Citrus Sinensis ID: 004766
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 732 | 2.2.26 [Sep-21-2011] | |||||||
| P48147 | 710 | Prolyl endopeptidase OS=H | yes | no | 0.963 | 0.992 | 0.544 | 0.0 | |
| O70196 | 710 | Prolyl endopeptidase OS=R | yes | no | 0.964 | 0.994 | 0.547 | 0.0 | |
| Q9QUR6 | 710 | Prolyl endopeptidase OS=M | yes | no | 0.964 | 0.994 | 0.544 | 0.0 | |
| P23687 | 710 | Prolyl endopeptidase OS=S | yes | no | 0.963 | 0.992 | 0.544 | 0.0 | |
| Q9XTA2 | 710 | Prolyl endopeptidase OS=B | yes | no | 0.964 | 0.994 | 0.543 | 0.0 | |
| Q86AS5 | 760 | Prolyl endopeptidase OS=D | yes | no | 0.950 | 0.915 | 0.369 | 1e-136 | |
| Q06903 | 690 | Prolyl endopeptidase OS=A | no | no | 0.915 | 0.971 | 0.392 | 1e-133 | |
| P27028 | 705 | Prolyl endopeptidase OS=F | N/A | no | 0.915 | 0.950 | 0.379 | 1e-132 | |
| P27195 | 705 | Prolyl endopeptidase OS=E | N/A | no | 0.912 | 0.947 | 0.369 | 1e-128 | |
| P55577 | 726 | Uncharacterized peptidase | no | no | 0.422 | 0.425 | 0.339 | 6e-49 |
| >sp|P48147|PPCE_HUMAN Prolyl endopeptidase OS=Homo sapiens GN=PREP PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 840 bits (2170), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 394/724 (54%), Positives = 521/724 (71%), Gaps = 19/724 (2%)
Query: 10 SLQYPVARRDESVVDDYHGVKIVDPYRWLEDPDAEEVKDFVQKQVELTDSVLKNCDVRDK 69
SLQYP RDE+ V DYHG KI DPY WLEDPD+E+ K FV+ Q ++T L+ C +R
Sbjct: 3 SLQYPDVYRDETAVQDYHGHKICDPYAWLEDPDSEQTKAFVEAQNKITVPFLEQCPIRGL 62
Query: 70 LREKITKLFDSPRYDAPFKRGNKYFYFHNTGLQPQSVLYVQDSLDAKAKVLLDPNTLSDD 129
+E++T+L+D P+Y FK+G +YFYF+NTGLQ Q VLYVQDSL+ +A+V LDPN LSDD
Sbjct: 63 YKERMTELYDYPKYSCHFKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDD 122
Query: 130 GTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWFKFSSIAWTHDS 189
GT AL + SED +Y AY LS SGSDW TIK M+++ D L KFS +AWTHD
Sbjct: 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDG 182
Query: 190 KGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGH 249
KG FY+ YP ++GK GTET +NL+ + YYH LGT QSEDILC + P+ PK++
Sbjct: 183 KGMFYNSYPQ-QDGKS--DGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAE 239
Query: 250 VTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVI 309
+++DG+Y+++ I E CDPVN+++YCDL G+ G +L +VKLID F+ +Y+ +
Sbjct: 240 LSDDGRYVLLSIREGCDPVNRLWYCDLQQESSGIAG------ILKWVKLIDNFEGEYDYV 293
Query: 310 ANDDTVFTFLTNKDAPKYKIIRVDLKEPND--WFEVIPEAERDVLESATAVNLNQMIVSY 367
N+ TVFTF TN+ +P Y++I +D ++P + W ++PE E+DVLE V N +++ Y
Sbjct: 294 TNEGTVFTFKTNRQSPNYRVINIDFRDPEESKWKVLVPEHEKDVLEWIACVRSNFLVLCY 353
Query: 368 LSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLK 427
L DVK +LQ+ DL G+LL P+++GS+ S +++D+ +F FTSFL PGI+Y C+L
Sbjct: 354 LHDVKNILQLHDLTTGALLKTFPLDVGSIVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLT 413
Query: 428 TETPEMKIFRETIIPGFDRSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYG 487
E E ++FRE + G D S++ Q+F PSKDG TKIPMFIV KK IKLDGSHP LYG
Sbjct: 414 KEELEPRVFREVTVKGIDASDYQTVQIFYPSKDG-TKIPMFIVHKKGIKLDGSHPAFLYG 472
Query: 488 YGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFIS 547
YGGFNIS+TP++SVSR I +RH+G + +ANIRGGGEYGE WHKGG LA KQNCFDDF
Sbjct: 473 YGGFNISITPNYSVSRLIFVRHMGGILAVANIRGGGEYGETWHKGGILANKQNCFDDFQC 532
Query: 548 ASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIG 607
A+EYLI GYT ++L I GGSNGGLLV AC NQRPDLFGC +A VGVMDML++HK+TIG
Sbjct: 533 AAEYLIKEGYTSPKRLTINGGSNGGLLVAACANQRPDLFGCVIAQVGVMDMLKFHKYTIG 592
Query: 608 HAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLH 667
HAW +D+GCS+ ++ F WL+KYSPLHNV+ P + QYPS LLLTADHDDRVVPLH
Sbjct: 593 HAWTTDYGCSDSKQHFEWLVKYSPLHNVKLPEADD----IQYPSMLLLTADHDDRVVPLH 648
Query: 668 SLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLG 727
SLK +AT+QY++ S + Q+NP++ ++ KAGHG G PT K+I+E +D + F+A+ L
Sbjct: 649 SLKFIATLQYIVGRSRK---QSNPLLIHVDTKAGHGAGKPTAKVIEEVSDMFAFIARCLN 705
Query: 728 ASWV 731
W+
Sbjct: 706 VDWI 709
|
Cleaves peptide bonds on the C-terminal side of prolyl residues within peptides that are up to approximately 30 amino acids long. Homo sapiens (taxid: 9606) EC: 3EC: .EC: 4EC: .EC: 2EC: 1EC: .EC: 2EC: 6 |
| >sp|O70196|PPCE_RAT Prolyl endopeptidase OS=Rattus norvegicus GN=Prep PE=1 SV=1 | Back alignment and function description |
|---|
Score = 840 bits (2170), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 397/725 (54%), Positives = 524/725 (72%), Gaps = 19/725 (2%)
Query: 10 SLQYPVARRDESVVDDYHGVKIVDPYRWLEDPDAEEVKDFVQKQVELTDSVLKNCDVRDK 69
S QYP RDE+ V DYHG KI DPY WLEDPD+E+ K FV+ Q ++T L+ C +R
Sbjct: 3 SFQYPDVYRDETSVQDYHGHKICDPYAWLEDPDSEQTKAFVEAQNKITVPFLEQCPIRGL 62
Query: 70 LREKITKLFDSPRYDAPFKRGNKYFYFHNTGLQPQSVLYVQDSLDAKAKVLLDPNTLSDD 129
+E++T+L+D P+Y FK+G +YFYF+NTGLQ Q VLYVQDSL+ +A+V LDPNTLSDD
Sbjct: 63 YKERMTELYDYPKYSCHFKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNTLSDD 122
Query: 130 GTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWFKFSSIAWTHDS 189
GT AL + SED +Y AY LS SGSDW TIK M+++ D L KF+ +AWTHD
Sbjct: 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFTCMAWTHDG 182
Query: 190 KGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGH 249
KG FY+ YP ++GK GTET +NL+ + YH LGT QSED+LC + P+ PK++
Sbjct: 183 KGMFYNSYPQ-QDGKS--DGTETSTNLHQKLCYHVLGTDQSEDVLCAEFPDEPKWMGGAE 239
Query: 250 VTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVI 309
+++DG+Y+++ I E CDPVN+++YCDL G+ +G+L +VKLID F+ +Y+ I
Sbjct: 240 LSDDGRYVLLSIWEGCDPVNRLWYCDLQQGSNGI------NGILKWVKLIDNFEGEYDYI 293
Query: 310 ANDDTVFTFLTNKDAPKYKIIRVDLKEPND--WFEVIPEAERDVLESATAVNLNQMIVSY 367
N+ TVFTF TN+++P Y++I +D +P++ W ++PE E+DVLE V N +++ Y
Sbjct: 294 TNEGTVFTFKTNRNSPNYRLINIDFTDPDESKWKVLVPEHEKDVLEWVACVRSNFLVLCY 353
Query: 368 LSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLK 427
L +VK +LQ+ DL G+LL P+++GSV S R++DS +F FTSFL PG++Y C+L
Sbjct: 354 LRNVKNILQLHDLTTGALLKTFPLDVGSVVGYSGRKKDSEIFYQFTSFLSPGVIYHCDLT 413
Query: 428 TETPEMKIFRETIIPGFDRSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYG 487
E E ++FRE + G D S++ QVF PSKDG TKIPMFIV KK IKLDGSHP LYG
Sbjct: 414 REELEPRVFREVTVKGIDASDYQTIQVFYPSKDG-TKIPMFIVHKKGIKLDGSHPAFLYG 472
Query: 488 YGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFIS 547
YGGFNIS+TP++SVSR I +RH+G V +ANIRGGGEYGE WHKGG LA KQNCFDDF
Sbjct: 473 YGGFNISITPNYSVSRLIFVRHMGGVLAVANIRGGGEYGETWHKGGILANKQNCFDDFQC 532
Query: 548 ASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIG 607
A+EYLI GYT S++L I GGSNGGLLV AC NQRPDLFGC +A VGVMDML++HKFTIG
Sbjct: 533 AAEYLIKEGYTTSKRLTINGGSNGGLLVAACANQRPDLFGCVIAQVGVMDMLKFHKFTIG 592
Query: 608 HAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLH 667
HAW +D+GCS+ ++ F WL+KYSPLHNV+ P + QYPS LLLTADHDDRVVPLH
Sbjct: 593 HAWTTDYGCSDSKQHFEWLLKYSPLHNVKLPEADD----IQYPSMLLLTADHDDRVVPLH 648
Query: 668 SLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLG 727
SLK +AT+QY++ S + Q+NP++ ++ KAGHG G PT K+I+E +D + F+A+ L
Sbjct: 649 SLKFIATLQYIVGRSRK---QSNPLLIHVDTKAGHGPGKPTAKVIEEVSDMFAFIARCLN 705
Query: 728 ASWVE 732
W++
Sbjct: 706 IEWIQ 710
|
Cleaves peptide bonds on the C-terminal side of prolyl residues within peptides that are up to approximately 30 amino acids long. Has high activity on the succinyl- (suc-) peptide-4-methylcoumaryl-7-amide (MCA) substrates suc-Gly-Pro-Leu-Gly-Pro-MCA, suc-Gly-Pro-MCA and suc-Ala-Ala-Ala-MCA. Rattus norvegicus (taxid: 10116) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 2 EC: 6 |
| >sp|Q9QUR6|PPCE_MOUSE Prolyl endopeptidase OS=Mus musculus GN=Prep PE=2 SV=1 | Back alignment and function description |
|---|
Score = 838 bits (2166), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 395/725 (54%), Positives = 522/725 (72%), Gaps = 19/725 (2%)
Query: 10 SLQYPVARRDESVVDDYHGVKIVDPYRWLEDPDAEEVKDFVQKQVELTDSVLKNCDVRDK 69
S QYP RDE+ V +YHG KI DPY WLEDPD+E+ K FV+ Q ++T L+ C +R
Sbjct: 3 SFQYPDVYRDETSVQEYHGHKICDPYSWLEDPDSEQTKAFVEAQNKITVPFLEQCPIRGL 62
Query: 70 LREKITKLFDSPRYDAPFKRGNKYFYFHNTGLQPQSVLYVQDSLDAKAKVLLDPNTLSDD 129
+E++T+L+D P+Y FK+G +YFYF+NTGLQ Q VLYVQDSL+ +A+V LDPNTLSDD
Sbjct: 63 YKERMTELYDYPKYSCHFKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNTLSDD 122
Query: 130 GTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWFKFSSIAWTHDS 189
GT AL + SED +Y AY LS SGSDW TIK M+++ D L KF+ +AWTHD
Sbjct: 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFTCMAWTHDG 182
Query: 190 KGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGH 249
KG FY+ YP ++GK GTET +NL+ + YH LGT QSEDILC + P+ PK++
Sbjct: 183 KGMFYNSYPQ-QDGKS--DGTETSTNLHQKLCYHVLGTDQSEDILCAEFPDEPKWMGGAE 239
Query: 250 VTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVI 309
+++DG+Y+++ I E CDPVN+++YCDL P G+ G +L +VKLID F+ +Y+ +
Sbjct: 240 LSDDGRYVLLSIWEGCDPVNRLWYCDLQQEPNGITG------ILKWVKLIDNFEGEYDYV 293
Query: 310 ANDDTVFTFLTNKDAPKYKIIRVDLKEPND--WFEVIPEAERDVLESATAVNLNQMIVSY 367
N+ TVFTF TN+++P Y++I +D +P++ W ++PE E+DVLE V N +++ Y
Sbjct: 294 TNEGTVFTFKTNRNSPNYRLINIDFTDPDESKWKVLVPEHEKDVLEWVACVRSNFLVLCY 353
Query: 368 LSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLK 427
L DVK +LQ+ DL G+LL P+++GSV S R++DS +F FTSFL PG++Y C+L
Sbjct: 354 LHDVKNILQLHDLTTGALLKTFPLDVGSVVGYSGRKKDSEIFYQFTSFLSPGVIYHCDLT 413
Query: 428 TETPEMKIFRETIIPGFDRSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYG 487
E E +FRE + G D +++ Q+F PSKDG TKIPMFIV KK IKLDGSHP LYG
Sbjct: 414 KEELEPMVFREVTVKGIDAADYQTIQIFYPSKDG-TKIPMFIVHKKGIKLDGSHPAFLYG 472
Query: 488 YGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFIS 547
YGGFNIS+TP++SVSR I +RH+G V +ANIRGGGEYGE WHKGG LA KQNCFDDF
Sbjct: 473 YGGFNISITPNYSVSRLIFVRHMGGVLAVANIRGGGEYGETWHKGGILANKQNCFDDFQC 532
Query: 548 ASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIG 607
A+EYLI GYT ++L I GGSNGGLLV AC NQRPDLFGC +A VGVMDML++HKFTIG
Sbjct: 533 AAEYLIKEGYTSPKRLTINGGSNGGLLVAACANQRPDLFGCVIAQVGVMDMLKFHKFTIG 592
Query: 608 HAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLH 667
HAW +D+GCS+ ++ F WL+KYSPLHNV+ P + QYPS LLLTADHDDRVVPLH
Sbjct: 593 HAWTTDYGCSDTKQHFEWLLKYSPLHNVKLPEADD----IQYPSMLLLTADHDDRVVPLH 648
Query: 668 SLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLG 727
SLK +AT+QY++ S + Q+NP++ ++ KAGHG G PT K+I+E +D + F+A+ L
Sbjct: 649 SLKFIATLQYIVGRSRK---QSNPLLIHVDTKAGHGAGKPTAKVIEEVSDMFAFIARCLN 705
Query: 728 ASWVE 732
W++
Sbjct: 706 IEWIQ 710
|
Cleaves peptide bonds on the C-terminal side of prolyl residues within peptides that are up to approximately 30 amino acids long. Mus musculus (taxid: 10090) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 2 EC: 6 |
| >sp|P23687|PPCE_PIG Prolyl endopeptidase OS=Sus scrofa GN=PREP PE=1 SV=1 | Back alignment and function description |
|---|
Score = 835 bits (2156), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 394/724 (54%), Positives = 516/724 (71%), Gaps = 19/724 (2%)
Query: 10 SLQYPVARRDESVVDDYHGVKIVDPYRWLEDPDAEEVKDFVQKQVELTDSVLKNCDVRDK 69
S QYP RDE+ + DYHG K+ DPY WLEDPD+E+ K FV+ Q ++T L+ C +R
Sbjct: 3 SFQYPDVYRDETAIQDYHGHKVCDPYAWLEDPDSEQTKAFVEAQNKITVPFLEQCPIRGL 62
Query: 70 LREKITKLFDSPRYDAPFKRGNKYFYFHNTGLQPQSVLYVQDSLDAKAKVLLDPNTLSDD 129
+E++T+L+D P+Y FK+G +YFYF+NTGLQ Q VLYVQDSL+ +A+V LDPN LSDD
Sbjct: 63 YKERMTELYDYPKYSCHFKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDD 122
Query: 130 GTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWFKFSSIAWTHDS 189
GT AL + SED +Y AY LS SGSDW TIK M+++ D L KFS +AWTHD
Sbjct: 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDG 182
Query: 190 KGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGH 249
KG FY+ YP ++GK GTET +NL+ + YYH LGT QSEDILC + P+ PK++
Sbjct: 183 KGMFYNAYPQ-QDGKS--DGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAE 239
Query: 250 VTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVI 309
+++DG+Y+++ I E CDPVN+++YCDL G+ G +L +VKLID F+ +Y+ +
Sbjct: 240 LSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITG------ILKWVKLIDNFEGEYDYV 293
Query: 310 ANDDTVFTFLTNKDAPKYKIIRVDLKEPND--WFEVIPEAERDVLESATAVNLNQMIVSY 367
N+ TVFTF TN+ +P Y++I +D +P + W ++PE E+DVLE V N +++ Y
Sbjct: 294 TNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCY 353
Query: 368 LSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLK 427
L DVK LQ+ DL G+LL P+E+GSV S +++D+ +F FTSFL PGI+Y C+L
Sbjct: 354 LHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLT 413
Query: 428 TETPEMKIFRETIIPGFDRSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYG 487
E E ++FRE + G D S++ Q+F PSKDG TKIPMFIV KK IKLDGSHP LYG
Sbjct: 414 KEELEPRVFREVTVKGIDASDYQTVQIFYPSKDG-TKIPMFIVHKKGIKLDGSHPAFLYG 472
Query: 488 YGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFIS 547
YGGFNIS+TP++SVSR I +RH+G V +ANIRGGGEYGE WHKGG LA KQNCFDDF
Sbjct: 473 YGGFNISITPNYSVSRLIFVRHMGGVLAVANIRGGGEYGETWHKGGILANKQNCFDDFQC 532
Query: 548 ASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIG 607
A+EYLI GYT ++L I GGSNGGLLV C NQRPDLFGC +A VGVMDML++HK+TIG
Sbjct: 533 AAEYLIKEGYTSPKRLTINGGSNGGLLVATCANQRPDLFGCVIAQVGVMDMLKFHKYTIG 592
Query: 608 HAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLH 667
HAW +D+GCS+ ++ F WLIKYSPLHNV+ P + QYPS LLLTADHDDRVVPLH
Sbjct: 593 HAWTTDYGCSDSKQHFEWLIKYSPLHNVKLPEADD----IQYPSMLLLTADHDDRVVPLH 648
Query: 668 SLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLG 727
SLK +AT+QY++ S + Q NP++ ++ KAGHG G PT K+I+E +D + F+A+ L
Sbjct: 649 SLKFIATLQYIVGRSRK---QNNPLLIHVDTKAGHGAGKPTAKVIEEVSDMFAFIARCLN 705
Query: 728 ASWV 731
W+
Sbjct: 706 IDWI 709
|
Cleaves peptide bonds on the C-terminal side of prolyl residues within peptides that are up to approximately 30 amino acids long. Sus scrofa (taxid: 9823) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 2 EC: 6 |
| >sp|Q9XTA2|PPCE_BOVIN Prolyl endopeptidase OS=Bos taurus GN=PREP PE=2 SV=1 | Back alignment and function description |
|---|
Score = 833 bits (2151), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 394/725 (54%), Positives = 518/725 (71%), Gaps = 19/725 (2%)
Query: 10 SLQYPVARRDESVVDDYHGVKIVDPYRWLEDPDAEEVKDFVQKQVELTDSVLKNCDVRDK 69
S QYP RDE+ V DYHG KI DPY WLEDPD+E+ K FV+ Q ++T L+ C +R
Sbjct: 3 SFQYPDVYRDETAVQDYHGHKICDPYAWLEDPDSEQTKAFVEAQNKITVPFLEQCPIRGL 62
Query: 70 LREKITKLFDSPRYDAPFKRGNKYFYFHNTGLQPQSVLYVQDSLDAKAKVLLDPNTLSDD 129
+E++T+L+D P+Y FK+G +YFYF+NTGLQ Q VLYVQDSL+ +A+V LDPNTLSDD
Sbjct: 63 YKERMTELYDYPKYSCNFKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVCLDPNTLSDD 122
Query: 130 GTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWFKFSSIAWTHDS 189
GT AL + SED +Y+AY LS SGSDW TIK M+++ AD L KFS +AWTHD
Sbjct: 123 GTVALRGYAFSEDGEYVAYGLSASGSDWVTIKFMKVDGAKELADVLERVKFSCMAWTHDG 182
Query: 190 KGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGH 249
KG FY+ YP ++GK GTET +NL+ + YH LGT QSEDILC + P+ PK++
Sbjct: 183 KGMFYNAYPQ-QDGKS--DGTETSTNLHQKLCYHVLGTDQSEDILCAEFPDEPKWMGGAE 239
Query: 250 VTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVI 309
+++DG+Y+++ I E CDPVN+++YCDL P G+ G +L +VKLID F+ +Y+ +
Sbjct: 240 LSDDGRYVLLSIREGCDPVNRLWYCDLHQEPNGITG------ILKWVKLIDNFEGEYDYV 293
Query: 310 ANDDTVFTFLTNKDAPKYKIIRVDLKEPND--WFEVIPEAERDVLESATAVNLNQMIVSY 367
N+ TVFTF TN+ +P Y++I +D +P + W ++PE E+DVLE V N +++ Y
Sbjct: 294 TNEGTVFTFKTNRHSPNYRLINIDFTDPEESRWKVLVPEHEKDVLEWVACVRSNFLVLCY 353
Query: 368 LSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLK 427
L DVK LQ+ D+ G+LL P+E+GSV S +++D+ +F FTSFL PGI+Y C+L
Sbjct: 354 LHDVKNTLQLHDMATGALLKTFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLT 413
Query: 428 TETPEMKIFRETIIPGFDRSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYG 487
E E ++FRE + G D S++ Q+F PSKDG TKIPMFIV KK IKLDGSHP LYG
Sbjct: 414 KEELEPRVFREVTVKGIDASDYQTVQIFYPSKDG-TKIPMFIVHKKGIKLDGSHPAFLYG 472
Query: 488 YGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFIS 547
YGGFNIS+TP++SV R I +RH+G V +ANIRGGGEYGE WHKGG LA KQNCFDDF
Sbjct: 473 YGGFNISITPNYSVCRLIFVRHMGGVLAVANIRGGGEYGETWHKGGILANKQNCFDDFQC 532
Query: 548 ASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIG 607
A+EYLI GYT ++L I GGSNGGLLV C NQRPDLFGC +A VGVMDML++HK+TIG
Sbjct: 533 AAEYLIKEGYTSPKRLTINGGSNGGLLVATCANQRPDLFGCVIAQVGVMDMLKFHKYTIG 592
Query: 608 HAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLH 667
HAW +D+GCS+ ++ F WLIKYSPLHNV+ P + QYPS LLLTADHDDRVVPLH
Sbjct: 593 HAWTTDYGCSDNKQHFEWLIKYSPLHNVKLPEADD----IQYPSMLLLTADHDDRVVPLH 648
Query: 668 SLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLG 727
S K +AT+Q+++ S + Q NP++ ++ KAGHG G PT K+I+E +D + F+A+ L
Sbjct: 649 SPKFIATLQHLVGRSRK---QNNPLLIHVDTKAGHGAGKPTAKVIEEVSDMFAFIARCLN 705
Query: 728 ASWVE 732
W++
Sbjct: 706 IDWIQ 710
|
Cleaves peptide bonds on the C-terminal side of prolyl residues within peptides that are up to approximately 30 amino acids long. Bos taurus (taxid: 9913) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 2 EC: 6 |
| >sp|Q86AS5|PPCE_DICDI Prolyl endopeptidase OS=Dictyostelium discoideum GN=prep PE=1 SV=1 | Back alignment and function description |
|---|
Score = 485 bits (1248), Expect = e-136, Method: Compositional matrix adjust.
Identities = 287/776 (36%), Positives = 420/776 (54%), Gaps = 80/776 (10%)
Query: 11 LQYPVARRDESVVDDYHG-----VKIVDPYRWLEDPDAEEVKDFVQKQVELTDSVLKNCD 65
YP RRD+SV D + VK+ DPYR LED + E K +V ++ ++T S L +
Sbjct: 3 FNYPETRRDDSVFDIFKSTEKGSVKVYDPYRHLEDQQSPETKKWVDEENKITRSFLDQDN 62
Query: 66 VRDKLREKITKLFDSPRYDAPFKRGNKYFYFHNTGLQPQSVLYVQD------SLDAKAKV 119
+K+ +I K+ + R+D +RG+K F+ N Q+++Y+ D S D K+
Sbjct: 63 TSEKISNEIMKMLNFERFDWFRRRGSKLFFSRNPNTLNQNIIYLIDIDQISISKDGKSSA 122
Query: 120 --------LLDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRI------ 165
L+PNT S DGT +L +S+ ++ ++ S +GSDW I + +I
Sbjct: 123 KGFENAIEFLNPNTYSKDGTWSLKSFVISKSGDHVCFSYSKAGSDWEEIAVKKIITTNEL 182
Query: 166 -------------------EDQIVE-ADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKD 205
+V+ D+++W KF+SI W + GF Y+RYP P++ D
Sbjct: 183 KTNKDDEEEKEDLKKKNCLHYAVVDLPDSINWCKFTSIKWDENETGFIYNRYPKPEKVSD 242
Query: 206 MDAGTETDSNLYHEFYYHFLG-TKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEEN 264
D GTETD+NL ++ YYH LG +S D + ++ PE+P++IF + D L + +
Sbjct: 243 DDKGTETDTNLNNKVYYHKLGDANESFDRVVFECPENPQWIFGTEFSHDHSSLFISAFRD 302
Query: 265 CDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDT-VFTFLTNKD 323
C+ + +Y + E + LID FDA Y I N + FLTN
Sbjct: 303 CNVEHNLYV--IRNFQEAIAN----KSAFKVEALIDNFDACYYYITNTKQGEYFFLTNLS 356
Query: 324 APKYKIIRVDLKE-----PN-----DWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKY 373
AP ++I + L + PN ++ E+IPE + VLES + + + VSY V+
Sbjct: 357 APFNRLISIQLNDDQPIVPNSKSKLEFKEIIPEKDY-VLESVSRSSQEKFYVSYQKHVQD 415
Query: 374 VLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTETPEM 433
++++ D NG L + + ++SA +FI+F++ + P + Y + K + E+
Sbjct: 416 IIEVYDF-NGKYLKDIKLPGPGSASLSATEYHDHIFINFSNLVSPSVTYYMDSKND--EL 472
Query: 434 KIFRETIIPGFDRSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKL-DGSHPCLLYGYGGFN 492
+F+E I GF S++ QVF S TKIPMFI KK + G+ P + GYGGFN
Sbjct: 473 LLFKEPHIEGFKSSDYECKQVFYESPKDKTKIPMFIAYKKTTDITSGNAPTYMTGYGGFN 532
Query: 493 ISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYL 552
IS T SFS+ + +F IANIRGGGEYG+ WH+ G+ KQNCFDDFI A+EYL
Sbjct: 533 ISYTQSFSIRNIYFLNKFNGIFVIANIRGGGEYGKAWHEAGSKKNKQNCFDDFIGAAEYL 592
Query: 553 ISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHAWVS 612
I YT KL + GGSNGGLL+GA NQRPDLF C +A VGVMDMLR+H TIG WVS
Sbjct: 593 IKENYTNQNKLAVRGGSNGGLLMGAISNQRPDLFKCVVADVGVMDMLRFHLHTIGSNWVS 652
Query: 613 DFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLL 672
D+G S+ ++F LIKYSPL+NV P QYPS +L T DHDDRV+P HS K +
Sbjct: 653 DYGRSDNPDDFDVLIKYSPLNNV-------PKDSNQYPSIMLCTGDHDDRVIPAHSYKFI 705
Query: 673 ATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLGA 728
+ +QY L ++ P++ R+++ +GHG G K +E AD + F +K+L
Sbjct: 706 SELQYQLGKKVD-----TPLLIRVDKDSGHGAGKGLSKQNNEIADIFNFFSKVLNV 756
|
Cleaves peptide bonds on the C-terminal side of prolyl residues within peptides that are up to approximately 30 amino acids long. Dictyostelium discoideum (taxid: 44689) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 2 EC: 6 |
| >sp|Q06903|PPCE_AERHY Prolyl endopeptidase OS=Aeromonas hydrophila PE=1 SV=2 | Back alignment and function description |
|---|
Score = 477 bits (1228), Expect = e-133, Method: Compositional matrix adjust.
Identities = 284/723 (39%), Positives = 413/723 (57%), Gaps = 53/723 (7%)
Query: 11 LQYPVARRDESVVDDYHGVKIVDPYRWLEDPDAEEVKDFVQKQVELTDSVLKNCDVRDKL 70
L YPV R+ E + D Y G + DPYRWLED + E + +V+ Q +T L RD +
Sbjct: 7 LHYPVTRQSEQL-DHYFGQAVADPYRWLEDDRSPETEAWVKAQNRVTQDYLAQIPFRDAI 65
Query: 71 REKITKLFDSPRYDAPFKRGNKYFYFHNTGLQPQSVLYVQDSLDAK-AKVLLDPNTLSDD 129
+ K+ ++ + APF+ G +++F N GLQ Q+VL Q L K A+V LDPN LS D
Sbjct: 66 KGKLATSWNYAKEGAPFREGRYHYFFKNDGLQNQNVLCGQ--LAGKPAEVFLDPNLLSPD 123
Query: 130 GTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWFKFSSIAWTHDS 189
GT AL ++S S D K LAY+LS +GSDW I LM +E + L KFS I+W +
Sbjct: 124 GTTALDQLSFSRDGKTLAYSLSLAGSDWREIHLMDVESKQPLETPLRDVKFSGISWLGN- 182
Query: 190 KGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGH 249
+GFFYS Y P +G ++ A T+ H+ Y+H LGT Q ED L + ++ + G
Sbjct: 183 EGFFYSSYDKP-DGSELSARTDQ-----HKLYFHRLGTAQEEDRLVFGAIPAQRHRYVGA 236
Query: 250 -VTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEV 308
VTED +YL++ ++ N++Y DL+ R+G P + + A +
Sbjct: 237 TVTEDDRYLLISAADSTSG-NRLYVKDLT-----------REGA-PLLTVQGDLAADVSL 283
Query: 309 IANDDTVFTFLTNKDAPKYKIIRV--DLKEPNDWFEVIPEAERDVLESATAVNLNQMIVS 366
+ N + LTN+DAP +++ V D P W ++IPE ++ VL + +
Sbjct: 284 VDNKGSRLYLLTNRDAPNRRLVTVEADNPGPEQWRDLIPERQQ-VLTVHSGGGY--LFAE 340
Query: 367 YLSDVKYVLQIRDLKNGSLLHQLPIE-IGSVNAISARREDSVVFISFTSFLIPGIVYQCN 425
Y+ D ++ D +G + ++ + +GSV+ + +++D ++ F ++ P +Y+
Sbjct: 341 YMVDATARVEQFD-HDGKRVREVGLPGLGSVSGFNGKQDDPALYFGFENYAQPPTLYK-- 397
Query: 426 LKTETPEMKIFRETIIPGFDRSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLL 485
+ + + ++R + P F ++ Q F SKDG T++P+ I +K +KLDGS+P +L
Sbjct: 398 FEPNSGAISLYRASAAP-FKPEDYVSEQRFYRSKDG-TRVPLIISYRKGLKLDGSNPTIL 455
Query: 486 YGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDF 545
YGYGGF++S+TPSFSVS + LG V+ +AN+RGGGEYG+ WH G KQN FDDF
Sbjct: 456 YGYGGFDVSLTPSFSVSVANWL-DLGGVYAVANLRGGGEYGQAWHLAGTRMNKQNVFDDF 514
Query: 546 ISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFT 605
I+A+EYL + GYT++ +L I GGSNGGLLVGA + QRPDL A VGV+DMLRYH FT
Sbjct: 515 IAAAEYLKAEGYTRTDRLAIRGGSNGGLLVGAVMTQRPDLMRVACQAVGVLDMLRYHTFT 574
Query: 606 IGHAWVSDFGCSEEEEEFY-WLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVV 664
G W D+G S + E + +L YSPLH+VR YPSTL+ TADHDDRVV
Sbjct: 575 AGAGWAYDYGTSADSEAMFDYLKGYSPLHSVR--------AGVSYPSTLVTTADHDDRVV 626
Query: 665 PLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAK 724
P HS K AT+Q + +P + RIE AGHG G P K+I+++AD Y F
Sbjct: 627 PAHSFKFAATLQ-------ADDAGPHPQLIRIETNAGHGAGTPVAKLIEQSADIYAFTLF 679
Query: 725 MLG 727
+G
Sbjct: 680 EMG 682
|
Cleaves peptide bonds on the C-terminal side of prolyl residues within peptides that are up to approximately 30 amino acids long. Has an absolute requirement for an X-Pro bond in the trans configuration immediately preceding the Pro-Y scissible bond. Aeromonas hydrophila (taxid: 644) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 2 EC: 6 |
| >sp|P27028|PPCE_FLAME Prolyl endopeptidase OS=Flavobacterium meningosepticum GN=f1pep1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 471 bits (1213), Expect = e-132, Method: Compositional matrix adjust.
Identities = 274/722 (37%), Positives = 404/722 (55%), Gaps = 52/722 (7%)
Query: 11 LQYPVARRDESVVDDYHGVKIVDPYRWLEDPDAEEVKDFVQKQVELTDSVLKNCDVRDKL 70
L+YP ++ S D Y G ++ DPYRWLED AE+ K +VQ++V+ T L RD+L
Sbjct: 26 LKYPETKK-VSHTDTYFGTQVSDPYRWLEDDRAEDTKAWVQQEVKFTQDYLAQIPFRDQL 84
Query: 71 REKITKLFDSPRYDAPFKRGNKYFYFHNTGLQPQSVLYVQDSLDAKAKVLLDPNTLSDDG 130
++++ +++ + APFK+G ++ N GLQ QSVLY +D+ K +V LDPN S+ G
Sbjct: 85 KKQLMDIWNYEKISAPFKKGKYTYFSKNDGLQAQSVLYRKDAA-GKTEVFLDPNKFSEKG 143
Query: 131 TAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWFKFSSIAWTHDSK 190
T +L VS ++ +AY++S GSDW I ++ E + + L KFS I+W D +
Sbjct: 144 TTSLASVSFNKKGTLVAYSISEGGSDWNKIIILDAETKKQLDETLLDVKFSGISWLGD-E 202
Query: 191 GFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHV 250
GFFYS Y PKEG + T+ H+ Y+H LGTKQS+D L + P+ +V
Sbjct: 203 GFFYSSYDKPKEGSVLSGMTDK-----HKVYFHKLGTKQSQDELIIGGDKFPRRYIGAYV 257
Query: 251 TEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIA 310
T+D +YLV+ N N++Y DL K D F+ +I GFD+ V
Sbjct: 258 TDDQRYLVVSAA-NATNGNELYIKDLK---------NKTD----FIPIITGFDSNVNVAD 303
Query: 311 NDDTVFTFLTNKDAPKYKIIRVDLKEPN--DWFEVIPEAERDVLESATAVNLNQMIVSYL 368
D T+KDAP ++++ ++ P W +VI E + LE T +Y+
Sbjct: 304 TDGDTLYLFTDKDAPNKRLVKTTIQNPKAETWKDVIAETS-EPLEINTGGGY--FFATYM 360
Query: 369 SDVKYVLQIRDL-KNGSLLHQLPIE-IGSVNAISARREDSVVFISFTSFLIPGIVYQCNL 426
D + Q++ KNG L+ + + G+ + + + ++ SFT+++ P +++ N+
Sbjct: 361 KDA--IDQVKQYDKNGKLVRAIKLPGSGNASGFGGEKTEKDLYYSFTNYITPPTIFKYNV 418
Query: 427 KTETPEMKIFRETIIPGFDRSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLY 486
T E ++++ + F+ + QVF S DG TKIPM I KK +K DG +P +LY
Sbjct: 419 TTGNSE--VYQKPKVK-FNPENYVSEQVFYTSSDG-TKIPMMISYKKGLKKDGKNPTILY 474
Query: 487 GYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFI 546
YGGFNIS+ P+FSV I M + G ++ + NIRGGGEYG++WH G +K+N F+DFI
Sbjct: 475 SYGGFNISLQPAFSVVNAIWMEN-GGIYAVPNIRGGGEYGKKWHDAGTKMQKKNVFNDFI 533
Query: 547 SASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTI 606
+A EYL GYT + + G SNGGLLVGA + RPDL A VGV+DMLRY+KFT
Sbjct: 534 AAGEYLQKNGYTSKEYMALSGRSNGGLLVGATMTMRPDLAKVAFPGVGVLDMLRYNKFTA 593
Query: 607 GHAWVSDFGCSEEEEE-FYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVP 665
G W D+G +E+ +E F +L YSP+HNV+ YPST+++T+DHDDRVVP
Sbjct: 594 GAGWAYDYGTAEDSKEMFEYLKSYSPVHNVKA--------GTCYPSTMVITSDHDDRVVP 645
Query: 666 LHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKM 725
HS K + +Q NPI+ RIE AGHG G T++++ E AD F
Sbjct: 646 AHSFKFGSELQ-------AKQSCKNPILIRIETNAGHGAGRSTEQVVAENADLLSFALYE 698
Query: 726 LG 727
+G
Sbjct: 699 MG 700
|
Cleaves peptide bonds on the C-terminal side of prolyl residues within peptides that are up to approximately 30 amino acids long. Has an absolute requirement for an X-Pro bond in the trans configuration immediately preceding the Pro-Y scissible bond. Flavobacterium meningosepticum (taxid: 238) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 2 EC: 6 |
| >sp|P27195|PPCF_ELIMR Prolyl endopeptidase OS=Elizabethkingia miricola PE=1 SV=1 | Back alignment and function description |
|---|
Score = 460 bits (1184), Expect = e-128, Method: Compositional matrix adjust.
Identities = 268/726 (36%), Positives = 410/726 (56%), Gaps = 58/726 (7%)
Query: 10 SLQYPVARRDESVVDDYHGVKIVDPYRWLEDPDAEEVKDFVQKQVELTDSVLKNCDVRDK 69
SL+YP ++ D Y G ++ DPYRWLED AE+ K +VQ++V+ T L R +
Sbjct: 25 SLKYPETKKVNHT-DTYFGNQVSDPYRWLEDDRAEDTKAWVQQEVKFTQDYLAQIPFRGQ 83
Query: 70 LREKITKLFDSPRYDAPFKRGNKYFYFHNTGLQPQSVLYVQDSLDAKAKVLLDPNTLSDD 129
+++++ +++ + APFK+G +++ N GLQ QSVLY +D+ K +V LDPN SD
Sbjct: 84 IKKQLLDIWNYEKISAPFKKGKYTYFYKNDGLQAQSVLYRKDA-SGKTEVFLDPNKFSDK 142
Query: 130 GTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWFKFSSIAWTHDS 189
GT +L +S ++ +AY++S GSDW I ++ E + + L KFS I+W D
Sbjct: 143 GTTSLANLSFNKKGTLVAYSISEGGSDWNKIIILDAETKKQIDETLLDVKFSGISWLGD- 201
Query: 190 KGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGH 249
+GFFYS Y PK+G + T+ H+ Y+H LGTKQS+D L + P+ SG+
Sbjct: 202 EGFFYSSYDKPKDGSVLSGMTDK-----HKVYFHKLGTKQSQDELIIGGDKFPRRYLSGY 256
Query: 250 VTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVI 309
VTED +YLV+ N N++Y DL K D F+ +I GF++ ++
Sbjct: 257 VTEDQRYLVVSAA-NATNGNELYIKDLK---------NKTD----FIPIITGFESNVGLV 302
Query: 310 ANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVL-ESATAVNLNQ----MI 364
D T+K+AP ++++ ++ P PE +DV+ E++ + +N
Sbjct: 303 DTDGDTLFLHTDKNAPNMRMVKTTIQNPK------PETWKDVIAETSEPMRVNSGGGYFF 356
Query: 365 VSYLSDVKYVLQIRDL-KNGSLLHQLPI-EIGSVNAISARREDSVVFISFTSFLIPGIVY 422
+Y+ D + QI+ K G L+ ++ + G+ + + ++ SFT+++ P ++
Sbjct: 357 ATYMKDA--LSQIKQYDKTGKLVREIKLPGSGTAGGFGGEKTEKELYYSFTNYITPPTIF 414
Query: 423 QCNLKTETPEMKIFRETIIPGFDRSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHP 482
+ ++ + E ++++ + F+ + QVF S DG TKIPM I +KK +K DG +P
Sbjct: 415 KFSIDSGKSE--VYQKPKVK-FNPENYVSEQVFYTSADG-TKIPMMISNKKGLKKDGKNP 470
Query: 483 CLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCF 542
+LY YGGFNIS+ P+FSV I M + G ++ + NIRGGGEYG++WH G +K+N F
Sbjct: 471 TILYSYGGFNISLQPAFSVVNAIWMEN-GGIYAVPNIRGGGEYGKKWHDAGTKQQKKNVF 529
Query: 543 DDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYH 602
+DFI+A EYL GYT + + G SNGGLLVGA + RPDL A VGV+DMLRY+
Sbjct: 530 NDFIAAGEYLQKNGYTSKDYMALSGRSNGGLLVGATMTMRPDLAKVAFPGVGVLDMLRYN 589
Query: 603 KFTIGHAWVSDFGCSEEEEE-FYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDD 661
KFT G W D+G +E+ +E F +L YSP+HNV+ YPST+++T+DHDD
Sbjct: 590 KFTAGAGWAYDYGTAEDSKEMFEYLKSYSPVHNVK--------AGTCYPSTMVITSDHDD 641
Query: 662 RVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGF 721
RVVP HS K A +Q NP++ RIE AGHG G T++++ E AD F
Sbjct: 642 RVVPAHSFKFGAELQAKQACK-------NPVLIRIETNAGHGAGRSTEQVVMENADLLSF 694
Query: 722 MAKMLG 727
+G
Sbjct: 695 ALYEMG 700
|
Cleaves peptide bonds on the C-terminal side of prolyl residues within peptides that are up to approximately 30 amino acids long. Has an absolute requirement for an X-Pro bond in the trans configuration immediately preceding the Pro-Y scissible bond. Elizabethkingia miricola (taxid: 172045) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 2 EC: 6 |
| >sp|P55577|Y4NA_RHISN Uncharacterized peptidase y4nA OS=Rhizobium sp. (strain NGR234) GN=NGR_a02410 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 196 bits (498), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 111/327 (33%), Positives = 175/327 (53%), Gaps = 18/327 (5%)
Query: 354 SATAVNLNQMIVSYLSDVKYVLQIRDLKNG---SLLHQLPIEIGSVNAISARREDSVVFI 410
+ T N++++S LS+V ++ D G S LP E +++ S+ E +F+
Sbjct: 370 AGTTQTKNRLVLSILSNVTSEVRSFDFGKGGWSSFKLALP-ENSTLSLTSSDDESDQLFV 428
Query: 411 SFTSFLIPGIVYQCNLKTETPEMKIFRETIIPG-FDRSEFHVHQVFVPSKDGSTKIPMFI 469
FL P ++ + T E + T P FD Q + SKDG TK+P F+
Sbjct: 429 FSEGFLEPSTLFCADAATGQVE----KITSTPARFDAGGLQAQQFWATSKDG-TKVPYFL 483
Query: 470 VSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEW 529
V++K++KLDG++P +LY YGGF I + PS+S L G + +ANIRGGGE+G +W
Sbjct: 484 VARKDVKLDGTNPTILYAYGGFQIPMQPSYSAVLGKLWLEKGGAYALANIRGGGEFGPKW 543
Query: 530 HKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCA 589
H G +Q +DDF + ++ LI+ T + L I GGSNGGLL+G + QRPDL+
Sbjct: 544 HDAGLKTNRQRVYDDFQAVAQDLIAKKVTSTPHLGIMGGSNGGLLMGVQMIQRPDLWNAV 603
Query: 590 LAHVGVMDMLRYHKFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQY 649
+ V ++DM+ + + + G +W +++G ++ E +L SP HNV+ Y
Sbjct: 604 VIQVPLLDMVNFTRMSAGASWQAEYGSPDDPVEGAFLRSISPYHNVK--------AGVAY 655
Query: 650 PSTLLLTADHDDRVVPLHSLKLLATMQ 676
P T+ DDRV P+H+ K+ A +
Sbjct: 656 PEPFFETSTKDDRVGPVHARKMAALFE 682
|
Rhizobium sp. (strain NGR234) (taxid: 394) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 732 | ||||||
| 356553325 | 732 | PREDICTED: prolyl endopeptidase-like [Gl | 0.998 | 0.998 | 0.784 | 0.0 | |
| 224085976 | 731 | predicted protein [Populus trichocarpa] | 0.998 | 1.0 | 0.780 | 0.0 | |
| 224061933 | 731 | predicted protein [Populus trichocarpa] | 0.995 | 0.997 | 0.780 | 0.0 | |
| 356508957 | 727 | PREDICTED: prolyl endopeptidase-like [Gl | 0.993 | 1.0 | 0.786 | 0.0 | |
| 225459800 | 731 | PREDICTED: prolyl endopeptidase [Vitis v | 0.998 | 1.0 | 0.777 | 0.0 | |
| 147790149 | 731 | hypothetical protein VITISV_001107 [Viti | 0.998 | 1.0 | 0.777 | 0.0 | |
| 449455579 | 731 | PREDICTED: prolyl endopeptidase-like [Cu | 0.998 | 1.0 | 0.770 | 0.0 | |
| 224083215 | 733 | predicted protein [Populus trichocarpa] | 0.998 | 0.997 | 0.772 | 0.0 | |
| 307136309 | 731 | serine-type endopeptidase [Cucumis melo | 0.998 | 1.0 | 0.765 | 0.0 | |
| 371927101 | 731 | prolyl oligopeptidase [Coffea arabica] | 0.998 | 1.0 | 0.751 | 0.0 |
| >gi|356553325|ref|XP_003545007.1| PREDICTED: prolyl endopeptidase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1240 bits (3209), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 575/733 (78%), Positives = 661/733 (90%), Gaps = 2/733 (0%)
Query: 1 MASLSGIDESLQYPVARRDESVVDDYHGVKIVDPYRWLEDPDAEEVKDFVQKQVELTDSV 60
M SLS + + +QYP ARRD+SV+DD+HGVKI DPYRWLE+P+AEEVK+FVQKQV LTDSV
Sbjct: 1 MGSLSALYQPIQYPTARRDDSVLDDFHGVKIADPYRWLENPEAEEVKEFVQKQVALTDSV 60
Query: 61 LKNCDVRDKLREKITKLFDSPRYDAPFKRG-NKYFYFHNTGLQPQSVLYVQDSLDAKAKV 119
L+ CD R KL EKITKLFD+PRY+APF+RG NKYFYFHNTGLQ QSVLYVQD+L+A+A+V
Sbjct: 61 LQRCDCRPKLAEKITKLFDNPRYNAPFRRGDNKYFYFHNTGLQAQSVLYVQDTLEAEAEV 120
Query: 120 LLDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWFK 179
LLDPN LS+DGT +L +SVS+DA++LAY LS SGSDW TI LMRI D+ V+ D LSW K
Sbjct: 121 LLDPNALSEDGTVSLNTLSVSKDAEFLAYGLSSSGSDWVTINLMRIRDKTVQPDTLSWVK 180
Query: 180 FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDP 239
FSSI+WTHD+KGFFYSRYPAPK+G+ +DAGTET++NLYHE YYHFLGT QS+DILCW+DP
Sbjct: 181 FSSISWTHDTKGFFYSRYPAPKDGELVDAGTETNANLYHELYYHFLGTDQSQDILCWRDP 240
Query: 240 EHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLI 299
E+PKY+F G VTEDG+Y+++ IEE CDPVNK+YYCDLS LP GLEGF+ LLPFVKL+
Sbjct: 241 ENPKYMFGGTVTEDGKYVLLYIEEGCDPVNKLYYCDLSELPNGLEGFRNESSLLPFVKLV 300
Query: 300 DGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVN 359
D FD QY+ IANDDT+FTFLTNKDAPKYK++RVDLKEPN W +VIPE+E+DVLESA AVN
Sbjct: 301 DKFDGQYQAIANDDTLFTFLTNKDAPKYKLVRVDLKEPNAWTDVIPESEKDVLESARAVN 360
Query: 360 LNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPG 419
NQ+IVSYLSDVKYVLQ+RDL+ GSL H+LPI+IG+V+ ISARRED+V+FI FTSFL PG
Sbjct: 361 GNQLIVSYLSDVKYVLQVRDLETGSLQHKLPIDIGTVSEISARREDTVLFIGFTSFLTPG 420
Query: 420 IVYQCNLKTETPEMKIFRETIIPGFDRSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDG 479
I+YQC+L T+TP+MKIFRE IPGFDRSEFHV+QVFVPSKDG TKIPMFIV++K+I LDG
Sbjct: 421 IIYQCDLGTQTPDMKIFREIDIPGFDRSEFHVNQVFVPSKDG-TKIPMFIVARKDIVLDG 479
Query: 480 SHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQ 539
SHPCLLYGYGGFN+S+TP F++SRT+L RHLGAVFCIANIRGGGEYGEEWHK G+LA KQ
Sbjct: 480 SHPCLLYGYGGFNVSLTPYFNISRTVLARHLGAVFCIANIRGGGEYGEEWHKSGSLANKQ 539
Query: 540 NCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDML 599
NCFDDFISA+EYL+SAGYTQ RKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDML
Sbjct: 540 NCFDDFISAAEYLVSAGYTQPRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDML 599
Query: 600 RYHKFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADH 659
R+HKFTIGHAW +D+GCSE+EEEF+WLIKYSPLHNVRRPWEQ+PD+ QYPST+LLTADH
Sbjct: 600 RFHKFTIGHAWATDYGCSEKEEEFHWLIKYSPLHNVRRPWEQHPDQSIQYPSTMLLTADH 659
Query: 660 DDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRY 719
DDRVVPLHSLKLLAT+QYVL TSL+ SPQTNPIIGRIE KAGHG G PTQKMIDEAADRY
Sbjct: 660 DDRVVPLHSLKLLATLQYVLVTSLDKSPQTNPIIGRIECKAGHGAGRPTQKMIDEAADRY 719
Query: 720 GFMAKMLGASWVE 732
FMAKML A W+E
Sbjct: 720 SFMAKMLDAHWIE 732
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224085976|ref|XP_002307762.1| predicted protein [Populus trichocarpa] gi|222857211|gb|EEE94758.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1233 bits (3191), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 571/732 (78%), Positives = 651/732 (88%), Gaps = 1/732 (0%)
Query: 1 MASLSGIDESLQYPVARRDESVVDDYHGVKIVDPYRWLEDPDAEEVKDFVQKQVELTDSV 60
M SLS ++ LQYP+ARRD+ ++DDYHGVKI DPYRWLEDPD EEVK FVQ+QV+LT+SV
Sbjct: 1 MGSLSALERPLQYPIARRDDIIIDDYHGVKIADPYRWLEDPDDEEVKGFVQEQVKLTESV 60
Query: 61 LKNCDVRDKLREKITKLFDSPRYDAPFKRGNKYFYFHNTGLQPQSVLYVQDSLDAKAKVL 120
L+ CD R+KLREKITKLFD PRY PFKRG+KYFYFHNTGLQ Q VL+VQDSL+ + KVL
Sbjct: 61 LQTCDAREKLREKITKLFDHPRYYTPFKRGDKYFYFHNTGLQAQDVLFVQDSLEGEPKVL 120
Query: 121 LDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWFKF 180
LDPN LS+DGT +L +S+SEDAKYLAY LS SGSDW TIK+MR+ED IVEAD L+W KF
Sbjct: 121 LDPNGLSEDGTVSLNTLSLSEDAKYLAYGLSTSGSDWVTIKVMRVEDNIVEADTLNWVKF 180
Query: 181 SSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPE 240
+ I+WTHDSKGFFYSRYPAPKEG+++DAGTET++NLYHE YYHF+GT QSEDI CW+D E
Sbjct: 181 TGISWTHDSKGFFYSRYPAPKEGENLDAGTETNANLYHELYYHFVGTDQSEDIQCWRDSE 240
Query: 241 HPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLID 300
+PKY+F VT+DG+YL++ I ENCDPVNKVYYCD+SA +GLEGFK + LLPF+KLID
Sbjct: 241 NPKYMFGAGVTDDGKYLLLYISENCDPVNKVYYCDMSAFHDGLEGFKGGNALLPFIKLID 300
Query: 301 GFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNL 360
FDAQY+ IANDDTVFTFLTNKDAP+YK++RVDLKEP+ W +V+PE+E+DVLESA AVN
Sbjct: 301 DFDAQYQEIANDDTVFTFLTNKDAPRYKVVRVDLKEPSSWIDVVPESEKDVLESAFAVNG 360
Query: 361 NQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGI 420
++MIV YLSDVKYV+QIRDLK GSLLHQLP +IGSV ISARR DS VFI F SFL PGI
Sbjct: 361 DKMIVCYLSDVKYVIQIRDLKTGSLLHQLPTDIGSVTGISARRRDSTVFIGFASFLTPGI 420
Query: 421 VYQCNLKTETPEMKIFRETIIPGFDRSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGS 480
+YQCNL +E P+MKIFRE +PGF+RSEF V+QVFV SKDG TKIPMFIV+KKNI LDGS
Sbjct: 421 IYQCNLDSEVPDMKIFREISVPGFNRSEFQVNQVFVRSKDG-TKIPMFIVAKKNITLDGS 479
Query: 481 HPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQN 540
HPCLLY YGGFNIS+TPSFSVSR +L RHLG+VFCIANIRGGGEYGEEWHK G+LA+KQN
Sbjct: 480 HPCLLYAYGGFNISITPSFSVSRIVLTRHLGSVFCIANIRGGGEYGEEWHKEGSLARKQN 539
Query: 541 CFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLR 600
CFDDFISA+EYL+SAGYTQ +KLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLR
Sbjct: 540 CFDDFISAAEYLVSAGYTQPKKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLR 599
Query: 601 YHKFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHD 660
+HKFTIGHAW SDFGCS++EEEF WL KYSPLHNVRRPWEQ+P++P QYPST+LLTADHD
Sbjct: 600 FHKFTIGHAWTSDFGCSDKEEEFGWLFKYSPLHNVRRPWEQHPEQPSQYPSTMLLTADHD 659
Query: 661 DRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYG 720
DRVVPLHSLKLLATMQY+LCTSL+NSPQTNPIIGRI+ KAGHG G PTQK+IDEAADRY
Sbjct: 660 DRVVPLHSLKLLATMQYILCTSLKNSPQTNPIIGRIDCKAGHGAGRPTQKLIDEAADRYS 719
Query: 721 FMAKMLGASWVE 732
FMAKML ASW E
Sbjct: 720 FMAKMLEASWTE 731
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224061933|ref|XP_002300671.1| predicted protein [Populus trichocarpa] gi|222842397|gb|EEE79944.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1232 bits (3188), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 570/730 (78%), Positives = 649/730 (88%), Gaps = 1/730 (0%)
Query: 1 MASLSGIDESLQYPVARRDESVVDDYHGVKIVDPYRWLEDPDAEEVKDFVQKQVELTDSV 60
M SLS + LQYP ARRD+SV+DDYHGVKI DPYRWLEDPDAEEVK+FVQ+QV LT+SV
Sbjct: 1 MGSLSALSLPLQYPTARRDDSVIDDYHGVKIADPYRWLEDPDAEEVKEFVQEQVTLTESV 60
Query: 61 LKNCDVRDKLREKITKLFDSPRYDAPFKRGNKYFYFHNTGLQPQSVLYVQDSLDAKAKVL 120
LK CD R++LREKITKLFD PRY PFKRGNK+FYFHNTGLQ Q VLYVQD L+ + +VL
Sbjct: 61 LKTCDTRERLREKITKLFDHPRYYVPFKRGNKFFYFHNTGLQAQDVLYVQDCLEGEPEVL 120
Query: 121 LDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWFKF 180
LDPN S+DGT +L +S+SEDAKYLAY LS SGSDW TIK+M +E++IVEAD ++W KF
Sbjct: 121 LDPNGFSEDGTVSLNTLSISEDAKYLAYGLSTSGSDWITIKVMHVEEKIVEADTVNWVKF 180
Query: 181 SSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPE 240
+SI WTHDSKGFFYSRYPAPKEG+++DAGTET +NLYHE Y+HF+GT QSEDILCW+D E
Sbjct: 181 TSIGWTHDSKGFFYSRYPAPKEGENLDAGTETHANLYHELYHHFVGTDQSEDILCWRDSE 240
Query: 241 HPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLID 300
+PKY+F VT+DG+YL++ I ENCDPVNKVYYCD+SA +GLEGFK LLPF+KLID
Sbjct: 241 NPKYMFGAGVTDDGKYLLLYITENCDPVNKVYYCDMSAFSDGLEGFKGGKSLLPFIKLID 300
Query: 301 GFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNL 360
FDAQY+ IANDDTVFTFLTNKDAPKYK++RVDLKEP W +V+PE +DVLESA AVN
Sbjct: 301 NFDAQYQHIANDDTVFTFLTNKDAPKYKVVRVDLKEPGSWIDVVPEYGKDVLESACAVNG 360
Query: 361 NQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGI 420
++MIVSYL DVKYVLQIRDL GSLLHQLPI+IGSV ISARR+DS VFI FTSFL PGI
Sbjct: 361 DKMIVSYLRDVKYVLQIRDLNTGSLLHQLPIDIGSVTGISARRKDSTVFIGFTSFLTPGI 420
Query: 421 VYQCNLKTETPEMKIFRETIIPGFDRSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGS 480
+YQCNL T P+MKIFRE +PGFDR+EF V+QVFVPSKDG TKIPMFIV+KKNIKLDGS
Sbjct: 421 IYQCNLDTGVPDMKIFREITVPGFDRTEFQVNQVFVPSKDG-TKIPMFIVAKKNIKLDGS 479
Query: 481 HPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQN 540
HPCLLY YGGFNIS+TPSFS+SRT+L RHLGAVFCIANIRGGGEYGEEWHK G+LA+KQN
Sbjct: 480 HPCLLYAYGGFNISLTPSFSISRTVLTRHLGAVFCIANIRGGGEYGEEWHKAGSLARKQN 539
Query: 541 CFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLR 600
CFDDFISASEYL++AGYTQ +KLCIEGGSNGGLL+GACINQRPDLFGCALAHVGVMDMLR
Sbjct: 540 CFDDFISASEYLVTAGYTQPKKLCIEGGSNGGLLIGACINQRPDLFGCALAHVGVMDMLR 599
Query: 601 YHKFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHD 660
+HKFTIGHAW SDFGCS+++EEF WLIKYSPLHNVRRPWEQ+P++P QYPST+LLTADHD
Sbjct: 600 FHKFTIGHAWTSDFGCSDKKEEFGWLIKYSPLHNVRRPWEQHPEQPSQYPSTMLLTADHD 659
Query: 661 DRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYG 720
DRVVPLHSLKLLATMQ++LCTSL+ SPQTNPIIGRI+ KAGHG G PTQK+ID+AADRY
Sbjct: 660 DRVVPLHSLKLLATMQHILCTSLKKSPQTNPIIGRIDCKAGHGAGRPTQKLIDQAADRYS 719
Query: 721 FMAKMLGASW 730
FMAKM+GASW
Sbjct: 720 FMAKMVGASW 729
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356508957|ref|XP_003523219.1| PREDICTED: prolyl endopeptidase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1230 bits (3183), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 576/732 (78%), Positives = 649/732 (88%), Gaps = 5/732 (0%)
Query: 1 MASLSGIDESLQYPVARRDESVVDDYHGVKIVDPYRWLEDPDAEEVKDFVQKQVELTDSV 60
MASL +L YP ARRD+SVV+DYHGVKI DPYRWLEDPDAEEVK+FV KQV+LTDSV
Sbjct: 1 MASLC----ALNYPPARRDDSVVEDYHGVKIADPYRWLEDPDAEEVKEFVAKQVQLTDSV 56
Query: 61 LKNCDVRDKLREKITKLFDSPRYDAPFKRGNKYFYFHNTGLQPQSVLYVQDSLDAKAKVL 120
L+ C+ R KLRE ITKLFD PRYDAPF+R NKYFYFHNTGLQPQ++LYVQ+SL+ +A+ L
Sbjct: 57 LQKCETRGKLRETITKLFDHPRYDAPFRRANKYFYFHNTGLQPQNILYVQESLEGEAEAL 116
Query: 121 LDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWFKF 180
LDPNT S+DGT +L +SVSEDAKYLAYALS SGSDW TIK+MRIED+ VE D LSW KF
Sbjct: 117 LDPNTFSEDGTVSLSTLSVSEDAKYLAYALSSSGSDWTTIKVMRIEDRNVEPDTLSWVKF 176
Query: 181 SSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPE 240
SSI+WTHD KGFFYSRYPAPK+G+ +DAGTET++NL+H+ YYHFLGT QSEDILCW+DPE
Sbjct: 177 SSISWTHDGKGFFYSRYPAPKDGEVVDAGTETNANLHHQLYYHFLGTDQSEDILCWRDPE 236
Query: 241 HPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLID 300
+PKY F G VT+DG+Y+++ I E CDPVNK+YYCDLS LP LEGF+ + LLPF KLID
Sbjct: 237 NPKYTFGGSVTDDGKYILLHIAEGCDPVNKLYYCDLSKLPNALEGFRNGNSLLPFAKLID 296
Query: 301 GFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNL 360
FDAQYE IANDDTVFTFLTNKDAPKYKI+RVDLKEP W +V+ E+E+DVLESA AVN
Sbjct: 297 NFDAQYEAIANDDTVFTFLTNKDAPKYKIVRVDLKEPTAWADVLQESEKDVLESACAVNG 356
Query: 361 NQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGI 420
NQ+IVSYLSDVKY+LQ+RDLK GSLLHQLPIEIGSV+ ISARREDSVVFI FTSFL PGI
Sbjct: 357 NQLIVSYLSDVKYLLQVRDLKTGSLLHQLPIEIGSVSEISARREDSVVFIGFTSFLTPGI 416
Query: 421 VYQCNLKTETPEMKIFRETIIPGFDRSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGS 480
+YQCNL TE P+MKIFRE ++PGFDRSEFHV Q FV SKDG TKIPMFIV+KK+I LDGS
Sbjct: 417 IYQCNLGTEIPDMKIFREIVVPGFDRSEFHVKQDFVTSKDG-TKIPMFIVAKKDITLDGS 475
Query: 481 HPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQN 540
HPCLLYGYGGFNI++TP FSVSR +L RHLG VF IANIRGGGEYGEEWHK G+LA+KQN
Sbjct: 476 HPCLLYGYGGFNINITPYFSVSRIVLTRHLGVVFSIANIRGGGEYGEEWHKAGSLARKQN 535
Query: 541 CFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLR 600
CFDDFISA+EYL+S GYTQ +KLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLR
Sbjct: 536 CFDDFISAAEYLVSTGYTQPKKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLR 595
Query: 601 YHKFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHD 660
+HKFTIGHAW SD+GCS++EEEF+WLIKYSPLHNVRRPWEQ+ D+ FQYPST+LLTADHD
Sbjct: 596 FHKFTIGHAWTSDYGCSDKEEEFHWLIKYSPLHNVRRPWEQHHDQSFQYPSTMLLTADHD 655
Query: 661 DRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYG 720
DRVVPLH+LKLLATMQYVLCTSLE SPQTN IIGRI+ K+GHG G PTQKMIDEAADRYG
Sbjct: 656 DRVVPLHTLKLLATMQYVLCTSLEKSPQTNAIIGRIDCKSGHGAGRPTQKMIDEAADRYG 715
Query: 721 FMAKMLGASWVE 732
FMAK+L W+E
Sbjct: 716 FMAKVLEVHWIE 727
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225459800|ref|XP_002285910.1| PREDICTED: prolyl endopeptidase [Vitis vinifera] gi|302141691|emb|CBI18894.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1224 bits (3166), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 569/732 (77%), Positives = 651/732 (88%), Gaps = 1/732 (0%)
Query: 1 MASLSGIDESLQYPVARRDESVVDDYHGVKIVDPYRWLEDPDAEEVKDFVQKQVELTDSV 60
M S+ ESL+YP+ARRDESVVDDYHGV I DPYRWLEDPDA+EVK+FV+KQV+LTDSV
Sbjct: 1 MGSVGASGESLKYPLARRDESVVDDYHGVLISDPYRWLEDPDAQEVKEFVEKQVKLTDSV 60
Query: 61 LKNCDVRDKLREKITKLFDSPRYDAPFKRGNKYFYFHNTGLQPQSVLYVQDSLDAKAKVL 120
L+ CD R+KLRE ITKLFD PR+DAPF+RG+KYFYFHNTGLQ Q VLYVQDSLD KA+VL
Sbjct: 61 LQTCDTREKLRETITKLFDHPRFDAPFRRGDKYFYFHNTGLQAQKVLYVQDSLDGKAEVL 120
Query: 121 LDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWFKF 180
LDPN LS+DGT +L +VSEDAKYLAY LS SGSDW TIK+MR+ED+ VE D LSW KF
Sbjct: 121 LDPNGLSEDGTVSLNTCAVSEDAKYLAYGLSSSGSDWVTIKVMRVEDKRVETDTLSWVKF 180
Query: 181 SSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPE 240
S I+WTHDSKGFFY RYPAPKE + +DAGTET+SNL E YYHFLGT QS+DILCWKDP+
Sbjct: 181 SGISWTHDSKGFFYCRYPAPKEDEKLDAGTETNSNLNQELYYHFLGTDQSQDILCWKDPD 240
Query: 241 HPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLID 300
+PK++F VT+DG+Y+++ I E+C+ VNKVY+CD+++LPEGLEGF++R LLPF+KLID
Sbjct: 241 NPKHMFGADVTDDGKYVLLYISESCEEVNKVYHCDITSLPEGLEGFRERKDLLPFIKLID 300
Query: 301 GFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNL 360
FDA+Y IANDDT+FTF+TNKDAPKYK+++VDLKEP+ W V+ EAE+DVLESA AVN
Sbjct: 301 NFDARYHAIANDDTLFTFMTNKDAPKYKLVQVDLKEPSIWNVVLEEAEKDVLESAYAVNG 360
Query: 361 NQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGI 420
NQ++V YLSDVKYVLQIRDLK GSLLH LPI+IGSV ISARR DS VFI FTSFL PGI
Sbjct: 361 NQILVCYLSDVKYVLQIRDLKTGSLLHDLPIDIGSVFDISARRRDSTVFIGFTSFLTPGI 420
Query: 421 VYQCNLKTETPEMKIFRETIIPGFDRSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGS 480
+Y CNL+ P+MKIFRE ++PGFDR+EF V QVFVPSKDG TKIPMFIV++KNI +DGS
Sbjct: 421 IYHCNLEAGVPDMKIFREIVVPGFDRTEFCVDQVFVPSKDG-TKIPMFIVARKNIPMDGS 479
Query: 481 HPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQN 540
HPCLLYGYGGFNIS+TPSFSVSR +L RHLGAVFCIANIRGGGEYG+EWHK G+LAKKQN
Sbjct: 480 HPCLLYGYGGFNISITPSFSVSRIVLSRHLGAVFCIANIRGGGEYGQEWHKSGSLAKKQN 539
Query: 541 CFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLR 600
CFDDFISA+EYL+SAGYTQ RKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLR
Sbjct: 540 CFDDFISAAEYLVSAGYTQPRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLR 599
Query: 601 YHKFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHD 660
+HKFTIGHAW SD+GCSE+EEEF+WLIKYSPLHNVRRPWEQ+PD+P QYP+T++LTADHD
Sbjct: 600 FHKFTIGHAWTSDYGCSEKEEEFHWLIKYSPLHNVRRPWEQSPDQPSQYPATMILTADHD 659
Query: 661 DRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYG 720
DRVVPLHSLKLLATMQY+LCTS+E SPQTNPIIGRIE KAGHG G PTQKMIDEAADRY
Sbjct: 660 DRVVPLHSLKLLATMQYILCTSVEKSPQTNPIIGRIECKAGHGAGRPTQKMIDEAADRYS 719
Query: 721 FMAKMLGASWVE 732
F+AKML ASW+E
Sbjct: 720 FLAKMLEASWIE 731
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147790149|emb|CAN70125.1| hypothetical protein VITISV_001107 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1223 bits (3164), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 569/732 (77%), Positives = 650/732 (88%), Gaps = 1/732 (0%)
Query: 1 MASLSGIDESLQYPVARRDESVVDDYHGVKIVDPYRWLEDPDAEEVKDFVQKQVELTDSV 60
M S+ ESL+YP+ARRDESVVDDYHGV I DPYRWLEDPDA+EVK+FV+KQV+LTDSV
Sbjct: 1 MGSVGASGESLKYPLARRDESVVDDYHGVLISDPYRWLEDPDAQEVKEFVEKQVKLTDSV 60
Query: 61 LKNCDVRDKLREKITKLFDSPRYDAPFKRGNKYFYFHNTGLQPQSVLYVQDSLDAKAKVL 120
L+ CD R+KLRE ITKLFD PR+DAPF+RG+KYFYFHNTGLQ Q VLYVQDSLD KA+VL
Sbjct: 61 LQTCDTREKLRETITKLFDHPRFDAPFRRGDKYFYFHNTGLQAQKVLYVQDSLDGKAEVL 120
Query: 121 LDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWFKF 180
LDPN LS+DGT +L +VSEDAKYLAY LS SGSDW TIK+MR+ED+ VE D LSW KF
Sbjct: 121 LDPNGLSEDGTVSLNTCAVSEDAKYLAYGLSSSGSDWVTIKVMRVEDKRVETDTLSWVKF 180
Query: 181 SSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPE 240
S I+WTHDSKGFFY RYPAPKE + +DAGTET+SNL E YYHFLGT QS+DILCWKDP+
Sbjct: 181 SGISWTHDSKGFFYCRYPAPKEDEKLDAGTETNSNLNQELYYHFLGTDQSQDILCWKDPD 240
Query: 241 HPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLID 300
+PK++F VT+DG+Y+++ I E+C+ VNKVY+CD+++LPEGLEGF++R LLPF+KLID
Sbjct: 241 NPKHMFGADVTDDGKYVLLYISESCEEVNKVYHCDITSLPEGLEGFRERKDLLPFIKLID 300
Query: 301 GFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNL 360
FDA+Y IANDDT+FTF+TNKDAPKYK+++VDLKEP+ W V+ EAE+DVLESA AVN
Sbjct: 301 NFDARYHAIANDDTLFTFMTNKDAPKYKLVQVDLKEPSIWNVVLEEAEKDVLESAYAVNG 360
Query: 361 NQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGI 420
NQ++V YLSDVKYVLQIRDLK GSLLH LPI+IGSV ISARR DS VFI FTSFL PGI
Sbjct: 361 NQILVCYLSDVKYVLQIRDLKTGSLLHDLPIDIGSVFDISARRRDSTVFIGFTSFLTPGI 420
Query: 421 VYQCNLKTETPEMKIFRETIIPGFDRSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGS 480
+Y CNL+ P MKIFRE ++PGFDR+EF V QVFVPSKDG TKIPMFIV++KNI +DGS
Sbjct: 421 IYHCNLEAGVPXMKIFREIVVPGFDRTEFCVDQVFVPSKDG-TKIPMFIVARKNIPMDGS 479
Query: 481 HPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQN 540
HPCLLYGYGGFNIS+TPSFSVSR +L RHLGAVFCIANIRGGGEYG+EWHK G+LAKKQN
Sbjct: 480 HPCLLYGYGGFNISITPSFSVSRIVLSRHLGAVFCIANIRGGGEYGQEWHKSGSLAKKQN 539
Query: 541 CFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLR 600
CFDDFISA+EYL+SAGYTQ RKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLR
Sbjct: 540 CFDDFISAAEYLVSAGYTQPRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLR 599
Query: 601 YHKFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHD 660
+HKFTIGHAW SD+GCSE+EEEF+WLIKYSPLHNVRRPWEQ+PD+P QYP+T++LTADHD
Sbjct: 600 FHKFTIGHAWTSDYGCSEKEEEFHWLIKYSPLHNVRRPWEQSPDQPSQYPATMILTADHD 659
Query: 661 DRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYG 720
DRVVPLHSLKLLATMQY+LCTS+E SPQTNPIIGRIE KAGHG G PTQKMIDEAADRY
Sbjct: 660 DRVVPLHSLKLLATMQYILCTSVEKSPQTNPIIGRIECKAGHGAGRPTQKMIDEAADRYS 719
Query: 721 FMAKMLGASWVE 732
F+AKML ASW+E
Sbjct: 720 FLAKMLEASWIE 731
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449455579|ref|XP_004145530.1| PREDICTED: prolyl endopeptidase-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1220 bits (3156), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 564/732 (77%), Positives = 650/732 (88%), Gaps = 1/732 (0%)
Query: 1 MASLSGIDESLQYPVARRDESVVDDYHGVKIVDPYRWLEDPDAEEVKDFVQKQVELTDSV 60
M SLS + + YP ARRD+SVVDDYHG +IVDPYRWLEDPDA+EVK+FV+KQV+LT+SV
Sbjct: 1 MGSLSALIDPFLYPTARRDDSVVDDYHGCQIVDPYRWLEDPDADEVKEFVEKQVKLTESV 60
Query: 61 LKNCDVRDKLREKITKLFDSPRYDAPFKRGNKYFYFHNTGLQPQSVLYVQDSLDAKAKVL 120
L+ CD R+KLR KIT+ FD PRYD PFKRGNKYFYFHNTGLQ Q++LYVQDSLD + +VL
Sbjct: 61 LQKCDTREKLRAKITEQFDHPRYDPPFKRGNKYFYFHNTGLQAQNILYVQDSLDGEPEVL 120
Query: 121 LDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWFKF 180
LDPN LS+DGT +L +SVS+DAKYLAY LS SGSDW IK+MRI+D+ E D LSW KF
Sbjct: 121 LDPNALSEDGTVSLSNLSVSKDAKYLAYGLSSSGSDWVKIKVMRIDDKKAEPDTLSWVKF 180
Query: 181 SSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPE 240
SSI+WT D KGFFYSRYPAPKE +DAGTET++NLYHE YYHFLGT QS+D+LCW+D +
Sbjct: 181 SSISWTVDGKGFFYSRYPAPKEVGTLDAGTETNANLYHELYYHFLGTDQSDDVLCWRDQD 240
Query: 241 HPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLID 300
HPKY+FS VT+DG+Y++M IEE CDPVNK YYC++SALP GLEGFK ++ LLPF KLID
Sbjct: 241 HPKYLFSASVTDDGKYVLMPIEEGCDPVNKFYYCNISALPNGLEGFKGKNDLLPFTKLID 300
Query: 301 GFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNL 360
FDAQY IANDDT+FTF+TNK+APKYK++RVDL +P W E++PE+++DVLESA AVN
Sbjct: 301 DFDAQYYAIANDDTLFTFITNKNAPKYKLVRVDLNDPTVWTELLPESDKDVLESACAVNG 360
Query: 361 NQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGI 420
+QMIVSYLSDVKYVLQIRDLK+GSLLHQLPI+IG+VN ISARREDS++FI FTSFL PGI
Sbjct: 361 DQMIVSYLSDVKYVLQIRDLKSGSLLHQLPIDIGTVNGISARREDSLIFIGFTSFLTPGI 420
Query: 421 VYQCNLKTETPEMKIFRETIIPGFDRSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGS 480
+YQCNL++ TP++KIFRET++PGF+RS F+V QVFV SKDG T IPMF+V++KNI DGS
Sbjct: 421 IYQCNLESGTPDLKIFRETVVPGFERSAFNVDQVFVRSKDG-TNIPMFVVARKNIVFDGS 479
Query: 481 HPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQN 540
HPCLLYGYGGFNIS+TPSFSVSRT+LMRHLGAVFC+ANIRGGGEYGEEWHK G+LAKKQN
Sbjct: 480 HPCLLYGYGGFNISLTPSFSVSRTVLMRHLGAVFCVANIRGGGEYGEEWHKAGSLAKKQN 539
Query: 541 CFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLR 600
CFDDFIS++EYLISAGYTQ KLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLR
Sbjct: 540 CFDDFISSAEYLISAGYTQPSKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLR 599
Query: 601 YHKFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHD 660
+HKFTIGHAW SD+GCS+ EEEF WLIKYSPLHNV+RPWEQ+PD+ QYPST+LLTADHD
Sbjct: 600 FHKFTIGHAWTSDYGCSDNEEEFKWLIKYSPLHNVKRPWEQHPDRLLQYPSTMLLTADHD 659
Query: 661 DRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYG 720
DRVVPLHSLKLLATMQYVLCTSLE SPQTNPIIGRIE KAGHG G PTQKMIDEA+DRY
Sbjct: 660 DRVVPLHSLKLLATMQYVLCTSLEKSPQTNPIIGRIECKAGHGAGRPTQKMIDEASDRYA 719
Query: 721 FMAKMLGASWVE 732
FMA ML A+W++
Sbjct: 720 FMAMMLAATWID 731
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224083215|ref|XP_002306966.1| predicted protein [Populus trichocarpa] gi|222856415|gb|EEE93962.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1217 bits (3150), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 567/734 (77%), Positives = 652/734 (88%), Gaps = 3/734 (0%)
Query: 1 MASLSGIDESLQYPVARRDESVVDDYHGVKIVDPYRWLEDPDAEEVKDFVQKQVELTDSV 60
M SLS +D+ LQYP+ARRD++V+DDYHGVKI DPYRWLEDPDAEEVK FV++QV+LT+SV
Sbjct: 1 MGSLSALDKPLQYPIARRDDAVIDDYHGVKIADPYRWLEDPDAEEVKGFVREQVKLTESV 60
Query: 61 LKNCDVRDKLREKITKLFDSPRYDAPFKRGNKYFYFHNTGLQPQSVLYVQDSLDAKAKVL 120
L CD R+KLREKITKLFD PRYDAPFKRGNKYFYFHNTGLQ Q+VLYVQDSL+ + VL
Sbjct: 61 LNACDTREKLREKITKLFDHPRYDAPFKRGNKYFYFHNTGLQAQNVLYVQDSLEGEPDVL 120
Query: 121 LDPNTLSDDGTAALIK--VSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWF 178
LDPN LS+DGT +L +SVSEDAKYLAY LS SGSDW TIK+MR+ED+IVEAD L+W
Sbjct: 121 LDPNGLSEDGTVSLNSETLSVSEDAKYLAYGLSTSGSDWVTIKVMRVEDKIVEADTLNWV 180
Query: 179 KFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKD 238
KF+ ++WTHD KGFFY RYP PKEG+++DAG ET+SNLYHE YYHFLGT QSEDILCW+D
Sbjct: 181 KFTGVSWTHDGKGFFYCRYPNPKEGENLDAGMETNSNLYHELYYHFLGTDQSEDILCWRD 240
Query: 239 PEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKL 298
E+PKY+F VT+DG+YL++ IEE+CDPVNKVYYCD+SA +GLEGFK + LLPF+KL
Sbjct: 241 LENPKYMFEAGVTDDGKYLLLYIEESCDPVNKVYYCDMSAFSDGLEGFKGGNSLLPFIKL 300
Query: 299 IDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAV 358
+D FDA+Y IAND T+FTFLTNKDAPKYKI+RVDLKEP+ W +V+PE+E+DVLESA AV
Sbjct: 301 VDNFDAKYHEIANDGTLFTFLTNKDAPKYKIVRVDLKEPSSWIDVVPESEKDVLESAYAV 360
Query: 359 NLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIP 418
+ ++MIVSYL+DVK+VLQIRDLK GSLLH+LPI+IGSV ISARREDS VFI FTSFL
Sbjct: 361 HGDKMIVSYLNDVKHVLQIRDLKTGSLLHRLPIDIGSVTGISARREDSTVFIEFTSFLTS 420
Query: 419 GIVYQCNLKTETPEMKIFRETIIPGFDRSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLD 478
I+YQCNL TE P++KIFRE +PGF+R+EF V+QVFVPSKDG T+IPMFIV+KKNI LD
Sbjct: 421 RIIYQCNLDTEVPDVKIFREISVPGFNRTEFQVNQVFVPSKDG-TRIPMFIVAKKNITLD 479
Query: 479 GSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKK 538
GSHPCLLY YGGFNIS+TPSFSVSR +L RHLG+V CIANIRGGGEYGEEWHK G+LA+K
Sbjct: 480 GSHPCLLYAYGGFNISITPSFSVSRIVLTRHLGSVVCIANIRGGGEYGEEWHKAGSLARK 539
Query: 539 QNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDM 598
QNCFDDFISA+EYL+SAGYTQ +KLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDM
Sbjct: 540 QNCFDDFISAAEYLVSAGYTQPKKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDM 599
Query: 599 LRYHKFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTAD 658
LR+HKFTIGHAW SD+GCS+++EEF WLIKYSPLHNVRRPWEQ+P++P QYP T+LLTAD
Sbjct: 600 LRFHKFTIGHAWTSDYGCSDKKEEFDWLIKYSPLHNVRRPWEQHPEQPSQYPPTMLLTAD 659
Query: 659 HDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADR 718
HDDRVVPLHSLKLLATMQY+LCTSLENSPQTNPIIGRIE KAGHG G PT+K IDEAAD
Sbjct: 660 HDDRVVPLHSLKLLATMQYILCTSLENSPQTNPIIGRIECKAGHGAGRPTKKKIDEAADT 719
Query: 719 YGFMAKMLGASWVE 732
Y FMA+ML ASW E
Sbjct: 720 YSFMARMLDASWNE 733
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|307136309|gb|ADN34133.1| serine-type endopeptidase [Cucumis melo subsp. melo] | Back alignment and taxonomy information |
|---|
Score = 1205 bits (3118), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 560/732 (76%), Positives = 645/732 (88%), Gaps = 1/732 (0%)
Query: 1 MASLSGIDESLQYPVARRDESVVDDYHGVKIVDPYRWLEDPDAEEVKDFVQKQVELTDSV 60
M SLS + + YP ARRD+SVVDDYHG +I DPYRWLEDPDA+EVK+FV+KQV+LT+SV
Sbjct: 1 MGSLSALIDPFLYPTARRDDSVVDDYHGFQIPDPYRWLEDPDADEVKEFVEKQVKLTESV 60
Query: 61 LKNCDVRDKLREKITKLFDSPRYDAPFKRGNKYFYFHNTGLQPQSVLYVQDSLDAKAKVL 120
L+ CD R+KLR KIT+LFD PRY+ PFKRGNKYFY+HNTGLQ QSVLYVQ+SLD + +VL
Sbjct: 61 LQKCDTREKLRAKITELFDHPRYEPPFKRGNKYFYYHNTGLQAQSVLYVQNSLDGEPEVL 120
Query: 121 LDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWFKF 180
LDPN LS+DGT +L +SVS+DAKYLAY LS SGSDW TIK+MR++D+ E D LSW KF
Sbjct: 121 LDPNALSEDGTVSLSNLSVSKDAKYLAYGLSSSGSDWVTIKVMRVDDKKTEPDTLSWVKF 180
Query: 181 SSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPE 240
SSI+WT D KGFFYSRYPAPKE +DAGTET++NLYHE YYHFLGT QS+D+LCW+D +
Sbjct: 181 SSISWTVDGKGFFYSRYPAPKEVGTLDAGTETNANLYHEVYYHFLGTDQSDDVLCWRDQD 240
Query: 241 HPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLID 300
HPKY+FS VT+DG+Y+VM IEE CDPVNK YYC +SALP GLEGFK ++ LLPF KLID
Sbjct: 241 HPKYLFSASVTDDGKYVVMEIEEGCDPVNKFYYCKISALPNGLEGFKGKNDLLPFTKLID 300
Query: 301 GFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNL 360
FDAQY IANDDT+FTF+TNK+APKYK++RVDL +P W E++PE+E+DVLESA AVN
Sbjct: 301 DFDAQYHDIANDDTLFTFITNKNAPKYKLVRVDLNDPTVWTELLPESEKDVLESACAVNG 360
Query: 361 NQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGI 420
+QMIVSYLSDVKYVLQIRDLK+GSLLHQLPI+IG+V ISARREDS++FI F+SFL PGI
Sbjct: 361 DQMIVSYLSDVKYVLQIRDLKSGSLLHQLPIDIGTVYGISARREDSLIFIGFSSFLTPGI 420
Query: 421 VYQCNLKTETPEMKIFRETIIPGFDRSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGS 480
+YQCNL++ TP++KIFRE +PGF+RSEF+V QVFV S DG T IPMFIV++KNI DGS
Sbjct: 421 IYQCNLESGTPDLKIFREIAVPGFERSEFNVDQVFVRSNDG-TNIPMFIVARKNIVFDGS 479
Query: 481 HPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQN 540
HPCLLYGYGGFNI++TP FSVSRT+L RHLGAVFCIANIRGGGEYGEEWHK G+LAKKQN
Sbjct: 480 HPCLLYGYGGFNINLTPYFSVSRTVLARHLGAVFCIANIRGGGEYGEEWHKAGSLAKKQN 539
Query: 541 CFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLR 600
CFDDFIS +EYLISAGYTQ KLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLR
Sbjct: 540 CFDDFISCAEYLISAGYTQPSKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLR 599
Query: 601 YHKFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHD 660
+HKFTIGHAW SD+GCS+ EEEF WLIKYSPLHNV+RPWEQ+PD+ QYPST+LLTADHD
Sbjct: 600 FHKFTIGHAWTSDYGCSDNEEEFKWLIKYSPLHNVKRPWEQHPDRLLQYPSTMLLTADHD 659
Query: 661 DRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYG 720
DRVVPLHSLKLLATMQY+LCTSLE SPQTNPI+GRIE KAGHG G PTQKMIDEA+DRY
Sbjct: 660 DRVVPLHSLKLLATMQYILCTSLEKSPQTNPIVGRIECKAGHGAGRPTQKMIDEASDRYA 719
Query: 721 FMAKMLGASWVE 732
FMAKML A+W++
Sbjct: 720 FMAKMLAATWID 731
|
Source: Cucumis melo subsp. melo Species: Cucumis melo Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|371927101|gb|AEX58648.1| prolyl oligopeptidase [Coffea arabica] | Back alignment and taxonomy information |
|---|
Score = 1183 bits (3060), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 550/732 (75%), Positives = 637/732 (87%), Gaps = 1/732 (0%)
Query: 1 MASLSGIDESLQYPVARRDESVVDDYHGVKIVDPYRWLEDPDAEEVKDFVQKQVELTDSV 60
M SLS +DE LQYP ARRD+SVVD+YHGV + DPYRWLEDPD+EE K+FV+KQV+LTDSV
Sbjct: 1 MGSLSVLDEQLQYPAARRDDSVVDNYHGVPVSDPYRWLEDPDSEETKEFVEKQVKLTDSV 60
Query: 61 LKNCDVRDKLREKITKLFDSPRYDAPFKRGNKYFYFHNTGLQPQSVLYVQDSLDAKAKVL 120
LK C+ R+KLREKIT LFD PRYDAPF+ NKYFYFHNTGLQPQSVLYVQD LD K +VL
Sbjct: 61 LKTCETREKLREKITALFDFPRYDAPFRAANKYFYFHNTGLQPQSVLYVQDGLDGKPEVL 120
Query: 121 LDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWFKF 180
LDPNTLSDDGT AL +VSEDA+YLAY +S SGSDW TI+++RI+D+ V D +SW KF
Sbjct: 121 LDPNTLSDDGTVALRAYAVSEDAEYLAYGISSSGSDWVTIQVLRIQDKHVLPDTVSWVKF 180
Query: 181 SSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPE 240
S+I+WTHDSKGFFYSRYPAPKEG ++DAGTET++NL HE YYHFL T QSEDILCWKDP+
Sbjct: 181 SNISWTHDSKGFFYSRYPAPKEGDNLDAGTETNANLNHELYYHFLATDQSEDILCWKDPD 240
Query: 241 HPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLID 300
+PK+ S VTEDGQY+++ E CDPVNKVYYCDLSALP+GLE +K+ + LLPFVKL+D
Sbjct: 241 NPKHTRSASVTEDGQYVLLYTFETCDPVNKVYYCDLSALPDGLEIYKETNNLLPFVKLVD 300
Query: 301 GFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNL 360
FDA Y +AND +VFTF TNKDAP+YK++RVDLK P W EV+ E+E+DVLES AVN
Sbjct: 301 SFDASYLDVANDGSVFTFRTNKDAPRYKLVRVDLKVPTSWTEVLQESEKDVLESVVAVNG 360
Query: 361 NQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGI 420
+Q++VSYLSDVK VLQIRDLK GSLLH LP++IG+V ISARR+D++VFI FTSFL+PGI
Sbjct: 361 DQIVVSYLSDVKNVLQIRDLKTGSLLHHLPVDIGTVCQISARRKDNIVFIHFTSFLVPGI 420
Query: 421 VYQCNLKTETPEMKIFRETIIPGFDRSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGS 480
+Y+CNL PE+ IFRE I+PGFDRS+F V+QVFVPSKDG T IPMF+VSKK+I LDGS
Sbjct: 421 IYKCNLGGGAPEISIFREIIVPGFDRSQFVVNQVFVPSKDG-TLIPMFVVSKKDISLDGS 479
Query: 481 HPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQN 540
+PCLLY YGGF+IS+TPSFSVSR ++ RHL A+FCIANIRGGGEYGEEWHK G+LAKKQN
Sbjct: 480 NPCLLYAYGGFDISITPSFSVSRIVIARHLDAIFCIANIRGGGEYGEEWHKAGSLAKKQN 539
Query: 541 CFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLR 600
CFDDF S ++YLIS GYTQ RKLCIEGGSNGGLLVGA INQRPDLFGCALAHVGVMDMLR
Sbjct: 540 CFDDFASCAKYLISTGYTQPRKLCIEGGSNGGLLVGASINQRPDLFGCALAHVGVMDMLR 599
Query: 601 YHKFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHD 660
+HKFTIGHAW SD+GCSE+E+EF+WL KYSPLHNVRRPWEQ+PD+ QYP+T+LLTADHD
Sbjct: 600 FHKFTIGHAWTSDYGCSEKEKEFHWLFKYSPLHNVRRPWEQSPDQVSQYPATMLLTADHD 659
Query: 661 DRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYG 720
DRVVPLHSLK LAT+QY LCT LE+SPQTNPII RIERKAGHG G PTQKMIDEAADRY
Sbjct: 660 DRVVPLHSLKFLATLQYELCTGLESSPQTNPIISRIERKAGHGAGRPTQKMIDEAADRYA 719
Query: 721 FMAKMLGASWVE 732
FMAK+LGA+WV+
Sbjct: 720 FMAKVLGATWVD 731
|
Source: Coffea arabica Species: Coffea arabica Genus: Coffea Family: Rubiaceae Order: Gentianales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 732 | ||||||
| TAIR|locus:2199814 | 795 | AT1G76140 [Arabidopsis thalian | 0.998 | 0.919 | 0.75 | 3.59999944711e-318 | |
| TAIR|locus:2012888 | 731 | AT1G20380 [Arabidopsis thalian | 0.998 | 1.0 | 0.739 | 1.2e-312 | |
| UNIPROTKB|F1NUS2 | 710 | PREP "Uncharacterized protein" | 0.965 | 0.995 | 0.561 | 6.3e-227 | |
| UNIPROTKB|P48147 | 710 | PREP "Prolyl endopeptidase" [H | 0.963 | 0.992 | 0.546 | 4e-225 | |
| RGD|620841 | 710 | Prep "prolyl endopeptidase" [R | 0.964 | 0.994 | 0.551 | 8.3e-225 | |
| UNIPROTKB|O70196 | 710 | Prep "Prolyl endopeptidase" [R | 0.964 | 0.994 | 0.551 | 8.3e-225 | |
| MGI|MGI:1270863 | 710 | Prep "prolyl endopeptidase" [M | 0.964 | 0.994 | 0.547 | 2.8e-224 | |
| ZFIN|ZDB-GENE-050522-14 | 709 | prep "prolyl endopeptidase" [D | 0.964 | 0.995 | 0.554 | 4.6e-224 | |
| UNIPROTKB|P23687 | 710 | PREP "Prolyl endopeptidase" [S | 0.963 | 0.992 | 0.546 | 1.5e-223 | |
| UNIPROTKB|Q9XTA2 | 710 | PREP "Prolyl endopeptidase" [B | 0.964 | 0.994 | 0.546 | 6.7e-223 |
| TAIR|locus:2199814 AT1G76140 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3052 (1079.4 bits), Expect = 3.6e-318, P = 3.6e-318
Identities = 549/732 (75%), Positives = 633/732 (86%)
Query: 1 MASLSGIDESLQYPVARRDESVVDDYHGVKIVDPYRWLEDPDAEEVKDFVQKQVELTDSV 60
M S S E LQYP RRD+SVVDDYHGVKI DPYRWLEDPDAEEVK+FVQ QV+LTDSV
Sbjct: 65 MGSSSVFGEQLQYPATRRDDSVVDDYHGVKIGDPYRWLEDPDAEEVKEFVQSQVKLTDSV 124
Query: 61 LKNCDVRDKLREKITKLFDSPRYDAPFKRGNKYFYFHNTGLQPQSVLYVQDSLDAKAKVL 120
L+ C+ ++KLR+ ITKL D PRYD+PF++G+KYFYFHNTGLQ QSVLY+QD+LDA+ +VL
Sbjct: 125 LEKCETKEKLRQNITKLIDHPRYDSPFRQGDKYFYFHNTGLQAQSVLYMQDNLDAEPEVL 184
Query: 121 LDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWFKF 180
LDPNTLSDDGT AL SVSEDAKYLAY LS SGSDW TIKLM+IED+ VE D LSW KF
Sbjct: 185 LDPNTLSDDGTVALNTFSVSEDAKYLAYGLSSSGSDWVTIKLMKIEDKKVEPDTLSWVKF 244
Query: 181 SSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPE 240
+ I WTHDSKGFFY RYPAPKEG+D+DAGTET+SNLYHE YYHF+GT QS+DILCW+D E
Sbjct: 245 TGITWTHDSKGFFYGRYPAPKEGEDIDAGTETNSNLYHELYYHFIGTDQSQDILCWRDNE 304
Query: 241 HPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLID 300
+PKY+F VT+DG+YL+M I E+CDPVNK+YYCD+++L GLE F+ LPF+KL+D
Sbjct: 305 NPKYMFGAEVTDDGKYLIMSIGESCDPVNKLYYCDMTSLSGGLESFRGSSSFLPFIKLVD 364
Query: 301 GFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNL 360
FDAQY VI+ND+T+FTFLTNKDAPKYK++RVDLKEPN W +V+ E E+DVL SA AVN
Sbjct: 365 TFDAQYSVISNDETLFTFLTNKDAPKYKLVRVDLKEPNSWTDVVEEHEKDVLASACAVNG 424
Query: 361 NQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGI 420
N ++ Y+SDVK++LQIRDLK+GSLLHQLP++IGSV+ +SARR+D+ F SFTSFL PG+
Sbjct: 425 NHLVACYMSDVKHILQIRDLKSGSLLHQLPLDIGSVSDVSARRKDNTFFFSFTSFLTPGV 484
Query: 421 VYQCNLKTETPEMKIFRETIIPGFDRSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGS 480
+Y+C+L E+PE+K+FRE +PGFDR F QVF PSKDG TKIPMFIV+KK+IKLDGS
Sbjct: 485 IYKCDLANESPEVKVFREVTVPGFDREAFQAIQVFYPSKDG-TKIPMFIVAKKDIKLDGS 543
Query: 481 HPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQN 540
HPCLLY YGGFNIS+TPSFS SR +L +HLG VFC ANIRGGGEYGEEWHK G+LAKKQN
Sbjct: 544 HPCLLYAYGGFNISITPSFSASRIVLSKHLGVVFCFANIRGGGEYGEEWHKAGSLAKKQN 603
Query: 541 CFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLR 600
CFDDFIS +EYL+SAGYTQ KLCIEGGSNGGLLVGACINQRPDL+GCALAHVGVMDMLR
Sbjct: 604 CFDDFISGAEYLVSAGYTQPSKLCIEGGSNGGLLVGACINQRPDLYGCALAHVGVMDMLR 663
Query: 601 YHKFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHD 660
+HKFTIGHAW SD+GCSE EEEF+WLIKYSPLHNV+RPWEQ D QYPST+LLTADHD
Sbjct: 664 FHKFTIGHAWTSDYGCSENEEEFHWLIKYSPLHNVKRPWEQQTDHLVQYPSTMLLTADHD 723
Query: 661 DRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYG 720
DRVVPLHSLKLLAT+Q+VLCTSL+NSPQ NPIIGRIE KAGHG G PTQKMIDEAADRY
Sbjct: 724 DRVVPLHSLKLLATLQHVLCTSLDNSPQMNPIIGRIEVKAGHGAGRPTQKMIDEAADRYS 783
Query: 721 FMAKMLGASWVE 732
FMAKM+ ASW E
Sbjct: 784 FMAKMVNASWTE 795
|
|
| TAIR|locus:2012888 AT1G20380 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2999 (1060.8 bits), Expect = 1.2e-312, P = 1.2e-312
Identities = 541/732 (73%), Positives = 633/732 (86%)
Query: 1 MASLSGIDESLQYPVARRDESVVDDYHGVKIVDPYRWLEDPDAEEVKDFVQKQVELTDSV 60
M SL +E LQYP ARRDESVV+DYHGVK+ DPYRWLEDPDAEEVK+FV+KQV+L+DSV
Sbjct: 1 MGSLPAFEERLQYPTARRDESVVEDYHGVKVSDPYRWLEDPDAEEVKEFVEKQVQLSDSV 60
Query: 61 LKNCDVRDKLREKITKLFDSPRYDAPFKRGNKYFYFHNTGLQPQSVLYVQDSLDAKAKVL 120
LK+C+ ++KL +K TK D PR+D PFKRGN YFYFHN+GLQ QSVL+VQD L+++A++L
Sbjct: 61 LKSCETKEKLHDKFTKFIDYPRFDTPFKRGNSYFYFHNSGLQAQSVLHVQDDLESEAEIL 120
Query: 121 LDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWFKF 180
LDPNTLSDDGT +L +S+SEDAKYLAY LS SGSDW TIK+M+IED+ VE D+LSW KF
Sbjct: 121 LDPNTLSDDGTVSLNTLSISEDAKYLAYGLSSSGSDWVTIKVMKIEDKKVEPDSLSWVKF 180
Query: 181 SSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPE 240
S I WTHD KGFFYSRYPAP+EG+ +DAGTET+SNLYHE YYHFLGT QSED+LCW+D +
Sbjct: 181 SGITWTHDGKGFFYSRYPAPREGEKIDAGTETNSNLYHELYYHFLGTDQSEDVLCWRDQD 240
Query: 241 HPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLID 300
+PK++F VT+DG+YL+M IEE CDPVNKVY+CDLS LP+GLEGF+ + LLPFVKLID
Sbjct: 241 NPKHMFGSKVTDDGKYLIMSIEEGCDPVNKVYHCDLSLLPKGLEGFRGSNTLLPFVKLID 300
Query: 301 GFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNL 360
FDAQY IAND+T+FTFLTNKDAPKYK++RVDLKEP+ W +VI E E+DVL +A+AVN
Sbjct: 301 TFDAQYIAIANDETLFTFLTNKDAPKYKVVRVDLKEPSSWTDVIAEHEKDVLSTASAVNG 360
Query: 361 NQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGI 420
+Q++VSY+SDVK++LQIRDLK+GSLLH LP++IGSV + ARR+D+ F FTSFL PG+
Sbjct: 361 DQLVVSYMSDVKHILQIRDLKSGSLLHGLPVDIGSVCGVFARRKDTTFFFRFTSFLTPGV 420
Query: 421 VYQCNLKTETPEMKIFRETIIPGFDRSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGS 480
+Y C+L E PE+ +FRE +PGFDR+ F V QVF PSKDG T IPMFIV++K+IKLDGS
Sbjct: 421 IYICDLSHEAPEVTVFREIGVPGFDRTAFQVTQVFYPSKDG-TDIPMFIVARKDIKLDGS 479
Query: 481 HPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQN 540
HPCLLY YGGF+IS+TP FS +R +L RHLG VFC ANIRGGGEYGEEWHK GALA KQN
Sbjct: 480 HPCLLYAYGGFSISMTPFFSATRIVLGRHLGTVFCFANIRGGGEYGEEWHKSGALANKQN 539
Query: 541 CFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLR 600
CFDDFIS +EYL+SAGYTQ RKLCIEGGSNGG+LVGACINQRPDLFGCALAHVGVMDMLR
Sbjct: 540 CFDDFISGAEYLVSAGYTQPRKLCIEGGSNGGILVGACINQRPDLFGCALAHVGVMDMLR 599
Query: 601 YHKFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHD 660
+HKFTIGHAW S+FGCS++EEEF+WLIKYSPLHNV+RPWEQ D FQYPST+LLTADHD
Sbjct: 600 FHKFTIGHAWTSEFGCSDKEEEFHWLIKYSPLHNVKRPWEQKTDLFFQYPSTMLLTADHD 659
Query: 661 DRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYG 720
DRVVPLHS KLLATMQY L SLENSPQTNPII RIE KAGHG G PTQKMIDEAADRY
Sbjct: 660 DRVVPLHSYKLLATMQYELGLSLENSPQTNPIIARIEVKAGHGAGRPTQKMIDEAADRYS 719
Query: 721 FMAKMLGASWVE 732
FMAKM+ ASW++
Sbjct: 720 FMAKMVDASWID 731
|
|
| UNIPROTKB|F1NUS2 PREP "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 2190 (776.0 bits), Expect = 6.3e-227, P = 6.3e-227
Identities = 408/726 (56%), Positives = 524/726 (72%)
Query: 9 ESLQYPVARRDESVVDDYHGVKIVDPYRWLEDPDAEEVKDFVQKQVELTDSVLKNCDVRD 68
++ QYP RDE+ V DYHG +I DPY WLEDPD+E+ K FV+ Q +LT L+ C VR
Sbjct: 2 QAFQYPEVYRDEAAVLDYHGHQISDPYCWLEDPDSEQTKAFVEAQNKLTVPFLEQCPVRG 61
Query: 69 KLREKITKLFDSPRYDAPFKRGNKYFYFHNTGLQPQSVLYVQDSLDAKAKVLLDPNTLSD 128
+E++T+L+D P+Y FK+G +YF+F+NTGLQ Q VLYVQDSLDA AKV LDPN LSD
Sbjct: 62 LFKERMTELYDYPKYSCHFKKGKRYFHFYNTGLQNQRVLYVQDSLDADAKVFLDPNKLSD 121
Query: 129 DGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWFKFSSIAWTHD 188
DGT AL + SED +Y AY LS SGSDW TIK M++E D L KFS +AWTHD
Sbjct: 122 DGTVALRGYAFSEDGEYFAYGLSSSGSDWVTIKFMKVEGPEELPDTLERVKFSCMAWTHD 181
Query: 189 SKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSG 248
KG FY+ YP ++GK D GTET +NL+ + +YH LGT QSEDILC + P+ PK++
Sbjct: 182 GKGMFYNCYPK-QDGKS-D-GTETSTNLHQKLHYHVLGTNQSEDILCAEFPDEPKWMGGA 238
Query: 249 HVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEV 308
+++DG+Y+++ I E CDPVN+++YCDL +G+ G +L +VKLID F+A+YE
Sbjct: 239 EISDDGRYVLLSIREGCDPVNRLWYCDLQKESQGISG------ILQWVKLIDNFEAEYEY 292
Query: 309 IANDDTVFTFLTNKDAPKYKIIRVDLKEPND--WFEVIPEAERDVLESATAVNLNQMIVS 366
+ N+ TVFTF TN+ +P Y++I +D +P + W +IPE ERDVLE V N +++
Sbjct: 293 VTNEGTVFTFKTNRHSPNYRLINIDFSDPEESKWKVLIPEHERDVLEWVACVRSNFLVLC 352
Query: 367 YLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNL 426
YL DVK +LQ+ DL G+ L P+++GS+ S +++D+ +F FTSFL PGI+Y C+L
Sbjct: 353 YLHDVKNILQLHDLATGAHLKTFPLDVGSIVGYSGQKKDNEIFYQFTSFLSPGIIYHCDL 412
Query: 427 KTETPEMKIFRETIIPGFDRSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLY 486
E E ++FRE + GFD S + QVF PSKDG TKIPMFI+ KK IKLDGSHP LY
Sbjct: 413 TKEELEPRVFREVTVKGFDPSVYQTIQVFYPSKDG-TKIPMFIIHKKGIKLDGSHPAFLY 471
Query: 487 GYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFI 546
GYGGFNIS+TPS+SVSR I +RHLG V +ANIRGGGEYGE WHKGG LA KQNCFDDF
Sbjct: 472 GYGGFNISITPSYSVSRLIFVRHLGGVLAVANIRGGGEYGETWHKGGILANKQNCFDDFQ 531
Query: 547 SASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTI 606
A++YLI GYT +KL I GGSNGGLLV AC NQRPDLFGC +A VGVMDML++HK+TI
Sbjct: 532 YAAKYLIREGYTSPKKLTINGGSNGGLLVAACANQRPDLFGCVIAQVGVMDMLKFHKYTI 591
Query: 607 GHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPL 666
GHAW +D+GCS+ +E+F WL KYSPLHNV+ P E QYP+TLLLTADHDDRVVPL
Sbjct: 592 GHAWTTDYGCSDHKEQFEWLCKYSPLHNVKLPEEDG----IQYPATLLLTADHDDRVVPL 647
Query: 667 HSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKML 726
HSLK +AT+QYV+ S + QTNP++ ++ KAGHG G PT K+I+E +D + F+A+ L
Sbjct: 648 HSLKFIATLQYVVGRSRK---QTNPLLIHVDTKAGHGAGKPTAKVIEEVSDMFAFIARCL 704
Query: 727 GASWVE 732
W+E
Sbjct: 705 NLDWIE 710
|
|
| UNIPROTKB|P48147 PREP "Prolyl endopeptidase" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 2173 (770.0 bits), Expect = 4.0e-225, P = 4.0e-225
Identities = 396/724 (54%), Positives = 523/724 (72%)
Query: 10 SLQYPVARRDESVVDDYHGVKIVDPYRWLEDPDAEEVKDFVQKQVELTDSVLKNCDVRDK 69
SLQYP RDE+ V DYHG KI DPY WLEDPD+E+ K FV+ Q ++T L+ C +R
Sbjct: 3 SLQYPDVYRDETAVQDYHGHKICDPYAWLEDPDSEQTKAFVEAQNKITVPFLEQCPIRGL 62
Query: 70 LREKITKLFDSPRYDAPFKRGNKYFYFHNTGLQPQSVLYVQDSLDAKAKVLLDPNTLSDD 129
+E++T+L+D P+Y FK+G +YFYF+NTGLQ Q VLYVQDSL+ +A+V LDPN LSDD
Sbjct: 63 YKERMTELYDYPKYSCHFKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDD 122
Query: 130 GTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWFKFSSIAWTHDS 189
GT AL + SED +Y AY LS SGSDW TIK M+++ D L KFS +AWTHD
Sbjct: 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDG 182
Query: 190 KGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGH 249
KG FY+ YP ++GK D GTET +NL+ + YYH LGT QSEDILC + P+ PK++
Sbjct: 183 KGMFYNSYPQ-QDGKS-D-GTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAE 239
Query: 250 VTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVI 309
+++DG+Y+++ I E CDPVN+++YCDL G+ G +L +VKLID F+ +Y+ +
Sbjct: 240 LSDDGRYVLLSIREGCDPVNRLWYCDLQQESSGIAG------ILKWVKLIDNFEGEYDYV 293
Query: 310 ANDDTVFTFLTNKDAPKYKIIRVDLKEPND--WFEVIPEAERDVLESATAVNLNQMIVSY 367
N+ TVFTF TN+ +P Y++I +D ++P + W ++PE E+DVLE V N +++ Y
Sbjct: 294 TNEGTVFTFKTNRQSPNYRVINIDFRDPEESKWKVLVPEHEKDVLEWIACVRSNFLVLCY 353
Query: 368 LSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLK 427
L DVK +LQ+ DL G+LL P+++GS+ S +++D+ +F FTSFL PGI+Y C+L
Sbjct: 354 LHDVKNILQLHDLTTGALLKTFPLDVGSIVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLT 413
Query: 428 TETPEMKIFRETIIPGFDRSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYG 487
E E ++FRE + G D S++ Q+F PSKDG TKIPMFIV KK IKLDGSHP LYG
Sbjct: 414 KEELEPRVFREVTVKGIDASDYQTVQIFYPSKDG-TKIPMFIVHKKGIKLDGSHPAFLYG 472
Query: 488 YGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFIS 547
YGGFNIS+TP++SVSR I +RH+G + +ANIRGGGEYGE WHKGG LA KQNCFDDF
Sbjct: 473 YGGFNISITPNYSVSRLIFVRHMGGILAVANIRGGGEYGETWHKGGILANKQNCFDDFQC 532
Query: 548 ASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIG 607
A+EYLI GYT ++L I GGSNGGLLV AC NQRPDLFGC +A VGVMDML++HK+TIG
Sbjct: 533 AAEYLIKEGYTSPKRLTINGGSNGGLLVAACANQRPDLFGCVIAQVGVMDMLKFHKYTIG 592
Query: 608 HAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLH 667
HAW +D+GCS+ ++ F WL+KYSPLHNV+ P + D QYPS LLLTADHDDRVVPLH
Sbjct: 593 HAWTTDYGCSDSKQHFEWLVKYSPLHNVKLP--EADD--IQYPSMLLLTADHDDRVVPLH 648
Query: 668 SLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLG 727
SLK +AT+QY++ S + Q+NP++ ++ KAGHG G PT K+I+E +D + F+A+ L
Sbjct: 649 SLKFIATLQYIVGRSRK---QSNPLLIHVDTKAGHGAGKPTAKVIEEVSDMFAFIARCLN 705
Query: 728 ASWV 731
W+
Sbjct: 706 VDWI 709
|
|
| RGD|620841 Prep "prolyl endopeptidase" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 2170 (768.9 bits), Expect = 8.3e-225, P = 8.3e-225
Identities = 400/725 (55%), Positives = 527/725 (72%)
Query: 10 SLQYPVARRDESVVDDYHGVKIVDPYRWLEDPDAEEVKDFVQKQVELTDSVLKNCDVRDK 69
S QYP RDE+ V DYHG KI DPY WLEDPD+E+ K FV+ Q ++T L+ C +R
Sbjct: 3 SFQYPDVYRDETSVQDYHGHKICDPYAWLEDPDSEQTKAFVEAQNKITVPFLEQCPIRGL 62
Query: 70 LREKITKLFDSPRYDAPFKRGNKYFYFHNTGLQPQSVLYVQDSLDAKAKVLLDPNTLSDD 129
+E++T+L+D P+Y FK+G +YFYF+NTGLQ Q VLYVQDSL+ +A+V LDPNTLSDD
Sbjct: 63 YKERMTELYDYPKYSCHFKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNTLSDD 122
Query: 130 GTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWFKFSSIAWTHDS 189
GT AL + SED +Y AY LS SGSDW TIK M+++ D L KF+ +AWTHD
Sbjct: 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFTCMAWTHDG 182
Query: 190 KGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGH 249
KG FY+ YP ++GK D GTET +NL+ + YH LGT QSED+LC + P+ PK++
Sbjct: 183 KGMFYNSYPQ-QDGKS-D-GTETSTNLHQKLCYHVLGTDQSEDVLCAEFPDEPKWMGGAE 239
Query: 250 VTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVI 309
+++DG+Y+++ I E CDPVN+++YCDL +G G +G+L +VKLID F+ +Y+ I
Sbjct: 240 LSDDGRYVLLSIWEGCDPVNRLWYCDLQ---QGSNGI---NGILKWVKLIDNFEGEYDYI 293
Query: 310 ANDDTVFTFLTNKDAPKYKIIRVDLKEPND--WFEVIPEAERDVLESATAVNLNQMIVSY 367
N+ TVFTF TN+++P Y++I +D +P++ W ++PE E+DVLE V N +++ Y
Sbjct: 294 TNEGTVFTFKTNRNSPNYRLINIDFTDPDESKWKVLVPEHEKDVLEWVACVRSNFLVLCY 353
Query: 368 LSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLK 427
L +VK +LQ+ DL G+LL P+++GSV S R++DS +F FTSFL PG++Y C+L
Sbjct: 354 LRNVKNILQLHDLTTGALLKTFPLDVGSVVGYSGRKKDSEIFYQFTSFLSPGVIYHCDLT 413
Query: 428 TETPEMKIFRETIIPGFDRSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYG 487
E E ++FRE + G D S++ QVF PSKDG TKIPMFIV KK IKLDGSHP LYG
Sbjct: 414 REELEPRVFREVTVKGIDASDYQTIQVFYPSKDG-TKIPMFIVHKKGIKLDGSHPAFLYG 472
Query: 488 YGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFIS 547
YGGFNIS+TP++SVSR I +RH+G V +ANIRGGGEYGE WHKGG LA KQNCFDDF
Sbjct: 473 YGGFNISITPNYSVSRLIFVRHMGGVLAVANIRGGGEYGETWHKGGILANKQNCFDDFQC 532
Query: 548 ASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIG 607
A+EYLI GYT S++L I GGSNGGLLV AC NQRPDLFGC +A VGVMDML++HKFTIG
Sbjct: 533 AAEYLIKEGYTTSKRLTINGGSNGGLLVAACANQRPDLFGCVIAQVGVMDMLKFHKFTIG 592
Query: 608 HAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLH 667
HAW +D+GCS+ ++ F WL+KYSPLHNV+ P + D QYPS LLLTADHDDRVVPLH
Sbjct: 593 HAWTTDYGCSDSKQHFEWLLKYSPLHNVKLP--EADD--IQYPSMLLLTADHDDRVVPLH 648
Query: 668 SLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLG 727
SLK +AT+QY++ S + Q+NP++ ++ KAGHG G PT K+I+E +D + F+A+ L
Sbjct: 649 SLKFIATLQYIVGRSRK---QSNPLLIHVDTKAGHGPGKPTAKVIEEVSDMFAFIARCLN 705
Query: 728 ASWVE 732
W++
Sbjct: 706 IEWIQ 710
|
|
| UNIPROTKB|O70196 Prep "Prolyl endopeptidase" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 2170 (768.9 bits), Expect = 8.3e-225, P = 8.3e-225
Identities = 400/725 (55%), Positives = 527/725 (72%)
Query: 10 SLQYPVARRDESVVDDYHGVKIVDPYRWLEDPDAEEVKDFVQKQVELTDSVLKNCDVRDK 69
S QYP RDE+ V DYHG KI DPY WLEDPD+E+ K FV+ Q ++T L+ C +R
Sbjct: 3 SFQYPDVYRDETSVQDYHGHKICDPYAWLEDPDSEQTKAFVEAQNKITVPFLEQCPIRGL 62
Query: 70 LREKITKLFDSPRYDAPFKRGNKYFYFHNTGLQPQSVLYVQDSLDAKAKVLLDPNTLSDD 129
+E++T+L+D P+Y FK+G +YFYF+NTGLQ Q VLYVQDSL+ +A+V LDPNTLSDD
Sbjct: 63 YKERMTELYDYPKYSCHFKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNTLSDD 122
Query: 130 GTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWFKFSSIAWTHDS 189
GT AL + SED +Y AY LS SGSDW TIK M+++ D L KF+ +AWTHD
Sbjct: 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFTCMAWTHDG 182
Query: 190 KGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGH 249
KG FY+ YP ++GK D GTET +NL+ + YH LGT QSED+LC + P+ PK++
Sbjct: 183 KGMFYNSYPQ-QDGKS-D-GTETSTNLHQKLCYHVLGTDQSEDVLCAEFPDEPKWMGGAE 239
Query: 250 VTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVI 309
+++DG+Y+++ I E CDPVN+++YCDL +G G +G+L +VKLID F+ +Y+ I
Sbjct: 240 LSDDGRYVLLSIWEGCDPVNRLWYCDLQ---QGSNGI---NGILKWVKLIDNFEGEYDYI 293
Query: 310 ANDDTVFTFLTNKDAPKYKIIRVDLKEPND--WFEVIPEAERDVLESATAVNLNQMIVSY 367
N+ TVFTF TN+++P Y++I +D +P++ W ++PE E+DVLE V N +++ Y
Sbjct: 294 TNEGTVFTFKTNRNSPNYRLINIDFTDPDESKWKVLVPEHEKDVLEWVACVRSNFLVLCY 353
Query: 368 LSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLK 427
L +VK +LQ+ DL G+LL P+++GSV S R++DS +F FTSFL PG++Y C+L
Sbjct: 354 LRNVKNILQLHDLTTGALLKTFPLDVGSVVGYSGRKKDSEIFYQFTSFLSPGVIYHCDLT 413
Query: 428 TETPEMKIFRETIIPGFDRSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYG 487
E E ++FRE + G D S++ QVF PSKDG TKIPMFIV KK IKLDGSHP LYG
Sbjct: 414 REELEPRVFREVTVKGIDASDYQTIQVFYPSKDG-TKIPMFIVHKKGIKLDGSHPAFLYG 472
Query: 488 YGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFIS 547
YGGFNIS+TP++SVSR I +RH+G V +ANIRGGGEYGE WHKGG LA KQNCFDDF
Sbjct: 473 YGGFNISITPNYSVSRLIFVRHMGGVLAVANIRGGGEYGETWHKGGILANKQNCFDDFQC 532
Query: 548 ASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIG 607
A+EYLI GYT S++L I GGSNGGLLV AC NQRPDLFGC +A VGVMDML++HKFTIG
Sbjct: 533 AAEYLIKEGYTTSKRLTINGGSNGGLLVAACANQRPDLFGCVIAQVGVMDMLKFHKFTIG 592
Query: 608 HAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLH 667
HAW +D+GCS+ ++ F WL+KYSPLHNV+ P + D QYPS LLLTADHDDRVVPLH
Sbjct: 593 HAWTTDYGCSDSKQHFEWLLKYSPLHNVKLP--EADD--IQYPSMLLLTADHDDRVVPLH 648
Query: 668 SLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLG 727
SLK +AT+QY++ S + Q+NP++ ++ KAGHG G PT K+I+E +D + F+A+ L
Sbjct: 649 SLKFIATLQYIVGRSRK---QSNPLLIHVDTKAGHGPGKPTAKVIEEVSDMFAFIARCLN 705
Query: 728 ASWVE 732
W++
Sbjct: 706 IEWIQ 710
|
|
| MGI|MGI:1270863 Prep "prolyl endopeptidase" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 2165 (767.2 bits), Expect = 2.8e-224, P = 2.8e-224
Identities = 397/725 (54%), Positives = 524/725 (72%)
Query: 10 SLQYPVARRDESVVDDYHGVKIVDPYRWLEDPDAEEVKDFVQKQVELTDSVLKNCDVRDK 69
S QYP RDE+ V +YHG KI DPY WLEDPD+E+ K FV+ Q ++T L+ C +R
Sbjct: 3 SFQYPDVYRDETSVQEYHGHKICDPYSWLEDPDSEQTKAFVEAQNKITVPFLEQCPIRGL 62
Query: 70 LREKITKLFDSPRYDAPFKRGNKYFYFHNTGLQPQSVLYVQDSLDAKAKVLLDPNTLSDD 129
+E++T+L+D P+Y FK+G +YFYF+NTGLQ Q VLYVQDSL+ +A+V LDPNTLSDD
Sbjct: 63 YKERMTELYDYPKYSCHFKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNTLSDD 122
Query: 130 GTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWFKFSSIAWTHDS 189
GT AL + SED +Y AY LS SGSDW TIK M+++ D L KF+ +AWTHD
Sbjct: 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFTCMAWTHDG 182
Query: 190 KGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGH 249
KG FY+ YP ++GK D GTET +NL+ + YH LGT QSEDILC + P+ PK++
Sbjct: 183 KGMFYNSYPQ-QDGKS-D-GTETSTNLHQKLCYHVLGTDQSEDILCAEFPDEPKWMGGAE 239
Query: 250 VTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVI 309
+++DG+Y+++ I E CDPVN+++YCDL P G+ G +L +VKLID F+ +Y+ +
Sbjct: 240 LSDDGRYVLLSIWEGCDPVNRLWYCDLQQEPNGITG------ILKWVKLIDNFEGEYDYV 293
Query: 310 ANDDTVFTFLTNKDAPKYKIIRVDLKEPND--WFEVIPEAERDVLESATAVNLNQMIVSY 367
N+ TVFTF TN+++P Y++I +D +P++ W ++PE E+DVLE V N +++ Y
Sbjct: 294 TNEGTVFTFKTNRNSPNYRLINIDFTDPDESKWKVLVPEHEKDVLEWVACVRSNFLVLCY 353
Query: 368 LSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLK 427
L DVK +LQ+ DL G+LL P+++GSV S R++DS +F FTSFL PG++Y C+L
Sbjct: 354 LHDVKNILQLHDLTTGALLKTFPLDVGSVVGYSGRKKDSEIFYQFTSFLSPGVIYHCDLT 413
Query: 428 TETPEMKIFRETIIPGFDRSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYG 487
E E +FRE + G D +++ Q+F PSKDG TKIPMFIV KK IKLDGSHP LYG
Sbjct: 414 KEELEPMVFREVTVKGIDAADYQTIQIFYPSKDG-TKIPMFIVHKKGIKLDGSHPAFLYG 472
Query: 488 YGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFIS 547
YGGFNIS+TP++SVSR I +RH+G V +ANIRGGGEYGE WHKGG LA KQNCFDDF
Sbjct: 473 YGGFNISITPNYSVSRLIFVRHMGGVLAVANIRGGGEYGETWHKGGILANKQNCFDDFQC 532
Query: 548 ASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIG 607
A+EYLI GYT ++L I GGSNGGLLV AC NQRPDLFGC +A VGVMDML++HKFTIG
Sbjct: 533 AAEYLIKEGYTSPKRLTINGGSNGGLLVAACANQRPDLFGCVIAQVGVMDMLKFHKFTIG 592
Query: 608 HAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLH 667
HAW +D+GCS+ ++ F WL+KYSPLHNV+ P + D QYPS LLLTADHDDRVVPLH
Sbjct: 593 HAWTTDYGCSDTKQHFEWLLKYSPLHNVKLP--EADD--IQYPSMLLLTADHDDRVVPLH 648
Query: 668 SLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLG 727
SLK +AT+QY++ S + Q+NP++ ++ KAGHG G PT K+I+E +D + F+A+ L
Sbjct: 649 SLKFIATLQYIVGRSRK---QSNPLLIHVDTKAGHGAGKPTAKVIEEVSDMFAFIARCLN 705
Query: 728 ASWVE 732
W++
Sbjct: 706 IEWIQ 710
|
|
| ZFIN|ZDB-GENE-050522-14 prep "prolyl endopeptidase" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 2163 (766.5 bits), Expect = 4.6e-224, P = 4.6e-224
Identities = 402/725 (55%), Positives = 526/725 (72%)
Query: 10 SLQYPVARRDESVVDDYHGVKIVDPYRWLEDPDAEEVKDFVQKQVELTDSVLKNCDVRDK 69
+ QYP RDESVVDDYHG KI DPY WLEDPD+E+ + FV Q +LT L+ C+ RD
Sbjct: 2 AFQYPNVYRDESVVDDYHGCKIPDPYSWLEDPDSEKTQAFVNAQNQLTLPFLEQCETRDL 61
Query: 70 LREKITKLFDSPRYDAPFKRGNKYFYFHNTGLQPQSVLYVQDSLDAKAKVLLDPNTLSDD 129
+E++T+L+D P+Y PFKRG++YF+F+NTGLQ QSV+YVQD+LDA+ V LDPNT S+D
Sbjct: 62 FKERMTELYDYPKYSCPFKRGDRYFHFYNTGLQNQSVMYVQDNLDAEPTVFLDPNTFSED 121
Query: 130 GTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWFKFSSIAWTHDS 189
GT AL S SED ++LAY S SGSDW I+ +R++ ++ D L KF+ ++WTHD
Sbjct: 122 GTVALRGYSFSEDGEFLAYGTSASGSDWVEIRFLRVDGAVLLEDRLERVKFTCMSWTHDG 181
Query: 190 KGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGH 249
KG FY+ YP +EGK D GTET +NL+ + YYH LGT QS+D+LC + P+ PK++
Sbjct: 182 KGLFYNSYPE-QEGKS-D-GTETSTNLHQKLYYHVLGTPQSQDVLCAEFPDEPKWMSGVE 238
Query: 250 VTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVI 309
V++DG+Y+++ I E CDPVN+++YCDL+ P+G+ G LLP+VKLID FDA+YE +
Sbjct: 239 VSDDGRYVLLSIREGCDPVNRLWYCDLNEEPQGITG------LLPWVKLIDNFDAEYEYV 292
Query: 310 ANDDTVFTFLTNKDAPKYKIIRVDLKEPN--DWFEVIPEAERDVLESATAVNLNQMIVSY 367
N+ TVFTF TN +AP+Y++I +D +P+ W E+IP+ ++DV+ AT + + V +
Sbjct: 293 TNEGTVFTFKTNLEAPQYRLINIDFTQPSVSQWKELIPQHDKDVIVFATCTFSSFLFVCF 352
Query: 368 LSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLK 427
L DVK VL++ L +G + P+++GS+ + R++DS +F SFTSFL P I+Y C+L
Sbjct: 353 LHDVKNVLKMFHLSSGEEIRTFPLDVGSIVGFTGRKKDSEIFYSFTSFLSPAIIYHCDLT 412
Query: 428 TETPEMKIFRETIIPGFDRSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYG 487
E + +FRE + GF+ +++ QVF PSKDG T+IPMFIV KK IK+DGSHP LYG
Sbjct: 413 MEPLQPHVFREVTVKGFNPADYQTTQVFYPSKDG-TQIPMFIVHKKGIKMDGSHPAFLYG 471
Query: 488 YGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFIS 547
YGGFNIS+TPS+SVSR I +RHLG V +ANIRGGGEYGE WHKGG LA KQNCF DF
Sbjct: 472 YGGFNISITPSYSVSRLIFIRHLGGVLAVANIRGGGEYGETWHKGGMLANKQNCFTDFQC 531
Query: 548 ASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIG 607
A+EYLI GYT +KL I GGSNGGLLV AC+NQRPDLFGCA+A VGVMDML++HKFTIG
Sbjct: 532 AAEYLIKEGYTSPKKLTINGGSNGGLLVAACVNQRPDLFGCAVAQVGVMDMLKFHKFTIG 591
Query: 608 HAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLH 667
HAW +DFGCSE +E+F WLIKYSPLHN++ P QYP+ LLLT DHDDRVVPLH
Sbjct: 592 HAWTTDFGCSEIKEQFDWLIKYSPLHNIQVPEGDG----VQYPAVLLLTGDHDDRVVPLH 647
Query: 668 SLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLG 727
SLK +AT+Q V+ + Q NP+ I+ K+GHG G PT K+I E AD Y F+A+ L
Sbjct: 648 SLKYIATLQNVIG---QCPGQKNPLFIYIDTKSGHGAGKPTSKVIQEVADTYAFIARCLN 704
Query: 728 ASWVE 732
SW+E
Sbjct: 705 LSWLE 709
|
|
| UNIPROTKB|P23687 PREP "Prolyl endopeptidase" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 2158 (764.7 bits), Expect = 1.5e-223, P = 1.5e-223
Identities = 396/724 (54%), Positives = 518/724 (71%)
Query: 10 SLQYPVARRDESVVDDYHGVKIVDPYRWLEDPDAEEVKDFVQKQVELTDSVLKNCDVRDK 69
S QYP RDE+ + DYHG K+ DPY WLEDPD+E+ K FV+ Q ++T L+ C +R
Sbjct: 3 SFQYPDVYRDETAIQDYHGHKVCDPYAWLEDPDSEQTKAFVEAQNKITVPFLEQCPIRGL 62
Query: 70 LREKITKLFDSPRYDAPFKRGNKYFYFHNTGLQPQSVLYVQDSLDAKAKVLLDPNTLSDD 129
+E++T+L+D P+Y FK+G +YFYF+NTGLQ Q VLYVQDSL+ +A+V LDPN LSDD
Sbjct: 63 YKERMTELYDYPKYSCHFKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDD 122
Query: 130 GTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWFKFSSIAWTHDS 189
GT AL + SED +Y AY LS SGSDW TIK M+++ D L KFS +AWTHD
Sbjct: 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDG 182
Query: 190 KGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGH 249
KG FY+ YP ++GK D GTET +NL+ + YYH LGT QSEDILC + P+ PK++
Sbjct: 183 KGMFYNAYPQ-QDGKS-D-GTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAE 239
Query: 250 VTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVI 309
+++DG+Y+++ I E CDPVN+++YCDL G+ G +L +VKLID F+ +Y+ +
Sbjct: 240 LSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITG------ILKWVKLIDNFEGEYDYV 293
Query: 310 ANDDTVFTFLTNKDAPKYKIIRVDLKEPND--WFEVIPEAERDVLESATAVNLNQMIVSY 367
N+ TVFTF TN+ +P Y++I +D +P + W ++PE E+DVLE V N +++ Y
Sbjct: 294 TNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCY 353
Query: 368 LSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLK 427
L DVK LQ+ DL G+LL P+E+GSV S +++D+ +F FTSFL PGI+Y C+L
Sbjct: 354 LHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLT 413
Query: 428 TETPEMKIFRETIIPGFDRSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYG 487
E E ++FRE + G D S++ Q+F PSKDG TKIPMFIV KK IKLDGSHP LYG
Sbjct: 414 KEELEPRVFREVTVKGIDASDYQTVQIFYPSKDG-TKIPMFIVHKKGIKLDGSHPAFLYG 472
Query: 488 YGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFIS 547
YGGFNIS+TP++SVSR I +RH+G V +ANIRGGGEYGE WHKGG LA KQNCFDDF
Sbjct: 473 YGGFNISITPNYSVSRLIFVRHMGGVLAVANIRGGGEYGETWHKGGILANKQNCFDDFQC 532
Query: 548 ASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIG 607
A+EYLI GYT ++L I GGSNGGLLV C NQRPDLFGC +A VGVMDML++HK+TIG
Sbjct: 533 AAEYLIKEGYTSPKRLTINGGSNGGLLVATCANQRPDLFGCVIAQVGVMDMLKFHKYTIG 592
Query: 608 HAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLH 667
HAW +D+GCS+ ++ F WLIKYSPLHNV+ P + D QYPS LLLTADHDDRVVPLH
Sbjct: 593 HAWTTDYGCSDSKQHFEWLIKYSPLHNVKLP--EADD--IQYPSMLLLTADHDDRVVPLH 648
Query: 668 SLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLG 727
SLK +AT+QY++ S + Q NP++ ++ KAGHG G PT K+I+E +D + F+A+ L
Sbjct: 649 SLKFIATLQYIVGRSRK---QNNPLLIHVDTKAGHGAGKPTAKVIEEVSDMFAFIARCLN 705
Query: 728 ASWV 731
W+
Sbjct: 706 IDWI 709
|
|
| UNIPROTKB|Q9XTA2 PREP "Prolyl endopeptidase" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 2152 (762.6 bits), Expect = 6.7e-223, P = 6.7e-223
Identities = 396/725 (54%), Positives = 520/725 (71%)
Query: 10 SLQYPVARRDESVVDDYHGVKIVDPYRWLEDPDAEEVKDFVQKQVELTDSVLKNCDVRDK 69
S QYP RDE+ V DYHG KI DPY WLEDPD+E+ K FV+ Q ++T L+ C +R
Sbjct: 3 SFQYPDVYRDETAVQDYHGHKICDPYAWLEDPDSEQTKAFVEAQNKITVPFLEQCPIRGL 62
Query: 70 LREKITKLFDSPRYDAPFKRGNKYFYFHNTGLQPQSVLYVQDSLDAKAKVLLDPNTLSDD 129
+E++T+L+D P+Y FK+G +YFYF+NTGLQ Q VLYVQDSL+ +A+V LDPNTLSDD
Sbjct: 63 YKERMTELYDYPKYSCNFKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVCLDPNTLSDD 122
Query: 130 GTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWFKFSSIAWTHDS 189
GT AL + SED +Y+AY LS SGSDW TIK M+++ AD L KFS +AWTHD
Sbjct: 123 GTVALRGYAFSEDGEYVAYGLSASGSDWVTIKFMKVDGAKELADVLERVKFSCMAWTHDG 182
Query: 190 KGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGH 249
KG FY+ YP ++GK D GTET +NL+ + YH LGT QSEDILC + P+ PK++
Sbjct: 183 KGMFYNAYPQ-QDGKS-D-GTETSTNLHQKLCYHVLGTDQSEDILCAEFPDEPKWMGGAE 239
Query: 250 VTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVI 309
+++DG+Y+++ I E CDPVN+++YCDL P G+ G +L +VKLID F+ +Y+ +
Sbjct: 240 LSDDGRYVLLSIREGCDPVNRLWYCDLHQEPNGITG------ILKWVKLIDNFEGEYDYV 293
Query: 310 ANDDTVFTFLTNKDAPKYKIIRVDLKEPND--WFEVIPEAERDVLESATAVNLNQMIVSY 367
N+ TVFTF TN+ +P Y++I +D +P + W ++PE E+DVLE V N +++ Y
Sbjct: 294 TNEGTVFTFKTNRHSPNYRLINIDFTDPEESRWKVLVPEHEKDVLEWVACVRSNFLVLCY 353
Query: 368 LSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLK 427
L DVK LQ+ D+ G+LL P+E+GSV S +++D+ +F FTSFL PGI+Y C+L
Sbjct: 354 LHDVKNTLQLHDMATGALLKTFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLT 413
Query: 428 TETPEMKIFRETIIPGFDRSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYG 487
E E ++FRE + G D S++ Q+F PSKDG TKIPMFIV KK IKLDGSHP LYG
Sbjct: 414 KEELEPRVFREVTVKGIDASDYQTVQIFYPSKDG-TKIPMFIVHKKGIKLDGSHPAFLYG 472
Query: 488 YGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFIS 547
YGGFNIS+TP++SV R I +RH+G V +ANIRGGGEYGE WHKGG LA KQNCFDDF
Sbjct: 473 YGGFNISITPNYSVCRLIFVRHMGGVLAVANIRGGGEYGETWHKGGILANKQNCFDDFQC 532
Query: 548 ASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIG 607
A+EYLI GYT ++L I GGSNGGLLV C NQRPDLFGC +A VGVMDML++HK+TIG
Sbjct: 533 AAEYLIKEGYTSPKRLTINGGSNGGLLVATCANQRPDLFGCVIAQVGVMDMLKFHKYTIG 592
Query: 608 HAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLH 667
HAW +D+GCS+ ++ F WLIKYSPLHNV+ P + D QYPS LLLTADHDDRVVPLH
Sbjct: 593 HAWTTDYGCSDNKQHFEWLIKYSPLHNVKLP--EADD--IQYPSMLLLTADHDDRVVPLH 648
Query: 668 SLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLG 727
S K +AT+Q+++ S + Q NP++ ++ KAGHG G PT K+I+E +D + F+A+ L
Sbjct: 649 SPKFIATLQHLVGRSRK---QNNPLLIHVDTKAGHGAGKPTAKVIEEVSDMFAFIARCLN 705
Query: 728 ASWVE 732
W++
Sbjct: 706 IDWIQ 710
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q9XTA2 | PPCE_BOVIN | 3, ., 4, ., 2, 1, ., 2, 6 | 0.5434 | 0.9644 | 0.9943 | yes | no |
| Q9QUR6 | PPCE_MOUSE | 3, ., 4, ., 2, 1, ., 2, 6 | 0.5448 | 0.9644 | 0.9943 | yes | no |
| O70196 | PPCE_RAT | 3, ., 4, ., 2, 1, ., 2, 6 | 0.5475 | 0.9644 | 0.9943 | yes | no |
| Q86AS5 | PPCE_DICDI | 3, ., 4, ., 2, 1, ., 2, 6 | 0.3698 | 0.9508 | 0.9157 | yes | no |
| P48147 | PPCE_HUMAN | 3, ., 4, ., 2, 1, ., 2, 6 | 0.5441 | 0.9631 | 0.9929 | yes | no |
| P23687 | PPCE_PIG | 3, ., 4, ., 2, 1, ., 2, 6 | 0.5441 | 0.9631 | 0.9929 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| fgenesh4_pg.C_LG_V001617 | hypothetical protein (731 aa) | ||||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 732 | |||
| COG1505 | 648 | COG1505, COG1505, Serine proteases of the peptidas | 1e-159 | |
| pfam02897 | 412 | pfam02897, Peptidase_S9_N, Prolyl oligopeptidase, | 1e-137 | |
| COG1770 | 682 | COG1770, PtrB, Protease II [Amino acid transport a | 2e-92 | |
| pfam00326 | 212 | pfam00326, Peptidase_S9, Prolyl oligopeptidase fam | 2e-65 | |
| PRK10115 | 686 | PRK10115, PRK10115, protease 2; Provisional | 8e-42 | |
| COG1506 | 620 | COG1506, DAP2, Dipeptidyl aminopeptidases/acylamin | 4e-15 |
| >gnl|CDD|224422 COG1505, COG1505, Serine proteases of the peptidase family S9A [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 474 bits (1223), Expect = e-159
Identities = 244/707 (34%), Positives = 346/707 (48%), Gaps = 74/707 (10%)
Query: 33 DPYRWLEDPDAEEVKDFVQKQVELTDSVLKNCDVRDKLREKITKLFDSPRYDAPFKRGNK 92
DPYRWLED D+ E +V+ Q T L R +++ +L+D PF+RG +
Sbjct: 4 DPYRWLEDLDSAEALKWVEAQNAKTREFLGEDSARAASDKRLLELWDYEDIPIPFERGGR 63
Query: 93 YFYFHN-----TGLQPQSVLYVQDSLDAKAKVLLDPNTLSDDG--TAALIKVSVSEDAKY 145
Y+ F GL ++ L S + +VL+D + LS D AL SV D
Sbjct: 64 YYNFWQDALYPRGLYRRTTLETYRSAKPEWEVLIDVDALSADLGDKVALGGASVLPDGTR 123
Query: 146 LAYALSYSGSDWATIKLMRIEDQIVEADAL---SWFKFSSIAWTHDSKGFFYSRYPAPKE 202
L Y+LS GSD R D +E FKF I+W D G F SRY PKE
Sbjct: 124 LLYSLSIGGSDAGI---TREFD--LETGEFVEEEGFKFPGISWL-DDDGVFVSRYWRPKE 177
Query: 203 GKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIE 262
+ L Q D++ + + F ++EDG + ++ +
Sbjct: 178 KTPSGYP-----RVVKRLKRGKLFEGQEGDVMVNARGDQDPWGFRLVLSEDGDFFMLSLW 232
Query: 263 ENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNK 322
+ + KL++ A + D + LT++
Sbjct: 233 LGTSGKGLIKLGLPD------------KVGYEWGKLVNTLRADWTFADVDYGLLYLLTDE 280
Query: 323 DAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKN 382
D K+I E IPE E LE ++++ L +V L++ DLK
Sbjct: 281 DLELGKVIA----------EFIPE-EEQSLEQVVTTK-DKLVAGTLDNVSGRLEVYDLK- 327
Query: 383 GSLLHQLP-IEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTETPEMKIFRETII 441
G + ++ G++ SA ++ VF++FTSF P +Y+ +L E+++ RE +
Sbjct: 328 GERIEEVELPPPGALGMGSADKDGDEVFLAFTSFTTPSTLYRLDLFGG--ELEVIREQPV 385
Query: 442 PGFDRSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSV 501
FD + V Q F SKDG T+IP FIV +K K D +P LLY YGGFNIS+TP FS
Sbjct: 386 Q-FDADNYEVEQFFATSKDG-TRIPYFIV-RKGAKKD-ENPTLLYAYGGFNISLTPRFSG 441
Query: 502 SRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSR 561
SR + + G VF +ANIRGGGE+G EWH+ G KQN FDDFI+ +E LI G T
Sbjct: 442 SRKLWLER-GGVFVLANIRGGGEFGPEWHQAGMKENKQNVFDDFIAVAEDLIKRGITSPE 500
Query: 562 KLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHAWVSDFGCSEEEE 621
KL I+GGSNGGLLVGA + QRP+LFG A+ V ++DMLRYH T G +W++++G ++ E
Sbjct: 501 KLGIQGGSNGGLLVGAALTQRPELFGAAVCEVPLLDMLRYHLLTAGSSWIAEYGNPDDPE 560
Query: 622 EFYWLIKYSPLHNVRRPWEQNPDKPFQ-YPSTLLLTADHDDRVVPLHSLKLLATMQYVLC 680
+ +L+ YSP HN+ KP Q YP TL+ T+ HDDRV P H+ K A +Q V
Sbjct: 561 DRAFLLAYSPYHNL---------KPGQKYPPTLITTSLHDDRVHPAHARKFAAKLQEV-- 609
Query: 681 TSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLG 727
P++ R E K GHG PT ++ E AD F+ + LG
Sbjct: 610 --------GAPVLLREETKGGHGGAAPTAEIARELADLLAFLLRTLG 648
|
Length = 648 |
| >gnl|CDD|217275 pfam02897, Peptidase_S9_N, Prolyl oligopeptidase, N-terminal beta-propeller domain | Back alignment and domain information |
|---|
Score = 409 bits (1054), Expect = e-137
Identities = 165/433 (38%), Positives = 239/433 (55%), Gaps = 30/433 (6%)
Query: 14 PVARRDESVVDDYHGVKIVDPYRWLEDPDAEEVKDFVQKQVELTDSVLKNC-DVRDKLRE 72
P RRDE+VVD+YHG + DPYRWLED D+ EV +V+ + + T+ L +R+K++E
Sbjct: 1 PPTRRDETVVDEYHGDVVSDPYRWLEDDDSPEVLAWVEAENKYTEDFLAQLKPLREKIKE 60
Query: 73 KITKLFDSPRYDAPFKRGNKYFYFHNTGLQPQSVLYVQDSL---DAKAKVLLDPNTLSDD 129
++T L + APF++G Y+YF NTG + QSVLY +D+ +V LDPNTLS+D
Sbjct: 61 ELTALINYDDISAPFRKGGYYYYFRNTGGKNQSVLYRRDAGEGPGETEEVFLDPNTLSED 120
Query: 130 G--TAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWFKFSSIAWTH 187
G T AL + S D + LAY+LS SGSDW TI+ +E D L KFS I W
Sbjct: 121 GDFTVALDGYAFSPDGRLLAYSLSLSGSDWYTIRFRDVETGEPLPDVLEGVKFSGIVWAP 180
Query: 188 DSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFS 247
D+KGFFYSRY P+ G NL + + H LGT QS+D+L +++P+ P +
Sbjct: 181 DNKGFFYSRYDEPERGST---------NLNQKVWRHRLGTPQSQDVLVFEEPDEPFWYLG 231
Query: 248 GHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYE 307
++DG+YL + D N++Y DL+ + P K++ FD Y
Sbjct: 232 AERSDDGKYLFISSASGTDV-NELYVLDLAQ-----------EKDGPLRKVVPRFDGVYY 279
Query: 308 VIANDDTVFTFLTNKDAPKYKIIRVDLKEPND--WFEVIPEAERDVLESATAVNLNQMIV 365
+ ++ F FLTN AP ++++RVDL +P+ W +VI E DVL V N +++
Sbjct: 280 YVEHEGDTFYFLTNDGAPNFRLVRVDLNDPSPADWKDVIVEHREDVLLEEITVFGNYLVL 339
Query: 366 SYLSDVKYVLQIRDLKNG-SLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQC 424
SY D LQ+ DL G L + +GSV++ S +D + SF+SFL PG +Y
Sbjct: 340 SYRRDALSRLQVFDLGGGGVLFEEFLPGVGSVSSASGEYDDDELRYSFSSFLTPGTIYDL 399
Query: 425 NLKTETPEMKIFR 437
+L T E+ R
Sbjct: 400 DLATGELELLKDR 412
|
This unusual 7-stranded beta-propeller domain protects the catalytic triad of prolyl oligopeptidase (see pfam00326), excluding larger peptides and proteins from proteolysis in the cytosol. Length = 412 |
| >gnl|CDD|224684 COG1770, PtrB, Protease II [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 302 bits (775), Expect = 2e-92
Identities = 194/738 (26%), Positives = 328/738 (44%), Gaps = 88/738 (11%)
Query: 14 PVARRDESVVDDYHGVKIVDPYRWLEDPD--AEEVKDFVQKQVELTDSVLKNC-DVRDKL 70
P+A++ +HG VD Y WL D + EV +++ + T++V+ + ++ K+
Sbjct: 7 PIAKK-VPTTRTHHGDTRVDDYAWLRDDNWSNPEVLAYLEAENAYTEAVMAHLQPLQKKI 65
Query: 71 REKI---TKLFDSPRYDAPFKRGNKYFY--FHNTGLQPQSVLYVQDSLDAKAKVLLDPNT 125
E+I K D P+++G +Y P + + + +VLLD N
Sbjct: 66 FEEIKGRIKEDDLS---VPYRKGPYEYYSRTEEGKEYPIYCRQPDEGGEGE-EVLLDVNK 121
Query: 126 LSDDGT-AALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWFKFSSIA 184
++ +L S+S D LAY++ G + T++ + D ++ S A
Sbjct: 122 EAEGHDFFSLGAASISPDHNLLAYSVDVLGDEQYTLRFKDLATGEELPDEIT-NTSGSFA 180
Query: 185 WTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILC--WKDPEHP 242
W D K FY +++ + + H LGT S D L KD
Sbjct: 181 WAADGKTLFY--------------TRLDENHRPDKVWRHRLGTPGSSDELVYEEKDDR-- 224
Query: 243 KYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGF 302
+ S + Y+V I ++V L A P V L
Sbjct: 225 -FFLSVGRSRSEAYIV--ISLGSHITSEVRL--LDA---------DDPEAEPKVVLPREN 270
Query: 303 DAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLK-EPNDWFEVIPEAERDVLESATAVNLN 361
+Y V D F L+N D +K++R + + ++W E+IP E LE +
Sbjct: 271 GVEYSVEHGGD-RFYILSNADGKNFKLVRAPVSADKSNWRELIPHREDVRLEGVDLFA-D 328
Query: 362 QMIVSYLSDVKYVLQIRDLKNGSLLH-QLPIEIGSVN-AISARREDSVVFISFTSFLIPG 419
+++ + + +RD K G E S + + + + S++S P
Sbjct: 329 HLVLLERQEGLPRVVVRDRKTGEERGIAFDDEAYSAGLSGNPEFDSDRLRYSYSSMTTPA 388
Query: 420 IVYQCNLKTETPEMKIFRETIIP-GFDRSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLD 478
++ ++ T E + ++ +P GFD ++ +++ + DG ++P+ +V +K+ KLD
Sbjct: 389 TLFDYDMATG--ERTLLKQQEVPGGFDPEDYVSRRIWATADDG-VQVPVSLVYRKDTKLD 445
Query: 479 GSHPCLLYGYGGFNISVTPSFSVSR-TILMRHLGAVFCIANIRGGGEYGEEWHKGGALAK 537
GS P LLYGYG + IS+ PSFS++R ++L R G V+ IA++RGGGE G W++ G L
Sbjct: 446 GSAPLLLYGYGAYGISMDPSFSIARLSLLDR--GFVYAIAHVRGGGELGRAWYEDGKLLN 503
Query: 538 KQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMD 597
K+N F DFI+A+ +L+ GYT ++ GGS GG+L+GA N PDLF +A V +D
Sbjct: 504 KKNTFTDFIAAARHLVKEGYTSPDRIVAIGGSAGGMLMGAVANMAPDLFAGIIAQVPFVD 563
Query: 598 MLRYHKFTIGHA--------WVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQY 649
+L T+ W ++G + E + ++ YSP NV Q Y
Sbjct: 564 VLT----TMLDPSLPLTVTEW-DEWGNPLDPEYYDYIKSYSPYDNVE---AQP------Y 609
Query: 650 PSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQ 709
P+ L+ T +D RV K +A ++ E NP++ + AGHG
Sbjct: 610 PAILVTTGLNDPRVQYWEPAKWVAKLR-------ELKTDGNPLLLKTNMDAGHGGASGRF 662
Query: 710 KMIDEAADRYGFMAKMLG 727
+ ++E A Y F+ K+ G
Sbjct: 663 QRLEEIAFEYAFLLKLAG 680
|
Length = 682 |
| >gnl|CDD|215859 pfam00326, Peptidase_S9, Prolyl oligopeptidase family | Back alignment and domain information |
|---|
Score = 215 bits (550), Expect = 2e-65
Identities = 94/235 (40%), Positives = 119/235 (50%), Gaps = 25/235 (10%)
Query: 497 PSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAG 556
PSFS L+ G V +AN RG G YG WH G QN FDDFI+A+EYLI+ G
Sbjct: 1 PSFS-WNLQLLADRGYVVAVANGRGSGGYGRAWHDAGKGDLGQNEFDDFIAAAEYLIAQG 59
Query: 557 YTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHA-WVSDFG 615
Y +L I GGS GG L GA +NQRPDLF A+A V V+D L Y T ++G
Sbjct: 60 YVDPDRLAIWGGSYGGYLTGAALNQRPDLFKAAVAVVPVVDWLTYMSDTSPFTERYMEWG 119
Query: 616 CSEEEEEFY-WLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLAT 674
+ EE Y +L YSP NV+ YP LL+ HDDRV P +LKL+A
Sbjct: 120 NPWDNEEGYRYLSPYSPYDNVK-----------AYPPLLLIHGLHDDRVPPAEALKLVAA 168
Query: 675 MQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLGAS 729
+Q + ++ I GHG G P K +E A F+ K+LG +
Sbjct: 169 LQA----------KGKNVLLLIFPDEGHGGGKPRNK-REEYARELAFLLKVLGGT 212
|
Length = 212 |
| >gnl|CDD|182247 PRK10115, PRK10115, protease 2; Provisional | Back alignment and domain information |
|---|
Score = 162 bits (411), Expect = 8e-42
Identities = 170/703 (24%), Positives = 308/703 (43%), Gaps = 111/703 (15%)
Query: 27 HGVKIVDPYRWLEDPDAE--EVKDFVQKQVELTDSVLKNCD-VRDKLREKITKLFDSPRY 83
HG +D Y WL D EV D++ ++ V+ + ++D++ ++I
Sbjct: 15 HGDTRIDNYYWLRDDTRSQPEVLDYLHQENSYGHRVMASQQALQDRILKEIIDRIPQREV 74
Query: 84 DAPF-KRGNKYFYFHNTG-----LQPQSVLYVQ-DSLDAKAKVLLDPNTLSDDGT-AALI 135
AP+ K G +Y + + G Q QS + D + LLD N + L
Sbjct: 75 SAPYIKNGYRYRHIYEPGCEYAIYQRQSAFSEEWDEWE----TLLDANKRAAHSEFYTLG 130
Query: 136 KVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWFK------FSSIAWTHDS 189
++++ D +A A + I+ +E +W+ S W +DS
Sbjct: 131 GMAITPDNTIMALAEDFLSRRQYGIRFRNLETG-------NWYPELLDNVEPSFVWANDS 183
Query: 190 KGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGH 249
F+Y R + L ++ + H +GT S+D L +++ + Y+ S H
Sbjct: 184 WTFYYVR-------------KHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYV-SLH 229
Query: 250 VTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVI 309
T Y+V I ++V D + L + PFV L D +Y +
Sbjct: 230 KTTSKHYVV--IHLASATTSEVLLLD-AELADAE----------PFVFLPRRKDHEYSL- 275
Query: 310 ANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLS 369
+ F +N+ + + R +++ W E+IP E +LE T + +L
Sbjct: 276 DHYQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFT------LFTDWL- 328
Query: 370 DVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISF-------------TSFL 416
V++ R + + L Q+ + V I+ V +I++ +S
Sbjct: 329 ----VVEERQ-RGLTSLRQINRKTREVIGIAFDDPAYVTWIAYNPEPETSRLRYGYSSMT 383
Query: 417 IPGIVYQCNLKTETPEMKIFRETIIPGFDRSEFHVHQVFVPSKDGSTKIPMFIVSKKNIK 476
P +++ ++ +T E ++ ++T +PGFD + + +++ ++DG ++P+ +V +
Sbjct: 384 TPDTLFELDM--DTGERRVLKQTEVPGFDAANYRSEHLWITARDG-VEVPVSLVYHRKHF 440
Query: 477 LDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALA 536
G +P L+YGYG + S+ FS SR L+ G V+ I ++RGGGE G++W++ G
Sbjct: 441 RKGHNPLLVYGYGSYGASIDADFSFSRLSLLDR-GFVYAIVHVRGGGELGQQWYEDGKFL 499
Query: 537 KKQNCFDDFISASEYLISAGYTQSRKLCIE-GGSNGGLLVGACINQRPDLFGCALAHVGV 595
KK+N F+D++ A + L+ GY S LC GGS GG+L+G INQRP+LF +A V
Sbjct: 500 KKKNTFNDYLDACDALLKLGYG-SPSLCYGMGGSAGGMLMGVAINQRPELFHGVIAQVPF 558
Query: 596 MDMLRYH-----KFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYP 650
+D++ T G ++G ++ + + ++ YSP NV YP
Sbjct: 559 VDVVTTMLDESIPLTTGE--FEEWGNPQDPQYYEYMKSYSPYDNVT---------AQAYP 607
Query: 651 STLLLTADHDDRVVPLHSLKLLATMQ--------YVLCTSLEN 685
L+ T HD +V K +A ++ +LCT +++
Sbjct: 608 HLLVTTGLHDSQVQYWEPAKWVAKLRELKTDDHLLLLCTDMDS 650
|
Length = 686 |
| >gnl|CDD|224423 COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 78.7 bits (194), Expect = 4e-15
Identities = 52/226 (23%), Positives = 83/226 (36%), Gaps = 16/226 (7%)
Query: 454 VFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAV 513
V S DG T I ++ +P ++Y +GG + V SF+ +L G
Sbjct: 368 VTYKSNDGET-IHGWLYKPPGFDPRKKYPLIVYIHGGPSAQVGYSFNPEIQVLA-SAGYA 425
Query: 514 FCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGL 573
N RG YG E+ +D I+A + L+ ++ I GGS GG
Sbjct: 426 VLAPNYRGSTGYGREFADAIRGDWGGVDLEDLIAAVDALVKLPLVDPERIGITGGSYGGY 485
Query: 574 LVGACINQRPDLFGCALAHVGVMDMLRYHKFTIG--HAWVSDFGCSEEEEEFYWLIKYSP 631
+ + P GV +L + + T G + G E+ E Y SP
Sbjct: 486 MTLLAATKTPRFKAAVAVAGGVDWLLYFGESTEGLRFDPEENGGGPPEDREKYE--DRSP 543
Query: 632 LHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQY 677
+ N P LL+ + DDRV + +L+ ++
Sbjct: 544 IFYAD-----NIKTP-----LLLIHGEEDDRVPIEQAEQLVDALKR 579
|
Length = 620 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 732 | |||
| COG1770 | 682 | PtrB Protease II [Amino acid transport and metabol | 100.0 | |
| KOG2237 | 712 | consensus Predicted serine protease [Posttranslati | 100.0 | |
| PRK10115 | 686 | protease 2; Provisional | 100.0 | |
| COG1505 | 648 | Serine proteases of the peptidase family S9A [Amin | 100.0 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 100.0 | |
| COG1506 | 620 | DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-pept | 100.0 | |
| KOG2281 | 867 | consensus Dipeptidyl aminopeptidases/acylaminoacyl | 100.0 | |
| PF00326 | 213 | Peptidase_S9: Prolyl oligopeptidase family This fa | 100.0 | |
| KOG2100 | 755 | consensus Dipeptidyl aminopeptidase [Posttranslati | 100.0 | |
| PRK13604 | 307 | luxD acyl transferase; Provisional | 99.87 | |
| PLN02442 | 283 | S-formylglutathione hydrolase | 99.86 | |
| TIGR02821 | 275 | fghA_ester_D S-formylglutathione hydrolase. This m | 99.86 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.85 | |
| PRK10566 | 249 | esterase; Provisional | 99.85 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.84 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.83 | |
| PF05448 | 320 | AXE1: Acetyl xylan esterase (AXE1); InterPro: IPR0 | 99.83 | |
| COG3458 | 321 | Acetyl esterase (deacetylase) [Secondary metabolit | 99.82 | |
| PLN02298 | 330 | hydrolase, alpha/beta fold family protein | 99.82 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.82 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.82 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 99.82 | |
| PRK10162 | 318 | acetyl esterase; Provisional | 99.82 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.81 | |
| PRK05077 | 414 | frsA fermentation/respiration switch protein; Revi | 99.81 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.8 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.8 | |
| PF01738 | 218 | DLH: Dienelactone hydrolase family; InterPro: IPR0 | 99.79 | |
| TIGR01840 | 212 | esterase_phb esterase, PHB depolymerase family. Th | 99.79 | |
| COG0412 | 236 | Dienelactone hydrolase and related enzymes [Second | 99.79 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.78 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.78 | |
| PLN02385 | 349 | hydrolase; alpha/beta fold family protein | 99.75 | |
| PHA02857 | 276 | monoglyceride lipase; Provisional | 99.75 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 99.75 | |
| COG1647 | 243 | Esterase/lipase [General function prediction only] | 99.75 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.75 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.74 | |
| PRK05371 | 767 | x-prolyl-dipeptidyl aminopeptidase; Provisional | 99.74 | |
| COG0657 | 312 | Aes Esterase/lipase [Lipid metabolism] | 99.72 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.72 | |
| PRK10749 | 330 | lysophospholipase L2; Provisional | 99.71 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.7 | |
| KOG1455 | 313 | consensus Lysophospholipase [Lipid transport and m | 99.7 | |
| PRK11460 | 232 | putative hydrolase; Provisional | 99.7 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.7 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.7 | |
| KOG1552 | 258 | consensus Predicted alpha/beta hydrolase [General | 99.68 | |
| PLN02652 | 395 | hydrolase; alpha/beta fold family protein | 99.68 | |
| PF07859 | 211 | Abhydrolase_3: alpha/beta hydrolase fold A web pag | 99.64 | |
| PF10503 | 220 | Esterase_phd: Esterase PHB depolymerase | 99.63 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.62 | |
| PF02230 | 216 | Abhydrolase_2: Phospholipase/Carboxylesterase; Int | 99.62 | |
| COG2267 | 298 | PldB Lysophospholipase [Lipid metabolism] | 99.62 | |
| KOG1515 | 336 | consensus Arylacetamide deacetylase [Defense mecha | 99.6 | |
| PF02129 | 272 | Peptidase_S15: X-Pro dipeptidyl-peptidase (S15 fam | 99.6 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 99.6 | |
| KOG4391 | 300 | consensus Predicted alpha/beta hydrolase BEM46 [Ge | 99.59 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.59 | |
| TIGR00976 | 550 | /NonD putative hydrolase, CocE/NonD family. This m | 99.58 | |
| PLN02511 | 388 | hydrolase | 99.57 | |
| PRK10985 | 324 | putative hydrolase; Provisional | 99.55 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 99.55 | |
| TIGR01607 | 332 | PST-A Plasmodium subtelomeric family (PST-A). Thes | 99.54 | |
| TIGR03611 | 257 | RutD pyrimidine utilization protein D. This protei | 99.54 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 99.52 | |
| PF06500 | 411 | DUF1100: Alpha/beta hydrolase of unknown function | 99.52 | |
| COG3509 | 312 | LpqC Poly(3-hydroxybutyrate) depolymerase [Seconda | 99.51 | |
| TIGR03100 | 274 | hydr1_PEP hydrolase, ortholog 1, exosortase system | 99.5 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 99.5 | |
| PF12695 | 145 | Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3 | 99.5 | |
| PRK00870 | 302 | haloalkane dehalogenase; Provisional | 99.5 | |
| TIGR03343 | 282 | biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-die | 99.49 | |
| COG0400 | 207 | Predicted esterase [General function prediction on | 99.49 | |
| PF12715 | 390 | Abhydrolase_7: Abhydrolase family; PDB: 3NUZ_C 3G8 | 99.48 | |
| PLN00021 | 313 | chlorophyllase | 99.48 | |
| COG2945 | 210 | Predicted hydrolase of the alpha/beta superfamily | 99.46 | |
| TIGR02427 | 251 | protocat_pcaD 3-oxoadipate enol-lactonase. Members | 99.46 | |
| TIGR03056 | 278 | bchO_mg_che_rel putative magnesium chelatase acces | 99.46 | |
| COG0429 | 345 | Predicted hydrolase of the alpha/beta-hydrolase fo | 99.46 | |
| PRK11071 | 190 | esterase YqiA; Provisional | 99.46 | |
| PRK03592 | 295 | haloalkane dehalogenase; Provisional | 99.43 | |
| COG4099 | 387 | Predicted peptidase [General function prediction o | 99.43 | |
| TIGR01249 | 306 | pro_imino_pep_1 proline iminopeptidase, Neisseria- | 99.43 | |
| PLN02872 | 395 | triacylglycerol lipase | 99.43 | |
| TIGR01250 | 288 | pro_imino_pep_2 proline-specific peptidases, Bacil | 99.42 | |
| PLN02824 | 294 | hydrolase, alpha/beta fold family protein | 99.42 | |
| PRK10673 | 255 | acyl-CoA esterase; Provisional | 99.39 | |
| PLN02965 | 255 | Probable pheophorbidase | 99.38 | |
| PLN03087 | 481 | BODYGUARD 1 domain containing hydrolase; Provision | 99.37 | |
| TIGR03101 | 266 | hydr2_PEP hydrolase, ortholog 2, exosortase system | 99.37 | |
| PRK03204 | 286 | haloalkane dehalogenase; Provisional | 99.37 | |
| TIGR01738 | 245 | bioH putative pimeloyl-BioC--CoA transferase BioH. | 99.37 | |
| TIGR02240 | 276 | PHA_depoly_arom poly(3-hydroxyalkanoate) depolymer | 99.36 | |
| PLN02679 | 360 | hydrolase, alpha/beta fold family protein | 99.35 | |
| PF08840 | 213 | BAAT_C: BAAT / Acyl-CoA thioester hydrolase C term | 99.34 | |
| KOG1838 | 409 | consensus Alpha/beta hydrolase [General function p | 99.34 | |
| TIGR03695 | 251 | menH_SHCHC 2-succinyl-6-hydroxy-2,4-cyclohexadiene | 99.34 | |
| PRK06489 | 360 | hypothetical protein; Provisional | 99.33 | |
| KOG4178 | 322 | consensus Soluble epoxide hydrolase [Lipid transpo | 99.33 | |
| PLN02894 | 402 | hydrolase, alpha/beta fold family protein | 99.33 | |
| TIGR01836 | 350 | PHA_synth_III_C poly(R)-hydroxyalkanoic acid synth | 99.32 | |
| PRK14875 | 371 | acetoin dehydrogenase E2 subunit dihydrolipoyllysi | 99.32 | |
| PF12697 | 228 | Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3 | 99.32 | |
| TIGR01392 | 351 | homoserO_Ac_trn homoserine O-acetyltransferase. Th | 99.3 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 99.29 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 99.28 | |
| PRK00175 | 379 | metX homoserine O-acetyltransferase; Provisional | 99.28 | |
| PLN02578 | 354 | hydrolase | 99.26 | |
| PF03583 | 290 | LIP: Secretory lipase ; InterPro: IPR005152 This e | 99.25 | |
| PRK07581 | 339 | hypothetical protein; Validated | 99.25 | |
| PRK10439 | 411 | enterobactin/ferric enterobactin esterase; Provisi | 99.25 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 99.24 | |
| PRK10349 | 256 | carboxylesterase BioH; Provisional | 99.24 | |
| KOG4667 | 269 | consensus Predicted esterase [Lipid transport and | 99.22 | |
| PRK08775 | 343 | homoserine O-acetyltransferase; Provisional | 99.21 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.2 | |
| PF00756 | 251 | Esterase: Putative esterase; InterPro: IPR000801 T | 99.2 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.2 | |
| KOG3043 | 242 | consensus Predicted hydrolase related to dienelact | 99.18 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 99.18 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 99.17 | |
| KOG4627 | 270 | consensus Kynurenine formamidase [Amino acid trans | 99.17 | |
| cd00312 | 493 | Esterase_lipase Esterases and lipases (includes fu | 99.15 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.12 | |
| PF12740 | 259 | Chlorophyllase2: Chlorophyllase enzyme; InterPro: | 99.11 | |
| PRK11126 | 242 | 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxyl | 99.11 | |
| PLN02211 | 273 | methyl indole-3-acetate methyltransferase | 99.1 | |
| COG2272 | 491 | PnbA Carboxylesterase type B [Lipid metabolism] | 99.09 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.09 | |
| PLN03084 | 383 | alpha/beta hydrolase fold protein; Provisional | 99.07 | |
| KOG1454 | 326 | consensus Predicted hydrolase/acyltransferase (alp | 99.03 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.03 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 99.02 | |
| COG0627 | 316 | Predicted esterase [General function prediction on | 99.02 | |
| PRK06765 | 389 | homoserine O-acetyltransferase; Provisional | 99.01 | |
| PLN02980 | 1655 | 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesi | 99.0 | |
| PF05728 | 187 | UPF0227: Uncharacterised protein family (UPF0227); | 98.99 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 98.99 | |
| KOG3101 | 283 | consensus Esterase D [General function prediction | 98.98 | |
| COG2936 | 563 | Predicted acyl esterases [General function predict | 98.98 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 98.96 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 98.94 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 98.94 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 98.93 | |
| PRK05855 | 582 | short chain dehydrogenase; Validated | 98.91 | |
| PF03403 | 379 | PAF-AH_p_II: Platelet-activating factor acetylhydr | 98.89 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 98.89 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 98.88 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 98.87 | |
| KOG4409 | 365 | consensus Predicted hydrolase/acyltransferase (alp | 98.86 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 98.85 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 98.83 | |
| PF00561 | 230 | Abhydrolase_1: alpha/beta hydrolase fold A web pag | 98.83 | |
| PTZ00421 | 493 | coronin; Provisional | 98.83 | |
| KOG2112 | 206 | consensus Lysophospholipase [Lipid transport and m | 98.83 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 98.82 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 98.82 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 98.8 | |
| TIGR01838 | 532 | PHA_synth_I poly(R)-hydroxyalkanoic acid synthase, | 98.77 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 98.75 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 98.74 | |
| KOG2624 | 403 | consensus Triglyceride lipase-cholesterol esterase | 98.73 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 98.71 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 98.7 | |
| COG4757 | 281 | Predicted alpha/beta hydrolase [General function p | 98.69 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 98.68 | |
| PF00135 | 535 | COesterase: Carboxylesterase family The prints ent | 98.68 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 98.66 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 98.65 | |
| PTZ00420 | 568 | coronin; Provisional | 98.65 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.64 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 98.63 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 98.62 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 98.62 | |
| cd00707 | 275 | Pancreat_lipase_like Pancreatic lipase-like enzyme | 98.62 | |
| KOG2984 | 277 | consensus Predicted hydrolase [General function pr | 98.62 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 98.61 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 98.61 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 98.61 | |
| PF06821 | 171 | Ser_hydrolase: Serine hydrolase; InterPro: IPR0106 | 98.6 | |
| PRK07868 | 994 | acyl-CoA synthetase; Validated | 98.59 | |
| PF08538 | 303 | DUF1749: Protein of unknown function (DUF1749); In | 98.59 | |
| PTZ00420 | 568 | coronin; Provisional | 98.58 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 98.57 | |
| PF07224 | 307 | Chlorophyllase: Chlorophyllase; InterPro: IPR01082 | 98.55 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 98.54 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 98.54 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 98.53 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 98.53 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 98.53 | |
| COG2382 | 299 | Fes Enterochelin esterase and related enzymes [Ino | 98.53 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 98.53 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 98.53 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 98.52 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 98.52 | |
| KOG3847 | 399 | consensus Phospholipase A2 (platelet-activating fa | 98.51 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 98.51 | |
| PTZ00421 | 493 | coronin; Provisional | 98.51 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 98.49 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 98.49 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 98.48 | |
| KOG2382 | 315 | consensus Predicted alpha/beta hydrolase [General | 98.47 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 98.47 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 98.43 | |
| TIGR01839 | 560 | PHA_synth_II poly(R)-hydroxyalkanoic acid synthase | 98.41 | |
| COG2819 | 264 | Predicted hydrolase of the alpha/beta superfamily | 98.4 | |
| COG4188 | 365 | Predicted dienelactone hydrolase [General function | 98.38 | |
| KOG2564 | 343 | consensus Predicted acetyltransferases and hydrola | 98.37 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 98.37 | |
| PF10340 | 374 | DUF2424: Protein of unknown function (DUF2424); In | 98.36 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 98.35 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 98.34 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 98.34 | |
| COG3208 | 244 | GrsT Predicted thioesterase involved in non-riboso | 98.32 | |
| COG3571 | 213 | Predicted hydrolase of the alpha/beta-hydrolase fo | 98.31 | |
| PRK10115 | 686 | protease 2; Provisional | 98.31 | |
| TIGR03230 | 442 | lipo_lipase lipoprotein lipase. Members of this pr | 98.29 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 98.29 | |
| PF09752 | 348 | DUF2048: Uncharacterized conserved protein (DUF204 | 98.27 | |
| COG2021 | 368 | MET2 Homoserine acetyltransferase [Amino acid tran | 98.26 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 98.26 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 98.23 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 98.23 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 98.22 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 98.21 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 98.2 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 98.19 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 98.18 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 98.18 | |
| PF11339 | 581 | DUF3141: Protein of unknown function (DUF3141); In | 98.15 | |
| PF06342 | 297 | DUF1057: Alpha/beta hydrolase of unknown function | 98.15 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 98.14 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 98.14 | |
| COG1073 | 299 | Hydrolases of the alpha/beta superfamily [General | 98.12 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 98.12 | |
| COG0596 | 282 | MhpC Predicted hydrolases or acyltransferases (alp | 98.09 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 98.08 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 98.08 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 98.08 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 98.08 | |
| PF02273 | 294 | Acyl_transf_2: Acyl transferase; InterPro: IPR0031 | 98.02 | |
| KOG1553 | 517 | consensus Predicted alpha/beta hydrolase BAT5 [Gen | 98.02 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 98.01 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 98.0 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 97.99 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 97.97 | |
| PF03959 | 212 | FSH1: Serine hydrolase (FSH1); InterPro: IPR005645 | 97.96 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 97.95 | |
| PF05677 | 365 | DUF818: Chlamydia CHLPS protein (DUF818); InterPro | 97.93 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 97.93 | |
| PF11144 | 403 | DUF2920: Protein of unknown function (DUF2920); In | 97.92 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 97.91 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 97.91 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 97.91 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 97.9 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 97.89 | |
| KOG1516 | 545 | consensus Carboxylesterase and related proteins [G | 97.89 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 97.89 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 97.89 | |
| TIGR03502 | 792 | lipase_Pla1_cef extracellular lipase, Pla-1/cef fa | 97.89 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 97.87 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 97.85 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 97.83 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 97.83 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 97.81 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 97.81 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 97.8 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 97.79 | |
| PRK04940 | 180 | hypothetical protein; Provisional | 97.77 | |
| TIGR01849 | 406 | PHB_depoly_PhaZ polyhydroxyalkanoate depolymerase, | 97.74 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 97.73 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 97.73 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 97.72 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 97.72 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 97.7 | |
| PF10142 | 367 | PhoPQ_related: PhoPQ-activated pathogenicity-relat | 97.69 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 97.69 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 97.67 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 97.67 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 97.65 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 97.63 | |
| PF05577 | 434 | Peptidase_S28: Serine carboxypeptidase S28; InterP | 97.63 | |
| KOG2551 | 230 | consensus Phospholipase/carboxyhydrolase [Amino ac | 97.62 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 97.61 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 97.6 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 97.59 | |
| COG3545 | 181 | Predicted esterase of the alpha/beta hydrolase fol | 97.57 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 97.56 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 97.56 | |
| PF12146 | 79 | Hydrolase_4: Putative lysophospholipase; InterPro: | 97.56 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 97.54 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 97.52 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 97.52 | |
| PF06057 | 192 | VirJ: Bacterial virulence protein (VirJ); InterPro | 97.48 | |
| COG3243 | 445 | PhaC Poly(3-hydroxyalkanoate) synthetase [Lipid me | 97.47 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 97.46 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 97.44 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 97.43 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 97.41 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 97.41 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 97.41 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 97.4 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 97.4 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 97.39 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 97.37 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 97.37 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 97.35 | |
| KOG3253 | 784 | consensus Predicted alpha/beta hydrolase [General | 97.32 | |
| TIGR02171 | 912 | Fb_sc_TIGR02171 Fibrobacter succinogenes paralogou | 97.23 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 97.23 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 97.2 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 97.19 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 97.18 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 97.18 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 97.17 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 97.16 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 97.14 | |
| COG3150 | 191 | Predicted esterase [General function prediction on | 97.14 | |
| COG1770 | 682 | PtrB Protease II [Amino acid transport and metabol | 97.12 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 97.09 | |
| COG4947 | 227 | Uncharacterized protein conserved in bacteria [Fun | 97.08 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 97.06 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 97.05 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 97.04 | |
| PF00151 | 331 | Lipase: Lipase; InterPro: IPR013818 Triglyceride l | 97.03 | |
| TIGR02171 | 912 | Fb_sc_TIGR02171 Fibrobacter succinogenes paralogou | 97.01 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 96.99 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 96.98 | |
| KOG4840 | 299 | consensus Predicted hydrolases or acyltransferases | 96.93 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 96.93 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 96.93 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 96.92 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 96.91 | |
| PF06028 | 255 | DUF915: Alpha/beta hydrolase of unknown function ( | 96.89 | |
| PF10230 | 266 | DUF2305: Uncharacterised conserved protein (DUF230 | 96.88 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 96.87 | |
| KOG2183 | 492 | consensus Prolylcarboxypeptidase (angiotensinase C | 96.86 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 96.82 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 96.82 | |
| PTZ00472 | 462 | serine carboxypeptidase (CBP1); Provisional | 96.76 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 96.74 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 96.72 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 96.71 | |
| PF07676 | 39 | PD40: WD40-like Beta Propeller Repeat; InterPro: I | 96.67 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 96.66 | |
| KOG4389 | 601 | consensus Acetylcholinesterase/Butyrylcholinestera | 96.66 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 96.65 | |
| PF07819 | 225 | PGAP1: PGAP1-like protein; InterPro: IPR012908 The | 96.64 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 96.63 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 96.62 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 96.56 | |
| PLN02733 | 440 | phosphatidylcholine-sterol O-acyltransferase | 96.55 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 96.54 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.54 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 96.54 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 96.49 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 96.47 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 96.45 | |
| PF01674 | 219 | Lipase_2: Lipase (class 2); InterPro: IPR002918 Li | 96.38 | |
| PF00450 | 415 | Peptidase_S10: Serine carboxypeptidase; InterPro: | 96.3 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 96.29 | |
| PF03096 | 283 | Ndr: Ndr family; InterPro: IPR004142 This family c | 96.29 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 96.28 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 96.27 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 96.25 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 96.24 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 96.24 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 96.2 | |
| PF05705 | 240 | DUF829: Eukaryotic protein of unknown function (DU | 96.15 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 96.14 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 96.05 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 96.03 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 96.02 | |
| KOG2237 | 712 | consensus Predicted serine protease [Posttranslati | 96.01 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 95.99 | |
| COG4814 | 288 | Uncharacterized protein with an alpha/beta hydrola | 95.99 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 95.99 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 95.99 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 95.98 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 95.97 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 95.96 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 95.95 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 95.84 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 95.78 | |
| PF07519 | 474 | Tannase: Tannase and feruloyl esterase; InterPro: | 95.78 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 95.77 | |
| KOG2182 | 514 | consensus Hydrolytic enzymes of the alpha/beta hyd | 95.73 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 95.72 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 95.72 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 95.67 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 95.67 | |
| PF08386 | 103 | Abhydrolase_4: TAP-like protein; InterPro: IPR0135 | 95.61 | |
| PF05990 | 233 | DUF900: Alpha/beta hydrolase of unknown function ( | 95.59 | |
| KOG3967 | 297 | consensus Uncharacterized conserved protein [Funct | 95.59 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 95.55 | |
| PF07082 | 250 | DUF1350: Protein of unknown function (DUF1350); In | 95.54 | |
| COG1506 | 620 | DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-pept | 95.48 | |
| PF07676 | 39 | PD40: WD40-like Beta Propeller Repeat; InterPro: I | 95.43 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 95.43 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 95.38 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 95.36 | |
| PF00975 | 229 | Thioesterase: Thioesterase domain; InterPro: IPR00 | 95.34 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 95.32 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 95.28 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 95.26 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 95.19 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 95.17 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 95.13 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 95.05 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 95.03 | |
| KOG2565 | 469 | consensus Predicted hydrolases or acyltransferases | 94.99 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 94.95 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 94.88 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 94.87 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 94.81 | |
| KOG2100 | 755 | consensus Dipeptidyl aminopeptidase [Posttranslati | 94.62 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 94.62 | |
| PF11187 | 224 | DUF2974: Protein of unknown function (DUF2974); In | 94.59 | |
| KOG4388 | 880 | consensus Hormone-sensitive lipase HSL [Lipid tran | 94.38 | |
| PLN03016 | 433 | sinapoylglucose-malate O-sinapoyltransferase | 94.38 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 94.34 | |
| PLN02209 | 437 | serine carboxypeptidase | 94.28 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 94.25 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 94.2 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 94.19 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 94.14 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 94.13 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 94.13 | |
| PRK13613 | 599 | lipoprotein LpqB; Provisional | 93.95 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 93.83 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 93.65 | |
| PF12048 | 310 | DUF3530: Protein of unknown function (DUF3530); In | 93.57 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 93.56 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 93.33 | |
| KOG2931 | 326 | consensus Differentiation-related gene 1 protein ( | 93.27 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 93.24 | |
| KOG1282 | 454 | consensus Serine carboxypeptidases (lysosomal cath | 93.22 | |
| PF05057 | 217 | DUF676: Putative serine esterase (DUF676); InterPr | 93.14 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 93.08 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 93.02 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 93.0 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 92.86 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 92.51 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 92.51 | |
| KOG3975 | 301 | consensus Uncharacterized conserved protein [Funct | 92.36 | |
| COG3319 | 257 | Thioesterase domains of type I polyketide synthase | 92.07 | |
| PRK10252 | 1296 | entF enterobactin synthase subunit F; Provisional | 91.97 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 91.81 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 91.8 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 91.74 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 91.68 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 91.47 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 91.39 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 91.35 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 91.23 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 91.16 | |
| PF04083 | 63 | Abhydro_lipase: Partial alpha/beta-hydrolase lipas | 91.01 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 90.79 | |
| PF07519 | 474 | Tannase: Tannase and feruloyl esterase; InterPro: | 90.58 | |
| PRK13614 | 573 | lipoprotein LpqB; Provisional | 90.48 | |
| COG4782 | 377 | Uncharacterized protein conserved in bacteria [Fun | 90.23 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 90.15 | |
| PF01764 | 140 | Lipase_3: Lipase (class 3); InterPro: IPR002921 Tr | 90.05 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 90.03 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 90.03 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 89.87 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 89.68 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 89.66 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 89.51 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 89.51 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 88.91 | |
| COG1075 | 336 | LipA Predicted acetyltransferases and hydrolases w | 88.81 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 88.07 | |
| cd00741 | 153 | Lipase Lipase. Lipases are esterases that can hydr | 87.93 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 87.75 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 87.57 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 87.18 | |
| PF02450 | 389 | LCAT: Lecithin:cholesterol acyltransferase; InterP | 86.66 | |
| PF03088 | 89 | Str_synth: Strictosidine synthase; InterPro: IPR01 | 86.51 | |
| KOG2541 | 296 | consensus Palmitoyl protein thioesterase [Lipid tr | 86.29 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 86.04 | |
| PF11288 | 207 | DUF3089: Protein of unknown function (DUF3089); In | 85.51 | |
| PRK13613 | 599 | lipoprotein LpqB; Provisional | 84.72 | |
| PF02089 | 279 | Palm_thioest: Palmitoyl protein thioesterase; Inte | 84.17 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 83.91 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 83.6 | |
| PF06259 | 177 | Abhydrolase_8: Alpha/beta hydrolase; InterPro: IPR | 83.55 | |
| PF03283 | 361 | PAE: Pectinacetylesterase | 83.47 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 83.47 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 83.33 | |
| cd00519 | 229 | Lipase_3 Lipase (class 3). Lipases are esterases t | 82.96 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 82.8 | |
| PRK13614 | 573 | lipoprotein LpqB; Provisional | 82.74 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 82.67 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 82.39 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 82.36 | |
| KOG3724 | 973 | consensus Negative regulator of COPII vesicle form | 82.18 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 81.56 | |
| PLN02454 | 414 | triacylglycerol lipase | 81.54 |
| >COG1770 PtrB Protease II [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-113 Score=890.40 Aligned_cols=662 Identities=27% Similarity=0.505 Sum_probs=595.0
Q ss_pred CCCCcccccCceeeeecCccccCCCccccCCC--CHHHHHHHHHHHHHHHHHHcCC-hhHHHHHHHHHhhcCCCCCCCcE
Q 004766 11 LQYPVARRDESVVDDYHGVKIVDPYRWLEDPD--AEEVKDFVQKQVELTDSVLKNC-DVRDKLREKITKLFDSPRYDAPF 87 (732)
Q Consensus 11 ~~~P~~~~~~~~~~~~~g~~~~D~y~wLed~~--~~~~~~~l~~qn~~t~~~l~~~-~~~~~l~~~~~~~~~~~~~~~p~ 87 (732)
+.||.|+|.|+ +++.||.++.|+|+||+|.+ +|+|++||+|||+|+++.++++ +++++|++||+.+++.++.|+|.
T Consensus 4 p~pP~a~k~~~-~~~~hg~~~~D~Y~WlRd~~~~~p~vl~yL~aEN~Yt~~~~a~~~~L~~~if~Ei~~Rik~dd~Svp~ 82 (682)
T COG1770 4 PLPPIAKKVPT-TRTHHGDTRVDDYAWLRDDNWSNPEVLAYLEAENAYTEAVMAHLQPLQKKIFEEIKGRIKEDDLSVPY 82 (682)
T ss_pred CCCCCccccce-eeeecCceeecchHhhhCCcccChHHHHHHHHhhHHHHHhhhhhHHHHHHHHHHHhhhccCcCCCCcc
Confidence 36899999996 89999999999999999998 9999999999999999999999 99999999999999999999999
Q ss_pred EeCCEEEEEEEcCCCCeeEEEEEeCCCC--CceEEeCCCCcCCC-CCEEEEeEEECCCCcEEEEEEeccCCceEEEEEEE
Q 004766 88 KRGNKYFYFHNTGLQPQSVLYVQDSLDA--KAKVLLDPNTLSDD-GTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMR 164 (732)
Q Consensus 88 ~~g~~~~~~~~~~~~~~~~l~~r~~~~~--~~~~l~D~~~l~~~-~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~d 164 (732)
+.|.++||.+...+.+++ +|+|...++ .+++|||+|+++++ ..++++.+++|||++++||+.|..|+|.++|+++|
T Consensus 83 ~~~~~~Yy~r~~~g~~y~-~~~R~~~~g~~~eevlLD~n~~A~g~~f~~Lg~~~~s~D~~~la~s~D~~G~e~y~lr~kd 161 (682)
T COG1770 83 RKGPYEYYSRTEEGKEYP-IYCRQPDEGGEGEEVLLDVNKEAEGHDFFSLGAASISPDHNLLAYSVDVLGDEQYTLRFKD 161 (682)
T ss_pred ccCCeeEEEEecCCCcce-eEEeccCCCCCceeEeecchhccCcccceeeeeeeeCCCCceEEEEEecccccEEEEEEEe
Confidence 999999999988777765 666633333 37999999999977 57899999999999999999999999999999999
Q ss_pred CCCCceecccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCCcccEEEEEECCCCCCCCeEEEecCCCCee
Q 004766 165 IEDQIVEADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKY 244 (732)
Q Consensus 165 l~~g~~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~ 244 (732)
+++|+.+++.+.++. .+++|.+|+++|+|++.++ ..++.+||+|.+|++...+.+||++++ +.|
T Consensus 162 L~tg~~~~d~i~~~~-~~~~Wa~d~~~lfYt~~d~--------------~~rp~kv~~h~~gt~~~~d~lvyeE~d-~~f 225 (682)
T COG1770 162 LATGEELPDEITNTS-GSFAWAADGKTLFYTRLDE--------------NHRPDKVWRHRLGTPGSSDELVYEEKD-DRF 225 (682)
T ss_pred cccccccchhhcccc-cceEEecCCCeEEEEEEcC--------------CCCcceEEEEecCCCCCcceEEEEcCC-CcE
Confidence 999999988887753 8899999999999999876 468999999999998889999999987 567
Q ss_pred EEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCCCCcEEeeecccceEEEEEecCCeEEEEeCCCC
Q 004766 245 IFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDA 324 (732)
Q Consensus 245 ~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~ 324 (732)
..++..|.+.++|++..++.. ++++++++.+... ..+...+....+..+. ..+.|+.+|+.+|.++
T Consensus 226 ~~~v~~s~s~~yi~i~~~~~~--tsE~~ll~a~~p~-----------~~p~vv~pr~~g~eY~-~eh~~d~f~i~sN~~g 291 (682)
T COG1770 226 FLSVGRSRSEAYIVISLGSHI--TSEVRLLDADDPE-----------AEPKVVLPRENGVEYS-VEHGGDRFYILSNADG 291 (682)
T ss_pred EEEeeeccCCceEEEEcCCCc--ceeEEEEecCCCC-----------CceEEEEEcCCCcEEe-eeecCcEEEEEecCCC
Confidence 789999999999999886655 7899999988732 2222222222233333 5667999999999999
Q ss_pred CCceEEEEeC-CCCCCceEeccCCCCCceeEEEEecCCEEEEEEecCCeeEEEEEeCCCCceeeecccc--cceee-Eee
Q 004766 325 PKYKIIRVDL-KEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIE--IGSVN-AIS 400 (732)
Q Consensus 325 ~~~~l~~~d~-~~~~~~~~l~~~~~~~~l~~~~~~~~~~l~~~~~~~g~~~l~~~d~~~g~~~~~l~~~--~g~v~-~~~ 400 (732)
.+++|++.++ .+...|+.++++.++..|+++..+. ++|++..+.++.++|++++..+|+. ..|.++ ..+.. ..+
T Consensus 292 knf~l~~ap~~~~~~~w~~~I~h~~~~~l~~~~~f~-~~lVl~eR~~glp~v~v~~~~~~~~-~~i~f~~~ay~~~l~~~ 369 (682)
T COG1770 292 KNFKLVRAPVSADKSNWRELIPHREDVRLEGVDLFA-DHLVLLERQEGLPRVVVRDRKTGEE-RGIAFDDEAYSAGLSGN 369 (682)
T ss_pred cceEEEEccCCCChhcCeeeeccCCCceeeeeeeec-cEEEEEecccCCceEEEEecCCCce-eeEEecchhhhccccCC
Confidence 9999999998 2334699999999999999999998 8999999999999999999988876 567776 22221 234
Q ss_pred cccCCcEEEEEEecCCCCceEEEEECCCCCCceEEEEeecCCC-CCCCCceEEEEEEEccCCCeeEEEEEEEcCCCCCCC
Q 004766 401 ARREDSVVFISFTSFLIPGIVYQCNLKTETPEMKIFRETIIPG-FDRSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDG 479 (732)
Q Consensus 401 ~s~d~~~l~~~~ss~~~p~~~y~~d~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~s~dG~~~i~~~~~~p~~~~~~~ 479 (732)
..++.+.|+++++|+++|.+++.+|+.+++ .++|+++++++ |+++.|+++++++++.|| ++||++|+++++.+.++
T Consensus 370 ~e~~s~~lR~~ysS~ttP~~~~~~dm~t~e--r~~LkqqeV~~g~dp~~Y~s~riwa~a~dg-v~VPVSLvyrkd~~~~g 446 (682)
T COG1770 370 PEFDSDRLRYSYSSMTTPATLFDYDMATGE--RTLLKQQEVPGGFDPEDYVSRRIWATADDG-VQVPVSLVYRKDTKLDG 446 (682)
T ss_pred CCCCCccEEEEeecccccceeEEeeccCCc--EEEEEeccCCCCCChhHeEEEEEEEEcCCC-cEeeEEEEEecccCCCC
Confidence 456889999999999999999999999995 89999999996 999999999999999999 99999999999988899
Q ss_pred CccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCccHHHHHHHHHHHHHHcCCCC
Q 004766 480 SHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQ 559 (732)
Q Consensus 480 ~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d 559 (732)
++||+||+||+||+++.+.|+..++++|+ |||+++++|+||||+.|+.||++|+..+|+|+|+||++|+++|+++|+++
T Consensus 447 ~~p~lLygYGaYG~s~~p~Fs~~~lSLlD-RGfiyAIAHVRGGgelG~~WYe~GK~l~K~NTf~DFIa~a~~Lv~~g~~~ 525 (682)
T COG1770 447 SAPLLLYGYGAYGISMDPSFSIARLSLLD-RGFVYAIAHVRGGGELGRAWYEDGKLLNKKNTFTDFIAAARHLVKEGYTS 525 (682)
T ss_pred CCcEEEEEeccccccCCcCcccceeeeec-CceEEEEEEeecccccChHHHHhhhhhhccccHHHHHHHHHHHHHcCcCC
Confidence 99999999999999999999998899999 99999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCccccccccc-----CCCCCccccccCCCCCHHHHHHHHhcCcccC
Q 004766 560 SRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHK-----FTIGHAWVSDFGCSEEEEEFYWLIKYSPLHN 634 (732)
Q Consensus 560 ~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~-----~~~~~~~~~~~g~p~~~~~~~~~~~~sp~~~ 634 (732)
+++|+++|+|+||+|++++++++|++|+++|+.|||+|++++|. +|.. .| .|||||.+++.+++|++||||.|
T Consensus 526 ~~~i~a~GGSAGGmLmGav~N~~P~lf~~iiA~VPFVDvltTMlD~slPLT~~-E~-~EWGNP~d~e~y~yikSYSPYdN 603 (682)
T COG1770 526 PDRIVAIGGSAGGMLMGAVANMAPDLFAGIIAQVPFVDVLTTMLDPSLPLTVT-EW-DEWGNPLDPEYYDYIKSYSPYDN 603 (682)
T ss_pred ccceEEeccCchhHHHHHHHhhChhhhhheeecCCccchhhhhcCCCCCCCcc-ch-hhhCCcCCHHHHHHHhhcCchhc
Confidence 99999999999999999999999999999999999999998874 2332 34 89999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeCCCCCCCCCchHHHHHH
Q 004766 635 VRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDE 714 (732)
Q Consensus 635 ~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~ 714 (732)
++. +.|||+|+++|.+|+||.+|++.|++++|++. ++++.|++|++.+++||++.+++.+.+++
T Consensus 604 V~a---------~~YP~ilv~~Gl~D~rV~YwEpAKWvAkLR~~-------~td~~plLlkt~M~aGHgG~SgRf~~lee 667 (682)
T COG1770 604 VEA---------QPYPAILVTTGLNDPRVQYWEPAKWVAKLREL-------KTDGNPLLLKTNMDAGHGGASGRFQRLEE 667 (682)
T ss_pred ccc---------CCCCceEEEccccCCccccchHHHHHHHHhhc-------ccCCCcEEEEecccccCCCCCCchHHHHH
Confidence 998 49999999999999999999999999999998 77788999999999999999999999999
Q ss_pred HHHHHHHHHHHhCC
Q 004766 715 AADRYGFMAKMLGA 728 (732)
Q Consensus 715 ~~~~~~fl~~~l~~ 728 (732)
.+..++|+.+.++.
T Consensus 668 ~A~eYaF~l~~~~~ 681 (682)
T COG1770 668 IAFEYAFLLKLAGT 681 (682)
T ss_pred HHHHHHHHhhhccC
Confidence 99999999998764
|
|
| >KOG2237 consensus Predicted serine protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-107 Score=836.90 Aligned_cols=701 Identities=51% Similarity=0.847 Sum_probs=567.0
Q ss_pred CCCCCcccccCceeeeecCccccCCCccccCCCCHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCCCcEEe
Q 004766 10 SLQYPVARRDESVVDDYHGVKIVDPYRWLEDPDAEEVKDFVQKQVELTDSVLKNCDVRDKLREKITKLFDSPRYDAPFKR 89 (732)
Q Consensus 10 ~~~~P~~~~~~~~~~~~~g~~~~D~y~wLed~~~~~~~~~l~~qn~~t~~~l~~~~~~~~l~~~~~~~~~~~~~~~p~~~ 89 (732)
+..||+++|+..+++.+||+++.|||+||||+++.++.+||++||.||+++|+.....++|+.||+.++.++.+++|.+.
T Consensus 3 ~~~~P~~~k~e~~~~~~hg~~v~Dpy~Wl~d~d~~~~~~fv~~en~~t~~vl~~~e~~~kl~~em~~~i~ye~~~~p~r~ 82 (712)
T KOG2237|consen 3 PLQYPVARKDESVAEDFHGVTVEDPYRWLEDPDDTEMKEFVEAENKYTDAVLEDTETKEKLFSEMTKRIDYEIITPPLRW 82 (712)
T ss_pred CCCCCCcccccchhhhcCCceecCcchhhcCCcHHHHHHHHHHhhhhhHHHHhccHHHHHHHHHhhhccCccccCCcccc
Confidence 45688888877679999999999999999999999999999999999999999997777999999999999999999999
Q ss_pred CCEEEEEEEcCCCCeeEEEEEeCCCCCceEEeCCCCcCCCCCEEEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCc
Q 004766 90 GNKYFYFHNTGLQPQSVLYVQDSLDAKAKVLLDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQI 169 (732)
Q Consensus 90 g~~~~~~~~~~~~~~~~l~~r~~~~~~~~~l~D~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~ 169 (732)
|++|||.++.+++ |+++|+|+..+.++++++|+|.+..+++..+..-++|-|++++++.++..|+++..|.....+.|.
T Consensus 83 G~~yyY~~n~~lk-q~vl~~rr~~~~e~~~~ld~~~~~dd~tV~Ld~~~~aed~~Y~~~gls~~spD~~~ia~~~~~~~~ 161 (712)
T KOG2237|consen 83 GPWYYYFYNTGLK-QYVLYCRRLLEKEEEVFLDPNALGDDGTVLLDTNQIAEDFKYFAYGLSESSPDHKYIAYTKDTEGK 161 (712)
T ss_pred CCEEEEEEcCCce-ehhHHHHhhhhcccceecCCccCCCCceEEechhhhhhcCCceEEeecccCCCceEEEEEEcCCCC
Confidence 9999999999888 788998887655666666666665555444444444444444444444444444444444433333
Q ss_pred eecccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeE
Q 004766 170 VEADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGH 249 (732)
Q Consensus 170 ~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~ 249 (732)
.+.+.....+++.++|.+|++.++|.+....+ ..+.-.+..+...++++||+|.+|+.+.+|++++++.+++.+.....
T Consensus 162 e~~~~v~~~~~~~~~~~~~~~g~~y~~w~~~d-g~~l~~~t~~~~~r~hkvy~h~~Gtdq~~Dvl~~~e~d~~~~vf~~~ 240 (712)
T KOG2237|consen 162 ELFTVVIDVKFSGPVWTHDGKGVSYLAWAKQD-GEDLLYGTEDENNRPHKVYYHTLGTDQSEDVLLYEEKDEPKHVFISE 240 (712)
T ss_pred ccceeeeeeccCCceeeccCCceEeeeecccC-CceeeeeeeccccCcceEEEEecccCCCcceEEEecCCCCeEEEEEE
Confidence 33222333334445555555555554433211 11111223344689999999999999999999999999888877777
Q ss_pred EecCCcEEEEEEecCCcceEEEEEEeCCCCCCCccc-ccccCCCCCcEEeeecccceEEEEEecCCeEEEEeCCCCCCce
Q 004766 250 VTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEG-FKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYK 328 (732)
Q Consensus 250 ~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~ 328 (732)
.+.+|++++...+..++..+.+|.+|+.....+++. + .++...+.-+...+.++..++..++|++|.+++++.
T Consensus 241 ~kD~~~~~i~si~~t~s~~~~vf~~d~~~~~~gl~~~~------~~~v~~v~~f~eh~~fi~~~~t~~~~~tn~~~p~y~ 314 (712)
T KOG2237|consen 241 TKDSGFYTINSISETCSPVNKVFLCDLSSPSDGLELLI------LPRVKGVDCFVEHYDFITNEGTEFYFLTNKDAPNYY 314 (712)
T ss_pred EecCceEEEEEeeccCCccceEEEEecccccCCcchhe------eeccchhhhhhhhhhheeccCcceeeeccCCCCcee
Confidence 777777777777777766789999998775433221 1 112222333333344567788999999999999999
Q ss_pred EEEEeCCCC--CCceEeccCCCCCceeEEEEecCCEEEEEEecCCeeEEEEEeCCCCceeeecccccceeeEeecccCCc
Q 004766 329 IIRVDLKEP--NDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDS 406 (732)
Q Consensus 329 l~~~d~~~~--~~~~~l~~~~~~~~l~~~~~~~~~~l~~~~~~~g~~~l~~~d~~~g~~~~~l~~~~g~v~~~~~s~d~~ 406 (732)
+.++++..+ ..|++++++.+...+..+...+++.+++....+....+.+.++.+|..++.+++|.+++..+....+.+
T Consensus 315 l~r~~~~~~~~~~W~~v~~e~~~~vl~~~~~~~~~~ll~~~~~~l~~i~q~~~~l~g~~~~~fpLpv~sv~~~~g~~~~~ 394 (712)
T KOG2237|consen 315 LLRIDVKEPEESKWETVFAEHEKDVLEDVDMVNDNLLLVCYMSDLKHILQVRDLLDGSLLRSFPLPVGSVSGTSGDFKSS 394 (712)
T ss_pred EEeeeccCccccccceeecccchhhhhhhhhhcCceEEEEEecCchhhccccccccCceeeeecCCCCcccccccCCCCc
Confidence 999998776 369999998878888989888867777777777655555556556777789999999888887788889
Q ss_pred EEEEEEecCCCCceEEEEECCCCCCceEEEEeecC--CCCCCCCceEEEEEEEccCCCeeEEEEEEEcCCCCCCCCccEE
Q 004766 407 VVFISFTSFLIPGIVYQCNLKTETPEMKIFRETII--PGFDRSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCL 484 (732)
Q Consensus 407 ~l~~~~ss~~~p~~~y~~d~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~s~dG~~~i~~~~~~p~~~~~~~~~P~v 484 (732)
+++|.++|+.+|+.+|.||++.++.+..++.+... |+|+.+.|.+++++++|+|| ++||++|++.++.+.+++.|++
T Consensus 395 ~~~f~~sS~l~P~~iy~yDl~~~~~e~~vf~e~~~~lpg~~~s~y~~~r~~~~SkDG-t~VPM~Iv~kk~~k~dg~~P~L 473 (712)
T KOG2237|consen 395 TIRFQFSSFLTPGSIYDYDLANGKPEPSVFREITVVLPGFDASDYVVERIEVSSKDG-TKVPMFIVYKKDIKLDGSKPLL 473 (712)
T ss_pred eEEEEEeccCCCCeEEEeeccCCCCCCcceeeeccccCcccccceEEEEEEEecCCC-CccceEEEEechhhhcCCCceE
Confidence 99999999999999999999988545566666554 78999999999999999999 9999999999998889999999
Q ss_pred EEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCccHHHHHHHHHHHHHHcCCCCCCcEE
Q 004766 485 LYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSRKLC 564 (732)
Q Consensus 485 v~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~ 564 (732)
||+||||+.++.|.|..++..+++ +|++++.+|+|||||+|+.||+.|+..+|+|.|+||++|++||+++||+.|+|++
T Consensus 474 LygYGay~isl~p~f~~srl~lld-~G~Vla~a~VRGGGe~G~~WHk~G~lakKqN~f~Dfia~AeyLve~gyt~~~kL~ 552 (712)
T KOG2237|consen 474 LYGYGAYGISLDPSFRASRLSLLD-RGWVLAYANVRGGGEYGEQWHKDGRLAKKQNSFDDFIACAEYLVENGYTQPSKLA 552 (712)
T ss_pred EEEecccceeeccccccceeEEEe-cceEEEEEeeccCcccccchhhccchhhhcccHHHHHHHHHHHHHcCCCCcccee
Confidence 999999999999999999999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred EEecChhHHHHHHHHhhCCCeeeEEEEcCCcccccccccCCCCCccccccCCCCCHHHHHH---HHhcCcccCCCCCCCC
Q 004766 565 IEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHAWVSDFGCSEEEEEFYW---LIKYSPLHNVRRPWEQ 641 (732)
Q Consensus 565 i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~~~~~~~g~p~~~~~~~~---~~~~sp~~~~~~~~~~ 641 (732)
+.|+|+||+|++++++++||+|+|+|+.|||+||++++.+++++.|..+||+..+|+.+++ +..|||++|+++.
T Consensus 553 i~G~SaGGlLvga~iN~rPdLF~avia~VpfmDvL~t~~~tilplt~sd~ee~g~p~~~~~~~~i~~y~pv~~i~~q--- 629 (712)
T KOG2237|consen 553 IEGGSAGGLLVGACINQRPDLFGAVIAKVPFMDVLNTHKDTILPLTTSDYEEWGNPEDFEDLIKISPYSPVDNIKKQ--- 629 (712)
T ss_pred EecccCccchhHHHhccCchHhhhhhhcCcceehhhhhccCccccchhhhcccCChhhhhhhheecccCccCCCchh---
Confidence 9999999999999999999999999999999999999999999999876655544444444 4555555555553
Q ss_pred CCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeCCCCCCCCCchHHHHHHHHHHHHH
Q 004766 642 NPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGF 721 (732)
Q Consensus 642 ~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~f 721 (732)
..||.|||+++++|+||+++|+.||+++||++.+.+++ +.+|+.+++.+++||+...++.+.+++.+..++|
T Consensus 630 -----~~YPS~lvtta~hD~RV~~~~~~K~vAklre~~~~~~~---q~~pvll~i~~~agH~~~~~~~k~~~E~a~~yaF 701 (712)
T KOG2237|consen 630 -----VQYPSMLVTTADHDDRVGPLESLKWVAKLREATCDSLK---QTNPVLLRIETKAGHGAEKPRFKQIEEAAFRYAF 701 (712)
T ss_pred -----ccCcceEEeeccCCCcccccchHHHHHHHHHHhhcchh---cCCCEEEEEecCCccccCCchHHHHHHHHHHHHH
Confidence 35999999999999999999999999999998766542 4589999999999999999999999999999999
Q ss_pred HHHHhCCCcC
Q 004766 722 MAKMLGASWV 731 (732)
Q Consensus 722 l~~~l~~~~~ 731 (732)
|.+.++..|.
T Consensus 702 l~K~~~~~~~ 711 (712)
T KOG2237|consen 702 LAKMLNSDWI 711 (712)
T ss_pred HHHHhcCccC
Confidence 9999998775
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-102 Score=877.92 Aligned_cols=665 Identities=24% Similarity=0.425 Sum_probs=564.5
Q ss_pred CCcccccCceeeeecCccccCCCccccCC--CCHHHHHHHHHHHHHHHHHHcCC-hhHHHHHHHHHhhcCCCCCCCcEEe
Q 004766 13 YPVARRDESVVDDYHGVKIVDPYRWLEDP--DAEEVKDFVQKQVELTDSVLKNC-DVRDKLREKITKLFDSPRYDAPFKR 89 (732)
Q Consensus 13 ~P~~~~~~~~~~~~~g~~~~D~y~wLed~--~~~~~~~~l~~qn~~t~~~l~~~-~~~~~l~~~~~~~~~~~~~~~p~~~ 89 (732)
||.|+++|+ ++++||++++|||+||||. ++|+|++||++||+||+++|+++ +++++|+++|++++..+++++|.+.
T Consensus 2 pP~a~~~~~-~~~~hg~~~~DpY~WLed~~r~~~~v~~~l~~en~~t~~~l~~~~~~~~~l~~~~~~~~~~~~~~~p~~~ 80 (686)
T PRK10115 2 LPKAARIPH-AMTLHGDTRIDNYYWLRDDTRSQPEVLDYLHQENSYGHRVMASQQALQDRILKEIIDRIPQREVSAPYIK 80 (686)
T ss_pred cCCCCCCCe-eEEeCCCEeccCchHhhCCCCCCHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHhhcccccCCCCEEE
Confidence 788999996 8999999999999999996 59999999999999999999996 9999999999999999999999999
Q ss_pred CCEEEEEEEcCCCCeeEEEEEeCC-C---CCceEEeCCCCcCCC-CCEEEEeEEECCCCcEEEEEEeccCCceEEEEEEE
Q 004766 90 GNKYFYFHNTGLQPQSVLYVQDSL-D---AKAKVLLDPNTLSDD-GTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMR 164 (732)
Q Consensus 90 g~~~~~~~~~~~~~~~~l~~r~~~-~---~~~~~l~D~~~l~~~-~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~d 164 (732)
|+++||+++..+. ++.||+|... + +.+++|||+|+++++ +++.++.+.|||||++|||+.+.+|+|+++|+++|
T Consensus 81 g~~~y~~~~~~g~-~~~~~~r~~~~~~~~~~~~~llD~n~~a~~~~~~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d 159 (686)
T PRK10115 81 NGYRYRHIYEPGC-EYAIYQRQSAFSEEWDEWETLLDANKRAAHSEFYTLGGMAITPDNTIMALAEDFLSRRQYGIRFRN 159 (686)
T ss_pred CCEEEEEEEcCCC-ccEEEEEecCCCCCCCCCEEEEcchhhccCCCcEEEeEEEECCCCCEEEEEecCCCcEEEEEEEEE
Confidence 9998888876665 4778887753 2 347999999999644 67999999999999999999999999999999999
Q ss_pred CCCCceecccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCCcccEEEEEECCCCCCCCeEEEecCCCCee
Q 004766 165 IEDQIVEADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKY 244 (732)
Q Consensus 165 l~~g~~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~ 244 (732)
+.+|+.+++.+.+++ ..++|++|++.|+|++.+.. ..++.+||+|++||++.++.+|+++.++..
T Consensus 160 ~~tg~~l~~~i~~~~-~~~~w~~D~~~~~y~~~~~~-------------~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~- 224 (686)
T PRK10115 160 LETGNWYPELLDNVE-PSFVWANDSWTFYYVRKHPV-------------TLLPYQVWRHTIGTPASQDELVYEEKDDTF- 224 (686)
T ss_pred CCCCCCCCccccCcc-eEEEEeeCCCEEEEEEecCC-------------CCCCCEEEEEECCCChhHCeEEEeeCCCCE-
Confidence 999997777777665 56999999999999987431 247789999999999888999999776543
Q ss_pred EEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCCCCcEEeeecccceEEEEEecCCeEEEEeCCCC
Q 004766 245 IFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDA 324 (732)
Q Consensus 245 ~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~ 324 (732)
......|.|++++++.+.... .++++++++.... ..++..+....+..+.. .+.++.||+.+|.++
T Consensus 225 ~~~~~~s~d~~~l~i~~~~~~--~~~~~l~~~~~~~-----------~~~~~~~~~~~~~~~~~-~~~~~~ly~~tn~~~ 290 (686)
T PRK10115 225 YVSLHKTTSKHYVVIHLASAT--TSEVLLLDAELAD-----------AEPFVFLPRRKDHEYSL-DHYQHRFYLRSNRHG 290 (686)
T ss_pred EEEEEEcCCCCEEEEEEECCc--cccEEEEECcCCC-----------CCceEEEECCCCCEEEE-EeCCCEEEEEEcCCC
Confidence 345666779999987776655 4667777753211 11122233333444443 355789999999999
Q ss_pred CCceEEEEeCCCCCCceEeccCCCCCceeEEEEecCCEEEEEEecCCeeEEEEEeCCCCceeeecccc-cceeeEee--c
Q 004766 325 PKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIE-IGSVNAIS--A 401 (732)
Q Consensus 325 ~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~~l~~~~~~~g~~~l~~~d~~~g~~~~~l~~~-~g~v~~~~--~ 401 (732)
++++|+.+++.+...|+.|+++.++..|+++.++. ++|++...+++.++|+++++.+++ ...|+++ ...+..+. .
T Consensus 291 ~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~-~~l~~~~~~~g~~~l~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ 368 (686)
T PRK10115 291 KNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFT-DWLVVEERQRGLTSLRQINRKTRE-VIGIAFDDPAYVTWIAYNP 368 (686)
T ss_pred CCceEEEecCCCcccCeEEECCCCCCEEEEEEEEC-CEEEEEEEeCCEEEEEEEcCCCCc-eEEecCCCCceEeeecccC
Confidence 99999999998544599999987667899999996 899999999999999999986444 3666643 22233333 3
Q ss_pred ccCCcEEEEEEecCCCCceEEEEECCCCCCceEEEEeecCCCCCCCCceEEEEEEEccCCCeeEEEEEEEcCCCCCCCCc
Q 004766 402 RREDSVVFISFTSFLIPGIVYQCNLKTETPEMKIFRETIIPGFDRSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSH 481 (732)
Q Consensus 402 s~d~~~l~~~~ss~~~p~~~y~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~s~dG~~~i~~~~~~p~~~~~~~~~ 481 (732)
+++++.++++++|+++|+++|.+|+.+++ .++++....+.+++..+.+++++++|.|| ++||++++++++...+++.
T Consensus 369 ~~~~~~~~~~~ss~~~P~~~y~~d~~~~~--~~~l~~~~~~~~~~~~~~~e~v~~~s~DG-~~Ip~~l~~~~~~~~~~~~ 445 (686)
T PRK10115 369 EPETSRLRYGYSSMTTPDTLFELDMDTGE--RRVLKQTEVPGFDAANYRSEHLWITARDG-VEVPVSLVYHRKHFRKGHN 445 (686)
T ss_pred CCCCceEEEEEecCCCCCEEEEEECCCCc--EEEEEecCCCCcCccccEEEEEEEECCCC-CEEEEEEEEECCCCCCCCC
Confidence 46778899999999999999999998874 77888766666888889999999999999 9999999988775556788
Q ss_pred cEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCccHHHHHHHHHHHHHHcCCCCCC
Q 004766 482 PCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSR 561 (732)
Q Consensus 482 P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ 561 (732)
|+||++||||+.+..+.|++.++.|++ +||+|+++|+|||||||++|++++.+.+|.++++||++|++||+++|++||+
T Consensus 446 P~ll~~hGg~~~~~~p~f~~~~~~l~~-rG~~v~~~n~RGs~g~G~~w~~~g~~~~k~~~~~D~~a~~~~Lv~~g~~d~~ 524 (686)
T PRK10115 446 PLLVYGYGSYGASIDADFSFSRLSLLD-RGFVYAIVHVRGGGELGQQWYEDGKFLKKKNTFNDYLDACDALLKLGYGSPS 524 (686)
T ss_pred CEEEEEECCCCCCCCCCccHHHHHHHH-CCcEEEEEEcCCCCccCHHHHHhhhhhcCCCcHHHHHHHHHHHHHcCCCChH
Confidence 999999999999999999999887777 9999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCccccccccc---CCCCCccccccCCCCCHHHHHHHHhcCcccCCCCC
Q 004766 562 KLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHK---FTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRP 638 (732)
Q Consensus 562 ~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~---~~~~~~~~~~~g~p~~~~~~~~~~~~sp~~~~~~~ 638 (732)
||+|+|+|+||+|++++++++|++|+|+|+.+|++|+++++. ++....|..|||+|.+++.+++|+++||++|+++.
T Consensus 525 rl~i~G~S~GG~l~~~~~~~~Pdlf~A~v~~vp~~D~~~~~~~~~~p~~~~~~~e~G~p~~~~~~~~l~~~SP~~~v~~~ 604 (686)
T PRK10115 525 LCYGMGGSAGGMLMGVAINQRPELFHGVIAQVPFVDVVTTMLDESIPLTTGEFEEWGNPQDPQYYEYMKSYSPYDNVTAQ 604 (686)
T ss_pred HeEEEEECHHHHHHHHHHhcChhheeEEEecCCchhHhhhcccCCCCCChhHHHHhCCCCCHHHHHHHHHcCchhccCcc
Confidence 999999999999999999999999999999999999998863 23334467899999999999999999999999983
Q ss_pred CCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeCCCCCCCCCchHHHHHHHHHH
Q 004766 639 WEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADR 718 (732)
Q Consensus 639 ~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~ 718 (732)
.+|++||+||.+|+|||++|+.||+++|+++ .....++.+++.+++||+....+.+.+++.+..
