999999988877554
|
| >d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Mo25 protein domain: Mo25 protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.75 E-value=0.45 Score=46.67 Aligned_cols=196 Identities=13% Similarity=0.078 Sum_probs=146.5
Q ss_pred CchHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHH----HHHhc-CCHHHHHHhhccCCHHHHHHHHHHHHHhhcCC
Q 004761 444 TPYVKKLIEDLNSTSNEIQASAAAELRLLAKHNMENRM----IIGNC-GAIPPLLSLLYSEAQLTQEHAVTALLNLSIND 518 (732)
Q Consensus 444 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~----~i~~~-G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~ 518 (732)
.+.+..|+..|..-+.+.+..+......+.+.....|. .+... ..+..|+... +++++--.+-..|......+
T Consensus 68 ~d~l~~Li~~L~~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~~eil~~L~~gy--e~~eiAl~~G~mLREcik~e 145 (330)
T d1upka_ 68 SGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGY--ESPEIALNCGIMLRECIRHE 145 (330)
T ss_dssp HSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGG--GSTTTHHHHHHHHHHHHTSH
T ss_pred hChHHHHHHhCCCCCCchhhhHHHHHHHHhhcCCCCCCccHHHHHcCHHHHHHHHhhc--CCcchhhhhhHHHHHHHhhH
Confidence 45677888888888889999999988888876654442 23321 2333333333 34555566667777777777
Q ss_pred chHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccCc-hhH-HHHHhc--chHHHHHHhhcCCCHHHHHHHHHHHH
Q 004761 519 ENKAMIAEAGAIEPLIHVLKSGNGGAKENSAAALFSLSVLE-EYK-AKIGRS--GAVKALVDLLGSGTLRGRKDAATALF 594 (732)
Q Consensus 519 ~~k~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~-~~k-~~i~~~--g~i~~Lv~lL~~~~~~~~~~Al~aL~ 594 (732)
.-...+.....+..+...+..++-++...|..++..|.... ... +.+... ..+.....+|.+++--+++.+++.|.
T Consensus 146 ~lak~iL~s~~f~~fF~yv~~~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s~NYVtrRqSlKLLg 225 (330)
T d1upka_ 146 PLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLG 225 (330)
T ss_dssp HHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred HHHHHHHccHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 77777888888999999999999999999999998876533 222 222222 46677778999999999999999999
Q ss_pred HhccCchhHHHHHh----hchHHHHHHhc-CCChHHHHHHHHHHHHHhCChh
Q 004761 595 NLSIFHENKARIIQ----AGAVKHLVDLM-DPSTGMVDKAVALLANLSTVGE 641 (732)
Q Consensus 595 nLs~~~~n~~~lv~----~G~V~~Ll~lL-~~~~~l~e~al~iL~nLa~~~~ 641 (732)
.+-..+.|...|.. ..-+..++.+| +.+..++-.|..++...+.+|.
T Consensus 226 elLldr~N~~vm~~Yvs~~~nLkl~M~LLrd~sk~Iq~EAFhVFKvFVANpn 277 (330)
T d1upka_ 226 ELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPN 277 (330)
T ss_dssp HHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSS
T ss_pred HHHhhhhHHHHHHHHhCCHHHHHHHHHHhcCchhhHHHHhhhHhhhhhcCCC
Confidence 99999988876543 45778888888 8889999999999998877654
|
| >d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Leucine-rich repeat variant domain: Leucine-rich repeat variant species: Azotobacter vinelandii [TaxId: 354]
Probab=89.34 E-value=0.11 Score=49.52 Aligned_cols=47 Identities=13% Similarity=0.155 Sum_probs=30.8
Q ss_pred CCHHHHHHhhccCCHHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHH
Q 004761 487 GAIPPLLSLLYSEAQLTQEHAVTALLNLSINDENKAMIAEAGAIEPLIHVLKSGNGGAKENSAA 550 (732)
Q Consensus 487 G~I~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~~k~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~ 550 (732)
-.+..|..+++.+++.++..|+..|. .+.|..++..++.+++..++.