T Consensus 605 ---------~~P~lLi~~g~~D~RV~~~~~~k~~a~Lr~~-------~~~~~~vl~~~~~~~GHg~~~~r~~~~~~~A~~ 668 (686)
T PRK10115 605 ---------AYPHLLVTTGLHDSQVQYWEPAKWVAKLREL-------KTDDHLLLLCTDMDSGHGGKSGRFKSYEGVAME 668 (686)
T ss_pred ---------CCCceeEEecCCCCCcCchHHHHHHHHHHhc-------CCCCceEEEEecCCCCCCCCcCHHHHHHHHHHH
Confidence 6777999999999999999999999999987 122334666666999999888888889999999
Q ss_pred HHHHHHHhCCCc
Q 004766 719 YGFMAKMLGASW 730 (732)
Q Consensus 719 ~~fl~~~l~~~~ 730 (732)
++||..+++..+
T Consensus 669 ~aFl~~~~~~~~ 680 (686)
T PRK10115 669 YAFLIALAQGTL 680 (686)
T ss_pred HHHHHHHhCCcC
Confidence 999999998764
|
|
| >COG1505 Serine proteases of the peptidase family S9A [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-98 Score=767.03 Aligned_cols=635 Identities=37% Similarity=0.621 Sum_probs=528.1
Q ss_pred ccCCCccccCCCCHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCCCcEEeCCEEEEEEEcCCCCeeEEEEE
Q 004766 31 IVDPYRWLEDPDAEEVKDFVQKQVELTDSVLKNCDVRDKLREKITKLFDSPRYDAPFKRGNKYFYFHNTGLQPQSVLYVQ 110 (732)
Q Consensus 31 ~~D~y~wLed~~~~~~~~~l~~qn~~t~~~l~~~~~~~~l~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~l~~r 110 (732)
.+|||+||||++++|+++|+++||+.|..+|...+.++.+.+++.+++..++++.|...++++|+++++..+++. +|+|
T Consensus 2 ~~DPy~wlEd~~~~eal~wv~~~N~~t~~~L~~~~~~a~~~~~~~~l~d~~~~~~~~~~~~~~ynFw~D~~~p~G-lwr~ 80 (648)
T COG1505 2 VPDPYRWLEDLDSAEALKWVEAQNAKTREFLGEDSARAASDKRLLELWDYEDIPIPFERGGRYYNFWQDALYPRG-LYRR 80 (648)
T ss_pred CCCcchhhhcCCcHHHHHHHHhhhhHHHHHhhcchhhHHHHHHHHHHhhccccCcceeccceeEEeeccccCcce-eEEe
Confidence 579999999999999999999999999999999999999999999999998899999999999999999888864 8998
Q ss_pred eCCC------CCceEEeCCCCcCCCC--CEEEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecccccceeeee
Q 004766 111 DSLD------AKAKVLLDPNTLSDDG--TAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWFKFSS 182 (732)
Q Consensus 111 ~~~~------~~~~~l~D~~~l~~~~--~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~~~~~~~~ 182 (732)
+..+ ++.++|+|+++|++.. .+.+++.+.+||+++++|+.+.+|++...++++|++||+.+.+. +..+.+
T Consensus 81 ttl~syrs~~p~WevLiD~d~Ls~~~g~~v~~~Gas~~~~~~R~l~s~S~gG~D~~~~re~Dlet~~fv~~~--~f~~~~ 158 (648)
T COG1505 81 TTLETYRSAKPEWEVLIDVDALSADLGDKVALGGASVLPDGTRLLYSLSIGGSDAGITREFDLETGEFVEEE--GFKFPG 158 (648)
T ss_pred ecceeecccCCCceeecCHHHHhhhcCCcEEEccceeCCCCCEEEEEecCCCCcceEEEEEEecccccccCC--Cccccc
Confidence 7543 5679999999998763 78899999999999999999999999999999999999877664 333456
Q ss_pred EEEEeCCcEEEEEEecCCCCCCCCCCCCcccCCcccEEEEE---ECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEE
Q 004766 183 IAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYH---FLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVM 259 (732)
Q Consensus 183 ~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~ 259 (732)
+.|..++ .++|++... .+..++++++..++++ ++.+++..++.|+...+.+.+.....+|.|+++.+.
T Consensus 159 ~~wld~d-~~~~~~~~~--------~~e~T~sGy~~~~~~~krg~~f~~~~~dv~V~a~~~~~~~~~~~~~~~~~~~f~~ 229 (648)
T COG1505 159 ISWLDDD-GVFVSRYWR--------PKEKTPSGYPRVVKRLKRGKLFEGQEGDVMVNARGDQDPWGFRLVLSEDGDFFML 229 (648)
T ss_pred eEEecCC-CEEEecccC--------CcccCccCCchHhhhhhhcccccCCCCceEEecccccCCccceEEEeeccchhhh
Confidence 9999777 777876544 3344556777655444 455677778888766554444455666666666544
Q ss_pred EEecCCcceEEEEEEeCCCCCCCcccccccCCCCCcEEeeecccceEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCC
Q 004766 260 CIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPND 339 (732)
Q Consensus 260 ~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~ 339 (732)
...-..+....++ +++-+. . ...+..++.....++.....+...+++.+.... ..+..
T Consensus 230 ~~~~~~~~~~~~~-l~~p~~-~----------~~~~~~l~~~~r~dw~~~~~~~g~l~l~~~e~~----------~~g~~ 287 (648)
T COG1505 230 SLWLGTSGKGLIK-LGLPDK-V----------GYEWGKLVNTLRADWTFADVDYGLLYLLTDEDL----------ELGKV 287 (648)
T ss_pred eeeEeccCCCcee-ccCCcc-c----------cceeeeeeEeecccccccCcccceEEEEehhcc----------ccCce
Confidence 4332222222333 222110 0 111223332222222222222234444433322 22222
Q ss_pred ceEeccCCCCCceeEEEEecCCEEEEEEecCCeeEEEEEeCCCCceeeecccc-cceeeEeecccCCcEEEEEEecCCCC
Q 004766 340 WFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIE-IGSVNAISARREDSVVFISFTSFLIP 418 (732)
Q Consensus 340 ~~~l~~~~~~~~l~~~~~~~~~~l~~~~~~~g~~~l~~~d~~~g~~~~~l~~~-~g~v~~~~~s~d~~~l~~~~ss~~~p 418 (732)
...++|.. ...++++.+++ +++++...+|..+++.+++.. |...+.|.++ .+.+..++.+.+++.+++.+++|++|
T Consensus 288 ~a~~~P~~-~~~le~v~tt~-~~~va~~l~nv~~~l~v~~~~-g~~~~~v~l~~~ga~~~~~~~~~g~ev~l~~t~F~tP 364 (648)
T COG1505 288 IAEFIPEE-EQSLEQVVTTK-DKLVAGTLDNVSGRLEVYDLK-GERIEEVELPPPGALGMGSADKDGDEVFLAFTSFTTP 364 (648)
T ss_pred eEEecCCc-ccceeeeEEEc-CeEEeeeehhccceEEEeccC-ceEeeecccCCccceeeccCCCCCcEEEEEeecccCC
Confidence 33455554 68899999998 899999999999999999986 7777888887 77776566777899999999999999
Q ss_pred ceEEEEECCCCCCceEEEEeecCCCCCCCCceEEEEEEEccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCC
Q 004766 419 GIVYQCNLKTETPEMKIFRETIIPGFDRSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPS 498 (732)
Q Consensus 419 ~~~y~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~ 498 (732)
+++|++++.+++ +++++.+.. .||++++++++.+.+|.|| ++||++|++ |+.+.+ ++|++||+||||+.+..|.
T Consensus 365 ~~~~r~~~~~~e--Le~ik~~p~-~FDa~~~~veQ~~atSkDG-T~IPYFiv~-K~~~~d-~~pTll~aYGGF~vsltP~ 438 (648)
T COG1505 365 STLYRLDLFGGE--LEVIREQPV-QFDADNYEVEQFFATSKDG-TRIPYFIVR-KGAKKD-ENPTLLYAYGGFNISLTPR 438 (648)
T ss_pred CceEEEecCCce--ehhhhhccC-CcCccCceEEEEEEEcCCC-ccccEEEEe-cCCcCC-CCceEEEeccccccccCCc
Confidence 999999998885 777776433 6999999999999999999 999999999 887777 9999999999999999999
Q ss_pred cChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHH
Q 004766 499 FSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGAC 578 (732)
Q Consensus 499 ~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~ 578 (732)
|++.+..||+ +|++++++|+|||||||++||+++++.+++|.|+||+|+++.|+++|++.|++|+|+|+|+||+|++++
T Consensus 439 fs~~~~~WLe-rGg~~v~ANIRGGGEfGp~WH~Aa~k~nrq~vfdDf~AVaedLi~rgitspe~lgi~GgSNGGLLvg~a 517 (648)
T COG1505 439 FSGSRKLWLE-RGGVFVLANIRGGGEFGPEWHQAGMKENKQNVFDDFIAVAEDLIKRGITSPEKLGIQGGSNGGLLVGAA 517 (648)
T ss_pred cchhhHHHHh-cCCeEEEEecccCCccCHHHHHHHhhhcchhhhHHHHHHHHHHHHhCCCCHHHhhhccCCCCceEEEee
Confidence 9999988888 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCCeeeEEEEcCCcccccccccCCCCCccccccCCCCCHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEeeC
Q 004766 579 INQRPDLFGCALAHVGVMDMLRYHKFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTAD 658 (732)
Q Consensus 579 ~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~ 658 (732)
++|+||+|.|+||.+|++||++++.++.|..|+.|||+|++|+++..|.+||||+|++.. +.|||+||++|.
T Consensus 518 lTQrPelfgA~v~evPllDMlRYh~l~aG~sW~~EYG~Pd~P~d~~~l~~YSPy~nl~~g--------~kYP~~LITTs~ 589 (648)
T COG1505 518 LTQRPELFGAAVCEVPLLDMLRYHLLTAGSSWIAEYGNPDDPEDRAFLLAYSPYHNLKPG--------QKYPPTLITTSL 589 (648)
T ss_pred eccChhhhCceeeccchhhhhhhcccccchhhHhhcCCCCCHHHHHHHHhcCchhcCCcc--------ccCCCeEEEccc
Confidence 999999999999999999999999999999999999999999999999999999999986 689999999999
Q ss_pred CCCCCCchHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeCCCCCCCCCchHHHHHHHHHHHHHHHHHhC
Q 004766 659 HDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLG 727 (732)
Q Consensus 659 ~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 727 (732)
+|+||+|+|++||+++|+++ +.|+.+++..++||+...+..+.+++.+..++||.+.|+
T Consensus 590 ~DDRVHPaHarKfaa~L~e~----------~~pv~~~e~t~gGH~g~~~~~~~A~~~a~~~afl~r~L~ 648 (648)
T COG1505 590 HDDRVHPAHARKFAAKLQEV----------GAPVLLREETKGGHGGAAPTAEIARELADLLAFLLRTLG 648 (648)
T ss_pred ccccccchHHHHHHHHHHhc----------CCceEEEeecCCcccCCCChHHHHHHHHHHHHHHHHhhC
Confidence 99999999999999999998 899999999999999999988889999999999999885
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-54 Score=469.75 Aligned_cols=404 Identities=34% Similarity=0.577 Sum_probs=325.1
Q ss_pred CCcccccCceeeeecCccccCCCccccCCCCHHHHHHHHHHHHHHHHHHcCC-hhHHHHHHHHHhhcCCCCCCCcEEeCC
Q 004766 13 YPVARRDESVVDDYHGVKIVDPYRWLEDPDAEEVKDFVQKQVELTDSVLKNC-DVRDKLREKITKLFDSPRYDAPFKRGN 91 (732)
Q Consensus 13 ~P~~~~~~~~~~~~~g~~~~D~y~wLed~~~~~~~~~l~~qn~~t~~~l~~~-~~~~~l~~~~~~~~~~~~~~~p~~~g~ 91 (732)
||++++.|+ ++++||+++.|||+||||.++|+|++||++||+||+++|+++ ++++.|+++|++++..++.++|.+.|+
T Consensus 1 P~~~~~~~~-~~~~hg~~~~DpY~WLed~~~~~v~~~~~~en~~t~~~l~~~~~~~~~l~~~~~~~~~~~~~~~p~~~g~ 79 (414)
T PF02897_consen 1 PPTARKPPV-VETLHGVTITDPYRWLEDDDSPEVLAWLKAENAYTEAYLAQLKPLREKLYEELKARINEDRESVPVRRGG 79 (414)
T ss_dssp S-TTS-TTS-EEEETTEEEE-TTGGGGSTTSHHHHHHHHHHHHHHHHHHHTSHTCHHHHHHHHHHHCSSSEE---EEETT
T ss_pred CCCCCCCCe-eeecCCCEeecCchhhcCCCCHHHHHHHHHHHHHHHHhhcccCchHHHHHHHHHhhccCCCccccEEECC
Confidence 566666666 899999999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred EEEEEEEcCCCCeeEEEEEeCC--CCC-ceEEeCCCCcCCCC-CEEEEeEEECCCCcEEEEEEeccCCceEEEEEEECCC
Q 004766 92 KYFYFHNTGLQPQSVLYVQDSL--DAK-AKVLLDPNTLSDDG-TAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIED 167 (732)
Q Consensus 92 ~~~~~~~~~~~~~~~l~~r~~~--~~~-~~~l~D~~~l~~~~-~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~ 167 (732)
++||.++.++++++++|||... +++ +++|||+|++++++ .+.++.+++||||++|||+.+.+|+|+++|+|+|+++
T Consensus 80 ~~y~~~~~~~~~~~~~~r~~~~~~~~~~~evllD~n~l~~~~~~~~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~t 159 (414)
T PF02897_consen 80 YYYYSRNQGGKNYPVLYRRKTDEEDGPEEEVLLDPNELAKDGGYVSLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLET 159 (414)
T ss_dssp EEEEEEE-SS-SS-EEEEEETTS-TS-C-EEEEEGGGGSTTSS-EEEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTT
T ss_pred eEEEEEEcCCCceEEEEEEecccCCCCceEEEEcchHhhccCceEEeeeeeECCCCCEEEEEecCCCCceEEEEEEECCC
Confidence 9999999888888989999876 355 49999999999876 6777899999999999999999999999999999999
Q ss_pred CceecccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEE
Q 004766 168 QIVEADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFS 247 (732)
Q Consensus 168 g~~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~ 247 (732)
|+.+++.+.++.+.+++|++||+.|+|++.+..... .+..++.+||+|++|++..++++||++++++.+..+
T Consensus 160 g~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~--------~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~ 231 (414)
T PF02897_consen 160 GKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRT--------SDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVS 231 (414)
T ss_dssp TEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS---------CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEE
T ss_pred CcCcCCcccccccceEEEeCCCCEEEEEEeCccccc--------ccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEE
Confidence 998888777776556999999999999997763210 024568999999999999999999999887653678
Q ss_pred eEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCCCCcEEeeecccceEEEEEecCCeEEEEeCCCCCCc
Q 004766 248 GHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKY 327 (732)
Q Consensus 248 ~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~ 327 (732)
+.+|+||++|++.+..+.+ .+++|++++..+.. ....++.+..........+.+.|+.||+++|.+++++
T Consensus 232 ~~~s~d~~~l~i~~~~~~~-~s~v~~~d~~~~~~---------~~~~~~~l~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~ 301 (414)
T PF02897_consen 232 VSRSKDGRYLFISSSSGTS-ESEVYLLDLDDGGS---------PDAKPKLLSPREDGVEYYVDHHGDRLYILTNDDAPNG 301 (414)
T ss_dssp EEE-TTSSEEEEEEESSSS-EEEEEEEECCCTTT---------SS-SEEEEEESSSS-EEEEEEETTEEEEEE-TT-TT-
T ss_pred EEecCcccEEEEEEEcccc-CCeEEEEeccccCC---------CcCCcEEEeCCCCceEEEEEccCCEEEEeeCCCCCCc
Confidence 9999999999999888774 59999999987410 0223566666555555556667999999999999999
Q ss_pred eEEEEeCCCCC--Cce-EeccCCCCCceeEEEEecCCEEEEEEecCCeeEEEEEeCCCCceeeecccc-cceeeEeeccc
Q 004766 328 KIIRVDLKEPN--DWF-EVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIE-IGSVNAISARR 403 (732)
Q Consensus 328 ~l~~~d~~~~~--~~~-~l~~~~~~~~l~~~~~~~~~~l~~~~~~~g~~~l~~~d~~~g~~~~~l~~~-~g~v~~~~~s~ 403 (732)
+|+.++++... .|. .++++.++..+.++..++ ++|++..++++.++|+++++..+.....+.++ .+.+..++.++
T Consensus 302 ~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~-~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~ 380 (414)
T PF02897_consen 302 RLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFK-DYLVLSYRENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDF 380 (414)
T ss_dssp EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEET-TEEEEEEEETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-T
T ss_pred EEEEecccccccccceeEEcCCCCceeEEEEEEEC-CEEEEEEEECCccEEEEEECCCCcEEeeecCCcceEEeccCCCC
Confidence 99999998876 355 677777667899999988 89999999999999999999735544677776 67777888889
Q ss_pred CCcEEEEEEecCCCCceEEEEECCCCCCceEEEEe
Q 004766 404 EDSVVFISFTSFLIPGIVYQCNLKTETPEMKIFRE 438 (732)
Q Consensus 404 d~~~l~~~~ss~~~p~~~y~~d~~~~~~~~~~l~~ 438 (732)
+++.++|+++|+++|+++|.||+.+++ .+++++
T Consensus 381 ~~~~~~~~~ss~~~P~~~y~~d~~t~~--~~~~k~ 413 (414)
T PF02897_consen 381 DSDELRFSYSSFTTPPTVYRYDLATGE--LTLLKQ 413 (414)
T ss_dssp T-SEEEEEEEETTEEEEEEEEETTTTC--EEEEEE
T ss_pred CCCEEEEEEeCCCCCCEEEEEECCCCC--EEEEEe
Confidence 999999999999999999999999995 777765
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-46 Score=417.32 Aligned_cols=530 Identities=17% Similarity=0.181 Sum_probs=360.4
Q ss_pred EEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCC---
Q 004766 134 LIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGT--- 210 (732)
Q Consensus 134 ~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~--- 210 (732)
...+.|||||+.++|....+ ....++|+.+.. | .+..... ....+.|+|+|+.+.+........ ..+.
T Consensus 62 ~~~~~~spdg~~~~~~~~~~-~~~~~l~l~~~~-g-~~~~~~~--~v~~~~~~~~g~~~~~~~~~~~~~----~~~~~~~ 132 (620)
T COG1506 62 VSELRWSPDGSVLAFVSTDG-GRVAQLYLVDVG-G-LITKTAF--GVSDARWSPDGDRIAFLTAEGASK----RDGGDHL 132 (620)
T ss_pred ccccccCCCCCEEEEEeccC-CCcceEEEEecC-C-ceeeeec--ccccceeCCCCCeEEEEecccccc----cCCceee
Confidence 34778999999999998443 345799999987 5 2222222 237789999999999943221110 0000
Q ss_pred --------cccC-CcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCC--cceEEEEEEeCCCC
Q 004766 211 --------ETDS-NLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENC--DPVNKVYYCDLSAL 279 (732)
Q Consensus 211 --------~~~~-~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~--~~~~~l~~~d~~~~ 279 (732)
.... .....+++.+.++ . . ... ...........+.++++.++....... ......++....++
T Consensus 133 ~~~~~~~~~~~~g~~~~~l~~~d~~~-~-~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (620)
T COG1506 133 FVDRLPVWFDGRGGERSDLYVVDIES-K-L--IKL--GLGNLDVVSFATDGDGRLVASIRLDDDADPWVTNLYVLIEGNG 206 (620)
T ss_pred eecccceeecCCCCcccceEEEccCc-c-c--ccc--cCCCCceeeeeeCCCCceeEEeeeccccCCceEeeEEEecCCC
Confidence 0000 1223344444432 0 0 000 011122335566666777766654432 11233333332222
Q ss_pred CCCcccccccCCCCCcEEeeeccc-ceEEEEEecCCeEEEEeCCCC----CCceEEEEeCCCCCCceEeccCCC----CC
Q 004766 280 PEGLEGFKKRDGLLPFVKLIDGFD-AQYEVIANDDTVFTFLTNKDA----PKYKIIRVDLKEPNDWFEVIPEAE----RD 350 (732)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~s~dg~~l~~~s~~~~----~~~~l~~~d~~~~~~~~~l~~~~~----~~ 350 (732)
. ...++.+.. .....+.++|+.+++..+... ....++.++.+.+. ........+ ..
T Consensus 207 ~--------------~~~~~~~~~~~~~~~~~~~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~~~ 271 (620)
T COG1506 207 E--------------LESLTPGEGSISKLAFDADGKSIALLGTESDRGLAEGDFILLLDGELGE-VDGDLSSGDDTRGAW 271 (620)
T ss_pred c--------------eEEEcCCCceeeeeeeCCCCCeeEEeccCCccCccccceEEEEeccccc-cceeeccCCcccCcH
Confidence 1 223333221 122347788998888777532 13345555523222 111111110 01
Q ss_pred ceeEEEEecCCEEEEEEec-CCeeEEEEEeCCCCceeeecccccceeeEeecccCCcEEEEEEecCCCCceEEEEECCCC
Q 004766 351 VLESATAVNLNQMIVSYLS-DVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTE 429 (732)
Q Consensus 351 ~l~~~~~~~~~~l~~~~~~-~g~~~l~~~d~~~g~~~~~l~~~~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~ 429 (732)
.+... .+++.+++...+ .+...+...+...+.. ..+..+.+.+..++. +++.+++.++++..|+++|.++. ..
T Consensus 272 ~~~~~--~~~~~~~~~~~~~~g~~~l~~~~~~~~~~-~~~~~~~~~v~~f~~--~~~~~~~~~s~~~~p~~i~~~~~-~~ 345 (620)
T COG1506 272 AVEGG--LDGDGLLFIATDGGGSSPLFRVDDLGGGV-EGLSGDDGGVPGFDV--DGRKLALAYSSPTEPPEIYLYDR-GE 345 (620)
T ss_pred Hhccc--cCCCcEEEEEecCCCceEEEEEeccCCce-eeecCCCceEEEEee--CCCEEEEEecCCCCccceEEEcC-CC
Confidence 11111 233566666665 5555555555432322 334444566766664 88999999999999999999997 22
Q ss_pred CCceEEEEeecCCCCCC-CCceEEEEEEEccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHH
Q 004766 430 TPEMKIFRETIIPGFDR-SEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMR 508 (732)
Q Consensus 430 ~~~~~~l~~~~~~~~~~-~~~~~~~~~~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~ 508 (732)
...+.......+.. ....++.+++++.|| .+|+++++.|.++.+.+++|+||++||||.......|...++.++.
T Consensus 346 ---~~~~~~~~~~~~~~~~~~~~e~~~~~~~dG-~~i~~~l~~P~~~~~~k~yP~i~~~hGGP~~~~~~~~~~~~q~~~~ 421 (620)
T COG1506 346 ---EAKLTSSNNSGLKKVKLAEPEPVTYKSNDG-ETIHGWLYKPPGFDPRKKYPLIVYIHGGPSAQVGYSFNPEIQVLAS 421 (620)
T ss_pred ---ceEEeecccccccccccCCceEEEEEcCCC-CEEEEEEecCCCCCCCCCCCEEEEeCCCCccccccccchhhHHHhc
Confidence 22222212222222 234789999999999 9999999999998877789999999999988888888877666555
Q ss_pred hcCcEEEEEcccCCCCCchhHHhcccccCCccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeE
Q 004766 509 HLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGC 588 (732)
Q Consensus 509 ~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a 588 (732)
+||+|+.+|+||+++||++|.++..++++...++|+++++++|.+.+++|++||+|+|+|+||+|+++++++.| +|+|
T Consensus 422 -~G~~V~~~n~RGS~GyG~~F~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~SyGGymtl~~~~~~~-~f~a 499 (620)
T COG1506 422 -AGYAVLAPNYRGSTGYGREFADAIRGDWGGVDLEDLIAAVDALVKLPLVDPERIGITGGSYGGYMTLLAATKTP-RFKA 499 (620)
T ss_pred -CCeEEEEeCCCCCCccHHHHHHhhhhccCCccHHHHHHHHHHHHhCCCcChHHeEEeccChHHHHHHHHHhcCc-hhhe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999977 8999
Q ss_pred EEEcCCcccccccccCCCCCccc--cc-cCCCCCHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCc
Q 004766 589 ALAHVGVMDMLRYHKFTIGHAWV--SD-FGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVP 665 (732)
Q Consensus 589 ~v~~~p~~d~~~~~~~~~~~~~~--~~-~g~p~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~ 665 (732)
+++..+.+|++.+........+. .+ .+.+.. ..+.+.+.||+.++.+ +++|+||+||.+|.|||.
T Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~sp~~~~~~----------i~~P~LliHG~~D~~v~~ 567 (620)
T COG1506 500 AVAVAGGVDWLLYFGESTEGLRFDPEENGGGPPE--DREKYEDRSPIFYADN----------IKTPLLLIHGEEDDRVPI 567 (620)
T ss_pred EEeccCcchhhhhccccchhhcCCHHHhCCCccc--ChHHHHhcChhhhhcc----------cCCCEEEEeecCCccCCh
Confidence 99999988877665432221111 11 122221 3345789999999998 899999999999999999
Q ss_pred hHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeCCCCCCCCCchHHHHHHHHHHHHHHHHHhCC
Q 004766 666 LHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLGA 728 (732)
Q Consensus 666 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~ 728 (732)
.|+++|+++|+.. |+++++++||++||++..+.+. ...+..+++|+.++++.
T Consensus 568 ~q~~~~~~aL~~~----------g~~~~~~~~p~e~H~~~~~~~~-~~~~~~~~~~~~~~~~~ 619 (620)
T COG1506 568 EQAEQLVDALKRK----------GKPVELVVFPDEGHGFSRPENR-VKVLKEILDWFKRHLKQ 619 (620)
T ss_pred HHHHHHHHHHHHc----------CceEEEEEeCCCCcCCCCchhH-HHHHHHHHHHHHHHhcC
Confidence 9999999999998 9999999999999999987764 78999999999999874
|
|
| >KOG2281 consensus Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-34 Score=292.31 Aligned_cols=334 Identities=19% Similarity=0.198 Sum_probs=258.2
Q ss_pred CEEEEEEecCCe--eEEEEEeCC-CCceeeecccccceeeEeecccCCcEEEEEEecCCCCceEEEEECCCCCCceEEEE
Q 004766 361 NQMIVSYLSDVK--YVLQIRDLK-NGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTETPEMKIFR 437 (732)
Q Consensus 361 ~~l~~~~~~~g~--~~l~~~d~~-~g~~~~~l~~~~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~~~~~~~l~ 437 (732)
.-+||....++. .+||+.... .|+. .+++-+..+. ...++-+=+.++..++|-..|+.+..|.+.+++. ..+.+
T Consensus 516 ~LVYf~gt~d~PlE~hLyvvsye~~g~~-~rlt~~g~sh-~~~l~~~~d~fv~~~~sv~sP~cv~~y~ls~~~~-~~l~~ 592 (867)
T KOG2281|consen 516 KLVYFVGTKDTPLEHHLYVVSYENPGEI-ARLTEPGYSH-SCELDQQCDHFVSYYSSVGSPPCVSLYSLSWPEN-DPLPK 592 (867)
T ss_pred eEEEEEccCCCCceeeEEEEEEecCCce-eeccCCCccc-chhhhhhhhhHhhhhhcCCCCceEEEEeccCCcc-Ccccc
Confidence 346777777764 589998887 5665 6777442221 2223333344666778889999999998876641 11222
Q ss_pred eec-----C-CCCCCCCceE-EEEEEEccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCC-CCcCh---hHHHH
Q 004766 438 ETI-----I-PGFDRSEFHV-HQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVT-PSFSV---SRTIL 506 (732)
Q Consensus 438 ~~~-----~-~~~~~~~~~~-~~~~~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~-~~~~~---~~~~~ 506 (732)
+.. . ....+.+|.. +-+.+.++.| ..+.+.++.|.++++.+++|+++++|||++.+.. ..|.. .+...
T Consensus 593 q~~~~~~l~~~~~~~Pdy~p~eif~fqs~tg-~~lYgmiyKPhn~~pgkkYptvl~VYGGP~VQlVnnsfkgi~ylR~~~ 671 (867)
T KOG2281|consen 593 QVSFWAILVSGAPPPPDYVPPEIFSFQSKTG-LTLYGMIYKPHNFQPGKKYPTVLNVYGGPGVQLVNNSFKGIQYLRFCR 671 (867)
T ss_pred hhhHHHHHHhcCCCCCccCChhheeeecCCC-cEEEEEEEccccCCCCCCCceEEEEcCCCceEEeeccccceehhhhhh
Confidence 110 0 0112234533 6678888888 9999999999999999999999999999998653 34432 23556
Q ss_pred HHhcCcEEEEEcccCCCCCchhHHhcccccCCccHHHHHHHHHHHHHHc-CCCCCCcEEEEecChhHHHHHHHHhhCCCe
Q 004766 507 MRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISA-GYTQSRKLCIEGGSNGGLLVGACINQRPDL 585 (732)
Q Consensus 507 l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~-~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~ 585 (732)
|+.+||+|+++|-||+--.|..|....++..++..++|.+.++++|+++ |++|.+||+|.|||+||+|+++.+.++|+.
T Consensus 672 LaslGy~Vv~IDnRGS~hRGlkFE~~ik~kmGqVE~eDQVeglq~Laeq~gfidmdrV~vhGWSYGGYLSlm~L~~~P~I 751 (867)
T KOG2281|consen 672 LASLGYVVVFIDNRGSAHRGLKFESHIKKKMGQVEVEDQVEGLQMLAEQTGFIDMDRVGVHGWSYGGYLSLMGLAQYPNI 751 (867)
T ss_pred hhhcceEEEEEcCCCccccchhhHHHHhhccCeeeehhhHHHHHHHHHhcCcccchheeEeccccccHHHHHHhhcCcce
Confidence 7779999999999999999999999999999999999999999999998 599999999999999999999999999999
Q ss_pred eeEEEEcCCcccccccccCCCCCcccccc-CCCCCHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCe-EEEEeeCCCCCC
Q 004766 586 FGCALAHVGVMDMLRYHKFTIGHAWVSDF-GCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPS-TLLLTADHDDRV 663 (732)
Q Consensus 586 f~a~v~~~p~~d~~~~~~~~~~~~~~~~~-g~p~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~p-~Li~~g~~D~~v 663 (732)
|+++|+++|+.+|.-+.. .+++.| |-|+..+.. +.+-|-..++.++ ...|. +|++||.-|..|
T Consensus 752 frvAIAGapVT~W~~YDT-----gYTERYMg~P~~nE~g--Y~agSV~~~Vekl--------pdepnRLlLvHGliDENV 816 (867)
T KOG2281|consen 752 FRVAIAGAPVTDWRLYDT-----GYTERYMGYPDNNEHG--YGAGSVAGHVEKL--------PDEPNRLLLVHGLIDENV 816 (867)
T ss_pred eeEEeccCcceeeeeecc-----cchhhhcCCCccchhc--ccchhHHHHHhhC--------CCCCceEEEEecccccch
Confidence 999999999999976654 233444 667544432 3444556666664 13344 999999999999
Q ss_pred CchHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeCCCCCCCCCchHHHHHHHHHHHHHHHH
Q 004766 664 VPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAK 724 (732)
Q Consensus 664 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~ 724 (732)
++.|.-.++.+|-++ |+|.++++||++.|+..++... +...++++.||.+
T Consensus 817 HF~Hts~Lvs~lvka----------gKpyeL~IfP~ERHsiR~~es~-~~yE~rll~FlQ~ 866 (867)
T KOG2281|consen 817 HFAHTSRLVSALVKA----------GKPYELQIFPNERHSIRNPESG-IYYEARLLHFLQE 866 (867)
T ss_pred hhhhHHHHHHHHHhC----------CCceEEEEccccccccCCCccc-hhHHHHHHHHHhh
Confidence 999999999999998 9999999999999999887664 6777889999865
|
|
| >PF00326 Peptidase_S9: Prolyl oligopeptidase family This family belongs to family S9 of the peptidase classification | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-34 Score=281.30 Aligned_cols=209 Identities=31% Similarity=0.457 Sum_probs=173.8
Q ss_pred CCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHH
Q 004766 497 PSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVG 576 (732)
Q Consensus 497 ~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~ 576 (732)
|+|+. ..++|+++||+|+.+|+||+++||.+|+..+....+...++|+++++++|++++.+|++||+|+|+|+||++++
T Consensus 1 ~~f~~-~~~~la~~Gy~v~~~~~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~iD~~ri~i~G~S~GG~~a~ 79 (213)
T PF00326_consen 1 PSFNW-NAQLLASQGYAVLVPNYRGSGGYGKDFHEAGRGDWGQADVDDVVAAIEYLIKQYYIDPDRIGIMGHSYGGYLAL 79 (213)
T ss_dssp ---SH-HHHHHHTTT-EEEEEE-TTSSSSHHHHHHTTTTGTTHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETHHHHHHH
T ss_pred CeeeH-HHHHHHhCCEEEEEEcCCCCCccchhHHHhhhccccccchhhHHHHHHHHhccccccceeEEEEcccccccccc
Confidence 46774 45778779999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCCeeeEEEEcCCcccccccccCCC--CCccccccCCC-CCHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEE
Q 004766 577 ACINQRPDLFGCALAHVGVMDMLRYHKFTI--GHAWVSDFGCS-EEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTL 653 (732)
Q Consensus 577 ~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~--~~~~~~~~g~p-~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~p~L 653 (732)
.+++++|++|+|+|+.+|++|+..+...+. ...+..+++++ ..++.+..+ ||+..+.+. .+++|+|
T Consensus 80 ~~~~~~~~~f~a~v~~~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---s~~~~~~~~--------~~~~P~l 148 (213)
T PF00326_consen 80 LAATQHPDRFKAAVAGAGVSDLFSYYGTTDIYTKAEYLEYGDPWDNPEFYREL---SPISPADNV--------QIKPPVL 148 (213)
T ss_dssp HHHHHTCCGSSEEEEESE-SSTTCSBHHTCCHHHGHHHHHSSTTTSHHHHHHH---HHGGGGGGC--------GGGSEEE
T ss_pred hhhcccceeeeeeeccceecchhcccccccccccccccccCccchhhhhhhhh---ccccccccc--------cCCCCEE
Confidence 999999999999999999999988765332 12234567777 455555444 455444431 1478999
Q ss_pred EEeeCCCCCCCchHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeCCCCCCCCCchHHHHHHHHHHHHHHHHHhCC
Q 004766 654 LLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLGA 728 (732)
Q Consensus 654 i~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~ 728 (732)
|+||++|.+||+.++.+++++|+++ |++++++++|++||++..+..+ .+...++++||.++|+.
T Consensus 149 i~hG~~D~~Vp~~~s~~~~~~L~~~----------g~~~~~~~~p~~gH~~~~~~~~-~~~~~~~~~f~~~~l~~ 212 (213)
T PF00326_consen 149 IIHGENDPRVPPSQSLRLYNALRKA----------GKPVELLIFPGEGHGFGNPENR-RDWYERILDFFDKYLKK 212 (213)
T ss_dssp EEEETTBSSSTTHHHHHHHHHHHHT----------TSSEEEEEETT-SSSTTSHHHH-HHHHHHHHHHHHHHTT-
T ss_pred EEccCCCCccCHHHHHHHHHHHHhc----------CCCEEEEEcCcCCCCCCCchhH-HHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999998 9999999999999999988876 58999999999999985
|
; InterPro: IPR001375 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain covers the active site serine of the serine peptidases belonging to MEROPS peptidase family S9 (prolyl oligopeptidase family, clan SC). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Examples of protein families containing this domain are: Prolyl endopeptidase (3.4.21.26 from EC) (PE) (also called post-proline cleaving enzyme). PE is an enzyme that cleaves peptide bonds on the C-terminal side of prolyl residues. The sequence of PE has been obtained from a mammalian species (pig) and from bacteria (Flavobacterium meningosepticum and Aeromonas hydrophila); there is a high degree of sequence conservation between these sequences. Escherichia coli protease II (3.4.21.83 from EC) (oligopeptidase B) (gene prtB) which cleaves peptide bonds on the C-terminal side of lysyl and argininyl residues. Dipeptidyl peptidase IV (3.4.14.5 from EC) (DPP IV). DPP IV is an enzyme that removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline. Saccharomyces cerevisiae (Baker's yeast) vacuolar dipeptidyl aminopeptidases A and B (DPAP A and DPAP B), encoded by the STE13 and DAP2 genes respectively. DPAP A is responsible for the proteolytic maturation of the alpha-factor precursor. Acylamino-acid-releasing enzyme (3.4.19.1 from EC) (acyl-peptide hydrolase). This enzyme catalyses the hydrolysis of the amino-terminal peptide bond of an N-acetylated protein to generate a N-acetylated amino acid and a protein with a free amino-terminus. These proteins belong to MEROPS peptidase families S9A, S9B and S9C.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 2AJ8_D 1ORV_D 2AJB_C 2BUC_D 1ORW_D 2AJC_D 2AJD_C 2BUA_A 2HU8_B 3O4J_B .... |
| >KOG2100 consensus Dipeptidyl aminopeptidase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-30 Score=291.04 Aligned_cols=386 Identities=17% Similarity=0.215 Sum_probs=268.2
Q ss_pred EEecC-CeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEe-cCCEEEEEEecC--CeeEEEEEeCCCCc
Q 004766 309 IANDD-TVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAV-NLNQMIVSYLSD--VKYVLQIRDLKNGS 384 (732)
Q Consensus 309 ~s~dg-~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~-~~~~l~~~~~~~--g~~~l~~~d~~~g~ 384 (732)
++.|+ ..+++....+++...+.......+.....++... ........+. ..+.+++..... +..+|+.+++.++.
T Consensus 347 ~~~d~~~~~~~~~~~~~~~~hi~~~~~~~~~~~~~lt~g~-w~v~~i~~~~~~~~~i~f~~~~~~~~~~~ly~i~~~~~~ 425 (755)
T KOG2100|consen 347 FSSDGSSYLKVDSVSDGGYNHIAYLKLSNGSEPRMLTSGN-WEVTSILGYDKDSNRIYFDAYEEDPSERHLYSISLGSGT 425 (755)
T ss_pred EeecCCceeEEEeeccCCEEEEEEEEcCCCCccccccccc-eEEEEeccccCCCceEEEEecCCCCCceEEEEEEccccc
Confidence 45555 3444444444433455555554442223333332 1111122222 236788877774 55688888887555
Q ss_pred eeeecccc----cceeeEeecccCCcEEEEEEecCCCCceEEEEECCCCCC--ceEEEEe-ecCC----CCCCCCceEEE
Q 004766 385 LLHQLPIE----IGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTETP--EMKIFRE-TIIP----GFDRSEFHVHQ 453 (732)
Q Consensus 385 ~~~~l~~~----~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~~~--~~~~l~~-~~~~----~~~~~~~~~~~ 453 (732)
. ..++-. .+...+++++.....+++..+.+..|.. .+...+.+. ....|.. ..+. .+.......+.
T Consensus 426 ~-~~lt~~~~~~~~~~~~~~~~~~~~~~v~~~~gP~~p~~--~~~~~~~~~~~~~~~Le~n~~~~~~~~~~~~p~~~~~~ 502 (755)
T KOG2100|consen 426 V-ESLTCSLITGPCTYLSVSFSKSAKYYVLSCSGPKVPDG--QLTRHSSKNSKTIVVLETNEELKKTIENVALPIVEFGK 502 (755)
T ss_pred c-ccccccCCCCcceEEEEecCCcccEEEEEccCCCCCcc--eeeccccccceEEEEeccChhhHHHhhcccCCcceeEE
Confidence 3 345432 2344455666667777777777777754 222111110 1112211 1111 11111223333
Q ss_pred EEEEccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCC-CCcChhH-HHHHHhcCcEEEEEcccCCCCCchhHHh
Q 004766 454 VFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVT-PSFSVSR-TILMRHLGAVFCIANIRGGGEYGEEWHK 531 (732)
Q Consensus 454 ~~~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~-~~~~~~~-~~~l~~~G~~v~~~~~rG~g~~g~~~~~ 531 (732)
+.+ || ....+.++.|+++.+.+++|+||..|||+++... ..|...+ ..++..+|++|+.+|+||+|++|..+..
T Consensus 503 i~~---~~-~~~~~~~~lP~~~~~~~kyPllv~~yGGP~sq~v~~~~~~~~~~~~~s~~g~~v~~vd~RGs~~~G~~~~~ 578 (755)
T KOG2100|consen 503 IEI---DG-ITANAILILPPNFDPSKKYPLLVVVYGGPGSQSVTSKFSVDWNEVVVSSRGFAVLQVDGRGSGGYGWDFRS 578 (755)
T ss_pred EEe---cc-EEEEEEEecCCCCCCCCCCCEEEEecCCCCcceeeeeEEecHHHHhhccCCeEEEEEcCCCcCCcchhHHH
Confidence 433 88 9999999999999888999999999999985332 3344333 3446779999999999999999999999
Q ss_pred cccccCCccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCC-CeeeEEEEcCCcccccccccCCCCCcc
Q 004766 532 GGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRP-DLFGCALAHVGVMDMLRYHKFTIGHAW 610 (732)
Q Consensus 532 ~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p-~~f~a~v~~~p~~d~~~~~~~~~~~~~ 610 (732)
+..+..+....+|.+.+++++++++++|++||+|+|+|+||+|++.++...| +.|+|+++.+|++|+. ++..+ +
T Consensus 579 ~~~~~lG~~ev~D~~~~~~~~~~~~~iD~~ri~i~GwSyGGy~t~~~l~~~~~~~fkcgvavaPVtd~~-~yds~----~ 653 (755)
T KOG2100|consen 579 ALPRNLGDVEVKDQIEAVKKVLKLPFIDRSRVAIWGWSYGGYLTLKLLESDPGDVFKCGVAVAPVTDWL-YYDST----Y 653 (755)
T ss_pred HhhhhcCCcchHHHHHHHHHHHhcccccHHHeEEeccChHHHHHHHHhhhCcCceEEEEEEecceeeee-eeccc----c
Confidence 9999999999999999999999999999999999999999999999999987 8999999999999998 54422 2
Q ss_pred cccc-CCCCCHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhcCCCCCCCCC
Q 004766 611 VSDF-GCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQT 689 (732)
Q Consensus 611 ~~~~-g~p~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~ 689 (732)
.++| |.|.+.... +.+.+|..++... ..|-.|++||..|++|++.|+++++++|+.+ |
T Consensus 654 terymg~p~~~~~~--y~e~~~~~~~~~~---------~~~~~LliHGt~DdnVh~q~s~~~~~aL~~~----------g 712 (755)
T KOG2100|consen 654 TERYMGLPSENDKG--YEESSVSSPANNI---------KTPKLLLIHGTEDDNVHFQQSAILIKALQNA----------G 712 (755)
T ss_pred cHhhcCCCccccch--hhhccccchhhhh---------ccCCEEEEEcCCcCCcCHHHHHHHHHHHHHC----------C
Confidence 3455 666333221 4566676666652 3344699999999999999999999999998 9
Q ss_pred CCEEEEEeCCCCCCCCCchHHHHHHHHHHHHHHHHHhCCC
Q 004766 690 NPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLGAS 729 (732)
Q Consensus 690 ~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~~ 729 (732)
+++.+.+||++.|++...... ...+..+..||..+++..
T Consensus 713 v~~~~~vypde~H~is~~~~~-~~~~~~~~~~~~~~~~~~ 751 (755)
T KOG2100|consen 713 VPFRLLVYPDENHGISYVEVI-SHLYEKLDRFLRDCFGSP 751 (755)
T ss_pred CceEEEEeCCCCcccccccch-HHHHHHHHHHHHHHcCcc
Confidence 999999999999999876653 577788899999877654
|
|
| >PRK13604 luxD acyl transferase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.5e-20 Score=187.56 Aligned_cols=223 Identities=13% Similarity=0.082 Sum_probs=154.7
Q ss_pred eEEEEEEEccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCC-CCCchh
Q 004766 450 HVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGG-GEYGEE 528 (732)
Q Consensus 450 ~~~~~~~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~-g~~g~~ 528 (732)
......+.+.|| .++.+|+..|++. ...+.|+||++||-.+.. .+...++.+|.++||.|+.+|.||+ |+.+.+
T Consensus 8 ~~~~~~~~~~dG-~~L~Gwl~~P~~~-~~~~~~~vIi~HGf~~~~---~~~~~~A~~La~~G~~vLrfD~rg~~GeS~G~ 82 (307)
T PRK13604 8 KTIDHVICLENG-QSIRVWETLPKEN-SPKKNNTILIASGFARRM---DHFAGLAEYLSSNGFHVIRYDSLHHVGLSSGT 82 (307)
T ss_pred cchhheEEcCCC-CEEEEEEEcCccc-CCCCCCEEEEeCCCCCCh---HHHHHHHHHHHHCCCEEEEecCCCCCCCCCCc
Confidence 333445677899 9999999999853 246789999999965532 2234467778889999999999986 776655
Q ss_pred HHhcccccCCccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCcccccccccCCCCC
Q 004766 529 WHKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGH 608 (732)
Q Consensus 529 ~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~ 608 (732)
+....... ...|+.++++||.+++ .++|++.|+||||.++..++.. + ..+++|+.+|+.++..+.......
T Consensus 83 ~~~~t~s~----g~~Dl~aaid~lk~~~---~~~I~LiG~SmGgava~~~A~~-~-~v~~lI~~sp~~~l~d~l~~~~~~ 153 (307)
T PRK13604 83 IDEFTMSI----GKNSLLTVVDWLNTRG---INNLGLIAASLSARIAYEVINE-I-DLSFLITAVGVVNLRDTLERALGY 153 (307)
T ss_pred cccCcccc----cHHHHHHHHHHHHhcC---CCceEEEEECHHHHHHHHHhcC-C-CCCEEEEcCCcccHHHHHHHhhhc
Confidence 54332211 2589999999998863 4689999999999998776664 3 389999999999965333210000
Q ss_pred -----ccc--cc---c-CCCC-CHHHHHHHHh------cCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHH
Q 004766 609 -----AWV--SD---F-GCSE-EEEEFYWLIK------YSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLK 670 (732)
Q Consensus 609 -----~~~--~~---~-g~p~-~~~~~~~~~~------~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~ 670 (732)
.+. .+ | |.+- ....+..... .+|...+++ .+.|+|++||.+|+.||+.++.+
T Consensus 154 ~~~~~p~~~lp~~~d~~g~~l~~~~f~~~~~~~~~~~~~s~i~~~~~----------l~~PvLiIHG~~D~lVp~~~s~~ 223 (307)
T PRK13604 154 DYLSLPIDELPEDLDFEGHNLGSEVFVTDCFKHGWDTLDSTINKMKG----------LDIPFIAFTANNDSWVKQSEVID 223 (307)
T ss_pred ccccCcccccccccccccccccHHHHHHHHHhcCccccccHHHHHhh----------cCCCEEEEEcCCCCccCHHHHHH
Confidence 000 00 1 1110 0111111112 234455554 56899999999999999999999
Q ss_pred HHHHHHHhhcCCCCCCCCCCCEEEEEeCCCCCCCCCch
Q 004766 671 LLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPT 708 (732)
Q Consensus 671 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~ 708 (732)
++++++ ..+..++++++++|.+....
T Consensus 224 l~e~~~------------s~~kkl~~i~Ga~H~l~~~~ 249 (307)
T PRK13604 224 LLDSIR------------SEQCKLYSLIGSSHDLGENL 249 (307)
T ss_pred HHHHhc------------cCCcEEEEeCCCccccCcch
Confidence 999875 34679999999999997654
|
|
| >PLN02442 S-formylglutathione hydrolase | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.4e-20 Score=192.48 Aligned_cols=246 Identities=11% Similarity=0.051 Sum_probs=161.7
Q ss_pred eEEEEEEEc-cCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCC-----
Q 004766 450 HVHQVFVPS-KDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGG----- 523 (732)
Q Consensus 450 ~~~~~~~~s-~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g----- 523 (732)
.++++.+.| .-| .++++.++.|+. ...+++|+|+++||..+......+......+++..|++|++||..+.|
T Consensus 17 ~~~~~~~~s~~l~-~~~~~~vy~P~~-~~~~~~Pvv~~lHG~~~~~~~~~~~~~~~~~~~~~g~~Vv~pd~~~~g~~~~~ 94 (283)
T PLN02442 17 FNRRYKHFSSTLG-CSMTFSVYFPPA-SDSGKVPVLYWLSGLTCTDENFIQKSGAQRAAAARGIALVAPDTSPRGLNVEG 94 (283)
T ss_pred EEEEEEEeccccC-CceEEEEEcCCc-ccCCCCCEEEEecCCCcChHHHHHhhhHHHHHhhcCeEEEecCCCCCCCCCCC
Confidence 455555655 356 799999999984 345689999999998776543333334456777789999999986544
Q ss_pred -------CCchhHHhccc-ccCCc-c----HHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEE
Q 004766 524 -------EYGEEWHKGGA-LAKKQ-N----CFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCAL 590 (732)
Q Consensus 524 -------~~g~~~~~~~~-~~~~~-~----~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v 590 (732)
++|..++.... ..++. . ..+++...++... ..+|+++++|+|+|+||++++.++.++|++|++++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~--~~~~~~~~~i~G~S~GG~~a~~~a~~~p~~~~~~~ 172 (283)
T PLN02442 95 EADSWDFGVGAGFYLNATQEKWKNWRMYDYVVKELPKLLSDNF--DQLDTSRASIFGHSMGGHGALTIYLKNPDKYKSVS 172 (283)
T ss_pred CccccccCCCcceeeccccCCCcccchhhhHHHHHHHHHHHHH--HhcCCCceEEEEEChhHHHHHHHHHhCchhEEEEE
Confidence 11222221111 01100 1 1233333333322 23688999999999999999999999999999999
Q ss_pred EcCCcccccccccCCCCCccccccCCCCCHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCch-HHH
Q 004766 591 AHVGVMDMLRYHKFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPL-HSL 669 (732)
Q Consensus 591 ~~~p~~d~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~-~~~ 669 (732)
+.+|+.|+.... ... ......+|.+. +.++.+...+|+.++.. ..+|+|++||++|..|+.. ++.
T Consensus 173 ~~~~~~~~~~~~-~~~-~~~~~~~g~~~--~~~~~~d~~~~~~~~~~----------~~~pvli~~G~~D~~v~~~~~s~ 238 (283)
T PLN02442 173 AFAPIANPINCP-WGQ-KAFTNYLGSDK--ADWEEYDATELVSKFND----------VSATILIDQGEADKFLKEQLLPE 238 (283)
T ss_pred EECCccCcccCc-hhh-HHHHHHcCCCh--hhHHHcChhhhhhhccc----------cCCCEEEEECCCCccccccccHH
Confidence 999998854211 000 01112345432 22322333344444433 6789999999999999974 689
Q ss_pred HHHHHHHHhhcCCCCCCCCCCCEEEEEeCCCCCCCCCchHHHHHHHHHHHHHHHHHhC
Q 004766 670 KLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLG 727 (732)
Q Consensus 670 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 727 (732)
.++++|+++ |.++.++++++++|.+. .......+.+.|..+++.
T Consensus 239 ~~~~~l~~~----------g~~~~~~~~pg~~H~~~----~~~~~i~~~~~~~~~~~~ 282 (283)
T PLN02442 239 NFEEACKEA----------GAPVTLRLQPGYDHSYF----FIATFIDDHINHHAQALK 282 (283)
T ss_pred HHHHHHHHc----------CCCeEEEEeCCCCccHH----HHHHHHHHHHHHHHHHhc
Confidence 999999988 88999999999999865 233444556667666653
|
|
| >TIGR02821 fghA_ester_D S-formylglutathione hydrolase | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.2e-20 Score=188.63 Aligned_cols=246 Identities=15% Similarity=0.101 Sum_probs=165.5
Q ss_pred eEEEEEEEcc-CCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcc--cCCCCCc
Q 004766 450 HVHQVFVPSK-DGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANI--RGGGEYG 526 (732)
Q Consensus 450 ~~~~~~~~s~-dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~--rG~g~~g 526 (732)
..+...+.|. -| .++++.++.|++.. .++.|+|+++||..+......+......++++.|++|++||. ||.+..|
T Consensus 12 ~~~~~~~~s~~~~-~~~~~~v~~P~~~~-~~~~P~vvllHG~~~~~~~~~~~~~~~~la~~~g~~Vv~Pd~~~~g~~~~~ 89 (275)
T TIGR02821 12 TQGFYRHKSETCG-VPMTFGVFLPPQAA-AGPVPVLWYLSGLTCTHENFMIKAGAQRFAAEHGLALVAPDTSPRGTGIAG 89 (275)
T ss_pred EEEEEEEeccccC-CceEEEEEcCCCcc-CCCCCEEEEccCCCCCccHHHhhhHHHHHHhhcCcEEEEeCCCCCcCCCCC
Confidence 4455555554 55 78889999998743 356899999999877654444333445666667999999997 6665333
Q ss_pred ----------hhHHhcccc-cC--CccHHHHHHHHHHHHHHc-CCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEc
Q 004766 527 ----------EEWHKGGAL-AK--KQNCFDDFISASEYLISA-GYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAH 592 (732)
Q Consensus 527 ----------~~~~~~~~~-~~--~~~~~~D~~~~~~~l~~~-~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~ 592 (732)
..|+..... .. .....+.+...+..+++. .-+|++|++|+|+||||++++.++.++|++|+++++.
T Consensus 90 ~~~~w~~g~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~G~S~GG~~a~~~a~~~p~~~~~~~~~ 169 (275)
T TIGR02821 90 EDDAWDFGKGAGFYVDATEEPWSQHYRMYSYIVQELPALVAAQFPLDGERQGITGHSMGGHGALVIALKNPDRFKSVSAF 169 (275)
T ss_pred CcccccccCCccccccCCcCcccccchHHHHHHHHHHHHHHhhCCCCCCceEEEEEChhHHHHHHHHHhCcccceEEEEE
Confidence 122211100 00 112233344455555544 3378899999999999999999999999999999999
Q ss_pred CCcccccccccCCCCCccccccCCCCCHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCc-hHHHHH
Q 004766 593 VGVMDMLRYHKFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVP-LHSLKL 671 (732)
Q Consensus 593 ~p~~d~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~-~~~~~~ 671 (732)
+|+.+..... .. ...+...+|.+. +. +..++|...+.+. ...||+||.||.+|++|+. .++..+
T Consensus 170 ~~~~~~~~~~-~~-~~~~~~~l~~~~--~~---~~~~~~~~~~~~~--------~~~~plli~~G~~D~~v~~~~~~~~~ 234 (275)
T TIGR02821 170 APIVAPSRCP-WG-QKAFSAYLGADE--AA---WRSYDASLLVADG--------GRHSTILIDQGTADQFLDEQLRPDAF 234 (275)
T ss_pred CCccCcccCc-ch-HHHHHHHhcccc--cc---hhhcchHHHHhhc--------ccCCCeeEeecCCCcccCccccHHHH
Confidence 9998753210 00 000111233321 11 2244555444432 2578999999999999999 689999
Q ss_pred HHHHHHhhcCCCCCCCCCCCEEEEEeCCCCCCCCCchHHHHHHHHHHHHHHHHHh
Q 004766 672 LATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKML 726 (732)
Q Consensus 672 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l 726 (732)
.++|+++ |.++++.++++++|++.. ........+.|..+++
T Consensus 235 ~~~l~~~----------g~~v~~~~~~g~~H~f~~----~~~~~~~~~~~~~~~~ 275 (275)
T TIGR02821 235 EQACRAA----------GQALTLRRQAGYDHSYYF----IASFIADHLRHHAERL 275 (275)
T ss_pred HHHHHHc----------CCCeEEEEeCCCCccchh----HHHhHHHHHHHHHhhC
Confidence 9999988 999999999999999864 2345556677776653
|
This model describes a protein family from bacteria, yeast, and human, with a conserved critical role in formaldehyde detoxification as S-formylglutathione hydrolase (EC 3.1.2.12). Members in eukaryotes such as the human protein are better known as esterase D (EC 3.1.1.1), an enzyme with broad specificity, although S-formylglutathione hydrolase has now been demonstrated as well. |
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.5e-20 Score=199.09 Aligned_cols=295 Identities=16% Similarity=0.125 Sum_probs=205.2
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHhhcCCCCCCCcEEeCCEEEEEEEcCCCCeeEEEEEeCCCCCceEEeCCCCcCCCCCE
Q 004766 53 QVELTDSVLKNCDVRDKLREKITKLFDSPRYDAPFKRGNKYFYFHNTGLQPQSVLYVQDSLDAKAKVLLDPNTLSDDGTA 132 (732)
Q Consensus 53 qn~~t~~~l~~~~~~~~l~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~l~~r~~~~~~~~~l~D~~~l~~~~~~ 132 (732)
|+.++++++...+.+..+..++.+.+.....+.|...+++++|....+.+.+..||+++..+...+.|++.+..
T Consensus 118 ~~~~~~~~~~~~~~~~~~a~~~~~~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~------ 191 (417)
T TIGR02800 118 LQLLGKQYTVTASQLRRVAHRIADAIYEKLTGERGAFSTRIAYVSKSGKSRRYELQVADYDGANPQTITRSREP------ 191 (417)
T ss_pred EEeeeeeEEcCHHHHHHHHHHHHHHHHHHhcCCCCCcCCEEEEEEEeCCCCcceEEEEcCCCCCCEEeecCCCc------
Confidence 55666777766677788888888877766677777788898998876655677899988655667788876542
Q ss_pred EEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceeccc-ccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCc
Q 004766 133 ALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADA-LSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTE 211 (732)
Q Consensus 133 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~-~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~ 211 (732)
+..+.|||||++|||+...++. .+|+++|+++|+..... ..+. ...++|+|||+.|+|+....
T Consensus 192 -~~~p~~Spdg~~la~~~~~~~~--~~i~v~d~~~g~~~~~~~~~~~-~~~~~~spDg~~l~~~~~~~------------ 255 (417)
T TIGR02800 192 -ILSPAWSPDGQKLAYVSFESGK--PEIYVQDLATGQREKVASFPGM-NGAPAFSPDGSKLAVSLSKD------------ 255 (417)
T ss_pred -eecccCCCCCCEEEEEEcCCCC--cEEEEEECCCCCEEEeecCCCC-ccceEECCCCCEEEEEECCC------------
Confidence 3478899999999999866554 68999999998643322 2222 35689999999999985322
Q ss_pred ccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCC
Q 004766 212 TDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDG 291 (732)
Q Consensus 212 ~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 291 (732)
...+||+++++++....+ .. .......+.|+|||++|++.+.+.. ...||++++.++.
T Consensus 256 ----~~~~i~~~d~~~~~~~~l--~~---~~~~~~~~~~s~dg~~l~~~s~~~g--~~~iy~~d~~~~~----------- 313 (417)
T TIGR02800 256 ----GNPDIYVMDLDGKQLTRL--TN---GPGIDTEPSWSPDGKSIAFTSDRGG--SPQIYMMDADGGE----------- 313 (417)
T ss_pred ----CCccEEEEECCCCCEEEC--CC---CCCCCCCEEECCCCCEEEEEECCCC--CceEEEEECCCCC-----------
Confidence 235799999987654322 21 1122346789999999999876544 4579999987642
Q ss_pred CCCcEEeeecccc-eEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecC-CEEEEEEec
Q 004766 292 LLPFVKLIDGFDA-QYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNL-NQMIVSYLS 369 (732)
Q Consensus 292 ~~~~~~l~~~~~~-~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~-~~l~~~~~~ 369 (732)
.+.+...... ....|+|||+.+++..... +.++|+.+|+.++. .+ ++.+.. ......++++ +.|++....
T Consensus 314 ---~~~l~~~~~~~~~~~~spdg~~i~~~~~~~-~~~~i~~~d~~~~~-~~-~l~~~~--~~~~p~~spdg~~l~~~~~~ 385 (417)
T TIGR02800 314 ---VRRLTFRGGYNASPSWSPDGDLIAFVHREG-GGFNIAVMDLDGGG-ER-VLTDTG--LDESPSFAPNGRMILYATTR 385 (417)
T ss_pred ---EEEeecCCCCccCeEECCCCCEEEEEEccC-CceEEEEEeCCCCC-eE-EccCCC--CCCCceECCCCCEEEEEEeC
Confidence 3344432221 2236899999888876643 57789999998865 33 444331 2344567764 568888888
Q ss_pred CCeeEEEEEeCCCCceeeecccccceeeEee
Q 004766 370 DVKYVLQIRDLKNGSLLHQLPIEIGSVNAIS 400 (732)
Q Consensus 370 ~g~~~l~~~d~~~g~~~~~l~~~~g~v~~~~ 400 (732)
++...+++++.+ |+..+.++.+.+.+..++
T Consensus 386 ~~~~~l~~~~~~-g~~~~~~~~~~g~~~~~~ 415 (417)
T TIGR02800 386 GGRGVLGLVSTD-GRFRARLPLGNGDVREPA 415 (417)
T ss_pred CCcEEEEEEECC-CceeeECCCCCCCcCCCC
Confidence 888889998876 665577776666554443
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PRK10566 esterase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.3e-20 Score=187.62 Aligned_cols=229 Identities=14% Similarity=0.129 Sum_probs=150.3
Q ss_pred eEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCC-chhHHhccc--ccCCcc
Q 004766 464 KIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEY-GEEWHKGGA--LAKKQN 540 (732)
Q Consensus 464 ~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~-g~~~~~~~~--~~~~~~ 540 (732)
.++...+.|.+. .+++.|+||++||..+... .|. .+...|+++||.|+++|+||.|.. +..-..... ......
T Consensus 11 ~~~~~~~~p~~~-~~~~~p~vv~~HG~~~~~~--~~~-~~~~~l~~~G~~v~~~d~~g~G~~~~~~~~~~~~~~~~~~~~ 86 (249)
T PRK10566 11 GIEVLHAFPAGQ-RDTPLPTVFFYHGFTSSKL--VYS-YFAVALAQAGFRVIMPDAPMHGARFSGDEARRLNHFWQILLQ 86 (249)
T ss_pred CcceEEEcCCCC-CCCCCCEEEEeCCCCcccc--hHH-HHHHHHHhCCCEEEEecCCcccccCCCccccchhhHHHHHHH
Confidence 455666777642 2356899999999766532 333 345666669999999999997642 110000000 000113
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEE-EcCCcccccccccCCCCCccccccCCCCC
Q 004766 541 CFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCAL-AHVGVMDMLRYHKFTIGHAWVSDFGCSEE 619 (732)
Q Consensus 541 ~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v-~~~p~~d~~~~~~~~~~~~~~~~~g~p~~ 619 (732)
..+|+.++++++.+++++|++||+++|+|+||++++.++.++|+...+++ +..+.........+. .... ..+..
T Consensus 87 ~~~~~~~~~~~l~~~~~~~~~~i~v~G~S~Gg~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~---~~~~~ 161 (249)
T PRK10566 87 NMQEFPTLRAAIREEGWLLDDRLAVGGASMGGMTALGIMARHPWVKCVASLMGSGYFTSLARTLFP--PLIP---ETAAQ 161 (249)
T ss_pred HHHHHHHHHHHHHhcCCcCccceeEEeecccHHHHHHHHHhCCCeeEEEEeeCcHHHHHHHHHhcc--cccc---ccccc
Confidence 46888889999999988999999999999999999999998887654443 333332211100000 0000 01111
Q ss_pred ----HHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhcCCCCCCCCCC--CEE
Q 004766 620 ----EEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTN--PII 693 (732)
Q Consensus 620 ----~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~ 693 (732)
.+.+..+..+++...+.+. ...|+|++||.+|..||+.++.++.++|+.+ |. .+.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~i---------~~~P~Lii~G~~D~~v~~~~~~~l~~~l~~~----------g~~~~~~ 222 (249)
T PRK10566 162 QAEFNNIVAPLAEWEVTHQLEQL---------ADRPLLLWHGLADDVVPAAESLRLQQALRER----------GLDKNLT 222 (249)
T ss_pred HHHHHHHHHHHhhcChhhhhhhc---------CCCCEEEEEcCCCCcCCHHHHHHHHHHHHhc----------CCCcceE
Confidence 1112223445554444441 3579999999999999999999999999876 65 478
Q ss_pred EEEeCCCCCCCCCchHHHHHHHHHHHHHHHHHh
Q 004766 694 GRIERKAGHGVGLPTQKMIDEAADRYGFMAKML 726 (732)
Q Consensus 694 ~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l 726 (732)
++.++++||.+.. +....+.+||.++|
T Consensus 223 ~~~~~~~~H~~~~------~~~~~~~~fl~~~~ 249 (249)
T PRK10566 223 CLWEPGVRHRITP------EALDAGVAFFRQHL 249 (249)
T ss_pred EEecCCCCCccCH------HHHHHHHHHHHhhC
Confidence 9999999999752 35678899999875
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.7e-18 Score=186.98 Aligned_cols=285 Identities=13% Similarity=0.036 Sum_probs=180.8
Q ss_pred HHHHhhcCCCCCCCcEEeCCEEEEEEEcCCC----CeeEEEEEeCCCCCceEEeCCCCcCCCCCEEEEeEEECCCCcE--
Q 004766 72 EKITKLFDSPRYDAPFKRGNKYFYFHNTGLQ----PQSVLYVQDSLDAKAKVLLDPNTLSDDGTAALIKVSVSEDAKY-- 145 (732)
Q Consensus 72 ~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~----~~~~l~~r~~~~~~~~~l~D~~~l~~~~~~~~~~~~~SPDG~~-- 145 (732)
.++.+.+...-.+.|..-+.++.|..+.... ....||+.+..+++++.|+..... ...++|||||+.
T Consensus 128 h~~~D~~~~~~tg~~g~~~~~iayv~~~~~~~~~~~~~~l~~~d~dG~~~~~lt~~~~~-------~~sP~wSPDG~~~~ 200 (428)
T PRK01029 128 HEAADTIHYALTGVPGISSGKIIFSLSTTNSDTELKQGELWSVDYDGQNLRPLTQEHSL-------SITPTWMHIGSGFP 200 (428)
T ss_pred HHHHHHHHHHHcCCCccccCEEEEEEeeCCcccccccceEEEEcCCCCCceEcccCCCC-------cccceEccCCCceE
Confidence 3343333333333344347888888764331 246799998766667777664332 247999999988
Q ss_pred EEEEEeccCCceEEEEEEECCCCceeccc-ccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCCcccEEEEE-
Q 004766 146 LAYALSYSGSDWATIKLMRIEDQIVEADA-LSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYH- 223 (732)
Q Consensus 146 la~~~~~~G~e~~~i~v~dl~~g~~~~~~-~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~- 223 (732)
++|++..+|. .+||++++.+|+....+ ..+. ...++|||||+.|+|+.... ....+|.+
T Consensus 201 ~~y~S~~~g~--~~I~~~~l~~g~~~~lt~~~g~-~~~p~wSPDG~~Laf~s~~~----------------g~~di~~~~ 261 (428)
T PRK01029 201 YLYVSYKLGV--PKIFLGSLENPAGKKILALQGN-QLMPTFSPRKKLLAFISDRY----------------GNPDLFIQS 261 (428)
T ss_pred EEEEEccCCC--ceEEEEECCCCCceEeecCCCC-ccceEECCCCCEEEEEECCC----------------CCcceeEEE
Confidence 5557766664 69999999999844322 2222 25799999999999987432 11235553
Q ss_pred -ECCCCC-CCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCCCCcEEeeec
Q 004766 224 -FLGTKQ-SEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDG 301 (732)
Q Consensus 224 -~lgt~~-~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~ 301 (732)
++.++. .....+..... .....+.|||||++|+|.+.... ..+||++++.+.. ...+.++..
T Consensus 262 ~~~~~g~~g~~~~lt~~~~--~~~~~p~wSPDG~~Laf~s~~~g--~~~ly~~~~~~~g------------~~~~~lt~~ 325 (428)
T PRK01029 262 FSLETGAIGKPRRLLNEAF--GTQGNPSFSPDGTRLVFVSNKDG--RPRIYIMQIDPEG------------QSPRLLTKK 325 (428)
T ss_pred eecccCCCCcceEeecCCC--CCcCCeEECCCCCEEEEEECCCC--CceEEEEECcccc------------cceEEeccC
Confidence 443321 12223332211 12346899999999999876543 4679999875311 012334432
Q ss_pred cc-ceEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecC-CEEEEEEecCCeeEEEEEe
Q 004766 302 FD-AQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNL-NQMIVSYLSDVKYVLQIRD 379 (732)
Q Consensus 302 ~~-~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~-~~l~~~~~~~g~~~l~~~d 379 (732)
.. .....|||||++|+|.+..++ ..+|+++|+++++ .+.++... .....+.|+++ +.|++....++...|++++
T Consensus 326 ~~~~~~p~wSPDG~~Laf~~~~~g-~~~I~v~dl~~g~-~~~Lt~~~--~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vd 401 (428)
T PRK01029 326 YRNSSCPAWSPDGKKIAFCSVIKG-VRQICVYDLATGR-DYQLTTSP--ENKESPSWAIDSLHLVYSAGNSNESELYLIS 401 (428)
T ss_pred CCCccceeECCCCCEEEEEEcCCC-CcEEEEEECCCCC-eEEccCCC--CCccceEECCCCCEEEEEECCCCCceEEEEE
Confidence 22 123469999999999887644 5689999999887 45555432 34567888875 4577777777778999999
Q ss_pred CCCCceeeecccccceeeEeeccc
Q 004766 380 LKNGSLLHQLPIEIGSVNAISARR 403 (732)
Q Consensus 380 ~~~g~~~~~l~~~~g~v~~~~~s~ 403 (732)
+++++. +.|+...+.+..++++|
T Consensus 402 l~~g~~-~~Lt~~~g~~~~p~Ws~ 424 (428)
T PRK01029 402 LITKKT-RKIVIGSGEKRFPSWGA 424 (428)
T ss_pred CCCCCE-EEeecCCCcccCceecC
Confidence 986665 66664455554555554
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.2e-18 Score=187.71 Aligned_cols=260 Identities=19% Similarity=0.151 Sum_probs=174.8
Q ss_pred CEEEEEEE-cCCCCeeEEEEEeCCCCCceEEeCCCCcCCCCCEEEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCc
Q 004766 91 NKYFYFHN-TGLQPQSVLYVQDSLDAKAKVLLDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQI 169 (732)
Q Consensus 91 ~~~~~~~~-~~~~~~~~l~~r~~~~~~~~~l~D~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~ 169 (732)
.+..|... .+.+..+.||+.+..+...++|+..+.. +..++|||||++|+|+....|. .+||++|+.+|+
T Consensus 183 ~riayv~~~~~~~~~~~l~i~d~dG~~~~~l~~~~~~-------~~~p~wSPDG~~La~~s~~~g~--~~L~~~dl~tg~ 253 (448)
T PRK04792 183 TRIAYVVVNDKDKYPYQLMIADYDGYNEQMLLRSPEP-------LMSPAWSPDGRKLAYVSFENRK--AEIFVQDIYTQV 253 (448)
T ss_pred CEEEEEEeeCCCCCceEEEEEeCCCCCceEeecCCCc-------ccCceECCCCCEEEEEEecCCC--cEEEEEECCCCC
Confidence 35555543 3333346788877655556666654332 4579999999999999876554 689999999988
Q ss_pred eeccc-ccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEe
Q 004766 170 VEADA-LSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSG 248 (732)
Q Consensus 170 ~~~~~-~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~ 248 (732)
....+ ..+. ...++|||||+.|+|+.... ...+||++++.++... .+.. +......+
T Consensus 254 ~~~lt~~~g~-~~~~~wSPDG~~La~~~~~~----------------g~~~Iy~~dl~tg~~~--~lt~---~~~~~~~p 311 (448)
T PRK04792 254 REKVTSFPGI-NGAPRFSPDGKKLALVLSKD----------------GQPEIYVVDIATKALT--RITR---HRAIDTEP 311 (448)
T ss_pred eEEecCCCCC-cCCeeECCCCCEEEEEEeCC----------------CCeEEEEEECCCCCeE--ECcc---CCCCccce
Confidence 54322 2222 25789999999999986432 2357999999876533 2222 12234578
Q ss_pred EEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCCCCcEEeee-cccceEEEEEecCCeEEEEeCCCCCCc
Q 004766 249 HVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLID-GFDAQYEVIANDDTVFTFLTNKDAPKY 327 (732)
Q Consensus 249 ~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~s~dg~~l~~~s~~~~~~~ 327 (732)
.|||||++|++.+.+.. ..+||+++++++. .+.++. +.......|+|||+.|+|.+..+ ..+
T Consensus 312 ~wSpDG~~I~f~s~~~g--~~~Iy~~dl~~g~--------------~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~-g~~ 374 (448)
T PRK04792 312 SWHPDGKSLIFTSERGG--KPQIYRVNLASGK--------------VSRLTFEGEQNLGGSITPDGRSMIMVNRTN-GKF 374 (448)
T ss_pred EECCCCCEEEEEECCCC--CceEEEEECCCCC--------------EEEEecCCCCCcCeeECCCCCEEEEEEecC-Cce
Confidence 99999999999876544 4689999998753 334432 11112246999999999877653 467
Q ss_pred eEEEEeCCCCCCceEeccCCCCCceeEEEEecC-CEEEEEEecCCeeEEEEEeCCCCceeeecccccceeeEeeccc
Q 004766 328 KIIRVDLKEPNDWFEVIPEAERDVLESATAVNL-NQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARR 403 (732)
Q Consensus 328 ~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~-~~l~~~~~~~g~~~l~~~d~~~g~~~~~l~~~~g~v~~~~~s~ 403 (732)
+|+.+|++++. .+.+.... ......|+++ +.+++....++...|++++.+ |...+.++.+.+.+..++++|
T Consensus 375 ~I~~~dl~~g~-~~~lt~~~---~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~-G~~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 375 NIARQDLETGA-MQVLTSTR---LDESPSVAPNGTMVIYSTTYQGKQVLAAVSID-GRFKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred EEEEEECCCCC-eEEccCCC---CCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEECcCCCCCcCCCccCC
Confidence 89999998876 45444332 1224567765 567888888888899999986 766577776656555555554
|
|
| >PF05448 AXE1: Acetyl xylan esterase (AXE1); InterPro: IPR008391 This family consists of several bacterial acetyl xylan esterase proteins | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.7e-20 Score=187.63 Aligned_cols=243 Identities=19% Similarity=0.215 Sum_probs=159.2
Q ss_pred CCceEEEEEEEccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCc
Q 004766 447 SEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYG 526 (732)
Q Consensus 447 ~~~~~~~~~~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g 526 (732)
..+.+..+.|.+.+| ..|.++++.|++. .++.|+||..||..+.... +. ....+.. +||+|+.+|.||.|+..
T Consensus 52 ~~~~vy~v~f~s~~g-~~V~g~l~~P~~~--~~~~Pavv~~hGyg~~~~~--~~-~~~~~a~-~G~~vl~~d~rGqg~~~ 124 (320)
T PF05448_consen 52 PGVEVYDVSFESFDG-SRVYGWLYRPKNA--KGKLPAVVQFHGYGGRSGD--PF-DLLPWAA-AGYAVLAMDVRGQGGRS 124 (320)
T ss_dssp SSEEEEEEEEEEGGG-EEEEEEEEEES-S--SSSEEEEEEE--TT--GGG--HH-HHHHHHH-TT-EEEEE--TTTSSSS
T ss_pred CCEEEEEEEEEccCC-CEEEEEEEecCCC--CCCcCEEEEecCCCCCCCC--cc-ccccccc-CCeEEEEecCCCCCCCC
Confidence 456788899999999 9999999999953 4899999999997654221 11 2234445 99999999999998544
Q ss_pred hhHHh-----------cccccCCc-----cHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEE
Q 004766 527 EEWHK-----------GGALAKKQ-----NCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCAL 590 (732)
Q Consensus 527 ~~~~~-----------~~~~~~~~-----~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v 590 (732)
++... .+...... +.+.|.+.++++|.++..+|++||+++|.|.||.++++++...| ++++++
T Consensus 125 ~d~~~~~~~~~~g~~~~g~~~~~e~~yyr~~~~D~~ravd~l~slpevD~~rI~v~G~SqGG~lal~~aaLd~-rv~~~~ 203 (320)
T PF05448_consen 125 PDYRGSSGGTLKGHITRGIDDNPEDYYYRRVYLDAVRAVDFLRSLPEVDGKRIGVTGGSQGGGLALAAAALDP-RVKAAA 203 (320)
T ss_dssp -B-SSBSSS-SSSSTTTTTTS-TTT-HHHHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHHHHSS-T-SEEE
T ss_pred CCccccCCCCCccHHhcCccCchHHHHHHHHHHHHHHHHHHHHhCCCcCcceEEEEeecCchHHHHHHHHhCc-cccEEE
Confidence 33211 11111011 34799999999999999999999999999999999999999965 699999
Q ss_pred EcCCcc-cccccccCCC-CCccc--c---ccCCC---CCHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEeeCCC
Q 004766 591 AHVGVM-DMLRYHKFTI-GHAWV--S---DFGCS---EEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHD 660 (732)
Q Consensus 591 ~~~p~~-d~~~~~~~~~-~~~~~--~---~~g~p---~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D 660 (732)
+.+|++ |..+...... ...|. . .+.++ ..++.++.|.=++....++. +++|+|+..|..|
T Consensus 204 ~~vP~l~d~~~~~~~~~~~~~y~~~~~~~~~~d~~~~~~~~v~~~L~Y~D~~nfA~r----------i~~pvl~~~gl~D 273 (320)
T PF05448_consen 204 ADVPFLCDFRRALELRADEGPYPEIRRYFRWRDPHHEREPEVFETLSYFDAVNFARR----------IKCPVLFSVGLQD 273 (320)
T ss_dssp EESESSSSHHHHHHHT--STTTHHHHHHHHHHSCTHCHHHHHHHHHHTT-HHHHGGG------------SEEEEEEETT-
T ss_pred ecCCCccchhhhhhcCCccccHHHHHHHHhccCCCcccHHHHHHHHhhhhHHHHHHH----------cCCCEEEEEecCC
Confidence 999964 5444332221 11110 1 11222 23445555555566666665 8999999999999
Q ss_pred CCCCchHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeCCCCCCCCCchHHHHHHHHHHHHHHHHH
Q 004766 661 DRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKM 725 (732)
Q Consensus 661 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~ 725 (732)
+.|||.-....+++|. .+.++.+||..||...... .....+.||.+|
T Consensus 274 ~~cPP~t~fA~yN~i~-------------~~K~l~vyp~~~He~~~~~-----~~~~~~~~l~~~ 320 (320)
T PF05448_consen 274 PVCPPSTQFAAYNAIP-------------GPKELVVYPEYGHEYGPEF-----QEDKQLNFLKEH 320 (320)
T ss_dssp SSS-HHHHHHHHCC---------------SSEEEEEETT--SSTTHHH-----HHHHHHHHHHH-
T ss_pred CCCCchhHHHHHhccC-------------CCeeEEeccCcCCCchhhH-----HHHHHHHHHhcC
Confidence 9999999998888875 2489999999999875422 234577888765
|
Acetyl xylan esterases are enzymes that hydrolyse the ester linkages of the acetyl groups in position 2 and/or 3 of the xylose moieties of natural acetylated xylan from hardwood. These enzymes are one of the accessory enzymes which are part of the xylanolytic system, together with xylanases, beta-xylosidases, alpha-arabinofuranosidases and methylglucuronidases; these are all required for the complete hydrolysis of xylan [].; PDB: 1VLQ_H 3M81_E 3M82_D 3M83_C 3FCY_A 1ODS_F 1ODT_C 1L7A_A 3FYT_A 2XLB_F .... |
| >COG3458 Acetyl esterase (deacetylase) [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.6e-19 Score=169.73 Aligned_cols=231 Identities=18% Similarity=0.182 Sum_probs=165.6
Q ss_pred CCCCceEEEEEEEccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCC
Q 004766 445 DRSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGE 524 (732)
Q Consensus 445 ~~~~~~~~~~~~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~ 524 (732)
.....++-.++|++.+| .+|.+|++.|+.- .++.|+||..||..+.... ...+..|.. .||+|+.+|.||.|+
T Consensus 50 ~~~~ve~ydvTf~g~~g-~rI~gwlvlP~~~--~~~~P~vV~fhGY~g~~g~---~~~~l~wa~-~Gyavf~MdvRGQg~ 122 (321)
T COG3458 50 TLPRVEVYDVTFTGYGG-ARIKGWLVLPRHE--KGKLPAVVQFHGYGGRGGE---WHDMLHWAV-AGYAVFVMDVRGQGS 122 (321)
T ss_pred cCCceEEEEEEEeccCC-ceEEEEEEeeccc--CCccceEEEEeeccCCCCC---ccccccccc-cceeEEEEecccCCC
Confidence 33456788899999999 9999999999874 3899999999997665432 223445555 999999999999887
Q ss_pred Cch------------hHHhcccccCC-----ccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeee
Q 004766 525 YGE------------EWHKGGALAKK-----QNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFG 587 (732)
Q Consensus 525 ~g~------------~~~~~~~~~~~-----~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~ 587 (732)
+.. .|+..|..+++ ...|.|+..+++-|.+...+|.+||++.|+|.||.|+++++...| +.+
T Consensus 123 ~~~dt~~~p~~~s~pG~mtrGilD~kd~yyyr~v~~D~~~ave~~~sl~~vde~Ri~v~G~SqGGglalaaaal~~-rik 201 (321)
T COG3458 123 SSQDTADPPGGPSDPGFMTRGILDRKDTYYYRGVFLDAVRAVEILASLDEVDEERIGVTGGSQGGGLALAAAALDP-RIK 201 (321)
T ss_pred ccccCCCCCCCCcCCceeEeecccCCCceEEeeehHHHHHHHHHHhccCccchhheEEeccccCchhhhhhhhcCh-hhh
Confidence 632 13333333322 245899999999999999999999999999999999999999865 899
Q ss_pred EEEEcCCccc-ccccccCCCCCccccc---c---CCCCCHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEeeCCC
Q 004766 588 CALAHVGVMD-MLRYHKFTIGHAWVSD---F---GCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHD 660 (732)
Q Consensus 588 a~v~~~p~~d-~~~~~~~~~~~~~~~~---~---g~p~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D 660 (732)
++++.+|++. ..+.........+ .| | -.|...+.++.|.=++- .|... .++.|+|+..|.-|
T Consensus 202 ~~~~~~Pfl~df~r~i~~~~~~~y-dei~~y~k~h~~~e~~v~~TL~yfD~-~n~A~---------RiK~pvL~svgL~D 270 (321)
T COG3458 202 AVVADYPFLSDFPRAIELATEGPY-DEIQTYFKRHDPKEAEVFETLSYFDI-VNLAA---------RIKVPVLMSVGLMD 270 (321)
T ss_pred cccccccccccchhheeecccCcH-HHHHHHHHhcCchHHHHHHHHhhhhh-hhHHH---------hhccceEEeecccC
Confidence 9999999863 3332222111111 11 1 12333333333322222 23333 48999999999999
Q ss_pred CCCCchHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeCCCCCCCCCc
Q 004766 661 DRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLP 707 (732)
Q Consensus 661 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~ 707 (732)
+.|||.-....+++|.. +..+.+|+.-+|.....
T Consensus 271 ~vcpPstqFA~yN~l~~-------------~K~i~iy~~~aHe~~p~ 304 (321)
T COG3458 271 PVCPPSTQFAAYNALTT-------------SKTIEIYPYFAHEGGPG 304 (321)
T ss_pred CCCCChhhHHHhhcccC-------------CceEEEeeccccccCcc
Confidence 99999998888888753 35777888888987644
|
|
| >PLN02298 hydrolase, alpha/beta fold family protein | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.8e-18 Score=182.54 Aligned_cols=265 Identities=12% Similarity=0.046 Sum_probs=166.2
Q ss_pred CCCCceEEEEEEEccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCC
Q 004766 445 DRSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGE 524 (732)
Q Consensus 445 ~~~~~~~~~~~~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~ 524 (732)
.+..+..+...+++.|| .+|.+....|.+. ..+.|+||++||..... ...|.. +...|.++||.|+++|+||.|.
T Consensus 26 ~~~~~~~~~~~~~~~dg-~~l~~~~~~~~~~--~~~~~~VvllHG~~~~~-~~~~~~-~~~~L~~~Gy~V~~~D~rGhG~ 100 (330)
T PLN02298 26 ALKGIKGSKSFFTSPRG-LSLFTRSWLPSSS--SPPRALIFMVHGYGNDI-SWTFQS-TAIFLAQMGFACFALDLEGHGR 100 (330)
T ss_pred hccCCccccceEEcCCC-CEEEEEEEecCCC--CCCceEEEEEcCCCCCc-ceehhH-HHHHHHhCCCEEEEecCCCCCC
Confidence 44455566667888899 9999988877542 23578999999975432 223332 3344565899999999999886
Q ss_pred CchhHHhcccccCCccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCcccccccccC
Q 004766 525 YGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKF 604 (732)
Q Consensus 525 ~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~ 604 (732)
.... .+....-....+|+.+++++|....-.+..++.++|+|+||++++.++.++|++++++|+.+|+.++......
T Consensus 101 S~~~---~~~~~~~~~~~~D~~~~i~~l~~~~~~~~~~i~l~GhSmGG~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~ 177 (330)
T PLN02298 101 SEGL---RAYVPNVDLVVEDCLSFFNSVKQREEFQGLPRFLYGESMGGAICLLIHLANPEGFDGAVLVAPMCKISDKIRP 177 (330)
T ss_pred CCCc---cccCCCHHHHHHHHHHHHHHHHhcccCCCCCEEEEEecchhHHHHHHHhcCcccceeEEEecccccCCcccCC
Confidence 5321 1111112234688999999998654334457999999999999999999999999999999887653221100
Q ss_pred C--------CCCccccc---------cCC-CCCHHHHHHHHhcCcccCCCCC-----------CC-CCCCCCCCCCeEEE
Q 004766 605 T--------IGHAWVSD---------FGC-SEEEEEFYWLIKYSPLHNVRRP-----------WE-QNPDKPFQYPSTLL 654 (732)
Q Consensus 605 ~--------~~~~~~~~---------~g~-p~~~~~~~~~~~~sp~~~~~~~-----------~~-~~~~~~~~~~p~Li 654 (732)
. ....+... +.. ...+ ....+...+|....... .+ .......+..|+||
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLi 256 (330)
T PLN02298 178 PWPIPQILTFVARFLPTLAIVPTADLLEKSVKVP-AKKIIAKRNPMRYNGKPRLGTVVELLRVTDYLGKKLKDVSIPFIV 256 (330)
T ss_pred chHHHHHHHHHHHHCCCCccccCCCcccccccCH-HHHHHHHhCccccCCCccHHHHHHHHHHHHHHHHhhhhcCCCEEE
Confidence 0 00000000 000 0000 01111222222110000 00 00001137899999
Q ss_pred EeeCCCCCCCchHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeCCCCCCCCC--chHHHHHHHHHHHHHHHHHhCCCc
Q 004766 655 LTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGL--PTQKMIDEAADRYGFMAKMLGASW 730 (732)
Q Consensus 655 ~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~--~~~~~~~~~~~~~~fl~~~l~~~~ 730 (732)
+||.+|..||+.++.++++++.. ....+++++++||.... +..........+.+||.++++..+
T Consensus 257 i~G~~D~ivp~~~~~~l~~~i~~------------~~~~l~~~~~a~H~~~~e~pd~~~~~~~~~i~~fl~~~~~~~~ 322 (330)
T PLN02298 257 LHGSADVVTDPDVSRALYEEAKS------------EDKTIKIYDGMMHSLLFGEPDENIEIVRRDILSWLNERCTGKA 322 (330)
T ss_pred EecCCCCCCCHHHHHHHHHHhcc------------CCceEEEcCCcEeeeecCCCHHHHHHHHHHHHHHHHHhccCCC
Confidence 99999999999999999888762 23588899999999753 332224566778999999987653
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.9e-18 Score=182.66 Aligned_cols=260 Identities=16% Similarity=0.110 Sum_probs=174.5
Q ss_pred CEEEEEEEcC-CCCeeEEEEEeCCCCCceEEeCCCCcCCCCCEEEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCc
Q 004766 91 NKYFYFHNTG-LQPQSVLYVQDSLDAKAKVLLDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQI 169 (732)
Q Consensus 91 ~~~~~~~~~~-~~~~~~l~~r~~~~~~~~~l~D~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~ 169 (732)
.++.|..... +...+.||+.+..+...+.++..+. .+..++|||||++|||+....|. .+|+++|+.+|+
T Consensus 164 ~riayv~~~~~~~~~~~l~~~d~dg~~~~~lt~~~~-------~~~~p~wSPDG~~la~~s~~~g~--~~i~i~dl~~G~ 234 (429)
T PRK03629 164 TRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQ-------PLMSPAWSPDGSKLAYVTFESGR--SALVIQTLANGA 234 (429)
T ss_pred CeEEEEEeeCCCCcceeEEEEcCCCCCCEEeecCCC-------ceeeeEEcCCCCEEEEEEecCCC--cEEEEEECCCCC
Confidence 5677776533 3335679998865555666665432 24689999999999999765553 689999999987
Q ss_pred eeccc-ccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEe
Q 004766 170 VEADA-LSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSG 248 (732)
Q Consensus 170 ~~~~~-~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~ 248 (732)
....+ ..+ ....++|||||+.|+|+.... ...+||++++.++... .+... ......+
T Consensus 235 ~~~l~~~~~-~~~~~~~SPDG~~La~~~~~~----------------g~~~I~~~d~~tg~~~--~lt~~---~~~~~~~ 292 (429)
T PRK03629 235 VRQVASFPR-HNGAPAFSPDGSKLAFALSKT----------------GSLNLYVMDLASGQIR--QVTDG---RSNNTEP 292 (429)
T ss_pred eEEccCCCC-CcCCeEECCCCCEEEEEEcCC----------------CCcEEEEEECCCCCEE--EccCC---CCCcCce
Confidence 43322 222 236799999999999985322 2246999999776432 22222 2234578
Q ss_pred EEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCCCCcEEeeeccc-ceEEEEEecCCeEEEEeCCCCCCc
Q 004766 249 HVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFD-AQYEVIANDDTVFTFLTNKDAPKY 327 (732)
Q Consensus 249 ~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~s~dg~~l~~~s~~~~~~~ 327 (732)
.|||||++|+|.+.+.. ..+||.++++++. .+.++.... .....|+|||+.|++.+..++ ..
T Consensus 293 ~wSPDG~~I~f~s~~~g--~~~Iy~~d~~~g~--------------~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g-~~ 355 (429)
T PRK03629 293 TWFPDSQNLAYTSDQAG--RPQVYKVNINGGA--------------PQRITWEGSQNQDADVSSDGKFMVMVSSNGG-QQ 355 (429)
T ss_pred EECCCCCEEEEEeCCCC--CceEEEEECCCCC--------------eEEeecCCCCccCEEECCCCCEEEEEEccCC-Cc
Confidence 99999999999886543 4689999988743 233433211 123468999999998877544 56
Q ss_pred eEEEEeCCCCCCceEeccCCCCCceeEEEEecCC-EEEEEEecCCeeEEEEEeCCCCceeeecccccceeeEeeccc
Q 004766 328 KIIRVDLKEPNDWFEVIPEAERDVLESATAVNLN-QMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARR 403 (732)
Q Consensus 328 ~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~-~l~~~~~~~g~~~l~~~d~~~g~~~~~l~~~~g~v~~~~~s~ 403 (732)
.|+.+|++++. .+.|.... ....+.|++|+ .+++...+.+...|++++++ |+..++|+...+.+..++++|
T Consensus 356 ~I~~~dl~~g~-~~~Lt~~~---~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~-G~~~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 356 HIAKQDLATGG-VQVLTDTF---LDETPSIAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDGQVKFPAWSP 427 (429)
T ss_pred eEEEEECCCCC-eEEeCCCC---CCCCceECCCCCEEEEEEcCCCceEEEEEECC-CCCeEECccCCCCcCCcccCC
Confidence 79999998876 55555322 23457788764 46666666666789999996 665567765455565555554
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.9e-18 Score=184.28 Aligned_cols=261 Identities=13% Similarity=0.086 Sum_probs=172.6
Q ss_pred CCEEEEEEEcCCC--CeeEEEEEeCCCCCceEEeCCCCcCCCCCEEEEeEEECCCCcEEEEEEeccCCceEEEEEEECCC
Q 004766 90 GNKYFYFHNTGLQ--PQSVLYVQDSLDAKAKVLLDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIED 167 (732)
Q Consensus 90 g~~~~~~~~~~~~--~~~~l~~r~~~~~~~~~l~D~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~ 167 (732)
..+++|..+..+. ....||+.+..+...+.|+..+. .+..++|||||++|||+...+|. .+||++|+++
T Consensus 165 ~~~iafv~~~~~~~~~~~~l~~~d~dg~~~~~lt~~~~-------~v~~p~wSpDG~~lay~s~~~g~--~~i~~~dl~~ 235 (435)
T PRK05137 165 DTRIVYVAESGPKNKRIKRLAIMDQDGANVRYLTDGSS-------LVLTPRFSPNRQEITYMSYANGR--PRVYLLDLET 235 (435)
T ss_pred CCeEEEEEeeCCCCCcceEEEEECCCCCCcEEEecCCC-------CeEeeEECCCCCEEEEEEecCCC--CEEEEEECCC
Confidence 4577887654432 24678988765555566664432 25689999999999999876654 6999999999
Q ss_pred CceecccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEE
Q 004766 168 QIVEADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFS 247 (732)
Q Consensus 168 g~~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~ 247 (732)
|+....+........++|||||+.|+|+.... ...+||++++.++... .+.. .......
T Consensus 236 g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~----------------g~~~Iy~~d~~~~~~~--~Lt~---~~~~~~~ 294 (435)
T PRK05137 236 GQRELVGNFPGMTFAPRFSPDGRKVVMSLSQG----------------GNTDIYTMDLRSGTTT--RLTD---SPAIDTS 294 (435)
T ss_pred CcEEEeecCCCcccCcEECCCCCEEEEEEecC----------------CCceEEEEECCCCceE--EccC---CCCccCc
Confidence 98543321111236789999999999986432 2357999999876432 2222 2233457
Q ss_pred eEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCCCCcEEeeecc-cceEEEEEecCCeEEEEeCCCCCC
Q 004766 248 GHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGF-DAQYEVIANDDTVFTFLTNKDAPK 326 (732)
Q Consensus 248 ~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~s~dg~~l~~~s~~~~~~ 326 (732)
+.|||||++|+|.+.+.. ..+||++|++++. .+.++... ......|+|||+.|+|.+... ..
T Consensus 295 ~~~spDG~~i~f~s~~~g--~~~Iy~~d~~g~~--------------~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~-~~ 357 (435)
T PRK05137 295 PSYSPDGSQIVFESDRSG--SPQLYVMNADGSN--------------PRRISFGGGRYSTPVWSPRGDLIAFTKQGG-GQ 357 (435)
T ss_pred eeEcCCCCEEEEEECCCC--CCeEEEEECCCCC--------------eEEeecCCCcccCeEECCCCCEEEEEEcCC-Cc
Confidence 899999999999875543 4689999987743 34444321 112245999999999887643 35
Q ss_pred ceEEEEeCCCCCCceEeccCCCCCceeEEEEecC-CEEEEEEecCCe---eEEEEEeCCCCceeeecccccceeeEeecc
Q 004766 327 YKIIRVDLKEPNDWFEVIPEAERDVLESATAVNL-NQMIVSYLSDVK---YVLQIRDLKNGSLLHQLPIEIGSVNAISAR 402 (732)
Q Consensus 327 ~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~-~~l~~~~~~~g~---~~l~~~d~~~g~~~~~l~~~~g~v~~~~~s 402 (732)
++|+.+|++++. .+ ++... .....+.|++| +.|++.....+. ..|+++++++++. +.|+. .+.+..+.++
T Consensus 358 ~~i~~~d~~~~~-~~-~lt~~--~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~~-~~~~~~p~Ws 431 (435)
T PRK05137 358 FSIGVMKPDGSG-ER-ILTSG--FLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE-REVPT-PGDASDPAWS 431 (435)
T ss_pred eEEEEEECCCCc-eE-eccCC--CCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce-EEccC-CCCccCcccC
Confidence 789999987665 33 33333 23567888876 456666665554 5899999974444 66653 3444444444
Q ss_pred c
Q 004766 403 R 403 (732)
Q Consensus 403 ~ 403 (732)
|
T Consensus 432 p 432 (435)
T PRK05137 432 P 432 (435)
T ss_pred C
Confidence 3
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.6e-18 Score=181.01 Aligned_cols=251 Identities=12% Similarity=0.082 Sum_probs=168.3
Q ss_pred EEEEEEcCCCCeeEEEEEeCCCCCceEEeCCCCcCCCCCEEEEeEEECCCCcE-EEEEEeccCCceEEEEEEECCCCcee
Q 004766 93 YFYFHNTGLQPQSVLYVQDSLDAKAKVLLDPNTLSDDGTAALIKVSVSEDAKY-LAYALSYSGSDWATIKLMRIEDQIVE 171 (732)
Q Consensus 93 ~~~~~~~~~~~~~~l~~r~~~~~~~~~l~D~~~l~~~~~~~~~~~~~SPDG~~-la~~~~~~G~e~~~i~v~dl~~g~~~ 171 (732)
.|+.+..+. ....||+.+..+..+++++... . ...+.|||||++ ++|+...++. .+||++|+.+|+..
T Consensus 158 ~~v~~~~~~-~~~~l~~~d~dg~~~~~~~~~~-~-------~~~p~wSpDG~~~i~y~s~~~~~--~~Iyv~dl~tg~~~ 226 (419)
T PRK04043 158 VVFSKYTGP-KKSNIVLADYTLTYQKVIVKGG-L-------NIFPKWANKEQTAFYYTSYGERK--PTLYKYNLYTGKKE 226 (419)
T ss_pred EEEEEccCC-CcceEEEECCCCCceeEEccCC-C-------eEeEEECCCCCcEEEEEEccCCC--CEEEEEECCCCcEE
Confidence 444443333 3467999886555566655432 2 347999999997 5555544333 59999999999854
Q ss_pred cccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEe
Q 004766 172 ADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVT 251 (732)
Q Consensus 172 ~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~S 251 (732)
..+........+.|||||+.|+|+.... ...+||++++.++... .+... +.....+.||
T Consensus 227 ~lt~~~g~~~~~~~SPDG~~la~~~~~~----------------g~~~Iy~~dl~~g~~~--~LT~~---~~~d~~p~~S 285 (419)
T PRK04043 227 KIASSQGMLVVSDVSKDGSKLLLTMAPK----------------GQPDIYLYDTNTKTLT--QITNY---PGIDVNGNFV 285 (419)
T ss_pred EEecCCCcEEeeEECCCCCEEEEEEccC----------------CCcEEEEEECCCCcEE--EcccC---CCccCccEEC
Confidence 4332221235689999999999987432 2357999998776432 23222 2223468899
Q ss_pred cCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCCCCcEEeeecccceEEEEEecCCeEEEEeCCCC-----CC
Q 004766 252 EDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDA-----PK 326 (732)
Q Consensus 252 pDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~-----~~ 326 (732)
|||+.|+|.+.+.. ..+||++|++++. .++++..... ...|||||+.|+|.+.... ..
T Consensus 286 PDG~~I~F~Sdr~g--~~~Iy~~dl~~g~--------------~~rlt~~g~~-~~~~SPDG~~Ia~~~~~~~~~~~~~~ 348 (419)
T PRK04043 286 EDDKRIVFVSDRLG--YPNIFMKKLNSGS--------------VEQVVFHGKN-NSSVSTYKNYIVYSSRETNNEFGKNT 348 (419)
T ss_pred CCCCEEEEEECCCC--CceEEEEECCCCC--------------eEeCccCCCc-CceECCCCCEEEEEEcCCCcccCCCC
Confidence 99999999987654 5789999998754 2334332111 1369999999999887542 23
Q ss_pred ceEEEEeCCCCCCceEeccCCCCCceeEEEEecC-CEEEEEEecCCeeEEEEEeCCCCceeeecccccceee
Q 004766 327 YKIIRVDLKEPNDWFEVIPEAERDVLESATAVNL-NQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVN 397 (732)
Q Consensus 327 ~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~-~~l~~~~~~~g~~~l~~~d~~~g~~~~~l~~~~g~v~ 397 (732)
++|+.+|++++. .+.|+... ....+.|++| ..+++.....+...|++++++ |....+++...|.+.
T Consensus 349 ~~I~v~d~~~g~-~~~LT~~~---~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~-g~~~~~l~~~~g~~~ 415 (419)
T PRK04043 349 FNLYLISTNSDY-IRRLTANG---VNQFPRFSSDGGSIMFIKYLGNQSALGIIRLN-YNKSFLFPLKVGKIQ 415 (419)
T ss_pred cEEEEEECCCCC-eEECCCCC---CcCCeEECCCCCEEEEEEccCCcEEEEEEecC-CCeeEEeecCCCccC
Confidence 789999998886 56666542 2345788886 457777777777889999997 654466665555553
|
|
| >PRK10162 acetyl esterase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=3e-18 Score=178.40 Aligned_cols=238 Identities=15% Similarity=0.101 Sum_probs=161.6
Q ss_pred ceEEEEEEEccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCC-cChhHHHHHHhcCcEEEEEcccCCCCCch
Q 004766 449 FHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPS-FSVSRTILMRHLGAVFCIANIRGGGEYGE 527 (732)
Q Consensus 449 ~~~~~~~~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~-~~~~~~~~l~~~G~~v~~~~~rG~g~~g~ 527 (732)
...+.+.+++.+| .|++.+++|+. ...|+|||+|||........ +......+....|+.|+.+|||...+.
T Consensus 55 ~~~~~~~i~~~~g--~i~~~~y~P~~----~~~p~vv~~HGGg~~~g~~~~~~~~~~~la~~~g~~Vv~vdYrlape~-- 126 (318)
T PRK10162 55 MATRAYMVPTPYG--QVETRLYYPQP----DSQATLFYLHGGGFILGNLDTHDRIMRLLASYSGCTVIGIDYTLSPEA-- 126 (318)
T ss_pred ceEEEEEEecCCC--ceEEEEECCCC----CCCCEEEEEeCCcccCCCchhhhHHHHHHHHHcCCEEEEecCCCCCCC--
Confidence 3467778888787 59999999964 34699999999865433322 333233344436999999999987652
Q ss_pred hHHhcccccCCccHHHHHHHHHHHHHHc---CCCCCCcEEEEecChhHHHHHHHHhhC------CCeeeEEEEcCCcccc
Q 004766 528 EWHKGGALAKKQNCFDDFISASEYLISA---GYTQSRKLCIEGGSNGGLLVGACINQR------PDLFGCALAHVGVMDM 598 (732)
Q Consensus 528 ~~~~~~~~~~~~~~~~D~~~~~~~l~~~---~~~d~~~i~i~G~S~GG~l~~~~~~~~------p~~f~a~v~~~p~~d~ 598 (732)
.....++|+.++++|+.++ --+|++||+|+|+|+||.|++.++.+. +..++++|+.+|++|+
T Consensus 127 ---------~~p~~~~D~~~a~~~l~~~~~~~~~d~~~i~l~G~SaGG~la~~~a~~~~~~~~~~~~~~~~vl~~p~~~~ 197 (318)
T PRK10162 127 ---------RFPQAIEEIVAVCCYFHQHAEDYGINMSRIGFAGDSAGAMLALASALWLRDKQIDCGKVAGVLLWYGLYGL 197 (318)
T ss_pred ---------CCCCcHHHHHHHHHHHHHhHHHhCCChhHEEEEEECHHHHHHHHHHHHHHhcCCCccChhheEEECCccCC
Confidence 1234679999999999764 236899999999999999999888642 3578899999999886
Q ss_pred cccccCCCCCccccccCCC---CCHHHHHHHH---------hcCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCch
Q 004766 599 LRYHKFTIGHAWVSDFGCS---EEEEEFYWLI---------KYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPL 666 (732)
Q Consensus 599 ~~~~~~~~~~~~~~~~g~p---~~~~~~~~~~---------~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~ 666 (732)
..... + ..++.. -..+..+++. ..+|+...... +.....||+||++|+.|..+ .
T Consensus 198 ~~~~s------~-~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~p~~~p~~~-----~l~~~lPp~~i~~g~~D~L~--d 263 (318)
T PRK10162 198 RDSVS------R-RLLGGVWDGLTQQDLQMYEEAYLSNDADRESPYYCLFNN-----DLTRDVPPCFIAGAEFDPLL--D 263 (318)
T ss_pred CCChh------H-HHhCCCccccCHHHHHHHHHHhCCCccccCCcccCcchh-----hhhcCCCCeEEEecCCCcCc--C
Confidence 32110 0 111110 0111111111 12333221000 00014699999999999876 5
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeCCCCCCCCCc---hHHHHHHHHHHHHHHHHHhC
Q 004766 667 HSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLP---TQKMIDEAADRYGFMAKMLG 727 (732)
Q Consensus 667 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~---~~~~~~~~~~~~~fl~~~l~ 727 (732)
++..|+++|+++ |++++++++++..|++... ..+..+.+..+.+||.++|+
T Consensus 264 e~~~~~~~L~~a----------Gv~v~~~~~~g~~H~f~~~~~~~~~a~~~~~~~~~~l~~~~~ 317 (318)
T PRK10162 264 DSRLLYQTLAAH----------QQPCEFKLYPGTLHAFLHYSRMMDTADDALRDGAQFFTAQLK 317 (318)
T ss_pred hHHHHHHHHHHc----------CCCEEEEEECCCceehhhccCchHHHHHHHHHHHHHHHHHhc
Confidence 899999999998 9999999999999998532 23345667778889988875
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=8.9e-18 Score=182.48 Aligned_cols=258 Identities=15% Similarity=0.113 Sum_probs=172.8
Q ss_pred CEEEEEEEcCCCCeeEEEEEeCCCCCceEEeCCCCcCCCCCEEEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCce
Q 004766 91 NKYFYFHNTGLQPQSVLYVQDSLDAKAKVLLDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIV 170 (732)
Q Consensus 91 ~~~~~~~~~~~~~~~~l~~r~~~~~~~~~l~D~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~ 170 (732)
+++.|.....+ ...||..+..+...+.++..+. .+..++|||||++|||+....+. .+||++|+.+|+.
T Consensus 164 ~~iayv~~~~~--~~~L~~~D~dG~~~~~l~~~~~-------~v~~p~wSPDG~~la~~s~~~~~--~~I~~~dl~~g~~ 232 (427)
T PRK02889 164 TRIAYVIKTGN--RYQLQISDADGQNAQSALSSPE-------PIISPAWSPDGTKLAYVSFESKK--PVVYVHDLATGRR 232 (427)
T ss_pred cEEEEEEccCC--ccEEEEECCCCCCceEeccCCC-------CcccceEcCCCCEEEEEEccCCC--cEEEEEECCCCCE
Confidence 56777654322 3558887754444455554332 24589999999999999865443 6899999999975
Q ss_pred eccc-ccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeE
Q 004766 171 EADA-LSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGH 249 (732)
Q Consensus 171 ~~~~-~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~ 249 (732)
...+ ..+ ....++|||||+.|+|+.... ...+||.+++.++... .+.. .......+.
T Consensus 233 ~~l~~~~g-~~~~~~~SPDG~~la~~~~~~----------------g~~~Iy~~d~~~~~~~--~lt~---~~~~~~~~~ 290 (427)
T PRK02889 233 RVVANFKG-SNSAPAWSPDGRTLAVALSRD----------------GNSQIYTVNADGSGLR--RLTQ---SSGIDTEPF 290 (427)
T ss_pred EEeecCCC-CccceEECCCCCEEEEEEccC----------------CCceEEEEECCCCCcE--ECCC---CCCCCcCeE
Confidence 4332 222 236799999999999975432 2357999988665422 2221 122335688
Q ss_pred EecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCCCCcEEeeeccc-ceEEEEEecCCeEEEEeCCCCCCce
Q 004766 250 VTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFD-AQYEVIANDDTVFTFLTNKDAPKYK 328 (732)
Q Consensus 250 ~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~s~dg~~l~~~s~~~~~~~~ 328 (732)
|||||++|+|.+.+.. ..+||.+++.++. .+.++.... .....|||||+.|++.++.++ .+.
T Consensus 291 wSpDG~~l~f~s~~~g--~~~Iy~~~~~~g~--------------~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g-~~~ 353 (427)
T PRK02889 291 FSPDGRSIYFTSDRGG--APQIYRMPASGGA--------------AQRVTFTGSYNTSPRISPDGKLLAYISRVGG-AFK 353 (427)
T ss_pred EcCCCCEEEEEecCCC--CcEEEEEECCCCc--------------eEEEecCCCCcCceEECCCCCEEEEEEccCC-cEE
Confidence 9999999999875543 4679999987642 233332111 112469999999998887643 568
Q ss_pred EEEEeCCCCCCceEeccCCCCCceeEEEEecC-CEEEEEEecCCeeEEEEEeCCCCceeeecccccceeeEeeccc
Q 004766 329 IIRVDLKEPNDWFEVIPEAERDVLESATAVNL-NQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARR 403 (732)
Q Consensus 329 l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~-~~l~~~~~~~g~~~l~~~d~~~g~~~~~l~~~~g~v~~~~~s~ 403 (732)
|+++|+.++. .+.++... ..+.+.|+++ ..|++.....+...|++++++ |+..+.++.+.|.+..++++|
T Consensus 354 I~v~d~~~g~-~~~lt~~~---~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~-g~~~~~l~~~~g~~~~p~wsp 424 (427)
T PRK02889 354 LYVQDLATGQ-VTALTDTT---RDESPSFAPNGRYILYATQQGGRSVLAAVSSD-GRIKQRLSVQGGDVREPSWGP 424 (427)
T ss_pred EEEEECCCCC-eEEccCCC---CccCceECCCCCEEEEEEecCCCEEEEEEECC-CCceEEeecCCCCCCCCccCC
Confidence 9999998876 45554332 2356788875 567788878888899999996 766567766666666666654
|
|
| >PRK05077 frsA fermentation/respiration switch protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.7e-18 Score=185.80 Aligned_cols=237 Identities=14% Similarity=0.027 Sum_probs=156.1
Q ss_pred ceEEEEEEEccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchh
Q 004766 449 FHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEE 528 (732)
Q Consensus 449 ~~~~~~~~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~ 528 (732)
+..+.+.++..+| ..|+++++.|+. +++.|+||+.|| ++......|.. +...|+++||+|+++|+||.|+...
T Consensus 166 ~~~e~v~i~~~~g-~~l~g~l~~P~~---~~~~P~Vli~gG-~~~~~~~~~~~-~~~~La~~Gy~vl~~D~pG~G~s~~- 238 (414)
T PRK05077 166 GELKELEFPIPGG-GPITGFLHLPKG---DGPFPTVLVCGG-LDSLQTDYYRL-FRDYLAPRGIAMLTIDMPSVGFSSK- 238 (414)
T ss_pred CceEEEEEEcCCC-cEEEEEEEECCC---CCCccEEEEeCC-cccchhhhHHH-HHHHHHhCCCEEEEECCCCCCCCCC-
Confidence 4578899998888 899999999973 367898876544 54432223332 3445666999999999999876422
Q ss_pred HHhcccccCCccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCccccccccc--CC-
Q 004766 529 WHKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHK--FT- 605 (732)
Q Consensus 529 ~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~--~~- 605 (732)
+. ..........+++++|.....+|++||+++|+|+||++++.++..+|++++++|+..|+++.+.... ..
T Consensus 239 ~~------~~~d~~~~~~avld~l~~~~~vd~~ri~l~G~S~GG~~Al~~A~~~p~ri~a~V~~~~~~~~~~~~~~~~~~ 312 (414)
T PRK05077 239 WK------LTQDSSLLHQAVLNALPNVPWVDHTRVAAFGFRFGANVAVRLAYLEPPRLKAVACLGPVVHTLLTDPKRQQQ 312 (414)
T ss_pred CC------ccccHHHHHHHHHHHHHhCcccCcccEEEEEEChHHHHHHHHHHhCCcCceEEEEECCccchhhcchhhhhh
Confidence 10 1111222335788999999899999999999999999999999988999999999988875221110 00
Q ss_pred CCC----ccccccCCC-CCHH-HHHHHHhcCccc--CCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHH
Q 004766 606 IGH----AWVSDFGCS-EEEE-EFYWLIKYSPLH--NVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQY 677 (732)
Q Consensus 606 ~~~----~~~~~~g~p-~~~~-~~~~~~~~sp~~--~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~ 677 (732)
... .+...+|.+ .+.+ ....+..++... .+.. .+..|+|++||.+|.+||+.++..+.+...
T Consensus 313 ~p~~~~~~la~~lg~~~~~~~~l~~~l~~~sl~~~~~l~~---------~i~~PvLiI~G~~D~ivP~~~a~~l~~~~~- 382 (414)
T PRK05077 313 VPEMYLDVLASRLGMHDASDEALRVELNRYSLKVQGLLGR---------RCPTPMLSGYWKNDPFSPEEDSRLIASSSA- 382 (414)
T ss_pred chHHHHHHHHHHhCCCCCChHHHHHHhhhccchhhhhhcc---------CCCCcEEEEecCCCCCCCHHHHHHHHHhCC-
Confidence 000 011123432 2222 222333333211 1111 378899999999999999999987765433
Q ss_pred hhcCCCCCCCCCCCEEEEEeCCCCCCCCCchHHHHHHHHHHHHHHHHHh
Q 004766 678 VLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKML 726 (732)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l 726 (732)
...+.++++. |.+.. ..+....+.+||.++|
T Consensus 383 -------------~~~l~~i~~~-~~~e~----~~~~~~~i~~wL~~~l 413 (414)
T PRK05077 383 -------------DGKLLEIPFK-PVYRN----FDKALQEISDWLEDRL 413 (414)
T ss_pred -------------CCeEEEccCC-CccCC----HHHHHHHHHHHHHHHh
Confidence 2467778876 33322 2356677889998876
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.5e-17 Score=180.21 Aligned_cols=262 Identities=16% Similarity=0.142 Sum_probs=173.5
Q ss_pred CCEEEEEEEcC--CCCeeEEEEEeCCCCCceEEeCCCCcCCCCCEEEEeEEECCCCcEEEEEEeccCCceEEEEEEECCC
Q 004766 90 GNKYFYFHNTG--LQPQSVLYVQDSLDAKAKVLLDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIED 167 (732)
Q Consensus 90 g~~~~~~~~~~--~~~~~~l~~r~~~~~~~~~l~D~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~ 167 (732)
..++.|..... ....+.||..+..++..+.++.... .+..++|||||++|||+....+. .+||++|+++
T Consensus 162 ~~~ia~v~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~-------~~~~p~wSpDG~~la~~s~~~~~--~~l~~~~l~~ 232 (430)
T PRK00178 162 STRILYVTAERFSVNTRYTLQRSDYDGARAVTLLQSRE-------PILSPRWSPDGKRIAYVSFEQKR--PRIFVQNLDT 232 (430)
T ss_pred eeeEEEEEeeCCCCCcceEEEEECCCCCCceEEecCCC-------ceeeeeECCCCCEEEEEEcCCCC--CEEEEEECCC
Confidence 34566665322 2345678887765455555554322 24588999999999999866543 6899999999
Q ss_pred CceecccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEE
Q 004766 168 QIVEADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFS 247 (732)
Q Consensus 168 g~~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~ 247 (732)
|+....+........++|||||+.|+|+.... ...+||++++.++... .+.. .......
T Consensus 233 g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~----------------g~~~Iy~~d~~~~~~~--~lt~---~~~~~~~ 291 (430)
T PRK00178 233 GRREQITNFEGLNGAPAWSPDGSKLAFVLSKD----------------GNPEIYVMDLASRQLS--RVTN---HPAIDTE 291 (430)
T ss_pred CCEEEccCCCCCcCCeEECCCCCEEEEEEccC----------------CCceEEEEECCCCCeE--Eccc---CCCCcCC
Confidence 87543322111225799999999999986432 2357999999876432 2322 1223346
Q ss_pred eEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCCCCcEEeeecc-cceEEEEEecCCeEEEEeCCCCCC
Q 004766 248 GHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGF-DAQYEVIANDDTVFTFLTNKDAPK 326 (732)
Q Consensus 248 ~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~s~dg~~l~~~s~~~~~~ 326 (732)
+.|||||++|+|.+.+.. ...||++++.++. .+.++... ......|+|||+.++|.+..++ .
T Consensus 292 ~~~spDg~~i~f~s~~~g--~~~iy~~d~~~g~--------------~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~-~ 354 (430)
T PRK00178 292 PFWGKDGRTLYFTSDRGG--KPQIYKVNVNGGR--------------AERVTFVGNYNARPRLSADGKTLVMVHRQDG-N 354 (430)
T ss_pred eEECCCCCEEEEEECCCC--CceEEEEECCCCC--------------EEEeecCCCCccceEECCCCCEEEEEEccCC-c
Confidence 899999999999875543 4679999987743 23333221 1122469999999999876543 6
Q ss_pred ceEEEEeCCCCCCceEeccCCCCCceeEEEEecC-CEEEEEEecCCeeEEEEEeCCCCceeeecccccceeeEeeccc
Q 004766 327 YKIIRVDLKEPNDWFEVIPEAERDVLESATAVNL-NQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARR 403 (732)
Q Consensus 327 ~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~-~~l~~~~~~~g~~~l~~~d~~~g~~~~~l~~~~g~v~~~~~s~ 403 (732)
++|+.+|++++. .+.|.... .-....|+++ +.+++....++...|++++++ |...+.++.+.+.+..+++++
T Consensus 355 ~~l~~~dl~tg~-~~~lt~~~---~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~-g~~~~~l~~~~g~~~~p~ws~ 427 (430)
T PRK00178 355 FHVAAQDLQRGS-VRILTDTS---LDESPSVAPNGTMLIYATRQQGRGVLMLVSIN-GRVRLPLPTAQGEVREPSWSP 427 (430)
T ss_pred eEEEEEECCCCC-EEEccCCC---CCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEECcCCCCCcCCCccCC
Confidence 789999998876 45554322 1234577765 567777777888899999996 655456765556665555543
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.1e-17 Score=178.92 Aligned_cols=262 Identities=16% Similarity=0.113 Sum_probs=173.1
Q ss_pred CCEEEEEEEcCC--CCeeEEEEEeCCCCCceEEeCCCCcCCCCCEEEEeEEECCCCcEEEEEEeccCCceEEEEEEECCC
Q 004766 90 GNKYFYFHNTGL--QPQSVLYVQDSLDAKAKVLLDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIED 167 (732)
Q Consensus 90 g~~~~~~~~~~~--~~~~~l~~r~~~~~~~~~l~D~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~ 167 (732)
+.+++|....+. .....||+.+..+...+.|+..+. .+..++|||||++|||+....+. .+|+++|+.+
T Consensus 167 ~~~ia~v~~~~~~~~~~~~l~i~D~~g~~~~~lt~~~~-------~v~~p~wSpDg~~la~~s~~~~~--~~l~~~dl~~ 237 (433)
T PRK04922 167 WTRIAYVTVSGAGGAMRYALQVADSDGYNPQTILRSAE-------PILSPAWSPDGKKLAYVSFERGR--SAIYVQDLAT 237 (433)
T ss_pred cceEEEEEEeCCCCCceEEEEEECCCCCCceEeecCCC-------ccccccCCCCCCEEEEEecCCCC--cEEEEEECCC
Confidence 456777755332 234678888764445566654322 24588999999999999765553 6899999999
Q ss_pred CceecccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEE
Q 004766 168 QIVEADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFS 247 (732)
Q Consensus 168 g~~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~ 247 (732)
|+....+........++|||||+.|+|+.... ...+||++++.++... .+.. .......
T Consensus 238 g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~----------------g~~~Iy~~d~~~g~~~--~lt~---~~~~~~~ 296 (433)
T PRK04922 238 GQRELVASFRGINGAPSFSPDGRRLALTLSRD----------------GNPEIYVMDLGSRQLT--RLTN---HFGIDTE 296 (433)
T ss_pred CCEEEeccCCCCccCceECCCCCEEEEEEeCC----------------CCceEEEEECCCCCeE--ECcc---CCCCccc
Confidence 88543321111235789999999999986432 2357999999876432 2222 1223347
Q ss_pred eEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCCCCcEEeeec-ccceEEEEEecCCeEEEEeCCCCCC
Q 004766 248 GHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDG-FDAQYEVIANDDTVFTFLTNKDAPK 326 (732)
Q Consensus 248 ~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~s~dg~~l~~~s~~~~~~ 326 (732)
++|||||++|++.+.+.. ..+||++++.++. .+.++.. .......|+|||+.|++.+.. ...
T Consensus 297 ~~~spDG~~l~f~sd~~g--~~~iy~~dl~~g~--------------~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~-~~~ 359 (433)
T PRK04922 297 PTWAPDGKSIYFTSDRGG--RPQIYRVAASGGS--------------AERLTFQGNYNARASVSPDGKKIAMVHGS-GGQ 359 (433)
T ss_pred eEECCCCCEEEEEECCCC--CceEEEEECCCCC--------------eEEeecCCCCccCEEECCCCCEEEEEECC-CCc
Confidence 899999999999876543 4679999987643 2334322 111234699999999998764 345
Q ss_pred ceEEEEeCCCCCCceEeccCCCCCceeEEEEecC-CEEEEEEecCCeeEEEEEeCCCCceeeecccccceeeEeeccc
Q 004766 327 YKIIRVDLKEPNDWFEVIPEAERDVLESATAVNL-NQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARR 403 (732)
Q Consensus 327 ~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~-~~l~~~~~~~g~~~l~~~d~~~g~~~~~l~~~~g~v~~~~~s~ 403 (732)
++|+.+|+.++. .+.|.... ....+.|+++ ..+++.....+...|++++++ |...++++.+.+.+..++++|
T Consensus 360 ~~I~v~d~~~g~-~~~Lt~~~---~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~-g~~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 360 YRIAVMDLSTGS-VRTLTPGS---LDESPSFAPNGSMVLYATREGGRGVLAAVSTD-GRVRQRLVSADGEVREPAWSP 432 (433)
T ss_pred eeEEEEECCCCC-eEECCCCC---CCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEEcccCCCCCCCCccCC
Confidence 689999998876 45554332 2345678875 457777777778899999996 555467765555555555543
|
|
| >PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway | Back alignment and domain information |
|---|
Probab=99.79 E-value=7.3e-19 Score=173.50 Aligned_cols=205 Identities=17% Similarity=0.177 Sum_probs=141.4
Q ss_pred EEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCC--Cch---h--HHhcccccC
Q 004766 465 IPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGE--YGE---E--WHKGGALAK 537 (732)
Q Consensus 465 i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~--~g~---~--~~~~~~~~~ 537 (732)
+.+++..|++. ++.|.||++|+.+|.. .+...+...|+++||.|++||+-++.. ... . .........
T Consensus 1 ~~ay~~~P~~~---~~~~~Vvv~~d~~G~~---~~~~~~ad~lA~~Gy~v~~pD~f~~~~~~~~~~~~~~~~~~~~~~~~ 74 (218)
T PF01738_consen 1 IDAYVARPEGG---GPRPAVVVIHDIFGLN---PNIRDLADRLAEEGYVVLAPDLFGGRGAPPSDPEEAFAAMRELFAPR 74 (218)
T ss_dssp EEEEEEEETTS---SSEEEEEEE-BTTBS----HHHHHHHHHHHHTT-EEEEE-CCCCTS--CCCHHCHHHHHHHCHHHS
T ss_pred CeEEEEeCCCC---CCCCEEEEEcCCCCCc---hHHHHHHHHHHhcCCCEEecccccCCCCCccchhhHHHHHHHHHhhh
Confidence 56888999873 6899999999999875 333345666777999999999866554 111 1 111000111
Q ss_pred CccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCcccccccccCCCCCccccccCCC
Q 004766 538 KQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHAWVSDFGCS 617 (732)
Q Consensus 538 ~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~~~~~~~g~p 617 (732)
......|+.+++++|.+++.++++||+++|+|+||.++..++.+. +.++|+|+..|.. . +
T Consensus 75 ~~~~~~~~~aa~~~l~~~~~~~~~kig~vGfc~GG~~a~~~a~~~-~~~~a~v~~yg~~--------~-----------~ 134 (218)
T PF01738_consen 75 PEQVAADLQAAVDYLRAQPEVDPGKIGVVGFCWGGKLALLLAARD-PRVDAAVSFYGGS--------P-----------P 134 (218)
T ss_dssp HHHHHHHHHHHHHHHHCTTTCEEEEEEEEEETHHHHHHHHHHCCT-TTSSEEEEES-SS--------S-----------G
T ss_pred HHHHHHHHHHHHHHHHhccccCCCcEEEEEEecchHHhhhhhhhc-cccceEEEEcCCC--------C-----------C
Confidence 234578899999999999878899999999999999999998875 6899999988800 0 0
Q ss_pred CCHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEe
Q 004766 618 EEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIE 697 (732)
Q Consensus 618 ~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 697 (732)
.. +..... .+.+|+|+.+|.+|+.++..+..++.++|+++ +.++++++|
T Consensus 135 ~~-----------~~~~~~----------~~~~P~l~~~g~~D~~~~~~~~~~~~~~l~~~----------~~~~~~~~y 183 (218)
T PF01738_consen 135 PP-----------PLEDAP----------KIKAPVLILFGENDPFFPPEEVEALEEALKAA----------GVDVEVHVY 183 (218)
T ss_dssp GG-----------HHHHGG----------G--S-EEEEEETT-TTS-HHHHHHHHHHHHCT----------TTTEEEEEE
T ss_pred Cc-----------chhhhc----------ccCCCEeecCccCCCCCChHHHHHHHHHHHhc----------CCcEEEEEC
Confidence 00 111111 26789999999999999999999999999887 899999999
Q ss_pred CCCCCCCCCch------HHHHHHHHHHHHHHHHHh
Q 004766 698 RKAGHGVGLPT------QKMIDEAADRYGFMAKML 726 (732)
Q Consensus 698 ~~~gH~~~~~~------~~~~~~~~~~~~fl~~~l 726 (732)
++++|+|..+. ....+.++++.+||.++|
T Consensus 184 ~ga~HgF~~~~~~~~~~~aa~~a~~~~~~ff~~~L 218 (218)
T PF01738_consen 184 PGAGHGFANPSRPPYDPAAAEDAWQRTLAFFKRHL 218 (218)
T ss_dssp TT--TTTTSTTSTT--HHHHHHHHHHHHHHHCC--
T ss_pred CCCcccccCCCCcccCHHHHHHHHHHHHHHHHhcC
Confidence 99999996432 224567788899998876
|
Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A. |
| >TIGR01840 esterase_phb esterase, PHB depolymerase family | Back alignment and domain information |
|---|
Probab=99.79 E-value=2e-18 Score=169.24 Aligned_cols=194 Identities=13% Similarity=0.112 Sum_probs=132.3
Q ss_pred EEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchh--HHhcccccCCccHHHH
Q 004766 467 MFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEE--WHKGGALAKKQNCFDD 544 (732)
Q Consensus 467 ~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~--~~~~~~~~~~~~~~~D 544 (732)
++++.|++. +++.|+||++||+.+..........+..++++.||+|++||+||++..+.. |..............|
T Consensus 1 ~~ly~P~~~--~~~~P~vv~lHG~~~~~~~~~~~~~~~~~a~~~g~~Vv~Pd~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (212)
T TIGR01840 1 MYVYVPAGL--TGPRALVLALHGCGQTASAYVIDWGWKAAADRYGFVLVAPEQTSYNSSNNCWDWFFTHHRARGTGEVES 78 (212)
T ss_pred CEEEcCCCC--CCCCCEEEEeCCCCCCHHHHhhhcChHHHHHhCCeEEEecCCcCccccCCCCCCCCccccCCCCccHHH
Confidence 467888874 468999999999876543322112245667778999999999998755443 3332222223345788
Q ss_pred HHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCcccccccccCCCCCccccccCCCCCHHHHH
Q 004766 545 FISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHAWVSDFGCSEEEEEFY 624 (732)
Q Consensus 545 ~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~~~~~~~g~p~~~~~~~ 624 (732)
+...++++.++..+|++||+|.|+|+||+++..++.++|++|+++++.++..-........ . ......+.....+.
T Consensus 79 ~~~~i~~~~~~~~id~~~i~l~G~S~Gg~~a~~~a~~~p~~~~~~~~~~g~~~~~~~~~~~---~-~~~~~~~~~~~~~~ 154 (212)
T TIGR01840 79 LHQLIDAVKANYSIDPNRVYVTGLSAGGGMTAVLGCTYPDVFAGGASNAGLPYGEASSSIS---A-TPQMCTAATAASVC 154 (212)
T ss_pred HHHHHHHHHHhcCcChhheEEEEECHHHHHHHHHHHhCchhheEEEeecCCcccccccchh---h-HhhcCCCCCHHHHH
Confidence 8899999998877899999999999999999999999999999998877653211100000 0 01111222222222
Q ss_pred HH-HhcCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHh
Q 004766 625 WL-IKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYV 678 (732)
Q Consensus 625 ~~-~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~ 678 (732)
.+ .... .... ...||++|+||.+|..||+..+.+++++|++.
T Consensus 155 ~~~~~~~--~~~~----------~~~p~~~i~hG~~D~vVp~~~~~~~~~~l~~~ 197 (212)
T TIGR01840 155 RLVRGMQ--SEYN----------GPTPIMSVVHGDADYTVLPGNADEIRDAMLKV 197 (212)
T ss_pred HHHhccC--Cccc----------CCCCeEEEEEcCCCceeCcchHHHHHHHHHHh
Confidence 22 2211 1111 25788999999999999999999999999986
|
This model describes a subfamily among lipases of the ab-hydrolase family. This subfamily includes bacterial depolymerases for poly(3-hydroxybutyrate) (PHB) and related polyhydroxyalkanoates (PHA), as well as acetyl xylan esterases, feruloyl esterases, and others from fungi. |
| >COG0412 Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.2e-17 Score=164.49 Aligned_cols=216 Identities=18% Similarity=0.186 Sum_probs=164.4
Q ss_pred EEEEEEccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCC----c-
Q 004766 452 HQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEY----G- 526 (732)
Q Consensus 452 ~~~~~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~----g- 526 (732)
+.+.++++| .++++++.+|+.. ++.|.||.+|+.+|... +.......|+++||+|++||+-+..+. +
T Consensus 3 ~~v~~~~~~--~~~~~~~a~P~~~---~~~P~VIv~hei~Gl~~---~i~~~a~rlA~~Gy~v~~Pdl~~~~~~~~~~~~ 74 (236)
T COG0412 3 TDVTIPAPD--GELPAYLARPAGA---GGFPGVIVLHEIFGLNP---HIRDVARRLAKAGYVVLAPDLYGRQGDPTDIED 74 (236)
T ss_pred cceEeeCCC--ceEeEEEecCCcC---CCCCEEEEEecccCCch---HHHHHHHHHHhCCcEEEechhhccCCCCCcccc
Confidence 346677755 5999999999874 44599999999999742 344456677779999999998542221 1
Q ss_pred -hhHHhcc--cccCCccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCccccccccc
Q 004766 527 -EEWHKGG--ALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHK 603 (732)
Q Consensus 527 -~~~~~~~--~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~ 603 (732)
......+ ..........|+.++++||..++.++++||+++|+|+||.+++.++.+.| .++|+|+..|..-.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~d~~a~~~~L~~~~~~~~~~ig~~GfC~GG~~a~~~a~~~~-~v~a~v~fyg~~~~----- 148 (236)
T COG0412 75 EPAELETGLVERVDPAEVLADIDAALDYLARQPQVDPKRIGVVGFCMGGGLALLAATRAP-EVKAAVAFYGGLIA----- 148 (236)
T ss_pred cHHHHhhhhhccCCHHHHHHHHHHHHHHHHhCCCCCCceEEEEEEcccHHHHHHhhcccC-CccEEEEecCCCCC-----
Confidence 1122211 11112467899999999999999899999999999999999999999876 79999987773210
Q ss_pred CCCCCccccccCCCCCHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhcCCC
Q 004766 604 FTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSL 683 (732)
Q Consensus 604 ~~~~~~~~~~~g~p~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~ 683 (732)
.. + .... +++.|+|+.+|..|..+|.....++.+++.++
T Consensus 149 -----~~------~---------------~~~~----------~~~~pvl~~~~~~D~~~p~~~~~~~~~~~~~~----- 187 (236)
T COG0412 149 -----DD------T---------------ADAP----------KIKVPVLLHLAGEDPYIPAADVDALAAALEDA----- 187 (236)
T ss_pred -----Cc------c---------------cccc----------cccCcEEEEecccCCCCChhHHHHHHHHHHhc-----
Confidence 00 0 0022 27889999999999999999999999999987
Q ss_pred CCCCCCCCEEEEEeCCCCCCCCCch---------HHHHHHHHHHHHHHHHHhC
Q 004766 684 ENSPQTNPIIGRIERKAGHGVGLPT---------QKMIDEAADRYGFMAKMLG 727 (732)
Q Consensus 684 ~~~~~~~~~~~~~~~~~gH~~~~~~---------~~~~~~~~~~~~fl~~~l~ 727 (732)
+..+.+.+|+++.|+|..+. ......++++++||.++++
T Consensus 188 -----~~~~~~~~y~ga~H~F~~~~~~~~~~y~~~aa~~a~~~~~~ff~~~~~ 235 (236)
T COG0412 188 -----GVKVDLEIYPGAGHGFANDRADYHPGYDAAAAEDAWQRVLAFFKRLLG 235 (236)
T ss_pred -----CCCeeEEEeCCCccccccCCCcccccCCHHHHHHHHHHHHHHHHHhcc
Confidence 77899999999999998542 2245677889999999886
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=6.7e-17 Score=176.52 Aligned_cols=245 Identities=12% Similarity=0.099 Sum_probs=170.2
Q ss_pred CcEEEEEEeccCCc--eEEEEEEECCCCceecccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCCcccEE
Q 004766 143 AKYLAYALSYSGSD--WATIKLMRIEDQIVEADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEF 220 (732)
Q Consensus 143 G~~la~~~~~~G~e--~~~i~v~dl~~g~~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~~~~~v 220 (732)
..+|||+...+|.+ ..+||++|.+++.....+........++|||||+.|+|++... ...+|
T Consensus 165 ~~~iafv~~~~~~~~~~~~l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~----------------g~~~i 228 (435)
T PRK05137 165 DTRIVYVAESGPKNKRIKRLAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYAN----------------GRPRV 228 (435)
T ss_pred CCeEEEEEeeCCCCCcceEEEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecC----------------CCCEE
Confidence 56899998876643 5799999998776443333222347899999999999997533 23579
Q ss_pred EEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCCCCcEEeee
Q 004766 221 YYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLID 300 (732)
Q Consensus 221 ~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l~~ 300 (732)
|++++.++... .+... ++....+.|||||+.|++..+... ..+||++|++++. .+.++.
T Consensus 229 ~~~dl~~g~~~--~l~~~---~g~~~~~~~SPDG~~la~~~~~~g--~~~Iy~~d~~~~~--------------~~~Lt~ 287 (435)
T PRK05137 229 YLLDLETGQRE--LVGNF---PGMTFAPRFSPDGRKVVMSLSQGG--NTDIYTMDLRSGT--------------TTRLTD 287 (435)
T ss_pred EEEECCCCcEE--EeecC---CCcccCcEECCCCCEEEEEEecCC--CceEEEEECCCCc--------------eEEccC
Confidence 99999876532 23222 223457899999999998876544 5789999998753 344544
Q ss_pred cccce-EEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecC-CEEEEEEecCCeeEEEEE
Q 004766 301 GFDAQ-YEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNL-NQMIVSYLSDVKYVLQIR 378 (732)
Q Consensus 301 ~~~~~-~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~-~~l~~~~~~~g~~~l~~~ 378 (732)
..... ...|+|||+.|+|.+++.+ ..+||++|++++. .+.++... .....+.|+++ +.|++.....+..+|+++
T Consensus 288 ~~~~~~~~~~spDG~~i~f~s~~~g-~~~Iy~~d~~g~~-~~~lt~~~--~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~ 363 (435)
T PRK05137 288 SPAIDTSPSYSPDGSQIVFESDRSG-SPQLYVMNADGSN-PRRISFGG--GRYSTPVWSPRGDLIAFTKQGGGQFSIGVM 363 (435)
T ss_pred CCCccCceeEcCCCCEEEEEECCCC-CCeEEEEECCCCC-eEEeecCC--CcccCeEECCCCCEEEEEEcCCCceEEEEE
Confidence 32222 2469999999999987654 4689999998775 45665432 23455778875 456666665666789999
Q ss_pred eCCCCceeeecccccceeeEeecccCCcEEEEEEecCCCC--ceEEEEECCCCC
Q 004766 379 DLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIP--GIVYQCNLKTET 430 (732)
Q Consensus 379 d~~~g~~~~~l~~~~g~v~~~~~s~d~~~l~~~~ss~~~p--~~~y~~d~~~~~ 430 (732)
+++++.. +.++.. ..+..++++|||+.++|+....... ..+|.+|+.+++
T Consensus 364 d~~~~~~-~~lt~~-~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~ 415 (435)
T PRK05137 364 KPDGSGE-RILTSG-FLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRN 415 (435)
T ss_pred ECCCCce-EeccCC-CCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCc
Confidence 9874443 555532 3455678899999988877654443 589999997764
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.3e-16 Score=172.38 Aligned_cols=260 Identities=12% Similarity=0.070 Sum_probs=172.6
Q ss_pred EeEEECCCCcEEEEEEeccCCc----eEEEEEEECCCCceecccccceeeeeEEEEeCCcE--EEEEEecCCCCCCCCCC
Q 004766 135 IKVSVSEDAKYLAYALSYSGSD----WATIKLMRIEDQIVEADALSWFKFSSIAWTHDSKG--FFYSRYPAPKEGKDMDA 208 (732)
Q Consensus 135 ~~~~~SPDG~~la~~~~~~G~e----~~~i~v~dl~~g~~~~~~~~~~~~~~~~WspDg~~--l~y~~~~~~~~~~~~~~ 208 (732)
+...++ +++|||+....+.+ .+.||++|.+++...+.+........++|||||+. |+|++...
T Consensus 140 g~~g~~--~~~iayv~~~~~~~~~~~~~~l~~~d~dG~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~--------- 208 (428)
T PRK01029 140 GVPGIS--SGKIIFSLSTTNSDTELKQGELWSVDYDGQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKL--------- 208 (428)
T ss_pred CCCccc--cCEEEEEEeeCCcccccccceEEEEcCCCCCceEcccCCCCcccceEccCCCceEEEEEEccC---------
Confidence 344455 89999998765422 46999999998876554433323368999999987 55676532
Q ss_pred CCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEE--eCCCCCCCcccc
Q 004766 209 GTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYC--DLSALPEGLEGF 286 (732)
Q Consensus 209 ~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~--d~~~~~~~~~~~ 286 (732)
...+||+.++.++... .+...+ +....+.|||||++|++.+.... ..++|+. +++++..
T Consensus 209 -------g~~~I~~~~l~~g~~~--~lt~~~---g~~~~p~wSPDG~~Laf~s~~~g--~~di~~~~~~~~~g~~----- 269 (428)
T PRK01029 209 -------GVPKIFLGSLENPAGK--KILALQ---GNQLMPTFSPRKKLLAFISDRYG--NPDLFIQSFSLETGAI----- 269 (428)
T ss_pred -------CCceEEEEECCCCCce--EeecCC---CCccceEECCCCCEEEEEECCCC--CcceeEEEeecccCCC-----
Confidence 2357999999887544 333222 22346899999999999875433 3456664 5544211
Q ss_pred cccCCCCCcEEeeecc-cc-eEEEEEecCCeEEEEeCCCCCCceEEEEeCCCC-CCceEeccCCCCCceeEEEEecC-CE
Q 004766 287 KKRDGLLPFVKLIDGF-DA-QYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEP-NDWFEVIPEAERDVLESATAVNL-NQ 362 (732)
Q Consensus 287 ~~~~~~~~~~~l~~~~-~~-~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~-~~~~~l~~~~~~~~l~~~~~~~~-~~ 362 (732)
...+.++.+. .. ....|+|||+.|+|.+++++ ..+||.+++.+. ...+.+.... .....+.|++| +.
T Consensus 270 ------g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g-~~~ly~~~~~~~g~~~~~lt~~~--~~~~~p~wSPDG~~ 340 (428)
T PRK01029 270 ------GKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDG-RPRIYIMQIDPEGQSPRLLTKKY--RNSSCPAWSPDGKK 340 (428)
T ss_pred ------CcceEeecCCCCCcCCeEECCCCCEEEEEECCCC-CceEEEEECcccccceEEeccCC--CCccceeECCCCCE
Confidence 1134455432 11 23469999999999987654 457999988532 2234444332 33456788876 55
Q ss_pred EEEEEecCCeeEEEEEeCCCCceeeecccccceeeEeecccCCcEEEEEEecCCCCceEEEEECCCCCCceEEEE
Q 004766 363 MIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTETPEMKIFR 437 (732)
Q Consensus 363 l~~~~~~~g~~~l~~~d~~~g~~~~~l~~~~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~~~~~~~l~ 437 (732)
|++....++..+|+++|+++|+. +.++...+.+..+.+++||+.++|+... .....+|.+|+.+++ .+.+.
T Consensus 341 Laf~~~~~g~~~I~v~dl~~g~~-~~Lt~~~~~~~~p~wSpDG~~L~f~~~~-~g~~~L~~vdl~~g~--~~~Lt 411 (428)
T PRK01029 341 IAFCSVIKGVRQICVYDLATGRD-YQLTTSPENKESPSWAIDSLHLVYSAGN-SNESELYLISLITKK--TRKIV 411 (428)
T ss_pred EEEEEcCCCCcEEEEEECCCCCe-EEccCCCCCccceEECCCCCEEEEEECC-CCCceEEEEECCCCC--EEEee
Confidence 77777777778999999987775 6676444455667889999988877654 345789999998874 44443
|
|
| >PLN02385 hydrolase; alpha/beta fold family protein | Back alignment and domain information |
|---|
Probab=99.75 E-value=8.8e-17 Score=170.70 Aligned_cols=248 Identities=13% Similarity=0.057 Sum_probs=154.3
Q ss_pred ceEEEEEEEccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchh
Q 004766 449 FHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEE 528 (732)
Q Consensus 449 ~~~~~~~~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~ 528 (732)
+..++..+.+.|| .+|.+....|++ ..+.|+||++||..+.. . .|...+...|+++||.|+++|+||.|.....
T Consensus 59 ~~~~~~~~~~~~g-~~l~~~~~~p~~---~~~~~~iv~lHG~~~~~-~-~~~~~~~~~l~~~g~~v~~~D~~G~G~S~~~ 132 (349)
T PLN02385 59 IKTEESYEVNSRG-VEIFSKSWLPEN---SRPKAAVCFCHGYGDTC-T-FFFEGIARKIASSGYGVFAMDYPGFGLSEGL 132 (349)
T ss_pred cceeeeeEEcCCC-CEEEEEEEecCC---CCCCeEEEEECCCCCcc-c-hHHHHHHHHHHhCCCEEEEecCCCCCCCCCC
Confidence 3334445556799 999998888864 24678999999975542 1 2222344556658999999999998864321
Q ss_pred HHhcccccCCccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCccccccccc-----
Q 004766 529 WHKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHK----- 603 (732)
Q Consensus 529 ~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~----- 603 (732)
.+....-..-.+|+.+.++++..+...++.++.++|+||||++++.++.++|++++++|+..|.........
T Consensus 133 ---~~~~~~~~~~~~dv~~~l~~l~~~~~~~~~~~~LvGhSmGG~val~~a~~~p~~v~glVLi~p~~~~~~~~~~~~~~ 209 (349)
T PLN02385 133 ---HGYIPSFDDLVDDVIEHYSKIKGNPEFRGLPSFLFGQSMGGAVALKVHLKQPNAWDGAILVAPMCKIADDVVPPPLV 209 (349)
T ss_pred ---CCCcCCHHHHHHHHHHHHHHHHhccccCCCCEEEEEeccchHHHHHHHHhCcchhhheeEecccccccccccCchHH
Confidence 000001122355666666666544333456899999999999999999999999999999888653211000
Q ss_pred ----------CCC----CCccccc--cCCCCC-----------------HHHHHHHHhcCcc-cCCCCCCCCCCCCCCCC
Q 004766 604 ----------FTI----GHAWVSD--FGCSEE-----------------EEEFYWLIKYSPL-HNVRRPWEQNPDKPFQY 649 (732)
Q Consensus 604 ----------~~~----~~~~~~~--~g~p~~-----------------~~~~~~~~~~sp~-~~~~~~~~~~~~~~~~~ 649 (732)
... ....... +.++.. ....+.+.....+ ..+. .+.
T Consensus 210 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~----------~i~ 279 (349)
T PLN02385 210 LQILILLANLLPKAKLVPQKDLAELAFRDLKKRKMAEYNVIAYKDKPRLRTAVELLRTTQEIEMQLE----------EVS 279 (349)
T ss_pred HHHHHHHHHHCCCceecCCCccccccccCHHHHHHhhcCcceeCCCcchHHHHHHHHHHHHHHHhcc----------cCC
Confidence 000 0000000 111000 0000111110000 1122 378
Q ss_pred CeEEEEeeCCCCCCCchHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeCCCCCCCCC--chHHHHHHHHHHHHHHHHHhC
Q 004766 650 PSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGL--PTQKMIDEAADRYGFMAKMLG 727 (732)
Q Consensus 650 ~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~--~~~~~~~~~~~~~~fl~~~l~ 727 (732)
.|+||+||.+|..||+..+.++++++.. ....+++++++||.... +.......+..+.+||.+++.
T Consensus 280 ~P~Lii~G~~D~vv~~~~~~~l~~~~~~------------~~~~l~~i~~~gH~l~~e~p~~~~~~v~~~i~~wL~~~~~ 347 (349)
T PLN02385 280 LPLLILHGEADKVTDPSVSKFLYEKASS------------SDKKLKLYEDAYHSILEGEPDEMIFQVLDDIISWLDSHST 347 (349)
T ss_pred CCEEEEEeCCCCccChHHHHHHHHHcCC------------CCceEEEeCCCeeecccCCChhhHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999998887652 23578889999999763 322234577889999998864
|
|
| >PHA02857 monoglyceride lipase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.1e-16 Score=164.56 Aligned_cols=232 Identities=12% Similarity=0.053 Sum_probs=151.9
Q ss_pred EEccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccc
Q 004766 456 VPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGAL 535 (732)
Q Consensus 456 ~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~ 535 (732)
+.+.|| .++++.++.|.+ .+.|+|+++||..+.+ ..|.. +...|+++||.|+++|.||.|..... ....
T Consensus 5 ~~~~~g-~~l~~~~~~~~~----~~~~~v~llHG~~~~~--~~~~~-~~~~l~~~g~~via~D~~G~G~S~~~---~~~~ 73 (276)
T PHA02857 5 MFNLDN-DYIYCKYWKPIT----YPKALVFISHGAGEHS--GRYEE-LAENISSLGILVFSHDHIGHGRSNGE---KMMI 73 (276)
T ss_pred eecCCC-CEEEEEeccCCC----CCCEEEEEeCCCcccc--chHHH-HHHHHHhCCCEEEEccCCCCCCCCCc---cCCc
Confidence 345699 999999998852 4568999999976543 34443 45556658999999999999864321 0001
Q ss_pred cCCccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCccccccc--------------
Q 004766 536 AKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRY-------------- 601 (732)
Q Consensus 536 ~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~-------------- 601 (732)
..-...++|+...++++.+. ....++.++|+|+||+++..++.++|++++++|+.+|..+....
T Consensus 74 ~~~~~~~~d~~~~l~~~~~~--~~~~~~~lvG~S~GG~ia~~~a~~~p~~i~~lil~~p~~~~~~~~~~~~~~~~~~~~~ 151 (276)
T PHA02857 74 DDFGVYVRDVVQHVVTIKST--YPGVPVFLLGHSMGATISILAAYKNPNLFTAMILMSPLVNAEAVPRLNLLAAKLMGIF 151 (276)
T ss_pred CCHHHHHHHHHHHHHHHHhh--CCCCCEEEEEcCchHHHHHHHHHhCccccceEEEeccccccccccHHHHHHHHHHHHh
Confidence 11122367777888777654 22367999999999999999999999999999999997653110
Q ss_pred ccCCCCCccccccCCCCCHHHHHHHHhcCcc----------------------cCCCCCCCCCCCCCCCCCeEEEEeeCC
Q 004766 602 HKFTIGHAWVSDFGCSEEEEEFYWLIKYSPL----------------------HNVRRPWEQNPDKPFQYPSTLLLTADH 659 (732)
Q Consensus 602 ~~~~~~~~~~~~~g~p~~~~~~~~~~~~sp~----------------------~~~~~~~~~~~~~~~~~~p~Li~~g~~ 659 (732)
........+...+-.....+.. ...++|+ ..+. .+..|+|+++|++
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----------~i~~Pvliv~G~~ 219 (276)
T PHA02857 152 YPNKIVGKLCPESVSRDMDEVY--KYQYDPLVNHEKIKAGFASQVLKATNKVRKIIP----------KIKTPILILQGTN 219 (276)
T ss_pred CCCCccCCCCHhhccCCHHHHH--HHhcCCCccCCCccHHHHHHHHHHHHHHHHhcc----------cCCCCEEEEecCC
Confidence 0000000000000000000100 0111221 1122 3789999999999
Q ss_pred CCCCCchHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeCCCCCCCCCchH-HHHHHHHHHHHHHHHH
Q 004766 660 DDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQ-KMIDEAADRYGFMAKM 725 (732)
Q Consensus 660 D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~-~~~~~~~~~~~fl~~~ 725 (732)
|..||+..+.++.+++. . .+.+.+++++||....... .+.+.++++.+||.++
T Consensus 220 D~i~~~~~~~~l~~~~~------------~-~~~~~~~~~~gH~~~~e~~~~~~~~~~~~~~~l~~~ 273 (276)
T PHA02857 220 NEISDVSGAYYFMQHAN------------C-NREIKIYEGAKHHLHKETDEVKKSVMKEIETWIFNR 273 (276)
T ss_pred CCcCChHHHHHHHHHcc------------C-CceEEEeCCCcccccCCchhHHHHHHHHHHHHHHHh
Confidence 99999999988877653 1 3688999999998875432 2467888999999886
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=6.4e-16 Score=165.77 Aligned_cols=239 Identities=13% Similarity=0.132 Sum_probs=165.6
Q ss_pred cEEEEEEeccCCceEEEEEEECCCCceecccccceeeeeEEEEeCCcE-EEEEEecCCCCCCCCCCCCcccCCcccEEEE
Q 004766 144 KYLAYALSYSGSDWATIKLMRIEDQIVEADALSWFKFSSIAWTHDSKG-FFYSRYPAPKEGKDMDAGTETDSNLYHEFYY 222 (732)
Q Consensus 144 ~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~~~~~~~~~~WspDg~~-l~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 222 (732)
.++||.+...|...++|++.|.++......+..+ ....+.|||||++ ++|++... +..+||+
T Consensus 155 ~r~~~v~~~~~~~~~~l~~~d~dg~~~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~----------------~~~~Iyv 217 (419)
T PRK04043 155 KRKVVFSKYTGPKKSNIVLADYTLTYQKVIVKGG-LNIFPKWANKEQTAFYYTSYGE----------------RKPTLYK 217 (419)
T ss_pred eeEEEEEEccCCCcceEEEECCCCCceeEEccCC-CeEeEEECCCCCcEEEEEEccC----------------CCCEEEE
Confidence 5778887655544589999999877644333333 2368999999996 77776432 2348999
Q ss_pred EECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCCCCcEEeeecc
Q 004766 223 HFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGF 302 (732)
Q Consensus 223 ~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~ 302 (732)
+++.+++.+ .+... ++....+.|||||+.|++...... ..+||+++++++. .++++...
T Consensus 218 ~dl~tg~~~--~lt~~---~g~~~~~~~SPDG~~la~~~~~~g--~~~Iy~~dl~~g~--------------~~~LT~~~ 276 (419)
T PRK04043 218 YNLYTGKKE--KIASS---QGMLVVSDVSKDGSKLLLTMAPKG--QPDIYLYDTNTKT--------------LTQITNYP 276 (419)
T ss_pred EECCCCcEE--EEecC---CCcEEeeEECCCCCEEEEEEccCC--CcEEEEEECCCCc--------------EEEcccCC
Confidence 999887543 44432 223446889999999999886544 6789999998753 44555433
Q ss_pred c-ceEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecC-CEEEEEEecC------CeeE
Q 004766 303 D-AQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNL-NQMIVSYLSD------VKYV 374 (732)
Q Consensus 303 ~-~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~-~~l~~~~~~~------g~~~ 374 (732)
. .....|+|||++|+|.+++.+ ..+||++|+++++ .+.++... .. ...|+++ +.+++..... +..+
T Consensus 277 ~~d~~p~~SPDG~~I~F~Sdr~g-~~~Iy~~dl~~g~-~~rlt~~g-~~---~~~~SPDG~~Ia~~~~~~~~~~~~~~~~ 350 (419)
T PRK04043 277 GIDVNGNFVEDDKRIVFVSDRLG-YPNIFMKKLNSGS-VEQVVFHG-KN---NSSVSTYKNYIVYSSRETNNEFGKNTFN 350 (419)
T ss_pred CccCccEECCCCCEEEEEECCCC-CceEEEEECCCCC-eEeCccCC-Cc---CceECCCCCEEEEEEcCCCcccCCCCcE
Confidence 2 123469999999999998754 5689999999887 45555433 12 2467765 5576666554 3368
Q ss_pred EEEEeCCCCceeeecccccceeeEeecccCCcEEEEEEecCCCCceEEEEECCCC
Q 004766 375 LQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTE 429 (732)
Q Consensus 375 l~~~d~~~g~~~~~l~~~~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~ 429 (732)
|+++|+++|+. +.|+.. +....++++|||+.++|+... ..-..++.+++...
T Consensus 351 I~v~d~~~g~~-~~LT~~-~~~~~p~~SPDG~~I~f~~~~-~~~~~L~~~~l~g~ 402 (419)
T PRK04043 351 LYLISTNSDYI-RRLTAN-GVNQFPRFSSDGGSIMFIKYL-GNQSALGIIRLNYN 402 (419)
T ss_pred EEEEECCCCCe-EECCCC-CCcCCeEECCCCCEEEEEEcc-CCcEEEEEEecCCC
Confidence 99999987765 777753 233357789999988887554 44457899998765
|
|
| >COG1647 Esterase/lipase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.2e-17 Score=153.06 Aligned_cols=214 Identities=15% Similarity=0.185 Sum_probs=154.8
Q ss_pred CCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCccHHHHHHHHHHHHHHcCCC
Q 004766 479 GSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYT 558 (732)
Q Consensus 479 ~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~ 558 (732)
+.+-.||++||..|++.+..+ ....|.++||.|.+|++||+|-..+.+-.-+...| ++|+.++.++|.+.||
T Consensus 13 ~G~~AVLllHGFTGt~~Dvr~---Lgr~L~e~GyTv~aP~ypGHG~~~e~fl~t~~~DW----~~~v~d~Y~~L~~~gy- 84 (243)
T COG1647 13 GGNRAVLLLHGFTGTPRDVRM---LGRYLNENGYTVYAPRYPGHGTLPEDFLKTTPRDW----WEDVEDGYRDLKEAGY- 84 (243)
T ss_pred cCCEEEEEEeccCCCcHHHHH---HHHHHHHCCceEecCCCCCCCCCHHHHhcCCHHHH----HHHHHHHHHHHHHcCC-
Confidence 444799999998887654443 45678889999999999999998888877655544 6899999999999998
Q ss_pred CCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCccccccccc-CCCCCccc---cccCCCCCHHHHHHHHhcC--cc
Q 004766 559 QSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHK-FTIGHAWV---SDFGCSEEEEEFYWLIKYS--PL 632 (732)
Q Consensus 559 d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~-~~~~~~~~---~~~g~p~~~~~~~~~~~~s--p~ 632 (732)
+.|++.|.||||.+++.++.++| .+++|..++.+.+..... ...--.|. +.|-+++.+..-+.|+++. |.
T Consensus 85 --~eI~v~GlSmGGv~alkla~~~p--~K~iv~m~a~~~~k~~~~iie~~l~y~~~~kk~e~k~~e~~~~e~~~~~~~~~ 160 (243)
T COG1647 85 --DEIAVVGLSMGGVFALKLAYHYP--PKKIVPMCAPVNVKSWRIIIEGLLEYFRNAKKYEGKDQEQIDKEMKSYKDTPM 160 (243)
T ss_pred --CeEEEEeecchhHHHHHHHhhCC--ccceeeecCCcccccchhhhHHHHHHHHHhhhccCCCHHHHHHHHHHhhcchH
Confidence 47999999999999999999998 566665555444321110 00000111 2233333333334455555 32
Q ss_pred ----------cCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeCCCCC
Q 004766 633 ----------HNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGH 702 (732)
Q Consensus 633 ----------~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH 702 (732)
..+.+. -..|+.|+||+.|.+|..||...+..++..+. ..+.+|..|.++||
T Consensus 161 ~~~~~~~~~i~~~~~~------~~~I~~pt~vvq~~~D~mv~~~sA~~Iy~~v~------------s~~KeL~~~e~SgH 222 (243)
T COG1647 161 TTTAQLKKLIKDARRS------LDKIYSPTLVVQGRQDEMVPAESANFIYDHVE------------SDDKELKWLEGSGH 222 (243)
T ss_pred HHHHHHHHHHHHHHhh------hhhcccchhheecccCCCCCHHHHHHHHHhcc------------CCcceeEEEccCCc
Confidence 111111 11389999999999999999999999988876 45679999999999
Q ss_pred CCCCchHHHHHHHHHHHHHHH
Q 004766 703 GVGLPTQKMIDEAADRYGFMA 723 (732)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~fl~ 723 (732)
-+..+..+ -...+.++.||.
T Consensus 223 VIt~D~Er-d~v~e~V~~FL~ 242 (243)
T COG1647 223 VITLDKER-DQVEEDVITFLE 242 (243)
T ss_pred eeecchhH-HHHHHHHHHHhh
Confidence 99887764 678889999985
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.9e-16 Score=169.14 Aligned_cols=258 Identities=14% Similarity=0.063 Sum_probs=164.8
Q ss_pred EEeCCEEEEEEEcC-CCCeeEEEEEeCCCCCceEEeCCCCcCCCCCEEEEeEEECCCCcEEEEEEeccCCceEEEEEEEC
Q 004766 87 FKRGNKYFYFHNTG-LQPQSVLYVQDSLDAKAKVLLDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRI 165 (732)
Q Consensus 87 ~~~g~~~~~~~~~~-~~~~~~l~~r~~~~~~~~~l~D~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl 165 (732)
-.-+.++.|..... +.....||+.+..+...++|+..+. .+..++|||||++|||+...++ ..+|+++|+
T Consensus 165 g~f~~ria~v~~~~~~~~~~~i~i~d~dg~~~~~lt~~~~-------~v~~p~wSPDG~~la~~s~~~~--~~~i~i~dl 235 (429)
T PRK01742 165 GAFRTRIAYVVQKNGGSQPYEVRVADYDGFNQFIVNRSSQ-------PLMSPAWSPDGSKLAYVSFENK--KSQLVVHDL 235 (429)
T ss_pred CccCCEEEEEEEEcCCCceEEEEEECCCCCCceEeccCCC-------ccccceEcCCCCEEEEEEecCC--CcEEEEEeC
Confidence 33456777776533 2234678888764444455554332 2458999999999999976443 368999999
Q ss_pred CCCceeccc-ccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCCcccEEEEEECCCCCCCCeEEEecCCCCee
Q 004766 166 EDQIVEADA-LSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKY 244 (732)
Q Consensus 166 ~~g~~~~~~-~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~ 244 (732)
.+|+..... ..+ ....++|||||+.|+|+.... ...+||.+++.++... .+.. +...
T Consensus 236 ~tg~~~~l~~~~g-~~~~~~wSPDG~~La~~~~~~----------------g~~~Iy~~d~~~~~~~--~lt~---~~~~ 293 (429)
T PRK01742 236 RSGARKVVASFRG-HNGAPAFSPDGSRLAFASSKD----------------GVLNIYVMGANGGTPS--QLTS---GAGN 293 (429)
T ss_pred CCCceEEEecCCC-ccCceeECCCCCEEEEEEecC----------------CcEEEEEEECCCCCeE--eecc---CCCC
Confidence 998743221 222 125799999999999986322 2246999998765432 2222 2223
Q ss_pred EEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCCCCcEEeeecccceEEEEEecCCeEEEEeCCCC
Q 004766 245 IFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDA 324 (732)
Q Consensus 245 ~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~ 324 (732)
...+.|||||++|++.+.+.. ..+||.++..++. .+.+ .... ....|+|||+.|++.+.
T Consensus 294 ~~~~~wSpDG~~i~f~s~~~g--~~~I~~~~~~~~~--------------~~~l-~~~~-~~~~~SpDG~~ia~~~~--- 352 (429)
T PRK01742 294 NTEPSWSPDGQSILFTSDRSG--SPQVYRMSASGGG--------------ASLV-GGRG-YSAQISADGKTLVMING--- 352 (429)
T ss_pred cCCEEECCCCCEEEEEECCCC--CceEEEEECCCCC--------------eEEe-cCCC-CCccCCCCCCEEEEEcC---
Confidence 457999999999999875443 4689999887632 1222 2111 12358999999988654
Q ss_pred CCceEEEEeCCCCCCceEeccCCCCCceeEEEEecCCE-EEEEEecCCeeEEEEEeCCCCceeeecccccceeeEeeccc
Q 004766 325 PKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQ-MIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARR 403 (732)
Q Consensus 325 ~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~~-l~~~~~~~g~~~l~~~d~~~g~~~~~l~~~~g~v~~~~~s~ 403 (732)
..++.+|+.++. ++.+.... ....+.|++++. +++...+++...+++++.+ |+..++|+.+.+.+..++++|
T Consensus 353 --~~i~~~Dl~~g~-~~~lt~~~---~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~-G~~~~~l~~~~g~~~~p~wsp 425 (429)
T PRK01742 353 --DNVVKQDLTSGS-TEVLSSTF---LDESPSISPNGIMIIYSSTQGLGKVLQLVSAD-GRFKARLPGSDGQVKFPAWSP 425 (429)
T ss_pred --CCEEEEECCCCC-eEEecCCC---CCCCceECCCCCEEEEEEcCCCceEEEEEECC-CCceEEccCCCCCCCCcccCC
Confidence 358889998876 44444332 234567887654 5555555555567777775 776677865566665666655
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=8.9e-16 Score=166.65 Aligned_cols=242 Identities=13% Similarity=0.102 Sum_probs=164.3
Q ss_pred cEEEEEEeccC-CceEEEEEEECCCCceecccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCCcccEEEE
Q 004766 144 KYLAYALSYSG-SDWATIKLMRIEDQIVEADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYY 222 (732)
Q Consensus 144 ~~la~~~~~~G-~e~~~i~v~dl~~g~~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 222 (732)
++|||+....+ ...++||++|.+++.....+........++|||||+.|+|++... ...+||+
T Consensus 164 ~riayv~~~~~~~~~~~l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~----------------g~~~i~i 227 (429)
T PRK03629 164 TRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFES----------------GRSALVI 227 (429)
T ss_pred CeEEEEEeeCCCCcceeEEEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecC----------------CCcEEEE
Confidence 78999987543 335799999998876443333322347899999999999987432 2347999
Q ss_pred EECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCCCCcEEeeecc
Q 004766 223 HFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGF 302 (732)
Q Consensus 223 ~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~ 302 (732)
+++.++..+ .+...+. ....+.|||||++|++...... ..+||++|++++. .+.++...
T Consensus 228 ~dl~~G~~~--~l~~~~~---~~~~~~~SPDG~~La~~~~~~g--~~~I~~~d~~tg~--------------~~~lt~~~ 286 (429)
T PRK03629 228 QTLANGAVR--QVASFPR---HNGAPAFSPDGSKLAFALSKTG--SLNLYVMDLASGQ--------------IRQVTDGR 286 (429)
T ss_pred EECCCCCeE--EccCCCC---CcCCeEECCCCCEEEEEEcCCC--CcEEEEEECCCCC--------------EEEccCCC
Confidence 999776433 3332222 2346899999999999865433 4579999998753 34444432
Q ss_pred c-ceEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecC-CEEEEEEecCCeeEEEEEeC
Q 004766 303 D-AQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNL-NQMIVSYLSDVKYVLQIRDL 380 (732)
Q Consensus 303 ~-~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~-~~l~~~~~~~g~~~l~~~d~ 380 (732)
. .....|+|||+.|+|.+++.+ ..+||.+|++++. .+.+.... .....+.|+++ +.+++....++...|+++|+
T Consensus 287 ~~~~~~~wSPDG~~I~f~s~~~g-~~~Iy~~d~~~g~-~~~lt~~~--~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl 362 (429)
T PRK03629 287 SNNTEPTWFPDSQNLAYTSDQAG-RPQVYKVNINGGA-PQRITWEG--SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDL 362 (429)
T ss_pred CCcCceEECCCCCEEEEEeCCCC-CceEEEEECCCCC-eEEeecCC--CCccCEEECCCCCEEEEEEccCCCceEEEEEC
Confidence 2 223469999999999988754 4689999998876 45554332 23345777875 46777777777778999999
Q ss_pred CCCceeeecccccceeeEeecccCCcEEEEEEecCCCCceEEEEECCCC
Q 004766 381 KNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTE 429 (732)
Q Consensus 381 ~~g~~~~~l~~~~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~ 429 (732)
++|+. +.|+.. .....++++|||..++++... .....++.+++.++
T Consensus 363 ~~g~~-~~Lt~~-~~~~~p~~SpDG~~i~~~s~~-~~~~~l~~~~~~G~ 408 (429)
T PRK03629 363 ATGGV-QVLTDT-FLDETPSIAPNGTMVIYSSSQ-GMGSVLNLVSTDGR 408 (429)
T ss_pred CCCCe-EEeCCC-CCCCCceECCCCCEEEEEEcC-CCceEEEEEECCCC
Confidence 87765 666632 223356788999988776553 23456788887554
|
|
| >PRK05371 x-prolyl-dipeptidyl aminopeptidase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.1e-16 Score=180.43 Aligned_cols=259 Identities=17% Similarity=0.152 Sum_probs=173.6
Q ss_pred CCCCCCCceEEEEEEEcc-----CC-CeeEEEEEEEcCCCCCCCCccEEEEEcCCCCcc---------------C---C-
Q 004766 442 PGFDRSEFHVHQVFVPSK-----DG-STKIPMFIVSKKNIKLDGSHPCLLYGYGGFNIS---------------V---T- 496 (732)
Q Consensus 442 ~~~~~~~~~~~~~~~~s~-----dG-~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~---------------~---~- 496 (732)
|-|+...+..|.|++.+. || .-.|.+.|++|+....+-+.|+|+-.--.+... . .
T Consensus 161 ~~~~~~~~ire~v~Vet~~Dtd~dg~~D~v~~~i~rP~~~~~g~k~p~i~~aspY~~g~~~~~~~~~~~~~~~~l~~~~~ 240 (767)
T PRK05371 161 PVFDTSQLIREVVYVETPVDTDQDGKLDLVKVTIVRPKETASGLKVPVIMTASPYYQGTNDVANDKKLHNVDVELYAKPP 240 (767)
T ss_pred cccCcccceEEEEEEeCCCCCCCCCCcceEEEEEECCCccCCCCccceEEecCccccCCCCcccccccccCCccccccCC
Confidence 346777777788888764 44 225788888888754334778877532211110 0 0
Q ss_pred --------------------CCc----ChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCccHHHHHHHHHHHH
Q 004766 497 --------------------PSF----SVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYL 552 (732)
Q Consensus 497 --------------------~~~----~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l 552 (732)
..| ......++..+||+|++.|.||.++.+..|.. ......+|..++|+||
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rGYaVV~~D~RGtg~SeG~~~~-----~~~~E~~D~~~vIeWl 315 (767)
T PRK05371 241 RAQFTPLKTQPRKLPVGPAEESFTHINSYSLNDYFLPRGFAVVYVSGIGTRGSDGCPTT-----GDYQEIESMKAVIDWL 315 (767)
T ss_pred ccccccccccccccCCCccchhhccCcchhHHHHHHhCCeEEEEEcCCCCCCCCCcCcc-----CCHHHHHHHHHHHHHH
Confidence 000 11234566669999999999999876555432 2356779999999999
Q ss_pred HHc--CCCC------------CCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCcccccccccCCCCC-----cc---
Q 004766 553 ISA--GYTQ------------SRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGH-----AW--- 610 (732)
Q Consensus 553 ~~~--~~~d------------~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~-----~~--- 610 (732)
..+ .++| .+|||++|.||||+++.++|+..|..++|+|+.+++.++..++.. .|. .|
T Consensus 316 ~~~~~~~~d~~~~~~~kq~WsnGkVGm~G~SY~G~~~~~aAa~~pp~LkAIVp~a~is~~yd~yr~-~G~~~~~~g~~ge 394 (767)
T PRK05371 316 NGRATAYTDRTRGKEVKADWSNGKVAMTGKSYLGTLPNAVATTGVEGLETIIPEAAISSWYDYYRE-NGLVRAPGGYQGE 394 (767)
T ss_pred hhCCccccccccccccccCCCCCeeEEEEEcHHHHHHHHHHhhCCCcceEEEeeCCCCcHHHHhhc-CCceeccCCcCCc
Confidence 854 2334 589999999999999999999889999999999999887544311 000 01
Q ss_pred ----ccccC-----CC----CCHHHH-------------------HHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEeeC
Q 004766 611 ----VSDFG-----CS----EEEEEF-------------------YWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTAD 658 (732)
Q Consensus 611 ----~~~~g-----~p----~~~~~~-------------------~~~~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~ 658 (732)
..++. .+ ...+.+ +++.+.++..++.+ +++|+|++||.
T Consensus 395 d~d~l~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~fW~~rn~~~~~~k----------IkvPvLlIhGw 464 (767)
T PRK05371 395 DLDVLAELTYSRNLLAGDYLRHNEACEKLLAELTAAQDRKTGDYNDFWDDRNYLKDADK----------IKASVLVVHGL 464 (767)
T ss_pred chhhHHHHhhhcccCcchhhcchHHHHHHHhhhhhhhhhcCCCccHHHHhCCHhhHhhC----------CCCCEEEEeeC
Confidence 00000 00 000111 11233344444444 88999999999
Q ss_pred CCCCCCchHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeCCCCCCCCCchHHHHHHHHHHHHHHHHHhCC
Q 004766 659 HDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLGA 728 (732)
Q Consensus 659 ~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~ 728 (732)
+|.+|++.++.+++++|++. +.+..+.+. ..+|+...... ..+....+..||.++|..
T Consensus 465 ~D~~V~~~~s~~ly~aL~~~----------g~pkkL~l~-~g~H~~~~~~~-~~d~~e~~~~Wfd~~LkG 522 (767)
T PRK05371 465 NDWNVKPKQVYQWWDALPEN----------GVPKKLFLH-QGGHVYPNNWQ-SIDFRDTMNAWFTHKLLG 522 (767)
T ss_pred CCCCCChHHHHHHHHHHHhc----------CCCeEEEEe-CCCccCCCchh-HHHHHHHHHHHHHhcccc
Confidence 99999999999999999987 788888776 45787654333 356677889999999853
|
|
| >COG0657 Aes Esterase/lipase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.72 E-value=7e-16 Score=161.05 Aligned_cols=228 Identities=19% Similarity=0.197 Sum_probs=160.0
Q ss_pred EccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcC-hhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccc
Q 004766 457 PSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFS-VSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGAL 535 (732)
Q Consensus 457 ~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~-~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~ 535 (732)
....+ ..+++.++.| .....++.|+|||+|||.......... .....++...|++|+.+|||-..+.
T Consensus 57 ~~~~~-~~~~~~~y~p-~~~~~~~~p~vly~HGGg~~~g~~~~~~~~~~~~~~~~g~~vv~vdYrlaPe~---------- 124 (312)
T COG0657 57 AGPSG-DGVPVRVYRP-DRKAAATAPVVLYLHGGGWVLGSLRTHDALVARLAAAAGAVVVSVDYRLAPEH---------- 124 (312)
T ss_pred cCCCC-CceeEEEECC-CCCCCCCCcEEEEEeCCeeeecChhhhHHHHHHHHHHcCCEEEecCCCCCCCC----------
Confidence 34456 6799999999 323456799999999997665444444 4456677779999999999987763
Q ss_pred cCCccHHHHHHHHHHHHHHcC---CCCCCcEEEEecChhHHHHHHHHhhCCC----eeeEEEEcCCcccccccccCCCCC
Q 004766 536 AKKQNCFDDFISASEYLISAG---YTQSRKLCIEGGSNGGLLVGACINQRPD----LFGCALAHVGVMDMLRYHKFTIGH 608 (732)
Q Consensus 536 ~~~~~~~~D~~~~~~~l~~~~---~~d~~~i~i~G~S~GG~l~~~~~~~~p~----~f~a~v~~~p~~d~~~~~~~~~~~ 608 (732)
.-...++|+.+++.|+.++. -.||++|+++|.|+||.|++.++.+..+ .-++.+..+|.+|... .. .
T Consensus 125 -~~p~~~~d~~~a~~~l~~~~~~~g~dp~~i~v~GdSAGG~La~~~a~~~~~~~~~~p~~~~li~P~~d~~~-~~-~--- 198 (312)
T COG0657 125 -PFPAALEDAYAAYRWLRANAAELGIDPSRIAVAGDSAGGHLALALALAARDRGLPLPAAQVLISPLLDLTS-SA-A--- 198 (312)
T ss_pred -CCCchHHHHHHHHHHHHhhhHhhCCCccceEEEecCcccHHHHHHHHHHHhcCCCCceEEEEEecccCCcc-cc-c---
Confidence 34567899999999999874 3789999999999999999998886333 5688899999998865 11 0
Q ss_pred ccccccCC--CCCHHHHH--HHH------------hcCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHH
Q 004766 609 AWVSDFGC--SEEEEEFY--WLI------------KYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLL 672 (732)
Q Consensus 609 ~~~~~~g~--p~~~~~~~--~~~------------~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~ 672 (732)
. ..+++. .-...... ... ..||+.... . .-.||+||++|+.|...+ ++..+.
T Consensus 199 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~spl~~~~-~--------~~lPP~~i~~a~~D~l~~--~~~~~a 266 (312)
T COG0657 199 S-LPGYGEADLLDAAAILAWFADLYLGAAPDREDPEASPLASDD-L--------SGLPPTLIQTAEFDPLRD--EGEAYA 266 (312)
T ss_pred c-hhhcCCccccCHHHHHHHHHHHhCcCccccCCCccCcccccc-c--------cCCCCEEEEecCCCcchh--HHHHHH
Confidence 0 011111 11111000 111 123332221 1 126899999999999888 999999
Q ss_pred HHHHHhhcCCCCCCCCCCCEEEEEeCCCCCCCCCch-HHHHHHHHHHHHHHHH
Q 004766 673 ATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPT-QKMIDEAADRYGFMAK 724 (732)
Q Consensus 673 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~-~~~~~~~~~~~~fl~~ 724 (732)
++|+++ |++++++.+++..|++.... ....+.+..+..|+..
T Consensus 267 ~~L~~a----------gv~~~~~~~~g~~H~f~~~~~~~a~~~~~~~~~~l~~ 309 (312)
T COG0657 267 ERLRAA----------GVPVELRVYPGMIHGFDLLTGPEARSALRQIAAFLRA 309 (312)
T ss_pred HHHHHc----------CCeEEEEEeCCcceeccccCcHHHHHHHHHHHHHHHH
Confidence 999998 99999999999999884221 2234445666677663
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=2e-15 Score=164.76 Aligned_cols=243 Identities=17% Similarity=0.147 Sum_probs=164.8
Q ss_pred CcEEEEEEeccC--CceEEEEEEECCCCceecccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCCcccEE
Q 004766 143 AKYLAYALSYSG--SDWATIKLMRIEDQIVEADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEF 220 (732)
Q Consensus 143 G~~la~~~~~~G--~e~~~i~v~dl~~g~~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~~~~~v 220 (732)
+++|||+....+ ...++|+++|.+++.....+..+.....++|||||+.|+|++... ...+|
T Consensus 167 ~~~ia~v~~~~~~~~~~~~l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~----------------~~~~l 230 (433)
T PRK04922 167 WTRIAYVTVSGAGGAMRYALQVADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFER----------------GRSAI 230 (433)
T ss_pred cceEEEEEEeCCCCCceEEEEEECCCCCCceEeecCCCccccccCCCCCCEEEEEecCC----------------CCcEE
Confidence 467999876433 335789999998776443333332347899999999999987432 23579
Q ss_pred EEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCCCCcEEeee
Q 004766 221 YYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLID 300 (732)
Q Consensus 221 ~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l~~ 300 (732)
|++++.++... .+... ++....+.|||||++|++..+... ..+||++++.++. .+.++.
T Consensus 231 ~~~dl~~g~~~--~l~~~---~g~~~~~~~SpDG~~l~~~~s~~g--~~~Iy~~d~~~g~--------------~~~lt~ 289 (433)
T PRK04922 231 YVQDLATGQRE--LVASF---RGINGAPSFSPDGRRLALTLSRDG--NPEIYVMDLGSRQ--------------LTRLTN 289 (433)
T ss_pred EEEECCCCCEE--EeccC---CCCccCceECCCCCEEEEEEeCCC--CceEEEEECCCCC--------------eEECcc
Confidence 99999776432 23222 223346899999999998876544 4689999998753 334443
Q ss_pred cccc-eEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecC-CEEEEEEecCCeeEEEEE
Q 004766 301 GFDA-QYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNL-NQMIVSYLSDVKYVLQIR 378 (732)
Q Consensus 301 ~~~~-~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~-~~l~~~~~~~g~~~l~~~ 378 (732)
.... ....|+|||+.|+|.+++.+ ..+||.++++++. .+.++... .....+.|+++ +.+++....++..+|+++
T Consensus 290 ~~~~~~~~~~spDG~~l~f~sd~~g-~~~iy~~dl~~g~-~~~lt~~g--~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~ 365 (433)
T PRK04922 290 HFGIDTEPTWAPDGKSIYFTSDRGG-RPQIYRVAASGGS-AERLTFQG--NYNARASVSPDGKKIAMVHGSGGQYRIAVM 365 (433)
T ss_pred CCCCccceEECCCCCEEEEEECCCC-CceEEEEECCCCC-eEEeecCC--CCccCEEECCCCCEEEEEECCCCceeEEEE
Confidence 3221 22469999999999988754 4589999998776 45555332 22345778875 566666666666789999
Q ss_pred eCCCCceeeecccccceeeEeecccCCcEEEEEEecCCCCceEEEEECCCC
Q 004766 379 DLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTE 429 (732)
Q Consensus 379 d~~~g~~~~~l~~~~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~ 429 (732)
++++|+. +.|+... ....+++++||+.++++... ..-..+|.+++.++
T Consensus 366 d~~~g~~-~~Lt~~~-~~~~p~~spdG~~i~~~s~~-~g~~~L~~~~~~g~ 413 (433)
T PRK04922 366 DLSTGSV-RTLTPGS-LDESPSFAPNGSMVLYATRE-GGRGVLAAVSTDGR 413 (433)
T ss_pred ECCCCCe-EECCCCC-CCCCceECCCCCEEEEEEec-CCceEEEEEECCCC
Confidence 9987765 5665322 33456789999988877654 33467999998654
|
|
| >PRK10749 lysophospholipase L2; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.4e-16 Score=163.12 Aligned_cols=255 Identities=13% Similarity=0.078 Sum_probs=150.3
Q ss_pred EEEEEEccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHh
Q 004766 452 HQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHK 531 (732)
Q Consensus 452 ~~~~~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~ 531 (732)
+...+...|| .++.+....|. .+.|+||++||..+.. ..|.. ....+.++||.|+++|+||.|..+.....
T Consensus 31 ~~~~~~~~~g-~~l~~~~~~~~-----~~~~~vll~HG~~~~~--~~y~~-~~~~l~~~g~~v~~~D~~G~G~S~~~~~~ 101 (330)
T PRK10749 31 EEAEFTGVDD-IPIRFVRFRAP-----HHDRVVVICPGRIESY--VKYAE-LAYDLFHLGYDVLIIDHRGQGRSGRLLDD 101 (330)
T ss_pred cceEEEcCCC-CEEEEEEccCC-----CCCcEEEEECCccchH--HHHHH-HHHHHHHCCCeEEEEcCCCCCCCCCCCCC
Confidence 4456667799 89888877653 2457899999975432 12332 33334459999999999999876432211
Q ss_pred cccc--cCCccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCccccccccc------
Q 004766 532 GGAL--AKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHK------ 603 (732)
Q Consensus 532 ~~~~--~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~------ 603 (732)
...+ ..-....+|+.+.++.+.+. .+..++.++|+||||+++..++.++|+.++++|+.+|.........
T Consensus 102 ~~~~~~~~~~~~~~d~~~~~~~~~~~--~~~~~~~l~GhSmGG~ia~~~a~~~p~~v~~lvl~~p~~~~~~~~~~~~~~~ 179 (330)
T PRK10749 102 PHRGHVERFNDYVDDLAAFWQQEIQP--GPYRKRYALAHSMGGAILTLFLQRHPGVFDAIALCAPMFGIVLPLPSWMARR 179 (330)
T ss_pred CCcCccccHHHHHHHHHHHHHHHHhc--CCCCCeEEEEEcHHHHHHHHHHHhCCCCcceEEEECchhccCCCCCcHHHHH
Confidence 0000 01112234555555554433 2346899999999999999999999999999999988653210000
Q ss_pred -------CC--------CCCcccccc-C-C--CCCHHHH----HHHHhcCcccCCC--------CCC----CCCCCCCCC
Q 004766 604 -------FT--------IGHAWVSDF-G-C--SEEEEEF----YWLIKYSPLHNVR--------RPW----EQNPDKPFQ 648 (732)
Q Consensus 604 -------~~--------~~~~~~~~~-g-~--p~~~~~~----~~~~~~sp~~~~~--------~~~----~~~~~~~~~ 648 (732)
.. ....|.... . + ..+++.+ +.+. .+|..... ... ........+
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 258 (330)
T PRK10749 180 ILNWAEGHPRIRDGYAIGTGRWRPLPFAINVLTHSRERYRRNLRFYA-DDPELRVGGPTYHWVRESILAGEQVLAGAGDI 258 (330)
T ss_pred HHHHHHHhcCCCCcCCCCCCCCCCCCcCCCCCCCCHHHHHHHHHHHH-hCCCcccCCCcHHHHHHHHHHHHHHHhhccCC
Confidence 00 000111000 0 0 0112111 1111 12211000 000 000001137
Q ss_pred CCeEEEEeeCCCCCCCchHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeCCCCCCCCCchH-HHHHHHHHHHHHHHHH
Q 004766 649 YPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQ-KMIDEAADRYGFMAKM 725 (732)
Q Consensus 649 ~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~-~~~~~~~~~~~fl~~~ 725 (732)
..|+||+||.+|..|++..+.+++++++.+ ......+++++++++||....... .+...+..+.+||.++
T Consensus 259 ~~P~Lii~G~~D~vv~~~~~~~~~~~l~~~-------~~~~~~~~l~~~~gagH~~~~E~~~~r~~v~~~i~~fl~~~ 329 (330)
T PRK10749 259 TTPLLLLQAEEERVVDNRMHDRFCEARTAA-------GHPCEGGKPLVIKGAYHEILFEKDAMRSVALNAIVDFFNRH 329 (330)
T ss_pred CCCEEEEEeCCCeeeCHHHHHHHHHHHhhc-------CCCCCCceEEEeCCCcchhhhCCcHHHHHHHHHHHHHHhhc
Confidence 889999999999999999999999998865 100134589999999998764322 2356778889998764
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.6e-15 Score=161.27 Aligned_cols=240 Identities=13% Similarity=0.100 Sum_probs=161.0
Q ss_pred cEEEEEEeccCCceEEEEEEECCCCceecccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCCcccEEEEE
Q 004766 144 KYLAYALSYSGSDWATIKLMRIEDQIVEADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYH 223 (732)
Q Consensus 144 ~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 223 (732)
.+|||+...++ ..+|+++|.++......+........++|||||+.|+|++... ...+||++
T Consensus 164 ~~iayv~~~~~--~~~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~----------------~~~~I~~~ 225 (427)
T PRK02889 164 TRIAYVIKTGN--RYQLQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFES----------------KKPVVYVH 225 (427)
T ss_pred cEEEEEEccCC--ccEEEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccC----------------CCcEEEEE
Confidence 57999985444 3789999987655333222222347899999999999987532 23469999
Q ss_pred ECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCCCCcEEeeeccc
Q 004766 224 FLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFD 303 (732)
Q Consensus 224 ~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 303 (732)
++.++... .+... ++....+.|||||+.|++..+... ..+||++|+.++. .+.++....
T Consensus 226 dl~~g~~~--~l~~~---~g~~~~~~~SPDG~~la~~~~~~g--~~~Iy~~d~~~~~--------------~~~lt~~~~ 284 (427)
T PRK02889 226 DLATGRRR--VVANF---KGSNSAPAWSPDGRTLAVALSRDG--NSQIYTVNADGSG--------------LRRLTQSSG 284 (427)
T ss_pred ECCCCCEE--EeecC---CCCccceEECCCCCEEEEEEccCC--CceEEEEECCCCC--------------cEECCCCCC
Confidence 99876432 23222 123357899999999998765544 5789999987642 334443221
Q ss_pred c-eEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecC-CEEEEEEecCCeeEEEEEeCC
Q 004766 304 A-QYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNL-NQMIVSYLSDVKYVLQIRDLK 381 (732)
Q Consensus 304 ~-~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~-~~l~~~~~~~g~~~l~~~d~~ 381 (732)
. ....|+|||++|+|.+++.+ ..+||.+++.++. .+.++.+. .......|+++ +.+++....++..+|+++|++
T Consensus 285 ~~~~~~wSpDG~~l~f~s~~~g-~~~Iy~~~~~~g~-~~~lt~~g--~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~ 360 (427)
T PRK02889 285 IDTEPFFSPDGRSIYFTSDRGG-APQIYRMPASGGA-AQRVTFTG--SYNTSPRISPDGKLLAYISRVGGAFKLYVQDLA 360 (427)
T ss_pred CCcCeEEcCCCCEEEEEecCCC-CcEEEEEECCCCc-eEEEecCC--CCcCceEECCCCCEEEEEEccCCcEEEEEEECC
Confidence 1 12459999999999888654 4689999988765 45554332 22335677765 566666666666789999998
Q ss_pred CCceeeecccccceeeEeecccCCcEEEEEEecCCCCceEEEEECCCC
Q 004766 382 NGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTE 429 (732)
Q Consensus 382 ~g~~~~~l~~~~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~ 429 (732)
+|+. +.++.. .....++++||++.++|+...-. -..+|.+++.+.
T Consensus 361 ~g~~-~~lt~~-~~~~~p~~spdg~~l~~~~~~~g-~~~l~~~~~~g~ 405 (427)
T PRK02889 361 TGQV-TALTDT-TRDESPSFAPNGRYILYATQQGG-RSVLAAVSSDGR 405 (427)
T ss_pred CCCe-EEccCC-CCccCceECCCCCEEEEEEecCC-CEEEEEEECCCC
Confidence 7765 566533 22346778999998888765433 357888887543
|
|
| >KOG1455 consensus Lysophospholipase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.70 E-value=9.7e-16 Score=148.29 Aligned_cols=254 Identities=13% Similarity=0.088 Sum_probs=162.7
Q ss_pred EEEEEEEccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHH
Q 004766 451 VHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWH 530 (732)
Q Consensus 451 ~~~~~~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~ 530 (732)
...-.+++.+| .++-.....|..- ..+.-+|+++||..+. ....|... ...|+..||.|+..|++|+|....
T Consensus 27 ~~~~~~~n~rG-~~lft~~W~p~~~--~~pr~lv~~~HG~g~~-~s~~~~~~-a~~l~~~g~~v~a~D~~GhG~SdG--- 98 (313)
T KOG1455|consen 27 YSESFFTNPRG-AKLFTQSWLPLSG--TEPRGLVFLCHGYGEH-SSWRYQST-AKRLAKSGFAVYAIDYEGHGRSDG--- 98 (313)
T ss_pred eeeeeEEcCCC-CEeEEEecccCCC--CCCceEEEEEcCCccc-chhhHHHH-HHHHHhCCCeEEEeeccCCCcCCC---
Confidence 34456778899 8998887877652 2567789999996543 23455543 455566999999999999885320
Q ss_pred hcccccCCccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCccccccccc-------
Q 004766 531 KGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHK------- 603 (732)
Q Consensus 531 ~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~------- 603 (732)
..+....-...++|+++-.+....+.--.--...++|+||||.+++.++.+.|+.|.++|..+|.+-+..-.+
T Consensus 99 l~~yi~~~d~~v~D~~~~~~~i~~~~e~~~lp~FL~GeSMGGAV~Ll~~~k~p~~w~G~ilvaPmc~i~~~~kp~p~v~~ 178 (313)
T KOG1455|consen 99 LHAYVPSFDLVVDDVISFFDSIKEREENKGLPRFLFGESMGGAVALLIALKDPNFWDGAILVAPMCKISEDTKPHPPVIS 178 (313)
T ss_pred CcccCCcHHHHHHHHHHHHHHHhhccccCCCCeeeeecCcchHHHHHHHhhCCcccccceeeecccccCCccCCCcHHHH
Confidence 0111111223456666666665555333335689999999999999999999999999999999764432211
Q ss_pred -----CCCCCccc----cccCCC--CCHHHHHHHHhcCcccCCCCC------------CCCCCCCCCCCCeEEEEeeCCC
Q 004766 604 -----FTIGHAWV----SDFGCS--EEEEEFYWLIKYSPLHNVRRP------------WEQNPDKPFQYPSTLLLTADHD 660 (732)
Q Consensus 604 -----~~~~~~~~----~~~g~p--~~~~~~~~~~~~sp~~~~~~~------------~~~~~~~~~~~~p~Li~~g~~D 660 (732)
....+.|. .....+ .+++.. .+...+|+-..... .+.-+-...+.-|+||+||+.|
T Consensus 179 ~l~~l~~liP~wk~vp~~d~~~~~~kdp~~r-~~~~~npl~y~g~pRl~T~~ElLr~~~~le~~l~~vtvPflilHG~dD 257 (313)
T KOG1455|consen 179 ILTLLSKLIPTWKIVPTKDIIDVAFKDPEKR-KILRSDPLCYTGKPRLKTAYELLRVTADLEKNLNEVTVPFLILHGTDD 257 (313)
T ss_pred HHHHHHHhCCceeecCCccccccccCCHHHH-HHhhcCCceecCCccHHHHHHHHHHHHHHHHhcccccccEEEEecCCC
Confidence 01112232 001111 334332 22333444211100 0000000137889999999999
Q ss_pred CCCCchHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeCCCCCCCCC--chHHHHHHHHHHHHHHHHH
Q 004766 661 DRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGL--PTQKMIDEAADRYGFMAKM 725 (732)
Q Consensus 661 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~--~~~~~~~~~~~~~~fl~~~ 725 (732)
.++.+.-+.++++... ..+..+++|||+-|.... +....-..+.++.+||.++
T Consensus 258 ~VTDp~~Sk~Lye~A~------------S~DKTlKlYpGm~H~Ll~gE~~en~e~Vf~DI~~Wl~~r 312 (313)
T KOG1455|consen 258 KVTDPKVSKELYEKAS------------SSDKTLKLYPGMWHSLLSGEPDENVEIVFGDIISWLDER 312 (313)
T ss_pred cccCcHHHHHHHHhcc------------CCCCceeccccHHHHhhcCCCchhHHHHHHHHHHHHHhc
Confidence 9999999999998755 456789999999998763 4444567889999999865
|
|
| >PRK11460 putative hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=8.8e-16 Score=152.16 Aligned_cols=186 Identities=14% Similarity=0.140 Sum_probs=130.0
Q ss_pred CCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCC----CCchhHHhcccccCCccH-------HHHHHH
Q 004766 479 GSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGG----EYGEEWHKGGALAKKQNC-------FDDFIS 547 (732)
Q Consensus 479 ~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g----~~g~~~~~~~~~~~~~~~-------~~D~~~ 547 (732)
.+.|+||++||..++.. .|. .+...|...++.+.++.+||.. ..|..|+.... ....+. .+.+.+
T Consensus 14 ~~~~~vIlLHG~G~~~~--~~~-~l~~~l~~~~~~~~~i~~~g~~~~~~~~g~~W~~~~~-~~~~~~~~~~~~~~~~l~~ 89 (232)
T PRK11460 14 PAQQLLLLFHGVGDNPV--AMG-EIGSWFAPAFPDALVVSVGGPEPSGNGAGRQWFSVQG-ITEDNRQARVAAIMPTFIE 89 (232)
T ss_pred CCCcEEEEEeCCCCChH--HHH-HHHHHHHHHCCCCEEECCCCCCCcCCCCCcccccCCC-CCccchHHHHHHHHHHHHH
Confidence 46799999999776543 233 2345555466655566666632 23667775311 111122 234455
Q ss_pred HHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCcccccccccCCCCCccccccCCCCCHHHHHHHH
Q 004766 548 ASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHAWVSDFGCSEEEEEFYWLI 627 (732)
Q Consensus 548 ~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~ 627 (732)
.++++.++..++++||+++|+|+||.+++.++.++|++++++|+..|.+. . .+.
T Consensus 90 ~i~~~~~~~~~~~~~i~l~GfS~Gg~~al~~a~~~~~~~~~vv~~sg~~~---------------~--~~~--------- 143 (232)
T PRK11460 90 TVRYWQQQSGVGASATALIGFSQGAIMALEAVKAEPGLAGRVIAFSGRYA---------------S--LPE--------- 143 (232)
T ss_pred HHHHHHHhcCCChhhEEEEEECHHHHHHHHHHHhCCCcceEEEEeccccc---------------c--ccc---------
Confidence 66777777667889999999999999999999888998888876655210 0 000
Q ss_pred hcCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeCCCCCCCCCc
Q 004766 628 KYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLP 707 (732)
Q Consensus 628 ~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~ 707 (732)
. . ...+|+|++||.+|++||++.+.+++++|++. +.++++++|+++||.+..
T Consensus 144 --~------~---------~~~~pvli~hG~~D~vvp~~~~~~~~~~L~~~----------g~~~~~~~~~~~gH~i~~- 195 (232)
T PRK11460 144 --T------A---------PTATTIHLIHGGEDPVIDVAHAVAAQEALISL----------GGDVTLDIVEDLGHAIDP- 195 (232)
T ss_pred --c------c---------cCCCcEEEEecCCCCccCHHHHHHHHHHHHHC----------CCCeEEEEECCCCCCCCH-
Confidence 0 0 13579999999999999999999999999987 888999999999999863
Q ss_pred hHHHHHHHHHHHHHHHHHhC
Q 004766 708 TQKMIDEAADRYGFMAKMLG 727 (732)
Q Consensus 708 ~~~~~~~~~~~~~fl~~~l~ 727 (732)
++...+.+||.+.|.
T Consensus 196 -----~~~~~~~~~l~~~l~ 210 (232)
T PRK11460 196 -----RLMQFALDRLRYTVP 210 (232)
T ss_pred -----HHHHHHHHHHHHHcc
Confidence 334456667776653
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=6.1e-15 Score=161.39 Aligned_cols=251 Identities=13% Similarity=0.116 Sum_probs=166.6
Q ss_pred EEeEEECCCCcEEEEEEecc--CCceEEEEEEECCCCceecccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCc
Q 004766 134 LIKVSVSEDAKYLAYALSYS--GSDWATIKLMRIEDQIVEADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTE 211 (732)
Q Consensus 134 ~~~~~~SPDG~~la~~~~~~--G~e~~~i~v~dl~~g~~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~ 211 (732)
+.+.... -.++|||+.... +.+.++|+++|.+++.....+........++|||||+.|+|++...
T Consensus 154 ltg~~g~-f~~~ia~v~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~------------ 220 (430)
T PRK00178 154 LTGIKGA-FSTRILYVTAERFSVNTRYTLQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQ------------ 220 (430)
T ss_pred HhCCCcc-ceeeEEEEEeeCCCCCcceEEEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCC------------
Confidence 3344333 456799987543 2346799999998876433322222347899999999999987532
Q ss_pred ccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCC
Q 004766 212 TDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDG 291 (732)
Q Consensus 212 ~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 291 (732)
...+||++++.++..+ .+... .+....+.|||||++|++...... ..+||++|++++.
T Consensus 221 ----~~~~l~~~~l~~g~~~--~l~~~---~g~~~~~~~SpDG~~la~~~~~~g--~~~Iy~~d~~~~~----------- 278 (430)
T PRK00178 221 ----KRPRIFVQNLDTGRRE--QITNF---EGLNGAPAWSPDGSKLAFVLSKDG--NPEIYVMDLASRQ----------- 278 (430)
T ss_pred ----CCCEEEEEECCCCCEE--EccCC---CCCcCCeEECCCCCEEEEEEccCC--CceEEEEECCCCC-----------
Confidence 2347999999876543 23222 123346899999999998876544 4789999998753
Q ss_pred CCCcEEeeecccce-EEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecC-CEEEEEEec
Q 004766 292 LLPFVKLIDGFDAQ-YEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNL-NQMIVSYLS 369 (732)
Q Consensus 292 ~~~~~~l~~~~~~~-~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~-~~l~~~~~~ 369 (732)
.+.++...... ...|+|||+.|+|.+++.+ ..+||.+++.++. .+.++... .......|+++ +.+++....
T Consensus 279 ---~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g-~~~iy~~d~~~g~-~~~lt~~~--~~~~~~~~Spdg~~i~~~~~~ 351 (430)
T PRK00178 279 ---LSRVTNHPAIDTEPFWGKDGRTLYFTSDRGG-KPQIYKVNVNGGR-AERVTFVG--NYNARPRLSADGKTLVMVHRQ 351 (430)
T ss_pred ---eEEcccCCCCcCCeEECCCCCEEEEEECCCC-CceEEEEECCCCC-EEEeecCC--CCccceEECCCCCEEEEEEcc
Confidence 33444322222 2469999999999988754 4689999998876 55555332 22234567764 567777766
Q ss_pred CCeeEEEEEeCCCCceeeecccccceeeEeecccCCcEEEEEEecCCCCceEEEEECCCC
Q 004766 370 DVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTE 429 (732)
Q Consensus 370 ~g~~~l~~~d~~~g~~~~~l~~~~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~ 429 (732)
++...|+++|+++|+. +.|+... ....+++++||..++|+.... .-..+|.+++.++
T Consensus 352 ~~~~~l~~~dl~tg~~-~~lt~~~-~~~~p~~spdg~~i~~~~~~~-g~~~l~~~~~~g~ 408 (430)
T PRK00178 352 DGNFHVAAQDLQRGSV-RILTDTS-LDESPSVAPNGTMLIYATRQQ-GRGVLMLVSINGR 408 (430)
T ss_pred CCceEEEEEECCCCCE-EEccCCC-CCCCceECCCCCEEEEEEecC-CceEEEEEECCCC
Confidence 6667899999987765 6665432 222457889999887765432 2356888887654
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=8.8e-15 Score=159.51 Aligned_cols=242 Identities=15% Similarity=0.148 Sum_probs=162.5
Q ss_pred cEEEEEEeccCC-ceEEEEEEECCCCceecccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCCcccEEEE
Q 004766 144 KYLAYALSYSGS-DWATIKLMRIEDQIVEADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYY 222 (732)
Q Consensus 144 ~~la~~~~~~G~-e~~~i~v~dl~~g~~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 222 (732)
.+|||+....+. ..++|+++|.+++.....+........+.|||||+.|+|++... ...+||+
T Consensus 183 ~riayv~~~~~~~~~~~l~i~d~dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~----------------g~~~L~~ 246 (448)
T PRK04792 183 TRIAYVVVNDKDKYPYQLMIADYDGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFEN----------------RKAEIFV 246 (448)
T ss_pred CEEEEEEeeCCCCCceEEEEEeCCCCCceEeecCCCcccCceECCCCCEEEEEEecC----------------CCcEEEE
Confidence 678888765543 24799999998765332222222346899999999999987532 2357999
Q ss_pred EECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCCCCcEEeeecc
Q 004766 223 HFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGF 302 (732)
Q Consensus 223 ~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~ 302 (732)
+++.++... .+...+ .....+.|||||++|++...... ..+||++|++++. .+.++...
T Consensus 247 ~dl~tg~~~--~lt~~~---g~~~~~~wSPDG~~La~~~~~~g--~~~Iy~~dl~tg~--------------~~~lt~~~ 305 (448)
T PRK04792 247 QDIYTQVRE--KVTSFP---GINGAPRFSPDGKKLALVLSKDG--QPEIYVVDIATKA--------------LTRITRHR 305 (448)
T ss_pred EECCCCCeE--EecCCC---CCcCCeeECCCCCEEEEEEeCCC--CeEEEEEECCCCC--------------eEECccCC
Confidence 999876432 333221 22346899999999998876544 5789999998753 33444432
Q ss_pred c-ceEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecC-CEEEEEEecCCeeEEEEEeC
Q 004766 303 D-AQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNL-NQMIVSYLSDVKYVLQIRDL 380 (732)
Q Consensus 303 ~-~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~-~~l~~~~~~~g~~~l~~~d~ 380 (732)
. .....|+|||+.|+|.+++++ ..+||.+|++++. .+.++... .......|+++ +.+++....++..+|+++|+
T Consensus 306 ~~~~~p~wSpDG~~I~f~s~~~g-~~~Iy~~dl~~g~-~~~Lt~~g--~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl 381 (448)
T PRK04792 306 AIDTEPSWHPDGKSLIFTSERGG-KPQIYRVNLASGK-VSRLTFEG--EQNLGGSITPDGRSMIMVNRTNGKFNIARQDL 381 (448)
T ss_pred CCccceEECCCCCEEEEEECCCC-CceEEEEECCCCC-EEEEecCC--CCCcCeeECCCCCEEEEEEecCCceEEEEEEC
Confidence 2 123469999999999887654 4689999998876 55564332 12234567765 56777777677778999999
Q ss_pred CCCceeeecccccceeeEeecccCCcEEEEEEecCCCCceEEEEECCCC
Q 004766 381 KNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTE 429 (732)
Q Consensus 381 ~~g~~~~~l~~~~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~ 429 (732)
++|+. +.++... .....+++|||+.++|+... .....+|.++...+
T Consensus 382 ~~g~~-~~lt~~~-~d~~ps~spdG~~I~~~~~~-~g~~~l~~~~~~G~ 427 (448)
T PRK04792 382 ETGAM-QVLTSTR-LDESPSVAPNGTMVIYSTTY-QGKQVLAAVSIDGR 427 (448)
T ss_pred CCCCe-EEccCCC-CCCCceECCCCCEEEEEEec-CCceEEEEEECCCC
Confidence 87765 5565321 22245688999988876654 33456888887544
|
|
| >KOG1552 consensus Predicted alpha/beta hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=7.6e-16 Score=146.20 Aligned_cols=219 Identities=17% Similarity=0.158 Sum_probs=153.5
Q ss_pred eEEEEEEEccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHH-HhcCcEEEEEcccCCCCCchh
Q 004766 450 HVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILM-RHLGAVFCIANIRGGGEYGEE 528 (732)
Q Consensus 450 ~~~~~~~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l-~~~G~~v~~~~~rG~g~~g~~ 528 (732)
.++.+..++..| -.+-+..+.|.. ...++++|.||--. +.+-..++..-| ...++.++..||+|.|..+..
T Consensus 34 ~v~v~~~~t~rg-n~~~~~y~~~~~----~~~~~lly~hGNa~---Dlgq~~~~~~~l~~~ln~nv~~~DYSGyG~S~G~ 105 (258)
T KOG1552|consen 34 FVEVFKVKTSRG-NEIVCMYVRPPE----AAHPTLLYSHGNAA---DLGQMVELFKELSIFLNCNVVSYDYSGYGRSSGK 105 (258)
T ss_pred ccceEEeecCCC-CEEEEEEEcCcc----ccceEEEEcCCccc---chHHHHHHHHHHhhcccceEEEEecccccccCCC
Confidence 344455666677 678777777754 35799999999722 222111222222 224899999999997753222
Q ss_pred HHhcccccCCccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCcccccccccC-CCC
Q 004766 529 WHKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKF-TIG 607 (732)
Q Consensus 529 ~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~-~~~ 607 (732)
....|.++|+.++.+||.++.- .+++|+++|+|+|...+..++.+.| .+|+|+.+|+.+.++.+.. ...
T Consensus 106 -------psE~n~y~Di~avye~Lr~~~g-~~~~Iil~G~SiGt~~tv~Lasr~~--~~alVL~SPf~S~~rv~~~~~~~ 175 (258)
T KOG1552|consen 106 -------PSERNLYADIKAVYEWLRNRYG-SPERIILYGQSIGTVPTVDLASRYP--LAAVVLHSPFTSGMRVAFPDTKT 175 (258)
T ss_pred -------cccccchhhHHHHHHHHHhhcC-CCceEEEEEecCCchhhhhHhhcCC--cceEEEeccchhhhhhhccCcce
Confidence 2223889999999999998854 7899999999999999999999988 8999999999998876542 221
Q ss_pred CccccccCCCCCHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhcCCCCCCC
Q 004766 608 HAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSP 687 (732)
Q Consensus 608 ~~~~~~~g~p~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~ 687 (732)
..|...|- -+..++. +++|+||+||.+|++|+..|+.+++++.++.
T Consensus 176 ~~~~d~f~---------------~i~kI~~----------i~~PVLiiHgtdDevv~~sHg~~Lye~~k~~--------- 221 (258)
T KOG1552|consen 176 TYCFDAFP---------------NIEKISK----------ITCPVLIIHGTDDEVVDFSHGKALYERCKEK--------- 221 (258)
T ss_pred EEeecccc---------------ccCccee----------ccCCEEEEecccCceecccccHHHHHhcccc---------
Confidence 23333331 1445554 8899999999999999999999999987753
Q ss_pred CCCCEEEEEeCCCCCCCCCchHHHHHHHHHHHHHHHHHhC
Q 004766 688 QTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLG 727 (732)
Q Consensus 688 ~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 727 (732)
++-....++||....-..+ ....+..|+...+.
T Consensus 222 ----~epl~v~g~gH~~~~~~~~---yi~~l~~f~~~~~~ 254 (258)
T KOG1552|consen 222 ----VEPLWVKGAGHNDIELYPE---YIEHLRRFISSVLP 254 (258)
T ss_pred ----CCCcEEecCCCcccccCHH---HHHHHHHHHHHhcc
Confidence 5556667999976543222 33334456555443
|
|
| >PLN02652 hydrolase; alpha/beta fold family protein | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.7e-15 Score=158.63 Aligned_cols=242 Identities=13% Similarity=0.050 Sum_probs=155.3
Q ss_pred eEEEEEEEccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhH
Q 004766 450 HVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEW 529 (732)
Q Consensus 450 ~~~~~~~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~ 529 (732)
......+...+| ..+++..+.|.. ..+.|+||++||..+... .|. .+...|+++||.|+++|+||.|.....+
T Consensus 109 ~~~~~~~~~~~~-~~l~~~~~~p~~---~~~~~~Vl~lHG~~~~~~--~~~-~~a~~L~~~Gy~V~~~D~rGhG~S~~~~ 181 (395)
T PLN02652 109 RWATSLFYGARR-NALFCRSWAPAA---GEMRGILIIIHGLNEHSG--RYL-HFAKQLTSCGFGVYAMDWIGHGGSDGLH 181 (395)
T ss_pred eEEEEEEECCCC-CEEEEEEecCCC---CCCceEEEEECCchHHHH--HHH-HHHHHHHHCCCEEEEeCCCCCCCCCCCC
Confidence 345566777888 899999888854 235689999999765421 233 3455566689999999999988653321
Q ss_pred HhcccccCCccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCC---eeeEEEEcCCcccccccccC--
Q 004766 530 HKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPD---LFGCALAHVGVMDMLRYHKF-- 604 (732)
Q Consensus 530 ~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~---~f~a~v~~~p~~d~~~~~~~-- 604 (732)
. .........+|+.++++++.... ...++.++|+|+||++++.++. +|+ .++++|+.+|..++......
T Consensus 182 ~---~~~~~~~~~~Dl~~~l~~l~~~~--~~~~i~lvGhSmGG~ial~~a~-~p~~~~~v~glVL~sP~l~~~~~~~~~~ 255 (395)
T PLN02652 182 G---YVPSLDYVVEDTEAFLEKIRSEN--PGVPCFLFGHSTGGAVVLKAAS-YPSIEDKLEGIVLTSPALRVKPAHPIVG 255 (395)
T ss_pred C---CCcCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEECHHHHHHHHHHh-ccCcccccceEEEECcccccccchHHHH
Confidence 1 01111223577888888877541 2247999999999999987764 564 78999999998654321100
Q ss_pred -------CCCCcc----ccccCCC--CCHHHHHHHHhcCcc----------------------cCCCCCCCCCCCCCCCC
Q 004766 605 -------TIGHAW----VSDFGCS--EEEEEFYWLIKYSPL----------------------HNVRRPWEQNPDKPFQY 649 (732)
Q Consensus 605 -------~~~~~~----~~~~g~p--~~~~~~~~~~~~sp~----------------------~~~~~~~~~~~~~~~~~ 649 (732)
...+.+ ...++.+ .+++...... .+|+ .++. .+.
T Consensus 256 ~~~~l~~~~~p~~~~~~~~~~~~~~s~~~~~~~~~~-~dp~~~~g~i~~~~~~~~~~~~~~l~~~L~----------~I~ 324 (395)
T PLN02652 256 AVAPIFSLVAPRFQFKGANKRGIPVSRDPAALLAKY-SDPLVYTGPIRVRTGHEILRISSYLTRNFK----------SVT 324 (395)
T ss_pred HHHHHHHHhCCCCcccCcccccCCcCCCHHHHHHHh-cCCCcccCCchHHHHHHHHHHHHHHHhhcc----------cCC
Confidence 000000 0001111 1111110000 0111 1122 378
Q ss_pred CeEEEEeeCCCCCCCchHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeCCCCCCCCCchHHHHHHHHHHHHHHHHHhCC
Q 004766 650 PSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLGA 728 (732)
Q Consensus 650 ~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~ 728 (732)
.|+||+||.+|..||+.++.++++++. +....++++++++|....... ..+.++.+.+||..+++.
T Consensus 325 vPvLIi~G~~D~vvp~~~a~~l~~~~~------------~~~k~l~~~~ga~H~l~~e~~-~e~v~~~I~~FL~~~~~~ 390 (395)
T PLN02652 325 VPFMVLHGTADRVTDPLASQDLYNEAA------------SRHKDIKLYDGFLHDLLFEPE-REEVGRDIIDWMEKRLDL 390 (395)
T ss_pred CCEEEEEeCCCCCCCHHHHHHHHHhcC------------CCCceEEEECCCeEEeccCCC-HHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999988865 334577889999998754422 356778899999998864
|
|
| >PF07859 Abhydrolase_3: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.4e-15 Score=149.52 Aligned_cols=185 Identities=17% Similarity=0.137 Sum_probs=123.7
Q ss_pred EEEEcCCCCccCCCCcChhHH-HHHHhcCcEEEEEcccCCCCCchhHHhcccccCCccHHHHHHHHHHHHHHc---CCCC
Q 004766 484 LLYGYGGFNISVTPSFSVSRT-ILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISA---GYTQ 559 (732)
Q Consensus 484 vv~~hG~~~~~~~~~~~~~~~-~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~---~~~d 559 (732)
|||+|||............+. .++.++|++|+.+|||-+.+ ..-...++|+.++++|+.++ --.|
T Consensus 1 v~~~HGGg~~~g~~~~~~~~~~~la~~~g~~v~~~~Yrl~p~-----------~~~p~~~~D~~~a~~~l~~~~~~~~~d 69 (211)
T PF07859_consen 1 VVYIHGGGWVMGSKESHWPFAARLAAERGFVVVSIDYRLAPE-----------APFPAALEDVKAAYRWLLKNADKLGID 69 (211)
T ss_dssp EEEE--STTTSCGTTTHHHHHHHHHHHHTSEEEEEE---TTT-----------SSTTHHHHHHHHHHHHHHHTHHHHTEE
T ss_pred CEEECCcccccCChHHHHHHHHHHHhhccEEEEEeecccccc-----------ccccccccccccceeeecccccccccc
Confidence 799999976644444434443 44445899999999997654 23356789999999999987 2368
Q ss_pred CCcEEEEecChhHHHHHHHHhhCCC----eeeEEEEcCCcccccccccCCCCCccc--cccC-CC-CCHHHHH----HHH
Q 004766 560 SRKLCIEGGSNGGLLVGACINQRPD----LFGCALAHVGVMDMLRYHKFTIGHAWV--SDFG-CS-EEEEEFY----WLI 627 (732)
Q Consensus 560 ~~~i~i~G~S~GG~l~~~~~~~~p~----~f~a~v~~~p~~d~~~~~~~~~~~~~~--~~~g-~p-~~~~~~~----~~~ 627 (732)
+++|+++|.|+||.|++.++.+..+ ..+++++.+|+.|+..... ..+. .++. .+ -.....+ .+.
T Consensus 70 ~~~i~l~G~SAGg~la~~~~~~~~~~~~~~~~~~~~~~p~~d~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (211)
T PF07859_consen 70 PERIVLIGDSAGGHLALSLALRARDRGLPKPKGIILISPWTDLQDFDG----PSYDDSNENKDDPFLPAPKIDWFWKLYL 145 (211)
T ss_dssp EEEEEEEEETHHHHHHHHHHHHHHHTTTCHESEEEEESCHSSTSTSSC----HHHHHHHHHSTTSSSBHHHHHHHHHHHH
T ss_pred ccceEEeecccccchhhhhhhhhhhhcccchhhhhcccccccchhccc----cccccccccccccccccccccccccccc
Confidence 9999999999999999998874322 4899999999888711100 0010 0010 01 0111111 111
Q ss_pred --------hcCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeCC
Q 004766 628 --------KYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERK 699 (732)
Q Consensus 628 --------~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 699 (732)
..||+.. ... ...||+||++|+.|..+ .++.+|+++|++. |++++++++++
T Consensus 146 ~~~~~~~~~~sp~~~-~~~--------~~~Pp~~i~~g~~D~l~--~~~~~~~~~L~~~----------gv~v~~~~~~g 204 (211)
T PF07859_consen 146 PGSDRDDPLASPLNA-SDL--------KGLPPTLIIHGEDDVLV--DDSLRFAEKLKKA----------GVDVELHVYPG 204 (211)
T ss_dssp STGGTTSTTTSGGGS-SCC--------TTCHEEEEEEETTSTTH--HHHHHHHHHHHHT----------T-EEEEEEETT
T ss_pred ccccccccccccccc-ccc--------ccCCCeeeeccccccch--HHHHHHHHHHHHC----------CCCEEEEEECC
Confidence 2355544 121 25799999999999764 6899999999998 99999999999
Q ss_pred CCCCC
Q 004766 700 AGHGV 704 (732)
Q Consensus 700 ~gH~~ 704 (732)
.+|++
T Consensus 205 ~~H~f 209 (211)
T PF07859_consen 205 MPHGF 209 (211)
T ss_dssp EETTG
T ss_pred CeEEe
Confidence 99986
|
; InterPro: IPR013094 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents the catalytic domain fold-3 of alpha/beta hydrolase. ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3D7R_B 2C7B_B 3ZWQ_B 2YH2_B 3BXP_A 3D3N_A 1LZK_A 1LZL_A 2O7V_A 2O7R_A .... |
| >PF10503 Esterase_phd: Esterase PHB depolymerase | Back alignment and domain information |
|---|
Probab=99.63 E-value=6.6e-15 Score=141.52 Aligned_cols=195 Identities=13% Similarity=0.099 Sum_probs=127.4
Q ss_pred EEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCch--hHHhcccccCCccHHH
Q 004766 466 PMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGE--EWHKGGALAKKQNCFD 543 (732)
Q Consensus 466 ~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~--~~~~~~~~~~~~~~~~ 543 (732)
.+.|+.|+... .++.|+||.+||+.+......-...+..+.+++||+|+.|+......... .|.. .....+.....
T Consensus 2 ~Y~lYvP~~~~-~~~~PLVv~LHG~~~~a~~~~~~s~~~~lAd~~GfivvyP~~~~~~~~~~cw~w~~-~~~~~g~~d~~ 79 (220)
T PF10503_consen 2 SYRLYVPPGAP-RGPVPLVVVLHGCGQSAEDFAAGSGWNALADREGFIVVYPEQSRRANPQGCWNWFS-DDQQRGGGDVA 79 (220)
T ss_pred cEEEecCCCCC-CCCCCEEEEeCCCCCCHHHHHhhcCHHHHhhcCCeEEEcccccccCCCCCcccccc-cccccCccchh
Confidence 46788898753 35789999999997764322212235677888999999998653332333 3444 22223344556
Q ss_pred HHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCcccccccccCCCCCccccccCCCCCHHHH
Q 004766 544 DFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHAWVSDFGCSEEEEEF 623 (732)
Q Consensus 544 D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~~~~~~~g~p~~~~~~ 623 (732)
.+.+.+++++++.-+|++||.+.|.|+||.|+..++..+||+|+|+...+++.--......... .-+ .-|....+...
T Consensus 80 ~i~~lv~~v~~~~~iD~~RVyv~G~S~Gg~ma~~la~~~pd~faa~a~~sG~~~~~a~~~~~a~-~~m-~~g~~~~p~~~ 157 (220)
T PF10503_consen 80 FIAALVDYVAARYNIDPSRVYVTGLSNGGMMANVLACAYPDLFAAVAVVSGVPYGCAASGASAL-SAM-RSGPRPAPAAA 157 (220)
T ss_pred hHHHHHHhHhhhcccCCCceeeEEECHHHHHHHHHHHhCCccceEEEeecccccccccCcccHH-HHh-hCCCCCChHHH
Confidence 6778899999998899999999999999999999999999999999877765321111100000 000 11222222221
Q ss_pred HHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHh
Q 004766 624 YWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYV 678 (732)
Q Consensus 624 ~~~~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~ 678 (732)
..-...++ . ....|++|+||..|..|.+..+.++++++...
T Consensus 158 ~~a~~~~g-----~---------~~~~P~~v~hG~~D~tV~~~n~~~~~~q~~~~ 198 (220)
T PF10503_consen 158 WGARSDAG-----A---------YPGYPRIVFHGTADTTVNPQNADQLVAQWLNV 198 (220)
T ss_pred HHhhhhcc-----C---------CCCCCEEEEecCCCCccCcchHHHHHHHHHHc
Confidence 11111111 0 01237889999999999999999999998865
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1e-13 Score=151.08 Aligned_cols=235 Identities=14% Similarity=0.085 Sum_probs=150.7
Q ss_pred CcEEEEEEeccC-CceEEEEEEECCCCceecccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCCcccEEE
Q 004766 143 AKYLAYALSYSG-SDWATIKLMRIEDQIVEADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFY 221 (732)
Q Consensus 143 G~~la~~~~~~G-~e~~~i~v~dl~~g~~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~~~~~v~ 221 (732)
+++|||+....+ ...++|+++|.+++.....+........++|||||+.|+|++... ...+||
T Consensus 168 ~~ria~v~~~~~~~~~~~i~i~d~dg~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~----------------~~~~i~ 231 (429)
T PRK01742 168 RTRIAYVVQKNGGSQPYEVRVADYDGFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFEN----------------KKSQLV 231 (429)
T ss_pred CCEEEEEEEEcCCCceEEEEEECCCCCCceEeccCCCccccceEcCCCCEEEEEEecC----------------CCcEEE
Confidence 688999987654 345899999998776433232222347899999999999987532 234799
Q ss_pred EEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCCCCcEEeeec
Q 004766 222 YHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDG 301 (732)
Q Consensus 222 ~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~ 301 (732)
++++.++... .+.... +....++|||||++|++...... ..+||++|+.++. .+.++..
T Consensus 232 i~dl~tg~~~--~l~~~~---g~~~~~~wSPDG~~La~~~~~~g--~~~Iy~~d~~~~~--------------~~~lt~~ 290 (429)
T PRK01742 232 VHDLRSGARK--VVASFR---GHNGAPAFSPDGSRLAFASSKDG--VLNIYVMGANGGT--------------PSQLTSG 290 (429)
T ss_pred EEeCCCCceE--EEecCC---CccCceeECCCCCEEEEEEecCC--cEEEEEEECCCCC--------------eEeeccC
Confidence 9999876432 232221 12236899999999999865433 4679999987642 3445443
Q ss_pred ccc-eEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecCC-EEEEEEecCCeeEEEEEe
Q 004766 302 FDA-QYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLN-QMIVSYLSDVKYVLQIRD 379 (732)
Q Consensus 302 ~~~-~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~-~l~~~~~~~g~~~l~~~d 379 (732)
... ....|+|||+.|+|.+++++ ..+||.++..++. ..++... . ....+++++ .+++... ..++++|
T Consensus 291 ~~~~~~~~wSpDG~~i~f~s~~~g-~~~I~~~~~~~~~--~~~l~~~--~--~~~~~SpDG~~ia~~~~----~~i~~~D 359 (429)
T PRK01742 291 AGNNTEPSWSPDGQSILFTSDRSG-SPQVYRMSASGGG--ASLVGGR--G--YSAQISADGKTLVMING----DNVVKQD 359 (429)
T ss_pred CCCcCCEEECCCCCEEEEEECCCC-CceEEEEECCCCC--eEEecCC--C--CCccCCCCCCEEEEEcC----CCEEEEE
Confidence 222 22469999999999887654 4689999987665 2333332 1 235677654 4555433 3577899
Q ss_pred CCCCceeeecccccceeeEeecccCCcEEEEEEecCCCCceEEEEECCC
Q 004766 380 LKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKT 428 (732)
Q Consensus 380 ~~~g~~~~~l~~~~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~ 428 (732)
+.+|+. +.++.. .....++++|||..++++.. ...-..++.++...
T Consensus 360 l~~g~~-~~lt~~-~~~~~~~~sPdG~~i~~~s~-~g~~~~l~~~~~~G 405 (429)
T PRK01742 360 LTSGST-EVLSST-FLDESPSISPNGIMIIYSST-QGLGKVLQLVSADG 405 (429)
T ss_pred CCCCCe-EEecCC-CCCCCceECCCCCEEEEEEc-CCCceEEEEEECCC
Confidence 987765 444322 22345678899997776543 23334455555443
|
|
| >PF02230 Abhydrolase_2: Phospholipase/Carboxylesterase; InterPro: IPR003140 This entry represents the alpha/beta hydrolase domain found in phospholipases [], carboxylesterases [] and thioesterases | Back alignment and domain information |
|---|
Probab=99.62 E-value=9.9e-15 Score=143.51 Aligned_cols=190 Identities=13% Similarity=0.090 Sum_probs=112.5
Q ss_pred CCccEEEEEcCCCCccCCCCcChhHHH-HHHhcCcEEEEEcccC------CCCCchhHHhcccccCCc-cHHHHHH----
Q 004766 479 GSHPCLLYGYGGFNISVTPSFSVSRTI-LMRHLGAVFCIANIRG------GGEYGEEWHKGGALAKKQ-NCFDDFI---- 546 (732)
Q Consensus 479 ~~~P~vv~~hG~~~~~~~~~~~~~~~~-~l~~~G~~v~~~~~rG------~g~~g~~~~~~~~~~~~~-~~~~D~~---- 546 (732)
...|+||++||..... ........ .+......++.++.+- +|..+..|+......... ...+++.
T Consensus 12 ~~~~lvi~LHG~G~~~---~~~~~~~~~~~~~~~~~~i~p~ap~~~~~~~~g~~~~~Wf~~~~~~~~~~~~~~~i~~s~~ 88 (216)
T PF02230_consen 12 KAKPLVILLHGYGDSE---DLFALLAELNLALPNTRFISPRAPSRPVTVPGGYRMPAWFDIYDFDPEGPEDEAGIEESAE 88 (216)
T ss_dssp T-SEEEEEE--TTS-H---HHHHHHHHHHTCSTTEEEEEE---EEE-GGGTT-EEE-SS-BSCSSSSSEB-HHHHHHHHH
T ss_pred CCceEEEEECCCCCCc---chhHHHHhhcccCCceEEEeccCCCCCcccccccCCCceeeccCCCcchhhhHHHHHHHHH
Confidence 5789999999964432 11111111 1223567787776542 122233787643222211 2223332
Q ss_pred ---HHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCcccccccccCCCCCccccccCCCCCHHHH
Q 004766 547 ---SASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHAWVSDFGCSEEEEEF 623 (732)
Q Consensus 547 ---~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~~~~~~~g~p~~~~~~ 623 (732)
+.++.+++.+ ++++||.+.|+|+||.|++.++.++|+.|+++|+.+|.+-... .+ .
T Consensus 89 ~l~~li~~~~~~~-i~~~ri~l~GFSQGa~~al~~~l~~p~~~~gvv~lsG~~~~~~--------~~---------~--- 147 (216)
T PF02230_consen 89 RLDELIDEEVAYG-IDPSRIFLGGFSQGAAMALYLALRYPEPLAGVVALSGYLPPES--------EL---------E--- 147 (216)
T ss_dssp HHHHHHHHHHHTT---GGGEEEEEETHHHHHHHHHHHCTSSTSSEEEEES---TTGC--------CC---------H---
T ss_pred HHHHHHHHHHHcC-CChhheehhhhhhHHHHHHHHHHHcCcCcCEEEEeeccccccc--------cc---------c---
Confidence 2333334444 8999999999999999999999999999999999888653210 00 0
Q ss_pred HHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeCCCCCC
Q 004766 624 YWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHG 703 (732)
Q Consensus 624 ~~~~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~ 703 (732)
..... ...+|+|++||.+|+.||+..+.+.++.|++. +.+++++.|++.||.
T Consensus 148 ---------~~~~~---------~~~~pi~~~hG~~D~vvp~~~~~~~~~~L~~~----------~~~v~~~~~~g~gH~ 199 (216)
T PF02230_consen 148 ---------DRPEA---------LAKTPILIIHGDEDPVVPFEWAEKTAEFLKAA----------GANVEFHEYPGGGHE 199 (216)
T ss_dssp ---------CCHCC---------CCTS-EEEEEETT-SSSTHHHHHHHHHHHHCT----------T-GEEEEEETT-SSS
T ss_pred ---------ccccc---------cCCCcEEEEecCCCCcccHHHHHHHHHHHHhc----------CCCEEEEEcCCCCCC
Confidence 00111 13579999999999999999999999999988 889999999999998
Q ss_pred CCCchHHHHHHHHHHHHHHHHHh
Q 004766 704 VGLPTQKMIDEAADRYGFMAKML 726 (732)
Q Consensus 704 ~~~~~~~~~~~~~~~~~fl~~~l 726 (732)
... +++..+.+||.+++
T Consensus 200 i~~------~~~~~~~~~l~~~~ 216 (216)
T PF02230_consen 200 ISP------EELRDLREFLEKHI 216 (216)
T ss_dssp --H------HHHHHHHHHHHHH-
T ss_pred CCH------HHHHHHHHHHhhhC
Confidence 752 45567788988764
|
; GO: 0016787 hydrolase activity; PDB: 3U0V_A 1AUR_A 1AUO_B 1FJ2_B 3CN9_A 3CN7_A. |
| >COG2267 PldB Lysophospholipase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.5e-14 Score=145.31 Aligned_cols=249 Identities=13% Similarity=0.068 Sum_probs=158.2
Q ss_pred EEEEEEccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHh
Q 004766 452 HQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHK 531 (732)
Q Consensus 452 ~~~~~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~ 531 (732)
.+..+.+.|| +.+.+....+.. .+..+||.+||...... .|.. +...|..+||.|+..|.||.|...+ .
T Consensus 10 ~~~~~~~~d~-~~~~~~~~~~~~----~~~g~Vvl~HG~~Eh~~--ry~~-la~~l~~~G~~V~~~D~RGhG~S~r--~- 78 (298)
T COG2267 10 TEGYFTGADG-TRLRYRTWAAPE----PPKGVVVLVHGLGEHSG--RYEE-LADDLAARGFDVYALDLRGHGRSPR--G- 78 (298)
T ss_pred ccceeecCCC-ceEEEEeecCCC----CCCcEEEEecCchHHHH--HHHH-HHHHHHhCCCEEEEecCCCCCCCCC--C-
Confidence 3456777899 999888776653 23389999999765431 2322 3456666999999999999998754 1
Q ss_pred cccccCCccHHHHHHHHHHHHHHcCC--CCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCcccccc---ccc---
Q 004766 532 GGALAKKQNCFDDFISASEYLISAGY--TQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLR---YHK--- 603 (732)
Q Consensus 532 ~~~~~~~~~~~~D~~~~~~~l~~~~~--~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~---~~~--- 603 (732)
.......|+|.+..++.+++.-. .-..++.++||||||+++..++.+++..+.++|+.+|++.+.. ...
T Consensus 79 ---~rg~~~~f~~~~~dl~~~~~~~~~~~~~~p~~l~gHSmGg~Ia~~~~~~~~~~i~~~vLssP~~~l~~~~~~~~~~~ 155 (298)
T COG2267 79 ---QRGHVDSFADYVDDLDAFVETIAEPDPGLPVFLLGHSMGGLIALLYLARYPPRIDGLVLSSPALGLGGAILRLILAR 155 (298)
T ss_pred ---CcCCchhHHHHHHHHHHHHHHHhccCCCCCeEEEEeCcHHHHHHHHHHhCCccccEEEEECccccCChhHHHHHHHH
Confidence 11222336666666665554421 1236899999999999999999999999999999999988762 100
Q ss_pred --CCCCCccccc---------cCCC----CCHHHHHHHHhcCcccCCCC------------CC-CCCCCCCCCCCeEEEE
Q 004766 604 --FTIGHAWVSD---------FGCS----EEEEEFYWLIKYSPLHNVRR------------PW-EQNPDKPFQYPSTLLL 655 (732)
Q Consensus 604 --~~~~~~~~~~---------~g~p----~~~~~~~~~~~~sp~~~~~~------------~~-~~~~~~~~~~~p~Li~ 655 (732)
......+... .... .+++..+.+.+ +|+-.... .. ...+.+..+..|+||+
T Consensus 156 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~sr~~~~~~~~~~-dP~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~PvLll 234 (298)
T COG2267 156 LALKLLGRIRPKLPVDSNLLEGVLTDDLSRDPAEVAAYEA-DPLIGVGGPVSRWVDLALLAGRVPALRDAPAIALPVLLL 234 (298)
T ss_pred HhcccccccccccccCcccccCcCcchhhcCHHHHHHHhc-CCccccCCccHHHHHHHHHhhcccchhccccccCCEEEE
Confidence 0000000000 0001 23333332222 33200000 00 0001122478899999
Q ss_pred eeCCCCCCC-chHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeCCCCCCCCCchHH-HHHHHHHHHHHHHHHhC
Q 004766 656 TADHDDRVV-PLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQK-MIDEAADRYGFMAKMLG 727 (732)
Q Consensus 656 ~g~~D~~v~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~-~~~~~~~~~~fl~~~l~ 727 (732)
+|.+|..|+ .....++++++.. ..+.+++++++.|........ +.+.++++.+||.+++.
T Consensus 235 ~g~~D~vv~~~~~~~~~~~~~~~------------~~~~~~~~~g~~He~~~E~~~~r~~~~~~~~~~l~~~~~ 296 (298)
T COG2267 235 QGGDDRVVDNVEGLARFFERAGS------------PDKELKVIPGAYHELLNEPDRAREEVLKDILAWLAEALP 296 (298)
T ss_pred ecCCCccccCcHHHHHHHHhcCC------------CCceEEecCCcchhhhcCcchHHHHHHHHHHHHHHhhcc
Confidence 999999999 5766666666542 226999999999997644332 26788889999988764
|
|
| >KOG1515 consensus Arylacetamide deacetylase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1e-13 Score=141.31 Aligned_cols=245 Identities=14% Similarity=0.084 Sum_probs=165.1
Q ss_pred EEEEEEEccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCc---cCCCCcChhHHHHHHhcCcEEEEEcccCCCCCch
Q 004766 451 VHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNI---SVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGE 527 (732)
Q Consensus 451 ~~~~~~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~---~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~ 527 (732)
...+.+. .. ..|+..||.|.......+.|+|||+|||... ...+.|+.....+..+.+.+|+.+|||-..|
T Consensus 63 ~~dv~~~--~~-~~l~vRly~P~~~~~~~~~p~lvyfHGGGf~~~S~~~~~y~~~~~~~a~~~~~vvvSVdYRLAPE--- 136 (336)
T KOG1515|consen 63 SKDVTID--PF-TNLPVRLYRPTSSSSETKLPVLVYFHGGGFCLGSANSPAYDSFCTRLAAELNCVVVSVDYRLAPE--- 136 (336)
T ss_pred eeeeEec--CC-CCeEEEEEcCCCCCcccCceEEEEEeCCccEeCCCCCchhHHHHHHHHHHcCeEEEecCcccCCC---
Confidence 3444443 34 5799999999886544789999999999433 3345566555666677899999999998765
Q ss_pred hHHhcccccCCccHHHHHHHHHHHHHHc----CCCCCCcEEEEecChhHHHHHHHHhhC------CCeeeEEEEcCCccc
Q 004766 528 EWHKGGALAKKQNCFDDFISASEYLISA----GYTQSRKLCIEGGSNGGLLVGACINQR------PDLFGCALAHVGVMD 597 (732)
Q Consensus 528 ~~~~~~~~~~~~~~~~D~~~~~~~l~~~----~~~d~~~i~i~G~S~GG~l~~~~~~~~------p~~f~a~v~~~p~~d 597 (732)
..-+..++|..+|+.|+.++ ..+|++||+|+|-|+||.++..++.+. +-..++.|+..|++.
T Consensus 137 --------h~~Pa~y~D~~~Al~w~~~~~~~~~~~D~~rv~l~GDSaGGNia~~va~r~~~~~~~~~ki~g~ili~P~~~ 208 (336)
T KOG1515|consen 137 --------HPFPAAYDDGWAALKWVLKNSWLKLGADPSRVFLAGDSAGGNIAHVVAQRAADEKLSKPKIKGQILIYPFFQ 208 (336)
T ss_pred --------CCCCccchHHHHHHHHHHHhHHHHhCCCcccEEEEccCccHHHHHHHHHHHhhccCCCcceEEEEEEecccC
Confidence 34466789999999999886 468999999999999999998887753 246799999999987
Q ss_pred ccccccCCCCCccccccCCC-CCHHHHHHH-HhcC---------cccCCCCCCCCC-CCCCCCCCeEEEEeeCCCCCCCc
Q 004766 598 MLRYHKFTIGHAWVSDFGCS-EEEEEFYWL-IKYS---------PLHNVRRPWEQN-PDKPFQYPSTLLLTADHDDRVVP 665 (732)
Q Consensus 598 ~~~~~~~~~~~~~~~~~g~p-~~~~~~~~~-~~~s---------p~~~~~~~~~~~-~~~~~~~~p~Li~~g~~D~~v~~ 665 (732)
.......... +. .-+.+ .....++.+ +.+. |+-|.-.. -.. .......||+||+++..|...
T Consensus 209 ~~~~~~~e~~--~~-~~~~~~~~~~~~~~~w~~~lP~~~~~~~~p~~np~~~-~~~~d~~~~~lp~tlv~~ag~D~L~-- 282 (336)
T KOG1515|consen 209 GTDRTESEKQ--QN-LNGSPELARPKIDKWWRLLLPNGKTDLDHPFINPVGN-SLAKDLSGLGLPPTLVVVAGYDVLR-- 282 (336)
T ss_pred CCCCCCHHHH--Hh-hcCCcchhHHHHHHHHHHhCCCCCCCcCCcccccccc-ccccCccccCCCceEEEEeCchhhh--
Confidence 6544321000 00 00011 111111111 1111 11111110 000 011236788999999999765
Q ss_pred hHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeCCCCCCCC--Cc-hHHHHHHHHHHHHHHHHH
Q 004766 666 LHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVG--LP-TQKMIDEAADRYGFMAKM 725 (732)
Q Consensus 666 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~--~~-~~~~~~~~~~~~~fl~~~ 725 (732)
.+...++++|+++ |.++.+..+++++|++. .+ .....+....+.+|+.+.
T Consensus 283 D~~~~Y~~~Lkk~----------Gv~v~~~~~e~~~H~~~~~~~~~~~a~~~~~~i~~fi~~~ 335 (336)
T KOG1515|consen 283 DEGLAYAEKLKKA----------GVEVTLIHYEDGFHGFHILDPSSKEAHALMDAIVEFIKSN 335 (336)
T ss_pred hhhHHHHHHHHHc----------CCeEEEEEECCCeeEEEecCCchhhHHHHHHHHHHHHhhc
Confidence 6899999999988 99999999999999964 22 234466677777887653
|
|
| >PF02129 Peptidase_S15: X-Pro dipeptidyl-peptidase (S15 family); InterPro: IPR000383 This entry represents a domain found peptidases Xaa-Pro dipeptidyl-peptidase and glutaryl-7-aminocephalosporanic-acid acylase, which belong to MEROPS peptidase families S15 and S45 respectively [] | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.6e-15 Score=151.38 Aligned_cols=213 Identities=17% Similarity=0.204 Sum_probs=136.8
Q ss_pred CCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCcc---CC-CCcChh----HHHHHHhcCcEEEEEcccCCCCCchhHHh
Q 004766 460 DGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNIS---VT-PSFSVS----RTILMRHLGAVFCIANIRGGGEYGEEWHK 531 (732)
Q Consensus 460 dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~---~~-~~~~~~----~~~~l~~~G~~v~~~~~rG~g~~g~~~~~ 531 (732)
|| ++|.+.+++| +....++.|+||..++..... .. ....+. ...++. +||+|++.|.||.|+.+-.|..
T Consensus 1 DG-v~L~adv~~P-~~~~~~~~P~il~~tpY~~~~~~~~~~~~~~~~~~~~~~~~~~-~GY~vV~~D~RG~g~S~G~~~~ 77 (272)
T PF02129_consen 1 DG-VRLAADVYRP-GADGGGPFPVILTRTPYGKGDQTASDLAGANPGPPSARRPFAE-RGYAVVVQDVRGTGGSEGEFDP 77 (272)
T ss_dssp TS--EEEEEEEEE---TTSSSEEEEEEEESSTCTC-HHHHHHTTCHHSHGGGHHHHH-TT-EEEEEE-TTSTTS-S-B-T
T ss_pred CC-CEEEEEEEec-CCCCCCcccEEEEccCcCCCCCcccchhhhhcccchhHHHHHh-CCCEEEEECCcccccCCCcccc
Confidence 79 9999999999 444578999999998854221 00 001110 012445 9999999999999987666543
Q ss_pred cccccCCccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCcccccccccCCCC----
Q 004766 532 GGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIG---- 607 (732)
Q Consensus 532 ~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~---- 607 (732)
. ..+..+|..++|+|+.++.+.+ .|||++|.|++|..+..++.+.|...+|++..++..|+.+......+
T Consensus 78 ~-----~~~e~~D~~d~I~W~~~Qpws~-G~VGm~G~SY~G~~q~~~A~~~~p~LkAi~p~~~~~d~~~~~~~~gG~~~~ 151 (272)
T PF02129_consen 78 M-----SPNEAQDGYDTIEWIAAQPWSN-GKVGMYGISYGGFTQWAAAARRPPHLKAIVPQSGWSDLYRDSIYPGGAFRL 151 (272)
T ss_dssp T-----SHHHHHHHHHHHHHHHHCTTEE-EEEEEEEETHHHHHHHHHHTTT-TTEEEEEEESE-SBTCCTSSEETTEEBC
T ss_pred C-----ChhHHHHHHHHHHHHHhCCCCC-CeEEeeccCHHHHHHHHHHhcCCCCceEEEecccCCcccccchhcCCcccc
Confidence 2 5678899999999999998876 79999999999999999999888899999999999998762110111
Q ss_pred ---Cccc------cccCC-C-CCHHH------------------------H----------HHHHhcCcccCCCCCCCCC
Q 004766 608 ---HAWV------SDFGC-S-EEEEE------------------------F----------YWLIKYSPLHNVRRPWEQN 642 (732)
Q Consensus 608 ---~~~~------~~~g~-p-~~~~~------------------------~----------~~~~~~sp~~~~~~~~~~~ 642 (732)
..|. ..... + ...+. + +++.+.++..++.
T Consensus 152 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~------ 225 (272)
T PF02129_consen 152 GFFAGWEDLQSQQEDPQSRPAPDRDYLRERARYEALGDSPLGRLPRDPPYWDEWLDHPPYDPFWQERSPSERLD------ 225 (272)
T ss_dssp CHHHHHHHHHHHHHHHTCCCCSSSHHHHHHHHHHCHHHHHHHHCHGGTHHHHHHHHT-SSSHHHHTTBHHHHHG------
T ss_pred cchhHHHHHHHHhhcccCCCchhhhhhhhhhhhhhhhhHHHhhhccccHHHHHHHhCCCcCHHHHhCChHHHHh------
Confidence 1220 00000 0 11000 0 1112222222233
Q ss_pred CCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhcCCCCCCCCC-CCEEEEEeCCCCCC
Q 004766 643 PDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQT-NPIIGRIERKAGHG 703 (732)
Q Consensus 643 ~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~gH~ 703 (732)
++..|+|+++|-.|.... ..+.+.+++|++. + ++..|++-| .+|+
T Consensus 226 ----~i~vP~l~v~Gw~D~~~~-~~~~~~~~~l~~~----------~~~~~~Liigp-w~H~ 271 (272)
T PF02129_consen 226 ----KIDVPVLIVGGWYDTLFL-RGALRAYEALRAP----------GSKPQRLIIGP-WTHG 271 (272)
T ss_dssp ----G--SEEEEEEETTCSSTS-HHHHHHHHHHCTT----------STC-EEEEEES-ESTT
T ss_pred ----hCCCCEEEecccCCcccc-hHHHHHHHHhhcC----------CCCCCEEEEeC-CCCC
Confidence 388999999999997777 8999999999876 5 567777754 3564
|
It is also found in hydrolases from the CocE/NonD family. Cocaine esterase (CocE) hydrolyzes cocaine endowing the bacteria with the ability to utilise cocaine as a sole source of carbon and energy []. ; GO: 0004177 aminopeptidase activity, 0006508 proteolysis; PDB: 1LNS_A 3PUI_A 3PUH_B 1JU3_A 3I2I_A 3I2G_A 1JU4_A 3I2K_A 3IDA_A 3I2H_A .... |
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.1e-12 Score=138.92 Aligned_cols=287 Identities=16% Similarity=0.121 Sum_probs=173.5
Q ss_pred eEEEEEeCCCCCceEEeCCCCcCCCCCEEEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecccccc-------
Q 004766 105 SVLYVQDSLDAKAKVLLDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSW------- 177 (732)
Q Consensus 105 ~~l~~r~~~~~~~~~l~D~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~~~------- 177 (732)
..+|+.+...+..+.|.+... .+..+.|||||++|||+.+ .+||++++.++.....+..+
T Consensus 23 ~~y~i~d~~~~~~~~l~~~~~-------~~~~~~~sP~g~~~~~v~~------~nly~~~~~~~~~~~lT~dg~~~i~nG 89 (353)
T PF00930_consen 23 GDYYIYDIETGEITPLTPPPP-------KLQDAKWSPDGKYIAFVRD------NNLYLRDLATGQETQLTTDGEPGIYNG 89 (353)
T ss_dssp EEEEEEETTTTEEEESS-EET-------TBSEEEE-SSSTEEEEEET------TEEEEESSTTSEEEESES--TTTEEES
T ss_pred eeEEEEecCCCceEECcCCcc-------ccccceeecCCCeeEEEec------CceEEEECCCCCeEEeccccceeEEcC
Confidence 345555554444444444311 1348899999999999963 37999999887654333222
Q ss_pred -----------eeeeeEEEEeCCcEEEEEEecCCCCC----CCCCCCCc----c---------cCCcccEEEEEECCCCC
Q 004766 178 -----------FKFSSIAWTHDSKGFFYSRYPAPKEG----KDMDAGTE----T---------DSNLYHEFYYHFLGTKQ 229 (732)
Q Consensus 178 -----------~~~~~~~WspDg~~l~y~~~~~~~~~----~~~~~~~~----~---------~~~~~~~v~~~~lgt~~ 229 (732)
.....+.|||||++|+|.+.++.... ..+..... . +..-..+++++++.++.
T Consensus 90 ~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~ 169 (353)
T PF00930_consen 90 VPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGK 169 (353)
T ss_dssp B--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTC
T ss_pred ccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCc
Confidence 01257889999999999998765321 00111100 0 01112357778887665
Q ss_pred CCCeEEEe-cCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCCCCcEEeeecccc--eE
Q 004766 230 SEDILCWK-DPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDA--QY 306 (732)
Q Consensus 230 ~~~~~v~~-~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~ 306 (732)
...+.+-. ......++..+.|++|++.+++...++......+.++|.+++.+.. ..+....++-. ..
T Consensus 170 ~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~----------~~~e~~~~Wv~~~~~ 239 (353)
T PF00930_consen 170 TTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRV----------VLEETSDGWVDVYDP 239 (353)
T ss_dssp CCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEE----------EEEEESSSSSSSSSE
T ss_pred EEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeE----------EEEecCCcceeeecc
Confidence 43221110 1123567789999999997766665555557889999987754220 01111112211 11
Q ss_pred EEEE-ecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCce-eEEEEecC-CEEEEEEecC--CeeEEEEEeCC
Q 004766 307 EVIA-NDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVL-ESATAVNL-NQMIVSYLSD--VKYVLQIRDLK 381 (732)
Q Consensus 307 ~~~s-~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l-~~~~~~~~-~~l~~~~~~~--g~~~l~~~d~~ 381 (732)
..+. +++..+++++.+++ ..+|+.++.+++. .+.|+... ..+ .-+.+..+ +.|||.+..+ ...+||+++++
T Consensus 240 ~~~~~~~~~~~l~~s~~~G-~~hly~~~~~~~~-~~~lT~G~--~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~ 315 (353)
T PF00930_consen 240 PHFLGPDGNEFLWISERDG-YRHLYLYDLDGGK-PRQLTSGD--WEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLD 315 (353)
T ss_dssp EEE-TTTSSEEEEEEETTS-SEEEEEEETTSSE-EEESS-SS--S-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETT
T ss_pred cccccCCCCEEEEEEEcCC-CcEEEEEcccccc-eeccccCc--eeecccceEcCCCCEEEEEecCCCCCceEEEEEEeC
Confidence 2344 78889988888655 7799999998876 55565544 444 33455543 6788888764 35799999998
Q ss_pred -CCceeeecccccceeeEeecccCCcEEEEEEecCCCCc
Q 004766 382 -NGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPG 419 (732)
Q Consensus 382 -~g~~~~~l~~~~g~v~~~~~s~d~~~l~~~~ss~~~p~ 419 (732)
+|+. +.|+-..+....+++|++++.++..++++.+|+
T Consensus 316 ~~~~~-~~LT~~~~~~~~~~~Spdg~y~v~~~s~~~~P~ 353 (353)
T PF00930_consen 316 SGGEP-KCLTCEDGDHYSASFSPDGKYYVDTYSGPDTPP 353 (353)
T ss_dssp ETTEE-EESSTTSSTTEEEEE-TTSSEEEEEEESSSSCE
T ss_pred CCCCe-EeccCCCCCceEEEECCCCCEEEEEEcCCCCCC
Confidence 5554 788855443346788999999999999999885
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >KOG4391 consensus Predicted alpha/beta hydrolase BEM46 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.9e-14 Score=130.72 Aligned_cols=234 Identities=13% Similarity=0.085 Sum_probs=164.1
Q ss_pred CCceEEEEEEEccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCc
Q 004766 447 SEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYG 526 (732)
Q Consensus 447 ~~~~~~~~~~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g 526 (732)
.++.-+++...++|. +++.++++.-+ ...|+++|.|+.-|.. ..+.+...-+..+.+..|++++|||-|..-
T Consensus 50 ~n~pye~i~l~T~D~-vtL~a~~~~~E-----~S~pTlLyfh~NAGNm--Ghr~~i~~~fy~~l~mnv~ivsYRGYG~S~ 121 (300)
T KOG4391|consen 50 FNMPYERIELRTRDK-VTLDAYLMLSE-----SSRPTLLYFHANAGNM--GHRLPIARVFYVNLKMNVLIVSYRGYGKSE 121 (300)
T ss_pred cCCCceEEEEEcCcc-eeEeeeeeccc-----CCCceEEEEccCCCcc--cchhhHHHHHHHHcCceEEEEEeeccccCC
Confidence 356778899999999 99999999732 4789999999976642 234444445566699999999999966432
Q ss_pred hhHHhcccccCCccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCcccccccccCCC
Q 004766 527 EEWHKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTI 606 (732)
Q Consensus 527 ~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~ 606 (732)
..-.+. .-.-|..++++||..+...|..||.++|.|.||..+..+++.+-++..|+|...-|+.+..+.-...
T Consensus 122 GspsE~-------GL~lDs~avldyl~t~~~~dktkivlfGrSlGGAvai~lask~~~ri~~~ivENTF~SIp~~~i~~v 194 (300)
T KOG4391|consen 122 GSPSEE-------GLKLDSEAVLDYLMTRPDLDKTKIVLFGRSLGGAVAIHLASKNSDRISAIIVENTFLSIPHMAIPLV 194 (300)
T ss_pred CCcccc-------ceeccHHHHHHHHhcCccCCcceEEEEecccCCeeEEEeeccchhheeeeeeechhccchhhhhhee
Confidence 222222 2246899999999999999999999999999999999999998999999999888776643321000
Q ss_pred CCccccccCCCCCHHHHHHHH-hcCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhcCCCCC
Q 004766 607 GHAWVSDFGCSEEEEEFYWLI-KYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLEN 685 (732)
Q Consensus 607 ~~~~~~~~g~p~~~~~~~~~~-~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~ 685 (732)
.-|+..-.+ .+ ..+ .++-+..+.. ...|.|++.|..|..|||-+-++++..--
T Consensus 195 -----~p~~~k~i~-~l-c~kn~~~S~~ki~~----------~~~P~LFiSGlkDelVPP~~Mr~Ly~~c~--------- 248 (300)
T KOG4391|consen 195 -----FPFPMKYIP-LL-CYKNKWLSYRKIGQ----------CRMPFLFISGLKDELVPPVMMRQLYELCP--------- 248 (300)
T ss_pred -----ccchhhHHH-HH-HHHhhhcchhhhcc----------ccCceEEeecCccccCCcHHHHHHHHhCc---------
Confidence 001100000 00 011 2334444443 77899999999999999999888876532
Q ss_pred CCCCCCEEEEEeCCCCCCCCCchHHHHHHHHHHHHHHHHHhC
Q 004766 686 SPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLG 727 (732)
Q Consensus 686 ~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 727 (732)
.....+.+||++.|.-..-. --.++.+-+||.+...
T Consensus 249 ---S~~Krl~eFP~gtHNDT~i~---dGYfq~i~dFlaE~~~ 284 (300)
T KOG4391|consen 249 ---SRTKRLAEFPDGTHNDTWIC---DGYFQAIEDFLAEVVK 284 (300)
T ss_pred ---hhhhhheeCCCCccCceEEe---ccHHHHHHHHHHHhcc
Confidence 22358899999999754321 2344556678877543
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.5e-13 Score=146.48 Aligned_cols=246 Identities=15% Similarity=0.126 Sum_probs=161.9
Q ss_pred CCCCcEEEEEEeccCCceEEEEEEECCCCceecccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCCcccE
Q 004766 140 SEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHE 219 (732)
Q Consensus 140 SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (732)
.+.+.+++|+...++....+|+++|..++........+.....++|||||+.|+|+.... ...+
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~----------------~~~~ 215 (417)
T TIGR02800 152 GAFSTRIAYVSKSGKSRRYELQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFES----------------GKPE 215 (417)
T ss_pred CCcCCEEEEEEEeCCCCcceEEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCC----------------CCcE
Confidence 445788999987654556799999997665433222222246789999999999986432 2357
Q ss_pred EEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCCCCcEEee
Q 004766 220 FYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLI 299 (732)
Q Consensus 220 v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l~ 299 (732)
|+++++.++... .+... ......+.|||||+.|++...... ..+||++++.++. .+.++
T Consensus 216 i~v~d~~~g~~~--~~~~~---~~~~~~~~~spDg~~l~~~~~~~~--~~~i~~~d~~~~~--------------~~~l~ 274 (417)
T TIGR02800 216 IYVQDLATGQRE--KVASF---PGMNGAPAFSPDGSKLAVSLSKDG--NPDIYVMDLDGKQ--------------LTRLT 274 (417)
T ss_pred EEEEECCCCCEE--EeecC---CCCccceEECCCCCEEEEEECCCC--CccEEEEECCCCC--------------EEECC
Confidence 999999876432 22221 122346899999999998765433 4679999988743 23333
Q ss_pred ecccc-eEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecC-CEEEEEEecCCeeEEEE
Q 004766 300 DGFDA-QYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNL-NQMIVSYLSDVKYVLQI 377 (732)
Q Consensus 300 ~~~~~-~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~-~~l~~~~~~~g~~~l~~ 377 (732)
..... ....|+|||++|+|.+++.+ ..+||.+++.++. .+.+.... .....+.|+++ +.+++.....+..+|++
T Consensus 275 ~~~~~~~~~~~s~dg~~l~~~s~~~g-~~~iy~~d~~~~~-~~~l~~~~--~~~~~~~~spdg~~i~~~~~~~~~~~i~~ 350 (417)
T TIGR02800 275 NGPGIDTEPSWSPDGKSIAFTSDRGG-SPQIYMMDADGGE-VRRLTFRG--GYNASPSWSPDGDLIAFVHREGGGFNIAV 350 (417)
T ss_pred CCCCCCCCEEECCCCCEEEEEECCCC-CceEEEEECCCCC-EEEeecCC--CCccCeEECCCCCEEEEEEccCCceEEEE
Confidence 22111 12358999999999888754 4589999998776 55555443 33456677765 45666666666679999
Q ss_pred EeCCCCceeeecccccceeeEeecccCCcEEEEEEecCCCCceEEEEECCCC
Q 004766 378 RDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTE 429 (732)
Q Consensus 378 ~d~~~g~~~~~l~~~~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~ 429 (732)
+|++++.. +.++.. .....+.+++|++.+++...... ...++..+...+
T Consensus 351 ~d~~~~~~-~~l~~~-~~~~~p~~spdg~~l~~~~~~~~-~~~l~~~~~~g~ 399 (417)
T TIGR02800 351 MDLDGGGE-RVLTDT-GLDESPSFAPNGRMILYATTRGG-RGVLGLVSTDGR 399 (417)
T ss_pred EeCCCCCe-EEccCC-CCCCCceECCCCCEEEEEEeCCC-cEEEEEEECCCc
Confidence 99986554 455432 22334567899998887776543 356777775443
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >TIGR00976 /NonD putative hydrolase, CocE/NonD family | Back alignment and domain information |
|---|
Probab=99.58 E-value=3e-14 Score=159.87 Aligned_cols=135 Identities=16% Similarity=0.156 Sum_probs=105.8
Q ss_pred EccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccC-CCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccc
Q 004766 457 PSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISV-TPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGAL 535 (732)
Q Consensus 457 ~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~-~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~ 535 (732)
++.|| ++|.+.++.|++ .++.|+||+.||...... ...+......++.++||+|+++|+||.|+.+..+...
T Consensus 2 ~~~DG-~~L~~~~~~P~~---~~~~P~Il~~~gyg~~~~~~~~~~~~~~~~l~~~Gy~vv~~D~RG~g~S~g~~~~~--- 74 (550)
T TIGR00976 2 PMRDG-TRLAIDVYRPAG---GGPVPVILSRTPYGKDAGLRWGLDKTEPAWFVAQGYAVVIQDTRGRGASEGEFDLL--- 74 (550)
T ss_pred cCCCC-CEEEEEEEecCC---CCCCCEEEEecCCCCchhhccccccccHHHHHhCCcEEEEEeccccccCCCceEec---
Confidence 56899 999999999975 357999999998644321 0112212234455599999999999998776543221
Q ss_pred cCCccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCccccccc
Q 004766 536 AKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRY 601 (732)
Q Consensus 536 ~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~ 601 (732)
.....+|+.++++|+.++.+.+ .||+++|+|+||++++.++.++|+.++|+|+.+++.|+.+.
T Consensus 75 --~~~~~~D~~~~i~~l~~q~~~~-~~v~~~G~S~GG~~a~~~a~~~~~~l~aiv~~~~~~d~~~~ 137 (550)
T TIGR00976 75 --GSDEAADGYDLVDWIAKQPWCD-GNVGMLGVSYLAVTQLLAAVLQPPALRAIAPQEGVWDLYRD 137 (550)
T ss_pred --CcccchHHHHHHHHHHhCCCCC-CcEEEEEeChHHHHHHHHhccCCCceeEEeecCcccchhHh
Confidence 1457799999999999998877 79999999999999999999999999999999999987653
|
This model represents a protein subfamily that includes the cocaine esterase CocE, several glutaryl-7-ACA acylases, and the putative diester hydrolase NonD of Streptomyces griseus (all hydrolases). This family shows extensive, low-level similarity to a family of xaa-pro dipeptidyl-peptidases, and local similarity by PSI-BLAST to many other hydrolases. |
| >PLN02511 hydrolase | Back alignment and domain information |
|---|
Probab=99.57 E-value=5.7e-14 Score=150.32 Aligned_cols=139 Identities=17% Similarity=0.149 Sum_probs=93.1
Q ss_pred EEEEEEEccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHH
Q 004766 451 VHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWH 530 (732)
Q Consensus 451 ~~~~~~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~ 530 (732)
.++..+...|| ..+...++.+.........|+||++||..+.+.. .|.......+.++||.|+++|+||.|+....
T Consensus 71 ~~re~l~~~DG-~~~~ldw~~~~~~~~~~~~p~vvllHG~~g~s~~-~y~~~~~~~~~~~g~~vv~~d~rG~G~s~~~-- 146 (388)
T PLN02511 71 YRRECLRTPDG-GAVALDWVSGDDRALPADAPVLILLPGLTGGSDD-SYVRHMLLRARSKGWRVVVFNSRGCADSPVT-- 146 (388)
T ss_pred eeEEEEECCCC-CEEEEEecCcccccCCCCCCEEEEECCCCCCCCC-HHHHHHHHHHHHCCCEEEEEecCCCCCCCCC--
Confidence 34556677899 8887765543211122457999999998776543 2332232333349999999999998764211
Q ss_pred hcccccCCccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCe--eeEEEEcCCccc
Q 004766 531 KGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDL--FGCALAHVGVMD 597 (732)
Q Consensus 531 ~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~--f~a~v~~~p~~d 597 (732)
..........+|+.+++++|..+ + ...++.++|+|+||.+++.++.++|+. +.++++.++..|
T Consensus 147 --~~~~~~~~~~~Dl~~~i~~l~~~-~-~~~~~~lvG~SlGg~i~~~yl~~~~~~~~v~~~v~is~p~~ 211 (388)
T PLN02511 147 --TPQFYSASFTGDLRQVVDHVAGR-Y-PSANLYAAGWSLGANILVNYLGEEGENCPLSGAVSLCNPFD 211 (388)
T ss_pred --CcCEEcCCchHHHHHHHHHHHHH-C-CCCCEEEEEechhHHHHHHHHHhcCCCCCceEEEEECCCcC
Confidence 00111124568999999999875 2 235899999999999999999999986 666665555444
|
|
| >PRK10985 putative hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.2e-13 Score=144.73 Aligned_cols=240 Identities=12% Similarity=0.051 Sum_probs=140.1
Q ss_pred EEEEEccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhc
Q 004766 453 QVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKG 532 (732)
Q Consensus 453 ~~~~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~ 532 (732)
+..++..|| ..+...+..... .....|+||++||..+.... .|...+...|.++||.|+++|+||.|+.......
T Consensus 33 ~~~~~~~dg-~~~~l~w~~~~~--~~~~~p~vll~HG~~g~~~~-~~~~~~~~~l~~~G~~v~~~d~rG~g~~~~~~~~- 107 (324)
T PRK10985 33 WQRLELPDG-DFVDLAWSEDPA--QARHKPRLVLFHGLEGSFNS-PYAHGLLEAAQKRGWLGVVMHFRGCSGEPNRLHR- 107 (324)
T ss_pred eeEEECCCC-CEEEEecCCCCc--cCCCCCEEEEeCCCCCCCcC-HHHHHHHHHHHHCCCEEEEEeCCCCCCCccCCcc-
Confidence 344667899 777655432221 23457999999998765433 2333344556669999999999998754321111
Q ss_pred ccccCCccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCe--eeEEEEcCCcccccccc--------
Q 004766 533 GALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDL--FGCALAHVGVMDMLRYH-------- 602 (732)
Q Consensus 533 ~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~--f~a~v~~~p~~d~~~~~-------- 602 (732)
.......+|+.++++++.++. ...++.++|+|+||.+++.++.++++. +.++|+.++..++....
T Consensus 108 ---~~~~~~~~D~~~~i~~l~~~~--~~~~~~~vG~S~GG~i~~~~~~~~~~~~~~~~~v~i~~p~~~~~~~~~~~~~~~ 182 (324)
T PRK10985 108 ---IYHSGETEDARFFLRWLQREF--GHVPTAAVGYSLGGNMLACLLAKEGDDLPLDAAVIVSAPLMLEACSYRMEQGFS 182 (324)
T ss_pred ---eECCCchHHHHHHHHHHHHhC--CCCCEEEEEecchHHHHHHHHHhhCCCCCccEEEEEcCCCCHHHHHHHHhhhHH
Confidence 011234689999999998752 235799999999999888888776543 67766666654432100
Q ss_pred ---c--CC--CCC---ccccccCC--CCCH------------------------HHHHHHHhcCcccCCCCCCCCCCCCC
Q 004766 603 ---K--FT--IGH---AWVSDFGC--SEEE------------------------EEFYWLIKYSPLHNVRRPWEQNPDKP 646 (732)
Q Consensus 603 ---~--~~--~~~---~~~~~~g~--p~~~------------------------~~~~~~~~~sp~~~~~~~~~~~~~~~ 646 (732)
. +. ... .-...|.. +.+. ...+++...++...+.+
T Consensus 183 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~~~~~~~g~~~~~~~y~~~~~~~~l~~--------- 253 (324)
T PRK10985 183 RVYQRYLLNLLKANAARKLAAYPGTLPINLAQLKSVRRLREFDDLITARIHGFADAIDYYRQCSALPLLNQ--------- 253 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccccCCHHHHhcCCcHHHHhhhheeccCCCCCHHHHHHHCChHHHHhC---------
Confidence 0 00 000 00000000 1111 11223333444333333
Q ss_pred CCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeCCCCCCCCCc-----hHHHHHHHHHHHHH
Q 004766 647 FQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLP-----TQKMIDEAADRYGF 721 (732)
Q Consensus 647 ~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~-----~~~~~~~~~~~~~f 721 (732)
+..|+|+++|++|+.+++.....+. +. ...+.+.+.+++||...-. ...+.+ ..+.+|
T Consensus 254 -i~~P~lii~g~~D~~~~~~~~~~~~----~~----------~~~~~~~~~~~~GH~~~~~g~~~~~~~w~~--~~~~~~ 316 (324)
T PRK10985 254 -IRKPTLIIHAKDDPFMTHEVIPKPE----SL----------PPNVEYQLTEHGGHVGFVGGTLLKPQMWLE--QRIPDW 316 (324)
T ss_pred -CCCCEEEEecCCCCCCChhhChHHH----Hh----------CCCeEEEECCCCCceeeCCCCCCCCCccHH--HHHHHH
Confidence 7899999999999999876554442 22 2346888899999964321 111222 256788
Q ss_pred HHHHhCC
Q 004766 722 MAKMLGA 728 (732)
Q Consensus 722 l~~~l~~ 728 (732)
+...++.
T Consensus 317 ~~~~~~~ 323 (324)
T PRK10985 317 LTTYLEA 323 (324)
T ss_pred HHHhhcC
Confidence 8766643
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.55 E-value=4.2e-13 Score=142.84 Aligned_cols=245 Identities=18% Similarity=0.132 Sum_probs=159.3
Q ss_pred CCCeeEEEEEeCCCCCceEEeCCCCcCCCCCEEEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecc-ccccee
Q 004766 101 LQPQSVLYVQDSLDAKAKVLLDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEAD-ALSWFK 179 (732)
Q Consensus 101 ~~~~~~l~~r~~~~~~~~~l~D~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~-~~~~~~ 179 (732)
+...+.++..+..+.....+.+...+ +..+.|||||+.++|..-..+.. ..++++|+++|+.... ...+ .
T Consensus 169 ~~~~~~l~~~D~dg~~~~~l~~~~~~-------~~~p~ws~~~~~~~y~~f~~~~~-~~i~~~~l~~g~~~~i~~~~g-~ 239 (425)
T COG0823 169 GPLPYELALGDYDGYNQQKLTDSGSL-------ILTPAWSPDGKKLAYVSFELGGC-PRIYYLDLNTGKRPVILNFNG-N 239 (425)
T ss_pred CCCCceEEEEccCCcceeEecccCcc-------eeccccCcCCCceEEEEEecCCC-ceEEEEeccCCccceeeccCC-c
Confidence 33345566665432333454444333 45789999999999997655432 6899999999873221 2222 2
Q ss_pred eeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEE
Q 004766 180 FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVM 259 (732)
Q Consensus 180 ~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~ 259 (732)
...++|||||++|+|+.... ...+||+.++.+..... +. ...+....+.|||||++|+|
T Consensus 240 ~~~P~fspDG~~l~f~~~rd----------------g~~~iy~~dl~~~~~~~--Lt---~~~gi~~~Ps~spdG~~ivf 298 (425)
T COG0823 240 NGAPAFSPDGSKLAFSSSRD----------------GSPDIYLMDLDGKNLPR--LT---NGFGINTSPSWSPDGSKIVF 298 (425)
T ss_pred cCCccCCCCCCEEEEEECCC----------------CCccEEEEcCCCCccee--cc---cCCccccCccCCCCCCEEEE
Confidence 36799999999999997543 45679999998776332 22 22334458999999999999
Q ss_pred EEecCCcceEEEEEEeCCCCCCCcccccccCCCCCcEEeeeccc-ceEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCC
Q 004766 260 CIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFD-AQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPN 338 (732)
Q Consensus 260 ~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~ 338 (732)
.+.+.. ..+||+++++++. .+.++.... ...+.|+|||+++.|.+..++ ...++..++.++.
T Consensus 299 ~Sdr~G--~p~I~~~~~~g~~--------------~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g-~~~i~~~~~~~~~ 361 (425)
T COG0823 299 TSDRGG--RPQIYLYDLEGSQ--------------VTRLTFSGGGNSNPVWSPDGDKIVFESSSGG-QWDIDKNDLASGG 361 (425)
T ss_pred EeCCCC--CcceEEECCCCCc--------------eeEeeccCCCCcCccCCCCCCEEEEEeccCC-ceeeEEeccCCCC
Confidence 987776 5689999998743 244444332 235679999999999884333 3678888887665
Q ss_pred CceEeccCCCCCceeEEEEecC-CEEEEEEecCCeeEEEEEeCCCCceeeeccccccee
Q 004766 339 DWFEVIPEAERDVLESATAVNL-NQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSV 396 (732)
Q Consensus 339 ~~~~l~~~~~~~~l~~~~~~~~-~~l~~~~~~~g~~~l~~~d~~~g~~~~~l~~~~g~v 396 (732)
.++.+... ...+...+.++ ..+++.....+.+.+...+.. |+..+.+....+.+
T Consensus 362 ~~~~lt~~---~~~e~ps~~~ng~~i~~~s~~~~~~~l~~~s~~-g~~~~~~~~~~~~~ 416 (425)
T COG0823 362 KIRILTST---YLNESPSWAPNGRMIMFSSGQGGGSVLSLVSLD-GRVSRPLPLADGDV 416 (425)
T ss_pred cEEEcccc---ccCCCCCcCCCCceEEEeccCCCCceEEEeecc-ceeEEEEeccCcce
Confidence 44444322 23344556654 445566555566778877765 66544444333444
|
|
| >TIGR01607 PST-A Plasmodium subtelomeric family (PST-A) | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.1e-13 Score=142.95 Aligned_cols=235 Identities=11% Similarity=0.041 Sum_probs=138.6
Q ss_pred EEccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCC-----------------------CcChhHHHHHHhcCc
Q 004766 456 VPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTP-----------------------SFSVSRTILMRHLGA 512 (732)
Q Consensus 456 ~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~-----------------------~~~~~~~~~l~~~G~ 512 (732)
+.+.|| .+|......|+ .+..+|+++||..+..... .|...+...|.++||
T Consensus 2 ~~~~~g-~~l~~~~~~~~-----~~kg~v~i~HG~~eh~~~~~~~~~~~~~~~~~~~~~~~~ry~~y~~~~~~~l~~~G~ 75 (332)
T TIGR01607 2 FRNKDG-LLLKTYSWIVK-----NAIGIIVLIHGLKSHLRLQFLKINAKIVNNDRAVLIDTDNYYIYKDSWIENFNKNGY 75 (332)
T ss_pred ccCCCC-CeEEEeeeecc-----CCeEEEEEECCCchhhhhhhhhcCcccCCCCeeEEEcCCcceEeeHHHHHHHHHCCC
Confidence 567799 99988877764 2457999999965443210 123345667777999
Q ss_pred EEEEEcccCCCCCchhHHhcccccCCccHHHHHHHHHHHHHHc------------------CCCCCCcEEEEecChhHHH
Q 004766 513 VFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISA------------------GYTQSRKLCIEGGSNGGLL 574 (732)
Q Consensus 513 ~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~------------------~~~d~~~i~i~G~S~GG~l 574 (732)
.|+++|.||.|.....-...+....-..-.+|+...++.+.+. .+-....+.++||||||++
T Consensus 76 ~V~~~D~rGHG~S~~~~~~~g~~~~~~~~v~Dl~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~GhSmGg~i 155 (332)
T TIGR01607 76 SVYGLDLQGHGESDGLQNLRGHINCFDDLVYDVIQYMNRINDSIILENETKSDDESYDIVNTKENRLPMYIIGLSMGGNI 155 (332)
T ss_pred cEEEecccccCCCccccccccchhhHHHHHHHHHHHHHHhhhhhccccccccccccccccccccCCCceeEeeccCccHH
Confidence 9999999998864321000110001111234455555544331 1111246999999999999
Q ss_pred HHHHHhhCCC--------eeeEEEEcCCccccccc----------------------c-cCCCCC-ccccccCCCCCHHH
Q 004766 575 VGACINQRPD--------LFGCALAHVGVMDMLRY----------------------H-KFTIGH-AWVSDFGCSEEEEE 622 (732)
Q Consensus 575 ~~~~~~~~p~--------~f~a~v~~~p~~d~~~~----------------------~-~~~~~~-~~~~~~g~p~~~~~ 622 (732)
+..++.++++ .++++|+.+|.+.+... . .+..+. .|.. .++..
T Consensus 156 ~~~~~~~~~~~~~~~~~~~i~g~i~~s~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~-----~~~~~ 230 (332)
T TIGR01607 156 ALRLLELLGKSNENNDKLNIKGCISLSGMISIKSVGSDDSFKFKYFYLPVMNFMSRVFPTFRISKKIRYE-----KSPYV 230 (332)
T ss_pred HHHHHHHhccccccccccccceEEEeccceEEecccCCCcchhhhhHHHHHHHHHHHCCcccccCccccc-----cChhh
Confidence 9988765432 57888877776533110 0 000000 0100 11111
Q ss_pred HHHHHhcCccc----------------------CCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhc
Q 004766 623 FYWLIKYSPLH----------------------NVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLC 680 (732)
Q Consensus 623 ~~~~~~~sp~~----------------------~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~ 680 (732)
.+. ...+|+. .+... ....|+|++||.+|..|++..+.++++++.
T Consensus 231 ~~~-~~~Dp~~~~~~~s~~~~~~l~~~~~~~~~~~~~i--------~~~~P~Lii~G~~D~vv~~~~~~~~~~~~~---- 297 (332)
T TIGR01607 231 NDI-IKFDKFRYDGGITFNLASELIKATDTLDCDIDYI--------PKDIPILFIHSKGDCVCSYEGTVSFYNKLS---- 297 (332)
T ss_pred hhH-HhcCccccCCcccHHHHHHHHHHHHHHHhhHhhC--------CCCCCEEEEEeCCCCccCHHHHHHHHHhcc----
Confidence 110 1112211 11110 125799999999999999999888877654
Q ss_pred CCCCCCCCCCCEEEEEeCCCCCCCCCchHHHHHHHHHHHHHHH
Q 004766 681 TSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMA 723 (732)
Q Consensus 681 ~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~ 723 (732)
...+.++++++++|....... +.+..+.+.+||.
T Consensus 298 --------~~~~~l~~~~g~~H~i~~E~~-~~~v~~~i~~wL~ 331 (332)
T TIGR01607 298 --------ISNKELHTLEDMDHVITIEPG-NEEVLKKIIEWIS 331 (332)
T ss_pred --------CCCcEEEEECCCCCCCccCCC-HHHHHHHHHHHhh
Confidence 234678899999999876543 2467778888874
|
These genes are preferentially located in the subtelomeric regions of the chromosomes of both P. falciparum and P. yoelii. |
| >TIGR03611 RutD pyrimidine utilization protein D | Back alignment and domain information |
|---|
Probab=99.54 E-value=9.4e-14 Score=140.73 Aligned_cols=206 Identities=13% Similarity=0.085 Sum_probs=125.6
Q ss_pred CCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCccHHHHHHHHHHHHHHcCCC
Q 004766 479 GSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYT 558 (732)
Q Consensus 479 ~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~ 558 (732)
...|+||++||..+... .|. .....|. +||.|+++|+||.|...... ....+++|....+..+++. .
T Consensus 11 ~~~~~iv~lhG~~~~~~--~~~-~~~~~l~-~~~~vi~~D~~G~G~S~~~~-------~~~~~~~~~~~~~~~~i~~--~ 77 (257)
T TIGR03611 11 ADAPVVVLSSGLGGSGS--YWA-PQLDVLT-QRFHVVTYDHRGTGRSPGEL-------PPGYSIAHMADDVLQLLDA--L 77 (257)
T ss_pred CCCCEEEEEcCCCcchh--HHH-HHHHHHH-hccEEEEEcCCCCCCCCCCC-------cccCCHHHHHHHHHHHHHH--h
Confidence 35689999999876542 232 3455677 78999999999988653221 1112455555555544443 3
Q ss_pred CCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCccccccc-----------cc-CC------------CCCcccccc
Q 004766 559 QSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRY-----------HK-FT------------IGHAWVSDF 614 (732)
Q Consensus 559 d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~-----------~~-~~------------~~~~~~~~~ 614 (732)
+.+++.++|+|+||+++..++.++|+.++++|+..++...... +. .. ....|....
T Consensus 78 ~~~~~~l~G~S~Gg~~a~~~a~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (257)
T TIGR03611 78 NIERFHFVGHALGGLIGLQLALRYPERLLSLVLINAWSRPDPHTRRCFDVRIALLQHAGPEAYVHAQALFLYPADWISEN 157 (257)
T ss_pred CCCcEEEEEechhHHHHHHHHHHChHHhHHheeecCCCCCChhHHHHHHHHHHHHhccCcchhhhhhhhhhccccHhhcc
Confidence 4568999999999999999999999999998877764432100 00 00 000111100
Q ss_pred CCC------------CC-HHHH---HHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHh
Q 004766 615 GCS------------EE-EEEF---YWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYV 678 (732)
Q Consensus 615 g~p------------~~-~~~~---~~~~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~ 678 (732)
... .. ...+ ..+..++....++ .+..|+|+++|++|..||+.++.++++.+..
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~i~~P~l~i~g~~D~~~~~~~~~~~~~~~~~- 226 (257)
T TIGR03611 158 AARLAADEAHALAHFPGKANVLRRINALEAFDVSARLD----------RIQHPVLLIANRDDMLVPYTQSLRLAAALPN- 226 (257)
T ss_pred chhhhhhhhhcccccCccHHHHHHHHHHHcCCcHHHhc----------ccCccEEEEecCcCcccCHHHHHHHHHhcCC-
Confidence 000 00 0001 1111122222222 3789999999999999999998888776542
Q ss_pred hcCCCCCCCCCCCEEEEEeCCCCCCCCCchHHHHHHHHHHHHHHH
Q 004766 679 LCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMA 723 (732)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~ 723 (732)
..+..++++||....... .+....+.+||.
T Consensus 227 -------------~~~~~~~~~gH~~~~~~~--~~~~~~i~~fl~ 256 (257)
T TIGR03611 227 -------------AQLKLLPYGGHASNVTDP--ETFNRALLDFLK 256 (257)
T ss_pred -------------ceEEEECCCCCCccccCH--HHHHHHHHHHhc
Confidence 367778999999765433 244456677763
|
This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067. |
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.9e-13 Score=143.03 Aligned_cols=202 Identities=17% Similarity=0.127 Sum_probs=136.9
Q ss_pred eCCEEEEEEEcCCCCeeEEEEEeCCCCCceEEeCCCCcCCCCCEEEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCC
Q 004766 89 RGNKYFYFHNTGLQPQSVLYVQDSLDAKAKVLLDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQ 168 (732)
Q Consensus 89 ~g~~~~~~~~~~~~~~~~l~~r~~~~~~~~~l~D~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g 168 (732)
++..+.|.....++. +.+|+.....+..+++++.+... ..++|||||++|||+..+.|+ .+||++|+.++
T Consensus 203 ~~~~~~y~~f~~~~~-~~i~~~~l~~g~~~~i~~~~g~~-------~~P~fspDG~~l~f~~~rdg~--~~iy~~dl~~~ 272 (425)
T COG0823 203 DGKKLAYVSFELGGC-PRIYYLDLNTGKRPVILNFNGNN-------GAPAFSPDGSKLAFSSSRDGS--PDIYLMDLDGK 272 (425)
T ss_pred CCCceEEEEEecCCC-ceEEEEeccCCccceeeccCCcc-------CCccCCCCCCEEEEEECCCCC--ccEEEEcCCCC
Confidence 455555554333331 44677666666666777755443 378999999999999998876 79999999988
Q ss_pred ceecccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEe
Q 004766 169 IVEADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSG 248 (732)
Q Consensus 169 ~~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~ 248 (732)
.....+.......+++|||||+.|+|+++.. +++ +||++++.++..+.+ .+... ....+
T Consensus 273 ~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~---------------G~p-~I~~~~~~g~~~~ri-T~~~~----~~~~p 331 (425)
T COG0823 273 NLPRLTNGFGINTSPSWSPDGSKIVFTSDRG---------------GRP-QIYLYDLEGSQVTRL-TFSGG----GNSNP 331 (425)
T ss_pred cceecccCCccccCccCCCCCCEEEEEeCCC---------------CCc-ceEEECCCCCceeEe-eccCC----CCcCc
Confidence 7433222222236899999999999997543 333 799999987765322 22221 11278
Q ss_pred EEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCCCCcEEeeecccceEEEEEecCCeEEEEeCCCCCCce
Q 004766 249 HVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYK 328 (732)
Q Consensus 249 ~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~ 328 (732)
.|||||++|+|...... ...+...++.++. .++.++.......+.|+++|+.+.|.++.. ....
T Consensus 332 ~~SpdG~~i~~~~~~~g--~~~i~~~~~~~~~-------------~~~~lt~~~~~e~ps~~~ng~~i~~~s~~~-~~~~ 395 (425)
T COG0823 332 VWSPDGDKIVFESSSGG--QWDIDKNDLASGG-------------KIRILTSTYLNESPSWAPNGRMIMFSSGQG-GGSV 395 (425)
T ss_pred cCCCCCCEEEEEeccCC--ceeeEEeccCCCC-------------cEEEccccccCCCCCcCCCCceEEEeccCC-CCce
Confidence 99999999999984422 3667777776642 155566555555567899999999988765 3456
Q ss_pred EEEEeCCCC
Q 004766 329 IIRVDLKEP 337 (732)
Q Consensus 329 l~~~d~~~~ 337 (732)
|+.+++.+.
T Consensus 396 l~~~s~~g~ 404 (425)
T COG0823 396 LSLVSLDGR 404 (425)
T ss_pred EEEeeccce
Confidence 777766554
|
|
| >PF06500 DUF1100: Alpha/beta hydrolase of unknown function (DUF1100); InterPro: IPR010520 Proteins in this entry display esterase activity toward pNP-butyrate [] | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.5e-13 Score=140.08 Aligned_cols=236 Identities=14% Similarity=0.128 Sum_probs=137.9
Q ss_pred CceEEEEEEEccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCch
Q 004766 448 EFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGE 527 (732)
Q Consensus 448 ~~~~~~~~~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~ 527 (732)
.+..+++.++- +| .+|++++..|+. +++.|+||++=|.-+... .+...+...+..+|++++.+|.+|.|+..
T Consensus 162 ~~~i~~v~iP~-eg-~~I~g~LhlP~~---~~p~P~VIv~gGlDs~qe--D~~~l~~~~l~~rGiA~LtvDmPG~G~s~- 233 (411)
T PF06500_consen 162 DYPIEEVEIPF-EG-KTIPGYLHLPSG---EKPYPTVIVCGGLDSLQE--DLYRLFRDYLAPRGIAMLTVDMPGQGESP- 233 (411)
T ss_dssp SSEEEEEEEEE-TT-CEEEEEEEESSS---SS-EEEEEEE--TTS-GG--GGHHHHHCCCHHCT-EEEEE--TTSGGGT-
T ss_pred CCCcEEEEEee-CC-cEEEEEEEcCCC---CCCCCEEEEeCCcchhHH--HHHHHHHHHHHhCCCEEEEEccCCCcccc-
Confidence 45678888886 46 799999999984 478998888755433322 21112223355599999999999988632
Q ss_pred hHHhcccccCCccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCcc-ccccccc--C
Q 004766 528 EWHKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVM-DMLRYHK--F 604 (732)
Q Consensus 528 ~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~-d~~~~~~--~ 604 (732)
.|- ..+....=..++++||.+.+++|.+||+++|.|+||+++.+++..++++++|+|+..|++ ++++-.. .
T Consensus 234 ~~~------l~~D~~~l~~aVLd~L~~~p~VD~~RV~~~G~SfGGy~AvRlA~le~~RlkavV~~Ga~vh~~ft~~~~~~ 307 (411)
T PF06500_consen 234 KWP------LTQDSSRLHQAVLDYLASRPWVDHTRVGAWGFSFGGYYAVRLAALEDPRLKAVVALGAPVHHFFTDPEWQQ 307 (411)
T ss_dssp TT-------S-S-CCHHHHHHHHHHHHSTTEEEEEEEEEEETHHHHHHHHHHHHTTTT-SEEEEES---SCGGH-HHHHT
T ss_pred cCC------CCcCHHHHHHHHHHHHhcCCccChhheEEEEeccchHHHHHHHHhcccceeeEeeeCchHhhhhccHHHHh
Confidence 221 111122235688999999999999999999999999999999987788999998887754 4432110 0
Q ss_pred CCCCc----cccccCCC--CCHHHHHHHHhcCcccC--C-CCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHH
Q 004766 605 TIGHA----WVSDFGCS--EEEEEFYWLIKYSPLHN--V-RRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATM 675 (732)
Q Consensus 605 ~~~~~----~~~~~g~p--~~~~~~~~~~~~sp~~~--~-~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l 675 (732)
..+.- +...+|.. ++......+..+|-... + .+ +..+|+|.+.+.+|+.+|.+...-++..
T Consensus 308 ~~P~my~d~LA~rlG~~~~~~~~l~~el~~~SLk~qGlL~~r---------r~~~plL~i~~~~D~v~P~eD~~lia~~- 377 (411)
T PF06500_consen 308 RVPDMYLDVLASRLGMAAVSDESLRGELNKFSLKTQGLLSGR---------RCPTPLLAINGEDDPVSPIEDSRLIAES- 377 (411)
T ss_dssp TS-HHHHHHHHHHCT-SCE-HHHHHHHGGGGSTTTTTTTTSS----------BSS-EEEEEETT-SSS-HHHHHHHHHT-
T ss_pred cCCHHHHHHHHHHhCCccCCHHHHHHHHHhcCcchhccccCC---------CCCcceEEeecCCCCCCCHHHHHHHHhc-
Confidence 01100 11344533 23333344566665432 2 12 4788999999999999998886554432
Q ss_pred HHhhcCCCCCCCCCCCEEEEEeCCCC-CCCCCchHHHHHHHHHHHHHHHHHh
Q 004766 676 QYVLCTSLENSPQTNPIIGRIERKAG-HGVGLPTQKMIDEAADRYGFMAKML 726 (732)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~g-H~~~~~~~~~~~~~~~~~~fl~~~l 726 (732)
+.+-+...++... |.. .-+.+..++.||...|
T Consensus 378 -------------s~~gk~~~~~~~~~~~g------y~~al~~~~~Wl~~~l 410 (411)
T PF06500_consen 378 -------------STDGKALRIPSKPLHMG------YPQALDEIYKWLEDKL 410 (411)
T ss_dssp -------------BTT-EEEEE-SSSHHHH------HHHHHHHHHHHHHHHH
T ss_pred -------------CCCCceeecCCCccccc------hHHHHHHHHHHHHHhc
Confidence 2222334444333 421 1245567888998876
|
This entry also includes 2,6-dihydropseudooxynicotine hydrolase which has a role in nicotine catabolism by cleaving a C-C bond in 2,6-dihydroxypseudooxyicotine [, ].; PDB: 3OUR_A 3MVE_B 2JBW_C. |
| >COG3509 LpqC Poly(3-hydroxybutyrate) depolymerase [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.51 E-value=5.2e-13 Score=128.83 Aligned_cols=232 Identities=13% Similarity=0.135 Sum_probs=154.2
Q ss_pred CCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhccccc---
Q 004766 460 DGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALA--- 536 (732)
Q Consensus 460 dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~--- 536 (732)
+| .+.+++++.|.+.. +..|+||++||+.++.....-...+..+.+..||.|+.|| ++...|+..+...
T Consensus 43 ~g-~~r~y~l~vP~g~~--~~apLvv~LHG~~~sgag~~~~sg~d~lAd~~gFlV~yPd-----g~~~~wn~~~~~~~~~ 114 (312)
T COG3509 43 NG-LKRSYRLYVPPGLP--SGAPLVVVLHGSGGSGAGQLHGTGWDALADREGFLVAYPD-----GYDRAWNANGCGNWFG 114 (312)
T ss_pred CC-CccceEEEcCCCCC--CCCCEEEEEecCCCChHHhhcccchhhhhcccCcEEECcC-----ccccccCCCcccccCC
Confidence 56 78999999999864 4559999999998775443333356677888999999993 3555554433333
Q ss_pred -----CCccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCcc--cccccccCCCCCc
Q 004766 537 -----KKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVM--DMLRYHKFTIGHA 609 (732)
Q Consensus 537 -----~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~--d~~~~~~~~~~~~ 609 (732)
.+..+...+.+.+..|+.+.-+||+||.|.|.|+||.|+.+++..+|++|.|+...++.. +..++-.-.. .
T Consensus 115 p~~~~~g~ddVgflr~lva~l~~~~gidp~RVyvtGlS~GG~Ma~~lac~~p~~faa~A~VAg~~~~~~a~~~~rp~--~ 192 (312)
T COG3509 115 PADRRRGVDDVGFLRALVAKLVNEYGIDPARVYVTGLSNGGRMANRLACEYPDIFAAIAPVAGLLALGVACTPPRPV--S 192 (312)
T ss_pred cccccCCccHHHHHHHHHHHHHHhcCcCcceEEEEeeCcHHHHHHHHHhcCcccccceeeeecccCCCcccCCCCch--h
Confidence 344567778889999999988999999999999999999999999999999997777654 2212111000 0
Q ss_pred cccccCCCCCHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhcCCC------
Q 004766 610 WVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSL------ 683 (732)
Q Consensus 610 ~~~~~g~p~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~------ 683 (732)
.+..-|. .|+ .+|++-= ..| |-+|..|..|+.....+..+.+-.. +..+
T Consensus 193 ~m~~~G~-~Dp--------~~p~~gG-------------~~~--~g~g~~~~~v~~~~~~~~Waa~ng~-~~~p~~~~~~ 247 (312)
T COG3509 193 VMAFHGT-ADP--------LNPYHGG-------------GVP--IGRGQRDGVVSAADLAARWAAVNGC-QAGPDTAELP 247 (312)
T ss_pred HHHhcCC-CCC--------CCCCCCC-------------Ccc--cccccccccccHHHHHHHHHHhcCC-CCCCcccccC
Confidence 1111222 222 2344331 123 8899999988555555555554332 1111
Q ss_pred --------CCCCCCCCEEEEEeCCCCCCCCCchHH----------HHHHHHHHHHHHHHHh
Q 004766 684 --------ENSPQTNPIIGRIERKAGHGVGLPTQK----------MIDEAADRYGFMAKML 726 (732)
Q Consensus 684 --------~~~~~~~~~~~~~~~~~gH~~~~~~~~----------~~~~~~~~~~fl~~~l 726 (732)
....++.++++..+.+.||.-...... .++....++.|+..+-
T Consensus 248 ~~~~~~~~~~~~~~~~V~~y~i~g~GH~wp~~~~~~~~~~g~~t~~~dat~~iw~Ff~~~~ 308 (312)
T COG3509 248 DVGDGTDYDTCDGNARVELYTIDGGGHTWPGGTQYGPAALGMSTRGFDATERIWRFFRQHR 308 (312)
T ss_pred CCcccceeeccCCCcceEEEEEeCCcccCcCCCCCCcccccccccCcchHHHHHHHHHhcc
Confidence 123457789999999999986532111 2445667888988763
|
|
| >TIGR03100 hydr1_PEP hydrolase, ortholog 1, exosortase system type 1 associated | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.3e-12 Score=131.52 Aligned_cols=245 Identities=11% Similarity=-0.036 Sum_probs=140.7
Q ss_pred EEEEEEccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCC-cChhHHHHHHhcCcEEEEEcccCCCCCchhHH
Q 004766 452 HQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPS-FSVSRTILMRHLGAVFCIANIRGGGEYGEEWH 530 (732)
Q Consensus 452 ~~~~~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~-~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~ 530 (732)
+.+.++. +| ..+.+.++.|.+. +.|.||++|||.+...... ....+...|+++||.|+++|+||.|......
T Consensus 3 ~~~~~~~-~~-~~l~g~~~~p~~~----~~~~vv~i~gg~~~~~g~~~~~~~la~~l~~~G~~v~~~Dl~G~G~S~~~~- 75 (274)
T TIGR03100 3 RALTFSC-EG-ETLVGVLHIPGAS----HTTGVLIVVGGPQYRVGSHRQFVLLARRLAEAGFPVLRFDYRGMGDSEGEN- 75 (274)
T ss_pred eeEEEEc-CC-cEEEEEEEcCCCC----CCCeEEEEeCCccccCCchhHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCC-
Confidence 3466664 57 7899999998642 3467888888765433221 1123345666699999999999988643210
Q ss_pred hcccccCCccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCccccccccc-------
Q 004766 531 KGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHK------- 603 (732)
Q Consensus 531 ~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~------- 603 (732)
.......+|+.+++++|.++- ...++|.++|+|+||++++.++.. +..++++|+..|++.......
T Consensus 76 -----~~~~~~~~d~~~~~~~l~~~~-~g~~~i~l~G~S~Gg~~a~~~a~~-~~~v~~lil~~p~~~~~~~~~~~~~~~~ 148 (274)
T TIGR03100 76 -----LGFEGIDADIAAAIDAFREAA-PHLRRIVAWGLCDAASAALLYAPA-DLRVAGLVLLNPWVRTEAAQAASRIRHY 148 (274)
T ss_pred -----CCHHHHHHHHHHHHHHHHhhC-CCCCcEEEEEECHHHHHHHHHhhh-CCCccEEEEECCccCCcccchHHHHHHH
Confidence 111234689999999998651 122579999999999999888765 568999999988754221100
Q ss_pred ----CCCCCcccccc-CCCCCHHHHHHHHh----cCcccCCCCCC---CCC-CCCCCCCCeEEEEeeCCCCCCCchHH--
Q 004766 604 ----FTIGHAWVSDF-GCSEEEEEFYWLIK----YSPLHNVRRPW---EQN-PDKPFQYPSTLLLTADHDDRVVPLHS-- 668 (732)
Q Consensus 604 ----~~~~~~~~~~~-g~p~~~~~~~~~~~----~sp~~~~~~~~---~~~-~~~~~~~~p~Li~~g~~D~~v~~~~~-- 668 (732)
...+..|...+ |..+.....+.+.. ..|........ ..+ ..-..+..|+|+++|..|...+...-
T Consensus 149 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~P~ll~~g~~D~~~~~~~~~~ 228 (274)
T TIGR03100 149 YLGQLLSADFWRKLLSGEVNLGSSLRGLGDALLKARQKGDEVAHGGLAERMKAGLERFQGPVLFILSGNDLTAQEFADSV 228 (274)
T ss_pred HHHHHhChHHHHHhcCCCccHHHHHHHHHHHHHhhhhcCCCcccchHHHHHHHHHHhcCCcEEEEEcCcchhHHHHHHHh
Confidence 00011121111 11111101111111 21110000000 000 00002678999999999986532210
Q ss_pred ---HHHHHHHHHhhcCCCCCCCCCCCEEEEEeCCCCCCCCCchHHHHHHHHHHHHHHH
Q 004766 669 ---LKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMA 723 (732)
Q Consensus 669 ---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~ 723 (732)
.++.+.+. ...+.+..+++++|....... +.+..+.+.+||.
T Consensus 229 ~~~~~~~~~l~------------~~~v~~~~~~~~~H~l~~e~~-~~~v~~~i~~wL~ 273 (274)
T TIGR03100 229 LGEPAWRGALE------------DPGIERVEIDGADHTFSDRVW-REWVAARTTEWLR 273 (274)
T ss_pred ccChhhHHHhh------------cCCeEEEecCCCCcccccHHH-HHHHHHHHHHHHh
Confidence 22222232 234789999999997755443 3567778889985
|
This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 2, TIGR03101) of the same superfamily. |
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.1e-11 Score=131.34 Aligned_cols=260 Identities=17% Similarity=0.158 Sum_probs=157.3
Q ss_pred CCCCcEEEEEEeccC----CceEEEEEEECCCCceecccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCC
Q 004766 140 SEDAKYLAYALSYSG----SDWATIKLMRIEDQIVEADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSN 215 (732)
Q Consensus 140 SPDG~~la~~~~~~G----~e~~~i~v~dl~~g~~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~ 215 (732)
||||+++++..+... +-...++|+|+++++..+..........+.|||||+.|+|++.
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v~~------------------ 62 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPPPPKLQDAKWSPDGKYIAFVRD------------------ 62 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-EETTBSEEEE-SSSTEEEEEET------------------
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCCccccccceeecCCCeeEEEec------------------
Confidence 899999999875331 2246899999999986554433223478999999999999963
Q ss_pred cccEEEEEECCCCCCCCeEEEecCC--------------C-CeeEEEeEEecCCcEEEEEEecCCc--------------
Q 004766 216 LYHEFYYHFLGTKQSEDILCWKDPE--------------H-PKYIFSGHVTEDGQYLVMCIEENCD-------------- 266 (732)
Q Consensus 216 ~~~~v~~~~lgt~~~~~~~v~~~~~--------------~-~~~~~~~~~SpDg~~l~~~~~~~~~-------------- 266 (732)
..||+.++.++... .|..... + -.....+.|||||++|++..-+...
T Consensus 63 --~nly~~~~~~~~~~--~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~ 138 (353)
T PF00930_consen 63 --NNLYLRDLATGQET--QLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDS 138 (353)
T ss_dssp --TEEEEESSTTSEEE--ESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTE
T ss_pred --CceEEEECCCCCeE--EeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccc
Confidence 24777766544211 1111110 0 0112367899999999997644321
Q ss_pred -----------------ceEEEEEEeCCCCCCCcccccccCCCCCcEEeee--cccceE---EEEEecCCeEE-EEeCCC
Q 004766 267 -----------------PVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLID--GFDAQY---EVIANDDTVFT-FLTNKD 323 (732)
Q Consensus 267 -----------------~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~---~~~s~dg~~l~-~~s~~~ 323 (732)
...++++++++++... ...+.. .....+ ..|++++++|+ ...++.
T Consensus 139 ~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~------------~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~ 206 (353)
T PF00930_consen 139 QYPEVESIRYPKAGDPNPRVSLFVVDLASGKTT------------ELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRD 206 (353)
T ss_dssp SS-EEEEEE--BTTS---EEEEEEEESSSTCCC------------EE---HHHHTSSEEEEEEEEEETTEEEEEEEEETT
T ss_pred cCCcccccccCCCCCcCCceEEEEEECCCCcEE------------EeeeccccCCCccCcccceecCCCcEEEEEEcccC
Confidence 1246677777664310 111110 011111 24899888454 456787
Q ss_pred CCCceEEEEeCCCCCCceEeccCCCCCce---eEEEEe--cCCEEEEEEecCCeeEEEEEeCCCCceeeecccccceeeE
Q 004766 324 APKYKIIRVDLKEPNDWFEVIPEAERDVL---ESATAV--NLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNA 398 (732)
Q Consensus 324 ~~~~~l~~~d~~~~~~~~~l~~~~~~~~l---~~~~~~--~~~~l~~~~~~~g~~~l~~~d~~~g~~~~~l~~~~g~v~~ 398 (732)
.....|+.+|++++. .+.+..+..+..+ ..+.+. +++.+++...++|..+|++++.+++. .+.|+.....|..
T Consensus 207 q~~~~l~~~d~~tg~-~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-~~~lT~G~~~V~~ 284 (353)
T PF00930_consen 207 QNRLDLVLCDASTGE-TRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK-PRQLTSGDWEVTS 284 (353)
T ss_dssp STEEEEEEEEECTTT-CEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE-EEESS-SSS-EEE
T ss_pred CCEEEEEEEECCCCc-eeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccc-eeccccCceeecc
Confidence 778899999998876 2333333322222 234444 34677777779999999999998554 4788866666633
Q ss_pred -eecccCCcEEEEEEecCC-CCceEEEEECC-CCCCceEEEE
Q 004766 399 -ISARREDSVVFISFTSFL-IPGIVYQCNLK-TETPEMKIFR 437 (732)
Q Consensus 399 -~~~s~d~~~l~~~~ss~~-~p~~~y~~d~~-~~~~~~~~l~ 437 (732)
+.++.+++.++|..+... .-..+|++++. ++ ..+.|+
T Consensus 285 i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~--~~~~LT 324 (353)
T PF00930_consen 285 ILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGG--EPKCLT 324 (353)
T ss_dssp EEEEECTSSEEEEEESSGGTTSBEEEEEETTETT--EEEESS
T ss_pred cceEcCCCCEEEEEecCCCCCceEEEEEEeCCCC--CeEecc
Confidence 556788888888776522 23588999998 66 355554
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A | Back alignment and domain information |
|---|
Probab=99.50 E-value=4e-13 Score=123.28 Aligned_cols=145 Identities=14% Similarity=0.159 Sum_probs=104.6
Q ss_pred EEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCccHHHHHHHHHHHHHHcCCCCCCc
Q 004766 483 CLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSRK 562 (732)
Q Consensus 483 ~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~ 562 (732)
+||++||+.+... .|.. +...|+++||.|+.+|+||.+.... ..+..++++++.+. +.++++
T Consensus 1 ~vv~~HG~~~~~~--~~~~-~~~~l~~~G~~v~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~-~~~~~~ 62 (145)
T PF12695_consen 1 VVVLLHGWGGSRR--DYQP-LAEALAEQGYAVVAFDYPGHGDSDG--------------ADAVERVLADIRAG-YPDPDR 62 (145)
T ss_dssp EEEEECTTTTTTH--HHHH-HHHHHHHTTEEEEEESCTTSTTSHH--------------SHHHHHHHHHHHHH-HCTCCE
T ss_pred CEEEECCCCCCHH--HHHH-HHHHHHHCCCEEEEEecCCCCccch--------------hHHHHHHHHHHHhh-cCCCCc
Confidence 5899999876532 3433 3445555899999999999876411 12444444444322 228899
Q ss_pred EEEEecChhHHHHHHHHhhCCCeeeEEEEcCCcccccccccCCCCCccccccCCCCCHHHHHHHHhcCcccCCCCCCCCC
Q 004766 563 LCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQN 642 (732)
Q Consensus 563 i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~sp~~~~~~~~~~~ 642 (732)
|+++|+|+||.++..++.+. ..++++|+..|+ |. .+.+ .+
T Consensus 63 i~l~G~S~Gg~~a~~~~~~~-~~v~~~v~~~~~---------------------~~-~~~~------------~~----- 102 (145)
T PF12695_consen 63 IILIGHSMGGAIAANLAARN-PRVKAVVLLSPY---------------------PD-SEDL------------AK----- 102 (145)
T ss_dssp EEEEEETHHHHHHHHHHHHS-TTESEEEEESES---------------------SG-CHHH------------TT-----
T ss_pred EEEEEEccCcHHHHHHhhhc-cceeEEEEecCc---------------------cc-hhhh------------hc-----
Confidence 99999999999999999987 789999988882 11 0111 11
Q ss_pred CCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeCCCCCC
Q 004766 643 PDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHG 703 (732)
Q Consensus 643 ~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~ 703 (732)
...|+|+++|.+|..+++.+..+++++++ .+.+++++++++|+
T Consensus 103 -----~~~pv~~i~g~~D~~~~~~~~~~~~~~~~-------------~~~~~~~i~g~~H~ 145 (145)
T PF12695_consen 103 -----IRIPVLFIHGENDPLVPPEQVRRLYEALP-------------GPKELYIIPGAGHF 145 (145)
T ss_dssp -----TTSEEEEEEETT-SSSHHHHHHHHHHHHC-------------SSEEEEEETTS-TT
T ss_pred -----cCCcEEEEEECCCCcCCHHHHHHHHHHcC-------------CCcEEEEeCCCcCc
Confidence 46799999999999999999999888775 35799999999995
|
... |
| >PRK00870 haloalkane dehalogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.3e-12 Score=136.14 Aligned_cols=129 Identities=16% Similarity=0.155 Sum_probs=85.5
Q ss_pred eEEEEEEEccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhH
Q 004766 450 HVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEW 529 (732)
Q Consensus 450 ~~~~~~~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~ 529 (732)
..+.+.+...+| .++...+. ..+ ++..|.||++||.++... .|.. ....|.++||.|+++|.||.|.....
T Consensus 20 ~~~~~~~~~~~~-~~~~i~y~-~~G---~~~~~~lvliHG~~~~~~--~w~~-~~~~L~~~gy~vi~~Dl~G~G~S~~~- 90 (302)
T PRK00870 20 APHYVDVDDGDG-GPLRMHYV-DEG---PADGPPVLLLHGEPSWSY--LYRK-MIPILAAAGHRVIAPDLIGFGRSDKP- 90 (302)
T ss_pred CceeEeecCCCC-ceEEEEEE-ecC---CCCCCEEEEECCCCCchh--hHHH-HHHHHHhCCCEEEEECCCCCCCCCCC-
Confidence 445566766677 55554322 222 123578999999765432 3443 34556657999999999998754221
Q ss_pred HhcccccCCccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCC
Q 004766 530 HKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVG 594 (732)
Q Consensus 530 ~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p 594 (732)
......+++++.+.+..++++ .+.+++.++|||+||.++..++.++|++++++|+..+
T Consensus 91 -----~~~~~~~~~~~a~~l~~~l~~--l~~~~v~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~ 148 (302)
T PRK00870 91 -----TRREDYTYARHVEWMRSWFEQ--LDLTDVTLVCQDWGGLIGLRLAAEHPDRFARLVVANT 148 (302)
T ss_pred -----CCcccCCHHHHHHHHHHHHHH--cCCCCEEEEEEChHHHHHHHHHHhChhheeEEEEeCC
Confidence 011123456666655555544 2345899999999999999999999999999987765
|
|
| >TIGR03343 biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.6e-13 Score=141.55 Aligned_cols=214 Identities=16% Similarity=0.021 Sum_probs=121.2
Q ss_pred CccEEEEEcCCCCccCCCC-cChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCccHHHHHHHHHHHHHHcCCC
Q 004766 480 SHPCLLYGYGGFNISVTPS-FSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYT 558 (732)
Q Consensus 480 ~~P~vv~~hG~~~~~~~~~-~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~ 558 (732)
..|.||++||.......+. +...+..+++ .||.|+++|+||.|......... .......+|+.+.++.+
T Consensus 29 ~~~~ivllHG~~~~~~~~~~~~~~~~~l~~-~~~~vi~~D~~G~G~S~~~~~~~---~~~~~~~~~l~~~l~~l------ 98 (282)
T TIGR03343 29 NGEAVIMLHGGGPGAGGWSNYYRNIGPFVD-AGYRVILKDSPGFNKSDAVVMDE---QRGLVNARAVKGLMDAL------ 98 (282)
T ss_pred CCCeEEEECCCCCchhhHHHHHHHHHHHHh-CCCEEEEECCCCCCCCCCCcCcc---cccchhHHHHHHHHHHc------
Confidence 4578999999755432221 1122334445 89999999999987653221000 00001234444444433
Q ss_pred CCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCccccccc------------cc-CCCCC--c---ccccc-CCC--
Q 004766 559 QSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRY------------HK-FTIGH--A---WVSDF-GCS-- 617 (732)
Q Consensus 559 d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~------------~~-~~~~~--~---~~~~~-g~p-- 617 (732)
+.+++.++|+|+||.++..++.++|++++++|+..|....... .. +.... . +...+ -++
T Consensus 99 ~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (282)
T TIGR03343 99 DIEKAHLVGNSMGGATALNFALEYPDRIGKLILMGPGGLGPSLFAPMPMEGIKLLFKLYAEPSYETLKQMLNVFLFDQSL 178 (282)
T ss_pred CCCCeeEEEECchHHHHHHHHHhChHhhceEEEECCCCCCccccccCchHHHHHHHHHhcCCCHHHHHHHHhhCccCccc
Confidence 4569999999999999999999999999999987764210000 00 00000 0 00000 001
Q ss_pred CC--------------HHHHHH-HHh--cCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhc
Q 004766 618 EE--------------EEEFYW-LIK--YSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLC 680 (732)
Q Consensus 618 ~~--------------~~~~~~-~~~--~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~ 680 (732)
.. +..... +.. ..++... +..+....+..|+|+++|.+|..|++..+.++++.+.+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~i~~Pvlli~G~~D~~v~~~~~~~~~~~~~~--- 251 (282)
T TIGR03343 179 ITEELLQGRWENIQRQPEHLKNFLISSQKAPLSTW----DVTARLGEIKAKTLVTWGRDDRFVPLDHGLKLLWNMPD--- 251 (282)
T ss_pred CcHHHHHhHHHHhhcCHHHHHHHHHhccccccccc----hHHHHHhhCCCCEEEEEccCCCcCCchhHHHHHHhCCC---
Confidence 00 111101 110 0111100 00001124788999999999999999988888776653
Q ss_pred CCCCCCCCCCCEEEEEeCCCCCCCCCchHHHHHHHHHHHHHHH
Q 004766 681 TSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMA 723 (732)
Q Consensus 681 ~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~ 723 (732)
+++++++++||.......+ ...+.+.+||.
T Consensus 252 -----------~~~~~i~~agH~~~~e~p~--~~~~~i~~fl~ 281 (282)
T TIGR03343 252 -----------AQLHVFSRCGHWAQWEHAD--AFNRLVIDFLR 281 (282)
T ss_pred -----------CEEEEeCCCCcCCcccCHH--HHHHHHHHHhh
Confidence 4778899999998654432 44556777874
|
Members of this family are 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase, or HOPD hydrolase, the BphD protein of biphenyl degradation. BphD acts on the product of ring meta-cleavage by BphC. Many species carrying bphC and bphD are capable of degrading polychlorinated biphenyls as well as biphenyl itself. |
| >COG0400 Predicted esterase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.1e-12 Score=124.80 Aligned_cols=187 Identities=17% Similarity=0.093 Sum_probs=128.9
Q ss_pred CCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCc---hhHHhcccccCC--ccHHHHHHHHHHHH
Q 004766 478 DGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYG---EEWHKGGALAKK--QNCFDDFISASEYL 552 (732)
Q Consensus 478 ~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g---~~~~~~~~~~~~--~~~~~D~~~~~~~l 552 (732)
+...|+||+.||..+. ...|.+ +..++. -...++.++-+=.=+.+ ..|...+..+.+ ......+.+.++.+
T Consensus 15 ~p~~~~iilLHG~Ggd--e~~~~~-~~~~~~-P~~~~is~rG~v~~~g~~~~f~~~~~~~~d~edl~~~~~~~~~~l~~~ 90 (207)
T COG0400 15 DPAAPLLILLHGLGGD--ELDLVP-LPELIL-PNATLVSPRGPVAENGGPRFFRRYDEGSFDQEDLDLETEKLAEFLEEL 90 (207)
T ss_pred CCCCcEEEEEecCCCC--hhhhhh-hhhhcC-CCCeEEcCCCCccccCcccceeecCCCccchhhHHHHHHHHHHHHHHH
Confidence 4567899999997643 334444 334444 45666655443221222 233333332211 12234555666666
Q ss_pred HHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCcccccccccCCCCCccccccCCCCCHHHHHHHHhcCcc
Q 004766 553 ISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHAWVSDFGCSEEEEEFYWLIKYSPL 632 (732)
Q Consensus 553 ~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~sp~ 632 (732)
+++.-+|++|+.+.|+|+|+.+++.++.++|++|+++|+..|..-... .
T Consensus 91 ~~~~gi~~~~ii~~GfSqGA~ial~~~l~~~~~~~~ail~~g~~~~~~-----------------~-------------- 139 (207)
T COG0400 91 AEEYGIDSSRIILIGFSQGANIALSLGLTLPGLFAGAILFSGMLPLEP-----------------E-------------- 139 (207)
T ss_pred HHHhCCChhheEEEecChHHHHHHHHHHhCchhhccchhcCCcCCCCC-----------------c--------------
Confidence 777678899999999999999999999999999999998888542100 0
Q ss_pred cCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeCCCCCCCCCchHHHH
Q 004766 633 HNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMI 712 (732)
Q Consensus 633 ~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~ 712 (732)
.... ...+|+|++||..|++||..++.++.+.|++. |..++.+.++ .||....
T Consensus 140 -~~~~---------~~~~pill~hG~~Dpvvp~~~~~~l~~~l~~~----------g~~v~~~~~~-~GH~i~~------ 192 (207)
T COG0400 140 -LLPD---------LAGTPILLSHGTEDPVVPLALAEALAEYLTAS----------GADVEVRWHE-GGHEIPP------ 192 (207)
T ss_pred -cccc---------cCCCeEEEeccCcCCccCHHHHHHHHHHHHHc----------CCCEEEEEec-CCCcCCH------
Confidence 0111 14679999999999999999999999999988 9999999998 9998854
Q ss_pred HHHHHHHHHHHHHh
Q 004766 713 DEAADRYGFMAKML 726 (732)
Q Consensus 713 ~~~~~~~~fl~~~l 726 (732)
++.+.+..|+...+
T Consensus 193 e~~~~~~~wl~~~~ 206 (207)
T COG0400 193 EELEAARSWLANTL 206 (207)
T ss_pred HHHHHHHHHHHhcc
Confidence 33445666877654
|
|
| >PF12715 Abhydrolase_7: Abhydrolase family; PDB: 3NUZ_C 3G8Y_A | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.2e-14 Score=144.87 Aligned_cols=143 Identities=17% Similarity=0.148 Sum_probs=90.8
Q ss_pred CCCceEEEEEEEccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccC----CCC--------c---ChhHHHHHHhc
Q 004766 446 RSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISV----TPS--------F---SVSRTILMRHL 510 (732)
Q Consensus 446 ~~~~~~~~~~~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~----~~~--------~---~~~~~~~l~~~ 510 (732)
.+.|..|++.|.+.++ ..+|++++.|++. .++.|+||.+||..+... .+. + ...+...|+++
T Consensus 83 rdGY~~EKv~f~~~p~-~~vpaylLvPd~~--~~p~PAVL~lHgHg~~Ke~~~g~~gv~~~~~~~~~~~~~~~g~~LAk~ 159 (390)
T PF12715_consen 83 RDGYTREKVEFNTTPG-SRVPAYLLVPDGA--KGPFPAVLCLHGHGGGKEKMAGEDGVSPDLKDDYDDPKQDYGDQLAKR 159 (390)
T ss_dssp ETTEEEEEEEE--STT-B-EEEEEEEETT----S-EEEEEEE--TT--HHHHCT---SSGCG--STTSTTT-HHHHHHTT
T ss_pred cCCeEEEEEEEEccCC-eeEEEEEEecCCC--CCCCCEEEEeCCCCCCcccccCCcccccccchhhccccccHHHHHHhC
Confidence 3568899999988899 9999999999986 589999999998643210 000 1 11234556779
Q ss_pred CcEEEEEcccCCCCCchhH-----------------HhcccccCCccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHH
Q 004766 511 GAVFCIANIRGGGEYGEEW-----------------HKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGL 573 (732)
Q Consensus 511 G~~v~~~~~rG~g~~g~~~-----------------~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~ 573 (732)
||+|+++|.+|-||.|..= ...|..-.+... -|.+.+++||.++..+|++|||++|+|+||+
T Consensus 160 GYVvla~D~~g~GER~~~e~~~~~~~~~~~~la~~~l~lG~S~~G~~~-~ddmr~lDfL~slpeVD~~RIG~~GfSmGg~ 238 (390)
T PF12715_consen 160 GYVVLAPDALGFGERGDMEGAAQGSNYDCQALARNLLMLGRSLAGLMA-WDDMRALDFLASLPEVDPDRIGCMGFSMGGY 238 (390)
T ss_dssp TSEEEEE--TTSGGG-SSCCCTTTTS--HHHHHHHHHHTT--HHHHHH-HHHHHHHHHHCT-TTEEEEEEEEEEEGGGHH
T ss_pred CCEEEEEccccccccccccccccccchhHHHHHHHHHHcCcCHHHHHH-HHHHHHHHHHhcCcccCccceEEEeecccHH
Confidence 9999999999988765410 011111111122 3555699999999999999999999999999
Q ss_pred HHHHHHhhCCCeeeEEEEcC
Q 004766 574 LVGACINQRPDLFGCALAHV 593 (732)
Q Consensus 574 l~~~~~~~~p~~f~a~v~~~ 593 (732)
.++++++. .|+++|+|+..
T Consensus 239 ~a~~LaAL-DdRIka~v~~~ 257 (390)
T PF12715_consen 239 RAWWLAAL-DDRIKATVANG 257 (390)
T ss_dssp HHHHHHHH--TT--EEEEES
T ss_pred HHHHHHHc-chhhHhHhhhh
Confidence 99999999 45777776543
|
|
| >PLN00021 chlorophyllase | Back alignment and domain information |
|---|
Probab=99.48 E-value=5.5e-12 Score=129.68 Aligned_cols=207 Identities=14% Similarity=0.120 Sum_probs=134.2
Q ss_pred eeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCccHH
Q 004766 463 TKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCF 542 (732)
Q Consensus 463 ~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~ 542 (732)
..+|+.++.|.. .+++|+||++||+.+.. ..|. .....|+++||+|+++|++|.+.. .....+
T Consensus 37 ~~~p~~v~~P~~---~g~~PvVv~lHG~~~~~--~~y~-~l~~~Las~G~~VvapD~~g~~~~-----------~~~~~i 99 (313)
T PLN00021 37 PPKPLLVATPSE---AGTYPVLLFLHGYLLYN--SFYS-QLLQHIASHGFIVVAPQLYTLAGP-----------DGTDEI 99 (313)
T ss_pred CCceEEEEeCCC---CCCCCEEEEECCCCCCc--ccHH-HHHHHHHhCCCEEEEecCCCcCCC-----------CchhhH
Confidence 679999999975 47899999999986542 2233 345566779999999999873211 112345
Q ss_pred HHHHHHHHHHHHc--------CCCCCCcEEEEecChhHHHHHHHHhhCCC-----eeeEEEEcCCcccccccccCCCCCc
Q 004766 543 DDFISASEYLISA--------GYTQSRKLCIEGGSNGGLLVGACINQRPD-----LFGCALAHVGVMDMLRYHKFTIGHA 609 (732)
Q Consensus 543 ~D~~~~~~~l~~~--------~~~d~~~i~i~G~S~GG~l~~~~~~~~p~-----~f~a~v~~~p~~d~~~~~~~~~~~~ 609 (732)
+|..++++|+.+. ...|++|++++|||+||+++..++..+++ .|+++|...|+..+.... .+
T Consensus 100 ~d~~~~~~~l~~~l~~~l~~~~~~d~~~v~l~GHS~GG~iA~~lA~~~~~~~~~~~v~ali~ldPv~g~~~~~-~~---- 174 (313)
T PLN00021 100 KDAAAVINWLSSGLAAVLPEGVRPDLSKLALAGHSRGGKTAFALALGKAAVSLPLKFSALIGLDPVDGTSKGK-QT---- 174 (313)
T ss_pred HHHHHHHHHHHhhhhhhcccccccChhheEEEEECcchHHHHHHHhhccccccccceeeEEeecccccccccc-CC----
Confidence 6777777877652 23677999999999999999999998775 578888777765432110 01
Q ss_pred cccccCCCCCHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCC-----CCC----chH-HHHHHHHHHHhh
Q 004766 610 WVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDD-----RVV----PLH-SLKLLATMQYVL 679 (732)
Q Consensus 610 ~~~~~g~p~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~-----~v~----~~~-~~~~~~~l~~~~ 679 (732)
++.. ..+.|- .. .+..|+||+++..|. .+| ... ..+|+++.
T Consensus 175 ---------~p~i----l~~~~~--s~----------~~~~P~liig~g~~~~~~~~~~p~~ap~~~~~~~f~~~~---- 225 (313)
T PLN00021 175 ---------PPPV----LTYAPH--SF----------NLDIPVLVIGTGLGGEPRNPLFPPCAPDGVNHAEFFNEC---- 225 (313)
T ss_pred ---------CCcc----cccCcc--cc----------cCCCCeEEEecCCCcccccccccccCCCCCCHHHHHHhc----
Confidence 1100 111111 11 145799999998764 222 332 36666543
Q ss_pred cCCCCCCCCCCCEEEEEeCCCCCCCC--------------------Cch-HHHHHHHHHHHHHHHHHhCCC
Q 004766 680 CTSLENSPQTNPIIGRIERKAGHGVG--------------------LPT-QKMIDEAADRYGFMAKMLGAS 729 (732)
Q Consensus 680 ~~~~~~~~~~~~~~~~~~~~~gH~~~--------------------~~~-~~~~~~~~~~~~fl~~~l~~~ 729 (732)
..|..+.+.+++||... .++ ..+......+.+||..+|..+
T Consensus 226 ---------~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~~c~~g~~~~~~r~~~~g~~~aFl~~~l~~~ 287 (313)
T PLN00021 226 ---------KAPAVHFVAKDYGHMDMLDDDTSGIRGKITGCMCKNGKPRKPMRRFVGGAVVAFLKAYLEGD 287 (313)
T ss_pred ---------CCCeeeeeecCCCcceeecCCCccccccccccccCCCCchHHHHHHHHHHHHHHHHHHhcCc
Confidence 44778888899999642 111 112334456789999998754
|
|
| >COG2945 Predicted hydrolase of the alpha/beta superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.1e-12 Score=118.13 Aligned_cols=198 Identities=17% Similarity=0.128 Sum_probs=131.4
Q ss_pred EEEEEEccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCC--CccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhH
Q 004766 452 HQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGF--NISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEW 529 (732)
Q Consensus 452 ~~~~~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~--~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~ 529 (732)
.++.+..+-| .+.+..-.++ ....|+.|.+|--+ +.++...-.......|.++||.++.+|+||-|..
T Consensus 5 ~~v~i~Gp~G--~le~~~~~~~----~~~~~iAli~HPHPl~gGtm~nkvv~~la~~l~~~G~atlRfNfRgVG~S---- 74 (210)
T COG2945 5 PTVIINGPAG--RLEGRYEPAK----TPAAPIALICHPHPLFGGTMNNKVVQTLARALVKRGFATLRFNFRGVGRS---- 74 (210)
T ss_pred CcEEecCCcc--cceeccCCCC----CCCCceEEecCCCccccCccCCHHHHHHHHHHHhCCceEEeecccccccc----
Confidence 3455665555 4444433222 25678888877654 3332222223345667779999999999998754
Q ss_pred HhcccccCCccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCcccccccccCCCCCc
Q 004766 530 HKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHA 609 (732)
Q Consensus 530 ~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~~ 609 (732)
+|..+++....+|..+|++||+++.- +..-..+.|+|.|+++++.++.+.|+. ...++..|..+.
T Consensus 75 --~G~fD~GiGE~~Da~aaldW~~~~hp-~s~~~~l~GfSFGa~Ia~~la~r~~e~-~~~is~~p~~~~----------- 139 (210)
T COG2945 75 --QGEFDNGIGELEDAAAALDWLQARHP-DSASCWLAGFSFGAYIAMQLAMRRPEI-LVFISILPPINA----------- 139 (210)
T ss_pred --cCcccCCcchHHHHHHHHHHHHhhCC-CchhhhhcccchHHHHHHHHHHhcccc-cceeeccCCCCc-----------
Confidence 45567778889999999999998853 333357899999999999999987763 344444554431
Q ss_pred cccccCCCCCHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhcCCCCCCCCC
Q 004766 610 WVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQT 689 (732)
Q Consensus 610 ~~~~~g~p~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~ 689 (732)
| .+ | .+.. +-.|.|+++|+.|+.|.+....++.+ +
T Consensus 140 ~-----------df------s---~l~P----------~P~~~lvi~g~~Ddvv~l~~~l~~~~---------------~ 174 (210)
T COG2945 140 Y-----------DF------S---FLAP----------CPSPGLVIQGDADDVVDLVAVLKWQE---------------S 174 (210)
T ss_pred h-----------hh------h---hccC----------CCCCceeEecChhhhhcHHHHHHhhc---------------C
Confidence 0 00 0 0111 34589999999998888776666543 4
Q ss_pred CCEEEEEeCCCCCCCCCchHHHHHHHHHHHHHH
Q 004766 690 NPIIGRIERKAGHGVGLPTQKMIDEAADRYGFM 722 (732)
Q Consensus 690 ~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl 722 (732)
.+..+++.++++|+|.... ......+.+||
T Consensus 175 ~~~~~i~i~~a~HFF~gKl---~~l~~~i~~~l 204 (210)
T COG2945 175 IKITVITIPGADHFFHGKL---IELRDTIADFL 204 (210)
T ss_pred CCCceEEecCCCceecccH---HHHHHHHHHHh
Confidence 5678888899999997533 33344566777
|
|
| >TIGR02427 protocat_pcaD 3-oxoadipate enol-lactonase | Back alignment and domain information |
|---|
Probab=99.46 E-value=6.5e-13 Score=133.73 Aligned_cols=203 Identities=15% Similarity=0.092 Sum_probs=121.5
Q ss_pred CccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCccHHHHHHHHHHHHHHcCCCC
Q 004766 480 SHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQ 559 (732)
Q Consensus 480 ~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d 559 (732)
..|+||++||...... .|. .+...|. +||.|+++|+||.|.... .....+++++.+.+..+++. .+
T Consensus 12 ~~~~li~~hg~~~~~~--~~~-~~~~~l~-~~~~v~~~d~~G~G~s~~--------~~~~~~~~~~~~~~~~~i~~--~~ 77 (251)
T TIGR02427 12 GAPVLVFINSLGTDLR--MWD-PVLPALT-PDFRVLRYDKRGHGLSDA--------PEGPYSIEDLADDVLALLDH--LG 77 (251)
T ss_pred CCCeEEEEcCcccchh--hHH-HHHHHhh-cccEEEEecCCCCCCCCC--------CCCCCCHHHHHHHHHHHHHH--hC
Confidence 5689999999654432 333 3456677 899999999999876421 11233566767666666654 23
Q ss_pred CCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCccccccccc-------CC-CC---------Cccc-cccCCCCCH-
Q 004766 560 SRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHK-------FT-IG---------HAWV-SDFGCSEEE- 620 (732)
Q Consensus 560 ~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~-------~~-~~---------~~~~-~~~g~p~~~- 620 (732)
.+++.++|+|+||+++..++.++|++++++|+..+...+..... .. .+ ..|. ..+..+...
T Consensus 78 ~~~v~liG~S~Gg~~a~~~a~~~p~~v~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (251)
T TIGR02427 78 IERAVFCGLSLGGLIAQGLAARRPDRVRALVLSNTAAKIGTPESWNARIAAVRAEGLAALADAVLERWFTPGFREAHPAR 157 (251)
T ss_pred CCceEEEEeCchHHHHHHHHHHCHHHhHHHhhccCccccCchhhHHHHHhhhhhccHHHHHHHHHHHHcccccccCChHH
Confidence 46899999999999999999999999998887665432111000 00 00 0000 011111100
Q ss_pred -HHHH-HH---------------HhcCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhcCCC
Q 004766 621 -EEFY-WL---------------IKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSL 683 (732)
Q Consensus 621 -~~~~-~~---------------~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~ 683 (732)
+.+. .+ ...+....+. .+..|+|+++|.+|..+|+....++.+.+..
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~Pvlii~g~~D~~~~~~~~~~~~~~~~~------ 221 (251)
T TIGR02427 158 LDLYRNMLVRQPPDGYAGCCAAIRDADFRDRLG----------AIAVPTLCIAGDQDGSTPPELVREIADLVPG------ 221 (251)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHhcccHHHHhh----------hcCCCeEEEEeccCCcCChHHHHHHHHhCCC------
Confidence 0111 00 0011111122 2678999999999999999877776655432
Q ss_pred CCCCCCCCEEEEEeCCCCCCCCCchHHHHHHHHHHHHHH
Q 004766 684 ENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFM 722 (732)
Q Consensus 684 ~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl 722 (732)
..+++++++||.......+ .....+.+||
T Consensus 222 --------~~~~~~~~~gH~~~~~~p~--~~~~~i~~fl 250 (251)
T TIGR02427 222 --------ARFAEIRGAGHIPCVEQPE--AFNAALRDFL 250 (251)
T ss_pred --------ceEEEECCCCCcccccChH--HHHHHHHHHh
Confidence 4778889999987543322 3333445554
|
Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate. |
| >TIGR03056 bchO_mg_che_rel putative magnesium chelatase accessory protein | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.3e-12 Score=131.26 Aligned_cols=207 Identities=12% Similarity=0.003 Sum_probs=123.6
Q ss_pred CccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCccHHHHHHHHHHHHHHcCCCC
Q 004766 480 SHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQ 559 (732)
Q Consensus 480 ~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d 559 (732)
..|+||++||..+... .|.. +...|+ ++|.|+++|+||.|...... ....+++++.+.+..+++. .+
T Consensus 27 ~~~~vv~~hG~~~~~~--~~~~-~~~~l~-~~~~vi~~D~~G~G~S~~~~-------~~~~~~~~~~~~l~~~i~~--~~ 93 (278)
T TIGR03056 27 AGPLLLLLHGTGASTH--SWRD-LMPPLA-RSFRVVAPDLPGHGFTRAPF-------RFRFTLPSMAEDLSALCAA--EG 93 (278)
T ss_pred CCCeEEEEcCCCCCHH--HHHH-HHHHHh-hCcEEEeecCCCCCCCCCcc-------ccCCCHHHHHHHHHHHHHH--cC
Confidence 3589999999866532 3433 455677 68999999999987542211 1124567777766666654 23
Q ss_pred CCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCccccccc-c-----------c-CCC-----------CCcccccc-
Q 004766 560 SRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRY-H-----------K-FTI-----------GHAWVSDF- 614 (732)
Q Consensus 560 ~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~-~-----------~-~~~-----------~~~~~~~~- 614 (732)
.+++.++|+|+||.+++.++.++|++.+++|+..+....... . . ... ...+...+
T Consensus 94 ~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (278)
T TIGR03056 94 LSPDGVIGHSAGAAIALRLALDGPVTPRMVVGINAALMPFEGMAGTLFPYMARVLACNPFTPPMMSRGAADQQRVERLIR 173 (278)
T ss_pred CCCceEEEECccHHHHHHHHHhCCcccceEEEEcCcccccccccccccchhhHhhhhcccchHHHHhhcccCcchhHHhh
Confidence 357899999999999999999999988888877664332110 0 0 000 00000000
Q ss_pred --CCCCCHHHHHHH-----------------HhcCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHH
Q 004766 615 --GCSEEEEEFYWL-----------------IKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATM 675 (732)
Q Consensus 615 --g~p~~~~~~~~~-----------------~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l 675 (732)
+...++.....+ ..++...... ....+..|+|+++|.+|..||+..+..+.+.+
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~i~~P~lii~g~~D~~vp~~~~~~~~~~~ 246 (278)
T TIGR03056 174 DTGSLLDKAGMTYYGRLIRSPAHVDGALSMMAQWDLAPLNR-------DLPRITIPLHLIAGEEDKAVPPDESKRAATRV 246 (278)
T ss_pred ccccccccchhhHHHHhhcCchhhhHHHHHhhcccccchhh-------hcccCCCCEEEEEeCCCcccCHHHHHHHHHhc
Confidence 010011111101 0111000000 01137789999999999999998887776554
Q ss_pred HHhhcCCCCCCCCCCCEEEEEeCCCCCCCCCchHHHHHHHHHHHHHH
Q 004766 676 QYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFM 722 (732)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl 722 (732)
.+ .++.+++++||.+..... .+....+.+|+
T Consensus 247 ~~--------------~~~~~~~~~gH~~~~e~p--~~~~~~i~~f~ 277 (278)
T TIGR03056 247 PT--------------ATLHVVPGGGHLVHEEQA--DGVVGLILQAA 277 (278)
T ss_pred cC--------------CeEEEECCCCCcccccCH--HHHHHHHHHHh
Confidence 42 377888999998765432 24555666665
|
Members of this family belong to the alpha/beta fold family hydrolases (PFAM model pfam00561). Members are found in bacterial genomes if and only if they encoded for anoxygenic photosynthetic systems similar to that of Rhodobacter capsulatus and other alpha-Proteobacteria. Members often are encoded in the same operon as subunits of the protoporphyrin IX magnesium chelatase, and were once designated BchO. No literature supports a role as an actual subunit of magnesium chelatase, but an accessory role is possible, as suggested by placement by its probable hydrolase activity. |
| >COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.9e-12 Score=125.19 Aligned_cols=239 Identities=14% Similarity=0.079 Sum_probs=145.5
Q ss_pred EEEccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhccc
Q 004766 455 FVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGA 534 (732)
Q Consensus 455 ~~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~ 534 (732)
.+..+||..-.-.|..-|.+ ...|+||..||--|++.++ |...+...+.++||.++++|.||.++.-.. ..
T Consensus 53 ~v~~pdg~~~~ldw~~~p~~----~~~P~vVl~HGL~G~s~s~-y~r~L~~~~~~rg~~~Vv~~~Rgcs~~~n~----~p 123 (345)
T COG0429 53 RLETPDGGFIDLDWSEDPRA----AKKPLVVLFHGLEGSSNSP-YARGLMRALSRRGWLVVVFHFRGCSGEANT----SP 123 (345)
T ss_pred EEEcCCCCEEEEeeccCccc----cCCceEEEEeccCCCCcCH-HHHHHHHHHHhcCCeEEEEecccccCCccc----Cc
Confidence 44455661333344443443 4569999999988887766 666666777779999999999997753110 01
Q ss_pred ccCCccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhH-HHHHHHHhhC--CCeeeEEEEcCCcccccc-cccCCC----
Q 004766 535 LAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGG-LLVGACINQR--PDLFGCALAHVGVMDMLR-YHKFTI---- 606 (732)
Q Consensus 535 ~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG-~l~~~~~~~~--p~~f~a~v~~~p~~d~~~-~~~~~~---- 606 (732)
........+|+..++++|.+++. +.++.++|.|+|| +|+..+.-+. +-.-+|++..+|+ |+.. ...+..
T Consensus 124 ~~yh~G~t~D~~~~l~~l~~~~~--~r~~~avG~SLGgnmLa~ylgeeg~d~~~~aa~~vs~P~-Dl~~~~~~l~~~~s~ 200 (345)
T COG0429 124 RLYHSGETEDIRFFLDWLKARFP--PRPLYAVGFSLGGNMLANYLGEEGDDLPLDAAVAVSAPF-DLEACAYRLDSGFSL 200 (345)
T ss_pred ceecccchhHHHHHHHHHHHhCC--CCceEEEEecccHHHHHHHHHhhccCcccceeeeeeCHH-HHHHHHHHhcCchhh
Confidence 11122335999999999999765 6799999999999 5555554442 2234444555553 3210 000000
Q ss_pred --------------------------CCc---------cccccCC----C--CCHHHHHHHHhcCcccCCCCCCCCCCCC
Q 004766 607 --------------------------GHA---------WVSDFGC----S--EEEEEFYWLIKYSPLHNVRRPWEQNPDK 645 (732)
Q Consensus 607 --------------------------~~~---------~~~~~g~----p--~~~~~~~~~~~~sp~~~~~~~~~~~~~~ 645 (732)
+.. -..||-+ | .-++..+++++-|++..+.+
T Consensus 201 ~ly~r~l~~~L~~~~~~kl~~l~~~~p~~~~~~ik~~~ti~eFD~~~Tap~~Gf~da~dYYr~aSs~~~L~~-------- 272 (345)
T COG0429 201 RLYSRYLLRNLKRNAARKLKELEPSLPGTVLAAIKRCRTIREFDDLLTAPLHGFADAEDYYRQASSLPLLPK-------- 272 (345)
T ss_pred hhhHHHHHHHHHHHHHHHHHhcCcccCcHHHHHHHhhchHHhccceeeecccCCCcHHHHHHhccccccccc--------
Confidence 000 0011211 1 11234467888899888887
Q ss_pred CCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeCCCCCCCC-C--chHHHHHHHHHHHHHH
Q 004766 646 PFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVG-L--PTQKMIDEAADRYGFM 722 (732)
Q Consensus 646 ~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~-~--~~~~~~~~~~~~~~fl 722 (732)
|..|+||+|+.+|+.+++..--+.-.. . +..++|.+...+||.+. . ..+...=..+++.+||
T Consensus 273 --Ir~PtLii~A~DDP~~~~~~iP~~~~~---~----------np~v~l~~t~~GGHvGfl~~~~~~~~~W~~~ri~~~l 337 (345)
T COG0429 273 --IRKPTLIINAKDDPFMPPEVIPKLQEM---L----------NPNVLLQLTEHGGHVGFLGGKLLHPQMWLEQRILDWL 337 (345)
T ss_pred --cccceEEEecCCCCCCChhhCCcchhc---C----------CCceEEEeecCCceEEeccCccccchhhHHHHHHHHH
Confidence 889999999999999987542222111 1 55689999999999642 1 1111111234678888
Q ss_pred HHHhCC
Q 004766 723 AKMLGA 728 (732)
Q Consensus 723 ~~~l~~ 728 (732)
...+..
T Consensus 338 ~~~~~~ 343 (345)
T COG0429 338 DPFLEA 343 (345)
T ss_pred HHHHhh
Confidence 877643
|
|
| >PRK11071 esterase YqiA; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.2e-12 Score=123.41 Aligned_cols=182 Identities=14% Similarity=-0.007 Sum_probs=113.8
Q ss_pred cEEEEEcCCCCccCCCCcCh-hHHHHHHh--cCcEEEEEcccCCCCCchhHHhcccccCCccHHHHHHHHHHHHHHcCCC
Q 004766 482 PCLLYGYGGFNISVTPSFSV-SRTILMRH--LGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYT 558 (732)
Q Consensus 482 P~vv~~hG~~~~~~~~~~~~-~~~~~l~~--~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~ 558 (732)
|.||++||..++... |.. .+..++.+ .+|.|.++|.||.+ ++..+.++.++++.
T Consensus 2 p~illlHGf~ss~~~--~~~~~~~~~l~~~~~~~~v~~~dl~g~~-------------------~~~~~~l~~l~~~~-- 58 (190)
T PRK11071 2 STLLYLHGFNSSPRS--AKATLLKNWLAQHHPDIEMIVPQLPPYP-------------------ADAAELLESLVLEH-- 58 (190)
T ss_pred CeEEEECCCCCCcch--HHHHHHHHHHHHhCCCCeEEeCCCCCCH-------------------HHHHHHHHHHHHHc--
Confidence 789999997765432 332 23355553 38999999999842 24555556666542
Q ss_pred CCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCcccccccccCCCCCccccccC--CCCCHHHHHHHHhcCcccCCC
Q 004766 559 QSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHAWVSDFG--CSEEEEEFYWLIKYSPLHNVR 636 (732)
Q Consensus 559 d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~~~~~~~g--~p~~~~~~~~~~~~sp~~~~~ 636 (732)
+.+++.++|+|+||+++..++.++|. + +|+..|..+.......-.+.......+ -+-..+.++.++.+.+.. ++
T Consensus 59 ~~~~~~lvG~S~Gg~~a~~~a~~~~~--~-~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-i~ 134 (190)
T PRK11071 59 GGDPLGLVGSSLGGYYATWLSQCFML--P-AVVVNPAVRPFELLTDYLGENENPYTGQQYVLESRHIYDLKVMQIDP-LE 134 (190)
T ss_pred CCCCeEEEEECHHHHHHHHHHHHcCC--C-EEEECCCCCHHHHHHHhcCCcccccCCCcEEEcHHHHHHHHhcCCcc-CC
Confidence 23589999999999999999999884 3 456666666422211001110000011 112234444455554332 22
Q ss_pred CCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeCCCCCCCCCchHHHHHHHH
Q 004766 637 RPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAA 716 (732)
Q Consensus 637 ~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~ 716 (732)
...|+||+||.+|..||+.++.+++++. .+.+.++++|.+... .+...
T Consensus 135 -----------~~~~v~iihg~~De~V~~~~a~~~~~~~-----------------~~~~~~ggdH~f~~~----~~~~~ 182 (190)
T PRK11071 135 -----------SPDLIWLLQQTGDEVLDYRQAVAYYAAC-----------------RQTVEEGGNHAFVGF----ERYFN 182 (190)
T ss_pred -----------ChhhEEEEEeCCCCcCCHHHHHHHHHhc-----------------ceEEECCCCcchhhH----HHhHH
Confidence 3568899999999999999999998742 334669999999653 24455
Q ss_pred HHHHHH
Q 004766 717 DRYGFM 722 (732)
Q Consensus 717 ~~~~fl 722 (732)
.+.+|+
T Consensus 183 ~i~~fl 188 (190)
T PRK11071 183 QIVDFL 188 (190)
T ss_pred HHHHHh
Confidence 667775
|
|
| >PRK03592 haloalkane dehalogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.5e-11 Score=127.54 Aligned_cols=228 Identities=10% Similarity=0.006 Sum_probs=129.8
Q ss_pred CCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCc
Q 004766 460 DGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQ 539 (732)
Q Consensus 460 dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~ 539 (732)
+| .++.+... |..|.||++||.+++.. .|.. ....|.++ |.|+++|.||.|..... ...
T Consensus 15 ~g-~~i~y~~~--------G~g~~vvllHG~~~~~~--~w~~-~~~~L~~~-~~via~D~~G~G~S~~~--------~~~ 73 (295)
T PRK03592 15 LG-SRMAYIET--------GEGDPIVFLHGNPTSSY--LWRN-IIPHLAGL-GRCLAPDLIGMGASDKP--------DID 73 (295)
T ss_pred CC-EEEEEEEe--------CCCCEEEEECCCCCCHH--HHHH-HHHHHhhC-CEEEEEcCCCCCCCCCC--------CCC
Confidence 77 77765432 24478999999876643 3333 34556635 49999999998865322 111
Q ss_pred cHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCcccccc-------------cccCCC
Q 004766 540 NCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLR-------------YHKFTI 606 (732)
Q Consensus 540 ~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~-------------~~~~~~ 606 (732)
.++++..+.+..+++. ...+++.++|+|+||.+++.++.++|++++++|+..++..... ......
T Consensus 74 ~~~~~~a~dl~~ll~~--l~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lil~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (295)
T PRK03592 74 YTFADHARYLDAWFDA--LGLDDVVLVGHDWGSALGFDWAARHPDRVRGIAFMEAIVRPMTWDDFPPAVRELFQALRSPG 151 (295)
T ss_pred CCHHHHHHHHHHHHHH--hCCCCeEEEEECHHHHHHHHHHHhChhheeEEEEECCCCCCcchhhcchhHHHHHHHHhCcc
Confidence 2445555444444443 2236899999999999999999999999999998776321100 000000
Q ss_pred -CCc-------ccc-----ccCCCCCHHHHHHHH-----------------hcCcccCCCCCCC----CCCCCCCCCCeE
Q 004766 607 -GHA-------WVS-----DFGCSEEEEEFYWLI-----------------KYSPLHNVRRPWE----QNPDKPFQYPST 652 (732)
Q Consensus 607 -~~~-------~~~-----~~g~p~~~~~~~~~~-----------------~~sp~~~~~~~~~----~~~~~~~~~~p~ 652 (732)
+.. ... .+.....++....+. +..+......... .......+..|+
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~ 231 (295)
T PRK03592 152 EGEEMVLEENVFIERVLPGSILRPLSDEEMAVYRRPFPTPESRRPTLSWPRELPIDGEPADVVALVEEYAQWLATSDVPK 231 (295)
T ss_pred cccccccchhhHHhhcccCcccccCCHHHHHHHHhhcCCchhhhhhhhhhhhcCCCCcchhhHhhhhHhHHHhccCCCCe
Confidence 000 000 000001111111111 1100000000000 000011378999
Q ss_pred EEEeeCCCCCCCchHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeCCCCCCCCCchHHHHHHHHHHHHHHHHH
Q 004766 653 LLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKM 725 (732)
Q Consensus 653 Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~ 725 (732)
|+++|.+|..+++.+..++...+.. ..++.+.+++||....... .+..+.+.+|+.+.
T Consensus 232 lii~G~~D~~~~~~~~~~~~~~~~~-------------~~~~~~i~~~gH~~~~e~p--~~v~~~i~~fl~~~ 289 (295)
T PRK03592 232 LLINAEPGAILTTGAIRDWCRSWPN-------------QLEITVFGAGLHFAQEDSP--EEIGAAIAAWLRRL 289 (295)
T ss_pred EEEeccCCcccCcHHHHHHHHHhhh-------------hcceeeccCcchhhhhcCH--HHHHHHHHHHHHHh
Confidence 9999999999977666666554432 2477888999999875433 35556778898765
|
|
| >COG4099 Predicted peptidase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.4e-12 Score=124.44 Aligned_cols=201 Identities=15% Similarity=0.110 Sum_probs=132.7
Q ss_pred cCCCeeEEEEEEEcCCCCCCCCc-cEEEEEcCCCCccCCCCcChhHHHHHHhc----------CcEEEEEcccCCCCCch
Q 004766 459 KDGSTKIPMFIVSKKNIKLDGSH-PCLLYGYGGFNISVTPSFSVSRTILMRHL----------GAVFCIANIRGGGEYGE 527 (732)
Q Consensus 459 ~dG~~~i~~~~~~p~~~~~~~~~-P~vv~~hG~~~~~~~~~~~~~~~~~l~~~----------G~~v~~~~~rG~g~~g~ 527 (732)
.-| .++++.++.|+++.+++++ |++|+.||+.....+.. ..++... ++-|++|.+ ..
T Consensus 169 ~tg-neLkYrly~Pkdy~pdkky~PLvlfLHgagq~g~dn~-----~~l~sg~gaiawa~pedqcfVlAPQy------~~ 236 (387)
T COG4099 169 STG-NELKYRLYTPKDYAPDKKYYPLVLFLHGAGQGGSDND-----KVLSSGIGAIAWAGPEDQCFVLAPQY------NP 236 (387)
T ss_pred ccC-ceeeEEEecccccCCCCccccEEEEEecCCCCCchhh-----hhhhcCccceeeecccCceEEEcccc------cc
Confidence 356 7999999999999988888 99999999876543321 1222222 233333331 11
Q ss_pred hHHhcccccCCccHHHHHHHHHH-HHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCcccccccccCCC
Q 004766 528 EWHKGGALAKKQNCFDDFISASE-YLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTI 606 (732)
Q Consensus 528 ~~~~~~~~~~~~~~~~D~~~~~~-~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~ 606 (732)
-+... ..+..+...-.+..++ -|.+.--+|.+||.+.|.|+||+.+.+++.++||.|+|++..+|=-|-
T Consensus 237 if~d~--e~~t~~~l~~~idli~~vlas~ynID~sRIYviGlSrG~~gt~al~~kfPdfFAaa~~iaG~~d~-------- 306 (387)
T COG4099 237 IFADS--EEKTLLYLIEKIDLILEVLASTYNIDRSRIYVIGLSRGGFGTWALAEKFPDFFAAAVPIAGGGDR-------- 306 (387)
T ss_pred ccccc--ccccchhHHHHHHHHHHHHhhccCcccceEEEEeecCcchhhHHHHHhCchhhheeeeecCCCch--------
Confidence 11111 1122233444555555 566777799999999999999999999999999999999977662110
Q ss_pred CCccccccCCCCCHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhcCCCCCC
Q 004766 607 GHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENS 686 (732)
Q Consensus 607 ~~~~~~~~g~p~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~ 686 (732)
+ ..++.+ .+.|+-+.|+.+|..+|...++-.+++|+..
T Consensus 307 ------------------------v-~lv~~l---------k~~piWvfhs~dDkv~Pv~nSrv~y~~lk~~-------- 344 (387)
T COG4099 307 ------------------------V-YLVRTL---------KKAPIWVFHSSDDKVIPVSNSRVLYERLKAL-------- 344 (387)
T ss_pred ------------------------h-hhhhhh---------ccCceEEEEecCCCccccCcceeehHHHHhh--------
Confidence 1 112221 4679999999999999999999999999988
Q ss_pred CCCCCEEEEEeC---CCCCCCCCch-HHHHHHHHHHHHHHHHH
Q 004766 687 PQTNPIIGRIER---KAGHGVGLPT-QKMIDEAADRYGFMAKM 725 (732)
Q Consensus 687 ~~~~~~~~~~~~---~~gH~~~~~~-~~~~~~~~~~~~fl~~~ 725 (732)
++++.+..|. -.-||..... ....-..+..++||.++
T Consensus 345 --~~kv~Ytaf~~g~~~~eG~d~~g~w~atyn~~eaieWLl~Q 385 (387)
T COG4099 345 --DRKVNYTAFLEGTTVLEGVDHSGVWWATYNDAEAIEWLLKQ 385 (387)
T ss_pred --ccccchhhhhhccccccccCCCCcceeecCCHHHHHHHHhc
Confidence 6777776665 2234432111 11112234567787664
|
|
| >TIGR01249 pro_imino_pep_1 proline iminopeptidase, Neisseria-type subfamily | Back alignment and domain information |
|---|
Probab=99.43 E-value=4.7e-12 Score=131.94 Aligned_cols=122 Identities=14% Similarity=0.107 Sum_probs=81.4
Q ss_pred EEEccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhccc
Q 004766 455 FVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGA 534 (732)
Q Consensus 455 ~~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~ 534 (732)
++...|| .+|.+...-+ ...+.||++||+++.... ......+...+|.|+++|.||.|.....
T Consensus 8 ~~~~~~~-~~l~y~~~g~------~~~~~lvllHG~~~~~~~----~~~~~~~~~~~~~vi~~D~~G~G~S~~~------ 70 (306)
T TIGR01249 8 YLNVSDN-HQLYYEQSGN------PDGKPVVFLHGGPGSGTD----PGCRRFFDPETYRIVLFDQRGCGKSTPH------ 70 (306)
T ss_pred eEEcCCC-cEEEEEECcC------CCCCEEEEECCCCCCCCC----HHHHhccCccCCEEEEECCCCCCCCCCC------
Confidence 3445578 7776543211 124568999998776432 1222334347999999999997753211
Q ss_pred ccCCccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCc
Q 004766 535 LAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGV 595 (732)
Q Consensus 535 ~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~ 595 (732)
.......++|+.+.+..+++. ...+++.++|+|+||++++.++.++|++++++|+..++
T Consensus 71 ~~~~~~~~~~~~~dl~~l~~~--l~~~~~~lvG~S~GG~ia~~~a~~~p~~v~~lvl~~~~ 129 (306)
T TIGR01249 71 ACLEENTTWDLVADIEKLREK--LGIKNWLVFGGSWGSTLALAYAQTHPEVVTGLVLRGIF 129 (306)
T ss_pred CCcccCCHHHHHHHHHHHHHH--cCCCCEEEEEECHHHHHHHHHHHHChHhhhhheeeccc
Confidence 111123456777777777655 23458999999999999999999999999888876553
|
This model represents one of two related families of proline iminopeptidase in the alpha/beta fold hydrolase family. The fine specificities of the various members, including both the range of short peptides from which proline can be removed and whether other amino acids such as alanine can be also removed, may vary among members. |
| >PLN02872 triacylglycerol lipase | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.7e-12 Score=137.68 Aligned_cols=146 Identities=19% Similarity=0.225 Sum_probs=97.5
Q ss_pred CCCceEEEEEEEccCCCeeEEEEEEEcCCC-CCCCCccEEEEEcCCCCccCCCCcC---hhHHHHHHhcCcEEEEEcccC
Q 004766 446 RSEFHVHQVFVPSKDGSTKIPMFIVSKKNI-KLDGSHPCLLYGYGGFNISVTPSFS---VSRTILMRHLGAVFCIANIRG 521 (732)
Q Consensus 446 ~~~~~~~~~~~~s~dG~~~i~~~~~~p~~~-~~~~~~P~vv~~hG~~~~~~~~~~~---~~~~~~l~~~G~~v~~~~~rG 521 (732)
...|.+|+..+++.|| ..+.+.-+.+... ....+.|.||+.||...++..+... ......|+++||.|.++|.||
T Consensus 39 ~~gy~~e~h~v~T~DG-y~L~l~ri~~~~~~~~~~~~~~Vll~HGl~~ss~~w~~~~~~~sla~~La~~GydV~l~n~RG 117 (395)
T PLN02872 39 PAGYSCTEHTIQTKDG-YLLALQRVSSRNPRLGSQRGPPVLLQHGLFMAGDAWFLNSPEQSLGFILADHGFDVWVGNVRG 117 (395)
T ss_pred HcCCCceEEEEECCCC-cEEEEEEcCCCCCCCCCCCCCeEEEeCcccccccceeecCcccchHHHHHhCCCCcccccccc
Confidence 4468889999999999 8888876643321 1123468899999987665544322 123445666999999999999
Q ss_pred CCC-CchhHHhccc-----ccCCccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCC---eeeEEEEc
Q 004766 522 GGE-YGEEWHKGGA-----LAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPD---LFGCALAH 592 (732)
Q Consensus 522 ~g~-~g~~~~~~~~-----~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~---~f~a~v~~ 592 (732)
.+. +|........ ..+......|+.++++++.+.. .+++.++|||+||.++..++ .+|+ .++++++.
T Consensus 118 ~~~s~gh~~~~~~~~~fw~~s~~e~a~~Dl~a~id~i~~~~---~~~v~~VGhS~Gg~~~~~~~-~~p~~~~~v~~~~~l 193 (395)
T PLN02872 118 TRWSYGHVTLSEKDKEFWDWSWQELALYDLAEMIHYVYSIT---NSKIFIVGHSQGTIMSLAAL-TQPNVVEMVEAAALL 193 (395)
T ss_pred cccccCCCCCCccchhccCCcHHHHHHHHHHHHHHHHHhcc---CCceEEEEECHHHHHHHHHh-hChHHHHHHHHHHHh
Confidence 763 3322211110 1111233579999999998652 36899999999999998666 4687 46666666
Q ss_pred CCcc
Q 004766 593 VGVM 596 (732)
Q Consensus 593 ~p~~ 596 (732)
+|+.
T Consensus 194 ~P~~ 197 (395)
T PLN02872 194 CPIS 197 (395)
T ss_pred cchh
Confidence 6653
|
|
| >TIGR01250 pro_imino_pep_2 proline-specific peptidases, Bacillus coagulans-type subfamily | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.2e-12 Score=130.88 Aligned_cols=108 Identities=17% Similarity=0.100 Sum_probs=76.7
Q ss_pred CccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCccHHHHHHHHHHHHHHcCCCC
Q 004766 480 SHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQ 559 (732)
Q Consensus 480 ~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d 559 (732)
..|.||++||++++.. .+...+..++.+.||.|+++|.||.|...... ......+++++.+.+..+++. .+
T Consensus 24 ~~~~vl~~hG~~g~~~--~~~~~~~~~l~~~g~~vi~~d~~G~G~s~~~~-----~~~~~~~~~~~~~~~~~~~~~--~~ 94 (288)
T TIGR01250 24 EKIKLLLLHGGPGMSH--EYLENLRELLKEEGREVIMYDQLGCGYSDQPD-----DSDELWTIDYFVDELEEVREK--LG 94 (288)
T ss_pred CCCeEEEEcCCCCccH--HHHHHHHHHHHhcCCEEEEEcCCCCCCCCCCC-----cccccccHHHHHHHHHHHHHH--cC
Confidence 4578999999987642 23333456677459999999999987532100 001123566666666666654 23
Q ss_pred CCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCcc
Q 004766 560 SRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVM 596 (732)
Q Consensus 560 ~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~ 596 (732)
.+++.++|+|+||.++..++.++|++++++|+..++.
T Consensus 95 ~~~~~liG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 131 (288)
T TIGR01250 95 LDKFYLLGHSWGGMLAQEYALKYGQHLKGLIISSMLD 131 (288)
T ss_pred CCcEEEEEeehHHHHHHHHHHhCccccceeeEecccc
Confidence 4579999999999999999999999999999877654
|
This model describes a subfamily of the alpha/beta fold family of hydrolases. Characterized members include prolinases (Pro-Xaa dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC 3.4.11.5), and a leucyl aminopeptidase |
| >PLN02824 hydrolase, alpha/beta fold family protein | Back alignment and domain information |
|---|
Probab=99.42 E-value=5.2e-12 Score=131.01 Aligned_cols=215 Identities=13% Similarity=-0.011 Sum_probs=125.7
Q ss_pred ccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCccHHHHHHHHHHHHHHcCCCCC
Q 004766 481 HPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQS 560 (732)
Q Consensus 481 ~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~ 560 (732)
.|.||++||..+++. .|.... ..|. ..|.|+++|.||.|.....-. .........+++|+...+..+++.-. .
T Consensus 29 ~~~vlllHG~~~~~~--~w~~~~-~~L~-~~~~vi~~DlpG~G~S~~~~~-~~~~~~~~~~~~~~a~~l~~~l~~l~--~ 101 (294)
T PLN02824 29 GPALVLVHGFGGNAD--HWRKNT-PVLA-KSHRVYAIDLLGYGYSDKPNP-RSAPPNSFYTFETWGEQLNDFCSDVV--G 101 (294)
T ss_pred CCeEEEECCCCCChh--HHHHHH-HHHH-hCCeEEEEcCCCCCCCCCCcc-ccccccccCCHHHHHHHHHHHHHHhc--C
Confidence 478999999877653 444433 4456 447999999999886432100 00000123456777766666554422 3
Q ss_pred CcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCcccccccc-----------------cCC-CCCccc-----------
Q 004766 561 RKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYH-----------------KFT-IGHAWV----------- 611 (732)
Q Consensus 561 ~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~-----------------~~~-~~~~~~----------- 611 (732)
+++.++|+|+||+++..++.++|++++++|+..|........ ... .+..+.
T Consensus 102 ~~~~lvGhS~Gg~va~~~a~~~p~~v~~lili~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (294)
T PLN02824 102 DPAFVICNSVGGVVGLQAAVDAPELVRGVMLINISLRGLHIKKQPWLGRPFIKAFQNLLRETAVGKAFFKSVATPETVKN 181 (294)
T ss_pred CCeEEEEeCHHHHHHHHHHHhChhheeEEEEECCCcccccccccchhhhHHHHHHHHHHhchhHHHHHHHhhcCHHHHHH
Confidence 689999999999999999999999999999877643111000 000 000000
Q ss_pred ---cccCCC--CCHHHHHHHHh----------------cCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHH
Q 004766 612 ---SDFGCS--EEEEEFYWLIK----------------YSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLK 670 (732)
Q Consensus 612 ---~~~g~p--~~~~~~~~~~~----------------~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~ 670 (732)
..|+++ .+++..+.+.. ++....... ....+.+|+|+++|.+|..+|...+.+
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~l~~i~~P~lvi~G~~D~~~~~~~~~~ 255 (294)
T PLN02824 182 ILCQCYHDDSAVTDELVEAILRPGLEPGAVDVFLDFISYSGGPLPEE------LLPAVKCPVLIAWGEKDPWEPVELGRA 255 (294)
T ss_pred HHHHhccChhhccHHHHHHHHhccCCchHHHHHHHHhccccccchHH------HHhhcCCCeEEEEecCCCCCChHHHHH
Confidence 012221 11111111111 111000000 011378999999999999999887766
Q ss_pred HHHHHHHhhcCCCCCCCCCCCEEEEEeCCCCCCCCCchHHHHHHHHHHHHHHHH
Q 004766 671 LLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAK 724 (732)
Q Consensus 671 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~ 724 (732)
+.+.+ ...++.+++++||....... ....+.+.+|+.+
T Consensus 256 ~~~~~--------------~~~~~~~i~~~gH~~~~e~p--~~~~~~i~~fl~~ 293 (294)
T PLN02824 256 YANFD--------------AVEDFIVLPGVGHCPQDEAP--ELVNPLIESFVAR 293 (294)
T ss_pred HHhcC--------------CccceEEeCCCCCChhhhCH--HHHHHHHHHHHhc
Confidence 43322 12478888999998765433 3456667888865
|
|
| >PRK10673 acyl-CoA esterase; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.1e-11 Score=125.66 Aligned_cols=206 Identities=15% Similarity=0.043 Sum_probs=118.2
Q ss_pred CCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCccHHHHHHHHHHHHHHcCC
Q 004766 478 DGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGY 557 (732)
Q Consensus 478 ~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~ 557 (732)
.+..|.||++||.++... .|.. ....|. ++|.|+.+|.||.|+.... ...++++..+-+..+++.
T Consensus 13 ~~~~~~iv~lhG~~~~~~--~~~~-~~~~l~-~~~~vi~~D~~G~G~s~~~---------~~~~~~~~~~d~~~~l~~-- 77 (255)
T PRK10673 13 PHNNSPIVLVHGLFGSLD--NLGV-LARDLV-NDHDIIQVDMRNHGLSPRD---------PVMNYPAMAQDLLDTLDA-- 77 (255)
T ss_pred CCCCCCEEEECCCCCchh--HHHH-HHHHHh-hCCeEEEECCCCCCCCCCC---------CCCCHHHHHHHHHHHHHH--
Confidence 356789999999877642 3333 344566 7899999999998865321 112334433333333332
Q ss_pred CCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcC--Ccccccccc-------c-C-CCC-Ccc------ccccCCCC-
Q 004766 558 TQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHV--GVMDMLRYH-------K-F-TIG-HAW------VSDFGCSE- 618 (732)
Q Consensus 558 ~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~--p~~d~~~~~-------~-~-~~~-~~~------~~~~g~p~- 618 (732)
...+++.++|+|+||.++..++.++|++++++|+.. |..-..... . . ..+ ..+ ....-...
T Consensus 78 l~~~~~~lvGhS~Gg~va~~~a~~~~~~v~~lvli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (255)
T PRK10673 78 LQIEKATFIGHSMGGKAVMALTALAPDRIDKLVAIDIAPVDYHVRRHDEIFAAINAVSEAGATTRQQAAAIMRQHLNEEG 157 (255)
T ss_pred cCCCceEEEEECHHHHHHHHHHHhCHhhcceEEEEecCCCCccchhhHHHHHHHHHhhhcccccHHHHHHHHHHhcCCHH
Confidence 234679999999999999999999999999988753 221100000 0 0 000 000 00000000
Q ss_pred -----------------CHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhcC
Q 004766 619 -----------------EEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCT 681 (732)
Q Consensus 619 -----------------~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~ 681 (732)
.+..+..+.....+..+. .+..|+|+++|.+|..|++..+..+.+.+.
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~P~l~i~G~~D~~~~~~~~~~~~~~~~----- 222 (255)
T PRK10673 158 VIQFLLKSFVDGEWRFNVPVLWDQYPHIVGWEKIP----------AWPHPALFIRGGNSPYVTEAYRDDLLAQFP----- 222 (255)
T ss_pred HHHHHHhcCCcceeEeeHHHHHHhHHHHhCCcccC----------CCCCCeEEEECCCCCCCCHHHHHHHHHhCC-----
Confidence 000000111111111111 267899999999999999876666655433
Q ss_pred CCCCCCCCCCEEEEEeCCCCCCCCCchHHHHHHHHHHHHHHHH
Q 004766 682 SLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAK 724 (732)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~ 724 (732)
...+.+++++||....... ......+..||.+
T Consensus 223 ---------~~~~~~~~~~gH~~~~~~p--~~~~~~l~~fl~~ 254 (255)
T PRK10673 223 ---------QARAHVIAGAGHWVHAEKP--DAVLRAIRRYLND 254 (255)
T ss_pred ---------CcEEEEeCCCCCeeeccCH--HHHHHHHHHHHhc
Confidence 2477889999998654332 2455566777754
|
|
| >PLN02965 Probable pheophorbidase | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.4e-11 Score=123.12 Aligned_cols=213 Identities=13% Similarity=0.129 Sum_probs=121.0
Q ss_pred EEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCccHHHHHHHHHHHHHHcCCCCC-C
Q 004766 483 CLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQS-R 561 (732)
Q Consensus 483 ~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~-~ 561 (732)
+||++||..... ..|... ...|.++||.|+++|+||.|..... .....+++++.+.+..+++. .+. +
T Consensus 5 ~vvllHG~~~~~--~~w~~~-~~~L~~~~~~via~Dl~G~G~S~~~-------~~~~~~~~~~a~dl~~~l~~--l~~~~ 72 (255)
T PLN02965 5 HFVFVHGASHGA--WCWYKL-ATLLDAAGFKSTCVDLTGAGISLTD-------SNTVSSSDQYNRPLFALLSD--LPPDH 72 (255)
T ss_pred EEEEECCCCCCc--CcHHHH-HHHHhhCCceEEEecCCcCCCCCCC-------ccccCCHHHHHHHHHHHHHh--cCCCC
Confidence 499999987653 345433 3556448999999999998854211 11123456666655555544 222 5
Q ss_pred cEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCcc---ccc---ccc--cCCCCCccccccC------------------
Q 004766 562 KLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVM---DML---RYH--KFTIGHAWVSDFG------------------ 615 (732)
Q Consensus 562 ~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~---d~~---~~~--~~~~~~~~~~~~g------------------ 615 (732)
++.++|+||||.++..++.++|++++.+|...+.. +.. ... .......|...++
T Consensus 73 ~~~lvGhSmGG~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (255)
T PLN02965 73 KVILVGHSIGGGSVTEALCKFTDKISMAIYVAAAMVKPGSIISPRLKNVMEGTEKIWDYTFGEGPDKPPTGIMMKPEFVR 152 (255)
T ss_pred CEEEEecCcchHHHHHHHHhCchheeEEEEEccccCCCCCCccHHHHhhhhccccceeeeeccCCCCCcchhhcCHHHHH
Confidence 89999999999999999999999999988766541 110 000 0000000100000
Q ss_pred ----CCCCHHHHHHHHhc---CcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhcCCCCCCCC
Q 004766 616 ----CSEEEEEFYWLIKY---SPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQ 688 (732)
Q Consensus 616 ----~p~~~~~~~~~~~~---sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~ 688 (732)
+....+........ .+........+.......++.|+|+++|.+|..||+..+..+++.+..
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vP~lvi~g~~D~~~~~~~~~~~~~~~~~----------- 221 (255)
T PLN02965 153 HYYYNQSPLEDYTLSSKLLRPAPVRAFQDLDKLPPNPEAEKVPRVYIKTAKDNLFDPVRQDVMVENWPP----------- 221 (255)
T ss_pred HHHhcCCCHHHHHHHHHhcCCCCCcchhhhhhccchhhcCCCCEEEEEcCCCCCCCHHHHHHHHHhCCc-----------
Confidence 00000001000000 011000000000000113789999999999999999888777766553
Q ss_pred CCCEEEEEeCCCCCCCCCchHHHHHHHHHHHHHHH
Q 004766 689 TNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMA 723 (732)
Q Consensus 689 ~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~ 723 (732)
.++.+++++||.......+ +....+.+|+.
T Consensus 222 ---a~~~~i~~~GH~~~~e~p~--~v~~~l~~~~~ 251 (255)
T PLN02965 222 ---AQTYVLEDSDHSAFFSVPT--TLFQYLLQAVS 251 (255)
T ss_pred ---ceEEEecCCCCchhhcCHH--HHHHHHHHHHH
Confidence 3678889999997654432 34445555543
|
|
| >PLN03087 BODYGUARD 1 domain containing hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.4e-11 Score=132.99 Aligned_cols=126 Identities=12% Similarity=0.046 Sum_probs=85.1
Q ss_pred EEEccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHH---hcCcEEEEEcccCCCCCchhHHh
Q 004766 455 FVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMR---HLGAVFCIANIRGGGEYGEEWHK 531 (732)
Q Consensus 455 ~~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~---~~G~~v~~~~~rG~g~~g~~~~~ 531 (732)
.|.+..| +++++....|.+. ...|.||++||..+... .|.......+. ++||.|+++|.||.|.....
T Consensus 179 ~~~~~~~-~~l~~~~~gp~~~---~~k~~VVLlHG~~~s~~--~W~~~~~~~L~~~~~~~yrVia~Dl~G~G~S~~p--- 249 (481)
T PLN03087 179 SWLSSSN-ESLFVHVQQPKDN---KAKEDVLFIHGFISSSA--FWTETLFPNFSDAAKSTYRLFAVDLLGFGRSPKP--- 249 (481)
T ss_pred eeEeeCC-eEEEEEEecCCCC---CCCCeEEEECCCCccHH--HHHHHHHHHHHHHhhCCCEEEEECCCCCCCCcCC---
Confidence 3444466 7888777776642 23478999999876542 33322212222 37999999999998764321
Q ss_pred cccccCCccHHHHHHHHHH-HHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCc
Q 004766 532 GGALAKKQNCFDDFISASE-YLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGV 595 (732)
Q Consensus 532 ~~~~~~~~~~~~D~~~~~~-~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~ 595 (732)
.....+++++.+.+. .+++. ...+++.++|+|+||+++..++.++|++++++|+..|.
T Consensus 250 ----~~~~ytl~~~a~~l~~~ll~~--lg~~k~~LVGhSmGG~iAl~~A~~~Pe~V~~LVLi~~~ 308 (481)
T PLN03087 250 ----ADSLYTLREHLEMIERSVLER--YKVKSFHIVAHSLGCILALALAVKHPGAVKSLTLLAPP 308 (481)
T ss_pred ----CCCcCCHHHHHHHHHHHHHHH--cCCCCEEEEEECHHHHHHHHHHHhChHhccEEEEECCC
Confidence 112235666666553 44443 23468999999999999999999999999999987753
|
|
| >TIGR03101 hydr2_PEP hydrolase, ortholog 2, exosortase system type 1 associated | Back alignment and domain information |
|---|
Probab=99.37 E-value=9.8e-11 Score=117.05 Aligned_cols=214 Identities=12% Similarity=-0.001 Sum_probs=135.1
Q ss_pred EEEEccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCC-cChhHHHHHHhcCcEEEEEcccCCCCCchhHHhc
Q 004766 454 VFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPS-FSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKG 532 (732)
Q Consensus 454 ~~~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~-~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~ 532 (732)
+++++..| .+.++++.|.+. ++.|+||++||..+...... ........|+++||.|+.+|+||.|........
T Consensus 3 ~~l~~~~g--~~~~~~~~p~~~---~~~~~VlllHG~g~~~~~~~~~~~~la~~La~~Gy~Vl~~Dl~G~G~S~g~~~~- 76 (266)
T TIGR03101 3 FFLDAPHG--FRFCLYHPPVAV---GPRGVVIYLPPFAEEMNKSRRMVALQARAFAAGGFGVLQIDLYGCGDSAGDFAA- 76 (266)
T ss_pred EEecCCCC--cEEEEEecCCCC---CCceEEEEECCCcccccchhHHHHHHHHHHHHCCCEEEEECCCCCCCCCCcccc-
Confidence 56677777 566777766542 45799999999644321111 111234556669999999999998764322111
Q ss_pred ccccCCccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCccccccccc---------
Q 004766 533 GALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHK--------- 603 (732)
Q Consensus 533 ~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~--------- 603 (732)
..-....+|+.+++++|.+++ ..++.++|+|+||.++..++.++|+.++++|+..|++.-..+..
T Consensus 77 ---~~~~~~~~Dv~~ai~~L~~~~---~~~v~LvG~SmGG~vAl~~A~~~p~~v~~lVL~~P~~~g~~~l~~~lrl~~~~ 150 (266)
T TIGR03101 77 ---ARWDVWKEDVAAAYRWLIEQG---HPPVTLWGLRLGALLALDAANPLAAKCNRLVLWQPVVSGKQQLQQFLRLRLVA 150 (266)
T ss_pred ---CCHHHHHHHHHHHHHHHHhcC---CCCEEEEEECHHHHHHHHHHHhCccccceEEEeccccchHHHHHHHHHHHHHH
Confidence 111123588999999998764 36899999999999999999999999999999999876432211
Q ss_pred -CCCCCc---------------cccccCCCCCHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEeeC-CCCCCCch
Q 004766 604 -FTIGHA---------------WVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTAD-HDDRVVPL 666 (732)
Q Consensus 604 -~~~~~~---------------~~~~~g~p~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~-~D~~v~~~ 666 (732)
...+.. ...-.|-.-.++..+.|.+.....-+. ...++|++... .+..-...
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~l~~~~~-----------~~~~~~~~~~~~~~~~~~~~ 219 (266)
T TIGR03101 151 RRLGGESAEASNSLRERLLAGEDVEIAGYELAPALASDLDQRQLAPAVP-----------KNCPVHWFEVRPEEGATLSP 219 (266)
T ss_pred HhccccccccchhHHhhccCCCeEEEeceecCHHHHHHHHhcccCCCCC-----------CCCceEEEEeccccCCCCCH
Confidence 000000 001112222334444444433211111 23456666553 33444556
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeCCC
Q 004766 667 HSLKLLATMQYVLCTSLENSPQTNPIIGRIERKA 700 (732)
Q Consensus 667 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 700 (732)
...++++++++. |..++...+++.
T Consensus 220 ~~~~l~~~~~~~----------g~~v~~~~~~~~ 243 (266)
T TIGR03101 220 VFSRLGEQWVQS----------GVEVTVDLVPGP 243 (266)
T ss_pred HHHHHHHHHHHc----------CCeEeeeecCCc
Confidence 788999999998 999999999987
|
This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 1, TIGR03100) of the same superfamily. |
| >PRK03204 haloalkane dehalogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.7e-11 Score=126.32 Aligned_cols=103 Identities=14% Similarity=0.026 Sum_probs=75.4
Q ss_pred CccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCccHHHHHHHHHHHHHHcCCCC
Q 004766 480 SHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQ 559 (732)
Q Consensus 480 ~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d 559 (732)
..|.||++||.+... ..|.. ....|. ++|.|+++|.||.|..+.. ......++++.+.+..+++. .+
T Consensus 33 ~~~~iv~lHG~~~~~--~~~~~-~~~~l~-~~~~vi~~D~~G~G~S~~~-------~~~~~~~~~~~~~~~~~~~~--~~ 99 (286)
T PRK03204 33 TGPPILLCHGNPTWS--FLYRD-IIVALR-DRFRCVAPDYLGFGLSERP-------SGFGYQIDEHARVIGEFVDH--LG 99 (286)
T ss_pred CCCEEEEECCCCccH--HHHHH-HHHHHh-CCcEEEEECCCCCCCCCCC-------CccccCHHHHHHHHHHHHHH--hC
Confidence 458899999976432 22332 345566 7899999999998854321 01123567888888877765 24
Q ss_pred CCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCc
Q 004766 560 SRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGV 595 (732)
Q Consensus 560 ~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~ 595 (732)
.+++.++|+|+||.++..++..+|++++++|+..+.
T Consensus 100 ~~~~~lvG~S~Gg~va~~~a~~~p~~v~~lvl~~~~ 135 (286)
T PRK03204 100 LDRYLSMGQDWGGPISMAVAVERADRVRGVVLGNTW 135 (286)
T ss_pred CCCEEEEEECccHHHHHHHHHhChhheeEEEEECcc
Confidence 468999999999999999999999999999876553
|
|
| >TIGR01738 bioH putative pimeloyl-BioC--CoA transferase BioH | Back alignment and domain information |
|---|
Probab=99.37 E-value=6.8e-12 Score=125.81 Aligned_cols=95 Identities=15% Similarity=0.061 Sum_probs=66.8
Q ss_pred cEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCccHHHHHHHHHHHHHHcCCCCCC
Q 004766 482 PCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSR 561 (732)
Q Consensus 482 P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ 561 (732)
|.||++||..+... .|. .....|. .+|.|+++|+||.|.... ....+++++... +.+. . .+
T Consensus 5 ~~iv~~HG~~~~~~--~~~-~~~~~l~-~~~~vi~~d~~G~G~s~~---------~~~~~~~~~~~~---~~~~--~-~~ 65 (245)
T TIGR01738 5 VHLVLIHGWGMNAE--VFR-CLDEELS-AHFTLHLVDLPGHGRSRG---------FGPLSLADAAEA---IAAQ--A-PD 65 (245)
T ss_pred ceEEEEcCCCCchh--hHH-HHHHhhc-cCeEEEEecCCcCccCCC---------CCCcCHHHHHHH---HHHh--C-CC
Confidence 78999999655432 343 2345666 789999999999876321 112234554444 3332 1 26
Q ss_pred cEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCc
Q 004766 562 KLCIEGGSNGGLLVGACINQRPDLFGCALAHVGV 595 (732)
Q Consensus 562 ~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~ 595 (732)
++.++|+|+||++++.++.++|++++++|+..+.
T Consensus 66 ~~~lvG~S~Gg~~a~~~a~~~p~~v~~~il~~~~ 99 (245)
T TIGR01738 66 PAIWLGWSLGGLVALHIAATHPDRVRALVTVASS 99 (245)
T ss_pred CeEEEEEcHHHHHHHHHHHHCHHhhheeeEecCC
Confidence 8999999999999999999999999998876543
|
This CoA-binding enzyme is required for the production of pimeloyl-coenzyme A, the substrate of the BioF protein early in the biosynthesis of biotin. Its exact function is unknown, but is proposed in ref 2. This enzyme belongs to the alpha/beta hydrolase fold family (pfam model pfam00561). Members of this family are restricted to the Proteobacteria. |
| >TIGR02240 PHA_depoly_arom poly(3-hydroxyalkanoate) depolymerase | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.8e-11 Score=124.27 Aligned_cols=219 Identities=14% Similarity=0.041 Sum_probs=130.0
Q ss_pred CCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCc
Q 004766 460 DGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQ 539 (732)
Q Consensus 460 dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~ 539 (732)
+| .++.+.... + +...|.||++||..+... .|.. +...|. .+|.|+++|+||.|..... ...
T Consensus 10 ~~-~~~~~~~~~--~---~~~~~plvllHG~~~~~~--~w~~-~~~~L~-~~~~vi~~Dl~G~G~S~~~--------~~~ 71 (276)
T TIGR02240 10 DG-QSIRTAVRP--G---KEGLTPLLIFNGIGANLE--LVFP-FIEALD-PDLEVIAFDVPGVGGSSTP--------RHP 71 (276)
T ss_pred CC-cEEEEEEec--C---CCCCCcEEEEeCCCcchH--HHHH-HHHHhc-cCceEEEECCCCCCCCCCC--------CCc
Confidence 67 777665431 1 112367999999765543 3433 345566 6899999999998865321 112
Q ss_pred cHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCcccccc------c---ccC---CCC
Q 004766 540 NCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLR------Y---HKF---TIG 607 (732)
Q Consensus 540 ~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~------~---~~~---~~~ 607 (732)
.+++++.+.+..+++. .+.+++.++|+|+||++++.++.++|++.+++|+..+...... . ... ...
T Consensus 72 ~~~~~~~~~~~~~i~~--l~~~~~~LvG~S~GG~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (276)
T TIGR02240 72 YRFPGLAKLAARMLDY--LDYGQVNAIGVSWGGALAQQFAHDYPERCKKLILAATAAGAVMVPGKPKVLMMMASPRRYIQ 149 (276)
T ss_pred CcHHHHHHHHHHHHHH--hCcCceEEEEECHHHHHHHHHHHHCHHHhhheEEeccCCccccCCCchhHHHHhcCchhhhc
Confidence 3455555555555544 2346899999999999999999999999999998876543110 0 000 000
Q ss_pred C-----ccccccCCC--CCHHHHHH-----------------HHhc--CcccCCCCCCCCCCCCCCCCCeEEEEeeCCCC
Q 004766 608 H-----AWVSDFGCS--EEEEEFYW-----------------LIKY--SPLHNVRRPWEQNPDKPFQYPSTLLLTADHDD 661 (732)
Q Consensus 608 ~-----~~~~~~g~p--~~~~~~~~-----------------~~~~--sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~ 661 (732)
. .....++.. .+++.... +... .....+. .+..|+|+++|++|.
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----------~i~~P~lii~G~~D~ 219 (276)
T TIGR02240 150 PSHGIHIAPDIYGGAFRRDPELAMAHASKVRSGGKLGYYWQLFAGLGWTSIHWLH----------KIQQPTLVLAGDDDP 219 (276)
T ss_pred cccccchhhhhccceeeccchhhhhhhhhcccCCCchHHHHHHHHcCCchhhHhh----------cCCCCEEEEEeCCCC
Confidence 0 000001100 01111000 0000 0001112 378899999999999
Q ss_pred CCCchHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeCCCCCCCCCchHHHHHHHHHHHHHHHHH
Q 004766 662 RVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKM 725 (732)
Q Consensus 662 ~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~ 725 (732)
.||+.++.++.+.+.. .++.++++ ||....... .+....+.+|+.+.
T Consensus 220 ~v~~~~~~~l~~~~~~--------------~~~~~i~~-gH~~~~e~p--~~~~~~i~~fl~~~ 266 (276)
T TIGR02240 220 IIPLINMRLLAWRIPN--------------AELHIIDD-GHLFLITRA--EAVAPIIMKFLAEE 266 (276)
T ss_pred cCCHHHHHHHHHhCCC--------------CEEEEEcC-CCchhhccH--HHHHHHHHHHHHHh
Confidence 9999988888766542 25555654 998665433 35566777888764
|
This family consists of the polyhydroxyalkanoic acid (PHA) depolymerase of Pseudomonas oleovorans, Pseudomonas putida BM01, and related species. This enzyme is part of polyester storage and mobilization system as in many bacteria. However, species containing this enzyme are unusual in their capacity to produce aromatic polyesters when grown on carbon sources such as benzoic acid or phenylacetic acid. |
| >PLN02679 hydrolase, alpha/beta fold family protein | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.3e-11 Score=128.27 Aligned_cols=216 Identities=12% Similarity=0.023 Sum_probs=121.5
Q ss_pred ccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCccHHHHHHHHHHHHHHcCCCCC
Q 004766 481 HPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQS 560 (732)
Q Consensus 481 ~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~ 560 (732)
.|.||++||..+... .|... ...|. .+|.|+++|+||.|..... .....+++++.+.+..+++. ...
T Consensus 88 gp~lvllHG~~~~~~--~w~~~-~~~L~-~~~~via~Dl~G~G~S~~~-------~~~~~~~~~~a~~l~~~l~~--l~~ 154 (360)
T PLN02679 88 GPPVLLVHGFGASIP--HWRRN-IGVLA-KNYTVYAIDLLGFGASDKP-------PGFSYTMETWAELILDFLEE--VVQ 154 (360)
T ss_pred CCeEEEECCCCCCHH--HHHHH-HHHHh-cCCEEEEECCCCCCCCCCC-------CCccccHHHHHHHHHHHHHH--hcC
Confidence 478999999876532 34433 34567 6899999999998864221 00123445555544444433 223
Q ss_pred CcEEEEecChhHHHHHHHHh-hCCCeeeEEEEcCCcccccc-----ccc--CCCCCcc----------------------
Q 004766 561 RKLCIEGGSNGGLLVGACIN-QRPDLFGCALAHVGVMDMLR-----YHK--FTIGHAW---------------------- 610 (732)
Q Consensus 561 ~~i~i~G~S~GG~l~~~~~~-~~p~~f~a~v~~~p~~d~~~-----~~~--~~~~~~~---------------------- 610 (732)
+++.++|+|+||+++..++. .+|++++++|+..+...+.. ... ...+..|
T Consensus 155 ~~~~lvGhS~Gg~ia~~~a~~~~P~rV~~LVLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (360)
T PLN02679 155 KPTVLIGNSVGSLACVIAASESTRDLVRGLVLLNCAGGMNNKAVVDDWRIKLLLPLLWLIDFLLKQRGIASALFNRVKQR 234 (360)
T ss_pred CCeEEEEECHHHHHHHHHHHhcChhhcCEEEEECCccccccccccchHHHhhhcchHHHHHHHhhchhhHHHHHHHhcCH
Confidence 68999999999999888776 47999999987765321100 000 0000000
Q ss_pred --c-----cccCCC--CCHHHHHHH-------------HhcCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHH
Q 004766 611 --V-----SDFGCS--EEEEEFYWL-------------IKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHS 668 (732)
Q Consensus 611 --~-----~~~g~p--~~~~~~~~~-------------~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~ 668 (732)
. .-++++ .+++..+.+ ..+.. .... .+..+....+..|+||++|++|..+|+..+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~l~~i~~PtLii~G~~D~~~p~~~~ 311 (360)
T PLN02679 235 DNLKNILLSVYGNKEAVDDELVEIIRGPADDEGALDAFVSIVT--GPPG-PNPIKLIPRISLPILVLWGDQDPFTPLDGP 311 (360)
T ss_pred HHHHHHHHHhccCcccCCHHHHHHHHhhccCCChHHHHHHHHh--cCCC-CCHHHHhhhcCCCEEEEEeCCCCCcCchhh
Confidence 0 001111 111111111 10000 0000 000000113788999999999999998753
Q ss_pred -HHHHHHHHHhhcCCCCCCCCCCCEEEEEeCCCCCCCCCchHHHHHHHHHHHHHHHH
Q 004766 669 -LKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAK 724 (732)
Q Consensus 669 -~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~ 724 (732)
.++.+.|.+. -...++++++++||....... .+..+.+.+||.+
T Consensus 312 ~~~~~~~l~~~----------ip~~~l~~i~~aGH~~~~E~P--e~~~~~I~~FL~~ 356 (360)
T PLN02679 312 VGKYFSSLPSQ----------LPNVTLYVLEGVGHCPHDDRP--DLVHEKLLPWLAQ 356 (360)
T ss_pred HHHHHHhhhcc----------CCceEEEEcCCCCCCccccCH--HHHHHHHHHHHHh
Confidence 3455555543 234688999999998765443 3555678888865
|
|
| >PF08840 BAAT_C: BAAT / Acyl-CoA thioester hydrolase C terminal; InterPro: IPR014940 Acyl-CoA thioesterases are a group of enzymes that catalyse the hydrolysis of acyl-CoAs to the free fatty acid and coenzyme A (CoASH), providing the potential to regulate intracellular levels of acyl-CoAs, free fatty acids and CoASH | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.1e-11 Score=120.78 Aligned_cols=166 Identities=16% Similarity=0.094 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCcccccccc---cCC---CCCccc--cc
Q 004766 542 FDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYH---KFT---IGHAWV--SD 613 (732)
Q Consensus 542 ~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~---~~~---~~~~~~--~~ 613 (732)
++=|..|++||.++..+++++|+|+|.|.||-+++.+++.+| .++|+|+.+|..-+.... ... ....+. ..
T Consensus 3 LEyfe~Ai~~L~~~p~v~~~~Igi~G~SkGaelALllAs~~~-~i~avVa~~ps~~~~~~~~~~~~~~~~lp~~~~~~~~ 81 (213)
T PF08840_consen 3 LEYFEEAIDWLKSHPEVDPDKIGIIGISKGAELALLLASRFP-QISAVVAISPSSVVFQGIGFYRDSSKPLPYLPFDISK 81 (213)
T ss_dssp CHHHHHHHHHHHCSTTB--SSEEEEEETHHHHHHHHHHHHSS-SEEEEEEES--SB--SSEEEETTE--EE----B-GGG
T ss_pred hHHHHHHHHHHHhCCCCCCCCEEEEEECHHHHHHHHHHhcCC-CccEEEEeCCceeEecchhcccCCCccCCcCCcChhh
Confidence 356889999999999999999999999999999999999988 789999988854332111 000 000000 00
Q ss_pred --cCCCCCHHHHHHH-HhcCc-c----cCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchH-HHHHHHHHHHhhcCCCC
Q 004766 614 --FGCSEEEEEFYWL-IKYSP-L----HNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLH-SLKLLATMQYVLCTSLE 684 (732)
Q Consensus 614 --~g~p~~~~~~~~~-~~~sp-~----~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~-~~~~~~~l~~~~~~~~~ 684 (732)
+-.+........+ ..... . -.++ +++.|+|+++|.+|...|-.. +..+.++|+++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~a~IpvE----------~i~~piLli~g~dD~~WpS~~~a~~i~~rL~~~------ 145 (213)
T PF08840_consen 82 FSWNEPGLLRSRYAFELADDKAVEEARIPVE----------KIKGPILLISGEDDQIWPSSEMAEQIEERLKAA------ 145 (213)
T ss_dssp -EE-TTS-EE-TT-B--TTTGGGCCCB--GG----------G--SEEEEEEETT-SSS-HHHHHHHHHHHHHCT------
T ss_pred ceecCCcceehhhhhhcccccccccccccHH----------HcCCCEEEEEeCCCCccchHHHHHHHHHHHHHh------
Confidence 0000000000000 00000 0 1122 378899999999999988666 55666778876
Q ss_pred CCCCCC--CEEEEEeCCCCCCCCCch--------------------------HHHHHHHHHHHHHHHHHhCC
Q 004766 685 NSPQTN--PIIGRIERKAGHGVGLPT--------------------------QKMIDEAADRYGFMAKMLGA 728 (732)
Q Consensus 685 ~~~~~~--~~~~~~~~~~gH~~~~~~--------------------------~~~~~~~~~~~~fl~~~l~~ 728 (732)
+. +++++.|+++||.+..+- ....+.+..+++||.++|+.
T Consensus 146 ----~~~~~~~~l~Y~~aGH~i~~Py~P~~~~~~~~~~~~~~~~GG~~~~~a~A~~dsW~~~l~Fl~~~L~~ 213 (213)
T PF08840_consen 146 ----GFPHNVEHLSYPGAGHLIEPPYFPHCRASYHKFIGTPLAWGGEPEAHAKAQEDSWKKILEFLRKHLGQ 213 (213)
T ss_dssp ----T-----EEEEETTB-S---STT-----EEEETTTTEEEE--B-HHHHHHHHHHHHHHHHHHHHHH---
T ss_pred ----CCCCcceEEEcCCCCceecCCCCCCcccccccccCCcccCCCChHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 54 488999999999864210 02356788899999999973
|
Bile acid-CoA:amino acid N-acetyltransferase (BAAT) is involved in bile acid metabolism and may also act as an acyl-CoA thioesterase that regulates intracellular levels of free fatty acids []. This entry represents a catalytic domain is found at the C terminus of acyl-CoA thioester hydrolases and bile acid-CoA:amino acid N-acetyltransferases. ; PDB: 3K2I_B 3HLK_B. |
| >KOG1838 consensus Alpha/beta hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.34 E-value=8.3e-11 Score=120.54 Aligned_cols=221 Identities=16% Similarity=0.087 Sum_probs=145.6
Q ss_pred eEEEEEEEccCCCeeEEEEEEEcCCCC---CCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCc
Q 004766 450 HVHQVFVPSKDGSTKIPMFIVSKKNIK---LDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYG 526 (732)
Q Consensus 450 ~~~~~~~~s~dG~~~i~~~~~~p~~~~---~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g 526 (732)
.-++..++.+|| -.+-.-++.+.+.. .++..|+||++||-.|.+.+ .|-..+...+.++||.+++.|.||-++.-
T Consensus 92 ~y~Reii~~~DG-G~~~lDW~~~~~~~~~~~~~~~P~vvilpGltg~S~~-~YVr~lv~~a~~~G~r~VVfN~RG~~g~~ 169 (409)
T KOG1838|consen 92 EYTREIIKTSDG-GTVTLDWVENPDSRCRTDDGTDPIVVILPGLTGGSHE-SYVRHLVHEAQRKGYRVVVFNHRGLGGSK 169 (409)
T ss_pred cceeEEEEeCCC-CEEEEeeccCcccccCCCCCCCcEEEEecCCCCCChh-HHHHHHHHHHHhCCcEEEEECCCCCCCCc
Confidence 345556677788 89988888666532 24678999999999888766 44444445556699999999999955421
Q ss_pred hhHHhcccccCCccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhC---CCeeeEEEEcCCcccc--ccc
Q 004766 527 EEWHKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQR---PDLFGCALAHVGVMDM--LRY 601 (732)
Q Consensus 527 ~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~---p~~f~a~v~~~p~~d~--~~~ 601 (732)
-. ..+..-...-+|+.++++++.++-- ..++.++|+|+||.|....+.+. ..+.+|+++..|+--. .+.
T Consensus 170 Lt----Tpr~f~ag~t~Dl~~~v~~i~~~~P--~a~l~avG~S~Gg~iL~nYLGE~g~~~~l~~a~~v~~Pwd~~~~~~~ 243 (409)
T KOG1838|consen 170 LT----TPRLFTAGWTEDLREVVNHIKKRYP--QAPLFAVGFSMGGNILTNYLGEEGDNTPLIAAVAVCNPWDLLAASRS 243 (409)
T ss_pred cC----CCceeecCCHHHHHHHHHHHHHhCC--CCceEEEEecchHHHHHHHhhhccCCCCceeEEEEeccchhhhhhhH
Confidence 10 0111122335899999999988732 24799999999999999999863 4467777777775421 000
Q ss_pred c------------------------c---CCCCCccc-----------------cccCCCCCHHHHHHHHhcCcccCCCC
Q 004766 602 H------------------------K---FTIGHAWV-----------------SDFGCSEEEEEFYWLIKYSPLHNVRR 637 (732)
Q Consensus 602 ~------------------------~---~~~~~~~~-----------------~~~g~p~~~~~~~~~~~~sp~~~~~~ 637 (732)
. . +.....|. ..||-+. .-+++++-|+...+++
T Consensus 244 ~~~~~~~~~y~~~l~~~l~~~~~~~r~~~~~~~vd~d~~~~~~SvreFD~~~t~~~~gf~~---~deYY~~aSs~~~v~~ 320 (409)
T KOG1838|consen 244 IETPLYRRFYNRALTLNLKRIVLRHRHTLFEDPVDFDVILKSRSVREFDEALTRPMFGFKS---VDEYYKKASSSNYVDK 320 (409)
T ss_pred HhcccchHHHHHHHHHhHHHHHhhhhhhhhhccchhhhhhhcCcHHHHHhhhhhhhcCCCc---HHHHHhhcchhhhccc
Confidence 0 0 00000000 0122222 2345788899999988
Q ss_pred CCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeCCCCCCC
Q 004766 638 PWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGV 704 (732)
Q Consensus 638 ~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~ 704 (732)
++.|+|++++.+|+.||.. +.-.-+..+ +.-+.+.+...+||-.
T Consensus 321 ----------I~VP~L~ina~DDPv~p~~-~ip~~~~~~------------np~v~l~~T~~GGHlg 364 (409)
T KOG1838|consen 321 ----------IKVPLLCINAADDPVVPEE-AIPIDDIKS------------NPNVLLVITSHGGHLG 364 (409)
T ss_pred ----------ccccEEEEecCCCCCCCcc-cCCHHHHhc------------CCcEEEEEeCCCceee
Confidence 8999999999999999974 222222221 4568888888899964
|
|
| >TIGR03695 menH_SHCHC 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.4e-11 Score=120.13 Aligned_cols=103 Identities=15% Similarity=0.121 Sum_probs=74.4
Q ss_pred cEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCccHHHHHHHH-HHHHHHcCCCCC
Q 004766 482 PCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISA-SEYLISAGYTQS 560 (732)
Q Consensus 482 P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~-~~~l~~~~~~d~ 560 (732)
|+||++||..+... .|.. ....|+ +||.|+.+|.||.|+.... .......++++... +..+.+. .+.
T Consensus 2 ~~vv~~hG~~~~~~--~~~~-~~~~L~-~~~~v~~~d~~g~G~s~~~------~~~~~~~~~~~~~~~~~~~~~~--~~~ 69 (251)
T TIGR03695 2 PVLVFLHGFLGSGA--DWQA-LIELLG-PHFRCLAIDLPGHGSSQSP------DEIERYDFEEAAQDILATLLDQ--LGI 69 (251)
T ss_pred CEEEEEcCCCCchh--hHHH-HHHHhc-ccCeEEEEcCCCCCCCCCC------CccChhhHHHHHHHHHHHHHHH--cCC
Confidence 78999999876543 3433 345566 8999999999998764221 11123455666655 5555544 245
Q ss_pred CcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCcc
Q 004766 561 RKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVM 596 (732)
Q Consensus 561 ~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~ 596 (732)
+++.++|+|+||.++..++.++|+.++++|+..|..
T Consensus 70 ~~~~l~G~S~Gg~ia~~~a~~~~~~v~~lil~~~~~ 105 (251)
T TIGR03695 70 EPFFLVGYSMGGRIALYYALQYPERVQGLILESGSP 105 (251)
T ss_pred CeEEEEEeccHHHHHHHHHHhCchheeeeEEecCCC
Confidence 789999999999999999999999999998877654
|
This protein catalyzes the formation of SHCHC, or (1 R,6 R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate, by elmination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Note that SHCHC synthase activity previously was attributed to MenD, which in fact is SEPHCHC synthase. |
| >PRK06489 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=4e-11 Score=127.82 Aligned_cols=109 Identities=17% Similarity=0.103 Sum_probs=70.1
Q ss_pred ccEEEEEcCCCCccCCCCcChhHHHH--------HHhcCcEEEEEcccCCCCCchhHHhcccccCCccHHHHHHHHHH-H
Q 004766 481 HPCLLYGYGGFNISVTPSFSVSRTIL--------MRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASE-Y 551 (732)
Q Consensus 481 ~P~vv~~hG~~~~~~~~~~~~~~~~~--------l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~-~ 551 (732)
.|.||++||+.++...+. .+.+... +. ++|.|+++|+||.|..... ...........+++|+.+.+. .
T Consensus 69 gpplvllHG~~~~~~~~~-~~~~~~~l~~~~~~l~~-~~~~Via~Dl~GhG~S~~p-~~~~~~~~~~~~~~~~a~~~~~~ 145 (360)
T PRK06489 69 DNAVLVLHGTGGSGKSFL-SPTFAGELFGPGQPLDA-SKYFIILPDGIGHGKSSKP-SDGLRAAFPRYDYDDMVEAQYRL 145 (360)
T ss_pred CCeEEEeCCCCCchhhhc-cchhHHHhcCCCCcccc-cCCEEEEeCCCCCCCCCCC-CcCCCCCCCcccHHHHHHHHHHH
Confidence 688999999877643321 1222222 24 7899999999998854210 000000011245677775443 3
Q ss_pred HHHcCCCCCCcEE-EEecChhHHHHHHHHhhCCCeeeEEEEcCC
Q 004766 552 LISAGYTQSRKLC-IEGGSNGGLLVGACINQRPDLFGCALAHVG 594 (732)
Q Consensus 552 l~~~~~~d~~~i~-i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p 594 (732)
+.+. ..-+++. ++|+|+||++++.++.++|++++++|+..+
T Consensus 146 l~~~--lgi~~~~~lvG~SmGG~vAl~~A~~~P~~V~~LVLi~s 187 (360)
T PRK06489 146 VTEG--LGVKHLRLILGTSMGGMHAWMWGEKYPDFMDALMPMAS 187 (360)
T ss_pred HHHh--cCCCceeEEEEECHHHHHHHHHHHhCchhhheeeeecc
Confidence 4343 1224664 899999999999999999999999987655
|
|
| >KOG4178 consensus Soluble epoxide hydrolase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.8e-10 Score=114.05 Aligned_cols=119 Identities=14% Similarity=0.086 Sum_probs=82.8
Q ss_pred EEccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccc
Q 004766 456 VPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGAL 535 (732)
Q Consensus 456 ~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~ 535 (732)
+.+-+| ++++...-. .+..|+|+++||.+....++.+. ...|+.+||.|+++|.||.|.... ..
T Consensus 26 ~~~~~g-I~~h~~e~g------~~~gP~illlHGfPe~wyswr~q---~~~la~~~~rviA~DlrGyG~Sd~------P~ 89 (322)
T KOG4178|consen 26 FVTYKG-IRLHYVEGG------PGDGPIVLLLHGFPESWYSWRHQ---IPGLASRGYRVIAPDLRGYGFSDA------PP 89 (322)
T ss_pred eEEEcc-EEEEEEeec------CCCCCEEEEEccCCccchhhhhh---hhhhhhcceEEEecCCCCCCCCCC------CC
Confidence 334467 666655442 25689999999999887665554 244666999999999999775311 11
Q ss_pred cCCccHH----HHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEc-CCcc
Q 004766 536 AKKQNCF----DDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAH-VGVM 596 (732)
Q Consensus 536 ~~~~~~~----~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~-~p~~ 596 (732)
.....++ .|+++.++.| | -+|+.+.||++|++++..++.++|++..+.|+. +|..
T Consensus 90 ~~~~Yt~~~l~~di~~lld~L---g---~~k~~lvgHDwGaivaw~la~~~Perv~~lv~~nv~~~ 149 (322)
T KOG4178|consen 90 HISEYTIDELVGDIVALLDHL---G---LKKAFLVGHDWGAIVAWRLALFYPERVDGLVTLNVPFP 149 (322)
T ss_pred CcceeeHHHHHHHHHHHHHHh---c---cceeEEEeccchhHHHHHHHHhChhhcceEEEecCCCC
Confidence 1122233 4555555444 3 369999999999999999999999999998764 4444
|
|
| >PLN02894 hydrolase, alpha/beta fold family protein | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.1e-10 Score=125.72 Aligned_cols=108 Identities=14% Similarity=0.010 Sum_probs=69.8
Q ss_pred CCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCccHHHHHHHHHHHHHHcCCC
Q 004766 479 GSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYT 558 (732)
Q Consensus 479 ~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~ 558 (732)
+..|+||++||..+.. ..|...+ ..|. ++|.|+++|+||.|...+.-.. ........+.+++.+..+++. .
T Consensus 103 ~~~p~vvllHG~~~~~--~~~~~~~-~~L~-~~~~vi~~D~rG~G~S~~~~~~---~~~~~~~~~~~~~~i~~~~~~--l 173 (402)
T PLN02894 103 EDAPTLVMVHGYGASQ--GFFFRNF-DALA-SRFRVIAIDQLGWGGSSRPDFT---CKSTEETEAWFIDSFEEWRKA--K 173 (402)
T ss_pred CCCCEEEEECCCCcch--hHHHHHH-HHHH-hCCEEEEECCCCCCCCCCCCcc---cccHHHHHHHHHHHHHHHHHH--c
Confidence 4568999999976543 2333333 4466 5799999999998865331100 000011112233333333322 2
Q ss_pred CCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCc
Q 004766 559 QSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGV 595 (732)
Q Consensus 559 d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~ 595 (732)
+.+++.++|||+||++++.++.++|+.++++|+..|.
T Consensus 174 ~~~~~~lvGhS~GG~la~~~a~~~p~~v~~lvl~~p~ 210 (402)
T PLN02894 174 NLSNFILLGHSFGGYVAAKYALKHPEHVQHLILVGPA 210 (402)
T ss_pred CCCCeEEEEECHHHHHHHHHHHhCchhhcEEEEECCc
Confidence 3468999999999999999999999999998877653
|
|
| >TIGR01836 PHA_synth_III_C poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.7e-11 Score=127.60 Aligned_cols=110 Identities=15% Similarity=0.104 Sum_probs=74.4
Q ss_pred CccEEEEEcCCCCccCCCCc--ChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCccHHHHHHHHHHHHHHcCC
Q 004766 480 SHPCLLYGYGGFNISVTPSF--SVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGY 557 (732)
Q Consensus 480 ~~P~vv~~hG~~~~~~~~~~--~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~ 557 (732)
+.| ||++||-......... ...+...|.++||.|+++|+||.|..... ........+|+.++++++.++.
T Consensus 62 ~~p-vl~v~~~~~~~~~~d~~~~~~~~~~L~~~G~~V~~~D~~g~g~s~~~------~~~~d~~~~~~~~~v~~l~~~~- 133 (350)
T TIGR01836 62 KTP-LLIVYALVNRPYMLDLQEDRSLVRGLLERGQDVYLIDWGYPDRADRY------LTLDDYINGYIDKCVDYICRTS- 133 (350)
T ss_pred CCc-EEEeccccccceeccCCCCchHHHHHHHCCCeEEEEeCCCCCHHHhc------CCHHHHHHHHHHHHHHHHHHHh-
Confidence 345 7888875322111111 12345556669999999999986632110 0111111245778899988763
Q ss_pred CCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCcccc
Q 004766 558 TQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDM 598 (732)
Q Consensus 558 ~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~ 598 (732)
..+++.++|+|+||.+++.++..+|+.++++|+.+|.+|+
T Consensus 134 -~~~~i~lvGhS~GG~i~~~~~~~~~~~v~~lv~~~~p~~~ 173 (350)
T TIGR01836 134 -KLDQISLLGICQGGTFSLCYAALYPDKIKNLVTMVTPVDF 173 (350)
T ss_pred -CCCcccEEEECHHHHHHHHHHHhCchheeeEEEecccccc
Confidence 3468999999999999999999999999999998887775
|
This model represents the PhaC subunit of a heterodimeric form of polyhydroxyalkanoic acid (PHA) synthase. Excepting the PhaC of Bacillus megaterium (which needs PhaR), all members require PhaE (TIGR01834) for activity and are designated class III. This enzyme builds ester polymers for carbon and energy storage that accumulate in inclusions, and both this enzyme and the depolymerase associate with the inclusions. Class III enzymes polymerize short-chain-length hydroxyalkanoates. |
| >PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.1e-11 Score=129.79 Aligned_cols=103 Identities=13% Similarity=0.097 Sum_probs=77.2
Q ss_pred CCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCccHHHHHHHHHHHHHHcCCC
Q 004766 479 GSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYT 558 (732)
Q Consensus 479 ~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~ 558 (732)
+..|.||++||..+... .|.. ....|. ++|.|+++|+||.|..... .....++++.+.+..+++. .
T Consensus 129 ~~~~~vl~~HG~~~~~~--~~~~-~~~~l~-~~~~v~~~d~~g~G~s~~~--------~~~~~~~~~~~~~~~~~~~--~ 194 (371)
T PRK14875 129 GDGTPVVLIHGFGGDLN--NWLF-NHAALA-AGRPVIALDLPGHGASSKA--------VGAGSLDELAAAVLAFLDA--L 194 (371)
T ss_pred CCCCeEEEECCCCCccc--hHHH-HHHHHh-cCCEEEEEcCCCCCCCCCC--------CCCCCHHHHHHHHHHHHHh--c
Confidence 34688999998766533 2332 234566 6799999999998865321 1234577777777776655 4
Q ss_pred CCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCc
Q 004766 559 QSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGV 595 (732)
Q Consensus 559 d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~ 595 (732)
++.++.++|+|+||+++..++.++|++++++|+..|.
T Consensus 195 ~~~~~~lvG~S~Gg~~a~~~a~~~~~~v~~lv~~~~~ 231 (371)
T PRK14875 195 GIERAHLVGHSMGGAVALRLAARAPQRVASLTLIAPA 231 (371)
T ss_pred CCccEEEEeechHHHHHHHHHHhCchheeEEEEECcC
Confidence 5678999999999999999999999999999988765
|
|
| >PF12697 Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3LLC_A 3A2N_E 3A2M_A 3A2L_A 3AFI_F 3C5V_A 3C5W_P 3E0X_A 2ZJF_A 3QYJ_A | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.9e-12 Score=127.99 Aligned_cols=186 Identities=16% Similarity=0.096 Sum_probs=114.2
Q ss_pred EEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCccHHHHHHHHHHHHHHcCCCCCCcE
Q 004766 484 LLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSRKL 563 (732)
Q Consensus 484 vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i 563 (732)
||++||..+.. ..|.. +...|+ +||.|+++|.||.|.....- .....++++..+.+..+++. ...+++
T Consensus 1 vv~~hG~~~~~--~~~~~-~~~~l~-~~~~v~~~d~~G~G~s~~~~------~~~~~~~~~~~~~l~~~l~~--~~~~~~ 68 (228)
T PF12697_consen 1 VVFLHGFGGSS--ESWDP-LAEALA-RGYRVIAFDLPGHGRSDPPP------DYSPYSIEDYAEDLAELLDA--LGIKKV 68 (228)
T ss_dssp EEEE-STTTTG--GGGHH-HHHHHH-TTSEEEEEECTTSTTSSSHS------SGSGGSHHHHHHHHHHHHHH--TTTSSE
T ss_pred eEEECCCCCCH--HHHHH-HHHHHh-CCCEEEEEecCCcccccccc------ccCCcchhhhhhhhhhcccc--cccccc
Confidence 78999987765 34444 445666 89999999999987643211 11234556666665555554 223689
Q ss_pred EEEecChhHHHHHHHHhhCCCeeeEEEEcCCcccccccc---------cCCCC------Cccc-cccC---CCCC-HHH-
Q 004766 564 CIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYH---------KFTIG------HAWV-SDFG---CSEE-EEE- 622 (732)
Q Consensus 564 ~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~---------~~~~~------~~~~-~~~g---~p~~-~~~- 622 (732)
.++|+|+||.+++.++.++|++++++|+..|........ ..... ..+. ..+. .... .+.
T Consensus 69 ~lvG~S~Gg~~a~~~a~~~p~~v~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (228)
T PF12697_consen 69 ILVGHSMGGMIALRLAARYPDRVKGLVLLSPPPPLPDSPSRSFGPSFIRRLLAWRSRSLRRLASRFFYRWFDGDEPEDLI 148 (228)
T ss_dssp EEEEETHHHHHHHHHHHHSGGGEEEEEEESESSSHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred cccccccccccccccccccccccccceeecccccccccccccccchhhhhhhhccccccccccccccccccccccccccc
Confidence 999999999999999999999999999988877432110 00000 0000 0000 0000 000
Q ss_pred -------HHHHH----hcCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhcCCCCCCCCCCC
Q 004766 623 -------FYWLI----KYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNP 691 (732)
Q Consensus 623 -------~~~~~----~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 691 (732)
.+.+. ..++...... +..|+|+++|.+|..++.....++.+.+ ..
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~pvl~i~g~~D~~~~~~~~~~~~~~~--------------~~ 204 (228)
T PF12697_consen 149 RSSRRALAEYLRSNLWQADLSEALPR----------IKVPVLVIHGEDDPIVPPESAEELADKL--------------PN 204 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHG----------SSSEEEEEEETTSSSSHHHHHHHHHHHS--------------TT
T ss_pred cccccccccccccccccccccccccc----------cCCCeEEeecCCCCCCCHHHHHHHHHHC--------------CC
Confidence 01111 1112223333 6789999999999999865555554443 24
Q ss_pred EEEEEeCCCCCCCC
Q 004766 692 IIGRIERKAGHGVG 705 (732)
Q Consensus 692 ~~~~~~~~~gH~~~ 705 (732)
+++.+++++||...
T Consensus 205 ~~~~~~~~~gH~~~ 218 (228)
T PF12697_consen 205 AELVVIPGAGHFLF 218 (228)
T ss_dssp EEEEEETTSSSTHH
T ss_pred CEEEEECCCCCccH
Confidence 68999999999854
|
... |
| >TIGR01392 homoserO_Ac_trn homoserine O-acetyltransferase | Back alignment and domain information |
|---|
Probab=99.30 E-value=5.6e-11 Score=126.29 Aligned_cols=129 Identities=13% Similarity=0.072 Sum_probs=82.0
Q ss_pred CCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCC---------CcChhH---HHHHHhcCcEEEEEcccC--CCCC
Q 004766 460 DGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTP---------SFSVSR---TILMRHLGAVFCIANIRG--GGEY 525 (732)
Q Consensus 460 dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~---------~~~~~~---~~~l~~~G~~v~~~~~rG--~g~~ 525 (732)
+| ++|.+...-+.+. +..|.||++||-.++.... .|...+ ..++. .+|.|+++|+|| +|..
T Consensus 14 ~~-~~~~y~~~g~~~~---~~~~~vll~Hg~~~~~~~~~~~~~~~~~~w~~~~~~~~~l~~-~~~~vi~~D~~G~~~g~s 88 (351)
T TIGR01392 14 SD-VRVAYETYGTLNA---ERSNAVLVCHALTGDAHVAGYHDDGDPGWWDDLIGPGRAIDT-DRYFVVCSNVLGGCYGST 88 (351)
T ss_pred CC-ceEEEEeccccCC---CCCCEEEEcCCcCcchhhcccCCCCCCCchhhccCCCCCcCC-CceEEEEecCCCCCCCCC
Confidence 45 5665555533221 2357999999977754221 122211 13334 899999999999 4443
Q ss_pred ch-hHHhcccc---cCCccHHHHHHHHHHHHHHcCCCCCCc-EEEEecChhHHHHHHHHhhCCCeeeEEEEcCCc
Q 004766 526 GE-EWHKGGAL---AKKQNCFDDFISASEYLISAGYTQSRK-LCIEGGSNGGLLVGACINQRPDLFGCALAHVGV 595 (732)
Q Consensus 526 g~-~~~~~~~~---~~~~~~~~D~~~~~~~l~~~~~~d~~~-i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~ 595 (732)
+. .+...+.. .....+++|+.+.+..+++.- ..++ +.++|+|+||+++..++.++|++++++|+..+.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~l~G~S~Gg~ia~~~a~~~p~~v~~lvl~~~~ 161 (351)
T TIGR01392 89 GPSSINPGGRPYGSDFPLITIRDDVKAQKLLLDHL--GIEQIAAVVGGSMGGMQALEWAIDYPERVRAIVVLATS 161 (351)
T ss_pred CCCCCCCCCCcCCCCCCCCcHHHHHHHHHHHHHHc--CCCCceEEEEECHHHHHHHHHHHHChHhhheEEEEccC
Confidence 32 22111110 112356788887776666542 3357 999999999999999999999999988877654
|
This family describes homoserine-O-acetyltransferase, an enzyme of methionine biosynthesis. This model has been rebuilt to identify sequences more broadly, including a number of sequences suggested to be homoserine O-acetyltransferase based on proximity to other Met biosynthesis genes. |
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.29 E-value=9e-10 Score=108.47 Aligned_cols=285 Identities=16% Similarity=0.116 Sum_probs=153.6
Q ss_pred EEEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecccccc-eeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCC
Q 004766 132 AALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSW-FKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGT 210 (732)
Q Consensus 132 ~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~~~-~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~ 210 (732)
-.+-..+|||||++|| .|+...++++||+.|..++-.-... --...++|||||+.|+-.+.++
T Consensus 116 e~Vl~~~fsp~g~~l~-----tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg----------- 179 (480)
T KOG0271|consen 116 EAVLSVQFSPTGSRLV-----TGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDG----------- 179 (480)
T ss_pred CcEEEEEecCCCceEE-----ecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCC-----------
Confidence 4455789999999998 4455589999999987754322111 1247899999999999776443
Q ss_pred cccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEE-----ecCCcEEEEEEecCCcceEEEEEEeCCCCCCCccc
Q 004766 211 ETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHV-----TEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEG 285 (732)
Q Consensus 211 ~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~-----SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~ 285 (732)
.|.+|+-.+++.....+ +.+..++..++| .|..++++-.+.+ +.+.++|+..+.
T Consensus 180 --------~I~lwdpktg~~~g~~l---~gH~K~It~Lawep~hl~p~~r~las~skD-----g~vrIWd~~~~~----- 238 (480)
T KOG0271|consen 180 --------SIRLWDPKTGQQIGRAL---RGHKKWITALAWEPLHLVPPCRRLASSSKD-----GSVRIWDTKLGT----- 238 (480)
T ss_pred --------eEEEecCCCCCcccccc---cCcccceeEEeecccccCCCccceecccCC-----CCEEEEEccCce-----
Confidence 58888876654322212 234456777776 4577876654433 336777876532
Q ss_pred ccccCCCCCcEEeeecccceEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEe-------
Q 004766 286 FKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAV------- 358 (732)
Q Consensus 286 ~~~~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~------- 358 (732)
....+. +.-..+.++..-|+-+++....+. ..++|+ ...+...++|-.|. ..+..++++
T Consensus 239 --------~~~~ls-gHT~~VTCvrwGG~gliySgS~Dr-tIkvw~--a~dG~~~r~lkGHa--hwvN~lalsTdy~LRt 304 (480)
T KOG0271|consen 239 --------CVRTLS-GHTASVTCVRWGGEGLIYSGSQDR-TIKVWR--ALDGKLCRELKGHA--HWVNHLALSTDYVLRT 304 (480)
T ss_pred --------EEEEec-cCccceEEEEEcCCceEEecCCCc-eEEEEE--ccchhHHHhhcccc--hheeeeeccchhhhhc
Confidence 122332 222233333334555555554432 334443 33333223332222 222222222
Q ss_pred ------c-----------------------CCEEEEEEecCCeeEEEEEeCCC-CceeeecccccceeeEeecccCCcEE
Q 004766 359 ------N-----------------------LNQMIVSYLSDVKYVLQIRDLKN-GSLLHQLPIEIGSVNAISARREDSVV 408 (732)
Q Consensus 359 ------~-----------------------~~~l~~~~~~~g~~~l~~~d~~~-g~~~~~l~~~~g~v~~~~~s~d~~~l 408 (732)
+ ....+++..++ ..+++|+... .+.+.+.+.+...|..+.+|||+..
T Consensus 305 gaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd--~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~- 381 (480)
T KOG0271|consen 305 GAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDD--FTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRY- 381 (480)
T ss_pred cccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCC--ceEEEecccccccchhhhhchhhheeeEEECCCccE-
Confidence 1 01235666666 4788998642 2334455555666778899999874
Q ss_pred EEEEecCCCCceEEEEECCCCCCceEEEEeecCCCCCCCCceEEEEEEEccCCCeeEEEEEEEcCCC
Q 004766 409 FISFTSFLIPGIVYQCNLKTETPEMKIFRETIIPGFDRSEFHVHQVFVPSKDGSTKIPMFIVSKKNI 475 (732)
Q Consensus 409 ~~~~ss~~~p~~~y~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~s~dG~~~i~~~~~~p~~~ 475 (732)
+...||.. .+-.+|..+|+. +..+....-+-+.-....-.++.+..... ..+.+|-+..+.+
T Consensus 382 -IASaSFDk--SVkLW~g~tGk~-lasfRGHv~~VYqvawsaDsRLlVS~SkD-sTLKvw~V~tkKl 443 (480)
T KOG0271|consen 382 -IASASFDK--SVKLWDGRTGKF-LASFRGHVAAVYQVAWSADSRLLVSGSKD-STLKVWDVRTKKL 443 (480)
T ss_pred -EEEeeccc--ceeeeeCCCcch-hhhhhhccceeEEEEeccCccEEEEcCCC-ceEEEEEeeeeee
Confidence 45667765 455667778862 33332110000100011112233333233 5788887776653
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.3e-09 Score=103.41 Aligned_cols=229 Identities=12% Similarity=0.138 Sum_probs=142.1
Q ss_pred CCEEEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecccccc-eeeeeEEEEeCCcEEEEEEecCCCCCCCCCC
Q 004766 130 GTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSW-FKFSSIAWTHDSKGFFYSRYPAPKEGKDMDA 208 (732)
Q Consensus 130 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~~~-~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~ 208 (732)
+...++.+..|+||++.. +. +-..++++||+++|+......+. ...-++++|||+++|+-.+
T Consensus 62 HsH~v~dv~~s~dg~~al-S~----swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGS------------ 124 (315)
T KOG0279|consen 62 HSHFVSDVVLSSDGNFAL-SA----SWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGS------------ 124 (315)
T ss_pred cceEecceEEccCCceEE-ec----cccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCC------------
Confidence 456688999999998654 32 33358999999999754322222 2357899999999998654
Q ss_pred CCcccCCcccEEEEEECCCCCCCCeEEEecCCC--CeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccc
Q 004766 209 GTETDSNLYHEFYYHFLGTKQSEDILCWKDPEH--PKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGF 286 (732)
Q Consensus 209 ~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~--~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~ 286 (732)
+...|.+|+.-+. +.++..++ ..|+.-+.|||...-.++.+.. . ...+-++|+.+-+
T Consensus 125 -------rDkTiklwnt~g~-----ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s-~--DktvKvWnl~~~~------ 183 (315)
T KOG0279|consen 125 -------RDKTIKLWNTLGV-----CKYTIHEDSHREWVSCVRFSPNESNPIIVSAS-W--DKTVKVWNLRNCQ------ 183 (315)
T ss_pred -------Ccceeeeeeeccc-----EEEEEecCCCcCcEEEEEEcCCCCCcEEEEcc-C--CceEEEEccCCcc------
Confidence 3446777776433 33332222 5688899999996333333221 1 2347777888732
Q ss_pred cccCCCCCcEEeeeccc--ceEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecCCEEE
Q 004766 287 KKRDGLLPFVKLIDGFD--AQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMI 364 (732)
Q Consensus 287 ~~~~~~~~~~~l~~~~~--~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~~l~ 364 (732)
.+...-+.. ..+..+||||..+.. ++..++++++|++.+++...+ +....+.++.++++.+.+
T Consensus 184 --------l~~~~~gh~~~v~t~~vSpDGslcas----Ggkdg~~~LwdL~~~k~lysl---~a~~~v~sl~fspnrywL 248 (315)
T KOG0279|consen 184 --------LRTTFIGHSGYVNTVTVSPDGSLCAS----GGKDGEAMLWDLNEGKNLYSL---EAFDIVNSLCFSPNRYWL 248 (315)
T ss_pred --------hhhccccccccEEEEEECCCCCEEec----CCCCceEEEEEccCCceeEec---cCCCeEeeEEecCCceeE
Confidence 111111111 123358999986553 455678999999988743333 224678889999844444
Q ss_pred EEEecCCeeEEEEEeCCCCceeeecccc-cce--------eeEeecccCCcEEEEEEec
Q 004766 365 VSYLSDVKYVLQIRDLKNGSLLHQLPIE-IGS--------VNAISARREDSVVFISFTS 414 (732)
Q Consensus 365 ~~~~~~g~~~l~~~d~~~g~~~~~l~~~-~g~--------v~~~~~s~d~~~l~~~~ss 414 (732)
..... ..|.+||++++..+..+.+. .+. .-+++++.||.+|+.-+++
T Consensus 249 ~~at~---~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td 304 (315)
T KOG0279|consen 249 CAATA---TSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTD 304 (315)
T ss_pred eeccC---CceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecC
Confidence 33333 34999999987765655543 111 2245677888888766655
|
|
| >PRK00175 metX homoserine O-acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=9.3e-11 Score=125.64 Aligned_cols=113 Identities=18% Similarity=0.140 Sum_probs=74.2
Q ss_pred CccEEEEEcCCCCccCCCC-----------cChhH---HHHHHhcCcEEEEEcccCC--CCCchhHHhc--cc---ccCC
Q 004766 480 SHPCLLYGYGGFNISVTPS-----------FSVSR---TILMRHLGAVFCIANIRGG--GEYGEEWHKG--GA---LAKK 538 (732)
Q Consensus 480 ~~P~vv~~hG~~~~~~~~~-----------~~~~~---~~~l~~~G~~v~~~~~rG~--g~~g~~~~~~--~~---~~~~ 538 (732)
..|.||++||..++..... |...+ ..++. .+|.|+++|.+|+ |..+...... +. ....
T Consensus 47 ~~p~vvl~HG~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~l~~-~~~~vi~~Dl~G~~~~s~~~~~~~~~~~~~~~~~~~ 125 (379)
T PRK00175 47 RSNAVLICHALTGDHHVAGPHSPDDPKPGWWDNMVGPGKPIDT-DRYFVICSNVLGGCKGSTGPSSINPDTGKPYGSDFP 125 (379)
T ss_pred CCCEEEEeCCcCCchhhcccccccCCCCcchhhccCCCCccCc-cceEEEeccCCCCCCCCCCCCCCCCCCCCcccCCCC
Confidence 3689999999887654211 22211 12334 7999999999983 2222211100 00 0011
Q ss_pred ccHHHHHHHHHHHHHHcCCCCCCc-EEEEecChhHHHHHHHHhhCCCeeeEEEEcCCc
Q 004766 539 QNCFDDFISASEYLISAGYTQSRK-LCIEGGSNGGLLVGACINQRPDLFGCALAHVGV 595 (732)
Q Consensus 539 ~~~~~D~~~~~~~l~~~~~~d~~~-i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~ 595 (732)
..+++|+.+.+..+++. ...++ ..++|+||||.++..++.++|++++++|+..+.
T Consensus 126 ~~~~~~~~~~~~~~l~~--l~~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~ 181 (379)
T PRK00175 126 VITIRDWVRAQARLLDA--LGITRLAAVVGGSMGGMQALEWAIDYPDRVRSALVIASS 181 (379)
T ss_pred cCCHHHHHHHHHHHHHH--hCCCCceEEEEECHHHHHHHHHHHhChHhhhEEEEECCC
Confidence 35678888877777665 23356 489999999999999999999999999887653
|
|
| >PLN02578 hydrolase | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.9e-10 Score=119.87 Aligned_cols=96 Identities=10% Similarity=-0.025 Sum_probs=66.6
Q ss_pred ccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCccHH----HHHHHHHHHHHHcC
Q 004766 481 HPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCF----DDFISASEYLISAG 556 (732)
Q Consensus 481 ~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~----~D~~~~~~~l~~~~ 556 (732)
.|.||++||..+.. ..|.. ....|+ ++|.|+++|+||.|....... ..+. +|+.+.++.+.
T Consensus 86 g~~vvliHG~~~~~--~~w~~-~~~~l~-~~~~v~~~D~~G~G~S~~~~~--------~~~~~~~a~~l~~~i~~~~--- 150 (354)
T PLN02578 86 GLPIVLIHGFGASA--FHWRY-NIPELA-KKYKVYALDLLGFGWSDKALI--------EYDAMVWRDQVADFVKEVV--- 150 (354)
T ss_pred CCeEEEECCCCCCH--HHHHH-HHHHHh-cCCEEEEECCCCCCCCCCccc--------ccCHHHHHHHHHHHHHHhc---
Confidence 36689999976643 22332 234566 789999999999887543211 1122 34444444332
Q ss_pred CCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCC
Q 004766 557 YTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVG 594 (732)
Q Consensus 557 ~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p 594 (732)
.+++.++|+|+||+++..++.++|++++++|+..+
T Consensus 151 ---~~~~~lvG~S~Gg~ia~~~A~~~p~~v~~lvLv~~ 185 (354)
T PLN02578 151 ---KEPAVLVGNSLGGFTALSTAVGYPELVAGVALLNS 185 (354)
T ss_pred ---cCCeEEEEECHHHHHHHHHHHhChHhcceEEEECC
Confidence 35799999999999999999999999999987654
|
|
| >PF03583 LIP: Secretory lipase ; InterPro: IPR005152 This entry represents a family of secreted lipases | Back alignment and domain information |
|---|
Probab=99.25 E-value=2e-10 Score=117.22 Aligned_cols=196 Identities=16% Similarity=0.110 Sum_probs=126.9
Q ss_pred HHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCccHHHHHHHHHHHHHH-cCCCCCCcEEEEecChhHHHHHHHHhh
Q 004766 503 RTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLIS-AGYTQSRKLCIEGGSNGGLLVGACINQ 581 (732)
Q Consensus 503 ~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~-~~~~d~~~i~i~G~S~GG~l~~~~~~~ 581 (732)
+..||+ +||+|+++||-|-|. .|.. ........-|.+.|++.+.. .+.....+++++|+|.||.-+++++..
T Consensus 19 l~~~L~-~GyaVv~pDY~Glg~---~y~~---~~~~a~avLD~vRAA~~~~~~~gl~~~~~v~l~GySqGG~Aa~~AA~l 91 (290)
T PF03583_consen 19 LAAWLA-RGYAVVAPDYEGLGT---PYLN---GRSEAYAVLDAVRAARNLPPKLGLSPSSRVALWGYSQGGQAALWAAEL 91 (290)
T ss_pred HHHHHH-CCCEEEecCCCCCCC---cccC---cHhHHHHHHHHHHHHHhcccccCCCCCCCEEEEeeCccHHHHHHHHHH
Confidence 356777 999999999998765 2211 11223445666666666655 355455799999999999999888754
Q ss_pred ----CCCe---eeEEEEcCCcccccccccCCCCCccc-----------ccc----------CCCC---------------
Q 004766 582 ----RPDL---FGCALAHVGVMDMLRYHKFTIGHAWV-----------SDF----------GCSE--------------- 618 (732)
Q Consensus 582 ----~p~~---f~a~v~~~p~~d~~~~~~~~~~~~~~-----------~~~----------g~p~--------------- 618 (732)
.||+ +.++++..|..|+..+.....+..+. ..| .++.
T Consensus 92 ~~~YApeL~~~l~Gaa~gg~~~dl~~~~~~~~~~~~~g~~~~~l~gl~~~yP~l~~~~~~~l~~~g~~~~~~~~~~c~~~ 171 (290)
T PF03583_consen 92 APSYAPELNRDLVGAAAGGPPADLAALLRALNGGPFAGLVPYALLGLAAAYPELDELLDSYLTPEGRALLDDARTRCLAD 171 (290)
T ss_pred hHHhCcccccceeEEeccCCccCHHHHHhccCCCccHhHHHHHHHHHHHhCccHHHHHHHHhhHHHHHHHHHHHhhhHHH
Confidence 4776 78899999988875443211110000 000 0000
Q ss_pred --------------------------CHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHH
Q 004766 619 --------------------------EEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLL 672 (732)
Q Consensus 619 --------------------------~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~ 672 (732)
++...+.+.+.+. ... .......|+||.||.+|..||+....+++
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l--~~~-------~~~~P~~Pv~i~~g~~D~vvP~~~~~~l~ 242 (290)
T PF03583_consen 172 IVAEYAFQDLFTGDTRYFKPGADLLADPAFRRALAENSL--GMG-------GDWTPTVPVLIYQGTADEVVPPADTDALV 242 (290)
T ss_pred HHHHhhhccccccchhccCChhhhhhhHHHHHHHHHhhc--ccc-------CCCCCCCCEEEEecCCCCCCChHHHHHHH
Confidence 0111111111111 000 01135679999999999999999999999
Q ss_pred HHHHHhhcCCCCCCCCC-CCEEEEEeCCCCCCCCCchHHHHHHHHHHHHHHHHHhCCC
Q 004766 673 ATMQYVLCTSLENSPQT-NPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLGAS 729 (732)
Q Consensus 673 ~~l~~~~~~~~~~~~~~-~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~~ 729 (732)
+++++. | .+++++.++..+|.... .......+.||...+...