T Consensus 66 a~~~~L~~Ll~D~d~~VR~~AA~~Lp-----------------~~~L~~L~~D~d~~VR~~aa~ 112 (233)
T d1lrva_ 66 SPVEALTPLIRDSDEVVRRAVAYRLP-----------------REQLSALMFDEDREVRITVAD 112 (233)
T ss_dssp SCGGGGGGGTTCSSHHHHHHHHTTSC-----------------SGGGGGTTTCSCHHHHHHHHH
T ss_pred CCHHHHHHHhcCCCHHHHHHHHHHcC-----------------HHHHHHHhcCCChhHHHHHHh
Confidence 45667888888999999988875431 133445556666666655553
|
| >d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Leucine-rich repeat variant domain: Leucine-rich repeat variant species: Azotobacter vinelandii [TaxId: 354]
Probab=86.43 E-value=0.12 Score=49.10 Aligned_cols=104 Identities=14% Similarity=0.164 Sum_probs=53.8
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHH-----HHHhc-cChhhHHHHHhcCCHHHHHHhhccCCHHHHHHHHHH-----HHHhh
Q 004761 447 VKKLIEDLNSTSNEIQASAAAEL-----RLLAK-HNMENRMIIGNCGAIPPLLSLLYSEAQLTQEHAVTA-----LLNLS 515 (732)
Q Consensus 447 i~~Lv~~L~s~~~~~~~~Al~~L-----~~La~-~~~~~r~~i~~~G~I~~Lv~lL~s~~~~v~~~A~~~-----L~nLs 515 (732)
+..|+.+++.++++++..|++.| ..+.. .+...|......-..+.|..++.+++..++..+... |..+.
T Consensus 68 ~~~L~~Ll~D~d~~VR~~AA~~Lp~~~L~~L~~D~d~~VR~~aa~~l~~~~L~~Ll~D~d~~VR~~aa~~~~~~~L~~L~ 147 (233)
T d1lrva_ 68 VEALTPLIRDSDEVVRRAVAYRLPREQLSALMFDEDREVRITVADRLPLEQLEQMAADRDYLVRAYVVQRIPPGRLFRFM 147 (233)
T ss_dssp GGGGGGGTTCSSHHHHHHHHTTSCSGGGGGTTTCSCHHHHHHHHHHSCTGGGGGGTTCSSHHHHHHHHHHSCGGGGGGTT
T ss_pred HHHHHHHhcCCCHHHHHHHHHHcCHHHHHHHhcCCChhHHHHHHhccCHHHHHHHhcCCCHHHHHHHHhccchhHHHHHh
Confidence 44566777788888888777543 12222 222344444444345566666666677766665543 21222
Q ss_pred cCCc--hHHHHHHcCCHHHHHHHHcCCCHHHHHHHHH
Q 004761 516 INDE--NKAMIAEAGAIEPLIHVLKSGNGGAKENSAA 550 (732)
Q Consensus 516 ~~~~--~k~~i~~~g~l~~Lv~lL~~~~~e~~~~Aa~ 550 (732)
.+++ -+..++..-..+.|..++++.++.++..++.
T Consensus 148 ~D~d~~VR~~aA~~~~~~~L~~l~~D~d~~VR~~aa~ 184 (233)
T d1lrva_ 148 RDEDRQVRKLVAKRLPEESLGLMTQDPEPEVRRIVAS 184 (233)
T ss_dssp TCSCHHHHHHHHHHSCGGGGGGSTTCSSHHHHHHHHH
T ss_pred cCCCHHHHHHHHHhcCHHHHHHHccCCCHHHHHHHHH
Confidence 2221 2333433334444555555556666655554
|
| >d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Diap1 N-terninal region-like domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=84.92 E-value=17 Score=35.57 Aligned_cols=109 Identities=17% Similarity=0.159 Sum_probs=69.3
Q ss_pred HHHHHhcCCC-HHHHHHHHHHHHHHhccChhh-HHHHHhcCCHHHHHHhhcc-----------CCHHHHHHHHHHHHHhh
Q 004761 449 KLIEDLNSTS-NEIQASAAAELRLLAKHNMEN-RMIIGNCGAIPPLLSLLYS-----------EAQLTQEHAVTALLNLS 515 (732)
Q Consensus 449 ~Lv~~L~s~~-~~~~~~Al~~L~~La~~~~~~-r~~i~~~G~I~~Lv~lL~s-----------~~~~v~~~A~~~L~nLs 515 (732)
..|..|+++. .+.....+.-|+---+.++-. -..+ ..+|+..|+.+|.. .+...+..++.+|..+.