T Consensus 243 ~~~c~~----------G~a~V~~~~~~~~~H~~~~-----~~~~~~a~~Wl~~rf~G~ 285 (290)
T PF03583_consen 243 AKWCAA----------GGADVEYVRYPGGGHLGAA-----FASAPDALAWLDDRFAGK 285 (290)
T ss_pred HHHHHc----------CCCCEEEEecCCCChhhhh-----hcCcHHHHHHHHHHHCCC
Confidence 999998 8 89999999999997532 223345678998887554
|
Family members include the LIP lipases from Candida albicans, which are expressed and secreted during the infection cycle of these pathogens [].; GO: 0004806 triglyceride lipase activity, 0016042 lipid catabolic process |
| >PRK07581 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.25 E-value=6.9e-11 Score=125.17 Aligned_cols=112 Identities=15% Similarity=0.116 Sum_probs=66.4
Q ss_pred CccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccc---cCCccHH-HHHHHHHHHHHH-
Q 004766 480 SHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGAL---AKKQNCF-DDFISASEYLIS- 554 (732)
Q Consensus 480 ~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~---~~~~~~~-~D~~~~~~~l~~- 554 (732)
..|+||+.||..+....+.+.......|...+|.|+++|.||.|............ .....++ +|+.+....|.+
T Consensus 40 ~~~~vll~~~~~~~~~~~~~~~~~~~~l~~~~~~vi~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 119 (339)
T PRK07581 40 KDNAILYPTWYSGTHQDNEWLIGPGRALDPEKYFIIIPNMFGNGLSSSPSNTPAPFNAARFPHVTIYDNVRAQHRLLTEK 119 (339)
T ss_pred CCCEEEEeCCCCCCcccchhhccCCCccCcCceEEEEecCCCCCCCCCCCCCCCCCCCCCCCceeHHHHHHHHHHHHHHH
Confidence 44677777766544332222100001344479999999999988643221100000 0001123 444443444544
Q ss_pred cCCCCCCcE-EEEecChhHHHHHHHHhhCCCeeeEEEEcCC
Q 004766 555 AGYTQSRKL-CIEGGSNGGLLVGACINQRPDLFGCALAHVG 594 (732)
Q Consensus 555 ~~~~d~~~i-~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p 594 (732)
.+. +++ .++|+|+||+++..++.++|++++++|+.++
T Consensus 120 lgi---~~~~~lvG~S~GG~va~~~a~~~P~~V~~Lvli~~ 157 (339)
T PRK07581 120 FGI---ERLALVVGWSMGAQQTYHWAVRYPDMVERAAPIAG 157 (339)
T ss_pred hCC---CceEEEEEeCHHHHHHHHHHHHCHHHHhhheeeec
Confidence 343 574 7899999999999999999999999887644
|
|
| >PRK10439 enterobactin/ferric enterobactin esterase; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=6.6e-10 Score=118.61 Aligned_cols=204 Identities=17% Similarity=0.153 Sum_probs=127.1
Q ss_pred EEEEEEEcc-CCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcC----cEEEEEcccCCCCC
Q 004766 451 VHQVFVPSK-DGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLG----AVFCIANIRGGGEY 525 (732)
Q Consensus 451 ~~~~~~~s~-dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G----~~v~~~~~rG~g~~ 525 (732)
.+.+.+.|. -| .+..++++.|+++. .+++|+|++.||.........+ ..+..+++ +| .+++++|...+...
T Consensus 180 ~~~~~~~S~~Lg-~~r~v~VY~P~~y~-~~~~PvlyllDG~~w~~~~~~~-~~ld~li~-~g~i~P~ivV~id~~~~~~R 255 (411)
T PRK10439 180 AKEIIWKSERLG-NSRRVWIYTTGDAA-PEERPLAILLDGQFWAESMPVW-PALDSLTH-RGQLPPAVYLLIDAIDTTHR 255 (411)
T ss_pred eEEEEEEccccC-CceEEEEEECCCCC-CCCCCEEEEEECHHhhhcCCHH-HHHHHHHH-cCCCCceEEEEECCCCcccc
Confidence 344555553 56 78899999998875 5689999999998654322221 22234444 66 45677876322211
Q ss_pred chhHHhcccccCCccHHHHHH--HHHHHHHHc--CCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCccccccc
Q 004766 526 GEEWHKGGALAKKQNCFDDFI--SASEYLISA--GYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRY 601 (732)
Q Consensus 526 g~~~~~~~~~~~~~~~~~D~~--~~~~~l~~~--~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~ 601 (732)
..+ ......|.+++ ..+-++.++ -..|+++.+|.|.||||+.++.++.++|++|.++++.+|.+=+.
T Consensus 256 ~~e-------l~~~~~f~~~l~~eLlP~I~~~y~~~~d~~~~~IaG~S~GGl~AL~~al~~Pd~Fg~v~s~Sgs~ww~-- 326 (411)
T PRK10439 256 SQE-------LPCNADFWLAVQQELLPQVRAIAPFSDDADRTVVAGQSFGGLAALYAGLHWPERFGCVLSQSGSFWWP-- 326 (411)
T ss_pred ccc-------CCchHHHHHHHHHHHHHHHHHhCCCCCCccceEEEEEChHHHHHHHHHHhCcccccEEEEeccceecC--
Confidence 111 01112344333 233444443 23588999999999999999999999999999999999853110
Q ss_pred ccCCCCCccccccCCCCCHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhcC
Q 004766 602 HKFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCT 681 (732)
Q Consensus 602 ~~~~~~~~~~~~~g~p~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~ 681 (732)
...+ .......+.+.+. .... ....++|.+|..|... +....++++.|+++
T Consensus 327 ----------~~~~-~~~~~l~~~l~~~----~~~~----------~~lr~~i~~G~~E~~~-~~~~~~l~~~L~~~--- 377 (411)
T PRK10439 327 ----------HRGG-QQEGVLLEQLKAG----EVSA----------RGLRIVLEAGRREPMI-MRANQALYAQLHPA--- 377 (411)
T ss_pred ----------CccC-CchhHHHHHHHhc----ccCC----------CCceEEEeCCCCCchH-HHHHHHHHHHHHHC---
Confidence 0001 0111111222221 0111 2346899999988543 56789999999998
Q ss_pred CCCCCCCCCCEEEEEeCCCCCCC
Q 004766 682 SLENSPQTNPIIGRIERKAGHGV 704 (732)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~~gH~~ 704 (732)
|.++.+.++++ ||..
T Consensus 378 -------G~~~~~~~~~G-GHd~ 392 (411)
T PRK10439 378 -------GHSVFWRQVDG-GHDA 392 (411)
T ss_pred -------CCcEEEEECCC-CcCH
Confidence 99999999986 7954
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.4e-08 Score=102.52 Aligned_cols=251 Identities=15% Similarity=0.177 Sum_probs=151.6
Q ss_pred CCEEEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCc-eeccccc--ceeeeeEEEEeCCcEEEEEEecCCCCCCCC
Q 004766 130 GTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQI-VEADALS--WFKFSSIAWTHDSKGFFYSRYPAPKEGKDM 206 (732)
Q Consensus 130 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~-~~~~~~~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~~ 206 (732)
+...+.-.++||.|-||| .|+...+++|||....+ .|..... ......++|++||++|+.+-....
T Consensus 58 H~~~vtVAkySPsG~yiA-----SGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGre------ 126 (603)
T KOG0318|consen 58 HAHQVTVAKYSPSGFYIA-----SGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRE------ 126 (603)
T ss_pred ccceeEEEEeCCCceEEe-----ecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCcc------
Confidence 345667788999999888 55666789999986644 3332221 113478999999999998753221
Q ss_pred CCCCcccCCcccEEEEEECCCC---------------------------CCC-CeEEEecC---------CCCeeEEEeE
Q 004766 207 DAGTETDSNLYHEFYYHFLGTK---------------------------QSE-DILCWKDP---------EHPKYIFSGH 249 (732)
Q Consensus 207 ~~~~~~~~~~~~~v~~~~lgt~---------------------------~~~-~~~v~~~~---------~~~~~~~~~~ 249 (732)
+...++.|+-|+. ... -+.+|++| ++..|+..+.
T Consensus 127 ---------rfg~~F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VR 197 (603)
T KOG0318|consen 127 ---------RFGHVFLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVR 197 (603)
T ss_pred ---------ceeEEEEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEE
Confidence 1112223322221 111 13345543 2345677899
Q ss_pred EecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCCCCcEEeee--cccc-eEE-EEEecCCeEEEEeCCCCC
Q 004766 250 VTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLID--GFDA-QYE-VIANDDTVFTFLTNKDAP 325 (732)
Q Consensus 250 ~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~-~~~-~~s~dg~~l~~~s~~~~~ 325 (732)
+||||...+-.+.+ ..++++|-.+++ ..-.+-. .... .+. .|+||+.+++-.+...
T Consensus 198 ysPDG~~Fat~gsD-----gki~iyDGktge-------------~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDk-- 257 (603)
T KOG0318|consen 198 YSPDGSRFATAGSD-----GKIYIYDGKTGE-------------KVGELEDSDAHKGSIFALSWSPDSTQFLTVSADK-- 257 (603)
T ss_pred ECCCCCeEEEecCC-----ccEEEEcCCCcc-------------EEEEecCCCCccccEEEEEECCCCceEEEecCCc--
Confidence 99999998766544 348899876653 1222221 1112 232 5999999988655432
Q ss_pred CceEEEEeCCCCCCceEeccCC-CCCceeEEEEecCCEEEEEEecCCeeEEEEEeCCCCceeeecccccceeeEeecccC
Q 004766 326 KYKIIRVDLKEPNDWFEVIPEA-ERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARRE 404 (732)
Q Consensus 326 ~~~l~~~d~~~~~~~~~l~~~~-~~~~l~~~~~~~~~~l~~~~~~~g~~~l~~~d~~~g~~~~~l~~~~g~v~~~~~s~d 404 (732)
.+-.+|+.+....+++.-.. -+..+-+..|.+ ++|+...... .|-.++++++..++.+..+.-.+..++.++|
T Consensus 258 --t~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqk-d~lItVSl~G---~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d 331 (603)
T KOG0318|consen 258 --TIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQK-DHLITVSLSG---TINYLNPSDPSVLKVISGHNKSITALTVSPD 331 (603)
T ss_pred --eEEEEEeeccceEEEeecCCchhceEEEEEEeC-CeEEEEEcCc---EEEEecccCCChhheecccccceeEEEEcCC
Confidence 34455666655334433222 123444667776 6766555443 5777788777766666666778888999999
Q ss_pred CcEEEEEEecCCCCceEEEEECCCCC
Q 004766 405 DSVVFISFTSFLIPGIVYQCNLKTET 430 (732)
Q Consensus 405 ~~~l~~~~ss~~~p~~~y~~d~~~~~ 430 (732)
+++++ +. .--+.+-.++..+|.
T Consensus 332 ~~~i~-Sg---syDG~I~~W~~~~g~ 353 (603)
T KOG0318|consen 332 GKTIY-SG---SYDGHINSWDSGSGT 353 (603)
T ss_pred CCEEE-ee---ccCceEEEEecCCcc
Confidence 97554 33 234678888887764
|
|
| >PRK10349 carboxylesterase BioH; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.2e-10 Score=116.20 Aligned_cols=94 Identities=13% Similarity=0.054 Sum_probs=67.5
Q ss_pred cEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCccHHHHHHHHHHHHHHcCCCCCC
Q 004766 482 PCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSR 561 (732)
Q Consensus 482 P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ 561 (732)
|.||++||..+.+ ..|.. ....|. ..|.|+++|.||.|.... ....+++++.. .+.+. ..+
T Consensus 14 ~~ivllHG~~~~~--~~w~~-~~~~L~-~~~~vi~~Dl~G~G~S~~---------~~~~~~~~~~~---~l~~~---~~~ 74 (256)
T PRK10349 14 VHLVLLHGWGLNA--EVWRC-IDEELS-SHFTLHLVDLPGFGRSRG---------FGALSLADMAE---AVLQQ---APD 74 (256)
T ss_pred CeEEEECCCCCCh--hHHHH-HHHHHh-cCCEEEEecCCCCCCCCC---------CCCCCHHHHHH---HHHhc---CCC
Confidence 5699999976553 24544 445566 679999999999885421 11234455444 34433 246
Q ss_pred cEEEEecChhHHHHHHHHhhCCCeeeEEEEcCC
Q 004766 562 KLCIEGGSNGGLLVGACINQRPDLFGCALAHVG 594 (732)
Q Consensus 562 ~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p 594 (732)
++.++|+|+||+++..++.++|++++.+|+..+
T Consensus 75 ~~~lvGhS~Gg~ia~~~a~~~p~~v~~lili~~ 107 (256)
T PRK10349 75 KAIWLGWSLGGLVASQIALTHPERVQALVTVAS 107 (256)
T ss_pred CeEEEEECHHHHHHHHHHHhChHhhheEEEecC
Confidence 899999999999999999999999999987655
|
|
| >KOG4667 consensus Predicted esterase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.5e-10 Score=102.75 Aligned_cols=199 Identities=16% Similarity=0.116 Sum_probs=132.5
Q ss_pred CCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCccHHHHHHHHHHHHHHcCC
Q 004766 478 DGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGY 557 (732)
Q Consensus 478 ~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~ 557 (732)
.+..-++|++||.- +.-...+....+..+++.|+.++.+|++|-|+.-..++-. +.....+|+-.+++++.....
T Consensus 30 tgs~e~vvlcHGfr-S~Kn~~~~~~vA~~~e~~gis~fRfDF~GnGeS~gsf~~G----n~~~eadDL~sV~q~~s~~nr 104 (269)
T KOG4667|consen 30 TGSTEIVVLCHGFR-SHKNAIIMKNVAKALEKEGISAFRFDFSGNGESEGSFYYG----NYNTEADDLHSVIQYFSNSNR 104 (269)
T ss_pred cCCceEEEEeeccc-cccchHHHHHHHHHHHhcCceEEEEEecCCCCcCCccccC----cccchHHHHHHHHHHhccCce
Confidence 36678999999953 3323344455677888899999999999999876666532 222345999999999876432
Q ss_pred CCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCcccccccccCCCCC---ccccccC------------CCCCHHH
Q 004766 558 TQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGH---AWVSDFG------------CSEEEEE 622 (732)
Q Consensus 558 ~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~---~~~~~~g------------~p~~~~~ 622 (732)
+ --+|.|||-||..+...+..+++ ..-+|..+|-.|.........++ .|..+-| .-..++.
T Consensus 105 ~---v~vi~gHSkGg~Vvl~ya~K~~d-~~~viNcsGRydl~~~I~eRlg~~~l~~ike~Gfid~~~rkG~y~~rvt~eS 180 (269)
T KOG4667|consen 105 V---VPVILGHSKGGDVVLLYASKYHD-IRNVINCSGRYDLKNGINERLGEDYLERIKEQGFIDVGPRKGKYGYRVTEES 180 (269)
T ss_pred E---EEEEEeecCccHHHHHHHHhhcC-chheEEcccccchhcchhhhhcccHHHHHHhCCceecCcccCCcCceecHHH
Confidence 2 34789999999999999999877 55566666766665544212221 1222211 1111221
Q ss_pred HHH-HH-hcCcc-cCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeCC
Q 004766 623 FYW-LI-KYSPL-HNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERK 699 (732)
Q Consensus 623 ~~~-~~-~~sp~-~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 699 (732)
... +. ..+|. ..++ ..+|+|-+||..|..||.+.+.+|++.+. + ..|.+.++
T Consensus 181 lmdrLntd~h~aclkId-----------~~C~VLTvhGs~D~IVPve~AkefAk~i~------------n--H~L~iIEg 235 (269)
T KOG4667|consen 181 LMDRLNTDIHEACLKID-----------KQCRVLTVHGSEDEIVPVEDAKEFAKIIP------------N--HKLEIIEG 235 (269)
T ss_pred HHHHHhchhhhhhcCcC-----------ccCceEEEeccCCceeechhHHHHHHhcc------------C--CceEEecC
Confidence 111 10 01111 1122 57999999999999999999999988776 3 47888899
Q ss_pred CCCCCCCchHH
Q 004766 700 AGHGVGLPTQK 710 (732)
Q Consensus 700 ~gH~~~~~~~~ 710 (732)
+.|.+...+.+
T Consensus 236 ADHnyt~~q~~ 246 (269)
T KOG4667|consen 236 ADHNYTGHQSQ 246 (269)
T ss_pred CCcCccchhhh
Confidence 99999775543
|
|
| >PRK08775 homoserine O-acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.9e-10 Score=121.75 Aligned_cols=74 Identities=15% Similarity=0.047 Sum_probs=53.0
Q ss_pred cCcEEEEEcccCCCCCchhHHhcccccCCccHHHHHHHHHHHHHHcCCCCCCc-EEEEecChhHHHHHHHHhhCCCeeeE
Q 004766 510 LGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSRK-LCIEGGSNGGLLVGACINQRPDLFGC 588 (732)
Q Consensus 510 ~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~-i~i~G~S~GG~l~~~~~~~~p~~f~a 588 (732)
.+|.|+++|.||.|+... ....++|+.+.+..+++. ..-++ +.++|+||||+++..++.++|+++++
T Consensus 98 ~~~~Vi~~Dl~G~g~s~~----------~~~~~~~~a~dl~~ll~~--l~l~~~~~lvG~SmGG~vA~~~A~~~P~~V~~ 165 (343)
T PRK08775 98 ARFRLLAFDFIGADGSLD----------VPIDTADQADAIALLLDA--LGIARLHAFVGYSYGALVGLQFASRHPARVRT 165 (343)
T ss_pred cccEEEEEeCCCCCCCCC----------CCCCHHHHHHHHHHHHHH--cCCCcceEEEEECHHHHHHHHHHHHChHhhhe
Confidence 689999999999764311 112344555544444443 12234 57999999999999999999999999
Q ss_pred EEEcCCc
Q 004766 589 ALAHVGV 595 (732)
Q Consensus 589 ~v~~~p~ 595 (732)
+|+..+.
T Consensus 166 LvLi~s~ 172 (343)
T PRK08775 166 LVVVSGA 172 (343)
T ss_pred EEEECcc
Confidence 9887664
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.20 E-value=5.4e-08 Score=100.92 Aligned_cols=243 Identities=12% Similarity=0.013 Sum_probs=142.8
Q ss_pred EeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccC
Q 004766 135 IKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDS 214 (732)
Q Consensus 135 ~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~ 214 (732)
..+.|||||+.++.+... ...|++||+.+++.+...........++|+|||+.++.+..
T Consensus 34 ~~l~~~~dg~~l~~~~~~----~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~----------------- 92 (300)
T TIGR03866 34 RGITLSKDGKLLYVCASD----SDTIQVIDLATGEVIGTLPSGPDPELFALHPNGKILYIANE----------------- 92 (300)
T ss_pred CceEECCCCCEEEEEECC----CCeEEEEECCCCcEEEeccCCCCccEEEECCCCCEEEEEcC-----------------
Confidence 368899999987555321 24799999999886532211112356899999998776532
Q ss_pred CcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCCCC
Q 004766 215 NLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLP 294 (732)
Q Consensus 215 ~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~ 294 (732)
....|+++++.+.. .+..+.... ....+.++|||+++++..... ..++.+|..++. .
T Consensus 93 -~~~~l~~~d~~~~~--~~~~~~~~~---~~~~~~~~~dg~~l~~~~~~~----~~~~~~d~~~~~-------------~ 149 (300)
T TIGR03866 93 -DDNLVTVIDIETRK--VLAEIPVGV---EPEGMAVSPDGKIVVNTSETT----NMAHFIDTKTYE-------------I 149 (300)
T ss_pred -CCCeEEEEECCCCe--EEeEeeCCC---CcceEEECCCCCEEEEEecCC----CeEEEEeCCCCe-------------E
Confidence 22368889987642 112222111 124689999999988765321 235566776532 0
Q ss_pred cEEeeecccceEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCC-----CCCceeEEEEecCC-EEEEEEe
Q 004766 295 FVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEA-----ERDVLESATAVNLN-QMIVSYL 368 (732)
Q Consensus 295 ~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~-----~~~~l~~~~~~~~~-~l~~~~~ 368 (732)
...+..+.......|+++|+.|++.+.. ...|..+|+++++....+..+. ......++.+++++ .+++...
T Consensus 150 ~~~~~~~~~~~~~~~s~dg~~l~~~~~~---~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~ 226 (300)
T TIGR03866 150 VDNVLVDQRPRFAEFTADGKELWVSSEI---GGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALG 226 (300)
T ss_pred EEEEEcCCCccEEEECCCCCEEEEEcCC---CCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcC
Confidence 1111112222234589999888765433 2468889988765223222111 01122346667654 4454443
Q ss_pred cCCeeEEEEEeCCCCceeeecccccceeeEeecccCCcEEEEEEecCCCCceEEEEECCCCC
Q 004766 369 SDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 430 (732)
Q Consensus 369 ~~g~~~l~~~d~~~g~~~~~l~~~~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~~ 430 (732)
.+ .+|.+||+.+++....+.. ...+..++++++++.++.+. ..-..+.++|+.+++
T Consensus 227 ~~--~~i~v~d~~~~~~~~~~~~-~~~~~~~~~~~~g~~l~~~~---~~~~~i~v~d~~~~~ 282 (300)
T TIGR03866 227 PA--NRVAVVDAKTYEVLDYLLV-GQRVWQLAFTPDEKYLLTTN---GVSNDVSVIDVAALK 282 (300)
T ss_pred CC--CeEEEEECCCCcEEEEEEe-CCCcceEEECCCCCEEEEEc---CCCCeEEEEECCCCc
Confidence 33 4689999987776444432 23455778899998776432 123479999998875
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >PF00756 Esterase: Putative esterase; InterPro: IPR000801 This family contains several seemingly unrelated proteins, including human esterase D; mycobacterial antigen 85, which is responsible for the high affinity of mycobacteria to fibronectin; Corynebacterium glutamicum major secreted protein PS1; and hypothetical proteins from Escherichia coli, yeast, mycobacteria and Haemophilus influenzae | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.3e-11 Score=122.96 Aligned_cols=137 Identities=17% Similarity=0.218 Sum_probs=92.7
Q ss_pred CCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcC----cEEEEEcccCCCCCchhHHhc----
Q 004766 461 GSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLG----AVFCIANIRGGGEYGEEWHKG---- 532 (732)
Q Consensus 461 G~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G----~~v~~~~~rG~g~~g~~~~~~---- 532 (732)
| ..+.++++.|+++...+++|+|++.||................+++ .| .++++++.-+.+.....|+..
T Consensus 5 g-~~~~~~VylP~~y~~~~~~PvlylldG~~~~~~~~~~~~~~~~~~~-~~~~~~~iiV~i~~~~~~~~~~~~~~~~~~~ 82 (251)
T PF00756_consen 5 G-RDRRVWVYLPPGYDPSKPYPVLYLLDGQSGWFRNGNAQEALDRLIA-EGKIPPMIIVVIPNGDNSRFYTSWYLPAGSS 82 (251)
T ss_dssp T-EEEEEEEEECTTGGTTTTEEEEEEESHTTHHHHHHHHHHHHHHHHH-HHTSEEEEEEEEESSSTSSTTSBTTSSBCTT
T ss_pred C-CeEEEEEEECCCCCCCCCCEEEEEccCCccccccchHHHHHHHHHH-hCCCCceEEEEEecccccccccccccccccc
Confidence 5 6889999999998778999999999995110000011111223344 44 455555554444333334421
Q ss_pred --ccccCCccHHHHHH--HHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCccccc
Q 004766 533 --GALAKKQNCFDDFI--SASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDML 599 (732)
Q Consensus 533 --~~~~~~~~~~~D~~--~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~ 599 (732)
.....+...+.+++ +.+.++.++--+++++.+|+|+|+||+.++.++.++|++|.++++.+|.++..
T Consensus 83 ~~~~~~~~~~~~~~~l~~el~p~i~~~~~~~~~~~~i~G~S~GG~~Al~~~l~~Pd~F~~~~~~S~~~~~~ 153 (251)
T PF00756_consen 83 RRADDSGGGDAYETFLTEELIPYIEANYRTDPDRRAIAGHSMGGYGALYLALRHPDLFGAVIAFSGALDPS 153 (251)
T ss_dssp CBCTSTTTHHHHHHHHHTHHHHHHHHHSSEEECCEEEEEETHHHHHHHHHHHHSTTTESEEEEESEESETT
T ss_pred cccccCCCCcccceehhccchhHHHHhcccccceeEEeccCCCcHHHHHHHHhCccccccccccCcccccc
Confidence 12223334566666 46777777766777779999999999999999999999999999999987764
|
; PDB: 3LS2_A 1VA5_B 1DQZ_B 3HRH_A 1DQY_A 2GZR_A 2GZS_A 3GFF_A 1R88_A 3E4D_D .... |
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.20 E-value=6.7e-10 Score=110.33 Aligned_cols=232 Identities=20% Similarity=0.185 Sum_probs=144.6
Q ss_pred CCEEEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceeccccc--ceeeeeEEEEeCCcEEEEEEecCCCCCCCCC
Q 004766 130 GTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALS--WFKFSSIAWTHDSKGFFYSRYPAPKEGKDMD 207 (732)
Q Consensus 130 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~ 207 (732)
+...+..+.||||.++|.-. +-+| .+++||+.+|+.+..-.. +...++.+|-|||.+++..+.
T Consensus 268 h~~~V~yi~wSPDdryLlaC---g~~e--~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~---------- 332 (519)
T KOG0293|consen 268 HSQPVSYIMWSPDDRYLLAC---GFDE--VLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSP---------- 332 (519)
T ss_pred ccCceEEEEECCCCCeEEec---CchH--heeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCC----------
Confidence 34567889999999998744 2233 499999999985432211 223478999999999776532
Q ss_pred CCCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCccccc
Q 004766 208 AGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFK 287 (732)
Q Consensus 208 ~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~ 287 (732)
...++.|+++.... --++....+ -+..++.++||++++....+ .++.+++.++..+
T Consensus 333 ---------dr~i~~wdlDgn~~---~~W~gvr~~-~v~dlait~Dgk~vl~v~~d-----~~i~l~~~e~~~d------ 388 (519)
T KOG0293|consen 333 ---------DRTIIMWDLDGNIL---GNWEGVRDP-KVHDLAITYDGKYVLLVTVD-----KKIRLYNREARVD------ 388 (519)
T ss_pred ---------CCcEEEecCCcchh---hcccccccc-eeEEEEEcCCCcEEEEEecc-----cceeeechhhhhh------
Confidence 24578888865421 123332222 35689999999999877632 4577777765321
Q ss_pred ccCCCCCcEEeeecccceEE-EEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEec-CCEEEE
Q 004766 288 KRDGLLPFVKLIDGFDAQYE-VIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVN-LNQMIV 365 (732)
Q Consensus 288 ~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~-~~~l~~ 365 (732)
+.+......... .+|.||+. ++.|.. ...+..+|++...-.+....+.....+-.-.+.. ++.+++
T Consensus 389 --------r~lise~~~its~~iS~d~k~--~LvnL~--~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fia 456 (519)
T KOG0293|consen 389 --------RGLISEEQPITSFSISKDGKL--ALVNLQ--DQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIA 456 (519)
T ss_pred --------hccccccCceeEEEEcCCCcE--EEEEcc--cCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEE
Confidence 112222222222 35666653 334432 3357888887544222333333222222222222 257888
Q ss_pred EEecCCeeEEEEEeCCCCceeeecccccceeeEeecccCCcEEEEEEec
Q 004766 366 SYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTS 414 (732)
Q Consensus 366 ~~~~~g~~~l~~~d~~~g~~~~~l~~~~g~v~~~~~s~d~~~l~~~~ss 414 (732)
+.++| ++||+|+..+|+.+..|+.+...|..++++|...+++.+.+.
T Consensus 457 SGSED--~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasD 503 (519)
T KOG0293|consen 457 SGSED--SKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASD 503 (519)
T ss_pred ecCCC--ceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCC
Confidence 88888 689999999999888888778888888998888777655443
|
|
| >KOG3043 consensus Predicted hydrolase related to dienelactone hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.9e-10 Score=106.51 Aligned_cols=185 Identities=16% Similarity=0.180 Sum_probs=128.3
Q ss_pred cEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCC----CCC----chhHHhcccccCCccHHHHHHHHHHHHH
Q 004766 482 PCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGG----GEY----GEEWHKGGALAKKQNCFDDFISASEYLI 553 (732)
Q Consensus 482 P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~----g~~----g~~~~~~~~~~~~~~~~~D~~~~~~~l~ 553 (732)
-+||.+---||.+.. . -...+..++..||.|++||+-.| .+. -+.|.+ +......+.|+.+.++||.
T Consensus 40 ~~li~i~DvfG~~~~-n-~r~~Adk~A~~Gy~v~vPD~~~Gdp~~~~~~~~~~~~w~~---~~~~~~~~~~i~~v~k~lk 114 (242)
T KOG3043|consen 40 KVLIVIQDVFGFQFP-N-TREGADKVALNGYTVLVPDFFRGDPWSPSLQKSERPEWMK---GHSPPKIWKDITAVVKWLK 114 (242)
T ss_pred eEEEEEEeeeccccH-H-HHHHHHHHhcCCcEEEcchhhcCCCCCCCCChhhhHHHHh---cCCcccchhHHHHHHHHHH
Confidence 355555554554221 0 11234556668999999998554 111 122443 3344567899999999999
Q ss_pred HcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCcccccccccCCCCCccccccCCCCCHHHHHHHHhcCccc
Q 004766 554 SAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHAWVSDFGCSEEEEEFYWLIKYSPLH 633 (732)
Q Consensus 554 ~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~sp~~ 633 (732)
.+| ++.+||++|+++||-++..+....| +|.|+|+..|.. .+.++.
T Consensus 115 ~~g--~~kkIGv~GfCwGak~vv~~~~~~~-~f~a~v~~hps~---------------------~d~~D~---------- 160 (242)
T KOG3043|consen 115 NHG--DSKKIGVVGFCWGAKVVVTLSAKDP-EFDAGVSFHPSF---------------------VDSADI---------- 160 (242)
T ss_pred HcC--CcceeeEEEEeecceEEEEeeccch-hheeeeEecCCc---------------------CChhHH----------
Confidence 775 4679999999999998888888766 899998766621 121111
Q ss_pred CCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeCCCCCCCCC-------
Q 004766 634 NVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGL------- 706 (732)
Q Consensus 634 ~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~------- 706 (732)
. .++.|+|++.|+.|..||+.....+-++|... . ....++.+|++.+||+..
T Consensus 161 --~----------~vk~Pilfl~ae~D~~~p~~~v~~~ee~lk~~-------~--~~~~~v~~f~g~~HGf~~~r~~~~~ 219 (242)
T KOG3043|consen 161 --A----------NVKAPILFLFAELDEDVPPKDVKAWEEKLKEN-------P--AVGSQVKTFSGVGHGFVARRANISS 219 (242)
T ss_pred --h----------cCCCCEEEEeecccccCCHHHHHHHHHHHhcC-------c--ccceeEEEcCCccchhhhhccCCCC
Confidence 1 15679999999999999999999998888865 1 222689999999999862
Q ss_pred chHH--HHHHHHHHHHHHHHHh
Q 004766 707 PTQK--MIDEAADRYGFMAKML 726 (732)
Q Consensus 707 ~~~~--~~~~~~~~~~fl~~~l 726 (732)
|+.+ .-+.+++++.||.++|
T Consensus 220 Ped~~~~eea~~~~~~Wf~~y~ 241 (242)
T KOG3043|consen 220 PEDKKAAEEAYQRFISWFKHYL 241 (242)
T ss_pred hhHHHHHHHHHHHHHHHHHHhh
Confidence 3222 2356677889998876
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.18 E-value=3e-09 Score=104.84 Aligned_cols=258 Identities=15% Similarity=0.074 Sum_probs=142.9
Q ss_pred eEEeCCCCcCCC-----CCEEEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecccccce--eeeeEEEEe---
Q 004766 118 KVLLDPNTLSDD-----GTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWF--KFSSIAWTH--- 187 (732)
Q Consensus 118 ~~l~D~~~l~~~-----~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~~~~--~~~~~~Wsp--- 187 (732)
-.|.|+++.++- +..-+..++|||||++|| .|....+|.+||.++|+.+-.++.+- .+.+++|-|
T Consensus 139 vR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iA-----SG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl 213 (480)
T KOG0271|consen 139 VRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIA-----SGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHL 213 (480)
T ss_pred EEeeccCCCCcceeecCCccEEEEEEECCCcchhh-----ccccCCeEEEecCCCCCcccccccCcccceeEEeeccccc
Confidence 346688766543 344577899999999999 55556789999999988653332211 136778854
Q ss_pred --CCcEEEEEEecCCCCCC---------------------CCC-CCCcccCCcccEEEEEECCCCCCCCeEEEecCCCCe
Q 004766 188 --DSKGFFYSRYPAPKEGK---------------------DMD-AGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPK 243 (732)
Q Consensus 188 --Dg~~l~y~~~~~~~~~~---------------------~~~-~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~ 243 (732)
..+.|+-.+.++.-... .|+ .+-.........|.+|+...+.- +-+...+..
T Consensus 214 ~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~----~r~lkGHah 289 (480)
T KOG0271|consen 214 VPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKL----CRELKGHAH 289 (480)
T ss_pred CCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCceEEecCCCceEEEEEccchhH----HHhhcccch
Confidence 45555544433311000 111 11112222333444444433210 000011122
Q ss_pred eEEEeEEe-----------cCCcE-------------------------EEEEEecCCcceEEEEEEeCCCCCCCccccc
Q 004766 244 YIFSGHVT-----------EDGQY-------------------------LVMCIEENCDPVNKVYYCDLSALPEGLEGFK 287 (732)
Q Consensus 244 ~~~~~~~S-----------pDg~~-------------------------l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~ 287 (732)
++..++.| |-|++ |+ +.++ ...+++++....
T Consensus 290 wvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlV-SgsD----d~tlflW~p~~~-------- 356 (480)
T KOG0271|consen 290 WVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLV-SGSD----DFTLFLWNPFKS-------- 356 (480)
T ss_pred heeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeE-EecC----CceEEEeccccc--------
Confidence 23233322 33333 32 2221 245777764321
Q ss_pred ccCCCCCcEEeeecccc-eEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecCCEEEEE
Q 004766 288 KRDGLLPFVKLIDGFDA-QYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVS 366 (732)
Q Consensus 288 ~~~~~~~~~~l~~~~~~-~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~~l~~~ 366 (732)
.+|..+++..-.. ....||||++.++-.+-+ ..+-+++..+++-...+-.|- ..+..+.|+.|.+|+++
T Consensus 357 ----kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFD----kSVkLW~g~tGk~lasfRGHv--~~VYqvawsaDsRLlVS 426 (480)
T KOG0271|consen 357 ----KKPITRMTGHQALVNHVSFSPDGRYIASASFD----KSVKLWDGRTGKFLASFRGHV--AAVYQVAWSADSRLLVS 426 (480)
T ss_pred ----ccchhhhhchhhheeeEEECCCccEEEEeecc----cceeeeeCCCcchhhhhhhcc--ceeEEEEeccCccEEEE
Confidence 2234444432221 123599999876643332 246666777776333333332 45778999988899999
Q ss_pred EecCCeeEEEEEeCCCCceeeecccccceeeEeecccCCcEEE
Q 004766 367 YLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVF 409 (732)
Q Consensus 367 ~~~~g~~~l~~~d~~~g~~~~~l~~~~g~v~~~~~s~d~~~l~ 409 (732)
.+.| +.|.+|++.+.+....|+.+...|..+.++|||..+.
T Consensus 427 ~SkD--sTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~ 467 (480)
T KOG0271|consen 427 GSKD--STLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVA 467 (480)
T ss_pred cCCC--ceEEEEEeeeeeecccCCCCCceEEEEEecCCCceee
Confidence 9988 6899999986665556665566788899999998653
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.8e-08 Score=100.69 Aligned_cols=304 Identities=12% Similarity=0.125 Sum_probs=151.5
Q ss_pred EeCCEEEEEEEcCCCCeeEEEEEeCCCCCceEEeCCCCcCCCCCEEEEeEEECCCCcEEEEEEeccCCceEEEEEEECCC
Q 004766 88 KRGNKYFYFHNTGLQPQSVLYVQDSLDAKAKVLLDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIED 167 (732)
Q Consensus 88 ~~g~~~~~~~~~~~~~~~~l~~r~~~~~~~~~l~D~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~ 167 (732)
.+|.++.|.....+. ..||..+..+++.++|+|...-. . .+..+||+.+.|.|..+ + .+|+.+||+|
T Consensus 45 ~dG~kllF~s~~dg~--~nly~lDL~t~~i~QLTdg~g~~---~---~g~~~s~~~~~~~Yv~~--~---~~l~~vdL~T 111 (386)
T PF14583_consen 45 DDGRKLLFASDFDGN--RNLYLLDLATGEITQLTDGPGDN---T---FGGFLSPDDRALYYVKN--G---RSLRRVDLDT 111 (386)
T ss_dssp TTS-EEEEEE-TTSS---EEEEEETTT-EEEE---SS-B----T---TT-EE-TTSSEEEEEET--T---TEEEEEETTT
T ss_pred CCCCEEEEEeccCCC--cceEEEEcccCEEEECccCCCCC---c---cceEEecCCCeEEEEEC--C---CeEEEEECCc
Confidence 357777776654433 44899998888888888853211 0 14578999999999862 2 3789999999
Q ss_pred Cceec--ccccceeeeeEEEEe--CCcEEEEEEecCCCCC--CCCCC-CCcccCCcccEEEEEECCCCCCCCeEEEecCC
Q 004766 168 QIVEA--DALSWFKFSSIAWTH--DSKGFFYSRYPAPKEG--KDMDA-GTETDSNLYHEFYYHFLGTKQSEDILCWKDPE 240 (732)
Q Consensus 168 g~~~~--~~~~~~~~~~~~Wsp--Dg~~l~y~~~~~~~~~--~~~~~-~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~ 240 (732)
++... +..+.. .....|+. |++.++.+.....+.. .++.. .......-.++|+..++.+++. ..|+++..
T Consensus 112 ~e~~~vy~~p~~~-~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~--~~v~~~~~ 188 (386)
T PF14583_consen 112 LEERVVYEVPDDW-KGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGER--KVVFEDTD 188 (386)
T ss_dssp --EEEEEE--TTE-EEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--E--EEEEEESS
T ss_pred CcEEEEEECCccc-ccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCce--eEEEecCc
Confidence 87422 111211 23467753 5677666653221100 00000 0001133456899999998754 47776643
Q ss_pred CCeeEEEeEEec-CCcEEEEEEecCCcc-eEEEEEEeCCCCCCCcccccccCCCCCcEEeeecccceEEEEEecCCeEEE
Q 004766 241 HPKYIFSGHVTE-DGQYLVMCIEENCDP-VNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTF 318 (732)
Q Consensus 241 ~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~-~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~ 318 (732)
|...+.+|| |...|+|+-...... ..++|+++.++.. ..++.+...+.......|++||..++|
T Consensus 189 ---wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~-----------~~~v~~~~~~e~~gHEfw~~DG~~i~y 254 (386)
T PF14583_consen 189 ---WLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSN-----------VKKVHRRMEGESVGHEFWVPDGSTIWY 254 (386)
T ss_dssp ----EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS--------------EESS---TTEEEEEEEE-TTSS-EEE
T ss_pred ---cccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCc-----------ceeeecCCCCcccccccccCCCCEEEE
Confidence 677888898 556667765433332 4589999987742 111222222333345689999999988
Q ss_pred EeC-CCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecCCEEEEEEecCC--------------eeEEEEEeCCCC
Q 004766 319 LTN-KDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDV--------------KYVLQIRDLKNG 383 (732)
Q Consensus 319 ~s~-~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~~l~~~~~~~g--------------~~~l~~~d~~~g 383 (732)
.+- .++..+-|+.+|+++++ .+.+.+ .+ ...-+..+.|+.|++--..+. .+-|+++++..+
T Consensus 255 ~~~~~~~~~~~i~~~d~~t~~-~~~~~~-~p--~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~ 330 (386)
T PF14583_consen 255 DSYTPGGQDFWIAGYDPDTGE-RRRLME-MP--WCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAG 330 (386)
T ss_dssp EEEETTT--EEEEEE-TTT---EEEEEE-E---SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTT
T ss_pred EeecCCCCceEEEeeCCCCCC-ceEEEe-CC--ceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccC
Confidence 654 44556679999999886 233322 21 123344445555654333221 246788888755
Q ss_pred ceeeecccccc---------e--eeEeecccCCcEEEEEEecCCCCceEEEEECC
Q 004766 384 SLLHQLPIEIG---------S--VNAISARREDSVVFISFTSFLIPGIVYQCNLK 427 (732)
Q Consensus 384 ~~~~~l~~~~g---------~--v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~ 427 (732)
.. ..|..... . --.++++||++.++|. |++.-++.||..++.
T Consensus 331 ~~-~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~-Sd~~G~~~vY~v~i~ 383 (386)
T PF14583_consen 331 RF-RKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFR-SDMEGPPAVYLVEIP 383 (386)
T ss_dssp EE-EEEEE-------BTTBSSTT----EE-TTSSEEEEE-E-TTSS-EEEEEE--
T ss_pred ce-eeeeeccCcceeecCCCccCCCCCccCCCCCEEEEE-CCCCCCccEEEEeCc
Confidence 53 33322110 1 1135678999988765 566788899988764
|
|
| >KOG4627 consensus Kynurenine formamidase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.3e-10 Score=105.23 Aligned_cols=222 Identities=13% Similarity=0.121 Sum_probs=144.6
Q ss_pred eEEEEEEEccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhH
Q 004766 450 HVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEW 529 (732)
Q Consensus 450 ~~~~~~~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~ 529 (732)
.++.+.|- ..| +--+-|+.|. ...|++|++||||+...+..-.-....-+..+||.|+.++|--+..
T Consensus 44 r~e~l~Yg-~~g--~q~VDIwg~~-----~~~klfIfIHGGYW~~g~rk~clsiv~~a~~~gY~vasvgY~l~~q----- 110 (270)
T KOG4627|consen 44 RVEHLRYG-EGG--RQLVDIWGST-----NQAKLFIFIHGGYWQEGDRKMCLSIVGPAVRRGYRVASVGYNLCPQ----- 110 (270)
T ss_pred chhccccC-CCC--ceEEEEecCC-----CCccEEEEEecchhhcCchhcccchhhhhhhcCeEEEEeccCcCcc-----
Confidence 34445443 233 2234445553 4679999999999876655544333333444999999998754321
Q ss_pred HhcccccCCccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhh-CCCeeeEEEEcCCcccccccccCCCCC
Q 004766 530 HKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQ-RPDLFGCALAHVGVMDMLRYHKFTIGH 608 (732)
Q Consensus 530 ~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~-~p~~f~a~v~~~p~~d~~~~~~~~~~~ 608 (732)
...-..++.|+...++|+.+. +-..++|.+.|||+|+.|++.++.+ +.-++.+++..+|+.++......+.+
T Consensus 111 -----~htL~qt~~~~~~gv~filk~-~~n~k~l~~gGHSaGAHLa~qav~R~r~prI~gl~l~~GvY~l~EL~~te~g- 183 (270)
T KOG4627|consen 111 -----VHTLEQTMTQFTHGVNFILKY-TENTKVLTFGGHSAGAHLAAQAVMRQRSPRIWGLILLCGVYDLRELSNTESG- 183 (270)
T ss_pred -----cccHHHHHHHHHHHHHHHHHh-cccceeEEEcccchHHHHHHHHHHHhcCchHHHHHHHhhHhhHHHHhCCccc-
Confidence 112235688999999998875 2345789999999999999987764 55588999999999988665443222
Q ss_pred ccccccCCCCCHHHHHHHHhcCccc-CCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhcCCCCCCC
Q 004766 609 AWVSDFGCSEEEEEFYWLIKYSPLH-NVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSP 687 (732)
Q Consensus 609 ~~~~~~g~p~~~~~~~~~~~~sp~~-~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~ 687 (732)
...|..++. .+..||.. ..+. ++-|+||+.+.+|.---++|.+.|+++++++
T Consensus 184 ---~dlgLt~~~-----ae~~Scdl~~~~~----------v~~~ilVv~~~~espklieQnrdf~~q~~~a--------- 236 (270)
T KOG4627|consen 184 ---NDLGLTERN-----AESVSCDLWEYTD----------VTVWILVVAAEHESPKLIEQNRDFADQLRKA--------- 236 (270)
T ss_pred ---cccCcccch-----hhhcCccHHHhcC----------ceeeeeEeeecccCcHHHHhhhhHHHHhhhc---------
Confidence 112222211 12334432 2222 5678999999999988899999999999865
Q ss_pred CCCCEEEEEeCCCCCCCCCchHHHHHHHHHHHHHHHHH
Q 004766 688 QTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKM 725 (732)
Q Consensus 688 ~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~ 725 (732)
.+..|++.+|.---.. .+.....+..|+.+.
T Consensus 237 -----~~~~f~n~~hy~I~~~--~~~~~s~~~~~~~~~ 267 (270)
T KOG4627|consen 237 -----SFTLFKNYDHYDIIEE--TAIDDSDVSRFLRNI 267 (270)
T ss_pred -----ceeecCCcchhhHHHH--hccccchHHHHHHHH
Confidence 6778999999632111 122334455566554
|
|
| >cd00312 Esterase_lipase Esterases and lipases (includes fungal lipases, cholinesterases, etc | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.2e-10 Score=130.11 Aligned_cols=225 Identities=17% Similarity=0.124 Sum_probs=131.7
Q ss_pred eEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcC-cEEEEEccc-CCCCCchhHHhcccccCCccH
Q 004766 464 KIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLG-AVFCIANIR-GGGEYGEEWHKGGALAKKQNC 541 (732)
Q Consensus 464 ~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G-~~v~~~~~r-G~g~~g~~~~~~~~~~~~~~~ 541 (732)
-+.+.++.|......++.|+||++|||.......... ....++.+.+ ++|+.+||| |..+|...... ...+-..
T Consensus 78 cl~l~i~~p~~~~~~~~~pv~v~ihGG~~~~g~~~~~-~~~~~~~~~~~~~vv~~~yRlg~~g~~~~~~~---~~~~n~g 153 (493)
T cd00312 78 CLYLNVYTPKNTKPGNSLPVMVWIHGGGFMFGSGSLY-PGDGLAREGDNVIVVSINYRLGVLGFLSTGDI---ELPGNYG 153 (493)
T ss_pred CCeEEEEeCCCCCCCCCCCEEEEEcCCccccCCCCCC-ChHHHHhcCCCEEEEEecccccccccccCCCC---CCCcchh
Confidence 3667778887643356789999999995443333322 2234444344 999999999 66565432211 1222345
Q ss_pred HHHHHHHHHHHHHc---CCCCCCcEEEEecChhHHHHHHHHhh--CCCeeeEEEEcCCcccccccccCCCC---Cccccc
Q 004766 542 FDDFISASEYLISA---GYTQSRKLCIEGGSNGGLLVGACINQ--RPDLFGCALAHVGVMDMLRYHKFTIG---HAWVSD 613 (732)
Q Consensus 542 ~~D~~~~~~~l~~~---~~~d~~~i~i~G~S~GG~l~~~~~~~--~p~~f~a~v~~~p~~d~~~~~~~~~~---~~~~~~ 613 (732)
+.|+++|++|+.++ --.||+||.|+|+|+||.++..++.. .+.+|+++|+.+|............. ......
T Consensus 154 ~~D~~~al~wv~~~i~~fggd~~~v~~~G~SaG~~~~~~~~~~~~~~~lf~~~i~~sg~~~~~~~~~~~~~~~~~~~~~~ 233 (493)
T cd00312 154 LKDQRLALKWVQDNIAAFGGDPDSVTIFGESAGGASVSLLLLSPDSKGLFHRAISQSGSALSPWAIQENARGRAKRLARL 233 (493)
T ss_pred HHHHHHHHHHHHHHHHHhCCCcceEEEEeecHHHHHhhhHhhCcchhHHHHHHhhhcCCccCcccccccHHHHHHHHHHH
Confidence 89999999999876 23699999999999999999988886 34589999999886653221110000 012234
Q ss_pred cCCCC--CHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhcCCCCCCCCCCC
Q 004766 614 FGCSE--EEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNP 691 (732)
Q Consensus 614 ~g~p~--~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 691 (732)
.|+.. ..+..+.|++.++-..++.... +.. ....+.+...-.-|..+-+.++.++.+.=+. .++|
T Consensus 234 lgc~~~~~~~~l~cLr~~~~~~l~~a~~~-~~~--~~~~~~~~f~PvvDg~~lp~~p~~~~~~g~~----------~~vP 300 (493)
T cd00312 234 LGCNDTSSAELLDCLRSKSAEELLDATRK-LLL--FSYSPFLPFGPVVDGDFIPDDPEELIKEGKF----------AKVP 300 (493)
T ss_pred cCCCCCCHHHHHHHHhcCCHHHHHHHHHh-hcc--ccccCccceeeecCCCCCCcCHHHHHhcCCC----------CCCC
Confidence 56642 2345566777665432221000 000 0001111112223444555666555433211 2789
Q ss_pred EEEEEeCCCCCCCC
Q 004766 692 IIGRIERKAGHGVG 705 (732)
Q Consensus 692 ~~~~~~~~~gH~~~ 705 (732)
+.+-...++|..+.
T Consensus 301 vLiG~t~dEg~~f~ 314 (493)
T cd00312 301 LIIGVTKDEGGYFA 314 (493)
T ss_pred EEEEEeccchhhhH
Confidence 99888888887543
|
) These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These catalytic residues are responsible for the nucleophilic attack on the carbonyl carbon atom of the ester bond. In contrast with other alpha/beta hydrolase fold family members, p-nitrobenzyl esterase and acetylcholine esterase have a Glu instead of Asp at the active site carboxylate. |
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.12 E-value=8.9e-09 Score=102.51 Aligned_cols=248 Identities=18% Similarity=0.123 Sum_probs=142.3
Q ss_pred EEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceeccccc--ceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCc
Q 004766 134 LIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALS--WFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTE 211 (732)
Q Consensus 134 ~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~ 211 (732)
+-.++||++|++||-++... ..-||...-++.-.+..+.. ...+.-+.||||+++|+-+..++
T Consensus 227 VWfl~FS~nGkyLAsaSkD~---Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e------------ 291 (519)
T KOG0293|consen 227 VWFLQFSHNGKYLASASKDS---TAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDE------------ 291 (519)
T ss_pred EEEEEEcCCCeeEeeccCCc---eEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchH------------
Confidence 55788999999999664321 12344433333322222211 11246789999999998764332
Q ss_pred ccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCC
Q 004766 212 TDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDG 291 (732)
Q Consensus 212 ~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 291 (732)
.+++|++.|+... ..|.... ..-..+.+|-|||..++..+.+ ..++.+|+++..
T Consensus 292 -------~~~lwDv~tgd~~--~~y~~~~-~~S~~sc~W~pDg~~~V~Gs~d-----r~i~~wdlDgn~----------- 345 (519)
T KOG0293|consen 292 -------VLSLWDVDTGDLR--HLYPSGL-GFSVSSCAWCPDGFRFVTGSPD-----RTIIMWDLDGNI----------- 345 (519)
T ss_pred -------heeeccCCcchhh--hhcccCc-CCCcceeEEccCCceeEecCCC-----CcEEEecCCcch-----------
Confidence 3889999887543 3443321 1224578999999997655433 448889988732
Q ss_pred CCCcEEeeecccceEE-EEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecCCEEEEEEecC
Q 004766 292 LLPFVKLIDGFDAQYE-VIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSD 370 (732)
Q Consensus 292 ~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~~l~~~~~~~ 370 (732)
...|+-..... .+. ..++||+.++.++.+ .++..++.++..+ +.++.+. ..+.++.+++++++++....+
T Consensus 346 ~~~W~gvr~~~--v~dlait~Dgk~vl~v~~d----~~i~l~~~e~~~d-r~lise~--~~its~~iS~d~k~~LvnL~~ 416 (519)
T KOG0293|consen 346 LGNWEGVRDPK--VHDLAITYDGKYVLLVTVD----KKIRLYNREARVD-RGLISEE--QPITSFSISKDGKLALVNLQD 416 (519)
T ss_pred hhcccccccce--eEEEEEcCCCcEEEEEecc----cceeeechhhhhh-hcccccc--CceeEEEEcCCCcEEEEEccc
Confidence 12233222111 111 367899998877643 2466666665542 2245443 678999999888877776666
Q ss_pred CeeEEEEEeCCCCceeeecccc-cceeeEeecccC-CcEEEEEEecCCCCceEEEEECCCCCCceEEEE
Q 004766 371 VKYVLQIRDLKNGSLLHQLPIE-IGSVNAISARRE-DSVVFISFTSFLIPGIVYQCNLKTETPEMKIFR 437 (732)
Q Consensus 371 g~~~l~~~d~~~g~~~~~l~~~-~g~v~~~~~s~d-~~~l~~~~ss~~~p~~~y~~d~~~~~~~~~~l~ 437 (732)
..+.+||++..+.+++.... .+.. -+..-+. ++.-++. |-..-..+|.++..+|+. +..|.
T Consensus 417 --qei~LWDl~e~~lv~kY~Ghkq~~f-iIrSCFgg~~~~fia--SGSED~kvyIWhr~sgkl-l~~Ls 479 (519)
T KOG0293|consen 417 --QEIHLWDLEENKLVRKYFGHKQGHF-IIRSCFGGGNDKFIA--SGSEDSKVYIWHRISGKL-LAVLS 479 (519)
T ss_pred --CeeEEeecchhhHHHHhhcccccce-EEEeccCCCCcceEE--ecCCCceEEEEEccCCce-eEeec
Confidence 57899999744333333222 1111 1111122 2222222 223457899999988862 44443
|
|
| >PF12740 Chlorophyllase2: Chlorophyllase enzyme; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3 | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.3e-09 Score=103.39 Aligned_cols=118 Identities=16% Similarity=0.169 Sum_probs=88.5
Q ss_pred eEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCccHHH
Q 004766 464 KIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFD 543 (732)
Q Consensus 464 ~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~ 543 (732)
..|..+++|+. .+.+|+||+.||.. . .+.+-......+++.||+|+.++...-. ........+
T Consensus 3 p~~l~v~~P~~---~g~yPVv~f~~G~~-~--~~s~Ys~ll~hvAShGyIVV~~d~~~~~-----------~~~~~~~~~ 65 (259)
T PF12740_consen 3 PKPLLVYYPSS---AGTYPVVLFLHGFL-L--INSWYSQLLEHVASHGYIVVAPDLYSIG-----------GPDDTDEVA 65 (259)
T ss_pred CCCeEEEecCC---CCCcCEEEEeCCcC-C--CHHHHHHHHHHHHhCceEEEEecccccC-----------CCCcchhHH
Confidence 34678889987 48899999999976 2 3344334556677799999999954421 122334578
Q ss_pred HHHHHHHHHHHc---C-----CCCCCcEEEEecChhHHHHHHHHhhC-----CCeeeEEEEcCCcccc
Q 004766 544 DFISASEYLISA---G-----YTQSRKLCIEGGSNGGLLVGACINQR-----PDLFGCALAHVGVMDM 598 (732)
Q Consensus 544 D~~~~~~~l~~~---~-----~~d~~~i~i~G~S~GG~l~~~~~~~~-----p~~f~a~v~~~p~~d~ 598 (732)
++.+.++||.+. . ..|-+||+|+|||.||-++..++.++ +.+|+|+|+..|+-.+
T Consensus 66 ~~~~vi~Wl~~~L~~~l~~~v~~D~s~l~l~GHSrGGk~Af~~al~~~~~~~~~~~~ali~lDPVdG~ 133 (259)
T PF12740_consen 66 SAAEVIDWLAKGLESKLPLGVKPDFSKLALAGHSRGGKVAFAMALGNASSSLDLRFSALILLDPVDGM 133 (259)
T ss_pred HHHHHHHHHHhcchhhccccccccccceEEeeeCCCCHHHHHHHhhhcccccccceeEEEEecccccc
Confidence 888899998762 1 24778999999999999999888886 5589999999997643
|
1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process |
| >PRK11126 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.6e-09 Score=108.82 Aligned_cols=99 Identities=13% Similarity=0.035 Sum_probs=69.7
Q ss_pred ccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCccHHHHHHHHHHHHHHcCCCCC
Q 004766 481 HPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQS 560 (732)
Q Consensus 481 ~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~ 560 (732)
.|.||++||..++.. .|.... ..| ++|.|+++|+||.|..... ....++++.+.+..+++.- ..
T Consensus 2 ~p~vvllHG~~~~~~--~w~~~~-~~l--~~~~vi~~D~~G~G~S~~~---------~~~~~~~~~~~l~~~l~~~--~~ 65 (242)
T PRK11126 2 LPWLVFLHGLLGSGQ--DWQPVG-EAL--PDYPRLYIDLPGHGGSAAI---------SVDGFADVSRLLSQTLQSY--NI 65 (242)
T ss_pred CCEEEEECCCCCChH--HHHHHH-HHc--CCCCEEEecCCCCCCCCCc---------cccCHHHHHHHHHHHHHHc--CC
Confidence 378999999877643 454433 344 3699999999998865321 1124555555555555442 34
Q ss_pred CcEEEEecChhHHHHHHHHhhCCC-eeeEEEEcCCc
Q 004766 561 RKLCIEGGSNGGLLVGACINQRPD-LFGCALAHVGV 595 (732)
Q Consensus 561 ~~i~i~G~S~GG~l~~~~~~~~p~-~f~a~v~~~p~ 595 (732)
+++.++|+|+||.+++.++.++|+ +++++|+..+.
T Consensus 66 ~~~~lvG~S~Gg~va~~~a~~~~~~~v~~lvl~~~~ 101 (242)
T PRK11126 66 LPYWLVGYSLGGRIAMYYACQGLAGGLCGLIVEGGN 101 (242)
T ss_pred CCeEEEEECHHHHHHHHHHHhCCcccccEEEEeCCC
Confidence 689999999999999999999865 48888876544
|
|
| >PLN02211 methyl indole-3-acetate methyltransferase | Back alignment and domain information |
|---|
Probab=99.10 E-value=5.1e-09 Score=106.87 Aligned_cols=107 Identities=20% Similarity=0.191 Sum_probs=75.6
Q ss_pred CCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCccHHHHHHHHHHHHHHcCC
Q 004766 478 DGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGY 557 (732)
Q Consensus 478 ~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~ 557 (732)
.+..|.||++||..+.. ..|.. ....|.++||.|+++|+||.|.... ......+++++.+.+..+++.-
T Consensus 15 ~~~~p~vvliHG~~~~~--~~w~~-~~~~L~~~g~~vi~~dl~g~G~s~~-------~~~~~~~~~~~~~~l~~~i~~l- 83 (273)
T PLN02211 15 NRQPPHFVLIHGISGGS--WCWYK-IRCLMENSGYKVTCIDLKSAGIDQS-------DADSVTTFDEYNKPLIDFLSSL- 83 (273)
T ss_pred cCCCCeEEEECCCCCCc--CcHHH-HHHHHHhCCCEEEEecccCCCCCCC-------CcccCCCHHHHHHHHHHHHHhc-
Confidence 35678999999987653 34543 3455665899999999999874211 0112245666665555554431
Q ss_pred CCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCc
Q 004766 558 TQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGV 595 (732)
Q Consensus 558 ~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~ 595 (732)
...+++.++||||||+++..++.++|++++++|...+.
T Consensus 84 ~~~~~v~lvGhS~GG~v~~~~a~~~p~~v~~lv~~~~~ 121 (273)
T PLN02211 84 PENEKVILVGHSAGGLSVTQAIHRFPKKICLAVYVAAT 121 (273)
T ss_pred CCCCCEEEEEECchHHHHHHHHHhChhheeEEEEeccc
Confidence 12368999999999999999999999999999887664
|
|
| >COG2272 PnbA Carboxylesterase type B [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.2e-10 Score=119.22 Aligned_cols=214 Identities=18% Similarity=0.173 Sum_probs=133.4
Q ss_pred EEEEEEEcCCCCCCCCccEEEEEcCC---CCccCCCCcChhHHHHHHhcC-cEEEEEcccCCCCCch-hHHhcc--cccC
Q 004766 465 IPMFIVSKKNIKLDGSHPCLLYGYGG---FNISVTPSFSVSRTILMRHLG-AVFCIANIRGGGEYGE-EWHKGG--ALAK 537 (732)
Q Consensus 465 i~~~~~~p~~~~~~~~~P~vv~~hG~---~~~~~~~~~~~~~~~~l~~~G-~~v~~~~~rG~g~~g~-~~~~~~--~~~~ 537 (732)
+..-|+.|. ....+.|+|||+||| .|+...+.|.+. .|+++| ++|+.+|||-|- +|- ++.... ....
T Consensus 80 L~LNIwaP~--~~a~~~PVmV~IHGG~y~~Gs~s~~~ydgs---~La~~g~vVvVSvNYRLG~-lGfL~~~~~~~~~~~~ 153 (491)
T COG2272 80 LYLNIWAPE--VPAEKLPVMVYIHGGGYIMGSGSEPLYDGS---ALAARGDVVVVSVNYRLGA-LGFLDLSSLDTEDAFA 153 (491)
T ss_pred eeEEeeccC--CCCCCCcEEEEEeccccccCCCcccccChH---HHHhcCCEEEEEeCccccc-ceeeehhhcccccccc
Confidence 556667787 234678999999999 356666777764 345577 999999999653 221 222221 1111
Q ss_pred CccHHHHHHHHHHHHHHc---CCCCCCcEEEEecChhHHHHHHHHhhCCC---eeeEEEEcCCcccccccccC--CCCCc
Q 004766 538 KQNCFDDFISASEYLISA---GYTQSRKLCIEGGSNGGLLVGACINQRPD---LFGCALAHVGVMDMLRYHKF--TIGHA 609 (732)
Q Consensus 538 ~~~~~~D~~~~~~~l~~~---~~~d~~~i~i~G~S~GG~l~~~~~~~~p~---~f~a~v~~~p~~d~~~~~~~--~~~~~ 609 (732)
.-..+.|++.|++|+.++ ---||++|.|+|.|+|++.++.++.. |. +|+-+|+.+|-.-....... .....
T Consensus 154 ~n~Gl~DqilALkWV~~NIe~FGGDp~NVTl~GeSAGa~si~~Lla~-P~AkGLF~rAi~~Sg~~~~~~s~~~A~~~a~~ 232 (491)
T COG2272 154 SNLGLLDQILALKWVRDNIEAFGGDPQNVTLFGESAGAASILTLLAV-PSAKGLFHRAIALSGAASRVTSREEAREKAAA 232 (491)
T ss_pred ccccHHHHHHHHHHHHHHHHHhCCCccceEEeeccchHHHHHHhhcC-ccchHHHHHHHHhCCCCCccCcHHHHHHHHHH
Confidence 124689999999999876 33699999999999999999988885 65 78888888886642221110 00112
Q ss_pred cccccCCCCCHHHHHHHHhcCcccCCCCCCCCCCC---CCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhcCCCCCC
Q 004766 610 WVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPD---KPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENS 686 (732)
Q Consensus 610 ~~~~~g~p~~~~~~~~~~~~sp~~~~~~~~~~~~~---~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~ 686 (732)
+...+|.+ .+..+.++..++-..++... .+.. ....++|+ -|+.+-+.++..+.+.-+..
T Consensus 233 f~~~lG~~--~~~~~~L~~~~~~~L~~~~~-~~~~~~~~~~~~~p~------~~d~~lp~~P~e~~~~g~~~-------- 295 (491)
T COG2272 233 FARALGIP--EATLDKLRALSAEDLVKARL-PLIGRTFGAVPYGPV------LGDSLLPRDPLEAIAQGRSH-------- 295 (491)
T ss_pred HHHHhCCC--HHHHHHHhcCCHHHHHhhhh-hhccccCCCcCCCCc------cCcccccCChhhhhhccccc--------
Confidence 23456776 44555566665543332200 0000 00113343 24446666777777776655
Q ss_pred CCCCCEEEEEeCCCCCCC
Q 004766 687 PQTNPIIGRIERKAGHGV 704 (732)
Q Consensus 687 ~~~~~~~~~~~~~~gH~~ 704 (732)
++|+.+-+.-++|-.+
T Consensus 296 --~vpl~iGtn~dEg~~f 311 (491)
T COG2272 296 --GVPLMIGTNHDEGSLF 311 (491)
T ss_pred --CCcEEeeccCCcceEE
Confidence 7888887777777665
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.2e-08 Score=109.79 Aligned_cols=231 Identities=17% Similarity=0.118 Sum_probs=143.7
Q ss_pred CCCEEEEeEEECCCCcEEEEEEeccCCceEEEEEEEC-CCCceecc-cccceeeeeEEEEeCCcEEEEEEecCCCCCCCC
Q 004766 129 DGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRI-EDQIVEAD-ALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDM 206 (732)
Q Consensus 129 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl-~~g~~~~~-~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~ 206 (732)
++...+..+.|||||++|+ .+++..+|+|||+ ..+..+.. .........++|+|+|+.|+..+.++
T Consensus 201 ~h~~~v~~~~fs~d~~~l~-----s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~------- 268 (456)
T KOG0266|consen 201 GHTRGVSDVAFSPDGSYLL-----SGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDG------- 268 (456)
T ss_pred ccccceeeeEECCCCcEEE-----EecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCC-------
Confidence 3456788999999999776 3455589999999 44454321 11222348899999997666655433
Q ss_pred CCCCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccc
Q 004766 207 DAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGF 286 (732)
Q Consensus 207 ~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~ 286 (732)
.|++|++.++... ..+.. +...+..+++++||++|+..+. ...+.++|+.++..
T Consensus 269 ------------tvriWd~~~~~~~--~~l~~--hs~~is~~~f~~d~~~l~s~s~-----d~~i~vwd~~~~~~----- 322 (456)
T KOG0266|consen 269 ------------TVRIWDVRTGECV--RKLKG--HSDGISGLAFSPDGNLLVSASY-----DGTIRVWDLETGSK----- 322 (456)
T ss_pred ------------cEEEEeccCCeEE--Eeeec--cCCceEEEEECCCCCEEEEcCC-----CccEEEEECCCCce-----
Confidence 5899999885322 23322 3345678999999999976643 24588889887530
Q ss_pred cccCCCCCcEEeeecccc---eEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCC-CceeEEEEecCCE
Q 004766 287 KKRDGLLPFVKLIDGFDA---QYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAER-DVLESATAVNLNQ 362 (732)
Q Consensus 287 ~~~~~~~~~~~l~~~~~~---~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~-~~l~~~~~~~~~~ 362 (732)
.....+...... ....|+|+|+.++..+. +..|..+|+..+........+... .-+..+..+.++.
T Consensus 323 ------~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~----d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (456)
T KOG0266|consen 323 ------LCLKLLSGAENSAPVTSVQFSPNGKYLLSASL----DRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGK 392 (456)
T ss_pred ------eeeecccCCCCCCceeEEEECCCCcEEEEecC----CCeEEEEEccCCcceeeecccCCcceeEecccccCCCC
Confidence 001112211111 22348899988776443 345777888776544555555432 1222333344467
Q ss_pred EEEEEecCCeeEEEEEeCCCCceeeecccc-cceeeEeecccCCcEEE
Q 004766 363 MIVSYLSDVKYVLQIRDLKNGSLLHQLPIE-IGSVNAISARREDSVVF 409 (732)
Q Consensus 363 l~~~~~~~g~~~l~~~d~~~g~~~~~l~~~-~g~v~~~~~s~d~~~l~ 409 (732)
+++....+ ..|++|++.++..+..+... ...+..++.++..+.+.
T Consensus 393 ~i~sg~~d--~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~ 438 (456)
T KOG0266|consen 393 LIYSGSED--GSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIA 438 (456)
T ss_pred eEEEEeCC--ceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeee
Confidence 77777777 47899999877766666655 55555666666666443
|
|
| >PLN03084 alpha/beta hydrolase fold protein; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=4.1e-09 Score=111.74 Aligned_cols=122 Identities=15% Similarity=-0.007 Sum_probs=82.7
Q ss_pred ccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccC
Q 004766 458 SKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAK 537 (732)
Q Consensus 458 s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~ 537 (732)
+.+| .++.+.. .+ ++..|.||++||.+.... .|.. ....|+ .+|.|+++|.||.|....... ...
T Consensus 111 ~~~~-~~~~y~~---~G---~~~~~~ivllHG~~~~~~--~w~~-~~~~L~-~~~~Via~DlpG~G~S~~p~~----~~~ 175 (383)
T PLN03084 111 SSDL-FRWFCVE---SG---SNNNPPVLLIHGFPSQAY--SYRK-VLPVLS-KNYHAIAFDWLGFGFSDKPQP----GYG 175 (383)
T ss_pred cCCc-eEEEEEe---cC---CCCCCeEEEECCCCCCHH--HHHH-HHHHHh-cCCEEEEECCCCCCCCCCCcc----ccc
Confidence 3577 6665332 22 124589999999866532 4443 345677 689999999999875422110 001
Q ss_pred CccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCcc
Q 004766 538 KQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVM 596 (732)
Q Consensus 538 ~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~ 596 (732)
...+++++...+..+++.- ..+++.++|+|+||+++..++.++|++++++|+..|..
T Consensus 176 ~~ys~~~~a~~l~~~i~~l--~~~~~~LvG~s~GG~ia~~~a~~~P~~v~~lILi~~~~ 232 (383)
T PLN03084 176 FNYTLDEYVSSLESLIDEL--KSDKVSLVVQGYFSPPVVKYASAHPDKIKKLILLNPPL 232 (383)
T ss_pred ccCCHHHHHHHHHHHHHHh--CCCCceEEEECHHHHHHHHHHHhChHhhcEEEEECCCC
Confidence 1235666666666655542 23589999999999999999999999999999887753
|
|
| >KOG1454 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.03 E-value=3.6e-09 Score=109.64 Aligned_cols=212 Identities=14% Similarity=0.070 Sum_probs=126.1
Q ss_pred CCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCccHHHHHHHHHHHHHHcCCC
Q 004766 479 GSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYT 558 (732)
Q Consensus 479 ~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~ 558 (732)
...|.||++||...+ ...|......+..+.|+.|.++|..|.|-. .+.. .....+..+....+..+...-..
T Consensus 56 ~~~~pvlllHGF~~~--~~~w~~~~~~L~~~~~~~v~aiDl~G~g~~--s~~~----~~~~y~~~~~v~~i~~~~~~~~~ 127 (326)
T KOG1454|consen 56 KDKPPVLLLHGFGAS--SFSWRRVVPLLSKAKGLRVLAIDLPGHGYS--SPLP----RGPLYTLRELVELIRRFVKEVFV 127 (326)
T ss_pred CCCCcEEEeccccCC--cccHhhhccccccccceEEEEEecCCCCcC--CCCC----CCCceehhHHHHHHHHHHHhhcC
Confidence 467899999996553 345554433333434799999999995521 1111 11224566777776665554333
Q ss_pred CCCcEEEEecChhHHHHHHHHhhCCCeeeEEE---EcCCcccccccc--------c-------------CCCC-Cccccc
Q 004766 559 QSRKLCIEGGSNGGLLVGACINQRPDLFGCAL---AHVGVMDMLRYH--------K-------------FTIG-HAWVSD 613 (732)
Q Consensus 559 d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v---~~~p~~d~~~~~--------~-------------~~~~-~~~~~~ 613 (732)
+++.++|+|+||+++..+|..+|+..+.+| ...|........ . .... ..|...
T Consensus 128 --~~~~lvghS~Gg~va~~~Aa~~P~~V~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 205 (326)
T KOG1454|consen 128 --EPVSLVGHSLGGIVALKAAAYYPETVDSLVLLDLLGPPVYSTPKGIKGLRRLLDKFLSALELLIPLSLTEPVRLVSEG 205 (326)
T ss_pred --cceEEEEeCcHHHHHHHHHHhCcccccceeeecccccccccCCcchhHHHHhhhhhccHhhhcCccccccchhheeHh
Confidence 349999999999999999999999999998 443332211000 0 0000 001100
Q ss_pred --------cCCC-CCHHHHHHHHh-----------------------cCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCC
Q 004766 614 --------FGCS-EEEEEFYWLIK-----------------------YSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDD 661 (732)
Q Consensus 614 --------~g~p-~~~~~~~~~~~-----------------------~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~ 661 (732)
+.++ .+.+....+.. ..+...+++ ..+.|+||++|+.|.
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------i~~~pvlii~G~~D~ 276 (326)
T KOG1454|consen 206 LLRCLKVVYTDPSRLLEKLLHLLSRPVKEHFHRDARLSLFLELLGFDENLLSLIKK---------IWKCPVLIIWGDKDQ 276 (326)
T ss_pred hhcceeeeccccccchhhhhhheecccccchhhhheeeEEEeccCccchHHHhhcc---------ccCCceEEEEcCcCC
Confidence 0111 01111100100 011122233 134999999999999
Q ss_pred CCCchHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeCCCCCCCCCchHHHHHHHHHHHHHHHHH
Q 004766 662 RVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKM 725 (732)
Q Consensus 662 ~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~ 725 (732)
.+|.+.+..+.+++. .+++++.+++||....... .+..+.+..|+.++
T Consensus 277 ~~p~~~~~~~~~~~p--------------n~~~~~I~~~gH~~h~e~P--e~~~~~i~~Fi~~~ 324 (326)
T KOG1454|consen 277 IVPLELAEELKKKLP--------------NAELVEIPGAGHLPHLERP--EEVAALLRSFIARL 324 (326)
T ss_pred ccCHHHHHHHHhhCC--------------CceEEEeCCCCcccccCCH--HHHHHHHHHHHHHh
Confidence 999997777766652 2589999999998766443 35566778888765
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.6e-07 Score=93.90 Aligned_cols=275 Identities=12% Similarity=0.109 Sum_probs=158.1
Q ss_pred HhhcCC-CCCCCcEEeCCEEEEEEEcCCCCeeEEEEEeCCCCCceEEeCCCCcCCCCCEEEEeEE-ECCCCcEEEEEEec
Q 004766 75 TKLFDS-PRYDAPFKRGNKYFYFHNTGLQPQSVLYVQDSLDAKAKVLLDPNTLSDDGTAALIKVS-VSEDAKYLAYALSY 152 (732)
Q Consensus 75 ~~~~~~-~~~~~p~~~g~~~~~~~~~~~~~~~~l~~r~~~~~~~~~l~D~~~l~~~~~~~~~~~~-~SPDG~~la~~~~~ 152 (732)
+..+.. ..+|.|...|++.||...-.+-. .||..+. |.+.|.+...+.-..++ .+.||++|.|..
T Consensus 219 eK~vdl~~~vS~PmIV~~RvYFlsD~eG~G--nlYSvdl---------dGkDlrrHTnFtdYY~R~~nsDGkrIvFq~-- 285 (668)
T COG4946 219 EKFVDLDGNVSSPMIVGERVYFLSDHEGVG--NLYSVDL---------DGKDLRRHTNFTDYYPRNANSDGKRIVFQN-- 285 (668)
T ss_pred eeeeecCCCcCCceEEcceEEEEecccCcc--ceEEecc---------CCchhhhcCCchhccccccCCCCcEEEEec--
Confidence 334433 46888888888988887644433 3776543 33333221112222233 788999999984
Q ss_pred cCCceEEEEEEECCCCceeccccc--------ce------ee-eeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCCcc
Q 004766 153 SGSDWATIKLMRIEDQIVEADALS--------WF------KF-SSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLY 217 (732)
Q Consensus 153 ~G~e~~~i~v~dl~~g~~~~~~~~--------~~------~~-~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~~~ 217 (732)
+| .||++|.++.......+. .. ++ ..++-+ +|..|++++...
T Consensus 286 ~G----dIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~-~Gd~ia~VSRGk------------------ 342 (668)
T COG4946 286 AG----DIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVV-NGDYIALVSRGK------------------ 342 (668)
T ss_pred CC----cEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccC-CCcEEEEEecCc------------------
Confidence 33 699999887653211111 00 01 113333 677777775321
Q ss_pred cEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCCCCcEE
Q 004766 218 HEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVK 297 (732)
Q Consensus 218 ~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~ 297 (732)
.+..+...+. +.+.+. ++-+.-..++-|++-+++...+++ .+-+++..+++ .+.
T Consensus 343 --aFi~~~~~~~-----~iqv~~-~~~VrY~r~~~~~e~~vigt~dgD----~l~iyd~~~~e--------------~kr 396 (668)
T COG4946 343 --AFIMRPWDGY-----SIQVGK-KGGVRYRRIQVDPEGDVIGTNDGD----KLGIYDKDGGE--------------VKR 396 (668)
T ss_pred --EEEECCCCCe-----eEEcCC-CCceEEEEEccCCcceEEeccCCc----eEEEEecCCce--------------EEE
Confidence 2322221111 011111 111222345556665555544432 46677877753 223
Q ss_pred eeecccceEE-EEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecCCEEEEEEecCCe--eE
Q 004766 298 LIDGFDAQYE-VIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVK--YV 374 (732)
Q Consensus 298 l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~~l~~~~~~~g~--~~ 374 (732)
...+...... ..++||+.+++ +| .++.|+.+|++++. ..++...+...|.++.|+++.+.++..-..|. +.
T Consensus 397 ~e~~lg~I~av~vs~dGK~~vv-aN---dr~el~vididngn--v~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~ 470 (668)
T COG4946 397 IEKDLGNIEAVKVSPDGKKVVV-AN---DRFELWVIDIDNGN--VRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQS 470 (668)
T ss_pred eeCCccceEEEEEcCCCcEEEE-Ec---CceEEEEEEecCCC--eeEecccccceeEEEEEcCCceeEEEecCcceeeee
Confidence 3333322222 37888887664 44 36899999999997 55666666678999999997666666555654 68
Q ss_pred EEEEeCCCCceeeecccccceeeEeecccCCcEEEEEEecCCCC
Q 004766 375 LQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIP 418 (732)
Q Consensus 375 l~~~d~~~g~~~~~l~~~~g~v~~~~~s~d~~~l~~~~ss~~~p 418 (732)
|.++|.++|+. -.++.|.+.=.+.++++|++.|+|....-..|
T Consensus 471 Iklydm~~~Ki-y~vTT~ta~DfsPaFD~d~ryLYfLs~RsLdP 513 (668)
T COG4946 471 IKLYDMDGGKI-YDVTTPTAYDFSPAFDPDGRYLYFLSARSLDP 513 (668)
T ss_pred EEEEecCCCeE-EEecCCcccccCcccCCCCcEEEEEeccccCC
Confidence 99999986675 67776743333567888999888766554444
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=99.02 E-value=4.6e-07 Score=92.89 Aligned_cols=259 Identities=11% Similarity=0.109 Sum_probs=133.2
Q ss_pred EEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecccccc-eeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcc
Q 004766 134 LIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSW-FKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTET 212 (732)
Q Consensus 134 ~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~~~-~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~ 212 (732)
.....|.+||++|+|..+..|. .++|++||++++..+.+... ....+..+||+++.|+|....
T Consensus 38 F~~~~ft~dG~kllF~s~~dg~--~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~-------------- 101 (386)
T PF14583_consen 38 FYQNCFTDDGRKLLFASDFDGN--RNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNG-------------- 101 (386)
T ss_dssp TTS--B-TTS-EEEEEE-TTSS---EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETT--------------
T ss_pred ecCCCcCCCCCEEEEEeccCCC--cceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECC--------------
Confidence 3467799999999999998776 69999999999976654322 112467899999999998522
Q ss_pred cCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEE--ecCCcEEEEEEecCC-----------------cceEEEEE
Q 004766 213 DSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHV--TEDGQYLVMCIEENC-----------------DPVNKVYY 273 (732)
Q Consensus 213 ~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~--SpDg~~l~~~~~~~~-----------------~~~~~l~~ 273 (732)
..|+..++.|.+. .+||+.++. |.....| ..|++.++....... ....+|+.
T Consensus 102 -----~~l~~vdL~T~e~--~~vy~~p~~--~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~ 172 (386)
T PF14583_consen 102 -----RSLRRVDLDTLEE--RVVYEVPDD--WKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFT 172 (386)
T ss_dssp -----TEEEEEETTT--E--EEEEE--TT--EEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEE
T ss_pred -----CeEEEEECCcCcE--EEEEECCcc--cccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEE
Confidence 3689999998753 478887753 4433444 457888766543322 12478999
Q ss_pred EeCCCCCCCcccccccCCCCCcEEeee-cccceEEEEEecCCeEEEEeCCC---CCCceEEEEeCCCCCCceEeccCCCC
Q 004766 274 CDLSALPEGLEGFKKRDGLLPFVKLID-GFDAQYEVIANDDTVFTFLTNKD---APKYKIIRVDLKEPNDWFEVIPEAER 349 (732)
Q Consensus 274 ~d~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~s~dg~~l~~~s~~~---~~~~~l~~~d~~~~~~~~~l~~~~~~ 349 (732)
+|+.+|+ .+.+.. ..--....+||....++..+.++ .-..+|+.++.++.. .+.+..+.+.
T Consensus 173 idl~tG~--------------~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~-~~~v~~~~~~ 237 (386)
T PF14583_consen 173 IDLKTGE--------------RKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSN-VKKVHRRMEG 237 (386)
T ss_dssp EETTT----------------EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS----EESS---TT
T ss_pred EECCCCc--------------eeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCc-ceeeecCCCC
Confidence 9999864 333333 22223445788544555455443 224589999987765 4555554433
Q ss_pred CceeEEEEecC-CEEEE-EEecCCe-eEEEEEeCCCCceeeec-ccccceeeEeecccCCcEEEEEEec--CC-------
Q 004766 350 DVLESATAVNL-NQMIV-SYLSDVK-YVLQIRDLKNGSLLHQL-PIEIGSVNAISARREDSVVFISFTS--FL------- 416 (732)
Q Consensus 350 ~~l~~~~~~~~-~~l~~-~~~~~g~-~~l~~~d~~~g~~~~~l-~~~~g~v~~~~~s~d~~~l~~~~ss--~~------- 416 (732)
..+.-=.|.++ ..+++ .....+. ..|..+++++++. +.+ ..|. .+ .+..++|++.+ +.=.+ +.
T Consensus 238 e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~-~~~~~~p~-~~-H~~ss~Dg~L~-vGDG~d~p~~v~~~~~ 313 (386)
T PF14583_consen 238 ESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGER-RRLMEMPW-CS-HFMSSPDGKLF-VGDGGDAPVDVADAGG 313 (386)
T ss_dssp EEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--E-EEEEEE-S-EE-EEEE-TTSSEE-EEEE------------
T ss_pred cccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCc-eEEEeCCc-ee-eeEEcCCCCEE-EecCCCCCcccccccc
Confidence 33333345554 45554 4445543 3678888988876 333 2332 22 44556777633 22222 11
Q ss_pred ----CCceEEEEECCCCCCceEEEEe
Q 004766 417 ----IPGIVYQCNLKTETPEMKIFRE 438 (732)
Q Consensus 417 ----~p~~~y~~d~~~~~~~~~~l~~ 438 (732)
.-+-+|.+++..+. ...+..
T Consensus 314 ~~~~~~p~i~~~~~~~~~--~~~l~~ 337 (386)
T PF14583_consen 314 YKIENDPWIYLFDVEAGR--FRKLAR 337 (386)
T ss_dssp -------EEEEEETTTTE--EEEEEE
T ss_pred ceecCCcEEEEeccccCc--eeeeee
Confidence 11367778887663 444443
|
|
| >COG0627 Predicted esterase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.7e-09 Score=107.58 Aligned_cols=231 Identities=16% Similarity=0.133 Sum_probs=147.0
Q ss_pred CCCccEEEEEcCCCCccCC-CCcChhHHHHHHhcCcEEEEEccc--------------CCC-CCchhHHhcccccCCccH
Q 004766 478 DGSHPCLLYGYGGFNISVT-PSFSVSRTILMRHLGAVFCIANIR--------------GGG-EYGEEWHKGGALAKKQNC 541 (732)
Q Consensus 478 ~~~~P~vv~~hG~~~~~~~-~~~~~~~~~~l~~~G~~v~~~~~r--------------G~g-~~g~~~~~~~~~~~~~~~ 541 (732)
+.+.|++++.||--..... ..+. .+....++.|++++.+|.. |++ +|-.+|........ ...
T Consensus 51 ~~~ipV~~~l~G~t~~~~~~~~~~-g~~~~a~~~g~~~~~p~t~~~~~~~~~~vv~p~G~~~sfY~d~~~~~~~~~-~~q 128 (316)
T COG0627 51 GRDIPVLYLLSGLTCNEPNVYLLD-GLRRQADESGWAVVTPDTSPRGAGVNISVVMPLGGGASFYSDWTQPPWASG-PYQ 128 (316)
T ss_pred CCCCCEEEEeCCCCCCCCceEecc-chhhhhhhcCeEEecCCCCcccCCCCccccccCCCccceecccccCccccC-ccc
Confidence 4678888888886443211 1112 2345566788888887432 332 44445555432222 345
Q ss_pred HHHHHHH-HH-HHHHcCCCCC--CcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCcccccccccCC-------CCCcc
Q 004766 542 FDDFISA-SE-YLISAGYTQS--RKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFT-------IGHAW 610 (732)
Q Consensus 542 ~~D~~~~-~~-~l~~~~~~d~--~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~-------~~~~~ 610 (732)
+++|+.. +- .+.+...++. ++.+|.|+||||+-++.++..+||+|+.+.+.+|+++.......+ -+..+
T Consensus 129 ~~tfl~~ELP~~~~~~f~~~~~~~~~aI~G~SMGG~GAl~lA~~~pd~f~~~sS~Sg~~~~s~~~~~~~~~~~~~g~~~~ 208 (316)
T COG0627 129 WETFLTQELPALWEAAFPADGTGDGRAIAGHSMGGYGALKLALKHPDRFKSASSFSGILSPSSPWGPTLAMGDPWGGKAF 208 (316)
T ss_pred hhHHHHhhhhHHHHHhcCcccccCCceeEEEeccchhhhhhhhhCcchhceeccccccccccccccccccccccccCccH
Confidence 6666643 22 2333444454 389999999999999999999999999999999999887443322 11122
Q ss_pred ccccCCCCCHHHHHHHHhcCcccCCCCCCCC---C--CCCCCCCCeEEEEeeCCCCCCC--chHHHHHHHHHHHhhcCCC
Q 004766 611 VSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQ---N--PDKPFQYPSTLLLTADHDDRVV--PLHSLKLLATMQYVLCTSL 683 (732)
Q Consensus 611 ~~~~g~p~~~~~~~~~~~~sp~~~~~~~~~~---~--~~~~~~~~p~Li~~g~~D~~v~--~~~~~~~~~~l~~~~~~~~ 683 (732)
..-||.+.++. .++++|..+++++... . ... ...+++++.+|..|.... -..+.++.++++++
T Consensus 209 ~~~~G~~~~~~----w~~~D~~~~~~~l~~~~~~~~~~~~-~~~~~~~~d~g~ad~~~~~~~~~~~~~~~a~~~~----- 278 (316)
T COG0627 209 NAMLGPDSDPA----WQENDPLSLIEKLVANANTRIWVYG-GSPPELLIDNGPADFFLAANNLSTRAFAEALRAA----- 278 (316)
T ss_pred HHhcCCCcccc----ccccCchhHHHHhhhcccccceecc-cCCCccccccccchhhhhhcccCHHHHHHHHHhc-----
Confidence 23356554432 3466777666541000 0 000 034788999999998764 33388999999988
Q ss_pred CCCCCCCCEEEEEeCCCCCCCCCchHHHHHHHHHHHHHHHHHhCCC
Q 004766 684 ENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLGAS 729 (732)
Q Consensus 684 ~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~~ 729 (732)
|.+..++..++..|.... ....+...+.|+.+.|+..
T Consensus 279 -----g~~~~~~~~~~G~Hsw~~----w~~~l~~~~~~~a~~l~~~ 315 (316)
T COG0627 279 -----GIPNGVRDQPGGDHSWYF----WASQLADHLPWLAGALGLA 315 (316)
T ss_pred -----CCCceeeeCCCCCcCHHH----HHHHHHHHHHHHHHHhccC
Confidence 899999998888887532 3456678889999988764
|
|
| >PRK06765 homoserine O-acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=8.8e-09 Score=109.49 Aligned_cols=114 Identities=12% Similarity=0.027 Sum_probs=76.6
Q ss_pred CCccEEEEEcCCCCccCC----------CCcChhH---HHHHHhcCcEEEEEcccCCCC--------CchhHHhcccc--
Q 004766 479 GSHPCLLYGYGGFNISVT----------PSFSVSR---TILMRHLGAVFCIANIRGGGE--------YGEEWHKGGAL-- 535 (732)
Q Consensus 479 ~~~P~vv~~hG~~~~~~~----------~~~~~~~---~~~l~~~G~~v~~~~~rG~g~--------~g~~~~~~~~~-- 535 (732)
.+.++||+.|+--+.+.. +.|...+ -..++..-|-|+++|+-|++. .|..-...+.+
T Consensus 54 ~~~n~vlv~h~~tg~~h~~~~~~~~~~~~gww~~~iG~g~~lDt~~yfvi~~n~lG~~~~~~p~~g~tgp~s~~p~tg~~ 133 (389)
T PRK06765 54 AKSNVILITHYFSATSHAAGKYTADDEESGYWDGLIGPGKAIDTNKYFVISTDTLCNVQVKDPNVITTGPASINPKTGKP 133 (389)
T ss_pred CCCCEEEEeCCCCCchhhcccccccCCCcccHHhccCCCCCcCCCceEEEEecccCCCcCCCCCCCCCCCCCCCcCCCCc
Confidence 345899999997664311 2232211 234566789999999998752 23221111111
Q ss_pred ---cCCccHHHHHHHHHHHHHHcCCCCCCcEE-EEecChhHHHHHHHHhhCCCeeeEEEEcCC
Q 004766 536 ---AKKQNCFDDFISASEYLISAGYTQSRKLC-IEGGSNGGLLVGACINQRPDLFGCALAHVG 594 (732)
Q Consensus 536 ---~~~~~~~~D~~~~~~~l~~~~~~d~~~i~-i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p 594 (732)
.....++.|+.+++..|++.- .-+++. ++|+||||++++.++.++|++++.+|+.+.
T Consensus 134 ~~~~fP~~t~~d~~~~~~~ll~~l--gi~~~~~vvG~SmGG~ial~~a~~~P~~v~~lv~ia~ 194 (389)
T PRK06765 134 YGMDFPVVTILDFVRVQKELIKSL--GIARLHAVMGPSMGGMQAQEWAVHYPHMVERMIGVIG 194 (389)
T ss_pred cCCCCCcCcHHHHHHHHHHHHHHc--CCCCceEEEEECHHHHHHHHHHHHChHhhheEEEEec
Confidence 233467899998888877652 235775 999999999999999999999999887643
|
|
| >PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.2e-08 Score=127.18 Aligned_cols=245 Identities=13% Similarity=0.044 Sum_probs=132.2
Q ss_pred EEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCccHHHH
Q 004766 465 IPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDD 544 (732)
Q Consensus 465 i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D 544 (732)
+.+++.+...- .....|+||++||..+... .|.. +...|. .+|.|+++|.||.|.....-...........++++
T Consensus 1356 ~~~~i~~~~~G-~~~~~~~vVllHG~~~s~~--~w~~-~~~~L~-~~~rVi~~Dl~G~G~S~~~~~~~~~~~~~~~si~~ 1430 (1655)
T PLN02980 1356 FSCLIKVHEVG-QNAEGSVVLFLHGFLGTGE--DWIP-IMKAIS-GSARCISIDLPGHGGSKIQNHAKETQTEPTLSVEL 1430 (1655)
T ss_pred eEEEEEEEecC-CCCCCCeEEEECCCCCCHH--HHHH-HHHHHh-CCCEEEEEcCCCCCCCCCccccccccccccCCHHH
Confidence 55555443321 1234689999999877653 3443 345566 67999999999988653210000000111234566
Q ss_pred HHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCcccccc--cc---cC----------CCC--
Q 004766 545 FISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLR--YH---KF----------TIG-- 607 (732)
Q Consensus 545 ~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~--~~---~~----------~~~-- 607 (732)
+.+.+..++++ ...+++.++|+||||.++..++.++|++++++|+..+...+.. .. .. ..+
T Consensus 1431 ~a~~l~~ll~~--l~~~~v~LvGhSmGG~iAl~~A~~~P~~V~~lVlis~~p~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 1508 (1655)
T PLN02980 1431 VADLLYKLIEH--ITPGKVTLVGYSMGARIALYMALRFSDKIEGAVIISGSPGLKDEVARKIRSAKDDSRARMLIDHGLE 1508 (1655)
T ss_pred HHHHHHHHHHH--hCCCCEEEEEECHHHHHHHHHHHhChHhhCEEEEECCCCccCchHHHHHHhhhhhHHHHHHHhhhHH
Confidence 66665555554 2356899999999999999999999999999987654321110 00 00 000
Q ss_pred ---Cccccc--cCCC-CCHHHHH----------------HHHhcCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCc
Q 004766 608 ---HAWVSD--FGCS-EEEEEFY----------------WLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVP 665 (732)
Q Consensus 608 ---~~~~~~--~g~p-~~~~~~~----------------~~~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~ 665 (732)
..|... +-.. ..+...+ .+...+..... .. .+....+..|+|+++|++|..++
T Consensus 1509 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-dl---~~~L~~I~~PtLlI~Ge~D~~~~- 1583 (1655)
T PLN02980 1509 IFLENWYSGELWKSLRNHPHFNKIVASRLLHKDVPSLAKLLSDLSIGRQP-SL---WEDLKQCDTPLLLVVGEKDVKFK- 1583 (1655)
T ss_pred HHHHHhccHHHhhhhccCHHHHHHHHHHHhcCCHHHHHHHHHHhhhcccc-hH---HHHHhhCCCCEEEEEECCCCccH-
Confidence 001100 0000 0111000 01111100000 00 00011378899999999998764
Q ss_pred hHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeCCCCCCCCCchHHHHHHHHHHHHHHHHH
Q 004766 666 LHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKM 725 (732)
Q Consensus 666 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~ 725 (732)
..+.++.+.+.+..... ...+..-+++++++++||...-... ......+..||.+.
T Consensus 1584 ~~a~~~~~~i~~a~~~~--~~~~~~~a~lvvI~~aGH~~~lE~P--e~f~~~I~~FL~~~ 1639 (1655)
T PLN02980 1584 QIAQKMYREIGKSKESG--NDKGKEIIEIVEIPNCGHAVHLENP--LPVIRALRKFLTRL 1639 (1655)
T ss_pred HHHHHHHHHcccccccc--ccccccceEEEEECCCCCchHHHCH--HHHHHHHHHHHHhc
Confidence 66677766664320000 0000112689999999998765433 24556677888764
|
|
| >PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.3e-08 Score=95.93 Aligned_cols=180 Identities=13% Similarity=0.038 Sum_probs=104.3
Q ss_pred EEEEEcCCCCccCCCCcChhHHHHHHhcC--cEEEEEcccCCCCCchhHHhcccccCCccHHHHHHHHHHHHHHcCCCCC
Q 004766 483 CLLYGYGGFNISVTPSFSVSRTILMRHLG--AVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQS 560 (732)
Q Consensus 483 ~vv~~hG~~~~~~~~~~~~~~~~~l~~~G--~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~ 560 (732)
.|+|+||.-.+..+.-. ....+++++.| ..+..+|.+- ..++.++.++.++++. .+
T Consensus 1 ~ilYlHGF~Ssp~S~Ka-~~l~~~~~~~~~~~~~~~p~l~~-------------------~p~~a~~~l~~~i~~~--~~ 58 (187)
T PF05728_consen 1 MILYLHGFNSSPQSFKA-QALKQYFAEHGPDIQYPCPDLPP-------------------FPEEAIAQLEQLIEEL--KP 58 (187)
T ss_pred CeEEecCCCCCCCCHHH-HHHHHHHHHhCCCceEECCCCCc-------------------CHHHHHHHHHHHHHhC--CC
Confidence 37999996544322111 12345566555 3445555432 2355666667777663 34
Q ss_pred CcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCcccccccccCCCCC----ccccccCCCCCHHHHHHHHhcCcccCCC
Q 004766 561 RKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGH----AWVSDFGCSEEEEEFYWLIKYSPLHNVR 636 (732)
Q Consensus 561 ~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~----~~~~~~g~p~~~~~~~~~~~~sp~~~~~ 636 (732)
+.++++|.|+||+.+.+++.+++ .++ |+..|.+.+......-.|. .|.++|. -++.....++++ ....
T Consensus 59 ~~~~liGSSlGG~~A~~La~~~~--~~a-vLiNPav~p~~~l~~~iG~~~~~~~~e~~~--~~~~~~~~l~~l---~~~~ 130 (187)
T PF05728_consen 59 ENVVLIGSSLGGFYATYLAERYG--LPA-VLINPAVRPYELLQDYIGEQTNPYTGESYE--LTEEHIEELKAL---EVPY 130 (187)
T ss_pred CCeEEEEEChHHHHHHHHHHHhC--CCE-EEEcCCCCHHHHHHHhhCccccCCCCccce--echHhhhhcceE---eccc
Confidence 45999999999999999988864 444 7778887765544322222 2212221 122222223322 2111
Q ss_pred CCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeCCCCCCCCCchHHHHHHHH
Q 004766 637 RPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAA 716 (732)
Q Consensus 637 ~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~ 716 (732)
. ...-++|++++..|..+++.++.+.+ +. ....+.+|++|.+..- .+...
T Consensus 131 ~---------~~~~~~lvll~~~DEvLd~~~a~~~~---~~--------------~~~~i~~ggdH~f~~f----~~~l~ 180 (187)
T PF05728_consen 131 P---------TNPERYLVLLQTGDEVLDYREAVAKY---RG--------------CAQIIEEGGDHSFQDF----EEYLP 180 (187)
T ss_pred c---------CCCccEEEEEecCCcccCHHHHHHHh---cC--------------ceEEEEeCCCCCCccH----HHHHH
Confidence 1 12348999999999999996654443 32 1334567899999752 34555
Q ss_pred HHHHHH
Q 004766 717 DRYGFM 722 (732)
Q Consensus 717 ~~~~fl 722 (732)
.+.+|+
T Consensus 181 ~i~~f~ 186 (187)
T PF05728_consen 181 QIIAFL 186 (187)
T ss_pred HHHHhh
Confidence 677776
|
One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised. |
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=98.99 E-value=5.3e-07 Score=91.81 Aligned_cols=241 Identities=18% Similarity=0.120 Sum_probs=144.6
Q ss_pred CEEEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceeccc-ccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCC
Q 004766 131 TAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADA-LSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAG 209 (732)
Q Consensus 131 ~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~-~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~ 209 (732)
...+..+.|+|+|++|+.... ...|++|++.+++..... ........+.|+|+++.|+....
T Consensus 9 ~~~i~~~~~~~~~~~l~~~~~-----~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~------------ 71 (289)
T cd00200 9 TGGVTCVAFSPDGKLLATGSG-----DGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSS------------ 71 (289)
T ss_pred CCCEEEEEEcCCCCEEEEeec-----CcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcC------------
Confidence 345778999999999987742 248999999887633211 11112358899999988877643
Q ss_pred CcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCccccccc
Q 004766 210 TETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKR 289 (732)
Q Consensus 210 ~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~ 289 (732)
...|++|++.++.. ...+.. .......+.|+++++.++.... ...+.++++.++.
T Consensus 72 -------~~~i~i~~~~~~~~--~~~~~~--~~~~i~~~~~~~~~~~~~~~~~-----~~~i~~~~~~~~~--------- 126 (289)
T cd00200 72 -------DKTIRLWDLETGEC--VRTLTG--HTSYVSSVAFSPDGRILSSSSR-----DKTIKVWDVETGK--------- 126 (289)
T ss_pred -------CCeEEEEEcCcccc--eEEEec--cCCcEEEEEEcCCCCEEEEecC-----CCeEEEEECCCcE---------
Confidence 23688888876432 222222 2224567899999877655432 2458888887532
Q ss_pred CCCCCcEEeeeccc-ceEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecCCEEEEEEe
Q 004766 290 DGLLPFVKLIDGFD-AQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYL 368 (732)
Q Consensus 290 ~~~~~~~~l~~~~~-~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~~l~~~~~ 368 (732)
....+..... .....|++++..++. ... ...|..+|+.++.....+..+ ...+..+.+.+++..++...
T Consensus 127 ----~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~---~~~i~i~d~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~ 196 (289)
T cd00200 127 ----CLTTLRGHTDWVNSVAFSPDGTFVAS-SSQ---DGTIKLWDLRTGKCVATLTGH--TGEVNSVAFSPDGEKLLSSS 196 (289)
T ss_pred ----EEEEeccCCCcEEEEEEcCcCCEEEE-EcC---CCcEEEEEccccccceeEecC--ccccceEEECCCcCEEEEec
Confidence 1112221111 112247777655443 332 346888888765533333332 24677888887553444444
Q ss_pred cCCeeEEEEEeCCCCceeeecccccceeeEeecccCCcEEEEEEecCCCCceEEEEECCCC
Q 004766 369 SDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTE 429 (732)
Q Consensus 369 ~~g~~~l~~~d~~~g~~~~~l~~~~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~ 429 (732)
.+ ..|.+||+.+++....+......+..+.+++++. ++++.+ ....++.+|+.++
T Consensus 197 ~~--~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~---~~~~i~i~~~~~~ 251 (289)
T cd00200 197 SD--GTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGY-LLASGS---EDGTIRVWDLRTG 251 (289)
T ss_pred CC--CcEEEEECCCCceecchhhcCCceEEEEEcCCCc-EEEEEc---CCCcEEEEEcCCc
Confidence 44 4788999987766555544455667777888744 444433 3457888888765
|
|
| >KOG3101 consensus Esterase D [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.9e-09 Score=96.99 Aligned_cols=215 Identities=14% Similarity=0.125 Sum_probs=131.4
Q ss_pred eeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcC--hhHHHHHHhcCcEEEEEcc--cCCCCCc----------hh
Q 004766 463 TKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFS--VSRTILMRHLGAVFCIANI--RGGGEYG----------EE 528 (732)
Q Consensus 463 ~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~--~~~~~~l~~~G~~v~~~~~--rG~g~~g----------~~ 528 (732)
..+..-++.|++...+++.|+|.|+-|---.. ..|. ..+++..++.|.+|+.||- ||-.--| ..
T Consensus 26 c~Mtf~vylPp~a~~~k~~P~lf~LSGLTCT~--~Nfi~Ksg~qq~As~hgl~vV~PDTSPRG~~v~g~~eswDFG~GAG 103 (283)
T KOG3101|consen 26 CSMTFGVYLPPDAPRGKRCPVLFYLSGLTCTH--ENFIEKSGFQQQASKHGLAVVAPDTSPRGVEVAGDDESWDFGQGAG 103 (283)
T ss_pred cceEEEEecCCCcccCCcCceEEEecCCcccc--hhhHhhhhHHHhHhhcCeEEECCCCCCCccccCCCcccccccCCce
Confidence 56777788898876677799999998864432 2332 2356677779999999984 5532111 12
Q ss_pred HHhcccccCCccHHHHHHHHHHHH---HH--cCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCccccccccc
Q 004766 529 WHKGGALAKKQNCFDDFISASEYL---IS--AGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHK 603 (732)
Q Consensus 529 ~~~~~~~~~~~~~~~D~~~~~~~l---~~--~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~ 603 (732)
|+-....+.-.+.+.=..-+.+.| +. .--+|+.|++|.||||||+-++-...++|.+|+.+.+.+|+.+...--
T Consensus 104 FYvnAt~epw~~~yrMYdYv~kELp~~l~~~~~pld~~k~~IfGHSMGGhGAl~~~Lkn~~kykSvSAFAPI~NP~~cp- 182 (283)
T KOG3101|consen 104 FYVNATQEPWAKHYRMYDYVVKELPQLLNSANVPLDPLKVGIFGHSMGGHGALTIYLKNPSKYKSVSAFAPICNPINCP- 182 (283)
T ss_pred eEEecccchHhhhhhHHHHHHHHHHHHhccccccccchhcceeccccCCCceEEEEEcCcccccceeccccccCcccCc-
Confidence 222221111111111111122222 22 234799999999999999999888889999999999999999875321
Q ss_pred CCCCC-ccccccCCCCCHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchH--HHHHHHHHHHhhc
Q 004766 604 FTIGH-AWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLH--SLKLLATMQYVLC 680 (732)
Q Consensus 604 ~~~~~-~~~~~~g~p~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~--~~~~~~~l~~~~~ 680 (732)
-|. .+....|+ ++..+ .+|++-+.+++.. -..--+||-.|.+|...+ .| +..+.++-..
T Consensus 183 --WGqKAf~gYLG~--~ka~W---~~yDat~lik~y~-------~~~~~ilIdqG~~D~Fl~-~qLlPe~l~~a~~~--- 244 (283)
T KOG3101|consen 183 --WGQKAFTGYLGD--NKAQW---EAYDATHLIKNYR-------GVGDDILIDQGAADNFLA-EQLLPENLLEACKA--- 244 (283)
T ss_pred --chHHHhhcccCC--ChHHH---hhcchHHHHHhcC-------CCCccEEEecCccchhhh-hhcChHHHHHHhhc---
Confidence 000 11112233 44444 4555554444310 022348999999998766 33 4455444442
Q ss_pred CCCCCCCCCCCEEEEEeCCCCCCC
Q 004766 681 TSLENSPQTNPIIGRIERKAGHGV 704 (732)
Q Consensus 681 ~~~~~~~~~~~~~~~~~~~~gH~~ 704 (732)
+...++.++..++-.|..
T Consensus 245 ------~~~~~v~~r~~~gyDHSY 262 (283)
T KOG3101|consen 245 ------TWQAPVVFRLQEGYDHSY 262 (283)
T ss_pred ------cccccEEEEeecCCCcce
Confidence 235789999999999974
|
|
| >COG2936 Predicted acyl esterases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.1e-09 Score=113.82 Aligned_cols=142 Identities=19% Similarity=0.216 Sum_probs=109.0
Q ss_pred ceEEEEEEEccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcCh--hHH---HHHHhcCcEEEEEcccCCC
Q 004766 449 FHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSV--SRT---ILMRHLGAVFCIANIRGGG 523 (732)
Q Consensus 449 ~~~~~~~~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~--~~~---~~l~~~G~~v~~~~~rG~g 523 (732)
+..+.+.++.+|| ++|..-|++|++. ++.|+++..+-.+-......+.. ... .+++.+||+|+..|+||.+
T Consensus 17 ~~~~~v~V~MRDG-vrL~~dIy~Pa~~---g~~Pvll~~~~~Py~k~~~~~~~~~~~~p~~~~~aa~GYavV~qDvRG~~ 92 (563)
T COG2936 17 YIERDVMVPMRDG-VRLAADIYRPAGA---GPLPVLLSRTRLPYRKRNGTFGPQLSALPQPAWFAAQGYAVVNQDVRGRG 92 (563)
T ss_pred eeeeeeeEEecCC-eEEEEEEEccCCC---CCCceeEEeeccccccccccCcchhhcccccceeecCceEEEEecccccc
Confidence 5667789999999 9999999999974 89999999883322221111111 111 1344499999999999998
Q ss_pred CCchhHHhcccccCCccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCcccccc
Q 004766 524 EYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLR 600 (732)
Q Consensus 524 ~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~ 600 (732)
+....|..-. + ...+|-.++|+||.++.+.+ ++||.+|.|++|+...++|+..|--.+|++...+..|+.+
T Consensus 93 ~SeG~~~~~~----~-~E~~Dg~D~I~Wia~QpWsN-G~Vgm~G~SY~g~tq~~~Aa~~pPaLkai~p~~~~~D~y~ 163 (563)
T COG2936 93 GSEGVFDPES----S-REAEDGYDTIEWLAKQPWSN-GNVGMLGLSYLGFTQLAAAALQPPALKAIAPTEGLVDRYR 163 (563)
T ss_pred cCCcccceec----c-ccccchhHHHHHHHhCCccC-CeeeeecccHHHHHHHHHHhcCCchheeeccccccccccc
Confidence 7655443221 1 36789999999999999987 7999999999999999999988878899999999988643
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.6e-08 Score=101.22 Aligned_cols=231 Identities=16% Similarity=0.117 Sum_probs=149.6
Q ss_pred CCEEEEeEEECCC--CcEEEEEEeccCCceEEEEEEECCCCceeccc-ccceeeeeEEEEeCCcEEEEEEecCCCCCCCC
Q 004766 130 GTAALIKVSVSED--AKYLAYALSYSGSDWATIKLMRIEDQIVEADA-LSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDM 206 (732)
Q Consensus 130 ~~~~~~~~~~SPD--G~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~-~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~ 206 (732)
+...++.+.|+|. +.-||-. +...++++|++++-.++.+. ....+++.++|.|+|+.|.-+++|.
T Consensus 216 H~~~v~~~~fhP~~~~~~lat~-----s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~------- 283 (459)
T KOG0272|consen 216 HTSRVGAAVFHPVDSDLNLATA-----SADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDS------- 283 (459)
T ss_pred cccceeeEEEccCCCccceeee-----ccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeeccccc-------
Confidence 4456889999998 4455533 33357899999886665432 2334568899999999999887654
Q ss_pred CCCCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccc
Q 004766 207 DAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGF 286 (732)
Q Consensus 207 ~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~ 286 (732)
.-.+||+.|+.. ++..+.. ..-+.+++|-|||..++-...+. .. .++|+.++.
T Consensus 284 ------------tWRlWD~~tk~E---lL~QEGH-s~~v~~iaf~~DGSL~~tGGlD~---~~--RvWDlRtgr------ 336 (459)
T KOG0272|consen 284 ------------TWRLWDLETKSE---LLLQEGH-SKGVFSIAFQPDGSLAATGGLDS---LG--RVWDLRTGR------ 336 (459)
T ss_pred ------------chhhcccccchh---hHhhccc-ccccceeEecCCCceeeccCccc---hh--heeecccCc------
Confidence 234678877542 4444433 34456899999999876443322 23 355887753
Q ss_pred cccCCCCCcEEeeecccceEE-EEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEec-CCEEE
Q 004766 287 KKRDGLLPFVKLIDGFDAQYE-VIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVN-LNQMI 364 (732)
Q Consensus 287 ~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~-~~~l~ 364 (732)
+..-|.......+. .|+|+|-+++--+. ....-++|+......-.+..|. ..+..+.+.+ .++++
T Consensus 337 -------~im~L~gH~k~I~~V~fsPNGy~lATgs~----Dnt~kVWDLR~r~~ly~ipAH~--nlVS~Vk~~p~~g~fL 403 (459)
T KOG0272|consen 337 -------CIMFLAGHIKEILSVAFSPNGYHLATGSS----DNTCKVWDLRMRSELYTIPAHS--NLVSQVKYSPQEGYFL 403 (459)
T ss_pred -------EEEEecccccceeeEeECCCceEEeecCC----CCcEEEeeecccccceeccccc--chhhheEecccCCeEE
Confidence 23333333333333 49999977664222 3345667776655333343444 5678888886 47788
Q ss_pred EEEecCCeeEEEEEeCCCCceeeecccccceeeEeecccCCcEEEEEEecCC
Q 004766 365 VSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFL 416 (732)
Q Consensus 365 ~~~~~~g~~~l~~~d~~~g~~~~~l~~~~g~v~~~~~s~d~~~l~~~~ss~~ 416 (732)
++..-| ..+.+|...+...++.+..+.+-|.+++.++|+..+ ..+++.
T Consensus 404 ~TasyD--~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i--~t~s~D 451 (459)
T KOG0272|consen 404 VTASYD--NTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAI--ATSSFD 451 (459)
T ss_pred EEcccC--cceeeecCCCcccchhhcCCccceEEEEeccCCceE--EEeccC
Confidence 888877 467778877778778888778888899999998743 334443
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=98.94 E-value=9.8e-08 Score=96.86 Aligned_cols=237 Identities=11% Similarity=0.084 Sum_probs=153.3
Q ss_pred CcEEEEEEeccCCceEEEEEEECCCCceecccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCCcccEEEE
Q 004766 143 AKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYY 222 (732)
Q Consensus 143 G~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 222 (732)
|.+|.|+.. -+||.+++.+|+.+..+..-.-...+.++|||+.++|++.-.. .+.....||.
T Consensus 50 GD~IiFt~~------DdlWe~slk~g~~~ritS~lGVvnn~kf~pdGrkvaf~rv~~~------------ss~~taDly~ 111 (668)
T COG4946 50 GDRIIFTCC------DDLWEYSLKDGKPLRITSGLGVVNNPKFSPDGRKVAFSRVMLG------------SSLQTADLYV 111 (668)
T ss_pred CcEEEEEec------hHHHHhhhccCCeeEEecccceeccccCCCCCcEEEEEEEEec------------CCCccccEEE
Confidence 789999973 2689999999986655443222467899999999999774321 1334557999
Q ss_pred EECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCC-cceEEEEEEeCCCCCCCcccccccCCCCCcEEeeec
Q 004766 223 HFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENC-DPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDG 301 (732)
Q Consensus 223 ~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~-~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~ 301 (732)
++...++...++-| + ..+..-+.|+|||+.|+.+..... ..-.++|.+..++.. ..+|--
T Consensus 112 v~~e~Ge~kRiTyf-G---r~fT~VaG~~~dg~iiV~TD~~tPF~q~~~lYkv~~dg~~--------------~e~Lnl- 172 (668)
T COG4946 112 VPSEDGEAKRITYF-G---RRFTRVAGWIPDGEIIVSTDFHTPFSQWTELYKVNVDGIK--------------TEPLNL- 172 (668)
T ss_pred EeCCCCcEEEEEEe-c---cccceeeccCCCCCEEEEeccCCCcccceeeeEEccCCce--------------eeeccC-
Confidence 99888887776666 2 223334679999999877643322 113678888877642 222221
Q ss_pred ccceEEEEEecCCeEEEEeC----------CCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecCCEEEEEEecCC
Q 004766 302 FDAQYEVIANDDTVFTFLTN----------KDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDV 371 (732)
Q Consensus 302 ~~~~~~~~s~dg~~l~~~s~----------~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~~l~~~~~~~g 371 (732)
......+-.|| .+++-.| +++.+++||.-. .+++.++.++.-. ..+++..+.+ +++||.+..+|
T Consensus 173 -Gpathiv~~dg-~ivigRntydLP~WK~YkGGtrGklWis~-d~g~tFeK~vdl~--~~vS~PmIV~-~RvYFlsD~eG 246 (668)
T COG4946 173 -GPATHIVIKDG-IIVIGRNTYDLPHWKGYKGGTRGKLWISS-DGGKTFEKFVDLD--GNVSSPMIVG-ERVYFLSDHEG 246 (668)
T ss_pred -CceeeEEEeCC-EEEEccCcccCcccccccCCccceEEEEe-cCCcceeeeeecC--CCcCCceEEc-ceEEEEecccC
Confidence 11222233455 4444333 245577777654 3343355555433 4566677777 89999999999
Q ss_pred eeEEEEEeCCCCceeeecc-cccceeeEeecccCCcEEEEEEecCCCCceEEEEECCCCC
Q 004766 372 KYVLQIRDLKNGSLLHQLP-IEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 430 (732)
Q Consensus 372 ~~~l~~~d~~~g~~~~~l~-~~~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~~ 430 (732)
..+||..|++ |+-+++-+ +...-.. ..+.||++++|+-. +.+|.||+++.+
T Consensus 247 ~GnlYSvdld-GkDlrrHTnFtdYY~R--~~nsDGkrIvFq~~-----GdIylydP~td~ 298 (668)
T COG4946 247 VGNLYSVDLD-GKDLRRHTNFTDYYPR--NANSDGKRIVFQNA-----GDIYLYDPETDS 298 (668)
T ss_pred ccceEEeccC-CchhhhcCCchhcccc--ccCCCCcEEEEecC-----CcEEEeCCCcCc
Confidence 9999999997 87655544 2222221 24568998887644 479999998874
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.1e-06 Score=94.49 Aligned_cols=241 Identities=13% Similarity=0.101 Sum_probs=154.7
Q ss_pred EEEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCce-ecccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCC
Q 004766 132 AALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIV-EADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGT 210 (732)
Q Consensus 132 ~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~-~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~ 210 (732)
..+..++|+--|.+|||.... ..+|-||+..+... +.......+...++.||||+.|+-...+
T Consensus 308 ~~I~t~~~N~tGDWiA~g~~k----lgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eD------------ 371 (893)
T KOG0291|consen 308 QKILTVSFNSTGDWIAFGCSK----LGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAED------------ 371 (893)
T ss_pred ceeeEEEecccCCEEEEcCCc----cceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCC------------
Confidence 346678899999999998754 34788888766552 2222122234789999999988876433
Q ss_pred cccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccC
Q 004766 211 ETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRD 290 (732)
Q Consensus 211 ~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~ 290 (732)
.+|.+|+..++- ++....++..-...+.|+.+|+.|+-.+-+++ +..+|+...
T Consensus 372 -------gKVKvWn~~Sgf----C~vTFteHts~Vt~v~f~~~g~~llssSLDGt-----VRAwDlkRY----------- 424 (893)
T KOG0291|consen 372 -------GKVKVWNTQSGF----CFVTFTEHTSGVTAVQFTARGNVLLSSSLDGT-----VRAWDLKRY----------- 424 (893)
T ss_pred -------CcEEEEeccCce----EEEEeccCCCceEEEEEEecCCEEEEeecCCe-----EEeeeeccc-----------
Confidence 368888876542 33333344445678999999999887766544 666777642
Q ss_pred CCCCcEEeeecccceEEEEEec--CCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecCCEEEEEEe
Q 004766 291 GLLPFVKLIDGFDAQYEVIAND--DTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYL 368 (732)
Q Consensus 291 ~~~~~~~l~~~~~~~~~~~s~d--g~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~~l~~~~~ 368 (732)
+..+..+.+.......++.| |. +++.... ..+.|+++++++|+....|-.|+ ..+.++.+.+.+.++++.+
T Consensus 425 --rNfRTft~P~p~QfscvavD~sGe-lV~AG~~--d~F~IfvWS~qTGqllDiLsGHE--gPVs~l~f~~~~~~LaS~S 497 (893)
T KOG0291|consen 425 --RNFRTFTSPEPIQFSCVAVDPSGE-LVCAGAQ--DSFEIFVWSVQTGQLLDILSGHE--GPVSGLSFSPDGSLLASGS 497 (893)
T ss_pred --ceeeeecCCCceeeeEEEEcCCCC-EEEeecc--ceEEEEEEEeecCeeeehhcCCC--CcceeeEEccccCeEEecc
Confidence 23555555444444444434 55 4444433 36899999999998333343443 6677777777666777777
Q ss_pred cCCeeEEEEEeCCCC-ceeeecccccceeeEeecccCCcEEEEEEecCCCCceEEEEECCCC
Q 004766 369 SDVKYVLQIRDLKNG-SLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTE 429 (732)
Q Consensus 369 ~~g~~~l~~~d~~~g-~~~~~l~~~~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~ 429 (732)
-| ..|++||.=+. ...++|.... .+..++++|||+++.++..+ +++-.+|...+
T Consensus 498 WD--kTVRiW~if~s~~~vEtl~i~s-dvl~vsfrPdG~elaVaTld----gqItf~d~~~~ 552 (893)
T KOG0291|consen 498 WD--KTVRIWDIFSSSGTVETLEIRS-DVLAVSFRPDGKELAVATLD----GQITFFDIKEA 552 (893)
T ss_pred cc--ceEEEEEeeccCceeeeEeecc-ceeEEEEcCCCCeEEEEEec----ceEEEEEhhhc
Confidence 77 47888886321 1235555433 35578899999999876444 45666665543
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.9e-07 Score=95.46 Aligned_cols=206 Identities=12% Similarity=0.012 Sum_probs=120.6
Q ss_pred EeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccC
Q 004766 135 IKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDS 214 (732)
Q Consensus 135 ~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~ 214 (732)
..+.|+|||+.++.+... ...|++||+.+++.+..........+++|+|||+.+++...+.
T Consensus 76 ~~~~~~~~g~~l~~~~~~----~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~--------------- 136 (300)
T TIGR03866 76 ELFALHPNGKILYIANED----DNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETT--------------- 136 (300)
T ss_pred cEEEECCCCCEEEEEcCC----CCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCC---------------
Confidence 357899999987655321 2379999999877543221122236789999999888764321
Q ss_pred CcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCCCC
Q 004766 215 NLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLP 294 (732)
Q Consensus 215 ~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~ 294 (732)
..++.++..+...... +. ... ....+.|+|||++|++.... ...++++|+++++.
T Consensus 137 ---~~~~~~d~~~~~~~~~-~~-~~~---~~~~~~~s~dg~~l~~~~~~----~~~v~i~d~~~~~~------------- 191 (300)
T TIGR03866 137 ---NMAHFIDTKTYEIVDN-VL-VDQ---RPRFAEFTADGKELWVSSEI----GGTVSVIDVATRKV------------- 191 (300)
T ss_pred ---CeEEEEeCCCCeEEEE-EE-cCC---CccEEEECCCCCEEEEEcCC----CCEEEEEEcCccee-------------
Confidence 2355566654321111 11 111 12357899999998765422 24588889887431
Q ss_pred cEEeeec--------ccceEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecCCE-EEE
Q 004766 295 FVKLIDG--------FDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQ-MIV 365 (732)
Q Consensus 295 ~~~l~~~--------~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~~-l~~ 365 (732)
...+... ....-..++|+|+.+++.... ..++.++|+++.+ ....+... ..+..+.+++++. |++
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~---~~~i~v~d~~~~~-~~~~~~~~--~~~~~~~~~~~g~~l~~ 265 (300)
T TIGR03866 192 IKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGP---ANRVAVVDAKTYE-VLDYLLVG--QRVWQLAFTPDEKYLLT 265 (300)
T ss_pred eeeeeecccccccccCCccceEECCCCCEEEEEcCC---CCeEEEEECCCCc-EEEEEEeC--CCcceEEECCCCCEEEE
Confidence 1111100 000112478999887764432 3468889988765 22222222 3456778887654 444
Q ss_pred EEecCCeeEEEEEeCCCCceeeecccc
Q 004766 366 SYLSDVKYVLQIRDLKNGSLLHQLPIE 392 (732)
Q Consensus 366 ~~~~~g~~~l~~~d~~~g~~~~~l~~~ 392 (732)
....+ ..|.+||+.+++.++++..+
T Consensus 266 ~~~~~--~~i~v~d~~~~~~~~~~~~~ 290 (300)
T TIGR03866 266 TNGVS--NDVSVIDVAALKVIKSIKVG 290 (300)
T ss_pred EcCCC--CeEEEEECCCCcEEEEEEcc
Confidence 43333 47999999988876777654
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >PRK05855 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.1e-08 Score=114.93 Aligned_cols=107 Identities=12% Similarity=0.112 Sum_probs=68.4
Q ss_pred EccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhccccc
Q 004766 457 PSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALA 536 (732)
Q Consensus 457 ~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~ 536 (732)
...|| .+|.+..+-+ ...|+||++||..+... .|.. +...|. .||.|+++|+||.|...... .
T Consensus 8 ~~~~g-~~l~~~~~g~------~~~~~ivllHG~~~~~~--~w~~-~~~~L~-~~~~Vi~~D~~G~G~S~~~~------~ 70 (582)
T PRK05855 8 VSSDG-VRLAVYEWGD------PDRPTVVLVHGYPDNHE--VWDG-VAPLLA-DRFRVVAYDVRGAGRSSAPK------R 70 (582)
T ss_pred EeeCC-EEEEEEEcCC------CCCCeEEEEcCCCchHH--HHHH-HHHHhh-cceEEEEecCCCCCCCCCCC------c
Confidence 34588 8887664421 23689999999876542 3443 345566 89999999999987543211 1
Q ss_pred CCccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhh
Q 004766 537 KKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQ 581 (732)
Q Consensus 537 ~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~ 581 (732)
....+++++.+.+..+++.-.. +.++.++|||+||+++..++.+
T Consensus 71 ~~~~~~~~~a~dl~~~i~~l~~-~~~~~lvGhS~Gg~~a~~~a~~ 114 (582)
T PRK05855 71 TAAYTLARLADDFAAVIDAVSP-DRPVHLLAHDWGSIQGWEAVTR 114 (582)
T ss_pred ccccCHHHHHHHHHHHHHHhCC-CCcEEEEecChHHHHHHHHHhC
Confidence 1123455555555554443111 2349999999999888777665
|
|
| >PF03403 PAF-AH_p_II: Platelet-activating factor acetylhydrolase, isoform II; PDB: 3F98_B 3F97_B 3D59_A 3F96_A 3D5E_B 3F9C_A | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.3e-08 Score=105.69 Aligned_cols=126 Identities=15% Similarity=0.160 Sum_probs=66.6
Q ss_pred eeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCc------hh---HH---
Q 004766 463 TKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYG------EE---WH--- 530 (732)
Q Consensus 463 ~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g------~~---~~--- 530 (732)
+++|+..-.| +...+++|+||+-||-.+.+. .|+..... |+++||+|++++.|.+.... .. ..
T Consensus 84 ~~~pa~~~a~--~~~~~~~PvvIFSHGlgg~R~--~yS~~~~e-LAS~GyVV~aieHrDgSa~~t~~~~~~~~~~~~~~~ 158 (379)
T PF03403_consen 84 IRIPAYWNAP--LSPPGKFPVVIFSHGLGGSRT--SYSAICGE-LASHGYVVAAIEHRDGSAPATYFMRDGSGAEVEPYV 158 (379)
T ss_dssp -EESSEET----B--SS-EEEEEEE--TT--TT--TTHHHHHH-HHHTT-EEEEE---SS-SSEEEE-SSHHHHHHT---
T ss_pred cccccccCcc--cccCCCCCEEEEeCCCCcchh--hHHHHHHH-HHhCCeEEEEeccCCCceeEEEeccCCCcccccccc
Confidence 5566542222 223378999999999888753 35544445 55599999999999654221 11 10
Q ss_pred ----hccc---ccC-Cc-----------cHHHHHHHHHHHHHH--c------------------CCCCCCcEEEEecChh
Q 004766 531 ----KGGA---LAK-KQ-----------NCFDDFISASEYLIS--A------------------GYTQSRKLCIEGGSNG 571 (732)
Q Consensus 531 ----~~~~---~~~-~~-----------~~~~D~~~~~~~l~~--~------------------~~~d~~~i~i~G~S~G 571 (732)
+... ... .. .-..|+..+++.|.+ . +.+|.++|+++|||+|
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~R~~QL~~R~~Ei~~~l~~L~~i~~G~~~~~~l~~~~~l~~~~grlD~~~i~~~GHSFG 238 (379)
T PF03403_consen 159 VEYLEEEWIPLRDFDPEEEFELRNAQLRQRVAEIQFVLDALEEINSGDPVENVLPSSFDLSQFKGRLDLSRIGLAGHSFG 238 (379)
T ss_dssp ------EEEE-----GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-----SS--SS-GGGGTT-EEEEEEEEEEETHH
T ss_pred ccccccceeccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccCCccCHHHHhhhcchhheeeeecCch
Confidence 0000 000 00 114566777777653 1 3467899999999999
Q ss_pred HHHHHHHHhhCCCeeeEEEEcCC
Q 004766 572 GLLVGACINQRPDLFGCALAHVG 594 (732)
Q Consensus 572 G~l~~~~~~~~p~~f~a~v~~~p 594 (732)
|..++.++.+ ..+|+|+|+.-|
T Consensus 239 GATa~~~l~~-d~r~~~~I~LD~ 260 (379)
T PF03403_consen 239 GATALQALRQ-DTRFKAGILLDP 260 (379)
T ss_dssp HHHHHHHHHH--TT--EEEEES-
T ss_pred HHHHHHHHhh-ccCcceEEEeCC
Confidence 9999998887 478999996554
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.89 E-value=2e-06 Score=82.55 Aligned_cols=243 Identities=11% Similarity=0.080 Sum_probs=147.3
Q ss_pred EEEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCcee-cccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCC
Q 004766 132 AALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVE-ADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGT 210 (732)
Q Consensus 132 ~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~-~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~ 210 (732)
-.+..+.||+|.|+|.-++ . ...+.|||.-|.... .......-+-..++||.|+.++..-.++
T Consensus 56 ~Ki~~~~ws~Dsr~ivSaS-q----DGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN----------- 119 (343)
T KOG0286|consen 56 NKIYAMDWSTDSRRIVSAS-Q----DGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDN----------- 119 (343)
T ss_pred cceeeeEecCCcCeEEeec-c----CCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCc-----------
Confidence 4467899999999997543 2 247899998876532 1222222346789999999888753322
Q ss_pred cccCCcccEEEEEECCCCCCC--CeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccc
Q 004766 211 ETDSNLYHEFYYHFLGTKQSE--DILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKK 288 (732)
Q Consensus 211 ~~~~~~~~~v~~~~lgt~~~~--~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~ 288 (732)
...|| ++.+...+ ....-+.+.+.+|.....+.+|++.|. .+ + ....-++|++++.
T Consensus 120 ------~Csiy--~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT-~S--G---D~TCalWDie~g~-------- 177 (343)
T KOG0286|consen 120 ------KCSIY--PLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILT-GS--G---DMTCALWDIETGQ-------- 177 (343)
T ss_pred ------eeEEE--ecccccccccceeeeeecCccceeEEEEEcCCCceEe-cC--C---CceEEEEEcccce--------
Confidence 22344 44433211 112222344566776777777776542 22 2 2457788998853
Q ss_pred cCCCCCcEEeeecccceEE--EEEe-cCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecCCEEEE
Q 004766 289 RDGLLPFVKLIDGFDAQYE--VIAN-DDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIV 365 (732)
Q Consensus 289 ~~~~~~~~~l~~~~~~~~~--~~s~-dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~~l~~ 365 (732)
......+...++. .++| +++.++ +. +-...-.++|+..+...+.+..++ ..|..+.++|++.-++
T Consensus 178 ------~~~~f~GH~gDV~slsl~p~~~ntFv--Sg--~cD~~aklWD~R~~~c~qtF~ghe--sDINsv~ffP~G~afa 245 (343)
T KOG0286|consen 178 ------QTQVFHGHTGDVMSLSLSPSDGNTFV--SG--GCDKSAKLWDVRSGQCVQTFEGHE--SDINSVRFFPSGDAFA 245 (343)
T ss_pred ------EEEEecCCcccEEEEecCCCCCCeEE--ec--ccccceeeeeccCcceeEeecccc--cccceEEEccCCCeee
Confidence 1222233333333 3677 666544 22 223346678888776445554444 6688999999778888
Q ss_pred EEecCCeeEEEEEeCCCCceeeecccc--cceeeEeecccCCcEEEEEEecCCCCceEEEEECCCCC
Q 004766 366 SYLSDVKYVLQIRDLKNGSLLHQLPIE--IGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 430 (732)
Q Consensus 366 ~~~~~g~~~l~~~d~~~g~~~~~l~~~--~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~~ 430 (732)
+..+|+ ..+.+|+...+.+.....+ ...+.++.+|..|..|+..|..+ ....+|.-.++
T Consensus 246 tGSDD~--tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~----~c~vWDtlk~e 306 (343)
T KOG0286|consen 246 TGSDDA--TCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDF----TCNVWDTLKGE 306 (343)
T ss_pred ecCCCc--eeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCC----ceeEeeccccc
Confidence 888886 4556677655543333322 45677888888888777667765 47788866654
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.2e-06 Score=89.15 Aligned_cols=222 Identities=17% Similarity=0.126 Sum_probs=136.7
Q ss_pred EEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceeccc-ccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcc
Q 004766 134 LIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADA-LSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTET 212 (732)
Q Consensus 134 ~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~-~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~ 212 (732)
+..+.|+|++++|+.+.. ...|++||+.+++.+... ........+.|+|+++.|+...
T Consensus 54 i~~~~~~~~~~~l~~~~~-----~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~---------------- 112 (289)
T cd00200 54 VRDVAASADGTYLASGSS-----DKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSS---------------- 112 (289)
T ss_pred eeEEEECCCCCEEEEEcC-----CCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEec----------------
Confidence 568899999988887642 258999999987543221 1111347899999976555432
Q ss_pred cCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCC
Q 004766 213 DSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGL 292 (732)
Q Consensus 213 ~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~ 292 (732)
....|++|++.+... ...+. .+......+.++|++++++....+ ..++++|+.++.
T Consensus 113 ---~~~~i~~~~~~~~~~--~~~~~--~~~~~i~~~~~~~~~~~l~~~~~~-----~~i~i~d~~~~~------------ 168 (289)
T cd00200 113 ---RDKTIKVWDVETGKC--LTTLR--GHTDWVNSVAFSPDGTFVASSSQD-----GTIKLWDLRTGK------------ 168 (289)
T ss_pred ---CCCeEEEEECCCcEE--EEEec--cCCCcEEEEEEcCcCCEEEEEcCC-----CcEEEEEccccc------------
Confidence 223688888875422 12222 223345688999998887655422 347888887532
Q ss_pred CCcEEeeecc-cceEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecCCEEEEEEecCC
Q 004766 293 LPFVKLIDGF-DAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDV 371 (732)
Q Consensus 293 ~~~~~l~~~~-~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~~l~~~~~~~g 371 (732)
....+.... ......|+++++.+++.+. ...|..+|+.++.....+..+. ..+..+.+.+++.+++....+
T Consensus 169 -~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----~~~i~i~d~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~~~~~- 240 (289)
T cd00200 169 -CVATLTGHTGEVNSVAFSPDGEKLLSSSS----DGTIKLWDLSTGKCLGTLRGHE--NGVNSVAFSPDGYLLASGSED- 240 (289)
T ss_pred -cceeEecCccccceEEECCCcCEEEEecC----CCcEEEEECCCCceecchhhcC--CceEEEEEcCCCcEEEEEcCC-
Confidence 122222111 1112248888878877654 3468888887655222222332 467788888766677666645
Q ss_pred eeEEEEEeCCCCceeeecccccceeeEeecccCCcEEE
Q 004766 372 KYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVF 409 (732)
Q Consensus 372 ~~~l~~~d~~~g~~~~~l~~~~g~v~~~~~s~d~~~l~ 409 (732)
..|++|++.+++....+......+..+.++++++.++
T Consensus 241 -~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 277 (289)
T cd00200 241 -GTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLA 277 (289)
T ss_pred -CcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEE
Confidence 4788999877766566654455677788888876554
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.87 E-value=5.3e-08 Score=97.54 Aligned_cols=230 Identities=13% Similarity=0.065 Sum_probs=142.1
Q ss_pred CCEEEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecccc-cceeeeeEEEEeC--CcEEEEEEecCCCCCCCC
Q 004766 130 GTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADAL-SWFKFSSIAWTHD--SKGFFYSRYPAPKEGKDM 206 (732)
Q Consensus 130 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~-~~~~~~~~~WspD--g~~l~y~~~~~~~~~~~~ 206 (732)
+...+....+|+|++.||-.+ -+ ..+.||...++..+.... .....+.+.|+|. +..++-.+.|+
T Consensus 174 d~rPis~~~fS~ds~~laT~s-ws----G~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dg------- 241 (459)
T KOG0272|consen 174 DTRPISGCSFSRDSKHLATGS-WS----GLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADG------- 241 (459)
T ss_pred CCCcceeeEeecCCCeEEEee-cC----CceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCC-------
Confidence 345677899999999998553 22 478899998886443222 2224588999998 44666554333
Q ss_pred CCCCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccc
Q 004766 207 DAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGF 286 (732)
Q Consensus 207 ~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~ 286 (732)
.+.+|++.+.. .+-+...+..-+..++|.|+|++|+-.+.+.+ ..++|+.++...
T Consensus 242 ------------tvklw~~~~e~----~l~~l~gH~~RVs~VafHPsG~~L~TasfD~t-----WRlWD~~tk~El---- 296 (459)
T KOG0272|consen 242 ------------TVKLWKLSQET----PLQDLEGHLARVSRVAFHPSGKFLGTASFDST-----WRLWDLETKSEL---- 296 (459)
T ss_pred ------------ceeeeccCCCc----chhhhhcchhhheeeeecCCCceeeecccccc-----hhhcccccchhh----
Confidence 46667765431 22222223334568899999999986665433 456788875311
Q ss_pred cccCCCCCcEEeeecccceE--EEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecCCEEE
Q 004766 287 KKRDGLLPFVKLIDGFDAQY--EVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMI 364 (732)
Q Consensus 287 ~~~~~~~~~~~l~~~~~~~~--~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~~l~ 364 (732)
-+..+....+ ..|.+||..+. ....++ ..+ ++|+.++.++-.|-.|. ..|-++.|+++++.+
T Consensus 297 ----------L~QEGHs~~v~~iaf~~DGSL~~-tGGlD~-~~R--vWDlRtgr~im~L~gH~--k~I~~V~fsPNGy~l 360 (459)
T KOG0272|consen 297 ----------LLQEGHSKGVFSIAFQPDGSLAA-TGGLDS-LGR--VWDLRTGRCIMFLAGHI--KEILSVAFSPNGYHL 360 (459)
T ss_pred ----------HhhcccccccceeEecCCCceee-ccCccc-hhh--eeecccCcEEEEecccc--cceeeEeECCCceEE
Confidence 0112222222 24788887543 222221 223 46888887544444444 567889999988888
Q ss_pred EEEecCCeeEEEEEeCCCCceeeecccccceeeEeecccCCcEEEEEEec
Q 004766 365 VSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTS 414 (732)
Q Consensus 365 ~~~~~~g~~~l~~~d~~~g~~~~~l~~~~g~v~~~~~s~d~~~l~~~~ss 414 (732)
++...| ....+||+..-..+..|+.+..-|+.+-++|+...++++.+-
T Consensus 361 ATgs~D--nt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~Tasy 408 (459)
T KOG0272|consen 361 ATGSSD--NTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASY 408 (459)
T ss_pred eecCCC--CcEEEeeecccccceecccccchhhheEecccCCeEEEEccc
Confidence 888887 467888987444445555556667778888866666655443
|
|
| >KOG4409 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.86 E-value=7.2e-08 Score=96.03 Aligned_cols=104 Identities=14% Similarity=0.061 Sum_probs=71.5
Q ss_pred CccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchh-HHhcccccCCccHHHHHHHHHHHH-HHcCC
Q 004766 480 SHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEE-WHKGGALAKKQNCFDDFISASEYL-ISAGY 557 (732)
Q Consensus 480 ~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~-~~~~~~~~~~~~~~~D~~~~~~~l-~~~~~ 557 (732)
..+.+|++||...+ .. .|-..+ .-|+ ....|.++|..|.|...+. |... ....-.-|++.++.- +++++
T Consensus 89 ~~~plVliHGyGAg-~g-~f~~Nf-~~La-~~~~vyaiDllG~G~SSRP~F~~d-----~~~~e~~fvesiE~WR~~~~L 159 (365)
T KOG4409|consen 89 NKTPLVLIHGYGAG-LG-LFFRNF-DDLA-KIRNVYAIDLLGFGRSSRPKFSID-----PTTAEKEFVESIEQWRKKMGL 159 (365)
T ss_pred CCCcEEEEeccchh-HH-HHHHhh-hhhh-hcCceEEecccCCCCCCCCCCCCC-----cccchHHHHHHHHHHHHHcCC
Confidence 34557788884332 21 233333 3356 5999999999997765432 2221 222334677777744 45555
Q ss_pred CCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCc
Q 004766 558 TQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGV 595 (732)
Q Consensus 558 ~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~ 595 (732)
+|+.++|||+||||+..+|.+||++++-+|+..|.
T Consensus 160 ---~KmilvGHSfGGYLaa~YAlKyPerV~kLiLvsP~ 194 (365)
T KOG4409|consen 160 ---EKMILVGHSFGGYLAAKYALKYPERVEKLILVSPW 194 (365)
T ss_pred ---cceeEeeccchHHHHHHHHHhChHhhceEEEeccc
Confidence 48999999999999999999999999999988774
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.85 E-value=6.3e-06 Score=78.74 Aligned_cols=243 Identities=11% Similarity=0.066 Sum_probs=151.0
Q ss_pred CCEEEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCC-----ceeccccc-ceeeeeEEEEeCCcEEEEEEecCCCCC
Q 004766 130 GTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQ-----IVEADALS-WFKFSSIAWTHDSKGFFYSRYPAPKEG 203 (732)
Q Consensus 130 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g-----~~~~~~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~ 203 (732)
++-.+...+..+.+.-+.+..+++ ..+.+|++... .++....+ .-..+.++-|+||.+.+-.+
T Consensus 14 h~d~Vt~la~~~~~~~~l~sasrD----k~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~s------- 82 (315)
T KOG0279|consen 14 HTDWVTALAIKIKNSDILVSASRD----KTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSAS------- 82 (315)
T ss_pred CCceEEEEEeecCCCceEEEcccc----eEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEecc-------
Confidence 444566788888888888776542 57888887643 22221111 11247789999998666543
Q ss_pred CCCCCCCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCc
Q 004766 204 KDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGL 283 (732)
Q Consensus 204 ~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~ 283 (732)
....+++||+.+++... .|.+. ..-..++++|||.++|+-.+.+ ..+-+++.-+. +
T Consensus 83 ------------wD~~lrlWDl~~g~~t~--~f~GH--~~dVlsva~s~dn~qivSGSrD-----kTiklwnt~g~-c-- 138 (315)
T KOG0279|consen 83 ------------WDGTLRLWDLATGESTR--RFVGH--TKDVLSVAFSTDNRQIVSGSRD-----KTIKLWNTLGV-C-- 138 (315)
T ss_pred ------------ccceEEEEEecCCcEEE--EEEec--CCceEEEEecCCCceeecCCCc-----ceeeeeeeccc-E--
Confidence 34479999999886553 34332 2345799999999998644332 33666665542 1
Q ss_pred ccccccCCCCCcEEeeecccceE---EEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecC
Q 004766 284 EGFKKRDGLLPFVKLIDGFDAQY---EVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNL 360 (732)
Q Consensus 284 ~~~~~~~~~~~~~~l~~~~~~~~---~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~ 360 (732)
.-.+..+...++ ..|+|+....++++... ...|-++|+++-+-....+.+. ..+..+.+++|
T Consensus 139 -----------k~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~--DktvKvWnl~~~~l~~~~~gh~--~~v~t~~vSpD 203 (315)
T KOG0279|consen 139 -----------KYTIHEDSHREWVSCVRFSPNESNPIIVSASW--DKTVKVWNLRNCQLRTTFIGHS--GYVNTVTVSPD 203 (315)
T ss_pred -----------EEEEecCCCcCcEEEEEEcCCCCCcEEEEccC--CceEEEEccCCcchhhcccccc--ccEEEEEECCC
Confidence 111222211222 24899876666665432 3357778888766333444444 67888999998
Q ss_pred CEEEEEEecCCeeEEEEEeCCCCceeeecccccceeeEeecccCCcEEEEEEecCCCCceEEEEECCCCC
Q 004766 361 NQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 430 (732)
Q Consensus 361 ~~l~~~~~~~g~~~l~~~d~~~g~~~~~l~~~~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~~ 430 (732)
+.+.....++| ++++||++.++.+..+. ....|.++.++|.. +++... +...+-.+|++++.
T Consensus 204 GslcasGgkdg--~~~LwdL~~~k~lysl~-a~~~v~sl~fspnr--ywL~~a---t~~sIkIwdl~~~~ 265 (315)
T KOG0279|consen 204 GSLCASGGKDG--EAMLWDLNEGKNLYSLE-AFDIVNSLCFSPNR--YWLCAA---TATSIKIWDLESKA 265 (315)
T ss_pred CCEEecCCCCc--eEEEEEccCCceeEecc-CCCeEeeEEecCCc--eeEeec---cCCceEEEeccchh
Confidence 88988877774 78899998787655554 24456677777754 333222 22348888888774
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.8e-06 Score=94.81 Aligned_cols=243 Identities=16% Similarity=0.095 Sum_probs=145.7
Q ss_pred CEEEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCc--eeccc-ccceeeeeEEEEeCCcEEEEEEecCCCCCCCCC
Q 004766 131 TAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQI--VEADA-LSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMD 207 (732)
Q Consensus 131 ~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~--~~~~~-~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~ 207 (732)
..++....+||||++++.... ...++++++.+++ .+... .....+..++|||||+.|+-.+.
T Consensus 159 ~~sv~~~~fs~~g~~l~~~~~-----~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~---------- 223 (456)
T KOG0266|consen 159 CPSVTCVDFSPDGRALAAASS-----DGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSD---------- 223 (456)
T ss_pred cCceEEEEEcCCCCeEEEccC-----CCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecC----------
Confidence 355677899999999887642 1478888886666 22221 12223578999999996665543
Q ss_pred CCCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCccccc
Q 004766 208 AGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFK 287 (732)
Q Consensus 208 ~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~ 287 (732)
..+|+.|++..+. . .+.....+..++..++|+|+|+.|+..+.+ ..+.++|+.+++
T Consensus 224 ---------D~tiriwd~~~~~-~--~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D-----~tvriWd~~~~~------- 279 (456)
T KOG0266|consen 224 ---------DKTLRIWDLKDDG-R--NLKTLKGHSTYVTSVAFSPDGNLLVSGSDD-----GTVRIWDVRTGE------- 279 (456)
T ss_pred ---------CceEEEeeccCCC-e--EEEEecCCCCceEEEEecCCCCEEEEecCC-----CcEEEEeccCCe-------
Confidence 3478899983221 2 222233455677899999999665544433 337788887743
Q ss_pred ccCCCCCcEEeeecccceE-EEEEecCCeEEEEeCCCCCCceEEEEeCCCCC--CceEeccCCCCC-ceeEEEEecCCEE
Q 004766 288 KRDGLLPFVKLIDGFDAQY-EVIANDDTVFTFLTNKDAPKYKIIRVDLKEPN--DWFEVIPEAERD-VLESATAVNLNQM 363 (732)
Q Consensus 288 ~~~~~~~~~~l~~~~~~~~-~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~--~~~~l~~~~~~~-~l~~~~~~~~~~l 363 (732)
+.+.+....+... ..++++|..|+.. .. +..|..+|+.++. ....+.... .. .+..+.+++++..
T Consensus 280 ------~~~~l~~hs~~is~~~f~~d~~~l~s~-s~---d~~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~~fsp~~~~ 348 (456)
T KOG0266|consen 280 ------CVRKLKGHSDGISGLAFSPDGNLLVSA-SY---DGTIRVWDLETGSKLCLKLLSGAE-NSAPVTSVQFSPNGKY 348 (456)
T ss_pred ------EEEeeeccCCceEEEEECCCCCEEEEc-CC---CccEEEEECCCCceeeeecccCCC-CCCceeEEEECCCCcE
Confidence 2334443333222 2477888776643 22 4568889998876 123344333 23 5777888876555
Q ss_pred EEEEecCCeeEEEEEeCCCCceeeecccccc---eeeEeecccCCcEEEEEEecCCCCceEEEEECCCC
Q 004766 364 IVSYLSDVKYVLQIRDLKNGSLLHQLPIEIG---SVNAISARREDSVVFISFTSFLIPGIVYQCNLKTE 429 (732)
Q Consensus 364 ~~~~~~~g~~~l~~~d~~~g~~~~~l~~~~g---~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~ 429 (732)
++....+ ..+.+|++..+........... .+.....+..+..++ +. .....++.+|+.++
T Consensus 349 ll~~~~d--~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-sg---~~d~~v~~~~~~s~ 411 (456)
T KOG0266|consen 349 LLSASLD--RTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIY-SG---SEDGSVYVWDSSSG 411 (456)
T ss_pred EEEecCC--CeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEE-EE---eCCceEEEEeCCcc
Confidence 5666555 4788899887766555543322 222233344554333 22 22356888888765
|
|
| >PF00561 Abhydrolase_1: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases | Back alignment and domain information |
|---|
Probab=98.83 E-value=4.3e-09 Score=104.52 Aligned_cols=78 Identities=21% Similarity=0.115 Sum_probs=63.3
Q ss_pred cEEEEEcccCCCCCchhHHhcccccCCccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEE
Q 004766 512 AVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALA 591 (732)
Q Consensus 512 ~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~ 591 (732)
|.|+++|.||.|..... ..........+|+.+.++.+++.- ..+++.++|+|+||.++..++.++|++++++|+
T Consensus 1 f~vi~~d~rG~g~S~~~----~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~vG~S~Gg~~~~~~a~~~p~~v~~lvl 74 (230)
T PF00561_consen 1 FDVILFDLRGFGYSSPH----WDPDFPDYTTDDLAADLEALREAL--GIKKINLVGHSMGGMLALEYAAQYPERVKKLVL 74 (230)
T ss_dssp EEEEEEECTTSTTSSSC----CGSGSCTHCHHHHHHHHHHHHHHH--TTSSEEEEEETHHHHHHHHHHHHSGGGEEEEEE
T ss_pred CEEEEEeCCCCCCCCCC----ccCCcccccHHHHHHHHHHHHHHh--CCCCeEEEEECCChHHHHHHHHHCchhhcCcEE
Confidence 67999999998864321 113445567899999999998862 234699999999999999999999999999999
Q ss_pred cCCc
Q 004766 592 HVGV 595 (732)
Q Consensus 592 ~~p~ 595 (732)
..++
T Consensus 75 ~~~~ 78 (230)
T PF00561_consen 75 ISPP 78 (230)
T ss_dssp ESES
T ss_pred Eeee
Confidence 8885
|
; InterPro: IPR000073 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents fold-1 of alpha/beta hydrolase.; PDB: 2VAT_E 2VAX_C 2VAV_H 2PSJ_A 2PSH_B 2PSE_A 2PSF_A 2PSD_A 2EDA_A 1CIJ_A .... |
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.1e-06 Score=96.41 Aligned_cols=209 Identities=14% Similarity=0.023 Sum_probs=116.9
Q ss_pred CCEEEEeEEECC-CCcEEEEEEeccCCceEEEEEEECCCCce-------ec-ccccceeeeeEEEEeCCcEEEEEEecCC
Q 004766 130 GTAALIKVSVSE-DAKYLAYALSYSGSDWATIKLMRIEDQIV-------EA-DALSWFKFSSIAWTHDSKGFFYSRYPAP 200 (732)
Q Consensus 130 ~~~~~~~~~~SP-DG~~la~~~~~~G~e~~~i~v~dl~~g~~-------~~-~~~~~~~~~~~~WspDg~~l~y~~~~~~ 200 (732)
+.-.+..+.||| |+++||-.. +..+|++||+.++.. +. ..........++|+|++..++++..
T Consensus 74 H~~~V~~v~fsP~d~~~LaSgS-----~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs--- 145 (493)
T PTZ00421 74 QEGPIIDVAFNPFDPQKLFTAS-----EDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAG--- 145 (493)
T ss_pred CCCCEEEEEEcCCCCCEEEEEe-----CCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEe---
Confidence 334578999999 888877542 335899999976531 11 1111123477999998754444421
Q ss_pred CCCCCCCCCCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCC
Q 004766 201 KEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALP 280 (732)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~ 280 (732)
....|.+|++.++.. ...+. .+...+.+++|+|||+.|+..+.+ ..|.++|+.++.
T Consensus 146 ---------------~DgtVrIWDl~tg~~--~~~l~--~h~~~V~sla~spdG~lLatgs~D-----g~IrIwD~rsg~ 201 (493)
T PTZ00421 146 ---------------ADMVVNVWDVERGKA--VEVIK--CHSDQITSLEWNLDGSLLCTTSKD-----KKLNIIDPRDGT 201 (493)
T ss_pred ---------------CCCEEEEEECCCCeE--EEEEc--CCCCceEEEEEECCCCEEEEecCC-----CEEEEEECCCCc
Confidence 234689999987532 22222 233456789999999988765433 348888987642
Q ss_pred CCcccccccCCCCCcEEeeecccc--eEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEe
Q 004766 281 EGLEGFKKRDGLLPFVKLIDGFDA--QYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAV 358 (732)
Q Consensus 281 ~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~ 358 (732)
....+...... ....|.++++.++...........|..+|+.+...............+....++
T Consensus 202 -------------~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d 268 (493)
T PTZ00421 202 -------------IVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFD 268 (493)
T ss_pred -------------EEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEc
Confidence 12222221111 123577777666543322223457888998765421222211111223233444
Q ss_pred cCCEEEEEEe-cCCeeEEEEEeCCCCce
Q 004766 359 NLNQMIVSYL-SDVKYVLQIRDLKNGSL 385 (732)
Q Consensus 359 ~~~~l~~~~~-~~g~~~l~~~d~~~g~~ 385 (732)
++..+++... .+ ..|++|++.+++.
T Consensus 269 ~d~~~L~lggkgD--g~Iriwdl~~~~~ 294 (493)
T PTZ00421 269 EDTNLLYIGSKGE--GNIRCFELMNERL 294 (493)
T ss_pred CCCCEEEEEEeCC--CeEEEEEeeCCce
Confidence 5444444433 34 4788899876654
|
|
| >KOG2112 consensus Lysophospholipase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.4e-07 Score=87.33 Aligned_cols=187 Identities=15% Similarity=0.120 Sum_probs=118.0
Q ss_pred cEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEccc------CCCCCchhHHhcccccCCc-cH---HHHHHHHHHH
Q 004766 482 PCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIR------GGGEYGEEWHKGGALAKKQ-NC---FDDFISASEY 551 (732)
Q Consensus 482 P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~r------G~g~~g~~~~~~~~~~~~~-~~---~~D~~~~~~~ 551 (732)
-+||++||-..+.. .+.....+ +..+..-.++|+.+ -+|..+..|.+........ .. +.-..+.+..
T Consensus 4 atIi~LHglGDsg~--~~~~~~~~-l~l~NiKwIcP~aP~rpvt~~~G~~~~aWfd~~~~~~~~~~d~~~~~~aa~~i~~ 80 (206)
T KOG2112|consen 4 ATIIFLHGLGDSGS--GWAQFLKQ-LPLPNIKWICPTAPSRPVTLNGGAFMNAWFDIMELSSDAPEDEEGLHRAADNIAN 80 (206)
T ss_pred EEEEEEecCCCCCc--cHHHHHHc-CCCCCeeEEcCCCCCCcccccCCCcccceecceeeCcccchhhhHHHHHHHHHHH
Confidence 47999999755432 33222222 44467777777542 3345566677654322211 12 2222333444
Q ss_pred HHHc---CCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCcccccccccCCCCCccccccCCCCCHHHHHHHHh
Q 004766 552 LISA---GYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHAWVSDFGCSEEEEEFYWLIK 628 (732)
Q Consensus 552 l~~~---~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~ 628 (732)
|+++ .-++++||+|.|+|+||.+++.++..+|....+++...++..-.. .+ .|
T Consensus 81 Li~~e~~~Gi~~~rI~igGfs~G~a~aL~~~~~~~~~l~G~~~~s~~~p~~~-----------~~--~~----------- 136 (206)
T KOG2112|consen 81 LIDNEPANGIPSNRIGIGGFSQGGALALYSALTYPKALGGIFALSGFLPRAS-----------IG--LP----------- 136 (206)
T ss_pred HHHHHHHcCCCccceeEcccCchHHHHHHHHhccccccceeeccccccccch-----------hh--cc-----------
Confidence 4433 235789999999999999999999988655455544444332100 00 00
Q ss_pred cCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeCCCCCCCCCch
Q 004766 629 YSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPT 708 (732)
Q Consensus 629 ~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~ 708 (732)
..... ..++|+|..||+.|+.||..-..+....|+.. +..++++.|++.+|....
T Consensus 137 -----~~~~~--------~~~~~i~~~Hg~~d~~vp~~~g~~s~~~l~~~----------~~~~~f~~y~g~~h~~~~-- 191 (206)
T KOG2112|consen 137 -----GWLPG--------VNYTPILLCHGTADPLVPFRFGEKSAQFLKSL----------GVRVTFKPYPGLGHSTSP-- 191 (206)
T ss_pred -----CCccc--------cCcchhheecccCCceeehHHHHHHHHHHHHc----------CCceeeeecCCccccccH--
Confidence 00000 12579999999999999999999999999987 777999999999997653
Q ss_pred HHHHHHHHHHHHHHHH
Q 004766 709 QKMIDEAADRYGFMAK 724 (732)
Q Consensus 709 ~~~~~~~~~~~~fl~~ 724 (732)
+++.++..|+.+
T Consensus 192 ----~e~~~~~~~~~~ 203 (206)
T KOG2112|consen 192 ----QELDDLKSWIKT 203 (206)
T ss_pred ----HHHHHHHHHHHH
Confidence 344566777765
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=98.82 E-value=3.9e-07 Score=87.39 Aligned_cols=146 Identities=14% Similarity=0.083 Sum_probs=89.8
Q ss_pred eEEECCCCcEEEEEEecc----CCc---eEEEEEEECCCCceeccccc-ceeeeeEEEEeCCcEEEEEEecCCCCCCCCC
Q 004766 136 KVSVSEDAKYLAYALSYS----GSD---WATIKLMRIEDQIVEADALS-WFKFSSIAWTHDSKGFFYSRYPAPKEGKDMD 207 (732)
Q Consensus 136 ~~~~SPDG~~la~~~~~~----G~e---~~~i~v~dl~~g~~~~~~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~ 207 (732)
.+.|+|+|++|++.++.. +.. ...|+.++..+.......+. ...+..++|+|+|+.|+++...
T Consensus 10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~--------- 80 (194)
T PF08662_consen 10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGS--------- 80 (194)
T ss_pred EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEcc---------
Confidence 577999999999998732 111 24677777665543222221 1125889999999999887521
Q ss_pred CCCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCccccc
Q 004766 208 AGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFK 287 (732)
Q Consensus 208 ~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~ 287 (732)
.+.+|.++++.. + .++..... ....+.|||+|++|++....+. ..++.++|..+..
T Consensus 81 --------~~~~v~lyd~~~---~--~i~~~~~~--~~n~i~wsP~G~~l~~~g~~n~--~G~l~~wd~~~~~------- 136 (194)
T PF08662_consen 81 --------MPAKVTLYDVKG---K--KIFSFGTQ--PRNTISWSPDGRFLVLAGFGNL--NGDLEFWDVRKKK------- 136 (194)
T ss_pred --------CCcccEEEcCcc---c--EeEeecCC--CceEEEECCCCCEEEEEEccCC--CcEEEEEECCCCE-------
Confidence 233567777642 2 33333222 2346899999999998765433 3568888987521
Q ss_pred ccCCCCCcEEeeecccceEEEEEecCCeEEEEeC
Q 004766 288 KRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTN 321 (732)
Q Consensus 288 ~~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~ 321 (732)
.+.. ..........|+|||++|+..+.
T Consensus 137 ------~i~~-~~~~~~t~~~WsPdGr~~~ta~t 163 (194)
T PF08662_consen 137 ------KIST-FEHSDATDVEWSPDGRYLATATT 163 (194)
T ss_pred ------Eeec-cccCcEEEEEEcCCCCEEEEEEe
Confidence 0111 11222233469999999887654
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.8e-06 Score=79.72 Aligned_cols=227 Identities=15% Similarity=0.134 Sum_probs=133.0
Q ss_pred eEEeCCCCcCCC-------CCEEEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecccccceeeeeEEEEeCCc
Q 004766 118 KVLLDPNTLSDD-------GTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWFKFSSIAWTHDSK 190 (732)
Q Consensus 118 ~~l~D~~~l~~~-------~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~~~~~~~~~~WspDg~ 190 (732)
..|+|.|.-.+. +...+..+.|--||+++. .|+|..+++|||+..-.....-........+.-.|+-.
T Consensus 63 vRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMy-----TgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQt 137 (311)
T KOG0315|consen 63 VRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMY-----TGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQT 137 (311)
T ss_pred eEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEE-----ecCCCceEEEEeccCcccchhccCCCCcceEEecCCcc
Confidence 346676544331 234577888999999986 45677899999998633211111112236677777766
Q ss_pred EEEEEEecCCCCCCCCCCCCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEE
Q 004766 191 GFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNK 270 (732)
Q Consensus 191 ~l~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~ 270 (732)
.|+... ....|+.|++++..-..+++ |+....+.++..-|||++++...+. ..
T Consensus 138 eLis~d-------------------qsg~irvWDl~~~~c~~~li---Pe~~~~i~sl~v~~dgsml~a~nnk-----G~ 190 (311)
T KOG0315|consen 138 ELISGD-------------------QSGNIRVWDLGENSCTHELI---PEDDTSIQSLTVMPDGSMLAAANNK-----GN 190 (311)
T ss_pred eEEeec-------------------CCCcEEEEEccCCccccccC---CCCCcceeeEEEcCCCcEEEEecCC-----cc
Confidence 666542 23469999999875544433 2223456789999999999766443 34
Q ss_pred EEEEeCCCCCCCcccccccCCCCCcEEeeecccceE-EEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCC
Q 004766 271 VYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQY-EVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAER 349 (732)
Q Consensus 271 l~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~ 349 (732)
.|++++-+.... .+-.|..++........ ..+|||+++|+-.+.+ ..++.++.++.-.....+. ...
T Consensus 191 cyvW~l~~~~~~-------s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssd----ktv~iwn~~~~~kle~~l~-gh~ 258 (311)
T KOG0315|consen 191 CYVWRLLNHQTA-------SELEPVHKFQAHNGHILRCLLSPDVKYLATCSSD----KTVKIWNTDDFFKLELVLT-GHQ 258 (311)
T ss_pred EEEEEccCCCcc-------ccceEhhheecccceEEEEEECCCCcEEEeecCC----ceEEEEecCCceeeEEEee-cCC
Confidence 888887663211 00111222221111111 2589999988755443 2455565555411122222 222
Q ss_pred CceeEEEEecCCEEEEEEecCCeeEEEEEeCCCCceeeecc
Q 004766 350 DVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLP 390 (732)
Q Consensus 350 ~~l~~~~~~~~~~l~~~~~~~g~~~l~~~d~~~g~~~~~l~ 390 (732)
..+=+..++.++..+++...+ ....+|++..|+.++.-.
T Consensus 259 rWvWdc~FS~dg~YlvTassd--~~~rlW~~~~~k~v~qy~ 297 (311)
T KOG0315|consen 259 RWVWDCAFSADGEYLVTASSD--HTARLWDLSAGKEVRQYQ 297 (311)
T ss_pred ceEEeeeeccCccEEEecCCC--CceeecccccCceeeecC
Confidence 456666777767777787777 456778888787644443
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.3e-05 Score=81.23 Aligned_cols=117 Identities=9% Similarity=0.102 Sum_probs=72.1
Q ss_pred cccceEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCC--CceEeccCCCCCceeEEEEecCCEEEEEEecCCeeEEEEE
Q 004766 301 GFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPN--DWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIR 378 (732)
Q Consensus 301 ~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~--~~~~l~~~~~~~~l~~~~~~~~~~l~~~~~~~g~~~l~~~ 378 (732)
++......++|+++.+++- +...+|..+.+.+.. +-..+..+. ..+..++.++|...++..... .++.+|
T Consensus 443 ~y~~s~vAv~~~~~~vaVG----G~Dgkvhvysl~g~~l~ee~~~~~h~--a~iT~vaySpd~~yla~~Da~--rkvv~y 514 (603)
T KOG0318|consen 443 GYESSAVAVSPDGSEVAVG----GQDGKVHVYSLSGDELKEEAKLLEHR--AAITDVAYSPDGAYLAAGDAS--RKVVLY 514 (603)
T ss_pred ccccceEEEcCCCCEEEEe----cccceEEEEEecCCcccceeeeeccc--CCceEEEECCCCcEEEEeccC--CcEEEE
Confidence 3444444688998877752 334456666666543 122344444 678899999966666555444 578899
Q ss_pred eCCCCcee-eecccccceeeEeecccCCcEEEEEEecCCCCceEEEEECCCC
Q 004766 379 DLKNGSLL-HQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTE 429 (732)
Q Consensus 379 d~~~g~~~-~~l~~~~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~ 429 (732)
|+++.+.. ..-.++..-+..++++|+...+ ...|..+ .++.|+++..
T Consensus 515 d~~s~~~~~~~w~FHtakI~~~aWsP~n~~v--ATGSlDt--~Viiysv~kP 562 (603)
T KOG0318|consen 515 DVASREVKTNRWAFHTAKINCVAWSPNNKLV--ATGSLDT--NVIIYSVKKP 562 (603)
T ss_pred EcccCceecceeeeeeeeEEEEEeCCCceEE--Eeccccc--eEEEEEccCh
Confidence 99866541 2234455667788999987633 4445544 5667776654
|
|
| >TIGR01838 PHA_synth_I poly(R)-hydroxyalkanoic acid synthase, class I | Back alignment and domain information |
|---|
Probab=98.77 E-value=2e-07 Score=102.09 Aligned_cols=111 Identities=15% Similarity=0.072 Sum_probs=71.9
Q ss_pred CccEEEEEcCCCCccCCCCcC--hhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCccHHHHHHHHHHHHHHcCC
Q 004766 480 SHPCLLYGYGGFNISVTPSFS--VSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGY 557 (732)
Q Consensus 480 ~~P~vv~~hG~~~~~~~~~~~--~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~ 557 (732)
..+.||++||........... .++..+|.++||.|+++|.||.|.....+ .......+++.++++++.+.
T Consensus 187 ~~~PlLiVp~~i~k~yilDL~p~~Slv~~L~~qGf~V~~iDwrgpg~s~~~~------~~ddY~~~~i~~al~~v~~~-- 258 (532)
T TIGR01838 187 HKTPLLIVPPWINKYYILDLRPQNSLVRWLVEQGHTVFVISWRNPDASQADK------TFDDYIRDGVIAALEVVEAI-- 258 (532)
T ss_pred CCCcEEEECcccccceeeecccchHHHHHHHHCCcEEEEEECCCCCcccccC------ChhhhHHHHHHHHHHHHHHh--
Confidence 345577888865432222222 23456666699999999999977543221 11123445678888888764
Q ss_pred CCCCcEEEEecChhHHHHHH----HHhhC-CCeeeEEEEcCCcccc
Q 004766 558 TQSRKLCIEGGSNGGLLVGA----CINQR-PDLFGCALAHVGVMDM 598 (732)
Q Consensus 558 ~d~~~i~i~G~S~GG~l~~~----~~~~~-p~~f~a~v~~~p~~d~ 598 (732)
+..+++.++|+|+||.+++. ++..+ |++.++++.....+|.
T Consensus 259 ~g~~kv~lvG~cmGGtl~a~ala~~aa~~~~~rv~slvll~t~~Df 304 (532)
T TIGR01838 259 TGEKQVNCVGYCIGGTLLSTALAYLAARGDDKRIKSATFFTTLLDF 304 (532)
T ss_pred cCCCCeEEEEECcCcHHHHHHHHHHHHhCCCCccceEEEEecCcCC
Confidence 45679999999999998632 34444 7788888776665554
|
This model represents the class I subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs with three to five carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell. |
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.3e-07 Score=89.67 Aligned_cols=241 Identities=12% Similarity=0.065 Sum_probs=145.9
Q ss_pred EEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecccccc---------eeeeeEEEEeCCcEEEEEEecCCCCCC
Q 004766 134 LIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSW---------FKFSSIAWTHDSKGFFYSRYPAPKEGK 204 (732)
Q Consensus 134 ~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~~~---------~~~~~~~WspDg~~l~y~~~~~~~~~~ 204 (732)
+...+|||||++|+- |+-..-|.|||..+|+...+-.-. ...-.+.||.|+..++-.+.
T Consensus 216 ~EcA~FSPDgqyLvs-----gSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsq------- 283 (508)
T KOG0275|consen 216 VECARFSPDGQYLVS-----GSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQ------- 283 (508)
T ss_pred hhheeeCCCCceEee-----ccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCc-------
Confidence 456789999999983 444457999999999854322111 11345677777776665433
Q ss_pred CCCCCCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcc
Q 004766 205 DMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLE 284 (732)
Q Consensus 205 ~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~ 284 (732)
..+|.+|++.|++.-. -|+.. +..-+..+.||.|+.+|+-.+.+.. +.+--+.+|+
T Consensus 284 ------------DGkIKvWri~tG~ClR--rFdrA-HtkGvt~l~FSrD~SqiLS~sfD~t-----vRiHGlKSGK---- 339 (508)
T KOG0275|consen 284 ------------DGKIKVWRIETGQCLR--RFDRA-HTKGVTCLSFSRDNSQILSASFDQT-----VRIHGLKSGK---- 339 (508)
T ss_pred ------------CCcEEEEEEecchHHH--Hhhhh-hccCeeEEEEccCcchhhcccccce-----EEEeccccch----
Confidence 2357778887775321 12211 2234568899999999875543322 3333344432
Q ss_pred cccccCCCCCcEEeeeccc-ceEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecC--C
Q 004766 285 GFKKRDGLLPFVKLIDGFD-AQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNL--N 361 (732)
Q Consensus 285 ~~~~~~~~~~~~~l~~~~~-~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~--~ 361 (732)
.++....... ..-..|++||.+++-.+.+ +.+-.++.++.++..+.-+...+..+..+.+.+. .
T Consensus 340 ---------~LKEfrGHsSyvn~a~ft~dG~~iisaSsD----gtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpe 406 (508)
T KOG0275|consen 340 ---------CLKEFRGHSSYVNEATFTDDGHHIISASSD----GTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPE 406 (508)
T ss_pred ---------hHHHhcCccccccceEEcCCCCeEEEecCC----ccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCc
Confidence 1222111110 0112488999988755443 3577778777765444445455677777777763 4
Q ss_pred EEEEEEecCCeeEEEEEeCCCCceeeecccc---cceeeEeecccCCcEEEEEEecCCCCceEEEEECCCCCC
Q 004766 362 QMIVSYLSDVKYVLQIRDLKNGSLLHQLPIE---IGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTETP 431 (732)
Q Consensus 362 ~l~~~~~~~g~~~l~~~d~~~g~~~~~l~~~---~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~~~ 431 (732)
++++.-+. +.++++++. |+.++.+... .|..-....+|.|..++..... ..+|-+...+|++
T Consensus 407 h~iVCNrs---ntv~imn~q-GQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED----~vlYCF~~~sG~L 471 (508)
T KOG0275|consen 407 HFIVCNRS---NTVYIMNMQ-GQVVRSFSSGKREGGDFINAILSPKGEWIYCIGED----GVLYCFSVLSGKL 471 (508)
T ss_pred eEEEEcCC---CeEEEEecc-ceEEeeeccCCccCCceEEEEecCCCcEEEEEccC----cEEEEEEeecCce
Confidence 56655443 479999997 8877777654 3333344568888877766544 4688888888864
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.7e-05 Score=80.62 Aligned_cols=240 Identities=12% Similarity=0.084 Sum_probs=128.5
Q ss_pred EECCCCcEEEEEEe-----ccCCceEEEEEEECCCCceeccccc--------ceeeeeEEEEeCCcEEEEEEecCCCCCC
Q 004766 138 SVSEDAKYLAYALS-----YSGSDWATIKLMRIEDQIVEADALS--------WFKFSSIAWTHDSKGFFYSRYPAPKEGK 204 (732)
Q Consensus 138 ~~SPDG~~la~~~~-----~~G~e~~~i~v~dl~~g~~~~~~~~--------~~~~~~~~WspDg~~l~y~~~~~~~~~~ 204 (732)
.+||||+.|..+.. ..|.+.-.|.|+|+++++.+.+..- ......++.|||||+||+.-...
T Consensus 52 ~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p----- 126 (352)
T TIGR02658 52 VVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSP----- 126 (352)
T ss_pred eECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCC-----
Confidence 49999998877764 1233345899999999986532211 11124789999999888763221
Q ss_pred CCCCCCcccCCcccEEEEEECCCCCCCC-------eEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCC
Q 004766 205 DMDAGTETDSNLYHEFYYHFLGTKQSED-------ILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLS 277 (732)
Q Consensus 205 ~~~~~~~~~~~~~~~v~~~~lgt~~~~~-------~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~ 277 (732)
...|-+.++.++..-. ..+|...+.. ....+.||+.+.+...... . .....
T Consensus 127 ------------~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~----~~~~~~Dg~~~~v~~d~~g--~--~~~~~-- 184 (352)
T TIGR02658 127 ------------SPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDT----FFMHCRDGSLAKVGYGTKG--N--PKIKP-- 184 (352)
T ss_pred ------------CCEEEEEECCCCcEEEEEeCCCCcEEEEecCCc----cEEEeecCceEEEEecCCC--c--eEEee--
Confidence 2346666766543111 0111111100 1123455555544432221 1 11000
Q ss_pred CCCCCcccccccCCCCCcEEeeecc-cc--eEEEEEe-cCCeEEEEeCCCCCCceEEEEeCCCCC-----CceEeccCCC
Q 004766 278 ALPEGLEGFKKRDGLLPFVKLIDGF-DA--QYEVIAN-DDTVFTFLTNKDAPKYKIIRVDLKEPN-----DWFEVIPEAE 348 (732)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~l~~~~-~~--~~~~~s~-dg~~l~~~s~~~~~~~~l~~~d~~~~~-----~~~~l~~~~~ 348 (732)
..+.... +. ..+.+++ || +.+|.++. +.|+.+|+.+.. .|..+.....
T Consensus 185 ------------------~~vf~~~~~~v~~rP~~~~~dg-~~~~vs~e----G~V~~id~~~~~~~~~~~~~~~~~~~~ 241 (352)
T TIGR02658 185 ------------------TEVFHPEDEYLINHPAYSNKSG-RLVWPTYT----GKIFQIDLSSGDAKFLPAIEAFTEAEK 241 (352)
T ss_pred ------------------eeeecCCccccccCCceEcCCC-cEEEEecC----CeEEEEecCCCcceecceeeecccccc
Confidence 0111110 00 0112455 55 55666765 479999975542 2332221110
Q ss_pred --C---CceeEEEEecC-CEEEEEEec-------CCeeEEEEEeCCCCceeeecccccceeeEeecccCCcEEEEEEecC
Q 004766 349 --R---DVLESATAVNL-NQMIVSYLS-------DVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSF 415 (732)
Q Consensus 349 --~---~~l~~~~~~~~-~~l~~~~~~-------~g~~~l~~~d~~~g~~~~~l~~~~g~v~~~~~s~d~~~l~~~~ss~ 415 (732)
+ .-.+.+.+.++ +++|+.... ++-.+|+++|.++++.+.+|.... .+..+.+++|++.+++..+.
T Consensus 242 ~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~-~~~~iavS~Dgkp~lyvtn~- 319 (352)
T TIGR02658 242 ADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGH-EIDSINVSQDAKPLLYALST- 319 (352)
T ss_pred ccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCC-ceeeEEECCCCCeEEEEeCC-
Confidence 1 12334777764 667775432 222589999999998888887654 34477889999833333332
Q ss_pred CCCceEEEEECCCCC
Q 004766 416 LIPGIVYQCNLKTET 430 (732)
Q Consensus 416 ~~p~~~y~~d~~~~~ 430 (732)
....+..+|.++++
T Consensus 320 -~s~~VsViD~~t~k 333 (352)
T TIGR02658 320 -GDKTLYIFDAETGK 333 (352)
T ss_pred -CCCcEEEEECcCCe
Confidence 24568899988875
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG2624 consensus Triglyceride lipase-cholesterol esterase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.9e-07 Score=96.43 Aligned_cols=144 Identities=19% Similarity=0.223 Sum_probs=106.5
Q ss_pred CCCCceEEEEEEEccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcC---hhHHHHHHhcCcEEEEEcccC
Q 004766 445 DRSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFS---VSRTILMRHLGAVFCIANIRG 521 (732)
Q Consensus 445 ~~~~~~~~~~~~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~---~~~~~~l~~~G~~v~~~~~rG 521 (732)
....|.+|...+++.|| . |-.+--.|... +++|+|++.||-..++..+.-+ .....+|+++||-|-.-|.||
T Consensus 42 ~~~gy~~E~h~V~T~Dg-Y-iL~lhRIp~~~---~~rp~Vll~HGLl~sS~~Wv~n~p~~sLaf~LadaGYDVWLgN~RG 116 (403)
T KOG2624|consen 42 EKYGYPVEEHEVTTEDG-Y-ILTLHRIPRGK---KKRPVVLLQHGLLASSSSWVLNGPEQSLAFLLADAGYDVWLGNNRG 116 (403)
T ss_pred HHcCCceEEEEEEccCC-e-EEEEeeecCCC---CCCCcEEEeeccccccccceecCccccHHHHHHHcCCceeeecCcC
Confidence 34567889999999999 7 44444445442 7899999999998876654433 234667778999999999999
Q ss_pred CCCCchhHHhcccc-c-------CCccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCC---eeeEEE
Q 004766 522 GGEYGEEWHKGGAL-A-------KKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPD---LFGCAL 590 (732)
Q Consensus 522 ~g~~g~~~~~~~~~-~-------~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~---~f~a~v 590 (732)
..|.+.--..... . +..-...|+-|.|+|+.+. +..+++..+|||.|+.....++.++|+ .++..+
T Consensus 117 -n~ySr~h~~l~~~~~~~FW~FS~~Em~~yDLPA~IdyIL~~--T~~~kl~yvGHSQGtt~~fv~lS~~p~~~~kI~~~~ 193 (403)
T KOG2624|consen 117 -NTYSRKHKKLSPSSDKEFWDFSWHEMGTYDLPAMIDYILEK--TGQEKLHYVGHSQGTTTFFVMLSERPEYNKKIKSFI 193 (403)
T ss_pred -cccchhhcccCCcCCcceeecchhhhhhcCHHHHHHHHHHh--ccccceEEEEEEccchhheehhcccchhhhhhheee
Confidence 6676653322211 1 1122357999999999876 567899999999999999999998877 567777
Q ss_pred EcCCcc
Q 004766 591 AHVGVM 596 (732)
Q Consensus 591 ~~~p~~ 596 (732)
+.+|++
T Consensus 194 aLAP~~ 199 (403)
T KOG2624|consen 194 ALAPAA 199 (403)
T ss_pred eecchh
Confidence 777766
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.2e-06 Score=94.69 Aligned_cols=196 Identities=15% Similarity=0.167 Sum_probs=127.5
Q ss_pred eeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEE
Q 004766 180 FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVM 259 (732)
Q Consensus 180 ~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~ 259 (732)
+.+.+|+||.+.|+-++ ....+.+|.+.|. ..+++|.+...|.| .+.|+|-|-|.+-
T Consensus 454 Vyg~sFsPd~rfLlScS-------------------ED~svRLWsl~t~--s~~V~y~GH~~PVw--dV~F~P~GyYFat 510 (707)
T KOG0263|consen 454 VYGCSFSPDRRFLLSCS-------------------EDSSVRLWSLDTW--SCLVIYKGHLAPVW--DVQFAPRGYYFAT 510 (707)
T ss_pred eeeeeecccccceeecc-------------------CCcceeeeecccc--eeEEEecCCCccee--eEEecCCceEEEe
Confidence 45778999998887654 3345788888875 34567776555544 5778999988765
Q ss_pred EEecCCcceEEEEEEeCCCCCCCcccccccCCCCCcEEeeecc-cceEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCC
Q 004766 260 CIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGF-DAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPN 338 (732)
Q Consensus 260 ~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~ 338 (732)
.+.+. +.++|..|-.. |.+-..... +.+...|.|+...++ +. .....+-.+|+.++.
T Consensus 511 as~D~---tArLWs~d~~~---------------PlRifaghlsDV~cv~FHPNs~Y~a--TG--SsD~tVRlWDv~~G~ 568 (707)
T KOG0263|consen 511 ASHDQ---TARLWSTDHNK---------------PLRIFAGHLSDVDCVSFHPNSNYVA--TG--SSDRTVRLWDVSTGN 568 (707)
T ss_pred cCCCc---eeeeeecccCC---------------chhhhcccccccceEEECCcccccc--cC--CCCceEEEEEcCCCc
Confidence 54332 46788776532 122222221 222234778665433 33 224457788988887
Q ss_pred CceEeccCCCCCceeEEEEecCCEEEEEEecCCeeEEEEEeCCCCceeeecccccceeeEeecccCCcEEEEEEecCCCC
Q 004766 339 DWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIP 418 (732)
Q Consensus 339 ~~~~l~~~~~~~~l~~~~~~~~~~l~~~~~~~g~~~l~~~d~~~g~~~~~l~~~~g~v~~~~~s~d~~~l~~~~ss~~~p 418 (732)
..+....| ...+..+.+++.++.+++..+++ .|.+||+.+|+.+..+..+.+.+.+++++.||+.|+. - +..
T Consensus 569 ~VRiF~GH--~~~V~al~~Sp~Gr~LaSg~ed~--~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLas-g-g~D-- 640 (707)
T KOG0263|consen 569 SVRIFTGH--KGPVTALAFSPCGRYLASGDEDG--LIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLAS-G-GAD-- 640 (707)
T ss_pred EEEEecCC--CCceEEEEEcCCCceEeecccCC--cEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEe-c-CCC--
Confidence 44444444 47889999999777777777774 7899999988876666656788889999999985543 2 323
Q ss_pred ceEEEEECCC
Q 004766 419 GIVYQCNLKT 428 (732)
Q Consensus 419 ~~~y~~d~~~ 428 (732)
.++-.||+..
T Consensus 641 nsV~lWD~~~ 650 (707)
T KOG0263|consen 641 NSVRLWDLTK 650 (707)
T ss_pred CeEEEEEchh
Confidence 3455556543
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.70 E-value=8e-06 Score=76.74 Aligned_cols=221 Identities=16% Similarity=0.090 Sum_probs=136.7
Q ss_pred EEEEEEECCCCceecc-cccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCCcccEEEEEECCCCCCCCeEEE
Q 004766 158 ATIKLMRIEDQIVEAD-ALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCW 236 (732)
Q Consensus 158 ~~i~v~dl~~g~~~~~-~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~ 236 (732)
.+|++|.+.||..... .-.......+..+||++.|+... ...|.++++.+.....+.-|
T Consensus 20 hTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~--------------------~qhvRlyD~~S~np~Pv~t~ 79 (311)
T KOG0315|consen 20 HTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAG--------------------NQHVRLYDLNSNNPNPVATF 79 (311)
T ss_pred ceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhcc--------------------CCeeEEEEccCCCCCceeEE
Confidence 7999999999985321 11112346788999999888642 34588999988876656666
Q ss_pred ecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCCCCcEEeeecccceEEEEEecCCeE
Q 004766 237 KDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVF 316 (732)
Q Consensus 237 ~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dg~~l 316 (732)
+... ..+..+.|--||++++-.+.++. +.++|+....+ -+.+.........+..|+...|
T Consensus 80 e~h~--kNVtaVgF~~dgrWMyTgseDgt-----~kIWdlR~~~~-------------qR~~~~~spVn~vvlhpnQteL 139 (311)
T KOG0315|consen 80 EGHT--KNVTAVGFQCDGRWMYTGSEDGT-----VKIWDLRSLSC-------------QRNYQHNSPVNTVVLHPNQTEL 139 (311)
T ss_pred eccC--CceEEEEEeecCeEEEecCCCce-----EEEEeccCccc-------------chhccCCCCcceEEecCCcceE
Confidence 6543 34568889999999875544332 55567665221 1111111111112355665565
Q ss_pred EEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecCCEEEEEEecCCeeEEEEEeCCCCceeeec------c
Q 004766 317 TFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQL------P 390 (732)
Q Consensus 317 ~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~~l~~~~~~~g~~~l~~~d~~~g~~~~~l------~ 390 (732)
+. .+. .+.|..+|+.....-.+|+|+. +..++++.+.+++..++..... +..|+|++-+++....| .
T Consensus 140 is-~dq---sg~irvWDl~~~~c~~~liPe~-~~~i~sl~v~~dgsml~a~nnk--G~cyvW~l~~~~~~s~l~P~~k~~ 212 (311)
T KOG0315|consen 140 IS-GDQ---SGNIRVWDLGENSCTHELIPED-DTSIQSLTVMPDGSMLAAANNK--GNCYVWRLLNHQTASELEPVHKFQ 212 (311)
T ss_pred Ee-ecC---CCcEEEEEccCCccccccCCCC-CcceeeEEEcCCCcEEEEecCC--ccEEEEEccCCCccccceEhhhee
Confidence 53 332 3468889998765456788876 5889999988876666666554 47899998644322222 2
Q ss_pred cccceeeEeecccCCcEEEEEEecCCCCceEEEEECCCC
Q 004766 391 IEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTE 429 (732)
Q Consensus 391 ~~~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~ 429 (732)
...+.+..--+|||+++|+ +.++. .++++++.++-
T Consensus 213 ah~~~il~C~lSPd~k~la-t~ssd---ktv~iwn~~~~ 247 (311)
T KOG0315|consen 213 AHNGHILRCLLSPDVKYLA-TCSSD---KTVKIWNTDDF 247 (311)
T ss_pred cccceEEEEEECCCCcEEE-eecCC---ceEEEEecCCc
Confidence 2345554556789998665 33442 35777776543
|
|
| >COG4757 Predicted alpha/beta hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.69 E-value=2e-07 Score=86.79 Aligned_cols=227 Identities=17% Similarity=0.095 Sum_probs=129.7
Q ss_pred EEEEccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcc
Q 004766 454 VFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGG 533 (732)
Q Consensus 454 ~~~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~ 533 (732)
+.++.+|| ..+++.++.. + ++.+-.+.+-|+++.. ..|-..++.+++++||.|+..|+||.|+.-..-....
T Consensus 8 ~~l~~~DG-~~l~~~~~pA-~----~~~~g~~~va~a~Gv~--~~fYRrfA~~a~~~Gf~Vlt~dyRG~g~S~p~~~~~~ 79 (281)
T COG4757 8 AHLPAPDG-YSLPGQRFPA-D----GKASGRLVVAGATGVG--QYFYRRFAAAAAKAGFEVLTFDYRGIGQSRPASLSGS 79 (281)
T ss_pred cccccCCC-ccCccccccC-C----CCCCCcEEecccCCcc--hhHhHHHHHHhhccCceEEEEecccccCCCccccccC
Confidence 45677899 9999987643 2 3455556666777763 3555567788888999999999999987533221111
Q ss_pred cccCCccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCC--ccccccc-------ccC
Q 004766 534 ALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVG--VMDMLRY-------HKF 604 (732)
Q Consensus 534 ~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p--~~d~~~~-------~~~ 604 (732)
......-...||.++++++.+.- -...+..+|||+||.+.+.+.. +|..-.++|.+++ +.-++.. ..+
T Consensus 80 ~~~~~DwA~~D~~aal~~~~~~~--~~~P~y~vgHS~GGqa~gL~~~-~~k~~a~~vfG~gagwsg~m~~~~~l~~~~l~ 156 (281)
T COG4757 80 QWRYLDWARLDFPAALAALKKAL--PGHPLYFVGHSFGGQALGLLGQ-HPKYAAFAVFGSGAGWSGWMGLRERLGAVLLW 156 (281)
T ss_pred ccchhhhhhcchHHHHHHHHhhC--CCCceEEeeccccceeeccccc-CcccceeeEeccccccccchhhhhcccceeec
Confidence 11112234579999999998742 2236889999999988776654 5643333344332 1111110 000
Q ss_pred C----CCCcccc-----ccCCC-CCH----HHHHHHHhcCcccCCCCCCCCC--CCCCCCCCeEEEEeeCCCCCCCchHH
Q 004766 605 T----IGHAWVS-----DFGCS-EEE----EEFYWLIKYSPLHNVRRPWEQN--PDKPFQYPSTLLLTADHDDRVVPLHS 668 (732)
Q Consensus 605 ~----~~~~~~~-----~~g~p-~~~----~~~~~~~~~sp~~~~~~~~~~~--~~~~~~~~p~Li~~g~~D~~v~~~~~ 668 (732)
. .-..|.. -.|.+ +.| .++...-...-+...+.. ..+ +.-..+.+|++.+...+|+-+|+...
T Consensus 157 ~lv~p~lt~w~g~~p~~l~G~G~d~p~~v~RdW~RwcR~p~y~fddp~-~~~~~q~yaaVrtPi~~~~~~DD~w~P~As~ 235 (281)
T COG4757 157 NLVGPPLTFWKGYMPKDLLGLGSDLPGTVMRDWARWCRHPRYYFDDPA-MRNYRQVYAAVRTPITFSRALDDPWAPPASR 235 (281)
T ss_pred cccccchhhccccCcHhhcCCCccCcchHHHHHHHHhcCccccccChh-HhHHHHHHHHhcCceeeeccCCCCcCCHHHH
Confidence 0 0011211 11222 111 111111111111111100 000 00002678999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCEEEEEeCCC----CCCC
Q 004766 669 LKLLATMQYVLCTSLENSPQTNPIIGRIERKA----GHGV 704 (732)
Q Consensus 669 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----gH~~ 704 (732)
.+|+....+ .|++++.++.. ||..
T Consensus 236 d~f~~~y~n------------Apl~~~~~~~~~~~lGH~g 263 (281)
T COG4757 236 DAFASFYRN------------APLEMRDLPRAEGPLGHMG 263 (281)
T ss_pred HHHHHhhhc------------CcccceecCcccCcccchh
Confidence 999888774 47777777665 7864
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.68 E-value=0.00013 Score=71.35 Aligned_cols=243 Identities=14% Similarity=0.078 Sum_probs=144.6
Q ss_pred EEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceeccc-ccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCc
Q 004766 133 ALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADA-LSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTE 211 (732)
Q Consensus 133 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~-~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~ 211 (732)
.+..+.+|+||.+|+-+. +.-.|+++|..+|..+... ........+.|......+.+++..
T Consensus 16 ~i~sl~fs~~G~~litss-----~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk------------- 77 (311)
T KOG1446|consen 16 KINSLDFSDDGLLLITSS-----EDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTK------------- 77 (311)
T ss_pred ceeEEEecCCCCEEEEec-----CCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCC-------------
Confidence 466899999999988653 2237999999999865321 111112456777777788887532
Q ss_pred ccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCC
Q 004766 212 TDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDG 291 (732)
Q Consensus 212 ~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 291 (732)
....|.+..+.+.. .|---+.+...+.++..||-+...+-.+.+ ..|++||+....+
T Consensus 78 ----~d~tIryLsl~dNk----ylRYF~GH~~~V~sL~~sP~~d~FlS~S~D-----~tvrLWDlR~~~c---------- 134 (311)
T KOG1446|consen 78 ----EDDTIRYLSLHDNK----YLRYFPGHKKRVNSLSVSPKDDTFLSSSLD-----KTVRLWDLRVKKC---------- 134 (311)
T ss_pred ----CCCceEEEEeecCc----eEEEcCCCCceEEEEEecCCCCeEEecccC-----CeEEeeEecCCCC----------
Confidence 23468888887643 222223344566789999988654433322 3478888875322
Q ss_pred CCCcEEeeecccceEEEEEecCCeEEEEeCCCCCCceEEEEeCCCC--CCceEeccC-CCCCceeEEEEecCCEEEEEEe
Q 004766 292 LLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEP--NDWFEVIPE-AERDVLESATAVNLNQMIVSYL 368 (732)
Q Consensus 292 ~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~--~~~~~l~~~-~~~~~l~~~~~~~~~~l~~~~~ 368 (732)
.- +..-.......+.|.|-.+++..+ .. .|-.+|+..- ...+..... ........+.++++++.++...
T Consensus 135 ---qg-~l~~~~~pi~AfDp~GLifA~~~~--~~--~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT 206 (311)
T KOG1446|consen 135 ---QG-LLNLSGRPIAAFDPEGLIFALANG--SE--LIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLST 206 (311)
T ss_pred ---ce-EEecCCCcceeECCCCcEEEEecC--CC--eEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEe
Confidence 11 111122234567887754443332 21 4666676542 223333322 3335567888998766666655
Q ss_pred cCCeeEEEEEeCCCCceeeecccc--cc-eeeEeecccCCcEEEEEEecCCCCceEEEEECCCCC
Q 004766 369 SDVKYVLQIRDLKNGSLLHQLPIE--IG-SVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 430 (732)
Q Consensus 369 ~~g~~~l~~~d~~~g~~~~~l~~~--~g-~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~~ 430 (732)
.+ +.++++|.=+|..+..+... .+ ..-...++||++-++ +.++ -+++..|++++++
T Consensus 207 ~~--s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl-~gs~---dg~i~vw~~~tg~ 265 (311)
T KOG1446|consen 207 NA--SFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVL-SGSD---DGTIHVWNLETGK 265 (311)
T ss_pred CC--CcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEE-EecC---CCcEEEEEcCCCc
Confidence 55 47888887778876666553 12 112456789997544 3322 3679999999985
|
|
| >PF00135 COesterase: Carboxylesterase family The prints entry is specific to acetylcholinesterase; InterPro: IPR002018 Higher eukaryotes have many distinct esterases | Back alignment and domain information |
|---|
Probab=98.68 E-value=4.6e-08 Score=110.77 Aligned_cols=218 Identities=15% Similarity=0.140 Sum_probs=117.7
Q ss_pred EEEEEEEcCCCCCCCCccEEEEEcCCCCccCC---CCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhccccc--CCc
Q 004766 465 IPMFIVSKKNIKLDGSHPCLLYGYGGFNISVT---PSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALA--KKQ 539 (732)
Q Consensus 465 i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~---~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~--~~~ 539 (732)
+..-|+.|+......+.|++|++|||.-.... +.+.. ..++.+++++||.+|||-|- +| |....... .+-
T Consensus 109 L~LnI~~P~~~~~~~~lPV~v~ihGG~f~~G~~~~~~~~~--~~~~~~~~vivVt~nYRlg~-~G--fl~~~~~~~~~gN 183 (535)
T PF00135_consen 109 LYLNIYTPSNASSNSKLPVMVWIHGGGFMFGSGSFPPYDG--ASLAASKDVIVVTINYRLGA-FG--FLSLGDLDAPSGN 183 (535)
T ss_dssp -EEEEEEETSSSSTTSEEEEEEE--STTTSSCTTSGGGHT--HHHHHHHTSEEEEE----HH-HH--H-BSSSTTSHBST
T ss_pred HHHhhhhccccccccccceEEEeecccccCCCcccccccc--cccccCCCEEEEEecccccc-cc--cccccccccCchh
Confidence 66778889886544589999999998433222 22222 34556699999999999531 11 11111111 133
Q ss_pred cHHHHHHHHHHHHHHc---CCCCCCcEEEEecChhHHHHHHHHhh--CCCeeeEEEEcCCccccc-ccccCC--CCCccc
Q 004766 540 NCFDDFISASEYLISA---GYTQSRKLCIEGGSNGGLLVGACINQ--RPDLFGCALAHVGVMDML-RYHKFT--IGHAWV 611 (732)
Q Consensus 540 ~~~~D~~~~~~~l~~~---~~~d~~~i~i~G~S~GG~l~~~~~~~--~p~~f~a~v~~~p~~d~~-~~~~~~--~~~~~~ 611 (732)
..+.|.+.|++|++++ ---||++|-|+|+|+||..+...+.. ...+|+.+|+.+|..-.. ...... ......
T Consensus 184 ~Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~l~sp~~~~LF~raI~~SGs~~~~~~~~~~~~~~~~~la 263 (535)
T PF00135_consen 184 YGLLDQRLALKWVQDNIAAFGGDPDNVTLFGQSAGAASVSLLLLSPSSKGLFHRAILQSGSALSPWATSENPEQQAQKLA 263 (535)
T ss_dssp HHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHGGGGTTSBSEEEEES--TTSTTSSBSHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHhhhhhcccCCcceeeeeecccccccceeeeccccccccccccccccccccccccccccchhhhhhh
Confidence 4689999999999887 23599999999999999999988775 235999999999843211 111100 001122
Q ss_pred cccCCCCC--HHHHHHHHhcCcccCCCCCCCCCCCCCCC---CCeEEEEeeCCCCCCCchHHHHHHHHHHHhhcCCCCCC
Q 004766 612 SDFGCSEE--EEEFYWLIKYSPLHNVRRPWEQNPDKPFQ---YPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENS 686 (732)
Q Consensus 612 ~~~g~p~~--~~~~~~~~~~sp~~~~~~~~~~~~~~~~~---~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~ 686 (732)
...|++.. .+..+.|++.++-.-++... ++...... ..|+ + |..+-+..+..+.+.=+
T Consensus 264 ~~lgc~~~~~~~~l~cLR~~~~~~L~~a~~-~~~~~~~~~~~f~Pv--v----Dg~~lp~~p~~~~~~g~---------- 326 (535)
T PF00135_consen 264 KALGCDDSDSSDILECLRSLPAEELLAAQN-KLWPESGFFPPFGPV--V----DGDFLPDSPSELLKSGR---------- 326 (535)
T ss_dssp HHTTSTTSSHHHHHHHHHHS-HHHHHHHHH-CCSTTSSSSSSSSBB--E----BSSSSSS-HHHHHHTTT----------
T ss_pred hhhccccccccchhhhhhhhhccchhhhhh-cccccccccccCCce--e----cccccccCccccccccc----------
Confidence 34566632 35566677655432111100 00000001 1233 1 23355566655443311
Q ss_pred CCCCCEEEEEeCCCCCCC
Q 004766 687 PQTNPIIGRIERKAGHGV 704 (732)
Q Consensus 687 ~~~~~~~~~~~~~~gH~~ 704 (732)
...+|+.+-...++|..+
T Consensus 327 ~~~vP~liG~t~~Eg~~~ 344 (535)
T PF00135_consen 327 FNKVPLLIGSTSDEGSLF 344 (535)
T ss_dssp STTSEEEEEEETBTTHHH
T ss_pred cceeeeecccccccchhh
Confidence 127788888888888754
|
Among the different types are those which act on carboxylic esters (3.1.1 from EC). Carboxyl-esterases have been classified into three categories (A, B and C) on the basis of differential patterns of inhibition by organophosphates. The sequence of a number of type-B carboxylesterases indicates [, , ] that the majority are evolutionary related. As is the case for lipases and serine proteases, the catalytic apparatus of esterases involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.; PDB: 3B3Q_A 1CLE_B 1GQS_A 2VJD_A 1HBJ_A 2C5G_A 1U65_A 2WG1_A 1FSS_A 3M3D_A .... |
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.4e-06 Score=95.76 Aligned_cols=241 Identities=13% Similarity=0.055 Sum_probs=131.6
Q ss_pred CCEEEEeEEECCCCcEEEEEEeccCCceEEEEEEECCC-----------Ccee--------cccccceeeeeEEEEeCCc
Q 004766 130 GTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIED-----------QIVE--------ADALSWFKFSSIAWTHDSK 190 (732)
Q Consensus 130 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~-----------g~~~--------~~~~~~~~~~~~~WspDg~ 190 (732)
+...+.-++|||||++||.. +|...|.||+.+. |... .......++..+.||||++
T Consensus 68 h~~sv~CVR~S~dG~~lAsG-----SDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~ 142 (942)
T KOG0973|consen 68 HDGSVNCVRFSPDGSYLASG-----SDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDS 142 (942)
T ss_pred ccCceeEEEECCCCCeEeec-----cCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCcc
Confidence 34567889999999999965 4446677777662 1100 0111222357899999999
Q ss_pred EEEEEEecCCCCCCCCCCCCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEE
Q 004766 191 GFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNK 270 (732)
Q Consensus 191 ~l~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~ 270 (732)
.|+-.+.++ .|..|+.-+- +.+.++.. +...+-++.|.|-|+|++-.+.++.
T Consensus 143 ~lvS~s~Dn-------------------sViiwn~~tF--~~~~vl~~--H~s~VKGvs~DP~Gky~ASqsdDrt----- 194 (942)
T KOG0973|consen 143 LLVSVSLDN-------------------SVIIWNAKTF--ELLKVLRG--HQSLVKGVSWDPIGKYFASQSDDRT----- 194 (942)
T ss_pred EEEEecccc-------------------eEEEEccccc--eeeeeeec--ccccccceEECCccCeeeeecCCce-----
Confidence 888775443 5777776665 23334433 3445668999999999987765443
Q ss_pred EEEEeCCCCCCCcccccccCCCCCcEEeeecccc----eE---EEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEe
Q 004766 271 VYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDA----QY---EVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEV 343 (732)
Q Consensus 271 l~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~---~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l 343 (732)
|.++.+.+- + ....++..+.. .+ ..|||||++|.....-+++...+-.++-.+=+.-..|
T Consensus 195 ikvwrt~dw--~-----------i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~L 261 (942)
T KOG0973|consen 195 LKVWRTSDW--G-----------IEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDL 261 (942)
T ss_pred EEEEEcccc--e-----------eeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeee
Confidence 444443220 0 01112222221 01 2499999988754433444444445543221111356
Q ss_pred ccCCCCCceeEEEEec----C-CE------------EEEEEecCCeeEEEEEeCCCCceeeeccc----ccceeeEeecc
Q 004766 344 IPEAERDVLESATAVN----L-NQ------------MIVSYLSDVKYVLQIRDLKNGSLLHQLPI----EIGSVNAISAR 402 (732)
Q Consensus 344 ~~~~~~~~l~~~~~~~----~-~~------------l~~~~~~~g~~~l~~~d~~~g~~~~~l~~----~~g~v~~~~~s 402 (732)
+.|.. .++-+.+.+ + .. +++....| ..|.+|... .. +.+-. -.-+|..++++
T Consensus 262 vGH~~--p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqD--rSlSVW~T~--~~-RPl~vi~~lf~~SI~DmsWs 334 (942)
T KOG0973|consen 262 VGHSA--PVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQD--RSLSVWNTA--LP-RPLFVIHNLFNKSIVDMSWS 334 (942)
T ss_pred ecCCC--ceEEEEeChHHhccccccCCccCCCcceEEEEEecCC--ccEEEEecC--CC-CchhhhhhhhcCceeeeeEc
Confidence 66653 333333221 0 11 44555555 357778753 22 33321 14567788899
Q ss_pred cCCcEEEEEEecCCCCceEEEEECC
Q 004766 403 REDSVVFISFTSFLIPGIVYQCNLK 427 (732)
Q Consensus 403 ~d~~~l~~~~ss~~~p~~~y~~d~~ 427 (732)
+||-.|+...-. ++++.+..+
T Consensus 335 pdG~~LfacS~D----GtV~~i~Fe 355 (942)
T KOG0973|consen 335 PDGFSLFACSLD----GTVALIHFE 355 (942)
T ss_pred CCCCeEEEEecC----CeEEEEEcc
Confidence 998765543222 356555543
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.65 E-value=3.9e-05 Score=83.66 Aligned_cols=257 Identities=17% Similarity=0.135 Sum_probs=151.2
Q ss_pred EeCCEEEEEEEcCCCCeeEEEEEeCCCCCceEEeCCCCcCCCCCEEEEeEEECCCCcEEEEEEeccCCc------eEEEE
Q 004766 88 KRGNKYFYFHNTGLQPQSVLYVQDSLDAKAKVLLDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSGSD------WATIK 161 (732)
Q Consensus 88 ~~g~~~~~~~~~~~~~~~~l~~r~~~~~~~~~l~D~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e------~~~i~ 161 (732)
++|.++.|....++.+...|++++...+ +.+-|. +. ......+.|++||+.+.|+....... ..+|+
T Consensus 133 pdg~~la~~~s~~G~e~~~l~v~Dl~tg--~~l~d~--i~---~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~ 205 (414)
T PF02897_consen 133 PDGKRLAYSLSDGGSEWYTLRVFDLETG--KFLPDG--IE---NPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVY 205 (414)
T ss_dssp TTSSEEEEEEEETTSSEEEEEEEETTTT--EEEEEE--EE---EEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEE
T ss_pred CCCCEEEEEecCCCCceEEEEEEECCCC--cCcCCc--cc---ccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEE
Confidence 3677888887777888888888887655 333222 11 01112489999999999998666544 68999
Q ss_pred EEECCCCce----e-cccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCCcccEEEEEECCCC---CCCCe
Q 004766 162 LMRIEDQIV----E-ADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTK---QSEDI 233 (732)
Q Consensus 162 v~dl~~g~~----~-~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~---~~~~~ 233 (732)
.+.+.++.. + .+......+.++.+|+|++.|++.+... .. ...+|+.++..+ ...-.
T Consensus 206 ~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~--------------~~-~s~v~~~d~~~~~~~~~~~~ 270 (414)
T PF02897_consen 206 RHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSG--------------TS-ESEVYLLDLDDGGSPDAKPK 270 (414)
T ss_dssp EEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESS--------------SS-EEEEEEEECCCTTTSS-SEE
T ss_pred EEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEcc--------------cc-CCeEEEEeccccCCCcCCcE
Confidence 999987642 1 1211111135788999999999876543 11 368999999875 22333
Q ss_pred EEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCCCCcE-Eeeeccc-ceEEEEEe
Q 004766 234 LCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFV-KLIDGFD-AQYEVIAN 311 (732)
Q Consensus 234 ~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~-~l~~~~~-~~~~~~s~ 311 (732)
++....+.. ...+.. .|..+++.++.+. ....|+.++++... ...+. .+..... .....++.
T Consensus 271 ~l~~~~~~~--~~~v~~--~~~~~yi~Tn~~a-~~~~l~~~~l~~~~-----------~~~~~~~l~~~~~~~~l~~~~~ 334 (414)
T PF02897_consen 271 LLSPREDGV--EYYVDH--HGDRLYILTNDDA-PNGRLVAVDLADPS-----------PAEWWTVLIPEDEDVSLEDVSL 334 (414)
T ss_dssp EEEESSSS---EEEEEE--ETTEEEEEE-TT--TT-EEEEEETTSTS-----------GGGEEEEEE--SSSEEEEEEEE
T ss_pred EEeCCCCce--EEEEEc--cCCEEEEeeCCCC-CCcEEEEecccccc-----------cccceeEEcCCCCceeEEEEEE
Confidence 444433222 222222 2666666665433 46789999988732 11233 3333322 23445667
Q ss_pred cCCeEEEEeCCCCCCceEEEEeCC-CCCCceEeccCCCCCceeEEEEec-CCEEEEEEecCC-eeEEEEEeCCCCce
Q 004766 312 DDTVFTFLTNKDAPKYKIIRVDLK-EPNDWFEVIPEAERDVLESATAVN-LNQMIVSYLSDV-KYVLQIRDLKNGSL 385 (732)
Q Consensus 312 dg~~l~~~s~~~~~~~~l~~~d~~-~~~~~~~l~~~~~~~~l~~~~~~~-~~~l~~~~~~~g-~~~l~~~d~~~g~~ 385 (732)
.+++|++...+++ ..+|.++++. +.. ...+.... ...+.++.... .+.+++....-. .+.++.+|+++|+.
T Consensus 335 ~~~~Lvl~~~~~~-~~~l~v~~~~~~~~-~~~~~~p~-~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~ 408 (414)
T PF02897_consen 335 FKDYLVLSYRENG-SSRLRVYDLDDGKE-SREIPLPE-AGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGEL 408 (414)
T ss_dssp ETTEEEEEEEETT-EEEEEEEETT-TEE-EEEEESSS-SSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCE
T ss_pred ECCEEEEEEEECC-ccEEEEEECCCCcE-EeeecCCc-ceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCE
Confidence 7889888777655 6789999998 433 22222222 23344444332 256776666554 46999999998875
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.4e-05 Score=88.45 Aligned_cols=207 Identities=13% Similarity=-0.017 Sum_probs=114.4
Q ss_pred CCEEEEeEEECCC-CcEEEEEEeccCCceEEEEEEECCCCce-ec--------ccccceeeeeEEEEeCCcEEEEEEecC
Q 004766 130 GTAALIKVSVSED-AKYLAYALSYSGSDWATIKLMRIEDQIV-EA--------DALSWFKFSSIAWTHDSKGFFYSRYPA 199 (732)
Q Consensus 130 ~~~~~~~~~~SPD-G~~la~~~~~~G~e~~~i~v~dl~~g~~-~~--------~~~~~~~~~~~~WspDg~~l~y~~~~~ 199 (732)
+...+..++|||+ +++||-. ++..+|+|||+.++.. .. ..........++|+|++..++.+..
T Consensus 73 H~~~V~~lafsP~~~~lLASg-----S~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS-- 145 (568)
T PTZ00420 73 HTSSILDLQFNPCFSEILASG-----SEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSG-- 145 (568)
T ss_pred CCCCEEEEEEcCCCCCEEEEE-----eCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEe--
Confidence 3345789999997 6666643 2335899999986431 10 0111123578999999988765532
Q ss_pred CCCCCCCCCCCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCC
Q 004766 200 PKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSAL 279 (732)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~ 279 (732)
....|.+|++.++.. +..+.. ...+.+++|+|||+.|+....+ ..|.++|+.++
T Consensus 146 ----------------~DgtIrIWDl~tg~~--~~~i~~---~~~V~SlswspdG~lLat~s~D-----~~IrIwD~Rsg 199 (568)
T PTZ00420 146 ----------------FDSFVNIWDIENEKR--AFQINM---PKKLSSLKWNIKGNLLSGTCVG-----KHMHIIDPRKQ 199 (568)
T ss_pred ----------------CCCeEEEEECCCCcE--EEEEec---CCcEEEEEECCCCCEEEEEecC-----CEEEEEECCCC
Confidence 234688999987642 122222 2245689999999988655432 34888898774
Q ss_pred CCCcccccccCCCCCcEEeeecccc--eEE----EEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCC-CCCce
Q 004766 280 PEGLEGFKKRDGLLPFVKLIDGFDA--QYE----VIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEA-ERDVL 352 (732)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~l~~~~~~--~~~----~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~-~~~~l 352 (732)
. ....+...... ... .++++++.|+..+..+.....|.++|+.........+... ....+
T Consensus 200 ~-------------~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L 266 (568)
T PTZ00420 200 E-------------IASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPL 266 (568)
T ss_pred c-------------EEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccce
Confidence 2 11222211111 111 1346777666544333223468888987533122222221 11222
Q ss_pred eEEEEecCCEEEEEEecCCeeEEEEEeCCCCc
Q 004766 353 ESATAVNLNQMIVSYLSDVKYVLQIRDLKNGS 384 (732)
Q Consensus 353 ~~~~~~~~~~l~~~~~~~g~~~l~~~d~~~g~ 384 (732)
..+.-.+++.+|+....| ..|++|++..+.
T Consensus 267 ~p~~D~~tg~l~lsGkGD--~tIr~~e~~~~~ 296 (568)
T PTZ00420 267 IPHYDESTGLIYLIGKGD--GNCRYYQHSLGS 296 (568)
T ss_pred EEeeeCCCCCEEEEEECC--CeEEEEEccCCc
Confidence 222222335677777666 478888886554
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.64 E-value=0.0001 Score=74.07 Aligned_cols=227 Identities=13% Similarity=0.086 Sum_probs=133.2
Q ss_pred eEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecccccceeeeeEEEE-eCCcEEEEEEecCCCCCCCCCCCCcccC
Q 004766 136 KVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWFKFSSIAWT-HDSKGFFYSRYPAPKEGKDMDAGTETDS 214 (732)
Q Consensus 136 ~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~~~~~~~~~~Ws-pDg~~l~y~~~~~~~~~~~~~~~~~~~~ 214 (732)
++.|.+....|.|+ +..+. +|+.++.++++........ ..+++.. +|| .|+++...
T Consensus 4 gp~~d~~~g~l~~~-D~~~~---~i~~~~~~~~~~~~~~~~~--~~G~~~~~~~g-~l~v~~~~---------------- 60 (246)
T PF08450_consen 4 GPVWDPRDGRLYWV-DIPGG---RIYRVDPDTGEVEVIDLPG--PNGMAFDRPDG-RLYVADSG---------------- 60 (246)
T ss_dssp EEEEETTTTEEEEE-ETTTT---EEEEEETTTTEEEEEESSS--EEEEEEECTTS-EEEEEETT----------------
T ss_pred ceEEECCCCEEEEE-EcCCC---EEEEEECCCCeEEEEecCC--CceEEEEccCC-EEEEEEcC----------------
Confidence 68899966666555 44333 7999999998754322222 2566777 564 56665321
Q ss_pred CcccEEEEEECCCCCCCCeEEEecC--C-CCeeEEEeEEecCCcEEEEEEecCCc--ce--EEEEEEeCCCCCCCccccc
Q 004766 215 NLYHEFYYHFLGTKQSEDILCWKDP--E-HPKYIFSGHVTEDGQYLVMCIEENCD--PV--NKVYYCDLSALPEGLEGFK 287 (732)
Q Consensus 215 ~~~~~v~~~~lgt~~~~~~~v~~~~--~-~~~~~~~~~~SpDg~~l~~~~~~~~~--~~--~~l~~~d~~~~~~~~~~~~ 287 (732)
.+.+.+..++..+ .+.+.. . ......+++++|||+ |++....... .. ..+|.++..+ .
T Consensus 61 ----~~~~~d~~~g~~~--~~~~~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~~-~------- 125 (246)
T PF08450_consen 61 ----GIAVVDPDTGKVT--VLADLPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPDG-K------- 125 (246)
T ss_dssp ----CEEEEETTTTEEE--EEEEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETTS-E-------
T ss_pred ----ceEEEecCCCcEE--EEeeccCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCCC-e-------
Confidence 1344476665332 333331 1 233455889999999 5555433221 11 6799998773 2
Q ss_pred ccCCCCCcEEeeecccce-EEEEEecCCeEEEEeCCCCCCceEEEEeCCCCC----CceEeccCCCC-CceeEEEEecCC
Q 004766 288 KRDGLLPFVKLIDGFDAQ-YEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPN----DWFEVIPEAER-DVLESATAVNLN 361 (732)
Q Consensus 288 ~~~~~~~~~~l~~~~~~~-~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~----~~~~l~~~~~~-~~l~~~~~~~~~ 361 (732)
...+..+.... -..|+|||+.||+.... ..+|++++++... ..+.+...... ....++.+..++
T Consensus 126 -------~~~~~~~~~~pNGi~~s~dg~~lyv~ds~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G 195 (246)
T PF08450_consen 126 -------VTVVADGLGFPNGIAFSPDGKTLYVADSF---NGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDG 195 (246)
T ss_dssp -------EEEEEEEESSEEEEEEETTSSEEEEEETT---TTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS
T ss_pred -------EEEEecCcccccceEECCcchheeecccc---cceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCC
Confidence 22333332221 12589999988875432 4579999886432 11223222211 246788888778
Q ss_pred EEEEEEecCCeeEEEEEeCCCCceeeecccccceeeEeec-ccCCcEEEEEEe
Q 004766 362 QMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISA-RREDSVVFISFT 413 (732)
Q Consensus 362 ~l~~~~~~~g~~~l~~~d~~~g~~~~~l~~~~g~v~~~~~-s~d~~~l~~~~s 413 (732)
.|++..... .+|.+++.+ |+.+..|.+|...++.+.+ -++.++|+++.+
T Consensus 196 ~l~va~~~~--~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~~~~~L~vTta 245 (246)
T PF08450_consen 196 NLWVADWGG--GRIVVFDPD-GKLLREIELPVPRPTNCAFGGPDGKTLYVTTA 245 (246)
T ss_dssp -EEEEEETT--TEEEEEETT-SCEEEEEE-SSSSEEEEEEESTTSSEEEEEEB
T ss_pred CEEEEEcCC--CEEEEECCC-ccEEEEEcCCCCCEEEEEEECCCCCEEEEEeC
Confidence 888876644 589999997 9888888888445666665 467788888754
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.63 E-value=0.00019 Score=71.73 Aligned_cols=265 Identities=12% Similarity=0.123 Sum_probs=139.4
Q ss_pred EeEEECCCCcEEEEEEeccCCc-eEEEEEEECCCCcee--c-ccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCC
Q 004766 135 IKVSVSEDAKYLAYALSYSGSD-WATIKLMRIEDQIVE--A-DALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGT 210 (732)
Q Consensus 135 ~~~~~SPDG~~la~~~~~~G~e-~~~i~v~dl~~g~~~--~-~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~ 210 (732)
+.+.|+|++++| |+....|.+ ...-|-+|-.+|+.. . ..+.+.....++.++||+.|+.+....
T Consensus 43 tyl~~~~~~~~L-Y~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~----------- 110 (346)
T COG2706 43 TYLAVNPDQRHL-YVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHS----------- 110 (346)
T ss_pred ceEEECCCCCEE-EEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccC-----------
Confidence 477899999866 555544332 133445555557632 1 112222225688999998777654322
Q ss_pred cccCCcccEEEEEECCCCCCCC---eEEEe-cC--C---CCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCC
Q 004766 211 ETDSNLYHEFYYHFLGTKQSED---ILCWK-DP--E---HPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPE 281 (732)
Q Consensus 211 ~~~~~~~~~v~~~~lgt~~~~~---~~v~~-~~--~---~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~ 281 (732)
..|-+..+.....-. .++.. +. . +..-.....++|||++|+...- + ..++++++++.+..
T Consensus 111 -------g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DL-G---~Dri~~y~~~dg~L 179 (346)
T COG2706 111 -------GSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDL-G---TDRIFLYDLDDGKL 179 (346)
T ss_pred -------ceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeec-C---CceEEEEEcccCcc
Confidence 123333332211100 00110 00 0 0111235678999999976643 2 35688888876431
Q ss_pred CcccccccCCCCCcEEeeecccceEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCC--CceEe--ccCC--CCCceeEE
Q 004766 282 GLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPN--DWFEV--IPEA--ERDVLESA 355 (732)
Q Consensus 282 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~--~~~~l--~~~~--~~~~l~~~ 355 (732)
. ......+..+.......|.|+|+..|+++..+. ...++.++-..++ +.+.+ +|++ .......+
T Consensus 180 ~---------~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~s-tV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaI 249 (346)
T COG2706 180 T---------PADPAEVKPGAGPRHIVFHPNGKYAYLVNELNS-TVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAI 249 (346)
T ss_pred c---------cccccccCCCCCcceEEEcCCCcEEEEEeccCC-EEEEEEEcCCCceEEEeeeeccCccccCCCCceeEE
Confidence 1 111112334555556679999988887776543 4455556554343 11211 2222 12345678
Q ss_pred EEecCCEEEEEEecCCeeEE--EEEeCCCCceeeeccc-c-cce-eeEeecccCCcEEEEEEecCCCCceEEEEECCCCC
Q 004766 356 TAVNLNQMIVSYLSDVKYVL--QIRDLKNGSLLHQLPI-E-IGS-VNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 430 (732)
Q Consensus 356 ~~~~~~~l~~~~~~~g~~~l--~~~d~~~g~~~~~l~~-~-~g~-v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~~ 430 (732)
.+++++++++.+.+.- ..| +.+|.++|+. +.+.. + .|. -..+.++++++.|++.-+. ..--.+|..|..+|.
T Consensus 250 his~dGrFLYasNRg~-dsI~~f~V~~~~g~L-~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~-sd~i~vf~~d~~TG~ 326 (346)
T COG2706 250 HISPDGRFLYASNRGH-DSIAVFSVDPDGGKL-ELVGITPTEGQFPRDFNINPSGRFLIAANQK-SDNITVFERDKETGR 326 (346)
T ss_pred EECCCCCEEEEecCCC-CeEEEEEEcCCCCEE-EEEEEeccCCcCCccceeCCCCCEEEEEccC-CCcEEEEEEcCCCce
Confidence 8888766555555443 344 4455554542 33321 1 232 3456778888866655443 334788999998884
Q ss_pred CceEEEE
Q 004766 431 PEMKIFR 437 (732)
Q Consensus 431 ~~~~~l~ 437 (732)
++++.
T Consensus 327 --L~~~~ 331 (346)
T COG2706 327 --LTLLG 331 (346)
T ss_pred --EEecc
Confidence 65554
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.62 E-value=6.4e-05 Score=81.23 Aligned_cols=238 Identities=15% Similarity=0.144 Sum_probs=144.6
Q ss_pred EEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceec-ccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcc
Q 004766 134 LIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEA-DALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTET 212 (732)
Q Consensus 134 ~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~-~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~ 212 (732)
+...++.|--+.||...+ +| .++++++.+-..+. ..+...+...++|.--|.+|++.+.
T Consensus 268 vtaa~fH~~t~~lvvgFs-sG----~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~--------------- 327 (893)
T KOG0291|consen 268 VTAAAFHKGTNLLVVGFS-SG----EFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCS--------------- 327 (893)
T ss_pred eeeeeccCCceEEEEEec-CC----eeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCC---------------
Confidence 334556665555544332 11 33445554444321 2333334578899888999999742
Q ss_pred cCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCC
Q 004766 213 DSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGL 292 (732)
Q Consensus 213 ~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~ 292 (732)
+-.++.+|...+. ..|+.-..+..-+..+++||||++|+-...+ .+|-+||...+-
T Consensus 328 ---klgQLlVweWqsE----sYVlKQQgH~~~i~~l~YSpDgq~iaTG~eD-----gKVKvWn~~Sgf------------ 383 (893)
T KOG0291|consen 328 ---KLGQLLVWEWQSE----SYVLKQQGHSDRITSLAYSPDGQLIATGAED-----GKVKVWNTQSGF------------ 383 (893)
T ss_pred ---ccceEEEEEeecc----ceeeeccccccceeeEEECCCCcEEEeccCC-----CcEEEEeccCce------------
Confidence 2335655655432 1344332233345688999999999765543 447777876532
Q ss_pred CCcEEeeecccceE-EEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecCCEEEEEEecCC
Q 004766 293 LPFVKLIDGFDAQY-EVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDV 371 (732)
Q Consensus 293 ~~~~~l~~~~~~~~-~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~~l~~~~~~~g 371 (732)
+....+....... ..|+.+|+.++ .+..+ +.+-.+|+....+.++++.+.+ .....++..+.+.+++....+.
T Consensus 384 -C~vTFteHts~Vt~v~f~~~g~~ll-ssSLD---GtVRAwDlkRYrNfRTft~P~p-~QfscvavD~sGelV~AG~~d~ 457 (893)
T KOG0291|consen 384 -CFVTFTEHTSGVTAVQFTARGNVLL-SSSLD---GTVRAWDLKRYRNFRTFTSPEP-IQFSCVAVDPSGELVCAGAQDS 457 (893)
T ss_pred -EEEEeccCCCceEEEEEEecCCEEE-EeecC---CeEEeeeecccceeeeecCCCc-eeeeEEEEcCCCCEEEeeccce
Confidence 2333333222222 23777776555 34333 3688899987777888876653 5566666666567777776664
Q ss_pred eeEEEEEeCCCCceeeecccccceeeEeecccCCcEEEEEEecCCCCceEEEEEC
Q 004766 372 KYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNL 426 (732)
Q Consensus 372 ~~~l~~~d~~~g~~~~~l~~~~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~ 426 (732)
-.|++|++++|+.+..|..+.|.|++++++++++.| ...|+.. ++.+||.
T Consensus 458 -F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~L--aS~SWDk--TVRiW~i 507 (893)
T KOG0291|consen 458 -FEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLL--ASGSWDK--TVRIWDI 507 (893)
T ss_pred -EEEEEEEeecCeeeehhcCCCCcceeeEEccccCeE--Eeccccc--eEEEEEe
Confidence 689999999999877788778999999999999844 3445554 3444443
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.2e-05 Score=76.14 Aligned_cols=230 Identities=12% Similarity=0.072 Sum_probs=134.4
Q ss_pred CEEEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCC
Q 004766 131 TAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGT 210 (732)
Q Consensus 131 ~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~ 210 (732)
.-++....|+|-..-+.++.+ |+ .+|++||+..++...........-.+.|||||.++++...+.
T Consensus 64 ~~svdql~w~~~~~d~~atas--~d--k~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD----------- 128 (313)
T KOG1407|consen 64 TDSVDQLCWDPKHPDLFATAS--GD--KTIRIWDIRSGKCTARIETKGENINITWSPDGEYIAVGNKDD----------- 128 (313)
T ss_pred CcchhhheeCCCCCcceEEec--CC--ceEEEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEecCcc-----------
Confidence 346677888887766655542 33 489999999998664332222235689999999999875433
Q ss_pred cccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccC
Q 004766 211 ETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRD 290 (732)
Q Consensus 211 ~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~ 290 (732)
.|-..+..+-. .+-+++ ...+...+.|.-++...++....++ -+|.-++ .
T Consensus 129 --------~it~id~r~~~----~~~~~~-~~~e~ne~~w~~~nd~Fflt~GlG~---v~ILsyp--s------------ 178 (313)
T KOG1407|consen 129 --------RITFIDARTYK----IVNEEQ-FKFEVNEISWNNSNDLFFLTNGLGC---VEILSYP--S------------ 178 (313)
T ss_pred --------cEEEEEecccc----eeehhc-ccceeeeeeecCCCCEEEEecCCce---EEEEecc--c------------
Confidence 23333332221 111111 1223446778855555444332222 3333332 2
Q ss_pred CCCCcEEeeecccceEE-EEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecCCEEEEEEec
Q 004766 291 GLLPFVKLIDGFDAQYE-VIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLS 369 (732)
Q Consensus 291 ~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~~l~~~~~~ 369 (732)
.+|+..+......=+. .|+|+|++|+.-+. ...+-++|++...+.+ .++.- +..+..++++-+++++++.++
T Consensus 179 -Lkpv~si~AH~snCicI~f~p~GryfA~GsA----DAlvSLWD~~ELiC~R-~isRl-dwpVRTlSFS~dg~~lASaSE 251 (313)
T KOG1407|consen 179 -LKPVQSIKAHPSNCICIEFDPDGRYFATGSA----DALVSLWDVDELICER-CISRL-DWPVRTLSFSHDGRMLASASE 251 (313)
T ss_pred -cccccccccCCcceEEEEECCCCceEeeccc----cceeeccChhHhhhhe-eeccc-cCceEEEEeccCcceeeccCc
Confidence 1123333332211122 38999998886332 3345667776554333 33333 578889999877889988888
Q ss_pred CCeeEEEEEeCCCCceeeecccccceeeEeecccCCcEEEEEEecC
Q 004766 370 DVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSF 415 (732)
Q Consensus 370 ~g~~~l~~~d~~~g~~~~~l~~~~g~v~~~~~s~d~~~l~~~~ss~ 415 (732)
| .-|-+.+.++|..+.+|+- .+....+++.|....|+|..+..
T Consensus 252 D--h~IDIA~vetGd~~~eI~~-~~~t~tVAWHPk~~LLAyA~ddk 294 (313)
T KOG1407|consen 252 D--HFIDIAEVETGDRVWEIPC-EGPTFTVAWHPKRPLLAYACDDK 294 (313)
T ss_pred c--ceEEeEecccCCeEEEeec-cCCceeEEecCCCceeeEEecCC
Confidence 8 4566677788987777763 34444678888887777666553
|
|
| >cd00707 Pancreat_lipase_like Pancreatic lipase-like enzymes | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.5e-07 Score=95.62 Aligned_cols=113 Identities=10% Similarity=0.030 Sum_probs=79.7
Q ss_pred CCccEEEEEcCCCCccCCCCcChhH-HHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCccHHHHHHHHHHHHHHcCC
Q 004766 479 GSHPCLLYGYGGFNISVTPSFSVSR-TILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGY 557 (732)
Q Consensus 479 ~~~P~vv~~hG~~~~~~~~~~~~~~-~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~ 557 (732)
...|++|++||..+.. ...|...+ ..++...++.|+++|+++++... +..+. ..-...-+++...+++|.+...
T Consensus 34 ~~~p~vilIHG~~~~~-~~~~~~~l~~~ll~~~~~nVi~vD~~~~~~~~--y~~a~--~~~~~v~~~la~~l~~L~~~~g 108 (275)
T cd00707 34 PSRPTRFIIHGWTSSG-EESWISDLRKAYLSRGDYNVIVVDWGRGANPN--YPQAV--NNTRVVGAELAKFLDFLVDNTG 108 (275)
T ss_pred CCCCcEEEEcCCCCCC-CCcHHHHHHHHHHhcCCCEEEEEECccccccC--hHHHH--HhHHHHHHHHHHHHHHHHHhcC
Confidence 4578999999976654 22333333 34666468999999999863322 11110 1111223577788888887755
Q ss_pred CCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCcc
Q 004766 558 TQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVM 596 (732)
Q Consensus 558 ~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~ 596 (732)
.+.+++.++|||+||.+++.++.+.|++++.+++..|..
T Consensus 109 ~~~~~i~lIGhSlGa~vAg~~a~~~~~~v~~iv~LDPa~ 147 (275)
T cd00707 109 LSLENVHLIGHSLGAHVAGFAGKRLNGKLGRITGLDPAG 147 (275)
T ss_pred CChHHEEEEEecHHHHHHHHHHHHhcCccceeEEecCCc
Confidence 677899999999999999999999999999998876653
|
Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site. |
| >KOG2984 consensus Predicted hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.1e-07 Score=86.23 Aligned_cols=218 Identities=13% Similarity=0.037 Sum_probs=121.9
Q ss_pred EEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCccHHHHHHHHHHHHHHcCCCCCCc
Q 004766 483 CLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSRK 562 (732)
Q Consensus 483 ~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~ 562 (732)
.|+.+-|..|+. ...|.+.+.++....-+.++..|.||-|..-..-. .-.-+.-.+|..+|++-+... +-.+
T Consensus 44 ~iLlipGalGs~-~tDf~pql~~l~k~l~~TivawDPpGYG~SrPP~R----kf~~~ff~~Da~~avdLM~aL---k~~~ 115 (277)
T KOG2984|consen 44 YILLIPGALGSY-KTDFPPQLLSLFKPLQVTIVAWDPPGYGTSRPPER----KFEVQFFMKDAEYAVDLMEAL---KLEP 115 (277)
T ss_pred eeEecccccccc-cccCCHHHHhcCCCCceEEEEECCCCCCCCCCCcc----cchHHHHHHhHHHHHHHHHHh---CCCC
Confidence 566677877754 45777777666654459999999999664211100 111122357888888877664 4478
Q ss_pred EEEEecChhHHHHHHHHhhCCCeeeEEEEcCCc--ccccccccC---CCCCccccccCCC----CCHHHHHH----H-Hh
Q 004766 563 LCIEGGSNGGLLVGACINQRPDLFGCALAHVGV--MDMLRYHKF---TIGHAWVSDFGCS----EEEEEFYW----L-IK 628 (732)
Q Consensus 563 i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~--~d~~~~~~~---~~~~~~~~~~g~p----~~~~~~~~----~-~~ 628 (732)
+.|+|+|-||..++.+++++++...-.|.+.+- ++-...+.+ -....|...--.| -.++.+.. + ..
T Consensus 116 fsvlGWSdGgiTalivAak~~e~v~rmiiwga~ayvn~~~~ma~kgiRdv~kWs~r~R~P~e~~Yg~e~f~~~wa~wvD~ 195 (277)
T KOG2984|consen 116 FSVLGWSDGGITALIVAAKGKEKVNRMIIWGAAAYVNHLGAMAFKGIRDVNKWSARGRQPYEDHYGPETFRTQWAAWVDV 195 (277)
T ss_pred eeEeeecCCCeEEEEeeccChhhhhhheeecccceecchhHHHHhchHHHhhhhhhhcchHHHhcCHHHHHHHHHHHHHH
Confidence 999999999999999999999866554444331 221111111 0111232211111 01121111 1 01
Q ss_pred cCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeCCCCCCCCCch
Q 004766 629 YSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPT 708 (732)
Q Consensus 629 ~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~ 708 (732)
..-++....+.---...+++++|+||+||..|+.|+-.|.--+-..+. -.++.++|.++|.+.-.-
T Consensus 196 v~qf~~~~dG~fCr~~lp~vkcPtli~hG~kDp~~~~~hv~fi~~~~~--------------~a~~~~~peGkHn~hLry 261 (277)
T KOG2984|consen 196 VDQFHSFCDGRFCRLVLPQVKCPTLIMHGGKDPFCGDPHVCFIPVLKS--------------LAKVEIHPEGKHNFHLRY 261 (277)
T ss_pred HHHHhhcCCCchHhhhcccccCCeeEeeCCcCCCCCCCCccchhhhcc--------------cceEEEccCCCcceeeec
Confidence 111111110000000012489999999999999999777543333322 248889999999886432
Q ss_pred HHHHHHHHHHHHHHHH
Q 004766 709 QKMIDEAADRYGFMAK 724 (732)
Q Consensus 709 ~~~~~~~~~~~~fl~~ 724 (732)
. .+....+.+||.+
T Consensus 262 a--~eFnklv~dFl~~ 275 (277)
T KOG2984|consen 262 A--KEFNKLVLDFLKS 275 (277)
T ss_pred h--HHHHHHHHHHHhc
Confidence 2 2344567788764
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=98.61 E-value=2.9e-05 Score=82.26 Aligned_cols=283 Identities=14% Similarity=0.085 Sum_probs=135.6
Q ss_pred EeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccC
Q 004766 135 IKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDS 214 (732)
Q Consensus 135 ~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~ 214 (732)
....+||||+++ |+.+++| .|.++|+.+++.+.....+....++++|+||++++.+..
T Consensus 40 ~~~~~s~Dgr~~-yv~~rdg----~vsviD~~~~~~v~~i~~G~~~~~i~~s~DG~~~~v~n~----------------- 97 (369)
T PF02239_consen 40 AGLKFSPDGRYL-YVANRDG----TVSVIDLATGKVVATIKVGGNPRGIAVSPDGKYVYVANY----------------- 97 (369)
T ss_dssp EEEE-TT-SSEE-EEEETTS----EEEEEETTSSSEEEEEE-SSEEEEEEE--TTTEEEEEEE-----------------
T ss_pred eEEEecCCCCEE-EEEcCCC----eEEEEECCcccEEEEEecCCCcceEEEcCCCCEEEEEec-----------------
Confidence 456799999985 4555544 689999999997654333334478999999999977643
Q ss_pred CcccEEEEEECCCCCCCCeEEEe-cCC--CCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCC
Q 004766 215 NLYHEFYYHFLGTKQSEDILCWK-DPE--HPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDG 291 (732)
Q Consensus 215 ~~~~~v~~~~lgt~~~~~~~v~~-~~~--~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 291 (732)
.+..+..++..+.+.-..+-.. .+. .......+.-||++...++...+ ..++|++|.+...
T Consensus 98 -~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd----~~~I~vVdy~d~~----------- 161 (369)
T PF02239_consen 98 -EPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKD----TGEIWVVDYSDPK----------- 161 (369)
T ss_dssp -ETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETT----TTEEEEEETTTSS-----------
T ss_pred -CCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEcc----CCeEEEEEecccc-----------
Confidence 3346777776654211111000 000 01123456668888866666543 3579999977631
Q ss_pred CCCcEEeeecccceEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCC-C--CceeEEEEecCCEEEEEEe
Q 004766 292 LLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAE-R--DVLESATAVNLNQMIVSYL 368 (732)
Q Consensus 292 ~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~-~--~~l~~~~~~~~~~l~~~~~ 368 (732)
....+.+..+....-..|+|+|++++...+. ..++..+|+++++ ...++.-.. . .....+ ..+....+....
T Consensus 162 ~~~~~~i~~g~~~~D~~~dpdgry~~va~~~---sn~i~viD~~~~k-~v~~i~~g~~p~~~~~~~~-php~~g~vw~~~ 236 (369)
T PF02239_consen 162 NLKVTTIKVGRFPHDGGFDPDGRYFLVAANG---SNKIAVIDTKTGK-LVALIDTGKKPHPGPGANF-PHPGFGPVWATS 236 (369)
T ss_dssp CEEEEEEE--TTEEEEEE-TTSSEEEEEEGG---GTEEEEEETTTTE-EEEEEE-SSSBEETTEEEE-EETTTEEEEEEE
T ss_pred ccceeeecccccccccccCcccceeeecccc---cceeEEEeeccce-EEEEeeccccccccccccc-cCCCcceEEeec
Confidence 0001111111111112589999888775553 2378888887765 222222110 0 111111 112122222222
Q ss_pred cCCee--------EEEEEeCCCCceeeecccccceeeEeecccCCcEEEEEEecCCCCceEEEEECCCCCCceEEEEeec
Q 004766 369 SDVKY--------VLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTETPEMKIFRETI 440 (732)
Q Consensus 369 ~~g~~--------~l~~~d~~~g~~~~~l~~~~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~~~~~~~l~~~~ 440 (732)
..+.. .+.+++..+-+.+++|..+.+.+ .+..+|+++.+++....-..-..+..+|..+.+ ....
T Consensus 237 ~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~gl-Fi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~----~~~~-- 309 (369)
T PF02239_consen 237 GLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGGL-FIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLK----VVKT-- 309 (369)
T ss_dssp BSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTE----EEE---
T ss_pred cccceecccccCCccccchhhcCeEEEEEECCCCcc-eeecCCCCccEEeeccCCCCCceEEEEECcCcc----eeEE--
Confidence 22211 22234544455667777653333 566789999998873222235789999987652 2111
Q ss_pred CCCCCC-CCceEEEEEEEccCCCeeEEEEEEEc
Q 004766 441 IPGFDR-SEFHVHQVFVPSKDGSTKIPMFIVSK 472 (732)
Q Consensus 441 ~~~~~~-~~~~~~~~~~~s~dG~~~i~~~~~~p 472 (732)
+.+ ....+-.++| ++|| .++-..+...
T Consensus 310 ---i~~~~~~~~~h~ef-~~dG-~~v~vS~~~~ 337 (369)
T PF02239_consen 310 ---ITPGPGKRVVHMEF-NPDG-KEVWVSVWDG 337 (369)
T ss_dssp ---HHHHHT--EEEEEE--TTS-SEEEEEEE--
T ss_pred ---EeccCCCcEeccEE-CCCC-CEEEEEEecC
Confidence 100 0112444555 4678 7776665543
|
... |
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=3.7e-05 Score=81.09 Aligned_cols=255 Identities=13% Similarity=0.040 Sum_probs=125.8
Q ss_pred eEEECCCCcEEEEEEeccCCceEEEEEEECC-CCcee--cccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcc
Q 004766 136 KVSVSEDAKYLAYALSYSGSDWATIKLMRIE-DQIVE--ADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTET 212 (732)
Q Consensus 136 ~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~-~g~~~--~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~ 212 (732)
.+.+||||++|+.+... ...|.+++++ +|... ...........++++|||+.||.+...
T Consensus 39 ~l~~spd~~~lyv~~~~----~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~~~-------------- 100 (330)
T PRK11028 39 PMVISPDKRHLYVGVRP----EFRVLSYRIADDGALTFAAESPLPGSPTHISTDHQGRFLFSASYN-------------- 100 (330)
T ss_pred cEEECCCCCEEEEEECC----CCcEEEEEECCCCceEEeeeecCCCCceEEEECCCCCEEEEEEcC--------------
Confidence 57899999988655321 2367777775 45421 111111123679999999988776421
Q ss_pred cCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCC
Q 004766 213 DSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGL 292 (732)
Q Consensus 213 ~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~ 292 (732)
...|..+++.+.......+...+. ......+.++|||+++++... . ...|+++|+.+.. .+... .
T Consensus 101 ----~~~v~v~~~~~~g~~~~~~~~~~~-~~~~~~~~~~p~g~~l~v~~~-~---~~~v~v~d~~~~g-~l~~~-----~ 165 (330)
T PRK11028 101 ----ANCVSVSPLDKDGIPVAPIQIIEG-LEGCHSANIDPDNRTLWVPCL-K---EDRIRLFTLSDDG-HLVAQ-----E 165 (330)
T ss_pred ----CCeEEEEEECCCCCCCCceeeccC-CCcccEeEeCCCCCEEEEeeC-C---CCEEEEEEECCCC-ccccc-----C
Confidence 235667776533211111111111 111245779999999876543 2 2468888876521 00000 0
Q ss_pred CCcEEeeecccceEEEEEecCCeEEEEeCCCCCCceEEEEeCC--CCC--CceEe--ccCC--CCCceeEEEEecCCEEE
Q 004766 293 LPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLK--EPN--DWFEV--IPEA--ERDVLESATAVNLNQMI 364 (732)
Q Consensus 293 ~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~--~~~--~~~~l--~~~~--~~~~l~~~~~~~~~~l~ 364 (732)
........+.......|+|||+.+|+. +... ..|..++++ ++. ....+ +|.. .......+.++++++.+
T Consensus 166 ~~~~~~~~g~~p~~~~~~pdg~~lyv~-~~~~--~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~l 242 (330)
T PRK11028 166 PAEVTTVEGAGPRHMVFHPNQQYAYCV-NELN--SSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHL 242 (330)
T ss_pred CCceecCCCCCCceEEECCCCCEEEEE-ecCC--CEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEE
Confidence 000111112222334689999888765 4332 356666654 232 11111 1211 01112246677765544
Q ss_pred EEEecCCeeEEEEEeCCC-Cceee---ecccccceeeEeecccCCcEEEEEEecCCCCceEEEEECCCC
Q 004766 365 VSYLSDVKYVLQIRDLKN-GSLLH---QLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTE 429 (732)
Q Consensus 365 ~~~~~~g~~~l~~~d~~~-g~~~~---~l~~~~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~ 429 (732)
+...+. ...|.+|+++. +..++ .+... .....+.+++||+.++++-.. ..--.+|.+|..++
T Consensus 243 yv~~~~-~~~I~v~~i~~~~~~~~~~~~~~~~-~~p~~~~~~~dg~~l~va~~~-~~~v~v~~~~~~~g 308 (330)
T PRK11028 243 YACDRT-ASLISVFSVSEDGSVLSFEGHQPTE-TQPRGFNIDHSGKYLIAAGQK-SHHISVYEIDGETG 308 (330)
T ss_pred EEecCC-CCeEEEEEEeCCCCeEEEeEEEecc-ccCCceEECCCCCEEEEEEcc-CCcEEEEEEcCCCC
Confidence 444332 24677777642 22212 12111 122356778999988875432 22234444454555
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=2.6e-05 Score=92.33 Aligned_cols=239 Identities=16% Similarity=0.148 Sum_probs=134.7
Q ss_pred EEEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCC----ce----ecccccceeeeeEEEEeC-CcEEEEEEecCCCC
Q 004766 132 AALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQ----IV----EADALSWFKFSSIAWTHD-SKGFFYSRYPAPKE 202 (732)
Q Consensus 132 ~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g----~~----~~~~~~~~~~~~~~WspD-g~~l~y~~~~~~~~ 202 (732)
..+..+.|||||++||-+. ....|+|||+.+. .. ............++|+|. ++.|+.+.
T Consensus 484 ~~V~~i~fs~dg~~latgg-----~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~------ 552 (793)
T PLN00181 484 NLVCAIGFDRDGEFFATAG-----VNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSN------ 552 (793)
T ss_pred CcEEEEEECCCCCEEEEEe-----CCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEe------
Confidence 3467889999999988542 2358999997642 10 000011123467899885 55555443
Q ss_pred CCCCCCCCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEec-CCcEEEEEEecCCcceEEEEEEeCCCCCC
Q 004766 203 GKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTE-DGQYLVMCIEENCDPVNKVYYCDLSALPE 281 (732)
Q Consensus 203 ~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~~l~~~d~~~~~~ 281 (732)
....|.+|++.+++. +..+. .+...+.+++|+| ||.+|+..+.+ ..+.++|+.++.
T Consensus 553 -------------~Dg~v~lWd~~~~~~--~~~~~--~H~~~V~~l~~~p~~~~~L~Sgs~D-----g~v~iWd~~~~~- 609 (793)
T PLN00181 553 -------------FEGVVQVWDVARSQL--VTEMK--EHEKRVWSIDYSSADPTLLASGSDD-----GSVKLWSINQGV- 609 (793)
T ss_pred -------------CCCeEEEEECCCCeE--EEEec--CCCCCEEEEEEcCCCCCEEEEEcCC-----CEEEEEECCCCc-
Confidence 234688999876532 12222 2334567899997 77776655432 347888887632
Q ss_pred CcccccccCCCCCcEEeeecccceEEEEE-ecCCeEEEEeCCCCCCceEEEEeCCCCC-CceEeccCCCCCceeEEEEec
Q 004766 282 GLEGFKKRDGLLPFVKLIDGFDAQYEVIA-NDDTVFTFLTNKDAPKYKIIRVDLKEPN-DWFEVIPEAERDVLESATAVN 359 (732)
Q Consensus 282 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~s-~dg~~l~~~s~~~~~~~~l~~~d~~~~~-~~~~l~~~~~~~~l~~~~~~~ 359 (732)
....+..........|. ++|..|+..+. ++.|..+|+.+.. ....+..+. ..+..+.+.+
T Consensus 610 ------------~~~~~~~~~~v~~v~~~~~~g~~latgs~----dg~I~iwD~~~~~~~~~~~~~h~--~~V~~v~f~~ 671 (793)
T PLN00181 610 ------------SIGTIKTKANICCVQFPSESGRSLAFGSA----DHKVYYYDLRNPKLPLCTMIGHS--KTVSYVRFVD 671 (793)
T ss_pred ------------EEEEEecCCCeEEEEEeCCCCCEEEEEeC----CCeEEEEECCCCCccceEecCCC--CCEEEEEEeC
Confidence 12222211111112353 45666554332 3478899987654 233444443 4577788775
Q ss_pred CCEEEEEEecCCeeEEEEEeCCCC------ceeeecccccceeeEeecccCCcEEEEEEecCCCCceEEEEECCCC
Q 004766 360 LNQMIVSYLSDVKYVLQIRDLKNG------SLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTE 429 (732)
Q Consensus 360 ~~~l~~~~~~~g~~~l~~~d~~~g------~~~~~l~~~~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~ 429 (732)
+..+++...++ .|.+||+..+ +.+..+..+...+..+.+++++..++ +.+. -..++.|+....
T Consensus 672 -~~~lvs~s~D~--~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~la-sgs~---D~~v~iw~~~~~ 740 (793)
T PLN00181 672 -SSTLVSSSTDN--TLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIA-TGSE---TNEVFVYHKAFP 740 (793)
T ss_pred -CCEEEEEECCC--EEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEE-EEeC---CCEEEEEECCCC
Confidence 45566666664 6888988632 22334443344455667778776443 3222 246777776544
|
|
| >PF06821 Ser_hydrolase: Serine hydrolase; InterPro: IPR010662 This family contains a number of hypothetical bacterial proteins of unknown function, which may be cytosolic | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.9e-06 Score=80.32 Aligned_cols=157 Identities=13% Similarity=-0.009 Sum_probs=90.8
Q ss_pred EEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCccHHHHHHHHHHHHHHcCCCCCCcE
Q 004766 484 LLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSRKL 563 (732)
Q Consensus 484 vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i 563 (732)
|+.+||..++. ...|.+-+..-+... +.|-.++. .....++-+..++.-+.. +| +.+
T Consensus 1 v~IvhG~~~s~-~~HW~~wl~~~l~~~-~~V~~~~~------------------~~P~~~~W~~~l~~~i~~--~~-~~~ 57 (171)
T PF06821_consen 1 VLIVHGYGGSP-PDHWQPWLERQLENS-VRVEQPDW------------------DNPDLDEWVQALDQAIDA--ID-EPT 57 (171)
T ss_dssp EEEE--TTSST-TTSTHHHHHHHHTTS-EEEEEC--------------------TS--HHHHHHHHHHCCHC---T-TTE
T ss_pred CEEeCCCCCCC-ccHHHHHHHHhCCCC-eEEecccc------------------CCCCHHHHHHHHHHHHhh--cC-CCe
Confidence 46677754443 356665555555534 66666554 111233444444333332 33 459
Q ss_pred EEEecChhHHHHHHHH-hhCCCeeeEEEEcCCcccccccccCCCCCccccccCCCCCHHHHHHHHhcCcccCCCCCCCCC
Q 004766 564 CIEGGSNGGLLVGACI-NQRPDLFGCALAHVGVMDMLRYHKFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQN 642 (732)
Q Consensus 564 ~i~G~S~GG~l~~~~~-~~~p~~f~a~v~~~p~~d~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~sp~~~~~~~~~~~ 642 (732)
.++|||.|..+++.++ .+....++++++.+|+..-..... . .....+.. .|...
T Consensus 58 ilVaHSLGc~~~l~~l~~~~~~~v~g~lLVAp~~~~~~~~~--~--~~~~~f~~-------------~p~~~-------- 112 (171)
T PF06821_consen 58 ILVAHSLGCLTALRWLAEQSQKKVAGALLVAPFDPDDPEPF--P--PELDGFTP-------------LPRDP-------- 112 (171)
T ss_dssp EEEEETHHHHHHHHHHHHTCCSSEEEEEEES--SCGCHHCC--T--CGGCCCTT-------------SHCCH--------
T ss_pred EEEEeCHHHHHHHHHHhhcccccccEEEEEcCCCcccccch--h--hhcccccc-------------Ccccc--------
Confidence 9999999999999999 777889999999999843200000 0 00111111 01111
Q ss_pred CCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeCCCCCCCCCch
Q 004766 643 PDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPT 708 (732)
Q Consensus 643 ~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~ 708 (732)
...|.+++.++||+.||+..+.+++++|.. ++...+++||+.....
T Consensus 113 -----l~~~~~viaS~nDp~vp~~~a~~~A~~l~a---------------~~~~~~~~GHf~~~~G 158 (171)
T PF06821_consen 113 -----LPFPSIVIASDNDPYVPFERAQRLAQRLGA---------------ELIILGGGGHFNAASG 158 (171)
T ss_dssp -----HHCCEEEEEETTBSSS-HHHHHHHHHHHT----------------EEEEETS-TTSSGGGT
T ss_pred -----cCCCeEEEEcCCCCccCHHHHHHHHHHcCC---------------CeEECCCCCCcccccC
Confidence 122448999999999999999999999863 7888899999876543
|
The Crystal Structure Of The Yden Gene Product Swiss:P96671 from B. Subtilis has been solved. The structure shows an alpha-beta hydrolase fold suggesting an enzymatic function for these proteins [].; GO: 0016787 hydrolase activity; PDB: 3BDV_B 2QS9_A 1UXO_A. |
| >PRK07868 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=98.59 E-value=2e-06 Score=103.85 Aligned_cols=106 Identities=12% Similarity=0.116 Sum_probs=64.8
Q ss_pred CccEEEEEcCCCCccCCCCcChh--HHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCccHHHH----HHHHHHHHH
Q 004766 480 SHPCLLYGYGGFNISVTPSFSVS--RTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDD----FISASEYLI 553 (732)
Q Consensus 480 ~~P~vv~~hG~~~~~~~~~~~~~--~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D----~~~~~~~l~ 553 (732)
..|.||++||.......+...+. +..+|.++||.|+++|+. ... .. .. . ...++.| +.++++.+.
T Consensus 66 ~~~plllvhg~~~~~~~~d~~~~~s~v~~L~~~g~~v~~~d~G-~~~--~~--~~-~---~~~~l~~~i~~l~~~l~~v~ 136 (994)
T PRK07868 66 VGPPVLMVHPMMMSADMWDVTRDDGAVGILHRAGLDPWVIDFG-SPD--KV--EG-G---MERNLADHVVALSEAIDTVK 136 (994)
T ss_pred CCCcEEEECCCCCCccceecCCcccHHHHHHHCCCEEEEEcCC-CCC--hh--Hc-C---ccCCHHHHHHHHHHHHHHHH
Confidence 45889999998766554443321 345665599999999962 221 11 00 0 0123333 344444443
Q ss_pred HcCCCCCCcEEEEecChhHHHHHHHHhhC-CCeeeEEEEcCCccc
Q 004766 554 SAGYTQSRKLCIEGGSNGGLLVGACINQR-PDLFGCALAHVGVMD 597 (732)
Q Consensus 554 ~~~~~d~~~i~i~G~S~GG~l~~~~~~~~-p~~f~a~v~~~p~~d 597 (732)
+.. .+++-++|+|+||.++..++..+ |++++.+|+....+|
T Consensus 137 ~~~---~~~v~lvG~s~GG~~a~~~aa~~~~~~v~~lvl~~~~~d 178 (994)
T PRK07868 137 DVT---GRDVHLVGYSQGGMFCYQAAAYRRSKDIASIVTFGSPVD 178 (994)
T ss_pred Hhh---CCceEEEEEChhHHHHHHHHHhcCCCccceEEEEecccc
Confidence 332 24799999999999998777644 568888876444433
|
|
| >PF08538 DUF1749: Protein of unknown function (DUF1749); InterPro: IPR013744 This is a plant and fungal family of unknown function | Back alignment and domain information |
|---|
Probab=98.59 E-value=3.6e-07 Score=90.98 Aligned_cols=219 Identities=17% Similarity=0.148 Sum_probs=82.8
Q ss_pred ccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCC-CCCchhHHhcccccCCccHHHHHHHHHHHHHHcC--C
Q 004766 481 HPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGG-GEYGEEWHKGGALAKKQNCFDDFISASEYLISAG--Y 557 (732)
Q Consensus 481 ~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~-g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~--~ 557 (732)
.-+||++-|-...-....|.+.+...|...||.|+.+..+-+ ++||..-. .++.+|+.+|++||+... .
T Consensus 33 ~~~llfIGGLtDGl~tvpY~~~La~aL~~~~wsl~q~~LsSSy~G~G~~SL--------~~D~~eI~~~v~ylr~~~~g~ 104 (303)
T PF08538_consen 33 PNALLFIGGLTDGLLTVPYLPDLAEALEETGWSLFQVQLSSSYSGWGTSSL--------DRDVEEIAQLVEYLRSEKGGH 104 (303)
T ss_dssp SSEEEEE--TT--TT-STCHHHHHHHHT-TT-EEEEE--GGGBTTS-S--H--------HHHHHHHHHHHHHHHHHS---
T ss_pred CcEEEEECCCCCCCCCCchHHHHHHHhccCCeEEEEEEecCccCCcCcchh--------hhHHHHHHHHHHHHHHhhccc
Confidence 347888866444344445666677778768999999999863 45554322 346799999999999873 2
Q ss_pred CCCCcEEEEecChhHHHHHHHHhhC-C----CeeeEEEEcCCcccccccccCCC--------------------C-----
Q 004766 558 TQSRKLCIEGGSNGGLLVGACINQR-P----DLFGCALAHVGVMDMLRYHKFTI--------------------G----- 607 (732)
Q Consensus 558 ~d~~~i~i~G~S~GG~l~~~~~~~~-p----~~f~a~v~~~p~~d~~~~~~~~~--------------------~----- 607 (732)
...++|+++|||-|---++.++... + ....++|+++|+.|-........ +
T Consensus 105 ~~~~kIVLmGHSTGcQdvl~Yl~~~~~~~~~~~VdG~ILQApVSDREa~~~~~~~~~~~~~~v~~A~~~i~~g~~~~~lp 184 (303)
T PF08538_consen 105 FGREKIVLMGHSTGCQDVLHYLSSPNPSPSRPPVDGAILQAPVSDREAILNFLGEREAYEELVALAKELIAEGKGDEILP 184 (303)
T ss_dssp ---S-EEEEEECCHHHHHHHHHHH-TT---CCCEEEEEEEEE---TTSTTTSHHH---HHHHHHHHHHHHHCT-TT-GG-
T ss_pred cCCccEEEEecCCCcHHHHHHHhccCccccccceEEEEEeCCCCChhHhhhcccchHHHHHHHHHHHHHHHcCCCCceee
Confidence 3578999999999999999888863 2 56999999999998532211000 0
Q ss_pred Cccccc--cCCCCCHHHHHHHHhcCcc------------cCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchH-HHHHH
Q 004766 608 HAWVSD--FGCSEEEEEFYWLIKYSPL------------HNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLH-SLKLL 672 (732)
Q Consensus 608 ~~~~~~--~g~p~~~~~~~~~~~~sp~------------~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~-~~~~~ 672 (732)
..+... |+.|-.. ++++--.+|- ..+++.+ ..+..|+|++.|.+|..||.+. -.++.
T Consensus 185 ~~~~~~~~~~~PiTA--~Rf~SL~s~~gdDD~FSSDL~de~l~~tf------G~v~~plLvl~Sg~DEyvP~~vdk~~Ll 256 (303)
T PF08538_consen 185 REFTPLVFYDTPITA--YRFLSLASPGGDDDYFSSDLSDERLKKTF------GKVSKPLLVLYSGKDEYVPPWVDKEALL 256 (303)
T ss_dssp ---GGTTT-SS---H--HHHHT-S-SSHHHHTHHHHHTT-HHHHTG------GG--S-EEEEEE--TT------------
T ss_pred ccccccccCCCcccH--HHHHhccCCCCcccccCCCCCHHHHHHHh------ccCCCceEEEecCCCceecccccccccc
Confidence 000000 0122111 1111111111 0000000 0266799999999999999876 56788
Q ss_pred HHHHHhhcCCCCCCCCC-CCEEEEEeCCCCCCCCCchHH--HHHHHHHHHHHH
Q 004766 673 ATMQYVLCTSLENSPQT-NPIIGRIERKAGHGVGLPTQK--MIDEAADRYGFM 722 (732)
Q Consensus 673 ~~l~~~~~~~~~~~~~~-~~~~~~~~~~~gH~~~~~~~~--~~~~~~~~~~fl 722 (732)
++++.+. ..+ ....-.+.||+.|....+..+ +.....++..||
T Consensus 257 ~rw~~a~-------~~~~~s~~S~iI~GA~H~~~~~~~~~~~~~l~~rV~~fl 302 (303)
T PF08538_consen 257 ERWKAAT-------NPKIWSPLSGIIPGASHNVSGPSQAEAREWLVERVVKFL 302 (303)
T ss_dssp -----------------------------------------------------
T ss_pred ccccccc-------ccccccccccccccccccccccccccccccccccccccC
Confidence 8888761 111 122356889999998765432 123344556665
|
This family contains many hypothetical proteins. ; PDB: 2Q0X_B. |
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=0.0002 Score=79.38 Aligned_cols=245 Identities=9% Similarity=-0.041 Sum_probs=131.1
Q ss_pred ECCCCcEEEEEEec-cCCceEEEEEEECCCCceecc-cccceeeeeEEEEeC-CcEEEEEEecCCCCCCCCCCCCcccCC
Q 004766 139 VSEDAKYLAYALSY-SGSDWATIKLMRIEDQIVEAD-ALSWFKFSSIAWTHD-SKGFFYSRYPAPKEGKDMDAGTETDSN 215 (732)
Q Consensus 139 ~SPDG~~la~~~~~-~G~e~~~i~v~dl~~g~~~~~-~~~~~~~~~~~WspD-g~~l~y~~~~~~~~~~~~~~~~~~~~~ 215 (732)
++..++++|+..+. +|+....|.++++.....+.. ......+..++|+|+ +..|+..+.
T Consensus 34 ia~n~~~~A~~w~~~gGG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~------------------ 95 (568)
T PTZ00420 34 IACSSGFVAVPWEVEGGGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSE------------------ 95 (568)
T ss_pred EeeCCCeEEEEEEcCCCCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeC------------------
Confidence 45557788887754 344456788888765543321 111223578999997 565555432
Q ss_pred cccEEEEEECCCCCC------CCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCccccccc
Q 004766 216 LYHEFYYHFLGTKQS------EDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKR 289 (732)
Q Consensus 216 ~~~~v~~~~lgt~~~------~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~ 289 (732)
...|.+|++.++.. ..+..+.. +...+..+.|+|++..++++++.. ..|.++|+.++.
T Consensus 96 -DgtIrIWDi~t~~~~~~~i~~p~~~L~g--H~~~V~sVaf~P~g~~iLaSgS~D----gtIrIWDl~tg~--------- 159 (568)
T PTZ00420 96 -DLTIRVWEIPHNDESVKEIKDPQCILKG--HKKKISIIDWNPMNYYIMCSSGFD----SFVNIWDIENEK--------- 159 (568)
T ss_pred -CCeEEEEECCCCCccccccccceEEeec--CCCcEEEEEECCCCCeEEEEEeCC----CeEEEEECCCCc---------
Confidence 23688888865321 11112222 233566899999999887655432 347788987642
Q ss_pred CCCCCcEEeeecccceEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEE---EecCCEEEEE
Q 004766 290 DGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESAT---AVNLNQMIVS 366 (732)
Q Consensus 290 ~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~---~~~~~~l~~~ 366 (732)
....+..........|+++|..|+..+ . ...|..+|+.++.....+..+........+. +++++..+++
T Consensus 160 ----~~~~i~~~~~V~SlswspdG~lLat~s-~---D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlT 231 (568)
T PTZ00420 160 ----RAFQINMPKKLSSLKWNIKGNLLSGTC-V---GKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILS 231 (568)
T ss_pred ----EEEEEecCCcEEEEEECCCCCEEEEEe-c---CCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEE
Confidence 111221111111225899998775433 2 2368889998876444444444211111222 2243444444
Q ss_pred EecCC--eeEEEEEeCCC-Cceeeecccc--cceeeEeecccCCcEEEEEEecCCCCceEEEEECCCC
Q 004766 367 YLSDV--KYVLQIRDLKN-GSLLHQLPIE--IGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTE 429 (732)
Q Consensus 367 ~~~~g--~~~l~~~d~~~-g~~~~~l~~~--~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~ 429 (732)
...+. ..+|.+||+.+ ++.+..+.++ .+.+. ...+++.+.++++..+ -..++.|++..+
T Consensus 232 tG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~-p~~D~~tg~l~lsGkG---D~tIr~~e~~~~ 295 (568)
T PTZ00420 232 TGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLI-PHYDESTGLIYLIGKG---DGNCRYYQHSLG 295 (568)
T ss_pred EEcCCCCccEEEEEECCCCCCceEEEEecCCccceE-EeeeCCCCCEEEEEEC---CCeEEEEEccCC
Confidence 44332 24799999874 3443343333 23221 2233444555555443 245777776655
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.5e-05 Score=75.45 Aligned_cols=241 Identities=11% Similarity=0.039 Sum_probs=136.6
Q ss_pred EEEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecccc---cceeeeeEEEEeCCcEEEEEEecCCCCCCCCCC
Q 004766 132 AALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADAL---SWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDA 208 (732)
Q Consensus 132 ~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~---~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~ 208 (732)
..+..+.|.-||++||-. +-..++.|++++.+..+.+-. .......+.|.|-..-++++..
T Consensus 21 ~~v~Sv~wn~~g~~lasg-----s~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas----------- 84 (313)
T KOG1407|consen 21 QKVHSVAWNCDGTKLASG-----SFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATAS----------- 84 (313)
T ss_pred hcceEEEEcccCceeeec-----ccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEec-----------
Confidence 346688999999999944 333578888888775443211 1112346789887655655542
Q ss_pred CCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccc
Q 004766 209 GTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKK 288 (732)
Q Consensus 209 ~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~ 288 (732)
....|.+|++-++.....+... +-...+.|||||+++++...+ .+|-.+|..+-.
T Consensus 85 -------~dk~ir~wd~r~~k~~~~i~~~-----~eni~i~wsp~g~~~~~~~kd-----D~it~id~r~~~-------- 139 (313)
T KOG1407|consen 85 -------GDKTIRIWDIRSGKCTARIETK-----GENINITWSPDGEYIAVGNKD-----DRITFIDARTYK-------- 139 (313)
T ss_pred -------CCceEEEEEeccCcEEEEeecc-----CcceEEEEcCCCCEEEEecCc-----ccEEEEEecccc--------
Confidence 2335788887665433222211 122468999999999876532 346667765521
Q ss_pred cCCCCCcEEeeecccceEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecCCEEEEEEe
Q 004766 289 RDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYL 368 (732)
Q Consensus 289 ~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~~l~~~~~ 368 (732)
........+...-..|. ..+.++|+++-.+ ...|+.++ .-+....+-.|. ...-.+.+.++++.+++..
T Consensus 140 -----~~~~~~~~~e~ne~~w~-~~nd~Fflt~GlG-~v~ILsyp--sLkpv~si~AH~--snCicI~f~p~GryfA~Gs 208 (313)
T KOG1407|consen 140 -----IVNEEQFKFEVNEISWN-NSNDLFFLTNGLG-CVEILSYP--SLKPVQSIKAHP--SNCICIEFDPDGRYFATGS 208 (313)
T ss_pred -----eeehhcccceeeeeeec-CCCCEEEEecCCc-eEEEEecc--ccccccccccCC--cceEEEEECCCCceEeecc
Confidence 00000001111112355 4556788887433 45566665 333334555554 3344567778777777777
Q ss_pred cCCeeEEEEEeCCCCceeeecccccceeeEeecccCCcEEEEEEecCCCCceEEEEECCCCC
Q 004766 369 SDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 430 (732)
Q Consensus 369 ~~g~~~l~~~d~~~g~~~~~l~~~~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~~ 430 (732)
.| ..+.+||++.--..+.++.-...|..++++-||..|+ +. ..-.-+=..+..+|.
T Consensus 209 AD--AlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lA-Sa---SEDh~IDIA~vetGd 264 (313)
T KOG1407|consen 209 AD--ALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLA-SA---SEDHFIDIAEVETGD 264 (313)
T ss_pred cc--ceeeccChhHhhhheeeccccCceEEEEeccCcceee-cc---CccceEEeEecccCC
Confidence 77 4677889863222344544456677788888988654 22 222334444566663
|
|
| >PF07224 Chlorophyllase: Chlorophyllase; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3 | Back alignment and domain information |
|---|
Probab=98.55 E-value=4.6e-07 Score=86.27 Aligned_cols=138 Identities=19% Similarity=0.167 Sum_probs=97.5
Q ss_pred CCCCCceEEEEEEE-cc--CCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEccc
Q 004766 444 FDRSEFHVHQVFVP-SK--DGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIR 520 (732)
Q Consensus 444 ~~~~~~~~~~~~~~-s~--dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~r 520 (732)
|....|..+.+.+. +. .-+-..|..|+.|.. .|.+|+|++.||.+-. ..|-.+++..+++.||+|++++.-
T Consensus 9 F~~G~~~~~~~~Vd~s~~~~~spPkpLlI~tP~~---~G~yPVilF~HG~~l~---ns~Ys~lL~HIASHGfIVVAPQl~ 82 (307)
T PF07224_consen 9 FETGKYKTKLFNVDTSSNSSPSPPKPLLIVTPSE---AGTYPVILFLHGFNLY---NSFYSQLLAHIASHGFIVVAPQLY 82 (307)
T ss_pred eecCCceeEEEeecCCCCCCCCCCCCeEEecCCc---CCCccEEEEeechhhh---hHHHHHHHHHHhhcCeEEEechhh
Confidence 34445555555552 11 111467899999986 5899999999997644 345556677788899999999975
Q ss_pred CCCCCchhHHhcccccCCccHHHHHHHHHHHHHHc--------CCCCCCcEEEEecChhHHHHHHHHhhC-CC-eeeEEE
Q 004766 521 GGGEYGEEWHKGGALAKKQNCFDDFISASEYLISA--------GYTQSRKLCIEGGSNGGLLVGACINQR-PD-LFGCAL 590 (732)
Q Consensus 521 G~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~--------~~~d~~~i~i~G~S~GG~l~~~~~~~~-p~-~f~a~v 590 (732)
... ...+...+++...+++||-+. --.+.+++++.|||.||-.+.+++..+ .+ .|.|.|
T Consensus 83 ~~~-----------~p~~~~Ei~~aa~V~~WL~~gL~~~Lp~~V~~nl~klal~GHSrGGktAFAlALg~a~~lkfsaLI 151 (307)
T PF07224_consen 83 TLF-----------PPDGQDEIKSAASVINWLPEGLQHVLPENVEANLSKLALSGHSRGGKTAFALALGYATSLKFSALI 151 (307)
T ss_pred ccc-----------CCCchHHHHHHHHHHHHHHhhhhhhCCCCcccccceEEEeecCCccHHHHHHHhcccccCchhhee
Confidence 421 134456678889999999753 124678999999999999999988865 23 378888
Q ss_pred EcCCcccc
Q 004766 591 AHVGVMDM 598 (732)
Q Consensus 591 ~~~p~~d~ 598 (732)
..-|+.-.
T Consensus 152 GiDPV~G~ 159 (307)
T PF07224_consen 152 GIDPVAGT 159 (307)
T ss_pred cccccCCC
Confidence 77776543
|
1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process |
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=98.54 E-value=0.0001 Score=73.27 Aligned_cols=244 Identities=10% Similarity=0.087 Sum_probs=137.9
Q ss_pred CCCEEEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCcee-cccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCC
Q 004766 129 DGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVE-ADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMD 207 (732)
Q Consensus 129 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~-~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~ 207 (732)
+++-++....||-||.+|| .|+=...|.|+...+|... +...+-....-+.|.|-+..|+..+.+.
T Consensus 104 gHKDSVt~~~FshdgtlLA-----TGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DG-------- 170 (399)
T KOG0296|consen 104 GHKDSVTCCSFSHDGTLLA-----TGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDG-------- 170 (399)
T ss_pred CCCCceEEEEEccCceEEE-----ecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCC--------
Confidence 3556788999999999998 3333358999999988743 2111111235578999888777765433
Q ss_pred CCCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCccccc
Q 004766 208 AGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFK 287 (732)
Q Consensus 208 ~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~ 287 (732)
.+|.|.+..+ ....++.+... -...-.++||||.|+....++ .|.++++.++..- -.+.
T Consensus 171 -----------svWmw~ip~~--~~~kv~~Gh~~--~ct~G~f~pdGKr~~tgy~dg-----ti~~Wn~ktg~p~-~~~~ 229 (399)
T KOG0296|consen 171 -----------SVWMWQIPSQ--ALCKVMSGHNS--PCTCGEFIPDGKRILTGYDDG-----TIIVWNPKTGQPL-HKIT 229 (399)
T ss_pred -----------cEEEEECCCc--ceeeEecCCCC--CcccccccCCCceEEEEecCc-----eEEEEecCCCcee-EEec
Confidence 5999999875 23346655332 123456899999997665433 3677777764210 0000
Q ss_pred ccCCC--CCc-------EEeeec-ccceEEEEEecCCeEEEEeCC------------------------------CCCCc
Q 004766 288 KRDGL--LPF-------VKLIDG-FDAQYEVIANDDTVFTFLTNK------------------------------DAPKY 327 (732)
Q Consensus 288 ~~~~~--~~~-------~~l~~~-~~~~~~~~s~dg~~l~~~s~~------------------------------~~~~~ 327 (732)
..+. .+. ..++.+ .+........-..++.+..|. +.-.+
T Consensus 230 -~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG 308 (399)
T KOG0296|consen 230 -QAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDG 308 (399)
T ss_pred -ccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccc
Confidence 0000 000 001111 111111111111122222220 11245
Q ss_pred eEEEEeCCCCCCceEeccCCCCCceeEEEEecCCEEEEEEecCCeeEEEEEeCCCCceeeecccccceeeEeecccCCcE
Q 004766 328 KIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSV 407 (732)
Q Consensus 328 ~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~~l~~~~~~~g~~~l~~~d~~~g~~~~~l~~~~g~v~~~~~s~d~~~ 407 (732)
+|..+|++..+ .+...++. ..+..+.|.+ ...+++...+| .|+.||..+|+.+...+.+...|..+..+++.+
T Consensus 309 ~i~iyD~a~~~-~R~~c~he--~~V~~l~w~~-t~~l~t~c~~g--~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~- 381 (399)
T KOG0296|consen 309 TIAIYDLAAST-LRHICEHE--DGVTKLKWLN-TDYLLTACANG--KVRQWDARTGQLKFTYTGHQMGILDFALSPQKR- 381 (399)
T ss_pred eEEEEecccch-hheeccCC--CceEEEEEcC-cchheeeccCc--eEEeeeccccceEEEEecCchheeEEEEcCCCc-
Confidence 67777776655 45555554 3466677777 45555666664 788999888987667776666777788888776
Q ss_pred EEEEEec
Q 004766 408 VFISFTS 414 (732)
Q Consensus 408 l~~~~ss 414 (732)
++++.+.
T Consensus 382 ~vvT~s~ 388 (399)
T KOG0296|consen 382 LVVTVSD 388 (399)
T ss_pred EEEEecC
Confidence 3445444
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.54 E-value=7.1e-05 Score=72.18 Aligned_cols=256 Identities=13% Similarity=0.133 Sum_probs=148.3
Q ss_pred eeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEE
Q 004766 179 KFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLV 258 (732)
Q Consensus 179 ~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~ 258 (732)
++..+-|++|++.|+-.+.+. ++.+|+.-|.+.... . +-...|++..++||.|++++
T Consensus 57 Ki~~~~ws~Dsr~ivSaSqDG-------------------klIvWDs~TtnK~ha--i--pl~s~WVMtCA~sPSg~~VA 113 (343)
T KOG0286|consen 57 KIYAMDWSTDSRRIVSASQDG-------------------KLIVWDSFTTNKVHA--I--PLPSSWVMTCAYSPSGNFVA 113 (343)
T ss_pred ceeeeEecCCcCeEEeeccCC-------------------eEEEEEcccccceeE--E--ecCceeEEEEEECCCCCeEE
Confidence 357899999999999876544 688899877654432 2 22346899999999999998
Q ss_pred EEEecCCcceEEEEEEeCCCCCCCcccccccCCCCCcEEeeecccceE--EEEEecCCeEEEEeCCCCCCceEEEEeCCC
Q 004766 259 MCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQY--EVIANDDTVFTFLTNKDAPKYKIIRVDLKE 336 (732)
Q Consensus 259 ~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~ 336 (732)
...-+ +..-++++.+.... ...+..+...+...-. ..|.+|+ +|+ +. ........+|+++
T Consensus 114 cGGLd-----N~Csiy~ls~~d~~--------g~~~v~r~l~gHtgylScC~f~dD~-~il--T~--SGD~TCalWDie~ 175 (343)
T KOG0286|consen 114 CGGLD-----NKCSIYPLSTRDAE--------GNVRVSRELAGHTGYLSCCRFLDDN-HIL--TG--SGDMTCALWDIET 175 (343)
T ss_pred ecCcC-----ceeEEEeccccccc--------ccceeeeeecCccceeEEEEEcCCC-ceE--ec--CCCceEEEEEccc
Confidence 65432 33444565542100 0111222222221111 1244443 443 22 2245788999999
Q ss_pred CCCceEeccCCCCCceeEEEEec-CCEEEEEEecCCeeEEEEEeCCCCceeeecccccceeeEeecccCCcEEEEEEecC
Q 004766 337 PNDWFEVIPEAERDVLESATAVN-LNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSF 415 (732)
Q Consensus 337 ~~~~~~l~~~~~~~~l~~~~~~~-~~~l~~~~~~~g~~~l~~~d~~~g~~~~~l~~~~g~v~~~~~s~d~~~l~~~~ss~ 415 (732)
+...+.+..|. ..+-++.+++ +...+++..-|. ..++||...|...+.+..+...|..+.+-|+|.. |...|.
T Consensus 176 g~~~~~f~GH~--gDV~slsl~p~~~ntFvSg~cD~--~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~a--fatGSD 249 (343)
T KOG0286|consen 176 GQQTQVFHGHT--GDVMSLSLSPSDGNTFVSGGCDK--SAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDA--FATGSD 249 (343)
T ss_pred ceEEEEecCCc--ccEEEEecCCCCCCeEEeccccc--ceeeeeccCcceeEeecccccccceEEEccCCCe--eeecCC
Confidence 87555555555 3455677777 567888877774 4567898878766677666777888888888863 333333
Q ss_pred CCCceEEEEECCCCCCceEEEEeecC-CCCCCCCc-eEEEEEEEccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCC
Q 004766 416 LIPGIVYQCNLKTETPEMKIFRETII-PGFDRSEF-HVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGF 491 (732)
Q Consensus 416 ~~p~~~y~~d~~~~~~~~~~l~~~~~-~~~~~~~~-~~~~~~~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~ 491 (732)
. .+...||+.... ++.++..... -++..-.| ..-++.|...+. ..+.+|=.. .+..-.+|++|+.-
T Consensus 250 D--~tcRlyDlRaD~-~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d-~~c~vWDtl------k~e~vg~L~GHeNR 317 (343)
T KOG0286|consen 250 D--ATCRLYDLRADQ-ELAVYSHDSIICGITSVAFSKSGRLLFAGYDD-FTCNVWDTL------KGERVGVLAGHENR 317 (343)
T ss_pred C--ceeEEEeecCCc-EEeeeccCcccCCceeEEEcccccEEEeeecC-CceeEeecc------ccceEEEeeccCCe
Confidence 3 445566776543 2444332111 11222222 334444544333 455555332 35677888888863
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.9e-05 Score=83.98 Aligned_cols=227 Identities=13% Similarity=0.020 Sum_probs=137.6
Q ss_pred EEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecccc--cceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCC
Q 004766 133 ALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADAL--SWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGT 210 (732)
Q Consensus 133 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~--~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~ 210 (732)
.+..+.|+|+|++||.... ...+.|||++..+.+.... ...+.+.++|. +..+.-.
T Consensus 219 ~vtSv~ws~~G~~LavG~~-----~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssG--------------- 276 (484)
T KOG0305|consen 219 LVTSVKWSPDGSHLAVGTS-----DGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSG--------------- 276 (484)
T ss_pred ceEEEEECCCCCEEEEeec-----CCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEe---------------
Confidence 4678999999999998753 2479999998766443222 23356889997 3333332
Q ss_pred cccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccC
Q 004766 211 ETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRD 290 (732)
Q Consensus 211 ~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~ 290 (732)
.+...|..+++-..+..-. ... .+..-+.++.|++||++++-..+ .+.++++|....
T Consensus 277 ----sr~~~I~~~dvR~~~~~~~-~~~--~H~qeVCgLkws~d~~~lASGgn-----DN~~~Iwd~~~~----------- 333 (484)
T KOG0305|consen 277 ----SRDGKILNHDVRISQHVVS-TLQ--GHRQEVCGLKWSPDGNQLASGGN-----DNVVFIWDGLSP----------- 333 (484)
T ss_pred ----cCCCcEEEEEEecchhhhh-hhh--cccceeeeeEECCCCCeeccCCC-----ccceEeccCCCc-----------
Confidence 2334566666655432211 111 12334678999999999874433 356888887441
Q ss_pred CCCCcEEeeecccce-EEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecCC-EEEEEEe
Q 004766 291 GLLPFVKLIDGFDAQ-YEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLN-QMIVSYL 368 (732)
Q Consensus 291 ~~~~~~~l~~~~~~~-~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~-~l~~~~~ 368 (732)
.+...+.....+. ...|+|...-|+.... +.....|..+|..++.....+-. ...|..+.|++.. .++.+.
T Consensus 334 --~p~~~~~~H~aAVKA~awcP~q~~lLAsGG-Gs~D~~i~fwn~~~g~~i~~vdt---gsQVcsL~Wsk~~kEi~sth- 406 (484)
T KOG0305|consen 334 --EPKFTFTEHTAAVKALAWCPWQSGLLATGG-GSADRCIKFWNTNTGARIDSVDT---GSQVCSLIWSKKYKELLSTH- 406 (484)
T ss_pred --cccEEEeccceeeeEeeeCCCccCceEEcC-CCcccEEEEEEcCCCcEeccccc---CCceeeEEEcCCCCEEEEec-
Confidence 1233333322222 2358886555554333 33456788888887763333322 3578899999843 354433
Q ss_pred cCCeeEEEEEeCCCCceeeecccccceeeEeecccCCcEEEEE
Q 004766 369 SDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFIS 411 (732)
Q Consensus 369 ~~g~~~l~~~d~~~g~~~~~l~~~~g~v~~~~~s~d~~~l~~~ 411 (732)
-....+|.+|+..+-+.+..+..+..-|..++.+|||..++..
T Consensus 407 G~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~ 449 (484)
T KOG0305|consen 407 GYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTG 449 (484)
T ss_pred CCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEe
Confidence 3334578888876555545666566667788999999876543
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=98.53 E-value=0.00021 Score=75.71 Aligned_cols=264 Identities=14% Similarity=0.137 Sum_probs=132.0
Q ss_pred EeEEECCCCcEEEEEEeccCCceEEEEEEEC--CCCceec--ccc-cceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCC
Q 004766 135 IKVSVSEDAKYLAYALSYSGSDWATIKLMRI--EDQIVEA--DAL-SWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAG 209 (732)
Q Consensus 135 ~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl--~~g~~~~--~~~-~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~ 209 (732)
+.+.+||++++| |+.+..+.+...|..+.+ ++|.... ... .+.....++.+||++.|+.+...
T Consensus 40 s~l~~~~~~~~L-Y~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~----------- 107 (345)
T PF10282_consen 40 SWLAVSPDGRRL-YVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYG----------- 107 (345)
T ss_dssp CCEEE-TTSSEE-EEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETT-----------
T ss_pred ceEEEEeCCCEE-EEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEcc-----------
Confidence 367899999866 555554211234444444 4455321 111 22223568889999988877532
Q ss_pred CcccCCcccEEEEEECCCCCCCCeE--EEe----cC----CCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCC
Q 004766 210 TETDSNLYHEFYYHFLGTKQSEDIL--CWK----DP----EHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSAL 279 (732)
Q Consensus 210 ~~~~~~~~~~v~~~~lgt~~~~~~~--v~~----~~----~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~ 279 (732)
...|..+++.....-... ++. .+ ........+.++|||++++... .+. ..|++++++..
T Consensus 108 -------~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~d-lG~---D~v~~~~~~~~ 176 (345)
T PF10282_consen 108 -------GGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPD-LGA---DRVYVYDIDDD 176 (345)
T ss_dssp -------TTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEE-TTT---TEEEEEEE-TT
T ss_pred -------CCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEe-cCC---CEEEEEEEeCC
Confidence 234666666543211111 111 11 1112345788999999997654 332 45777776552
Q ss_pred CCCcccccccCCCCCcEEeeecccceEEEEEecCCeEEEEeCCCCCCceEEEEeCC--CCC--CceE--eccCCC--CCc
Q 004766 280 PEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLK--EPN--DWFE--VIPEAE--RDV 351 (732)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~--~~~--~~~~--l~~~~~--~~~ 351 (732)
...+.. .....+..+.......|+|||+.+|++.... . .|..+++. ++. .... ..+... ...
T Consensus 177 ~~~l~~-------~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s-~--~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 246 (345)
T PF10282_consen 177 TGKLTP-------VDSIKVPPGSGPRHLAFSPDGKYAYVVNELS-N--TVSVFDYDPSDGSLTEIQTISTLPEGFTGENA 246 (345)
T ss_dssp S-TEEE-------EEEEECSTTSSEEEEEE-TTSSEEEEEETTT-T--EEEEEEEETTTTEEEEEEEEESCETTSCSSSS
T ss_pred CceEEE-------eeccccccCCCCcEEEEcCCcCEEEEecCCC-C--cEEEEeecccCCceeEEEEeeeccccccccCC
Confidence 100100 0001122233344557999999988766543 2 44444444 332 1111 122211 124
Q ss_pred eeEEEEecCCE-EEEEEecCCeeEEEEEeC--CCCceeeeccc-c-cc-eeeEeecccCCcEEEEEEecCCCCceEEEEE
Q 004766 352 LESATAVNLNQ-MIVSYLSDVKYVLQIRDL--KNGSLLHQLPI-E-IG-SVNAISARREDSVVFISFTSFLIPGIVYQCN 425 (732)
Q Consensus 352 l~~~~~~~~~~-l~~~~~~~g~~~l~~~d~--~~g~~~~~l~~-~-~g-~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d 425 (732)
...+.++++++ ||++.+.. ..|.++++ ++|+. +.+.. + .| ....+.++++|+.|+++-.. ..--.+|.+|
T Consensus 247 ~~~i~ispdg~~lyvsnr~~--~sI~vf~~d~~~g~l-~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~-s~~v~vf~~d 322 (345)
T PF10282_consen 247 PAEIAISPDGRFLYVSNRGS--NSISVFDLDPATGTL-TLVQTVPTGGKFPRHFAFSPDGRYLYVANQD-SNTVSVFDID 322 (345)
T ss_dssp EEEEEE-TTSSEEEEEECTT--TEEEEEEECTTTTTE-EEEEEEEESSSSEEEEEE-TTSSEEEEEETT-TTEEEEEEEE
T ss_pred ceeEEEecCCCEEEEEeccC--CEEEEEEEecCCCce-EEEEEEeCCCCCccEEEEeCCCCEEEEEecC-CCeEEEEEEe
Confidence 56788887654 55554443 56777776 44553 33321 2 12 24567788999987765433 3335667778
Q ss_pred CCCCCCceEEEE
Q 004766 426 LKTETPEMKIFR 437 (732)
Q Consensus 426 ~~~~~~~~~~l~ 437 (732)
..+|. ++...
T Consensus 323 ~~tG~--l~~~~ 332 (345)
T PF10282_consen 323 PDTGK--LTPVG 332 (345)
T ss_dssp TTTTE--EEEEE
T ss_pred CCCCc--EEEec
Confidence 78884 54443
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.53 E-value=3.4e-06 Score=85.77 Aligned_cols=201 Identities=13% Similarity=0.101 Sum_probs=121.8
Q ss_pred EEEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecc-cccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCC
Q 004766 132 AALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEAD-ALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGT 210 (732)
Q Consensus 132 ~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~-~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~ 210 (732)
.++..+.+|||+++||+.- . ...|+++-..|++.+.. .+++ ...++.||.||+.|+.+..
T Consensus 304 ~~~e~FeVShd~~fia~~G----~-~G~I~lLhakT~eli~s~KieG-~v~~~~fsSdsk~l~~~~~------------- 364 (514)
T KOG2055|consen 304 KSMERFEVSHDSNFIAIAG----N-NGHIHLLHAKTKELITSFKIEG-VVSDFTFSSDSKELLASGG------------- 364 (514)
T ss_pred chhheeEecCCCCeEEEcc----c-CceEEeehhhhhhhhheeeecc-EEeeEEEecCCcEEEEEcC-------------
Confidence 3677899999999999872 2 25899999999986543 3333 3689999999998887632
Q ss_pred cccCCcccEEEEEECCCCCCCCeEEEecCCC-CeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCccccccc
Q 004766 211 ETDSNLYHEFYYHFLGTKQSEDILCWKDPEH-PKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKR 289 (732)
Q Consensus 211 ~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~-~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~ 289 (732)
..+||.|++++... +....++ ...-.+++.|++|.|++..+..+- +-++|..+--. .
T Consensus 365 ------~GeV~v~nl~~~~~----~~rf~D~G~v~gts~~~S~ng~ylA~GS~~Gi-----VNIYd~~s~~~-------s 422 (514)
T KOG2055|consen 365 ------TGEVYVWNLRQNSC----LHRFVDDGSVHGTSLCISLNGSYLATGSDSGI-----VNIYDGNSCFA-------S 422 (514)
T ss_pred ------CceEEEEecCCcce----EEEEeecCccceeeeeecCCCceEEeccCcce-----EEEeccchhhc-------c
Confidence 23799999997643 3322222 223458899999999987664433 33445332100 0
Q ss_pred CCCCCcE---EeeecccceEEEEEecCCeEEEEeCCCCCCceEEEEeCCCC-CCceEeccCCCCCceeEEEEecCCEEEE
Q 004766 290 DGLLPFV---KLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEP-NDWFEVIPEAERDVLESATAVNLNQMIV 365 (732)
Q Consensus 290 ~~~~~~~---~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~-~~~~~l~~~~~~~~l~~~~~~~~~~l~~ 365 (732)
..++|.. .|+.. .....|+||++.|++.++......+|+-++--+- .+|.+ +...-..+..+.+++++..+.
T Consensus 423 ~~PkPik~~dNLtt~--Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~--~n~~vg~vtc~aFSP~sG~lA 498 (514)
T KOG2055|consen 423 TNPKPIKTVDNLTTA--ITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPT--SNTKVGHVTCMAFSPNSGYLA 498 (514)
T ss_pred CCCCchhhhhhhhee--eeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCC--CCCcccceEEEEecCCCceEE
Confidence 1123332 22221 1223589999999988876544556655542110 12211 111124467788888666666
Q ss_pred EEecCCeeEEEE
Q 004766 366 SYLSDVKYVLQI 377 (732)
Q Consensus 366 ~~~~~g~~~l~~ 377 (732)
...+.|+..|+.
T Consensus 499 vGNe~grv~l~k 510 (514)
T KOG2055|consen 499 VGNEAGRVHLFK 510 (514)
T ss_pred eecCCCceeeEe
Confidence 777776555543
|
|
| >COG2382 Fes Enterochelin esterase and related enzymes [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.3e-06 Score=85.91 Aligned_cols=207 Identities=15% Similarity=0.091 Sum_probs=122.6
Q ss_pred EEEEEEccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHh---cCcEEEEEcccCCCCCchh
Q 004766 452 HQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRH---LGAVFCIANIRGGGEYGEE 528 (732)
Q Consensus 452 ~~~~~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~---~G~~v~~~~~rG~g~~g~~ 528 (732)
+.+.+.+.-. .+....++.|.++.+..++|+++..||-......+- ...+-.++++ ...+++.+++----...+.
T Consensus 70 ~~~~~~~~l~-~~~~~vv~lppgy~~~~k~pvl~~~DG~~~~~~g~i-~~~~dsli~~g~i~pai~vgid~~d~~~R~~~ 147 (299)
T COG2382 70 EEILYSSELL-SERRRVVYLPPGYNPLEKYPVLYLQDGQDWFRSGRI-PRILDSLIAAGEIPPAILVGIDYIDVKKRREE 147 (299)
T ss_pred hhhhhhhhhc-cceeEEEEeCCCCCccccccEEEEeccHHHHhcCCh-HHHHHHHHHcCCCCCceEEecCCCCHHHHHHH
Confidence 3444444333 366677888888888899999999998644332211 1122344441 2467777776332221122
Q ss_pred HHhcccccCCccHHHHHHH--HHHHHHHc--CCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCcccccccccC
Q 004766 529 WHKGGALAKKQNCFDDFIS--ASEYLISA--GYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKF 604 (732)
Q Consensus 529 ~~~~~~~~~~~~~~~D~~~--~~~~l~~~--~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~ 604 (732)
++ ....+.++++ .+=++.+. -.-++++-+++|-|+||+.+++++.++|++|..+++.+|.++..--...
T Consensus 148 ~~-------~n~~~~~~L~~eLlP~v~~~yp~~~~a~~r~L~G~SlGG~vsL~agl~~Pe~FG~V~s~Sps~~~~~~~~~ 220 (299)
T COG2382 148 LH-------CNEAYWRFLAQELLPYVEERYPTSADADGRVLAGDSLGGLVSLYAGLRHPERFGHVLSQSGSFWWTPLDTQ 220 (299)
T ss_pred hc-------ccHHHHHHHHHHhhhhhhccCcccccCCCcEEeccccccHHHHHHHhcCchhhceeeccCCccccCccccc
Confidence 22 1112222222 12222222 1236778999999999999999999999999999999998765211110
Q ss_pred CCCCccccccCCCCCHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhcCCCC
Q 004766 605 TIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLE 684 (732)
Q Consensus 605 ~~~~~~~~~~g~p~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~ 684 (732)
.++. . +...+-++.+.. ...-+|...+..+...++ .+.+++.|+..
T Consensus 221 -------~~~~------~---~~~l~~~~a~~~----------~~~~~l~~g~~~~~~~~p--Nr~L~~~L~~~------ 266 (299)
T COG2382 221 -------PQGE------V---AESLKILHAIGT----------DERIVLTTGGEEGDFLRP--NRALAAQLEKK------ 266 (299)
T ss_pred -------cccc------h---hhhhhhhhccCc----------cceEEeecCCccccccch--hHHHHHHHHhc------
Confidence 1111 1 111122233333 223566666666666665 45788889887
Q ss_pred CCCCCCCEEEEEeCCCCCCCCC
Q 004766 685 NSPQTNPIIGRIERKAGHGVGL 706 (732)
Q Consensus 685 ~~~~~~~~~~~~~~~~gH~~~~ 706 (732)
+.++.+..|+| ||-...
T Consensus 267 ----g~~~~yre~~G-gHdw~~ 283 (299)
T COG2382 267 ----GIPYYYREYPG-GHDWAW 283 (299)
T ss_pred ----CCcceeeecCC-CCchhH
Confidence 99999999998 996543
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=98.53 E-value=8.6e-06 Score=83.97 Aligned_cols=238 Identities=14% Similarity=0.064 Sum_probs=140.0
Q ss_pred CEEEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceec------------ccccce-eeeeEEEEeCCcEEEEEEe
Q 004766 131 TAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEA------------DALSWF-KFSSIAWTHDSKGFFYSRY 197 (732)
Q Consensus 131 ~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~------------~~~~~~-~~~~~~WspDg~~l~y~~~ 197 (732)
...+...+|||.|..|+.++ |+ .+..|+|-++-+... .+.+.+ ....-+|.|+.+..|.++.
T Consensus 214 ~h~i~sl~ys~Tg~~iLvvs---g~--aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s 288 (641)
T KOG0772|consen 214 THQINSLQYSVTGDQILVVS---GS--AQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCS 288 (641)
T ss_pred ccccceeeecCCCCeEEEEe---cC--cceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEec
Confidence 44678999999999998774 44 477778876543221 122211 2356789999999888864
Q ss_pred cCCCCCCCCCCCCcccCCcccEEEEEECCCCCCCCeEEEecCCCCe--eEEEeEEecCCcEEEEEEecCCcceEEEEEEe
Q 004766 198 PAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPK--YIFSGHVTEDGQYLVMCIEENCDPVNKVYYCD 275 (732)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~--~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d 275 (732)
. ...+..|++.....+..++-..+.... .....+|+|||++|+....++. |-+|+
T Consensus 289 ~------------------DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGS-----IQ~W~ 345 (641)
T KOG0772|consen 289 Y------------------DGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGS-----IQIWD 345 (641)
T ss_pred C------------------CCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCc-----eeeee
Confidence 3 335777787655544333322222211 2347789999999876665443 55556
Q ss_pred CCCCCCCcccccccCCCCCcEEeeecc----cceEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCC----ceEeccCC
Q 004766 276 LSALPEGLEGFKKRDGLLPFVKLIDGF----DAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPND----WFEVIPEA 347 (732)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~----~~~l~~~~ 347 (732)
..+.. ..+...+.... +.....||.||+.|+-.+. ...|-++||...+. +.-|...
T Consensus 346 ~~~~~-----------v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~----D~tLKvWDLrq~kkpL~~~tgL~t~- 409 (641)
T KOG0772|consen 346 KGSRT-----------VRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGF----DDTLKVWDLRQFKKPLNVRTGLPTP- 409 (641)
T ss_pred cCCcc-----------cccceEeeeccCCCCceeEEEeccccchhhhccC----CCceeeeeccccccchhhhcCCCcc-
Confidence 53311 11111222111 1122358999998774333 33578888877651 2222111
Q ss_pred CCCceeEEEEecCCEEEEEEecC----CeeEEEEEeCCCCceeeecccccceeeEeecccCCcEEEEEEec
Q 004766 348 ERDVLESATAVNLNQMIVSYLSD----VKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTS 414 (732)
Q Consensus 348 ~~~~l~~~~~~~~~~l~~~~~~~----g~~~l~~~d~~~g~~~~~l~~~~g~v~~~~~s~d~~~l~~~~ss 414 (732)
..-.+..+++++.|+++...- +...|+.+|..+=+.+.+|..+..+|....|.|.=+.+++....
T Consensus 410 --~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgd 478 (641)
T KOG0772|consen 410 --FPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGD 478 (641)
T ss_pred --CCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecCC
Confidence 223467788888888876542 23578888876555556776665566666777776666654433
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=4.9e-06 Score=92.86 Aligned_cols=172 Identities=12% Similarity=0.092 Sum_probs=101.6
Q ss_pred EEEeEEECCCCcEEEEEEec---cCCceEEEEEEECCCCceecccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCC
Q 004766 133 ALIKVSVSEDAKYLAYALSY---SGSDWATIKLMRIEDQIVEADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAG 209 (732)
Q Consensus 133 ~~~~~~~SPDG~~la~~~~~---~G~e~~~i~v~dl~~g~~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~ 209 (732)
.+..+++||||+++||+... .++...+||+.+. +|...+.+... ..+.++|||||+.|+|++..... .
T Consensus 351 ~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~~~lt~g~-~~t~PsWspDG~~lw~v~dg~~~-------~ 421 (591)
T PRK13616 351 NITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVAVQVLEGH-SLTRPSWSLDADAVWVVVDGNTV-------V 421 (591)
T ss_pred CcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcceeeecCC-CCCCceECCCCCceEEEecCcce-------E
Confidence 46789999999999999842 1223569999997 44333322222 24789999999999998643210 0
Q ss_pred CcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEE---EeCCCCCCCcccc
Q 004766 210 TETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYY---CDLSALPEGLEGF 286 (732)
Q Consensus 210 ~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~---~d~~~~~~~~~~~ 286 (732)
.........++|...+..+.... .. ..-+.++.|||||++|++... .+||+ ...++|...
T Consensus 422 ~v~~~~~~gql~~~~vd~ge~~~----~~---~g~Issl~wSpDG~RiA~i~~------g~v~Va~Vvr~~~G~~~---- 484 (591)
T PRK13616 422 RVIRDPATGQLARTPVDASAVAS----RV---PGPISELQLSRDGVRAAMIIG------GKVYLAVVEQTEDGQYA---- 484 (591)
T ss_pred EEeccCCCceEEEEeccCchhhh----cc---CCCcCeEEECCCCCEEEEEEC------CEEEEEEEEeCCCCcee----
Confidence 00001123467777776543321 11 123568999999999999872 25777 443443211
Q ss_pred cccCCCCCcEEeeecccc--eEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCC
Q 004766 287 KKRDGLLPFVKLIDGFDA--QYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPN 338 (732)
Q Consensus 287 ~~~~~~~~~~~l~~~~~~--~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~ 338 (732)
....+.+...... .-..|..++. |++.+.. ....++.+++++..
T Consensus 485 -----l~~~~~l~~~l~~~~~~l~W~~~~~-L~V~~~~--~~~~v~~v~vDG~~ 530 (591)
T PRK13616 485 -----LTNPREVGPGLGDTAVSLDWRTGDS-LVVGRSD--PEHPVWYVNLDGSN 530 (591)
T ss_pred -----ecccEEeecccCCccccceEecCCE-EEEEecC--CCCceEEEecCCcc
Confidence 1112334433322 1124887665 6666543 34568999998765
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=98.52 E-value=5.4e-06 Score=79.50 Aligned_cols=102 Identities=17% Similarity=0.166 Sum_probs=68.1
Q ss_pred EEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCccc
Q 004766 134 LIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETD 213 (732)
Q Consensus 134 ~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~ 213 (732)
+..++|||+|+++|.+.. .-...|.++|+++...... +......+.|||+|+.|+......
T Consensus 62 I~~~~WsP~g~~favi~g---~~~~~v~lyd~~~~~i~~~--~~~~~n~i~wsP~G~~l~~~g~~n-------------- 122 (194)
T PF08662_consen 62 IHDVAWSPNGNEFAVIYG---SMPAKVTLYDVKGKKIFSF--GTQPRNTISWSPDGRFLVLAGFGN-------------- 122 (194)
T ss_pred eEEEEECcCCCEEEEEEc---cCCcccEEEcCcccEeEee--cCCCceEEEECCCCCEEEEEEccC--------------
Confidence 779999999999998853 2223789999973333222 122236799999999999876432
Q ss_pred CCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEe
Q 004766 214 SNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIE 262 (732)
Q Consensus 214 ~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~ 262 (732)
....|.+|++.+. ..+... +.. ....+.|||||++++....
T Consensus 123 --~~G~l~~wd~~~~----~~i~~~-~~~-~~t~~~WsPdGr~~~ta~t 163 (194)
T PF08662_consen 123 --LNGDLEFWDVRKK----KKISTF-EHS-DATDVEWSPDGRYLATATT 163 (194)
T ss_pred --CCcEEEEEECCCC----EEeecc-ccC-cEEEEEEcCCCCEEEEEEe
Confidence 2245888887732 133322 222 3468899999999987653
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=98.52 E-value=3.4e-06 Score=86.89 Aligned_cols=192 Identities=16% Similarity=0.120 Sum_probs=105.6
Q ss_pred CCCCEEEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCc-eec------ccccceeeeeEEEEeCCcEEEEEEecCC
Q 004766 128 DDGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQI-VEA------DALSWFKFSSIAWTHDSKGFFYSRYPAP 200 (732)
Q Consensus 128 ~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~-~~~------~~~~~~~~~~~~WspDg~~l~y~~~~~~ 200 (732)
+++...+..-.|.|+.+-...+.+.+| ++++||+..-+ .+. .....+.....+|+|||+.|+-...++
T Consensus 265 KGHia~lt~g~whP~~k~~FlT~s~Dg----tlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DG- 339 (641)
T KOG0772|consen 265 KGHIAELTCGCWHPDNKEEFLTCSYDG----TLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDG- 339 (641)
T ss_pred CCceeeeeccccccCcccceEEecCCC----cEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCC-
Confidence 344566788899999998888876554 78999987543 221 112223346789999999988766544
Q ss_pred CCCCCCCCCCcccCCcccEEEEEECCCCCCCCeEEEecCCCC-eeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCC
Q 004766 201 KEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHP-KYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSAL 279 (732)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~-~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~ 279 (732)
.|-.|+.+.....-...+.....+ .-+.++.||+||++|+-.+.+ ..+-+|||...
T Consensus 340 ------------------SIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D-----~tLKvWDLrq~ 396 (641)
T KOG0772|consen 340 ------------------SIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFD-----DTLKVWDLRQF 396 (641)
T ss_pred ------------------ceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCC-----Cceeeeecccc
Confidence 244555543322222222211111 235689999999999755433 33777787753
Q ss_pred CCCcccccccCCCCCcEEeeecccceEEEEEecCCeEEEEeCC---CCCCceEEEEeCCCCCCceEeccCCCCCceeEEE
Q 004766 280 PEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNK---DAPKYKIIRVDLKEPNDWFEVIPEAERDVLESAT 356 (732)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~---~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~ 356 (732)
...+ ..+..|...+...-..||||.+ |++.... +.....|+.+|..+-.....+. -. ...+..+.
T Consensus 397 kkpL---------~~~tgL~t~~~~tdc~FSPd~k-li~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~-i~-~aSvv~~~ 464 (641)
T KOG0772|consen 397 KKPL---------NVRTGLPTPFPGTDCCFSPDDK-LILTGTSAPNGMTAGTLFFFDRMTLDTVYKID-IS-TASVVRCL 464 (641)
T ss_pred ccch---------hhhcCCCccCCCCccccCCCce-EEEecccccCCCCCceEEEEeccceeeEEEec-CC-CceEEEEe
Confidence 2100 0122333334333456999765 4433221 1123467777765543222221 11 24444556
Q ss_pred Eec
Q 004766 357 AVN 359 (732)
Q Consensus 357 ~~~ 359 (732)
|.+
T Consensus 465 Whp 467 (641)
T KOG0772|consen 465 WHP 467 (641)
T ss_pred ecc
Confidence 655
|
|
| >KOG3847 consensus Phospholipase A2 (platelet-activating factor acetylhydrolase in humans) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.51 E-value=3.9e-06 Score=81.70 Aligned_cols=125 Identities=20% Similarity=0.232 Sum_probs=76.8
Q ss_pred eeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCC--------------Cchh
Q 004766 463 TKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGE--------------YGEE 528 (732)
Q Consensus 463 ~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~--------------~g~~ 528 (732)
.++|+..-.|-.. +++++|+||+.||-.+++ ..|+.-... |+++||+|+++..|-... +-+.
T Consensus 101 ~r~~~~~n~~~~t-k~~k~PvvvFSHGLggsR--t~YSa~c~~-LAShG~VVaavEHRD~SA~~Ty~~~~~~~n~~lveq 176 (399)
T KOG3847|consen 101 KRVPCIENAPLST-KNDKYPVVVFSHGLGGSR--TLYSAYCTS-LASHGFVVAAVEHRDRSACWTYVLKEKHENEPLVEQ 176 (399)
T ss_pred ccccccccCCCCC-CCCCccEEEEecccccch--hhHHHHhhh-HhhCceEEEEeecccCcceeEEEecccccCCccccc
Confidence 4555543333322 368999999999987764 245544444 455999999999996532 2233
Q ss_pred HHhcccc--cCC----cc-----HHHHHHHHHHHHHH---------------------cCCCCCCcEEEEecChhHHHHH
Q 004766 529 WHKGGAL--AKK----QN-----CFDDFISASEYLIS---------------------AGYTQSRKLCIEGGSNGGLLVG 576 (732)
Q Consensus 529 ~~~~~~~--~~~----~~-----~~~D~~~~~~~l~~---------------------~~~~d~~~i~i~G~S~GG~l~~ 576 (732)
|..--.. .-+ +| ..+.+..|++-|.+ ++-+|.++++++|||.||..++
T Consensus 177 ~~~ir~v~~~ekef~irNeqv~~R~~Ec~~aL~il~~i~~g~~~~~~L~g~~~~~~~~K~nl~~s~~aViGHSFGgAT~i 256 (399)
T KOG3847|consen 177 WIKIRLVEANEKEFHIRNEQVGQRAQECQKALKILEQINDGGTPDNVLPGNNSDLEQLKGNLDTSQAAVIGHSFGGATSI 256 (399)
T ss_pred ceEeeeeccCceeEEeeCHHHHHHHHHHHHHHHHHHHhhcCCCchhcccCccccHHHHhcchhhhhhhheeccccchhhh
Confidence 3321110 111 01 12344444443332 2346788999999999999998
Q ss_pred HHHhhCCCeeeEEEEc
Q 004766 577 ACINQRPDLFGCALAH 592 (732)
Q Consensus 577 ~~~~~~p~~f~a~v~~ 592 (732)
+....+ ..|+|+|+.
T Consensus 257 ~~ss~~-t~FrcaI~l 271 (399)
T KOG3847|consen 257 ASSSSH-TDFRCAIAL 271 (399)
T ss_pred hhhccc-cceeeeeee
Confidence 888763 579999864
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.3e-05 Score=79.23 Aligned_cols=247 Identities=15% Similarity=0.098 Sum_probs=151.8
Q ss_pred CCEEEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCc-eec-ccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCC
Q 004766 130 GTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQI-VEA-DALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMD 207 (732)
Q Consensus 130 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~-~~~-~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~ 207 (732)
+.-++..++++..|++||-.+ ....+.+||.++-. .+. ........+.+.+-|-|..|+-.+
T Consensus 149 Ht~sv~di~~~a~Gk~l~tcS-----sDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~s----------- 212 (406)
T KOG0295|consen 149 HTDSVFDISFDASGKYLATCS-----SDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCS----------- 212 (406)
T ss_pred cccceeEEEEecCccEEEecC-----CccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecc-----------
Confidence 345688899999999888553 22458889987632 111 111111248899999998887654
Q ss_pred CCCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcc-cc
Q 004766 208 AGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLE-GF 286 (732)
Q Consensus 208 ~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~-~~ 286 (732)
+...|..|++.++- +++.-+.++.|+..+..+-||..++-.+++ +.|.++.++++.+..+ +.
T Consensus 213 --------rD~tik~We~~tg~----cv~t~~~h~ewvr~v~v~~DGti~As~s~d-----qtl~vW~~~t~~~k~~lR~ 275 (406)
T KOG0295|consen 213 --------RDNTIKAWECDTGY----CVKTFPGHSEWVRMVRVNQDGTIIASCSND-----QTLRVWVVATKQCKAELRE 275 (406)
T ss_pred --------cccceeEEecccce----eEEeccCchHhEEEEEecCCeeEEEecCCC-----ceEEEEEeccchhhhhhhc
Confidence 44468889988764 455555556688888999999887655432 3455666666533210 00
Q ss_pred cccCCCCCcEEeeecccceEEEE---Ee--cCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecCC
Q 004766 287 KKRDGLLPFVKLIDGFDAQYEVI---AN--DDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLN 361 (732)
Q Consensus 287 ~~~~~~~~~~~l~~~~~~~~~~~---s~--dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~ 361 (732)
+ ..+.+.+.-.....++.+ .+ +|..+.+...++ ..+-.+|+.++...-+|..+. ..+.++.+++++
T Consensus 276 h----Eh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrD---ktIk~wdv~tg~cL~tL~ghd--nwVr~~af~p~G 346 (406)
T KOG0295|consen 276 H----EHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRD---KTIKIWDVSTGMCLFTLVGHD--NWVRGVAFSPGG 346 (406)
T ss_pred c----ccceEEEEecccccCcchhhccCCCCCccEEEeeccc---ceEEEEeccCCeEEEEEeccc--ceeeeeEEcCCC
Confidence 0 111111111111111111 11 233444443333 356778888887677787776 668899999878
Q ss_pred EEEEEEecCCeeEEEEEeCCCCceeeecccccceeeEeecccCCcEEEEEEecCCCCceEE
Q 004766 362 QMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVY 422 (732)
Q Consensus 362 ~l~~~~~~~g~~~l~~~d~~~g~~~~~l~~~~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y 422 (732)
+.+++..+|+ .|.+||+.+++....+..+...+..+++..+.. ++...+..++..++
T Consensus 347 kyi~ScaDDk--tlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p--~VvTGsVdqt~Kvw 403 (406)
T KOG0295|consen 347 KYILSCADDK--TLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAP--YVVTGSVDQTVKVW 403 (406)
T ss_pred eEEEEEecCC--cEEEEEeccceeeeccCCCcceeEEEecCCCCc--eEEeccccceeeee
Confidence 8888888884 788999998887777776677777777654444 44445555554443
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=0.00015 Score=79.76 Aligned_cols=243 Identities=11% Similarity=0.040 Sum_probs=129.8
Q ss_pred ECCCCcEEEEEEeccCCceEEEEEEECCCCceec----ccccceeeeeEEEEe-CCcEEEEEEecCCCCCCCCCCCCccc
Q 004766 139 VSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEA----DALSWFKFSSIAWTH-DSKGFFYSRYPAPKEGKDMDAGTETD 213 (732)
Q Consensus 139 ~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~----~~~~~~~~~~~~Wsp-Dg~~l~y~~~~~~~~~~~~~~~~~~~ 213 (732)
++.+.+++|+..+..|. ...+..-+.|+... .......+..++|+| |++.|+..+.+
T Consensus 36 ~~~n~~~~a~~w~~~gg---~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~D--------------- 97 (493)
T PTZ00421 36 IACNDRFIAVPWQQLGS---TAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASED--------------- 97 (493)
T ss_pred EeECCceEEEEEecCCc---eEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCC---------------
Confidence 56677788887765553 12222223444221 011112347899999 88877766433
Q ss_pred CCcccEEEEEECCCCCC-----CCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccc
Q 004766 214 SNLYHEFYYHFLGTKQS-----EDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKK 288 (732)
Q Consensus 214 ~~~~~~v~~~~lgt~~~-----~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~ 288 (732)
..|.+|++.++.. ..+..+.. +...+..+.|+|++..++++++. ...|.++|+.++.
T Consensus 98 ----gtIkIWdi~~~~~~~~~~~~l~~L~g--H~~~V~~l~f~P~~~~iLaSgs~----DgtVrIWDl~tg~-------- 159 (493)
T PTZ00421 98 ----GTIMGWGIPEEGLTQNISDPIVHLQG--HTKKVGIVSFHPSAMNVLASAGA----DMVVNVWDVERGK-------- 159 (493)
T ss_pred ----CEEEEEecCCCccccccCcceEEecC--CCCcEEEEEeCcCCCCEEEEEeC----CCEEEEEECCCCe--------
Confidence 3688888865421 11222222 23345688999997544444432 2347888987642
Q ss_pred cCCCCCcEEeeecccceE-EEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecCCEEEEEE
Q 004766 289 RDGLLPFVKLIDGFDAQY-EVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSY 367 (732)
Q Consensus 289 ~~~~~~~~~l~~~~~~~~-~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~~l~~~~ 367 (732)
....+....+... ..|+|+|..|+..+. +..|..+|+.++.....+..+. ......+.|.+++..+++.
T Consensus 160 -----~~~~l~~h~~~V~sla~spdG~lLatgs~----Dg~IrIwD~rsg~~v~tl~~H~-~~~~~~~~w~~~~~~ivt~ 229 (493)
T PTZ00421 160 -----AVEVIKCHSDQITSLEWNLDGSLLCTTSK----DKKLNIIDPRDGTIVSSVEAHA-SAKSQRCLWAKRKDLIITL 229 (493)
T ss_pred -----EEEEEcCCCCceEEEEEECCCCEEEEecC----CCEEEEEECCCCcEEEEEecCC-CCcceEEEEcCCCCeEEEE
Confidence 1222222222112 248999887664332 3468889998776444444443 2233345566543444433
Q ss_pred e-c-CCeeEEEEEeCCCCc-eeeecccc-cceeeEeecccCCcEEEEEEecCCCCceEEEEECCCCC
Q 004766 368 L-S-DVKYVLQIRDLKNGS-LLHQLPIE-IGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 430 (732)
Q Consensus 368 ~-~-~g~~~l~~~d~~~g~-~~~~l~~~-~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~~ 430 (732)
. . .....|.+||+.+.. ....+... ...+....++++++.+++...+ -..+..||+.+++
T Consensus 230 G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkg---Dg~Iriwdl~~~~ 293 (493)
T PTZ00421 230 GCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKG---EGNIRCFELMNER 293 (493)
T ss_pred ecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeC---CCeEEEEEeeCCc
Confidence 2 1 223579999986543 22222222 1223334567788866654322 2468888887764
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=98.49 E-value=7.2e-05 Score=77.51 Aligned_cols=205 Identities=12% Similarity=0.096 Sum_probs=110.4
Q ss_pred eEEECCCCcEEEEEEeccCCceEEEEEEECCCCceeccc-ccceeeeeEEE--------EeCCcEEEEEEecCCCCCCCC
Q 004766 136 KVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADA-LSWFKFSSIAW--------THDSKGFFYSRYPAPKEGKDM 206 (732)
Q Consensus 136 ~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~-~~~~~~~~~~W--------spDg~~l~y~~~~~~~~~~~~ 206 (732)
.+.+|||||+|.+. +... ...+-|+|+++++.+.+. ..++. .-+.+ +.||+.+.++....
T Consensus 109 ~~~ls~dgk~l~V~-n~~p--~~~V~VvD~~~~kvv~ei~vp~~~-~vy~t~e~~~~~~~~Dg~~~~v~~d~~------- 177 (352)
T TIGR02658 109 MTSLTPDNKTLLFY-QFSP--SPAVGVVDLEGKAFVRMMDVPDCY-HIFPTANDTFFMHCRDGSLAKVGYGTK------- 177 (352)
T ss_pred eEEECCCCCEEEEe-cCCC--CCEEEEEECCCCcEEEEEeCCCCc-EEEEecCCccEEEeecCceEEEEecCC-------
Confidence 68899999987644 3332 257899999999876422 22221 22333 34444333332111
Q ss_pred CCCCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEec-CCcEEEEEEecCCcceEEEEEEeCCCCCCCccc
Q 004766 207 DAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTE-DGQYLVMCIEENCDPVNKVYYCDLSALPEGLEG 285 (732)
Q Consensus 207 ~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~ 285 (732)
+. +. .....+|...+.+ .+..+.+++ ||++++.+. . ..++++|+++.....
T Consensus 178 --------g~---~~--------~~~~~vf~~~~~~-v~~rP~~~~~dg~~~~vs~-e-----G~V~~id~~~~~~~~-- 229 (352)
T TIGR02658 178 --------GN---PK--------IKPTEVFHPEDEY-LINHPAYSNKSGRLVWPTY-T-----GKIFQIDLSSGDAKF-- 229 (352)
T ss_pred --------Cc---eE--------EeeeeeecCCccc-cccCCceEcCCCcEEEEec-C-----CeEEEEecCCCccee--
Confidence 00 11 0111222211111 112334566 887775543 2 459999976532110
Q ss_pred ccccCCCCCcEEeee-----cccce---EEEEEecCCeEEEEeCCC------CCCceEEEEeCCCCCCceEeccCCCCCc
Q 004766 286 FKKRDGLLPFVKLID-----GFDAQ---YEVIANDDTVFTFLTNKD------APKYKIIRVDLKEPNDWFEVIPEAERDV 351 (732)
Q Consensus 286 ~~~~~~~~~~~~l~~-----~~~~~---~~~~s~dg~~l~~~s~~~------~~~~~l~~~d~~~~~~~~~l~~~~~~~~ 351 (732)
..++..+.. ++... ...++++|+++|++.+.. .+...|+.+|+++.+....+ +-. ..
T Consensus 230 ------~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i-~vG--~~ 300 (352)
T TIGR02658 230 ------LPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKI-ELG--HE 300 (352)
T ss_pred ------cceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEE-eCC--Cc
Confidence 111222111 11111 134788999999866421 22357999999888733333 222 34
Q ss_pred eeEEEEecCCE-EEEEEecCCeeEEEEEeCCCCceeeec
Q 004766 352 LESATAVNLNQ-MIVSYLSDVKYVLQIRDLKNGSLLHQL 389 (732)
Q Consensus 352 l~~~~~~~~~~-l~~~~~~~g~~~l~~~d~~~g~~~~~l 389 (732)
..++.+++|++ +++..+.. ...|.++|.++++.++.+
T Consensus 301 ~~~iavS~Dgkp~lyvtn~~-s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 301 IDSINVSQDAKPLLYALSTG-DKTLYIFDAETGKELSSV 338 (352)
T ss_pred eeeEEECCCCCeEEEEeCCC-CCcEEEEECcCCeEEeee
Confidence 67788998755 55544432 356999999988877777
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.49 E-value=2.2e-05 Score=80.29 Aligned_cols=249 Identities=10% Similarity=0.075 Sum_probs=147.2
Q ss_pred EEEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecccccceeeeeEEEEeCCcEEEEEEecCCCCCC-------
Q 004766 132 AALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGK------- 204 (732)
Q Consensus 132 ~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~------- 204 (732)
..+..+.|+-||..||+.. +...+++|+..++...........+.++.|..+|.+|+-...+..-...
T Consensus 236 kdVT~L~Wn~~G~~LatG~-----~~G~~riw~~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~ 310 (524)
T KOG0273|consen 236 KDVTSLDWNNDGTLLATGS-----EDGEARIWNKDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTV 310 (524)
T ss_pred CCcceEEecCCCCeEEEee-----cCcEEEEEecCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceE
Confidence 3477899999999999764 4458999998766544433333334789999999888876544321000
Q ss_pred --------------CCC-CCCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceE
Q 004766 205 --------------DMD-AGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVN 269 (732)
Q Consensus 205 --------------~~~-~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~ 269 (732)
+|- ..+..-+.....|++.+++...... -+.. +.+-+..+.|.|.|+.|+-.+.+. +-
T Consensus 311 ~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~--t~~G--H~g~V~alk~n~tg~LLaS~SdD~---Tl 383 (524)
T KOG0273|consen 311 KQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVK--TFIG--HHGEVNALKWNPTGSLLASCSDDG---TL 383 (524)
T ss_pred EEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcce--eeec--ccCceEEEEECCCCceEEEecCCC---ee
Confidence 010 0000001223346677776543322 1222 223355788999999887666443 34
Q ss_pred EEEEEeCCCCCCCcccccccCCCCCcEEeeecccceEE-EEEecCCe-------EEEEeCCCCCCceEEEEeCCCCCCce
Q 004766 270 KVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYE-VIANDDTV-------FTFLTNKDAPKYKIIRVDLKEPNDWF 341 (732)
Q Consensus 270 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~-------l~~~s~~~~~~~~l~~~d~~~~~~~~ 341 (732)
+||-+--.+ + ...+-......|. .|+|+|.- +.+++. ..+..|-.+|+..+.+..
T Consensus 384 kiWs~~~~~--~-------------~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sa--s~dstV~lwdv~~gv~i~ 446 (524)
T KOG0273|consen 384 KIWSMGQSN--S-------------VHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASA--SFDSTVKLWDVESGVPIH 446 (524)
T ss_pred EeeecCCCc--c-------------hhhhhhhccceeeEeecCCCCccCCCcCCceEEEe--ecCCeEEEEEccCCceeE
Confidence 455332111 1 1112111111222 36665431 111111 123457778888887666
Q ss_pred EeccCCCCCceeEEEEecCCEEEEEEecCCeeEEEEEeCCCCceeeecccccceeeEeecccCCcEEEEEEec
Q 004766 342 EVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTS 414 (732)
Q Consensus 342 ~l~~~~~~~~l~~~~~~~~~~l~~~~~~~g~~~l~~~d~~~g~~~~~l~~~~g~v~~~~~s~d~~~l~~~~ss 414 (732)
.+..+. ..+.++.++++++.+++...++ .|.+|+..+|+..+... ..+.|..+.++.+|+.+...++.
T Consensus 447 ~f~kH~--~pVysvafS~~g~ylAsGs~dg--~V~iws~~~~~l~~s~~-~~~~Ifel~Wn~~G~kl~~~~sd 514 (524)
T KOG0273|consen 447 TLMKHQ--EPVYSVAFSPNGRYLASGSLDG--CVHIWSTKTGKLVKSYQ-GTGGIFELCWNAAGDKLGACASD 514 (524)
T ss_pred eeccCC--CceEEEEecCCCcEEEecCCCC--eeEeccccchheeEeec-CCCeEEEEEEcCCCCEEEEEecC
Confidence 666776 6788899998777777777775 67888888888755554 45667788999999988776654
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.4e-06 Score=82.68 Aligned_cols=230 Identities=16% Similarity=0.176 Sum_probs=135.2
Q ss_pred EEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceeccc--ccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCc
Q 004766 134 LIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADA--LSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTE 211 (732)
Q Consensus 134 ~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~--~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~ 211 (732)
+-.+.||-|...|| .|+....|.||.++||..+... ...-....+.||.|++.|+-.+++
T Consensus 266 Vlci~FSRDsEMlA-----sGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD------------- 327 (508)
T KOG0275|consen 266 VLCISFSRDSEMLA-----SGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFD------------- 327 (508)
T ss_pred eEEEeecccHHHhh-----ccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhccccc-------------
Confidence 44677899988888 5566678999999999865311 111124789999999999876543
Q ss_pred ccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCC
Q 004766 212 TDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDG 291 (732)
Q Consensus 212 ~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 291 (732)
+.+..|-+.++. ++-+...+..|+....+++||.+|+-.+++++ +-+|+..+.++- ..
T Consensus 328 ------~tvRiHGlKSGK----~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgt-----vkvW~~KtteC~-~T------ 385 (508)
T KOG0275|consen 328 ------QTVRIHGLKSGK----CLKEFRGHSSYVNEATFTDDGHHIISASSDGT-----VKVWHGKTTECL-ST------ 385 (508)
T ss_pred ------ceEEEeccccch----hHHHhcCccccccceEEcCCCCeEEEecCCcc-----EEEecCcchhhh-hh------
Confidence 457777776654 23233345567778899999999987765544 556676664331 11
Q ss_pred CCCcEEeeecccceEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccC-CCCCceeEEEEecCCEEEEEEecC
Q 004766 292 LLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPE-AERDVLESATAVNLNQMIVSYLSD 370 (732)
Q Consensus 292 ~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~-~~~~~l~~~~~~~~~~l~~~~~~~ 370 (732)
++.+-.+........-|.+..-++++|+. ..+|.+++.+.. .+..... ++....-...+++.+..++...++
T Consensus 386 ---fk~~~~d~~vnsv~~~PKnpeh~iVCNrs---ntv~imn~qGQv-VrsfsSGkREgGdFi~~~lSpkGewiYcigED 458 (508)
T KOG0275|consen 386 ---FKPLGTDYPVNSVILLPKNPEHFIVCNRS---NTVYIMNMQGQV-VRSFSSGKREGGDFINAILSPKGEWIYCIGED 458 (508)
T ss_pred ---ccCCCCcccceeEEEcCCCCceEEEEcCC---CeEEEEeccceE-EeeeccCCccCCceEEEEecCCCcEEEEEccC
Confidence 11221111111112335444445567764 368899887653 3333322 222233344555534444444455
Q ss_pred CeeEEEEEeCCCCceeeecccccceeeEeecccCCcEEEEEEe
Q 004766 371 VKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFT 413 (732)
Q Consensus 371 g~~~l~~~d~~~g~~~~~l~~~~g~v~~~~~s~d~~~l~~~~s 413 (732)
..+|-+...+|+..+.++.....+-+++..|..+ ++.+|+
T Consensus 459 --~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqN-llAsYs 498 (508)
T KOG0275|consen 459 --GVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQN-LLASYS 498 (508)
T ss_pred --cEEEEEEeecCceeeeeecccccccccccCcccc-hhhhhc
Confidence 3688888878887566665544444666666655 333443
|
|
| >KOG2382 consensus Predicted alpha/beta hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.47 E-value=2.9e-06 Score=84.61 Aligned_cols=228 Identities=13% Similarity=0.075 Sum_probs=124.6
Q ss_pred CeeEEEEEEE-cCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCcc
Q 004766 462 STKIPMFIVS-KKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQN 540 (732)
Q Consensus 462 ~~~i~~~~~~-p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~ 540 (732)
+++++.-+++ ..+ -.+.|.++.+||-+|+.. .|..--..+-...|--++.+|.|..|..-.. ....+..
T Consensus 35 p~~l~y~~~~~~~~---~~~~Pp~i~lHGl~GS~~--Nw~sv~k~Ls~~l~~~v~~vd~RnHG~Sp~~-----~~h~~~~ 104 (315)
T KOG2382|consen 35 PVRLAYDSVYSSEN---LERAPPAIILHGLLGSKE--NWRSVAKNLSRKLGRDVYAVDVRNHGSSPKI-----TVHNYEA 104 (315)
T ss_pred Ccccceeeeecccc---cCCCCceEEecccccCCC--CHHHHHHHhcccccCceEEEecccCCCCccc-----cccCHHH
Confidence 3566666653 222 368899999999999863 3332222333445778999999988764211 1112233
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcEEEEecChhH-HHHHHHHhhCCCeeeEEEE-c-CCc-cc--------ccccc---cCC
Q 004766 541 CFDDFISASEYLISAGYTQSRKLCIEGGSNGG-LLVGACINQRPDLFGCALA-H-VGV-MD--------MLRYH---KFT 605 (732)
Q Consensus 541 ~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG-~l~~~~~~~~p~~f~a~v~-~-~p~-~d--------~~~~~---~~~ 605 (732)
..+|+...++...... --.++.|.|||||| -++++....+|++..-+|+ . +|- +. ++.++ ...
T Consensus 105 ma~dv~~Fi~~v~~~~--~~~~~~l~GHsmGG~~~~m~~t~~~p~~~~rliv~D~sP~~~~~~~~e~~e~i~~m~~~d~~ 182 (315)
T KOG2382|consen 105 MAEDVKLFIDGVGGST--RLDPVVLLGHSMGGVKVAMAETLKKPDLIERLIVEDISPGGVGRSYGEYRELIKAMIQLDLS 182 (315)
T ss_pred HHHHHHHHHHHccccc--ccCCceecccCcchHHHHHHHHHhcCcccceeEEEecCCccCCcccchHHHHHHHHHhcccc
Confidence 3445555444443322 23579999999999 5555555567887544443 2 331 10 00011 000
Q ss_pred ----CCCc-----------------cc------------ccc-CCC-CCHHHHHHHHhcCcccCCCCCCCCCCCCCCCCC
Q 004766 606 ----IGHA-----------------WV------------SDF-GCS-EEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYP 650 (732)
Q Consensus 606 ----~~~~-----------------~~------------~~~-g~p-~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~ 650 (732)
.+.. |. ..| ++. ...+.+..+...++-...... ....
T Consensus 183 ~~~~~~rke~~~~l~~~~~d~~~~~fi~~nl~~~~~~~s~~w~~nl~~i~~~~~~~~~~s~~~~l~~~--------~~~~ 254 (315)
T KOG2382|consen 183 IGVSRGRKEALKSLIEVGFDNLVRQFILTNLKKSPSDGSFLWRVNLDSIASLLDEYEILSYWADLEDG--------PYTG 254 (315)
T ss_pred ccccccHHHHHHHHHHHhcchHHHHHHHHhcCcCCCCCceEEEeCHHHHHHHHHHHHhhccccccccc--------cccc
Confidence 0000 00 001 011 011222332233332222211 3678
Q ss_pred eEEEEeeCCCCCCCchHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeCCCCCCCCCchHHHHHHHHHHHHHHHHH
Q 004766 651 STLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKM 725 (732)
Q Consensus 651 p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~ 725 (732)
|+|+++|.++..|+..+-..+.... ..++++..+++||+...+..+ +....+.+|+..+
T Consensus 255 pvlfi~g~~S~fv~~~~~~~~~~~f--------------p~~e~~~ld~aGHwVh~E~P~--~~~~~i~~Fl~~~ 313 (315)
T KOG2382|consen 255 PVLFIKGLQSKFVPDEHYPRMEKIF--------------PNVEVHELDEAGHWVHLEKPE--EFIESISEFLEEP 313 (315)
T ss_pred ceeEEecCCCCCcChhHHHHHHHhc--------------cchheeecccCCceeecCCHH--HHHHHHHHHhccc
Confidence 9999999999999987644443332 237999999999998765543 4555667787654
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.47 E-value=0.00026 Score=70.79 Aligned_cols=255 Identities=15% Similarity=0.152 Sum_probs=129.5
Q ss_pred EEEEEEEcCCCCeeEEEEEeCCCCCceEEeCCCCcCCCCCEEEEeEEECCCCcEEEEEEeccCCceEEEEEEECCC-Cce
Q 004766 92 KYFYFHNTGLQPQSVLYVQDSLDAKAKVLLDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIED-QIV 170 (732)
Q Consensus 92 ~~~~~~~~~~~~~~~l~~r~~~~~~~~~l~D~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~-g~~ 170 (732)
.+|-.-+.+....-.-|..+..+|. -.+++...+..... ..+++++||++|.-+ +..+ ..|.|..+.. |..
T Consensus 53 ~LY~v~~~~~~ggvaay~iD~~~G~-Lt~ln~~~~~g~~p---~yvsvd~~g~~vf~A-nY~~---g~v~v~p~~~dG~l 124 (346)
T COG2706 53 HLYVVNEPGEEGGVAAYRIDPDDGR-LTFLNRQTLPGSPP---CYVSVDEDGRFVFVA-NYHS---GSVSVYPLQADGSL 124 (346)
T ss_pred EEEEEEecCCcCcEEEEEEcCCCCe-EEEeeccccCCCCC---eEEEECCCCCEEEEE-EccC---ceEEEEEcccCCcc
Confidence 3443333433333334555433333 34444443332233 367899999977544 4333 2577777743 442
Q ss_pred ecc-----cccc--------eeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCCcccEEEEEECCCCCCCCeEEEe
Q 004766 171 EAD-----ALSW--------FKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWK 237 (732)
Q Consensus 171 ~~~-----~~~~--------~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~ 237 (732)
... ..+. .......+.||++.|+.... ...+|+.+++..+.-+....+.
T Consensus 125 ~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DL------------------G~Dri~~y~~~dg~L~~~~~~~ 186 (346)
T COG2706 125 QPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDL------------------GTDRIFLYDLDDGKLTPADPAE 186 (346)
T ss_pred ccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeec------------------CCceEEEEEcccCccccccccc
Confidence 110 0000 01245678999998887632 2336777777654322111111
Q ss_pred cCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCCCCcEEeeecccce----EEEEEecC
Q 004766 238 DPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQ----YEVIANDD 313 (732)
Q Consensus 238 ~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~s~dg 313 (732)
.+...+ -..+.|.|+||++.+...-.. +-.+|-++-..++ ++.+ +....+-.++... --.+++||
T Consensus 187 v~~G~G-PRHi~FHpn~k~aY~v~EL~s--tV~v~~y~~~~g~--~~~l------Q~i~tlP~dF~g~~~~aaIhis~dG 255 (346)
T COG2706 187 VKPGAG-PRHIVFHPNGKYAYLVNELNS--TVDVLEYNPAVGK--FEEL------QTIDTLPEDFTGTNWAAAIHISPDG 255 (346)
T ss_pred cCCCCC-cceEEEcCCCcEEEEEeccCC--EEEEEEEcCCCce--EEEe------eeeccCccccCCCCceeEEEECCCC
Confidence 111111 136789999999876653322 3445555543322 1000 0011122222221 11378998
Q ss_pred CeEEEEeCCCCCCceEEEEeCCCCC-CceEeccCCCCCceeEEEEecCCEEEEEEecCC-eeEEEEEeCCCCce
Q 004766 314 TVFTFLTNKDAPKYKIIRVDLKEPN-DWFEVIPEAERDVLESATAVNLNQMIVSYLSDV-KYVLQIRDLKNGSL 385 (732)
Q Consensus 314 ~~l~~~s~~~~~~~~l~~~d~~~~~-~~~~l~~~~~~~~l~~~~~~~~~~l~~~~~~~g-~~~l~~~d~~~g~~ 385 (732)
+.|| .+|++.....++.+|..++. .....++ .+...-.+|.+.+++.+++...+++ .-.++..|.++|+.
T Consensus 256 rFLY-asNRg~dsI~~f~V~~~~g~L~~~~~~~-teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L 327 (346)
T COG2706 256 RFLY-ASNRGHDSIAVFSVDPDGGKLELVGITP-TEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRL 327 (346)
T ss_pred CEEE-EecCCCCeEEEEEEcCCCCEEEEEEEec-cCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceE
Confidence 7665 78988766777888877765 1111122 1223346778877555444444443 34667777777765
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=98.43 E-value=6.9e-06 Score=89.08 Aligned_cols=195 Identities=11% Similarity=0.073 Sum_probs=120.7
Q ss_pred EEEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecc-cccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCC
Q 004766 132 AALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEAD-ALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGT 210 (732)
Q Consensus 132 ~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~-~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~ 210 (732)
..+.+.+||||.++|. +.+|..++++|.+.+-..+.. ..+......+.|+|-| .||++.-
T Consensus 452 GPVyg~sFsPd~rfLl-----ScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~G--yYFatas------------ 512 (707)
T KOG0263|consen 452 GPVYGCSFSPDRRFLL-----SCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRG--YYFATAS------------ 512 (707)
T ss_pred Cceeeeeeccccccee-----eccCCcceeeeecccceeEEEecCCCcceeeEEecCCc--eEEEecC------------
Confidence 3467889999999887 335667899999988764322 2222223567889876 4444321
Q ss_pred cccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccC
Q 004766 211 ETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRD 290 (732)
Q Consensus 211 ~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~ 290 (732)
......+|......... +|.+.-.+ +.-+.|.|++.|++-.+.+ ..+.+||..+|.
T Consensus 513 -----~D~tArLWs~d~~~PlR--ifaghlsD--V~cv~FHPNs~Y~aTGSsD-----~tVRlWDv~~G~---------- 568 (707)
T KOG0263|consen 513 -----HDQTARLWSTDHNKPLR--IFAGHLSD--VDCVSFHPNSNYVATGSSD-----RTVRLWDVSTGN---------- 568 (707)
T ss_pred -----CCceeeeeecccCCchh--hhcccccc--cceEEECCcccccccCCCC-----ceEEEEEcCCCc----------
Confidence 11122333333322222 33222111 1237899999998755432 336677877653
Q ss_pred CCCCcEEeeecccceEE--EEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecCCEEEEEEe
Q 004766 291 GLLPFVKLIDGFDAQYE--VIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYL 368 (732)
Q Consensus 291 ~~~~~~~l~~~~~~~~~--~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~~l~~~~~ 368 (732)
..++..+....+. .+||+|..|.- ++..+.|..+|+.++.....+..|. ..+.++.++.++.+++...
T Consensus 569 ----~VRiF~GH~~~V~al~~Sp~Gr~LaS----g~ed~~I~iWDl~~~~~v~~l~~Ht--~ti~SlsFS~dg~vLasgg 638 (707)
T KOG0263|consen 569 ----SVRIFTGHKGPVTALAFSPCGRYLAS----GDEDGLIKIWDLANGSLVKQLKGHT--GTIYSLSFSRDGNVLASGG 638 (707)
T ss_pred ----EEEEecCCCCceEEEEEcCCCceEee----cccCCcEEEEEcCCCcchhhhhccc--CceeEEEEecCCCEEEecC
Confidence 2344444433333 58999987663 2335679999999887556667774 6788899998777777766
Q ss_pred cCCeeEEEEEeCC
Q 004766 369 SDVKYVLQIRDLK 381 (732)
Q Consensus 369 ~~g~~~l~~~d~~ 381 (732)
.| ..|.+||+.
T Consensus 639 ~D--nsV~lWD~~ 649 (707)
T KOG0263|consen 639 AD--NSVRLWDLT 649 (707)
T ss_pred CC--CeEEEEEch
Confidence 55 578889975
|
|
| >TIGR01839 PHA_synth_II poly(R)-hydroxyalkanoic acid synthase, class II | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.1e-05 Score=87.47 Aligned_cols=83 Identities=17% Similarity=0.088 Sum_probs=59.1
Q ss_pred HHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCccHHHH----HHHHHHHHHHcCCCCCCcEEEEecChhHHHHHH-
Q 004766 503 RTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDD----FISASEYLISAGYTQSRKLCIEGGSNGGLLVGA- 577 (732)
Q Consensus 503 ~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D----~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~- 577 (732)
+..+|.++|+.|++++.|.-+... +..+++| +.+|++.+.+. +..++|-++|+|+||.+++.
T Consensus 239 lVr~lv~qG~~VflIsW~nP~~~~-----------r~~~ldDYv~~i~~Ald~V~~~--tG~~~vnl~GyC~GGtl~a~~ 305 (560)
T TIGR01839 239 FVQYCLKNQLQVFIISWRNPDKAH-----------REWGLSTYVDALKEAVDAVRAI--TGSRDLNLLGACAGGLTCAAL 305 (560)
T ss_pred HHHHHHHcCCeEEEEeCCCCChhh-----------cCCCHHHHHHHHHHHHHHHHHh--cCCCCeeEEEECcchHHHHHH
Confidence 455566699999999999865321 1223344 44556665544 55679999999999999886
Q ss_pred ---HHhhCCC-eeeEEEEcCCcccc
Q 004766 578 ---CINQRPD-LFGCALAHVGVMDM 598 (732)
Q Consensus 578 ---~~~~~p~-~f~a~v~~~p~~d~ 598 (732)
+++++++ +.+.++..+..+|.
T Consensus 306 ~a~~aA~~~~~~V~sltllatplDf 330 (560)
T TIGR01839 306 VGHLQALGQLRKVNSLTYLVSLLDS 330 (560)
T ss_pred HHHHHhcCCCCceeeEEeeeccccc
Confidence 6677786 78888877776664
|
This model represents the class II subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs, typically with six to fourteen carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell. |
| >COG2819 Predicted hydrolase of the alpha/beta superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.3e-05 Score=78.05 Aligned_cols=139 Identities=22% Similarity=0.199 Sum_probs=78.6
Q ss_pred EEEccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCc-EEEEEcccC---------CCC
Q 004766 455 FVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGA-VFCIANIRG---------GGE 524 (732)
Q Consensus 455 ~~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~-~v~~~~~rG---------~g~ 524 (732)
.+.|.++..+-.+++..|++..+++.+|+|-+.=|.--. +.....+...+++.=. +.+...++. ...
T Consensus 13 ~l~s~~~~~~yri~i~~P~~~~~~~~YpVlY~lDGn~vf---~~~~~~~~~~~~~~~~~~iv~iGye~~~~~~~~~r~~D 89 (264)
T COG2819 13 DLKSANTGRKYRIFIATPKNYPKPGGYPVLYMLDGNAVF---NALTEIMLRILADLPPPVIVGIGYETILVFDPNRRAYD 89 (264)
T ss_pred eeeecCCCcEEEEEecCCCCCCCCCCCcEEEEecchhhh---chHHHHhhhhhhcCCCceEEEecccccccccccccccc
Confidence 344444326778899999998766679977666554211 1222222334442221 122222221 122
Q ss_pred CchhH--H-hcc-----ccc-CCccHHHHH-HHHHHHHHHcC-CCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcC
Q 004766 525 YGEEW--H-KGG-----ALA-KKQNCFDDF-ISASEYLISAG-YTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHV 593 (732)
Q Consensus 525 ~g~~~--~-~~~-----~~~-~~~~~~~D~-~~~~~~l~~~~-~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~ 593 (732)
|-..- . .+. ... .+...|.+| ..-+.=++++. -++++|.+|+|+|+||++++.++..+|+.|.+.++.+
T Consensus 90 yTp~~~~~~~~~~~~~~~~~gGg~~~f~~fL~~~lkP~Ie~~y~~~~~~~~i~GhSlGGLfvl~aLL~~p~~F~~y~~~S 169 (264)
T COG2819 90 YTPPSANAIVASSRDGFYQFGGGGDAFREFLTEQLKPFIEARYRTNSERTAIIGHSLGGLFVLFALLTYPDCFGRYGLIS 169 (264)
T ss_pred CCCCCCCcccccccCCCCCCCCChHHHHHHHHHhhHHHHhcccccCcccceeeeecchhHHHHHHHhcCcchhceeeeec
Confidence 21110 0 000 011 122234333 34455455554 4789999999999999999999999999999999998
Q ss_pred Ccc
Q 004766 594 GVM 596 (732)
Q Consensus 594 p~~ 596 (732)
|-+
T Consensus 170 PSl 172 (264)
T COG2819 170 PSL 172 (264)
T ss_pred chh
Confidence 843
|
|
| >COG4188 Predicted dienelactone hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.3e-06 Score=88.61 Aligned_cols=130 Identities=13% Similarity=0.069 Sum_probs=89.7
Q ss_pred EEEEEEEcc-CCCeeEEEEEEEcCCCC---CCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCc
Q 004766 451 VHQVFVPSK-DGSTKIPMFIVSKKNIK---LDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYG 526 (732)
Q Consensus 451 ~~~~~~~s~-dG~~~i~~~~~~p~~~~---~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g 526 (732)
...+++... .+ -+++..++.|.... .-.+.|+|++.||...... .|.. ....+++.||+|+.++..|+..-+
T Consensus 38 ~~~i~~~~~~r~-~~~~v~~~~p~~~~~~~~~~~~PlvvlshG~Gs~~~--~f~~-~A~~lAs~Gf~Va~~~hpgs~~~~ 113 (365)
T COG4188 38 FVTITLNDPQRD-RERPVDLRLPQGGTGTVALYLLPLVVLSHGSGSYVT--GFAW-LAEHLASYGFVVAAPDHPGSNAGG 113 (365)
T ss_pred EEEEeccCcccC-CccccceeccCCCccccccCcCCeEEecCCCCCCcc--chhh-hHHHHhhCceEEEeccCCCccccc
Confidence 344555443 24 58888988887642 1148999999999755432 3332 245567799999999999986555
Q ss_pred hhHHhcccccCC----ccHHHHHHHHHHHHHHc-------CCCCCCcEEEEecChhHHHHHHHHhhCCC
Q 004766 527 EEWHKGGALAKK----QNCFDDFISASEYLISA-------GYTQSRKLCIEGGSNGGLLVGACINQRPD 584 (732)
Q Consensus 527 ~~~~~~~~~~~~----~~~~~D~~~~~~~l~~~-------~~~d~~~i~i~G~S~GG~l~~~~~~~~p~ 584 (732)
..-+..+..... .....|+-..+++|.+. +..|+.||++.|||+||+.++.++.-+.+
T Consensus 114 ~~~~~~~~~~~~p~~~~erp~dis~lLd~L~~~~~sP~l~~~ld~~~Vgv~GhS~GG~T~m~laGA~~~ 182 (365)
T COG4188 114 APAAYAGPGSYAPAEWWERPLDISALLDALLQLTASPALAGRLDPQRVGVLGHSFGGYTAMELAGAELD 182 (365)
T ss_pred CChhhcCCcccchhhhhcccccHHHHHHHHHHhhcCcccccccCccceEEEecccccHHHHHhcccccc
Confidence 444444422211 12346888888888776 35789999999999999999998875544
|
|
| >KOG2564 consensus Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.9e-06 Score=82.76 Aligned_cols=116 Identities=19% Similarity=0.230 Sum_probs=77.5
Q ss_pred EEEEEEccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHh
Q 004766 452 HQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHK 531 (732)
Q Consensus 452 ~~~~~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~ 531 (732)
+.+.++..++ ++..++..|. ....|++++.|||..+.. .|..-...+....-..++++|.||+|+.--+-..
T Consensus 51 edv~i~~~~~--t~n~Y~t~~~----~t~gpil~l~HG~G~S~L--SfA~~a~el~s~~~~r~~a~DlRgHGeTk~~~e~ 122 (343)
T KOG2564|consen 51 EDVSIDGSDL--TFNVYLTLPS----ATEGPILLLLHGGGSSAL--SFAIFASELKSKIRCRCLALDLRGHGETKVENED 122 (343)
T ss_pred cccccCCCcc--eEEEEEecCC----CCCccEEEEeecCcccch--hHHHHHHHHHhhcceeEEEeeccccCccccCChh
Confidence 4455555444 5566655554 246899999999866643 5554444555555677799999999975332222
Q ss_pred cccccCCccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhh
Q 004766 532 GGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQ 581 (732)
Q Consensus 532 ~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~ 581 (732)
+ .....-.+||.+.++++... .+.+|.++||||||.++...+.+
T Consensus 123 d---lS~eT~~KD~~~~i~~~fge---~~~~iilVGHSmGGaIav~~a~~ 166 (343)
T KOG2564|consen 123 D---LSLETMSKDFGAVIKELFGE---LPPQIILVGHSMGGAIAVHTAAS 166 (343)
T ss_pred h---cCHHHHHHHHHHHHHHHhcc---CCCceEEEeccccchhhhhhhhh
Confidence 1 11223367888888888643 45689999999999999877765
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=98.37 E-value=0.0002 Score=75.84 Aligned_cols=210 Identities=14% Similarity=0.182 Sum_probs=107.3
Q ss_pred eEEECCCCcEEEEEEeccCCceEEEEEEECCC-Cceecc--c------------ccceeeeeEEEEeCCcEEEEEEecCC
Q 004766 136 KVSVSEDAKYLAYALSYSGSDWATIKLMRIED-QIVEAD--A------------LSWFKFSSIAWTHDSKGFFYSRYPAP 200 (732)
Q Consensus 136 ~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~-g~~~~~--~------------~~~~~~~~~~WspDg~~l~y~~~~~~ 200 (732)
.+.++|||++|..+ +..+. .+.++++.. |..... . ........+.++|||+.++..-.
T Consensus 91 ~i~~~~~g~~l~va-ny~~g---~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dl--- 163 (345)
T PF10282_consen 91 HIAVDPDGRFLYVA-NYGGG---SVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDL--- 163 (345)
T ss_dssp EEEECTTSSEEEEE-ETTTT---EEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEET---
T ss_pred EEEEecCCCEEEEE-EccCC---eEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEec---
Confidence 57799999988655 44433 577788765 442211 0 11112367899999998876531
Q ss_pred CCCCCCCCCCcccCCcccEEEEEECCCCCCC--CeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCC-
Q 004766 201 KEGKDMDAGTETDSNLYHEFYYHFLGTKQSE--DILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLS- 277 (732)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~--~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~- 277 (732)
...+|+.+++...... .......+...+ -..+.++|||+++++... .. +.|.++++.
T Consensus 164 ---------------G~D~v~~~~~~~~~~~l~~~~~~~~~~G~G-PRh~~f~pdg~~~Yv~~e-~s---~~v~v~~~~~ 223 (345)
T PF10282_consen 164 ---------------GADRVYVYDIDDDTGKLTPVDSIKVPPGSG-PRHLAFSPDGKYAYVVNE-LS---NTVSVFDYDP 223 (345)
T ss_dssp ---------------TTTEEEEEEE-TTS-TEEEEEEEECSTTSS-EEEEEE-TTSSEEEEEET-TT---TEEEEEEEET
T ss_pred ---------------CCCEEEEEEEeCCCceEEEeeccccccCCC-CcEEEEcCCcCEEEEecC-CC---CcEEEEeecc
Confidence 2346888888654321 111112222222 246889999999876643 22 345555554
Q ss_pred -CCCCCcccccccCCCCCcEEee---eccc----ceEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCC-CceEeccCCC
Q 004766 278 -ALPEGLEGFKKRDGLLPFVKLI---DGFD----AQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPN-DWFEVIPEAE 348 (732)
Q Consensus 278 -~~~~~~~~~~~~~~~~~~~~l~---~~~~----~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~-~~~~l~~~~~ 348 (732)
++. + .....+. .+.. ..-..++|||+.|| ++|++.....++.+|.+++. .....++-.
T Consensus 224 ~~g~--~---------~~~~~~~~~~~~~~~~~~~~~i~ispdg~~ly-vsnr~~~sI~vf~~d~~~g~l~~~~~~~~~- 290 (345)
T PF10282_consen 224 SDGS--L---------TEIQTISTLPEGFTGENAPAEIAISPDGRFLY-VSNRGSNSISVFDLDPATGTLTLVQTVPTG- 290 (345)
T ss_dssp TTTE--E---------EEEEEEESCETTSCSSSSEEEEEE-TTSSEEE-EEECTTTEEEEEEECTTTTTEEEEEEEEES-
T ss_pred cCCc--e---------eEEEEeeeccccccccCCceeEEEecCCCEEE-EEeccCCEEEEEEEecCCCceEEEEEEeCC-
Confidence 321 1 0011111 1111 11124899998776 57776544444444444444 111222222
Q ss_pred CCceeEEEEecCC-EEEEEEecCCeeEEEEEeCCCCce
Q 004766 349 RDVLESATAVNLN-QMIVSYLSDVKYVLQIRDLKNGSL 385 (732)
Q Consensus 349 ~~~l~~~~~~~~~-~l~~~~~~~g~~~l~~~d~~~g~~ 385 (732)
...-..+.+++++ .|++.....+.-.++.+|.++|..
T Consensus 291 G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l 328 (345)
T PF10282_consen 291 GKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKL 328 (345)
T ss_dssp SSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEE
T ss_pred CCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcE
Confidence 2445778888754 555555555444555666667764
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >PF10340 DUF2424: Protein of unknown function (DUF2424); InterPro: IPR019436 Sterol homeostasis in eukaryotic cells relies on the reciprocal interconversion of free sterols and steryl esters | Back alignment and domain information |
|---|
Probab=98.36 E-value=5.3e-06 Score=85.48 Aligned_cols=208 Identities=19% Similarity=0.251 Sum_probs=120.2
Q ss_pred EEEEE-cCCCCCCCCccEEEEEcCCC-CccCCCCc---ChhHHHHHHhcCcEEEEEcccCCC--CCchhHHhcccccCCc
Q 004766 467 MFIVS-KKNIKLDGSHPCLLYGYGGF-NISVTPSF---SVSRTILMRHLGAVFCIANIRGGG--EYGEEWHKGGALAKKQ 539 (732)
Q Consensus 467 ~~~~~-p~~~~~~~~~P~vv~~hG~~-~~~~~~~~---~~~~~~~l~~~G~~v~~~~~rG~g--~~g~~~~~~~~~~~~~ 539 (732)
.|++. |.+.++ +.-|+|||+|||. .....|.. ...+..++. ..++++.||.-.. +. ...-+
T Consensus 108 ~Wlvk~P~~~~p-k~DpVlIYlHGGGY~l~~~p~qi~~L~~i~~~l~--~~SILvLDYsLt~~~~~---------~~~yP 175 (374)
T PF10340_consen 108 YWLVKAPNRFKP-KSDPVLIYLHGGGYFLGTTPSQIEFLLNIYKLLP--EVSILVLDYSLTSSDEH---------GHKYP 175 (374)
T ss_pred EEEEeCCcccCC-CCCcEEEEEcCCeeEecCCHHHHHHHHHHHHHcC--CCeEEEEeccccccccC---------CCcCc
Confidence 56666 555432 3459999999983 33323321 112334444 4588899987543 11 22334
Q ss_pred cHHHHHHHHHHHHH-HcCCCCCCcEEEEecChhHHHHHHHHhh--CCC---eeeEEEEcCCcccccccccCCCCCcc---
Q 004766 540 NCFDDFISASEYLI-SAGYTQSRKLCIEGGSNGGLLVGACINQ--RPD---LFGCALAHVGVMDMLRYHKFTIGHAW--- 610 (732)
Q Consensus 540 ~~~~D~~~~~~~l~-~~~~~d~~~i~i~G~S~GG~l~~~~~~~--~p~---~f~a~v~~~p~~d~~~~~~~~~~~~~--- 610 (732)
..+.+.++..++|+ +.|. ++|.++|-||||.|++.++.. .+. .-+.+|+.+|.+++..... .....+
T Consensus 176 tQL~qlv~~Y~~Lv~~~G~---~nI~LmGDSAGGnL~Ls~LqyL~~~~~~~~Pk~~iLISPWv~l~~~~~-~~~~~~~~n 251 (374)
T PF10340_consen 176 TQLRQLVATYDYLVESEGN---KNIILMGDSAGGNLALSFLQYLKKPNKLPYPKSAILISPWVNLVPQDS-QEGSSYHDN 251 (374)
T ss_pred hHHHHHHHHHHHHHhccCC---CeEEEEecCccHHHHHHHHHHHhhcCCCCCCceeEEECCCcCCcCCCC-CCCcccccc
Confidence 55789999999999 5564 589999999999999887652 111 2478999999998862111 000000
Q ss_pred ----------ccccCC----CCCHHHHHHHHhcCcccCCCC-----CCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHH
Q 004766 611 ----------VSDFGC----SEEEEEFYWLIKYSPLHNVRR-----PWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKL 671 (732)
Q Consensus 611 ----------~~~~g~----p~~~~~~~~~~~~sp~~~~~~-----~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~ 671 (732)
...|+. ..+++. .....|+.++.. .|+.- ....-+||+.|+++- --.+.++|
T Consensus 252 ~~~D~l~~~~~~~~~~~y~~~~~~~~---~~~~~~~~n~~~n~d~~~W~~I----~~~~~vfVi~Ge~Ev--frddI~~~ 322 (374)
T PF10340_consen 252 EKRDMLSYKGLSMFGDAYIGNNDPEN---DLNSLPFVNIEYNFDAEDWKDI----LKKYSVFVIYGEDEV--FRDDILEW 322 (374)
T ss_pred ccccccchhhHHHHHHhhcccccccc---ccccCCccCcccCCChhHHHHh----ccCCcEEEEECCccc--cHHHHHHH
Confidence 001110 001110 011233333321 12110 023479999999774 45589999
Q ss_pred HHHHHHhhcCCCCCCCCCCCEEEEEeCCCCCCC
Q 004766 672 LATMQYVLCTSLENSPQTNPIIGRIERKAGHGV 704 (732)
Q Consensus 672 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~ 704 (732)
++++..... ..-+.+....+.+++.|..
T Consensus 323 ~~~~~~~~~-----~~~~~~~nv~~~~~G~Hi~ 350 (374)
T PF10340_consen 323 AKKLNDVKP-----NKFSNSNNVYIDEGGIHIG 350 (374)
T ss_pred HHHHhhcCc-----cccCCcceEEEecCCcccc
Confidence 999986510 0013356777888999975
|
In Saccharomyces cerevisiae (Baker's yeast) sterol acetylation requires the acetyltransferase Atf2, whereas deacetylation requires Say1, a membrane-anchored deacetylase with a putative active site in the ER lumen. Lack of Say1 results in the secretion of acetylated sterols into the culture medium, indicating that the substrate specificity of Say1 determines whether acetylated sterols are secreted from the cells or whether they are deacetylated and retained. In S. cerevisiae cells lacking Say1 or Atf2 are sensitive against the plant-derived allylbenzene eugenol and both Say1 and Atf2 affect pregnenolone toxicity, indicating that lipid acetylation acts as a detoxification pathway []. Homologues of Say1 are present in the mammalian genome and can functionally substitute for Say1 in yeast demonstrating that part of this pathway has been evolutionarily conserved []. |
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.00016 Score=70.52 Aligned_cols=255 Identities=16% Similarity=0.132 Sum_probs=136.5
Q ss_pred eCCCCcCCCCCEEEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCce-----ecccccceeeeeEEEEeCCcEEEEE
Q 004766 121 LDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIV-----EADALSWFKFSSIAWTHDSKGFFYS 195 (732)
Q Consensus 121 ~D~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~-----~~~~~~~~~~~~~~WspDg~~l~y~ 195 (732)
++.+.|. ++.-.+..+.||.||++||-... ...|++|++..-+. +....+-.....++|+||-+.|++.
T Consensus 77 l~~~~LK-gH~~~vt~~~FsSdGK~lat~~~-----Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~ 150 (420)
T KOG2096|consen 77 LNVSVLK-GHKKEVTDVAFSSDGKKLATISG-----DRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVS 150 (420)
T ss_pred hhhhhhh-ccCCceeeeEEcCCCceeEEEeC-----CceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEE
Confidence 3556663 55567889999999999997742 25899999875321 1111111123678999999998887
Q ss_pred EecCCCCCCCCCCCCcccCCcccEEEEEECCCCCC---C------CeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCc
Q 004766 196 RYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQS---E------DILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCD 266 (732)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~---~------~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~ 266 (732)
.. +...|+++.+..... . |-+-|+... .....++...-.+++|+-.+.
T Consensus 151 ~~------------------~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh-~v~~i~iGiA~~~k~imsas~---- 207 (420)
T KOG2096|consen 151 VK------------------RGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKH-QVDIINIGIAGNAKYIMSASL---- 207 (420)
T ss_pred Ec------------------cCCEEEEEEeeecccCCCCcccccccccccchhc-ccceEEEeecCCceEEEEecC----
Confidence 53 233455555432110 0 101111111 112345666667788765543
Q ss_pred ceEEEEEEeCCCCCCCcccccccCCCCCcEEeee-cccceEEEEEecCCeEEEEeCCCCCCceEEEEeC-CCCC--Cce-
Q 004766 267 PVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLID-GFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDL-KEPN--DWF- 341 (732)
Q Consensus 267 ~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~-~~~~--~~~- 341 (732)
.++|.++++.+.- +..+-. ....-...+||+|+.++. +.- .+..++|..=. ..+. +..
T Consensus 208 -dt~i~lw~lkGq~--------------L~~idtnq~~n~~aavSP~GRFia~-~gF-TpDVkVwE~~f~kdG~fqev~r 270 (420)
T KOG2096|consen 208 -DTKICLWDLKGQL--------------LQSIDTNQSSNYDAAVSPDGRFIAV-SGF-TPDVKVWEPIFTKDGTFQEVKR 270 (420)
T ss_pred -CCcEEEEecCCce--------------eeeeccccccccceeeCCCCcEEEE-ecC-CCCceEEEEEeccCcchhhhhh
Confidence 2568999988521 111111 111112358999876553 322 23445554322 1222 111
Q ss_pred --EeccCCCCCceeEEEEecCCEEEEEEecCCeeEEEEEeCC----CCc---eeeecccc---cc-eeeEeecccCCcEE
Q 004766 342 --EVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLK----NGS---LLHQLPIE---IG-SVNAISARREDSVV 408 (732)
Q Consensus 342 --~l~~~~~~~~l~~~~~~~~~~l~~~~~~~g~~~l~~~d~~----~g~---~~~~l~~~---~g-~v~~~~~s~d~~~l 408 (732)
.|-.+. ..+..+.++++..-.++.+.||. +.+||.+ .++ .++.-+.| .| ..-.++.+|.|+.+
T Consensus 271 vf~LkGH~--saV~~~aFsn~S~r~vtvSkDG~--wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~l 346 (420)
T KOG2096|consen 271 VFSLKGHQ--SAVLAAAFSNSSTRAVTVSKDGK--WRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSL 346 (420)
T ss_pred hheeccch--hheeeeeeCCCcceeEEEecCCc--EEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEE
Confidence 222332 34567778876677778888874 4455542 122 12222122 11 11256788999988
Q ss_pred EEEEecCCCCceEEEEECCCCC
Q 004766 409 FISFTSFLIPGIVYQCNLKTET 430 (732)
Q Consensus 409 ~~~~ss~~~p~~~y~~d~~~~~ 430 (732)
.+++.| .+-.+..++|+
T Consensus 347 A~s~gs-----~l~~~~se~g~ 363 (420)
T KOG2096|consen 347 AVSFGS-----DLKVFASEDGK 363 (420)
T ss_pred EeecCC-----ceEEEEcccCc
Confidence 877665 45566665553
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.00014 Score=72.37 Aligned_cols=202 Identities=12% Similarity=0.041 Sum_probs=121.3
Q ss_pred CCEEEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceec-ccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCC
Q 004766 130 GTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEA-DALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDA 208 (732)
Q Consensus 130 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~-~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~ 208 (732)
+.-++-.++.+|+.+++| .|.+.-.-++|++.+|+..- .+...-.+....||-||..|+-.
T Consensus 63 H~~svFavsl~P~~~l~a-----TGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATG------------- 124 (399)
T KOG0296|consen 63 HTDSVFAVSLHPNNNLVA-----TGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATG------------- 124 (399)
T ss_pred cCCceEEEEeCCCCceEE-----ecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEec-------------
Confidence 445677889999777766 22333467899999998432 12222235789999999877653
Q ss_pred CCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccc
Q 004766 209 GTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKK 288 (732)
Q Consensus 209 ~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~ 288 (732)
....+|.+|+..++..+.. +.++..+ +.-+.|.|-+..|+..+.++ .+|++.+..+.
T Consensus 125 ------dmsG~v~v~~~stg~~~~~-~~~e~~d---ieWl~WHp~a~illAG~~DG-----svWmw~ip~~~-------- 181 (399)
T KOG0296|consen 125 ------DMSGKVLVFKVSTGGEQWK-LDQEVED---IEWLKWHPRAHILLAGSTDG-----SVWMWQIPSQA-------- 181 (399)
T ss_pred ------CCCccEEEEEcccCceEEE-eecccCc---eEEEEecccccEEEeecCCC-----cEEEEECCCcc--------
Confidence 2344688888887754432 2222222 33578999888777665443 38888876521
Q ss_pred cCCCCCcEEeeecccceE--EEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecCCEEEEE
Q 004766 289 RDGLLPFVKLIDGFDAQY--EVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVS 366 (732)
Q Consensus 289 ~~~~~~~~~l~~~~~~~~--~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~~l~~~ 366 (732)
..++..+..... ..+.|||++++.... ++.|.+++++++...-.+... +...+..+.+.....+++.
T Consensus 182 ------~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~----dgti~~Wn~ktg~p~~~~~~~-e~~~~~~~~~~~~~~~~~~ 250 (399)
T KOG0296|consen 182 ------LCKVMSGHNSPCTCGEFIPDGKRILTGYD----DGTIIVWNPKTGQPLHKITQA-EGLELPCISLNLAGSTLTK 250 (399)
T ss_pred ------eeeEecCCCCCcccccccCCCceEEEEec----CceEEEEecCCCceeEEeccc-ccCcCCccccccccceeEe
Confidence 234444433322 248899999886544 457999999998733333322 1233344444443566666
Q ss_pred EecCCeeEEEEEeCCCCce
Q 004766 367 YLSDVKYVLQIRDLKNGSL 385 (732)
Q Consensus 367 ~~~~g~~~l~~~d~~~g~~ 385 (732)
.+.++ .++.....+|+.
T Consensus 251 g~~e~--~~~~~~~~sgKV 267 (399)
T KOG0296|consen 251 GNSEG--VACGVNNGSGKV 267 (399)
T ss_pred ccCCc--cEEEEccccceE
Confidence 66664 344445445553
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.00048 Score=65.93 Aligned_cols=197 Identities=14% Similarity=0.139 Sum_probs=108.3
Q ss_pred EEEeEEECCC-CcEEEEEEeccCCceEEEEEEECCCCce------ecccccceeeeeEEEEeCCcEEEEEEecCCCCCCC
Q 004766 133 ALIKVSVSED-AKYLAYALSYSGSDWATIKLMRIEDQIV------EADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKD 205 (732)
Q Consensus 133 ~~~~~~~SPD-G~~la~~~~~~G~e~~~i~v~dl~~g~~------~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~ 205 (732)
.+-.++|+|- |..||- ++....|++|++.++.. +.+.-.. ...+++|||.|+.|+..+++.
T Consensus 16 r~W~~awhp~~g~ilAs-----cg~Dk~vriw~~~~~~s~~ck~vld~~hkr-sVRsvAwsp~g~~La~aSFD~------ 83 (312)
T KOG0645|consen 16 RVWSVAWHPGKGVILAS-----CGTDKAVRIWSTSSGDSWTCKTVLDDGHKR-SVRSVAWSPHGRYLASASFDA------ 83 (312)
T ss_pred cEEEEEeccCCceEEEe-----ecCCceEEEEecCCCCcEEEEEeccccchh-eeeeeeecCCCcEEEEeeccc------
Confidence 4668899998 775552 23336899999885431 1121111 257899999999999887654
Q ss_pred CCCCCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCccc
Q 004766 206 MDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEG 285 (732)
Q Consensus 206 ~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~ 285 (732)
.+-.|.-+.+.-+-+...++.++. +-.++||++|.+|+..+.+. .+|++......
T Consensus 84 -------------t~~Iw~k~~~efecv~~lEGHEnE--VK~Vaws~sG~~LATCSRDK-----SVWiWe~dedd----- 138 (312)
T KOG0645|consen 84 -------------TVVIWKKEDGEFECVATLEGHENE--VKCVAWSASGNYLATCSRDK-----SVWIWEIDEDD----- 138 (312)
T ss_pred -------------eEEEeecCCCceeEEeeeeccccc--eeEEEEcCCCCEEEEeeCCC-----eEEEEEecCCC-----
Confidence 334444443333333445554432 34789999999999887543 37887766421
Q ss_pred ccccCCCCCcEEeeecc-cceEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceE---eccCCCCCceeEEEEecCC
Q 004766 286 FKKRDGLLPFVKLIDGF-DAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFE---VIPEAERDVLESATAVNLN 361 (732)
Q Consensus 286 ~~~~~~~~~~~~l~~~~-~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~---l~~~~~~~~l~~~~~~~~~ 361 (732)
+-....-|.... +.-...|.|.. .|+|....+. ..++|+-+. .. .|.. |-.+. ..+=.+.+.+.+
T Consensus 139 -----Efec~aVL~~HtqDVK~V~WHPt~-dlL~S~SYDn-TIk~~~~~~-dd-dW~c~~tl~g~~--~TVW~~~F~~~G 207 (312)
T KOG0645|consen 139 -----EFECIAVLQEHTQDVKHVIWHPTE-DLLFSCSYDN-TIKVYRDED-DD-DWECVQTLDGHE--NTVWSLAFDNIG 207 (312)
T ss_pred -----cEEEEeeeccccccccEEEEcCCc-ceeEEeccCC-eEEEEeecC-CC-CeeEEEEecCcc--ceEEEEEecCCC
Confidence 011111222211 12223577744 4555554432 356666543 22 2432 22222 244445555534
Q ss_pred EEEEEEecCCeeEEEE
Q 004766 362 QMIVSYLSDVKYVLQI 377 (732)
Q Consensus 362 ~l~~~~~~~g~~~l~~ 377 (732)
.-++...+++.-.|++
T Consensus 208 ~rl~s~sdD~tv~Iw~ 223 (312)
T KOG0645|consen 208 SRLVSCSDDGTVSIWR 223 (312)
T ss_pred ceEEEecCCcceEeee
Confidence 4455667776555655
|
|
| >COG3208 GrsT Predicted thioesterase involved in non-ribosomal peptide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=98.32 E-value=7.4e-06 Score=78.21 Aligned_cols=201 Identities=13% Similarity=0.059 Sum_probs=111.1
Q ss_pred CccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCccHHHHHHHHHHHHHHcCC--
Q 004766 480 SHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGY-- 557 (732)
Q Consensus 480 ~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~-- 557 (732)
+.-++.+-|-|.+.+....|. .-|. .-+.++.+.++|-+.. .+..-++|+.+.++.|...-.
T Consensus 7 ~~~L~cfP~AGGsa~~fr~W~----~~lp-~~iel~avqlPGR~~r-----------~~ep~~~di~~Lad~la~el~~~ 70 (244)
T COG3208 7 RLRLFCFPHAGGSASLFRSWS----RRLP-ADIELLAVQLPGRGDR-----------FGEPLLTDIESLADELANELLPP 70 (244)
T ss_pred CceEEEecCCCCCHHHHHHHH----hhCC-chhheeeecCCCcccc-----------cCCcccccHHHHHHHHHHHhccc
Confidence 344666666665544322332 2233 3478899999986531 122345677777777765532
Q ss_pred CCCCcEEEEecChhHHHHHHHHhhC------CCeeeEEEEcCCcccccccccCCCCCccc---ccc-CCC----CCHHHH
Q 004766 558 TQSRKLCIEGGSNGGLLVGACINQR------PDLFGCALAHVGVMDMLRYHKFTIGHAWV---SDF-GCS----EEEEEF 623 (732)
Q Consensus 558 ~d~~~i~i~G~S~GG~l~~~~~~~~------p~~f~a~v~~~p~~d~~~~~~~~~~~~~~---~~~-g~p----~~~~~~ 623 (732)
.--.-.+++||||||+++..++.+. |..|-..-+.+|..+--..........+. .++ |.| +|++..
T Consensus 71 ~~d~P~alfGHSmGa~lAfEvArrl~~~g~~p~~lfisg~~aP~~~~~~~i~~~~D~~~l~~l~~lgG~p~e~led~El~ 150 (244)
T COG3208 71 LLDAPFALFGHSMGAMLAFEVARRLERAGLPPRALFISGCRAPHYDRGKQIHHLDDADFLADLVDLGGTPPELLEDPELM 150 (244)
T ss_pred cCCCCeeecccchhHHHHHHHHHHHHHcCCCcceEEEecCCCCCCcccCCccCCCHHHHHHHHHHhCCCChHHhcCHHHH
Confidence 2224799999999999999887742 33333334455633221111100000111 123 344 454432
Q ss_pred -----------HHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhcCCCCCCCCCCCE
Q 004766 624 -----------YWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPI 692 (732)
Q Consensus 624 -----------~~~~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 692 (732)
..+..|. ..... .+.+|+.++.|.+|..|.-.+...|.+.. +..+
T Consensus 151 ~l~LPilRAD~~~~e~Y~---~~~~~--------pl~~pi~~~~G~~D~~vs~~~~~~W~~~t-------------~~~f 206 (244)
T COG3208 151 ALFLPILRADFRALESYR---YPPPA--------PLACPIHAFGGEKDHEVSRDELGAWREHT-------------KGDF 206 (244)
T ss_pred HHHHHHHHHHHHHhcccc---cCCCC--------CcCcceEEeccCcchhccHHHHHHHHHhh-------------cCCc
Confidence 2222232 22221 37899999999999998766554444332 4568
Q ss_pred EEEEeCCCCCCCCCchHHHHHHHHHHHHHHHHHhC
Q 004766 693 IGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLG 727 (732)
Q Consensus 693 ~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 727 (732)
.++++ ++||++-....+ .+.+++.+.++
T Consensus 207 ~l~~f-dGgHFfl~~~~~------~v~~~i~~~l~ 234 (244)
T COG3208 207 TLRVF-DGGHFFLNQQRE------EVLARLEQHLA 234 (244)
T ss_pred eEEEe-cCcceehhhhHH------HHHHHHHHHhh
Confidence 99998 469998754332 34445555543
|
|
| >COG3571 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.31 E-value=6.7e-05 Score=65.91 Aligned_cols=167 Identities=14% Similarity=0.073 Sum_probs=97.8
Q ss_pred CccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccC--CCCCchhHHhcccccCCccH-HHHHHHHHHHHHHcC
Q 004766 480 SHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRG--GGEYGEEWHKGGALAKKQNC-FDDFISASEYLISAG 556 (732)
Q Consensus 480 ~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG--~g~~g~~~~~~~~~~~~~~~-~~D~~~~~~~l~~~~ 556 (732)
..-+||+.||..++..++. .......|+.+|+.|+-+++.= .--+| ++ +-..+..+ -...+.++..|.+.
T Consensus 13 ~~~tilLaHGAGasmdSt~-m~~~a~~la~~G~~vaRfefpYma~Rrtg---~r--kPp~~~~t~~~~~~~~~aql~~~- 85 (213)
T COG3571 13 APVTILLAHGAGASMDSTS-MTAVAAALARRGWLVARFEFPYMAARRTG---RR--KPPPGSGTLNPEYIVAIAQLRAG- 85 (213)
T ss_pred CCEEEEEecCCCCCCCCHH-HHHHHHHHHhCceeEEEeecchhhhcccc---CC--CCcCccccCCHHHHHHHHHHHhc-
Confidence 3447888999876654444 3344556666999999998741 00000 00 00111112 23345555556655
Q ss_pred CCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEE-cCCcccccccccCCCCCccccccCCCCCHHHHHHHHhcCcccCC
Q 004766 557 YTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALA-HVGVMDMLRYHKFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNV 635 (732)
Q Consensus 557 ~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~-~~p~~d~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~sp~~~~ 635 (732)
.+..+++|.|.||||-++.+++..---.+.+.+| .+||.- =|.|+... ..++
T Consensus 86 -l~~gpLi~GGkSmGGR~aSmvade~~A~i~~L~clgYPfhp----------------pGKPe~~R----------t~HL 138 (213)
T COG3571 86 -LAEGPLIIGGKSMGGRVASMVADELQAPIDGLVCLGYPFHP----------------PGKPEQLR----------TEHL 138 (213)
T ss_pred -ccCCceeeccccccchHHHHHHHhhcCCcceEEEecCccCC----------------CCCcccch----------hhhc
Confidence 3456899999999999988877641111444443 333321 13333221 1233
Q ss_pred CCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeCCCCCCCC
Q 004766 636 RRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVG 705 (732)
Q Consensus 636 ~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~ 705 (732)
.. ++.|+||++|..|..=.-.+... ... ..+++++...++.|-..
T Consensus 139 ~g----------l~tPtli~qGtrD~fGtr~~Va~---y~l------------s~~iev~wl~~adHDLk 183 (213)
T COG3571 139 TG----------LKTPTLITQGTRDEFGTRDEVAG---YAL------------SDPIEVVWLEDADHDLK 183 (213)
T ss_pred cC----------CCCCeEEeecccccccCHHHHHh---hhc------------CCceEEEEeccCccccc
Confidence 33 78999999999998766555422 211 45789999999999763
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=98.31 E-value=0.0008 Score=77.47 Aligned_cols=256 Identities=9% Similarity=-0.052 Sum_probs=138.8
Q ss_pred EeCCEEEEEEEcCCCCeeEEEEEeCCCCCceEEeCCCCcCCCCCEEEEeEEECCCCcEEEEEEeccC-CceEEEEEEECC
Q 004766 88 KRGNKYFYFHNTGLQPQSVLYVQDSLDAKAKVLLDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSG-SDWATIKLMRIE 166 (732)
Q Consensus 88 ~~g~~~~~~~~~~~~~~~~l~~r~~~~~~~~~l~D~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G-~e~~~i~v~dl~ 166 (732)
++|.++.|.....+.+++.|++++..+|. .|.+ .+. + .. ..+.|++||+.|.|+....+ ....+||.+++.
T Consensus 136 pdg~~la~~~d~~G~E~~~l~v~d~~tg~--~l~~--~i~--~-~~-~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lg 207 (686)
T PRK10115 136 PDNTIMALAEDFLSRRQYGIRFRNLETGN--WYPE--LLD--N-VE-PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIG 207 (686)
T ss_pred CCCCEEEEEecCCCcEEEEEEEEECCCCC--CCCc--ccc--C-cc-eEEEEeeCCCEEEEEEecCCCCCCCEEEEEECC
Confidence 45666777776667777778887765442 1111 111 0 11 35899999999999987543 234789999999
Q ss_pred CCc--e--ecccccceeeeeEEEEe-CCcEEEEEEecCCCCCCCCCCCCcccCCcccEEEEEECCCCCCCCeEEEecCCC
Q 004766 167 DQI--V--EADALSWFKFSSIAWTH-DSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEH 241 (732)
Q Consensus 167 ~g~--~--~~~~~~~~~~~~~~Wsp-Dg~~l~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~ 241 (732)
++. . +-..... .+.-..|.+ |++++++..... ....+++++..........+...+.+
T Consensus 208 t~~~~d~lv~~e~~~-~~~~~~~~s~d~~~l~i~~~~~----------------~~~~~~l~~~~~~~~~~~~~~~~~~~ 270 (686)
T PRK10115 208 TPASQDELVYEEKDD-TFYVSLHKTTSKHYVVIHLASA----------------TTSEVLLLDAELADAEPFVFLPRRKD 270 (686)
T ss_pred CChhHCeEEEeeCCC-CEEEEEEEcCCCCEEEEEEECC----------------ccccEEEEECcCCCCCceEEEECCCC
Confidence 883 1 1111111 122234555 898887654332 23456776643222222334433332
Q ss_pred CeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCCCCcEEeeecc-cceEEEEEecCCeEEEEe
Q 004766 242 PKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGF-DAQYEVIANDDTVFTFLT 320 (732)
Q Consensus 242 ~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~s~dg~~l~~~s 320 (732)
..+ .+ ...+..+++.++.+ ..+..|..+++.+ + ..++.++... +.....+...++.|++..
T Consensus 271 ~~~--~~--~~~~~~ly~~tn~~-~~~~~l~~~~~~~-~------------~~~~~l~~~~~~~~i~~~~~~~~~l~~~~ 332 (686)
T PRK10115 271 HEY--SL--DHYQHRFYLRSNRH-GKNFGLYRTRVRD-E------------QQWEELIPPRENIMLEGFTLFTDWLVVEE 332 (686)
T ss_pred CEE--EE--EeCCCEEEEEEcCC-CCCceEEEecCCC-c------------ccCeEEECCCCCCEEEEEEEECCEEEEEE
Confidence 222 22 23345666665443 2356787777763 1 1255666542 223333444477888877
Q ss_pred CCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEe--cC-CEEEEEEecC-CeeEEEEEeCCCCceeeecc
Q 004766 321 NKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAV--NL-NQMIVSYLSD-VKYVLQIRDLKNGSLLHQLP 390 (732)
Q Consensus 321 ~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~--~~-~~l~~~~~~~-g~~~l~~~d~~~g~~~~~l~ 390 (732)
++++ ..+|+.+++.++. ...|.-..+ ..+..+..+ .+ +.+++....- ....++.+|+++++. +.++
T Consensus 333 ~~~g-~~~l~~~~~~~~~-~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~~-~~l~ 402 (686)
T PRK10115 333 RQRG-LTSLRQINRKTRE-VIGIAFDDP-AYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGER-RVLK 402 (686)
T ss_pred EeCC-EEEEEEEcCCCCc-eEEecCCCC-ceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCcE-EEEE
Confidence 7655 5679999976544 444431211 222222332 11 4566555443 346999999986653 4443
|
|
| >TIGR03230 lipo_lipase lipoprotein lipase | Back alignment and domain information |
|---|
Probab=98.29 E-value=5e-06 Score=88.47 Aligned_cols=113 Identities=9% Similarity=-0.060 Sum_probs=77.1
Q ss_pred CCccEEEEEcCCCCccCCCCcChhHH-HHHHh-cCcEEEEEcccCCCCCchhHHhcccccCCccHHHHHHHHHHHHHHcC
Q 004766 479 GSHPCLLYGYGGFNISVTPSFSVSRT-ILMRH-LGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAG 556 (732)
Q Consensus 479 ~~~P~vv~~hG~~~~~~~~~~~~~~~-~~l~~-~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~ 556 (732)
...|++|++||.........|.+.+. .++.. ..+.|+++|.+|+|.... ..+. ..-...-+++.+.+++|.+..
T Consensus 39 ~~~ptvIlIHG~~~s~~~~~w~~~l~~al~~~~~d~nVI~VDw~g~g~s~y--~~a~--~~t~~vg~~la~lI~~L~~~~ 114 (442)
T TIGR03230 39 HETKTFIVIHGWTVTGMFESWVPKLVAALYEREPSANVIVVDWLSRAQQHY--PTSA--AYTKLVGKDVAKFVNWMQEEF 114 (442)
T ss_pred CCCCeEEEECCCCcCCcchhhHHHHHHHHHhccCCCEEEEEECCCcCCCCC--cccc--ccHHHHHHHHHHHHHHHHHhh
Confidence 45789999999866432234554333 33432 369999999999774321 1111 111222356667778877543
Q ss_pred CCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCc
Q 004766 557 YTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGV 595 (732)
Q Consensus 557 ~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~ 595 (732)
-.+.+++-++|||+||.+++.++.+.|++++.++...|.
T Consensus 115 gl~l~~VhLIGHSLGAhIAg~ag~~~p~rV~rItgLDPA 153 (442)
T TIGR03230 115 NYPWDNVHLLGYSLGAHVAGIAGSLTKHKVNRITGLDPA 153 (442)
T ss_pred CCCCCcEEEEEECHHHHHHHHHHHhCCcceeEEEEEcCC
Confidence 357789999999999999999999999999998877663
|
Members of this protein family are lipoprotein lipase (EC 3.1.1.34), a eukaryotic triacylglycerol lipase active in plasma and similar to pancreatic and hepatic triacylglycerol lipases (EC 3.1.1.3). It is also called clearing factor. It cleaves chylomicron and VLDL triacylglycerols; it also has phospholipase A-1 activity. |
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.00023 Score=72.92 Aligned_cols=245 Identities=9% Similarity=0.067 Sum_probs=138.1
Q ss_pred EEEEeEEECCCCcEEEEEEeccCCceEEEEEEECCC--Cceec-ccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCC
Q 004766 132 AALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIED--QIVEA-DALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDA 208 (732)
Q Consensus 132 ~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~--g~~~~-~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~ 208 (732)
..+..++|.|.-. |+.+...+| +++++-+++ ...++ ..+.........|+|+|+..++++
T Consensus 214 ~~I~sv~FHp~~p-lllvaG~d~----~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s------------ 276 (514)
T KOG2055|consen 214 GGITSVQFHPTAP-LLLVAGLDG----TLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTS------------ 276 (514)
T ss_pred CCceEEEecCCCc-eEEEecCCC----cEEEEEecCccChhheeeeeccCccceeeecCCCceEEEec------------
Confidence 3577899999766 445543333 455555543 33222 223333346788999999666653
Q ss_pred CCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccc
Q 004766 209 GTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKK 288 (732)
Q Consensus 209 ~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~ 288 (732)
++..-+|.|++.+.+...+-...+-. ...+..+.+|+|+++|++.... ..|+++...+++
T Consensus 277 ------~rrky~ysyDle~ak~~k~~~~~g~e-~~~~e~FeVShd~~fia~~G~~-----G~I~lLhakT~e-------- 336 (514)
T KOG2055|consen 277 ------GRRKYLYSYDLETAKVTKLKPPYGVE-EKSMERFEVSHDSNFIAIAGNN-----GHIHLLHAKTKE-------- 336 (514)
T ss_pred ------ccceEEEEeeccccccccccCCCCcc-cchhheeEecCCCCeEEEcccC-----ceEEeehhhhhh--------
Confidence 33445899999876543221111111 1234578899999999988653 458888776642
Q ss_pred cCCCCCcEEeeecccceEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecCCEEEEEEe
Q 004766 289 RDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYL 368 (732)
Q Consensus 289 ~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~~l~~~~~ 368 (732)
. +..+.-.....-..|+.||++|+.... .+.||.+|+.........+.+. ...-..++.+.++.++++.+
T Consensus 337 ---l--i~s~KieG~v~~~~fsSdsk~l~~~~~----~GeV~v~nl~~~~~~~rf~D~G-~v~gts~~~S~ng~ylA~GS 406 (514)
T KOG2055|consen 337 ---L--ITSFKIEGVVSDFTFSSDSKELLASGG----TGEVYVWNLRQNSCLHRFVDDG-SVHGTSLCISLNGSYLATGS 406 (514)
T ss_pred ---h--hheeeeccEEeeEEEecCCcEEEEEcC----CceEEEEecCCcceEEEEeecC-ccceeeeeecCCCceEEecc
Confidence 0 111111111111247889988886533 3489999998876434443332 23334566666566777777
Q ss_pred cCCeeEEEEEeCCC----Cceeeecc-cc--cceeeEeecccCCcEEEEEEecCCCCceEEEEECCC
Q 004766 369 SDVKYVLQIRDLKN----GSLLHQLP-IE--IGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKT 428 (732)
Q Consensus 369 ~~g~~~l~~~d~~~----g~~~~~l~-~~--~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~ 428 (732)
+.|.-.| ||.++ +.. +.+. +. ...|+++.+++|+..|.+ .|-..+..+..+.+.+
T Consensus 407 ~~GiVNI--Yd~~s~~~s~~P-kPik~~dNLtt~Itsl~Fn~d~qiLAi--aS~~~knalrLVHvPS 468 (514)
T KOG2055|consen 407 DSGIVNI--YDGNSCFASTNP-KPIKTVDNLTTAITSLQFNHDAQILAI--ASRVKKNALRLVHVPS 468 (514)
T ss_pred CcceEEE--eccchhhccCCC-CchhhhhhhheeeeeeeeCcchhhhhh--hhhccccceEEEeccc
Confidence 7765444 45321 222 2332 11 235778888888875543 3444555666655544
|
|
| >PF09752 DUF2048: Uncharacterized conserved protein (DUF2048); InterPro: IPR019149 This family of proteins has no known function | Back alignment and domain information |
|---|
Probab=98.27 E-value=5.3e-05 Score=76.90 Aligned_cols=125 Identities=13% Similarity=0.039 Sum_probs=77.2
Q ss_pred EEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhc-------ccccC
Q 004766 465 IPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKG-------GALAK 537 (732)
Q Consensus 465 i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~-------~~~~~ 537 (732)
....++.|+.. .....|++|+..|-..........-....++. .|+.-++...+=.|..-..-... .....
T Consensus 77 a~~~~~~P~~~-~~~~rp~~IhLagTGDh~f~rR~~l~a~pLl~-~gi~s~~le~Pyyg~RkP~~Q~~s~l~~VsDl~~~ 154 (348)
T PF09752_consen 77 ARFQLLLPKRW-DSPYRPVCIHLAGTGDHGFWRRRRLMARPLLK-EGIASLILENPYYGQRKPKDQRRSSLRNVSDLFVM 154 (348)
T ss_pred eEEEEEECCcc-ccCCCceEEEecCCCccchhhhhhhhhhHHHH-cCcceEEEecccccccChhHhhcccccchhHHHHH
Confidence 34556677764 23568999999886543211111111235566 69998888754322221111110 00111
Q ss_pred CccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCC
Q 004766 538 KQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVG 594 (732)
Q Consensus 538 ~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p 594 (732)
+...+.+..+.+.||.++|+. ++++.|.||||.++..+++..|....++-+.++
T Consensus 155 g~~~i~E~~~Ll~Wl~~~G~~---~~g~~G~SmGG~~A~laa~~~p~pv~~vp~ls~ 208 (348)
T PF09752_consen 155 GRATILESRALLHWLEREGYG---PLGLTGISMGGHMAALAASNWPRPVALVPCLSW 208 (348)
T ss_pred HhHHHHHHHHHHHHHHhcCCC---ceEEEEechhHhhHHhhhhcCCCceeEEEeecc
Confidence 234467778889999999874 899999999999999999998986555444433
|
|
| >COG2021 MET2 Homoserine acetyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.26 E-value=5.9e-06 Score=83.63 Aligned_cols=113 Identities=19% Similarity=0.164 Sum_probs=72.7
Q ss_pred CCccEEEEEcCCCCccCCCC--------cChhH---HHHHHhcCcEEEEEcccCCC--CCchhHHhcc----cccCCccH
Q 004766 479 GSHPCLLYGYGGFNISVTPS--------FSVSR---TILMRHLGAVFCIANIRGGG--EYGEEWHKGG----ALAKKQNC 541 (732)
Q Consensus 479 ~~~P~vv~~hG~~~~~~~~~--------~~~~~---~~~l~~~G~~v~~~~~rG~g--~~g~~~~~~~----~~~~~~~~ 541 (732)
.+..+||++||--|.+..-. |...+ -.-++..-|-|++.|.-||. ..|..-.... .......+
T Consensus 49 ~~~NaVli~HaLtG~~h~~~~~~~~~~GWW~~liGpG~~iDt~r~fvIc~NvlG~c~GStgP~s~~p~g~~yg~~FP~~t 128 (368)
T COG2021 49 EKDNAVLICHALTGDSHAAGTADDGEKGWWDDLIGPGKPIDTERFFVICTNVLGGCKGSTGPSSINPGGKPYGSDFPVIT 128 (368)
T ss_pred cCCceEEEeccccCcccccccCCCCCCccHHHhcCCCCCCCccceEEEEecCCCCCCCCCCCCCcCCCCCccccCCCccc
Confidence 45678999999766433222 32211 11234455999999999874 2333221111 11223457
Q ss_pred HHHHHHHHHHHHHc-CCCCCCcEE-EEecChhHHHHHHHHhhCCCeeeEEEEcCC
Q 004766 542 FDDFISASEYLISA-GYTQSRKLC-IEGGSNGGLLVGACINQRPDLFGCALAHVG 594 (732)
Q Consensus 542 ~~D~~~~~~~l~~~-~~~d~~~i~-i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p 594 (732)
+.|.+.+-+.|++. |+ +||. ++|+||||+.++..+..+||..+.+|..+.
T Consensus 129 i~D~V~aq~~ll~~LGI---~~l~avvGgSmGGMqaleWa~~yPd~V~~~i~ia~ 180 (368)
T COG2021 129 IRDMVRAQRLLLDALGI---KKLAAVVGGSMGGMQALEWAIRYPDRVRRAIPIAT 180 (368)
T ss_pred HHHHHHHHHHHHHhcCc---ceEeeeeccChHHHHHHHHHHhChHHHhhhheecc
Confidence 88999988887665 54 3565 999999999999999999998766655443
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.00042 Score=67.30 Aligned_cols=242 Identities=12% Similarity=0.089 Sum_probs=135.2
Q ss_pred CCCCEEEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCce--ecccccceeeeeEEEEeCCcEEEEEEecCCCCCCC
Q 004766 128 DDGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIV--EADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKD 205 (732)
Q Consensus 128 ~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~--~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~ 205 (732)
+++...+....|+|||..+|- +|.+ .+|++|++.+... -........+.++.|.+|++.|+-+..|
T Consensus 44 ~gh~geI~~~~F~P~gs~~aS----gG~D-r~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtD------- 111 (338)
T KOG0265|consen 44 PGHKGEIYTIKFHPDGSCFAS----GGSD-RAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTD------- 111 (338)
T ss_pred CCCcceEEEEEECCCCCeEee----cCCc-ceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCC-------
Confidence 345566788999999998872 4554 7899999765431 1111222235789999999988876433
Q ss_pred CCCCCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCccc
Q 004766 206 MDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEG 285 (732)
Q Consensus 206 ~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~ 285 (732)
.+|+.||..+++.. +....+..+...+..+.-|-.++.+.++. ..+.++|...+.+
T Consensus 112 ------------k~v~~wD~~tG~~~----rk~k~h~~~vNs~~p~rrg~~lv~SgsdD----~t~kl~D~R~k~~---- 167 (338)
T KOG0265|consen 112 ------------KTVRGWDAETGKRI----RKHKGHTSFVNSLDPSRRGPQLVCSGSDD----GTLKLWDIRKKEA---- 167 (338)
T ss_pred ------------ceEEEEecccceee----ehhccccceeeecCccccCCeEEEecCCC----ceEEEEeecccch----
Confidence 36899999887532 22223344555666666777777665543 3356667665321
Q ss_pred ccccCCCCCcEEeeecccceEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecCCEEEE
Q 004766 286 FKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIV 365 (732)
Q Consensus 286 ~~~~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~~l~~ 365 (732)
.+.....+......|...++.+.. ++-+..|-.+|+......-.+..+. ..|.++..++.+..++
T Consensus 168 ---------~~t~~~kyqltAv~f~d~s~qv~s----ggIdn~ikvWd~r~~d~~~~lsGh~--DtIt~lsls~~gs~ll 232 (338)
T KOG0265|consen 168 ---------IKTFENKYQLTAVGFKDTSDQVIS----GGIDNDIKVWDLRKNDGLYTLSGHA--DTITGLSLSRYGSFLL 232 (338)
T ss_pred ---------hhccccceeEEEEEecccccceee----ccccCceeeeccccCcceEEeeccc--CceeeEEeccCCCccc
Confidence 111111121111235555555442 2334567778886654233444444 6788888888555444
Q ss_pred EEecCCeeEEEEEeCC---CCceeeeccccccee-------eEeecccCCcEEEEEEecCCCCceEEEEECCC
Q 004766 366 SYLSDVKYVLQIRDLK---NGSLLHQLPIEIGSV-------NAISARREDSVVFISFTSFLIPGIVYQCNLKT 428 (732)
Q Consensus 366 ~~~~~g~~~l~~~d~~---~g~~~~~l~~~~g~v-------~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~ 428 (732)
+-.-+ ..+.+||.. .++. .+..-.|.+ -..+++|++..+-+..++ ..+|.+|..+
T Consensus 233 snsMd--~tvrvwd~rp~~p~~R--~v~if~g~~hnfeknlL~cswsp~~~~i~ags~d----r~vyvwd~~~ 297 (338)
T KOG0265|consen 233 SNSMD--NTVRVWDVRPFAPSQR--CVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSAD----RFVYVWDTTS 297 (338)
T ss_pred ccccc--ceEEEEEecccCCCCc--eEEEeecchhhhhhhcceeeccCCCCcccccccc----ceEEEeeccc
Confidence 44333 367888864 2222 122111111 123567777655433332 3577777544
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.00043 Score=72.51 Aligned_cols=236 Identities=12% Similarity=0.109 Sum_probs=138.8
Q ss_pred EEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceec---ccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCC
Q 004766 134 LIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEA---DALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGT 210 (732)
Q Consensus 134 ~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~---~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~ 210 (732)
..-++||-|+|++|-.. + ..|.|++..+-..+. ..+.+ +.+++|||-+.-|+|-.-..
T Consensus 308 WP~frWS~DdKy~Arm~---~---~sisIyEtpsf~lld~Kslki~g--Ir~FswsP~~~llAYwtpe~----------- 368 (698)
T KOG2314|consen 308 WPIFRWSHDDKYFARMT---G---NSISIYETPSFMLLDKKSLKISG--IRDFSWSPTSNLLAYWTPET----------- 368 (698)
T ss_pred cceEEeccCCceeEEec---c---ceEEEEecCceeeecccccCCcc--ccCcccCCCcceEEEEcccc-----------
Confidence 35688999999999774 2 367777766533322 22333 36899999999999975221
Q ss_pred cccCCcccEEEEEECCCCCCC-CeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcc-------eEEEEEEeCCCCCCC
Q 004766 211 ETDSNLYHEFYYHFLGTKQSE-DILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDP-------VNKVYYCDLSALPEG 282 (732)
Q Consensus 211 ~~~~~~~~~v~~~~lgt~~~~-~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~-------~~~l~~~d~~~~~~~ 282 (732)
...|.++-+..+-+.+.- ..-++... .+.+.|-.+|.||.+...+.... +-+|+.++-..
T Consensus 369 ---~~~parvtL~evPs~~~iRt~nlfnVs-----DckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKd---- 436 (698)
T KOG2314|consen 369 ---NNIPARVTLMEVPSKREIRTKNLFNVS-----DCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKD---- 436 (698)
T ss_pred ---cCCcceEEEEecCccceeeeccceeee-----ccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccC----
Confidence 245566666666554321 11122221 24678999999999988766521 23455554222
Q ss_pred cccccccCCCCCcEEeeecccceEE-EEEecCCeEEEEeCCC-CCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecC
Q 004766 283 LEGFKKRDGLLPFVKLIDGFDAQYE-VIANDDTVFTFLTNKD-APKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNL 360 (732)
Q Consensus 283 ~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~-~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~ 360 (732)
.|+..+ .-.+.... .|.|.|+++.+++... ..+.+.|.+...... +. |+..-+......+.|++.
T Consensus 437 ----------Ipve~v-elke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~-~~-lVk~~dk~~~N~vfwsPk 503 (698)
T KOG2314|consen 437 ----------IPVEVV-ELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKK-PS-LVKELDKKFANTVFWSPK 503 (698)
T ss_pred ----------CCceee-ecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCc-hh-hhhhhcccccceEEEcCC
Confidence 223222 11112222 4999999999887654 345567776643333 33 444444455677889874
Q ss_pred -CEEEEEEecCCeeEEEEEeCCCCceeeecccc-cceeeEeecccCCcEEEEEEec
Q 004766 361 -NQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIE-IGSVNAISARREDSVVFISFTS 414 (732)
Q Consensus 361 -~~l~~~~~~~g~~~l~~~d~~~g~~~~~l~~~-~g~v~~~~~s~d~~~l~~~~ss 414 (732)
+.+++.......+.|..+|.+-... +.+..+ ....+.+.++|.|.++.-+.++
T Consensus 504 G~fvvva~l~s~~g~l~F~D~~~a~~-k~~~~~eh~~at~veWDPtGRYvvT~ss~ 558 (698)
T KOG2314|consen 504 GRFVVVAALVSRRGDLEFYDTDYADL-KDTASPEHFAATEVEWDPTGRYVVTSSSS 558 (698)
T ss_pred CcEEEEEEecccccceEEEecchhhh-hhccCccccccccceECCCCCEEEEeeeh
Confidence 4566666665567888888763222 334333 2234466788988866544444
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.23 E-value=2.7e-05 Score=76.08 Aligned_cols=194 Identities=15% Similarity=0.120 Sum_probs=109.1
Q ss_pred EEECCCCcEEEEEEeccCCceEEEEEEECCCCceecccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCCc
Q 004766 137 VSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNL 216 (732)
Q Consensus 137 ~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~~ 216 (732)
.+|||+|++||-.. ++++.|.|.+|-+......--.+...+.|+.|+-.++.+....
T Consensus 14 c~fSp~g~yiAs~~------~yrlviRd~~tlq~~qlf~cldki~yieW~ads~~ilC~~yk~----------------- 70 (447)
T KOG4497|consen 14 CSFSPCGNYIASLS------RYRLVIRDSETLQLHQLFLCLDKIVYIEWKADSCHILCVAYKD----------------- 70 (447)
T ss_pred eeECCCCCeeeeee------eeEEEEeccchhhHHHHHHHHHHhhheeeeccceeeeeeeecc-----------------
Confidence 57999999999774 3689999998876443221111246789999998888775433
Q ss_pred ccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCCCCcE
Q 004766 217 YHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFV 296 (732)
Q Consensus 217 ~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~ 296 (732)
..|..|++..+.= .+-.++ ++.-..+..|||||+.|+..+. +..+|-++.+.+....+ .+.
T Consensus 71 -~~vqvwsl~Qpew--~ckIde--g~agls~~~WSPdgrhiL~tse----F~lriTVWSL~t~~~~~---------~~~- 131 (447)
T KOG4497|consen 71 -PKVQVWSLVQPEW--YCKIDE--GQAGLSSISWSPDGRHILLTSE----FDLRITVWSLNTQKGYL---------LPH- 131 (447)
T ss_pred -ceEEEEEeeccee--EEEecc--CCCcceeeeECCCcceEeeeec----ceeEEEEEEeccceeEE---------ecc-
Confidence 2477777764421 121222 1223457899999999987763 35667777776632110 000
Q ss_pred EeeecccceEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCC--CCCceeEEEEecCCEEEEEEecCCeeE
Q 004766 297 KLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEA--ERDVLESATAVNLNQMIVSYLSDVKYV 374 (732)
Q Consensus 297 ~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~--~~~~l~~~~~~~~~~l~~~~~~~g~~~ 374 (732)
..... ....+.+||+...+.+.++-..+ +.+..-+.|..+ .+- +...+.++.|++|+..++....--.-.
T Consensus 132 -pK~~~--kg~~f~~dg~f~ai~sRrDCkdy----v~i~~c~~W~ll-~~f~~dT~DltgieWsPdg~~laVwd~~Leyk 203 (447)
T KOG4497|consen 132 -PKTNV--KGYAFHPDGQFCAILSRRDCKDY----VQISSCKAWILL-KEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYK 203 (447)
T ss_pred -cccCc--eeEEECCCCceeeeeecccHHHH----HHHHhhHHHHHH-HhcCCCcccccCceECCCCcEEEEecchhhhe
Confidence 00111 12247899998888877652221 111111123211 111 123467788988665555444333345
Q ss_pred EEEEeC
Q 004766 375 LQIRDL 380 (732)
Q Consensus 375 l~~~d~ 380 (732)
|+.+..
T Consensus 204 v~aYe~ 209 (447)
T KOG4497|consen 204 VYAYER 209 (447)
T ss_pred eeeeee
Confidence 555544
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.00013 Score=72.33 Aligned_cols=116 Identities=16% Similarity=0.190 Sum_probs=73.3
Q ss_pred CCEEEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceeccc-ccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCC
Q 004766 130 GTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADA-LSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDA 208 (732)
Q Consensus 130 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~-~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~ 208 (732)
|+.-+...+|.+||..++-++ -|+ ..|.|||.++|..++.. .....++-+.|||||+.|+-++.+.
T Consensus 194 gh~pVtsmqwn~dgt~l~tAS--~gs--ssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~da--------- 260 (445)
T KOG2139|consen 194 GHNPVTSMQWNEDGTILVTAS--FGS--SSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDA--------- 260 (445)
T ss_pred CCceeeEEEEcCCCCEEeecc--cCc--ceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccc---------
Confidence 345688999999999887553 233 58999999998855433 2222357899999999998886543
Q ss_pred CCcccCCcccEEE-EEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCC
Q 004766 209 GTETDSNLYHEFY-YHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLS 277 (732)
Q Consensus 209 ~~~~~~~~~~~v~-~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~ 277 (732)
..+|| .+..-|.+ ..+. .++......|||+|++|+|..+.. ..||-+...
T Consensus 261 --------vfrlw~e~q~wt~e---rw~l----gsgrvqtacWspcGsfLLf~~sgs----p~lysl~f~ 311 (445)
T KOG2139|consen 261 --------VFRLWQENQSWTKE---RWIL----GSGRVQTACWSPCGSFLLFACSGS----PRLYSLTFD 311 (445)
T ss_pred --------eeeeehhcccceec---ceec----cCCceeeeeecCCCCEEEEEEcCC----ceEEEEeec
Confidence 12233 11111111 1111 123456789999999999987542 345555443
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.0017 Score=68.51 Aligned_cols=236 Identities=11% Similarity=0.070 Sum_probs=115.6
Q ss_pred EEEEEeccCCceEEEEEEECCC-Cce--ecccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCCcccEEEE
Q 004766 146 LAYALSYSGSDWATIKLMRIED-QIV--EADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYY 222 (732)
Q Consensus 146 la~~~~~~G~e~~~i~v~dl~~-g~~--~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 222 (732)
.+|+.+..+ ..|+++|+.+ |+. +...........++++||++.||.+... ...|..
T Consensus 3 ~~y~~~~~~---~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~------------------~~~i~~ 61 (330)
T PRK11028 3 IVYIASPES---QQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRP------------------EFRVLS 61 (330)
T ss_pred EEEEEcCCC---CCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECC------------------CCcEEE
Confidence 456664332 4788889864 442 2111111223678999999988776421 134655
Q ss_pred EECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCCCCcEEeeec-
Q 004766 223 HFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDG- 301 (732)
Q Consensus 223 ~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~- 301 (732)
+++.... .-..+-..+. ......+.++|||++|+..... ...+.+++++.... .........+
T Consensus 62 ~~~~~~g-~l~~~~~~~~-~~~p~~i~~~~~g~~l~v~~~~----~~~v~v~~~~~~g~----------~~~~~~~~~~~ 125 (330)
T PRK11028 62 YRIADDG-ALTFAAESPL-PGSPTHISTDHQGRFLFSASYN----ANCVSVSPLDKDGI----------PVAPIQIIEGL 125 (330)
T ss_pred EEECCCC-ceEEeeeecC-CCCceEEEECCCCCEEEEEEcC----CCeEEEEEECCCCC----------CCCceeeccCC
Confidence 6664211 1111111111 1122468899999998766432 24567777653110 0001111111
Q ss_pred ccceEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceE------eccCCCCCceeEEEEecCCEEEEEEecCCeeEE
Q 004766 302 FDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFE------VIPEAERDVLESATAVNLNQMIVSYLSDVKYVL 375 (732)
Q Consensus 302 ~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~------l~~~~~~~~l~~~~~~~~~~l~~~~~~~g~~~l 375 (732)
.......++|+|+.+|+ ++.+ ...|..+|+++...... -++. ......+.+++++..++...+. ...|
T Consensus 126 ~~~~~~~~~p~g~~l~v-~~~~--~~~v~v~d~~~~g~l~~~~~~~~~~~~--g~~p~~~~~~pdg~~lyv~~~~-~~~v 199 (330)
T PRK11028 126 EGCHSANIDPDNRTLWV-PCLK--EDRIRLFTLSDDGHLVAQEPAEVTTVE--GAGPRHMVFHPNQQYAYCVNEL-NSSV 199 (330)
T ss_pred CcccEeEeCCCCCEEEE-eeCC--CCEEEEEEECCCCcccccCCCceecCC--CCCCceEEECCCCCEEEEEecC-CCEE
Confidence 11122248899887775 4433 23677777765321110 1111 1223457777765544444432 2577
Q ss_pred EEEeCC--CCce--eeecc-ccc-----ceeeEeecccCCcEEEEEEecCCCCceEEEEECC
Q 004766 376 QIRDLK--NGSL--LHQLP-IEI-----GSVNAISARREDSVVFISFTSFLIPGIVYQCNLK 427 (732)
Q Consensus 376 ~~~d~~--~g~~--~~~l~-~~~-----g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~ 427 (732)
.+|+++ +|+. ...+. .|. .....+.++|+++.++++- .....+..+++.
T Consensus 200 ~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~---~~~~~I~v~~i~ 258 (330)
T PRK11028 200 DVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACD---RTASLISVFSVS 258 (330)
T ss_pred EEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEec---CCCCeEEEEEEe
Confidence 777775 3332 12222 121 1122356789998777642 223456556553
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=7.2e-05 Score=83.68 Aligned_cols=118 Identities=12% Similarity=0.005 Sum_probs=72.8
Q ss_pred EEeEEECCCCcEEEEEEecc-------CCceEEEEEEECCCCceecccccceeeeeEEEEeCCcEEEEEEecCCCCCCCC
Q 004766 134 LIKVSVSEDAKYLAYALSYS-------GSDWATIKLMRIEDQIVEADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDM 206 (732)
Q Consensus 134 ~~~~~~SPDG~~la~~~~~~-------G~e~~~i~v~dl~~g~~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~ 206 (732)
+..++|||||++|+|+.+.. .+...+|+++++++|+... ..++ ....+.|||||++|+|+..
T Consensus 399 ~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~-~~~g-~Issl~wSpDG~RiA~i~~--------- 467 (591)
T PRK13616 399 LTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS-RVPG-PISELQLSRDGVRAAMIIG--------- 467 (591)
T ss_pred CCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh-ccCC-CcCeEEECCCCCEEEEEEC---------
Confidence 45899999999999886431 1223588999998887543 2222 2589999999999999851
Q ss_pred CCCCcccCCcccEEEE---EECCCCCCCC---eEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCC
Q 004766 207 DAGTETDSNLYHEFYY---HFLGTKQSED---ILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSAL 279 (732)
Q Consensus 207 ~~~~~~~~~~~~~v~~---~~lgt~~~~~---~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~ 279 (732)
.+|++ .+.+.+...- +.+...- ..-..++.|..|++.+ +... .. ...+|.+++++.
T Consensus 468 -----------g~v~Va~Vvr~~~G~~~l~~~~~l~~~l--~~~~~~l~W~~~~~L~-V~~~-~~--~~~v~~v~vDG~ 529 (591)
T PRK13616 468 -----------GKVYLAVVEQTEDGQYALTNPREVGPGL--GDTAVSLDWRTGDSLV-VGRS-DP--EHPVWYVNLDGS 529 (591)
T ss_pred -----------CEEEEEEEEeCCCCceeecccEEeeccc--CCccccceEecCCEEE-EEec-CC--CCceEEEecCCc
Confidence 14665 3333332110 0121111 1112468899999954 3332 22 456899998863
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.0011 Score=63.49 Aligned_cols=230 Identities=17% Similarity=0.135 Sum_probs=129.7
Q ss_pred CCEEEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCC
Q 004766 130 GTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAG 209 (732)
Q Consensus 130 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~ 209 (732)
+..++-.+.++.|.++|. .|+...++++||+++|+.+.....+...-.+.|+++|..++++..+.
T Consensus 51 HtGavW~~Did~~s~~li-----TGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~---------- 115 (327)
T KOG0643|consen 51 HTGAVWCCDIDWDSKHLI-----TGSADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQ---------- 115 (327)
T ss_pred CCceEEEEEecCCcceee-----eccccceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhh----------
Confidence 445666777888888876 56666899999999999875444344456788999999999987544
Q ss_pred CcccCCcccEEEEEECCCCC----CCC-eEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcc
Q 004766 210 TETDSNLYHEFYYHFLGTKQ----SED-ILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLE 284 (732)
Q Consensus 210 ~~~~~~~~~~v~~~~lgt~~----~~~-~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~ 284 (732)
.+....|.+.++.... ++. .+....++ .-...+-|+|-|++|+..-.++ .|-.+|+.++..
T Consensus 116 ----mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~--skit~a~Wg~l~~~ii~Ghe~G-----~is~~da~~g~~--- 181 (327)
T KOG0643|consen 116 ----MGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPD--SKITSALWGPLGETIIAGHEDG-----SISIYDARTGKE--- 181 (327)
T ss_pred ----cCcceEEEEEEccCChhhhcccCceEEecCCc--cceeeeeecccCCEEEEecCCC-----cEEEEEcccCce---
Confidence 3566677777775332 122 22222222 3346788999999997654333 367778877421
Q ss_pred cccccCCCCCcEEeeecccceE--EEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecC-C
Q 004766 285 GFKKRDGLLPFVKLIDGFDAQY--EVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNL-N 361 (732)
Q Consensus 285 ~~~~~~~~~~~~~l~~~~~~~~--~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~-~ 361 (732)
...-.......+ ..+++|... |++.......+ ++|..+-...++...+ ..+...++++- +
T Consensus 182 ----------~v~s~~~h~~~Ind~q~s~d~T~--FiT~s~Dttak--l~D~~tl~v~Kty~te---~PvN~aaisP~~d 244 (327)
T KOG0643|consen 182 ----------LVDSDEEHSSKINDLQFSRDRTY--FITGSKDTTAK--LVDVRTLEVLKTYTTE---RPVNTAAISPLLD 244 (327)
T ss_pred ----------eeechhhhccccccccccCCcce--EEecccCccce--eeeccceeeEEEeeec---ccccceecccccc
Confidence 000000000011 136776544 33332222333 4565555433444433 34566666662 5
Q ss_pred EEEEEEecCCeeEEEEEeCCCCc------------eeeecccccceeeEeecccCCc
Q 004766 362 QMIVSYLSDVKYVLQIRDLKNGS------------LLHQLPIEIGSVNAISARREDS 406 (732)
Q Consensus 362 ~l~~~~~~~g~~~l~~~d~~~g~------------~~~~l~~~~g~v~~~~~s~d~~ 406 (732)
++++-...++. .+..-+...|+ .+.++..+.|.+.+++++|+|+
T Consensus 245 ~VilgGGqeA~-dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGk 300 (327)
T KOG0643|consen 245 HVILGGGQEAM-DVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGK 300 (327)
T ss_pred eEEecCCceee-eeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCc
Confidence 66665444432 22222222232 1223333456778889999997
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.0023 Score=67.91 Aligned_cols=249 Identities=15% Similarity=0.068 Sum_probs=118.3
Q ss_pred EEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecccc--------cceeeeeEEEEeCCcEEEEEEecCCCCCCC
Q 004766 134 LIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADAL--------SWFKFSSIAWTHDSKGFFYSRYPAPKEGKD 205 (732)
Q Consensus 134 ~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~--------~~~~~~~~~WspDg~~l~y~~~~~~~~~~~ 205 (732)
..++.+||||++|+.+....+ ++.|+|.++.+++.... ...+..++.-||++..+++.-.+
T Consensus 80 ~~~i~~s~DG~~~~v~n~~~~----~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd------- 148 (369)
T PF02239_consen 80 PRGIAVSPDGKYVYVANYEPG----TVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKD------- 148 (369)
T ss_dssp EEEEEE--TTTEEEEEEEETT----EEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETT-------
T ss_pred cceEEEcCCCCEEEEEecCCC----ceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEcc-------
Confidence 457899999999976643332 78999999988654211 11123567778888877766432
Q ss_pred CCCCCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCccc
Q 004766 206 MDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEG 285 (732)
Q Consensus 206 ~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~ 285 (732)
..+||..+...... ..+-... -..+..+..|+|||+|++..... .+.+-++|++++.
T Consensus 149 -----------~~~I~vVdy~d~~~--~~~~~i~-~g~~~~D~~~dpdgry~~va~~~----sn~i~viD~~~~k----- 205 (369)
T PF02239_consen 149 -----------TGEIWVVDYSDPKN--LKVTTIK-VGRFPHDGGFDPDGRYFLVAANG----SNKIAVIDTKTGK----- 205 (369)
T ss_dssp -----------TTEEEEEETTTSSC--EEEEEEE---TTEEEEEE-TTSSEEEEEEGG----GTEEEEEETTTTE-----
T ss_pred -----------CCeEEEEEeccccc--cceeeec-ccccccccccCcccceeeecccc----cceeEEEeeccce-----
Confidence 23688888665421 1211111 12245678999999998765432 2467778876632
Q ss_pred ccccCCCCCcEEeee-ccc----ceEEEEEecCCeEEEEeCCCCCCceEEEEe------CCCCCCceEeccCCCCCceeE
Q 004766 286 FKKRDGLLPFVKLID-GFD----AQYEVIANDDTVFTFLTNKDAPKYKIIRVD------LKEPNDWFEVIPEAERDVLES 354 (732)
Q Consensus 286 ~~~~~~~~~~~~l~~-~~~----~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d------~~~~~~~~~l~~~~~~~~l~~ 354 (732)
...+.. +.. .......|....++...........++-.+ ..+-+..+++-... .. -.
T Consensus 206 ---------~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G--~g-lF 273 (369)
T PF02239_consen 206 ---------LVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQG--GG-LF 273 (369)
T ss_dssp ---------EEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SS--SS---
T ss_pred ---------EEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCC--Cc-ce
Confidence 111111 000 001111222222222222211100111112 11111112222122 11 22
Q ss_pred EEEecC-CEEEEEE-ecCCeeEEEEEeCCCCceeeecccccc-eeeEeecccCCcEEEEEEecCCCCceEEEEECCCCC
Q 004766 355 ATAVNL-NQMIVSY-LSDVKYVLQIRDLKNGSLLHQLPIEIG-SVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 430 (732)
Q Consensus 355 ~~~~~~-~~l~~~~-~~~g~~~l~~~d~~~g~~~~~l~~~~g-~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~~ 430 (732)
+...++ .++++.. .......|.++|.++-+....|....+ .+..+.+++||++++++.-.- -.++..||..+.+
T Consensus 274 i~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~--~~~i~v~D~~Tl~ 350 (369)
T PF02239_consen 274 IKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDG--NGAIVVYDAKTLK 350 (369)
T ss_dssp EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE----TTEEEEEETTTTE
T ss_pred eecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecC--CCEEEEEECCCcE
Confidence 444554 4555551 112246899999886655455543222 355788999999999875543 3389999987764
|
... |
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.00041 Score=76.33 Aligned_cols=177 Identities=12% Similarity=0.052 Sum_probs=94.0
Q ss_pred cEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEec-CCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCCCCcE
Q 004766 218 HEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTE-DGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFV 296 (732)
Q Consensus 218 ~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~ 296 (732)
..|.+|+++... -+.+|.. ..|+..++|.| |.+|.+ ..+- ..++.+|++...+ ..-|.
T Consensus 390 KTVRLWh~~~~~--CL~~F~H---ndfVTcVaFnPvDDryFi-SGSL----D~KvRiWsI~d~~-----------Vv~W~ 448 (712)
T KOG0283|consen 390 KTVRLWHPGRKE--CLKVFSH---NDFVTCVAFNPVDDRYFI-SGSL----DGKVRLWSISDKK-----------VVDWN 448 (712)
T ss_pred ccEEeecCCCcc--eeeEEec---CCeeEEEEecccCCCcEe-eccc----ccceEEeecCcCe-----------eEeeh
Confidence 368899998653 3466754 34888999999 566643 3322 2345566655421 00011
Q ss_pred EeeecccceEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCC---CceEeccC---CCCCceeEEEEecC--CEEEEEEe
Q 004766 297 KLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPN---DWFEVIPE---AERDVLESATAVNL--NQMIVSYL 368 (732)
Q Consensus 297 ~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~---~~~~l~~~---~~~~~l~~~~~~~~--~~l~~~~~ 368 (732)
.+. .-.....++|||+..++-+-. +....++..+.+ .+..-... .....|.++.+.++ +.++|+..
T Consensus 449 Dl~--~lITAvcy~PdGk~avIGt~~----G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSn 522 (712)
T KOG0283|consen 449 DLR--DLITAVCYSPDGKGAVIGTFN----GYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSN 522 (712)
T ss_pred hhh--hhheeEEeccCCceEEEEEec----cEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecC
Confidence 111 001123588998877765442 223334433322 01111110 01236888988864 45776654
Q ss_pred cCCeeEEEEEeCCCCceeeecccc--cceeeEeecccCCcEEEEEEecCCCCceEEEEECCC
Q 004766 369 SDVKYVLQIRDLKNGSLLHQLPIE--IGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKT 428 (732)
Q Consensus 369 ~~g~~~l~~~d~~~g~~~~~l~~~--~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~ 428 (732)
+ ++|+++|+.+-+.+..+... ..+-...+++.||+.|+... .-..+|.|+...
T Consensus 523 D---SrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~s----eDs~VYiW~~~~ 577 (712)
T KOG0283|consen 523 D---SRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSAS----EDSWVYIWKNDS 577 (712)
T ss_pred C---CceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEee----cCceEEEEeCCC
Confidence 4 58999997544444444422 11212445667998776443 345788888754
|
|
| >PF11339 DUF3141: Protein of unknown function (DUF3141); InterPro: IPR024501 This family of proteins appears to be predominantly expressed in Proteobacteria | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.0001 Score=77.61 Aligned_cols=101 Identities=19% Similarity=0.233 Sum_probs=65.5
Q ss_pred CCccEEEE----EcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCccHHHHHHHHHHHHH-
Q 004766 479 GSHPCLLY----GYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLI- 553 (732)
Q Consensus 479 ~~~P~vv~----~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~- 553 (732)
.+.|.||. +|| +|+..... ..+....|. .|.-|..+-+.--.+ ...+++|+..+....+
T Consensus 67 ~krP~vViDPRAGHG-pGIGGFK~-dSevG~AL~-~GHPvYFV~F~p~P~-------------pgQTl~DV~~ae~~Fv~ 130 (581)
T PF11339_consen 67 TKRPFVVIDPRAGHG-PGIGGFKP-DSEVGVALR-AGHPVYFVGFFPEPE-------------PGQTLEDVMRAEAAFVE 130 (581)
T ss_pred CCCCeEEeCCCCCCC-CCccCCCc-ccHHHHHHH-cCCCeEEEEecCCCC-------------CCCcHHHHHHHHHHHHH
Confidence 45677776 566 33321111 345556677 798777776653222 2346788776644332
Q ss_pred ---HcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEE-EcCCcc
Q 004766 554 ---SAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCAL-AHVGVM 596 (732)
Q Consensus 554 ---~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v-~~~p~~ 596 (732)
+..- +..|..++|.+.||.+++.+++.+|+++.-+| .++|+.
T Consensus 131 ~V~~~hp-~~~kp~liGnCQgGWa~~mlAA~~Pd~~gplvlaGaPls 176 (581)
T PF11339_consen 131 EVAERHP-DAPKPNLIGNCQGGWAAMMLAALRPDLVGPLVLAGAPLS 176 (581)
T ss_pred HHHHhCC-CCCCceEEeccHHHHHHHHHHhcCcCccCceeecCCCcc
Confidence 3322 23499999999999999999999999998775 566654
|
Their function is unknown. |
| >PF06342 DUF1057: Alpha/beta hydrolase of unknown function (DUF1057); InterPro: IPR010463 This entry consists of proteins of unknown function which have an alpha/beta hydrolase fold | Back alignment and domain information |
|---|
Probab=98.15 E-value=6.8e-05 Score=73.20 Aligned_cols=236 Identities=13% Similarity=-0.001 Sum_probs=133.8
Q ss_pred EEEEEEccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHh
Q 004766 452 HQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHK 531 (732)
Q Consensus 452 ~~~~~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~ 531 (732)
..+.+.+.+| ..+...-+|-.....+.+..+||-+||+||+..+-.|. ...|++.|+.++.+|++|.|-.....+
T Consensus 7 ~~~k~~~~~~-~~~~~~a~y~D~~~~gs~~gTVv~~hGsPGSH~DFkYi---~~~l~~~~iR~I~iN~PGf~~t~~~~~- 81 (297)
T PF06342_consen 7 KLVKFQAENG-KIVTVQAVYEDSLPSGSPLGTVVAFHGSPGSHNDFKYI---RPPLDEAGIRFIGINYPGFGFTPGYPD- 81 (297)
T ss_pred EEEEcccccC-ceEEEEEEEEecCCCCCCceeEEEecCCCCCccchhhh---hhHHHHcCeEEEEeCCCCCCCCCCCcc-
Confidence 3455666777 67777766766554455667999999999997665553 456777999999999999874322111
Q ss_pred cccccCCccHHHHHHHHHHHHHHc-CCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCcc-cc-----------
Q 004766 532 GGALAKKQNCFDDFISASEYLISA-GYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVM-DM----------- 598 (732)
Q Consensus 532 ~~~~~~~~~~~~D~~~~~~~l~~~-~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~-d~----------- 598 (732)
. ..+-.+-..-++.|.++ +. + +++.++|||.|+-.++.++..+|- .++++..|.- -+
T Consensus 82 -----~-~~~n~er~~~~~~ll~~l~i-~-~~~i~~gHSrGcenal~la~~~~~--~g~~lin~~G~r~HkgIrp~~r~~ 151 (297)
T PF06342_consen 82 -----Q-QYTNEERQNFVNALLDELGI-K-GKLIFLGHSRGCENALQLAVTHPL--HGLVLINPPGLRPHKGIRPLSRME 151 (297)
T ss_pred -----c-ccChHHHHHHHHHHHHHcCC-C-CceEEEEeccchHHHHHHHhcCcc--ceEEEecCCccccccCcCHHHHHH
Confidence 1 11223333334444444 43 3 799999999999999999998873 3444443321 00
Q ss_pred -ccc----ccCCCCC----ccccccCCC--CCHHHHHHHHhcCcc------cCCCCCCCCCCCCCCCCCeEEEEeeCCCC
Q 004766 599 -LRY----HKFTIGH----AWVSDFGCS--EEEEEFYWLIKYSPL------HNVRRPWEQNPDKPFQYPSTLLLTADHDD 661 (732)
Q Consensus 599 -~~~----~~~~~~~----~~~~~~g~p--~~~~~~~~~~~~sp~------~~~~~~~~~~~~~~~~~~p~Li~~g~~D~ 661 (732)
+.+ .....+. ..+.-+|-- .-.+....++...-. .+++... ....|+|+..|.+|.
T Consensus 152 ~i~~l~~~lp~~~~~~i~~~~y~~iG~KV~~GeeA~na~r~m~~~df~~q~~~I~~ln-------~~~ikvli~ygg~Dh 224 (297)
T PF06342_consen 152 TINYLYDLLPRFIINAIMYFYYRMIGFKVSDGEEAINAMRSMQNCDFEEQKEYIDKLN-------KKPIKVLIAYGGKDH 224 (297)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHhCeeecChHHHHHHHHHHHhcCHHHHHHHHHHhc-------cCCCcEEEEEcCcch
Confidence 000 0000000 000112321 122333334432211 1122111 134799999999999
Q ss_pred CCCchHHHHHHHHHHHhhcCCC-----C--------CCCCCCCEEEEEeCCCCCCCCCchH
Q 004766 662 RVVPLHSLKLLATMQYVLCTSL-----E--------NSPQTNPIIGRIERKAGHGVGLPTQ 709 (732)
Q Consensus 662 ~v~~~~~~~~~~~l~~~~~~~~-----~--------~~~~~~~~~~~~~~~~gH~~~~~~~ 709 (732)
.|--+.+..++.+.+....-.. + .-+++..-.-.++...||...+.+.
T Consensus 225 LIEeeI~~E~a~~f~~l~Hf~~~~~~seee~~kI~~~f~~~~~~~sv~f~~dgHf~qK~~A 285 (297)
T PF06342_consen 225 LIEEEISFEFAMKFKGLDHFNIEKEISEEEKPKILKSFASGQKGASVFFAKDGHFQQKFRA 285 (297)
T ss_pred hhHHHHHHHHHHHhCCccceeeecCCChhHHHHHHHHHhcCCceeEEEEecCChHHhHHHH
Confidence 9987778777776654311100 0 0122444555677888998766443
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.00039 Score=75.38 Aligned_cols=221 Identities=14% Similarity=0.151 Sum_probs=132.0
Q ss_pred eEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecccc-cceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccC
Q 004766 136 KVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADAL-SWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDS 214 (732)
Q Consensus 136 ~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~-~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~ 214 (732)
...|-|-+++|.... ....|-|+|+.+...+.... ......+++-+||++.++..+.+.
T Consensus 417 ~~~Fvpgd~~Iv~G~-----k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDk--------------- 476 (888)
T KOG0306|consen 417 ASKFVPGDRYIVLGT-----KNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADK--------------- 476 (888)
T ss_pred EEEecCCCceEEEec-----cCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCc---------------
Confidence 455788888877553 23478999999887553222 122357888899999998876443
Q ss_pred CcccEEEEEECC--C--CCCCCe-------EEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCc
Q 004766 215 NLYHEFYYHFLG--T--KQSEDI-------LCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGL 283 (732)
Q Consensus 215 ~~~~~v~~~~lg--t--~~~~~~-------~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~ 283 (732)
.|..|+.. . +..+.. ...+.++ -+..+.+||||++|++..-+. +-.+|.+|.=.-
T Consensus 477 ----tVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~d---dvL~v~~Spdgk~LaVsLLdn---TVkVyflDtlKF---- 542 (888)
T KOG0306|consen 477 ----TVKFWDFKLVVSVPGTQKKVLSLKHTRTLELED---DVLCVSVSPDGKLLAVSLLDN---TVKVYFLDTLKF---- 542 (888)
T ss_pred ----EEEEEeEEEEeccCcccceeeeeccceEEeccc---cEEEEEEcCCCcEEEEEeccC---eEEEEEecceee----
Confidence 23333221 0 111111 1222232 246789999999999887544 356777763210
Q ss_pred ccccccCCCCCcEEeeecccceEE-EEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecCCE
Q 004766 284 EGFKKRDGLLPFVKLIDGFDAQYE-VIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQ 362 (732)
Q Consensus 284 ~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~~ 362 (732)
...|-...-+... -+|||++.++ ....+ .+.++|-.|. |.+-+.+++|+ ..+-.+.+.|..+
T Consensus 543 -----------flsLYGHkLPV~smDIS~DSkliv-TgSAD-KnVKiWGLdF--GDCHKS~fAHd--DSvm~V~F~P~~~ 605 (888)
T KOG0306|consen 543 -----------FLSLYGHKLPVLSMDISPDSKLIV-TGSAD-KNVKIWGLDF--GDCHKSFFAHD--DSVMSVQFLPKTH 605 (888)
T ss_pred -----------eeeecccccceeEEeccCCcCeEE-eccCC-CceEEecccc--chhhhhhhccc--CceeEEEEcccce
Confidence 1112111111111 3788877554 33322 3556666554 44457788887 5566788888788
Q ss_pred EEEEEecCCeeEEEEEeCCCCceeeecccccceeeEeecccCCcEEE
Q 004766 363 MIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVF 409 (732)
Q Consensus 363 l~~~~~~~g~~~l~~~d~~~g~~~~~l~~~~g~v~~~~~s~d~~~l~ 409 (732)
++|+...++ .+..||-+.=+.++.+..+...+..++.+|+|+.++
T Consensus 606 ~FFt~gKD~--kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vv 650 (888)
T KOG0306|consen 606 LFFTCGKDG--KVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVV 650 (888)
T ss_pred eEEEecCcc--eEEeechhhhhhheeeccchheeeeeEEcCCCCeEE
Confidence 999999884 788898542233345554556677778888887443
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.00096 Score=67.94 Aligned_cols=238 Identities=15% Similarity=0.180 Sum_probs=140.1
Q ss_pred EEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecccccce-eeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcc
Q 004766 134 LIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWF-KFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTET 212 (732)
Q Consensus 134 ~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~~~~-~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~ 212 (732)
+..+..+|....++ .|.+..++.++|..+++.+..-.+.. ....+.++||.+.++..+.