T Consensus 6 ~yv~~l~~~~~~~~~~~~L~sL~v~Lrt~~~sWv~~F-~~~G~~~L~~~L~~l~~~~~~~~~~~d~~~e~e~l~CLkalm 84 (343)
T d2bnxa1 6 MYIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM 84 (343)
T ss_dssp HHHHHHTSCCCHHHHHHHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCccHHHHHHHHHHHHHhcCCchHHHHH-HhccHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHh
Confidence 3455555443 232233344443323333332 2333 45678888887741 13557778888888887
Q ss_pred cCCchHHHHH-HcCCHHHHHHHHcCCCHHHHHHHHHHHHHhccC
Q 004761 516 INDENKAMIA-EAGAIEPLIHVLKSGNGGAKENSAAALFSLSVL 558 (732)
Q Consensus 516 ~~~~~k~~i~-~~g~l~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~ 558 (732)
.+..+...+. ..+++..|+..|.+....++..|+-+|..++..
T Consensus 85 n~~~G~~~vl~~~~~i~~l~~~L~s~~~~tr~~a~elL~~lc~~ 128 (343)
T d2bnxa1 85 NNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCIL 128 (343)
T ss_dssp SSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTC
T ss_pred ccHHHHHHHHcChHHHHHHHHccCCCchHHHHHHHHHHHHHHhc
Confidence 7666655555 568899999999888899999999998888753
|
| >d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Diap1 N-terninal region-like domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=80.16 E-value=13 Score=36.33 Aligned_cols=140 Identities=16% Similarity=0.158 Sum_probs=93.3
Q ss_pred chHHHHHHhhc----CC-------CHHHHHHHHHHHHHhccCchhHHHHHh-hchHHHHHHhc-CCChHHHHHHHHHHHH
Q 004761 569 GAVKALVDLLG----SG-------TLRGRKDAATALFNLSIFHENKARIIQ-AGAVKHLVDLM-DPSTGMVDKAVALLAN 635 (732)
Q Consensus 569 g~i~~Lv~lL~----~~-------~~~~~~~Al~aL~nLs~~~~n~~~lv~-~G~V~~Ll~lL-~~~~~l~e~al~iL~n 635 (732)
+|+..|+.+|. .+ +......+++||..|..+..+...++. .+++..++..| ++...+...|+.+|..
T Consensus 45 ~G~~~L~~~L~~l~~~~~~~~~~~d~~~e~e~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~tr~~a~elL~~ 124 (343)
T d2bnxa1 45 EGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSA 124 (343)
T ss_dssp HHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHhccHHHHHHHHcChHHHHHHHHccCCCchHHHHHHHHHHHH
Confidence 45566666653 11 245667789999999888877776665 78899999988 7788889999999999
Q ss_pred HhCCh---hhHHHHH----------HcCcHHHHHHHHhcC-CHHHHHHHHHHHHHHhcCChH------hHHHHHhCCCHH
Q 004761 636 LSTVG---EGRLAIA----------REGGIPSLVEVVESG-SQRGKENAASILLQLCLHSPK------FCTLVLQEGAVP 695 (732)
Q Consensus 636 La~~~---~~r~~i~----------~~~~I~~Lv~lL~~~-s~~~~e~A~~~L~~L~~~~~~------~~~~v~~~G~i~ 695 (732)
+|..+ +|...+. +.+-...++..++.+ +.+.+-.++..+-.++.+.++ .+..+...|+.+
T Consensus 125 lc~~~~~~~g~~~vL~Al~~~~~~~e~~RF~~lv~~l~~~~~~ey~~a~m~lIN~li~~~~dl~~R~~lR~E~~~~Gl~~ 204 (343)
T d2bnxa1 125 LCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQ 204 (343)
T ss_dssp HHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHH
T ss_pred HHhccCCCchHHHHHHHHHHHHHhcCCCcHHHHHHHHhccccHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHCChHH
Confidence 98642 3433332 233467788877664 455555555555556654332 445666788877
Q ss_pred HHHHchhcCChHH
Q 004761 696 PLVGLSQSGTPRA 708 (732)
Q Consensus 696 ~L~~Ll~~g~~~~ 708 (732)
.+-.+-..+++..
T Consensus 205 il~~l~~~~~~~L 217 (343)
T d2bnxa1 205 VLQELREIENEDM 217 (343)
T ss_dssp HHHHHTTCCCHHH
T ss_pred HHHHHHccCChHH
Confidence 7776665556544
|