T Consensus 222 i~ald~~~s~~~il-----TGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSa--------------- 281 (506)
T KOG0289|consen 222 ITALDIIPSSSKIL-----TGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASA--------------- 281 (506)
T ss_pred eeEEeecCCCCcce-----ecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCC---------------
Confidence 33445555533343 33444578889988888665333322 3467788888876665432
Q ss_pred cCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCC
Q 004766 213 DSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGL 292 (732)
Q Consensus 213 ~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~ 292 (732)
...|++|..+...... +....+ .-+..+...|.|.|++..++++. +...|..++.
T Consensus 282 ----d~~i~vws~~~~s~~~--~~~~h~--~~V~~ls~h~tgeYllsAs~d~~-----w~Fsd~~~g~------------ 336 (506)
T KOG0289|consen 282 ----DEIIRVWSVPLSSEPT--SSRPHE--EPVTGLSLHPTGEYLLSASNDGT-----WAFSDISSGS------------ 336 (506)
T ss_pred ----cceEEeeccccccCcc--cccccc--ccceeeeeccCCcEEEEecCCce-----EEEEEccCCc------------
Confidence 2357777777654322 211111 22456778899999987665443 3334555431
Q ss_pred CCcEEeee-cccceEE--EEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecCCEEEEEEec
Q 004766 293 LPFVKLID-GFDAQYE--VIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLS 369 (732)
Q Consensus 293 ~~~~~l~~-~~~~~~~--~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~~l~~~~~~ 369 (732)
....... ..+..+. .|.||| ++|.+. .++..|-.+|++.+.+... +|.. ...+..+.++.+++.+++..+
T Consensus 337 -~lt~vs~~~s~v~~ts~~fHpDg--Lifgtg--t~d~~vkiwdlks~~~~a~-Fpgh-t~~vk~i~FsENGY~Lat~ad 409 (506)
T KOG0289|consen 337 -QLTVVSDETSDVEYTSAAFHPDG--LIFGTG--TPDGVVKIWDLKSQTNVAK-FPGH-TGPVKAISFSENGYWLATAAD 409 (506)
T ss_pred -EEEEEeeccccceeEEeeEcCCc--eEEecc--CCCceEEEEEcCCcccccc-CCCC-CCceeEEEeccCceEEEEEec
Confidence 1222222 1223333 478887 444443 3466788899988763333 3432 467899999987887777777
Q ss_pred CCeeEEEEEeCCCCceeeeccccc-ceeeEeecccCCcEEEEEEecCCCCceEEEEECCCC
Q 004766 370 DVKYVLQIRDLKNGSLLHQLPIEI-GSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTE 429 (732)
Q Consensus 370 ~g~~~l~~~d~~~g~~~~~l~~~~-g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~ 429 (732)
++ .+.+||+..-+..+.++++. ..+..++++..|..+.+..+ --++|.++-.+.
T Consensus 410 d~--~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~----~l~Vy~~~k~~k 464 (506)
T KOG0289|consen 410 DG--SVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGS----DLQVYICKKKTK 464 (506)
T ss_pred CC--eEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecc----eeEEEEEecccc
Confidence 75 38999997555556676663 34557777777776665422 235777765444
|
|
| >COG1073 Hydrolases of the alpha/beta superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.12 E-value=2.4e-05 Score=80.92 Aligned_cols=241 Identities=14% Similarity=0.085 Sum_probs=127.0
Q ss_pred EEccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccc
Q 004766 456 VPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGAL 535 (732)
Q Consensus 456 ~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~ 535 (732)
+....+ ..+.+.+..|++....++.|+++..||.......... ....++..++.++..+....++.+-..+...
T Consensus 25 ~~~~~~-~~~~~~l~~p~~~~~~~~~p~v~~~h~~~~~~~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~-- 98 (299)
T COG1073 25 LANRTG-IALAAVLHLPPSGNEEKKLPAVVFLHGFGSSKEQSLG---YAVLLAEKGYRVLAGDASLFGESGGDPRGLA-- 98 (299)
T ss_pred cccccC-ceeeeEEEecCCCCccccCceEEeccCccccccCcch---HHHHhhhceeEEeeecccccccccccccccc--
Confidence 333344 5678888888875444689999999997665433222 3445665888877776411111110000000
Q ss_pred cCCccHHHHHHHHHHHHHH---------cCCCCCCcEEEEecChhHHHHHHHHhhCC---CeeeEEEEcCCccccccccc
Q 004766 536 AKKQNCFDDFISASEYLIS---------AGYTQSRKLCIEGGSNGGLLVGACINQRP---DLFGCALAHVGVMDMLRYHK 603 (732)
Q Consensus 536 ~~~~~~~~D~~~~~~~l~~---------~~~~d~~~i~i~G~S~GG~l~~~~~~~~p---~~f~a~v~~~p~~d~~~~~~ 603 (732)
.......++......... ......++..+.|.+.||..+...+...+ +..+.++...++-.......
T Consensus 99 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~g~~~~~~~ 177 (299)
T COG1073 99 -DSEGYAEDFSAAVLLLLSEGVLDKDYRLLGASLGPRILAGLSLGGPSAGALLAWGPTRLDASRIVVWGESLGGALALLL 177 (299)
T ss_pred -CccccccccchhheeeeccccccHHHHHHhhhcCcceEEEEEeeccchHHHhhcchhHHHhhcccceeeccCceeeccc
Confidence 000001111111110000 00112357788888888887777777655 22222222221111100000
Q ss_pred C--------CCCCccc-----ccc-CCC-----CCHHHHHHHHhcCcccCCCCCCCCCCCCCCCC-CeEEEEeeCCCCCC
Q 004766 604 F--------TIGHAWV-----SDF-GCS-----EEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQY-PSTLLLTADHDDRV 663 (732)
Q Consensus 604 ~--------~~~~~~~-----~~~-g~p-----~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~-~p~Li~~g~~D~~v 663 (732)
. ....... ... ..+ .... ...+...+++..+.. +. .|+|++||.+|..|
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~----------i~~~P~l~~~G~~D~~v 246 (299)
T COG1073 178 LGANPELARELIDYLITPGGFAPLPAPEAPLDTLPLR-AVLLLLLDPFDDAEK----------ISPRPVLLVHGERDEVV 246 (299)
T ss_pred cccchHHHHhhhhhhccCCCCCCCCcccccccccccc-hhhhccCcchhhHhh----------cCCcceEEEecCCCccc
Confidence 0 0000000 000 000 0011 122455566666665 44 59999999999999
Q ss_pred CchHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeCCCCCCCCC-chHHHHHHHHHHHHHHHHHh
Q 004766 664 VPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGL-PTQKMIDEAADRYGFMAKML 726 (732)
Q Consensus 664 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~-~~~~~~~~~~~~~~fl~~~l 726 (732)
|..++.+++.+.+. .+..+.++++++|.... ......+.+.++..||.++|
T Consensus 247 p~~~~~~~~~~~~~------------~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~f~~~~l 298 (299)
T COG1073 247 PLRDAEDLYEAARE------------RPKKLLFVPGGGHIDLYDNPPAVEQALDKLAEFLERHL 298 (299)
T ss_pred chhhhHHHHhhhcc------------CCceEEEecCCccccccCccHHHHHHHHHHHHHHHHhc
Confidence 99999999988774 26788888999999774 22222467778889998876
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.00037 Score=74.39 Aligned_cols=237 Identities=10% Similarity=0.045 Sum_probs=144.9
Q ss_pred EEEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceeccc-ccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCC
Q 004766 132 AALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADA-LSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGT 210 (732)
Q Consensus 132 ~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~-~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~ 210 (732)
+.+.-+.|| ..+.||.++. ..+|+|+..+|..+... .....+.++.|+++|+.|+....++
T Consensus 178 fY~nlldWs-s~n~laValg------~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g----------- 239 (484)
T KOG0305|consen 178 FYLNLLDWS-SANVLAVALG------QSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDG----------- 239 (484)
T ss_pred HhhhHhhcc-cCCeEEEEec------ceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCC-----------
Confidence 445567799 4557887752 47999999999854422 2122358999999999999986443
Q ss_pred cccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccC
Q 004766 211 ETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRD 290 (732)
Q Consensus 211 ~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~ 290 (732)
.|.+|++.+...... + .+ .+...+..++|. + .++..... + ..|...|+......
T Consensus 240 --------~v~iwD~~~~k~~~~-~-~~-~h~~rvg~laW~--~-~~lssGsr-~---~~I~~~dvR~~~~~-------- 293 (484)
T KOG0305|consen 240 --------TVQIWDVKEQKKTRT-L-RG-SHASRVGSLAWN--S-SVLSSGSR-D---GKILNHDVRISQHV-------- 293 (484)
T ss_pred --------eEEEEehhhcccccc-c-cC-CcCceeEEEecc--C-ceEEEecC-C---CcEEEEEEecchhh--------
Confidence 578888765432211 1 11 123455677887 2 22233222 1 23555555442110
Q ss_pred CCCCcEEeeecccceEE--EEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEec-CCEEEEEE
Q 004766 291 GLLPFVKLIDGFDAQYE--VIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVN-LNQMIVSY 367 (732)
Q Consensus 291 ~~~~~~~l~~~~~~~~~--~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~-~~~l~~~~ 367 (732)
.. ...+...++. .|++|+..++- ++....+..+|.........+..+. ..+..+.|.+ ...|+++.
T Consensus 294 ----~~-~~~~H~qeVCgLkws~d~~~lAS----GgnDN~~~Iwd~~~~~p~~~~~~H~--aAVKA~awcP~q~~lLAsG 362 (484)
T KOG0305|consen 294 ----VS-TLQGHRQEVCGLKWSPDGNQLAS----GGNDNVVFIWDGLSPEPKFTFTEHT--AAVKALAWCPWQSGLLATG 362 (484)
T ss_pred ----hh-hhhcccceeeeeEECCCCCeecc----CCCccceEeccCCCccccEEEeccc--eeeeEeeeCCCccCceEEc
Confidence 11 1111112222 48999887763 2335578888885555445666665 5677888887 25577776
Q ss_pred ecCCeeEEEEEeCCCCceeeecccccceeeEeecccCCcEEEEEEecCCCCceEEEE
Q 004766 368 LSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQC 424 (732)
Q Consensus 368 ~~~g~~~l~~~d~~~g~~~~~l~~~~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~ 424 (732)
.......|..|+..+|+.+..+. ....|..+.+++..+++..+......--+||.|
T Consensus 363 GGs~D~~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ 418 (484)
T KOG0305|consen 363 GGSADRCIKFWNTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQITLWKY 418 (484)
T ss_pred CCCcccEEEEEEcCCCcEecccc-cCCceeeEEEcCCCCEEEEecCCCCCcEEEEec
Confidence 65556799999998888765554 245678889999998887665544333344544
|
|
| >COG0596 MhpC Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00014 Score=73.03 Aligned_cols=103 Identities=17% Similarity=0.049 Sum_probs=65.0
Q ss_pred ccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCccHHHHHHHHHHHHHHcCCCCC
Q 004766 481 HPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQS 560 (732)
Q Consensus 481 ~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~ 560 (732)
.|.++++||.++.................+ |.++.+|.||.|... . . ..........+..+.+.- ..
T Consensus 21 ~~~i~~~hg~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~g~g~s~----~---~---~~~~~~~~~~~~~~~~~~--~~ 87 (282)
T COG0596 21 GPPLVLLHGFPGSSSVWRPVFKVLPALAAR-YRVIAPDLRGHGRSD----P---A---GYSLSAYADDLAALLDAL--GL 87 (282)
T ss_pred CCeEEEeCCCCCchhhhHHHHHHhhccccc-eEEEEecccCCCCCC----c---c---cccHHHHHHHHHHHHHHh--CC
Confidence 559999999987644333211111111113 999999999877654 0 0 111122233333333321 12
Q ss_pred CcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCcc
Q 004766 561 RKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVM 596 (732)
Q Consensus 561 ~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~ 596 (732)
.++.+.|+|+||.++..++.++|+.++++|...+..
T Consensus 88 ~~~~l~G~S~Gg~~~~~~~~~~p~~~~~~v~~~~~~ 123 (282)
T COG0596 88 EKVVLVGHSMGGAVALALALRHPDRVRGLVLIGPAP 123 (282)
T ss_pred CceEEEEecccHHHHHHHHHhcchhhheeeEecCCC
Confidence 349999999999999999999999999998877543
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.0021 Score=62.93 Aligned_cols=241 Identities=12% Similarity=0.100 Sum_probs=126.7
Q ss_pred EeEEECCCCcEEEEEEeccCCceEEEEEEECCCCc---eecccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCc
Q 004766 135 IKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQI---VEADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTE 211 (732)
Q Consensus 135 ~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~---~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~ 211 (732)
...+||+-|.+||..... ..+.|||+.|-. .+...... ..+++||+||+.|+-++
T Consensus 27 ~~~~Fs~~G~~lAvGc~n-----G~vvI~D~~T~~iar~lsaH~~p--i~sl~WS~dgr~LltsS--------------- 84 (405)
T KOG1273|consen 27 ECCQFSRWGDYLAVGCAN-----GRVVIYDFDTFRIARMLSAHVRP--ITSLCWSRDGRKLLTSS--------------- 84 (405)
T ss_pred ceEEeccCcceeeeeccC-----CcEEEEEccccchhhhhhccccc--eeEEEecCCCCEeeeec---------------
Confidence 368899999999988642 368889998755 23222222 48899999999888764
Q ss_pred ccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCC
Q 004766 212 TDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDG 291 (732)
Q Consensus 212 ~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 291 (732)
+...+.+|++-.+..-..+.|.. + +.+..|.|-.+..++..--.. .-++++...+.
T Consensus 85 ----~D~si~lwDl~~gs~l~rirf~s---p--v~~~q~hp~k~n~~va~~~~~----sp~vi~~s~~~----------- 140 (405)
T KOG1273|consen 85 ----RDWSIKLWDLLKGSPLKRIRFDS---P--VWGAQWHPRKRNKCVATIMEE----SPVVIDFSDPK----------- 140 (405)
T ss_pred ----CCceeEEEeccCCCceeEEEccC---c--cceeeeccccCCeEEEEEecC----CcEEEEecCCc-----------
Confidence 34468888886654333333422 2 235666664443333221111 13445554321
Q ss_pred CCCcEEeeecccc------eEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCC--ceEeccCCCCCceeEEEEecCCEE
Q 004766 292 LLPFVKLIDGFDA------QYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPND--WFEVIPEAERDVLESATAVNLNQM 363 (732)
Q Consensus 292 ~~~~~~l~~~~~~------~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~--~~~l~~~~~~~~l~~~~~~~~~~l 363 (732)
-..|..+.+. +..++.+.|++++.-+ ..++|..++..+.+. +-.++. -..|..+.++..+..
T Consensus 141 ---h~~Lp~d~d~dln~sas~~~fdr~g~yIitGt----sKGkllv~~a~t~e~vas~rits---~~~IK~I~~s~~g~~ 210 (405)
T KOG1273|consen 141 ---HSVLPKDDDGDLNSSASHGVFDRRGKYIITGT----SKGKLLVYDAETLECVASFRITS---VQAIKQIIVSRKGRF 210 (405)
T ss_pred ---eeeccCCCccccccccccccccCCCCEEEEec----CcceEEEEecchheeeeeeeech---heeeeEEEEeccCcE
Confidence 0111111111 1123667788777533 245788888777541 112222 134666666643443
Q ss_pred EEEEecCCeeEEEEEeCC---C-Cceeeecccc---cc-----eeeEeecccCCcEEEEEEecCCCCceEEEEECCCCCC
Q 004766 364 IVSYLSDVKYVLQIRDLK---N-GSLLHQLPIE---IG-----SVNAISARREDSVVFISFTSFLIPGIVYQCNLKTETP 431 (732)
Q Consensus 364 ~~~~~~~g~~~l~~~d~~---~-g~~~~~l~~~---~g-----~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~~~ 431 (732)
++.-..| ..|+.++.. + |+. ..++.. .. ......+|.+|.++. .+| .....+|.+....|.+
T Consensus 211 liiNtsD--RvIR~ye~~di~~~~r~-~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~--a~s-~~aHaLYIWE~~~GsL 284 (405)
T KOG1273|consen 211 LIINTSD--RVIRTYEISDIDDEGRD-GEVEPEHKLQDVVNKLQWKKCCFSGDGEYVC--AGS-ARAHALYIWEKSIGSL 284 (405)
T ss_pred EEEecCC--ceEEEEehhhhcccCcc-CCcChhHHHHHHHhhhhhhheeecCCccEEE--ecc-ccceeEEEEecCCcce
Confidence 3333333 245666543 1 111 111110 11 112233455665433 333 6678999999888862
Q ss_pred ceEEEEe
Q 004766 432 EMKIFRE 438 (732)
Q Consensus 432 ~~~~l~~ 438 (732)
.++|..
T Consensus 285 -VKILhG 290 (405)
T KOG1273|consen 285 -VKILHG 290 (405)
T ss_pred -eeeecC
Confidence 455543
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.0037 Score=74.16 Aligned_cols=221 Identities=13% Similarity=0.077 Sum_probs=120.6
Q ss_pred EEeEEECCC-CcEEEEEEeccCCceEEEEEEECCCCceecccc-cceeeeeEEEEe-CCcEEEEEEecCCCCCCCCCCCC
Q 004766 134 LIKVSVSED-AKYLAYALSYSGSDWATIKLMRIEDQIVEADAL-SWFKFSSIAWTH-DSKGFFYSRYPAPKEGKDMDAGT 210 (732)
Q Consensus 134 ~~~~~~SPD-G~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~-~~~~~~~~~Wsp-Dg~~l~y~~~~~~~~~~~~~~~~ 210 (732)
+..+.|+|. +++||-+ + ...+|++||+.+++.+.... .......++|+| |+..|+....
T Consensus 535 v~~l~~~~~~~~~las~-~----~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~------------- 596 (793)
T PLN00181 535 LSGICWNSYIKSQVASS-N----FEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSD------------- 596 (793)
T ss_pred eeeEEeccCCCCEEEEE-e----CCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcC-------------
Confidence 556788775 5666533 2 23589999999887553221 122347899997 6776665532
Q ss_pred cccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEE-ecCCcEEEEEEecCCcceEEEEEEeCCCCCCCccccccc
Q 004766 211 ETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHV-TEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKR 289 (732)
Q Consensus 211 ~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~-SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~ 289 (732)
...|.+|++.++.. +..+... .....+.| +++|.+|+..+.+ ..|+++|+....
T Consensus 597 ------Dg~v~iWd~~~~~~--~~~~~~~---~~v~~v~~~~~~g~~latgs~d-----g~I~iwD~~~~~--------- 651 (793)
T PLN00181 597 ------DGSVKLWSINQGVS--IGTIKTK---ANICCVQFPSESGRSLAFGSAD-----HKVYYYDLRNPK--------- 651 (793)
T ss_pred ------CCEEEEEECCCCcE--EEEEecC---CCeEEEEEeCCCCCEEEEEeCC-----CeEEEEECCCCC---------
Confidence 23688999876532 1222221 12446677 4578888766543 358889987531
Q ss_pred CCCCCcEEeeecccceE-EEEEecCCeEEEEeCCCCCCceEEEEeCCCC------CCceEeccCCCCCceeEEEEecCCE
Q 004766 290 DGLLPFVKLIDGFDAQY-EVIANDDTVFTFLTNKDAPKYKIIRVDLKEP------NDWFEVIPEAERDVLESATAVNLNQ 362 (732)
Q Consensus 290 ~~~~~~~~l~~~~~~~~-~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~------~~~~~l~~~~~~~~l~~~~~~~~~~ 362 (732)
.+...+........ ..|. ++..|+..+. ...|..+|+..+ .....+..+. ..+..+.+++++.
T Consensus 652 ---~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~----D~~ikiWd~~~~~~~~~~~~l~~~~gh~--~~i~~v~~s~~~~ 721 (793)
T PLN00181 652 ---LPLCTMIGHSKTVSYVRFV-DSSTLVSSST----DNTLKLWDLSMSISGINETPLHSFMGHT--NVKNFVGLSVSDG 721 (793)
T ss_pred ---ccceEecCCCCCEEEEEEe-CCCEEEEEEC----CCEEEEEeCCCCccccCCcceEEEcCCC--CCeeEEEEcCCCC
Confidence 11222222111111 2354 5666554333 235667776532 1223343333 3455677776566
Q ss_pred EEEEEecCCeeEEEEEeCCCCceeeecc-----------c--ccceeeEeecccCCcEEE
Q 004766 363 MIVSYLSDVKYVLQIRDLKNGSLLHQLP-----------I--EIGSVNAISARREDSVVF 409 (732)
Q Consensus 363 l~~~~~~~g~~~l~~~d~~~g~~~~~l~-----------~--~~g~v~~~~~s~d~~~l~ 409 (732)
++++...++ .|++|+...+....... . ....|..+.+++++..++
T Consensus 722 ~lasgs~D~--~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lv 779 (793)
T PLN00181 722 YIATGSETN--EVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLV 779 (793)
T ss_pred EEEEEeCCC--EEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEE
Confidence 777777774 67788865432211110 0 123466677777776544
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.0012 Score=68.35 Aligned_cols=229 Identities=15% Similarity=0.171 Sum_probs=138.0
Q ss_pred EEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecc-cccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcc
Q 004766 134 LIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEAD-ALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTET 212 (732)
Q Consensus 134 ~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~-~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~ 212 (732)
+.+..|=.||+++| .|++...+.|+|..+...+.. ...........|+|++.+++....|.
T Consensus 71 v~s~~fR~DG~Lla-----aGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd------------- 132 (487)
T KOG0310|consen 71 VYSVDFRSDGRLLA-----AGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDD------------- 132 (487)
T ss_pred eeEEEeecCCeEEE-----ccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCC-------------
Confidence 56788999999988 446667899999766433321 11111235677899988888775443
Q ss_pred cCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCC
Q 004766 213 DSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGL 292 (732)
Q Consensus 213 ~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~ 292 (732)
..+.+|++.+.. ..++...+..++...+|+|-..+|+++.+-. ..|.++|+....
T Consensus 133 -----~v~k~~d~s~a~----v~~~l~~htDYVR~g~~~~~~~hivvtGsYD----g~vrl~DtR~~~------------ 187 (487)
T KOG0310|consen 133 -----KVVKYWDLSTAY----VQAELSGHTDYVRCGDISPANDHIVVTGSYD----GKVRLWDTRSLT------------ 187 (487)
T ss_pred -----ceEEEEEcCCcE----EEEEecCCcceeEeeccccCCCeEEEecCCC----ceEEEEEeccCC------------
Confidence 346778887653 2444555556888899999999988876432 346667765521
Q ss_pred CCcEEeeecccceEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCC-CCCceeEEEEecCCEEEEEEecCC
Q 004766 293 LPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEA-ERDVLESATAVNLNQMIVSYLSDV 371 (732)
Q Consensus 293 ~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~-~~~~l~~~~~~~~~~l~~~~~~~g 371 (732)
.....+-.+...+...+-|.|..++- .++ ..+-.+|+.++. +.+..-. ....+..+.+..++.-+++..-|+
T Consensus 188 ~~v~elnhg~pVe~vl~lpsgs~ias---AgG--n~vkVWDl~~G~--qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~ 260 (487)
T KOG0310|consen 188 SRVVELNHGCPVESVLALPSGSLIAS---AGG--NSVKVWDLTTGG--QLLTSMFNHNKTVTCLRLASDSTRLLSGSLDR 260 (487)
T ss_pred ceeEEecCCCceeeEEEcCCCCEEEE---cCC--CeEEEEEecCCc--eehhhhhcccceEEEEEeecCCceEeeccccc
Confidence 11222222222222235566666553 123 346678888665 2222211 224577777776556566666664
Q ss_pred eeEEEEEeCCCCceeeecccccceeeEeecccCCcEEEEEEecC
Q 004766 372 KYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSF 415 (732)
Q Consensus 372 ~~~l~~~d~~~g~~~~~l~~~~g~v~~~~~s~d~~~l~~~~ss~ 415 (732)
++.++|..+=+.+.....| +.|-+++.++|+..+++..++-
T Consensus 261 --~VKVfd~t~~Kvv~s~~~~-~pvLsiavs~dd~t~viGmsnG 301 (487)
T KOG0310|consen 261 --HVKVFDTTNYKVVHSWKYP-GPVLSIAVSPDDQTVVIGMSNG 301 (487)
T ss_pred --ceEEEEccceEEEEeeecc-cceeeEEecCCCceEEEecccc
Confidence 6777776444444444444 4556788899988888776653
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.0083 Score=61.00 Aligned_cols=248 Identities=13% Similarity=0.120 Sum_probs=128.7
Q ss_pred EeEEECCCCcEEEEEEe-----ccCCceEEEEEEECCCCcee-----ccc---ccceeeeeEEEEeCCcEEEEEEecCCC
Q 004766 135 IKVSVSEDAKYLAYALS-----YSGSDWATIKLMRIEDQIVE-----ADA---LSWFKFSSIAWTHDSKGFFYSRYPAPK 201 (732)
Q Consensus 135 ~~~~~SPDG~~la~~~~-----~~G~e~~~i~v~dl~~g~~~-----~~~---~~~~~~~~~~WspDg~~l~y~~~~~~~ 201 (732)
+.+.+||||+.+..... ..|...--|-+||.+|=.+. +.. ........++.|+|||++++.-.-.
T Consensus 39 ~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TP-- 116 (342)
T PF06433_consen 39 GNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTP-- 116 (342)
T ss_dssp EEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESS--
T ss_pred CceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCC--
Confidence 46889999999886532 22444446889999875432 211 0011125678999999888764321
Q ss_pred CCCCCCCCCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCC
Q 004766 202 EGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPE 281 (732)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~ 281 (732)
...|-+.|+.... .+-+ -+.+++. .+.-++..++..++. ++. -....+|.++.+
T Consensus 117 ---------------a~SVtVVDl~~~k----vv~e-i~~PGC~-~iyP~~~~~F~~lC~-DGs---l~~v~Ld~~Gk~- 170 (342)
T PF06433_consen 117 ---------------ATSVTVVDLAAKK----VVGE-IDTPGCW-LIYPSGNRGFSMLCG-DGS---LLTVTLDADGKE- 170 (342)
T ss_dssp ---------------SEEEEEEETTTTE----EEEE-EEGTSEE-EEEEEETTEEEEEET-TSC---EEEEEETSTSSE-
T ss_pred ---------------CCeEEEEECCCCc----eeee-ecCCCEE-EEEecCCCceEEEec-CCc---eEEEEECCCCCE-
Confidence 1246677776432 2322 2234443 223333334433332 221 111222322211
Q ss_pred CcccccccCCCCCcEEeeecccc--e----EEEEEecCCeEEEEeCCCCCCceEEEEeCCCCC-----CceEeccCC--C
Q 004766 282 GLEGFKKRDGLLPFVKLIDGFDA--Q----YEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPN-----DWFEVIPEA--E 348 (732)
Q Consensus 282 ~~~~~~~~~~~~~~~~l~~~~~~--~----~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~-----~~~~l~~~~--~ 348 (732)
.+..+.-++. + ...++.++.+++|.+-. ++|+.+|+.+.. .|..+...+ +
T Consensus 171 -------------~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~----G~v~~~dlsg~~~~~~~~~~~~t~~e~~~ 233 (342)
T PF06433_consen 171 -------------AQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYE----GNVYSADLSGDSAKFGKPWSLLTDAEKAD 233 (342)
T ss_dssp -------------EEEEEEESSTTTS-B-S--EEETTTTEEEEEBTT----SEEEEEEETTSSEEEEEEEESS-HHHHHT
T ss_pred -------------eEeeccccCCCCcccccccceECCCCeEEEEecC----CEEEEEeccCCcccccCcccccCcccccc
Confidence 1111111111 1 12355567789987764 479999987764 122111110 0
Q ss_pred CCc---eeEEEEec-CCEEEEEEecC-------CeeEEEEEeCCCCceeeecccccceeeEeecccCCcEEEEEEecCCC
Q 004766 349 RDV---LESATAVN-LNQMIVSYLSD-------VKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLI 417 (732)
Q Consensus 349 ~~~---l~~~~~~~-~~~l~~~~~~~-------g~~~l~~~d~~~g~~~~~l~~~~g~v~~~~~s~d~~~l~~~~ss~~~ 417 (732)
+.. .+.+++.+ .++||+.-..+ +-.+||++|+++++.+.+|+++. .+.+++.+.|.+=++|..+. .
T Consensus 234 ~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~-~~~Si~Vsqd~~P~L~~~~~--~ 310 (342)
T PF06433_consen 234 GWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEH-PIDSIAVSQDDKPLLYALSA--G 310 (342)
T ss_dssp TEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEE-EESEEEEESSSS-EEEEEET--T
T ss_pred CcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCC-ccceEEEccCCCcEEEEEcC--C
Confidence 111 12245543 36787765432 33699999999999888998752 34456666676656655544 2
Q ss_pred CceEEEEECCCCC
Q 004766 418 PGIVYQCNLKTET 430 (732)
Q Consensus 418 p~~~y~~d~~~~~ 430 (732)
-..++.+|..+|+
T Consensus 311 ~~~l~v~D~~tGk 323 (342)
T PF06433_consen 311 DGTLDVYDAATGK 323 (342)
T ss_dssp TTEEEEEETTT--
T ss_pred CCeEEEEeCcCCc
Confidence 3689999999986
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >PF02273 Acyl_transf_2: Acyl transferase; InterPro: IPR003157 LuxD proteins are bacterial acyl transferases | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00041 Score=65.86 Aligned_cols=213 Identities=15% Similarity=0.165 Sum_probs=111.3
Q ss_pred EccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhccccc
Q 004766 457 PSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALA 536 (732)
Q Consensus 457 ~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~ 536 (732)
.-.+| .+|..|-..|+.. ...++|+||..-| |+.++ ..|. ..+.+|+.+||.|+-+|.--+=|. .+ +.
T Consensus 8 ~~~~~-~~I~vwet~P~~~-~~~~~~tiliA~G-f~rrm-dh~a-gLA~YL~~NGFhViRyDsl~HvGl-----Ss--G~ 75 (294)
T PF02273_consen 8 RLEDG-RQIRVWETRPKNN-EPKRNNTILIAPG-FARRM-DHFA-GLAEYLSANGFHVIRYDSLNHVGL-----SS--GD 75 (294)
T ss_dssp EETTT-EEEEEEEE---TT-S---S-EEEEE-T-T-GGG-GGGH-HHHHHHHTTT--EEEE---B---------------
T ss_pred EcCCC-CEEEEeccCCCCC-CcccCCeEEEecc-hhHHH-HHHH-HHHHHHhhCCeEEEeccccccccC-----CC--CC
Confidence 34588 9999999999875 3467889998877 44432 2343 456667779999999886422110 01 11
Q ss_pred CCc----cHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCcccccccccCCCCC----
Q 004766 537 KKQ----NCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGH---- 608 (732)
Q Consensus 537 ~~~----~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~---- 608 (732)
..+ -..+|+..+++||...|. .++|++--|.-|-++...++. ++ ..-+|..+|++|+..+..-..+.
T Consensus 76 I~eftms~g~~sL~~V~dwl~~~g~---~~~GLIAaSLSaRIAy~Va~~-i~-lsfLitaVGVVnlr~TLe~al~~Dyl~ 150 (294)
T PF02273_consen 76 INEFTMSIGKASLLTVIDWLATRGI---RRIGLIAASLSARIAYEVAAD-IN-LSFLITAVGVVNLRDTLEKALGYDYLQ 150 (294)
T ss_dssp -----HHHHHHHHHHHHHHHHHTT------EEEEEETTHHHHHHHHTTT-S---SEEEEES--S-HHHHHHHHHSS-GGG
T ss_pred hhhcchHHhHHHHHHHHHHHHhcCC---CcchhhhhhhhHHHHHHHhhc-cC-cceEEEEeeeeeHHHHHHHHhccchhh
Confidence 111 124788999999998875 579999999999999999985 54 67778888999987553211111
Q ss_pred cccccc-------CCCCCHHHH--HHHH-hcCc----ccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHH
Q 004766 609 AWVSDF-------GCSEEEEEF--YWLI-KYSP----LHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLAT 674 (732)
Q Consensus 609 ~~~~~~-------g~p~~~~~~--~~~~-~~sp----~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~ 674 (732)
.+..+. |-.-+.+.| ++++ .+.+ ...++. ...|++..++.+|.-|...+..++...
T Consensus 151 ~~i~~lp~dldfeGh~l~~~vFv~dc~e~~w~~l~ST~~~~k~----------l~iP~iaF~A~~D~WV~q~eV~~~~~~ 220 (294)
T PF02273_consen 151 LPIEQLPEDLDFEGHNLGAEVFVTDCFEHGWDDLDSTINDMKR----------LSIPFIAFTANDDDWVKQSEVEELLDN 220 (294)
T ss_dssp S-GGG--SEEEETTEEEEHHHHHHHHHHTT-SSHHHHHHHHTT------------S-EEEEEETT-TTS-HHHHHHHHTT
T ss_pred cchhhCCCcccccccccchHHHHHHHHHcCCccchhHHHHHhh----------CCCCEEEEEeCCCccccHHHHHHHHHh
Confidence 111111 111111221 1111 1122 233444 578999999999999988877666655
Q ss_pred HHHhhcCCCCCCCCCCCEEEEEeCCCCCCCCCch
Q 004766 675 MQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPT 708 (732)
Q Consensus 675 l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~ 708 (732)
+. .....+...+|+.|-.+...
T Consensus 221 ~~------------s~~~klysl~Gs~HdL~enl 242 (294)
T PF02273_consen 221 IN------------SNKCKLYSLPGSSHDLGENL 242 (294)
T ss_dssp -T------------T--EEEEEETT-SS-TTSSH
T ss_pred cC------------CCceeEEEecCccchhhhCh
Confidence 43 33467888899999987543
|
Together with an acyl-protein synthetase (LuxE) and reductase (LuxC), they form a multienzyme complex. This complex channels activated fatty acids into the aldehyde substrate for the luciferase-catalyzed bacterial bioluminescence reaction [, ]. ; GO: 0016746 transferase activity, transferring acyl groups, 0006631 fatty acid metabolic process; PDB: 1THT_B. |
| >KOG1553 consensus Predicted alpha/beta hydrolase BAT5 [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.02 E-value=2.9e-05 Score=76.55 Aligned_cols=135 Identities=16% Similarity=0.141 Sum_probs=93.2
Q ss_pred EEEEEEccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHh
Q 004766 452 HQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHK 531 (732)
Q Consensus 452 ~~~~~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~ 531 (732)
.+.++.+.|| -+|-..++...........-+||..-|.-|.-..... ..-++ .||.|+-.|.+|-+|.-
T Consensus 215 ~R~kiks~dg-neiDtmF~d~r~n~~~ngq~LvIC~EGNAGFYEvG~m----~tP~~-lgYsvLGwNhPGFagST----- 283 (517)
T KOG1553|consen 215 QRLKIKSSDG-NEIDTMFLDGRPNQSGNGQDLVICFEGNAGFYEVGVM----NTPAQ-LGYSVLGWNHPGFAGST----- 283 (517)
T ss_pred eEEEEeecCC-cchhheeecCCCCCCCCCceEEEEecCCccceEeeee----cChHH-hCceeeccCCCCccccC-----
Confidence 5677888899 8998877765543322334466666664332111111 12244 89999999999965531
Q ss_pred cccccCCccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCcccccc
Q 004766 532 GGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLR 600 (732)
Q Consensus 532 ~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~ 600 (732)
.....+|+..-+.+++.+.+..=-..++.|.++|+|-||+.+++++..+|| .+|+|+.+-|-|++-
T Consensus 284 --G~P~p~n~~nA~DaVvQfAI~~Lgf~~edIilygWSIGGF~~~waAs~YPd-VkavvLDAtFDDllp 349 (517)
T KOG1553|consen 284 --GLPYPVNTLNAADAVVQFAIQVLGFRQEDIILYGWSIGGFPVAWAASNYPD-VKAVVLDATFDDLLP 349 (517)
T ss_pred --CCCCcccchHHHHHHHHHHHHHcCCCccceEEEEeecCCchHHHHhhcCCC-ceEEEeecchhhhhh
Confidence 122345566666777888776633467889999999999999999999997 699999999888753
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.0028 Score=60.84 Aligned_cols=191 Identities=18% Similarity=0.136 Sum_probs=104.2
Q ss_pred CCCEEEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCce-ecccccc--eeeeeEEEEeCCcEEEEEEecCCCCCCC
Q 004766 129 DGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIV-EADALSW--FKFSSIAWTHDSKGFFYSRYPAPKEGKD 205 (732)
Q Consensus 129 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~-~~~~~~~--~~~~~~~WspDg~~l~y~~~~~~~~~~~ 205 (732)
.++.++..++|||.|++||-.+ -..+.-||.-..++. ...++++ ...-.++||++|..|+..+.
T Consensus 59 ~hkrsVRsvAwsp~g~~La~aS-----FD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSR-------- 125 (312)
T KOG0645|consen 59 GHKRSVRSVAWSPHGRYLASAS-----FDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSR-------- 125 (312)
T ss_pred cchheeeeeeecCCCcEEEEee-----ccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeC--------
Confidence 4567899999999999998664 334666666555552 1122221 12468999999999998754
Q ss_pred CCCCCcccCCcccEEEEEECCCCCCCC-eEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcc
Q 004766 206 MDAGTETDSNLYHEFYYHFLGTKQSED-ILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLE 284 (732)
Q Consensus 206 ~~~~~~~~~~~~~~v~~~~lgt~~~~~-~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~ 284 (732)
...||.|.+..+..-+ .-|.++ +..-+-.+.|.|.-..|+-.+.+++ -++|.-+. +..
T Consensus 126 -----------DKSVWiWe~deddEfec~aVL~~--HtqDVK~V~WHPt~dlL~S~SYDnT---Ik~~~~~~-ddd---- 184 (312)
T KOG0645|consen 126 -----------DKSVWIWEIDEDDEFECIAVLQE--HTQDVKHVIWHPTEDLLFSCSYDNT---IKVYRDED-DDD---- 184 (312)
T ss_pred -----------CCeEEEEEecCCCcEEEEeeecc--ccccccEEEEcCCcceeEEeccCCe---EEEEeecC-CCC----
Confidence 3469999987443221 223332 2222336788888777765554432 33443222 211
Q ss_pred cccccCCCCCcEEee--eccc-ceEE-EEEecCCeEEEEeCCCCCCceEEE--EeCCCCCCceEeccCCCCCceeEEEEe
Q 004766 285 GFKKRDGLLPFVKLI--DGFD-AQYE-VIANDDTVFTFLTNKDAPKYKIIR--VDLKEPNDWFEVIPEAERDVLESATAV 358 (732)
Q Consensus 285 ~~~~~~~~~~~~~l~--~~~~-~~~~-~~s~dg~~l~~~s~~~~~~~~l~~--~d~~~~~~~~~l~~~~~~~~l~~~~~~ 358 (732)
|.... .+.. -.+. .|.+.|.+|.-.+++. ..+|++ .++... ....+..+.|.
T Consensus 185 ----------W~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~--tv~Iw~~~~~~~~~----------~sr~~Y~v~W~ 242 (312)
T KOG0645|consen 185 ----------WECVQTLDGHENTVWSLAFDNIGSRLVSCSDDG--TVSIWRLYTDLSGM----------HSRALYDVPWD 242 (312)
T ss_pred ----------eeEEEEecCccceEEEEEecCCCceEEEecCCc--ceEeeeeccCcchh----------cccceEeeeec
Confidence 32221 1211 1122 3677888887665543 456666 333221 12345556665
Q ss_pred cCCEEEEEEecCCeeEEEE
Q 004766 359 NLNQMIVSYLSDVKYVLQI 377 (732)
Q Consensus 359 ~~~~l~~~~~~~g~~~l~~ 377 (732)
+.++.+...++.-+|+.
T Consensus 243 --~~~IaS~ggD~~i~lf~ 259 (312)
T KOG0645|consen 243 --NGVIASGGGDDAIRLFK 259 (312)
T ss_pred --ccceEeccCCCEEEEEE
Confidence 34555555554333433
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.0026 Score=62.51 Aligned_cols=221 Identities=14% Similarity=0.121 Sum_probs=130.9
Q ss_pred EEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecccccc-eeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcc
Q 004766 134 LIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSW-FKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTET 212 (732)
Q Consensus 134 ~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~~~-~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~ 212 (732)
+.-..|--....+.+++. ..+ .+|+.+++.+.+.+.-..+. ..+.++.-+|-+..++-++.|
T Consensus 59 ~~~~~Fth~~~~~i~sSt-k~d--~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D-------------- 121 (311)
T KOG1446|consen 59 VDLACFTHHSNTVIHSST-KED--DTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLD-------------- 121 (311)
T ss_pred ccEEEEecCCceEEEccC-CCC--CceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccC--------------
Confidence 344555444455555543 222 58999999998866533222 235788889988877766543
Q ss_pred cCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCC
Q 004766 213 DSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGL 292 (732)
Q Consensus 213 ~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~ 292 (732)
..|++|++.+...+..+..... + -++++|.|-..++... . ..|.++|+..-. .
T Consensus 122 -----~tvrLWDlR~~~cqg~l~~~~~--p----i~AfDp~GLifA~~~~--~---~~IkLyD~Rs~d-----------k 174 (311)
T KOG1446|consen 122 -----KTVRLWDLRVKKCQGLLNLSGR--P----IAAFDPEGLIFALANG--S---ELIKLYDLRSFD-----------K 174 (311)
T ss_pred -----CeEEeeEecCCCCceEEecCCC--c----ceeECCCCcEEEEecC--C---CeEEEEEecccC-----------C
Confidence 3699999987655433332221 1 3688999987766542 2 257788876521 1
Q ss_pred CCcEEeee--cccceEE--EEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCC-ceeEEEEecCCEEEEEE
Q 004766 293 LPFVKLID--GFDAQYE--VIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERD-VLESATAVNLNQMIVSY 367 (732)
Q Consensus 293 ~~~~~l~~--~~~~~~~--~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~-~l~~~~~~~~~~l~~~~ 367 (732)
.|.....- +...++. -|||||+.+++.++. ..++.+|.=+|.....+..+.... .--+..+++++.+++..
T Consensus 175 gPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~----s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~g 250 (311)
T KOG1446|consen 175 GPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNA----SFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSG 250 (311)
T ss_pred CCceeEccCCCCccceeeeEEcCCCCEEEEEeCC----CcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEe
Confidence 12222211 2223333 489999999887764 247788876665222222222111 11345667878888888
Q ss_pred ecCCeeEEEEEeCCCCceeeecccc-cceeeEeecccC
Q 004766 368 LSDVKYVLQIRDLKNGSLLHQLPIE-IGSVNAISARRE 404 (732)
Q Consensus 368 ~~~g~~~l~~~d~~~g~~~~~l~~~-~g~v~~~~~s~d 404 (732)
..+| +|.+|++++|+.+..+..+ .+.+..+.++|-
T Consensus 251 s~dg--~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~ 286 (311)
T KOG1446|consen 251 SDDG--TIHVWNLETGKKVAVLRGPNGGPVSCVRFNPR 286 (311)
T ss_pred cCCC--cEEEEEcCCCcEeeEecCCCCCCccccccCCc
Confidence 8875 7889999999875555544 344444445543
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=97.99 E-value=7e-05 Score=76.98 Aligned_cols=224 Identities=11% Similarity=0.019 Sum_probs=125.6
Q ss_pred CEEEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCC
Q 004766 131 TAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGT 210 (732)
Q Consensus 131 ~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~ 210 (732)
...+..++||++|+.++-+ +-...|++||++||..+.-...+.-...+.+.||+.-++++-
T Consensus 258 ~k~Vrd~~~s~~g~~fLS~-----sfD~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G-------------- 318 (503)
T KOG0282|consen 258 RKPVRDASFNNCGTSFLSA-----SFDRFLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVG-------------- 318 (503)
T ss_pred hhhhhhhhccccCCeeeee-----ecceeeeeeccccceEEEEEecCCCceeeecCCCCCcEEEEe--------------
Confidence 3457789999999987643 334689999999999765333333346788999996666653
Q ss_pred cccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccC
Q 004766 211 ETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRD 290 (732)
Q Consensus 211 ~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~ 290 (732)
....+|..||+.++.. |-+-..+-+.+..+.|-++|++.+.++.+. .-.||-+...-
T Consensus 319 ----~sd~ki~~wDiRs~kv----vqeYd~hLg~i~~i~F~~~g~rFissSDdk---s~riWe~~~~v------------ 375 (503)
T KOG0282|consen 319 ----GSDKKIRQWDIRSGKV----VQEYDRHLGAILDITFVDEGRRFISSSDDK---SVRIWENRIPV------------ 375 (503)
T ss_pred ----cCCCcEEEEeccchHH----HHHHHhhhhheeeeEEccCCceEeeeccCc---cEEEEEcCCCc------------
Confidence 2334789999887642 211122233456788899999976555332 24444433221
Q ss_pred CCCCcEEeeeccc--ceEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCC--CceEec-cCCCCCceeEEEEecCCEEEE
Q 004766 291 GLLPFVKLIDGFD--AQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPN--DWFEVI-PEAERDVLESATAVNLNQMIV 365 (732)
Q Consensus 291 ~~~~~~~l~~~~~--~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~--~~~~l~-~~~~~~~l~~~~~~~~~~l~~ 365 (732)
+......... .......|++..+.-.+.. ..++.+.+...- +.+..+ .+.-...--.+.+++|+..++
T Consensus 376 ---~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~d----N~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~ 448 (503)
T KOG0282|consen 376 ---PIKNIADPEMHTMPCLTLHPNGKWFAAQSMD----NYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLC 448 (503)
T ss_pred ---cchhhcchhhccCcceecCCCCCeehhhccC----ceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEE
Confidence 1211111111 0111245666655543332 234444322110 011111 111011122467788788888
Q ss_pred EEecCCeeEEEEEeCCCCceeeecccccceeeEeecccCC
Q 004766 366 SYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARRED 405 (732)
Q Consensus 366 ~~~~~g~~~l~~~d~~~g~~~~~l~~~~g~v~~~~~s~d~ 405 (732)
+...+ +.++.||..+-+.+..+..+.+.+..+.+.|-.
T Consensus 449 SGdsd--G~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e 486 (503)
T KOG0282|consen 449 SGDSD--GKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVE 486 (503)
T ss_pred eecCC--ccEEEeechhhhhhhccccCCcceEEEEecCCC
Confidence 87766 478899988766666666665556566666544
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.002 Score=66.36 Aligned_cols=112 Identities=14% Similarity=0.070 Sum_probs=66.2
Q ss_pred EEeEEECCCCc-EEEEEEeccCCceEEEEEEECCC----Cce---e--------cccccceeeeeEEEEeCCcEEEEEEe
Q 004766 134 LIKVSVSEDAK-YLAYALSYSGSDWATIKLMRIED----QIV---E--------ADALSWFKFSSIAWTHDSKGFFYSRY 197 (732)
Q Consensus 134 ~~~~~~SPDG~-~la~~~~~~G~e~~~i~v~dl~~----g~~---~--------~~~~~~~~~~~~~WspDg~~l~y~~~ 197 (732)
+-...|.|--. .+|+. +.....+++++.- +.. + .....+-...+++|+.||..|++...
T Consensus 181 V~~~~WnP~~~~llasg-----~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~ 255 (524)
T KOG0273|consen 181 VFICAWNPLRDGLLASG-----SGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSE 255 (524)
T ss_pred eEEEecCchhhhhhhcc-----CCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeec
Confidence 34556888555 55543 3334566677652 110 1 11112223588999999999999865
Q ss_pred cCCCCCCCCCCCCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCC
Q 004766 198 PAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLS 277 (732)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~ 277 (732)
++ .+..|+....... .+ ..+.+-+.++.|+.+|.||+-..-++ .+.++|.-
T Consensus 256 ~G-------------------~~riw~~~G~l~~---tl--~~HkgPI~slKWnk~G~yilS~~vD~-----ttilwd~~ 306 (524)
T KOG0273|consen 256 DG-------------------EARIWNKDGNLIS---TL--GQHKGPIFSLKWNKKGTYILSGGVDG-----TTILWDAH 306 (524)
T ss_pred Cc-------------------EEEEEecCchhhh---hh--hccCCceEEEEEcCCCCEEEeccCCc-----cEEEEecc
Confidence 43 4667776554321 22 12334467899999999997654433 35677876
Q ss_pred CC
Q 004766 278 AL 279 (732)
Q Consensus 278 ~~ 279 (732)
++
T Consensus 307 ~g 308 (524)
T KOG0273|consen 307 TG 308 (524)
T ss_pred Cc
Confidence 54
|
|
| >PF03959 FSH1: Serine hydrolase (FSH1); InterPro: IPR005645 This entry represents proteins belonging to the AB hydrolase family | Back alignment and domain information |
|---|
Probab=97.96 E-value=4.8e-05 Score=74.25 Aligned_cols=168 Identities=18% Similarity=0.086 Sum_probs=79.5
Q ss_pred CccEEEEEcCCCCccCCCCcCh---hHHHHHHhcCcEEEEEcccC-----C--C-------------CCchhHHhccccc
Q 004766 480 SHPCLLYGYGGFNISVTPSFSV---SRTILMRHLGAVFCIANIRG-----G--G-------------EYGEEWHKGGALA 536 (732)
Q Consensus 480 ~~P~vv~~hG~~~~~~~~~~~~---~~~~~l~~~G~~v~~~~~rG-----~--g-------------~~g~~~~~~~~~~ 536 (732)
+.+-||.+||...+. ..|.. .+...|.+.++-++.+|-+- . . +-...|......
T Consensus 3 ~k~riLcLHG~~~na--~if~~q~~~l~~~l~~~~~ef~f~dgP~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~- 79 (212)
T PF03959_consen 3 RKPRILCLHGYGQNA--EIFRQQTSALRKALKKLDFEFVFVDGPHEVPPGPGIEPFSSEAESAFGDPGPFYSWWDPDDD- 79 (212)
T ss_dssp ---EEEEE--TT--H--HHHHHHTHHHHHHHHHTT-EEEEE--SEE---GGG-SS---HHHHHHHHTT--EESS---S--
T ss_pred CCceEEEeCCCCcCH--HHHHHHHHHHHHHHhhCcEEEEEecCCcccCCcccccccccccccccCCCCcceeeeecCCC-
Confidence 457899999976543 23332 23455562388888888641 1 1 112234433221
Q ss_pred CCccHHHHHHHHHHHHH----HcCCCCCCcEEEEecChhHHHHHHHHhh----C----CCeeeEEEEcCCcccccccccC
Q 004766 537 KKQNCFDDFISASEYLI----SAGYTQSRKLCIEGGSNGGLLVGACINQ----R----PDLFGCALAHVGVMDMLRYHKF 604 (732)
Q Consensus 537 ~~~~~~~D~~~~~~~l~----~~~~~d~~~i~i~G~S~GG~l~~~~~~~----~----p~~f~a~v~~~p~~d~~~~~~~ 604 (732)
.....++..++++|. ++|- =.||+|+|.||.+++.++.+ . .-.|+.+|+.+++.-....
T Consensus 80 --~~~~~~~~~sl~~l~~~i~~~GP----fdGvlGFSQGA~lAa~ll~~~~~~~~~~~~~~~kf~V~~sg~~p~~~~--- 150 (212)
T PF03959_consen 80 --DHEYEGLDESLDYLRDYIEENGP----FDGVLGFSQGAALAALLLALQQRGRPDGAHPPFKFAVFISGFPPPDPD--- 150 (212)
T ss_dssp --SGGG---HHHHHHHHHHHHHH-------SEEEEETHHHHHHHHHHHHHHHHST--T----SEEEEES----EEE----
T ss_pred --cccccCHHHHHHHHHHHHHhcCC----eEEEEeecHHHHHHHHHHHHHHhhcccccCCCceEEEEEcccCCCchh---
Confidence 223444555555443 3443 36999999999999888763 1 1257888877775421100
Q ss_pred CCCCccccccCCCCCHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhcCCCC
Q 004766 605 TIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLE 684 (732)
Q Consensus 605 ~~~~~~~~~~g~p~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~ 684 (732)
+.+.. ... .+..|+|-++|.+|..+++..+.++++....
T Consensus 151 ------------------------~~~~~-~~~---------~i~iPtlHv~G~~D~~~~~~~s~~L~~~~~~------- 189 (212)
T PF03959_consen 151 ------------------------YQELY-DEP---------KISIPTLHVIGENDPVVPPERSEALAEMFDP------- 189 (212)
T ss_dssp ------------------------GTTTT---T---------T---EEEEEEETT-SSS-HHHHHHHHHHHHH-------
T ss_pred ------------------------hhhhh-ccc---------cCCCCeEEEEeCCCCCcchHHHHHHHHhccC-------
Confidence 11111 111 3788999999999999999999999888774
Q ss_pred CCCCCCCEEEEEeCCCCCCCCCc
Q 004766 685 NSPQTNPIIGRIERKAGHGVGLP 707 (732)
Q Consensus 685 ~~~~~~~~~~~~~~~~gH~~~~~ 707 (732)
. ..++.. ++||.+-..
T Consensus 190 ----~--~~v~~h-~gGH~vP~~ 205 (212)
T PF03959_consen 190 ----D--ARVIEH-DGGHHVPRK 205 (212)
T ss_dssp ----H--EEEEEE-SSSSS----
T ss_pred ----C--cEEEEE-CCCCcCcCC
Confidence 1 355555 679987543
|
It consists of serine hydrolases of unknown specificity [, ] and includes uncharacterised proteins.; PDB: 1YCD_A. |
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.0064 Score=56.60 Aligned_cols=206 Identities=15% Similarity=0.154 Sum_probs=108.4
Q ss_pred CCEEEEeEEECCCCcEEEEEEeccCCceEEEEEEECC--C----CceecccccceeeeeEEEEeCC---cEEEEEEecCC
Q 004766 130 GTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIE--D----QIVEADALSWFKFSSIAWTHDS---KGFFYSRYPAP 200 (732)
Q Consensus 130 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~--~----g~~~~~~~~~~~~~~~~WspDg---~~l~y~~~~~~ 200 (732)
+..++.-..|||+|++|| .|+...+|.++... | |..+...........++|..|. ..|+.+.
T Consensus 88 hkgsiyc~~ws~~gelia-----tgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~---- 158 (350)
T KOG0641|consen 88 HKGSIYCTAWSPCGELIA-----TGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASA---- 158 (350)
T ss_pred cCccEEEEEecCccCeEE-----ecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEec----
Confidence 456788899999999999 44555678877654 2 2222222222223455554331 2233221
Q ss_pred CCCCCCCCCCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEE-eEEecCCcEEEEEEecCCcceEEEEEEeCCCC
Q 004766 201 KEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFS-GHVTEDGQYLVMCIEENCDPVNKVYYCDLSAL 279 (732)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~-~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~ 279 (732)
.....+||.-+-++++.-. .+.+ +.+.+.. ..| +|-.++-. .. ...|..+|+.-.
T Consensus 159 -------------gagdc~iy~tdc~~g~~~~--a~sg--htghilalysw--n~~m~~sg--sq---dktirfwdlrv~ 214 (350)
T KOG0641|consen 159 -------------GAGDCKIYITDCGRGQGFH--ALSG--HTGHILALYSW--NGAMFASG--SQ---DKTIRFWDLRVN 214 (350)
T ss_pred -------------CCCcceEEEeecCCCCcce--eecC--CcccEEEEEEe--cCcEEEcc--CC---CceEEEEeeecc
Confidence 2345688988888765321 1211 1122221 223 33332211 11 233556665431
Q ss_pred CCCcccccccCCCCCcEEeeeccc-----ce-E--EEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCc
Q 004766 280 PEGLEGFKKRDGLLPFVKLIDGFD-----AQ-Y--EVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDV 351 (732)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~l~~~~~-----~~-~--~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~ 351 (732)
.++..+-..+. .. + ..+.|.|+.|. ... ....-+.+|+.++..++...|+. ..
T Consensus 215 -------------~~v~~l~~~~~~~glessavaav~vdpsgrll~-sg~---~dssc~lydirg~r~iq~f~phs--ad 275 (350)
T KOG0641|consen 215 -------------SCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLA-SGH---ADSSCMLYDIRGGRMIQRFHPHS--AD 275 (350)
T ss_pred -------------ceeeeccCcccCCCcccceeEEEEECCCcceee-ecc---CCCceEEEEeeCCceeeeeCCCc--cc
Confidence 11111211110 01 1 13567665443 222 23457788988887677788887 56
Q ss_pred eeEEEEecCCEEEEEEecCCeeEEEEEeCCCCceeeecc
Q 004766 352 LESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLP 390 (732)
Q Consensus 352 l~~~~~~~~~~l~~~~~~~g~~~l~~~d~~~g~~~~~l~ 390 (732)
+..+.++++-+.+++.+-+ ..|.+-|++ |....+|+
T Consensus 276 ir~vrfsp~a~yllt~syd--~~ikltdlq-gdla~el~ 311 (350)
T KOG0641|consen 276 IRCVRFSPGAHYLLTCSYD--MKIKLTDLQ-GDLAHELP 311 (350)
T ss_pred eeEEEeCCCceEEEEeccc--ceEEEeecc-cchhhcCc
Confidence 8889999865555666555 578888887 65544443
|
|
| >PF05677 DUF818: Chlamydia CHLPS protein (DUF818); InterPro: IPR008536 This family of unknown function includes several Chlamydia CHLPS proteins and Legionella SidB proteins | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00013 Score=73.15 Aligned_cols=121 Identities=18% Similarity=0.247 Sum_probs=85.2
Q ss_pred eEEEEEEEccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCC----CCcChhHHHHHHhcCcEEEEEcccCCCCC
Q 004766 450 HVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVT----PSFSVSRTILMRHLGAVFCIANIRGGGEY 525 (732)
Q Consensus 450 ~~~~~~~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~----~~~~~~~~~~l~~~G~~v~~~~~rG~g~~ 525 (732)
.++++.+.. |+ +.|-+..+.-++. ++.-.||+.-|-.+.-.. ......+..+..+.|..|+++||||-|..
T Consensus 111 ~~kRv~Iq~-D~-~~IDt~~I~~~~a---~~~RWiL~s~GNg~~~E~~~~~~~~~~~~~~~ak~~~aNvl~fNYpGVg~S 185 (365)
T PF05677_consen 111 SVKRVPIQY-DG-VKIDTMAIHQPEA---KPQRWILVSNGNGECYENRAMLDYKDDWIQRFAKELGANVLVFNYPGVGSS 185 (365)
T ss_pred ceeeEEEee-CC-EEEEEEEeeCCCC---CCCcEEEEEcCChHHhhhhhhhccccHHHHHHHHHcCCcEEEECCCccccC
Confidence 567777776 89 9999887764433 345567776664322111 12234567777879999999999997632
Q ss_pred chhHHhcccccCCccHHHHHHHHHHHHHHcC-CCCCCcEEEEecChhHHHHHHHHhhC
Q 004766 526 GEEWHKGGALAKKQNCFDDFISASEYLISAG-YTQSRKLCIEGGSNGGLLVGACINQR 582 (732)
Q Consensus 526 g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~-~~d~~~i~i~G~S~GG~l~~~~~~~~ 582 (732)
.|.. ....-..|..++++||.++. -+.+++|.+.|+|.||.+++.++.++
T Consensus 186 ------~G~~-s~~dLv~~~~a~v~yL~d~~~G~ka~~Ii~yG~SLGG~Vqa~AL~~~ 236 (365)
T PF05677_consen 186 ------TGPP-SRKDLVKDYQACVRYLRDEEQGPKAKNIILYGHSLGGGVQAEALKKE 236 (365)
T ss_pred ------CCCC-CHHHHHHHHHHHHHHHHhcccCCChheEEEeeccccHHHHHHHHHhc
Confidence 2222 23445789999999999753 35789999999999999988877653
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00077 Score=64.43 Aligned_cols=205 Identities=12% Similarity=0.011 Sum_probs=122.1
Q ss_pred EEEEeEEECCCCcEEEEEEeccCCceEEEEEEECCC-------Cce-ecccccceeeeeEEEEeCCcEEEEEEecCCCCC
Q 004766 132 AALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIED-------QIV-EADALSWFKFSSIAWTHDSKGFFYSRYPAPKEG 203 (732)
Q Consensus 132 ~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~-------g~~-~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~ 203 (732)
..+..+.||++|++++++.+..=.....|.++|+.. .++ +.......+.....|+|-++.|++...+
T Consensus 94 ~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~----- 168 (327)
T KOG0643|consen 94 SPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHED----- 168 (327)
T ss_pred CeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCC-----
Confidence 346778899999999999987655567899999873 231 2221222245778999999999987433
Q ss_pred CCCCCCCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCc
Q 004766 204 KDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGL 283 (732)
Q Consensus 204 ~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~ 283 (732)
..|-.|++.++.. ++-....+..-+.++.+|||..+.+-.+.+. + -.++|..+..
T Consensus 169 --------------G~is~~da~~g~~---~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dt---t--akl~D~~tl~--- 223 (327)
T KOG0643|consen 169 --------------GSISIYDARTGKE---LVDSDEEHSSKINDLQFSRDRTYFITGSKDT---T--AKLVDVRTLE--- 223 (327)
T ss_pred --------------CcEEEEEcccCce---eeechhhhccccccccccCCcceEEecccCc---c--ceeeecccee---
Confidence 3577788776532 3322233334556889999999875444322 2 3455665521
Q ss_pred ccccccCCCCCcEEeeecccceEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCC------------CceEeccCCCCCc
Q 004766 284 EGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPN------------DWFEVIPEAERDV 351 (732)
Q Consensus 284 ~~~~~~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~------------~~~~l~~~~~~~~ 351 (732)
..+............++|--+++++....++ ..+-......++ ++-.+-.|- ..
T Consensus 224 ----------v~Kty~te~PvN~aaisP~~d~VilgGGqeA--~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHF--GP 289 (327)
T KOG0643|consen 224 ----------VLKTYTTERPVNTAAISPLLDHVILGGGQEA--MDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHF--GP 289 (327)
T ss_pred ----------eEEEeeecccccceecccccceEEecCCcee--eeeeeecccccchhhhHHHHHHHHHhccccccc--cC
Confidence 0122222222223357786666665433322 123333322232 112222222 46
Q ss_pred eeEEEEecCCEEEEEEecCCeeEEEEEeC
Q 004766 352 LESATAVNLNQMIVSYLSDVKYVLQIRDL 380 (732)
Q Consensus 352 l~~~~~~~~~~l~~~~~~~g~~~l~~~d~ 380 (732)
|..+++.+++..|.+..++|.-+|..+|.
T Consensus 290 INsvAfhPdGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 290 INSVAFHPDGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred cceeEECCCCcccccCCCCceEEEEEecc
Confidence 78899999889999999998878777764
|
|
| >PF11144 DUF2920: Protein of unknown function (DUF2920); InterPro: IPR022605 This bacterial family of proteins has no known function | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00043 Score=71.74 Aligned_cols=149 Identities=15% Similarity=0.126 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHHcCCCC--CCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCccccc-ccc-----c---------C-
Q 004766 543 DDFISASEYLISAGYTQ--SRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDML-RYH-----K---------F- 604 (732)
Q Consensus 543 ~D~~~~~~~l~~~~~~d--~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~-~~~-----~---------~- 604 (732)
-|.+.|+.+|+++-..- .-++...|+|+||||+..++--+|.+|.+++-.++.+-.. ++. . +
T Consensus 164 iD~INAl~~l~k~~~~~~~~lp~I~~G~s~G~yla~l~~k~aP~~~~~~iDns~~~~p~l~~I~Gre~~~~~y~~~~~~~ 243 (403)
T PF11144_consen 164 IDIINALLDLKKIFPKNGGGLPKIYIGSSHGGYLAHLCAKIAPWLFDGVIDNSSYALPPLRYIFGREIDFMKYICSGEFF 243 (403)
T ss_pred HHHHHHHHHHHHhhhcccCCCcEEEEecCcHHHHHHHHHhhCccceeEEEecCccccchhheeeeeecCccccccccccc
Confidence 57778888888762222 2389999999999999999999999999998776644321 110 0 0
Q ss_pred ---------CCCCccccccCCC--CCHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHH
Q 004766 605 ---------TIGHAWVSDFGCS--EEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLA 673 (732)
Q Consensus 605 ---------~~~~~~~~~~g~p--~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~ 673 (732)
.....|+.-.++| -.++.+ .++..--..++.-. +.. ..+|-....|+..|+.+|+.+-.+++.
T Consensus 244 ~~~~~~i~~~~Kt~Wt~n~~S~~~Fs~~~~-~IR~iLn~~HL~iq---s~~--n~~~~yvsYHs~~D~~~p~~~K~~l~~ 317 (403)
T PF11144_consen 244 NFKNIRIYCFDKTFWTRNKNSPYYFSKARY-IIRSILNPDHLKIQ---SNY--NKKIIYVSYHSIKDDLAPAEDKEELYE 317 (403)
T ss_pred ccCCEEEEEEeccccccCCCCccccChHHH-HHHHhcChHHHHHH---Hhc--ccceEEEEEeccCCCCCCHHHHHHHHH
Confidence 0011243333333 122211 12222111111100 000 034667788999999999999999999
Q ss_pred HHHHhhcCCCCCCCCCCCEEEEEeCC-----------CCCCCCCc
Q 004766 674 TMQYVLCTSLENSPQTNPIIGRIERK-----------AGHGVGLP 707 (732)
Q Consensus 674 ~l~~~~~~~~~~~~~~~~~~~~~~~~-----------~gH~~~~~ 707 (732)
.|+++ |-+++++...+ -.||++-+
T Consensus 318 ~l~~l----------gfda~l~lIkdes~iDGkfIKnl~HGmgis 352 (403)
T PF11144_consen 318 ILKNL----------GFDATLHLIKDESEIDGKFIKNLEHGMGIS 352 (403)
T ss_pred HHHHc----------CCCeEEEEecChhhccchheeccccCCCCC
Confidence 99998 88888887733 47887654
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00027 Score=79.79 Aligned_cols=105 Identities=11% Similarity=0.034 Sum_probs=66.7
Q ss_pred EEEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecccccc-eeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCC
Q 004766 132 AALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSW-FKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGT 210 (732)
Q Consensus 132 ~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~~~-~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~ 210 (732)
-.+..+.||||++++|-. +-...|.||+..+.+.+...... ..+-+++|.|=|++|+-.++|.
T Consensus 130 ~DV~Dv~Wsp~~~~lvS~-----s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDr----------- 193 (942)
T KOG0973|consen 130 SDVLDVNWSPDDSLLVSV-----SLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDR----------- 193 (942)
T ss_pred CccceeccCCCccEEEEe-----cccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCc-----------
Confidence 446789999999998854 23368999999988654322211 1246899999999998776443
Q ss_pred cccCCcccEEEEEECCCCCCCCe--EEEecCCCCeeEEEeEEecCCcEEEEE
Q 004766 211 ETDSNLYHEFYYHFLGTKQSEDI--LCWKDPEHPKYIFSGHVTEDGQYLVMC 260 (732)
Q Consensus 211 ~~~~~~~~~v~~~~lgt~~~~~~--~v~~~~~~~~~~~~~~~SpDg~~l~~~ 260 (732)
.|.+|+..+=+.+.. -.|++.....++..++|||||++|+..
T Consensus 194 --------tikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~ 237 (942)
T KOG0973|consen 194 --------TLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASP 237 (942)
T ss_pred --------eEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecch
Confidence 455565433111110 012211223466789999999999754
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.0034 Score=66.01 Aligned_cols=229 Identities=11% Similarity=0.067 Sum_probs=122.6
Q ss_pred ceEEEEEEECCCCceecccc----cceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCCcccEEEEEECCCCCCC
Q 004766 156 DWATIKLMRIEDQIVEADAL----SWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSE 231 (732)
Q Consensus 156 e~~~i~v~dl~~g~~~~~~~----~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~ 231 (732)
|..+|.|||+.||....... .-....-+.||.|+|+++-...+ .|-.+.-.+
T Consensus 280 e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~--------------------sisIyEtps---- 335 (698)
T KOG2314|consen 280 EGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN--------------------SISIYETPS---- 335 (698)
T ss_pred CCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccc--------------------eEEEEecCc----
Confidence 44689999999998542110 11123568999999977754321 122222110
Q ss_pred CeEEEecC-CCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCCCCcEEeeecccceEEEEE
Q 004766 232 DILCWKDP-EHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIA 310 (732)
Q Consensus 232 ~~~v~~~~-~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s 310 (732)
..+++.. -....+-++.|||-+..|++.+........++-++.+.++. ....+.|..-.+.. ..|.
T Consensus 336 -f~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~-----------~iRt~nlfnVsDck-LhWQ 402 (698)
T KOG2314|consen 336 -FMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKR-----------EIRTKNLFNVSDCK-LHWQ 402 (698)
T ss_pred -eeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccc-----------eeeeccceeeeccE-EEec
Confidence 1122111 01122346889999999999875544334556666655421 00111222211221 2488
Q ss_pred ecCCeEEEEeCCCC--------CCceEEEEeCCCCCCceEeccCCCCCceeEEEEec-CCEEEEEEecCCeeEEEEEeCC
Q 004766 311 NDDTVFTFLTNKDA--------PKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVN-LNQMIVSYLSDVKYVLQIRDLK 381 (732)
Q Consensus 311 ~dg~~l~~~s~~~~--------~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~-~~~l~~~~~~~g~~~l~~~d~~ 381 (732)
.+|+.|.|-.++.. .+..|++++-+ .-....++-. ..+-.|.|-+ ++++.+.........+..|-.+
T Consensus 403 k~gdyLcvkvdR~tK~~~~g~f~n~eIfrireK--dIpve~velk--e~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e 478 (698)
T KOG2314|consen 403 KSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREK--DIPVEVVELK--ESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVE 478 (698)
T ss_pred cCCcEEEEEEEeeccccccceEeeEEEEEeecc--CCCceeeecc--hheeeeeeccCCCeEEEEEccccccceeEEEee
Confidence 88999999877521 13455555422 2123334333 4456788886 4666666665555666666554
Q ss_pred -CCceeeec-ccccceeeEeecccCCcEEEEEE-ecCCCCceEEEEECC
Q 004766 382 -NGSLLHQL-PIEIGSVNAISARREDSVVFISF-TSFLIPGIVYQCNLK 427 (732)
Q Consensus 382 -~g~~~~~l-~~~~g~v~~~~~s~d~~~l~~~~-ss~~~p~~~y~~d~~ 427 (732)
++.....+ .++.-....+.++|.|.-+++.. .| .-+.++-||+.
T Consensus 479 ~~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s--~~g~l~F~D~~ 525 (698)
T KOG2314|consen 479 TNIKKPSLVKELDKKFANTVFWSPKGRFVVVAALVS--RRGDLEFYDTD 525 (698)
T ss_pred cCCCchhhhhhhcccccceEEEcCCCcEEEEEEecc--cccceEEEecc
Confidence 23221222 23444455677889887554432 22 45677777765
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00031 Score=72.33 Aligned_cols=240 Identities=12% Similarity=0.043 Sum_probs=135.3
Q ss_pred CCEEEEeEEECC-CCcEEEEEEeccCCceEEEEEEECCC-Cceecccccce-eeeeEEEEeCCcEEEEEEecCCCCCCCC
Q 004766 130 GTAALIKVSVSE-DAKYLAYALSYSGSDWATIKLMRIED-QIVEADALSWF-KFSSIAWTHDSKGFFYSRYPAPKEGKDM 206 (732)
Q Consensus 130 ~~~~~~~~~~SP-DG~~la~~~~~~G~e~~~i~v~dl~~-g~~~~~~~~~~-~~~~~~WspDg~~l~y~~~~~~~~~~~~ 206 (732)
+.-.++.+.|.| .|.+|+ +. | -...|+||++-+ +..+..-.+.. .+..+.|+++|+.|+-++++
T Consensus 213 H~kgvsai~~fp~~~hLlL-S~---g-mD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD-------- 279 (503)
T KOG0282|consen 213 HTKGVSAIQWFPKKGHLLL-SG---G-MDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFD-------- 279 (503)
T ss_pred CccccchhhhccceeeEEE-ec---C-CCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecc--------
Confidence 345678889999 555444 32 2 236899999876 55554333222 24689999999999987654
Q ss_pred CCCCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccc
Q 004766 207 DAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGF 286 (732)
Q Consensus 207 ~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~ 286 (732)
..|.+||..|++.. .-|+... ...-+.+-||+..++++... ..+|..+|..+++
T Consensus 280 -----------~~lKlwDtETG~~~--~~f~~~~---~~~cvkf~pd~~n~fl~G~s----d~ki~~wDiRs~k------ 333 (503)
T KOG0282|consen 280 -----------RFLKLWDTETGQVL--SRFHLDK---VPTCVKFHPDNQNIFLVGGS----DKKIRQWDIRSGK------ 333 (503)
T ss_pred -----------eeeeeeccccceEE--EEEecCC---CceeeecCCCCCcEEEEecC----CCcEEEEeccchH------
Confidence 36889999887532 2233221 22457788999887776532 3568888987743
Q ss_pred cccCCCCCcEEeeecccce---E--EEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecCC
Q 004766 287 KKRDGLLPFVKLIDGFDAQ---Y--EVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLN 361 (732)
Q Consensus 287 ~~~~~~~~~~~l~~~~~~~---~--~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~ 361 (732)
++..++.. + ..|-++|++++-.++.. ..++|.+ ..+..++. +..........+...+.+
T Consensus 334 -----------vvqeYd~hLg~i~~i~F~~~g~rFissSDdk--s~riWe~--~~~v~ik~-i~~~~~hsmP~~~~~P~~ 397 (503)
T KOG0282|consen 334 -----------VVQEYDRHLGAILDITFVDEGRRFISSSDDK--SVRIWEN--RIPVPIKN-IADPEMHTMPCLTLHPNG 397 (503)
T ss_pred -----------HHHHHHhhhhheeeeEEccCCceEeeeccCc--cEEEEEc--CCCccchh-hcchhhccCcceecCCCC
Confidence 22222211 1 13567788776544432 4445444 33332222 222223445566666644
Q ss_pred EEEEEEecCCeeEEEEEeCCCC--c-eeeecccc--cceeeEeecccCCcEEEEEEecCCCCceEEEEECCCCC
Q 004766 362 QMIVSYLSDVKYVLQIRDLKNG--S-LLHQLPIE--IGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 430 (732)
Q Consensus 362 ~l~~~~~~~g~~~l~~~d~~~g--~-~~~~l~~~--~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~~ 430 (732)
..++...-+ ..|+++....- . ..++.... .|..-.+.+||||.+|. |-..-+.++.||..+-+
T Consensus 398 ~~~~aQs~d--N~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~----SGdsdG~v~~wdwkt~k 465 (503)
T KOG0282|consen 398 KWFAAQSMD--NYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLC----SGDSDGKVNFWDWKTTK 465 (503)
T ss_pred CeehhhccC--ceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEE----eecCCccEEEeechhhh
Confidence 454444444 35666553210 0 00122222 23333677899998664 23445789999977654
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00068 Score=71.67 Aligned_cols=222 Identities=17% Similarity=0.118 Sum_probs=123.7
Q ss_pred CCEEEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecccccceeeeeEEEEeCCcE-EEEEEecCCC--CCCCC
Q 004766 130 GTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWFKFSSIAWTHDSKG-FFYSRYPAPK--EGKDM 206 (732)
Q Consensus 130 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~~~~~~~~~~WspDg~~-l~y~~~~~~~--~~~~~ 206 (732)
+.-.+..++..|.|.+|| .|++..+++||.+.||..+....-...+..++|.|.++. |+.++..... ....+
T Consensus 399 Htg~Vr~iSvdp~G~wla-----sGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~ 473 (733)
T KOG0650|consen 399 HTGLVRSISVDPSGEWLA-----SGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIF 473 (733)
T ss_pred cCCeEEEEEecCCcceee-----ecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceEEeCccc
Confidence 344577899999999998 566778999999999996643322223588999998863 3333322110 00111
Q ss_pred CCC----C----c----ccCCcccEEEEEECCCCC--CCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEE
Q 004766 207 DAG----T----E----TDSNLYHEFYYHFLGTKQ--SEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVY 272 (732)
Q Consensus 207 ~~~----~----~----~~~~~~~~v~~~~lgt~~--~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~ 272 (732)
++. . . .+...+.++..|..+... ...+++.-. .+.-+.++.|..+|.||+.+...+. +..++
T Consensus 474 G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~--~~k~i~~vtWHrkGDYlatV~~~~~--~~~Vl 549 (733)
T KOG0650|consen 474 GDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIK--HPKSIRQVTWHRKGDYLATVMPDSG--NKSVL 549 (733)
T ss_pred cchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEe--cCCccceeeeecCCceEEEeccCCC--cceEE
Confidence 100 0 0 112223345556554221 112222211 1223458899999999988876554 56788
Q ss_pred EEeCCCCCCCcccccccCCCCCcEEeeecccceEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCce
Q 004766 273 YCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVL 352 (732)
Q Consensus 273 ~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l 352 (732)
+-.+..... ..+++.. .+ ......|.|....|++.|. ..|..+|+....-.+.|.+.. ..|
T Consensus 550 iHQLSK~~s----------Q~PF~ks-kG-~vq~v~FHPs~p~lfVaTq-----~~vRiYdL~kqelvKkL~tg~--kwi 610 (733)
T KOG0650|consen 550 IHQLSKRKS----------QSPFRKS-KG-LVQRVKFHPSKPYLFVATQ-----RSVRIYDLSKQELVKKLLTGS--KWI 610 (733)
T ss_pred EEecccccc----------cCchhhc-CC-ceeEEEecCCCceEEEEec-----cceEEEehhHHHHHHHHhcCC--eee
Confidence 888775321 1122111 11 1112236665555555433 246677876654334555544 568
Q ss_pred eEEEEec-CCEEEEEEecCCeeEEEEEeCCC
Q 004766 353 ESATAVN-LNQMIVSYLSDVKYVLQIRDLKN 382 (732)
Q Consensus 353 ~~~~~~~-~~~l~~~~~~~g~~~l~~~d~~~ 382 (732)
..+++.+ ++.|++..... ++..+|++-
T Consensus 611 S~msihp~GDnli~gs~d~---k~~WfDldl 638 (733)
T KOG0650|consen 611 SSMSIHPNGDNLILGSYDK---KMCWFDLDL 638 (733)
T ss_pred eeeeecCCCCeEEEecCCC---eeEEEEccc
Confidence 8888886 46677665443 688888863
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.0013 Score=67.69 Aligned_cols=218 Identities=11% Similarity=0.106 Sum_probs=121.1
Q ss_pred EEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceeccc-ccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcc
Q 004766 134 LIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADA-LSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTET 212 (732)
Q Consensus 134 ~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~-~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~ 212 (732)
+..+.-+|+|.+|+-. ....+||+|.+.+|..+..- ..-...+.+.||.||+.|+-...|.
T Consensus 84 v~al~s~n~G~~l~ag-----~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg------------- 145 (476)
T KOG0646|consen 84 VHALASSNLGYFLLAG-----TISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDG------------- 145 (476)
T ss_pred eeeeecCCCceEEEee-----cccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCc-------------
Confidence 5577789999988733 34568999999999976422 1111347789999998877655433
Q ss_pred cCCcccEEEEEECCCC-------CCCCeEEEecCCCCeeEEEeEEecCC--cEEEEEEecCCcceEEEEEEeCCCCCCCc
Q 004766 213 DSNLYHEFYYHFLGTK-------QSEDILCWKDPEHPKYIFSGHVTEDG--QYLVMCIEENCDPVNKVYYCDLSALPEGL 283 (732)
Q Consensus 213 ~~~~~~~v~~~~lgt~-------~~~~~~v~~~~~~~~~~~~~~~SpDg--~~l~~~~~~~~~~~~~l~~~d~~~~~~~~ 283 (732)
.|..|.+-+- .......|. ++..-+.++..++.| .+|+-.+.+ .-+.++|+..+.
T Consensus 146 ------~V~vW~l~~lv~a~~~~~~~p~~~f~--~HtlsITDl~ig~Gg~~~rl~TaS~D-----~t~k~wdlS~g~--- 209 (476)
T KOG0646|consen 146 ------AVLVWLLTDLVSADNDHSVKPLHIFS--DHTLSITDLQIGSGGTNARLYTASED-----RTIKLWDLSLGV--- 209 (476)
T ss_pred ------cEEEEEEEeecccccCCCccceeeec--cCcceeEEEEecCCCccceEEEecCC-----ceEEEEEeccce---
Confidence 3555543211 111122222 222233445555443 223222222 336667777642
Q ss_pred ccccccCCCCCcEEeeecccceEEEEEecCCeEEEEeCCCCCCceEEEEeCCC----------------CCCceEeccCC
Q 004766 284 EGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKE----------------PNDWFEVIPEA 347 (732)
Q Consensus 284 ~~~~~~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~----------------~~~~~~l~~~~ 347 (732)
-+...+.+........+|-+.++|+ .+.+ +.++..++.+ +.....++.+.
T Consensus 210 ----------LLlti~fp~si~av~lDpae~~~yi-Gt~~---G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~ 275 (476)
T KOG0646|consen 210 ----------LLLTITFPSSIKAVALDPAERVVYI-GTEE---GKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHE 275 (476)
T ss_pred ----------eeEEEecCCcceeEEEcccccEEEe-cCCc---ceEEeeehhcCCcccccccccccccccceeeeecccc
Confidence 0222222221122246675555554 3332 3444444311 11345566666
Q ss_pred CCCceeEEEEecCCEEEEEEecCCeeEEEEEeCCCCceeeecccccceeeEeec
Q 004766 348 ERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISA 401 (732)
Q Consensus 348 ~~~~l~~~~~~~~~~l~~~~~~~g~~~l~~~d~~~g~~~~~l~~~~g~v~~~~~ 401 (732)
.+..|..++++-|+.++++...+| ++.+||..+.+.++.+..-.|.|..+..
T Consensus 276 ~~~~ITcLais~DgtlLlSGd~dg--~VcvWdi~S~Q~iRtl~~~kgpVtnL~i 327 (476)
T KOG0646|consen 276 NESAITCLAISTDGTLLLSGDEDG--KVCVWDIYSKQCIRTLQTSKGPVTNLQI 327 (476)
T ss_pred CCcceeEEEEecCccEEEeeCCCC--CEEEEecchHHHHHHHhhhccccceeEe
Confidence 445788888887788999998885 7899999866666666533455544443
|
|
| >KOG1516 consensus Carboxylesterase and related proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.89 E-value=1.8e-05 Score=89.52 Aligned_cols=128 Identities=19% Similarity=0.177 Sum_probs=84.5
Q ss_pred EEEEEEEcCCCCCCCCccEEEEEcCCCCc-cCCCCcCh-hHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccC-CccH
Q 004766 465 IPMFIVSKKNIKLDGSHPCLLYGYGGFNI-SVTPSFSV-SRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAK-KQNC 541 (732)
Q Consensus 465 i~~~~~~p~~~~~~~~~P~vv~~hG~~~~-~~~~~~~~-~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~-~~~~ 541 (732)
+..-++.|+.....+ .|++|++|||.-. .....|.. .....+..+..+|+.++||-|- +| |...+.... +-..
T Consensus 97 LylNV~tp~~~~~~~-~pV~V~iHGG~~~~gs~~~~~~~~~~~~~~~~~VVvVt~~YRLG~-lG--F~st~d~~~~gN~g 172 (545)
T KOG1516|consen 97 LYLNVYTPQGCSESK-LPVMVYIHGGGFQFGSASSFEIISPAYVLLLKDVVVVTINYRLGP-LG--FLSTGDSAAPGNLG 172 (545)
T ss_pred ceEEEeccCCCccCC-CCEEEEEeCCceeeccccchhhcCchhccccCCEEEEEeccccee-ce--eeecCCCCCCCccc
Confidence 566677777643223 8999999999322 11111211 1134455578999999999652 22 222222222 2334
Q ss_pred HHHHHHHHHHHHHc---CCCCCCcEEEEecChhHHHHHHHHhh--CCCeeeEEEEcCCcc
Q 004766 542 FDDFISASEYLISA---GYTQSRKLCIEGGSNGGLLVGACINQ--RPDLFGCALAHVGVM 596 (732)
Q Consensus 542 ~~D~~~~~~~l~~~---~~~d~~~i~i~G~S~GG~l~~~~~~~--~p~~f~a~v~~~p~~ 596 (732)
+.|.+.|++|+.++ ---||++|.++|+|+||..+..++.- ...+|+.+|+.++..
T Consensus 173 l~Dq~~AL~wv~~~I~~FGGdp~~vTl~G~saGa~~v~~l~~Sp~s~~LF~~aI~~SG~~ 232 (545)
T KOG1516|consen 173 LFDQLLALRWVKDNIPSFGGDPKNVTLFGHSAGAASVSLLTLSPHSRGLFHKAISMSGNA 232 (545)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCeEEEEeechhHHHHHHHhcCHhhHHHHHHHHhhcccc
Confidence 78999999999865 23699999999999999998877763 225898888887753
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.0012 Score=64.87 Aligned_cols=203 Identities=15% Similarity=0.069 Sum_probs=102.6
Q ss_pred EEEEEECCCCceec-----ccccc-eeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCCcccEEEEEECCCCCCC-
Q 004766 159 TIKLMRIEDQIVEA-----DALSW-FKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSE- 231 (732)
Q Consensus 159 ~i~v~dl~~g~~~~-----~~~~~-~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~- 231 (732)
-|++||.-+|+... +..+. ....++.|||||.+|+-. +.+.|...++..+...
T Consensus 134 PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG--------------------ykrcirvFdt~RpGr~c 193 (406)
T KOG2919|consen 134 PIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG--------------------YKRCIRVFDTSRPGRDC 193 (406)
T ss_pred ceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec--------------------ccceEEEeeccCCCCCC
Confidence 47888888887431 11110 012678999999888743 3445666665322211
Q ss_pred C--eEEEecC-CCCeeEEEeEEecC-CcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCCCCcEEeeecccceE-
Q 004766 232 D--ILCWKDP-EHPKYIFSGHVTED-GQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQY- 306 (732)
Q Consensus 232 ~--~~v~~~~-~~~~~~~~~~~SpD-g~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~- 306 (732)
+ .+++... ...+.+.-+++||- .+.++..+... ...||-.+-. .|.. +..+....+
T Consensus 194 ~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q---~~giy~~~~~---------------~pl~-llggh~gGvT 254 (406)
T KOG2919|consen 194 PVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQ---RVGIYNDDGR---------------RPLQ-LLGGHGGGVT 254 (406)
T ss_pred cchhhhhcccccccceeeeeeccCCCCcceeeecccc---eeeeEecCCC---------------Ccee-eecccCCCee
Confidence 0 1111111 11234556788884 44665554322 2445543311 1122 222333222
Q ss_pred -EEEEecCCeEEEEeCCCCCCceEEEEeCCCCCC-ceEeccCCC--CCceeEEEEecCCEEEEEEecCCeeEEEEEeCCC
Q 004766 307 -EVIANDDTVFTFLTNKDAPKYKIIRVDLKEPND-WFEVIPEAE--RDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKN 382 (732)
Q Consensus 307 -~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~-~~~l~~~~~--~~~l~~~~~~~~~~l~~~~~~~g~~~l~~~d~~~ 382 (732)
..|.+||++|+.-+.. .-+|..+|+..-.. .-.|-.+.. +..| -|.+.+.+.+++....+| .|.+||+++
T Consensus 255 hL~~~edGn~lfsGaRk---~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI-~FDld~~~~~LasG~tdG--~V~vwdlk~ 328 (406)
T KOG2919|consen 255 HLQWCEDGNKLFSGARK---DDKILCWDIRYSRDPVYALERHVGDTNQRI-LFDLDPKGEILASGDTDG--SVRVWDLKD 328 (406)
T ss_pred eEEeccCcCeecccccC---CCeEEEEeehhccchhhhhhhhccCccceE-EEecCCCCceeeccCCCc--cEEEEecCC
Confidence 3589999998854433 34799999875431 111222221 1222 244455567777765554 688899875
Q ss_pred -CceeeecccccceeeEeecccCCc
Q 004766 383 -GSLLHQLPIEIGSVNAISARREDS 406 (732)
Q Consensus 383 -g~~~~~l~~~~g~v~~~~~s~d~~ 406 (732)
|.....+......+..+++.|-=.
T Consensus 329 ~gn~~sv~~~~sd~vNgvslnP~mp 353 (406)
T KOG2919|consen 329 LGNEVSVTGNYSDTVNGVSLNPIMP 353 (406)
T ss_pred CCCcccccccccccccceecCcccc
Confidence 553222222244566667666533
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.0015 Score=64.25 Aligned_cols=105 Identities=12% Similarity=0.183 Sum_probs=70.3
Q ss_pred EEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCcee-cccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcc
Q 004766 134 LIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVE-ADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTET 212 (732)
Q Consensus 134 ~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~-~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~ 212 (732)
+..+.|+-|.-++..+....+ .+.+|++..-+-. ....+....+...|||||+.|+-++
T Consensus 51 i~yieW~ads~~ilC~~yk~~----~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~ts---------------- 110 (447)
T KOG4497|consen 51 IVYIEWKADSCHILCVAYKDP----KVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTS---------------- 110 (447)
T ss_pred hhheeeeccceeeeeeeeccc----eEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeee----------------
Confidence 347889999999888875543 6889998766522 1111222347899999999999874
Q ss_pred cCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCC
Q 004766 213 DSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENC 265 (732)
Q Consensus 213 ~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~ 265 (732)
....+|-+|.+.|... ....-+.. ..-++++.|||++.++.+.+..
T Consensus 111 --eF~lriTVWSL~t~~~---~~~~~pK~--~~kg~~f~~dg~f~ai~sRrDC 156 (447)
T KOG4497|consen 111 --EFDLRITVWSLNTQKG---YLLPHPKT--NVKGYAFHPDGQFCAILSRRDC 156 (447)
T ss_pred --cceeEEEEEEecccee---EEeccccc--CceeEEECCCCceeeeeecccH
Confidence 2344677788876532 22222222 1247899999999999887654
|
|
| >TIGR03502 lipase_Pla1_cef extracellular lipase, Pla-1/cef family | Back alignment and domain information |
|---|
Probab=97.89 E-value=5.8e-05 Score=85.67 Aligned_cols=100 Identities=13% Similarity=0.078 Sum_probs=66.1
Q ss_pred CCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchh--HH-----hc---cc---------ccCCc
Q 004766 479 GSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEE--WH-----KG---GA---------LAKKQ 539 (732)
Q Consensus 479 ~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~--~~-----~~---~~---------~~~~~ 539 (732)
...|+||++||..+... .|.. +...|.++||.|+++|+||+|..... .. .. +. +.+-.
T Consensus 447 ~g~P~VVllHG~~g~~~--~~~~-lA~~La~~Gy~VIaiDlpGHG~S~~~~~~~~~~a~~~~~~~y~Nl~~l~~aRDn~r 523 (792)
T TIGR03502 447 DGWPVVIYQHGITGAKE--NALA-FAGTLAAAGVATIAIDHPLHGARSFDANASGVNATNANVLAYMNLASLLVARDNLR 523 (792)
T ss_pred CCCcEEEEeCCCCCCHH--HHHH-HHHHHHhCCcEEEEeCCCCCCccccccccccccccccCccceeccccccccccCHH
Confidence 34689999999877643 3332 34556658999999999999875322 00 00 00 11223
Q ss_pred cHHHHHHHHHHHHH------Hc----CCCCCCcEEEEecChhHHHHHHHHhh
Q 004766 540 NCFDDFISASEYLI------SA----GYTQSRKLCIEGGSNGGLLVGACINQ 581 (732)
Q Consensus 540 ~~~~D~~~~~~~l~------~~----~~~d~~~i~i~G~S~GG~l~~~~~~~ 581 (732)
....|+......|. +. +-.+..++.++||||||.+...++..
T Consensus 524 Q~v~Dll~L~~~l~~~~~~~~~~~~~~~~~~~~V~~lGHSLGgiig~~~~~~ 575 (792)
T TIGR03502 524 QSILDLLGLRLSLNGSALAGAPLSGINVIDGSKVSFLGHSLGGIVGTSFIAY 575 (792)
T ss_pred HHHHHHHHHHHHHhcccccccccccccCCCCCcEEEEecCHHHHHHHHHHHh
Confidence 34677777777665 11 12456799999999999999988875
|
Members of this protein family are bacterial lipoproteins largely from the Gammaproteobacteria. Characterized members are expressed in extracellularly and have esterase activity. Members include the lipase Pla-1 from Aeromonas hydrophila (AF092033) and CHO cell elongation factor (cef) from Vibrio hollisae |
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.0014 Score=65.44 Aligned_cols=244 Identities=12% Similarity=0.010 Sum_probs=135.3
Q ss_pred CEEEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecccccce-eeeeEEEEeCCcEEEEEEecCCCCCCCCCCC
Q 004766 131 TAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWF-KFSSIAWTHDSKGFFYSRYPAPKEGKDMDAG 209 (732)
Q Consensus 131 ~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~~~~-~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~ 209 (732)
..++..+-+.|+--.++-+ ++..+|++||..+|+...--.+.. ....++++.-|+.|+-++.+-
T Consensus 108 r~~vt~v~~hp~~~~v~~a-----s~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl---------- 172 (406)
T KOG0295|consen 108 RSSVTRVIFHPSEALVVSA-----SEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDL---------- 172 (406)
T ss_pred ccceeeeeeccCceEEEEe-----cCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCcc----------
Confidence 3456677788876544433 345799999999999632111111 136788988898887665332
Q ss_pred CcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCccccccc
Q 004766 210 TETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKR 289 (732)
Q Consensus 210 ~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~ 289 (732)
.+.+|+.++........ .+. ...+..+.+=|-|.+|+-.+.+ +.|..++.+++-+
T Consensus 173 ---------~~~LWd~~~~~~c~ks~-~gh--~h~vS~V~f~P~gd~ilS~srD-----~tik~We~~tg~c-------- 227 (406)
T KOG0295|consen 173 ---------SAKLWDFDTFFRCIKSL-IGH--EHGVSSVFFLPLGDHILSCSRD-----NTIKAWECDTGYC-------- 227 (406)
T ss_pred ---------chhheeHHHHHHHHHHh-cCc--ccceeeEEEEecCCeeeecccc-----cceeEEeccccee--------
Confidence 25667766531110011 111 1234577888999888765543 3377788887532
Q ss_pred CCCCCcEEeeecccceEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEec----------
Q 004766 290 DGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVN---------- 359 (732)
Q Consensus 290 ~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~---------- 359 (732)
...+....+ =+..+.+.++..++.+..+.. .|-.+-++++..-.++..++ ..++-+.|.+
T Consensus 228 -----v~t~~~h~e-wvr~v~v~~DGti~As~s~dq--tl~vW~~~t~~~k~~lR~hE--h~vEci~wap~~~~~~i~~a 297 (406)
T KOG0295|consen 228 -----VKTFPGHSE-WVRMVRVNQDGTIIASCSNDQ--TLRVWVVATKQCKAELREHE--HPVECIAWAPESSYPSISEA 297 (406)
T ss_pred -----EEeccCchH-hEEEEEecCCeeEEEecCCCc--eEEEEEeccchhhhhhhccc--cceEEEEecccccCcchhhc
Confidence 122222111 122344444444444443322 34444445542111222221 2233322221
Q ss_pred -----CCEEEEEEecCCeeEEEEEeCCCCceeeecccccceeeEeecccCCcEEEEEEecCCCCceEEEEECCCCC
Q 004766 360 -----LNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 430 (732)
Q Consensus 360 -----~~~l~~~~~~~g~~~l~~~d~~~g~~~~~l~~~~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~~ 430 (732)
+..+.+...+| ..|..||..+|..+-+|......|.+++++|.|++++ +... -.++..||+..+.
T Consensus 298 t~~~~~~~~l~s~SrD--ktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~-ScaD---Dktlrvwdl~~~~ 367 (406)
T KOG0295|consen 298 TGSTNGGQVLGSGSRD--KTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYIL-SCAD---DKTLRVWDLKNLQ 367 (406)
T ss_pred cCCCCCccEEEeeccc--ceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEE-EEec---CCcEEEEEeccce
Confidence 12466666666 4788999999987666665666788899999887554 5544 3467777877653
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.0017 Score=63.15 Aligned_cols=194 Identities=13% Similarity=0.112 Sum_probs=115.3
Q ss_pred eeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEE
Q 004766 180 FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVM 259 (732)
Q Consensus 180 ~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~ 259 (732)
+....|+|||..|+-. +..++|++|+.-... ++..+.. .+.+-++.+.|++||..|+-
T Consensus 50 I~~~~F~P~gs~~aSg-------------------G~Dr~I~LWnv~gdc-eN~~~lk--gHsgAVM~l~~~~d~s~i~S 107 (338)
T KOG0265|consen 50 IYTIKFHPDGSCFASG-------------------GSDRAIVLWNVYGDC-ENFWVLK--GHSGAVMELHGMRDGSHILS 107 (338)
T ss_pred EEEEEECCCCCeEeec-------------------CCcceEEEEeccccc-cceeeec--cccceeEeeeeccCCCEEEE
Confidence 4678899999877753 466789999976443 3333333 34456789999999999976
Q ss_pred EEecCCcceEEEEEEeCCCCCCCcccccccCCCCCcEEeeecccceEEEEEe--cCCeEEEEeCCCCCCceEEEEeCCCC
Q 004766 260 CIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIAN--DDTVFTFLTNKDAPKYKIIRVDLKEP 337 (732)
Q Consensus 260 ~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~--dg~~l~~~s~~~~~~~~l~~~d~~~~ 337 (732)
.+.+ ..++.+|.++|+. .++...... -+....| .|-.++. +. .+..++-++|+.+.
T Consensus 108 ~gtD-----k~v~~wD~~tG~~-------------~rk~k~h~~-~vNs~~p~rrg~~lv~-Sg--sdD~t~kl~D~R~k 165 (338)
T KOG0265|consen 108 CGTD-----KTVRGWDAETGKR-------------IRKHKGHTS-FVNSLDPSRRGPQLVC-SG--SDDGTLKLWDIRKK 165 (338)
T ss_pred ecCC-----ceEEEEeccccee-------------eehhccccc-eeeecCccccCCeEEE-ec--CCCceEEEEeeccc
Confidence 6532 4588999988642 111111111 1112223 3433333 22 23457888888766
Q ss_pred CCceEeccCCCCCceeEEEEecCCEEEEEEecCCeeEEEEEeCCCCceeeecccccceeeEeecccCCcEEEEEEecCCC
Q 004766 338 NDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLI 417 (732)
Q Consensus 338 ~~~~~l~~~~~~~~l~~~~~~~~~~l~~~~~~~g~~~l~~~d~~~g~~~~~l~~~~g~v~~~~~s~d~~~l~~~~ss~~~ 417 (732)
..++ +++. ...+.++.|.....=+++..-| ..|.+||+..+..+..+......|..++.+++|..+. ..++
T Consensus 166 ~~~~-t~~~--kyqltAv~f~d~s~qv~sggId--n~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~ll--snsM-- 236 (338)
T KOG0265|consen 166 EAIK-TFEN--KYQLTAVGFKDTSDQVISGGID--NDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLL--SNSM-- 236 (338)
T ss_pred chhh-cccc--ceeEEEEEecccccceeecccc--CceeeeccccCcceEEeecccCceeeEEeccCCCccc--cccc--
Confidence 5333 2322 3567788887543334444444 4788999965555456665566788888889887543 2232
Q ss_pred CceEEEEEC
Q 004766 418 PGIVYQCNL 426 (732)
Q Consensus 418 p~~~y~~d~ 426 (732)
-.++-++|.
T Consensus 237 d~tvrvwd~ 245 (338)
T KOG0265|consen 237 DNTVRVWDV 245 (338)
T ss_pred cceEEEEEe
Confidence 245555554
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00065 Score=64.21 Aligned_cols=197 Identities=13% Similarity=0.131 Sum_probs=119.2
Q ss_pred CEEEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecccc--cceeeeeEEEEeCCcEEEEEEecCCCCCCCCCC
Q 004766 131 TAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADAL--SWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDA 208 (732)
Q Consensus 131 ~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~--~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~ 208 (732)
+.-+..++||.|.++|+ .+|.| .-|+|+|++.-+.-+... ....+..+.|....+.|+-++.+
T Consensus 100 khivk~~af~~ds~~ll----tgg~e-kllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd---------- 164 (334)
T KOG0278|consen 100 KHIVKAVAFSQDSNYLL----TGGQE-KLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADD---------- 164 (334)
T ss_pred hheeeeEEecccchhhh----ccchH-HHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccC----------
Confidence 34577889999999887 23443 578999997654222111 11123567888888888765432
Q ss_pred CCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccc
Q 004766 209 GTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKK 288 (732)
Q Consensus 209 ~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~ 288 (732)
..|.+|+..|+.....+-+ + .-..++.+|+||++|.+.-. +.|-.+|..+..
T Consensus 165 ---------~tVRLWD~rTgt~v~sL~~--~---s~VtSlEvs~dG~ilTia~g------ssV~Fwdaksf~-------- 216 (334)
T KOG0278|consen 165 ---------KTVRLWDHRTGTEVQSLEF--N---SPVTSLEVSQDGRILTIAYG------SSVKFWDAKSFG-------- 216 (334)
T ss_pred ---------CceEEEEeccCcEEEEEec--C---CCCcceeeccCCCEEEEecC------ceeEEecccccc--------
Confidence 3588888887754332222 1 12357889999999876532 235566765521
Q ss_pred cCCCCCcEEeeecccceEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecCCEEEEEEe
Q 004766 289 RDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYL 368 (732)
Q Consensus 289 ~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~~l~~~~~ 368 (732)
.++...-.........+|+. .+++.. +..+.++++|-.++.++..... .....+..+.+++++.+|.+.+
T Consensus 217 -----~lKs~k~P~nV~SASL~P~k-~~fVaG---ged~~~~kfDy~TgeEi~~~nk-gh~gpVhcVrFSPdGE~yAsGS 286 (334)
T KOG0278|consen 217 -----LLKSYKMPCNVESASLHPKK-EFFVAG---GEDFKVYKFDYNTGEEIGSYNK-GHFGPVHCVRFSPDGELYASGS 286 (334)
T ss_pred -----ceeeccCccccccccccCCC-ceEEec---CcceEEEEEeccCCceeeeccc-CCCCceEEEEECCCCceeeccC
Confidence 01111111111222366754 555543 3467899999999874332212 2235678899999889999999
Q ss_pred cCCeeEEEEEeC
Q 004766 369 SDVKYVLQIRDL 380 (732)
Q Consensus 369 ~~g~~~l~~~d~ 380 (732)
+||.-+||....
T Consensus 287 EDGTirlWQt~~ 298 (334)
T KOG0278|consen 287 EDGTIRLWQTTP 298 (334)
T ss_pred CCceEEEEEecC
Confidence 998655555543
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.0042 Score=58.43 Aligned_cols=219 Identities=11% Similarity=0.066 Sum_probs=120.7
Q ss_pred EEEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecc-cccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCC
Q 004766 132 AALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEAD-ALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGT 210 (732)
Q Consensus 132 ~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~-~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~ 210 (732)
..+-....|-|...+|-. +|+ ..+++||++||+.... .........+.|..++ .++++.
T Consensus 60 ~EVlD~~~s~Dnskf~s~---GgD--k~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNees-SVv~Sg-------------- 119 (307)
T KOG0316|consen 60 HEVLDAALSSDNSKFASC---GGD--KAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEES-SVVASG-------------- 119 (307)
T ss_pred ceeeeccccccccccccC---CCC--ceEEEEEcccCeeeeecccccceeeEEEecCcc-eEEEec--------------
Confidence 456677788888888722 333 5899999999996542 2223345678887555 454442
Q ss_pred cccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccC
Q 004766 211 ETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRD 290 (732)
Q Consensus 211 ~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~ 290 (732)
.....+..|+-.+...+.+.++.+..+ -+.++.. .+.-|+-.+.++ .+..+|+..|.
T Consensus 120 ----sfD~s~r~wDCRS~s~ePiQildea~D--~V~Si~v--~~heIvaGS~DG-----tvRtydiR~G~---------- 176 (307)
T KOG0316|consen 120 ----SFDSSVRLWDCRSRSFEPIQILDEAKD--GVSSIDV--AEHEIVAGSVDG-----TVRTYDIRKGT---------- 176 (307)
T ss_pred ----cccceeEEEEcccCCCCccchhhhhcC--ceeEEEe--cccEEEeeccCC-----cEEEEEeecce----------
Confidence 234568888887665555555544322 1234433 344444333222 24555655432
Q ss_pred CCCCcEEeeecccc-eE--EEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecCCEEEEEE
Q 004766 291 GLLPFVKLIDGFDA-QY--EVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSY 367 (732)
Q Consensus 291 ~~~~~~~l~~~~~~-~~--~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~~l~~~~ 367 (732)
+..++-. .+ ..+++||+-.+.-+ . +..|-++|-++++-.+....+.....=....+...+..++..
T Consensus 177 -------l~sDy~g~pit~vs~s~d~nc~La~~-l---~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sg 245 (307)
T KOG0316|consen 177 -------LSSDYFGHPITSVSFSKDGNCSLASS-L---DSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSG 245 (307)
T ss_pred -------eehhhcCCcceeEEecCCCCEEEEee-c---cceeeecccchhHHHHHhcccccceeeeeeeecccceeEEec
Confidence 2222111 11 24888888665433 2 335777887777622222233221111233444446788888
Q ss_pred ecCCeeEEEEEeCCCCceeeecccccce-eeEeecccCCc
Q 004766 368 LSDVKYVLQIRDLKNGSLLHQLPIEIGS-VNAISARREDS 406 (732)
Q Consensus 368 ~~~g~~~l~~~d~~~g~~~~~l~~~~g~-v~~~~~s~d~~ 406 (732)
+++| .+|.||+-++..+..+..+... +..++..|.-.
T Consensus 246 SEDG--~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~ 283 (307)
T KOG0316|consen 246 SEDG--KVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMD 283 (307)
T ss_pred cCCc--eEEEEEeccceeeeeeccCCceeEEeeecccCcc
Confidence 8985 7999999877665555544333 44555544433
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00027 Score=71.31 Aligned_cols=222 Identities=10% Similarity=0.046 Sum_probs=122.8
Q ss_pred EEEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCc---eecccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCC
Q 004766 132 AALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQI---VEADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDA 208 (732)
Q Consensus 132 ~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~---~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~ 208 (732)
+.+..+.|.|+||+|.-.++. |. ++| |+..+-. .++. ....+....||++|.+++-..
T Consensus 97 c~V~~v~WtPeGRRLltgs~S-GE--FtL--WNg~~fnFEtilQa--HDs~Vr~m~ws~~g~wmiSgD------------ 157 (464)
T KOG0284|consen 97 CPVNVVRWTPEGRRLLTGSQS-GE--FTL--WNGTSFNFETILQA--HDSPVRTMKWSHNGTWMISGD------------ 157 (464)
T ss_pred cceeeEEEcCCCceeEeeccc-cc--EEE--ecCceeeHHHHhhh--hcccceeEEEccCCCEEEEcC------------
Confidence 567889999999999877542 21 444 5542211 1111 111247899999998877542
Q ss_pred CCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccc
Q 004766 209 GTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKK 288 (732)
Q Consensus 209 ~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~ 288 (732)
....|.+|...-... ..+... +...+..+++||...-.+-.+.+ +.|.++|.....
T Consensus 158 -------~gG~iKyWqpnmnnV---k~~~ah-h~eaIRdlafSpnDskF~t~SdD-----g~ikiWdf~~~k-------- 213 (464)
T KOG0284|consen 158 -------KGGMIKYWQPNMNNV---KIIQAH-HAEAIRDLAFSPNDSKFLTCSDD-----GTIKIWDFRMPK-------- 213 (464)
T ss_pred -------CCceEEecccchhhh---HHhhHh-hhhhhheeccCCCCceeEEecCC-----CeEEEEeccCCc--------
Confidence 223466776543321 222211 11234578888844433333322 346666755421
Q ss_pred cCCCCCcEEeee-cccceEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecCCEEEEEE
Q 004766 289 RDGLLPFVKLID-GFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSY 367 (732)
Q Consensus 289 ~~~~~~~~~l~~-~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~~l~~~~ 367 (732)
+.+.|.. +++.....|.|.- .|++...++. -|-.+|.+++.++..|-.+. ..+-.+.|.+++..+++.
T Consensus 214 -----ee~vL~GHgwdVksvdWHP~k-gLiasgskDn---lVKlWDprSg~cl~tlh~HK--ntVl~~~f~~n~N~Llt~ 282 (464)
T KOG0284|consen 214 -----EERVLRGHGWDVKSVDWHPTK-GLIASGSKDN---LVKLWDPRSGSCLATLHGHK--NTVLAVKFNPNGNWLLTG 282 (464)
T ss_pred -----hhheeccCCCCcceeccCCcc-ceeEEccCCc---eeEeecCCCcchhhhhhhcc--ceEEEEEEcCCCCeeEEc
Confidence 1122322 4444444587754 4554444432 56678988887666565554 567788888766677777
Q ss_pred ecCCeeEEEEEeCCCCceeeecccccceeeEeecccCCcEEE
Q 004766 368 LSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVF 409 (732)
Q Consensus 368 ~~~g~~~l~~~d~~~g~~~~~l~~~~g~v~~~~~s~d~~~l~ 409 (732)
.+| ..+.++|+.+-+.+.....+...+..+.+.|-...++
T Consensus 283 skD--~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lf 322 (464)
T KOG0284|consen 283 SKD--QSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLF 322 (464)
T ss_pred cCC--ceEEEEehhHhHHHHHhhcchhhheeeccccccccce
Confidence 777 4677888763333333333334455666666444443
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.0033 Score=62.60 Aligned_cols=235 Identities=13% Similarity=0.101 Sum_probs=137.0
Q ss_pred EEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceec-cc--ccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCC
Q 004766 133 ALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEA-DA--LSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAG 209 (732)
Q Consensus 133 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~-~~--~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~ 209 (732)
.+..+.+-|-..++| .|+...+|.|||+++|.... .+ +.. ..+++.|+-.-++|-+
T Consensus 153 WVr~vavdP~n~wf~-----tgs~DrtikIwDlatg~LkltltGhi~~--vr~vavS~rHpYlFs~-------------- 211 (460)
T KOG0285|consen 153 WVRSVAVDPGNEWFA-----TGSADRTIKIWDLATGQLKLTLTGHIET--VRGVAVSKRHPYLFSA-------------- 211 (460)
T ss_pred eEEEEeeCCCceeEE-----ecCCCceeEEEEcccCeEEEeecchhhe--eeeeeecccCceEEEe--------------
Confidence 366778899888877 34555799999999998532 22 222 3678999877666654
Q ss_pred CcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCccccccc
Q 004766 210 TETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKR 289 (732)
Q Consensus 210 ~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~ 289 (732)
+...+|..|+|...+ +|-+--.+-.-+..++..|--..|+-.+ +. +.+.++|..+..
T Consensus 212 -----gedk~VKCwDLe~nk----vIR~YhGHlS~V~~L~lhPTldvl~t~g-rD----st~RvWDiRtr~--------- 268 (460)
T KOG0285|consen 212 -----GEDKQVKCWDLEYNK----VIRHYHGHLSGVYCLDLHPTLDVLVTGG-RD----STIRVWDIRTRA--------- 268 (460)
T ss_pred -----cCCCeeEEEechhhh----hHHHhccccceeEEEeccccceeEEecC-Cc----ceEEEeeecccc---------
Confidence 344579999997653 2211111112234556666655554332 22 335666776631
Q ss_pred CCCCCcEEeeecccceEE-EEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecCCEEEEEEe
Q 004766 290 DGLLPFVKLIDGFDAQYE-VIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYL 368 (732)
Q Consensus 290 ~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~~l~~~~~ 368 (732)
++..+......... .+.|-...++-.+. ...|..+|+..++....++.+. ..+..+...+...++++..
T Consensus 269 ----~V~~l~GH~~~V~~V~~~~~dpqvit~S~----D~tvrlWDl~agkt~~tlt~hk--ksvral~lhP~e~~fASas 338 (460)
T KOG0285|consen 269 ----SVHVLSGHTNPVASVMCQPTDPQVITGSH----DSTVRLWDLRAGKTMITLTHHK--KSVRALCLHPKENLFASAS 338 (460)
T ss_pred ----eEEEecCCCCcceeEEeecCCCceEEecC----CceEEEeeeccCceeEeeeccc--ceeeEEecCCchhhhhccC
Confidence 12233222211111 13332233443222 3468888998887566677665 5667777777455666665
Q ss_pred cCCeeEEEEEeCCCCceeeecccccceeeEeecccCCcEEEEEEecCCCCceEEEEECCCC
Q 004766 369 SDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTE 429 (732)
Q Consensus 369 ~~g~~~l~~~d~~~g~~~~~l~~~~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~ 429 (732)
.| .|..|++..|+.+..+.....-+..++...|+ ++++- ..-..++.+|..+|
T Consensus 339 ~d---nik~w~~p~g~f~~nlsgh~~iintl~~nsD~--v~~~G---~dng~~~fwdwksg 391 (460)
T KOG0285|consen 339 PD---NIKQWKLPEGEFLQNLSGHNAIINTLSVNSDG--VLVSG---GDNGSIMFWDWKSG 391 (460)
T ss_pred Cc---cceeccCCccchhhccccccceeeeeeeccCc--eEEEc---CCceEEEEEecCcC
Confidence 55 58888987787666665555555556655554 44432 23467888888776
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.0055 Score=62.78 Aligned_cols=236 Identities=15% Similarity=0.089 Sum_probs=126.4
Q ss_pred EeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccC
Q 004766 135 IKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDS 214 (732)
Q Consensus 135 ~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~ 214 (732)
.++.|-|+.+.|.|+ +-.|. .|+.+|.++|+......... +++...-.++..|+ +....
T Consensus 28 EgP~w~~~~~~L~w~-DI~~~---~i~r~~~~~g~~~~~~~p~~-~~~~~~~d~~g~Lv-~~~~g--------------- 86 (307)
T COG3386 28 EGPVWDPDRGALLWV-DILGG---RIHRLDPETGKKRVFPSPGG-FSSGALIDAGGRLI-ACEHG--------------- 86 (307)
T ss_pred cCccCcCCCCEEEEE-eCCCC---eEEEecCCcCceEEEECCCC-cccceeecCCCeEE-EEccc---------------
Confidence 378899999988666 44443 78999998886433222221 24444443443443 33221
Q ss_pred CcccEEEEEECCCCCCCCeEEEecCCC-C-eeEEEeEEecCCcEEEEEEe-----cCC-cceEEEEEEeCCCCCCCcccc
Q 004766 215 NLYHEFYYHFLGTKQSEDILCWKDPEH-P-KYIFSGHVTEDGQYLVMCIE-----ENC-DPVNKVYYCDLSALPEGLEGF 286 (732)
Q Consensus 215 ~~~~~v~~~~lgt~~~~~~~v~~~~~~-~-~~~~~~~~SpDg~~l~~~~~-----~~~-~~~~~l~~~d~~~~~~~~~~~ 286 (732)
+++++..++... .++.+..++ + .........|||+.-+-... ... .....||.++..+.
T Consensus 87 -----~~~~~~~~~~~~-t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~------- 153 (307)
T COG3386 87 -----VRLLDPDTGGKI-TLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGG------- 153 (307)
T ss_pred -----cEEEeccCCcee-EEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCC-------
Confidence 334443222210 122221111 0 11235667888876543332 111 12346888886442
Q ss_pred cccCCCCCcEEeeec-cc-ceEEEEEecCCeEEEEeCCCCCCceEEEEeCCC--CC---Cc-eEeccCCCCCceeEEEEe
Q 004766 287 KKRDGLLPFVKLIDG-FD-AQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKE--PN---DW-FEVIPEAERDVLESATAV 358 (732)
Q Consensus 287 ~~~~~~~~~~~l~~~-~~-~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~--~~---~~-~~l~~~~~~~~l~~~~~~ 358 (732)
...+..+ .. ..-..|||||+.+|+.-. ...+|++++++. +. .. ...... +.....++.+.
T Consensus 154 --------~~~l~~~~~~~~NGla~SpDg~tly~aDT---~~~~i~r~~~d~~~g~~~~~~~~~~~~~-~~G~PDG~~vD 221 (307)
T COG3386 154 --------VVRLLDDDLTIPNGLAFSPDGKTLYVADT---PANRIHRYDLDPATGPIGGRRGFVDFDE-EPGLPDGMAVD 221 (307)
T ss_pred --------EEEeecCcEEecCceEECCCCCEEEEEeC---CCCeEEEEecCcccCccCCcceEEEccC-CCCCCCceEEe
Confidence 2233322 11 111259999998887533 346799988762 11 11 112222 12334567777
Q ss_pred cCCEEEEEEecCCeeEEEEEeCCCCceeeecccccceeeEeec-ccCCcEEEEEEecCCCC
Q 004766 359 NLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISA-RREDSVVFISFTSFLIP 418 (732)
Q Consensus 359 ~~~~l~~~~~~~g~~~l~~~d~~~g~~~~~l~~~~g~v~~~~~-s~d~~~l~~~~ss~~~p 418 (732)
.++.+++....+| ..|.+++++ |+.+..+.+|...++...+ .++.++|+++.+....+
T Consensus 222 adG~lw~~a~~~g-~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~~~~~~ 280 (307)
T COG3386 222 ADGNLWVAAVWGG-GRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYITSARSGMS 280 (307)
T ss_pred CCCCEEEecccCC-ceEEEECCC-CcEEEEEECCCCCCccceEeCCCcCEEEEEecCCCCC
Confidence 6566775444443 589999998 9888888888433333332 45678888887766554
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.002 Score=71.67 Aligned_cols=179 Identities=15% Similarity=0.034 Sum_probs=107.0
Q ss_pred EEEEeCCCCCceEEeCCCCcCCCCCEEEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceec-ccccceeeeeEEE
Q 004766 107 LYVQDSLDAKAKVLLDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEA-DALSWFKFSSIAW 185 (732)
Q Consensus 107 l~~r~~~~~~~~~l~D~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~-~~~~~~~~~~~~W 185 (732)
+.+-+-+.+++..+|+.-++ .+....++-+|+++|+. ++...|.+.++.++.... .......+.++.+
T Consensus 78 v~~y~fps~~~~~iL~Rftl------p~r~~~v~g~g~~iaag-----sdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~ 146 (933)
T KOG1274|consen 78 VLRYKFPSGEEDTILARFTL------PIRDLAVSGSGKMIAAG-----SDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSY 146 (933)
T ss_pred EEEeeCCCCCccceeeeeec------cceEEEEecCCcEEEee-----cCceeEEEEeccccchheeecccCCceeeeeE
Confidence 44444444555555554333 36688999999999966 455789999987765321 1112223578999
Q ss_pred EeCCcEEEEEEecCCCCCCCCCCCCcccCCcccEEEEEECCCCCCCCeE--EEe--cCCCCeeEEEeEEecCCcEEEEEE
Q 004766 186 THDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDIL--CWK--DPEHPKYIFSGHVTEDGQYLVMCI 261 (732)
Q Consensus 186 spDg~~l~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~--v~~--~~~~~~~~~~~~~SpDg~~l~~~~ 261 (732)
.|.+..|+.+..++ +|+.|++.++.....+ +.. +.........++|+|+|..+++..
T Consensus 147 ~p~~~fLAvss~dG-------------------~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~ 207 (933)
T KOG1274|consen 147 DPKGNFLAVSSCDG-------------------KVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPP 207 (933)
T ss_pred cCCCCEEEEEecCc-------------------eEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeec
Confidence 99999999887554 6888888765321110 000 011122345789999977777765
Q ss_pred ecCCcceEEEEEEeCCCCCCCcccccccCCCCCcEEeeecccc---eEEEEEecCCeEEEEeCCCCCCceEEEEeCCCC
Q 004766 262 EENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDA---QYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEP 337 (732)
Q Consensus 262 ~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~ 337 (732)
.++ .|-+++..+.. ..-.|...... ....|+|.|++|+-.+- +++|.++|.++.
T Consensus 208 ~d~-----~Vkvy~r~~we-------------~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~----~g~I~vWnv~t~ 264 (933)
T KOG1274|consen 208 VDN-----TVKVYSRKGWE-------------LQFKLRDKLSSSKFSDLQWSPNGKYIAASTL----DGQILVWNVDTH 264 (933)
T ss_pred cCC-----eEEEEccCCce-------------eheeecccccccceEEEEEcCCCcEEeeecc----CCcEEEEecccc
Confidence 543 36666665521 01122222111 23359999998875332 457889998753
|
|
| >PRK04940 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00077 Score=62.33 Aligned_cols=119 Identities=8% Similarity=-0.051 Sum_probs=72.6
Q ss_pred CcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCcccccccccCCCCCccccccCCCCCHHHHHHHHhcCcccCCCCCCC
Q 004766 561 RKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWE 640 (732)
Q Consensus 561 ~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~sp~~~~~~~~~ 640 (732)
++++|+|.|+||+.+.+++.++- .+ +|+..|.+.+...+.--.+. ..+|. --.++..+.++ ++.
T Consensus 60 ~~~~liGSSLGGyyA~~La~~~g--~~-aVLiNPAv~P~~~L~~~ig~--~~~y~-~~~~~h~~eL~-------~~~--- 123 (180)
T PRK04940 60 ERPLICGVGLGGYWAERIGFLCG--IR-QVIFNPNLFPEENMEGKIDR--PEEYA-DIATKCVTNFR-------EKN--- 123 (180)
T ss_pred CCcEEEEeChHHHHHHHHHHHHC--CC-EEEECCCCChHHHHHHHhCC--Ccchh-hhhHHHHHHhh-------hcC---
Confidence 46999999999999999999864 34 44566766654322111111 01111 12233333333 111
Q ss_pred CCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeCCCCCCCCCchHHHHHHHHHHHH
Q 004766 641 QNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYG 720 (732)
Q Consensus 641 ~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~ 720 (732)
.-..+++....|...++.++.+.++ +. ....+.+|+.|.|..- .+....+.+
T Consensus 124 --------p~r~~vllq~gDEvLDyr~a~~~y~---------------~~-y~~~v~~GGdH~f~~f----e~~l~~I~~ 175 (180)
T PRK04940 124 --------RDRCLVILSRNDEVLDSQRTAEELH---------------PY-YEIVWDEEQTHKFKNI----SPHLQRIKA 175 (180)
T ss_pred --------cccEEEEEeCCCcccCHHHHHHHhc---------------cC-ceEEEECCCCCCCCCH----HHHHHHHHH
Confidence 2246888899999999888765542 21 2467889999999753 245567888
Q ss_pred HHH
Q 004766 721 FMA 723 (732)
Q Consensus 721 fl~ 723 (732)
|+.
T Consensus 176 F~~ 178 (180)
T PRK04940 176 FKT 178 (180)
T ss_pred HHh
Confidence 873
|
|
| >TIGR01849 PHB_depoly_PhaZ polyhydroxyalkanoate depolymerase, intracellular | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0009 Score=70.74 Aligned_cols=86 Identities=13% Similarity=0.014 Sum_probs=56.4
Q ss_pred hHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhh
Q 004766 502 SRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQ 581 (732)
Q Consensus 502 ~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~ 581 (732)
+....|.. |+-|.+.|.+--+. .....+.-.++|++..+...++. +-++ +-++|.|+||.+++++++.
T Consensus 121 S~V~~Ll~-g~dVYl~DW~~p~~--------vp~~~~~f~ldDYi~~l~~~i~~--~G~~-v~l~GvCqgG~~~laa~Al 188 (406)
T TIGR01849 121 STVEALLP-DHDVYITDWVNARM--------VPLSAGKFDLEDYIDYLIEFIRF--LGPD-IHVIAVCQPAVPVLAAVAL 188 (406)
T ss_pred HHHHHHhC-CCcEEEEeCCCCCC--------CchhcCCCCHHHHHHHHHHHHHH--hCCC-CcEEEEchhhHHHHHHHHH
Confidence 34556663 99999999653221 01123455678887655544433 2344 9999999999998766664
Q ss_pred C-----CCeeeEEEEcCCccccc
Q 004766 582 R-----PDLFGCALAHVGVMDML 599 (732)
Q Consensus 582 ~-----p~~f~a~v~~~p~~d~~ 599 (732)
. |+..+.+++..+.+|..
T Consensus 189 ~a~~~~p~~~~sltlm~~PID~~ 211 (406)
T TIGR01849 189 MAENEPPAQPRSMTLMGGPIDAR 211 (406)
T ss_pred HHhcCCCCCcceEEEEecCccCC
Confidence 3 56688888877777753
|
This model represents an intracellular depolymerase for polyhydroxyalkanoate (PHA), a carbon and energy storing polyester that accumulates in granules in many bacterial species when carbon sources are abundant but other nutrients are limiting. This family is named for PHAs generally, rather than polyhydroxybutyrate (PHB) specificially as in Ralstonia eutropha H16, to avoid overcalling chemical specificity in other species. Note that this family lacks the classic GXSXG lipase motif and instead shows weak similarity to some |
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00018 Score=81.70 Aligned_cols=255 Identities=14% Similarity=0.060 Sum_probs=144.8
Q ss_pred eEEECCCCc-EEEEEEecc-------CCceEEEEEEECCCCc----eecccccceeeeeEEEEeCCcE---EEEEEecCC
Q 004766 136 KVSVSEDAK-YLAYALSYS-------GSDWATIKLMRIEDQI----VEADALSWFKFSSIAWTHDSKG---FFYSRYPAP 200 (732)
Q Consensus 136 ~~~~SPDG~-~la~~~~~~-------G~e~~~i~v~dl~~g~----~~~~~~~~~~~~~~~WspDg~~---l~y~~~~~~ 200 (732)
.++|||++. ++|-....+ -+...+|+..|..+.+ .........+|..++|++-|+. |+...
T Consensus 11 ~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG---- 86 (1049)
T KOG0307|consen 11 TFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQSSNRFNKLAWGSYGSHSHGLIAGG---- 86 (1049)
T ss_pred eEEecCCCchhhHHHhhhhccccccccccccceeeecccCccccccccccccccccceeeeecccCCCccceeecc----
Confidence 678999996 444332111 1222467777776655 1211122336789999998876 34332
Q ss_pred CCCCCCCCCCcccCCcccEEEEEECCC--CCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCC
Q 004766 201 KEGKDMDAGTETDSNLYHEFYYHFLGT--KQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSA 278 (732)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~v~~~~lgt--~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~ 278 (732)
..+..|-+|+... ......++.....+.+-+.++.|.+.+.-++.... ...+|++||+..
T Consensus 87 --------------~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa----~~geI~iWDlnn 148 (1049)
T KOG0307|consen 87 --------------LEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGA----DDGEILIWDLNK 148 (1049)
T ss_pred --------------ccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccC----CCCcEEEeccCC
Confidence 1223455665543 11122233333344556678899998884433321 146799999987
Q ss_pred CCCCcccccccCCCCCcEEeeecccceEEEEEec--CCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEE
Q 004766 279 LPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIAND--DTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESAT 356 (732)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~d--g~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~ 356 (732)
.. .+..........++..++.+ -.+++-. ...+++...+|++..+.+..+........+..+.
T Consensus 149 ~~------------tP~~~~~~~~~~eI~~lsWNrkvqhILAS---~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~ 213 (1049)
T KOG0307|consen 149 PE------------TPFTPGSQAPPSEIKCLSWNRKVSHILAS---GSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLA 213 (1049)
T ss_pred cC------------CCCCCCCCCCcccceEeccchhhhHHhhc---cCCCCCceeccccCCCcccccccCCCccceeeee
Confidence 32 11111111111223333332 2333322 2345578889998765344444443335678899
Q ss_pred EecC--CEEEEEEecCCeeEEEEEeCCCC-ceeeecccccceeeEeecccCCcEEEEEEecCCCCceEEEEECCCCC
Q 004766 357 AVNL--NQMIVSYLSDVKYVLQIRDLKNG-SLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 430 (732)
Q Consensus 357 ~~~~--~~l~~~~~~~g~~~l~~~d~~~g-~~~~~l~~~~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~~ 430 (732)
|.++ ..+++...++..+.|-+||+..- ..++.++.+...+-++++.+.+++++++.. .-.+++.++..+++
T Consensus 214 WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsg---kD~~ii~wN~~tgE 287 (1049)
T KOG0307|consen 214 WHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSG---KDNRIICWNPNTGE 287 (1049)
T ss_pred eCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhccc---CCCCeeEecCCCce
Confidence 9885 46888888888899999997522 233455555555557888887777766543 23578888988874
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00088 Score=65.23 Aligned_cols=207 Identities=14% Similarity=0.118 Sum_probs=116.7
Q ss_pred EEeEEECCCCcEEEEEEeccCCceEEEEEEECCC------------Cc-----eec----ccccceeeeeEEEEeCCcEE
Q 004766 134 LIKVSVSEDAKYLAYALSYSGSDWATIKLMRIED------------QI-----VEA----DALSWFKFSSIAWTHDSKGF 192 (732)
Q Consensus 134 ~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~------------g~-----~~~----~~~~~~~~~~~~WspDg~~l 192 (732)
....+|||||.++| .|+....|.|+|++. |. ++- +..+ ....+.|.|-..-|
T Consensus 115 cR~aafs~DG~lvA-----TGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~d--evn~l~FHPre~IL 187 (430)
T KOG0640|consen 115 CRAAAFSPDGSLVA-----TGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVD--EVNDLDFHPRETIL 187 (430)
T ss_pred eeeeeeCCCCcEEE-----ccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccC--cccceeecchhheE
Confidence 34677999999988 556668999999871 11 000 1111 13567788876544
Q ss_pred EEEEecCCCCCCCCCCCCcccCCcccEEEEEECCCCCC-CCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEE
Q 004766 193 FYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQS-EDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKV 271 (732)
Q Consensus 193 ~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~-~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l 271 (732)
+-.+ +...|.+.+...... ..-.++++.. ...++++.|.|.+|++.... .-+
T Consensus 188 iS~s-------------------rD~tvKlFDfsK~saKrA~K~~qd~~---~vrsiSfHPsGefllvgTdH-----p~~ 240 (430)
T KOG0640|consen 188 ISGS-------------------RDNTVKLFDFSKTSAKRAFKVFQDTE---PVRSISFHPSGEFLLVGTDH-----PTL 240 (430)
T ss_pred Eecc-------------------CCCeEEEEecccHHHHHHHHHhhccc---eeeeEeecCCCceEEEecCC-----Cce
Confidence 4332 344677777753321 1222444332 34578999999999876532 236
Q ss_pred EEEeCCCCCCCcccccccCCCCCcEEeeecccceEE-EEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCC
Q 004766 272 YYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYE-VIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERD 350 (732)
Q Consensus 272 ~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~ 350 (732)
.++|+++-++-+.. .|-... .+.... .+++.| .+|+....++ .|-.+|--++.+++.+-..-.+.
T Consensus 241 rlYdv~T~Qcfvsa-------nPd~qh---t~ai~~V~Ys~t~-~lYvTaSkDG---~IklwDGVS~rCv~t~~~AH~gs 306 (430)
T KOG0640|consen 241 RLYDVNTYQCFVSA-------NPDDQH---TGAITQVRYSSTG-SLYVTASKDG---AIKLWDGVSNRCVRTIGNAHGGS 306 (430)
T ss_pred eEEeccceeEeeec-------Cccccc---ccceeEEEecCCc-cEEEEeccCC---cEEeeccccHHHHHHHHhhcCCc
Confidence 66677663211000 000000 001111 256654 5787766554 46666644443333332222245
Q ss_pred ceeEEEEecCCEEEEEEecCCeeEEEEEeCCCCceeeecc
Q 004766 351 VLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLP 390 (732)
Q Consensus 351 ~l~~~~~~~~~~l~~~~~~~g~~~l~~~d~~~g~~~~~l~ 390 (732)
.+-+..++++++.++++..| +.+++|.+.+|..+.+-+
T Consensus 307 evcSa~Ftkn~kyiLsSG~D--S~vkLWEi~t~R~l~~Yt 344 (430)
T KOG0640|consen 307 EVCSAVFTKNGKYILSSGKD--STVKLWEISTGRMLKEYT 344 (430)
T ss_pred eeeeEEEccCCeEEeecCCc--ceeeeeeecCCceEEEEe
Confidence 67777788877777777766 678889988887655544
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.02 Score=64.15 Aligned_cols=237 Identities=12% Similarity=0.089 Sum_probs=138.0
Q ss_pred EEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCccc
Q 004766 134 LIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETD 213 (732)
Q Consensus 134 ~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~ 213 (732)
...+.|-|||+.|. +.+.+ ..|++|+...-+..|+++........+.+-++..|+.++
T Consensus 16 ~t~i~~d~~gefi~-tcgsd----g~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~~f~~~s----------------- 73 (933)
T KOG1274|consen 16 LTLICYDPDGEFIC-TCGSD----GDIRKWKTNSDEEEPETIDISGELVSSIACYSNHFLTGS----------------- 73 (933)
T ss_pred eEEEEEcCCCCEEE-EecCC----CceEEeecCCcccCCchhhccCceeEEEeecccceEEee-----------------
Confidence 45788999999554 33322 468888765543345554421112233345566555543
Q ss_pred CCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCCC
Q 004766 214 SNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLL 293 (732)
Q Consensus 214 ~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~ 293 (732)
....|.++.++++..+.+ +...+- .+..++++-+|+++++.+.+ ..|-++++.+..
T Consensus 74 --~~~tv~~y~fps~~~~~i-L~Rftl---p~r~~~v~g~g~~iaagsdD-----~~vK~~~~~D~s------------- 129 (933)
T KOG1274|consen 74 --EQNTVLRYKFPSGEEDTI-LARFTL---PIRDLAVSGSGKMIAAGSDD-----TAVKLLNLDDSS------------- 129 (933)
T ss_pred --ccceEEEeeCCCCCccce-eeeeec---cceEEEEecCCcEEEeecCc-----eeEEEEeccccc-------------
Confidence 234688999988876533 222211 13467899999999887643 447777776532
Q ss_pred CcEEeeecccceEE--EEEecCCeEEEEeCCCCCCceEEEEeCCCCC---CceEeccCCC---CCceeEEEEecC-CEEE
Q 004766 294 PFVKLIDGFDAQYE--VIANDDTVFTFLTNKDAPKYKIIRVDLKEPN---DWFEVIPEAE---RDVLESATAVNL-NQMI 364 (732)
Q Consensus 294 ~~~~l~~~~~~~~~--~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~---~~~~l~~~~~---~~~l~~~~~~~~-~~l~ 364 (732)
......+.+..+. .+.|.+..|+..+- +++|..+++.++. .+..+.+..+ ......++|.++ +.++
T Consensus 130 -~~~~lrgh~apVl~l~~~p~~~fLAvss~----dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la 204 (933)
T KOG1274|consen 130 -QEKVLRGHDAPVLQLSYDPKGNFLAVSSC----DGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLA 204 (933)
T ss_pred -hheeecccCCceeeeeEcCCCCEEEEEec----CceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEE
Confidence 1122233333332 36788877776543 4578899988775 2333333321 123456789885 5666
Q ss_pred EEEecCCeeEEEEEeCCCCceeeecccc--cceeeEeecccCCcEEEEEEecCCCCceEEEEECCC
Q 004766 365 VSYLSDVKYVLQIRDLKNGSLLHQLPIE--IGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKT 428 (732)
Q Consensus 365 ~~~~~~g~~~l~~~d~~~g~~~~~l~~~--~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~ 428 (732)
+...++ .|.+++.++.+....+... ...+..++++|.|.+++.+ ..-..+.+||..+
T Consensus 205 ~~~~d~---~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs----~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 205 VPPVDN---TVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAAS----TLDGQILVWNVDT 263 (933)
T ss_pred eeccCC---eEEEEccCCceeheeecccccccceEEEEEcCCCcEEeee----ccCCcEEEEeccc
Confidence 665554 5778887766554444322 2226678899999876533 2345677777764
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0076 Score=61.18 Aligned_cols=135 Identities=17% Similarity=0.082 Sum_probs=80.8
Q ss_pred CCCCeeEEEEEeCC--CCC-ceEEeCCCCcCCCCCEEEEeEEECCCCcEEEEEEeccCCceEEEEEEECC--------C-
Q 004766 100 GLQPQSVLYVQDSL--DAK-AKVLLDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIE--------D- 167 (732)
Q Consensus 100 ~~~~~~~l~~r~~~--~~~-~~~l~D~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~--------~- 167 (732)
++..+-+||..... ++. ..|.+ ...|+ .+...+..++|||+|..||-. .+..++.+|-.. +
T Consensus 33 G~D~~iriW~v~r~~~~~~~~~V~y-~s~Ls-~H~~aVN~vRf~p~gelLASg-----~D~g~v~lWk~~~~~~~~~d~e 105 (434)
T KOG1009|consen 33 GGDKDIRIWKVNRSEPGGGDMKVEY-LSSLS-RHTRAVNVVRFSPDGELLASG-----GDGGEVFLWKQGDVRIFDADTE 105 (434)
T ss_pred cCccceeeeeeeecCCCCCceeEEE-eeccc-CCcceeEEEEEcCCcCeeeec-----CCCceEEEEEecCcCCccccch
Confidence 33445567765422 221 22222 23343 466789999999999999833 333566666543 3
Q ss_pred ----Cc-e-ec--ccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCCcccEEEEEECCCCCCCCeEEEecC
Q 004766 168 ----QI-V-EA--DALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDP 239 (732)
Q Consensus 168 ----g~-~-~~--~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~ 239 (732)
.+ . +. ......+...++|+||+..+...+.+. .++.|++..++.. .+ ..
T Consensus 106 ~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dn-------------------s~~l~Dv~~G~l~--~~--~~ 162 (434)
T KOG1009|consen 106 ADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDN-------------------SVRLWDVHAGQLL--AI--LD 162 (434)
T ss_pred hhhCccceEEEEEecccccchhhhhccCCCceeeeeeccc-------------------eEEEEEeccceeE--ee--cc
Confidence 11 0 00 111112346799999999888876544 5788888877532 22 23
Q ss_pred CCCeeEEEeEEecCCcEEEEEEecC
Q 004766 240 EHPKYIFSGHVTEDGQYLVMCIEEN 264 (732)
Q Consensus 240 ~~~~~~~~~~~SpDg~~l~~~~~~~ 264 (732)
++..+...++|.|-+++++-.+.+.
T Consensus 163 dh~~yvqgvawDpl~qyv~s~s~dr 187 (434)
T KOG1009|consen 163 DHEHYVQGVAWDPLNQYVASKSSDR 187 (434)
T ss_pred ccccccceeecchhhhhhhhhccCc
Confidence 3445667899999999987665544
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.026 Score=53.34 Aligned_cols=240 Identities=15% Similarity=0.069 Sum_probs=132.6
Q ss_pred EEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecccc-cceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCc
Q 004766 133 ALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADAL-SWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTE 211 (732)
Q Consensus 133 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~-~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~ 211 (732)
.+..+++.-||+|.+-. |++ .+|++|+...|..+..-. .+-..-..+-+-|+..|+-.
T Consensus 19 aV~avryN~dGnY~ltc----Gsd-rtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~---------------- 77 (307)
T KOG0316|consen 19 AVRAVRYNVDGNYCLTC----GSD-RTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASC---------------- 77 (307)
T ss_pred ceEEEEEccCCCEEEEc----CCC-ceEEeecccccceeeeecCCCceeeeccccccccccccC----------------
Confidence 46788999999987643 555 689999999888664322 22223455666677777643
Q ss_pred ccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCC
Q 004766 212 TDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDG 291 (732)
Q Consensus 212 ~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 291 (732)
+....+++|++.|++... -|. .+...+..+.+..+..-++ +.+ ....+.++|-....
T Consensus 78 ---GgDk~v~vwDV~TGkv~R--r~r--gH~aqVNtV~fNeesSVv~-Sgs----fD~s~r~wDCRS~s----------- 134 (307)
T KOG0316|consen 78 ---GGDKAVQVWDVNTGKVDR--RFR--GHLAQVNTVRFNEESSVVA-SGS----FDSSVRLWDCRSRS----------- 134 (307)
T ss_pred ---CCCceEEEEEcccCeeee--ecc--cccceeeEEEecCcceEEE-ecc----ccceeEEEEcccCC-----------
Confidence 455679999999986432 122 2333445667766655443 322 23456677765421
Q ss_pred CCCcEEeeecccceEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecCCEEEEEEecCC
Q 004766 292 LLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDV 371 (732)
Q Consensus 292 ~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~~l~~~~~~~g 371 (732)
..|++.+-. ....+..+.-. ++.++.... .+.+-.+|+..+. +...--...+..+.+++++...+...-+
T Consensus 135 ~ePiQilde-a~D~V~Si~v~-~heIvaGS~---DGtvRtydiR~G~----l~sDy~g~pit~vs~s~d~nc~La~~l~- 204 (307)
T KOG0316|consen 135 FEPIQILDE-AKDGVSSIDVA-EHEIVAGSV---DGTVRTYDIRKGT----LSSDYFGHPITSVSFSKDGNCSLASSLD- 204 (307)
T ss_pred CCccchhhh-hcCceeEEEec-ccEEEeecc---CCcEEEEEeecce----eehhhcCCcceeEEecCCCCEEEEeecc-
Confidence 223333322 22223223222 334433332 3457777776664 2222224668889999876655555555
Q ss_pred eeEEEEEeCCCCceeeecccccceeeEeeccc-CCcEEEEEEecCCCCceEEEEECCCCC
Q 004766 372 KYVLQIRDLKNGSLLHQLPIEIGSVNAISARR-EDSVVFISFTSFLIPGIVYQCNLKTET 430 (732)
Q Consensus 372 ~~~l~~~d~~~g~~~~~l~~~~g~v~~~~~s~-d~~~l~~~~ss~~~p~~~y~~d~~~~~ 430 (732)
+.|+++|.++|+.++.-......-.-+.... .+.+.+++- ..-+.+|.||+...+
T Consensus 205 -stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sg---SEDG~Vy~wdLvd~~ 260 (307)
T KOG0316|consen 205 -STLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSG---SEDGKVYFWDLVDET 260 (307)
T ss_pred -ceeeecccchhHHHHHhcccccceeeeeeeecccceeEEec---cCCceEEEEEeccce
Confidence 5789999999987544432211111111111 122333332 234678888987653
|
|
| >PF10142 PhoPQ_related: PhoPQ-activated pathogenicity-related protein; InterPro: IPR009199 Proteins in this entry are believed to play a role in virulence/pathogenicity in Salmonella | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0028 Score=65.98 Aligned_cols=231 Identities=18% Similarity=0.168 Sum_probs=137.0
Q ss_pred EEEEEEcCCCCCCCCccEEEEEcCCCCc---cCCCCcChhHHHHH-HhcCcEEEEE-cccCCC-------C-C------c
Q 004766 466 PMFIVSKKNIKLDGSHPCLLYGYGGFNI---SVTPSFSVSRTILM-RHLGAVFCIA-NIRGGG-------E-Y------G 526 (732)
Q Consensus 466 ~~~~~~p~~~~~~~~~P~vv~~hG~~~~---~~~~~~~~~~~~~l-~~~G~~v~~~-~~rG~g-------~-~------g 526 (732)
.+.|+.|++. ..+...+|++-||... ...+.+.......+ ..-|-+|+.. +++... . . +
T Consensus 51 ~l~I~vP~~~--~~~~~all~i~gG~~~~~~~~~~~~~~~~~~~~A~~t~siv~~l~qvPNQpl~f~~d~~~r~ED~iIA 128 (367)
T PF10142_consen 51 WLTIYVPKND--KNPDTALLFITGGSNRNWPGPPPDFDDELLQMIARATGSIVAILYQVPNQPLTFDNDPKPRTEDAIIA 128 (367)
T ss_pred EEEEEECCCC--CCCceEEEEEECCcccCCCCCCCcchHHHHHHHHHhcCCEEEEeCcCCCCCeEeCCCCccccHHHHHH
Confidence 4567788872 3566789999998621 22223333333333 3345555543 333221 1 1 1
Q ss_pred hhHHhccc---ccCCc-----cHHHHHHHHHH-HHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEc-CCcc
Q 004766 527 EEWHKGGA---LAKKQ-----NCFDDFISASE-YLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAH-VGVM 596 (732)
Q Consensus 527 ~~~~~~~~---~~~~~-----~~~~D~~~~~~-~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~-~p~~ 596 (732)
..|..-.. ..+-. ...--.+++++ ++.+....+.++.+|.|.|==|..+..++. .+.+.+|++.. .+++
T Consensus 129 ytW~~fl~~~d~~w~l~~PMtka~vrAMD~vq~~~~~~~~~~i~~FvV~GaSKRGWTtWltaa-~D~RV~aivP~Vid~L 207 (367)
T PF10142_consen 129 YTWRKFLETGDPEWPLHLPMTKAAVRAMDAVQEFLKKKFGVNIEKFVVTGASKRGWTTWLTAA-VDPRVKAIVPIVIDVL 207 (367)
T ss_pred HHHHHHhccCCccchhhhhHHHHHHHHHHHHHHHHHhhcCCCccEEEEeCCchHhHHHHHhhc-cCcceeEEeeEEEccC
Confidence 22444322 11100 01112222333 334444567889999999999988877777 46788877644 3555
Q ss_pred ccccccc---CCCCCcccc---cc---CCC---CCHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCC
Q 004766 597 DMLRYHK---FTIGHAWVS---DF---GCS---EEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVV 664 (732)
Q Consensus 597 d~~~~~~---~~~~~~~~~---~~---g~p---~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~ 664 (732)
|+...+. -..|..|-. .| |-. ..++..+.+.-.+|+...++ ...|-||+.|.+|+...
T Consensus 208 N~~~~l~h~y~~yG~~ws~a~~dY~~~gi~~~l~tp~f~~L~~ivDP~~Y~~r----------L~~PK~ii~atgDeFf~ 277 (367)
T PF10142_consen 208 NMKANLEHQYRSYGGNWSFAFQDYYNEGITQQLDTPEFDKLMQIVDPYSYRDR----------LTMPKYIINATGDEFFV 277 (367)
T ss_pred CcHHHHHHHHHHhCCCCccchhhhhHhCchhhcCCHHHHHHHHhcCHHHHHHh----------cCccEEEEecCCCceec
Confidence 5543221 011212211 11 211 34444445566799988877 57899999999999999
Q ss_pred chHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeCCCCCCCCCchHHHHHHHHHHHHHHHHHhC
Q 004766 665 PLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLG 727 (732)
Q Consensus 665 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 727 (732)
|..+.-++.+|. | +..+++.|+++|+... .+....+..|+...+.
T Consensus 278 pD~~~~y~d~L~------------G-~K~lr~vPN~~H~~~~-----~~~~~~l~~f~~~~~~ 322 (367)
T PF10142_consen 278 PDSSNFYYDKLP------------G-EKYLRYVPNAGHSLIG-----SDVVQSLRAFYNRIQN 322 (367)
T ss_pred cCchHHHHhhCC------------C-CeeEEeCCCCCcccch-----HHHHHHHHHHHHHHHc
Confidence 999999999987 4 5789999999999875 2445567888887653
|
Salmonella typhi PqaA has been shown to be activated by PhoP/Q two-component regulatory system, which regulates many virulence genes []. It has been also shown to confer resistance to antimicrobial peptides (melittin) []. Members of this family are predicted to belong to the alpha/beta hydrolase domain superfamily. |
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0012 Score=62.37 Aligned_cols=222 Identities=12% Similarity=0.006 Sum_probs=123.5
Q ss_pred CCceEEEEEEECCCCceecccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCCcccEEEEEECCCCCCCCe
Q 004766 154 GSDWATIKLMRIEDQIVEADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDI 233 (732)
Q Consensus 154 G~e~~~i~v~dl~~g~~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~ 233 (732)
++..++-.|||.-+|..+-.....--....+|+.|.+.|+-..... -+.++++..+.+...
T Consensus 77 aaadftakvw~a~tgdelhsf~hkhivk~~af~~ds~~lltgg~ek-------------------llrvfdln~p~App~ 137 (334)
T KOG0278|consen 77 AAADFTAKVWDAVTGDELHSFEHKHIVKAVAFSQDSNYLLTGGQEK-------------------LLRVFDLNRPKAPPK 137 (334)
T ss_pred hcccchhhhhhhhhhhhhhhhhhhheeeeEEecccchhhhccchHH-------------------HhhhhhccCCCCCch
Confidence 3445788999998887653211111136789999999887643221 233344444332211
Q ss_pred EEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCCCCcEEeeecccceEEEEEecC
Q 004766 234 LCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDD 313 (732)
Q Consensus 234 ~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dg 313 (732)
+...+++-+..+-|-...+.|+-++.+ ..+.++|..++. ....|.........-+++||
T Consensus 138 ---E~~ghtg~Ir~v~wc~eD~~iLSSadd-----~tVRLWD~rTgt-------------~v~sL~~~s~VtSlEvs~dG 196 (334)
T KOG0278|consen 138 ---EISGHTGGIRTVLWCHEDKCILSSADD-----KTVRLWDHRTGT-------------EVQSLEFNSPVTSLEVSQDG 196 (334)
T ss_pred ---hhcCCCCcceeEEEeccCceEEeeccC-----CceEEEEeccCc-------------EEEEEecCCCCcceeeccCC
Confidence 111223334455565555665443222 347777877753 12233222222222367888
Q ss_pred CeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecCCEEEEEEecCCeeEEEEEeCCCCceeeec-ccc
Q 004766 314 TVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQL-PIE 392 (732)
Q Consensus 314 ~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~~l~~~~~~~g~~~l~~~d~~~g~~~~~l-~~~ 392 (732)
+.|.+. . ...|.-+|.++-...+. -.-...+++.++.++..+++...++ ..++.+|..+|+.+... ..+
T Consensus 197 ~ilTia-~----gssV~Fwdaksf~~lKs---~k~P~nV~SASL~P~k~~fVaGged--~~~~kfDy~TgeEi~~~nkgh 266 (334)
T KOG0278|consen 197 RILTIA-Y----GSSVKFWDAKSFGLLKS---YKMPCNVESASLHPKKEFFVAGGED--FKVYKFDYNTGEEIGSYNKGH 266 (334)
T ss_pred CEEEEe-c----CceeEEeccccccceee---ccCccccccccccCCCceEEecCcc--eEEEEEeccCCceeeecccCC
Confidence 765542 2 12466677665441111 1112457778888867788888777 57889999999875543 344
Q ss_pred cceeeEeecccCCcEEEEEEecCCCCceEEEEECCCC
Q 004766 393 IGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTE 429 (732)
Q Consensus 393 ~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~ 429 (732)
.|.|..+.++|||. ++ .|-..-+++..+.+..+
T Consensus 267 ~gpVhcVrFSPdGE-~y---AsGSEDGTirlWQt~~~ 299 (334)
T KOG0278|consen 267 FGPVHCVRFSPDGE-LY---ASGSEDGTIRLWQTTPG 299 (334)
T ss_pred CCceEEEEECCCCc-ee---eccCCCceEEEEEecCC
Confidence 77888899999986 32 23334455555554433
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00028 Score=71.20 Aligned_cols=195 Identities=12% Similarity=0.084 Sum_probs=113.4
Q ss_pred eeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEE
Q 004766 180 FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVM 259 (732)
Q Consensus 180 ~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~ 259 (732)
+..+.|+|+|++|+..+.-+ .+-+|+.-+-..+ ++.+.. +.-+..+.||++|.+++-
T Consensus 99 V~~v~WtPeGRRLltgs~SG-------------------EFtLWNg~~fnFE--tilQaH--Ds~Vr~m~ws~~g~wmiS 155 (464)
T KOG0284|consen 99 VNVVRWTPEGRRLLTGSQSG-------------------EFTLWNGTSFNFE--TILQAH--DSPVRTMKWSHNGTWMIS 155 (464)
T ss_pred eeeEEEcCCCceeEeecccc-------------------cEEEecCceeeHH--HHhhhh--cccceeEEEccCCCEEEE
Confidence 47799999999999876432 1233333111111 122222 234567899999999864
Q ss_pred EEecCCcceEEEEEEeCCCCCCCcccccccCCCCCcEEeeec--ccceEEEEEecCCeEEEEeCCCCCCceEEEEeCCCC
Q 004766 260 CIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDG--FDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEP 337 (732)
Q Consensus 260 ~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~ 337 (732)
... . .-|-+++..-.. +...... ....-..|||....|+-.+++ +.|-++|..-+
T Consensus 156 gD~--g---G~iKyWqpnmnn--------------Vk~~~ahh~eaIRdlafSpnDskF~t~SdD----g~ikiWdf~~~ 212 (464)
T KOG0284|consen 156 GDK--G---GMIKYWQPNMNN--------------VKIIQAHHAEAIRDLAFSPNDSKFLTCSDD----GTIKIWDFRMP 212 (464)
T ss_pred cCC--C---ceEEecccchhh--------------hHHhhHhhhhhhheeccCCCCceeEEecCC----CeEEEEeccCC
Confidence 322 1 123444432200 0000001 111112488865555543332 35666776555
Q ss_pred CCceEeccCCCCCceeEEEEecCCEEEEEEecCCeeEEEEEeCCCCceeeecccccceeeEeecccCCcEEEEEEecCCC
Q 004766 338 NDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLI 417 (732)
Q Consensus 338 ~~~~~l~~~~~~~~l~~~~~~~~~~l~~~~~~~g~~~l~~~d~~~g~~~~~l~~~~g~v~~~~~s~d~~~l~~~~ss~~~ 417 (732)
++-..|..+. ..+..+.|.+...++++..++. -|.+||..+|..+..+......|..+.++++++.|+ +.+- .
T Consensus 213 kee~vL~GHg--wdVksvdWHP~kgLiasgskDn--lVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Ll-t~sk-D- 285 (464)
T KOG0284|consen 213 KEERVLRGHG--WDVKSVDWHPTKGLIASGSKDN--LVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLL-TGSK-D- 285 (464)
T ss_pred chhheeccCC--CCcceeccCCccceeEEccCCc--eeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeE-EccC-C-
Confidence 4334454443 6788899998777888888885 789999999987666665667788888999997543 3333 2
Q ss_pred CceEEEEECCC
Q 004766 418 PGIVYQCNLKT 428 (732)
Q Consensus 418 p~~~y~~d~~~ 428 (732)
..+-.+|..+
T Consensus 286 -~~~kv~DiR~ 295 (464)
T KOG0284|consen 286 -QSCKVFDIRT 295 (464)
T ss_pred -ceEEEEehhH
Confidence 2556667654
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0014 Score=67.75 Aligned_cols=228 Identities=16% Similarity=0.088 Sum_probs=123.9
Q ss_pred EEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCce-ecc----cccceeeeeEEEEeCCcEEEEEEecCCCCCCCCC
Q 004766 133 ALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIV-EAD----ALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMD 207 (732)
Q Consensus 133 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~-~~~----~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~ 207 (732)
.+....++|||+.|.. |.+..++-||||..-.+ +.. ....+ ..++-|||.+ ++|+..-.
T Consensus 467 yiRSckL~pdgrtLiv-----GGeastlsiWDLAapTprikaeltssapaC--yALa~spDak-vcFsccsd-------- 530 (705)
T KOG0639|consen 467 YIRSCKLLPDGRTLIV-----GGEASTLSIWDLAAPTPRIKAELTSSAPAC--YALAISPDAK-VCFSCCSD-------- 530 (705)
T ss_pred ceeeeEecCCCceEEe-----ccccceeeeeeccCCCcchhhhcCCcchhh--hhhhcCCccc-eeeeeccC--------
Confidence 3678899999999873 45678999999986542 221 11223 5678899997 55554321
Q ss_pred CCCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCccccc
Q 004766 208 AGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFK 287 (732)
Q Consensus 208 ~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~ 287 (732)
..|.+|++... .+|-+...+..-...+.+|+||..|.-..- .+.+.-||+..+.
T Consensus 531 ----------GnI~vwDLhnq----~~VrqfqGhtDGascIdis~dGtklWTGGl-----DntvRcWDlregr------- 584 (705)
T KOG0639|consen 531 ----------GNIAVWDLHNQ----TLVRQFQGHTDGASCIDISKDGTKLWTGGL-----DNTVRCWDLREGR------- 584 (705)
T ss_pred ----------CcEEEEEcccc----eeeecccCCCCCceeEEecCCCceeecCCC-----ccceeehhhhhhh-------
Confidence 24788888643 244333333333457889999998853322 3457778887642
Q ss_pred ccCCCCCcEEee-ecccceEE--EEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecCCEEE
Q 004766 288 KRDGLLPFVKLI-DGFDAQYE--VIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMI 364 (732)
Q Consensus 288 ~~~~~~~~~~l~-~~~~~~~~--~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~~l~ 364 (732)
.+. .++...+. ..+|.++++++-- .+..+.+....++.. -.|-.++ ..+-++.+..-++.+
T Consensus 585 ---------qlqqhdF~SQIfSLg~cP~~dWlavGM----ens~vevlh~skp~k-yqlhlhe--ScVLSlKFa~cGkwf 648 (705)
T KOG0639|consen 585 ---------QLQQHDFSSQIFSLGYCPTGDWLAVGM----ENSNVEVLHTSKPEK-YQLHLHE--SCVLSLKFAYCGKWF 648 (705)
T ss_pred ---------hhhhhhhhhhheecccCCCccceeeec----ccCcEEEEecCCccc-eeecccc--cEEEEEEecccCcee
Confidence 111 12222221 2468888877532 234566666555542 2233332 345556665535666
Q ss_pred EEEecCCeeEEEEEeCCCCceeeecccccceeeEeecccCCcEEEEEEecCCCCceEEE
Q 004766 365 VSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQ 423 (732)
Q Consensus 365 ~~~~~~g~~~l~~~d~~~g~~~~~l~~~~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~ 423 (732)
++...|.. |-.|..--|..+-+.. +..+|.+-..|.|.+ ++++- |-..-.++|.
T Consensus 649 vStGkDnl--LnawrtPyGasiFqsk-E~SsVlsCDIS~ddk-yIVTG-SGdkkATVYe 702 (705)
T KOG0639|consen 649 VSTGKDNL--LNAWRTPYGASIFQSK-ESSSVLSCDISFDDK-YIVTG-SGDKKATVYE 702 (705)
T ss_pred eecCchhh--hhhccCccccceeecc-ccCcceeeeeccCce-EEEec-CCCcceEEEE
Confidence 66666643 3334433354322222 133444445566655 33333 3344455554
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0035 Score=63.69 Aligned_cols=213 Identities=15% Similarity=0.181 Sum_probs=111.8
Q ss_pred EeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecc-cccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCccc
Q 004766 135 IKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEAD-ALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETD 213 (732)
Q Consensus 135 ~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~-~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~ 213 (732)
..+++|.|||++.+. +..- ...+-|+|++.++.+.+ ...+|. .-+-|.++ .|+-.+.++
T Consensus 98 ~~~~ls~dgk~~~V~-N~TP--a~SVtVVDl~~~kvv~ei~~PGC~-~iyP~~~~--~F~~lC~DG-------------- 157 (342)
T PF06433_consen 98 NMFALSADGKFLYVQ-NFTP--ATSVTVVDLAAKKVVGEIDTPGCW-LIYPSGNR--GFSMLCGDG-------------- 157 (342)
T ss_dssp GGEEE-TTSSEEEEE-EESS--SEEEEEEETTTTEEEEEEEGTSEE-EEEEEETT--EEEEEETTS--------------
T ss_pred cceEEccCCcEEEEE-ccCC--CCeEEEEECCCCceeeeecCCCEE-EEEecCCC--ceEEEecCC--------------
Confidence 357899999987655 3332 36899999999987653 345552 33344433 344444332
Q ss_pred CCcccEEEEEECCCCCCCC---eEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccC
Q 004766 214 SNLYHEFYYHFLGTKQSED---ILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRD 290 (732)
Q Consensus 214 ~~~~~~v~~~~lgt~~~~~---~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~ 290 (732)
.+....++...... ..+|...+++ .+..+.++.++.+++|.+.. ..+|-+|+.+.....
T Consensus 158 -----sl~~v~Ld~~Gk~~~~~t~~F~~~~dp-~f~~~~~~~~~~~~~F~Sy~-----G~v~~~dlsg~~~~~------- 219 (342)
T PF06433_consen 158 -----SLLTVTLDADGKEAQKSTKVFDPDDDP-LFEHPAYSRDGGRLYFVSYE-----GNVYSADLSGDSAKF------- 219 (342)
T ss_dssp -----CEEEEEETSTSSEEEEEEEESSTTTS--B-S--EEETTTTEEEEEBTT-----SEEEEEEETTSSEEE-------
T ss_pred -----ceEEEEECCCCCEeEeeccccCCCCcc-cccccceECCCCeEEEEecC-----CEEEEEeccCCcccc-------
Confidence 23334444222111 1233332323 34466778777777776543 458888887632110
Q ss_pred CCCCcEEeeec-ccceE-------EEEEecCCeEEEEeCCC------CCCceEEEEeCCCCCCceEeccCCCCCceeEEE
Q 004766 291 GLLPFVKLIDG-FDAQY-------EVIANDDTVFTFLTNKD------APKYKIIRVDLKEPNDWFEVIPEAERDVLESAT 356 (732)
Q Consensus 291 ~~~~~~~l~~~-~~~~~-------~~~s~dg~~l~~~s~~~------~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~ 356 (732)
..+|..++.. ....+ ..+.+..++||++.+.+ .+...||.+|+++++...++ +-. ..+.++.
T Consensus 220 -~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri-~l~--~~~~Si~ 295 (342)
T PF06433_consen 220 -GKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARI-PLE--HPIDSIA 295 (342)
T ss_dssp -EEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEE-EEE--EEESEEE
T ss_pred -cCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEE-eCC--CccceEE
Confidence 0112211111 01111 23555677888877532 23457999999998733333 211 3355788
Q ss_pred EecCCE-EEEEEecCCeeEEEEEeCCCCceeeecc
Q 004766 357 AVNLNQ-MIVSYLSDVKYVLQIRDLKNGSLLHQLP 390 (732)
Q Consensus 357 ~~~~~~-l~~~~~~~g~~~l~~~d~~~g~~~~~l~ 390 (732)
++.++. +++.... +...|+++|..+|+.++.+.
T Consensus 296 Vsqd~~P~L~~~~~-~~~~l~v~D~~tGk~~~~~~ 329 (342)
T PF06433_consen 296 VSQDDKPLLYALSA-GDGTLDVYDAATGKLVRSIE 329 (342)
T ss_dssp EESSSS-EEEEEET-TTTEEEEEETTT--EEEEE-
T ss_pred EccCCCcEEEEEcC-CCCeEEEEeCcCCcEEeehh
Confidence 887544 4444333 23579999999998876665
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.033 Score=56.02 Aligned_cols=231 Identities=10% Similarity=-0.012 Sum_probs=114.3
Q ss_pred CCEEEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCc-eecc-cccceeeeeEEEEeCCcEEEEEEecCCCCCCCCC
Q 004766 130 GTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQI-VEAD-ALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMD 207 (732)
Q Consensus 130 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~-~~~~-~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~ 207 (732)
+....+.-.|||||++|.-+.+.-.+.+..|-|||++.+- .+.+ ...+.....+.|.|||++|++.- -....-.+.+
T Consensus 49 gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVAN-GGI~Thpd~G 127 (305)
T PF07433_consen 49 GRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVAN-GGIETHPDSG 127 (305)
T ss_pred CCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEc-CCCccCcccC
Confidence 4444567889999998876665555556799999998443 3322 22333457899999999998763 1111001111
Q ss_pred CCCcc-cCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcc--eEEEEEEeCCCCCCCcc
Q 004766 208 AGTET-DSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDP--VNKVYYCDLSALPEGLE 284 (732)
Q Consensus 208 ~~~~~-~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~--~~~l~~~d~~~~~~~~~ 284 (732)
..++. +.-.++ |-+.+..++.--++..+...++..-+..+++++||.-++-....+... ..-+.+.+... . +.
T Consensus 128 R~kLNl~tM~ps-L~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~-~--~~ 203 (305)
T PF07433_consen 128 RAKLNLDTMQPS-LVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG-A--LR 203 (305)
T ss_pred ceecChhhcCCc-eEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCC-c--ce
Confidence 11111 111233 445555554322211111112222345788999998776655544311 12233333221 0 00
Q ss_pred cccccCCCCCcEEeeecccceEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecCCEEE
Q 004766 285 GFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMI 364 (732)
Q Consensus 285 ~~~~~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~~l~ 364 (732)
.+.. +........++-.++ .++.+|+.+++.+-+++ .+..+|.+++. +...++- ....++...+ +.++
T Consensus 204 ~~~~---p~~~~~~l~~Y~gSI-a~~~~g~~ia~tsPrGg---~~~~~d~~tg~-~~~~~~l---~D~cGva~~~-~~f~ 271 (305)
T PF07433_consen 204 LLPA---PEEQWRRLNGYIGSI-AADRDGRLIAVTSPRGG---RVAVWDAATGR-LLGSVPL---PDACGVAPTD-DGFL 271 (305)
T ss_pred eccC---ChHHHHhhCCceEEE-EEeCCCCEEEEECCCCC---EEEEEECCCCC-Eeecccc---CceeeeeecC-CceE
Confidence 0000 000001112232233 36778888887776643 57788888876 3333332 2244566555 3343
Q ss_pred EEEecCCeeEEEEEeC
Q 004766 365 VSYLSDVKYVLQIRDL 380 (732)
Q Consensus 365 ~~~~~~g~~~l~~~d~ 380 (732)
+++ |...+...+.
T Consensus 272 ~ss---G~G~~~~~~~ 284 (305)
T PF07433_consen 272 VSS---GQGQLIRLSP 284 (305)
T ss_pred EeC---CCccEEEccC
Confidence 332 3345555543
|
|
| >PF05577 Peptidase_S28: Serine carboxypeptidase S28; InterPro: IPR008758 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00021 Score=78.20 Aligned_cols=116 Identities=19% Similarity=0.116 Sum_probs=70.4
Q ss_pred ccEEEEEcCCCCccCC-CCcChhHHHHHHhcCcEEEEEcccCCCCCch---hHHhcccccCCccHHHHHHHHHHHHHHcC
Q 004766 481 HPCLLYGYGGFNISVT-PSFSVSRTILMRHLGAVFCIANIRGGGEYGE---EWHKGGALAKKQNCFDDFISASEYLISAG 556 (732)
Q Consensus 481 ~P~vv~~hG~~~~~~~-~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~---~~~~~~~~~~~~~~~~D~~~~~~~l~~~~ 556 (732)
.|++|++-|- +.... ......+..+..+.|..+++..+|=-|+.-. .-.+.-+...-...+.|+...++++..+-
T Consensus 29 gpifl~~ggE-~~~~~~~~~~~~~~~lA~~~~a~~v~lEHRyYG~S~P~~~~s~~nL~yLt~~QALaD~a~F~~~~~~~~ 107 (434)
T PF05577_consen 29 GPIFLYIGGE-GPIEPFWINNGFMWELAKEFGALVVALEHRYYGKSQPFGDLSTENLRYLTSEQALADLAYFIRYVKKKY 107 (434)
T ss_dssp SEEEEEE--S-S-HHHHHHH-HHHHHHHHHHTEEEEEE--TTSTTB-TTGGGGGSTTTC-SHHHHHHHHHHHHHHHHHHT
T ss_pred CCEEEEECCC-CccchhhhcCChHHHHHHHcCCcEEEeehhhhcCCCCccccchhhHHhcCHHHHHHHHHHHHHHHHHhh
Confidence 8999998443 32111 1112234566777899999999997443211 11111122233356889999999988653
Q ss_pred -CCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCccc
Q 004766 557 -YTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMD 597 (732)
Q Consensus 557 -~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d 597 (732)
..+..+++++|+|+||.|++++-.++|++|.|+++.++++.
T Consensus 108 ~~~~~~pwI~~GgSY~G~Laaw~r~kyP~~~~ga~ASSapv~ 149 (434)
T PF05577_consen 108 NTAPNSPWIVFGGSYGGALAAWFRLKYPHLFDGAWASSAPVQ 149 (434)
T ss_dssp TTGCC--EEEEEETHHHHHHHHHHHH-TTT-SEEEEET--CC
T ss_pred cCCCCCCEEEECCcchhHHHHHHHhhCCCeeEEEEeccceee
Confidence 33556999999999999999999999999999998876553
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S28 (clan SC). The predicted active site residues for members of this family and family S10 occur in the same order in the sequence: S, D, H. These serine proteases include several eukaryotic enzymes such as lysosomal Pro-X carboxypeptidase, dipeptidyl-peptidase II, and thymus-specific serine peptidase [, , , ].; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3N2Z_B 3JYH_A 3N0T_C. |
| >KOG2551 consensus Phospholipase/carboxyhydrolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0028 Score=59.64 Aligned_cols=184 Identities=18% Similarity=0.139 Sum_probs=109.4
Q ss_pred CccEEEEEcCCCCccCCCCcCh---hHHHHHHhcCcEEEEEcccC------C----C----------CCc-hhHHhccc-
Q 004766 480 SHPCLLYGYGGFNISVTPSFSV---SRTILMRHLGAVFCIANIRG------G----G----------EYG-EEWHKGGA- 534 (732)
Q Consensus 480 ~~P~vv~~hG~~~~~~~~~~~~---~~~~~l~~~G~~v~~~~~rG------~----g----------~~g-~~~~~~~~- 534 (732)
+.|-||.+||.-.+ ...|+. .+...|.+. +-++.++.+- . + +.. ..|.....
T Consensus 4 ~k~rvLcLHGfrQs--g~~F~~Ktg~~rK~l~k~-~el~f~~aPh~~~~~~~~~~~~~~~~~a~~~~~~~~~~Wf~~n~~ 80 (230)
T KOG2551|consen 4 KKLRVLCLHGFRQS--GKVFSEKTGSLRKLLKKL-AELVFPDAPHELPKADLPDSEREKKFDAPPDVEQNRYGWFSNNEA 80 (230)
T ss_pred CCceEEEecchhhc--cHHHHHHhhhHHHHHHhh-heEEecCCCccCCcccCCcccccccccCCcccccchhhhhccccc
Confidence 45789999997554 345543 345556644 6666666551 0 1 111 34554433
Q ss_pred ccCCccHHHH-HHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhC--CC------eeeEEEEcCCcccccccccCC
Q 004766 535 LAKKQNCFDD-FISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQR--PD------LFGCALAHVGVMDMLRYHKFT 605 (732)
Q Consensus 535 ~~~~~~~~~D-~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~--p~------~f~a~v~~~p~~d~~~~~~~~ 605 (732)
.......++- +....+|++++|--| ||.|+|.|..|++.+++.. .. -|+-+|..+|+.-.
T Consensus 81 ~~~~~~~~eesl~yl~~~i~enGPFD----GllGFSQGA~laa~l~~~~~~~~~~~~~P~~kF~v~~SGf~~~------- 149 (230)
T KOG2551|consen 81 SFTEYFGFEESLEYLEDYIKENGPFD----GLLGFSQGAALAALLAGLGQKGLPYVKQPPFKFAVFISGFKFP------- 149 (230)
T ss_pred ccccccChHHHHHHHHHHHHHhCCCc----cccccchhHHHHHHhhcccccCCcccCCCCeEEEEEEecCCCC-------
Confidence 2223333555 444566788888877 8999999999999998821 10 24555555554311
Q ss_pred CCCccccccCCCCCHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhcCCCCC
Q 004766 606 IGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLEN 685 (732)
Q Consensus 606 ~~~~~~~~~g~p~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~ 685 (732)
+.+.+.. .+. . .+.+|.|-+-|+.|..||...+..+++....+
T Consensus 150 ---------~~~~~~~------~~~-----~----------~i~~PSLHi~G~~D~iv~~~~s~~L~~~~~~a------- 192 (230)
T KOG2551|consen 150 ---------SKKLDES------AYK-----R----------PLSTPSLHIFGETDTIVPSERSEQLAESFKDA------- 192 (230)
T ss_pred ---------cchhhhh------hhc-----c----------CCCCCeeEEecccceeecchHHHHHHHhcCCC-------
Confidence 0001100 011 1 27889999999999999999999998876531
Q ss_pred CCCCCCEEEEEeCCCCCCCCCchHHHHHHHHHHHHHHHHHh
Q 004766 686 SPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKML 726 (732)
Q Consensus 686 ~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l 726 (732)
. ++.-.+||.+-.... ....+.+|+...+
T Consensus 193 -------~-vl~HpggH~VP~~~~----~~~~i~~fi~~~~ 221 (230)
T KOG2551|consen 193 -------T-VLEHPGGHIVPNKAK----YKEKIADFIQSFL 221 (230)
T ss_pred -------e-EEecCCCccCCCchH----HHHHHHHHHHHHH
Confidence 3 333467999866443 2234555665544
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00067 Score=71.99 Aligned_cols=120 Identities=11% Similarity=0.030 Sum_probs=74.6
Q ss_pred CCEEEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCcee---cccccceeeeeEEEEeCCcEEEEEEecCCCCCCCC
Q 004766 130 GTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVE---ADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDM 206 (732)
Q Consensus 130 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~---~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~ 206 (732)
+.-.|..++|.|=-.-++.+. +...+|.+||+.++... ....+ .+.+++|||||+.++-+..+.
T Consensus 676 h~eKI~slRfHPLAadvLa~a----syd~Ti~lWDl~~~~~~~~l~gHtd--qIf~~AWSpdGr~~AtVcKDg------- 742 (1012)
T KOG1445|consen 676 HGEKITSLRFHPLAADVLAVA----SYDSTIELWDLANAKLYSRLVGHTD--QIFGIAWSPDGRRIATVCKDG------- 742 (1012)
T ss_pred ccceEEEEEecchhhhHhhhh----hccceeeeeehhhhhhhheeccCcC--ceeEEEECCCCcceeeeecCc-------
Confidence 445677888988443322222 33479999999988732 22222 247899999999999987654
Q ss_pred CCCCcccCCcccEEEEEECCCCCCCCeEEEecCCCC-eeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCC
Q 004766 207 DAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHP-KYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSA 278 (732)
Q Consensus 207 ~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~-~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~ 278 (732)
+|++|+-.+++ ..|+++..-- .....+.|-=||++|+++.-+..+ ..+|-+++.++
T Consensus 743 ------------~~rVy~Prs~e---~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~S-eRQv~~Y~Aq~ 799 (1012)
T KOG1445|consen 743 ------------TLRVYEPRSRE---QPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSS-ERQVQMYDAQT 799 (1012)
T ss_pred ------------eEEEeCCCCCC---CccccCCCCccCcceeEEEEecCcEEEEecccccc-hhhhhhhhhhh
Confidence 46666544332 2455443210 112357788899999887755442 45566777655
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.02 Score=61.85 Aligned_cols=231 Identities=12% Similarity=0.119 Sum_probs=126.6
Q ss_pred cccEEEEEECCCCCCC------CeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCccccccc
Q 004766 216 LYHEFYYHFLGTKQSE------DILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKR 289 (732)
Q Consensus 216 ~~~~v~~~~lgt~~~~------~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~ 289 (732)
..+.+..|.+|+...+ .++-+..++ ...+...+.||||.+|++..-. ...||.+..+. .
T Consensus 351 ~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~-~~nIs~~aiSPdg~~Ia~st~~----~~~iy~L~~~~-~--------- 415 (691)
T KOG2048|consen 351 KAHGVDLWRLGSVILQGEYNYIHLLKLFTKE-KENISCAAISPDGNLIAISTVS----RTKIYRLQPDP-N--------- 415 (691)
T ss_pred ccccccceeccCcccccccChhhheeeecCC-ccceeeeccCCCCCEEEEeecc----ceEEEEeccCc-c---------
Confidence 3445667778876221 222222222 3456678899999999987632 24455554332 1
Q ss_pred CCCCCcEEeeec----ccceEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCC--CceEeccCCCCCceeEEEEecC-CE
Q 004766 290 DGLLPFVKLIDG----FDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPN--DWFEVIPEAERDVLESATAVNL-NQ 362 (732)
Q Consensus 290 ~~~~~~~~l~~~----~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~--~~~~l~~~~~~~~l~~~~~~~~-~~ 362 (732)
...+.+-.. .+.....++-|++.+++.+.. .+.|..++++++. ....+.+......+..+..+++ ++
T Consensus 416 ---vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~---~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~y 489 (691)
T KOG2048|consen 416 ---VKVINVDDVPLALLDASAISFTIDKNKLFLVSKN---IFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNY 489 (691)
T ss_pred ---eeEEEeccchhhhccceeeEEEecCceEEEEecc---cceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCE
Confidence 001111110 111223477788888877732 4568888887765 2223333322345666677764 56
Q ss_pred EEEEEecCCeeEEEEEeCCCCceeeecc-cccceeeEeecc-cCCcEEEEEEecCCCCceEEEEECCCCCCceEEEEeec
Q 004766 363 MIVSYLSDVKYVLQIRDLKNGSLLHQLP-IEIGSVNAISAR-REDSVVFISFTSFLIPGIVYQCNLKTETPEMKIFRETI 440 (732)
Q Consensus 363 l~~~~~~~g~~~l~~~d~~~g~~~~~l~-~~~g~v~~~~~s-~d~~~l~~~~ss~~~p~~~y~~d~~~~~~~~~~l~~~~ 440 (732)
+.+.. +.+.|++|++++++. +.+. .....+..+.++ ++.+.+.+.+++ .++|.+|+...+ .+.+..
T Consensus 490 iaa~~---t~g~I~v~nl~~~~~-~~l~~rln~~vTa~~~~~~~~~~lvvats~----nQv~efdi~~~~--l~~ws~-- 557 (691)
T KOG2048|consen 490 IAAIS---TRGQIFVYNLETLES-HLLKVRLNIDVTAAAFSPFVRNRLVVATSN----NQVFEFDIEARN--LTRWSK-- 557 (691)
T ss_pred EEEEe---ccceEEEEEccccee-ecchhccCcceeeeeccccccCcEEEEecC----CeEEEEecchhh--hhhhhh--
Confidence 66655 345899999986664 4443 233445455555 455677777665 589999985442 222221
Q ss_pred CCCCCCCCceEEEEEEEccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCcc
Q 004766 441 IPGFDRSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNIS 494 (732)
Q Consensus 441 ~~~~~~~~~~~~~~~~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~ 494 (732)
.+... ....+.+..+ .+++..+-| ++|..+.+|++...+
T Consensus 558 ---~nt~n---lpk~~~~l~~--~~~gisfd~-------~n~s~~~~~~a~w~~ 596 (691)
T KOG2048|consen 558 ---NNTRN---LPKEPKTLIP--GIPGISFDP-------KNSSRFIVYDAHWSC 596 (691)
T ss_pred ---ccccc---cccChhhcCC--CCceEEeCC-------CCccEEEEEcCcEEE
Confidence 01111 1122334343 566666643 568889999986654
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0087 Score=60.04 Aligned_cols=120 Identities=13% Similarity=0.055 Sum_probs=70.0
Q ss_pred EEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcc
Q 004766 133 ALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTET 212 (732)
Q Consensus 133 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~ 212 (732)
.+..+++||||+.+|++.... ....|++....+...... .+.....++|++||. +++.....
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~--~~~~L~~~~~~~~~~~~~--~g~~l~~PS~d~~g~-~W~v~~~~------------- 86 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGD--GGRSLYVGPAGGPVRPVL--TGGSLTRPSWDPDGW-VWTVDDGS------------- 86 (253)
T ss_pred cccceEECCCCCeEEEEEEcC--CCCEEEEEcCCCcceeec--cCCccccccccCCCC-EEEEEcCC-------------
Confidence 456899999999999998333 336899887654433222 222458899999975 44443211
Q ss_pred cCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCC
Q 004766 213 DSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLS 277 (732)
Q Consensus 213 ~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~ 277 (732)
....+.+ +..++....+.+ ..+....-+..+.+||||.++++...... ..+|++.-+.
T Consensus 87 ---~~~~~~~-~~~~g~~~~~~v-~~~~~~~~I~~l~vSpDG~RvA~v~~~~~--~~~v~va~V~ 144 (253)
T PF10647_consen 87 ---GGVRVVR-DSASGTGEPVEV-DWPGLRGRITALRVSPDGTRVAVVVEDGG--GGRVYVAGVV 144 (253)
T ss_pred ---CceEEEE-ecCCCcceeEEe-cccccCCceEEEEECCCCcEEEEEEecCC--CCeEEEEEEE
Confidence 1112222 212222221111 22211114568999999999999987655 3567776543
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >COG3545 Predicted esterase of the alpha/beta hydrolase fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0019 Score=58.54 Aligned_cols=122 Identities=16% Similarity=0.066 Sum_probs=81.7
Q ss_pred ccCCccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCcccccccccCCCCCcccccc
Q 004766 535 LAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHAWVSDF 614 (732)
Q Consensus 535 ~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~~~~~~~ 614 (732)
.++....++|-++.++.-+..- ++-+.+++||.|+.+++..+.+.-...+++++.+|+- +-+-. .+
T Consensus 36 ~~w~~P~~~dWi~~l~~~v~a~---~~~~vlVAHSLGc~~v~h~~~~~~~~V~GalLVAppd-~~~~~------~~---- 101 (181)
T COG3545 36 DDWEAPVLDDWIARLEKEVNAA---EGPVVLVAHSLGCATVAHWAEHIQRQVAGALLVAPPD-VSRPE------IR---- 101 (181)
T ss_pred CCCCCCCHHHHHHHHHHHHhcc---CCCeEEEEecccHHHHHHHHHhhhhccceEEEecCCC-ccccc------cc----
Confidence 3455667888888877665542 4559999999999999999987555677777776642 11100 00
Q ss_pred CCCCCHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhcCCCCCCCCCCCEEE
Q 004766 615 GCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIG 694 (732)
Q Consensus 615 g~p~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 694 (732)
+ ..+..++|+...+. -=|.+++++.||+.|+++++..+++++-. .|
T Consensus 102 -----~---~~~~tf~~~p~~~l-----------pfps~vvaSrnDp~~~~~~a~~~a~~wgs---------------~l 147 (181)
T COG3545 102 -----P---KHLMTFDPIPREPL-----------PFPSVVVASRNDPYVSYEHAEDLANAWGS---------------AL 147 (181)
T ss_pred -----h---hhccccCCCccccC-----------CCceeEEEecCCCCCCHHHHHHHHHhccH---------------hh
Confidence 0 11233445433322 22788999999999999999999988764 44
Q ss_pred EEeCCCCCCC
Q 004766 695 RIERKAGHGV 704 (732)
Q Consensus 695 ~~~~~~gH~~ 704 (732)
+....+||..
T Consensus 148 v~~g~~GHiN 157 (181)
T COG3545 148 VDVGEGGHIN 157 (181)
T ss_pred eecccccccc
Confidence 5556778864
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.12 Score=56.12 Aligned_cols=240 Identities=15% Similarity=0.128 Sum_probs=133.5
Q ss_pred EEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecccc---cceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCC
Q 004766 134 LIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADAL---SWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGT 210 (732)
Q Consensus 134 ~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~---~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~ 210 (732)
+..+++|.+.+.||.+.. ...|-+|++..+-.+...+ ++....+++|+ +|.+|+-+.
T Consensus 28 I~slA~s~kS~~lAvsRt-----~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g-------------- 87 (691)
T KOG2048|consen 28 IVSLAYSHKSNQLAVSRT-----DGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSG-------------- 87 (691)
T ss_pred eEEEEEeccCCceeeecc-----CCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeec--------------
Confidence 447889999999997753 2478889998765332222 22235789999 555676542
Q ss_pred cccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccC
Q 004766 211 ETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRD 290 (732)
Q Consensus 211 ~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~ 290 (732)
....|-.||+.+... ++.-....+-+.+++.+|.+..+++...++ -++..+...+.
T Consensus 88 -----~sg~i~EwDl~~lk~----~~~~d~~gg~IWsiai~p~~~~l~IgcddG-----vl~~~s~~p~~---------- 143 (691)
T KOG2048|consen 88 -----LSGSITEWDLHTLKQ----KYNIDSNGGAIWSIAINPENTILAIGCDDG-----VLYDFSIGPDK---------- 143 (691)
T ss_pred -----CCceEEEEecccCce----eEEecCCCcceeEEEeCCccceEEeecCCc-----eEEEEecCCce----------
Confidence 334678888876542 222222234456788889998887765332 35555443311
Q ss_pred CCCCcEEeeecccceE-E-EEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEec------cCCCCCceeEEEEecCCE
Q 004766 291 GLLPFVKLIDGFDAQY-E-VIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVI------PEAERDVLESATAVNLNQ 362 (732)
Q Consensus 291 ~~~~~~~l~~~~~~~~-~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~------~~~~~~~l~~~~~~~~~~ 362 (732)
.........-.... . .|.+++.+++.-+ ..+.|-.+|+..+.....+. ...+...+=++.+.. +.
T Consensus 144 --I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs----~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lr-d~ 216 (691)
T KOG2048|consen 144 --ITYKRSLMRQKSRVLSLSWNPTGTKIAGGS----IDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLR-DS 216 (691)
T ss_pred --EEEEeecccccceEEEEEecCCccEEEecc----cCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEee-cC
Confidence 01111111111111 1 4778887776422 24567778887765222110 111112222333334 33
Q ss_pred EEEEEecCCeeEEEEEeCCCCceeeecccccceeeEeecccCCcEEEEEEecCCCCceEEEEECCCCC
Q 004766 363 MIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 430 (732)
Q Consensus 363 l~~~~~~~g~~~l~~~d~~~g~~~~~l~~~~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~~ 430 (732)
.++..... +.+..||.+.|...+........|-.++.+.++++++.+- . -+.+..|...+.+
T Consensus 217 tI~sgDS~--G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaG---v-d~~ii~~~~~~~~ 278 (691)
T KOG2048|consen 217 TIASGDSA--GTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAG---V-DPKIIQYSLTTNK 278 (691)
T ss_pred cEEEecCC--ceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEcc---C-CCceEEEEecCCc
Confidence 44454433 5788999988876555555566677777777777765432 2 2456677666553
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.13 Score=62.42 Aligned_cols=255 Identities=7% Similarity=-0.016 Sum_probs=129.6
Q ss_pred EeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecccc---c--------ce---eeeeEEEEeCCcEEEEEEecCC
Q 004766 135 IKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADAL---S--------WF---KFSSIAWTHDSKGFFYSRYPAP 200 (732)
Q Consensus 135 ~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~---~--------~~---~~~~~~WspDg~~l~y~~~~~~ 200 (732)
+++.+++++..|. +.+.+. ..|+++|+.+........ . .+ ...++++.+++..||++-
T Consensus 571 ~gvavd~~~g~ly-VaDs~n---~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaD---- 642 (1057)
T PLN02919 571 GKLAIDLLNNRLF-ISDSNH---NRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVAD---- 642 (1057)
T ss_pred ceEEEECCCCeEE-EEECCC---CeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEe----
Confidence 4678888766554 445433 478899986543221110 0 00 136789999887776652
Q ss_pred CCCCCCCCCCcccCCcccEEEEEECCCCCCCCeEEEe---------cCC----C-CeeEEEeEEecCCcEEEEEEecCCc
Q 004766 201 KEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWK---------DPE----H-PKYIFSGHVTEDGQYLVMCIEENCD 266 (732)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~---------~~~----~-~~~~~~~~~SpDg~~l~~~~~~~~~ 266 (732)
...+.|.++++.++... .+.. +.. . -..-.+++++|++..|++....
T Consensus 643 --------------t~n~~Ir~id~~~~~V~--tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~--- 703 (1057)
T PLN02919 643 --------------TENHALREIDFVNETVR--TLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAG--- 703 (1057)
T ss_pred --------------CCCceEEEEecCCCEEE--EEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECC---
Confidence 12345666665443211 1110 000 0 0011367899977777665422
Q ss_pred ceEEEEEEeCCCCCCCcccccccCCCCCc---EEeeeccc-ceEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceE
Q 004766 267 PVNKVYYCDLSALPEGLEGFKKRDGLLPF---VKLIDGFD-AQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFE 342 (732)
Q Consensus 267 ~~~~l~~~d~~~~~~~~~~~~~~~~~~~~---~~l~~~~~-~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~ 342 (732)
+..|++++..++... .+..++..... ......+. ..-..++|+|+.||+... .+.+|.++|++++. ...
T Consensus 704 -~~~I~v~d~~~g~v~--~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs---~n~~Irv~D~~tg~-~~~ 776 (1057)
T PLN02919 704 -QHQIWEYNISDGVTR--VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADS---ESSSIRALDLKTGG-SRL 776 (1057)
T ss_pred -CCeEEEEECCCCeEE--EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEEC---CCCeEEEEECCCCc-EEE
Confidence 356888887653210 00000000000 00000000 111247899988886433 24579999988765 122
Q ss_pred eccCCC--------------------CCceeEEEEecCCEEEEEEecCCeeEEEEEeCCCCceeeeccc-c-c-------
Q 004766 343 VIPEAE--------------------RDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPI-E-I------- 393 (732)
Q Consensus 343 l~~~~~--------------------~~~l~~~~~~~~~~l~~~~~~~g~~~l~~~d~~~g~~~~~l~~-~-~------- 393 (732)
+..... -..-.++.+.+++.+|++...+ .+|.++|.+++.. ..+.. . .
T Consensus 777 ~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N--~rIrviD~~tg~v-~tiaG~G~~G~~dG~~ 853 (1057)
T PLN02919 777 LAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYN--HKIKKLDPATKRV-TTLAGTGKAGFKDGKA 853 (1057)
T ss_pred EEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCC--CEEEEEECCCCeE-EEEeccCCcCCCCCcc
Confidence 211000 0012356677666787776555 6899999876654 33221 0 0
Q ss_pred -----ceeeEeecccCCcEEEEEEecCCCCceEEEEECCCCC
Q 004766 394 -----GSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 430 (732)
Q Consensus 394 -----g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~~ 430 (732)
....++..+++|. ++++- ..-.++..+|+.+++
T Consensus 854 ~~a~l~~P~GIavd~dG~-lyVaD---t~Nn~Irvid~~~~~ 891 (1057)
T PLN02919 854 LKAQLSEPAGLALGENGR-LFVAD---TNNSLIRYLDLNKGE 891 (1057)
T ss_pred cccccCCceEEEEeCCCC-EEEEE---CCCCEEEEEECCCCc
Confidence 1233556677775 55442 233578889988875
|
|
| >PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00029 Score=56.20 Aligned_cols=76 Identities=17% Similarity=0.170 Sum_probs=52.1
Q ss_pred eeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCccHH
Q 004766 463 TKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCF 542 (732)
Q Consensus 463 ~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~ 542 (732)
++|.+..+.|++ .+..+|+++||....+. .|. .+...|+++||.|+..|.||.|... + .....+.+
T Consensus 2 ~~L~~~~w~p~~----~~k~~v~i~HG~~eh~~--ry~-~~a~~L~~~G~~V~~~D~rGhG~S~------g-~rg~~~~~ 67 (79)
T PF12146_consen 2 TKLFYRRWKPEN----PPKAVVVIVHGFGEHSG--RYA-HLAEFLAEQGYAVFAYDHRGHGRSE------G-KRGHIDSF 67 (79)
T ss_pred cEEEEEEecCCC----CCCEEEEEeCCcHHHHH--HHH-HHHHHHHhCCCEEEEECCCcCCCCC------C-cccccCCH
Confidence 678888887765 26889999999754432 344 3456677799999999999999754 1 12223456
Q ss_pred HHHHHHHHHH
Q 004766 543 DDFISASEYL 552 (732)
Q Consensus 543 ~D~~~~~~~l 552 (732)
+++++-+..+
T Consensus 68 ~~~v~D~~~~ 77 (79)
T PF12146_consen 68 DDYVDDLHQF 77 (79)
T ss_pred HHHHHHHHHH
Confidence 6666655544
|
Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. |
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.044 Score=51.18 Aligned_cols=230 Identities=12% Similarity=0.063 Sum_probs=113.9
Q ss_pred EEEeEEECCCCcEEEEEEeccCCceEEEEEE----ECCCCceec----------ccccceeeeeEEEEeCCcEEEEEEec
Q 004766 133 ALIKVSVSEDAKYLAYALSYSGSDWATIKLM----RIEDQIVEA----------DALSWFKFSSIAWTHDSKGFFYSRYP 198 (732)
Q Consensus 133 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~----dl~~g~~~~----------~~~~~~~~~~~~WspDg~~l~y~~~~ 198 (732)
.+..+.|.|.|.+.|..++ +....|.-+ |+..+...+ ..-....+...+|||+|..|+-.+++
T Consensus 34 airav~fhp~g~lyavgsn---skt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsnd 110 (350)
T KOG0641|consen 34 AIRAVAFHPAGGLYAVGSN---SKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSND 110 (350)
T ss_pred heeeEEecCCCceEEeccC---CceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCC
Confidence 4668999999998876642 333444332 343332111 00111124678999999988766543
Q ss_pred CCCCCCCCCCCCcccCCcccEEEEEECCCCCCCC-eEEEecCCCCeeEEEeEE---ecCCcEEEEEEecCCcceEEEEEE
Q 004766 199 APKEGKDMDAGTETDSNLYHEFYYHFLGTKQSED-ILCWKDPEHPKYIFSGHV---TEDGQYLVMCIEENCDPVNKVYYC 274 (732)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~-~~v~~~~~~~~~~~~~~~---SpDg~~l~~~~~~~~~~~~~l~~~ 274 (732)
. .-++...+..|.+... .+-|.- +++-+..++| +..|..|+.+...+ .-.||+.
T Consensus 111 k-----------------~ik~l~fn~dt~~~~g~dle~nm--hdgtirdl~fld~~~s~~~il~s~gag---dc~iy~t 168 (350)
T KOG0641|consen 111 K-----------------TIKVLPFNADTCNATGHDLEFNM--HDGTIRDLAFLDDPESGGAILASAGAG---DCKIYIT 168 (350)
T ss_pred c-----------------eEEEEecccccccccCcceeeee--cCCceeeeEEecCCCcCceEEEecCCC---cceEEEe
Confidence 3 1123333333322110 011111 1122233333 23445555544332 4679998
Q ss_pred eCCCCCCCcccccccCCCCCcEEeeecccceEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCC-----CC
Q 004766 275 DLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEA-----ER 349 (732)
Q Consensus 275 d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~-----~~ 349 (732)
|-..+. ++..+..........++.+|-.+. +.. ....|-.+|+.-+....+|-... +.
T Consensus 169 dc~~g~-------------~~~a~sghtghilalyswn~~m~~--sgs--qdktirfwdlrv~~~v~~l~~~~~~~gles 231 (350)
T KOG0641|consen 169 DCGRGQ-------------GFHALSGHTGHILALYSWNGAMFA--SGS--QDKTIRFWDLRVNSCVNTLDNDFHDGGLES 231 (350)
T ss_pred ecCCCC-------------cceeecCCcccEEEEEEecCcEEE--ccC--CCceEEEEeeeccceeeeccCcccCCCccc
Confidence 876642 244444322222233444443322 221 22345556665443222221111 12
Q ss_pred CceeEEEEecCCEEEEEEecCCeeEEEEEeCCCCceeeecccccceeeEeecccCCc
Q 004766 350 DVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDS 406 (732)
Q Consensus 350 ~~l~~~~~~~~~~l~~~~~~~g~~~l~~~d~~~g~~~~~l~~~~g~v~~~~~s~d~~ 406 (732)
..+..+.+.+.++|+++...+. .-.++|+..|..+++.......+..+.++|..-
T Consensus 232 savaav~vdpsgrll~sg~~ds--sc~lydirg~r~iq~f~phsadir~vrfsp~a~ 286 (350)
T KOG0641|consen 232 SAVAAVAVDPSGRLLASGHADS--SCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAH 286 (350)
T ss_pred ceeEEEEECCCcceeeeccCCC--ceEEEEeeCCceeeeeCCCccceeEEEeCCCce
Confidence 3456677777688988887774 455678876666566654455566677777543
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.026 Score=57.93 Aligned_cols=161 Identities=16% Similarity=0.181 Sum_probs=101.2
Q ss_pred EEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceeccc---ccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCC
Q 004766 134 LIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADA---LSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGT 210 (732)
Q Consensus 134 ~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~---~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~ 210 (732)
+...+..|.|.|+..+.++ .++-..|+.+|..+... ...+.+.+.++.||| ++|...
T Consensus 306 V~~ls~h~tgeYllsAs~d-----~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDg--Lifgtg------------- 365 (506)
T KOG0289|consen 306 VTGLSLHPTGEYLLSASND-----GTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDG--LIFGTG------------- 365 (506)
T ss_pred ceeeeeccCCcEEEEecCC-----ceEEEEEccCCcEEEEEeeccccceeEEeeEcCCc--eEEecc-------------
Confidence 6788899999999877532 46677889999865422 223457899999998 444431
Q ss_pred cccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccC
Q 004766 211 ETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRD 290 (732)
Q Consensus 211 ~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~ 290 (732)
.....|..|++.++. .+.-| +.+.+-+..++||.+|=||+....++. +.++|+....
T Consensus 366 ----t~d~~vkiwdlks~~--~~a~F--pght~~vk~i~FsENGY~Lat~add~~-----V~lwDLRKl~---------- 422 (506)
T KOG0289|consen 366 ----TPDGVVKIWDLKSQT--NVAKF--PGHTGPVKAISFSENGYWLATAADDGS-----VKLWDLRKLK---------- 422 (506)
T ss_pred ----CCCceEEEEEcCCcc--ccccC--CCCCCceeEEEeccCceEEEEEecCCe-----EEEEEehhhc----------
Confidence 123468888887653 22223 334445678999999999988775432 8888987622
Q ss_pred CCCCcEEeee--cccceEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEecc
Q 004766 291 GLLPFVKLID--GFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIP 345 (732)
Q Consensus 291 ~~~~~~~l~~--~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~ 345 (732)
.++.+.- ........|...|..|.+. +...+||.++-.+.. |+.+..
T Consensus 423 ---n~kt~~l~~~~~v~s~~fD~SGt~L~~~----g~~l~Vy~~~k~~k~-W~~~~~ 471 (506)
T KOG0289|consen 423 ---NFKTIQLDEKKEVNSLSFDQSGTYLGIA----GSDLQVYICKKKTKS-WTEIKE 471 (506)
T ss_pred ---ccceeeccccccceeEEEcCCCCeEEee----cceeEEEEEeccccc-ceeeeh
Confidence 1222221 1111122366667776654 345678888755554 776643
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.056 Score=54.46 Aligned_cols=212 Identities=14% Similarity=0.110 Sum_probs=123.1
Q ss_pred eeEEEEe-CCcEEEEEEecCCCCCCCCCCCCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEE
Q 004766 181 SSIAWTH-DSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVM 259 (732)
Q Consensus 181 ~~~~Wsp-Dg~~l~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~ 259 (732)
.+++.+| ++..++|.+.+. ..+++++..++... .....+++.-|.-...||+||++|+.
T Consensus 8 H~~a~~p~~~~avafaRRPG------------------~~~~v~D~~~g~~~--~~~~a~~gRHFyGHg~fs~dG~~Lyt 67 (305)
T PF07433_consen 8 HGVAAHPTRPEAVAFARRPG------------------TFALVFDCRTGQLL--QRLWAPPGRHFYGHGVFSPDGRLLYT 67 (305)
T ss_pred cceeeCCCCCeEEEEEeCCC------------------cEEEEEEcCCCcee--eEEcCCCCCEEecCEEEcCCCCEEEE
Confidence 6788899 566777776554 23667777666433 23333444456667889999999987
Q ss_pred EEecCCcceEEEEEEeCCCCCCCcccccccCCCCCcEEeee-cccceEEEEEecCCeEEEEeCC---------------C
Q 004766 260 CIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLID-GFDAQYEVIANDDTVFTFLTNK---------------D 323 (732)
Q Consensus 260 ~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~s~dg~~l~~~s~~---------------~ 323 (732)
+-++-.+....|-++|.+.+- ........ +.+.--..+.|||+.|++ .|- +
T Consensus 68 TEnd~~~g~G~IgVyd~~~~~------------~ri~E~~s~GIGPHel~l~pDG~tLvV-ANGGI~Thpd~GR~kLNl~ 134 (305)
T PF07433_consen 68 TENDYETGRGVIGVYDAARGY------------RRIGEFPSHGIGPHELLLMPDGETLVV-ANGGIETHPDSGRAKLNLD 134 (305)
T ss_pred eccccCCCcEEEEEEECcCCc------------EEEeEecCCCcChhhEEEcCCCCEEEE-EcCCCccCcccCceecChh
Confidence 766655556778889987321 00111111 111111247889887775 331 1
Q ss_pred CCCceEEEEeCCCCCCceE--eccCCCCCceeEEEEecCCEEEEEEecCCe-----eEEEEEeCCCCceeeecccc----
Q 004766 324 APKYKIIRVDLKEPNDWFE--VIPEAERDVLESATAVNLNQMIVSYLSDVK-----YVLQIRDLKNGSLLHQLPIE---- 392 (732)
Q Consensus 324 ~~~~~l~~~d~~~~~~~~~--l~~~~~~~~l~~~~~~~~~~l~~~~~~~g~-----~~l~~~d~~~g~~~~~l~~~---- 392 (732)
.....|..+|..+++-... |-+......|.-+.+.+++.+++.....+. +-|.+++. |+.++.+..|
T Consensus 135 tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~ 212 (305)
T PF07433_consen 135 TMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQW 212 (305)
T ss_pred hcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHH
Confidence 1133566777676652222 222222245777788776666666554432 44555554 3333555543
Q ss_pred ---cceeeEeecccCCcEEEEEEecCCCCceEEEEECCCCC
Q 004766 393 ---IGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 430 (732)
Q Consensus 393 ---~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~~ 430 (732)
.+.+.+++++.++..+.+ +|+. -..+..+|.+++.
T Consensus 213 ~~l~~Y~gSIa~~~~g~~ia~--tsPr-Gg~~~~~d~~tg~ 250 (305)
T PF07433_consen 213 RRLNGYIGSIAADRDGRLIAV--TSPR-GGRVAVWDAATGR 250 (305)
T ss_pred HhhCCceEEEEEeCCCCEEEE--ECCC-CCEEEEEECCCCC
Confidence 245677888888886654 4543 3567788988884
|
|
| >PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00092 Score=61.99 Aligned_cols=87 Identities=11% Similarity=0.064 Sum_probs=62.5
Q ss_pred CcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHH
Q 004766 498 SFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGA 577 (732)
Q Consensus 498 ~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~ 577 (732)
.++......|+++|+.|+.+|-+- .-|. ....+..-.|+...+++..++-- .+|+.+.|.|+|+=++-.
T Consensus 16 ~~d~~~a~~l~~~G~~VvGvdsl~-----Yfw~----~rtP~~~a~Dl~~~i~~y~~~w~--~~~vvLiGYSFGADvlP~ 84 (192)
T PF06057_consen 16 DLDKQIAEALAKQGVPVVGVDSLR-----YFWS----ERTPEQTAADLARIIRHYRARWG--RKRVVLIGYSFGADVLPF 84 (192)
T ss_pred hhhHHHHHHHHHCCCeEEEechHH-----HHhh----hCCHHHHHHHHHHHHHHHHHHhC--CceEEEEeecCCchhHHH
Confidence 566667778888999999999642 1122 23345567889999888777633 469999999999999989
Q ss_pred HHhhCCCeeeEEEEcCCc
Q 004766 578 CINQRPDLFGCALAHVGV 595 (732)
Q Consensus 578 ~~~~~p~~f~a~v~~~p~ 595 (732)
+.++-|...++-|..+-+
T Consensus 85 ~~nrLp~~~r~~v~~v~L 102 (192)
T PF06057_consen 85 IYNRLPAALRARVAQVVL 102 (192)
T ss_pred HHhhCCHHHHhheeEEEE
Confidence 888877755444444333
|
VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium []. |
| >COG3243 PhaC Poly(3-hydroxyalkanoate) synthetase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0016 Score=67.27 Aligned_cols=89 Identities=13% Similarity=0.105 Sum_probs=59.4
Q ss_pred hHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhh
Q 004766 502 SRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQ 581 (732)
Q Consensus 502 ~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~ 581 (732)
.+..+|.++|.-|++++.|+-... .. .........+++..|++.+++. +-.++|-+.|+|.||.+...+++.
T Consensus 130 s~V~~l~~~g~~vfvIsw~nPd~~-~~-----~~~~edYi~e~l~~aid~v~~i--tg~~~InliGyCvGGtl~~~ala~ 201 (445)
T COG3243 130 SLVRWLLEQGLDVFVISWRNPDAS-LA-----AKNLEDYILEGLSEAIDTVKDI--TGQKDINLIGYCVGGTLLAAALAL 201 (445)
T ss_pred cHHHHHHHcCCceEEEeccCchHh-hh-----hccHHHHHHHHHHHHHHHHHHH--hCccccceeeEecchHHHHHHHHh
Confidence 355677779999999998874421 11 1112222235555777777765 334689999999999999999888
Q ss_pred CCCe-eeEEEEcCCcccc
Q 004766 582 RPDL-FGCALAHVGVMDM 598 (732)
Q Consensus 582 ~p~~-f~a~v~~~p~~d~ 598 (732)
++.. .+.++...-.+|.
T Consensus 202 ~~~k~I~S~T~lts~~DF 219 (445)
T COG3243 202 MAAKRIKSLTLLTSPVDF 219 (445)
T ss_pred hhhcccccceeeecchhh
Confidence 7876 6666655444443
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.017 Score=61.16 Aligned_cols=233 Identities=12% Similarity=0.088 Sum_probs=130.8
Q ss_pred eEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCC
Q 004766 136 KVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSN 215 (732)
Q Consensus 136 ~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~ 215 (732)
.++||+|..+.|..+. ..++++++.+-......+...+++.++.||-+.--+.+..-... .+
T Consensus 130 ~~qfs~dEsl~arlv~------nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~------------kG 191 (566)
T KOG2315|consen 130 VPQFSIDESLAARLVS------NEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEK------------KG 191 (566)
T ss_pred ccccccchhhhhhhhc------ceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEccCC------------CC
Confidence 5789999999888862 36788887653322222222345788999875433333222111 24
Q ss_pred cccEEEEEECCCCCCC----CeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCc-------ceEEEEEEeCCCCCCCcc
Q 004766 216 LYHEFYYHFLGTKQSE----DILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCD-------PVNKVYYCDLSALPEGLE 284 (732)
Q Consensus 216 ~~~~v~~~~lgt~~~~----~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~-------~~~~l~~~d~~~~~~~~~ 284 (732)
.+..|.++........ ....|.. + -+...|.+-|.-|++.....-+ .++.||+++.++ .
T Consensus 192 aPa~vri~~~~~~~~~~~~a~ksFFka-d----kvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g-~---- 261 (566)
T KOG2315|consen 192 APASVRIYKYPEEGQHQPVANKSFFKA-D----KVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQG-E---- 261 (566)
T ss_pred CCcEEEEeccccccccchhhhcccccc-c----eeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecC-c----
Confidence 5566666666522111 1111111 1 2467899999888766543221 257899998874 2
Q ss_pred cccccCCCCCcEEeeecccceEE-EEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecC-CE
Q 004766 285 GFKKRDGLLPFVKLIDGFDAQYE-VIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNL-NQ 362 (732)
Q Consensus 285 ~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~-~~ 362 (732)
.....|.. ....+. .|+++|+.+.++..-- -.++-.+|++..- .--+++.+. ..+.+.+. +.
T Consensus 262 --------s~~V~L~k-~GPVhdv~W~~s~~EF~VvyGfM--PAkvtifnlr~~~--v~df~egpR---N~~~fnp~g~i 325 (566)
T KOG2315|consen 262 --------SVSVPLLK-EGPVHDVTWSPSGREFAVVYGFM--PAKVTIFNLRGKP--VFDFPEGPR---NTAFFNPHGNI 325 (566)
T ss_pred --------eEEEecCC-CCCceEEEECCCCCEEEEEEecc--cceEEEEcCCCCE--eEeCCCCCc---cceEECCCCCE
Confidence 11223332 222333 4999999998876532 2356677776532 222344322 33455654 44
Q ss_pred EEEEEecCCeeEEEEEeCCCCceeeecccccceeeEeecccCCcEEEEEEec
Q 004766 363 MIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTS 414 (732)
Q Consensus 363 l~~~~~~~g~~~l~~~d~~~g~~~~~l~~~~g~v~~~~~s~d~~~l~~~~ss 414 (732)
+++..-.+-.+.+-+||..+-+.+..+..... +.+.++|||..++-..++
T Consensus 326 i~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~t--t~~eW~PdGe~flTATTa 375 (566)
T KOG2315|consen 326 ILLAGFGNLPGDMEVWDVPNRKLIAKFKAANT--TVFEWSPDGEYFLTATTA 375 (566)
T ss_pred EEEeecCCCCCceEEEeccchhhccccccCCc--eEEEEcCCCcEEEEEecc
Confidence 56666666677999999876443333332222 356789999877655444
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.006 Score=62.24 Aligned_cols=200 Identities=15% Similarity=0.114 Sum_probs=105.8
Q ss_pred EeEEECCCCcEEEEEEeccCCceEEEEEEECCCCce-ecccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCccc
Q 004766 135 IKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIV-EADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETD 213 (732)
Q Consensus 135 ~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~-~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~ 213 (732)
..+++++||..||- |.....++||+...-.. +.+......+..+.|||||+.|+++..+
T Consensus 148 k~vaf~~~gs~lat-----gg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d--------------- 207 (398)
T KOG0771|consen 148 KVVAFNGDGSKLAT-----GGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD--------------- 207 (398)
T ss_pred eEEEEcCCCCEeee-----ccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC---------------
Confidence 46889999999983 34557899999655442 3233333345789999999999998533
Q ss_pred CCcccEEEEEECCCCCCCCeEEEe-c-CCCCeeEEEeEEecCC--cEEEEEEecCCcceEEEEEEeCC--CCCCCccccc
Q 004766 214 SNLYHEFYYHFLGTKQSEDILCWK-D-PEHPKYIFSGHVTEDG--QYLVMCIEENCDPVNKVYYCDLS--ALPEGLEGFK 287 (732)
Q Consensus 214 ~~~~~~v~~~~lgt~~~~~~~v~~-~-~~~~~~~~~~~~SpDg--~~l~~~~~~~~~~~~~l~~~d~~--~~~~~~~~~~ 287 (732)
...+|+..++.. +.. . .+.+..+....|+-|+ ..+.+....... ..+..+++. .+. .
T Consensus 208 -----~~~VW~~~~g~~----~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~--~~v~~~~~~~w~~~-~----- 270 (398)
T KOG0771|consen 208 -----SARVWSVNTGAA----LARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPG--GGVRLCDISLWSGS-N----- 270 (398)
T ss_pred -----ceEEEEeccCch----hhhcCCcccchhhhhceecccCCCceEEEEEecCCC--CceeEEEeeeeccc-c-----
Confidence 345566655421 111 1 1111122355666665 222222222221 112222221 110 0
Q ss_pred ccCCCCCcEEeeeccc-ceEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecCCEEEEE
Q 004766 288 KRDGLLPFVKLIDGFD-AQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVS 366 (732)
Q Consensus 288 ~~~~~~~~~~l~~~~~-~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~~l~~~ 366 (732)
-.+.+..+.... .....+|.||+.+.+-++. +.+..++..+-+ ...++++.....+.++.++++.+....
T Consensus 271 ----~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~d----GsVai~~~~~lq-~~~~vk~aH~~~VT~ltF~Pdsr~~~s 341 (398)
T KOG0771|consen 271 ----FLRLRKKIKRFKSISSLAVSDDGKFLALGTMD----GSVAIYDAKSLQ-RLQYVKEAHLGFVTGLTFSPDSRYLAS 341 (398)
T ss_pred ----ccchhhhhhccCcceeEEEcCCCcEEEEeccC----CcEEEEEeceee-eeEeehhhheeeeeeEEEcCCcCcccc
Confidence 011222222221 2223478899988877763 246677766554 344556554457888888886555545
Q ss_pred EecCCeeEEEEEeC
Q 004766 367 YLSDVKYVLQIRDL 380 (732)
Q Consensus 367 ~~~~g~~~l~~~d~ 380 (732)
...+....|..+..
T Consensus 342 vSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 342 VSSDNEAAVTKLAV 355 (398)
T ss_pred cccCCceeEEEEee
Confidence 44444344444444
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.038 Score=57.16 Aligned_cols=237 Identities=13% Similarity=0.110 Sum_probs=120.2
Q ss_pred EEEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceeccccc-ceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCC
Q 004766 132 AALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALS-WFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGT 210 (732)
Q Consensus 132 ~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~ 210 (732)
-.+-.+++||||++||+. |. ...|.|||..+++.+..... ...+.+++|-..-..+|.++.+
T Consensus 203 keil~~avS~Dgkylatg----g~-d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~D------------ 265 (479)
T KOG0299|consen 203 KEILTLAVSSDGKYLATG----GR-DRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASAD------------ 265 (479)
T ss_pred ceeEEEEEcCCCcEEEec----CC-CceEEEecCcccchhhcccccccceeeeeeecCccceeeeecC------------
Confidence 345578899999999965 22 25788999999997655222 2235677776444445544332
Q ss_pred cccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccC
Q 004766 211 ETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRD 290 (732)
Q Consensus 211 ~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~ 290 (732)
..+.+|.+..-. -...+|..++ -+.++.-..-++-+-+.. +. .+.++|-+.-++
T Consensus 266 -------rsvkvw~~~~~s-~vetlyGHqd---~v~~IdaL~reR~vtVGg-rD--rT~rlwKi~ees------------ 319 (479)
T KOG0299|consen 266 -------RSVKVWSIDQLS-YVETLYGHQD---GVLGIDALSRERCVTVGG-RD--RTVRLWKIPEES------------ 319 (479)
T ss_pred -------CceEEEehhHhH-HHHHHhCCcc---ceeeechhcccceEEecc-cc--ceeEEEeccccc------------
Confidence 345666654321 1123443222 233444443444332221 21 245565553222
Q ss_pred CCCCcEEeeecccceEEEEE-ecCCeEEEEeCCCCCCceEEEEeCCCCCC-ce-----EeccCC----CCCceeEEEEec
Q 004766 291 GLLPFVKLIDGFDAQYEVIA-NDDTVFTFLTNKDAPKYKIIRVDLKEPND-WF-----EVIPEA----ERDVLESATAVN 359 (732)
Q Consensus 291 ~~~~~~~l~~~~~~~~~~~s-~dg~~l~~~s~~~~~~~~l~~~d~~~~~~-~~-----~l~~~~----~~~~l~~~~~~~ 359 (732)
+.+..+......+.. -+..+++. +..++.|+++++...+. +. .+.+.. ....+.++...+
T Consensus 320 -----qlifrg~~~sidcv~~In~~Hfvs----GSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~ 390 (479)
T KOG0299|consen 320 -----QLIFRGGEGSIDCVAFINDEHFVS----GSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIP 390 (479)
T ss_pred -----eeeeeCCCCCeeeEEEecccceee----ccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecc
Confidence 111122222222111 13345442 23356788887765441 11 111110 012567777777
Q ss_pred CCEEEEEEecCCeeEEEEEeCCCCc-eeeecc-cc-cceeeEeecccCCcEEEEEEecCCCCceEE
Q 004766 360 LNQMIVSYLSDVKYVLQIRDLKNGS-LLHQLP-IE-IGSVNAISARREDSVVFISFTSFLIPGIVY 422 (732)
Q Consensus 360 ~~~l~~~~~~~g~~~l~~~d~~~g~-~~~~l~-~~-~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y 422 (732)
+..|+.+..-+|.-+|| -..+|- .+..|. ++ .|.|.++.++.+|+.++....-...-++++
T Consensus 391 ~sdL~asGS~~G~vrLW--~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk~ivagiGkEhRlGRW~ 454 (479)
T KOG0299|consen 391 GSDLLASGSWSGCVRLW--KIEDGLRAINLLYSLSLVGFVNSLAFSNSGKRIVAGIGKEHRLGRWW 454 (479)
T ss_pred cCceEEecCCCCceEEE--EecCCccccceeeecccccEEEEEEEccCCCEEEEecccccccceee
Confidence 67788888878755554 444452 112221 22 577888888888887766543333333333
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.017 Score=63.25 Aligned_cols=245 Identities=15% Similarity=0.088 Sum_probs=141.7
Q ss_pred EEEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCc
Q 004766 132 AALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTE 211 (732)
Q Consensus 132 ~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~ 211 (732)
..+..+.+|.|...++-. .| ..|.+|+..+++.+.....+ ..-...|-|.++.|+.....+
T Consensus 374 ~dVRsl~vS~d~~~~~Sg---a~---~SikiWn~~t~kciRTi~~~-y~l~~~Fvpgd~~Iv~G~k~G------------ 434 (888)
T KOG0306|consen 374 SDVRSLCVSSDSILLASG---AG---ESIKIWNRDTLKCIRTITCG-YILASKFVPGDRYIVLGTKNG------------ 434 (888)
T ss_pred hheeEEEeecCceeeeec---CC---CcEEEEEccCcceeEEeccc-cEEEEEecCCCceEEEeccCC------------
Confidence 457889999998655521 22 26889999988754322212 224567889888888765332
Q ss_pred ccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCC---CCCCC-ccccc
Q 004766 212 TDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLS---ALPEG-LEGFK 287 (732)
Q Consensus 212 ~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~---~~~~~-~~~~~ 287 (732)
.+-++++.+..- +=..+.+.+-+.+++.+||++..+..+.+.+ -.+|-..+. .+... ...+.
T Consensus 435 -------el~vfdlaS~~l----~Eti~AHdgaIWsi~~~pD~~g~vT~saDkt---VkfWdf~l~~~~~gt~~k~lsl~ 500 (888)
T KOG0306|consen 435 -------ELQVFDLASASL----VETIRAHDGAIWSISLSPDNKGFVTGSADKT---VKFWDFKLVVSVPGTQKKVLSLK 500 (888)
T ss_pred -------ceEEEEeehhhh----hhhhhccccceeeeeecCCCCceEEecCCcE---EEEEeEEEEeccCcccceeeeec
Confidence 456667665421 1111223445678999999999877665433 333322221 11100 00000
Q ss_pred ccCCCCCcEEeeecccceEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecCCEEEEEE
Q 004766 288 KRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSY 367 (732)
Q Consensus 288 ~~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~~l~~~~ 367 (732)
+ -+.|--..+.-...+||||+.|++.- .+. ..++|.+| +-+-...|..|. -.+..+.+++|..++++.
T Consensus 501 ~------~rtLel~ddvL~v~~Spdgk~LaVsL-Ldn-TVkVyflD--tlKFflsLYGHk--LPV~smDIS~DSklivTg 568 (888)
T KOG0306|consen 501 H------TRTLELEDDVLCVSVSPDGKLLAVSL-LDN-TVKVYFLD--TLKFFLSLYGHK--LPVLSMDISPDSKLIVTG 568 (888)
T ss_pred c------ceEEeccccEEEEEEcCCCcEEEEEe-ccC-eEEEEEec--ceeeeeeecccc--cceeEEeccCCcCeEEec
Confidence 0 01111111111224899998777533 222 45677766 333235666665 567788899888999999
Q ss_pred ecCCeeEEEEEeCCCCceeeecccccceeeEeecccCCcEEEEEEecCCCCceEEEEECC
Q 004766 368 LSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLK 427 (732)
Q Consensus 368 ~~~g~~~l~~~d~~~g~~~~~l~~~~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~ 427 (732)
+.| ..+.+|-++=|...+.+-.+..+|+.+.+-|. ..++|+.+- -..+-.||..
T Consensus 569 SAD--KnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~-~~~FFt~gK---D~kvKqWDg~ 622 (888)
T KOG0306|consen 569 SAD--KNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPK-THLFFTCGK---DGKVKQWDGE 622 (888)
T ss_pred cCC--CceEEeccccchhhhhhhcccCceeEEEEccc-ceeEEEecC---cceEEeechh
Confidence 888 45777777767765666656777888887774 456665543 2456666643
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0071 Score=63.94 Aligned_cols=145 Identities=13% Similarity=0.094 Sum_probs=89.2
Q ss_pred eEEECCCCcEEEEEEecc----CCc---eEEEEEEECCCCce-ecccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCC
Q 004766 136 KVSVSEDAKYLAYALSYS----GSD---WATIKLMRIEDQIV-EADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMD 207 (732)
Q Consensus 136 ~~~~SPDG~~la~~~~~~----G~e---~~~i~v~dl~~g~~-~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~ 207 (732)
.+.|.+-|+-|+...+.. |.. ..+||++++++-.. ++....+ .+.++.|+|+|+.|+.+-.
T Consensus 222 qm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~G-PVhdv~W~~s~~EF~VvyG---------- 290 (566)
T KOG2315|consen 222 QMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEG-PVHDVTWSPSGREFAVVYG---------- 290 (566)
T ss_pred EEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCC-CceEEEECCCCCEEEEEEe----------
Confidence 356888888777665432 211 24899999984332 2322222 3589999999999888752
Q ss_pred CCCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCccccc
Q 004766 208 AGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFK 287 (732)
Q Consensus 208 ~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~ 287 (732)
--|..+-.+++... .|++.+..+. ..+-|+|-|++|++..-.+- ..++-++|..+.+
T Consensus 291 -------fMPAkvtifnlr~~-----~v~df~egpR--N~~~fnp~g~ii~lAGFGNL--~G~mEvwDv~n~K------- 347 (566)
T KOG2315|consen 291 -------FMPAKVTIFNLRGK-----PVFDFPEGPR--NTAFFNPHGNIILLAGFGNL--PGDMEVWDVPNRK------- 347 (566)
T ss_pred -------cccceEEEEcCCCC-----EeEeCCCCCc--cceEECCCCCEEEEeecCCC--CCceEEEeccchh-------
Confidence 23445666666532 5665554442 25779999999999876554 3445566766521
Q ss_pred ccCCCCCcEEeeecccceEEEEEecCCeEEEEeC
Q 004766 288 KRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTN 321 (732)
Q Consensus 288 ~~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~ 321 (732)
.+... .-.+..+.-|+|||++|+..+.
T Consensus 348 ------~i~~~-~a~~tt~~eW~PdGe~flTATT 374 (566)
T KOG2315|consen 348 ------LIAKF-KAANTTVFEWSPDGEYFLTATT 374 (566)
T ss_pred ------hcccc-ccCCceEEEEcCCCcEEEEEec
Confidence 01111 1123345569999998886654
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.021 Score=56.23 Aligned_cols=218 Identities=13% Similarity=0.035 Sum_probs=105.5
Q ss_pred CCEEEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCC
Q 004766 130 GTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAG 209 (732)
Q Consensus 130 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~ 209 (732)
+...+..+.||+||++|+-++ ....|.+||+..|.++....-.....+..|.|-.+..+.+..-+
T Consensus 64 H~~pi~sl~WS~dgr~LltsS-----~D~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~---------- 128 (405)
T KOG1273|consen 64 HVRPITSLCWSRDGRKLLTSS-----RDWSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIME---------- 128 (405)
T ss_pred cccceeEEEecCCCCEeeeec-----CCceeEEEeccCCCceeEEEccCccceeeeccccCCeEEEEEec----------
Confidence 345688999999999987553 23578999999998654322111234566777554444443211
Q ss_pred CcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEe---EEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccc
Q 004766 210 TETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSG---HVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGF 286 (732)
Q Consensus 210 ~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~---~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~ 286 (732)
. .-++.+++.+ ...++-..++.+ ..... .+.+-|++|+...+ ...+.+++.++.++.
T Consensus 129 ------~--sp~vi~~s~~--~h~~Lp~d~d~d-ln~sas~~~fdr~g~yIitGts-----KGkllv~~a~t~e~v---- 188 (405)
T KOG1273|consen 129 ------E--SPVVIDFSDP--KHSVLPKDDDGD-LNSSASHGVFDRRGKYIITGTS-----KGKLLVYDAETLECV---- 188 (405)
T ss_pred ------C--CcEEEEecCC--ceeeccCCCccc-cccccccccccCCCCEEEEecC-----cceEEEEecchheee----
Confidence 0 1223333332 122222111111 11222 37888999865433 345788888774321
Q ss_pred cccCCCCCcEEeeecccceEEEEEecCCeEEEEeCCCCCCceEEEEeCC---CCCCceEeccCCC------CCceeEEEE
Q 004766 287 KKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLK---EPNDWFEVIPEAE------RDVLESATA 357 (732)
Q Consensus 287 ~~~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~---~~~~~~~l~~~~~------~~~l~~~~~ 357 (732)
..-+.+.--....-.++-.|+.|++-+.+. -|-.++++ ....-..+.+... ...-..+.+
T Consensus 189 -------as~rits~~~IK~I~~s~~g~~liiNtsDR----vIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccf 257 (405)
T KOG1273|consen 189 -------ASFRITSVQAIKQIIVSRKGRFLIINTSDR----VIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCF 257 (405)
T ss_pred -------eeeeechheeeeEEEEeccCcEEEEecCCc----eEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheee
Confidence 011111100001113566777777644321 13333332 1110011111000 001123455
Q ss_pred ecCCEEEEEEecCCeeEEEEEeCCCCceeeecccccc
Q 004766 358 VNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIG 394 (732)
Q Consensus 358 ~~~~~l~~~~~~~g~~~l~~~d~~~g~~~~~l~~~~g 394 (732)
+.++..++..+ .....||+|....|..++.|..+.|
T Consensus 258 s~dgeYv~a~s-~~aHaLYIWE~~~GsLVKILhG~kg 293 (405)
T KOG1273|consen 258 SGDGEYVCAGS-ARAHALYIWEKSIGSLVKILHGTKG 293 (405)
T ss_pred cCCccEEEecc-ccceeEEEEecCCcceeeeecCCch
Confidence 55333333333 3447899999888887666665543
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.16 Score=50.15 Aligned_cols=74 Identities=11% Similarity=0.054 Sum_probs=47.8
Q ss_pred EEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcc
Q 004766 133 ALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTET 212 (732)
Q Consensus 133 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~ 212 (732)
.|+.++|||.+..|+.++- + ..|+++|+.+.+.+.........-..+|.+ ...++...
T Consensus 15 ~IS~v~f~~~~~~LLvssW-D----gslrlYdv~~~~l~~~~~~~~plL~c~F~d-~~~~~~G~---------------- 72 (323)
T KOG1036|consen 15 GISSVKFSPSSSDLLVSSW-D----GSLRLYDVPANSLKLKFKHGAPLLDCAFAD-ESTIVTGG---------------- 72 (323)
T ss_pred ceeeEEEcCcCCcEEEEec-c----CcEEEEeccchhhhhheecCCceeeeeccC-CceEEEec----------------
Confidence 3678999999998887752 2 368889987765332222222234567774 45666653
Q ss_pred cCCcccEEEEEECCCCCCC
Q 004766 213 DSNLYHEFYYHFLGTKQSE 231 (732)
Q Consensus 213 ~~~~~~~v~~~~lgt~~~~ 231 (732)
-..+|.++|+.+++..
T Consensus 73 ---~dg~vr~~Dln~~~~~ 88 (323)
T KOG1036|consen 73 ---LDGQVRRYDLNTGNED 88 (323)
T ss_pred ---cCceEEEEEecCCcce
Confidence 3347999999887643
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.043 Score=55.01 Aligned_cols=142 Identities=18% Similarity=0.094 Sum_probs=78.1
Q ss_pred eCCCCCceEEeCCCCcCCCCCEEEEeEEECCCCcEEEEEEeccCC--ce--EEEEEEECCCCceecccccceeeeeEEEE
Q 004766 111 DSLDAKAKVLLDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSGS--DW--ATIKLMRIEDQIVEADALSWFKFSSIAWT 186 (732)
Q Consensus 111 ~~~~~~~~~l~D~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~--e~--~~i~v~dl~~g~~~~~~~~~~~~~~~~Ws 186 (732)
+..+++-+++++... ..........+.+.|||+ |.++...... .. ..|+.++.. ++.......-....+++|+
T Consensus 66 d~~~g~~~~~~~~~~-~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s 142 (246)
T PF08450_consen 66 DPDTGKVTVLADLPD-GGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFS 142 (246)
T ss_dssp ETTTTEEEEEEEEET-TCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEE
T ss_pred ecCCCcEEEEeeccC-CCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEEC
Confidence 333444455555411 111346678899999999 4444332211 11 578999987 5532211111113689999
Q ss_pred eCCcEEEEEEecCCCCCCCCCCCCcccCCcccEEEEEECCCCCC--C-CeEEEecCCCCeeEEEeEEecCCcEEEEEEec
Q 004766 187 HDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQS--E-DILCWKDPEHPKYIFSGHVTEDGQYLVMCIEE 263 (732)
Q Consensus 187 pDg~~l~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~--~-~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~ 263 (732)
||++.||++.. ...+|+++++..... . ...+.+.+...+...++++..+|+. ++....
T Consensus 143 ~dg~~lyv~ds------------------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l-~va~~~ 203 (246)
T PF08450_consen 143 PDGKTLYVADS------------------FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNL-WVADWG 203 (246)
T ss_dssp TTSSEEEEEET------------------TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-E-EEEEET
T ss_pred Ccchheeeccc------------------ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCE-EEEEcC
Confidence 99999988642 335699998864332 1 1223333333334568899999974 333332
Q ss_pred CCcceEEEEEEeCCC
Q 004766 264 NCDPVNKVYYCDLSA 278 (732)
Q Consensus 264 ~~~~~~~l~~~d~~~ 278 (732)
...|++++.++
T Consensus 204 ----~~~I~~~~p~G 214 (246)
T PF08450_consen 204 ----GGRIVVFDPDG 214 (246)
T ss_dssp ----TTEEEEEETTS
T ss_pred ----CCEEEEECCCc
Confidence 35688888774
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.038 Score=66.86 Aligned_cols=213 Identities=10% Similarity=0.050 Sum_probs=113.5
Q ss_pred EEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceeccccc--------c---------eeeeeEEEEeCCcEEEEEE
Q 004766 134 LIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALS--------W---------FKFSSIAWTHDSKGFFYSR 196 (732)
Q Consensus 134 ~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~~--------~---------~~~~~~~WspDg~~l~y~~ 196 (732)
-.++.++++|+.| |+.+..+ ..|+++|+.++........ + ....+++++|++..||++.
T Consensus 626 P~GIavd~~gn~L-YVaDt~n---~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad 701 (1057)
T PLN02919 626 PQGLAYNAKKNLL-YVADTEN---HALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAM 701 (1057)
T ss_pred CcEEEEeCCCCEE-EEEeCCC---ceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEE
Confidence 3578899998865 4445433 4789999887764321100 0 0124689999777777653
Q ss_pred ecCCCCCCCCCCCCcccCCcccEEEEEECCCCCCCCeEEEecC------C-------CCeeEEEeEEecCCcEEEEEEec
Q 004766 197 YPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDP------E-------HPKYIFSGHVTEDGQYLVMCIEE 263 (732)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~------~-------~~~~~~~~~~SpDg~~l~~~~~~ 263 (732)
...++|++++..++.. .++... . .-..-.+++++|||++|++....
T Consensus 702 ------------------~~~~~I~v~d~~~g~v---~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~ 760 (1057)
T PLN02919 702 ------------------AGQHQIWEYNISDGVT---RVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSE 760 (1057)
T ss_pred ------------------CCCCeEEEEECCCCeE---EEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECC
Confidence 2335677777654321 111110 0 00112368899999998765432
Q ss_pred CCcceEEEEEEeCCCCCCCcccccccCCCCCcEEeee-----c------c-cceEEEEEecCCeEEEEeCCCCCCceEEE
Q 004766 264 NCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLID-----G------F-DAQYEVIANDDTVFTFLTNKDAPKYKIIR 331 (732)
Q Consensus 264 ~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l~~-----~------~-~~~~~~~s~dg~~l~~~s~~~~~~~~l~~ 331 (732)
++.|+++|++++.... + ..........+.. + . ...-..++++|+ +|+ ++. .+.+|.+
T Consensus 761 ----n~~Irv~D~~tg~~~~--~-~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~-LYV-ADs--~N~rIrv 829 (1057)
T PLN02919 761 ----SSSIRALDLKTGGSRL--L-AGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQ-IYV-ADS--YNHKIKK 829 (1057)
T ss_pred ----CCeEEEEECCCCcEEE--E-EecccccCcccccccCCCCchhhhhccCCceeeEeCCCc-EEE-EEC--CCCEEEE
Confidence 3568888887532100 0 0000000000000 0 0 001123677775 554 432 3567999
Q ss_pred EeCCCCCCceEeccCCC------------CCceeEEEEecCCEEEEEEecCCeeEEEEEeCCCCce
Q 004766 332 VDLKEPNDWFEVIPEAE------------RDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSL 385 (732)
Q Consensus 332 ~d~~~~~~~~~l~~~~~------------~~~l~~~~~~~~~~l~~~~~~~g~~~l~~~d~~~g~~ 385 (732)
+|.+++. ...+..... -....++.+++++.+|++...+ ..|.++|+++++.
T Consensus 830 iD~~tg~-v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~N--n~Irvid~~~~~~ 892 (1057)
T PLN02919 830 LDPATKR-VTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNN--SLIRYLDLNKGEA 892 (1057)
T ss_pred EECCCCe-EEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCC--CEEEEEECCCCcc
Confidence 9987765 333332110 0123567777767787776555 5899999987654
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.027 Score=58.99 Aligned_cols=231 Identities=13% Similarity=0.081 Sum_probs=133.5
Q ss_pred eEEECCCCcEEEEEEeccCCceEEEEEEECCCCce--ecc-cccceeeeeEEEEeC--CcEEEEEEecCCCCCCCCCCCC
Q 004766 136 KVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIV--EAD-ALSWFKFSSIAWTHD--SKGFFYSRYPAPKEGKDMDAGT 210 (732)
Q Consensus 136 ~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~--~~~-~~~~~~~~~~~WspD--g~~l~y~~~~~~~~~~~~~~~~ 210 (732)
.++||-|.+++|.++ |+ .|+|.++ |+.. .+. .+....+..++|||- +..|+|-.-..
T Consensus 136 ~~k~s~~D~y~ARvv---~~---sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk----------- 197 (561)
T COG5354 136 VLKFSIDDKYVARVV---GS---SLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEK----------- 197 (561)
T ss_pred eeeeeecchhhhhhc---cC---eEEEEec-CCccccCchhhccccceeeEEecCCCCCceEEEEcccc-----------
Confidence 468999999999985 33 6888887 5542 111 111123578999996 45566654211
Q ss_pred cccCCcccEEEEEECCCCCCC-CeEEEecCCCCeeEEEeEEecCCcEEEEEEecCC----c--ceEEEEEEeCCCCCCCc
Q 004766 211 ETDSNLYHEFYYHFLGTKQSE-DILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENC----D--PVNKVYYCDLSALPEGL 283 (732)
Q Consensus 211 ~~~~~~~~~v~~~~lgt~~~~-~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~----~--~~~~l~~~d~~~~~~~~ 283 (732)
.+.+.++..+.+..+... ...++... .+.+.|-+.|++|++....+. + ..+.||++++....
T Consensus 198 ---~~kpa~~~i~sIp~~s~l~tk~lfk~~-----~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~--- 266 (561)
T COG5354 198 ---LNKPAMVRILSIPKNSVLVTKNLFKVS-----GVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERS--- 266 (561)
T ss_pred ---CCCCcEEEEEEccCCCeeeeeeeEeec-----ccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccc---
Confidence 345667777777633211 12233321 247899999999988775543 1 13779999887521
Q ss_pred ccccccCCCCCcEEeeecccceEE-EEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecC-C
Q 004766 284 EGFKKRDGLLPFVKLIDGFDAQYE-VIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNL-N 361 (732)
Q Consensus 284 ~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~-~ 361 (732)
.+... .-.+.... .|.|+++++.+++... ...+..+|+.+. .+-.+|+..... +.+++. +
T Consensus 267 ---------i~V~~--~~~~pVhdf~W~p~S~~F~vi~g~~--pa~~s~~~lr~N--l~~~~Pe~~rNT---~~fsp~~r 328 (561)
T COG5354 267 ---------IPVEK--DLKDPVHDFTWEPLSSRFAVISGYM--PASVSVFDLRGN--LRFYFPEQKRNT---IFFSPHER 328 (561)
T ss_pred ---------cceec--cccccceeeeecccCCceeEEeccc--ccceeecccccc--eEEecCCccccc---ccccCccc
Confidence 11211 11222222 4999999999888532 234667777664 355556553222 233432 5
Q ss_pred EEEEEEecCCeeEEEEEeCCCCceeeec-ccccceeeEeecccCCcEEEEEEecC
Q 004766 362 QMIVSYLSDVKYVLQIRDLKNGSLLHQL-PIEIGSVNAISARREDSVVFISFTSF 415 (732)
Q Consensus 362 ~l~~~~~~~g~~~l~~~d~~~g~~~~~l-~~~~g~v~~~~~s~d~~~l~~~~ss~ 415 (732)
++++..-.+-...+.+++.. |+- ..+ .+..-..+...++||+..+...+.|+
T Consensus 329 ~il~agF~nl~gni~i~~~~-~rf-~~~~~~~~~n~s~~~wspd~qF~~~~~ts~ 381 (561)
T COG5354 329 YILFAGFDNLQGNIEIFDPA-GRF-KVAGAFNGLNTSYCDWSPDGQFYDTDTTSE 381 (561)
T ss_pred EEEEecCCccccceEEeccC-Cce-EEEEEeecCCceEeeccCCceEEEecCCCc
Confidence 67776666766788899987 553 222 22111122345788887555544443
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.068 Score=52.77 Aligned_cols=234 Identities=14% Similarity=0.112 Sum_probs=120.6
Q ss_pred EEEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceeccccc-ceeeeeEEEEeCCc--EEEEEEecCCCCCCCCCC
Q 004766 132 AALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALS-WFKFSSIAWTHDSK--GFFYSRYPAPKEGKDMDA 208 (732)
Q Consensus 132 ~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~~-~~~~~~~~WspDg~--~l~y~~~~~~~~~~~~~~ 208 (732)
.++..+++| |.++| .|+..-+|+|+|+.+...+..... ......+.|.++-. .|+-.+.+
T Consensus 44 ~sitavAVs--~~~~a-----SGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdD---------- 106 (362)
T KOG0294|consen 44 GSITALAVS--GPYVA-----SGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDD---------- 106 (362)
T ss_pred cceeEEEec--ceeEe-----ccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCC----------
Confidence 346666665 77776 333335999999987654332211 11235667777654 55554332
Q ss_pred CCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccc
Q 004766 209 GTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKK 288 (732)
Q Consensus 209 ~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~ 288 (732)
..|..|+.+.= +++-....+...+..++..|.||..+-+..+ ..+.+++|-.|..+
T Consensus 107 ---------G~i~iw~~~~W----~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D-----~~lr~WNLV~Gr~a------ 162 (362)
T KOG0294|consen 107 ---------GHIIIWRVGSW----ELLKSLKAHKGQVTDLSIHPSGKLALSVGGD-----QVLRTWNLVRGRVA------ 162 (362)
T ss_pred ---------CcEEEEEcCCe----EEeeeecccccccceeEecCCCceEEEEcCC-----ceeeeehhhcCccc------
Confidence 35666666542 2332222233446688999999976544432 33677787665321
Q ss_pred cCCCCCcEEeeecccceEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecCCEEEEEEe
Q 004766 289 RDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYL 368 (732)
Q Consensus 289 ~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~~l~~~~~ 368 (732)
-..+|.. ......|+|.|+++++.... ...+|..+.+ .-..++.-+ ..+..+.+..++.++ ...
T Consensus 163 -----~v~~L~~--~at~v~w~~~Gd~F~v~~~~---~i~i~q~d~A--~v~~~i~~~---~r~l~~~~l~~~~L~-vG~ 226 (362)
T KOG0294|consen 163 -----FVLNLKN--KATLVSWSPQGDHFVVSGRN---KIDIYQLDNA--SVFREIENP---KRILCATFLDGSELL-VGG 226 (362)
T ss_pred -----eeeccCC--cceeeEEcCCCCEEEEEecc---EEEEEecccH--hHhhhhhcc---ccceeeeecCCceEE-Eec
Confidence 0112211 12233599999999876532 2345554432 211222211 112233444424444 444
Q ss_pred cCCeeEEEEEeCCCCceeeecccccceeeEee-c-ccCCcEEEEEEecCCCCceEEEEECCC
Q 004766 369 SDVKYVLQIRDLKNGSLLHQLPIEIGSVNAIS-A-RREDSVVFISFTSFLIPGIVYQCNLKT 428 (732)
Q Consensus 369 ~~g~~~l~~~d~~~g~~~~~l~~~~g~v~~~~-~-s~d~~~l~~~~ss~~~p~~~y~~d~~~ 428 (732)
++ ..|.++|-+++.....+..+...|-++. . .+++ +++++.+|. +.+..||+..
T Consensus 227 d~--~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~-~~lvTaSSD---G~I~vWd~~~ 282 (362)
T KOG0294|consen 227 DN--EWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEH-EYLVTASSD---GFIKVWDIDM 282 (362)
T ss_pred CC--ceEEEeccCCCccceeeecchhheeeeEEEecCCc-eEEEEeccC---ceEEEEEccc
Confidence 45 4688888876655455544433343332 2 3333 566666663 4555555543
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.057 Score=60.39 Aligned_cols=214 Identities=14% Similarity=0.176 Sum_probs=116.8
Q ss_pred CEEEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceeccccccee-eeeEEEEeCCcEEEEEEecCCCCCCCCCCC
Q 004766 131 TAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWFK-FSSIAWTHDSKGFFYSRYPAPKEGKDMDAG 209 (732)
Q Consensus 131 ~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~~~~~-~~~~~WspDg~~l~y~~~~~~~~~~~~~~~ 209 (732)
...+.++.|.|++-. |+ +|.+.+.|.||+..+.+.+-.-.+.-+ .....|.+.=-+|+-.++
T Consensus 51 dGpVRgv~FH~~qpl--FV---SGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASD------------ 113 (1202)
T KOG0292|consen 51 DGPVRGVDFHPTQPL--FV---SGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASD------------ 113 (1202)
T ss_pred CCccceeeecCCCCe--EE---ecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccC------------
Confidence 345779999999873 44 345569999999988775421111111 134455554445555443
Q ss_pred CcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCC------c
Q 004766 210 TETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEG------L 283 (732)
Q Consensus 210 ~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~------~ 283 (732)
.+.|..|+.-+.. -+.+..+ +.-|++-..|.|....|+-.+-+ ..|.+||..+...+ +
T Consensus 114 -------DQTIrIWNwqsr~--~iavltG--HnHYVMcAqFhptEDlIVSaSLD-----QTVRVWDisGLRkk~~~pg~~ 177 (1202)
T KOG0292|consen 114 -------DQTIRIWNWQSRK--CIAVLTG--HNHYVMCAQFHPTEDLIVSASLD-----QTVRVWDISGLRKKNKAPGSL 177 (1202)
T ss_pred -------CCeEEEEeccCCc--eEEEEec--CceEEEeeccCCccceEEEeccc-----ceEEEEeecchhccCCCCCCc
Confidence 2357777776543 2344443 44578888999988877655433 33677787652211 0
Q ss_pred ccccc---------cCCCCCcEEeeecccceEE--EEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCce
Q 004766 284 EGFKK---------RDGLLPFVKLIDGFDAQYE--VIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVL 352 (732)
Q Consensus 284 ~~~~~---------~~~~~~~~~l~~~~~~~~~--~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l 352 (732)
+.... .+...-++.+..+.+..+. .|.| ..=+|++..+....+||+++- +.. |..=+-...-..+
T Consensus 178 e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhp--TlpliVSG~DDRqVKlWrmne-tKa-WEvDtcrgH~nnV 253 (1202)
T KOG0292|consen 178 EDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHP--TLPLIVSGADDRQVKLWRMNE-TKA-WEVDTCRGHYNNV 253 (1202)
T ss_pred hhhhhccccchhhcCCcCeeeeeeecccccccceEEecC--CcceEEecCCcceeeEEEecc-ccc-eeehhhhcccCCc
Confidence 00000 0000112223334443333 3333 333445554445678888873 333 5533322222457
Q ss_pred eEEEEecCCEEEEEEecCCeeEEEEEeCCCC
Q 004766 353 ESATAVNLNQMIVSYLSDVKYVLQIRDLKNG 383 (732)
Q Consensus 353 ~~~~~~~~~~l~~~~~~~g~~~l~~~d~~~g 383 (732)
+++-+.+...++++..+|. .|++||+...
T Consensus 254 ssvlfhp~q~lIlSnsEDk--sirVwDm~kR 282 (1202)
T KOG0292|consen 254 SSVLFHPHQDLILSNSEDK--SIRVWDMTKR 282 (1202)
T ss_pred ceEEecCccceeEecCCCc--cEEEEecccc
Confidence 7777777566888888884 6888888643
|
|
| >KOG3253 consensus Predicted alpha/beta hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0043 Score=66.37 Aligned_cols=168 Identities=16% Similarity=0.108 Sum_probs=99.7
Q ss_pred CccEEEEEcCCCCccCCCCcChhHHHHHHhcCcE--EEEEcccCC-CCCchhHHhcccccCCccHHHHHHHHHHHHHH--
Q 004766 480 SHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAV--FCIANIRGG-GEYGEEWHKGGALAKKQNCFDDFISASEYLIS-- 554 (732)
Q Consensus 480 ~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~--v~~~~~rG~-g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~-- 554 (732)
-.|+++..||.+...-...|.-.|...|...|-+ +..+|++-. |+ .+-....+-++.+.++.+.
T Consensus 175 ~spl~i~aps~p~ap~tSd~~~~wqs~lsl~gevvev~tfdl~n~igG-----------~nI~h~ae~~vSf~r~kvlei 243 (784)
T KOG3253|consen 175 ASPLAIKAPSTPLAPKTSDRMWSWQSRLSLKGEVVEVPTFDLNNPIGG-----------ANIKHAAEYSVSFDRYKVLEI 243 (784)
T ss_pred CCceEEeccCCCCCCccchHHHhHHHHHhhhceeeeeccccccCCCCC-----------cchHHHHHHHHHHhhhhhhhh
Confidence 4689999999883222334444456666655533 334454421 11 1111122333444443222
Q ss_pred cCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCcccccccccCCCCCccccccCCCCCHHHHHHHHhcCcccC
Q 004766 555 AGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHN 634 (732)
Q Consensus 555 ~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~sp~~~ 634 (732)
.+-.--..|.++|+|+|..+++.+...+-|.|-.++...++.+- ...+. -|.++ +..+ .
T Consensus 244 ~gefpha~IiLvGrsmGAlVachVSpsnsdv~V~~vVCigypl~-----~vdgp-----rgirD-E~Ll----------d 302 (784)
T KOG3253|consen 244 TGEFPHAPIILVGRSMGALVACHVSPSNSDVEVDAVVCIGYPLD-----TVDGP-----RGIRD-EALL----------D 302 (784)
T ss_pred hccCCCCceEEEecccCceeeEEeccccCCceEEEEEEeccccc-----CCCcc-----cCCcc-hhhH----------h
Confidence 23334578999999999888887777665555433332222110 01111 02222 2111 1
Q ss_pred CCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeCCCCCCCC
Q 004766 635 VRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVG 705 (732)
Q Consensus 635 ~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~ 705 (732)
.+.|+|++.|.+|.+|++..-.++.+++++. +++++..+++|.+.
T Consensus 303 -------------mk~PVLFV~Gsnd~mcspn~ME~vreKMqA~-------------~elhVI~~adhsma 347 (784)
T KOG3253|consen 303 -------------MKQPVLFVIGSNDHMCSPNSMEEVREKMQAE-------------VELHVIGGADHSMA 347 (784)
T ss_pred -------------cCCceEEEecCCcccCCHHHHHHHHHHhhcc-------------ceEEEecCCCcccc
Confidence 5679999999999999999999999999864 68999999999875
|
|
| >TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171 | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.019 Score=65.29 Aligned_cols=117 Identities=11% Similarity=0.047 Sum_probs=70.5
Q ss_pred cEEEEEEeccCCceEEEEEEECCCCceecc-cccceeeeeEEEEeCCcEEEE-EEecCCCCCCCCCCCCcccCCcccEEE
Q 004766 144 KYLAYALSYSGSDWATIKLMRIEDQIVEAD-ALSWFKFSSIAWTHDSKGFFY-SRYPAPKEGKDMDAGTETDSNLYHEFY 221 (732)
Q Consensus 144 ~~la~~~~~~G~e~~~i~v~dl~~g~~~~~-~~~~~~~~~~~WspDg~~l~y-~~~~~~~~~~~~~~~~~~~~~~~~~v~ 221 (732)
.+|||..+..| +|.+.|..++..... ........+++|||||+.|+| ++... ..+...||
T Consensus 319 tkiAfv~~~~~----~L~~~D~dG~n~~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~--------------~~g~s~vY 380 (912)
T TIGR02171 319 AKLAFRNDVTG----NLAYIDYTKGASRAVEIEDTISVYHPDISPDGKKVAFCTGIEG--------------LPGKSSVY 380 (912)
T ss_pred eeEEEEEcCCC----eEEEEecCCCCceEEEecCCCceecCcCCCCCCEEEEEEeecC--------------CCCCceEE
Confidence 57999987544 899999988764432 222223478999999999999 54332 12345699
Q ss_pred EEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCc-------ceEEEEEEeCCCCCC
Q 004766 222 YHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCD-------PVNKVYYCDLSALPE 281 (732)
Q Consensus 222 ~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~-------~~~~l~~~d~~~~~~ 281 (732)
+.+|.+....-+.+- .. ..-+-.-.+.++|..++....+..+ ....-|.+..+.|+.
T Consensus 381 v~~L~t~~~~~vkl~-ve--~aaiprwrv~e~gdt~ivyv~~a~nn~d~~~~~~~stw~v~f~~gkf 444 (912)
T TIGR02171 381 VRNLNASGSGLVKLP-VE--NAAIPRWRVLENGDTVIVYVSDASNNKDDATFAAYSTWQVPFANGKF 444 (912)
T ss_pred EEehhccCCCceEee-cc--cccccceEecCCCCeEEEEEcCCCCCcchhhhhhcceEEEEecCCCC
Confidence 999988765432221 11 1112223457778776544433221 023467788777653
|
This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown. |
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0033 Score=67.88 Aligned_cols=111 Identities=12% Similarity=0.095 Sum_probs=70.6
Q ss_pred CCEEEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceec-ccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCC
Q 004766 130 GTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEA-DALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDA 208 (732)
Q Consensus 130 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~-~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~ 208 (732)
+.+.+..+..||+|+.||-+....--+...|++|+..+=.... .....-....++|||||++|+-++.|.
T Consensus 524 HGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDR--------- 594 (764)
T KOG1063|consen 524 HGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDR--------- 594 (764)
T ss_pred CceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCc---------
Confidence 4578999999999999998876666666789999976533222 111112347899999999999886543
Q ss_pred CCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEE
Q 004766 209 GTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVM 259 (732)
Q Consensus 209 ~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~ 259 (732)
.+-+|..........-......+...+.+..|+||+++.+-
T Consensus 595 ----------t~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaT 635 (764)
T KOG1063|consen 595 ----------TVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFAT 635 (764)
T ss_pred ----------eEEeeeeecccchhhhhccccccceEEEEcccCcccceeEE
Confidence 33444443221110000012334556678899999999443
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.02 Score=63.45 Aligned_cols=103 Identities=15% Similarity=0.158 Sum_probs=67.9
Q ss_pred EEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcc
Q 004766 133 ALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTET 212 (732)
Q Consensus 133 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~ 212 (732)
.|=.++||-++-+|--+.| .++++|++...+.|.....+.-+..++|.|-.+..|.+-
T Consensus 371 DILDlSWSKn~fLLSSSMD------KTVRLWh~~~~~CL~~F~HndfVTcVaFnPvDDryFiSG---------------- 428 (712)
T KOG0283|consen 371 DILDLSWSKNNFLLSSSMD------KTVRLWHPGRKECLKVFSHNDFVTCVAFNPVDDRYFISG---------------- 428 (712)
T ss_pred hheecccccCCeeEecccc------ccEEeecCCCcceeeEEecCCeeEEEEecccCCCcEeec----------------
Confidence 4567889988754443332 489999999888776554443458899999555554441
Q ss_pred cCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecC
Q 004766 213 DSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEEN 264 (732)
Q Consensus 213 ~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~ 264 (732)
....++.+|.+-.. .+..+. +-...+..++++|||++.++....+
T Consensus 429 --SLD~KvRiWsI~d~---~Vv~W~--Dl~~lITAvcy~PdGk~avIGt~~G 473 (712)
T KOG0283|consen 429 --SLDGKVRLWSISDK---KVVDWN--DLRDLITAVCYSPDGKGAVIGTFNG 473 (712)
T ss_pred --ccccceEEeecCcC---eeEeeh--hhhhhheeEEeccCCceEEEEEecc
Confidence 23457888888542 223332 2234677899999999998876543
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.077 Score=53.68 Aligned_cols=253 Identities=15% Similarity=0.119 Sum_probs=129.4
Q ss_pred EEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecccccceeeeeEEEE-eC-CcEEEEEEecCCCCCCCCCCCCc
Q 004766 134 LIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWFKFSSIAWT-HD-SKGFFYSRYPAPKEGKDMDAGTE 211 (732)
Q Consensus 134 ~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~~~~~~~~~~Ws-pD-g~~l~y~~~~~~~~~~~~~~~~~ 211 (732)
++++..+ +++|.- |+-...++|||+++................+|- +| .+..+.+.
T Consensus 108 VSsv~~~--~~~Ilt-----gsYDg~~riWd~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsa--------------- 165 (423)
T KOG0313|consen 108 VSSVKGA--SKWILT-----GSYDGTSRIWDLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSA--------------- 165 (423)
T ss_pred hhhhccc--CceEEE-----eecCCeeEEEecCCceEEEEecCCcceeeeEEEecCCccceEEEe---------------
Confidence 3455555 566653 233347899999876644333222223455663 22 33333332
Q ss_pred ccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCC-CCCCcccccc--
Q 004766 212 TDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSA-LPEGLEGFKK-- 288 (732)
Q Consensus 212 ~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~-~~~~~~~~~~-- 288 (732)
...+.+.+|...-+.....++.....+..-+.+++..+||..++-.+.+. .-.+| +.+. ..+.++....
T Consensus 166 ---s~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~---~lkiW--s~~~~~~~~~E~~s~~r 237 (423)
T KOG0313|consen 166 ---SMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDT---MLKIW--SVETDEEDELESSSNRR 237 (423)
T ss_pred ---cCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccc---eeeec--ccCCCccccccccchhh
Confidence 22334444444333221111111112233455788889999876555432 23344 4111 1111111100
Q ss_pred ---------cCCCCCcEEeeecccceEE-EEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEe
Q 004766 289 ---------RDGLLPFVKLIDGFDAQYE-VIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAV 358 (732)
Q Consensus 289 ---------~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~ 358 (732)
.+...|+..+....+..-. .|++ ...+| .... ...|..+|+.++.....++.. ..+..+...
T Consensus 238 rk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~y-S~Sw---DHTIk~WDletg~~~~~~~~~---ksl~~i~~~ 309 (423)
T KOG0313|consen 238 RKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIY-SVSW---DHTIKVWDLETGGLKSTLTTN---KSLNCISYS 309 (423)
T ss_pred hhhhhhhhcccccCceEEecccccceeeEEEcC-CCceE-eecc---cceEEEEEeecccceeeeecC---cceeEeecc
Confidence 0111122222222222112 3654 44444 3333 346899999988755555543 457777777
Q ss_pred cCCEEEEEEecCCeeEEEEEeCCCCc--e-eeecccccceeeEeecccCCcEEEEEEecCCCCceEEEEECCCC
Q 004766 359 NLNQMIVSYLSDVKYVLQIRDLKNGS--L-LHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTE 429 (732)
Q Consensus 359 ~~~~l~~~~~~~g~~~l~~~d~~~g~--~-~~~l~~~~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~ 429 (732)
+..+|++....+ ..|++||+.++. . ...+..+...|+.+.++|.....+++.+-. .++-.+|+.+.
T Consensus 310 ~~~~Ll~~gssd--r~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D---~t~klWDvRS~ 378 (423)
T KOG0313|consen 310 PLSKLLASGSSD--RHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYD---NTVKLWDVRST 378 (423)
T ss_pred cccceeeecCCC--CceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecC---CeEEEEEeccC
Confidence 756788777766 578899987653 1 123334566788888898887777665543 35666776554
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.015 Score=60.64 Aligned_cols=218 Identities=11% Similarity=0.065 Sum_probs=123.1
Q ss_pred EEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCc-eeccc----c-cceeeeeEEEEeCCcEEEEEEecCCCCCCCCC
Q 004766 134 LIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQI-VEADA----L-SWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMD 207 (732)
Q Consensus 134 ~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~-~~~~~----~-~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~ 207 (732)
+-...+|..-+++ |+ +|. .-|.|||+..-. ..+.. . .+.-..+.-.+|||+.|+..
T Consensus 422 VcAvtIS~~trhV-yT---gGk--gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivG------------ 483 (705)
T KOG0639|consen 422 VCAVTISNPTRHV-YT---GGK--GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVG------------ 483 (705)
T ss_pred EEEEEecCCccee-Ee---cCC--CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEec------------
Confidence 4456678777766 33 343 479999996422 11111 1 11113567789999999875
Q ss_pred CCCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCccccc
Q 004766 208 AGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFK 287 (732)
Q Consensus 208 ~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~ 287 (732)
++...|-+|+|.++... +-.+.+.....-..++.|||.+..+-.-+++. |.+||+.+..
T Consensus 484 -------GeastlsiWDLAapTpr--ikaeltssapaCyALa~spDakvcFsccsdGn-----I~vwDLhnq~------- 542 (705)
T KOG0639|consen 484 -------GEASTLSIWDLAAPTPR--IKAELTSSAPACYALAISPDAKVCFSCCSDGN-----IAVWDLHNQT------- 542 (705)
T ss_pred -------cccceeeeeeccCCCcc--hhhhcCCcchhhhhhhcCCccceeeeeccCCc-----EEEEEcccce-------
Confidence 34567888999876432 11111111111135788999998766655443 7778887621
Q ss_pred ccCCCCCcEEeeecccce-EEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecCCEEEEE
Q 004766 288 KRDGLLPFVKLIDGFDAQ-YEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVS 366 (732)
Q Consensus 288 ~~~~~~~~~~l~~~~~~~-~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~~l~~~ 366 (732)
.++.+....+.. ...+++||.+|+- ++....|-.+|+.++. .+..++-...|-++...+.+..++.
T Consensus 543 ------~VrqfqGhtDGascIdis~dGtklWT----GGlDntvRcWDlregr---qlqqhdF~SQIfSLg~cP~~dWlav 609 (705)
T KOG0639|consen 543 ------LVRQFQGHTDGASCIDISKDGTKLWT----GGLDNTVRCWDLREGR---QLQQHDFSSQIFSLGYCPTGDWLAV 609 (705)
T ss_pred ------eeecccCCCCCceeEEecCCCceeec----CCCccceeehhhhhhh---hhhhhhhhhhheecccCCCccceee
Confidence 122332222221 2247889988883 4556678889988764 2334432233333444454444445
Q ss_pred EecCCeeEEEEEeCCCCceeeecccccceeeEeecccCCc
Q 004766 367 YLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDS 406 (732)
Q Consensus 367 ~~~~g~~~l~~~d~~~g~~~~~l~~~~g~v~~~~~s~d~~ 406 (732)
..++ +++++.... +.....|.+....|-++-+++-|+
T Consensus 610 GMen--s~vevlh~s-kp~kyqlhlheScVLSlKFa~cGk 646 (705)
T KOG0639|consen 610 GMEN--SNVEVLHTS-KPEKYQLHLHESCVLSLKFAYCGK 646 (705)
T ss_pred eccc--CcEEEEecC-CccceeecccccEEEEEEecccCc
Confidence 5555 356666553 544456766655565666666665
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0012 Score=69.18 Aligned_cols=92 Identities=14% Similarity=0.144 Sum_probs=59.1
Q ss_pred EEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceeccccc-ceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCc
Q 004766 133 ALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALS-WFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTE 211 (732)
Q Consensus 133 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~ 211 (732)
.+..+.|||||++||.+.. ...|+|+|..+-+.+-.... -...-.++||||||+|+..-.|
T Consensus 292 ~in~f~FS~DG~~LA~VSq-----DGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGED------------- 353 (636)
T KOG2394|consen 292 SINEFAFSPDGKYLATVSQ-----DGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGED------------- 353 (636)
T ss_pred cccceeEcCCCceEEEEec-----CceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCc-------------
Confidence 5678999999999998853 34899999987765432111 0013568999999998865322
Q ss_pred ccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEec
Q 004766 212 TDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTE 252 (732)
Q Consensus 212 ~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~Sp 252 (732)
.-|-+|.+. +..+|.....+..|+..++|.|
T Consensus 354 ------DLVtVwSf~----erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 354 ------DLVTVWSFE----ERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred ------ceEEEEEec----cceEEEeccccccceeeEeecc
Confidence 223344443 2335555555566777777765
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0045 Score=65.96 Aligned_cols=117 Identities=13% Similarity=0.111 Sum_probs=69.5
Q ss_pred EEEEeEEECC-CCcEEEEEEeccCCceEEEEEEECCCCce--e---cc---cccceeeeeEEEEeCCcEEEEEEecCCCC
Q 004766 132 AALIKVSVSE-DAKYLAYALSYSGSDWATIKLMRIEDQIV--E---AD---ALSWFKFSSIAWTHDSKGFFYSRYPAPKE 202 (732)
Q Consensus 132 ~~~~~~~~SP-DG~~la~~~~~~G~e~~~i~v~dl~~g~~--~---~~---~~~~~~~~~~~WspDg~~l~y~~~~~~~~ 202 (732)
..+..+.|.| |-.+||...+ ..+|.+|.+..+.. . ++ ++...++.++.|.|=-.-++.+
T Consensus 628 t~vtDl~WdPFD~~rLAVa~d-----dg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~------- 695 (1012)
T KOG1445|consen 628 TLVTDLHWDPFDDERLAVATD-----DGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAV------- 695 (1012)
T ss_pred ceeeecccCCCChHHeeeccc-----CceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhh-------
Confidence 4577888988 7788887753 34778887765431 1 11 1122233455555422111111
Q ss_pred CCCCCCCCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCC
Q 004766 203 GKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALP 280 (732)
Q Consensus 203 ~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~ 280 (732)
+.+...|.+|++.+....-. +.+ +...+++++|||||+.++-+..++ .|.++....++
T Consensus 696 -----------asyd~Ti~lWDl~~~~~~~~--l~g--HtdqIf~~AWSpdGr~~AtVcKDg-----~~rVy~Prs~e 753 (1012)
T KOG1445|consen 696 -----------ASYDSTIELWDLANAKLYSR--LVG--HTDQIFGIAWSPDGRRIATVCKDG-----TLRVYEPRSRE 753 (1012)
T ss_pred -----------hhccceeeeeehhhhhhhhe--ecc--CcCceeEEEECCCCcceeeeecCc-----eEEEeCCCCCC
Confidence 34667899999987643322 222 233567999999999998776543 36777765543
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.011 Score=57.93 Aligned_cols=196 Identities=9% Similarity=0.104 Sum_probs=108.1
Q ss_pred EEEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCcee----cccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCC
Q 004766 132 AALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVE----ADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMD 207 (732)
Q Consensus 132 ~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~----~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~ 207 (732)
..+..++|.|.|.+|+... +..+++++|++|-+.. ++.........+.+|+.|+ ||.+..
T Consensus 217 ~~vrsiSfHPsGefllvgT-----dHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~-lYvTaS---------- 280 (430)
T KOG0640|consen 217 EPVRSISFHPSGEFLLVGT-----DHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGS-LYVTAS---------- 280 (430)
T ss_pred ceeeeEeecCCCceEEEec-----CCCceeEEeccceeEeeecCcccccccceeEEEecCCcc-EEEEec----------
Confidence 4577899999999999664 4568999999987632 2222112247788998886 555432
Q ss_pred CCCcccCCcccEEEEEECCCCCCCCeEEE--ecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCccc
Q 004766 208 AGTETDSNLYHEFYYHFLGTKQSEDILCW--KDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEG 285 (732)
Q Consensus 208 ~~~~~~~~~~~~v~~~~lgt~~~~~~~v~--~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~ 285 (732)
....|.+|+--++ .+|- ....+..-+.+..|+.|||||+-+.. .+-+++|.+.++.
T Consensus 281 --------kDG~IklwDGVS~----rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~-----DS~vkLWEi~t~R----- 338 (430)
T KOG0640|consen 281 --------KDGAIKLWDGVSN----RCVRTIGNAHGGSEVCSAVFTKNGKYILSSGK-----DSTVKLWEISTGR----- 338 (430)
T ss_pred --------cCCcEEeeccccH----HHHHHHHhhcCCceeeeEEEccCCeEEeecCC-----cceeeeeeecCCc-----
Confidence 2224666663222 1221 11122234578899999999975433 3457777777642
Q ss_pred ccccCCCCCcEEeee----cccc--eEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEec
Q 004766 286 FKKRDGLLPFVKLID----GFDA--QYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVN 359 (732)
Q Consensus 286 ~~~~~~~~~~~~l~~----~~~~--~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~ 359 (732)
++...+. +... .-..|.+..+.++|. +.+ ...|+.+|..+.. ...+.+-..+..+..+.-++
T Consensus 339 --------~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~p--DEa-s~slcsWdaRtad-r~~l~slgHn~a~R~i~HSP 406 (430)
T KOG0640|consen 339 --------MLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFP--DEA-SNSLCSWDARTAD-RVALLSLGHNGAVRWIVHSP 406 (430)
T ss_pred --------eEEEEecCCcccchhhhhhhhhcCccceEEcc--ccc-cCceeeccccchh-hhhhcccCCCCCceEEEeCC
Confidence 1222211 0000 011344444444332 222 3468888877665 23344433334555565566
Q ss_pred CCEEEEEEecCCeeEEEE
Q 004766 360 LNQMIVSYLSDVKYVLQI 377 (732)
Q Consensus 360 ~~~l~~~~~~~g~~~l~~ 377 (732)
.+-.+++...|-+-+.|.
T Consensus 407 ~~p~FmTcsdD~raRFWy 424 (430)
T KOG0640|consen 407 VEPAFMTCSDDFRARFWY 424 (430)
T ss_pred CCCceeeecccceeeeee
Confidence 555666777665444443
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.03 Score=53.51 Aligned_cols=236 Identities=12% Similarity=0.132 Sum_probs=125.5
Q ss_pred eEEECC--CCcEEEEEEec----cCCceEEEEEEECCCCceec-----ccccceeeeeEEEEeCCcEEEEEEecCCCCCC
Q 004766 136 KVSVSE--DAKYLAYALSY----SGSDWATIKLMRIEDQIVEA-----DALSWFKFSSIAWTHDSKGFFYSRYPAPKEGK 204 (732)
Q Consensus 136 ~~~~SP--DG~~la~~~~~----~G~e~~~i~v~dl~~g~~~~-----~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~ 204 (732)
+++||| ++ +||.+... .|+ ..|+|.++..+.-+. ++.+ ....++||+...-++++...
T Consensus 13 svqfSPf~~n-rLavAt~q~yGl~G~--G~L~ile~~~~~gi~e~~s~d~~D--~LfdV~Wse~~e~~~~~a~G------ 81 (311)
T KOG0277|consen 13 SVQFSPFVEN-RLAVATAQHYGLAGN--GRLFILEVTDPKGIQECQSYDTED--GLFDVAWSENHENQVIAASG------ 81 (311)
T ss_pred eeEecccccc-hhheeehhhcccccC--ceEEEEecCCCCCeEEEEeeeccc--ceeEeeecCCCcceEEEEec------
Confidence 567888 44 45544321 244 489999996443222 1111 13689999988777777532
Q ss_pred CCCCCCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcc
Q 004766 205 DMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLE 284 (732)
Q Consensus 205 ~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~ 284 (732)
...+.+++++-+ +..+.+|.+.. .-+.++.|++-.+++++.++-.. +-+||..+...
T Consensus 82 ------------DGSLrl~d~~~~-s~Pi~~~kEH~--~EV~Svdwn~~~r~~~ltsSWD~--TiKLW~~~r~~------ 138 (311)
T KOG0277|consen 82 ------------DGSLRLFDLTMP-SKPIHKFKEHK--REVYSVDWNTVRRRIFLTSSWDG--TIKLWDPNRPN------ 138 (311)
T ss_pred ------------CceEEEeccCCC-CcchhHHHhhh--hheEEeccccccceeEEeeccCC--ceEeecCCCCc------
Confidence 224677775433 33344554432 33568899987777776664332 45555443322
Q ss_pred cccccCCCCCcEEeeecccceEE-EEEec-CCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEec-CC
Q 004766 285 GFKKRDGLLPFVKLIDGFDAQYE-VIAND-DTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVN-LN 361 (732)
Q Consensus 285 ~~~~~~~~~~~~~l~~~~~~~~~-~~s~d-g~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~-~~ 361 (732)
.+..........+. .|+|. ++.+...+. +..+-.+|++.+.....+-.+. ..+-...|++ +.
T Consensus 139 ---------Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sg----d~~l~lwdvr~~gk~~~i~ah~--~Eil~cdw~ky~~ 203 (311)
T KOG0277|consen 139 ---------SVQTFNGHNSCIYQAAFSPHIPNLFASASG----DGTLRLWDVRSPGKFMSIEAHN--SEILCCDWSKYNH 203 (311)
T ss_pred ---------ceEeecCCccEEEEEecCCCCCCeEEEccC----CceEEEEEecCCCceeEEEecc--ceeEeecccccCC
Confidence 13333222222333 48884 444433332 2345556665544222222232 3455667776 46
Q ss_pred EEEEEEecCCeeEEEEEeCCCCc-eeeecccccceeeEeecccCCcEEEEEEecCCCCceEEE
Q 004766 362 QMIVSYLSDVKYVLQIRDLKNGS-LLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQ 423 (732)
Q Consensus 362 ~l~~~~~~~g~~~l~~~d~~~g~-~~~~l~~~~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~ 423 (732)
.++++...| ..|+.||+.+=+ .+-+|..+...|..+.+||....++.+. |...-.+++.
T Consensus 204 ~vl~Tg~vd--~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSa-sYDmT~riw~ 263 (311)
T KOG0277|consen 204 NVLATGGVD--NLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASA-SYDMTVRIWD 263 (311)
T ss_pred cEEEecCCC--ceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhc-cccceEEecc
Confidence 788887777 478899986322 1223332344566777777665555443 3333334443
|
|
| >COG3150 Predicted esterase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.006 Score=54.55 Aligned_cols=138 Identities=12% Similarity=-0.015 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCcc----cccccccCCCCCccc--cccC
Q 004766 542 FDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVM----DMLRYHKFTIGHAWV--SDFG 615 (732)
Q Consensus 542 ~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~----d~~~~~~~~~~~~~~--~~~g 615 (732)
....++-++-++.+. .|+ .++|.|.|.|||.+.++..+. -+++++. .|.+ +|..+.. ..+.|+ .+|-
T Consensus 42 p~~a~~ele~~i~~~-~~~-~p~ivGssLGGY~At~l~~~~--Girav~~-NPav~P~e~l~gylg--~~en~ytg~~y~ 114 (191)
T COG3150 42 PQQALKELEKAVQEL-GDE-SPLIVGSSLGGYYATWLGFLC--GIRAVVF-NPAVRPYELLTGYLG--RPENPYTGQEYV 114 (191)
T ss_pred HHHHHHHHHHHHHHc-CCC-CceEEeecchHHHHHHHHHHh--CChhhhc-CCCcCchhhhhhhcC--CCCCCCCcceEE
Confidence 345555566655543 232 499999999999999998874 3455543 3332 2222211 111111 1221
Q ss_pred CCCCHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEeeCC-CCCCCchHHHHHHHHHHHhhcCCCCCCCCCCCEEE
Q 004766 616 CSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADH-DDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIG 694 (732)
Q Consensus 616 ~p~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~-D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 694 (732)
- .+...+.+.. .+++. ...|-.|++-... |....+.++.. .++. ...
T Consensus 115 l--e~~hI~~l~~----~~~~~---------l~~p~~~~lL~qtgDEvLDyr~a~a---~y~~--------------~~~ 162 (191)
T COG3150 115 L--ESRHIATLCV----LQFRE---------LNRPRCLVLLSQTGDEVLDYRQAVA---YYHP--------------CYE 162 (191)
T ss_pred e--ehhhHHHHHH----hhccc---------cCCCcEEEeecccccHHHHHHHHHH---Hhhh--------------hhh
Confidence 0 1111211221 22333 1456677777666 87776655444 3443 244
Q ss_pred EEeCCCCCCCCCchHHHHHHHHHHHHHH
Q 004766 695 RIERKAGHGVGLPTQKMIDEAADRYGFM 722 (732)
Q Consensus 695 ~~~~~~gH~~~~~~~~~~~~~~~~~~fl 722 (732)
.+..|+.|+|..- ...+..+.+|+
T Consensus 163 ~V~dgg~H~F~~f----~~~l~~i~aF~ 186 (191)
T COG3150 163 IVWDGGDHKFKGF----SRHLQRIKAFK 186 (191)
T ss_pred eeecCCCccccch----HHhHHHHHHHh
Confidence 5667899998652 34556777776
|
|
| >COG1770 PtrB Protease II [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.6 Score=51.53 Aligned_cols=252 Identities=14% Similarity=0.058 Sum_probs=133.2
Q ss_pred CCEEEEEEEcCCCCeeEEEEEeCCCCCceEEeCCCCcCCCCCEEEEeEEECCCCcEEEEEEeccCCceEEEEEEECCC--
Q 004766 90 GNKYFYFHNTGLQPQSVLYVQDSLDAKAKVLLDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIED-- 167 (732)
Q Consensus 90 g~~~~~~~~~~~~~~~~l~~r~~~~~~~~~l~D~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~-- 167 (732)
+..+.|....-+.+|+.|-+++..+++. +.|. ++ -...++.|.+||+.+-|+.........+++-..+.+
T Consensus 140 ~~~la~s~D~~G~e~y~lr~kdL~tg~~--~~d~--i~----~~~~~~~Wa~d~~~lfYt~~d~~~rp~kv~~h~~gt~~ 211 (682)
T COG1770 140 HNLLAYSVDVLGDEQYTLRFKDLATGEE--LPDE--IT----NTSGSFAWAADGKTLFYTRLDENHRPDKVWRHRLGTPG 211 (682)
T ss_pred CceEEEEEecccccEEEEEEEecccccc--cchh--hc----ccccceEEecCCCeEEEEEEcCCCCcceEEEEecCCCC
Confidence 3344454444455556565555544321 1111 11 013478999999999999987766566777776655
Q ss_pred Cc--eecccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeE
Q 004766 168 QI--VEADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYI 245 (732)
Q Consensus 168 g~--~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~ 245 (732)
.. .+=+.....-+-++.=|.+.++|++...+ ....++++.+...+..+-.++...+.+-.+
T Consensus 212 ~~d~lvyeE~d~~f~~~v~~s~s~~yi~i~~~~----------------~~tsE~~ll~a~~p~~~p~vv~pr~~g~eY- 274 (682)
T COG1770 212 SSDELVYEEKDDRFFLSVGRSRSEAYIVISLGS----------------HITSEVRLLDADDPEAEPKVVLPRENGVEY- 274 (682)
T ss_pred CcceEEEEcCCCcEEEEeeeccCCceEEEEcCC----------------CcceeEEEEecCCCCCceEEEEEcCCCcEE-
Confidence 21 11111111112334445556666665422 233478888887766655555544432222
Q ss_pred EEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCCCCcEEeeecccc-eEEEEEecCCeEEEEeCCCC
Q 004766 246 FSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDA-QYEVIANDDTVFTFLTNKDA 324 (732)
Q Consensus 246 ~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~s~dg~~l~~~s~~~~ 324 (732)
....-|.+.++.++... .+..|+...+... ...|+.++..... ....++--.++|++....+
T Consensus 275 ---~~eh~~d~f~i~sN~~g-knf~l~~ap~~~~------------~~~w~~~I~h~~~~~l~~~~~f~~~lVl~eR~~- 337 (682)
T COG1770 275 ---SVEHGGDRFYILSNADG-KNFKLVRAPVSAD------------KSNWRELIPHREDVRLEGVDLFADHLVLLERQE- 337 (682)
T ss_pred ---eeeecCcEEEEEecCCC-cceEEEEccCCCC------------hhcCeeeeccCCCceeeeeeeeccEEEEEeccc-
Confidence 23344777777776555 4566776666211 2336666654332 2233444466777665554
Q ss_pred CCceEEEEeCCCCCCceEeccCCCCCceeEEEEec---CCEEEEEEecCC-eeEEEEEeCCCCce
Q 004766 325 PKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVN---LNQMIVSYLSDV-KYVLQIRDLKNGSL 385 (732)
Q Consensus 325 ~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~---~~~l~~~~~~~g-~~~l~~~d~~~g~~ 385 (732)
...+|++.+.++++. ..+.-.++ .......... .+.|-+.+..-. ..+++-+|+++++.
T Consensus 338 glp~v~v~~~~~~~~-~~i~f~~~-ay~~~l~~~~e~~s~~lR~~ysS~ttP~~~~~~dm~t~er 400 (682)
T COG1770 338 GLPRVVVRDRKTGEE-RGIAFDDE-AYSAGLSGNPEFDSDRLRYSYSSMTTPATLFDYDMATGER 400 (682)
T ss_pred CCceEEEEecCCCce-eeEEecch-hhhccccCCCCCCCccEEEEeecccccceeEEeeccCCcE
Confidence 366788888877652 22221111 1111111111 145555555443 45899999998875
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.033 Score=58.21 Aligned_cols=108 Identities=11% Similarity=0.010 Sum_probs=70.7
Q ss_pred eEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCC
Q 004766 136 KVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSN 215 (732)
Q Consensus 136 ~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~ 215 (732)
...|.|.| .||... -...+.|+|.++...++....+...+-+++||||..|+..+.++
T Consensus 412 ~~~fhpsg-~va~Gt-----~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~---------------- 469 (626)
T KOG2106|consen 412 CADFHPSG-VVAVGT-----ATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDN---------------- 469 (626)
T ss_pred EeeccCcc-eEEEee-----ccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEecCCC----------------
Confidence 45688889 677553 23478899999977666554454567899999999999986543
Q ss_pred cccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEe
Q 004766 216 LYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCD 275 (732)
Q Consensus 216 ~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d 275 (732)
.||++.+..+... ...+..... .++..+.||+|++++.-.+ . ..+|..+.
T Consensus 470 ---~iyiy~Vs~~g~~-y~r~~k~~g-s~ithLDwS~Ds~~~~~~S--~---d~eiLyW~ 519 (626)
T KOG2106|consen 470 ---HIYIYRVSANGRK-YSRVGKCSG-SPITHLDWSSDSQFLVSNS--G---DYEILYWK 519 (626)
T ss_pred ---eEEEEEECCCCcE-EEEeeeecC-ceeEEeeecCCCceEEecc--C---ceEEEEEc
Confidence 4677766544322 111211122 5677899999999986443 2 24565563
|
|
| >COG4947 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0036 Score=55.88 Aligned_cols=126 Identities=15% Similarity=0.137 Sum_probs=79.6
Q ss_pred HHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCcccccccccC-CCCCccccccCCCCCHHHHH
Q 004766 546 ISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKF-TIGHAWVSDFGCSEEEEEFY 624 (732)
Q Consensus 546 ~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~-~~~~~~~~~~g~p~~~~~~~ 624 (732)
.+--.|++++.. |.+..+.|.|+||+.++....++|++|..+|+.+|+.|...+..- -.+. .-|.
T Consensus 88 ~AyerYv~eEal--pgs~~~sgcsmGayhA~nfvfrhP~lftkvialSGvYdardffg~yyddD---v~yn--------- 153 (227)
T COG4947 88 RAYERYVIEEAL--PGSTIVSGCSMGAYHAANFVFRHPHLFTKVIALSGVYDARDFFGGYYDDD---VYYN--------- 153 (227)
T ss_pred HHHHHHHHHhhc--CCCccccccchhhhhhhhhheeChhHhhhheeecceeeHHHhccccccCc---eeec---------
Confidence 344557777643 678899999999999999999999999999999999998754420 0000 0111
Q ss_pred HHHhcCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeCCCCC
Q 004766 625 WLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGH 702 (732)
Q Consensus 625 ~~~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH 702 (732)
||.+.+....+--.-......-+.+++|+.|+..+ +..++.+.|.+. .+|..+.+..+-.|
T Consensus 154 -----sP~dylpg~~dp~~l~rlr~~~~vfc~G~e~~~L~--~~~~L~~~l~dK----------qipaw~~~WggvaH 214 (227)
T COG4947 154 -----SPSDYLPGLADPFRLERLRRIDMVFCIGDEDPFLD--NNQHLSRLLSDK----------QIPAWMHVWGGVAH 214 (227)
T ss_pred -----ChhhhccCCcChHHHHHHhhccEEEEecCcccccc--chHHHHHHhccc----------cccHHHHHhccccc
Confidence 33332222100000000012367888999988766 556777777765 67777777654444
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0041 Score=71.04 Aligned_cols=245 Identities=13% Similarity=0.036 Sum_probs=140.7
Q ss_pred EEEeEEECCCCcE----EEEEEeccCCceEEEEEEECCC---Cc---eec-ccccceeeeeEEEEeCCcEEEEEEecCCC
Q 004766 133 ALIKVSVSEDAKY----LAYALSYSGSDWATIKLMRIED---QI---VEA-DALSWFKFSSIAWTHDSKGFFYSRYPAPK 201 (732)
Q Consensus 133 ~~~~~~~SPDG~~----la~~~~~~G~e~~~i~v~dl~~---g~---~~~-~~~~~~~~~~~~WspDg~~l~y~~~~~~~ 201 (732)
.+..+.|++-|.. || +|.|...|-+||... +. .+. .......+.++.|.+...-++-+.
T Consensus 66 rF~kL~W~~~g~~~~GlIa-----GG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASG----- 135 (1049)
T KOG0307|consen 66 RFNKLAWGSYGSHSHGLIA-----GGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASG----- 135 (1049)
T ss_pred cceeeeecccCCCccceee-----ccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeecc-----
Confidence 3557889998887 44 677778899998754 22 111 111112245688888876343321
Q ss_pred CCCCCCCCCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCC
Q 004766 202 EGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPE 281 (732)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~ 281 (732)
....+|++||+...... .-+.....+..+..++|...-.+|+.+.+.. ...-++|+...
T Consensus 136 -------------a~~geI~iWDlnn~~tP--~~~~~~~~~~eI~~lsWNrkvqhILAS~s~s----g~~~iWDlr~~-- 194 (1049)
T KOG0307|consen 136 -------------ADDGEILIWDLNKPETP--FTPGSQAPPSEIKCLSWNRKVSHILASGSPS----GRAVIWDLRKK-- 194 (1049)
T ss_pred -------------CCCCcEEEeccCCcCCC--CCCCCCCCcccceEeccchhhhHHhhccCCC----CCceeccccCC--
Confidence 22346999999753221 1110111122344677777666765554322 34556787652
Q ss_pred CcccccccCCCCCcEEeeeccc---ceEEEEEecCCe-EEEEeCCCCCCceEEEEeCCCCC-CceEeccCCCCCceeEEE
Q 004766 282 GLEGFKKRDGLLPFVKLIDGFD---AQYEVIANDDTV-FTFLTNKDAPKYKIIRVDLKEPN-DWFEVIPEAERDVLESAT 356 (732)
Q Consensus 282 ~~~~~~~~~~~~~~~~l~~~~~---~~~~~~s~dg~~-l~~~s~~~~~~~~l~~~d~~~~~-~~~~l~~~~~~~~l~~~~ 356 (732)
.++..+..... .....|.|++.. +++.++.+ ..--|-.+|+.-.. ..+++..|. .-+-++.
T Consensus 195 -----------~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd-~~PviqlWDlR~assP~k~~~~H~--~Gilsls 260 (1049)
T KOG0307|consen 195 -----------KPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDD-SAPVIQLWDLRFASSPLKILEGHQ--RGILSLS 260 (1049)
T ss_pred -----------CcccccccCCCccceeeeeeCCCCceeeeeecCCC-CCceeEeecccccCCchhhhcccc--cceeeec
Confidence 12333333222 122358897654 44444443 34456677765433 234443444 4466788
Q ss_pred Eec-CCEEEEEEecCCeeEEEEEeCCCCceeeecccccceeeEeecccCCcEEEEEEecCCCCceEEEEE
Q 004766 357 AVN-LNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCN 425 (732)
Q Consensus 357 ~~~-~~~l~~~~~~~g~~~l~~~d~~~g~~~~~l~~~~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d 425 (732)
|.. |.++++++..| .++..|+.++|+.+..+......+..+.+.+...- +|+.+++...-.||-+-
T Consensus 261 Wc~~D~~lllSsgkD--~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~-~~A~asfdgkI~I~sl~ 327 (1049)
T KOG0307|consen 261 WCPQDPRLLLSSGKD--NRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPS-VMAAASFDGKISIYSLQ 327 (1049)
T ss_pred cCCCCchhhhcccCC--CCeeEecCCCceEeeecCCCCcceeeeeecCCCcc-hhhhheeccceeeeeee
Confidence 886 45889998888 48999999999987777654334556667665552 45667777766666554
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.065 Score=52.60 Aligned_cols=196 Identities=12% Similarity=0.094 Sum_probs=100.5
Q ss_pred EEEeEEECCCCcEEEEEEeccCCceEEEEEEECCC-Cceecccc--cceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCC
Q 004766 133 ALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIED-QIVEADAL--SWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAG 209 (732)
Q Consensus 133 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~-g~~~~~~~--~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~ 209 (732)
+|+.++|||.-..++... +=..++++|+++. |...+... .....-..+||.||..+|....+.
T Consensus 29 sIS~l~FSP~~~~~~~A~----SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk---------- 94 (347)
T KOG0647|consen 29 SISALAFSPQADNLLAAG----SWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDK---------- 94 (347)
T ss_pred chheeEeccccCceEEec----ccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCC----------
Confidence 477999999443333332 2235899999875 45433211 111235789999998887765443
Q ss_pred CcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCccccccc
Q 004766 210 TETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKR 289 (732)
Q Consensus 210 ~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~ 289 (732)
++.+|+|.+++...+-.. + .-+-.+.|-+...+-.+... .. ...|-.+|....
T Consensus 95 ---------~~k~wDL~S~Q~~~v~~H---d--~pvkt~~wv~~~~~~cl~TG-SW--DKTlKfWD~R~~---------- 147 (347)
T KOG0647|consen 95 ---------QAKLWDLASGQVSQVAAH---D--APVKTCHWVPGMNYQCLVTG-SW--DKTLKFWDTRSS---------- 147 (347)
T ss_pred ---------ceEEEEccCCCeeeeeec---c--cceeEEEEecCCCcceeEec-cc--ccceeecccCCC----------
Confidence 578899998865433222 1 22335666655553222211 11 234777786642
Q ss_pred CCCCCcEEeeecccceEEEEEecC-CeEEEEeCCCCCCceEEEEeCCCCC-CceEeccCCCCCceeEEEEecCCEEEEEE
Q 004766 290 DGLLPFVKLIDGFDAQYEVIANDD-TVFTFLTNKDAPKYKIIRVDLKEPN-DWFEVIPEAERDVLESATAVNLNQMIVSY 367 (732)
Q Consensus 290 ~~~~~~~~l~~~~~~~~~~~s~dg-~~l~~~s~~~~~~~~l~~~d~~~~~-~~~~l~~~~~~~~l~~~~~~~~~~l~~~~ 367 (732)
.++..+. -.+..|. -|- .-+++++.. ...|..++|+++. ..+..-.+ -...+..++.+.++..++..
T Consensus 148 ---~pv~t~~-LPeRvYa---~Dv~~pm~vVata---~r~i~vynL~n~~te~k~~~Sp-Lk~Q~R~va~f~d~~~~alG 216 (347)
T KOG0647|consen 148 ---NPVATLQ-LPERVYA---ADVLYPMAVVATA---ERHIAVYNLENPPTEFKRIESP-LKWQTRCVACFQDKDGFALG 216 (347)
T ss_pred ---Ceeeeee-ccceeee---hhccCceeEEEec---CCcEEEEEcCCCcchhhhhcCc-ccceeeEEEEEecCCceEee
Confidence 1121111 1111121 111 122222221 2248888886653 23333222 24667788888765455555
Q ss_pred ecCCeeEEEEEeC
Q 004766 368 LSDVKYVLQIRDL 380 (732)
Q Consensus 368 ~~~g~~~l~~~d~ 380 (732)
.-.|+-.|.-+|.
T Consensus 217 siEGrv~iq~id~ 229 (347)
T KOG0647|consen 217 SIEGRVAIQYIDD 229 (347)
T ss_pred eecceEEEEecCC
Confidence 6666555554443
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.18 Score=51.42 Aligned_cols=115 Identities=17% Similarity=0.196 Sum_probs=77.5
Q ss_pred EEEEeEEECCCCcE-EEEEEeccCCceEEEEEEECCCCcee-c-------ccccceeeeeEEEEeCCcEEEEEEecCCCC
Q 004766 132 AALIKVSVSEDAKY-LAYALSYSGSDWATIKLMRIEDQIVE-A-------DALSWFKFSSIAWTHDSKGFFYSRYPAPKE 202 (732)
Q Consensus 132 ~~~~~~~~SPDG~~-la~~~~~~G~e~~~i~v~dl~~g~~~-~-------~~~~~~~~~~~~WspDg~~l~y~~~~~~~~ 202 (732)
..+-.+.|+|-... || +|+|..+|.||.+..+... . .....-+.+.++|.|--.-++.+
T Consensus 82 ~~vLDi~w~PfnD~vIA-----SgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLls------- 149 (472)
T KOG0303|consen 82 APVLDIDWCPFNDCVIA-----SGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLS------- 149 (472)
T ss_pred ccccccccCccCCceee-----cCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhh-------
Confidence 44567789996554 44 5788899999998654311 1 11111235778999876666655
Q ss_pred CCCCCCCCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCC
Q 004766 203 GKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSAL 279 (732)
Q Consensus 203 ~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~ 279 (732)
++..+.|..|++||+.. ++ +.. ++..+.+++|+-||.+++-... ...|.++|..++
T Consensus 150 -----------ag~Dn~v~iWnv~tgea---li-~l~-hpd~i~S~sfn~dGs~l~Ttck-----DKkvRv~dpr~~ 205 (472)
T KOG0303|consen 150 -----------AGSDNTVSIWNVGTGEA---LI-TLD-HPDMVYSMSFNRDGSLLCTTCK-----DKKVRVIDPRRG 205 (472)
T ss_pred -----------ccCCceEEEEeccCCce---ee-ecC-CCCeEEEEEeccCCceeeeecc-----cceeEEEcCCCC
Confidence 34567899999999853 22 222 5667889999999999876553 245888887764
|
|
| >PF00151 Lipase: Lipase; InterPro: IPR013818 Triglyceride lipases (3 | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.00084 Score=69.72 Aligned_cols=113 Identities=12% Similarity=0.059 Sum_probs=64.1
Q ss_pred CCCccEEEEEcCCCCccCCCCcChhH-HHHHHh--cCcEEEEEcccCCCCCchhHHhcccccCCccHHHHHHHHHHHHHH
Q 004766 478 DGSHPCLLYGYGGFNISVTPSFSVSR-TILMRH--LGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLIS 554 (732)
Q Consensus 478 ~~~~P~vv~~hG~~~~~~~~~~~~~~-~~~l~~--~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~ 554 (732)
+...|++|++||..+......+...+ ..++.. .++.|+++|...+... .+..+... -...-.-+...+..|.+
T Consensus 68 n~~~pt~iiiHGw~~~~~~~~~~~~~~~all~~~~~d~NVI~VDWs~~a~~--~Y~~a~~n--~~~vg~~la~~l~~L~~ 143 (331)
T PF00151_consen 68 NPSKPTVIIIHGWTGSGSSESWIQDMIKALLQKDTGDYNVIVVDWSRGASN--NYPQAVAN--TRLVGRQLAKFLSFLIN 143 (331)
T ss_dssp -TTSEEEEEE--TT-TT-TTTHHHHHHHHHHCC--S-EEEEEEE-HHHHSS---HHHHHHH--HHHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEcCcCCcccchhHHHHHHHHHHhhccCCceEEEEcchhhccc--cccchhhh--HHHHHHHHHHHHHHHHh
Confidence 56789999999987766334444433 456665 5899999998643321 12222111 01112334445777775
Q ss_pred cCCCCCCcEEEEecChhHHHHHHHHhhCCC--eeeEEEEcCC
Q 004766 555 AGYTQSRKLCIEGGSNGGLLVGACINQRPD--LFGCALAHVG 594 (732)
Q Consensus 555 ~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~--~f~a~v~~~p 594 (732)
...+++++|-|+|||.|+.+++.+...... .+..+...-|
T Consensus 144 ~~g~~~~~ihlIGhSLGAHvaG~aG~~~~~~~ki~rItgLDP 185 (331)
T PF00151_consen 144 NFGVPPENIHLIGHSLGAHVAGFAGKYLKGGGKIGRITGLDP 185 (331)
T ss_dssp HH---GGGEEEEEETCHHHHHHHHHHHTTT---SSEEEEES-
T ss_pred hcCCChhHEEEEeeccchhhhhhhhhhccCcceeeEEEecCc
Confidence 555789999999999999999999887554 4555544433
|
1.1.3 from EC) are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. At least three tissue-specific isozymes exist in higher vertebrates, pancreatic, hepatic and gastric/lingual. These lipases are closely related to each other and to lipoprotein lipase (3.1.1.34 from EC), which hydrolyses triglycerides of chylomicrons and very low density lipoproteins (VLDL) []. The most conserved region in all these proteins is centred around a serine residue which has been shown [] to participate, with an histidine and an aspartic acid residue, in a charge relay system. Such a region is also present in lipases of prokaryotic origin and in lecithin-cholesterol acyltransferase (2.3.1.43 from EC) (LCAT) [], which catalyzes fatty acid transfer between phosphatidylcholine and cholesterol.; PDB: 1LPB_B 1LPA_B 1N8S_A 1GPL_A 1W52_X 2PVS_B 2OXE_B 1BU8_A 2PPL_A 1ETH_A .... |
| >TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171 | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.041 Score=62.76 Aligned_cols=84 Identities=11% Similarity=0.172 Sum_probs=49.4
Q ss_pred EEEEEeCCCCCceEE-eCCCCcCCCCCEEEEeEEECCCCcEEEEEEeccC-CceEEEEEEECCCCc--eecccccceeee
Q 004766 106 VLYVQDSLDAKAKVL-LDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSG-SDWATIKLMRIEDQI--VEADALSWFKFS 181 (732)
Q Consensus 106 ~l~~r~~~~~~~~~l-~D~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G-~e~~~i~v~dl~~g~--~~~~~~~~~~~~ 181 (732)
.|.+.+..+..++++ +..+ ..+-.|.|||||++|||.++..+ +....|||.||.+.. .+....+++ .
T Consensus 330 ~L~~~D~dG~n~~~ve~~~~-------~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~ve~a--a 400 (912)
T TIGR02171 330 NLAYIDYTKGASRAVEIEDT-------ISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLPVENA--A 400 (912)
T ss_pred eEEEEecCCCCceEEEecCC-------CceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEeecccc--c
Confidence 355555444455544 3322 22568999999999999555554 123679999998643 333333443 3
Q ss_pred eEEE--EeCCc-EEEEEEec
Q 004766 182 SIAW--THDSK-GFFYSRYP 198 (732)
Q Consensus 182 ~~~W--spDg~-~l~y~~~~ 198 (732)
-+.| ..+|+ .|+|++..
T Consensus 401 iprwrv~e~gdt~ivyv~~a 420 (912)
T TIGR02171 401 IPRWRVLENGDTVIVYVSDA 420 (912)
T ss_pred ccceEecCCCCeEEEEEcCC
Confidence 3444 55554 56777653
|
This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown. |
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.096 Score=57.85 Aligned_cols=195 Identities=11% Similarity=0.048 Sum_probs=99.8
Q ss_pred ECCCCcEEEEEEeccCCceEEEEEEECCCCceecccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCCccc
Q 004766 139 VSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYH 218 (732)
Q Consensus 139 ~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~~~~ 218 (732)
++|||+.+- . .......+.++|.++-+......-+.+.....++|||++++.++.+.. ...
T Consensus 200 lpnDGk~l~-~---~~ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE---------------~G~ 260 (635)
T PRK02888 200 LPNDGKDLD-D---PKKYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSE---------------EGV 260 (635)
T ss_pred cCCCCCEee-c---ccceeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcc---------------cCc
Confidence 789999762 2 123345788899998765432222223467899999999998875431 122
Q ss_pred EEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCCCCcEE-
Q 004766 219 EFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVK- 297 (732)
Q Consensus 219 ~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~- 297 (732)
.+...+.++ .....+|.... -..+.+||++..+. .+.+-++|..+..+. ......
T Consensus 261 tl~em~a~e--~d~~vvfni~~------iea~vkdGK~~~V~-------gn~V~VID~~t~~~~---------~~~v~~y 316 (635)
T PRK02888 261 TLAEMMAAE--RDWVVVFNIAR------IEEAVKAGKFKTIG-------GSKVPVVDGRKAANA---------GSALTRY 316 (635)
T ss_pred ceeeecccc--CceEEEEchHH------HHHhhhCCCEEEEC-------CCEEEEEECCccccC---------CcceEEE
Confidence 233333222 12222332110 12457899987752 245788887751000 011222
Q ss_pred eeecccceEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCC-------c-eEeccCC--CCCceeEEEEecCCEEEEEE
Q 004766 298 LIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPND-------W-FEVIPEA--ERDVLESATAVNLNQMIVSY 367 (732)
Q Consensus 298 l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~-------~-~~l~~~~--~~~~l~~~~~~~~~~l~~~~ 367 (732)
+..+....-..+||||+++|+ ++... ..+-.+|+++... . ..++.+- ....+ ...+.+++..|.+.
T Consensus 317 IPVGKsPHGV~vSPDGkylyV-anklS--~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPL-HTaFDg~G~aytsl 392 (635)
T PRK02888 317 VPVPKNPHGVNTSPDGKYFIA-NGKLS--PTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPL-HTAFDGRGNAYTTL 392 (635)
T ss_pred EECCCCccceEECCCCCEEEE-eCCCC--CcEEEEEChhhhhhhhccCCccceEEEeeccCCCcc-eEEECCCCCEEEeE
Confidence 222222111248999998885 44433 3466677765331 0 1111111 00111 12344445566655
Q ss_pred ecCCeeEEEEEeCCC
Q 004766 368 LSDVKYVLQIRDLKN 382 (732)
Q Consensus 368 ~~~g~~~l~~~d~~~ 382 (732)
--+ ++|..|++++
T Consensus 393 f~d--sqv~kwn~~~ 405 (635)
T PRK02888 393 FLD--SQIVKWNIEA 405 (635)
T ss_pred eec--ceeEEEehHH
Confidence 555 6899999864
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.11 Score=51.54 Aligned_cols=207 Identities=9% Similarity=-0.008 Sum_probs=102.4
Q ss_pred EEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecc-cccc-eeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCc
Q 004766 134 LIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEAD-ALSW-FKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTE 211 (732)
Q Consensus 134 ~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~-~~~~-~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~ 211 (732)
+++++|.||.+.|+.+.+.. ..|+.++++ |+.+.. ...+ .++-++++.-+++ ++.+.
T Consensus 24 ~SGLTy~pd~~tLfaV~d~~----~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~-~vl~~--------------- 82 (248)
T PF06977_consen 24 LSGLTYNPDTGTLFAVQDEP----GEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGR-YVLSE--------------- 82 (248)
T ss_dssp EEEEEEETTTTEEEEEETTT----TEEEEEETT---EEEEEE-SS-SSEEEEEE-STTE-EEEEE---------------
T ss_pred ccccEEcCCCCeEEEEECCC----CEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCE-EEEEE---------------
Confidence 78999999999887776543 368889975 665432 2222 2356788986664 44432
Q ss_pred ccCCcccEEEEEECCCCCCC----CeEEEe--cC--CCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCc
Q 004766 212 TDSNLYHEFYYHFLGTKQSE----DILCWK--DP--EHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGL 283 (732)
Q Consensus 212 ~~~~~~~~v~~~~lgt~~~~----~~~v~~--~~--~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~ 283 (732)
.+.++++.+++...... +..-++ .. .+. -+.+++|+|.++.+++...+.. ..||-++.......+
T Consensus 83 ---Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~-G~EGla~D~~~~~L~v~kE~~P---~~l~~~~~~~~~~~~ 155 (248)
T PF06977_consen 83 ---ERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNK-GFEGLAYDPKTNRLFVAKERKP---KRLYEVNGFPGGFDL 155 (248)
T ss_dssp ---TTTTEEEEEEE----TT--EEEEEEEE---S---SS---EEEEEETTTTEEEEEEESSS---EEEEEEESTT-SS--
T ss_pred ---cCCCcEEEEEEeccccccchhhceEEecccccCCCc-ceEEEEEcCCCCEEEEEeCCCC---hhhEEEccccCccce
Confidence 24457777777432211 101111 11 222 2468999999888877654433 567777752111000
Q ss_pred ccccccCCCCCcEE-eeecccceEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCC-CceEeccCC-----CCCceeEEE
Q 004766 284 EGFKKRDGLLPFVK-LIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPN-DWFEVIPEA-----ERDVLESAT 356 (732)
Q Consensus 284 ~~~~~~~~~~~~~~-l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~-~~~~l~~~~-----~~~~l~~~~ 356 (732)
... ....+.. ...-.+.+-..+.|..++||+++... ..|..+|.++.- ....|.... .-..-++++
T Consensus 156 ~~~----~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es---~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa 228 (248)
T PF06977_consen 156 FVS----DDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDES---RLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIA 228 (248)
T ss_dssp EEE----E-HHHH-HT--SS---EEEEETTTTEEEEEETTT---TEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEE
T ss_pred eec----cccccccccceeccccceEEcCCCCeEEEEECCC---CeEEEECCCCCEEEEEEeCCcccCcccccCCccEEE
Confidence 000 0000000 00011111223678888999998864 368888855432 122333211 013467899
Q ss_pred EecCCEEEEEEecCCeeEEEEE
Q 004766 357 AVNLNQMIVSYLSDVKYVLQIR 378 (732)
Q Consensus 357 ~~~~~~l~~~~~~~g~~~l~~~ 378 (732)
+.+++.||+....+ .+|++
T Consensus 229 ~d~~G~LYIvsEpN---lfy~f 247 (248)
T PF06977_consen 229 FDPDGNLYIVSEPN---LFYRF 247 (248)
T ss_dssp E-TT--EEEEETTT---EEEEE
T ss_pred ECCCCCEEEEcCCc---eEEEe
Confidence 98878888887655 55654
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >KOG4840 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.021 Score=53.52 Aligned_cols=107 Identities=13% Similarity=0.133 Sum_probs=75.9
Q ss_pred EEEEEcCCCCccCC-CCcChhHHHHHHhcCcEEEEEcccCCC-CCchhHHhcccccCCccHHHHHHHHHHHHHHcCCCCC
Q 004766 483 CLLYGYGGFNISVT-PSFSVSRTILMRHLGAVFCIANIRGGG-EYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQS 560 (732)
Q Consensus 483 ~vv~~hG~~~~~~~-~~~~~~~~~~l~~~G~~v~~~~~rG~g-~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~ 560 (732)
..|..-||.+.... -.|-......|++.+|..+.+-.|-+- +||.-- . ....+|+..++++++-.++.
T Consensus 37 ~~vvfiGGLgdgLl~~~y~~~L~~~lde~~wslVq~q~~Ssy~G~Gt~s-------l-k~D~edl~~l~~Hi~~~~fS-- 106 (299)
T KOG4840|consen 37 VKVVFIGGLGDGLLICLYTTMLNRYLDENSWSLVQPQLRSSYNGYGTFS-------L-KDDVEDLKCLLEHIQLCGFS-- 106 (299)
T ss_pred EEEEEEcccCCCccccccHHHHHHHHhhccceeeeeecccccccccccc-------c-cccHHHHHHHHHHhhccCcc--
Confidence 44444466665433 233444556677799999999998653 244321 1 23568999999999888764
Q ss_pred CcEEEEecChhHHHHHHHHhh--CCCeeeEEEEcCCccccc
Q 004766 561 RKLCIEGGSNGGLLVGACINQ--RPDLFGCALAHVGVMDML 599 (732)
Q Consensus 561 ~~i~i~G~S~GG~l~~~~~~~--~p~~f~a~v~~~p~~d~~ 599 (732)
..|+++|||-|.-=++.++++ -|...+|+|+++|+.|..
T Consensus 107 t~vVL~GhSTGcQdi~yYlTnt~~~r~iraaIlqApVSDrE 147 (299)
T KOG4840|consen 107 TDVVLVGHSTGCQDIMYYLTNTTKDRKIRAAILQAPVSDRE 147 (299)
T ss_pred cceEEEecCccchHHHHHHHhccchHHHHHHHHhCccchhh
Confidence 389999999999888887754 255689999999999864
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.084 Score=57.89 Aligned_cols=237 Identities=14% Similarity=0.167 Sum_probs=124.4
Q ss_pred EEEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecccccceeeeeEEEEeC---Cc-EEEEEEecCCCCCCCCC
Q 004766 132 AALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWFKFSSIAWTHD---SK-GFFYSRYPAPKEGKDMD 207 (732)
Q Consensus 132 ~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~~~~~~~~~~WspD---g~-~l~y~~~~~~~~~~~~~ 207 (732)
-.+.++.+++|+.-+.++. .+ ..+.|||+..-+.+.........-+.+..++ ++ ..+++..
T Consensus 193 S~vtsL~~~~d~~~~ls~~----RD-kvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG---------- 257 (775)
T KOG0319|consen 193 SAVTSLAFSEDSLELLSVG----RD-KVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAG---------- 257 (775)
T ss_pred hheeeeeeccCCceEEEec----cC-cEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEec----------
Confidence 4578899999998877663 22 5899999965543211111001133444444 33 2444432
Q ss_pred CCCcccCCcccEEEEEECCCCCCCCeEEEe--cCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCccc
Q 004766 208 AGTETDSNLYHEFYYHFLGTKQSEDILCWK--DPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEG 285 (732)
Q Consensus 208 ~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~--~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~ 285 (732)
....+.+++..++.. ++. .++.+..........+++.+++.. ...++++|.++..
T Consensus 258 --------~~g~~~~~d~es~~~----~~~~~~~~~~e~~~~~~~~~~~~~l~vta------eQnl~l~d~~~l~----- 314 (775)
T KOG0319|consen 258 --------GSGVVQYWDSESGKC----VYKQRQSDSEEIDHLLAIESMSQLLLVTA------EQNLFLYDEDELT----- 314 (775)
T ss_pred --------CCceEEEEecccchh----hhhhccCCchhhhcceeccccCceEEEEc------cceEEEEEccccE-----
Confidence 222355555544321 110 011111222334445666665543 2457888876632
Q ss_pred ccccCCCCCcEEeeecccceE---EEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecCCE
Q 004766 286 FKKRDGLLPFVKLIDGFDAQY---EVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQ 362 (732)
Q Consensus 286 ~~~~~~~~~~~~l~~~~~~~~---~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~~ 362 (732)
..+.++ ++..++ .++.|+.+++++.+|. +..++| ++.+.. .. +++.-. ..+-++.....+.
T Consensus 315 --------i~k~iv-G~ndEI~Dm~~lG~e~~~laVATNs--~~lr~y--~~~~~~-c~-ii~GH~-e~vlSL~~~~~g~ 378 (775)
T KOG0319|consen 315 --------IVKQIV-GYNDEILDMKFLGPEESHLAVATNS--PELRLY--TLPTSY-CQ-IIPGHT-EAVLSLDVWSSGD 378 (775)
T ss_pred --------Eehhhc-CCchhheeeeecCCccceEEEEeCC--CceEEE--ecCCCc-eE-EEeCch-hheeeeeecccCc
Confidence 122222 343332 3578888999998885 456666 777765 34 444332 4454555433366
Q ss_pred EEEEEecCCeeEEEEEeCCCCce----eeecccccceeeEeecccCCcEEEEEEecCCCCceEEEEECC
Q 004766 363 MIVSYLSDVKYVLQIRDLKNGSL----LHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLK 427 (732)
Q Consensus 363 l~~~~~~~g~~~l~~~d~~~g~~----~~~l~~~~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~ 427 (732)
++++...|..-.||++ +++.. +.....+..++..+..+..+..++++.++.. ++-.+++.
T Consensus 379 llat~sKD~svilWr~--~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~---tlK~W~l~ 442 (775)
T KOG0319|consen 379 LLATGSKDKSVILWRL--NNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDC---TLKLWDLP 442 (775)
T ss_pred EEEEecCCceEEEEEe--cCCcchhhhhhhhcccccccceeeecccCccEEEEecCCc---eEEEecCC
Confidence 8888888865555555 32322 1122223456666677766777777666543 45555544
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.031 Score=58.62 Aligned_cols=143 Identities=14% Similarity=0.122 Sum_probs=86.0
Q ss_pred eEEECCCCcEEEEEEeccC---Cc---eEEEEEEECCCCce-ec-ccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCC
Q 004766 136 KVSVSEDAKYLAYALSYSG---SD---WATIKLMRIEDQIV-EA-DALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMD 207 (732)
Q Consensus 136 ~~~~SPDG~~la~~~~~~G---~e---~~~i~v~dl~~g~~-~~-~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~ 207 (732)
.+.|-+.|++|++.+.+.- .. ..+||++++..... +. +..+. +..++|.|++++|+.++..
T Consensus 227 qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~~~~~p--Vhdf~W~p~S~~F~vi~g~--------- 295 (561)
T COG5354 227 QLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEKDLKDP--VHDFTWEPLSSRFAVISGY--------- 295 (561)
T ss_pred EEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceecccccc--ceeeeecccCCceeEEecc---------
Confidence 3569999999999876432 11 14899999874332 11 22222 4889999999999998632
Q ss_pred CCCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCccccc
Q 004766 208 AGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFK 287 (732)
Q Consensus 208 ~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~ 287 (732)
.+..+-.+++.+. +++-.+.... ..+.|||.++||++..-+.. ...+-++|..+.-
T Consensus 296 --------~pa~~s~~~lr~N-----l~~~~Pe~~r--NT~~fsp~~r~il~agF~nl--~gni~i~~~~~rf------- 351 (561)
T COG5354 296 --------MPASVSVFDLRGN-----LRFYFPEQKR--NTIFFSPHERYILFAGFDNL--QGNIEIFDPAGRF------- 351 (561)
T ss_pred --------cccceeecccccc-----eEEecCCccc--ccccccCcccEEEEecCCcc--ccceEEeccCCce-------
Confidence 2334555555432 3443433221 24668999999999765544 3345556665520
Q ss_pred ccCCCCCcEEeeecccceEEEEEecCCeEEEE
Q 004766 288 KRDGLLPFVKLIDGFDAQYEVIANDDTVFTFL 319 (732)
Q Consensus 288 ~~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~ 319 (732)
. ...-+.+....++-|+|||+.++.-
T Consensus 352 -----~-~~~~~~~~n~s~~~wspd~qF~~~~ 377 (561)
T COG5354 352 -----K-VAGAFNGLNTSYCDWSPDGQFYDTD 377 (561)
T ss_pred -----E-EEEEeecCCceEeeccCCceEEEec
Confidence 0 1112234445666799998755543
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.19 Score=50.74 Aligned_cols=199 Identities=15% Similarity=0.160 Sum_probs=105.3
Q ss_pred EEEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceeccc-ccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCC
Q 004766 132 AALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADA-LSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGT 210 (732)
Q Consensus 132 ~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~-~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~ 210 (732)
..+..++|.+ ..++|.+-. .+ -.|+++|-....+.... ....+...++|-|-+..-+.+....
T Consensus 99 ~dlr~~aWhq--H~~~fava~--nd-dvVriy~ksst~pt~Lks~sQrnvtclawRPlsaselavgCr~----------- 162 (445)
T KOG2139|consen 99 IDLRGVAWHQ--HIIAFAVAT--ND-DVVRIYDKSSTCPTKLKSVSQRNVTCLAWRPLSASELAVGCRA----------- 162 (445)
T ss_pred cceeeEeech--hhhhhhhhc--cC-cEEEEeccCCCCCceecchhhcceeEEEeccCCcceeeeeecc-----------
Confidence 3467888988 456666532 22 47888887664322111 1111347899999875433332211
Q ss_pred cccCCcccEEEEEECCC----------CCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCC
Q 004766 211 ETDSNLYHEFYYHFLGT----------KQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALP 280 (732)
Q Consensus 211 ~~~~~~~~~v~~~~lgt----------~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~ 280 (732)
-|..|.... .......|+..+.+ ..+.++.|.+||..++-.+- + .+.+.++|.+++.
T Consensus 163 --------gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~-g---sssi~iWdpdtg~ 229 (445)
T KOG2139|consen 163 --------GICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASF-G---SSSIMIWDPDTGQ 229 (445)
T ss_pred --------eeEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeeccc-C---cceEEEEcCCCCC
Confidence 011111110 01112234555443 45678999999998865443 2 3557888888753
Q ss_pred CCcccccccCCCCCcEEeeecccc-eEEEEEecCCeEEEEeCCCCCCceEEEE-eCCCCCCceEeccCCCCCceeEEEEe
Q 004766 281 EGLEGFKKRDGLLPFVKLIDGFDA-QYEVIANDDTVFTFLTNKDAPKYKIIRV-DLKEPNDWFEVIPEAERDVLESATAV 358 (732)
Q Consensus 281 ~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~s~dg~~l~~~s~~~~~~~~l~~~-d~~~~~~~~~l~~~~~~~~l~~~~~~ 358 (732)
..|++. .+... ....|||||+.|+..+-+ + .++|+.. ..-+.+.|. .. . ..++...|+
T Consensus 230 -----------~~pL~~--~glgg~slLkwSPdgd~lfaAt~d-a-vfrlw~e~q~wt~erw~--lg-s--grvqtacWs 289 (445)
T KOG2139|consen 230 -----------KIPLIP--KGLGGFSLLKWSPDGDVLFAATCD-A-VFRLWQENQSWTKERWI--LG-S--GRVQTACWS 289 (445)
T ss_pred -----------cccccc--cCCCceeeEEEcCCCCEEEEeccc-c-eeeeehhcccceeccee--cc-C--Cceeeeeec
Confidence 222221 12222 234699999987755443 2 4566632 222222121 11 1 267888898
Q ss_pred cC-CEEEEEEecCCeeEEEEEeCC
Q 004766 359 NL-NQMIVSYLSDVKYVLQIRDLK 381 (732)
Q Consensus 359 ~~-~~l~~~~~~~g~~~l~~~d~~ 381 (732)
+. ..|+++.. +.+.||.....
T Consensus 290 pcGsfLLf~~s--gsp~lysl~f~ 311 (445)
T KOG2139|consen 290 PCGSFLLFACS--GSPRLYSLTFD 311 (445)
T ss_pred CCCCEEEEEEc--CCceEEEEeec
Confidence 85 45555554 34677776653
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.036 Score=54.62 Aligned_cols=161 Identities=14% Similarity=0.107 Sum_probs=87.7
Q ss_pred eEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCCCCcEEeeecccceEEEEEecCCeEEEEeCCC
Q 004766 244 YIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKD 323 (732)
Q Consensus 244 ~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~ 323 (732)
-+..++||.|||+|+-.+.++. |.++++.+-... +.+.++.-+.-.......|+||-+.+++...++
T Consensus 88 ~vt~~~FsSdGK~lat~~~Dr~-----Ir~w~~~DF~~~--------eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g 154 (420)
T KOG2096|consen 88 EVTDVAFSSDGKKLATISGDRS-----IRLWDVRDFENK--------EHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRG 154 (420)
T ss_pred ceeeeEEcCCCceeEEEeCCce-----EEEEecchhhhh--------hhhHhhccccCCCceEEEECCCcceEEEEEccC
Confidence 4568999999999988775443 666676653211 122222212111122235889888887766543
Q ss_pred CCCceEEEEeCCC-CC-C-----ceEe-ccCCCCCceeEEEEecCCEEEEEEecCCeeEEEEEeCCCCceeeecccccce
Q 004766 324 APKYKIIRVDLKE-PN-D-----WFEV-IPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGS 395 (732)
Q Consensus 324 ~~~~~l~~~d~~~-~~-~-----~~~l-~~~~~~~~l~~~~~~~~~~l~~~~~~~g~~~l~~~d~~~g~~~~~l~~~~g~ 395 (732)
....+|.++-.+ +. . |-.+ ++......+.++.+.++..++.+...+ ..|.+|++. |+.+..|......
T Consensus 155 -~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~d--t~i~lw~lk-Gq~L~~idtnq~~ 230 (420)
T KOG2096|consen 155 -NKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLD--TKICLWDLK-GQLLQSIDTNQSS 230 (420)
T ss_pred -CEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCC--CcEEEEecC-Cceeeeecccccc
Confidence 233344333221 11 1 1101 111112334556666645566666666 589999998 9887777654333
Q ss_pred eeEeecccCCcEEEEEEecCCCCceEEE
Q 004766 396 VNAISARREDSVVFISFTSFLIPGIVYQ 423 (732)
Q Consensus 396 v~~~~~s~d~~~l~~~~ss~~~p~~~y~ 423 (732)
......||+|.- +..+.|+---.+|.
T Consensus 231 n~~aavSP~GRF--ia~~gFTpDVkVwE 256 (420)
T KOG2096|consen 231 NYDAAVSPDGRF--IAVSGFTPDVKVWE 256 (420)
T ss_pred ccceeeCCCCcE--EEEecCCCCceEEE
Confidence 334567899973 34456654334443
|
|
| >PF06028 DUF915: Alpha/beta hydrolase of unknown function (DUF915); InterPro: IPR010315 This family consists of bacterial proteins of unknown function, which are hydrolase-like | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.015 Score=57.75 Aligned_cols=152 Identities=16% Similarity=0.069 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhC------CCeeeEEEEcCCcccccccccCCCCCccccccC
Q 004766 542 FDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQR------PDLFGCALAHVGVMDMLRYHKFTIGHAWVSDFG 615 (732)
Q Consensus 542 ~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~------p~~f~a~v~~~p~~d~~~~~~~~~~~~~~~~~g 615 (732)
..-+..++.+|.++--+ +++-++||||||+....++..+ |.+=+.+.+..||-....... .....-...-|
T Consensus 86 a~wl~~vl~~L~~~Y~~--~~~N~VGHSmGg~~~~~yl~~~~~~~~~P~l~K~V~Ia~pfng~~~~~~-~~~~~~~~~~g 162 (255)
T PF06028_consen 86 AKWLKKVLKYLKKKYHF--KKFNLVGHSMGGLSWTYYLENYGNDKNLPKLNKLVTIAGPFNGILGMND-DQNQNDLNKNG 162 (255)
T ss_dssp HHHHHHHHHHHHHCC----SEEEEEEETHHHHHHHHHHHHCTTGTTS-EEEEEEEES--TTTTTCCSC--TTTT-CSTT-
T ss_pred HHHHHHHHHHHHHhcCC--CEEeEEEECccHHHHHHHHHHhccCCCCcccceEEEeccccCccccccc-cchhhhhcccC
Confidence 34566788888877333 5999999999999999888864 444555566666655433221 10000012224
Q ss_pred CC-CCHHHHHHHHhc-CcccCCCCCCCCCCCCCCCCCeEEEEeeC------CCCCCCchHHHHHHHHHHHhhcCCCCCCC
Q 004766 616 CS-EEEEEFYWLIKY-SPLHNVRRPWEQNPDKPFQYPSTLLLTAD------HDDRVVPLHSLKLLATMQYVLCTSLENSP 687 (732)
Q Consensus 616 ~p-~~~~~~~~~~~~-sp~~~~~~~~~~~~~~~~~~~p~Li~~g~------~D~~v~~~~~~~~~~~l~~~~~~~~~~~~ 687 (732)
| ...+.++.|.+. . .+.. ....+|-+.|. .|.+||...++.+..-++..
T Consensus 163 -p~~~~~~y~~l~~~~~--~~~p-----------~~i~VLnI~G~~~~g~~sDG~V~~~Ss~sl~~L~~~~--------- 219 (255)
T PF06028_consen 163 -PKSMTPMYQDLLKNRR--KNFP-----------KNIQVLNIYGDLEDGSNSDGIVPNASSLSLRYLLKNR--------- 219 (255)
T ss_dssp -BSS--HHHHHHHHTHG--GGST-----------TT-EEEEEEEESBTTCSBTSSSBHHHHCTHHHHCTTT---------
T ss_pred -CcccCHHHHHHHHHHH--hhCC-----------CCeEEEEEecccCCCCCCCeEEeHHHHHHHHHHhhcc---------
Confidence 4 223445555443 2 2222 24579999998 89999988887776666643
Q ss_pred CCCCEEEEEeCC--CCCCCCCchHHHHHHHHHHHHHHH
Q 004766 688 QTNPIIGRIERK--AGHGVGLPTQKMIDEAADRYGFMA 723 (732)
Q Consensus 688 ~~~~~~~~~~~~--~gH~~~~~~~~~~~~~~~~~~fl~ 723 (732)
.+...-.+++| +.|...... .+....+..||.
T Consensus 220 -~~~Y~e~~v~G~~a~HS~LheN---~~V~~~I~~FLw 253 (255)
T PF06028_consen 220 -AKSYQEKTVTGKDAQHSQLHEN---PQVDKLIIQFLW 253 (255)
T ss_dssp -SSEEEEEEEESGGGSCCGGGCC---HHHHHHHHHHHC
T ss_pred -cCceEEEEEECCCCccccCCCC---HHHHHHHHHHhc
Confidence 44555555554 578654332 244456677763
|
; PDB: 3LP5_A 3FLE_A 3DS8_A. |
| >PF10230 DUF2305: Uncharacterised conserved protein (DUF2305); InterPro: IPR019363 This entry contains proteins that have no known function | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0063 Score=61.54 Aligned_cols=111 Identities=13% Similarity=0.050 Sum_probs=73.5
Q ss_pred ccEEEEEcCCCCccCCCCcChhHHHHHHh---cCcEEEEEcccCCCCCchhHHhcccccCCccHHHHHHHH----HHHHH
Q 004766 481 HPCLLYGYGGFNISVTPSFSVSRTILMRH---LGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISA----SEYLI 553 (732)
Q Consensus 481 ~P~vv~~hG~~~~~~~~~~~~~~~~~l~~---~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~----~~~l~ 553 (732)
.++++++-|-||.. .|-..++..|.+ ..+.|++....|....... .......+..+++|.++- ++.++
T Consensus 2 ~~li~~IPGNPGlv---~fY~~Fl~~L~~~l~~~~~i~~ish~Gh~~~~~~--~~~~~~~~~~sL~~QI~hk~~~i~~~~ 76 (266)
T PF10230_consen 2 RPLIVFIPGNPGLV---EFYEEFLSALYEKLNPQFEILGISHAGHSTSPSN--SKFSPNGRLFSLQDQIEHKIDFIKELI 76 (266)
T ss_pred cEEEEEECCCCChH---HHHHHHHHHHHHhCCCCCeeEEecCCCCcCCccc--ccccCCCCccCHHHHHHHHHHHHHHHh
Confidence 47899999998863 454445444442 4899999999887543332 000123445566666654 33333
Q ss_pred HcCCCCCCcEEEEecChhHHHHHHHHhhCC---CeeeEEEEcCCcc
Q 004766 554 SAGYTQSRKLCIEGGSNGGLLVGACINQRP---DLFGCALAHVGVM 596 (732)
Q Consensus 554 ~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p---~~f~a~v~~~p~~ 596 (732)
....-...++.++|||.|+++++.++.+.+ ..+..++.-.|.+
T Consensus 77 ~~~~~~~~~liLiGHSIGayi~levl~r~~~~~~~V~~~~lLfPTi 122 (266)
T PF10230_consen 77 PQKNKPNVKLILIGHSIGAYIALEVLKRLPDLKFRVKKVILLFPTI 122 (266)
T ss_pred hhhcCCCCcEEEEeCcHHHHHHHHHHHhccccCCceeEEEEeCCcc
Confidence 322114568999999999999999999998 5677777777754
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.044 Score=57.14 Aligned_cols=116 Identities=14% Similarity=0.151 Sum_probs=85.0
Q ss_pred EEEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceec--ccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCC
Q 004766 132 AALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEA--DALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAG 209 (732)
Q Consensus 132 ~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~--~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~ 209 (732)
.++.-+.+||.-+.++-+.+..| .+.+||+.+..+.- .....+.-.+++|||-...|+.+
T Consensus 165 qsvRll~ys~skr~lL~~asd~G----~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vs-------------- 226 (673)
T KOG4378|consen 165 QSVRLLRYSPSKRFLLSIASDKG----AVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVS-------------- 226 (673)
T ss_pred CeEEEeecccccceeeEeeccCC----eEEEEeccCCCcccchhhhccCCcCcceecCCccceEEE--------------
Confidence 45667889999999988875554 78899997765432 11111222689999988777665
Q ss_pred CcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCC
Q 004766 210 TETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSAL 279 (732)
Q Consensus 210 ~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~ 279 (732)
.+...+|+.++.++....+.++|+.|- ..++|+++|.+|+...+ ..+|+.+|+...
T Consensus 227 ----VG~Dkki~~yD~~s~~s~~~l~y~~Pl-----stvaf~~~G~~L~aG~s-----~G~~i~YD~R~~ 282 (673)
T KOG4378|consen 227 ----VGYDKKINIYDIRSQASTDRLTYSHPL-----STVAFSECGTYLCAGNS-----KGELIAYDMRST 282 (673)
T ss_pred ----ecccceEEEeecccccccceeeecCCc-----ceeeecCCceEEEeecC-----CceEEEEecccC
Confidence 356778999999988877888886543 47899999999987654 356999998874
|
|
| >KOG2183 consensus Prolylcarboxypeptidase (angiotensinase C) [Posttranslational modification, protein turnover, chaperones; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0052 Score=62.98 Aligned_cols=93 Identities=25% Similarity=0.272 Sum_probs=67.7
Q ss_pred HHHHHhcCcEEEEEcccCCCC---CchhHHhcccc---cCCccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHH
Q 004766 504 TILMRHLGAVFCIANIRGGGE---YGEEWHKGGAL---AKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGA 577 (732)
Q Consensus 504 ~~~l~~~G~~v~~~~~rG~g~---~g~~~~~~~~~---~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~ 577 (732)
..+..+.+-.++.+..|=-|+ ||.+-+..... ..-+..+.|+...+.+|+..--.....|.++|+|+||+|+++
T Consensus 104 ~D~Ap~~~AllVFaEHRyYGeS~PFG~~s~k~~~hlgyLtseQALADfA~ll~~lK~~~~a~~~pvIafGGSYGGMLaAW 183 (492)
T KOG2183|consen 104 WDLAPELKALLVFAEHRYYGESLPFGSQSYKDARHLGYLTSEQALADFAELLTFLKRDLSAEASPVIAFGGSYGGMLAAW 183 (492)
T ss_pred HhhhHhhCceEEEeehhccccCCCCcchhccChhhhccccHHHHHHHHHHHHHHHhhccccccCcEEEecCchhhHHHHH
Confidence 344556888999999995444 45542222211 223456899999999998875556678999999999999999
Q ss_pred HHhhCCCeeeEEE-EcCCcc
Q 004766 578 CINQRPDLFGCAL-AHVGVM 596 (732)
Q Consensus 578 ~~~~~p~~f~a~v-~~~p~~ 596 (732)
.=..||.+..+++ +.+|++
T Consensus 184 fRlKYPHiv~GAlAaSAPvl 203 (492)
T KOG2183|consen 184 FRLKYPHIVLGALAASAPVL 203 (492)
T ss_pred HHhcChhhhhhhhhccCceE
Confidence 9999999876664 556655
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.13 Score=56.37 Aligned_cols=239 Identities=15% Similarity=0.125 Sum_probs=130.5
Q ss_pred EECCCCcEEEEEEeccCCceEEEEEEECCCCce--ecccccceeeeeE-EEEeCCcEEEEEEecCCCCCCCCCCCCcccC
Q 004766 138 SVSEDAKYLAYALSYSGSDWATIKLMRIEDQIV--EADALSWFKFSSI-AWTHDSKGFFYSRYPAPKEGKDMDAGTETDS 214 (732)
Q Consensus 138 ~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~--~~~~~~~~~~~~~-~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~ 214 (732)
-+-|+-++||.+.+ + ..++++++.|-.. ++-..+- .-++ +|+ +|..|+-.+
T Consensus 331 ~lG~e~~~laVATN---s--~~lr~y~~~~~~c~ii~GH~e~--vlSL~~~~-~g~llat~s------------------ 384 (775)
T KOG0319|consen 331 FLGPEESHLAVATN---S--PELRLYTLPTSYCQIIPGHTEA--VLSLDVWS-SGDLLATGS------------------ 384 (775)
T ss_pred ecCCccceEEEEeC---C--CceEEEecCCCceEEEeCchhh--eeeeeecc-cCcEEEEec------------------
Confidence 37888899998853 2 3678888877552 2222111 2334 466 564444443
Q ss_pred CcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCCCC
Q 004766 215 NLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLP 294 (732)
Q Consensus 215 ~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~ 294 (732)
....+.+|++..+...-.++-....+..-+..++.+.-|...+.+.+... .-++|-++-+. ++. .
T Consensus 385 -KD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~--tlK~W~l~~s~-~~~-----------~ 449 (775)
T KOG0319|consen 385 -KDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDC--TLKLWDLPKSK-ETA-----------F 449 (775)
T ss_pred -CCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCc--eEEEecCCCcc-ccc-----------c
Confidence 33356666664443332233222222333446677777777766665443 44555444311 111 0
Q ss_pred cEEee-----ecccceE--EEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecCCEEEEEE
Q 004766 295 FVKLI-----DGFDAQY--EVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSY 367 (732)
Q Consensus 295 ~~~l~-----~~~~~~~--~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~~l~~~~ 367 (732)
...++ .-.+.++ ..++|+. .|+.....+ ...+|+.++ ...-.-+|-.|. .-+-.+.+++.++++.+.
T Consensus 450 ~~~~~~~~t~~aHdKdIN~Vaia~nd-kLiAT~SqD-ktaKiW~le--~~~l~~vLsGH~--RGvw~V~Fs~~dq~laT~ 523 (775)
T KOG0319|consen 450 PIVLTCRYTERAHDKDINCVAIAPND-KLIATGSQD-KTAKIWDLE--QLRLLGVLSGHT--RGVWCVSFSKNDQLLATC 523 (775)
T ss_pred cceehhhHHHHhhcccccceEecCCC-ceEEecccc-cceeeeccc--CceEEEEeeCCc--cceEEEEeccccceeEec
Confidence 11111 0112222 2467754 444333333 245676665 333234455554 557788888878899888
Q ss_pred ecCCeeEEEEEeCCCCceeeecccccceeeEeecccCCcEEEEEEecCCCCceEEEEECCCC
Q 004766 368 LSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTE 429 (732)
Q Consensus 368 ~~~g~~~l~~~d~~~g~~~~~l~~~~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~ 429 (732)
+.| ..|.+|.+++...++++..+...|-..++-.++..+. +..+ -+.+-.++..++
T Consensus 524 SgD--~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qli-S~~a---dGliKlWnikt~ 579 (775)
T KOG0319|consen 524 SGD--KTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLI-SAGA---DGLIKLWNIKTN 579 (775)
T ss_pred cCC--ceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEE-eccC---CCcEEEEeccch
Confidence 877 5788888888888788876666665566655666543 3322 345566666555
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.16 Score=54.98 Aligned_cols=282 Identities=13% Similarity=0.110 Sum_probs=141.0
Q ss_pred eEEECCCCcEEEEEEeccCCceEEEEEEECCCCcee---c--cccc--ceeeeeEEEEeCCcEEEEEEecCCCCCCCCCC
Q 004766 136 KVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVE---A--DALS--WFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDA 208 (732)
Q Consensus 136 ~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~---~--~~~~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~ 208 (732)
..+.++.+.+.+|+ +|.+ ..|++|++..-.-. + ..++ ......++-.-+|+.|+-++.+
T Consensus 29 ~Lq~da~~~ryLfT---gGRD-g~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsD---------- 94 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFT---GGRD-GIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSD---------- 94 (735)
T ss_pred hccccCCCCceEEe---cCCC-ceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCC----------
Confidence 44566666665565 3443 68999987532211 1 1111 0001334444457777666533
Q ss_pred CCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccc
Q 004766 209 GTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKK 288 (732)
Q Consensus 209 ~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~ 288 (732)
..|.+|+...+..- +.-....+..|+-.++.-.....++.+. +- ..+|+++|+.+++..+. .
T Consensus 95 ---------tTVK~W~~~~~~~~--c~stir~H~DYVkcla~~ak~~~lvaSg--GL--D~~IflWDin~~~~~l~---~ 156 (735)
T KOG0308|consen 95 ---------TTVKVWNAHKDNTF--CMSTIRTHKDYVKCLAYIAKNNELVASG--GL--DRKIFLWDINTGTATLV---A 156 (735)
T ss_pred ---------ceEEEeecccCcch--hHhhhhcccchheeeeecccCceeEEec--CC--CccEEEEEccCcchhhh---h
Confidence 35777776544311 1111122334554455522233333222 22 45699999987642110 0
Q ss_pred cCCCCCcEEeeecccceEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecCCEEEEEEe
Q 004766 289 RDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYL 368 (732)
Q Consensus 289 ~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~~l~~~~~ 368 (732)
.....+...+..+.......+.-+..-..|++. +....|..+|..+.+....|..|. ..+..+.+.+|+.-+++..
T Consensus 157 s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsG--gtek~lr~wDprt~~kimkLrGHT--dNVr~ll~~dDGt~~ls~s 232 (735)
T KOG0308|consen 157 SFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSG--GTEKDLRLWDPRTCKKIMKLRGHT--DNVRVLLVNDDGTRLLSAS 232 (735)
T ss_pred hccccccccCCCCCccceeeeecCCcceEEEec--CcccceEEeccccccceeeeeccc--cceEEEEEcCCCCeEeecC
Confidence 000111112221211122222222222233332 334568888988877667777776 5677788887777777877
Q ss_pred cCCeeEEEEEeCCCCceeeecccccceeeEeecccCCcEEEEEEecCCCCceEEEEECCCCCCceEEEEeecCCCCCCCC
Q 004766 369 SDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTETPEMKIFRETIIPGFDRSE 448 (732)
Q Consensus 369 ~~g~~~l~~~d~~~g~~~~~l~~~~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~~~~~~~l~~~~~~~~~~~~ 448 (732)
.|| .|.+||+.-.+.+..+..+...|..+..+++-..+|.. ..-.-+|+-|+.+.. ..+++..+.-|-.. -.
T Consensus 233 SDg--tIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG----~rd~~i~~Tdl~n~~-~~tlick~daPv~~-l~ 304 (735)
T KOG0308|consen 233 SDG--TIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSG----GRDGNIYRTDLRNPA-KSTLICKEDAPVLK-LH 304 (735)
T ss_pred CCc--eEEeeeccccceeeeEEeccCceEEEeeCCCcceEEec----CCCCcEEecccCCch-hheEeecCCCchhh-hh
Confidence 774 78999994222333444454446566666665555422 234568888888742 35555554433111 01
Q ss_pred c--eEEEEEEEccCC
Q 004766 449 F--HVHQVFVPSKDG 461 (732)
Q Consensus 449 ~--~~~~~~~~s~dG 461 (732)
+ ..+.+|+.+.|+
T Consensus 305 ~~~~~~~~WvtTtds 319 (735)
T KOG0308|consen 305 LHEHDNSVWVTTTDS 319 (735)
T ss_pred hccccCCceeeeccc
Confidence 1 124457777776
|
|
| >PTZ00472 serine carboxypeptidase (CBP1); Provisional | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.0098 Score=65.10 Aligned_cols=131 Identities=15% Similarity=0.096 Sum_probs=79.1
Q ss_pred eeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcC----------------hhHHHHHHhcCcEEEEEcc-cCCCCC
Q 004766 463 TKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFS----------------VSRTILMRHLGAVFCIANI-RGGGEY 525 (732)
Q Consensus 463 ~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~----------------~~~~~~l~~~G~~v~~~~~-rG~g~~ 525 (732)
..+..|++..+.. ....|+||+++||||.+....+. ..-..|.. . ..++.+|. +|.| +
T Consensus 61 ~~lFyw~~~s~~~--~~~~Pl~lwlnGGPG~ss~~G~f~E~GP~~i~~~~~~~~~n~~sW~~-~-~~~l~iDqP~G~G-~ 135 (462)
T PTZ00472 61 KHYFYWAFGPRNG--NPEAPVLLWMTGGPGCSSMFALLAENGPCLMNETTGDIYNNTYSWNN-E-AYVIYVDQPAGVG-F 135 (462)
T ss_pred ceEEEEEEEcCCC--CCCCCEEEEECCCCcHHHHHhhhccCCCeEEeCCCCceeECCccccc-c-cCeEEEeCCCCcC-c
Confidence 6788888876542 45789999999999986433110 01113333 3 45556665 5654 3
Q ss_pred chhHHhcccccCCccHHHHHHHHHHHHHHc-CCCCCCcEEEEecChhHHHHHHHHhh----C------CCeeeEEEEcCC
Q 004766 526 GEEWHKGGALAKKQNCFDDFISASEYLISA-GYTQSRKLCIEGGSNGGLLVGACINQ----R------PDLFGCALAHVG 594 (732)
Q Consensus 526 g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~-~~~d~~~i~i~G~S~GG~l~~~~~~~----~------p~~f~a~v~~~p 594 (732)
+..-. ...........+|+..+++.+.++ ......++.|.|+||||..+..++.+ . .=-+++++++.|
T Consensus 136 S~~~~-~~~~~~~~~~a~d~~~~l~~f~~~~p~~~~~~~~i~GeSygG~y~p~~a~~i~~~n~~~~~~~inLkGi~IGNg 214 (462)
T PTZ00472 136 SYADK-ADYDHNESEVSEDMYNFLQAFFGSHEDLRANDLFVVGESYGGHYAPATAYRINMGNKKGDGLYINLAGLAVGNG 214 (462)
T ss_pred ccCCC-CCCCCChHHHHHHHHHHHHHHHHhCccccCCCEEEEeecchhhhHHHHHHHHHhhccccCCceeeeEEEEEecc
Confidence 32100 001111233567777777755543 33345789999999999988766653 1 114789999999
Q ss_pred ccccc
Q 004766 595 VMDML 599 (732)
Q Consensus 595 ~~d~~ 599 (732)
++|..
T Consensus 215 ~~dp~ 219 (462)
T PTZ00472 215 LTDPY 219 (462)
T ss_pred ccChh
Confidence 88764
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.053 Score=54.65 Aligned_cols=117 Identities=16% Similarity=0.094 Sum_probs=74.8
Q ss_pred EEEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecc-cccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCC
Q 004766 132 AALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEAD-ALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGT 210 (732)
Q Consensus 132 ~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~-~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~ 210 (732)
..+..+++++.+.+|||=.+.. ..+|+|+|+.+-+.... ..+......++|++||..|+-.+.
T Consensus 130 ~gl~AlS~n~~n~ylAyp~s~t---~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASe------------- 193 (391)
T KOG2110|consen 130 KGLCALSPNNANCYLAYPGSTT---SGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASE------------- 193 (391)
T ss_pred cceEeeccCCCCceEEecCCCC---CceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEecc-------------
Confidence 3456777888888999986654 35899999887654321 112223478999999999887653
Q ss_pred cccCCcccEEEEEECCCCCCCCeEEEecCC--CCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCC
Q 004766 211 ETDSNLYHEFYYHFLGTKQSEDILCWKDPE--HPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSA 278 (732)
Q Consensus 211 ~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~--~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~ 278 (732)
.+.-|+++.+.+++ .+++... .+..+++++||||+++|..+++..+ |++..++.
T Consensus 194 -----KGTVIRVf~v~~G~----kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeT-----VHiFKL~~ 249 (391)
T KOG2110|consen 194 -----KGTVIRVFSVPEGQ----KLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTET-----VHIFKLEK 249 (391)
T ss_pred -----CceEEEEEEcCCcc----EeeeeeCCceeeEEEEEEECCCCCeEEEecCCCe-----EEEEEecc
Confidence 33345566654432 3443322 2334679999999999987765332 55555544
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.08 Score=53.50 Aligned_cols=157 Identities=12% Similarity=0.016 Sum_probs=89.8
Q ss_pred eEEECC--CCcEEEEEEeccCCceEEEEEEECCCCcee----cccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCC
Q 004766 136 KVSVSE--DAKYLAYALSYSGSDWATIKLMRIEDQIVE----ADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAG 209 (732)
Q Consensus 136 ~~~~SP--DG~~la~~~~~~G~e~~~i~v~dl~~g~~~----~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~ 209 (732)
++.||| .|+.+ .|+-...|++|...+|.-. +.+.....+-.+.|||..+.++++..
T Consensus 216 ~LdWSp~~~g~Ll------sGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS------------ 277 (440)
T KOG0302|consen 216 GLDWSPIKTGRLL------SGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCS------------ 277 (440)
T ss_pred eeecccccccccc------cCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeee------------
Confidence 678999 34322 4555678999998888732 22222223467999999999988753
Q ss_pred CcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCccccccc
Q 004766 210 TETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKR 289 (732)
Q Consensus 210 ~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~ 289 (732)
-...|..|++..++....+.... +..-+.-++|+.+-..|+.... ...+-++|+..-.
T Consensus 278 ------~DgsIrIWDiRs~~~~~~~~~kA--h~sDVNVISWnr~~~lLasG~D-----dGt~~iwDLR~~~--------- 335 (440)
T KOG0302|consen 278 ------CDGSIRIWDIRSGPKKAAVSTKA--HNSDVNVISWNRREPLLASGGD-----DGTLSIWDLRQFK--------- 335 (440)
T ss_pred ------cCceEEEEEecCCCccceeEeec--cCCceeeEEccCCcceeeecCC-----CceEEEEEhhhcc---------
Confidence 22357788887765443333322 2223345788777664443322 2346777877632
Q ss_pred CCCCCcEEeeecccceEE-EEEecCCeEEEEeCCCCCCceEEEEeCCC
Q 004766 290 DGLLPFVKLIDGFDAQYE-VIANDDTVFTFLTNKDAPKYKIIRVDLKE 336 (732)
Q Consensus 290 ~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~ 336 (732)
...|+..........+. -|+|.....+..+.. ..+|..+|++-
T Consensus 336 -~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~---D~QitiWDlsv 379 (440)
T KOG0302|consen 336 -SGQPVATFKYHKAPITSIEWHPHEDSVIAASGE---DNQITIWDLSV 379 (440)
T ss_pred -CCCcceeEEeccCCeeEEEeccccCceEEeccC---CCcEEEEEeec
Confidence 12333333333333333 388866665555443 34688888754
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.1 Score=52.65 Aligned_cols=147 Identities=10% Similarity=0.135 Sum_probs=91.4
Q ss_pred CCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCCCCcEEeee--cccceEEEEEecCC--eEEEEeCCCCCCce
Q 004766 253 DGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLID--GFDAQYEVIANDDT--VFTFLTNKDAPKYK 328 (732)
Q Consensus 253 Dg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~s~dg~--~l~~~s~~~~~~~~ 328 (732)
+.++|++... ..||++|+.+-. .+..+.. ........+|++.. ++++=. ....+.
T Consensus 96 Nr~RLvV~Le------e~IyIydI~~Mk-------------lLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~--s~t~Gd 154 (391)
T KOG2110|consen 96 NRKRLVVCLE------ESIYIYDIKDMK-------------LLHTIETTPPNPKGLCALSPNNANCYLAYPG--STTSGD 154 (391)
T ss_pred ccceEEEEEc------ccEEEEecccce-------------eehhhhccCCCccceEeeccCCCCceEEecC--CCCCce
Confidence 5566666552 349999987621 0111111 11122345666544 555433 334678
Q ss_pred EEEEeCCCCCCceEeccCCCCCceeEEEEecCCEEEEEEecCCeeEEEEEeCCCCceeeecccc--cceeeEeecccCCc
Q 004766 329 IIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIE--IGSVNAISARREDS 406 (732)
Q Consensus 329 l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~~l~~~~~~~g~~~l~~~d~~~g~~~~~l~~~--~g~v~~~~~s~d~~ 406 (732)
|+++|+.+-.....+-.|. ..+..+.++.++.++++.++.| .-|+++...+|+.+.++-.. ...+.++++++|+.
T Consensus 155 V~l~d~~nl~~v~~I~aH~--~~lAalafs~~G~llATASeKG-TVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~ 231 (391)
T KOG2110|consen 155 VVLFDTINLQPVNTINAHK--GPLAALAFSPDGTLLATASEKG-TVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQ 231 (391)
T ss_pred EEEEEcccceeeeEEEecC--CceeEEEECCCCCEEEEeccCc-eEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCC
Confidence 9999987765334444454 6788899988888999998887 57889998888876666543 34567888999988
Q ss_pred EEEEEEecCCCCceEEEEE
Q 004766 407 VVFISFTSFLIPGIVYQCN 425 (732)
Q Consensus 407 ~l~~~~ss~~~p~~~y~~d 425 (732)
.| ..+|-+.--.++.++
T Consensus 232 ~L--~~sS~TeTVHiFKL~ 248 (391)
T KOG2110|consen 232 FL--AASSNTETVHIFKLE 248 (391)
T ss_pred eE--EEecCCCeEEEEEec
Confidence 44 444545444555554
|
|
| >PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.0035 Score=42.33 Aligned_cols=29 Identities=17% Similarity=0.100 Sum_probs=21.1
Q ss_pred EEeEEECCCCcEEEEEEeccCCceEEEEE
Q 004766 134 LIKVSVSEDAKYLAYALSYSGSDWATIKL 162 (732)
Q Consensus 134 ~~~~~~SPDG~~la~~~~~~G~e~~~i~v 162 (732)
...+.|||||++|+|++...+....+||+
T Consensus 11 ~~~p~~SpDGk~i~f~s~~~~~g~~diy~ 39 (39)
T PF07676_consen 11 DGSPAWSPDGKYIYFTSNRNDRGSFDIYV 39 (39)
T ss_dssp EEEEEE-TTSSEEEEEEECT--SSEEEEE
T ss_pred ccCEEEecCCCEEEEEecCCCCCCcCEEC
Confidence 35899999999999999988222367775
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A .... |
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.079 Score=54.08 Aligned_cols=114 Identities=15% Similarity=0.114 Sum_probs=66.3
Q ss_pred EEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecccccce-eeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcc
Q 004766 134 LIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWF-KFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTET 212 (732)
Q Consensus 134 ~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~~~~-~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~ 212 (732)
+....||||+..+.+.+ + ...+++||+..|..+....+.. -..+++|.|-++.|+-.+.+..... +
T Consensus 126 iydL~Ws~d~~~l~s~s---~--dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~--~------ 192 (434)
T KOG1009|consen 126 IYDLAWSPDSNFLVSGS---V--DNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEG--F------ 192 (434)
T ss_pred hhhhhccCCCceeeeee---c--cceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccce--e------
Confidence 45688999999988764 2 2578999999998665332222 2378999999998887665441100 0
Q ss_pred cCCcccEEEEEE-----CCCC---CCCCeEEEecCCCCeeEEEeEEecCCcEEEEE
Q 004766 213 DSNLYHEFYYHF-----LGTK---QSEDILCWKDPEHPKYIFSGHVTEDGQYLVMC 260 (732)
Q Consensus 213 ~~~~~~~v~~~~-----lgt~---~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~ 260 (732)
.......++++. .+.. ...-.-+|....-..|+..++|||||..++.-
T Consensus 193 ~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtP 248 (434)
T KOG1009|consen 193 SAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTP 248 (434)
T ss_pred eeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcc
Confidence 001111222222 1111 11112244433334566788999999998764
|
|
| >KOG4389 consensus Acetylcholinesterase/Butyrylcholinesterase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.0026 Score=66.43 Aligned_cols=112 Identities=21% Similarity=0.209 Sum_probs=74.7
Q ss_pred EEEEEcCCC---CccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCccHHHHHHHHHHHHHHc---C
Q 004766 483 CLLYGYGGF---NISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISA---G 556 (732)
Q Consensus 483 ~vv~~hG~~---~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~---~ 556 (732)
++|++|||. |++...-|+..+ +.+....+|+.+|||-|. ||--+.-......+--.+-|..-|+.|+.++ -
T Consensus 137 VlVWiyGGGF~sGt~SLdvYdGk~--la~~envIvVs~NYRvG~-FGFL~l~~~~eaPGNmGl~DQqLAl~WV~~Ni~aF 213 (601)
T KOG4389|consen 137 VLVWIYGGGFYSGTPSLDVYDGKF--LAAVENVIVVSMNYRVGA-FGFLYLPGHPEAPGNMGLLDQQLALQWVQENIAAF 213 (601)
T ss_pred EEEEEEcCccccCCcceeeeccce--eeeeccEEEEEeeeeecc-ceEEecCCCCCCCCccchHHHHHHHHHHHHhHHHh
Confidence 999999983 333334455543 234357899999999642 3332221111122223478999999999887 2
Q ss_pred CCCCCcEEEEecChhHHHHHHHHhhCCC---eeeEEEEcCCcccc
Q 004766 557 YTQSRKLCIEGGSNGGLLVGACINQRPD---LFGCALAHVGVMDM 598 (732)
Q Consensus 557 ~~d~~~i~i~G~S~GG~l~~~~~~~~p~---~f~a~v~~~p~~d~ 598 (732)
--||+||.++|.|+|..-+.+-+.- |. +|+-+|+++|-++-
T Consensus 214 GGnp~~vTLFGESAGaASv~aHLls-P~S~glF~raIlQSGS~~~ 257 (601)
T KOG4389|consen 214 GGNPSRVTLFGESAGAASVVAHLLS-PGSRGLFHRAILQSGSLNN 257 (601)
T ss_pred CCCcceEEEeccccchhhhhheecC-CCchhhHHHHHhhcCCCCC
Confidence 3589999999999998866655443 43 79999999986653
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.24 Score=49.14 Aligned_cols=201 Identities=13% Similarity=0.120 Sum_probs=97.3
Q ss_pred eeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEE
Q 004766 180 FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVM 259 (732)
Q Consensus 180 ~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~ 259 (732)
.++++|.||+++|+.+.+ .+..|+..++.+.. -...-+.+ ..-..++++.-+|++++
T Consensus 24 ~SGLTy~pd~~tLfaV~d------------------~~~~i~els~~G~v-lr~i~l~g---~~D~EgI~y~g~~~~vl- 80 (248)
T PF06977_consen 24 LSGLTYNPDTGTLFAVQD------------------EPGEIYELSLDGKV-LRRIPLDG---FGDYEGITYLGNGRYVL- 80 (248)
T ss_dssp EEEEEEETTTTEEEEEET------------------TTTEEEEEETT--E-EEEEE-SS----SSEEEEEE-STTEEEE-
T ss_pred ccccEEcCCCCeEEEEEC------------------CCCEEEEEcCCCCE-EEEEeCCC---CCCceeEEEECCCEEEE-
Confidence 499999999999888853 33467777764221 11111211 11234778887887654
Q ss_pred EEecCCcceEEEEEEeCCCCCCCcccccccCCCCCcEEeeecc----cc--eEEEEEecCCeEEEEeCCCCCCceEEEEe
Q 004766 260 CIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGF----DA--QYEVIANDDTVFTFLTNKDAPKYKIIRVD 333 (732)
Q Consensus 260 ~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~--~~~~~s~dg~~l~~~s~~~~~~~~l~~~d 333 (732)
... . ...++++++......+. ....+.+.-+. .. +-.+|.+.+++|++...+ .+ ..|+.++
T Consensus 81 ~~E-r---~~~L~~~~~~~~~~~~~-------~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~-~P-~~l~~~~ 147 (248)
T PF06977_consen 81 SEE-R---DQRLYIFTIDDDTTSLD-------RADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKER-KP-KRLYEVN 147 (248)
T ss_dssp EET-T---TTEEEEEEE----TT---------EEEEEEEE---S---SS--EEEEEETTTTEEEEEEES-SS-EEEEEEE
T ss_pred EEc-C---CCcEEEEEEeccccccc-------hhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCC-CC-hhhEEEc
Confidence 322 2 24577776633111000 00011121111 11 223588888999987554 33 4688887
Q ss_pred C--CCCC-CceEec--c--CCCCCceeEEEEecC-CEEEEEEecCCeeEEEEEeCCCCceeeeccccc---------cee
Q 004766 334 L--KEPN-DWFEVI--P--EAERDVLESATAVNL-NQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEI---------GSV 396 (732)
Q Consensus 334 ~--~~~~-~~~~l~--~--~~~~~~l~~~~~~~~-~~l~~~~~~~g~~~l~~~d~~~g~~~~~l~~~~---------g~v 396 (732)
. .... ...... . ...-..++++.+.+. +++++.+.+. ..|..+|.+ |+.+..+.+.. -..
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es--~~l~~~d~~-G~~~~~~~L~~g~~gl~~~~~Qp 224 (248)
T PF06977_consen 148 GFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDES--RLLLELDRQ-GRVVSSLSLDRGFHGLSKDIPQP 224 (248)
T ss_dssp STT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTT--TEEEEE-TT---EEEEEE-STTGGG-SS---SE
T ss_pred cccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCC--CeEEEECCC-CCEEEEEEeCCcccCcccccCCc
Confidence 6 2211 001110 0 011134677777763 6888887665 578888865 87655555432 134
Q ss_pred eEeecccCCcEEEEEEecCCCCceEEEE
Q 004766 397 NAISARREDSVVFISFTSFLIPGIVYQC 424 (732)
Q Consensus 397 ~~~~~s~d~~~l~~~~ss~~~p~~~y~~ 424 (732)
.+++++++|+ ||++. .|...|++
T Consensus 225 EGIa~d~~G~-LYIvs----EpNlfy~f 247 (248)
T PF06977_consen 225 EGIAFDPDGN-LYIVS----EPNLFYRF 247 (248)
T ss_dssp EEEEE-TT---EEEEE----TTTEEEEE
T ss_pred cEEEECCCCC-EEEEc----CCceEEEe
Confidence 5678888874 55542 37777765
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PF07819 PGAP1: PGAP1-like protein; InterPro: IPR012908 The sequences found in this family are similar to PGAP1 (Q765A7 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.014 Score=57.26 Aligned_cols=103 Identities=16% Similarity=0.156 Sum_probs=54.2
Q ss_pred ccEEEEEcCCCCccCCC-CcChhHH-H-HH--HhcCcEEEEEcccCCCCCchhHHhcccccCCccHHHHHHHHHHHHHHc
Q 004766 481 HPCLLYGYGGFNISVTP-SFSVSRT-I-LM--RHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISA 555 (732)
Q Consensus 481 ~P~vv~~hG~~~~~~~~-~~~~~~~-~-~l--~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~ 555 (732)
...|||+||..|+.... .+..... . +. ....+.++..|+..-.. .++.. .. ....+-+..+++++.+.
T Consensus 4 g~pVlFIhG~~Gs~~q~rsl~~~~~~~~~~~~~~~~~d~ft~df~~~~s---~~~g~--~l--~~q~~~~~~~i~~i~~~ 76 (225)
T PF07819_consen 4 GIPVLFIHGNAGSYKQVRSLASELQRKALLNDNSSHFDFFTVDFNEELS---AFHGR--TL--QRQAEFLAEAIKYILEL 76 (225)
T ss_pred CCEEEEECcCCCCHhHHHHHHHHHhhhhhhccCccceeEEEeccCcccc---ccccc--cH--HHHHHHHHHHHHHHHHh
Confidence 35789999976652211 1111110 0 00 11257788888764211 11100 00 01123344555655443
Q ss_pred ---CCCCCCcEEEEecChhHHHHHHHHhhCC---CeeeEEE
Q 004766 556 ---GYTQSRKLCIEGGSNGGLLVGACINQRP---DLFGCAL 590 (732)
Q Consensus 556 ---~~~d~~~i~i~G~S~GG~l~~~~~~~~p---~~f~a~v 590 (732)
....+++|.++||||||+++-.++...+ +..+.+|
T Consensus 77 ~~~~~~~~~~vilVgHSmGGlvar~~l~~~~~~~~~v~~ii 117 (225)
T PF07819_consen 77 YKSNRPPPRSVILVGHSMGGLVARSALSLPNYDPDSVKTII 117 (225)
T ss_pred hhhccCCCCceEEEEEchhhHHHHHHHhccccccccEEEEE
Confidence 2457899999999999998887776533 2455554
|
This is an endoplasmic reticulum membrane protein with a catalytic serine-containing motif that is conserved in a number of lipases. PGAP1 functions as a GPI inositol-deacylase; this deacylation is important for the efficient transport of GPI-anchored proteins from the endoplasmic reticulum to the Golgi body [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006505 GPI anchor metabolic process, 0006886 intracellular protein transport, 0031227 intrinsic to endoplasmic reticulum membrane |
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.21 Score=52.22 Aligned_cols=117 Identities=12% Similarity=-0.032 Sum_probs=77.5
Q ss_pred CEEEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceeccccccee-eeeEEEEeCCcEEEEEEecCCCCCCCCCCC
Q 004766 131 TAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWFK-FSSIAWTHDSKGFFYSRYPAPKEGKDMDAG 209 (732)
Q Consensus 131 ~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~~~~~-~~~~~WspDg~~l~y~~~~~~~~~~~~~~~ 209 (732)
...+....|+|+++.++.+. ++...+.+||+.++....+..+..+ ....+|+|-...++++
T Consensus 110 ~apv~~~~f~~~d~t~l~s~----sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvt-------------- 171 (487)
T KOG0310|consen 110 QAPVHVTKFSPQDNTMLVSG----SDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVT-------------- 171 (487)
T ss_pred cCceeEEEecccCCeEEEec----CCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEe--------------
Confidence 34567788999998877653 4446889999999885322222222 3678999988888887
Q ss_pred CcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCC
Q 004766 210 TETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSAL 279 (732)
Q Consensus 210 ~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~ 279 (732)
.++...|.+|+.-+... .+.+... ..-+.++.+-|.|..|+..+ .+.+-+||+.+|
T Consensus 172 ----GsYDg~vrl~DtR~~~~---~v~elnh-g~pVe~vl~lpsgs~iasAg------Gn~vkVWDl~~G 227 (487)
T KOG0310|consen 172 ----GSYDGKVRLWDTRSLTS---RVVELNH-GCPVESVLALPSGSLIASAG------GNSVKVWDLTTG 227 (487)
T ss_pred ----cCCCceEEEEEeccCCc---eeEEecC-CCceeeEEEcCCCCEEEEcC------CCeEEEEEecCC
Confidence 35677899999866432 2333221 22345677788988886543 255788898864
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.16 Score=50.49 Aligned_cols=111 Identities=10% Similarity=0.055 Sum_probs=63.9
Q ss_pred EEEecCCeEEEEeCCCCCCceEEEEeCCCCC----CceEeccCC--CCCceeEEEEecC-CEEEEEEecCCeeEEEEEeC
Q 004766 308 VIANDDTVFTFLTNKDAPKYKIIRVDLKEPN----DWFEVIPEA--ERDVLESATAVNL-NQMIVSYLSDVKYVLQIRDL 380 (732)
Q Consensus 308 ~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~----~~~~l~~~~--~~~~l~~~~~~~~-~~l~~~~~~~g~~~l~~~d~ 380 (732)
.|+|||..|+. +-+..|-.+|+..+. ...++.... ....+..+++++- ...+....-...--||.+
T Consensus 165 ~Fs~DGeqlfa-----GykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~-- 237 (406)
T KOG2919|consen 165 QFSPDGEQLFA-----GYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYND-- 237 (406)
T ss_pred EecCCCCeEee-----cccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEec--
Confidence 49999999884 234457777774432 122222211 1234566677663 334443333322344444
Q ss_pred CCCceeeecccccceeeEeecccCCcEEEEEEecCCCCceEEEEECCC
Q 004766 381 KNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKT 428 (732)
Q Consensus 381 ~~g~~~~~l~~~~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~ 428 (732)
+.+..+..+-...|.|..+.+-+||+.++ +....-..|..+|+..
T Consensus 238 ~~~~pl~llggh~gGvThL~~~edGn~lf---sGaRk~dkIl~WDiR~ 282 (406)
T KOG2919|consen 238 DGRRPLQLLGGHGGGVTHLQWCEDGNKLF---SGARKDDKILCWDIRY 282 (406)
T ss_pred CCCCceeeecccCCCeeeEEeccCcCeec---ccccCCCeEEEEeehh
Confidence 33455444444477888899999999764 4566677888888753
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.18 Score=51.74 Aligned_cols=62 Identities=11% Similarity=0.048 Sum_probs=35.7
Q ss_pred EEEeEEECCCCcEEEEEEec------c-CCceEEEEEEECCCCceecccccceeeeeEEEEeCCcEEEEE
Q 004766 133 ALIKVSVSEDAKYLAYALSY------S-GSDWATIKLMRIEDQIVEADALSWFKFSSIAWTHDSKGFFYS 195 (732)
Q Consensus 133 ~~~~~~~SPDG~~la~~~~~------~-G~e~~~i~v~dl~~g~~~~~~~~~~~~~~~~WspDg~~l~y~ 195 (732)
......+.|||+.. |.... . ..+...||.+|..++........-....+++|||||+.+|++
T Consensus 112 r~ND~~v~pdG~~w-fgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~a 180 (307)
T COG3386 112 RPNDGVVDPDGRIW-FGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVA 180 (307)
T ss_pred CCCceeEcCCCCEE-EeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEE
Confidence 34577889999743 33322 1 122346777776444322111101123789999999988887
|
|
| >PLN02733 phosphatidylcholine-sterol O-acyltransferase | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.0042 Score=66.94 Aligned_cols=86 Identities=21% Similarity=0.274 Sum_probs=57.4
Q ss_pred CcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHH
Q 004766 498 SFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGA 577 (732)
Q Consensus 498 ~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~ 577 (732)
.|... ...|.+.||.+ ..|++| +|.+|.... .....++++.+.++.+.+.. ...++.|+||||||+++..
T Consensus 109 ~~~~l-i~~L~~~GY~~-~~dL~g---~gYDwR~~~---~~~~~~~~Lk~lIe~~~~~~--g~~kV~LVGHSMGGlva~~ 178 (440)
T PLN02733 109 YFHDM-IEQLIKWGYKE-GKTLFG---FGYDFRQSN---RLPETMDGLKKKLETVYKAS--GGKKVNIISHSMGGLLVKC 178 (440)
T ss_pred HHHHH-HHHHHHcCCcc-CCCccc---CCCCccccc---cHHHHHHHHHHHHHHHHHHc--CCCCEEEEEECHhHHHHHH
Confidence 44443 45566699877 678888 445565431 11234677777777766542 2368999999999999999
Q ss_pred HHhhCCCee----eEEEEcC
Q 004766 578 CINQRPDLF----GCALAHV 593 (732)
Q Consensus 578 ~~~~~p~~f----~a~v~~~ 593 (732)
++.++|+.+ +..|+.+
T Consensus 179 fl~~~p~~~~k~I~~~I~la 198 (440)
T PLN02733 179 FMSLHSDVFEKYVNSWIAIA 198 (440)
T ss_pred HHHHCCHhHHhHhccEEEEC
Confidence 998888753 4445443
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.07 Score=54.22 Aligned_cols=161 Identities=10% Similarity=0.015 Sum_probs=90.6
Q ss_pred CEEEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCcee-cccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCC
Q 004766 131 TAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVE-ADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAG 209 (732)
Q Consensus 131 ~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~-~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~ 209 (732)
...++-+.|.|--.-++++. |.+ ++|.+||+.||+.+ ... ...-..+..|+-||..|+-++.+.
T Consensus 131 ~rrVg~V~wHPtA~NVLlsa---g~D-n~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDK---------- 195 (472)
T KOG0303|consen 131 QRRVGLVQWHPTAPNVLLSA---GSD-NTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDK---------- 195 (472)
T ss_pred ceeEEEEeecccchhhHhhc---cCC-ceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccc----------
Confidence 45678888999877666653 333 68999999999944 222 222358899999999888776443
Q ss_pred CcccCCcccEEEEEECCCCCCCCeEEEecCCCCe-eEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccc
Q 004766 210 TETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPK-YIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKK 288 (732)
Q Consensus 210 ~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~-~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~ 288 (732)
+|..++..++. +|.+...+.+ -...+-|-.+|+ |+-+.-... ....+-++|.....
T Consensus 196 ---------kvRv~dpr~~~----~v~e~~~heG~k~~Raifl~~g~-i~tTGfsr~-seRq~aLwdp~nl~-------- 252 (472)
T KOG0303|consen 196 ---------KVRVIDPRRGT----VVSEGVAHEGAKPARAIFLASGK-IFTTGFSRM-SERQIALWDPNNLE-------- 252 (472)
T ss_pred ---------eeEEEcCCCCc----EeeecccccCCCcceeEEeccCc-eeeeccccc-cccceeccCccccc--------
Confidence 57777765542 3443322111 112455667888 433332222 13456666655421
Q ss_pred cCCCCCcEEeeecccceEEEEEecCCeEEEEeCCCCCCceEEEE
Q 004766 289 RDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRV 332 (732)
Q Consensus 289 ~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~ 332 (732)
++.....|-.....-.+++.+|.+.+| +..++..+.+-|.+
T Consensus 253 --eP~~~~elDtSnGvl~PFyD~dt~ivY-l~GKGD~~IRYyEi 293 (472)
T KOG0303|consen 253 --EPIALQELDTSNGVLLPFYDPDTSIVY-LCGKGDSSIRYFEI 293 (472)
T ss_pred --CcceeEEeccCCceEEeeecCCCCEEE-EEecCCcceEEEEe
Confidence 122233443333334456777666555 44444334444444
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.12 Score=56.08 Aligned_cols=98 Identities=16% Similarity=0.146 Sum_probs=62.0
Q ss_pred EEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecccc-cceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCc
Q 004766 133 ALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADAL-SWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTE 211 (732)
Q Consensus 133 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~-~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~ 211 (732)
.+.++.+-|||..|.... |+ .++++|...|..+..-. .......++||.||+.++-...+.
T Consensus 14 ci~d~afkPDGsqL~lAA---g~---rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK------------ 75 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA---GS---RLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADK------------ 75 (1081)
T ss_pred chheeEECCCCceEEEec---CC---EEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCce------------
Confidence 577899999999998774 33 79999999888653221 111247899999999887543221
Q ss_pred ccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEE
Q 004766 212 TDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCI 261 (732)
Q Consensus 212 ~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~ 261 (732)
-|.+|. .+-+.++-|...+ .+--..|.|-.+.|+-.+
T Consensus 76 -------~VI~W~---~klEG~LkYSH~D---~IQCMsFNP~~h~LasCs 112 (1081)
T KOG1538|consen 76 -------SVIIWT---SKLEGILKYSHND---AIQCMSFNPITHQLASCS 112 (1081)
T ss_pred -------eEEEec---ccccceeeeccCC---eeeEeecCchHHHhhhcc
Confidence 233333 2233445554433 233456778777776554
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.028 Score=55.85 Aligned_cols=179 Identities=12% Similarity=0.082 Sum_probs=97.7
Q ss_pred cCCceEEEEEEECCCCceeccccccee-eeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCCcccEEEEEECCCCCCC
Q 004766 153 SGSDWATIKLMRIEDQIVEADALSWFK-FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSE 231 (732)
Q Consensus 153 ~G~e~~~i~v~dl~~g~~~~~~~~~~~-~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~ 231 (732)
.|+...+++|||+++|+++..-+..+. .-++.++ +| .++-.+ +.+.+.+|++.++...
T Consensus 252 sGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~-ng-~mvtcS-------------------kDrsiaVWdm~sps~i 310 (499)
T KOG0281|consen 252 SGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFS-NG-YMVTCS-------------------KDRSIAVWDMASPTDI 310 (499)
T ss_pred ecCCCceEEEEeccCCchhhHHhhhcceeEEEEEe-CC-EEEEec-------------------CCceeEEEeccCchHH
Confidence 355568999999999998865555442 3567887 44 333332 3345777787765321
Q ss_pred Ce-EEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCCCCcEEeeecccceEEEEE
Q 004766 232 DI-LCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIA 310 (732)
Q Consensus 232 ~~-~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s 310 (732)
.. -|..+ +...+..+ .-|.|+|+-.+.+ ..|-+++..+.+ ..+...+....+...
T Consensus 311 t~rrVLvG--HrAaVNvV--dfd~kyIVsASgD-----RTikvW~~st~e--------------fvRtl~gHkRGIACl- 366 (499)
T KOG0281|consen 311 TLRRVLVG--HRAAVNVV--DFDDKYIVSASGD-----RTIKVWSTSTCE--------------FVRTLNGHKRGIACL- 366 (499)
T ss_pred HHHHHHhh--hhhheeee--ccccceEEEecCC-----ceEEEEecccee--------------eehhhhcccccceeh-
Confidence 00 01111 11111223 3367777655433 336677777743 122222333333322
Q ss_pred ecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecCCEEEEEEecCCeeEEEEEeCCCCce
Q 004766 311 NDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSL 385 (732)
Q Consensus 311 ~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~~l~~~~~~~g~~~l~~~d~~~g~~ 385 (732)
...++|++... ....|-.+|+..+...+.|-.++ ..+..+.+.. .-+++..-+| .|.+||+.++..
T Consensus 367 QYr~rlvVSGS---SDntIRlwdi~~G~cLRvLeGHE--eLvRciRFd~--krIVSGaYDG--kikvWdl~aald 432 (499)
T KOG0281|consen 367 QYRDRLVVSGS---SDNTIRLWDIECGACLRVLEGHE--ELVRCIRFDN--KRIVSGAYDG--KIKVWDLQAALD 432 (499)
T ss_pred hccCeEEEecC---CCceEEEEeccccHHHHHHhchH--HhhhheeecC--ceeeeccccc--eEEEEecccccC
Confidence 22445555332 23468888988887555454443 4566666543 4455665664 788999876654
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.01 Score=65.50 Aligned_cols=91 Identities=14% Similarity=0.149 Sum_probs=66.5
Q ss_pred eEEEEEEECCCCceecccc-cceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCCcccEEEEEECCCCCCCCeEE
Q 004766 157 WATIKLMRIEDQIVEADAL-SWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILC 235 (732)
Q Consensus 157 ~~~i~v~dl~~g~~~~~~~-~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v 235 (732)
...|.++|+.|.+...+.. .+.+...++||||||+|+..+.|. .|+.||+-|+.--|.+.
T Consensus 555 df~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~-------------------tIr~wDlpt~~lID~~~ 615 (910)
T KOG1539|consen 555 DFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDS-------------------TIRTWDLPTGTLIDGLL 615 (910)
T ss_pred ceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCC-------------------cEEEEeccCcceeeeEe
Confidence 4679999998877554332 233468999999999999887543 69999999887666666
Q ss_pred EecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEe
Q 004766 236 WKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCD 275 (732)
Q Consensus 236 ~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d 275 (732)
++.+ ..++.+||+|.+|+.+..+ .+.||++.
T Consensus 616 vd~~-----~~sls~SPngD~LAT~Hvd----~~gIylWs 646 (910)
T KOG1539|consen 616 VDSP-----CTSLSFSPNGDFLATVHVD----QNGIYLWS 646 (910)
T ss_pred cCCc-----ceeeEECCCCCEEEEEEec----CceEEEEE
Confidence 5432 2578999999999876543 34577764
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.086 Score=53.89 Aligned_cols=221 Identities=10% Similarity=0.004 Sum_probs=117.9
Q ss_pred EEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceec-ccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCc
Q 004766 133 ALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEA-DALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTE 211 (732)
Q Consensus 133 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~-~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~ 211 (732)
.+....+-+|++++.-..+ ...+++|++..++.+. .+....+...+-+.-+...++-.
T Consensus 221 ~it~~d~d~~~~~~iAas~-----d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsg---------------- 279 (459)
T KOG0288|consen 221 NITSIDFDSDNKHVIAASN-----DKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSG---------------- 279 (459)
T ss_pred CcceeeecCCCceEEeecC-----CCceeeeeccchhhhhhhcccccceeeehhhccccceeec----------------
Confidence 4677889999998764432 2478999998776432 22222234555565554443222
Q ss_pred ccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCC
Q 004766 212 TDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDG 291 (732)
Q Consensus 212 ~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 291 (732)
....++..|++.........+..... .++..+ ...++ +.+. ...|..+|..+..
T Consensus 280 ---s~DRtiK~WDl~k~~C~kt~l~~S~c-----nDI~~~---~~~~~--SgH~--DkkvRfwD~Rs~~----------- 333 (459)
T KOG0288|consen 280 ---SADRTIKLWDLQKAYCSKTVLPGSQC-----NDIVCS---ISDVI--SGHF--DKKVRFWDIRSAD----------- 333 (459)
T ss_pred ---cccchhhhhhhhhhheeccccccccc-----cceEec---ceeee--eccc--ccceEEEeccCCc-----------
Confidence 23456777887764433222222211 123333 12222 2232 3447788865521
Q ss_pred CCCcEEeeecccceEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCC---CCceeEEEEecCCEEEEEEe
Q 004766 292 LLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAE---RDVLESATAVNLNQMIVSYL 368 (732)
Q Consensus 292 ~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~---~~~l~~~~~~~~~~l~~~~~ 368 (732)
+...+..+....-...+++|..+.-.+.+ ..|-.+|+.+.. +...+.... ......+.+++++..+++..
T Consensus 334 --~~~sv~~gg~vtSl~ls~~g~~lLsssRD----dtl~viDlRt~e-I~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS 406 (459)
T KOG0288|consen 334 --KTRSVPLGGRVTSLDLSMDGLELLSSSRD----DTLKVIDLRTKE-IRQTFSAEGFKCASDWTRVVFSPDGSYVAAGS 406 (459)
T ss_pred --eeeEeecCcceeeEeeccCCeEEeeecCC----Cceeeeeccccc-EEEEeeccccccccccceeEECCCCceeeecc
Confidence 11111111111112367788777654322 246677887765 232222210 12245567788777777777
Q ss_pred cCCeeEEEEEeCCCCceeeecccc--cceeeEeecccCCcEEE
Q 004766 369 SDVKYVLQIRDLKNGSLLHQLPIE--IGSVNAISARREDSVVF 409 (732)
Q Consensus 369 ~~g~~~l~~~d~~~g~~~~~l~~~--~g~v~~~~~s~d~~~l~ 409 (732)
.+| .|++|++.+|+....+..+ +..+.++++++.|..++
T Consensus 407 ~dg--sv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Ll 447 (459)
T KOG0288|consen 407 ADG--SVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLL 447 (459)
T ss_pred CCC--cEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhh
Confidence 774 7999999988875556544 22466777777766543
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.63 Score=48.54 Aligned_cols=200 Identities=14% Similarity=0.074 Sum_probs=101.6
Q ss_pred CCEEEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCcee----cc-------------c--ccceeeeeEEEEeCCc
Q 004766 130 GTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVE----AD-------------A--LSWFKFSSIAWTHDSK 190 (732)
Q Consensus 130 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~----~~-------------~--~~~~~~~~~~WspDg~ 190 (732)
+..++-.+.+|||++++. +.+.+| +|--|++.+|... +. . ......-.++-|+||+
T Consensus 141 H~~s~~~vals~d~~~~f-sask~g----~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk 215 (479)
T KOG0299|consen 141 HQLSVTSVALSPDDKRVF-SASKDG----TILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK 215 (479)
T ss_pred ccCcceEEEeecccccee-ecCCCc----ceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc
Confidence 345577889999998774 444333 6777777776522 10 0 0001124678899999
Q ss_pred EEEEEEecCCCCCCCCCCCCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEE
Q 004766 191 GFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNK 270 (732)
Q Consensus 191 ~l~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~ 270 (732)
+|++. ++.+.|..|+..|.+. +-++.. +..-+.+++|-..-..|+..+.+. .-.
T Consensus 216 ylatg-------------------g~d~~v~Iw~~~t~eh--v~~~~g--hr~~V~~L~fr~gt~~lys~s~Dr---svk 269 (479)
T KOG0299|consen 216 YLATG-------------------GRDRHVQIWDCDTLEH--VKVFKG--HRGAVSSLAFRKGTSELYSASADR---SVK 269 (479)
T ss_pred EEEec-------------------CCCceEEEecCcccch--hhcccc--cccceeeeeeecCccceeeeecCC---ceE
Confidence 99875 3455677888777543 223322 233345666654444444333322 234
Q ss_pred EEEEeCCCCCCCcccccccCCCCCcEEeeecccceEEEEEe-cCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCC
Q 004766 271 VYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIAN-DDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAER 349 (732)
Q Consensus 271 l~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~-dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~ 349 (732)
+|.++--+- ...+. +....+..++. +-.+++-+..++. ..+||.+. .. -+.++-.. .
T Consensus 270 vw~~~~~s~---------------vetly-GHqd~v~~IdaL~reR~vtVGgrDr-T~rlwKi~--ee--sqlifrg~-~ 327 (479)
T KOG0299|consen 270 VWSIDQLSY---------------VETLY-GHQDGVLGIDALSRERCVTVGGRDR-TVRLWKIP--EE--SQLIFRGG-E 327 (479)
T ss_pred EEehhHhHH---------------HHHHh-CCccceeeechhcccceEEeccccc-eeEEEecc--cc--ceeeeeCC-C
Confidence 454432110 11111 11111211221 1233443333332 33455552 21 13333322 4
Q ss_pred CceeEEEEecCCEEEEEEecCCeeEEEEEeCCCCce
Q 004766 350 DVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSL 385 (732)
Q Consensus 350 ~~l~~~~~~~~~~l~~~~~~~g~~~l~~~d~~~g~~ 385 (732)
..+..+++.++ .-+++...+| .|++|++...+.
T Consensus 328 ~sidcv~~In~-~HfvsGSdnG--~IaLWs~~KKkp 360 (479)
T KOG0299|consen 328 GSIDCVAFIND-EHFVSGSDNG--SIALWSLLKKKP 360 (479)
T ss_pred CCeeeEEEecc-cceeeccCCc--eEEEeeecccCc
Confidence 57888888874 4455677774 789999865443
|
|
| >PF01674 Lipase_2: Lipase (class 2); InterPro: IPR002918 Lipases or triacylglycerol acylhydrolases hydrolyse ester bonds in triacylglycerol giving diacylglycerol, monoacylglycerol, glycerol and free fatty acids [] | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.014 Score=56.61 Aligned_cols=89 Identities=13% Similarity=0.110 Sum_probs=46.3
Q ss_pred EEEEcCCCCccCCCCcChhHHHHHHhcCcE---EEEEcccCCCCCchhHHhcccccCCccHHHHHHHHHHHHHHcCCCCC
Q 004766 484 LLYGYGGFNISVTPSFSVSRTILMRHLGAV---FCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQS 560 (732)
Q Consensus 484 vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~---v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~ 560 (732)
||++||-.+. ....|...... |.++||. +...++-.... . ....... ........+.+.++.+.+. +-.
T Consensus 4 VVlVHG~~~~-~~~~w~~~~~~-l~~~GY~~~~vya~tyg~~~~-~-~~~~~~~--~~~~~~~~l~~fI~~Vl~~--TGa 75 (219)
T PF01674_consen 4 VVLVHGTGGN-AYSNWSTLAPY-LKAAGYCDSEVYALTYGSGNG-S-PSVQNAH--MSCESAKQLRAFIDAVLAY--TGA 75 (219)
T ss_dssp EEEE--TTTT-TCGGCCHHHHH-HHHTT--CCCEEEE--S-CCH-H-THHHHHH--B-HHHHHHHHHHHHHHHHH--HT-
T ss_pred EEEECCCCcc-hhhCHHHHHHH-HHHcCCCcceeEeccCCCCCC-C-Ccccccc--cchhhHHHHHHHHHHHHHh--hCC
Confidence 7889997653 24456654444 4449999 78888843322 1 1111111 1122235555556655543 566
Q ss_pred CcEEEEecChhHHHHHHHHhh
Q 004766 561 RKLCIEGGSNGGLLVGACINQ 581 (732)
Q Consensus 561 ~~i~i~G~S~GG~l~~~~~~~ 581 (732)
||=|+|||+||.++-.++..
T Consensus 76 -kVDIVgHS~G~~iaR~yi~~ 95 (219)
T PF01674_consen 76 -KVDIVGHSMGGTIARYYIKG 95 (219)
T ss_dssp --EEEEEETCHHHHHHHHHHH
T ss_pred -EEEEEEcCCcCHHHHHHHHH
Confidence 99999999999988887753
|
This group of lipases has been called class 2 as they are not clearly related to other lipase families, and includes LipA and LipB from Bacillus subtilis [] and uncharacterised proteins from Caenorhabditis.; PDB: 2VTV_B 2X76_A 2X5X_A 2QXU_A 3QMM_A 1I6W_A 3D2C_J 2QXT_B 1R50_A 1T2N_A .... |
| >PF00450 Peptidase_S10: Serine carboxypeptidase; InterPro: IPR001563 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.0086 Score=65.33 Aligned_cols=141 Identities=16% Similarity=0.082 Sum_probs=81.8
Q ss_pred EEEEccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCc---------C--------hhHHHHHHhcCcEEEE
Q 004766 454 VFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSF---------S--------VSRTILMRHLGAVFCI 516 (732)
Q Consensus 454 ~~~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~---------~--------~~~~~~l~~~G~~v~~ 516 (732)
+.+....+ ..+..|++..++ .....|+||++.||||.+....+ . ..-..|. +-..++.
T Consensus 16 l~~~~~~~-~~lfyw~~~s~~--~~~~~Pl~~wlnGGPG~SS~~g~f~e~GP~~~~~~~~~~l~~n~~sW~--~~an~l~ 90 (415)
T PF00450_consen 16 LPVNDNEN-AHLFYWFFESRN--DPEDDPLILWLNGGPGCSSMWGLFGENGPFRINPDGPYTLEDNPYSWN--KFANLLF 90 (415)
T ss_dssp EEECTTTT-EEEEEEEEE-SS--GGCSS-EEEEEE-TTTB-THHHHHCTTSSEEEETTSTSEEEE-TT-GG--GTSEEEE
T ss_pred EecCCCCC-cEEEEEEEEeCC--CCCCccEEEEecCCceeccccccccccCceEEeecccccccccccccc--cccceEE
Confidence 44444466 788888886665 34678999999999998653110 0 0012333 3477888
Q ss_pred EcccCCCCCchhHHhcccccCCccHHHHHHHHHHHH-HHcCCCCCCcEEEEecChhHHHHHHHHh----hC------CCe
Q 004766 517 ANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYL-ISAGYTQSRKLCIEGGSNGGLLVGACIN----QR------PDL 585 (732)
Q Consensus 517 ~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l-~~~~~~d~~~i~i~G~S~GG~l~~~~~~----~~------p~~ 585 (732)
+|.+-|.||...-........-....+|+..++..+ .+........+.|.|-|+||..+..++. +. +=.
T Consensus 91 iD~PvGtGfS~~~~~~~~~~~~~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYgG~yvP~~a~~i~~~~~~~~~~~in 170 (415)
T PF00450_consen 91 IDQPVGTGFSYGNDPSDYVWNDDQAAEDLYEFLQQFFQKFPEYRSNPLYIAGESYGGHYVPALASYILQQNKKGDQPKIN 170 (415)
T ss_dssp E--STTSTT-EESSGGGGS-SHHHHHHHHHHHHHHHHHHSGGGTTSEEEEEEETTHHHHHHHHHHHHHHHTCC--STTSE
T ss_pred EeecCceEEeeccccccccchhhHHHHHHHHHHHHhhhhhhhccCCCEEEEccccccccchhhHHhhhhccccccccccc
Confidence 898877777554332221112233456666666543 3444445668999999999987655544 33 235
Q ss_pred eeEEEEcCCccccc
Q 004766 586 FGCALAHVGVMDML 599 (732)
Q Consensus 586 f~a~v~~~p~~d~~ 599 (732)
+++++++.|++|..
T Consensus 171 LkGi~IGng~~dp~ 184 (415)
T PF00450_consen 171 LKGIAIGNGWIDPR 184 (415)
T ss_dssp EEEEEEESE-SBHH
T ss_pred cccceecCcccccc
Confidence 89999999988763
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S10 (clan SC). The type example is carboxypeptidase Y from Saccharomyces cerevisiae (Baker's yeast) []. All known carboxypeptidases are either metallo carboxypeptidases or serine carboxypeptidases (3.4.16.5 from EC and 3.4.16.6 from EC). The catalytic activity of the serine carboxypeptidases, like that of the trypsin family serine proteases, is provided by a charge relay system involving an aspartic acid residue hydrogen-bonded to a histidine, which is itself hydrogen-bonded to a serine []. The sequences surrounding the active site serine and histidine residues are highly conserved in all the serine carboxypeptidases.; GO: 0004185 serine-type carboxypeptidase activity, 0006508 proteolysis; PDB: 1AC5_A 1WHS_B 3SC2_B 1WHT_A 1BCR_A 1BCS_A 1GXS_A 1IVY_A 1WPX_A 1YSC_A .... |
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.9 Score=44.71 Aligned_cols=59 Identities=3% Similarity=-0.048 Sum_probs=36.9
Q ss_pred eEEECCCCcEEEEEEeccCCceEEEEEEECCCCceec--ccccce-eeeeEEEEeCCcEEEEEEe
Q 004766 136 KVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEA--DALSWF-KFSSIAWTHDSKGFFYSRY 197 (732)
Q Consensus 136 ~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~--~~~~~~-~~~~~~WspDg~~l~y~~~ 197 (732)
++.++|--.+-.+...+.|. ...++|..++.... ...++- -++.-.|||||+.||-+.+
T Consensus 72 gi~~~p~~~ravafARrPGt---f~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEn 133 (366)
T COG3490 72 GIAFHPALPRAVAFARRPGT---FAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATEN 133 (366)
T ss_pred CeecCCCCcceEEEEecCCc---eEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecC
Confidence 67788876664444445564 56789998877321 112221 2466789999987766543
|
|
| >PF03096 Ndr: Ndr family; InterPro: IPR004142 This family consists of proteins from different gene families: Ndr1/RTP/Drg1, Ndr2, and Ndr3 | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.14 Score=51.05 Aligned_cols=128 Identities=10% Similarity=0.023 Sum_probs=74.1
Q ss_pred EEccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCc---cCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhc
Q 004766 456 VPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNI---SVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKG 532 (732)
Q Consensus 456 ~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~---~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~ 532 (732)
++++-| .|.+.+.-. +++..|+||..|--.-. +....|+.+-.+.+. ..+.++=+|.+|..+-.......
T Consensus 4 v~t~~G--~v~V~v~G~----~~~~kp~ilT~HDvGlNh~scF~~ff~~~~m~~i~-~~f~i~Hi~aPGqe~ga~~~p~~ 76 (283)
T PF03096_consen 4 VETPYG--SVHVTVQGD----PKGNKPAILTYHDVGLNHKSCFQGFFNFEDMQEIL-QNFCIYHIDAPGQEEGAATLPEG 76 (283)
T ss_dssp EEETTE--EEEEEEESS------TTS-EEEEE--TT--HHHHCHHHHCSHHHHHHH-TTSEEEEEE-TTTSTT-----TT
T ss_pred eccCce--EEEEEEEec----CCCCCceEEEeccccccchHHHHHHhcchhHHHHh-hceEEEEEeCCCCCCCccccccc
Confidence 445555 566655532 23478999999974211 123334444456677 78999999999987633332221
Q ss_pred ccccCCccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCcc
Q 004766 533 GALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVM 596 (732)
Q Consensus 533 ~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~ 596 (732)
..-.+++++.+.+..+.+.--+ +.+..+|--+|+++-+..+..+|++.-+.|+..|..
T Consensus 77 ----y~yPsmd~LAe~l~~Vl~~f~l--k~vIg~GvGAGAnIL~rfAl~~p~~V~GLiLvn~~~ 134 (283)
T PF03096_consen 77 ----YQYPSMDQLAEMLPEVLDHFGL--KSVIGFGVGAGANILARFALKHPERVLGLILVNPTC 134 (283)
T ss_dssp ---------HHHHHCTHHHHHHHHT-----EEEEEETHHHHHHHHHHHHSGGGEEEEEEES---
T ss_pred ----ccccCHHHHHHHHHHHHHhCCc--cEEEEEeeccchhhhhhccccCccceeEEEEEecCC
Confidence 1234566666555555544112 479999999999999999999999999999887754
|
Their similarity was previously noted []. The precise molecular and cellular function of members of this family is still unknown, yet they are known to be involved in cellular differentiation events. The Ndr1 group was the first to be discovered. Their expression is repressed by the proto-oncogenes N-myc and c-myc, and in line with this observation, Ndr1 protein expression is down-regulated in neoplastic cells, and is reactivated when differentiation is induced by chemicals such as retinoic acid. Ndr2 and Ndr3 expression is not under the control of N-myc or c-myc. Ndr1 expression is also activated by several chemicals: tunicamycin and homocysteine induce Ndr1 in human umbilical endothelial cells; nickel induces Ndr1 in several cell types. Members of this family are found in wide variety of multicellular eukaryotes, including an Ndr1 type protein in Helianthus annuus (Common sunflower), known as Sf21. Interestingly, the highest scoring matches in the noise are all alpha/beta hydrolases (IPR000073 from INTERPRO), suggesting that this family may have an enzymatic function.; PDB: 2QMQ_A 2XMR_B 2XMQ_B 2XMS_A. |
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.97 Score=47.05 Aligned_cols=201 Identities=12% Similarity=0.087 Sum_probs=114.3
Q ss_pred eeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCCcccEEEEEECCCCCCC-----CeEEEecCCCCeeEEEeEEecCCc
Q 004766 181 SSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSE-----DILCWKDPEHPKYIFSGHVTEDGQ 255 (732)
Q Consensus 181 ~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~-----~~~v~~~~~~~~~~~~~~~SpDg~ 255 (732)
.+++|++.-..-+.+. .....|.+|++.....+ ...+|..- ...+..++|.+-.+
T Consensus 181 ~glsWn~~~~g~Lls~------------------~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h--~~~VeDV~~h~~h~ 240 (422)
T KOG0264|consen 181 YGLSWNRQQEGTLLSG------------------SDDHTICLWDINAESKEDKVVDPKTIFSGH--EDVVEDVAWHPLHE 240 (422)
T ss_pred cccccccccceeEeec------------------cCCCcEEEEeccccccCCccccceEEeecC--Ccceehhhccccch
Confidence 5688988766655553 23456888888654432 23344432 23456788999888
Q ss_pred EEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCCCCcEEeeecccceE--EEEEecCCeEEEEeCCCCCCceEEEEe
Q 004766 256 YLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQY--EVIANDDTVFTFLTNKDAPKYKIIRVD 333 (732)
Q Consensus 256 ~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~s~dg~~l~~~s~~~~~~~~l~~~d 333 (732)
.|+....++ ..+.++|+.+.+. . ...........+ ..|.|-+..++.... ....|.++|
T Consensus 241 ~lF~sv~dd----~~L~iwD~R~~~~-----------~-~~~~~~ah~~~vn~~~fnp~~~~ilAT~S---~D~tV~LwD 301 (422)
T KOG0264|consen 241 DLFGSVGDD----GKLMIWDTRSNTS-----------K-PSHSVKAHSAEVNCVAFNPFNEFILATGS---ADKTVALWD 301 (422)
T ss_pred hhheeecCC----CeEEEEEcCCCCC-----------C-CcccccccCCceeEEEeCCCCCceEEecc---CCCcEEEee
Confidence 887666443 5688889875211 1 111222222222 247776665554332 245799999
Q ss_pred CCCCC-CceEeccCCCCCceeEEEEecC-CEEEEEEecCCeeEEEEEeCCC-Cceee---------e-cccc---cceee
Q 004766 334 LKEPN-DWFEVIPEAERDVLESATAVNL-NQMIVSYLSDVKYVLQIRDLKN-GSLLH---------Q-LPIE---IGSVN 397 (732)
Q Consensus 334 ~~~~~-~~~~l~~~~~~~~l~~~~~~~~-~~l~~~~~~~g~~~l~~~d~~~-g~~~~---------~-l~~~---~g~v~ 397 (732)
+.... ....+-.+ +..+-.+.|+++ ..+++++..++ ++.+||+.. |+... + |-.+ ...|.
T Consensus 302 lRnL~~~lh~~e~H--~dev~~V~WSPh~etvLASSg~D~--rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~ 377 (422)
T KOG0264|consen 302 LRNLNKPLHTFEGH--EDEVFQVEWSPHNETVLASSGTDR--RLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVS 377 (422)
T ss_pred chhcccCceeccCC--CcceEEEEeCCCCCceeEecccCC--cEEEEeccccccccChhhhccCCcceeEEecCcccccc
Confidence 98765 22233233 355778999985 56888877774 677888741 22100 0 1111 23456
Q ss_pred EeecccCCcEEEEEEecCCCCceEEEEECC
Q 004766 398 AISARREDSVVFISFTSFLIPGIVYQCNLK 427 (732)
Q Consensus 398 ~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~ 427 (732)
.++++|..+.+..+.+.. ..+-++.++
T Consensus 378 DfsWnp~ePW~I~SvaeD---N~LqIW~~s 404 (422)
T KOG0264|consen 378 DFSWNPNEPWTIASVAED---NILQIWQMA 404 (422)
T ss_pred cccCCCCCCeEEEEecCC---ceEEEeecc
Confidence 677778777776666554 345555443
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.16 Score=51.94 Aligned_cols=172 Identities=14% Similarity=0.064 Sum_probs=91.2
Q ss_pred cCCceEEEEEEECCCCceecccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCCcccEEEEEECCCCCCCC
Q 004766 153 SGSDWATIKLMRIEDQIVEADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSED 232 (732)
Q Consensus 153 ~G~e~~~i~v~dl~~g~~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~ 232 (732)
+|+...+|.+||+..+...........-..++-+ . ..+++ .....+|..|++-++.
T Consensus 278 sgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~--~-~~~~S------------------gH~DkkvRfwD~Rs~~--- 333 (459)
T KOG0288|consen 278 SGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCS--I-SDVIS------------------GHFDKKVRFWDIRSAD--- 333 (459)
T ss_pred eccccchhhhhhhhhhheeccccccccccceEec--c-eeeee------------------cccccceEEEeccCCc---
Confidence 3555678999999876644322221111233332 1 12222 1233468888865542
Q ss_pred eEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCCCCcEE--eeecccceEEEEE
Q 004766 233 ILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVK--LIDGFDAQYEVIA 310 (732)
Q Consensus 233 ~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~~~~~s 310 (732)
.+.+-+- .+-+.++..|+||..|+..+.+ ..+-++|+.+.+.. .+... .....+-.-.+||
T Consensus 334 -~~~sv~~-gg~vtSl~ls~~g~~lLsssRD-----dtl~viDlRt~eI~----------~~~sA~g~k~asDwtrvvfS 396 (459)
T KOG0288|consen 334 -KTRSVPL-GGRVTSLDLSMDGLELLSSSRD-----DTLKVIDLRTKEIR----------QTFSAEGFKCASDWTRVVFS 396 (459)
T ss_pred -eeeEeec-CcceeeEeeccCCeEEeeecCC-----CceeeeecccccEE----------EEeeccccccccccceeEEC
Confidence 2222222 2356789999999999766432 23667787763200 00000 0111122223699
Q ss_pred ecCCeEEEEeCCCCCCceEEEEeCCCCCCceEecc-CCCCCceeEEEEecCCEEEEEEecC
Q 004766 311 NDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIP-EAERDVLESATAVNLNQMIVSYLSD 370 (732)
Q Consensus 311 ~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~-~~~~~~l~~~~~~~~~~l~~~~~~~ 370 (732)
|++++++- +..++.|+.+++.+++ ...+.. ...+..|..+.|.+.+.-++....+
T Consensus 397 pd~~YvaA----GS~dgsv~iW~v~tgK-lE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~ 452 (459)
T KOG0288|consen 397 PDGSYVAA----GSADGSVYIWSVFTGK-LEKVLSLSTSNAAITSLSWNPSGSGLLSADKQ 452 (459)
T ss_pred CCCceeee----ccCCCcEEEEEccCce-EEEEeccCCCCcceEEEEEcCCCchhhcccCC
Confidence 99887663 3446789999999887 333332 2222357788888644333344444
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.088 Score=54.01 Aligned_cols=181 Identities=10% Similarity=0.071 Sum_probs=95.8
Q ss_pred eeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEE
Q 004766 181 SSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMC 260 (732)
Q Consensus 181 ~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~ 260 (732)
..+++++||+.++.... ...++.|+.-+.. ++.++..+..-+-++.|||||+.|+..
T Consensus 148 k~vaf~~~gs~latgg~-------------------dg~lRv~~~Ps~~----t~l~e~~~~~eV~DL~FS~dgk~lasi 204 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGT-------------------DGTLRVWEWPSML----TILEEIAHHAEVKDLDFSPDGKFLASI 204 (398)
T ss_pred eEEEEcCCCCEeeeccc-------------------cceEEEEecCcch----hhhhhHhhcCccccceeCCCCcEEEEe
Confidence 45788888887776532 2245555543221 222233333344588999999999887
Q ss_pred EecCCcceEEEEEEeCCCCCCCcccccccCCCCCcEEeeecccceE----EEEEec--CCeEEEEeCCCCCCceEEEEeC
Q 004766 261 IEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQY----EVIAND--DTVFTFLTNKDAPKYKIIRVDL 334 (732)
Q Consensus 261 ~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~s~d--g~~l~~~s~~~~~~~~l~~~d~ 334 (732)
+.+ ...+|+..++. ++..++. ++..+ ..|+.| +..+++.++.. +...+..+++
T Consensus 205 g~d------~~~VW~~~~g~-------------~~a~~t~-~~k~~~~~~cRF~~d~~~~~l~laa~~~-~~~~v~~~~~ 263 (398)
T KOG0771|consen 205 GAD------SARVWSVNTGA-------------ALARKTP-FSKDEMFSSCRFSVDNAQETLRLAASQF-PGGGVRLCDI 263 (398)
T ss_pred cCC------ceEEEEeccCc-------------hhhhcCC-cccchhhhhceecccCCCceEEEEEecC-CCCceeEEEe
Confidence 643 24456666641 1222221 11111 235544 34555555542 2223333443
Q ss_pred C--CCC---CceEeccCCCCCceeEEEEecCCEEEEEEecCCeeEEEEEeCCCCceeeecc-cccceeeEeecccCCcEE
Q 004766 335 K--EPN---DWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLP-IEIGSVNAISARREDSVV 408 (732)
Q Consensus 335 ~--~~~---~~~~l~~~~~~~~l~~~~~~~~~~l~~~~~~~g~~~l~~~d~~~g~~~~~l~-~~~g~v~~~~~s~d~~~l 408 (732)
. .+. .++..+.. ...++.+.++.++++++....+| .+-+++..+=+...-++ .+.+.|..+.++||.+.+
T Consensus 264 ~~w~~~~~l~~~~~~~~--~~siSsl~VS~dGkf~AlGT~dG--sVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~ 339 (398)
T KOG0771|consen 264 SLWSGSNFLRLRKKIKR--FKSISSLAVSDDGKFLALGTMDG--SVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYL 339 (398)
T ss_pred eeeccccccchhhhhhc--cCcceeEEEcCCCcEEEEeccCC--cEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcc
Confidence 2 221 12222222 24688899998777777777665 45566654322222222 236678889999988755
Q ss_pred E
Q 004766 409 F 409 (732)
Q Consensus 409 ~ 409 (732)
.
T Consensus 340 ~ 340 (398)
T KOG0771|consen 340 A 340 (398)
T ss_pred c
Confidence 4
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.13 Score=51.99 Aligned_cols=118 Identities=15% Similarity=0.099 Sum_probs=78.4
Q ss_pred CEEEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCC
Q 004766 131 TAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGT 210 (732)
Q Consensus 131 ~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~ 210 (732)
.-.++.+.|++ .-.+|+.+ -..+|++|||++|........+..+..+..+|..+.|+..+.+
T Consensus 260 t~~Vs~V~w~d--~~v~yS~S----wDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssd------------ 321 (423)
T KOG0313|consen 260 TEPVSSVVWSD--ATVIYSVS----WDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSD------------ 321 (423)
T ss_pred ccceeeEEEcC--CCceEeec----ccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCC------------
Confidence 34688999998 44778763 2369999999999865443444346788899988877765432
Q ss_pred cccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCC
Q 004766 211 ETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSA 278 (732)
Q Consensus 211 ~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~ 278 (732)
..+.+|+-.++... +.......+..|+.++.|+|-..++++..+.. +.+.++|+.+
T Consensus 322 -------r~irl~DPR~~~gs-~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D----~t~klWDvRS 377 (423)
T KOG0313|consen 322 -------RHIRLWDPRTGDGS-VVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYD----NTVKLWDVRS 377 (423)
T ss_pred -------CceeecCCCCCCCc-eeEEeeecchhhhhheecCCCCceEEEEEecC----CeEEEEEecc
Confidence 24667776555322 23333333455888999999999998876543 3355667655
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.69 Score=46.40 Aligned_cols=168 Identities=12% Similarity=-0.018 Sum_probs=90.1
Q ss_pred eeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEE
Q 004766 180 FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVM 259 (732)
Q Consensus 180 ~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~ 259 (732)
..++++|+||+.++++..+ .....|+....+.... .+... .-...++|+++|...++
T Consensus 26 ~~s~AvS~dg~~~A~v~~~----------------~~~~~L~~~~~~~~~~---~~~~g----~~l~~PS~d~~g~~W~v 82 (253)
T PF10647_consen 26 VTSPAVSPDGSRVAAVSEG----------------DGGRSLYVGPAGGPVR---PVLTG----GSLTRPSWDPDGWVWTV 82 (253)
T ss_pred ccceEECCCCCeEEEEEEc----------------CCCCEEEEEcCCCcce---eeccC----CccccccccCCCCEEEE
Confidence 4789999999999998722 2334688877665432 22222 13458999999665544
Q ss_pred EEecCCcceEEEEEEeCCCCCCCcccccccCCCCCcEEeee-cc--cceEEEEEecCCeEEEEeCCCCCCceEEEEeCCC
Q 004766 260 CIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLID-GF--DAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKE 336 (732)
Q Consensus 260 ~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l~~-~~--~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~ 336 (732)
... .. ...++. +..++.. . ...+-. .. ...-..+||||.+++++...++ ..+|+..-+..
T Consensus 83 ~~~-~~--~~~~~~-~~~~g~~-----------~-~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~-~~~v~va~V~r 145 (253)
T PF10647_consen 83 DDG-SG--GVRVVR-DSASGTG-----------E-PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGG-GGRVYVAGVVR 145 (253)
T ss_pred EcC-CC--ceEEEE-ecCCCcc-----------e-eEEecccccCCceEEEEECCCCcEEEEEEecCC-CCeEEEEEEEe
Confidence 332 11 222332 3222210 0 011111 11 1111248999999999886543 35677664421
Q ss_pred ---C--C---CceEeccCCCCCceeEEEEecCCEEEEEEecCCeeEEEEEeCCCCceeeec
Q 004766 337 ---P--N---DWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQL 389 (732)
Q Consensus 337 ---~--~---~~~~l~~~~~~~~l~~~~~~~~~~l~~~~~~~g~~~l~~~d~~~g~~~~~l 389 (732)
+ . ....+.+.. ...+.++.|.+++.|++.....+......+..+ |...+.+
T Consensus 146 ~~~g~~~~l~~~~~~~~~~-~~~v~~v~W~~~~~L~V~~~~~~~~~~~~v~~d-G~~~~~l 204 (253)
T PF10647_consen 146 DGDGVPRRLTGPRRVAPPL-LSDVTDVAWSDDSTLVVLGRSAGGPVVRLVSVD-GGPSTPL 204 (253)
T ss_pred CCCCCcceeccceEecccc-cCcceeeeecCCCEEEEEeCCCCCceeEEEEcc-CCccccc
Confidence 2 1 122333221 345678999987788777766654433345555 4332444
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.20 E-value=1.1 Score=49.99 Aligned_cols=231 Identities=15% Similarity=0.082 Sum_probs=122.6
Q ss_pred EEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCccc
Q 004766 134 LIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETD 213 (732)
Q Consensus 134 ~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~ 213 (732)
+..+.+.- |..+.++ |+...+++|||..+|+.+....+... ..-.-.-+. .+...
T Consensus 252 V~~l~~~~-~~~~lvs----gS~D~t~rvWd~~sg~C~~~l~gh~s-tv~~~~~~~-~~~~s------------------ 306 (537)
T KOG0274|consen 252 VWGLAFPS-GGDKLVS----GSTDKTERVWDCSTGECTHSLQGHTS-SVRCLTIDP-FLLVS------------------ 306 (537)
T ss_pred ceeEEEec-CCCEEEE----EecCCcEEeEecCCCcEEEEecCCCc-eEEEEEccC-ceEee------------------
Confidence 44555543 3334444 33346899999999985432221111 111222122 22222
Q ss_pred CCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCCC
Q 004766 214 SNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLL 293 (732)
Q Consensus 214 ~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~ 293 (732)
..++.+|++|++.++. .+.++.+ +...+..+.. ++..++..+.++ .|-+++..+++
T Consensus 307 gs~D~tVkVW~v~n~~--~l~l~~~--h~~~V~~v~~--~~~~lvsgs~d~-----~v~VW~~~~~~------------- 362 (537)
T KOG0274|consen 307 GSRDNTVKVWDVTNGA--CLNLLRG--HTGPVNCVQL--DEPLLVSGSYDG-----TVKVWDPRTGK------------- 362 (537)
T ss_pred ccCCceEEEEeccCcc--eEEEecc--ccccEEEEEe--cCCEEEEEecCc-----eEEEEEhhhce-------------
Confidence 1356789999998653 3344443 2223334443 466666555433 36667766532
Q ss_pred CcEEeeecccceEEEEEecC-CeEEEEeCCCCCCceEEEEeCCCC-CCceEeccCCCCCceeEEEEecCCEEEEEEecCC
Q 004766 294 PFVKLIDGFDAQYEVIANDD-TVFTFLTNKDAPKYKIIRVDLKEP-NDWFEVIPEAERDVLESATAVNLNQMIVSYLSDV 371 (732)
Q Consensus 294 ~~~~l~~~~~~~~~~~s~dg-~~l~~~s~~~~~~~~l~~~d~~~~-~~~~~l~~~~~~~~l~~~~~~~~~~l~~~~~~~g 371 (732)
.+..+.......+. +..++ .+++= ... +..|..+|+.+. +....+-.+. ..+..+... +.+++....++
T Consensus 363 cl~sl~gH~~~V~s-l~~~~~~~~~S-gs~---D~~IkvWdl~~~~~c~~tl~~h~--~~v~~l~~~--~~~Lvs~~aD~ 433 (537)
T KOG0274|consen 363 CLKSLSGHTGRVYS-LIVDSENRLLS-GSL---DTTIKVWDLRTKRKCIHTLQGHT--SLVSSLLLR--DNFLVSSSADG 433 (537)
T ss_pred eeeeecCCcceEEE-EEecCcceEEe-eee---ccceEeecCCchhhhhhhhcCCc--ccccccccc--cceeEeccccc
Confidence 23344332222222 33445 44442 222 356888999888 5444443333 333333332 45666776664
Q ss_pred eeEEEEEeCCCCceeeecccc-cceeeEeecccCCcEEEEEEecCCCCceEEEEECCCCC
Q 004766 372 KYVLQIRDLKNGSLLHQLPIE-IGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 430 (732)
Q Consensus 372 ~~~l~~~d~~~g~~~~~l~~~-~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~~ 430 (732)
.|.+||..+++.++.+..+ .+.++.+... +..++..+. ...+..+|+.+++
T Consensus 434 --~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~---~~~il~s~~---~~~~~l~dl~~~~ 485 (537)
T KOG0274|consen 434 --TIKLWDAEEGECLRTLEGRHVGGVSALALG---KEEILCSSD---DGSVKLWDLRSGT 485 (537)
T ss_pred --cEEEeecccCceeeeeccCCcccEEEeecC---cceEEEEec---CCeeEEEecccCc
Confidence 8999999888887777763 4666666543 233444333 4567788988875
|
|
| >PF05705 DUF829: Eukaryotic protein of unknown function (DUF829); InterPro: IPR008547 This signature identifies Transmembrane protein 53, that have no known function but are predicted to be integral membrane proteins | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.06 Score=53.68 Aligned_cols=63 Identities=10% Similarity=-0.123 Sum_probs=50.2
Q ss_pred CCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeCCCCCCCCCchHHHHHHHHHHHHH
Q 004766 648 QYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGF 721 (732)
Q Consensus 648 ~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~f 721 (732)
..+|-|.+.+.+|..|++.+..++++..++. |.++....+.+++|...-..+. .+....+.+|
T Consensus 177 ~~~p~lylYS~~D~l~~~~~ve~~~~~~~~~----------G~~V~~~~f~~S~HV~H~r~~p-~~Y~~~v~~f 239 (240)
T PF05705_consen 177 SRCPRLYLYSKADPLIPWRDVEEHAEEARRK----------GWDVRAEKFEDSPHVAHLRKHP-DRYWRAVDEF 239 (240)
T ss_pred CCCCeEEecCCCCcCcCHHHHHHHHHHHHHc----------CCeEEEecCCCCchhhhcccCH-HHHHHHHHhh
Confidence 4578999999999999999999999999987 9999999999999986533222 3444455555
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=96.14 E-value=1.6 Score=43.12 Aligned_cols=107 Identities=8% Similarity=-0.078 Sum_probs=65.8
Q ss_pred CCEEEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceec-ccccceeeeeEEEEeCCc--EEEEEEecCCCCCCCC
Q 004766 130 GTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEA-DALSWFKFSSIAWTHDSK--GFFYSRYPAPKEGKDM 206 (732)
Q Consensus 130 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~-~~~~~~~~~~~~WspDg~--~l~y~~~~~~~~~~~~ 206 (732)
+.+.+....|-|=..=+. . .++-..++.|||..|-+..- ...++ .+.+-+|||=.. .|+-+.
T Consensus 100 Hky~iss~~WyP~DtGmF-t---ssSFDhtlKVWDtnTlQ~a~~F~me~-~VYshamSp~a~sHcLiA~g---------- 164 (397)
T KOG4283|consen 100 HKYAISSAIWYPIDTGMF-T---SSSFDHTLKVWDTNTLQEAVDFKMEG-KVYSHAMSPMAMSHCLIAAG---------- 164 (397)
T ss_pred ceeeeeeeEEeeecCcee-e---cccccceEEEeecccceeeEEeecCc-eeehhhcChhhhcceEEEEe----------
Confidence 356777777777444332 2 23445799999998866332 22333 246678888653 233221
Q ss_pred CCCCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEec
Q 004766 207 DAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEE 263 (732)
Q Consensus 207 ~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~ 263 (732)
.+..+|.+-++.++.-... ..+ +..-+..+.|||...|++...+.
T Consensus 165 --------tr~~~VrLCDi~SGs~sH~--LsG--Hr~~vlaV~Wsp~~e~vLatgsa 209 (397)
T KOG4283|consen 165 --------TRDVQVRLCDIASGSFSHT--LSG--HRDGVLAVEWSPSSEWVLATGSA 209 (397)
T ss_pred --------cCCCcEEEEeccCCcceee--ecc--ccCceEEEEeccCceeEEEecCC
Confidence 2445788888887754432 222 23345789999999999887654
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.05 E-value=1.6 Score=46.74 Aligned_cols=210 Identities=11% Similarity=-0.033 Sum_probs=115.7
Q ss_pred EeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccC
Q 004766 135 IKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDS 214 (732)
Q Consensus 135 ~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~ 214 (732)
.+..++++|+++.... .. ...+.++|.++-..+....-+....+++++||++.+|++....
T Consensus 77 ~~i~v~~~~~~vyv~~-~~---~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~--------------- 137 (381)
T COG3391 77 AGVAVNPAGNKVYVTT-GD---SNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGN--------------- 137 (381)
T ss_pred cceeeCCCCCeEEEec-CC---CCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEeccc---------------
Confidence 4678899998765442 22 2478999977766443222221347899999999888874210
Q ss_pred CcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCCCC
Q 004766 215 NLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLP 294 (732)
Q Consensus 215 ~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~ 294 (732)
....+...+-.+...... +..+. .+ ..++++|+|+.++.... ..+.+.+++.++.... + ...
T Consensus 138 -~~~~vsvid~~t~~~~~~-~~vG~-~P---~~~a~~p~g~~vyv~~~----~~~~v~vi~~~~~~v~--~------~~~ 199 (381)
T COG3391 138 -GNNTVSVIDAATNKVTAT-IPVGN-TP---TGVAVDPDGNKVYVTNS----DDNTVSVIDTSGNSVV--R------GSV 199 (381)
T ss_pred -CCceEEEEeCCCCeEEEE-EecCC-Cc---ceEEECCCCCeEEEEec----CCCeEEEEeCCCccee--c------ccc
Confidence 245677777665432222 22221 22 57899999999876652 2467888886652100 0 000
Q ss_pred cEEeeecccceEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecC-CEEEEEEecCCee
Q 004766 295 FVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNL-NQMIVSYLSDVKY 373 (732)
Q Consensus 295 ~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~-~~l~~~~~~~g~~ 373 (732)
......+.......++++|..+|+.-... ....+..+|..++.......+.... ....+...++ ..+++.... ..
T Consensus 200 ~~~~~~~~~P~~i~v~~~g~~~yV~~~~~-~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~--~~ 275 (381)
T COG3391 200 GSLVGVGTGPAGIAVDPDGNRVYVANDGS-GSNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQ--GG 275 (381)
T ss_pred ccccccCCCCceEEECCCCCEEEEEeccC-CCceEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecC--CC
Confidence 00011111112235889999888654432 2357889998876521111222211 2334555654 445554433 35
Q ss_pred EEEEEeCCCCce
Q 004766 374 VLQIRDLKNGSL 385 (732)
Q Consensus 374 ~l~~~d~~~g~~ 385 (732)
.+.+.|..+...
T Consensus 276 ~V~vid~~~~~v 287 (381)
T COG3391 276 TVSVIDGATDRV 287 (381)
T ss_pred eEEEEeCCCCce
Confidence 788888765544
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.72 Score=49.98 Aligned_cols=193 Identities=11% Similarity=0.018 Sum_probs=107.4
Q ss_pred eEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecccccce-eeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccC
Q 004766 136 KVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWF-KFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDS 214 (732)
Q Consensus 136 ~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~~~~-~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~ 214 (732)
...|=+--++++ .|++..+|+|++..|++.+....... -...++-.|---.++-+++
T Consensus 60 a~kfiaRknWiv-----~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSD----------------- 117 (794)
T KOG0276|consen 60 AAKFIARKNWIV-----TGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSD----------------- 117 (794)
T ss_pred hheeeeccceEE-----EecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCC-----------------
Confidence 344444445555 45677899999999998654221111 1245666665555544332
Q ss_pred CcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCCCC
Q 004766 215 NLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLP 294 (732)
Q Consensus 215 ~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~ 294 (732)
...|.+|+....=. -...|++ +..|++.+++.|...--+.+.+-. .+ +-++.+... .+
T Consensus 118 --Dm~iKlW~we~~wa-~~qtfeG--H~HyVMqv~fnPkD~ntFaS~sLD--rT--VKVWslgs~-------------~~ 175 (794)
T KOG0276|consen 118 --DMTIKLWDWENEWA-CEQTFEG--HEHYVMQVAFNPKDPNTFASASLD--RT--VKVWSLGSP-------------HP 175 (794)
T ss_pred --ccEEEEeeccCcee-eeeEEcC--cceEEEEEEecCCCccceeeeecc--cc--EEEEEcCCC-------------CC
Confidence 23455565543321 2346655 345888999998544433332211 13 444555441 11
Q ss_pred cEEeeecccceEE--EEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecCCEEEEEEecCCe
Q 004766 295 FVKLIDGFDAQYE--VIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVK 372 (732)
Q Consensus 295 ~~~l~~~~~~~~~--~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~~l~~~~~~~g~ 372 (732)
--.+. +....+. .+-+.|++=|+++..+ ...+-.+|-.+..+.++|-.|. ..+..+.+.+.=-++++..+||.
T Consensus 176 nfTl~-gHekGVN~Vdyy~~gdkpylIsgaD--D~tiKvWDyQtk~CV~TLeGHt--~Nvs~v~fhp~lpiiisgsEDGT 250 (794)
T KOG0276|consen 176 NFTLE-GHEKGVNCVDYYTGGDKPYLISGAD--DLTIKVWDYQTKSCVQTLEGHT--NNVSFVFFHPELPIIISGSEDGT 250 (794)
T ss_pred ceeee-ccccCcceEEeccCCCcceEEecCC--CceEEEeecchHHHHHHhhccc--ccceEEEecCCCcEEEEecCCcc
Confidence 22232 2222222 2345577777777643 4457778888877677776665 55666776664458889899964
Q ss_pred eEEEEEe
Q 004766 373 YVLQIRD 379 (732)
Q Consensus 373 ~~l~~~d 379 (732)
+++|.
T Consensus 251 --vriWh 255 (794)
T KOG0276|consen 251 --VRIWN 255 (794)
T ss_pred --EEEec
Confidence 44554
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.35 Score=50.21 Aligned_cols=199 Identities=13% Similarity=0.016 Sum_probs=113.0
Q ss_pred eEEECCCCcEEEEEEeccCCceEEEEEEECCCCce----e-cccc---cceeeeeEEEEeCCcEEEEEEecCCCCCCCCC
Q 004766 136 KVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIV----E-ADAL---SWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMD 207 (732)
Q Consensus 136 ~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~----~-~~~~---~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~ 207 (732)
+++|++.-.--.. +|++..+|.+||+..... + +.+. .......++|.|-...+|-+.
T Consensus 182 glsWn~~~~g~Ll----s~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv----------- 246 (422)
T KOG0264|consen 182 GLSWNRQQEGTLL----SGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSV----------- 246 (422)
T ss_pred ccccccccceeEe----eccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheee-----------
Confidence 4677775543332 234457899999975332 1 1111 111235788998777666553
Q ss_pred CCCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCccccc
Q 004766 208 AGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFK 287 (732)
Q Consensus 208 ~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~ 287 (732)
.....+.+|++-++..+.... ...+..-+..++|.|=+.+|+.+.+. ...|.++|+....
T Consensus 247 -------~dd~~L~iwD~R~~~~~~~~~--~~ah~~~vn~~~fnp~~~~ilAT~S~----D~tV~LwDlRnL~------- 306 (422)
T KOG0264|consen 247 -------GDDGKLMIWDTRSNTSKPSHS--VKAHSAEVNCVAFNPFNEFILATGSA----DKTVALWDLRNLN------- 306 (422)
T ss_pred -------cCCCeEEEEEcCCCCCCCccc--ccccCCceeEEEeCCCCCceEEeccC----CCcEEEeechhcc-------
Confidence 234578889887532111111 11223335678999988888776542 3458899987732
Q ss_pred ccCCCCCcEEeeecccceEE-EEEecCCeEEEEeCCCCCCceEEEEeCCCCC-----------CceEeccCCC-CCceeE
Q 004766 288 KRDGLLPFVKLIDGFDAQYE-VIANDDTVFTFLTNKDAPKYKIIRVDLKEPN-----------DWFEVIPEAE-RDVLES 354 (732)
Q Consensus 288 ~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~-----------~~~~l~~~~~-~~~l~~ 354 (732)
.++-.+....+..+. -|||+.+.++..+.. ..+|.++|+..-. ....|+.|.. ...+.+
T Consensus 307 -----~~lh~~e~H~dev~~V~WSPh~etvLASSg~---D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~D 378 (422)
T KOG0264|consen 307 -----KPLHTFEGHEDEVFQVEWSPHNETVLASSGT---DRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSD 378 (422)
T ss_pred -----cCceeccCCCcceEEEEeCCCCCceeEeccc---CCcEEEEeccccccccChhhhccCCcceeEEecCccccccc
Confidence 123333333333333 399988877765543 4578888875421 1233444432 245778
Q ss_pred EEEecC-CEEEEEEecCCeeEEEE
Q 004766 355 ATAVNL-NQMIVSYLSDVKYVLQI 377 (732)
Q Consensus 355 ~~~~~~-~~l~~~~~~~g~~~l~~ 377 (732)
|.|.+. -.++.+..+++.-+||.
T Consensus 379 fsWnp~ePW~I~SvaeDN~LqIW~ 402 (422)
T KOG0264|consen 379 FSWNPNEPWTIASVAEDNILQIWQ 402 (422)
T ss_pred ccCCCCCCeEEEEecCCceEEEee
Confidence 888874 46777888885444443
|
|
| >KOG2237 consensus Predicted serine protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.013 Score=63.42 Aligned_cols=102 Identities=22% Similarity=0.307 Sum_probs=72.2
Q ss_pred EEEEcCCCCeeEEEEEe-CCCCCceEEeCCCCcCCCCC-EEEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceec
Q 004766 95 YFHNTGLQPQSVLYVQD-SLDAKAKVLLDPNTLSDDGT-AALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEA 172 (732)
Q Consensus 95 ~~~~~~~~~~~~l~~r~-~~~~~~~~l~D~~~l~~~~~-~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~ 172 (732)
|.++...++.. ++.-. ..+...+|+||.|++++++. +..+-.+.|||.++|||.....|.+.+++ |.++....+..
T Consensus 100 ~~rr~~~~e~~-~~ld~~~~~dd~tV~Ld~~~~aed~~Y~~~gls~~spD~~~ia~~~~~~~~e~~~~-v~~~~~~~~~~ 177 (712)
T KOG2237|consen 100 YCRRLLEKEEE-VFLDPNALGDDGTVLLDTNQIAEDFKYFAYGLSESSPDHKYIAYTKDTEGKELFTV-VIDVKFSGPVW 177 (712)
T ss_pred HHHhhhhcccc-eecCCccCCCCceEEechhhhhhcCCceEEeecccCCCceEEEEEEcCCCCcccee-eeeeccCCcee
Confidence 44444433333 44332 22334579999999998865 55555669999999999999999999998 89998877653
Q ss_pred ccccceeeeeEEEEe-CCcEEEEEEecC
Q 004766 173 DALSWFKFSSIAWTH-DSKGFFYSRYPA 199 (732)
Q Consensus 173 ~~~~~~~~~~~~Wsp-Dg~~l~y~~~~~ 199 (732)
.... -.++.++|.. ||..|.|...++
T Consensus 178 ~~~~-~g~~y~~w~~~dg~~l~~~t~~~ 204 (712)
T KOG2237|consen 178 THDG-KGVSYLAWAKQDGEDLLYGTEDE 204 (712)
T ss_pred eccC-CceEeeeecccCCceeeeeeecc
Confidence 3221 1358899988 898888877654
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=95.99 E-value=2.8 Score=44.86 Aligned_cols=128 Identities=13% Similarity=0.168 Sum_probs=66.5
Q ss_pred CCeEEEEeCCCCCCceEEEEeCCCCC-CceEeccCCCCCceeEEEEecCCEEEEEEecCCeeEEEEEeCCCCceeeec-c
Q 004766 313 DTVFTFLTNKDAPKYKIIRVDLKEPN-DWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQL-P 390 (732)
Q Consensus 313 g~~l~~~s~~~~~~~~l~~~d~~~~~-~~~~l~~~~~~~~l~~~~~~~~~~l~~~~~~~g~~~l~~~d~~~g~~~~~l-~ 390 (732)
++.+|+.+. ...|+.+|+++++ .|..-. .....+...+ +++|+.. .+ ..|+.+|..+|+.+-+. .
T Consensus 241 ~~~vy~~~~----~g~l~a~d~~tG~~~W~~~~-----~~~~~p~~~~-~~vyv~~-~~--G~l~~~d~~tG~~~W~~~~ 307 (377)
T TIGR03300 241 GGQVYAVSY----QGRVAALDLRSGRVLWKRDA-----SSYQGPAVDD-NRLYVTD-AD--GVVVALDRRSGSELWKNDE 307 (377)
T ss_pred CCEEEEEEc----CCEEEEEECCCCcEEEeecc-----CCccCceEeC-CEEEEEC-CC--CeEEEEECCCCcEEEcccc
Confidence 567776543 2469999998876 233211 1122334444 6777664 33 47999999888764333 2
Q ss_pred cccceeeEeecccCCcEEEEEEecCCCCceEEEEECCCCCCceEEEEeecCCCCCCCC-ceEEEEEEEccCC
Q 004766 391 IEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTETPEMKIFRETIIPGFDRSE-FHVHQVFVPSKDG 461 (732)
Q Consensus 391 ~~~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~s~dG 461 (732)
+.......+. ..++.+++.- .-..+|.+|..+|+. ...++-. ...+.... +.-+.+.+.+.||
T Consensus 308 ~~~~~~ssp~--i~g~~l~~~~----~~G~l~~~d~~tG~~-~~~~~~~-~~~~~~sp~~~~~~l~v~~~dG 371 (377)
T TIGR03300 308 LKYRQLTAPA--VVGGYLVVGD----FEGYLHWLSREDGSF-VARLKTD-GSGIASPPVVVGDGLLVQTRDG 371 (377)
T ss_pred ccCCccccCE--EECCEEEEEe----CCCEEEEEECCCCCE-EEEEEcC-CCccccCCEEECCEEEEEeCCc
Confidence 2222222221 1345565432 235799999988851 2222210 00122222 2335577777787
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >COG4814 Uncharacterized protein with an alpha/beta hydrolase fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.15 Score=49.16 Aligned_cols=207 Identities=16% Similarity=0.086 Sum_probs=106.6
Q ss_pred CccEEEEEcCCCCccCCCCcChhHHHHHHhcC-----cEEEEEcccCC----CCCchhHHh----cccccCCccH----H
Q 004766 480 SHPCLLYGYGGFNISVTPSFSVSRTILMRHLG-----AVFCIANIRGG----GEYGEEWHK----GGALAKKQNC----F 542 (732)
Q Consensus 480 ~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G-----~~v~~~~~rG~----g~~g~~~~~----~~~~~~~~~~----~ 542 (732)
..|+ ||+||..|... ++.....+++. .+ -.++.++.-|+ |.+...-.. -+... ...+ -
T Consensus 45 ~iPT-IfIhGsgG~as--S~~~Mv~ql~~-~~~~~~e~Lt~~V~~dgslk~tGk~~Kd~~nP~I~~gfe~-n~~s~~~~s 119 (288)
T COG4814 45 AIPT-IFIHGSGGTAS--SLNGMVNQLLP-DYKAGTESLTMTVDVDGSLKVTGKISKDAKNPIIEFGFED-NTASGLDQS 119 (288)
T ss_pred ccce-EEEecCCCChh--HHHHHHHHhhh-cccccccceEEEEcCCCcEEEeeeecccCCCCeEEEEEec-CcCchhhHH
Confidence 4564 67888777643 33333445554 44 56777777765 222211111 11111 1122 2
Q ss_pred HHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhC------CCeeeEEEEcCCcc-cccccccCCCCCccccccC
Q 004766 543 DDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQR------PDLFGCALAHVGVM-DMLRYHKFTIGHAWVSDFG 615 (732)
Q Consensus 543 ~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~------p~~f~a~v~~~p~~-d~~~~~~~~~~~~~~~~~g 615 (732)
.-+..++.+|.++--+ .++-++||||||.-...++..+ |-+=+-+.+..||- ..+.... +... -..-
T Consensus 120 ~wlk~~msyL~~~Y~i--~k~n~VGhSmGg~~~~~Y~~~yg~dks~P~lnK~V~l~gpfN~~~l~~de-~v~~---v~~~ 193 (288)
T COG4814 120 KWLKKAMSYLQKHYNI--PKFNAVGHSMGGLGLTYYMIDYGDDKSLPPLNKLVSLAGPFNVGNLVPDE-TVTD---VLKD 193 (288)
T ss_pred HHHHHHHHHHHHhcCC--ceeeeeeeccccHHHHHHHHHhcCCCCCcchhheEEecccccccccCCCc-chhe---eecc
Confidence 3456788899887433 5899999999999888777754 44444444445543 0111000 0000 0011
Q ss_pred CC--CCHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEeeCC------CCCCCchHHHHHHHHHHHhhcCCCCCCC
Q 004766 616 CS--EEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADH------DDRVVPLHSLKLLATMQYVLCTSLENSP 687 (732)
Q Consensus 616 ~p--~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~------D~~v~~~~~~~~~~~l~~~~~~~~~~~~ 687 (732)
+| .....++++... +..+. ...-+|++.|+- |.+||...++-...-+...
T Consensus 194 ~~~~~~t~y~~y~~~n--~k~v~-----------~~~evl~IaGDl~dg~~tDG~Vp~assls~~~lf~~~--------- 251 (288)
T COG4814 194 GPGLIKTPYYDYIAKN--YKKVS-----------PNTEVLLIAGDLDDGKQTDGAVPWASSLSIYHLFKKN--------- 251 (288)
T ss_pred CccccCcHHHHHHHhc--ceeCC-----------CCcEEEEEecccccCCcCCCceechHhHHHHHHhccC---------
Confidence 11 111223333221 12222 245789999975 5688888888777766654
Q ss_pred CCCCEEEEEeCC--CCCCCCCchHHHHHHHHHHHHHHH
Q 004766 688 QTNPIIGRIERK--AGHGVGLPTQKMIDEAADRYGFMA 723 (732)
Q Consensus 688 ~~~~~~~~~~~~--~gH~~~~~~~~~~~~~~~~~~fl~ 723 (732)
++.+.-.+|++ +-|.-..... .....+..||.
T Consensus 252 -~ksy~e~~~~Gk~a~Hs~lhen~---~v~~yv~~FLw 285 (288)
T COG4814 252 -GKSYIESLYKGKDARHSKLHENP---TVAKYVKNFLW 285 (288)
T ss_pred -cceeEEEeeeCCcchhhccCCCh---hHHHHHHHHhh
Confidence 66665556665 5675433222 33344556664
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.99 E-value=1.3 Score=42.69 Aligned_cols=221 Identities=10% Similarity=0.048 Sum_probs=121.4
Q ss_pred EEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCc-eeccccc-ceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCc
Q 004766 134 LIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQI-VEADALS-WFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTE 211 (732)
Q Consensus 134 ~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~-~~~~~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~ 211 (732)
+-+++||+...-++++..-+| .|+++|+.-.. ++..-.+ ...+.++.|.+-.+..+.++.
T Consensus 63 LfdV~Wse~~e~~~~~a~GDG----SLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsS-------------- 124 (311)
T KOG0277|consen 63 LFDVAWSENHENQVIAASGDG----SLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSS-------------- 124 (311)
T ss_pred eeEeeecCCCcceEEEEecCc----eEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeec--------------
Confidence 457899999999998875444 68899953222 2221111 113478899987777777652
Q ss_pred ccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCC
Q 004766 212 TDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDG 291 (732)
Q Consensus 212 ~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 291 (732)
-...|.+|+..-+++ +.-|.+ +...++...|||--.-++.+.+... .-++|-++..+.
T Consensus 125 ----WD~TiKLW~~~r~~S--v~Tf~g--h~~~Iy~a~~sp~~~nlfas~Sgd~--~l~lwdvr~~gk------------ 182 (311)
T KOG0277|consen 125 ----WDGTIKLWDPNRPNS--VQTFNG--HNSCIYQAAFSPHIPNLFASASGDG--TLRLWDVRSPGK------------ 182 (311)
T ss_pred ----cCCceEeecCCCCcc--eEeecC--CccEEEEEecCCCCCCeEEEccCCc--eEEEEEecCCCc------------
Confidence 223466666554432 233433 3456778999997666655544332 344554444431
Q ss_pred CCCcEEeeecccceEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCC-CceEeccCCCCCceeEEEEecC-CEEEEEEec
Q 004766 292 LLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPN-DWFEVIPEAERDVLESATAVNL-NQMIVSYLS 369 (732)
Q Consensus 292 ~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~-~~~~l~~~~~~~~l~~~~~~~~-~~l~~~~~~ 369 (732)
...-.......-..-|+.....+++... .+..|..+|+..-. ...+|..+. ..+..+.+++. ..++.+.+-
T Consensus 183 --~~~i~ah~~Eil~cdw~ky~~~vl~Tg~---vd~~vr~wDir~~r~pl~eL~gh~--~AVRkvk~Sph~~~lLaSasY 255 (311)
T KOG0277|consen 183 --FMSIEAHNSEILCCDWSKYNHNVLATGG---VDNLVRGWDIRNLRTPLFELNGHG--LAVRKVKFSPHHASLLASASY 255 (311)
T ss_pred --eeEEEeccceeEeecccccCCcEEEecC---CCceEEEEehhhccccceeecCCc--eEEEEEecCcchhhHhhhccc
Confidence 1221111111112237776666665443 24468888887644 234554443 66788888873 346666666
Q ss_pred CCeeEEEEEeCCCCc-eeeecccccceeeEeeccc
Q 004766 370 DVKYVLQIRDLKNGS-LLHQLPIEIGSVNAISARR 403 (732)
Q Consensus 370 ~g~~~l~~~d~~~g~-~~~~l~~~~g~v~~~~~s~ 403 (732)
| ...++||...+. .+++...+...+-++.++.
T Consensus 256 D--mT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~ 288 (311)
T KOG0277|consen 256 D--MTVRIWDPERQDSAIETVDHHTEFVCGLDWSL 288 (311)
T ss_pred c--ceEEecccccchhhhhhhhccceEEecccccc
Confidence 6 466777765332 2233333333333444443
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.3 Score=49.21 Aligned_cols=158 Identities=11% Similarity=0.066 Sum_probs=90.3
Q ss_pred CeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCCCCcEEeeecccceE--EEEEecCCeEEEE
Q 004766 242 PKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQY--EVIANDDTVFTFL 319 (732)
Q Consensus 242 ~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~s~dg~~l~~~ 319 (732)
-+|+..+++.|-..|++-.+.++ .+-++|++++. +..-..+.-... ..+|+. +=|+.
T Consensus 151 lgWVr~vavdP~n~wf~tgs~Dr-----tikIwDlatg~--------------LkltltGhi~~vr~vavS~r--HpYlF 209 (460)
T KOG0285|consen 151 LGWVRSVAVDPGNEWFATGSADR-----TIKIWDLATGQ--------------LKLTLTGHIETVRGVAVSKR--HPYLF 209 (460)
T ss_pred cceEEEEeeCCCceeEEecCCCc-----eeEEEEcccCe--------------EEEeecchhheeeeeeeccc--CceEE
Confidence 46888899999999876554433 36677998864 111111211111 125543 33333
Q ss_pred eCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecCCEEEEEEecCCeeEEEEEeCCCCceeeecccccceeeEe
Q 004766 320 TNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAI 399 (732)
Q Consensus 320 s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~~l~~~~~~~g~~~l~~~d~~~g~~~~~l~~~~g~v~~~ 399 (732)
+.- ...++-.+|++..+-++....+- ..+..+.+.+...++++..+| +.+++||..+...+..+..+...|..+
T Consensus 210 s~g--edk~VKCwDLe~nkvIR~YhGHl--S~V~~L~lhPTldvl~t~grD--st~RvWDiRtr~~V~~l~GH~~~V~~V 283 (460)
T KOG0285|consen 210 SAG--EDKQVKCWDLEYNKVIRHYHGHL--SGVYCLDLHPTLDVLVTGGRD--STIRVWDIRTRASVHVLSGHTNPVASV 283 (460)
T ss_pred Eec--CCCeeEEEechhhhhHHHhcccc--ceeEEEeccccceeEEecCCc--ceEEEeeecccceEEEecCCCCcceeE
Confidence 332 23467788998765233222222 223444555545678888777 678899988665555555555556566
Q ss_pred ecccCCcEEEEEEecCCCCceEEEEECCCCC
Q 004766 400 SARREDSVVFISFTSFLIPGIVYQCNLKTET 430 (732)
Q Consensus 400 ~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~~ 430 (732)
...+-...++ +. ..-.++..+|+..|+
T Consensus 284 ~~~~~dpqvi-t~---S~D~tvrlWDl~agk 310 (460)
T KOG0285|consen 284 MCQPTDPQVI-TG---SHDSTVRLWDLRAGK 310 (460)
T ss_pred EeecCCCceE-Ee---cCCceEEEeeeccCc
Confidence 5555444443 22 233578888888775
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.98 E-value=2.5 Score=44.09 Aligned_cols=155 Identities=8% Similarity=0.075 Sum_probs=89.6
Q ss_pred eEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEE
Q 004766 182 SIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCI 261 (732)
Q Consensus 182 ~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~ 261 (732)
.++|--+-+.|+.+. ....+|.+|++.+++....+-. +..-+..+.|.|..-.+++..
T Consensus 248 ~Ls~n~~~~nVLaSg------------------saD~TV~lWD~~~g~p~~s~~~----~~k~Vq~l~wh~~~p~~LLsG 305 (463)
T KOG0270|consen 248 ALSWNRNFRNVLASG------------------SADKTVKLWDVDTGKPKSSITH----HGKKVQTLEWHPYEPSVLLSG 305 (463)
T ss_pred HHHhccccceeEEec------------------CCCceEEEEEcCCCCcceehhh----cCCceeEEEecCCCceEEEec
Confidence 456766666666652 3456799999998876533221 222345788988777666665
Q ss_pred ecCCcceEEEEEEeCCCCCCCcccccccCCCCCcEEeeecccceEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCC-Cc
Q 004766 262 EENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPN-DW 340 (732)
Q Consensus 262 ~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~-~~ 340 (732)
+. ...+-+.|..... .....|+ ...+.+-..|.|.....+|.+.. ++.|+-+|+.... ..
T Consensus 306 s~----D~~V~l~D~R~~~---------~s~~~wk---~~g~VEkv~w~~~se~~f~~~td---dG~v~~~D~R~~~~~v 366 (463)
T KOG0270|consen 306 SY----DGTVALKDCRDPS---------NSGKEWK---FDGEVEKVAWDPHSENSFFVSTD---DGTVYYFDIRNPGKPV 366 (463)
T ss_pred cc----cceEEeeeccCcc---------ccCceEE---eccceEEEEecCCCceeEEEecC---CceEEeeecCCCCCce
Confidence 32 2346677765311 0112221 11222333588876666665544 3479999988764 33
Q ss_pred eEeccCCCCCceeEEEEecC-CEEEEEEecCCeeEEEEEeCC
Q 004766 341 FEVIPEAERDVLESATAVNL-NQMIVSYLSDVKYVLQIRDLK 381 (732)
Q Consensus 341 ~~l~~~~~~~~l~~~~~~~~-~~l~~~~~~~g~~~l~~~d~~ 381 (732)
-.+-.|. ..|.++.+... -.++.+...+. .+.+|++.
T Consensus 367 wt~~AHd--~~ISgl~~n~~~p~~l~t~s~d~--~Vklw~~~ 404 (463)
T KOG0270|consen 367 WTLKAHD--DEISGLSVNIQTPGLLSTASTDK--VVKLWKFD 404 (463)
T ss_pred eEEEecc--CCcceEEecCCCCcceeeccccc--eEEEEeec
Confidence 4455665 56888888753 34666655554 45555554
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.053 Score=54.48 Aligned_cols=159 Identities=12% Similarity=0.160 Sum_probs=92.5
Q ss_pred EEEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCc
Q 004766 132 AALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTE 211 (732)
Q Consensus 132 ~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~ 211 (732)
-++..++++|-..-|+-+. |++ ..|.++|+.++.++...+-..+-..++|+|. .+-|+..
T Consensus 188 Dti~svkfNpvETsILas~---~sD-rsIvLyD~R~~~Pl~KVi~~mRTN~IswnPe--afnF~~a-------------- 247 (433)
T KOG0268|consen 188 DSISSVKFNPVETSILASC---ASD-RSIVLYDLRQASPLKKVILTMRTNTICWNPE--AFNFVAA-------------- 247 (433)
T ss_pred CceeEEecCCCcchheeee---ccC-CceEEEecccCCccceeeeeccccceecCcc--ccceeec--------------
Confidence 3567788888877665443 333 5799999999998765444444578999993 3555542
Q ss_pred ccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCC
Q 004766 212 TDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDG 291 (732)
Q Consensus 212 ~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 291 (732)
...+.+|.+++-.- .+.+-++. ++..-.+++.+||-|+-++-.+.+.+ |.++....+... +.+
T Consensus 248 ---~ED~nlY~~DmR~l-~~p~~v~~--dhvsAV~dVdfsptG~EfvsgsyDks-----IRIf~~~~~~SR-diY----- 310 (433)
T KOG0268|consen 248 ---NEDHNLYTYDMRNL-SRPLNVHK--DHVSAVMDVDFSPTGQEFVSGSYDKS-----IRIFPVNHGHSR-DIY----- 310 (433)
T ss_pred ---cccccceehhhhhh-cccchhhc--ccceeEEEeccCCCcchhccccccce-----EEEeecCCCcch-hhh-----
Confidence 34567888886532 12233443 23345678999999999876554332 555555443210 000
Q ss_pred CCCcEEeeecccceEE-EEEecCCeEEEEeCCCCCCceEEEEeCC
Q 004766 292 LLPFVKLIDGFDAQYE-VIANDDTVFTFLTNKDAPKYKIIRVDLK 335 (732)
Q Consensus 292 ~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~ 335 (732)
-+..-+..+. .||.|.+.++ +..+..+.+||.....
T Consensus 311 ------htkRMq~V~~Vk~S~Dskyi~--SGSdd~nvRlWka~As 347 (433)
T KOG0268|consen 311 ------HTKRMQHVFCVKYSMDSKYII--SGSDDGNVRLWKAKAS 347 (433)
T ss_pred ------hHhhhheeeEEEEeccccEEE--ecCCCcceeeeecchh
Confidence 0111111222 3888876443 4444457788887653
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.22 Score=52.76 Aligned_cols=164 Identities=12% Similarity=0.130 Sum_probs=91.6
Q ss_pred eeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEE
Q 004766 181 SSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMC 260 (732)
Q Consensus 181 ~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~ 260 (732)
..-.|+|||..|+-+. ....|..|....-... ++.+. ..-+..++|.|+...++|+
T Consensus 108 ~~gRW~~dGtgLlt~G-------------------EDG~iKiWSrsGMLRS--tl~Q~---~~~v~c~~W~p~S~~vl~c 163 (737)
T KOG1524|consen 108 SSGRWSPDGAGLLTAG-------------------EDGVIKIWSRSGMLRS--TVVQN---EESIRCARWAPNSNSIVFC 163 (737)
T ss_pred hhcccCCCCceeeeec-------------------CCceEEEEeccchHHH--HHhhc---CceeEEEEECCCCCceEEe
Confidence 5678999999998753 3335666665332111 11111 1134578999999999998
Q ss_pred EecCCcceEEEEEEeCCCCCCCcccccccCCCCCcEEeeecccceEE--EEEecCCeEEEEeCCCCCCceEEEEeCCCCC
Q 004766 261 IEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYE--VIANDDTVFTFLTNKDAPKYKIIRVDLKEPN 338 (732)
Q Consensus 261 ~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~ 338 (732)
.. ..+++-+++-.. + ..+... .+.-+. .|++..+.++ + ++..++.-.+|..+..
T Consensus 164 ~g------~h~~IKpL~~n~------------k-~i~WkA-HDGiiL~~~W~~~s~lI~--s--gGED~kfKvWD~~G~~ 219 (737)
T KOG1524|consen 164 QG------GHISIKPLAANS------------K-IIRWRA-HDGLVLSLSWSTQSNIIA--S--GGEDFRFKIWDAQGAN 219 (737)
T ss_pred cC------CeEEEeeccccc------------c-eeEEec-cCcEEEEeecCcccccee--e--cCCceeEEeecccCcc
Confidence 64 346676665410 1 111111 122221 3776554333 2 2445666666754432
Q ss_pred CceEec-cCCCCCceeEEEEecCCEEEEEEecCCeeEEEEEeCCCCceeeecccc-cceeeEeecccCCcEEEEEE
Q 004766 339 DWFEVI-PEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIE-IGSVNAISARREDSVVFISF 412 (732)
Q Consensus 339 ~~~~l~-~~~~~~~l~~~~~~~~~~l~~~~~~~g~~~l~~~d~~~g~~~~~l~~~-~g~v~~~~~s~d~~~l~~~~ 412 (732)
|+ ....+..|.+++|.+ +.+|+..+-+ .++ +..| .|++..+++|+||..+....
T Consensus 220 ----Lf~S~~~ey~ITSva~np-d~~~~v~S~n---t~R------------~~~p~~GSifnlsWS~DGTQ~a~gt 275 (737)
T KOG1524|consen 220 ----LFTSAAEEYAITSVAFNP-EKDYLLWSYN---TAR------------FSSPRVGSIFNLSWSADGTQATCGT 275 (737)
T ss_pred ----cccCChhccceeeeeecc-ccceeeeeee---eee------------ecCCCccceEEEEEcCCCceeeccc
Confidence 22 222357899999998 4666655433 111 2333 57777888888887765543
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.42 Score=46.92 Aligned_cols=135 Identities=14% Similarity=0.101 Sum_probs=74.9
Q ss_pred EeCCCCcCCCCC----EEEEeEEECCCCc-EEEEEEeccCCceEEEEEEECCCCceec-ccccceeeeeEEEEeCCcEEE
Q 004766 120 LLDPNTLSDDGT----AALIKVSVSEDAK-YLAYALSYSGSDWATIKLMRIEDQIVEA-DALSWFKFSSIAWTHDSKGFF 193 (732)
Q Consensus 120 l~D~~~l~~~~~----~~~~~~~~SPDG~-~la~~~~~~G~e~~~i~v~dl~~g~~~~-~~~~~~~~~~~~WspDg~~l~ 193 (732)
+.|.|++..-.. -.+..-.+||=.. +.+++. |.+..+|++.|+++|...- .......+-.+.|||-..+++
T Consensus 128 VWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~---gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vL 204 (397)
T KOG4283|consen 128 VWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAA---GTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVL 204 (397)
T ss_pred EeecccceeeEEeecCceeehhhcChhhhcceEEEE---ecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEE
Confidence 446666643211 2345566888443 333333 3334689999999998421 111222346899999999999
Q ss_pred EEEecCCCCCCCCCCCCcccCCcccEEEEEECCCC----------CCCCeEEEe-cCCCCeeEEEeEEecCCcEEEEEEe
Q 004766 194 YSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTK----------QSEDILCWK-DPEHPKYIFSGHVTEDGQYLVMCIE 262 (732)
Q Consensus 194 y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~----------~~~~~~v~~-~~~~~~~~~~~~~SpDg~~l~~~~~ 262 (732)
++..- ...+.+|++... +.....+.+ .+.+.+-+.+++|+.||++++....
T Consensus 205 atgsa------------------Dg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gt 266 (397)
T KOG4283|consen 205 ATGSA------------------DGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGT 266 (397)
T ss_pred EecCC------------------CceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccC
Confidence 98431 123444444211 000011111 2222334568999999999986642
Q ss_pred cCCcceEEEEEEeCCCCC
Q 004766 263 ENCDPVNKVYYCDLSALP 280 (732)
Q Consensus 263 ~~~~~~~~l~~~d~~~~~ 280 (732)
.+++.+++...|.
T Consensus 267 -----d~r~r~wn~~~G~ 279 (397)
T KOG4283|consen 267 -----DDRIRVWNMESGR 279 (397)
T ss_pred -----ccceEEeecccCc
Confidence 3456667766654
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.84 E-value=3.1 Score=44.05 Aligned_cols=242 Identities=8% Similarity=0.014 Sum_probs=120.0
Q ss_pred EEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCce-ecccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcc
Q 004766 134 LIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIV-EADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTET 212 (732)
Q Consensus 134 ~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~-~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~ 212 (732)
+..+.|+.... +.+.+.+|.....|+..|=.++++ +....++. ...+-+-.+..+|.++
T Consensus 37 ~~s~~w~~~n~--lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd--~~~Cv~~~s~S~y~~s---------------- 96 (673)
T KOG4378|consen 37 DFSFNWQRRNF--LVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGD--NAFCVACASQSLYEIS---------------- 96 (673)
T ss_pred ceeeeccccce--EEEeecCCceeEEEecccCCCCccceeeccccc--hHHHHhhhhcceeeec----------------
Confidence 55677776554 334445666555555555444542 11111111 1112222222344443
Q ss_pred cCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCC
Q 004766 213 DSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGL 292 (732)
Q Consensus 213 ~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~ 292 (732)
.+....|..|++...... .. ..++...+..+.+.-...||+-.+.. .+|.+..+.++.
T Consensus 97 -gG~~~~Vkiwdl~~kl~h-r~---lkdh~stvt~v~YN~~DeyiAsvs~g-----Gdiiih~~~t~~------------ 154 (673)
T KOG4378|consen 97 -GGQSGCVKIWDLRAKLIH-RF---LKDHQSTVTYVDYNNTDEYIASVSDG-----GDIIIHGTKTKQ------------ 154 (673)
T ss_pred -cCcCceeeehhhHHHHHh-hh---ccCCcceeEEEEecCCcceeEEeccC-----CcEEEEecccCc------------
Confidence 234456777777532111 01 11222233344444456666655432 346666666532
Q ss_pred CCcEEeeecccce--EEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCc-eEeccCCCCCceeEEEEecC-CEEEEEEe
Q 004766 293 LPFVKLIDGFDAQ--YEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDW-FEVIPEAERDVLESATAVNL-NQMIVSYL 368 (732)
Q Consensus 293 ~~~~~l~~~~~~~--~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~-~~l~~~~~~~~l~~~~~~~~-~~l~~~~~ 368 (732)
....+..+.... ...+++..+.++..... ++.+-++|+.+.... .-.-.|. ....++.+++. ..|+++..
T Consensus 155 -~tt~f~~~sgqsvRll~ys~skr~lL~~asd---~G~VtlwDv~g~sp~~~~~~~Hs--AP~~gicfspsne~l~vsVG 228 (673)
T KOG4378|consen 155 -KTTTFTIDSGQSVRLLRYSPSKRFLLSIASD---KGAVTLWDVQGMSPIFHASEAHS--APCRGICFSPSNEALLVSVG 228 (673)
T ss_pred -cccceecCCCCeEEEeecccccceeeEeecc---CCeEEEEeccCCCcccchhhhcc--CCcCcceecCCccceEEEec
Confidence 112222221211 22366755555544433 446778888765411 1111222 45567787763 56777766
Q ss_pred cCCeeEEEEEeCCCCceeeecccccceeeEeecccCCcEEEEEEecCCCCceEEEEECCCCC
Q 004766 369 SDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 430 (732)
Q Consensus 369 ~~g~~~l~~~d~~~g~~~~~l~~~~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~~ 430 (732)
-| -+|++||..+.+....|+.. ...+.+++.++|-+|... +.-+++|.||+...+
T Consensus 229 ~D--kki~~yD~~s~~s~~~l~y~-~Plstvaf~~~G~~L~aG----~s~G~~i~YD~R~~k 283 (673)
T KOG4378|consen 229 YD--KKINIYDIRSQASTDRLTYS-HPLSTVAFSECGTYLCAG----NSKGELIAYDMRSTK 283 (673)
T ss_pred cc--ceEEEeecccccccceeeec-CCcceeeecCCceEEEee----cCCceEEEEecccCC
Confidence 66 58999997643333444432 234456777888655433 335789999997654
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.11 Score=51.82 Aligned_cols=219 Identities=15% Similarity=0.121 Sum_probs=112.0
Q ss_pred cCCceEEEEEEECCCCceecccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCCcccEEEEEECCCCCCCC
Q 004766 153 SGSDWATIKLMRIEDQIVEADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSED 232 (732)
Q Consensus 153 ~G~e~~~i~v~dl~~g~~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~ 232 (732)
+|....+|.|||..+-+.+..-.+... +-+..--|.+-|+-.+ -...|..|+..++..-.
T Consensus 212 SGlrDnTikiWD~n~~~c~~~L~GHtG-SVLCLqyd~rviisGS-------------------SDsTvrvWDv~tge~l~ 271 (499)
T KOG0281|consen 212 SGLRDNTIKIWDKNSLECLKILTGHTG-SVLCLQYDERVIVSGS-------------------SDSTVRVWDVNTGEPLN 271 (499)
T ss_pred cccccCceEEeccccHHHHHhhhcCCC-cEEeeeccceEEEecC-------------------CCceEEEEeccCCchhh
Confidence 366667999999887664432222211 3334444665333222 23468899998876443
Q ss_pred eEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCCCCcEEeeecccceEEEEEec
Q 004766 233 ILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIAND 312 (732)
Q Consensus 233 ~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~d 312 (732)
+++ ...+ .+..+.++ ..+++-.+.+. .+-++|+.... ....+.+..+..+.+..+.-|
T Consensus 272 tli-hHce---aVLhlrf~--ng~mvtcSkDr-----siaVWdm~sps-----------~it~rrVLvGHrAaVNvVdfd 329 (499)
T KOG0281|consen 272 TLI-HHCE---AVLHLRFS--NGYMVTCSKDR-----SIAVWDMASPT-----------DITLRRVLVGHRAAVNVVDFD 329 (499)
T ss_pred HHh-hhcc---eeEEEEEe--CCEEEEecCCc-----eeEEEeccCch-----------HHHHHHHHhhhhhheeeeccc
Confidence 322 2222 23455554 34444443332 24555655421 111222222333333333334
Q ss_pred CCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecCCEEEEEEecCCeeEEEEEeCCCCceeeecccc
Q 004766 313 DTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIE 392 (732)
Q Consensus 313 g~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~~l~~~~~~~g~~~l~~~d~~~g~~~~~l~~~ 392 (732)
.+ |+++..+ .-.|-.++..+....+.|-.+. .-|..... . ++++++.+.+ ..|.+||...|+.++.|..+
T Consensus 330 ~k--yIVsASg--DRTikvW~~st~efvRtl~gHk--RGIAClQY-r-~rlvVSGSSD--ntIRlwdi~~G~cLRvLeGH 399 (499)
T KOG0281|consen 330 DK--YIVSASG--DRTIKVWSTSTCEFVRTLNGHK--RGIACLQY-R-DRLVVSGSSD--NTIRLWDIECGACLRVLEGH 399 (499)
T ss_pred cc--eEEEecC--CceEEEEeccceeeehhhhccc--ccceehhc-c-CeEEEecCCC--ceEEEEeccccHHHHHHhch
Confidence 44 4444432 2357777887876455555554 22322221 3 7899988877 58999999999887777654
Q ss_pred cceeeEeecccCCcEEEEEEecCCCCceEEEEECCCC
Q 004766 393 IGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTE 429 (732)
Q Consensus 393 ~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~ 429 (732)
..-|..+. +|.+.++ |-.--+.+-.+|+.++
T Consensus 400 EeLvRciR--Fd~krIV----SGaYDGkikvWdl~aa 430 (499)
T KOG0281|consen 400 EELVRCIR--FDNKRIV----SGAYDGKIKVWDLQAA 430 (499)
T ss_pred HHhhhhee--ecCceee----eccccceEEEEecccc
Confidence 33333222 2344332 2222345555665544
|
|
| >PF07519 Tannase: Tannase and feruloyl esterase; InterPro: IPR011118 This family includes fungal tannase [] and feruloyl esterase [, ] | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.053 Score=59.48 Aligned_cols=129 Identities=19% Similarity=0.176 Sum_probs=86.6
Q ss_pred eEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcCh-hHHHHHHhcCcEEEEEcccCCCCC----chhHH--hccccc
Q 004766 464 KIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSV-SRTILMRHLGAVFCIANIRGGGEY----GEEWH--KGGALA 536 (732)
Q Consensus 464 ~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~-~~~~~l~~~G~~v~~~~~rG~g~~----g~~~~--~~~~~~ 536 (732)
.|...+..|.+. ++ -.+..+-||+.......-.. ....-++ +||+++.-|- |+.+. ...|. .....+
T Consensus 16 ~i~fev~LP~~W--Ng--R~~~~GgGG~~G~i~~~~~~~~~~~~~~-~G~A~~~TD~-Gh~~~~~~~~~~~~~n~~~~~d 89 (474)
T PF07519_consen 16 NIRFEVWLPDNW--NG--RFLQVGGGGFAGGINYADGKASMATALA-RGYATASTDS-GHQGSAGSDDASFGNNPEALLD 89 (474)
T ss_pred eEEEEEECChhh--cc--CeEEECCCeeeCcccccccccccchhhh-cCeEEEEecC-CCCCCcccccccccCCHHHHHH
Confidence 777777888754 23 35666666665433322210 1234466 9999999885 22221 11221 111233
Q ss_pred CCccHHHHHHHHHHHHHHcCC-CCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCcccc
Q 004766 537 KKQNCFDDFISASEYLISAGY-TQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDM 598 (732)
Q Consensus 537 ~~~~~~~D~~~~~~~l~~~~~-~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~ 598 (732)
+....+.+...+.+.|++.-| ..|++-...|.|.||--.+.++.++|+.|.++|+.+|..++
T Consensus 90 fa~ra~h~~~~~aK~l~~~~Yg~~p~~sY~~GcS~GGRqgl~~AQryP~dfDGIlAgaPA~~~ 152 (474)
T PF07519_consen 90 FAYRALHETTVVAKALIEAFYGKAPKYSYFSGCSTGGRQGLMAAQRYPEDFDGILAGAPAINW 152 (474)
T ss_pred HHhhHHHHHHHHHHHHHHHHhCCCCCceEEEEeCCCcchHHHHHHhChhhcCeEEeCCchHHH
Confidence 444556777778888888755 36799999999999999999999999999999999997765
|
It also includes several bacterial homologues of unknown function. |
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=95.77 E-value=6.5 Score=47.21 Aligned_cols=119 Identities=9% Similarity=0.094 Sum_probs=67.3
Q ss_pred EEEeEEecCCcEEEEEEecCCcc-eEEEEEEeCCCCCCCcccccccCCCCCcEEeeecccceEEEEEecCCeEEEEeCCC
Q 004766 245 IFSGHVTEDGQYLVMCIEENCDP-VNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKD 323 (732)
Q Consensus 245 ~~~~~~SpDg~~l~~~~~~~~~~-~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~ 323 (732)
...++|-.||+|.++..-..... ...+.+++-++ . +.. ...-+.+... ...|.|.|..|+-... .
T Consensus 212 ~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~ReG-~--L~s---------tSE~v~gLe~-~l~WrPsG~lIA~~q~-~ 277 (928)
T PF04762_consen 212 RVRISWRGDGEYFAVSSVEPETGSRRVIRVYSREG-E--LQS---------TSEPVDGLEG-ALSWRPSGNLIASSQR-L 277 (928)
T ss_pred ceEEEECCCCcEEEEEEEEcCCCceeEEEEECCCc-e--EEe---------ccccCCCccC-CccCCCCCCEEEEEEE-c
Confidence 35789999999999887633322 45677777664 1 100 0001112211 2259999987775543 3
Q ss_pred CCCceEEEEeCCCCC--CceEeccCCCCCceeEEEEecCCEEEEEEecCCeeEEEEEeCC
Q 004766 324 APKYKIIRVDLKEPN--DWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLK 381 (732)
Q Consensus 324 ~~~~~l~~~d~~~~~--~~~~l~~~~~~~~l~~~~~~~~~~l~~~~~~~g~~~l~~~d~~ 381 (732)
..+..|..+.-++-. .+..-. ...+..+..+.|..++.+++....+. |.+|...
T Consensus 278 ~~~~~VvFfErNGLrhgeF~l~~-~~~~~~v~~l~Wn~ds~iLAv~~~~~---vqLWt~~ 333 (928)
T PF04762_consen 278 PDRHDVVFFERNGLRHGEFTLRF-DPEEEKVIELAWNSDSEILAVWLEDR---VQLWTRS 333 (928)
T ss_pred CCCcEEEEEecCCcEeeeEecCC-CCCCceeeEEEECCCCCEEEEEecCC---ceEEEee
Confidence 345677777655433 122111 12246678899998766666666553 5666543
|
|
| >KOG2182 consensus Hydrolytic enzymes of the alpha/beta hydrolase fold [Posttranslational modification, protein turnover, chaperones; General function prediction only] | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.06 Score=57.07 Aligned_cols=118 Identities=16% Similarity=0.083 Sum_probs=79.7
Q ss_pred CCccEEEEEcCCCCccCCCCc--ChhHHHHHHhcCcEEEEEcccCCCCC---chhHHhcccccCCccHHHHHHHHHHHHH
Q 004766 479 GSHPCLLYGYGGFNISVTPSF--SVSRTILMRHLGAVFCIANIRGGGEY---GEEWHKGGALAKKQNCFDDFISASEYLI 553 (732)
Q Consensus 479 ~~~P~vv~~hG~~~~~~~~~~--~~~~~~~l~~~G~~v~~~~~rG~g~~---g~~~~~~~~~~~~~~~~~D~~~~~~~l~ 553 (732)
...|+.|++-|-......|.- ...+..|..+.|..|+...+|=-|.. +.--....+...-...+.|+...|+.+-
T Consensus 84 ~~gPiFLmIGGEgp~~~~wv~~~~~~~~~~AkkfgA~v~~lEHRFYG~S~P~~~~st~nlk~LSs~QALaDla~fI~~~n 163 (514)
T KOG2182|consen 84 PGGPIFLMIGGEGPESDKWVGNENLTWLQWAKKFGATVFQLEHRFYGQSSPIGDLSTSNLKYLSSLQALADLAEFIKAMN 163 (514)
T ss_pred CCCceEEEEcCCCCCCCCccccCcchHHHHHHHhCCeeEEeeeeccccCCCCCCCcccchhhhhHHHHHHHHHHHHHHHH
Confidence 456888888664322222211 22467888889999999999963321 1100111112222345788888888876
Q ss_pred Hc-CCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCcc
Q 004766 554 SA-GYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVM 596 (732)
Q Consensus 554 ~~-~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~ 596 (732)
.+ +..++.+...+|+|+-|.|++|.=..+|++..++|+.++.+
T Consensus 164 ~k~n~~~~~~WitFGgSYsGsLsAW~R~~yPel~~GsvASSapv 207 (514)
T KOG2182|consen 164 AKFNFSDDSKWITFGGSYSGSLSAWFREKYPELTVGSVASSAPV 207 (514)
T ss_pred hhcCCCCCCCeEEECCCchhHHHHHHHHhCchhheeecccccce
Confidence 55 56677799999999999999999999999988888766543
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.33 Score=53.77 Aligned_cols=198 Identities=10% Similarity=-0.032 Sum_probs=113.1
Q ss_pred CCEEEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecccccce-eeeeEEEEeCCcEEEEEEecCCCCCCCCCC
Q 004766 130 GTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWF-KFSSIAWTHDSKGFFYSRYPAPKEGKDMDA 208 (732)
Q Consensus 130 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~~~~-~~~~~~WspDg~~l~y~~~~~~~~~~~~~~ 208 (732)
+..++..+.|++-.-.|+.+- +....|..||+....-......+. ....+.|||--...|++..+.
T Consensus 132 H~Rs~~~ldfh~tep~iliSG----SQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~ds--------- 198 (839)
T KOG0269|consen 132 HERSANKLDFHSTEPNILISG----SQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDS--------- 198 (839)
T ss_pred hccceeeeeeccCCccEEEec----CCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCC---------
Confidence 456788899999888888774 344689999998665332222221 236789999654444443332
Q ss_pred CCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccc
Q 004766 209 GTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKK 288 (732)
Q Consensus 209 ~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~ 288 (732)
..|.+||+-.+. ...+....+.+...-+.|+|++.||+-...+ ..+.+|+..+...
T Consensus 199 ---------G~lqlWDlRqp~---r~~~k~~AH~GpV~c~nwhPnr~~lATGGRD-----K~vkiWd~t~~~~------- 254 (839)
T KOG0269|consen 199 ---------GYLQLWDLRQPD---RCEKKLTAHNGPVLCLNWHPNREWLATGGRD-----KMVKIWDMTDSRA------- 254 (839)
T ss_pred ---------ceEEEeeccCch---hHHHHhhcccCceEEEeecCCCceeeecCCC-----ccEEEEeccCCCc-------
Confidence 247788886542 1222223344566778999999999865422 3356667665321
Q ss_pred cCCCCCcEEeeecccceEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCC-CceEeccCCCCCceeEEEEecC-CEEEEE
Q 004766 289 RDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPN-DWFEVIPEAERDVLESATAVNL-NQMIVS 366 (732)
Q Consensus 289 ~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~-~~~~l~~~~~~~~l~~~~~~~~-~~l~~~ 366 (732)
.+...+-......-..|.|+-...+-.+.- .....|.++|+..+= ....+..|. ..+.++.|..+ ..++..
T Consensus 255 ----~~~~tInTiapv~rVkWRP~~~~hLAtcsm-v~dtsV~VWDvrRPYIP~~t~~eH~--~~vt~i~W~~~d~~~l~s 327 (839)
T KOG0269|consen 255 ----KPKHTINTIAPVGRVKWRPARSYHLATCSM-VVDTSVHVWDVRRPYIPYATFLEHT--DSVTGIAWDSGDRINLWS 327 (839)
T ss_pred ----cceeEEeecceeeeeeeccCccchhhhhhc-cccceEEEEeeccccccceeeeccC--ccccceeccCCCceeeEe
Confidence 111111111111112477865533322222 235678999987653 233444444 56788888753 345666
Q ss_pred EecCC
Q 004766 367 YLSDV 371 (732)
Q Consensus 367 ~~~~g 371 (732)
...++
T Consensus 328 ~sKD~ 332 (839)
T KOG0269|consen 328 CSKDG 332 (839)
T ss_pred ecCcc
Confidence 66664
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.18 Score=53.46 Aligned_cols=54 Identities=11% Similarity=0.186 Sum_probs=33.1
Q ss_pred EEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCCCCcEEeeecccceE--EEEEecCCeEEE
Q 004766 246 FSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQY--EVIANDDTVFTF 318 (732)
Q Consensus 246 ~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~s~dg~~l~~ 318 (732)
..+++||||++|+.++.++. |.+.+..+.+ +..+...+-... ..|||||+.|+.
T Consensus 294 n~f~FS~DG~~LA~VSqDGf-----LRvF~fdt~e--------------Llg~mkSYFGGLLCvcWSPDGKyIvt 349 (636)
T KOG2394|consen 294 NEFAFSPDGKYLATVSQDGF-----LRIFDFDTQE--------------LLGVMKSYFGGLLCVCWSPDGKYIVT 349 (636)
T ss_pred cceeEcCCCceEEEEecCce-----EEEeeccHHH--------------HHHHHHhhccceEEEEEcCCccEEEe
Confidence 36789999999999987654 5555544411 222222222222 259999987664
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.67 E-value=1 Score=48.36 Aligned_cols=95 Identities=14% Similarity=0.126 Sum_probs=54.0
Q ss_pred EEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecC--CEEEEEEecCCeeEEEEEeCCCCcee
Q 004766 309 IANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNL--NQMIVSYLSDVKYVLQIRDLKNGSLL 386 (732)
Q Consensus 309 ~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~--~~l~~~~~~~g~~~l~~~d~~~g~~~ 386 (732)
|+.||=++.+-+. .+.++.+|+.+..+ -.+-.+.....|..+.|.+. ...+++... ..+.+||..+|+..
T Consensus 236 F~d~gL~~aVGts----~G~v~iyDLRa~~p-l~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk---~~~kiWd~~~Gk~~ 307 (703)
T KOG2321|consen 236 FRDDGLHVAVGTS----TGSVLIYDLRASKP-LLVKDHGYELPIKKLDWQDTDQQNKVVSMDK---RILKIWDECTGKPM 307 (703)
T ss_pred ecCCceeEEeecc----CCcEEEEEcccCCc-eeecccCCccceeeecccccCCCceEEecch---HHhhhcccccCCce
Confidence 5555656665333 45799999988762 22223443455666666542 334444433 35788998889875
Q ss_pred eecccccceeeEeecccCCcEEEEEE
Q 004766 387 HQLPIEIGSVNAISARREDSVVFISF 412 (732)
Q Consensus 387 ~~l~~~~g~v~~~~~s~d~~~l~~~~ 412 (732)
..+. |...+..+..-+++..+++..
T Consensus 308 asiE-pt~~lND~C~~p~sGm~f~An 332 (703)
T KOG2321|consen 308 ASIE-PTSDLNDFCFVPGSGMFFTAN 332 (703)
T ss_pred eecc-ccCCcCceeeecCCceEEEec
Confidence 5554 222344455556666554443
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.11 Score=52.62 Aligned_cols=127 Identities=16% Similarity=0.108 Sum_probs=77.2
Q ss_pred CCCCcCCCCCEEEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCce---ecccccceeeeeEEEEeCCcEEEEEEec
Q 004766 122 DPNTLSDDGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIV---EADALSWFKFSSIAWTHDSKGFFYSRYP 198 (732)
Q Consensus 122 D~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~---~~~~~~~~~~~~~~WspDg~~l~y~~~~ 198 (732)
|.+-++ ++..++..++|||..+-+.++.+.+| .|+|||+..+.. +.....+.++.-++|+-+-..|++..++
T Consensus 249 d~~Pf~-gH~~SVEDLqWSptE~~vfaScS~Dg----sIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~Dd 323 (440)
T KOG0302|consen 249 DQRPFT-GHTKSVEDLQWSPTEDGVFASCSCDG----SIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDD 323 (440)
T ss_pred cCcccc-ccccchhhhccCCccCceEEeeecCc----eEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCC
Confidence 444443 35678889999999999988887665 699999998842 2112223345778999777645543222
Q ss_pred CCCCCCCCCCCCcccCCcccEEEEEECCCCCCC-CeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCC
Q 004766 199 APKEGKDMDAGTETDSNLYHEFYYHFLGTKQSE-DILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLS 277 (732)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~-~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~ 277 (732)
+ .+.+|+|.+-+.. .+..|. .+..-+.++.|+|....++..+.. .++|.++|++
T Consensus 324 G-------------------t~~iwDLR~~~~~~pVA~fk--~Hk~pItsieW~p~e~s~iaasg~----D~QitiWDls 378 (440)
T KOG0302|consen 324 G-------------------TLSIWDLRQFKSGQPVATFK--YHKAPITSIEWHPHEDSVIAASGE----DNQITIWDLS 378 (440)
T ss_pred c-------------------eEEEEEhhhccCCCcceeEE--eccCCeeEEEeccccCceEEeccC----CCcEEEEEee
Confidence 2 3555555432222 122232 223346789999987776555432 2456677765
Q ss_pred C
Q 004766 278 A 278 (732)
Q Consensus 278 ~ 278 (732)
.
T Consensus 379 v 379 (440)
T KOG0302|consen 379 V 379 (440)
T ss_pred c
Confidence 4
|
|
| >PF08386 Abhydrolase_4: TAP-like protein; InterPro: IPR013595 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.019 Score=48.57 Aligned_cols=59 Identities=19% Similarity=0.072 Sum_probs=44.6
Q ss_pred CCeEEEEeeCCCCCCCchHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeCCCCCCCCCchHHHHHHHHHHHHHHH
Q 004766 649 YPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMA 723 (732)
Q Consensus 649 ~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~ 723 (732)
.+|+|++.+..|+.+|+..+.++.++|.. ..+++..+.||+.....+. -....+.+||.
T Consensus 34 ~~piL~l~~~~Dp~TP~~~a~~~~~~l~~--------------s~lvt~~g~gHg~~~~~s~--C~~~~v~~yl~ 92 (103)
T PF08386_consen 34 APPILVLGGTHDPVTPYEGARAMAARLPG--------------SRLVTVDGAGHGVYAGGSP--CVDKAVDDYLL 92 (103)
T ss_pred CCCEEEEecCcCCCCcHHHHHHHHHHCCC--------------ceEEEEeccCcceecCCCh--HHHHHHHHHHH
Confidence 58999999999999999999999988763 3778888999997632222 22334556765
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents a C-terminal domain associated with putative hydrolases and bacterial peptidases that belong to MEROPS peptidase family S33 (clan SC). They are related to a tripeptidyl aminopeptidase from Streptomyces lividans (Q54410 from SWISSPROT). A member of this family (Q6E3K7 from SWISSPROT) is thought to be involved in the C-terminal processing of propionicin F, a bacteriocidin characterised from Propionibacterium freudenreichii []. ; GO: 0008233 peptidase activity |
| >PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.054 Score=53.50 Aligned_cols=96 Identities=15% Similarity=0.099 Sum_probs=57.3
Q ss_pred CCccEEEEEcCCCCccCCCCcChhHHHHHHhcCc--EEEEEcccCCCCCchhHHhcccccCCccHHHHHHHHHHHHHHcC
Q 004766 479 GSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGA--VFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAG 556 (732)
Q Consensus 479 ~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~--~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~ 556 (732)
....++||+||.-.. ...... ...++....|+ .++.+..+..|..- .|..+ +..-..+-.++...++.|.+.
T Consensus 16 ~~~~vlvfVHGyn~~-f~~a~~-r~aql~~~~~~~~~~i~FsWPS~g~~~-~Y~~d--~~~a~~s~~~l~~~L~~L~~~- 89 (233)
T PF05990_consen 16 PDKEVLVFVHGYNNS-FEDALR-RAAQLAHDLGFPGVVILFSWPSDGSLL-GYFYD--RESARFSGPALARFLRDLARA- 89 (233)
T ss_pred CCCeEEEEEeCCCCC-HHHHHH-HHHHHHHHhCCCceEEEEEcCCCCChh-hhhhh--hhhHHHHHHHHHHHHHHHHhc-
Confidence 466799999995332 111110 12233333333 78888888766522 22222 112223445666666667665
Q ss_pred CCCCCcEEEEecChhHHHHHHHHhh
Q 004766 557 YTQSRKLCIEGGSNGGLLVGACINQ 581 (732)
Q Consensus 557 ~~d~~~i~i~G~S~GG~l~~~~~~~ 581 (732)
....+|-|++||||+.+++.++.+
T Consensus 90 -~~~~~I~ilaHSMG~rv~~~aL~~ 113 (233)
T PF05990_consen 90 -PGIKRIHILAHSMGNRVLLEALRQ 113 (233)
T ss_pred -cCCceEEEEEeCchHHHHHHHHHH
Confidence 345799999999999999988765
|
|
| >KOG3967 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.12 Score=48.09 Aligned_cols=109 Identities=13% Similarity=0.114 Sum_probs=63.4
Q ss_pred EEEEcCCCCCCCCccEEEEEcCCCCccCCCCcC---------------hhHHHHHHhcCcEEEEEcccCCCCCchhHHhc
Q 004766 468 FIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFS---------------VSRTILMRHLGAVFCIANIRGGGEYGEEWHKG 532 (732)
Q Consensus 468 ~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~---------------~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~ 532 (732)
+|+..++. ...+.-++|++||+.-.... .|. +-+.+..+ .||-|++.|.- ..+.+++.
T Consensus 89 FiF~s~~~-lt~~~kLlVLIHGSGvVrAG-QWARrLIIN~~Ld~GTQiPyi~rAv~-~Gygviv~N~N----~~~kfye~ 161 (297)
T KOG3967|consen 89 FIFMSEDA-LTNPQKLLVLIHGSGVVRAG-QWARRLIINEDLDSGTQIPYIKRAVA-EGYGVIVLNPN----RERKFYEK 161 (297)
T ss_pred eEEEChhH-hcCccceEEEEecCceEecc-hHhhhhhhccccccCCcChHHHHHHH-cCCcEEEeCCc----hhhhhhhc
Confidence 34444443 23556699999997433211 111 11234445 89999998864 22334433
Q ss_pred ccccCC--ccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCe
Q 004766 533 GALAKK--QNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDL 585 (732)
Q Consensus 533 ~~~~~~--~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~ 585 (732)
-....+ ....+-+.-+-.+++.. ..+..++++-||+||++++-++.+.|+.
T Consensus 162 k~np~kyirt~veh~~yvw~~~v~p--a~~~sv~vvahsyGG~~t~~l~~~f~~d 214 (297)
T KOG3967|consen 162 KRNPQKYIRTPVEHAKYVWKNIVLP--AKAESVFVVAHSYGGSLTLDLVERFPDD 214 (297)
T ss_pred ccCcchhccchHHHHHHHHHHHhcc--cCcceEEEEEeccCChhHHHHHHhcCCc
Confidence 111111 12244444444444433 4567899999999999999999998873
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.95 Score=47.35 Aligned_cols=174 Identities=15% Similarity=0.110 Sum_probs=97.1
Q ss_pred EEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCCCCcEEe
Q 004766 219 EFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKL 298 (732)
Q Consensus 219 ~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l 298 (732)
.|.+|.+....... ...--|+....+.-+|+|.+|+...- ...||+|.+.+|. + +..+
T Consensus 62 ~l~vw~i~k~~~~~----q~~v~Pg~v~al~s~n~G~~l~ag~i-----~g~lYlWelssG~--L-----------L~v~ 119 (476)
T KOG0646|consen 62 LLHVWEILKKDQVV----QYIVLPGPVHALASSNLGYFLLAGTI-----SGNLYLWELSSGI--L-----------LNVL 119 (476)
T ss_pred cccccccCchhhhh----hhcccccceeeeecCCCceEEEeecc-----cCcEEEEEecccc--H-----------HHHH
Confidence 57777776433221 11112334456788999999976532 2459999999863 1 1122
Q ss_pred eecccceEE-EEEecCCeEEEEeCCCCCCceEEEEeCC---CC------CCceEeccCCCCCceeEEEEecC--CEEEEE
Q 004766 299 IDGFDAQYE-VIANDDTVFTFLTNKDAPKYKIIRVDLK---EP------NDWFEVIPEAERDVLESATAVNL--NQMIVS 366 (732)
Q Consensus 299 ~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~---~~------~~~~~l~~~~~~~~l~~~~~~~~--~~l~~~ 366 (732)
...+..... .|+.||.+|+-.+++ +.+..+.+. .. +....+-.| ...+.++.+..+ +..+++
T Consensus 120 ~aHYQ~ITcL~fs~dgs~iiTgskD----g~V~vW~l~~lv~a~~~~~~~p~~~f~~H--tlsITDl~ig~Gg~~~rl~T 193 (476)
T KOG0646|consen 120 SAHYQSITCLKFSDDGSHIITGSKD----GAVLVWLLTDLVSADNDHSVKPLHIFSDH--TLSITDLQIGSGGTNARLYT 193 (476)
T ss_pred HhhccceeEEEEeCCCcEEEecCCC----ccEEEEEEEeecccccCCCccceeeeccC--cceeEEEEecCCCccceEEE
Confidence 223433332 477777766543332 234444321 11 111111122 255777777653 345666
Q ss_pred EecCCeeEEEEEeCCCCceeeecccccceeeEeecccCCcEEEEEEecCCCCceEEEEECC
Q 004766 367 YLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLK 427 (732)
Q Consensus 367 ~~~~g~~~l~~~d~~~g~~~~~l~~~~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~ 427 (732)
...| ..+.+||+..|..+..+.+| ..+..+..+|.+..+|+.. .-+.+|..++-
T Consensus 194 aS~D--~t~k~wdlS~g~LLlti~fp-~si~av~lDpae~~~yiGt----~~G~I~~~~~~ 247 (476)
T KOG0646|consen 194 ASED--RTIKLWDLSLGVLLLTITFP-SSIKAVALDPAERVVYIGT----EEGKIFQNLLF 247 (476)
T ss_pred ecCC--ceEEEEEeccceeeEEEecC-CcceeEEEcccccEEEecC----CcceEEeeehh
Confidence 6666 57889999988887777776 3455667777776665542 23566666553
|
|
| >PF07082 DUF1350: Protein of unknown function (DUF1350); InterPro: IPR010765 This family consists of several hypothetical proteins from both cyanobacteria and plants | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.58 Score=45.60 Aligned_cols=102 Identities=12% Similarity=0.032 Sum_probs=64.3
Q ss_pred EEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChh-HHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCccHHHHH
Q 004766 467 MFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVS-RTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDF 545 (732)
Q Consensus 467 ~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~-~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~ 545 (732)
.|+..|+. +. .||++-||--....|..... ++..|+++||+|++.-|.-+-. |... .....+.|
T Consensus 8 ~wvl~P~~-----P~-gvihFiGGaf~ga~P~itYr~lLe~La~~Gy~ViAtPy~~tfD-----H~~~----A~~~~~~f 72 (250)
T PF07082_consen 8 SWVLIPPR-----PK-GVIHFIGGAFVGAAPQITYRYLLERLADRGYAVIATPYVVTFD-----HQAI----AREVWERF 72 (250)
T ss_pred cEEEeCCC-----CC-EEEEEcCcceeccCcHHHHHHHHHHHHhCCcEEEEEecCCCCc-----HHHH----HHHHHHHH
Confidence 45566642 22 67777787444445543322 3555666999999988864322 1111 12335667
Q ss_pred HHHHHHHHHcCCCCCC--cEEEEecChhHHHHHHHHhhCC
Q 004766 546 ISASEYLISAGYTQSR--KLCIEGGSNGGLLVGACINQRP 583 (732)
Q Consensus 546 ~~~~~~l~~~~~~d~~--~i~i~G~S~GG~l~~~~~~~~p 583 (732)
..|++.|.+++..++. .+.-+|||+|..+-+.+...++
T Consensus 73 ~~~~~~L~~~~~~~~~~lP~~~vGHSlGcklhlLi~s~~~ 112 (250)
T PF07082_consen 73 ERCLRALQKRGGLDPAYLPVYGVGHSLGCKLHLLIGSLFD 112 (250)
T ss_pred HHHHHHHHHhcCCCcccCCeeeeecccchHHHHHHhhhcc
Confidence 7888888877544443 5777999999999888776643
|
Members of this family are typically around 250 residues in length. The function of this family is unknown but the species distribution indicates that the family may be involved in photosynthesis. |
| >COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.48 E-value=4.6 Score=46.42 Aligned_cols=245 Identities=14% Similarity=0.110 Sum_probs=122.6
Q ss_pred EeCCEEEEEEEcCCCCeeEEEEEeCCCCCceEEeCCCCcCCCCCEEEEeEEECCCCcEEEEEEe-----cc---------
Q 004766 88 KRGNKYFYFHNTGLQPQSVLYVQDSLDAKAKVLLDPNTLSDDGTAALIKVSVSEDAKYLAYALS-----YS--------- 153 (732)
Q Consensus 88 ~~g~~~~~~~~~~~~~~~~l~~r~~~~~~~~~l~D~~~l~~~~~~~~~~~~~SPDG~~la~~~~-----~~--------- 153 (732)
++|..+++..+++.. ...+|..... + .+.. ....+..+.|||+|+++++... ..
T Consensus 69 pdg~~~~~~~~~~~~-~~~l~l~~~~-g----~~~~------~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 136 (620)
T COG1506 69 PDGSVLAFVSTDGGR-VAQLYLVDVG-G----LITK------TAFGVSDARWSPDGDRIAFLTAEGASKRDGGDHLFVDR 136 (620)
T ss_pred CCCCEEEEEeccCCC-cceEEEEecC-C----ceee------eecccccceeCCCCCeEEEEecccccccCCceeeeecc
Confidence 355556666544433 3446665432 2 1111 1233557889999999998311 11
Q ss_pred --------CCceEEEEEEECCCCceecccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCCcccEEEEEEC
Q 004766 154 --------GSDWATIKLMRIEDQIVEADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFL 225 (732)
Q Consensus 154 --------G~e~~~i~v~dl~~g~~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l 225 (732)
|.+...++++|.++ ...........+..++|.+|++.++........ ...-...+.+..
T Consensus 137 ~~~~~~~~g~~~~~l~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~ 203 (620)
T COG1506 137 LPVWFDGRGGERSDLYVVDIES-KLIKLGLGNLDVVSFATDGDGRLVASIRLDDDA------------DPWVTNLYVLIE 203 (620)
T ss_pred cceeecCCCCcccceEEEccCc-ccccccCCCCceeeeeeCCCCceeEEeeecccc------------CCceEeeEEEec
Confidence 22456677777765 222222233334566777667777776644310 011122233322
Q ss_pred CCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCC---cceEEEEEEeCCCCCCCcccccccCCCCCcEEeeecc
Q 004766 226 GTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENC---DPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGF 302 (732)
Q Consensus 226 gt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~---~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~ 302 (732)
+++. +... .+ .......+.+.+||+.+++...... .....+++.+.+.+. ........
T Consensus 204 ~~~~---~~~~-~~-~~~~~~~~~~~~~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~d~~~~~~ 264 (620)
T COG1506 204 GNGE---LESL-TP-GEGSISKLAFDADGKSIALLGTESDRGLAEGDFILLLDGELGE--------------VDGDLSSG 264 (620)
T ss_pred CCCc---eEEE-cC-CCceeeeeeeCCCCCeeEEeccCCccCccccceEEEEeccccc--------------cceeeccC
Confidence 2221 1121 11 2234567889999998887765443 123456666622221 00101111
Q ss_pred c--ceE--EEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecCCEEEEEEecCC-eeEEEE
Q 004766 303 D--AQY--EVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDV-KYVLQI 377 (732)
Q Consensus 303 ~--~~~--~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~~l~~~~~~~g-~~~l~~ 377 (732)
+ ... ....-++..++|++........++..+..+.. ..+.. .+...+..+.+ .++.+++...... .+++++
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~--~~~~~-~~~~~v~~f~~-~~~~~~~~~s~~~~p~~i~~ 340 (620)
T COG1506 265 DDTRGAWAVEGGLDGDGLLFIATDGGGSSPLFRVDDLGGG--VEGLS-GDDGGVPGFDV-DGRKLALAYSSPTEPPEIYL 340 (620)
T ss_pred CcccCcHHhccccCCCcEEEEEecCCCceEEEEEeccCCc--eeeec-CCCceEEEEee-CCCEEEEEecCCCCccceEE
Confidence 0 000 01123567777777764445566666544433 22222 22356777776 3367777666554 568999
Q ss_pred EeC
Q 004766 378 RDL 380 (732)
Q Consensus 378 ~d~ 380 (732)
++.
T Consensus 341 ~~~ 343 (620)
T COG1506 341 YDR 343 (620)
T ss_pred EcC
Confidence 886
|
|
| >PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.05 Score=36.53 Aligned_cols=30 Identities=20% Similarity=0.160 Sum_probs=21.4
Q ss_pred eEEEeEEecCCcEEEEEEecCCcceEEEEE
Q 004766 244 YIFSGHVTEDGQYLVMCIEENCDPVNKVYY 273 (732)
Q Consensus 244 ~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~ 273 (732)
....+.|||||++|+|++........+||+
T Consensus 10 ~~~~p~~SpDGk~i~f~s~~~~~g~~diy~ 39 (39)
T PF07676_consen 10 DDGSPAWSPDGKYIYFTSNRNDRGSFDIYV 39 (39)
T ss_dssp SEEEEEE-TTSSEEEEEEECT--SSEEEEE
T ss_pred cccCEEEecCCCEEEEEecCCCCCCcCEEC
Confidence 456899999999999999876222566774
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A .... |
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.21 Score=49.67 Aligned_cols=87 Identities=15% Similarity=0.146 Sum_probs=58.8
Q ss_pred EEeCCCC--cCCC---CCEEEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecccc----cceeeeeEEEEeCC
Q 004766 119 VLLDPNT--LSDD---GTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADAL----SWFKFSSIAWTHDS 189 (732)
Q Consensus 119 ~l~D~~~--l~~~---~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~----~~~~~~~~~WspDg 189 (732)
.++|+.. +.+. +..++..+++.|+.-.|..+. ++...|++|+++++..+.... .....-++.|++||
T Consensus 118 rVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~----SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~g 193 (385)
T KOG1034|consen 118 RVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSA----SKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDG 193 (385)
T ss_pred EEEecchhhhccceeccCccchhhhcCCCCCcEEEEe----cCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCC
Confidence 4567743 2221 346788999999987777665 344689999999987543211 11124678999999
Q ss_pred cEEEEEEecCCCCCCCCCCCCcccCCcccEEEEEECCCC
Q 004766 190 KGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTK 228 (732)
Q Consensus 190 ~~l~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~ 228 (732)
++|+-. +..+.|.+|++..+
T Consensus 194 d~i~Sc-------------------GmDhslk~W~l~~~ 213 (385)
T KOG1034|consen 194 DRIASC-------------------GMDHSLKLWRLNVK 213 (385)
T ss_pred Ceeecc-------------------CCcceEEEEecChh
Confidence 977754 45567888888754
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.38 E-value=1.6 Score=48.99 Aligned_cols=93 Identities=15% Similarity=0.163 Sum_probs=66.4
Q ss_pred CCceEEEEeCCCCCCceEeccCCCCCceeEEEEecCCEEEEEEecCCeeEEEEEeCCCCceeeecccccceeeEeecccC
Q 004766 325 PKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARRE 404 (732)
Q Consensus 325 ~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~~l~~~~~~~g~~~l~~~d~~~g~~~~~l~~~~g~v~~~~~s~d 404 (732)
..+.|..+|..+..-.+.+..+. ..|.++.+++|++.+++..-| +.|++||+.+|..+--+-++. .+.+++++|.
T Consensus 554 ddf~I~vvD~~t~kvvR~f~gh~--nritd~~FS~DgrWlisasmD--~tIr~wDlpt~~lID~~~vd~-~~~sls~SPn 628 (910)
T KOG1539|consen 554 DDFSIRVVDVVTRKVVREFWGHG--NRITDMTFSPDGRWLISASMD--STIRTWDLPTGTLIDGLLVDS-PCTSLSFSPN 628 (910)
T ss_pred CceeEEEEEchhhhhhHHhhccc--cceeeeEeCCCCcEEEEeecC--CcEEEEeccCcceeeeEecCC-cceeeEECCC
Confidence 35789999988776445555665 578999999988877777777 579999999888755444442 2346788999
Q ss_pred CcEEEEEEecCCCCceEEEEE
Q 004766 405 DSVVFISFTSFLIPGIVYQCN 425 (732)
Q Consensus 405 ~~~l~~~~ss~~~p~~~y~~d 425 (732)
|+.|+-+...- ..+|.|.
T Consensus 629 gD~LAT~Hvd~---~gIylWs 646 (910)
T KOG1539|consen 629 GDFLATVHVDQ---NGIYLWS 646 (910)
T ss_pred CCEEEEEEecC---ceEEEEE
Confidence 99776554442 3566664
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.36 E-value=2.2 Score=45.55 Aligned_cols=112 Identities=14% Similarity=0.150 Sum_probs=64.2
Q ss_pred EEEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceec-ccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCC
Q 004766 132 AALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEA-DALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGT 210 (732)
Q Consensus 132 ~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~-~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~ 210 (732)
..+..-+|||||.-|.-+ .|...|.+|.-. |-... ..........++|.|++..++|+..+
T Consensus 105 ~A~~~gRW~~dGtgLlt~-----GEDG~iKiWSrs-GMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g~------------ 166 (737)
T KOG1524|consen 105 AAISSGRWSPDGAGLLTA-----GEDGVIKIWSRS-GMLRSTVVQNEESIRCARWAPNSNSIVFCQGG------------ 166 (737)
T ss_pred hhhhhcccCCCCceeeee-----cCCceEEEEecc-chHHHHHhhcCceeEEEEECCCCCceEEecCC------------
Confidence 345667899999876533 244689999853 42111 11111234789999999999998522
Q ss_pred cccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCC
Q 004766 211 ETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSA 278 (732)
Q Consensus 211 ~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~ 278 (732)
.++.-.+.-. ..++-+. .+++.+..+.|++....|+-. +. ..+.-++|..+
T Consensus 167 --------h~~IKpL~~n--~k~i~Wk--AHDGiiL~~~W~~~s~lI~sg---GE--D~kfKvWD~~G 217 (737)
T KOG1524|consen 167 --------HISIKPLAAN--SKIIRWR--AHDGLVLSLSWSTQSNIIASG---GE--DFRFKIWDAQG 217 (737)
T ss_pred --------eEEEeecccc--cceeEEe--ccCcEEEEeecCccccceeec---CC--ceeEEeecccC
Confidence 2343333221 1122232 234567788999988876532 22 23344556554
|
|
| >PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics [] | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.066 Score=52.85 Aligned_cols=85 Identities=14% Similarity=0.055 Sum_probs=52.8
Q ss_pred cEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCccHHHHHHHH-HHHHHHcCCCCC
Q 004766 482 PCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISA-SEYLISAGYTQS 560 (732)
Q Consensus 482 P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~-~~~l~~~~~~d~ 560 (732)
+.|+.+|++.|+. ..|. .+...|...++.|..+..+|-+. ......+++++++. ++.+.+... .
T Consensus 1 ~~lf~~p~~gG~~--~~y~-~la~~l~~~~~~v~~i~~~~~~~----------~~~~~~si~~la~~y~~~I~~~~~--~ 65 (229)
T PF00975_consen 1 RPLFCFPPAGGSA--SSYR-PLARALPDDVIGVYGIEYPGRGD----------DEPPPDSIEELASRYAEAIRARQP--E 65 (229)
T ss_dssp -EEEEESSTTCSG--GGGH-HHHHHHTTTEEEEEEECSTTSCT----------TSHEESSHHHHHHHHHHHHHHHTS--S
T ss_pred CeEEEEcCCccCH--HHHH-HHHHhCCCCeEEEEEEecCCCCC----------CCCCCCCHHHHHHHHHHHhhhhCC--C
Confidence 3578889988753 3454 35566662258888999888541 11122344555443 333333221 1
Q ss_pred CcEEEEecChhHHHHHHHHhh
Q 004766 561 RKLCIEGGSNGGLLVGACINQ 581 (732)
Q Consensus 561 ~~i~i~G~S~GG~l~~~~~~~ 581 (732)
+.+.++|+|+||.++..++.+
T Consensus 66 gp~~L~G~S~Gg~lA~E~A~~ 86 (229)
T PF00975_consen 66 GPYVLAGWSFGGILAFEMARQ 86 (229)
T ss_dssp SSEEEEEETHHHHHHHHHHHH
T ss_pred CCeeehccCccHHHHHHHHHH
Confidence 389999999999999988774
|
Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A .... |
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=95.32 E-value=3.2 Score=40.86 Aligned_cols=104 Identities=22% Similarity=0.308 Sum_probs=56.0
Q ss_pred cCCeEEEEeCCCCCCceEEEEeCCCCCC-ceEeccCCC-CCce-------eEEEEecCCEEEEEEecCCeeEEEEEeCCC
Q 004766 312 DDTVFTFLTNKDAPKYKIIRVDLKEPND-WFEVIPEAE-RDVL-------ESATAVNLNQMIVSYLSDVKYVLQIRDLKN 382 (732)
Q Consensus 312 dg~~l~~~s~~~~~~~~l~~~d~~~~~~-~~~l~~~~~-~~~l-------~~~~~~~~~~l~~~~~~~g~~~l~~~d~~~ 382 (732)
+++.+++... ...|+.+|+++++. |..-+.... ...+ ..+.+.. +.+++. ..++. +..+|+.+
T Consensus 121 ~~~~~~~~~~----~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~-~~~g~--~~~~d~~t 192 (238)
T PF13360_consen 121 DGDRLYVGTS----SGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISD-GRVYVS-SGDGR--VVAVDLAT 192 (238)
T ss_dssp ETTEEEEEET----CSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCT-TEEEEE-CCTSS--EEEEETTT
T ss_pred ecCEEEEEec----cCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEEC-CEEEEE-cCCCe--EEEEECCC
Confidence 4777877654 45799999998862 333332211 1111 2223333 555554 44432 55559988
Q ss_pred CceeeecccccceeeEeecccCCcEEEEEEecCCCCceEEEEECCCCC
Q 004766 383 GSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 430 (732)
Q Consensus 383 g~~~~~l~~~~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~~ 430 (732)
|+.+-... ...+.. ....+++.+++.. . ...++.+|+.+|+
T Consensus 193 g~~~w~~~--~~~~~~-~~~~~~~~l~~~~-~---~~~l~~~d~~tG~ 233 (238)
T PF13360_consen 193 GEKLWSKP--ISGIYS-LPSVDGGTLYVTS-S---DGRLYALDLKTGK 233 (238)
T ss_dssp TEEEEEEC--SS-ECE-CEECCCTEEEEEE-T---TTEEEEEETTTTE
T ss_pred CCEEEEec--CCCccC-CceeeCCEEEEEe-C---CCEEEEEECCCCC
Confidence 87532222 222222 1234566666554 2 4789999999994
|
... |
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.14 Score=56.01 Aligned_cols=133 Identities=15% Similarity=0.203 Sum_probs=77.9
Q ss_pred CCceEEeCCCCcCCC-----CCEEEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecccccc-eeeeeEEEEeC
Q 004766 115 AKAKVLLDPNTLSDD-----GTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSW-FKFSSIAWTHD 188 (732)
Q Consensus 115 ~~~~~l~D~~~l~~~-----~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~~~-~~~~~~~WspD 188 (732)
|-.-||+|++.-+.. ....+..++|||+|+++|-.. .| ....++||+++.-..+.+..+. ......+|||.
T Consensus 57 GCvVVlfn~~~~tQ~hlvnssRk~~t~vAfS~~GryvatGE--cG-~~pa~kVw~la~h~vVAEfvdHKY~vtcvaFsp~ 133 (1080)
T KOG1408|consen 57 GCVVVLFNVDSCTQSHLVNSSRKPLTCVAFSQNGRYVATGE--CG-RTPASKVWSLAFHGVVAEFVDHKYNVTCVAFSPG 133 (1080)
T ss_pred CcEEEEEcccccchhheecccCcceeEEEEcCCCcEEEecc--cC-CCccceeeeeccccchhhhhhccccceeeeecCC
Confidence 444667776543322 123578999999999998553 22 2357999999876644433221 12478999999
Q ss_pred CcEEEEEEecCCCCCCCCCCCCcccCCccc--EEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCc
Q 004766 189 SKGFFYSRYPAPKEGKDMDAGTETDSNLYH--EFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCD 266 (732)
Q Consensus 189 g~~l~y~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~ 266 (732)
+++|.-+.. +... .+|-|+.....+... -...+..+++|.||.|.+-..++
T Consensus 134 ~kyvvSVGs-----------------QHDMIVnv~dWr~N~~~asnk-------iss~Vsav~fsEdgSYfvT~gnr--- 186 (1080)
T KOG1408|consen 134 NKYVVSVGS-----------------QHDMIVNVNDWRVNSSGASNK-------ISSVVSAVAFSEDGSYFVTSGNR--- 186 (1080)
T ss_pred CcEEEeecc-----------------ccceEEEhhhhhhcccccccc-------cceeEEEEEEccCCceeeeeeee---
Confidence 998875532 1112 233334332222111 12234578899999998766544
Q ss_pred ceEEEEEEeCCC
Q 004766 267 PVNKVYYCDLSA 278 (732)
Q Consensus 267 ~~~~l~~~d~~~ 278 (732)
.-.+|.++...
T Consensus 187 -Hvk~wyl~~~~ 197 (1080)
T KOG1408|consen 187 -HVKLWYLQIQS 197 (1080)
T ss_pred -eEEEEEeeccc
Confidence 34566666543
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=95.26 E-value=3.4 Score=40.78 Aligned_cols=257 Identities=15% Similarity=0.089 Sum_probs=128.7
Q ss_pred EEEeEEEC--CCC-cEEEEEEecc-CCceEEEEEEECCCCceecccc--cceeeeeEEEEeCCcEEEEEEecCCCCCCCC
Q 004766 133 ALIKVSVS--EDA-KYLAYALSYS-GSDWATIKLMRIEDQIVEADAL--SWFKFSSIAWTHDSKGFFYSRYPAPKEGKDM 206 (732)
Q Consensus 133 ~~~~~~~S--PDG-~~la~~~~~~-G~e~~~i~v~dl~~g~~~~~~~--~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~ 206 (732)
.+.+..|| ||- -+||..+-.. -....+|.-.|.++|+.+.... ......-+.|.||.+.++= ..
T Consensus 46 ~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~p-dl--------- 115 (364)
T KOG0290|consen 46 PLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYP-DL--------- 115 (364)
T ss_pred ceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCc-ch---------
Confidence 34445555 333 3466654222 2223455556667787654331 1111356899999875542 00
Q ss_pred CCCCcccCCcccEEEEEECCCCCC--CCeEEEecCCCC---eeEEEeEEec-CCcEEEEEEecCCcceEEEEEEeCCCCC
Q 004766 207 DAGTETDSNLYHEFYYHFLGTKQS--EDILCWKDPEHP---KYIFSGHVTE-DGQYLVMCIEENCDPVNKVYYCDLSALP 280 (732)
Q Consensus 207 ~~~~~~~~~~~~~v~~~~lgt~~~--~~~~v~~~~~~~---~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~~l~~~d~~~~~ 280 (732)
+ ......+.+|+++.... +-..+.....+. .-..++.|.. |-++|..++-+ + + .-++|++++.
T Consensus 116 ----L--ATs~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiD-T--T--CTiWdie~~~ 184 (364)
T KOG0290|consen 116 ----L--ATSSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSID-T--T--CTIWDIETGV 184 (364)
T ss_pred ----h--hcccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeeccc-C--e--EEEEEEeecc
Confidence 0 11223467777774322 111122111111 1234566655 44555433322 2 2 3455766642
Q ss_pred CCcccccccCCCCCcEEeeecccceEE-EEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCC--CCceeEEEE
Q 004766 281 EGLEGFKKRDGLLPFVKLIDGFDAQYE-VIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAE--RDVLESATA 357 (732)
Q Consensus 281 ~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~--~~~l~~~~~ 357 (732)
.+ .-..+|+......+. .|+..|..++..... .+.+-.+|+...+. .+++-+.+ ...+.-++|
T Consensus 185 ~~----------~vkTQLIAHDKEV~DIaf~~~s~~~FASvga---DGSvRmFDLR~leH-STIIYE~p~~~~pLlRLsw 250 (364)
T KOG0290|consen 185 SG----------TVKTQLIAHDKEVYDIAFLKGSRDVFASVGA---DGSVRMFDLRSLEH-STIIYEDPSPSTPLLRLSW 250 (364)
T ss_pred cc----------ceeeEEEecCcceeEEEeccCccceEEEecC---CCcEEEEEeccccc-ceEEecCCCCCCcceeecc
Confidence 11 112355554333333 366655554433332 45688889887653 34443332 355666777
Q ss_pred ecCCE-EEEEEecCCeeEEEEEeCCC-CceeeecccccceeeEeecccCCcEEEEEEecCCCCceEEEEECCC
Q 004766 358 VNLNQ-MIVSYLSDVKYVLQIRDLKN-GSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKT 428 (732)
Q Consensus 358 ~~~~~-l~~~~~~~g~~~l~~~d~~~-g~~~~~l~~~~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~ 428 (732)
.+.+- +.++...+ ..+|.++|+.. +..+.+|..+.+.|.++.+.|.+..-.++.... .+...+|+..
T Consensus 251 nkqDpnymATf~~d-S~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD---~qaliWDl~q 319 (364)
T KOG0290|consen 251 NKQDPNYMATFAMD-SNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDD---CQALIWDLQQ 319 (364)
T ss_pred CcCCchHHhhhhcC-CceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCc---ceEEEEeccc
Confidence 76332 33333333 35788888753 233345555678888899888776665555443 3455667653
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=95.19 E-value=3.2 Score=40.93 Aligned_cols=187 Identities=17% Similarity=0.089 Sum_probs=91.0
Q ss_pred ECCCCcEEEEEEeccCCceEEEEEEECCCCceecc-cccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCCcc
Q 004766 139 VSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEAD-ALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLY 217 (732)
Q Consensus 139 ~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~-~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~~~ 217 (732)
..+++++|... + ++ ..|+.+|+.+|+.+-. .........+ ..++..|++... .
T Consensus 32 ~~~~~~~v~~~-~--~~--~~l~~~d~~tG~~~W~~~~~~~~~~~~--~~~~~~v~v~~~-------------------~ 85 (238)
T PF13360_consen 32 AVPDGGRVYVA-S--GD--GNLYALDAKTGKVLWRFDLPGPISGAP--VVDGGRVYVGTS-------------------D 85 (238)
T ss_dssp EEEETTEEEEE-E--TT--SEEEEEETTTSEEEEEEECSSCGGSGE--EEETTEEEEEET-------------------T
T ss_pred EEEeCCEEEEE-c--CC--CEEEEEECCCCCEEEEeecccccccee--eecccccccccc-------------------e
Confidence 34456655544 2 22 4899999999985421 1111101222 335556666541 1
Q ss_pred cEEEEEECCCCCCCCeEEEec---C-CCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCCC
Q 004766 218 HEFYYHFLGTKQSEDILCWKD---P-EHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLL 293 (732)
Q Consensus 218 ~~v~~~~lgt~~~~~~~v~~~---~-~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~ 293 (732)
..|+.++..++. ++++. . +............+|..+++... ...|+.+|+.+|...
T Consensus 86 ~~l~~~d~~tG~----~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~l~~~d~~tG~~~----------- 145 (238)
T PF13360_consen 86 GSLYALDAKTGK----VLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTS-----SGKLVALDPKTGKLL----------- 145 (238)
T ss_dssp SEEEEEETTTSC----EEEEEEE-SSCTCSTB--SEEEEETTEEEEEET-----CSEEEEEETTTTEEE-----------
T ss_pred eeeEecccCCcc----eeeeeccccccccccccccCceEecCEEEEEec-----cCcEEEEecCCCcEE-----------
Confidence 267888876664 23331 1 11112223334445777766543 245788887775311
Q ss_pred CcEEeeeccc----------ceEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCC-CceEeccCCCCCceeEEEEecCCE
Q 004766 294 PFVKLIDGFD----------AQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPN-DWFEVIPEAERDVLESATAVNLNQ 362 (732)
Q Consensus 294 ~~~~l~~~~~----------~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~-~~~~l~~~~~~~~l~~~~~~~~~~ 362 (732)
|..-..... ........ ++.+|+.+..+ .++.+|+++++ .|+.. . ..+.......++.
T Consensus 146 -w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~g----~~~~~d~~tg~~~w~~~-~----~~~~~~~~~~~~~ 214 (238)
T PF13360_consen 146 -WKYPVGEPRGSSPISSFSDINGSPVIS-DGRVYVSSGDG----RVVAVDLATGEKLWSKP-I----SGIYSLPSVDGGT 214 (238)
T ss_dssp -EEEESSTT-SS--EEEETTEEEEEECC-TTEEEEECCTS----SEEEEETTTTEEEEEEC-S----S-ECECEECCCTE
T ss_pred -EEeecCCCCCCcceeeecccccceEEE-CCEEEEEcCCC----eEEEEECCCCCEEEEec-C----CCccCCceeeCCE
Confidence 111111100 00112222 34666554432 37777998876 23211 1 1233312233367
Q ss_pred EEEEEecCCeeEEEEEeCCCCce
Q 004766 363 MIVSYLSDVKYVLQIRDLKNGSL 385 (732)
Q Consensus 363 l~~~~~~~g~~~l~~~d~~~g~~ 385 (732)
+++.. .+ .+|+.+|+.+|+.
T Consensus 215 l~~~~-~~--~~l~~~d~~tG~~ 234 (238)
T PF13360_consen 215 LYVTS-SD--GRLYALDLKTGKV 234 (238)
T ss_dssp EEEEE-TT--TEEEEEETTTTEE
T ss_pred EEEEe-CC--CEEEEEECCCCCE
Confidence 77666 44 5899999999875
|
... |
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.17 E-value=5.6 Score=42.67 Aligned_cols=246 Identities=13% Similarity=0.046 Sum_probs=133.9
Q ss_pred EeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceec-ccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCccc
Q 004766 135 IKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEA-DALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETD 213 (732)
Q Consensus 135 ~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~-~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~ 213 (732)
......|+|..+...... +. .+.+.+........ .........+.+.+++++.+|....+
T Consensus 34 ~~v~~~~~g~~~~v~~~~--~~--~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~--------------- 94 (381)
T COG3391 34 GGVAVNPDGTQVYVANSG--SN--DVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGD--------------- 94 (381)
T ss_pred ceeEEcCccCEEEEEeec--Cc--eeeecccccceeeeeccCCCccccceeeCCCCCeEEEecCC---------------
Confidence 367788999777666422 21 56666655222211 11111122567788888877766422
Q ss_pred CCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCCC
Q 004766 214 SNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLL 293 (732)
Q Consensus 214 ~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~ 293 (732)
...|...+..+... +....-.. .-..++++|||+.+++..... ..+.+.++|..+..
T Consensus 95 ---~~~v~vid~~~~~~----~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~--~~~~vsvid~~t~~------------- 151 (381)
T COG3391 95 ---SNTVSVIDTATNTV----LGSIPVGL-GPVGLAVDPDGKYVYVANAGN--GNNTVSVIDAATNK------------- 151 (381)
T ss_pred ---CCeEEEEcCcccce----eeEeeecc-CCceEEECCCCCEEEEEeccc--CCceEEEEeCCCCe-------------
Confidence 23456656443321 11111100 224789999999997765432 24678888877632
Q ss_pred CcEEeeecccceEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCce-E---eccCCCCCceeEEEEecC-CEEEEEEe
Q 004766 294 PFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWF-E---VIPEAERDVLESATAVNL-NQMIVSYL 368 (732)
Q Consensus 294 ~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~-~---l~~~~~~~~l~~~~~~~~-~~l~~~~~ 368 (732)
.......+....-..++|+|..+|... .....|..+|.++...++ . .++.. ..-..+.+.++ .++|+...
T Consensus 152 ~~~~~~vG~~P~~~a~~p~g~~vyv~~---~~~~~v~vi~~~~~~v~~~~~~~~~~~~--~~P~~i~v~~~g~~~yV~~~ 226 (381)
T COG3391 152 VTATIPVGNTPTGVAVDPDGNKVYVTN---SDDNTVSVIDTSGNSVVRGSVGSLVGVG--TGPAGIAVDPDGNRVYVAND 226 (381)
T ss_pred EEEEEecCCCcceEEECCCCCeEEEEe---cCCCeEEEEeCCCcceeccccccccccC--CCCceEEECCCCCEEEEEec
Confidence 111222222222235889999888654 234578888866554111 0 11111 11234556654 45776665
Q ss_pred cCCeeEEEEEeCCCCceeee-cccccceeeEeecccCCcEEEEEEecCCCCceEEEEECCCCC
Q 004766 369 SDVKYVLQIRDLKNGSLLHQ-LPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 430 (732)
Q Consensus 369 ~~g~~~l~~~d~~~g~~~~~-l~~~~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~~ 430 (732)
.+....+.++|..++..... +....+....+..+|+++.+++.... ...++..|..+..
T Consensus 227 ~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~---~~~V~vid~~~~~ 286 (381)
T COG3391 227 GSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQ---GGTVSVIDGATDR 286 (381)
T ss_pred cCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecC---CCeEEEEeCCCCc
Confidence 55445788889887665322 22222123355678999877665444 6789999987653
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.13 E-value=4 Score=40.82 Aligned_cols=191 Identities=12% Similarity=0.071 Sum_probs=106.3
Q ss_pred EEEEeEEECCCCc--EEEEEEeccCCceEEEEEEECCCCceec---ccccceeeeeEEEEeCCcEEEEEEecCCCCCCCC
Q 004766 132 AALIKVSVSEDAK--YLAYALSYSGSDWATIKLMRIEDQIVEA---DALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDM 206 (732)
Q Consensus 132 ~~~~~~~~SPDG~--~la~~~~~~G~e~~~i~v~dl~~g~~~~---~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~ 206 (732)
.++..+.|+|+-. +|. .|++...|-+|+...=+.+. .... .+..++-.|.|| |+.+-
T Consensus 84 gsitaL~F~~~~S~shLl-----S~sdDG~i~iw~~~~W~~~~slK~H~~--~Vt~lsiHPS~K-LALsV---------- 145 (362)
T KOG0294|consen 84 GSITALKFYPPLSKSHLL-----SGSDDGHIIIWRVGSWELLKSLKAHKG--QVTDLSIHPSGK-LALSV---------- 145 (362)
T ss_pred cceEEEEecCCcchhhee-----eecCCCcEEEEEcCCeEEeeeeccccc--ccceeEecCCCc-eEEEE----------
Confidence 3466788888774 444 34555689999975433221 1122 247889999987 44442
Q ss_pred CCCCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccc
Q 004766 207 DAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGF 286 (732)
Q Consensus 207 ~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~ 286 (732)
++...+..|+|-.+... .+..... ....+.|+|.|.+.++...+ .-++|-.+.+..
T Consensus 146 --------g~D~~lr~WNLV~Gr~a--~v~~L~~---~at~v~w~~~Gd~F~v~~~~----~i~i~q~d~A~v------- 201 (362)
T KOG0294|consen 146 --------GGDQVLRTWNLVRGRVA--FVLNLKN---KATLVSWSPQGDHFVVSGRN----KIDIYQLDNASV------- 201 (362)
T ss_pred --------cCCceeeeehhhcCccc--eeeccCC---cceeeEEcCCCCEEEEEecc----EEEEEecccHhH-------
Confidence 23446778888665433 2322222 22458999999987766532 244555554331
Q ss_pred cccCCCCCcEEeeecccceEEEEEe-cCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEec--CCEE
Q 004766 287 KKRDGLLPFVKLIDGFDAQYEVIAN-DDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVN--LNQM 363 (732)
Q Consensus 287 ~~~~~~~~~~~l~~~~~~~~~~~s~-dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~--~~~l 363 (732)
+..+... .......+ ++..|++- +.+..+-..|.+.......+..|. ..+.++.... ...+
T Consensus 202 --------~~~i~~~--~r~l~~~~l~~~~L~vG----~d~~~i~~~D~ds~~~~~~~~AH~--~RVK~i~~~~~~~~~~ 265 (362)
T KOG0294|consen 202 --------FREIENP--KRILCATFLDGSELLVG----GDNEWISLKDTDSDTPLTEFLAHE--NRVKDIASYTNPEHEY 265 (362)
T ss_pred --------hhhhhcc--ccceeeeecCCceEEEe----cCCceEEEeccCCCccceeeecch--hheeeeEEEecCCceE
Confidence 1111111 11111122 34555432 223346666766544455566665 5577776543 3578
Q ss_pred EEEEecCCeeEEEEEeCCC
Q 004766 364 IVSYLSDVKYVLQIRDLKN 382 (732)
Q Consensus 364 ~~~~~~~g~~~l~~~d~~~ 382 (732)
+++...+| .|.+||++.
T Consensus 266 lvTaSSDG--~I~vWd~~~ 282 (362)
T KOG0294|consen 266 LVTASSDG--FIKVWDIDM 282 (362)
T ss_pred EEEeccCc--eEEEEEccc
Confidence 88888886 677888763
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.05 E-value=4 Score=40.37 Aligned_cols=214 Identities=14% Similarity=0.064 Sum_probs=106.6
Q ss_pred eeEEEEeCC-cEEEEEEecCCCCCCCCCCCCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEE
Q 004766 181 SSIAWTHDS-KGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVM 259 (732)
Q Consensus 181 ~~~~WspDg-~~l~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~ 259 (732)
.+++++|-. +.++|.+.+. ...++.+..+.+.- +++. ...+.-|+..-.+||||++|+.
T Consensus 71 Hgi~~~p~~~ravafARrPG------------------tf~~vfD~~~~~~p-v~~~-s~~~RHfyGHGvfs~dG~~LYA 130 (366)
T COG3490 71 HGIAFHPALPRAVAFARRPG------------------TFAMVFDPNGAQEP-VTLV-SQEGRHFYGHGVFSPDGRLLYA 130 (366)
T ss_pred CCeecCCCCcceEEEEecCC------------------ceEEEECCCCCcCc-EEEe-cccCceeecccccCCCCcEEEe
Confidence 567777764 5677776544 12455565554332 2232 2223345556789999999987
Q ss_pred EEecCCcceEEEEEEeCCCCCCCcccccccCCCCCcEEee-ecccceEEEEEecCCeEEEEeC----C----------CC
Q 004766 260 CIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLI-DGFDAQYEVIANDDTVFTFLTN----K----------DA 324 (732)
Q Consensus 260 ~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~s~dg~~l~~~s~----~----------~~ 324 (732)
+-++.+....-|-++|...+-+. .-... .+...--..|.+||+.+.+.-. . +.
T Consensus 131 TEndfd~~rGViGvYd~r~~fqr------------vgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNlds 198 (366)
T COG3490 131 TENDFDPNRGVIGVYDAREGFQR------------VGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDS 198 (366)
T ss_pred ecCCCCCCCceEEEEecccccce------------ecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhh
Confidence 76554433445666776542100 10111 1111111248889987775432 0 11
Q ss_pred CCceEEEEeCCCCCCce-EeccCC-CCCceeEEEEecCCEEEEEEecCCe----eEEEEEeCCCCceeeecccccc----
Q 004766 325 PKYKIIRVDLKEPNDWF-EVIPEA-ERDVLESATAVNLNQMIVSYLSDVK----YVLQIRDLKNGSLLHQLPIEIG---- 394 (732)
Q Consensus 325 ~~~~l~~~d~~~~~~~~-~l~~~~-~~~~l~~~~~~~~~~l~~~~~~~g~----~~l~~~d~~~g~~~~~l~~~~g---- 394 (732)
-.-.|..+|..++.-++ ...|+. ....+.-+.+.+++.+++...-.|. +-|.-.-. .|+.++.+.+|..
T Consensus 199 MePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~-~g~~l~~~~~pee~~~~ 277 (366)
T COG3490 199 MEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFR-KGEPLEFLDLPEEQTAA 277 (366)
T ss_pred cCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeecc-CCCcCcccCCCHHHHHH
Confidence 12356666655554111 122321 1233455666666777776554332 33333322 2555566665521
Q ss_pred ---eeeEeecccCCcEEEEEEecCCCCceEEEEECCCCC
Q 004766 395 ---SVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 430 (732)
Q Consensus 395 ---~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~~ 430 (732)
.+.+++.+.+...+ ..+|+.- .....+|.++|.
T Consensus 278 ~anYigsiA~n~~~glV--~lTSP~G-N~~vi~da~tG~ 313 (366)
T COG3490 278 FANYIGSIAANRRDGLV--ALTSPRG-NRAVIWDAATGA 313 (366)
T ss_pred HHhhhhheeecccCCeE--EEecCCC-CeEEEEEcCCCc
Confidence 23344444443333 3445432 456788999984
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=95.03 E-value=1.2 Score=49.45 Aligned_cols=150 Identities=10% Similarity=0.107 Sum_probs=79.4
Q ss_pred EeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCCCCcEEeeecccceEEEEEecCCeEEEEeCCCCCC
Q 004766 247 SGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPK 326 (732)
Q Consensus 247 ~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~ 326 (732)
.+.++|||+++++++.+... ...+..++..... +.... .... ...+.++|+..++ + .
T Consensus 239 ~v~~spdGk~afvTsyNsE~-G~tl~em~a~e~d--------------~~vvf-ni~~-iea~vkdGK~~~V--~----g 295 (635)
T PRK02888 239 NVDTDYDGKYAFSTCYNSEE-GVTLAEMMAAERD--------------WVVVF-NIAR-IEEAVKAGKFKTI--G----G 295 (635)
T ss_pred cceECCCCCEEEEeccCccc-CcceeeeccccCc--------------eEEEE-chHH-HHHhhhCCCEEEE--C----C
Confidence 57889999999887643221 2334445443210 11111 1110 1124567887665 1 2
Q ss_pred ceEEEEeCCC----CCCceEeccCCCCCceeEEEEecCCE-EEEEEecCCeeEEEEEeCCCCce------------eeec
Q 004766 327 YKIIRVDLKE----PNDWFEVIPEAERDVLESATAVNLNQ-MIVSYLSDVKYVLQIRDLKNGSL------------LHQL 389 (732)
Q Consensus 327 ~~l~~~d~~~----~~~~~~l~~~~~~~~l~~~~~~~~~~-l~~~~~~~g~~~l~~~d~~~g~~------------~~~l 389 (732)
.++..+|..+ +......++-. ..-.++.+++|++ +++...- .+.+.++|+++-+. ..++
T Consensus 296 n~V~VID~~t~~~~~~~v~~yIPVG--KsPHGV~vSPDGkylyVankl--S~tVSVIDv~k~k~~~~~~~~~~~~vvaev 371 (635)
T PRK02888 296 SKVPVVDGRKAANAGSALTRYVPVP--KNPHGVNTSPDGKYFIANGKL--SPTVTVIDVRKLDDLFDGKIKPRDAVVAEP 371 (635)
T ss_pred CEEEEEECCccccCCcceEEEEECC--CCccceEECCCCCEEEEeCCC--CCcEEEEEChhhhhhhhccCCccceEEEee
Confidence 4688899877 22234444433 3346788888654 4444322 36788999875331 2233
Q ss_pred ccccceeeEeecccCCcEEEEEEecCCCCceEEEEECCC
Q 004766 390 PIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKT 428 (732)
Q Consensus 390 ~~~~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~ 428 (732)
.+..+.+ ...++.+|+ .|+|.-.-+++..||+.+
T Consensus 372 evGlGPL-HTaFDg~G~----aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 372 ELGLGPL-HTAFDGRGN----AYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred ccCCCcc-eEEECCCCC----EEEeEeecceeEEEehHH
Confidence 3333332 223455554 334444556888888765
|
|
| >KOG2565 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.099 Score=53.15 Aligned_cols=120 Identities=18% Similarity=0.183 Sum_probs=79.7
Q ss_pred CCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHh---------cCcEEEEEcccCCCCCchhHH
Q 004766 460 DGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRH---------LGAVFCIANIRGGGEYGEEWH 530 (732)
Q Consensus 460 dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~---------~G~~v~~~~~rG~g~~g~~~~ 530 (732)
.| .+|+..-+.|...+..++.-.||+.||.+|+-. .|-. +..+|.+ .-|-|++|..+|-| |.
T Consensus 132 eG-L~iHFlhvk~p~~k~~k~v~PlLl~HGwPGsv~--EFyk-fIPlLT~p~~hg~~~d~~FEVI~PSlPGyg-----wS 202 (469)
T KOG2565|consen 132 EG-LKIHFLHVKPPQKKKKKKVKPLLLLHGWPGSVR--EFYK-FIPLLTDPKRHGNESDYAFEVIAPSLPGYG-----WS 202 (469)
T ss_pred cc-eeEEEEEecCCccccCCcccceEEecCCCchHH--HHHh-hhhhhcCccccCCccceeEEEeccCCCCcc-----cC
Confidence 68 999998888876544444445778899999732 2221 2233332 23789999999866 44
Q ss_pred hcccccCCccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEc
Q 004766 531 KGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAH 592 (732)
Q Consensus 531 ~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~ 592 (732)
++ ....+-|..+-..-..+-+...|+ ++..|.|+=+|..++..++..+|+...+.=+.
T Consensus 203 d~-~sk~GFn~~a~ArvmrkLMlRLg~---nkffiqGgDwGSiI~snlasLyPenV~GlHln 260 (469)
T KOG2565|consen 203 DA-PSKTGFNAAATARVMRKLMLRLGY---NKFFIQGGDWGSIIGSNLASLYPENVLGLHLN 260 (469)
T ss_pred cC-CccCCccHHHHHHHHHHHHHHhCc---ceeEeecCchHHHHHHHHHhhcchhhhHhhhc
Confidence 43 233344444333333444556676 68999999999999999999999987766433
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=94.95 E-value=1.9 Score=43.12 Aligned_cols=204 Identities=16% Similarity=0.139 Sum_probs=106.9
Q ss_pred eeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCCcccEEEEEECCCCC-CCCeEEEecCCCCeeEEEeEEecCCcEEEE
Q 004766 181 SSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQ-SEDILCWKDPEHPKYIFSGHVTEDGQYLVM 259 (732)
Q Consensus 181 ~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~-~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~ 259 (732)
..-+|++|++.|+.+... ++|.++.....+ -+ ......+++.....+.|+|-+..|+-
T Consensus 14 tchAwn~drt~iAv~~~~-------------------~evhiy~~~~~~~w~--~~htls~Hd~~vtgvdWap~snrIvt 72 (361)
T KOG1523|consen 14 TCHAWNSDRTQIAVSPNN-------------------HEVHIYSMLGADLWE--PAHTLSEHDKIVTGVDWAPKSNRIVT 72 (361)
T ss_pred eeeeecCCCceEEeccCC-------------------ceEEEEEecCCCCce--eceehhhhCcceeEEeecCCCCceeE
Confidence 678999999999987532 234444432221 11 22223344556678999999999877
Q ss_pred EEecCCcceEEEEEEeC-CCCCCCcccccccCCCCCcEEeee-cccceEEEEEecCCeEEEEeCCCCCCceEEEEeCCCC
Q 004766 260 CIEENCDPVNKVYYCDL-SALPEGLEGFKKRDGLLPFVKLID-GFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEP 337 (732)
Q Consensus 260 ~~~~~~~~~~~l~~~d~-~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~ 337 (732)
.+.+.. -|++.. +++. .+|...|.. ........|+|.++.|++-+. +....++.+ +..
T Consensus 73 cs~drn-----ayVw~~~~~~~-----------WkptlvLlRiNrAAt~V~WsP~enkFAVgSg--ar~isVcy~--E~E 132 (361)
T KOG1523|consen 73 CSHDRN-----AYVWTQPSGGT-----------WKPTLVLLRINRAATCVKWSPKENKFAVGSG--ARLISVCYY--EQE 132 (361)
T ss_pred ccCCCC-----ccccccCCCCe-----------eccceeEEEeccceeeEeecCcCceEEeccC--ccEEEEEEE--ecc
Confidence 665433 344444 3321 222222222 222233359999988876433 222333333 333
Q ss_pred CCce--EeccCCCCCceeEEEEecCCEEEEEEecCCeeEE---EEEeCCCCce----eeeccc---------ccceeeEe
Q 004766 338 NDWF--EVIPEAERDVLESATAVNLNQMIVSYLSDVKYVL---QIRDLKNGSL----LHQLPI---------EIGSVNAI 399 (732)
Q Consensus 338 ~~~~--~l~~~~~~~~l~~~~~~~~~~l~~~~~~~g~~~l---~~~d~~~g~~----~~~l~~---------~~g~v~~~ 399 (732)
.+|- ..+...-...+..+.|.+++-++....-|+.-++ |+-+++.... -.+++| ..|.+..+
T Consensus 133 NdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v 212 (361)
T KOG1523|consen 133 NDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGV 212 (361)
T ss_pred cceehhhhhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeee
Confidence 3331 0111111245677888886666766666765443 3333331100 011221 13456677
Q ss_pred ecccCCcEEEEEEecCCCCceEEEEECCCC
Q 004766 400 SARREDSVVFISFTSFLIPGIVYQCNLKTE 429 (732)
Q Consensus 400 ~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~ 429 (732)
.+++.|+.|.+.. ++..++..|....
T Consensus 213 ~fs~sG~~lawv~----Hds~v~~~da~~p 238 (361)
T KOG1523|consen 213 LFSPSGNRLAWVG----HDSTVSFVDAAGP 238 (361)
T ss_pred EeCCCCCEeeEec----CCCceEEeecCCC
Confidence 8889999887653 3456777675544
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.62 Score=49.95 Aligned_cols=97 Identities=18% Similarity=0.199 Sum_probs=55.9
Q ss_pred CceEEEEeCCCCCCceEeccCCCCCceeEEEEecCCEEEEEEecCCeeEEEEEeCCCCceeeecccc------cc-----
Q 004766 326 KYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIE------IG----- 394 (732)
Q Consensus 326 ~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~~l~~~~~~~g~~~l~~~d~~~g~~~~~l~~~------~g----- 394 (732)
...||+++|+.|.-..++-... ..+..+.+..-+.|+.....+| .+-.||..+...+..|... ++
T Consensus 154 g~evYRlNLEqGrfL~P~~~~~--~~lN~v~in~~hgLla~Gt~~g--~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~ 229 (703)
T KOG2321|consen 154 GSEVYRLNLEQGRFLNPFETDS--GELNVVSINEEHGLLACGTEDG--VVEFWDPRDKSRVGTLDAASSVNSHPGGDAAP 229 (703)
T ss_pred CcceEEEEcccccccccccccc--ccceeeeecCccceEEecccCc--eEEEecchhhhhheeeecccccCCCccccccC
Confidence 3468899998876222221111 2345555555466888877774 5667887644433333321 22
Q ss_pred eeeEeecccCCcEEEEEEecCCCCceEEEEECCCCC
Q 004766 395 SVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 430 (732)
Q Consensus 395 ~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~~ 430 (732)
+|+.+.++-+|=.+.+. +..+.+|.||+.+.+
T Consensus 230 svTal~F~d~gL~~aVG----ts~G~v~iyDLRa~~ 261 (703)
T KOG2321|consen 230 SVTALKFRDDGLHVAVG----TSTGSVLIYDLRASK 261 (703)
T ss_pred cceEEEecCCceeEEee----ccCCcEEEEEcccCC
Confidence 36666666556455544 334789999998763
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.87 E-value=1.4 Score=48.61 Aligned_cols=112 Identities=13% Similarity=0.137 Sum_probs=63.5
Q ss_pred EEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCCCCcEEeeecc---cceEEEEEecCCeEEEEeC
Q 004766 245 IFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGF---DAQYEVIANDDTVFTFLTN 321 (732)
Q Consensus 245 ~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~s~dg~~l~~~s~ 321 (732)
.+++++.|..++++....+. .|.+++.+.++ ..+...+. +....-+.-|-.-+|+.+.
T Consensus 599 lYDm~Vdp~~k~v~t~cQDr-----nirif~i~sgK--------------q~k~FKgs~~~eG~lIKv~lDPSgiY~atS 659 (1080)
T KOG1408|consen 599 LYDMAVDPTSKLVVTVCQDR-----NIRIFDIESGK--------------QVKSFKGSRDHEGDLIKVILDPSGIYLATS 659 (1080)
T ss_pred EEEeeeCCCcceEEEEeccc-----ceEEEeccccc--------------eeeeecccccCCCceEEEEECCCccEEEEe
Confidence 34667778888877665432 26666776643 12222221 1222222223334555544
Q ss_pred CCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecCCEEEEEEecCCeeEEEEEeCC
Q 004766 322 KDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLK 381 (732)
Q Consensus 322 ~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~~l~~~~~~~g~~~l~~~d~~ 381 (732)
-. +-.|..+|.-+++.....+.|. ..+.++.+.+|=+-++....|| =|++|.+.
T Consensus 660 cs--dktl~~~Df~sgEcvA~m~GHs--E~VTG~kF~nDCkHlISvsgDg--CIFvW~lp 713 (1080)
T KOG1408|consen 660 CS--DKTLCFVDFVSGECVAQMTGHS--EAVTGVKFLNDCKHLISVSGDG--CIFVWKLP 713 (1080)
T ss_pred ec--CCceEEEEeccchhhhhhcCcc--hheeeeeecccchhheeecCCc--eEEEEECc
Confidence 22 3358889988887666677776 5688898888633344555554 46666654
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.81 E-value=3.9 Score=42.94 Aligned_cols=246 Identities=10% Similarity=0.053 Sum_probs=125.6
Q ss_pred EEEEeEEECCCCc-EEEEEEeccCCceEEEEEEECCCCcee-----cccccceeeeeEEEEeCCcEEEEEEecCCCCCCC
Q 004766 132 AALIKVSVSEDAK-YLAYALSYSGSDWATIKLMRIEDQIVE-----ADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKD 205 (732)
Q Consensus 132 ~~~~~~~~SPDG~-~la~~~~~~G~e~~~i~v~dl~~g~~~-----~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~ 205 (732)
..+...+|.|... .+..+-+.. .+|-+||+.+.+.- --+.....++++.|+|-+..-+|.+
T Consensus 187 ~Rit~l~fHPt~~~~lva~GdK~----G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ss--------- 253 (498)
T KOG4328|consen 187 RRITSLAFHPTENRKLVAVGDKG----GQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSS--------- 253 (498)
T ss_pred cceEEEEecccCcceEEEEccCC----CcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeee---------
Confidence 4577889999877 455443433 47899999643321 1222333357889999765444442
Q ss_pred CCCCCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCccc
Q 004766 206 MDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEG 285 (732)
Q Consensus 206 ~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~ 285 (732)
.+...|.+.++.+...+ .|+...++..++.+..++.+.+.+++..+-+ ..-++|+.+.....
T Consensus 254 ---------SyDGtiR~~D~~~~i~e--~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G-----~f~~iD~R~~~s~~-- 315 (498)
T KOG4328|consen 254 ---------SYDGTIRLQDFEGNISE--EVLSLDTDNIWFSSLDFSAESRSVLFGDNVG-----NFNVIDLRTDGSEY-- 315 (498)
T ss_pred ---------ccCceeeeeeecchhhH--HHhhcCccceeeeeccccCCCccEEEeeccc-----ceEEEEeecCCccc--
Confidence 12335788888776554 3443323345667888888888888775433 24456665532110
Q ss_pred ccccCCCCCcEEeeecccceEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCC---C-ceEeccCCCCCceeEEEEecC-
Q 004766 286 FKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPN---D-WFEVIPEAERDVLESATAVNL- 360 (732)
Q Consensus 286 ~~~~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~---~-~~~l~~~~~~~~l~~~~~~~~- 360 (732)
.++ .+-.. ......+.|-..+++..+..+ ..+..+|+..-. . .--.+++. ..+.++.+++.
T Consensus 316 -------~~~-~lh~k-KI~sv~~NP~~p~~laT~s~D---~T~kIWD~R~l~~K~sp~lst~~Hr--rsV~sAyFSPs~ 381 (498)
T KOG4328|consen 316 -------ENL-RLHKK-KITSVALNPVCPWFLATASLD---QTAKIWDLRQLRGKASPFLSTLPHR--RSVNSAYFSPSG 381 (498)
T ss_pred -------hhh-hhhhc-ccceeecCCCCchheeecccC---cceeeeehhhhcCCCCcceeccccc--ceeeeeEEcCCC
Confidence 001 11111 111112445433443333222 235566764422 1 12234454 67888888874
Q ss_pred CEEEEEEecCCeeEEEEEeCC----CCceeeecccc--cc-eeeE--eecccCCcEEEEEEecCCCCceEEEEECCCC
Q 004766 361 NQMIVSYLSDVKYVLQIRDLK----NGSLLHQLPIE--IG-SVNA--ISARREDSVVFISFTSFLIPGIVYQCNLKTE 429 (732)
Q Consensus 361 ~~l~~~~~~~g~~~l~~~d~~----~g~~~~~l~~~--~g-~v~~--~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~ 429 (732)
+. +++...+ ..|.+||.. .-..+..|.-. .+ .++- ..+.|+.+.+++ . ..|..+-.+|...+
T Consensus 382 gt-l~TT~~D--~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~v--g--~~~r~IDv~~~~~~ 452 (498)
T KOG4328|consen 382 GT-LLTTCQD--NEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVV--G--RYPRPIDVFDGNGG 452 (498)
T ss_pred Cc-eEeeccC--CceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEE--e--ccCcceeEEcCCCC
Confidence 45 4554444 478888852 11222233211 11 1111 235666554432 2 34555767776555
|
|
| >KOG2100 consensus Dipeptidyl aminopeptidase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.62 E-value=12 Score=43.87 Aligned_cols=63 Identities=17% Similarity=0.188 Sum_probs=43.3
Q ss_pred EEECCCCcEEEEEEeccC----CceEEEEEEECCCCc-eecccccceeeeeEEEEeCCcEEEEEEecC
Q 004766 137 VSVSEDAKYLAYALSYSG----SDWATIKLMRIEDQI-VEADALSWFKFSSIAWTHDSKGFFYSRYPA 199 (732)
Q Consensus 137 ~~~SPDG~~la~~~~~~G----~e~~~i~v~dl~~g~-~~~~~~~~~~~~~~~WspDg~~l~y~~~~~ 199 (732)
...|||.+++++..+..- +-....+++++.+++ .......+..+.-+.|||.+..|+|+...+
T Consensus 102 ~~~s~d~~~~~~~~~~~~~~rhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wsp~~~~l~yv~~~n 169 (755)
T KOG2100|consen 102 DLISPDRKYILLGRNYKKRFRHSYTAKYHLYDLNTGEKLHPPEYEGSKIQYASWSPLGNDLAYVLHNN 169 (755)
T ss_pred cccChhhhhheeccCcccccceeeEEEEEEEEcCCCCcccCcccCCCeeEEEEEcCCCCEEEEEEecc
Confidence 478999999999876321 112366788888887 222222333356799999999999997644
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.62 E-value=7 Score=41.11 Aligned_cols=244 Identities=18% Similarity=0.154 Sum_probs=126.1
Q ss_pred EEEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCce---ecccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCC
Q 004766 132 AALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIV---EADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDA 208 (732)
Q Consensus 132 ~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~---~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~ 208 (732)
..++.+.|||-..--.|+++.+| +|+..|++++.. +.....+..+++..++.+...+++...-
T Consensus 235 ~~Vs~l~F~P~n~s~i~ssSyDG----tiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~---------- 300 (498)
T KOG4328|consen 235 GPVSGLKFSPANTSQIYSSSYDG----TIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNV---------- 300 (498)
T ss_pred ccccceEecCCChhheeeeccCc----eeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecc----------
Confidence 34788999998877777776665 799999998752 2221233446788888888888876321
Q ss_pred CCcccCCcccEEEEEECCCCCCC--CeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccc
Q 004766 209 GTETDSNLYHEFYYHFLGTKQSE--DILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGF 286 (732)
Q Consensus 209 ~~~~~~~~~~~v~~~~lgt~~~~--~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~ 286 (732)
. .+-++++.++..+ ...+. ..-+.++++.|-..+++.+++-.. + ..+||+.....+
T Consensus 301 -------G--~f~~iD~R~~~s~~~~~~lh-----~kKI~sv~~NP~~p~~laT~s~D~--T--~kIWD~R~l~~K---- 358 (498)
T KOG4328|consen 301 -------G--NFNVIDLRTDGSEYENLRLH-----KKKITSVALNPVCPWFLATASLDQ--T--AKIWDLRQLRGK---- 358 (498)
T ss_pred -------c--ceEEEEeecCCccchhhhhh-----hcccceeecCCCCchheeecccCc--c--eeeeehhhhcCC----
Confidence 1 2334444444332 22221 123468889998888877664332 2 455676552110
Q ss_pred cccCCCCCcEEeeeccc-ceEEEEEecCCeEEEEeCCCCCCceEEEEeCC---CCCCceEeccCCCC--CceeE--EEEe
Q 004766 287 KKRDGLLPFVKLIDGFD-AQYEVIANDDTVFTFLTNKDAPKYKIIRVDLK---EPNDWFEVIPEAER--DVLES--ATAV 358 (732)
Q Consensus 287 ~~~~~~~~~~~l~~~~~-~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~---~~~~~~~l~~~~~~--~~l~~--~~~~ 358 (732)
..|....+.... ....+|||+|..|+ .+..+ ..|-++|.. ...+....++|... +.+.- ..|.
T Consensus 359 -----~sp~lst~~HrrsV~sAyFSPs~gtl~-TT~~D---~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~ 429 (498)
T KOG4328|consen 359 -----ASPFLSTLPHRRSVNSAYFSPSGGTLL-TTCQD---NEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWD 429 (498)
T ss_pred -----CCcceecccccceeeeeEEcCCCCceE-eeccC---CceEEeecccccccCCccceeeccCcccccccchhheeC
Confidence 112222222211 12236999888844 33332 235555542 11123344555421 23332 3566
Q ss_pred cCCEEEEEEecCCeeEEEEEeCCCCceeeecccc-cceeeE-eecccCCcEEEEEEecCCCCceEEEEE
Q 004766 359 NLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIE-IGSVNA-ISARREDSVVFISFTSFLIPGIVYQCN 425 (732)
Q Consensus 359 ~~~~l~~~~~~~g~~~l~~~d~~~g~~~~~l~~~-~g~v~~-~~~s~d~~~l~~~~ss~~~p~~~y~~d 425 (732)
++..+++..+-- ..|-++|...|+.+.++-.| ..+|.. ..+.|-+..++ +..+.-+.+|++.
T Consensus 430 P~~~li~vg~~~--r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~---aG~~s~Gki~vft 493 (498)
T KOG4328|consen 430 PDYNLIVVGRYP--RPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLA---AGGNSSGKIYVFT 493 (498)
T ss_pred CCccEEEEeccC--cceeEEcCCCCEEeeeccCccccccccceeeccccccee---ccCCccceEEEEe
Confidence 644455554433 35888887645434455444 222222 23445444332 2333445666553
|
|
| >PF11187 DUF2974: Protein of unknown function (DUF2974); InterPro: IPR024499 This family of proteins has no known function | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.069 Score=52.15 Aligned_cols=72 Identities=19% Similarity=0.221 Sum_probs=44.7
Q ss_pred ccCCCCCchhHHhcccccCCccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCC----CeeeEEEE
Q 004766 519 IRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRP----DLFGCALA 591 (732)
Q Consensus 519 ~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p----~~f~a~v~ 591 (732)
+||.-.....|.+........ ...-...|++|+.+.--..+++|.+.|||-||.||..++...+ +++..+++
T Consensus 43 FRGTd~t~~~W~ed~~~~~~~-~~~~q~~A~~yl~~~~~~~~~~i~v~GHSkGGnLA~yaa~~~~~~~~~rI~~vy~ 118 (224)
T PF11187_consen 43 FRGTDDTLVDWKEDFNMSFQD-ETPQQKSALAYLKKIAKKYPGKIYVTGHSKGGNLAQYAAANCDDEIQDRISKVYS 118 (224)
T ss_pred EECCCCchhhHHHHHHhhcCC-CCHHHHHHHHHHHHHHHhCCCCEEEEEechhhHHHHHHHHHccHHHhhheeEEEE
Confidence 577655556677665443321 2233456667766542223457999999999999998888733 34555553
|
|
| >KOG4388 consensus Hormone-sensitive lipase HSL [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.38 E-value=0.11 Score=55.77 Aligned_cols=90 Identities=19% Similarity=0.180 Sum_probs=66.3
Q ss_pred CCccEEEEEcCCCCc-cCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCccHHHHHHHHHHHHHHc--
Q 004766 479 GSHPCLLYGYGGFNI-SVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISA-- 555 (732)
Q Consensus 479 ~~~P~vv~~hG~~~~-~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~-- 555 (732)
...-+|+++|||.-. ....+..+-..+|....|.-++.+||--..| ..-+...+.+.-|..|++.+
T Consensus 394 ~S~sli~HcHGGGfVAqsSkSHE~YLr~Wa~aL~cPiiSVdYSLAPE-----------aPFPRaleEv~fAYcW~inn~a 462 (880)
T KOG4388|consen 394 RSRSLIVHCHGGGFVAQSSKSHEPYLRSWAQALGCPIISVDYSLAPE-----------APFPRALEEVFFAYCWAINNCA 462 (880)
T ss_pred CCceEEEEecCCceeeeccccccHHHHHHHHHhCCCeEEeeeccCCC-----------CCCCcHHHHHHHHHHHHhcCHH
Confidence 345699999998433 3344555555677777899999999876543 44566788889999999876
Q ss_pred --CCCCCCcEEEEecChhHHHHHHHHh
Q 004766 556 --GYTQSRKLCIEGGSNGGLLVGACIN 580 (732)
Q Consensus 556 --~~~d~~~i~i~G~S~GG~l~~~~~~ 580 (732)
|.+ .+||++.|-|+||.|..-++.
T Consensus 463 llG~T-gEriv~aGDSAGgNL~~~VaL 488 (880)
T KOG4388|consen 463 LLGST-GERIVLAGDSAGGNLCFTVAL 488 (880)
T ss_pred HhCcc-cceEEEeccCCCcceeehhHH
Confidence 554 589999999999987654433
|
|
| >PLN03016 sinapoylglucose-malate O-sinapoyltransferase | Back alignment and domain information |
|---|
Probab=94.38 E-value=0.12 Score=55.87 Aligned_cols=140 Identities=14% Similarity=0.074 Sum_probs=80.5
Q ss_pred EEEEccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCC--------CCc-------------ChhHHHHHHhcCc
Q 004766 454 VFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVT--------PSF-------------SVSRTILMRHLGA 512 (732)
Q Consensus 454 ~~~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~--------~~~-------------~~~~~~~l~~~G~ 512 (732)
+.+....+ ..+..|++...+ .....|+||++-||||.+.. |.- ...-..|.. =.
T Consensus 42 ~~v~~~~~-~~lfy~f~es~~--~~~~~P~~lWlnGGPG~SS~~g~~~e~GP~~~~~~~~~~~~~~l~~n~~sW~~--~a 116 (433)
T PLN03016 42 IGIGEDEN-VQFFYYFIKSEN--NPKEDPLLIWLNGGPGCSCLGGIIFENGPVGLKFEVFNGSAPSLFSTTYSWTK--MA 116 (433)
T ss_pred EEecCCCC-eEEEEEEEecCC--CcccCCEEEEEcCCCcHHHHHHHHHhcCCceeeccccCCCCCceeeCCCchhh--cC
Confidence 33333345 667777765543 24578999999999987642 110 000123333 35
Q ss_pred EEEEEcccCCCCCchhHHhcccccCCccHHHHHHHHHHH-HHHcCCCCCCcEEEEecChhHHHHHHHHhh----C-----
Q 004766 513 VFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEY-LISAGYTQSRKLCIEGGSNGGLLVGACINQ----R----- 582 (732)
Q Consensus 513 ~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~-l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~----~----- 582 (732)
.++.+|.+-|.||...-.... ........+|+..++.. +..........+.|.|.|+||..+..++.. +
T Consensus 117 nllfiDqPvGtGfSy~~~~~~-~~~d~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYaG~yvP~la~~i~~~n~~~~~ 195 (433)
T PLN03016 117 NIIFLDQPVGSGFSYSKTPID-KTGDISEVKRTHEFLQKWLSRHPQYFSNPLYVVGDSYSGMIVPALVQEISQGNYICCE 195 (433)
T ss_pred cEEEecCCCCCCccCCCCCCC-ccCCHHHHHHHHHHHHHHHHhChhhcCCCEEEEccCccceehHHHHHHHHhhcccccC
Confidence 677788777666653211111 11111233566666554 444333345679999999999866655442 2
Q ss_pred -CCeeeEEEEcCCccccc
Q 004766 583 -PDLFGCALAHVGVMDML 599 (732)
Q Consensus 583 -p~~f~a~v~~~p~~d~~ 599 (732)
+=-+++++++.|++|..
T Consensus 196 ~~inLkGi~iGNg~t~~~ 213 (433)
T PLN03016 196 PPINLQGYMLGNPVTYMD 213 (433)
T ss_pred CcccceeeEecCCCcCch
Confidence 12578999999988764
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.34 E-value=0.6 Score=51.84 Aligned_cols=118 Identities=8% Similarity=-0.053 Sum_probs=75.5
Q ss_pred EEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCc--eecccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCC
Q 004766 133 ALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQI--VEADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGT 210 (732)
Q Consensus 133 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~--~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~ 210 (732)
++..++|||--....++...+| .|.+||+.--. .+..+....-...+.|+|++.+|+-.
T Consensus 178 SiRDV~fsp~~~~~F~s~~dsG----~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATG--------------- 238 (839)
T KOG0269|consen 178 SIRDVKFSPGYGNKFASIHDSG----YLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATG--------------- 238 (839)
T ss_pred hhhceeeccCCCceEEEecCCc----eEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeec---------------
Confidence 4778999996655555555444 78999996433 12223333234678999988777754
Q ss_pred cccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCC
Q 004766 211 ETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSA 278 (732)
Q Consensus 211 ~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~ 278 (732)
+|...|.+|+.+++........+.. .-...+.|-|+..+.+.+.+-.. ...|+++|+..
T Consensus 239 ----GRDK~vkiWd~t~~~~~~~~tInTi---apv~rVkWRP~~~~hLAtcsmv~--dtsV~VWDvrR 297 (839)
T KOG0269|consen 239 ----GRDKMVKIWDMTDSRAKPKHTINTI---APVGRVKWRPARSYHLATCSMVV--DTSVHVWDVRR 297 (839)
T ss_pred ----CCCccEEEEeccCCCccceeEEeec---ceeeeeeeccCccchhhhhhccc--cceEEEEeecc
Confidence 4556789999987665543333221 12346889999887655443333 46789999875
|
|
| >PLN02209 serine carboxypeptidase | Back alignment and domain information |
|---|
Probab=94.28 E-value=0.21 Score=54.10 Aligned_cols=139 Identities=9% Similarity=0.097 Sum_probs=80.0
Q ss_pred EEEEccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcCh---------------------hHHHHHHhcCc
Q 004766 454 VFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSV---------------------SRTILMRHLGA 512 (732)
Q Consensus 454 ~~~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~---------------------~~~~~l~~~G~ 512 (732)
+.+....| ..+..+++.... .....|+|+++-||||.+....+.. .-..|.. =.
T Consensus 44 ~~v~~~~~-~~lf~~f~es~~--~~~~~Pl~lWlnGGPG~SS~~g~f~e~GP~~~~~~~~~~~~~~l~~n~~sW~~--~a 118 (437)
T PLN02209 44 IGIGEEEN-VQFFYYFIKSDK--NPQEDPLIIWLNGGPGCSCLSGLFFENGPLALKNKVYNGSVPSLVSTTYSWTK--TA 118 (437)
T ss_pred EEecCCCC-eEEEEEEEecCC--CCCCCCEEEEECCCCcHHHhhhHHHhcCCceeccCCCCCCcccceeCCCchhh--cC
Confidence 34433345 567776665443 2356899999999998764321100 0012333 34
Q ss_pred EEEEEcccCCCCCchhHHhcccccCCccHHHHHHHHHHHHH-HcCCCCCCcEEEEecChhHHHHHHHHh----hC-----
Q 004766 513 VFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLI-SAGYTQSRKLCIEGGSNGGLLVGACIN----QR----- 582 (732)
Q Consensus 513 ~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~-~~~~~d~~~i~i~G~S~GG~l~~~~~~----~~----- 582 (732)
.++.+|.+-|.||...-..... ..-..+.+|+..++.... ....-....+.|+|.|+||..+-.++. .+
T Consensus 119 nllfiDqPvGtGfSy~~~~~~~-~~~~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYaG~yvP~~a~~i~~~~~~~~~ 197 (437)
T PLN02209 119 NIIFLDQPVGSGFSYSKTPIER-TSDTSEVKKIHEFLQKWLIKHPQFLSNPFYVVGDSYSGMIVPALVHEISKGNYICCN 197 (437)
T ss_pred cEEEecCCCCCCccCCCCCCCc-cCCHHHHHHHHHHHHHHHHhCccccCCCEEEEecCcCceehHHHHHHHHhhcccccC
Confidence 6777787777666532111111 111233467776666443 333334467999999999986555543 22
Q ss_pred -CCeeeEEEEcCCcccc
Q 004766 583 -PDLFGCALAHVGVMDM 598 (732)
Q Consensus 583 -p~~f~a~v~~~p~~d~ 598 (732)
+=-+++++++.|++|.
T Consensus 198 ~~inl~Gi~igng~td~ 214 (437)
T PLN02209 198 PPINLQGYVLGNPITHI 214 (437)
T ss_pred CceeeeeEEecCcccCh
Confidence 1257899999998875
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.25 E-value=2.6 Score=43.03 Aligned_cols=118 Identities=17% Similarity=0.213 Sum_probs=72.9
Q ss_pred CEEEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCC------ceec--ccccceeeeeEEEEeCCcEEEEEEecCCCC
Q 004766 131 TAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQ------IVEA--DALSWFKFSSIAWTHDSKGFFYSRYPAPKE 202 (732)
Q Consensus 131 ~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g------~~~~--~~~~~~~~~~~~WspDg~~l~y~~~~~~~~ 202 (732)
+.-+..+.||.+|++|| .|.+....+||.++.- +++. ......++..++|. -+.+++|+.
T Consensus 56 ~GCiNAlqFS~N~~~L~-----SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~-~~N~~~~SG------ 123 (609)
T KOG4227|consen 56 TGCINALQFSHNDRFLA-----SGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFD-LENRFLYSG------ 123 (609)
T ss_pred ccccceeeeccCCeEEe-----ecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEc-cCCeeEecC------
Confidence 44578899999999998 4455578889987621 1111 11222234567776 345566652
Q ss_pred CCCCCCCCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCC
Q 004766 203 GKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSAL 279 (732)
Q Consensus 203 ~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~ 279 (732)
.+..+|.+|++.+.+. +-|+.+.++.+-++.+..+|-...++.++. ...+.++|....
T Consensus 124 ------------~~~~~VI~HDiEt~qs--i~V~~~~~~~~~VY~m~~~P~DN~~~~~t~-----~~~V~~~D~Rd~ 181 (609)
T KOG4227|consen 124 ------------ERWGTVIKHDIETKQS--IYVANENNNRGDVYHMDQHPTDNTLIVVTR-----AKLVSFIDNRDR 181 (609)
T ss_pred ------------CCcceeEeeeccccee--eeeecccCcccceeecccCCCCceEEEEec-----CceEEEEeccCC
Confidence 3445799999998754 355655555555667788887555544432 234667776553
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=94.20 E-value=3.9 Score=48.25 Aligned_cols=60 Identities=15% Similarity=0.106 Sum_probs=38.6
Q ss_pred EEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecccccceeeeeEEEEeCCcEEEEEEe
Q 004766 133 ALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWFKFSSIAWTHDSKGFFYSRY 197 (732)
Q Consensus 133 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~~~~~~~~~~WspDg~~l~y~~~ 197 (732)
.+-++.+--|+.-|.++.. . .+|.+.|.++....-...-...+...+||||++.+++++.
T Consensus 70 ~i~s~~fl~d~~~i~v~~~-~----G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~ 129 (1265)
T KOG1920|consen 70 EIVSVQFLADTNSICVITA-L----GDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITG 129 (1265)
T ss_pred ceEEEEEecccceEEEEec-C----CcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeC
Confidence 4566777777777766642 2 2567778877663211111112478899999999998875
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.19 E-value=6.7 Score=39.17 Aligned_cols=203 Identities=10% Similarity=0.037 Sum_probs=99.7
Q ss_pred EEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecccccce-eeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCc
Q 004766 133 ALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWF-KFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTE 211 (732)
Q Consensus 133 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~~~~-~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~ 211 (732)
.++++.|+||-+.|.-+.+ +..+|..++.++.-.......+. +.-.++|.-+|+. +.+.
T Consensus 87 nvS~LTynp~~rtLFav~n----~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~f-vi~d--------------- 146 (316)
T COG3204 87 NVSSLTYNPDTRTLFAVTN----KPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQF-VIVD--------------- 146 (316)
T ss_pred cccceeeCCCcceEEEecC----CCceEEEEecCCceEEEecccccCChhHeEEecCCEE-EEEe---------------
Confidence 3789999999987754432 22467777765432222222111 2356788877653 3331
Q ss_pred ccCCcccEEEEEECCCCCC----CC-eEEEecC-C-CCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcc
Q 004766 212 TDSNLYHEFYYHFLGTKQS----ED-ILCWKDP-E-HPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLE 284 (732)
Q Consensus 212 ~~~~~~~~v~~~~lgt~~~----~~-~~v~~~~-~-~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~ 284 (732)
.+.++++.+.+..+.. .. .+-.+.. . +.+ +.+++|+|..+.+++...+.. ..||.+.... ..+.
T Consensus 147 ---ER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~G-fEGlA~d~~~~~l~~aKEr~P---~~I~~~~~~~--~~l~ 217 (316)
T COG3204 147 ---ERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKG-FEGLAWDPVDHRLFVAKERNP---IGIFEVTQSP--SSLS 217 (316)
T ss_pred ---hhcceEEEEEEcCCccEEeccceEEeccccCCCCcC-ceeeecCCCCceEEEEEccCC---cEEEEEecCC--cccc
Confidence 2445566666543311 01 1111111 1 233 358999999999988876554 5677776322 1110
Q ss_pred cccccCCCCCcEEeeecccceEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCC-------CceeEEEE
Q 004766 285 GFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAER-------DVLESATA 357 (732)
Q Consensus 285 ~~~~~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~-------~~l~~~~~ 357 (732)
. +....+...+.+.- .+.+-..+.+..++|++++++.. .|..+|+++.- ...+.-.... ...+++..
T Consensus 218 ~-~~~~~~~~~~~~f~-~DvSgl~~~~~~~~LLVLS~ESr---~l~Evd~~G~~-~~~lsL~~g~~gL~~dipqaEGiam 291 (316)
T COG3204 218 V-HASLDPTADRDLFV-LDVSGLEFNAITNSLLVLSDESR---RLLEVDLSGEV-IELLSLTKGNHGLSSDIPQAEGIAM 291 (316)
T ss_pred c-ccccCcccccceEe-eccccceecCCCCcEEEEecCCc---eEEEEecCCCe-eeeEEeccCCCCCcccCCCcceeEE
Confidence 0 00000000001111 01111124555678888887643 57777766542 1211111111 12356676
Q ss_pred ecCCEEEEEEecC
Q 004766 358 VNLNQMIVSYLSD 370 (732)
Q Consensus 358 ~~~~~l~~~~~~~ 370 (732)
.+++.||+.+..+
T Consensus 292 Dd~g~lYIvSEPn 304 (316)
T COG3204 292 DDDGNLYIVSEPN 304 (316)
T ss_pred CCCCCEEEEecCC
Confidence 6656677776665
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=94.14 E-value=7.5 Score=46.69 Aligned_cols=108 Identities=11% Similarity=0.161 Sum_probs=66.2
Q ss_pred eEEECCCCcEEEEEEeccCC-ceEEEEEEECCCCcee--cccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcc
Q 004766 136 KVSVSEDAKYLAYALSYSGS-DWATIKLMRIEDQIVE--ADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTET 212 (732)
Q Consensus 136 ~~~~SPDG~~la~~~~~~G~-e~~~i~v~dl~~g~~~--~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~ 212 (732)
.++|-.||++.|.+.-.... ....|+||+-+ |+.. .+...+. ...++|.|.|..|+-+....
T Consensus 214 ~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gL-e~~l~WrPsG~lIA~~q~~~------------- 278 (928)
T PF04762_consen 214 RISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGL-EGALSWRPSGNLIASSQRLP------------- 278 (928)
T ss_pred EEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCc-cCCccCCCCCCEEEEEEEcC-------------
Confidence 56799999999988752222 36799999977 5532 2223332 26799999999998876421
Q ss_pred cCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEe
Q 004766 213 DSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIE 262 (732)
Q Consensus 213 ~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~ 262 (732)
.+ ..|..+...+ ...............-...+.|++|+.-|++...
T Consensus 279 --~~-~~VvFfErNG-LrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~ 324 (928)
T PF04762_consen 279 --DR-HDVVFFERNG-LRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLE 324 (928)
T ss_pred --CC-cEEEEEecCC-cEeeeEecCCCCCCceeeEEEECCCCCEEEEEec
Confidence 12 3444444332 1222222222112233468999999999998763
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=94.13 E-value=2.3 Score=42.50 Aligned_cols=212 Identities=12% Similarity=0.074 Sum_probs=111.2
Q ss_pred EEEEeEEECCCCcEEEEEEeccCCceEEEEEEEC-CCCceec----ccccceeeeeEEEEeCCcEEEEEEecCCCCCCCC
Q 004766 132 AALIKVSVSEDAKYLAYALSYSGSDWATIKLMRI-EDQIVEA----DALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDM 206 (732)
Q Consensus 132 ~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl-~~g~~~~----~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~ 206 (732)
..+.++.|+|-..+|.-.... ..-|||.. ++|+-.+ ..+.++ ...+.|||.+..|+..+.
T Consensus 56 ~~vtgvdWap~snrIvtcs~d-----rnayVw~~~~~~~WkptlvLlRiNrA-At~V~WsP~enkFAVgSg--------- 120 (361)
T KOG1523|consen 56 KIVTGVDWAPKSNRIVTCSHD-----RNAYVWTQPSGGTWKPTLVLLRINRA-ATCVKWSPKENKFAVGSG--------- 120 (361)
T ss_pred cceeEEeecCCCCceeEccCC-----CCccccccCCCCeeccceeEEEeccc-eeeEeecCcCceEEeccC---------
Confidence 456789999999998755433 34578877 5555221 112222 378999999998887541
Q ss_pred CCCCcccCCcccEEEEEECCCCCCCCeEEEe--cCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcc
Q 004766 207 DAGTETDSNLYHEFYYHFLGTKQSEDILCWK--DPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLE 284 (732)
Q Consensus 207 ~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~--~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~ 284 (732)
.+--.|+++.-. ++=-|-. ......-+.++.|.|++-.|+..+-+..-+....|+-+++..+...
T Consensus 121 --------ar~isVcy~E~E----NdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~- 187 (361)
T KOG1523|consen 121 --------ARLISVCYYEQE----NDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPT- 187 (361)
T ss_pred --------ccEEEEEEEecc----cceehhhhhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCC-
Confidence 122233333211 1100000 0000123457889998888776554332223446676776644210
Q ss_pred cccccCCCCCcEEeeeccc--ceE---EEEEecCCeEEEEeCCCCCCceEEEEeCCCCCC-ceEeccCCCCCceeEEEEe
Q 004766 285 GFKKRDGLLPFVKLIDGFD--AQY---EVIANDDTVFTFLTNKDAPKYKIIRVDLKEPND-WFEVIPEAERDVLESATAV 358 (732)
Q Consensus 285 ~~~~~~~~~~~~~l~~~~~--~~~---~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~-~~~l~~~~~~~~l~~~~~~ 358 (732)
.+ +...|+-.|...+. ..+ ..|+|+|.+|.++.... .+...|..++.+ ...+... ...+.++.|.
T Consensus 188 -pW--gsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds----~v~~~da~~p~~~v~~~~~~--~lP~ls~~~i 258 (361)
T KOG1523|consen 188 -PW--GSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDS----TVSFVDAAGPSERVQSVATA--QLPLLSVSWI 258 (361)
T ss_pred -CC--ccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCC----ceEEeecCCCchhccchhhc--cCCceeeEee
Confidence 00 11233333433331 122 14899999999887643 467777766641 2222111 2445566666
Q ss_pred cCCEEEEEEecCCeeEEEEEeCC
Q 004766 359 NLNQMIVSYLSDVKYVLQIRDLK 381 (732)
Q Consensus 359 ~~~~l~~~~~~~g~~~l~~~d~~ 381 (732)
. ..-++....+-.+.++..+-+
T Consensus 259 s-e~~vv~ag~~c~P~lf~~~~~ 280 (361)
T KOG1523|consen 259 S-ENSVVAAGYDCGPVLFVTDEE 280 (361)
T ss_pred c-CCceeecCCCCCceEEEeccc
Confidence 5 333444445544677776644
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.13 E-value=6.8 Score=39.01 Aligned_cols=52 Identities=15% Similarity=0.116 Sum_probs=36.1
Q ss_pred EEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecccccceeeeeEEEEeCCc
Q 004766 134 LIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWFKFSSIAWTHDSK 190 (732)
Q Consensus 134 ~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~~~~~~~~~~WspDg~ 190 (732)
+-...||-||.+++.. +. ..++.+|||++|+..........+....|-+...
T Consensus 75 vL~v~WsddgskVf~g-~~----Dk~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~ 126 (347)
T KOG0647|consen 75 VLDVCWSDDGSKVFSG-GC----DKQAKLWDLASGQVSQVAAHDAPVKTCHWVPGMN 126 (347)
T ss_pred eEEEEEccCCceEEee-cc----CCceEEEEccCCCeeeeeecccceeEEEEecCCC
Confidence 4467899999766533 22 2478999999998665555444456778887654
|
|
| >PRK13613 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=93.95 E-value=5.7 Score=44.98 Aligned_cols=173 Identities=13% Similarity=0.134 Sum_probs=89.7
Q ss_pred EEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCce----ecccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCC
Q 004766 133 ALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIV----EADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDA 208 (732)
Q Consensus 133 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~----~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~ 208 (732)
.+..+..|+||+.+|++.. +...+++-.+..+.. ......+.....++|.++| .+..+ ...
T Consensus 364 ~~~s~avS~~g~~~A~v~~----~~~~l~vg~~~~~~~~~~~~~~~~~~~~Lt~PS~d~~g-~vWtv-d~~--------- 428 (599)
T PRK13613 364 PLRRVAVSRDESRAAGISA----DGDSVYVGSLTPGASIGVHSWGVTADGRLTSPSWDGRG-DLWVV-DRD--------- 428 (599)
T ss_pred CccceEEcCCCceEEEEcC----CCcEEEEeccCCCCccccccceeeccCcccCCcCcCCC-CEEEe-cCC---------
Confidence 4668899999999999842 224788877755443 1122222235789999888 56544 111
Q ss_pred CCcccCCcccEEEEEECCCCCCCCeEEEecCCCCe-eEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCccccc
Q 004766 209 GTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPK-YIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFK 287 (732)
Q Consensus 209 ~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~-~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~ 287 (732)
.. ..++.+..-+++... .| +.+.-.+ -+..+..|+||-++++...... ...|++.-+.....+...+
T Consensus 429 -----~~-~~~vl~v~~~~G~~~--~V-~~~~l~g~~I~~lrvSrDG~RvAvv~~~~g--~~~v~va~V~R~~~G~~~l- 496 (599)
T PRK13613 429 -----PA-DPRLLWLLQGDGEPV--EV-RTPELDGHRVVAVRVARDGVRVALIVEKDG--RRSLQIGRIVRDAKAVVSV- 496 (599)
T ss_pred -----CC-CceEEEEEcCCCcEE--Ee-eccccCCCEeEEEEECCCccEEEEEEecCC--CcEEEEEEEEeCCCCcEEe-
Confidence 11 123332222333221 11 1111112 4678999999999999876544 3445554432211110000
Q ss_pred ccCCCCCcEEeeecccc-eEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCC
Q 004766 288 KRDGLLPFVKLIDGFDA-QYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPN 338 (732)
Q Consensus 288 ~~~~~~~~~~l~~~~~~-~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~ 338 (732)
...+.+...... .-..|..+ ..|+++......+..++.+++++..
T Consensus 497 -----~~~~~l~~~l~~v~~~~W~~~-~sL~Vlg~~~~~~~~v~~v~vdG~~ 542 (599)
T PRK13613 497 -----EEFRSLAPELEDVTDMSWAGD-SQLVVLGREEGGVQQARYVQVDGST 542 (599)
T ss_pred -----eccEEeccCCCccceeEEcCC-CEEEEEeccCCCCcceEEEecCCcC
Confidence 011222222111 11247654 5677655333335678999988765
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=93.83 E-value=7.6 Score=38.49 Aligned_cols=53 Identities=23% Similarity=0.393 Sum_probs=34.3
Q ss_pred EEECCCCcEEEEEEeccCCceEEEEEEECCCCc-------ee-cccccceeeeeEEEEeCCcEEEEEEe
Q 004766 137 VSVSEDAKYLAYALSYSGSDWATIKLMRIEDQI-------VE-ADALSWFKFSSIAWTHDSKGFFYSRY 197 (732)
Q Consensus 137 ~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~-------~~-~~~~~~~~~~~~~WspDg~~l~y~~~ 197 (732)
++.|+||+.||.+.+ ..|.|+-..... .+ .+... ...-++||||+..|+|+..
T Consensus 3 ~~~~~~Gk~lAi~qd------~~iEiRsa~Ddf~si~~kcqVpkD~~P--QWRkl~WSpD~tlLa~a~S 63 (282)
T PF15492_consen 3 LALSSDGKLLAILQD------QCIEIRSAKDDFSSIIGKCQVPKDPNP--QWRKLAWSPDCTLLAYAES 63 (282)
T ss_pred eeecCCCcEEEEEec------cEEEEEeccCCchheeEEEecCCCCCc--hheEEEECCCCcEEEEEcC
Confidence 568999999999864 345555444322 11 12211 2367999999999999853
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.65 E-value=16 Score=41.67 Aligned_cols=59 Identities=20% Similarity=0.193 Sum_probs=42.6
Q ss_pred EEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCce--ecccccceeeeeEEEEeCCcEEEEEEec
Q 004766 133 ALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIV--EADALSWFKFSSIAWTHDSKGFFYSRYP 198 (732)
Q Consensus 133 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~--~~~~~~~~~~~~~~WspDg~~l~y~~~~ 198 (732)
.+...+||+||.+|. .+|.| ..+-+|.++|++. ||- +. ...-++.||||+.....+..|
T Consensus 253 ~V~~L~fS~~G~~Ll----SGG~E-~VLv~Wq~~T~~kqfLPR-Lg-s~I~~i~vS~ds~~~sl~~~D 313 (792)
T KOG1963|consen 253 EVNSLSFSSDGAYLL----SGGRE-GVLVLWQLETGKKQFLPR-LG-SPILHIVVSPDSDLYSLVLED 313 (792)
T ss_pred ccceeEEecCCceEe----ecccc-eEEEEEeecCCCcccccc-cC-CeeEEEEEcCCCCeEEEEecC
Confidence 578899999998875 14554 7899999998872 332 21 124789999999987777544
|
|
| >PF12048 DUF3530: Protein of unknown function (DUF3530); InterPro: IPR022529 This family of proteins is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=93.57 E-value=4.4 Score=41.93 Aligned_cols=135 Identities=8% Similarity=0.047 Sum_probs=82.4
Q ss_pred EEEEEEccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccC--CC------
Q 004766 452 HQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRG--GG------ 523 (732)
Q Consensus 452 ~~~~~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG--~g------ 523 (732)
+.++... ++ .++.+ |++|... ..+.-+||++||-......+........-|.+.||..+....+. ..
T Consensus 63 e~~~L~~-~~-~~fla-L~~~~~~--~~~~G~vIilp~~g~~~d~p~~i~~LR~~L~~~GW~Tlsit~P~~~~~~~p~~~ 137 (310)
T PF12048_consen 63 EVQWLQA-GE-ERFLA-LWRPANS--AKPQGAVIILPDWGEHPDWPGLIAPLRRELPDHGWATLSITLPDPAPPASPNRA 137 (310)
T ss_pred hcEEeec-CC-EEEEE-EEecccC--CCCceEEEEecCCCCCCCcHhHHHHHHHHhhhcCceEEEecCCCcccccCCccC
Confidence 4445554 44 55544 4555442 34566999999977665555554445555677999999988775 10
Q ss_pred -------CCchhHHh--------------cccccCCccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhC
Q 004766 524 -------EYGEEWHK--------------GGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQR 582 (732)
Q Consensus 524 -------~~g~~~~~--------------~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~ 582 (732)
.-+..-.. ..........+.-+.+++.++.+++. .+|+++|++.|+++++.++...
T Consensus 138 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ari~Aa~~~~~~~~~---~~ivlIg~G~gA~~~~~~la~~ 214 (310)
T PF12048_consen 138 TEAEEVPSAGDQQLSQPSDEPSPASAQEAEAREAYEERLFARIEAAIAFAQQQGG---KNIVLIGHGTGAGWAARYLAEK 214 (310)
T ss_pred CCCCCCCCCCCCCcCCCCCCCccccccHhHHhHHHHHHHHHHHHHHHHHHHhcCC---ceEEEEEeChhHHHHHHHHhcC
Confidence 00000000 00011112345566677788877764 3599999999999999999986
Q ss_pred CC-eeeEEEEcCC
Q 004766 583 PD-LFGCALAHVG 594 (732)
Q Consensus 583 p~-~f~a~v~~~p 594 (732)
+. ...+.|+..|
T Consensus 215 ~~~~~daLV~I~a 227 (310)
T PF12048_consen 215 PPPMPDALVLINA 227 (310)
T ss_pred CCcccCeEEEEeC
Confidence 54 3567776555
|
This protein is found in bacteria. Proteins in this family are typically between 272 to 336 amino acids in length. These proteins are distantly related to alpa/beta hydrolases so they may act as enzymes. |
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.56 E-value=6.5 Score=37.97 Aligned_cols=65 Identities=15% Similarity=0.049 Sum_probs=35.4
Q ss_pred CceeEEEEecC----CEEEEEEecCCeeEEEEEeCCCCceeeecccc-cceeeEeecccCCcEEEEEEec
Q 004766 350 DVLESATAVNL----NQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIE-IGSVNAISARREDSVVFISFTS 414 (732)
Q Consensus 350 ~~l~~~~~~~~----~~l~~~~~~~g~~~l~~~d~~~g~~~~~l~~~-~g~v~~~~~s~d~~~l~~~~ss 414 (732)
..+.+++|.+. ..-+++...++.--|+.-+.+.+....++--+ +..+..+++|..|+.|.++..+
T Consensus 208 dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~Gd 277 (299)
T KOG1332|consen 208 DWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGD 277 (299)
T ss_pred hhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCC
Confidence 45677777763 34566777776444444443222221111111 3445677888889877665543
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=93.33 E-value=8.4 Score=38.16 Aligned_cols=113 Identities=16% Similarity=0.156 Sum_probs=72.6
Q ss_pred EEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCce-ec-----cccc-ceeeeeEEEEe--CCcEEEEEEecCCCCC
Q 004766 133 ALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIV-EA-----DALS-WFKFSSIAWTH--DSKGFFYSRYPAPKEG 203 (732)
Q Consensus 133 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~-~~-----~~~~-~~~~~~~~Wsp--Dg~~l~y~~~~~~~~~ 203 (732)
.+.-+.|-|++++||-..+ ..|.+|+++.+.. .. ...+ .-.+.+-+||| ||..++.+.
T Consensus 125 ~i~cvew~Pns~klasm~d------n~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~------- 191 (370)
T KOG1007|consen 125 KINCVEWEPNSDKLASMDD------NNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS------- 191 (370)
T ss_pred ceeeEEEcCCCCeeEEecc------CceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC-------
Confidence 4677889999999997752 4788999987653 11 1111 12367789999 888888763
Q ss_pred CCCCCCCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCC
Q 004766 204 KDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSA 278 (732)
Q Consensus 204 ~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~ 278 (732)
...++.|++.|.... -.| +. .+.....++.+.|+-++++.+..+. ..|.++|...
T Consensus 192 -------------d~tl~~~D~RT~~~~-~sI-~d-AHgq~vrdlDfNpnkq~~lvt~gDd----gyvriWD~R~ 246 (370)
T KOG1007|consen 192 -------------DSTLQFWDLRTMKKN-NSI-ED-AHGQRVRDLDFNPNKQHILVTCGDD----GYVRIWDTRK 246 (370)
T ss_pred -------------CCcEEEEEccchhhh-cch-hh-hhcceeeeccCCCCceEEEEEcCCC----ccEEEEeccC
Confidence 234788887764321 111 11 1223355788999999988776543 3466778664
|
|
| >KOG2931 consensus Differentiation-related gene 1 protein (NDR1 protein), related proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=93.27 E-value=1.2 Score=44.24 Aligned_cols=130 Identities=8% Similarity=0.029 Sum_probs=82.6
Q ss_pred EEEEEEccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCc---cCCCCc-ChhHHHHHHhcCcEEEEEcccCCCCCch
Q 004766 452 HQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNI---SVTPSF-SVSRTILMRHLGAVFCIANIRGGGEYGE 527 (732)
Q Consensus 452 ~~~~~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~---~~~~~~-~~~~~~~l~~~G~~v~~~~~rG~g~~g~ 527 (732)
++..+.+.-| .|++.++-- ++++.|++|..|.-.-. +....| .+.++.++. + |.+.-++.+|.-.--.
T Consensus 23 ~e~~V~T~~G--~v~V~V~Gd----~~~~kpaiiTyhDlglN~~scFq~ff~~p~m~ei~~-~-fcv~HV~~PGqe~gAp 94 (326)
T KOG2931|consen 23 QEHDVETAHG--VVHVTVYGD----PKGNKPAIITYHDLGLNHKSCFQGFFNFPDMAEILE-H-FCVYHVDAPGQEDGAP 94 (326)
T ss_pred eeeeeccccc--cEEEEEecC----CCCCCceEEEecccccchHhHhHHhhcCHhHHHHHh-h-eEEEecCCCccccCCc
Confidence 3444555557 566665532 23478889998874221 122233 345566666 5 9999999998643211
Q ss_pred hHHhcccccCCccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCc
Q 004766 528 EWHKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGV 595 (732)
Q Consensus 528 ~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~ 595 (732)
.+.. ...-.+.+|+.+.+-.+.+. ..-+.|..+|--+|+++-++.|..+|++.-+.|+..+.
T Consensus 95 ~~p~----~y~yPsmd~LAd~l~~VL~~--f~lk~vIg~GvGAGAyIL~rFAl~hp~rV~GLvLIn~~ 156 (326)
T KOG2931|consen 95 SFPE----GYPYPSMDDLADMLPEVLDH--FGLKSVIGMGVGAGAYILARFALNHPERVLGLVLINCD 156 (326)
T ss_pred cCCC----CCCCCCHHHHHHHHHHHHHh--cCcceEEEecccccHHHHHHHHhcChhheeEEEEEecC
Confidence 1111 11123566666666655544 22357999999999999999999999999999887653
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.24 E-value=17 Score=40.70 Aligned_cols=223 Identities=13% Similarity=0.077 Sum_probs=116.0
Q ss_pred CceEEEEEEECCCCceecccccc--eeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCCcccEEEEEECCCCCCCC
Q 004766 155 SDWATIKLMRIEDQIVEADALSW--FKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSED 232 (732)
Q Consensus 155 ~e~~~i~v~dl~~g~~~~~~~~~--~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~ 232 (732)
+...+|.+||..+|..+.....+ .....+.+.--+..++-.+ ...++.+|+..+++..
T Consensus 225 s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS-------------------~D~t~rvWd~~sg~C~- 284 (537)
T KOG0274|consen 225 SDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGS-------------------TDKTERVWDCSTGECT- 284 (537)
T ss_pred CCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEe-------------------cCCcEEeEecCCCcEE-
Confidence 44468999999998855331211 1224555543233333332 2346888998887643
Q ss_pred eEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCCCCcEEeeecccceEEEEEec
Q 004766 233 ILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIAND 312 (732)
Q Consensus 233 ~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~d 312 (732)
.++.... .- .-..+-++..+ ... +....|.+++++++. ...+..+....+....-+
T Consensus 285 -~~l~gh~--st--v~~~~~~~~~~-~sg----s~D~tVkVW~v~n~~--------------~l~l~~~h~~~V~~v~~~ 340 (537)
T KOG0274|consen 285 -HSLQGHT--SS--VRCLTIDPFLL-VSG----SRDNTVKVWDVTNGA--------------CLNLLRGHTGPVNCVQLD 340 (537)
T ss_pred -EEecCCC--ce--EEEEEccCceE-eec----cCCceEEEEeccCcc--------------eEEEeccccccEEEEEec
Confidence 2332211 11 12223333332 221 123568888887643 223333222233334445
Q ss_pred CCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecCCEEEEEEecCCeeEEEEEeCCCC-ceeeeccc
Q 004766 313 DTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNG-SLLHQLPI 391 (732)
Q Consensus 313 g~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~~l~~~~~~~g~~~l~~~d~~~g-~~~~~l~~ 391 (732)
+..++..+.+ +.|-.+++.+++..+.+..|. ..+..+.+.. ...++...-+ ..|.+||+.++ +.+..+..
T Consensus 341 ~~~lvsgs~d----~~v~VW~~~~~~cl~sl~gH~--~~V~sl~~~~-~~~~~Sgs~D--~~IkvWdl~~~~~c~~tl~~ 411 (537)
T KOG0274|consen 341 EPLLVSGSYD----GTVKVWDPRTGKCLKSLSGHT--GRVYSLIVDS-ENRLLSGSLD--TTIKVWDLRTKRKCIHTLQG 411 (537)
T ss_pred CCEEEEEecC----ceEEEEEhhhceeeeeecCCc--ceEEEEEecC-cceEEeeeec--cceEeecCCchhhhhhhhcC
Confidence 6655544332 357777877777667777665 4566665443 2556666666 57999999866 44445554
Q ss_pred ccceeeEeecccCCcEEEEEEecCCCCceEEEEECCCCCCceEEEE
Q 004766 392 EIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTETPEMKIFR 437 (732)
Q Consensus 392 ~~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~~~~~~~l~ 437 (732)
+...++.+. ..++ ++++. + -.+++..+|..+++ ....+.
T Consensus 412 h~~~v~~l~--~~~~-~Lvs~-~--aD~~Ik~WD~~~~~-~~~~~~ 450 (537)
T KOG0274|consen 412 HTSLVSSLL--LRDN-FLVSS-S--ADGTIKLWDAEEGE-CLRTLE 450 (537)
T ss_pred Ccccccccc--cccc-eeEec-c--ccccEEEeecccCc-eeeeec
Confidence 444444333 2333 23222 2 23478888888775 244443
|
|
| >KOG1282 consensus Serine carboxypeptidases (lysosomal cathepsin A) [Posttranslational modification, protein turnover, chaperones; Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.22 E-value=0.41 Score=51.55 Aligned_cols=141 Identities=15% Similarity=0.077 Sum_probs=86.9
Q ss_pred EEEEccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhH----------------HHHHHhcCcEEEEE
Q 004766 454 VFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSR----------------TILMRHLGAVFCIA 517 (732)
Q Consensus 454 ~~~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~----------------~~~l~~~G~~v~~~ 517 (732)
+.+.-..| ..+..|++--.. .....|+||++-||||-+...++..+. -.| . +=..++..
T Consensus 49 v~v~~~~~-~~LFYwf~eS~~--~P~~dPlvLWLnGGPGCSSl~G~~~E~GPf~v~~~G~tL~~N~ySW-n-k~aNiLfL 123 (454)
T KOG1282|consen 49 VTVNESEG-RQLFYWFFESEN--NPETDPLVLWLNGGPGCSSLGGLFEENGPFRVKYNGKTLYLNPYSW-N-KEANILFL 123 (454)
T ss_pred EECCCCCC-ceEEEEEEEccC--CCCCCCEEEEeCCCCCccchhhhhhhcCCeEEcCCCCcceeCCccc-c-ccccEEEE
Confidence 44443467 788888876553 235689999999999976432221111 011 1 22345666
Q ss_pred cccCCCCCchhHHhcccccCCccHHHHHHHH-HHHHHHcCCCCCCcEEEEecChhHHHHHHHHh----hCC------Cee
Q 004766 518 NIRGGGEYGEEWHKGGALAKKQNCFDDFISA-SEYLISAGYTQSRKLCIEGGSNGGLLVGACIN----QRP------DLF 586 (732)
Q Consensus 518 ~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~-~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~----~~p------~~f 586 (732)
|.+-|.||...-...........+.+|+..+ .+|+.+...--.+.+.|.|-|++|..+-+++. .+. --+
T Consensus 124 d~PvGvGFSYs~~~~~~~~~D~~~A~d~~~FL~~wf~kfPey~~~~fyI~GESYAG~YVP~La~~I~~~N~~~~~~~iNL 203 (454)
T KOG1282|consen 124 DQPVGVGFSYSNTSSDYKTGDDGTAKDNYEFLQKWFEKFPEYKSNDFYIAGESYAGHYVPALAQEILKGNKKCCKPNINL 203 (454)
T ss_pred ecCCcCCccccCCCCcCcCCcHHHHHHHHHHHHHHHHhChhhcCCCeEEecccccceehHHHHHHHHhccccccCCcccc
Confidence 7776666644322222223344455666655 55777765555678999999999976555544 321 258
Q ss_pred eEEEEcCCccccc
Q 004766 587 GCALAHVGVMDML 599 (732)
Q Consensus 587 ~a~v~~~p~~d~~ 599 (732)
++.+.+.|++|..
T Consensus 204 kG~~IGNg~td~~ 216 (454)
T KOG1282|consen 204 KGYAIGNGLTDPE 216 (454)
T ss_pred eEEEecCcccCcc
Confidence 9999999998864
|
|
| >PF05057 DUF676: Putative serine esterase (DUF676); InterPro: IPR007751 This domain, whose function is unknown, is found within a group of putative lipases | Back alignment and domain information |
|---|
Probab=93.14 E-value=0.11 Score=50.79 Aligned_cols=22 Identities=32% Similarity=0.466 Sum_probs=18.5
Q ss_pred CCcEEEEecChhHHHHHHHHhh
Q 004766 560 SRKLCIEGGSNGGLLVGACINQ 581 (732)
Q Consensus 560 ~~~i~i~G~S~GG~l~~~~~~~ 581 (732)
..+|.++|||+||+++-.++..
T Consensus 77 ~~~IsfIgHSLGGli~r~al~~ 98 (217)
T PF05057_consen 77 IRKISFIGHSLGGLIARYALGL 98 (217)
T ss_pred cccceEEEecccHHHHHHHHHH
Confidence 3689999999999998777763
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.08 E-value=10 Score=37.82 Aligned_cols=155 Identities=15% Similarity=0.156 Sum_probs=79.7
Q ss_pred eEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCCCCcEEeeecccceE-EEEEecCCeEEEEeCC
Q 004766 244 YIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQY-EVIANDDTVFTFLTNK 322 (732)
Q Consensus 244 ~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~s~dg~~l~~~s~~ 322 (732)
.+....|-..|++++-.+++.. --++|+++++ .+..|+ +.+.+. .+-.+-.++|.+.+.+
T Consensus 274 vV~a~dWL~gg~Q~vTaSWDRT-----AnlwDVEtge-------------~v~~Lt-GHd~ELtHcstHptQrLVvTsSr 334 (481)
T KOG0300|consen 274 VVSACDWLAGGQQMVTASWDRT-----ANLWDVETGE-------------VVNILT-GHDSELTHCSTHPTQRLVVTSSR 334 (481)
T ss_pred ceEehhhhcCcceeeeeecccc-----ceeeeeccCc-------------eecccc-CcchhccccccCCcceEEEEecc
Confidence 3344557778888877776554 2355777753 122333 333333 2333446788887777
Q ss_pred CCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecCCEEEEEEecCCeeEEEEEeCCCCc-eeeecccccceeeEeec
Q 004766 323 DAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGS-LLHQLPIEIGSVNAISA 401 (732)
Q Consensus 323 ~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~~l~~~~~~~g~~~l~~~d~~~g~-~~~~l~~~~g~v~~~~~ 401 (732)
+. .|+||-+. ..-.-..++..- ...+.++.+..|++ +++..++ ..+.+||+.+-. .+..|.. ...+..+..
T Consensus 335 Dt-TFRLWDFR--eaI~sV~VFQGH-tdtVTS~vF~~dd~-vVSgSDD--rTvKvWdLrNMRsplATIRt-dS~~NRvav 406 (481)
T KOG0300|consen 335 DT-TFRLWDFR--EAIQSVAVFQGH-TDTVTSVVFNTDDR-VVSGSDD--RTVKVWDLRNMRSPLATIRT-DSPANRVAV 406 (481)
T ss_pred Cc-eeEeccch--hhcceeeeeccc-ccceeEEEEecCCc-eeecCCC--ceEEEeeeccccCcceeeec-CCccceeEe
Confidence 54 56776543 211113344332 24566666666344 5566666 478999987322 1122221 122333344
Q ss_pred ccCCcEEEEEEecCCCCceEEEEECCCC
Q 004766 402 RREDSVVFISFTSFLIPGIVYQCNLKTE 429 (732)
Q Consensus 402 s~d~~~l~~~~ss~~~p~~~y~~d~~~~ 429 (732)
+..++.+.+ +-...++..+|+.+.
T Consensus 407 s~g~~iIAi----PhDNRqvRlfDlnG~ 430 (481)
T KOG0300|consen 407 SKGHPIIAI----PHDNRQVRLFDLNGN 430 (481)
T ss_pred ecCCceEEe----ccCCceEEEEecCCC
Confidence 444444432 223356777777654
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.02 E-value=3.7 Score=39.51 Aligned_cols=73 Identities=19% Similarity=0.192 Sum_probs=48.0
Q ss_pred EEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEec-cCCCCCceeEEEEecCCEEEEEEecCCeeEEEEEeCCCCceee
Q 004766 309 IANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVI-PEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLH 387 (732)
Q Consensus 309 ~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~-~~~~~~~l~~~~~~~~~~l~~~~~~~g~~~l~~~d~~~g~~~~ 387 (732)
..|..+.+++.. ....+|.+|+++++ ++..+ .|. ..+..+..-..+.-+++..+|| .+++||..+++.+.
T Consensus 122 ldP~enSi~~Ag----GD~~~y~~dlE~G~-i~r~~rGHt--DYvH~vv~R~~~~qilsG~EDG--tvRvWd~kt~k~v~ 192 (325)
T KOG0649|consen 122 LDPSENSILFAG----GDGVIYQVDLEDGR-IQREYRGHT--DYVHSVVGRNANGQILSGAEDG--TVRVWDTKTQKHVS 192 (325)
T ss_pred eccCCCcEEEec----CCeEEEEEEecCCE-EEEEEcCCc--ceeeeeeecccCcceeecCCCc--cEEEEeccccceeE
Confidence 456666777643 35689999999997 44444 343 4555555422244567777885 67889998888655
Q ss_pred ecc
Q 004766 388 QLP 390 (732)
Q Consensus 388 ~l~ 390 (732)
.|.
T Consensus 193 ~ie 195 (325)
T KOG0649|consen 193 MIE 195 (325)
T ss_pred Eec
Confidence 554
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=93.00 E-value=10 Score=37.55 Aligned_cols=151 Identities=12% Similarity=0.107 Sum_probs=79.4
Q ss_pred eeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCCcccEEEEEECCCCCC-CCeEEEecCCC-CeeEEEeEEec--CC
Q 004766 179 KFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQS-EDILCWKDPEH-PKYIFSGHVTE--DG 254 (732)
Q Consensus 179 ~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~-~~~~v~~~~~~-~~~~~~~~~Sp--Dg 254 (732)
+...+.|-|+++.++-... ..|.+|++..+.. ...+...+..+ ..-+.+..||| ||
T Consensus 125 ~i~cvew~Pns~klasm~d--------------------n~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdg 184 (370)
T KOG1007|consen 125 KINCVEWEPNSDKLASMDD--------------------NNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDG 184 (370)
T ss_pred ceeeEEEcCCCCeeEEecc--------------------CceEEEEcccCcchheeecccccccccceecccccCCCCcc
Confidence 3478999999999987642 2477888876544 22222211111 12345788999 89
Q ss_pred cEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCCCCcEEeeecccceEEEEEecCCeEEEEeCCCCCCceEEEEeC
Q 004766 255 QYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDL 334 (732)
Q Consensus 255 ~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~ 334 (732)
..++.... ..++.+|+.+..+.. .+. +. -..++.. . -+.|+-+++++...+ .+.|-.+|.
T Consensus 185 nqv~tt~d------~tl~~~D~RT~~~~~-sI~--dA---Hgq~vrd----l-DfNpnkq~~lvt~gD---dgyvriWD~ 244 (370)
T KOG1007|consen 185 NQVATTSD------STLQFWDLRTMKKNN-SIE--DA---HGQRVRD----L-DFNPNKQHILVTCGD---DGYVRIWDT 244 (370)
T ss_pred ceEEEeCC------CcEEEEEccchhhhc-chh--hh---hcceeee----c-cCCCCceEEEEEcCC---CccEEEEec
Confidence 98875542 337778877632110 000 00 0001111 1 255665555544433 345777787
Q ss_pred CCCC-CceEeccCCCCCceeEEEEec-CCEEEEEEecCC
Q 004766 335 KEPN-DWFEVIPEAERDVLESATAVN-LNQMIVSYLSDV 371 (732)
Q Consensus 335 ~~~~-~~~~l~~~~~~~~l~~~~~~~-~~~l~~~~~~~g 371 (732)
...+ ..+++-++. ..+-.+.+.+ -+.|+++...|.
T Consensus 245 R~tk~pv~el~~Hs--HWvW~VRfn~~hdqLiLs~~SDs 281 (370)
T KOG1007|consen 245 RKTKFPVQELPGHS--HWVWAVRFNPEHDQLILSGGSDS 281 (370)
T ss_pred cCCCccccccCCCc--eEEEEEEecCccceEEEecCCCc
Confidence 6554 234444443 4444455443 256777776664
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=92.86 E-value=0.43 Score=52.48 Aligned_cols=114 Identities=18% Similarity=0.176 Sum_probs=64.9
Q ss_pred EEEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceec-ccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCC
Q 004766 132 AALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEA-DALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGT 210 (732)
Q Consensus 132 ~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~-~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~ 210 (732)
--|..+.++++..+||- |....+|++|||+.+..+. .+-...+...+.|.|=+.+++-.+
T Consensus 71 spIeSl~f~~~E~Llaa-----gsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gS-------------- 131 (825)
T KOG0267|consen 71 SPIESLTFDTSERLLAA-----GSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGS-------------- 131 (825)
T ss_pred CcceeeecCcchhhhcc-----cccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEecccc--------------
Confidence 34678899999998883 4444689999999887443 111111235677999776552221
Q ss_pred cccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCC
Q 004766 211 ETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSA 278 (732)
Q Consensus 211 ~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~ 278 (732)
....+..|++--.. +++....+......+.+||||+|++-... .+.+-++|+..
T Consensus 132 -----tdtd~~iwD~Rk~G----c~~~~~s~~~vv~~l~lsP~Gr~v~~g~e-----d~tvki~d~~a 185 (825)
T KOG0267|consen 132 -----TDTDLKIWDIRKKG----CSHTYKSHTRVVDVLRLSPDGRWVASGGE-----DNTVKIWDLTA 185 (825)
T ss_pred -----ccccceehhhhccC----ceeeecCCcceeEEEeecCCCceeeccCC-----cceeeeecccc
Confidence 11223334432111 22221223434456789999999865432 23466667654
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=92.51 E-value=18 Score=39.03 Aligned_cols=100 Identities=11% Similarity=0.051 Sum_probs=55.5
Q ss_pred cCCeEEEEeCCCCCCceEEEEeCCCCC-CceEeccCCCCCceeEEEEecCCEEEEEEecCCeeEEEEEeCCCCceeeecc
Q 004766 312 DDTVFTFLTNKDAPKYKIIRVDLKEPN-DWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLP 390 (732)
Q Consensus 312 dg~~l~~~s~~~~~~~~l~~~d~~~~~-~~~~l~~~~~~~~l~~~~~~~~~~l~~~~~~~g~~~l~~~d~~~g~~~~~l~ 390 (732)
.++.+|+.+. ...|+.+|+++++ .|+.-+.. ...+...+ +.+|+.... .+|+.+|..+|+.+-...
T Consensus 255 ~~~~vy~~~~----~g~l~ald~~tG~~~W~~~~~~-----~~~~~~~~-~~vy~~~~~---g~l~ald~~tG~~~W~~~ 321 (394)
T PRK11138 255 VGGVVYALAY----NGNLVALDLRSGQIVWKREYGS-----VNDFAVDG-GRIYLVDQN---DRVYALDTRGGVELWSQS 321 (394)
T ss_pred ECCEEEEEEc----CCeEEEEECCCCCEEEeecCCC-----ccCcEEEC-CEEEEEcCC---CeEEEEECCCCcEEEccc
Confidence 3567777553 2479999998886 24422211 12233333 777776533 479999998887532222
Q ss_pred c-ccceeeEeecccCCcEEEEEEecCCCCceEEEEECCCCC
Q 004766 391 I-EIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 430 (732)
Q Consensus 391 ~-~~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~~ 430 (732)
. .......... .++.+++.-. -..++.+|..+|+
T Consensus 322 ~~~~~~~~sp~v--~~g~l~v~~~----~G~l~~ld~~tG~ 356 (394)
T PRK11138 322 DLLHRLLTAPVL--YNGYLVVGDS----EGYLHWINREDGR 356 (394)
T ss_pred ccCCCcccCCEE--ECCEEEEEeC----CCEEEEEECCCCC
Confidence 1 1111111111 2455655422 3579999999985
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.51 E-value=4.5 Score=38.93 Aligned_cols=72 Identities=17% Similarity=0.158 Sum_probs=44.5
Q ss_pred eeEEEEecC-CEEEEEEecCCeeEEEEEeCCCCceeeecccccceeeEeecccCCcEEEEEEecCCCCceEEEEECCCCC
Q 004766 352 LESATAVNL-NQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 430 (732)
Q Consensus 352 l~~~~~~~~-~~l~~~~~~~g~~~l~~~d~~~g~~~~~l~~~~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~~ 430 (732)
|..+.+.+. +.+++.. |...+|.||+++|+..+.+..+..-+..+.......+++ |-..-+++..+|..+++
T Consensus 117 INam~ldP~enSi~~Ag---GD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qil----sG~EDGtvRvWd~kt~k 189 (325)
T KOG0649|consen 117 INAMWLDPSENSILFAG---GDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQIL----SGAEDGTVRVWDTKTQK 189 (325)
T ss_pred cceeEeccCCCcEEEec---CCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCccee----ecCCCccEEEEeccccc
Confidence 455666653 5566655 447899999999998666665544444444322233343 22344678888988886
|
|
| >KOG3975 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.36 E-value=2 Score=41.68 Aligned_cols=116 Identities=13% Similarity=0.094 Sum_probs=61.2
Q ss_pred eeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHH-HhcC--cEEEEEcccCCCCCchhHHhcccc-cCC
Q 004766 463 TKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILM-RHLG--AVFCIANIRGGGEYGEEWHKGGAL-AKK 538 (732)
Q Consensus 463 ~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l-~~~G--~~v~~~~~rG~g~~g~~~~~~~~~-~~~ 538 (732)
..+....+.|--.+.....|+++++-|.||. .+|-..+..-| .+.+ .-+..+-.-|.-.....-.++... ...
T Consensus 11 l~~si~~~~~~v~~~~~~~~li~~IpGNPG~---~gFY~~F~~~L~~~l~~r~~~wtIsh~~H~~~P~sl~~~~s~~~~e 87 (301)
T KOG3975|consen 11 LPTSILTLKPWVTKSGEDKPLIVWIPGNPGL---LGFYTEFARHLHLNLIDRLPVWTISHAGHALMPASLREDHSHTNEE 87 (301)
T ss_pred CcccceeeeeeeccCCCCceEEEEecCCCCc---hhHHHHHHHHHHHhcccccceeEEeccccccCCccccccccccccc
Confidence 4444444444433345778999999998885 35555543222 2223 113222222322222111111111 112
Q ss_pred ccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhh
Q 004766 539 QNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQ 581 (732)
Q Consensus 539 ~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~ 581 (732)
.-.++|.+.---..+++-...-.||.++|||-|.||++.++-.
T Consensus 88 ifsL~~QV~HKlaFik~~~Pk~~ki~iiGHSiGaYm~Lqil~~ 130 (301)
T KOG3975|consen 88 IFSLQDQVDHKLAFIKEYVPKDRKIYIIGHSIGAYMVLQILPS 130 (301)
T ss_pred ccchhhHHHHHHHHHHHhCCCCCEEEEEecchhHHHHHHHhhh
Confidence 2345555544223334444455799999999999999998874
|
|
| >COG3319 Thioesterase domains of type I polyketide synthases or non-ribosomal peptide synthetases [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=92.07 E-value=0.47 Score=47.21 Aligned_cols=85 Identities=15% Similarity=0.008 Sum_probs=53.4
Q ss_pred cEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCccHHHHHHHHHHHHHHcCCCCCC
Q 004766 482 PCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSR 561 (732)
Q Consensus 482 P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ 561 (732)
|.|+.+|++.|. .+.|.+ +...+. .-..|+....+|-+. ......+++|..++.-..+.+- -.-.
T Consensus 1 ~pLF~fhp~~G~--~~~~~~-L~~~l~-~~~~v~~l~a~g~~~----------~~~~~~~l~~~a~~yv~~Ir~~-QP~G 65 (257)
T COG3319 1 PPLFCFHPAGGS--VLAYAP-LAAALG-PLLPVYGLQAPGYGA----------GEQPFASLDDMAAAYVAAIRRV-QPEG 65 (257)
T ss_pred CCEEEEcCCCCc--HHHHHH-HHHHhc-cCceeeccccCcccc----------cccccCCHHHHHHHHHHHHHHh-CCCC
Confidence 578899998775 344543 234555 347788888887543 1223345566665433222221 1124
Q ss_pred cEEEEecChhHHHHHHHHhh
Q 004766 562 KLCIEGGSNGGLLVGACINQ 581 (732)
Q Consensus 562 ~i~i~G~S~GG~l~~~~~~~ 581 (732)
-..+.|+|+||.++..++.+
T Consensus 66 Py~L~G~S~GG~vA~evA~q 85 (257)
T COG3319 66 PYVLLGWSLGGAVAFEVAAQ 85 (257)
T ss_pred CEEEEeeccccHHHHHHHHH
Confidence 69999999999999988875
|
|
| >PRK10252 entF enterobactin synthase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=91.97 E-value=0.63 Score=58.96 Aligned_cols=99 Identities=12% Similarity=-0.027 Sum_probs=62.8
Q ss_pred ccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCccHHHHHHHHHHHHHHcCCCCC
Q 004766 481 HPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQS 560 (732)
Q Consensus 481 ~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~ 560 (732)
.|.++++||..+.. ..|. .+...|. .++.|+.++.+|.+.. .....+++++.+.+...+..-. ..
T Consensus 1068 ~~~l~~lh~~~g~~--~~~~-~l~~~l~-~~~~v~~~~~~g~~~~----------~~~~~~l~~la~~~~~~i~~~~-~~ 1132 (1296)
T PRK10252 1068 GPTLFCFHPASGFA--WQFS-VLSRYLD-PQWSIYGIQSPRPDGP----------MQTATSLDEVCEAHLATLLEQQ-PH 1132 (1296)
T ss_pred CCCeEEecCCCCch--HHHH-HHHHhcC-CCCcEEEEECCCCCCC----------CCCCCCHHHHHHHHHHHHHhhC-CC
Confidence 46789999987753 2333 2345565 6899999999986531 1122345555544333333211 12
Q ss_pred CcEEEEecChhHHHHHHHHhh---CCCeeeEEEEcCC
Q 004766 561 RKLCIEGGSNGGLLVGACINQ---RPDLFGCALAHVG 594 (732)
Q Consensus 561 ~~i~i~G~S~GG~l~~~~~~~---~p~~f~a~v~~~p 594 (732)
.+..+.|+|+||.++..++.+ +++....+++..+
T Consensus 1133 ~p~~l~G~S~Gg~vA~e~A~~l~~~~~~v~~l~l~~~ 1169 (1296)
T PRK10252 1133 GPYHLLGYSLGGTLAQGIAARLRARGEEVAFLGLLDT 1169 (1296)
T ss_pred CCEEEEEechhhHHHHHHHHHHHHcCCceeEEEEecC
Confidence 479999999999999988874 5777777665443
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=91.81 E-value=20 Score=38.21 Aligned_cols=92 Identities=15% Similarity=0.230 Sum_probs=49.4
Q ss_pred ceEEEEeCCCCC-CceEeccCCCC-C-------ceeEEEEecCCEEEEEEecCCeeEEEEEeCCCCceeeecccccceee
Q 004766 327 YKIIRVDLKEPN-DWFEVIPEAER-D-------VLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVN 397 (732)
Q Consensus 327 ~~l~~~d~~~~~-~~~~l~~~~~~-~-------~l~~~~~~~~~~l~~~~~~~g~~~l~~~d~~~g~~~~~l~~~~g~v~ 397 (732)
.+++.+|+++++ .|+.-+..... . ......+.+ +.+|+... + ..++.+|.++|+.+-..... ...
T Consensus 200 g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~-~~vy~~~~-~--g~l~a~d~~tG~~~W~~~~~--~~~ 273 (377)
T TIGR03300 200 GKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDG-GQVYAVSY-Q--GRVAALDLRSGRVLWKRDAS--SYQ 273 (377)
T ss_pred CEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEEC-CEEEEEEc-C--CEEEEEECCCCcEEEeeccC--Ccc
Confidence 479999988775 24322211100 0 011222333 66666543 3 36999999888764333321 111
Q ss_pred EeecccCCcEEEEEEecCCCCceEEEEECCCCC
Q 004766 398 AISARREDSVVFISFTSFLIPGIVYQCNLKTET 430 (732)
Q Consensus 398 ~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~~ 430 (732)
. +..+++.+++.. .-..++.+|..+|+
T Consensus 274 ~--p~~~~~~vyv~~----~~G~l~~~d~~tG~ 300 (377)
T TIGR03300 274 G--PAVDDNRLYVTD----ADGVVVALDRRSGS 300 (377)
T ss_pred C--ceEeCCEEEEEC----CCCeEEEEECCCCc
Confidence 1 123456666543 23689999998884
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=91.80 E-value=13 Score=41.36 Aligned_cols=67 Identities=10% Similarity=0.006 Sum_probs=41.9
Q ss_pred eeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEE
Q 004766 180 FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVM 259 (732)
Q Consensus 180 ~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~ 259 (732)
...++-||+|+.|+-+..-. ......|++|..++=.....+ ..+.--+..+.|||||++|+-
T Consensus 528 v~~l~~s~~gnliASaCKS~--------------~~ehAvI~lw~t~~W~~~~~L----~~HsLTVT~l~FSpdg~~LLs 589 (764)
T KOG1063|consen 528 VYALAISPTGNLIASACKSS--------------LKEHAVIRLWNTANWLQVQEL----EGHSLTVTRLAFSPDGRYLLS 589 (764)
T ss_pred EEEEEecCCCCEEeehhhhC--------------CccceEEEEEeccchhhhhee----cccceEEEEEEECCCCcEEEE
Confidence 45678888888777654322 123446888887653322212 223444668999999999987
Q ss_pred EEecC
Q 004766 260 CIEEN 264 (732)
Q Consensus 260 ~~~~~ 264 (732)
.+.++
T Consensus 590 vsRDR 594 (764)
T KOG1063|consen 590 VSRDR 594 (764)
T ss_pred eecCc
Confidence 76543
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.74 E-value=1.9 Score=48.75 Aligned_cols=115 Identities=20% Similarity=0.217 Sum_probs=72.8
Q ss_pred CCEEEEeEEECCCCcEEEEEEeccCCceEEEEEEECCC--Cceecc-cccc--eeeeeEEEEeCCcEEEEEEecCCCCCC
Q 004766 130 GTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIED--QIVEAD-ALSW--FKFSSIAWTHDSKGFFYSRYPAPKEGK 204 (732)
Q Consensus 130 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~--g~~~~~-~~~~--~~~~~~~WspDg~~l~y~~~~~~~~~~ 204 (732)
+.+.+.-.++||.++++|-.-+ + .+|.||.--+ +...+. .+.+ ....+++||+||..|+-.
T Consensus 204 Htf~~t~~~~spn~~~~Aa~d~-d----GrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSG--------- 269 (792)
T KOG1963|consen 204 HTFNITCVALSPNERYLAAGDS-D----GRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSG--------- 269 (792)
T ss_pred hcccceeEEeccccceEEEecc-C----CcEEEEeccccccccccceEEEecccccceeEEecCCceEeec---------
Confidence 3344667899999999986643 2 3577775322 221111 1111 135789999999887743
Q ss_pred CCCCCCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCC
Q 004766 205 DMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSA 278 (732)
Q Consensus 205 ~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~ 278 (732)
++-..+.+|.++|+..+ ++ |.-...+..+.+|||+.+.++...+ +.|.++.+.+
T Consensus 270 ----------G~E~VLv~Wq~~T~~kq--fL---PRLgs~I~~i~vS~ds~~~sl~~~D-----NqI~li~~~d 323 (792)
T KOG1963|consen 270 ----------GREGVLVLWQLETGKKQ--FL---PRLGSPILHIVVSPDSDLYSLVLED-----NQIHLIKASD 323 (792)
T ss_pred ----------ccceEEEEEeecCCCcc--cc---cccCCeeEEEEEcCCCCeEEEEecC-----ceEEEEeccc
Confidence 34456889999998633 33 2222346689999999998777653 4466666543
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=91.68 E-value=16 Score=36.87 Aligned_cols=97 Identities=13% Similarity=0.131 Sum_probs=61.9
Q ss_pred ceEEEEEEECCCCceeccc-ccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCCcccEEEEEECCCCCCCCeE
Q 004766 156 DWATIKLMRIEDQIVEADA-LSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDIL 234 (732)
Q Consensus 156 e~~~i~v~dl~~g~~~~~~-~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~ 234 (732)
-...|+|+|+.+++....- ..+.....+.+-|+.-.|+.+.. ..+.|.+|++.+.. -+.
T Consensus 113 ~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~S------------------kD~svRlwnI~~~~--Cv~ 172 (385)
T KOG1034|consen 113 YLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSAS------------------KDHSVRLWNIQTDV--CVA 172 (385)
T ss_pred ceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEec------------------CCceEEEEeccCCe--EEE
Confidence 4579999999988754321 12223467888898877777642 34578999997653 235
Q ss_pred EEecCC-CCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCC
Q 004766 235 CWKDPE-HPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLS 277 (732)
Q Consensus 235 v~~~~~-~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~ 277 (732)
||.+-. +..-+.++.||+||.+|+-...+. .|.++++.
T Consensus 173 VfGG~egHrdeVLSvD~~~~gd~i~ScGmDh-----slk~W~l~ 211 (385)
T KOG1034|consen 173 VFGGVEGHRDEVLSVDFSLDGDRIASCGMDH-----SLKLWRLN 211 (385)
T ss_pred EecccccccCcEEEEEEcCCCCeeeccCCcc-----eEEEEecC
Confidence 554322 233467999999999987554433 24455554
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.47 E-value=32 Score=39.73 Aligned_cols=242 Identities=10% Similarity=0.031 Sum_probs=129.6
Q ss_pred EEEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceeccccc-ceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCC
Q 004766 132 AALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALS-WFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGT 210 (732)
Q Consensus 132 ~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~ 210 (732)
..+.+++|.|.--+|+-+.. + ..|.+||-.=|..+....+ .....++.|.|+.- ||++
T Consensus 10 sRvKglsFHP~rPwILtslH-s----G~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qp-lFVS--------------- 68 (1202)
T KOG0292|consen 10 SRVKGLSFHPKRPWILTSLH-S----GVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQP-LFVS--------------- 68 (1202)
T ss_pred ccccceecCCCCCEEEEeec-C----ceeeeehhhhhhHHhhhhccCCccceeeecCCCC-eEEe---------------
Confidence 34668999999999987764 2 3788898776665432211 11247899999875 3333
Q ss_pred cccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccC
Q 004766 211 ETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRD 290 (732)
Q Consensus 211 ~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~ 290 (732)
.+...+|.+|+..+ ..++|....+..|+....|.+.=-||+-.+.+ ..|.+|+..++.
T Consensus 69 ---GGDDykIkVWnYk~----rrclftL~GHlDYVRt~~FHheyPWIlSASDD-----QTIrIWNwqsr~---------- 126 (1202)
T KOG0292|consen 69 ---GGDDYKIKVWNYKT----RRCLFTLLGHLDYVRTVFFHHEYPWILSASDD-----QTIRIWNWQSRK---------- 126 (1202)
T ss_pred ---cCCccEEEEEeccc----ceehhhhccccceeEEeeccCCCceEEEccCC-----CeEEEEeccCCc----------
Confidence 13345677777654 34677665566677788888888887655432 236666666532
Q ss_pred CCCCcEEeeecccceE-EEEEecCCeEEEEeCCCCCCceEEEEeCCCCC-----C------------ceEecc-------
Q 004766 291 GLLPFVKLIDGFDAQY-EVIANDDTVFTFLTNKDAPKYKIIRVDLKEPN-----D------------WFEVIP------- 345 (732)
Q Consensus 291 ~~~~~~~l~~~~~~~~-~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~-----~------------~~~l~~------- 345 (732)
++..++......- ..|.|..+ +++....+. .+-++|+.+-. . -..|++
T Consensus 127 ---~iavltGHnHYVMcAqFhptED-lIVSaSLDQ---TVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK 199 (1202)
T KOG0292|consen 127 ---CIAVLTGHNHYVMCAQFHPTED-LIVSASLDQ---TVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVK 199 (1202)
T ss_pred ---eEEEEecCceEEEeeccCCccc-eEEEecccc---eEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeee
Confidence 2333333221111 12555433 444433332 35555654311 0 011222
Q ss_pred ---CCCCCceeEEEEecCCEEEEEEecCCeeEEEEEeCCCCceeeeccc---ccceeeEeecccCCcEEEEEEecCCCCc
Q 004766 346 ---EAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPI---EIGSVNAISARREDSVVFISFTSFLIPG 419 (732)
Q Consensus 346 ---~~~~~~l~~~~~~~~~~l~~~~~~~g~~~l~~~d~~~g~~~~~l~~---~~g~v~~~~~s~d~~~l~~~~ss~~~p~ 419 (732)
+..++-+..+++.+.--++++..+|-.-++|+|+- .+. -++.. +-+.|+++-+.|..+ +.++-+. -.
T Consensus 200 ~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmne--tKa-WEvDtcrgH~nnVssvlfhp~q~-lIlSnsE---Dk 272 (1202)
T KOG0292|consen 200 HVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNE--TKA-WEVDTCRGHYNNVSSVLFHPHQD-LILSNSE---DK 272 (1202)
T ss_pred eeecccccccceEEecCCcceEEecCCcceeeEEEecc--ccc-eeehhhhcccCCcceEEecCccc-eeEecCC---Cc
Confidence 11123344445444345788888875556666653 222 23332 244566666777665 3333322 24
Q ss_pred eEEEEECCCCC
Q 004766 420 IVYQCNLKTET 430 (732)
Q Consensus 420 ~~y~~d~~~~~ 430 (732)
.+..||+...+
T Consensus 273 sirVwDm~kRt 283 (1202)
T KOG0292|consen 273 SIRVWDMTKRT 283 (1202)
T ss_pred cEEEEeccccc
Confidence 56677776543
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=91.39 E-value=9.3 Score=41.68 Aligned_cols=73 Identities=14% Similarity=0.138 Sum_probs=49.7
Q ss_pred CceeEEEEec-CCEEEEEEecCCeeEEEEEeCCCCceeeeccc--ccceeeEeecccCCcEEEEEEecCCCCceEEEEEC
Q 004766 350 DVLESATAVN-LNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPI--EIGSVNAISARREDSVVFISFTSFLIPGIVYQCNL 426 (732)
Q Consensus 350 ~~l~~~~~~~-~~~l~~~~~~~g~~~l~~~d~~~g~~~~~l~~--~~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~ 426 (732)
..+..+.|.. +++|....-..+...+.+..+...+. +.++ -.|.+..+.+.|...+++++... .+..||+
T Consensus 522 k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~s--Q~PF~kskG~vq~v~FHPs~p~lfVaTq~-----~vRiYdL 594 (733)
T KOG0650|consen 522 KSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKS--QSPFRKSKGLVQRVKFHPSKPYLFVATQR-----SVRIYDL 594 (733)
T ss_pred CccceeeeecCCceEEEeccCCCcceEEEEecccccc--cCchhhcCCceeEEEecCCCceEEEEecc-----ceEEEeh
Confidence 3466788875 46676666666777888888864433 3444 26778788888888877765433 5778888
Q ss_pred CCC
Q 004766 427 KTE 429 (732)
Q Consensus 427 ~~~ 429 (732)
..+
T Consensus 595 ~kq 597 (733)
T KOG0650|consen 595 SKQ 597 (733)
T ss_pred hHH
Confidence 765
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.35 E-value=26 Score=38.59 Aligned_cols=218 Identities=14% Similarity=0.160 Sum_probs=117.8
Q ss_pred EEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecc-cccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCc
Q 004766 133 ALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEAD-ALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTE 211 (732)
Q Consensus 133 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~-~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~ 211 (732)
.+.++.+.|-.-++.-+.- +| ++.||+-+|...+.. ...........|-+--.+|+..+++
T Consensus 15 RVKsVd~HPtePw~la~Ly-nG----~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD------------- 76 (794)
T KOG0276|consen 15 RVKSVDFHPTEPWILAALY-NG----DVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDD------------- 76 (794)
T ss_pred ceeeeecCCCCceEEEeee-cC----eeEEEecccceeeeeeeecccchhhheeeeccceEEEecCC-------------
Confidence 3568889999988876653 33 678888887664421 1111112445566666667665432
Q ss_pred ccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCC
Q 004766 212 TDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDG 291 (732)
Q Consensus 212 ~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 291 (732)
.+|.+++.+|.. .+..|+. ++.|+..++..|.--+++-.+ +.. .-++| +-+..
T Consensus 77 ------~~IrVfnynt~e--kV~~FeA--H~DyIR~iavHPt~P~vLtsS-DDm--~iKlW--~we~~------------ 129 (794)
T KOG0276|consen 77 ------MQIRVFNYNTGE--KVKTFEA--HSDYIRSIAVHPTLPYVLTSS-DDM--TIKLW--DWENE------------ 129 (794)
T ss_pred ------ceEEEEecccce--eeEEeec--cccceeeeeecCCCCeEEecC-Ccc--EEEEe--eccCc------------
Confidence 367888888763 4456654 456888899999888875443 222 34444 44431
Q ss_pred CCCcEEeeecccceE--EEEEe-cCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEec-CCE-EEEE
Q 004766 292 LLPFVKLIDGFDAQY--EVIAN-DDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVN-LNQ-MIVS 366 (732)
Q Consensus 292 ~~~~~~l~~~~~~~~--~~~s~-dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~-~~~-l~~~ 366 (732)
..+ .....+...-+ ..|.| |.+.++- +..+. .+-++.+.++..-.+|-.|. .-+..+...+ +++ .+++
T Consensus 130 wa~-~qtfeGH~HyVMqv~fnPkD~ntFaS-~sLDr---TVKVWslgs~~~nfTl~gHe--kGVN~Vdyy~~gdkpylIs 202 (794)
T KOG0276|consen 130 WAC-EQTFEGHEHYVMQVAFNPKDPNTFAS-ASLDR---TVKVWSLGSPHPNFTLEGHE--KGVNCVDYYTGGDKPYLIS 202 (794)
T ss_pred eee-eeEEcCcceEEEEEEecCCCccceee-eeccc---cEEEEEcCCCCCceeeeccc--cCcceEEeccCCCcceEEe
Confidence 111 11222211111 13666 4444442 22222 34445555544334565555 3345555554 234 4445
Q ss_pred EecCCeeEEEEEeCCCCceeeecccccceeeEeecccC
Q 004766 367 YLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARRE 404 (732)
Q Consensus 367 ~~~~g~~~l~~~d~~~g~~~~~l~~~~g~v~~~~~s~d 404 (732)
..+| ..+.+||.++...++.|..+...|+.+.+.|.
T Consensus 203 gaDD--~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~ 238 (794)
T KOG0276|consen 203 GADD--LTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPE 238 (794)
T ss_pred cCCC--ceEEEeecchHHHHHHhhcccccceEEEecCC
Confidence 5555 57899999877666677655444544444443
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=91.23 E-value=17 Score=36.16 Aligned_cols=117 Identities=12% Similarity=0.139 Sum_probs=61.7
Q ss_pred EEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCC-CCCcEEeeecccceEEEEEecCCeEEEEeCCC
Q 004766 245 IFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDG-LLPFVKLIDGFDAQYEVIANDDTVFTFLTNKD 323 (732)
Q Consensus 245 ~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~ 323 (732)
+.+++|+.+|+.++.+....+ .+.+.||...+-. .-+.++.. ..++.+| .|.+ +...++..-.
T Consensus 199 V~DIaf~~~s~~~FASvgaDG----SvRmFDLR~leHS-TIIYE~p~~~~pLlRL---------swnk--qDpnymATf~ 262 (364)
T KOG0290|consen 199 VYDIAFLKGSRDVFASVGADG----SVRMFDLRSLEHS-TIIYEDPSPSTPLLRL---------SWNK--QDPNYMATFA 262 (364)
T ss_pred eeEEEeccCccceEEEecCCC----cEEEEEecccccc-eEEecCCCCCCcceee---------ccCc--CCchHHhhhh
Confidence 468999999988876664332 3666677653200 00011000 0111111 1322 2222222212
Q ss_pred CCCceEEEEeCCCCC-CceEeccCCCCCceeEEEEecC-CEEEEEEecCCeeEEEEEeCC
Q 004766 324 APKYKIIRVDLKEPN-DWFEVIPEAERDVLESATAVNL-NQMIVSYLSDVKYVLQIRDLK 381 (732)
Q Consensus 324 ~~~~~l~~~d~~~~~-~~~~l~~~~~~~~l~~~~~~~~-~~l~~~~~~~g~~~l~~~d~~ 381 (732)
....++..+|+.-+. ...+|-.|. ..+.++.|.+. ...+.+..+| .+..+||+.
T Consensus 263 ~dS~~V~iLDiR~P~tpva~L~~H~--a~VNgIaWaPhS~~hictaGDD--~qaliWDl~ 318 (364)
T KOG0290|consen 263 MDSNKVVILDIRVPCTPVARLRNHQ--ASVNGIAWAPHSSSHICTAGDD--CQALIWDLQ 318 (364)
T ss_pred cCCceEEEEEecCCCcceehhhcCc--ccccceEecCCCCceeeecCCc--ceEEEEecc
Confidence 224578888887765 233444443 67889999984 4456666666 577789986
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=91.16 E-value=16 Score=36.77 Aligned_cols=95 Identities=16% Similarity=0.140 Sum_probs=65.7
Q ss_pred CceEEEEeCCCCCC--ceEeccCCCCCceeEEEEecCCEEEEEEecCCeeEEEEEeCCCCceeeecccc--cceeeEeec
Q 004766 326 KYKIIRVDLKEPND--WFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIE--IGSVNAISA 401 (732)
Q Consensus 326 ~~~l~~~d~~~~~~--~~~l~~~~~~~~l~~~~~~~~~~l~~~~~~~g~~~l~~~d~~~g~~~~~l~~~--~g~v~~~~~ 401 (732)
.++|-.+|+..... ...+-+|. ..|..+.+..++.++++.+..| .-|+++|..+|+.+.++... ...+..+++
T Consensus 158 ~GqvQi~dL~~~~~~~p~~I~AH~--s~Iacv~Ln~~Gt~vATaStkG-TLIRIFdt~~g~~l~E~RRG~d~A~iy~iaF 234 (346)
T KOG2111|consen 158 TGQVQIVDLASTKPNAPSIINAHD--SDIACVALNLQGTLVATASTKG-TLIRIFDTEDGTLLQELRRGVDRADIYCIAF 234 (346)
T ss_pred cceEEEEEhhhcCcCCceEEEccc--CceeEEEEcCCccEEEEeccCc-EEEEEEEcCCCcEeeeeecCCchheEEEEEe
Confidence 46788888866541 23343444 6688888887788999988887 56899999999887777543 456778899
Q ss_pred ccCCcEEEEEEecCCCCceEEEEECC
Q 004766 402 RREDSVVFISFTSFLIPGIVYQCNLK 427 (732)
Q Consensus 402 s~d~~~l~~~~ss~~~p~~~y~~d~~ 427 (732)
|+++..+.++ |.. .++..+.+.
T Consensus 235 Sp~~s~Lavs--SdK--gTlHiF~l~ 256 (346)
T KOG2111|consen 235 SPNSSWLAVS--SDK--GTLHIFSLR 256 (346)
T ss_pred CCCccEEEEE--cCC--CeEEEEEee
Confidence 9998766543 433 445555443
|
|
| >PF04083 Abhydro_lipase: Partial alpha/beta-hydrolase lipase region; InterPro: IPR006693 The alpha/beta hydrolase fold is common to several hydrolytic enzymes of widely differing phylogenetic origin and catalytic function | Back alignment and domain information |
|---|
Probab=91.01 E-value=0.9 Score=34.23 Aligned_cols=50 Identities=14% Similarity=0.150 Sum_probs=29.0
Q ss_pred CCceEEEEEEEccCCCeeEEEEEEEcCC--CCCCCCccEEEEEcCCCCccCCC
Q 004766 447 SEFHVHQVFVPSKDGSTKIPMFIVSKKN--IKLDGSHPCLLYGYGGFNISVTP 497 (732)
Q Consensus 447 ~~~~~~~~~~~s~dG~~~i~~~~~~p~~--~~~~~~~P~vv~~hG~~~~~~~~ 497 (732)
..|.+|...+++.|| .-+.++=+.++. ....++.|.|++.||-.+++..+
T Consensus 8 ~GY~~E~h~V~T~DG-YiL~l~RIp~~~~~~~~~~~k~pVll~HGL~~ss~~w 59 (63)
T PF04083_consen 8 HGYPCEEHEVTTEDG-YILTLHRIPPGKNSSNQNKKKPPVLLQHGLLQSSDDW 59 (63)
T ss_dssp TT---EEEEEE-TTS-EEEEEEEE-SBTTCTTTTTT--EEEEE--TT--GGGG
T ss_pred cCCCcEEEEEEeCCC-cEEEEEEccCCCCCcccCCCCCcEEEECCcccChHHH
Confidence 367889999999999 888887665554 23456789999999988876543
|
The core of each enzyme is similar: an alpha/beta sheet, not barrel, of eight beta-sheets connected by alpha-helices []. This entry represents the N-terminal part of an alpha/beta hydrolase domain found in a number of lipases.; GO: 0006629 lipid metabolic process; PDB: 1K8Q_B 1HLG_B. |
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.79 E-value=11 Score=41.49 Aligned_cols=112 Identities=13% Similarity=0.056 Sum_probs=58.4
Q ss_pred EEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCCCCcEEe
Q 004766 219 EFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKL 298 (732)
Q Consensus 219 ~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l 298 (732)
.|.+|+--+.... .-+-..++ .+..+..++||.+++-.++++. |.++|+... ++...+
T Consensus 194 ~lr~wDprt~~ki-mkLrGHTd---NVr~ll~~dDGt~~ls~sSDgt-----IrlWdLgqQ-------------rCl~T~ 251 (735)
T KOG0308|consen 194 DLRLWDPRTCKKI-MKLRGHTD---NVRVLLVNDDGTRLLSASSDGT-----IRLWDLGQQ-------------RCLATY 251 (735)
T ss_pred ceEEeccccccce-eeeecccc---ceEEEEEcCCCCeEeecCCCce-----EEeeecccc-------------ceeeeE
Confidence 4666776654321 11222222 3346778999999987665543 777787652 223333
Q ss_pred eecccceEEE-EEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEe
Q 004766 299 IDGFDAQYEV-IANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAV 358 (732)
Q Consensus 299 ~~~~~~~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~ 358 (732)
....+..+.. .+++=+++|+ ++....|++.|+.+....+.+..+ ++.+..+...
T Consensus 252 ~vH~e~VWaL~~~~sf~~vYs----G~rd~~i~~Tdl~n~~~~tlick~--daPv~~l~~~ 306 (735)
T KOG0308|consen 252 IVHKEGVWALQSSPSFTHVYS----GGRDGNIYRTDLRNPAKSTLICKE--DAPVLKLHLH 306 (735)
T ss_pred EeccCceEEEeeCCCcceEEe----cCCCCcEEecccCCchhheEeecC--CCchhhhhhc
Confidence 3333333331 2233345554 233457999999886533434333 2444444443
|
|
| >PF07519 Tannase: Tannase and feruloyl esterase; InterPro: IPR011118 This family includes fungal tannase [] and feruloyl esterase [, ] | Back alignment and domain information |
|---|
Probab=90.58 E-value=0.37 Score=52.99 Aligned_cols=73 Identities=11% Similarity=0.049 Sum_probs=53.7
Q ss_pred CeEEEEeeCCCCCCCchHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeCCCCCCCCCchHHHHHHHHHHHHHHHH
Q 004766 650 PSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAK 724 (732)
Q Consensus 650 ~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~ 724 (732)
-.+|+.||..|..||+..+..+++++.+..... ...-..=++|.+.||.+|..+.+.....+.+..+.+|.++
T Consensus 354 GKLI~~HG~aD~~I~p~~ti~YY~~V~~~~g~~--~~~v~dF~RlF~vPGm~HC~gG~g~~~~d~l~aL~~WVE~ 426 (474)
T PF07519_consen 354 GKLILYHGWADPLIPPQGTIDYYERVVARMGGA--LADVDDFYRLFMVPGMGHCGGGPGPDPFDALTALVDWVEN 426 (474)
T ss_pred CeEEEEecCCCCccCCCcHHHHHHHHHHhcccc--cccccceeEEEecCCCcccCCCCCCCCCCHHHHHHHHHhC
Confidence 589999999999999999999999998862100 0000123688899999998776533345777778888865
|
It also includes several bacterial homologues of unknown function. |
| >PRK13614 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=90.48 E-value=25 Score=39.53 Aligned_cols=173 Identities=11% Similarity=0.047 Sum_probs=85.6
Q ss_pred EEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcc
Q 004766 133 ALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTET 212 (732)
Q Consensus 133 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~ 212 (732)
.+..+..|+||+.+|+.. +. ...+++... ++. ......+.....++|.++| ++..+. +.
T Consensus 344 ~~~s~avS~~g~~~A~~~---~~-~~~l~~~~~-g~~-~~~~~~g~~Lt~PS~d~~g-~vWtv~-~g------------- 402 (573)
T PRK13614 344 GPASPAESPVSQTVAFLN---GS-RTTLYTVSP-GQP-ARALTSGSTLTRPSFSPQD-WVWTAG-PG------------- 402 (573)
T ss_pred cccceeecCCCceEEEec---CC-CcEEEEecC-CCc-ceeeecCCCccCCcccCCC-CEEEee-CC-------------
Confidence 456789999999999982 22 246776654 222 2222222235778999888 565442 21
Q ss_pred cCCcccEEEEEEC-CCCCCC--CeEEEecCCC-CeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCc-cccc
Q 004766 213 DSNLYHEFYYHFL-GTKQSE--DILCWKDPEH-PKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGL-EGFK 287 (732)
Q Consensus 213 ~~~~~~~v~~~~l-gt~~~~--~~~v~~~~~~-~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~-~~~~ 287 (732)
.+..|.+..- +++... .+.....+.- ..-+..+.+|+||-++++....+. ...|++.-+.....+. ..+
T Consensus 403 ---~~~~vv~~~~~g~~~~~~~~~~~v~~~~l~g~~I~~lrvSrDG~R~Avi~~~~g--~~~V~va~V~R~~~G~P~~L- 476 (573)
T PRK13614 403 ---GNGRIVAYRPTGVAEGAQAPTVTLTADWLAGRTVKELRVSREGVRALVISEQNG--KSRVQVAGIVRNEDGTPREL- 476 (573)
T ss_pred ---CCceEEEEecCCCcccccccceeecccccCCCeeEEEEECCCccEEEEEEEeCC--ccEEEEEEEEeCCCCCeEEc-
Confidence 2224444332 222110 0001111111 123678999999999998875544 3446664332211110 000
Q ss_pred ccCCCCCcEEeeecccceEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCC
Q 004766 288 KRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPN 338 (732)
Q Consensus 288 ~~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~ 338 (732)
.....+.......-..|.. +..|++++.....+..++.+.+..+.
T Consensus 477 -----~~~~~~~~~~~~~sl~W~~-~~sl~V~~~~~~~~~~~~~v~v~~g~ 521 (573)
T PRK13614 477 -----TAPITLAADSDADTGAWVG-DSTVVVTKASATSNVVPELLSVDAGQ 521 (573)
T ss_pred -----cCceecccCCCcceeEEcC-CCEEEEEeccCCCcceEEEEEeCCCC
Confidence 0011111111111124765 45677776554445567777775443
|
|
| >COG4782 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=90.23 E-value=0.87 Score=46.74 Aligned_cols=111 Identities=14% Similarity=0.175 Sum_probs=64.8
Q ss_pred CccEEEEEcCCCCccCCCCcChhHHHHHHhcC--cEEEEEcccCCC-CCchhHHhcccccCCccHHHHHHHHHHHHHHcC
Q 004766 480 SHPCLLYGYGGFNISVTPSFSVSRTILMRHLG--AVFCIANIRGGG-EYGEEWHKGGALAKKQNCFDDFISASEYLISAG 556 (732)
Q Consensus 480 ~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G--~~v~~~~~rG~g-~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~ 556 (732)
..-++|++||....-.+.-| ...+.....| ++.+++-.+-+| -+|..+-+ +.-..+-.++...+++|.+..
T Consensus 115 ~k~vlvFvHGfNntf~dav~--R~aqI~~d~g~~~~pVvFSWPS~g~l~~Yn~Dr----eS~~~Sr~aLe~~lr~La~~~ 188 (377)
T COG4782 115 AKTVLVFVHGFNNTFEDAVY--RTAQIVHDSGNDGVPVVFSWPSRGSLLGYNYDR----ESTNYSRPALERLLRYLATDK 188 (377)
T ss_pred CCeEEEEEcccCCchhHHHH--HHHHHHhhcCCCcceEEEEcCCCCeeeecccch----hhhhhhHHHHHHHHHHHHhCC
Confidence 34589999996432111112 1234444444 334444444332 22222211 111234578888899998875
Q ss_pred CCCCCcEEEEecChhHHHHHHHHhh----C----CCeeeEEEEcCCcccc
Q 004766 557 YTQSRKLCIEGGSNGGLLVGACINQ----R----PDLFGCALAHVGVMDM 598 (732)
Q Consensus 557 ~~d~~~i~i~G~S~GG~l~~~~~~~----~----p~~f~a~v~~~p~~d~ 598 (732)
- -.+|.|+.||||.++++.++.| . +..|+=+|..+|=.|.
T Consensus 189 ~--~~~I~ilAHSMGtwl~~e~LrQLai~~~~~l~~ki~nViLAaPDiD~ 236 (377)
T COG4782 189 P--VKRIYLLAHSMGTWLLMEALRQLAIRADRPLPAKIKNVILAAPDIDV 236 (377)
T ss_pred C--CceEEEEEecchHHHHHHHHHHHhccCCcchhhhhhheEeeCCCCCh
Confidence 4 3689999999999999987664 1 2246677777776654
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=90.15 E-value=3.5 Score=41.97 Aligned_cols=133 Identities=10% Similarity=-0.001 Sum_probs=69.9
Q ss_pred ccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCCCCcE
Q 004766 217 YHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFV 296 (732)
Q Consensus 217 ~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~ 296 (732)
...|+++|+-++..-..++..-. ...++|+| ..+.+..++. + ..+|+.|..... .|..
T Consensus 209 DrsIvLyD~R~~~Pl~KVi~~mR-----TN~IswnP-eafnF~~a~E-D---~nlY~~DmR~l~------------~p~~ 266 (433)
T KOG0268|consen 209 DRSIVLYDLRQASPLKKVILTMR-----TNTICWNP-EAFNFVAANE-D---HNLYTYDMRNLS------------RPLN 266 (433)
T ss_pred CCceEEEecccCCccceeeeecc-----ccceecCc-cccceeeccc-c---ccceehhhhhhc------------ccch
Confidence 34578888766544333343221 13689999 5555444432 2 448888865421 0111
Q ss_pred Eeeeccc-ceEE-EEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecCCEEEEEEecCCeeE
Q 004766 297 KLIDGFD-AQYE-VIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYV 374 (732)
Q Consensus 297 ~l~~~~~-~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~~l~~~~~~~g~~~ 374 (732)
+-.+.. +... .|||-|+.|+-.+-+ ...+||- ...+. -+.+.....-..+-.+.|+-|...+++.++++.-+
T Consensus 267 -v~~dhvsAV~dVdfsptG~EfvsgsyD--ksIRIf~--~~~~~-SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvR 340 (433)
T KOG0268|consen 267 -VHKDHVSAVMDVDFSPTGQEFVSGSYD--KSIRIFP--VNHGH-SRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVR 340 (433)
T ss_pred -hhcccceeEEEeccCCCcchhcccccc--ceEEEee--cCCCc-chhhhhHhhhheeeEEEEeccccEEEecCCCccee
Confidence 111111 1111 378999887643322 1334444 44443 13333323235566788888778888888886444
Q ss_pred EEE
Q 004766 375 LQI 377 (732)
Q Consensus 375 l~~ 377 (732)
||.
T Consensus 341 lWk 343 (433)
T KOG0268|consen 341 LWK 343 (433)
T ss_pred eee
Confidence 443
|
|
| >PF01764 Lipase_3: Lipase (class 3); InterPro: IPR002921 Triglyceride lipases are lipolytic enzymes that hydrolyse ester linkages of triglycerides [] | Back alignment and domain information |
|---|
Probab=90.05 E-value=0.58 Score=41.96 Aligned_cols=38 Identities=24% Similarity=0.344 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhh
Q 004766 542 FDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQ 581 (732)
Q Consensus 542 ~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~ 581 (732)
.+.+...++.+.++.- +.+|.+.|||.||.++..++..
T Consensus 47 ~~~~~~~l~~~~~~~~--~~~i~itGHSLGGalA~l~a~~ 84 (140)
T PF01764_consen 47 YDQILDALKELVEKYP--DYSIVITGHSLGGALASLAAAD 84 (140)
T ss_dssp HHHHHHHHHHHHHHST--TSEEEEEEETHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccc--CccchhhccchHHHHHHHHHHh
Confidence 4556666666665533 4799999999999998877764
|
Lipases are widely distributed in animals, plants and prokaryotes. This family of lipases have been called Class 3 as they are not closely related to other lipase families.; GO: 0004806 triglyceride lipase activity, 0006629 lipid metabolic process; PDB: 1LGY_A 1DTE_A 1DT5_F 4DYH_B 1DU4_C 4EA6_B 1GT6_B 1EIN_A 1DT3_A 1TIB_A .... |
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=90.03 E-value=0.62 Score=51.32 Aligned_cols=102 Identities=16% Similarity=0.121 Sum_probs=59.0
Q ss_pred CCEEEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceeccccc-ceeeeeEEEEeCCcEEEEEEecCCCCCCCCCC
Q 004766 130 GTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALS-WFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDA 208 (732)
Q Consensus 130 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~ 208 (732)
+.+.+...++||||++++ .|.|..++.|||+.-|+..++... .+....+.+.|-. .|.-.
T Consensus 153 ~~~vv~~l~lsP~Gr~v~-----~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e-~Lla~------------- 213 (825)
T KOG0267|consen 153 HTRVVDVLRLSPDGRWVA-----SGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLE-VLLAP------------- 213 (825)
T ss_pred CcceeEEEeecCCCceee-----ccCCcceeeeecccccccccccccccccccccccCchh-hhhcc-------------
Confidence 345577889999999988 445567999999998987765431 1222344444432 11110
Q ss_pred CCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEE
Q 004766 209 GTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVM 259 (732)
Q Consensus 209 ~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~ 259 (732)
......+.+|++.+-+ ++-....+..-+.+..|+|||+.++-
T Consensus 214 -----Gs~d~tv~f~dletfe----~I~s~~~~~~~v~~~~fn~~~~~~~~ 255 (825)
T KOG0267|consen 214 -----GSSDRTVRFWDLETFE----VISSGKPETDGVRSLAFNPDGKIVLS 255 (825)
T ss_pred -----CCCCceeeeeccceeE----EeeccCCccCCceeeeecCCceeeec
Confidence 1223456777766421 22222222223456788999987643
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=90.03 E-value=30 Score=37.10 Aligned_cols=92 Identities=8% Similarity=0.015 Sum_probs=56.3
Q ss_pred EEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecCCEEEEEEecCCeeEEEEEeCCCCceee
Q 004766 308 VIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLH 387 (732)
Q Consensus 308 ~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~~l~~~~~~~g~~~l~~~d~~~g~~~~ 387 (732)
.|.|.| .+++-+. .++.+++|.++.. .+.-+.++..|..+..++++..++..+.|+.--||+++.+ |....
T Consensus 414 ~fhpsg-~va~Gt~----~G~w~V~d~e~~~---lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~-g~~y~ 484 (626)
T KOG2106|consen 414 DFHPSG-VVAVGTA----TGRWFVLDTETQD---LVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSAN-GRKYS 484 (626)
T ss_pred eccCcc-eEEEeec----cceEEEEecccce---eEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCC-CcEEE
Confidence 477877 6665433 3578888987744 2222333577888999987777777788854445555543 54333
Q ss_pred eccccc-ceeeEeecccCCcEE
Q 004766 388 QLPIEI-GSVNAISARREDSVV 408 (732)
Q Consensus 388 ~l~~~~-g~v~~~~~s~d~~~l 408 (732)
++-... ..+..+++|.|++.+
T Consensus 485 r~~k~~gs~ithLDwS~Ds~~~ 506 (626)
T KOG2106|consen 485 RVGKCSGSPITHLDWSSDSQFL 506 (626)
T ss_pred EeeeecCceeEEeeecCCCceE
Confidence 332222 235567888888744
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.87 E-value=4.7 Score=44.34 Aligned_cols=189 Identities=11% Similarity=0.076 Sum_probs=93.5
Q ss_pred eeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEE
Q 004766 180 FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVM 259 (732)
Q Consensus 180 ~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~ 259 (732)
...+++.|||+.|+... ..++++++...+.--. .+ ..+...+.-++||.||+..+-
T Consensus 15 i~d~afkPDGsqL~lAA--------------------g~rlliyD~ndG~llq-tL---KgHKDtVycVAys~dGkrFAS 70 (1081)
T KOG1538|consen 15 INDIAFKPDGTQLILAA--------------------GSRLLVYDTSDGTLLQ-PL---KGHKDTVYCVAYAKDGKRFAS 70 (1081)
T ss_pred hheeEECCCCceEEEec--------------------CCEEEEEeCCCccccc-cc---ccccceEEEEEEccCCceecc
Confidence 47899999999999874 2368888876553211 11 122234567999999998753
Q ss_pred EEecCCcceEEEEEEeCCCCCCCcccccccCCCCCcEEeeecccceEE--EEEecCCeEEEEeCCCCCCceEEEEeCCCC
Q 004766 260 CIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYE--VIANDDTVFTFLTNKDAPKYKIIRVDLKEP 337 (732)
Q Consensus 260 ~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~ 337 (732)
.+.+ .-+.++...- .+. |.-.....+. .|.|-...|+-. .. ..+.+|..+-
T Consensus 71 G~aD-----K~VI~W~~kl--EG~--------------LkYSH~D~IQCMsFNP~~h~LasC-sL--sdFglWS~~q--- 123 (1081)
T KOG1538|consen 71 GSAD-----KSVIIWTSKL--EGI--------------LKYSHNDAIQCMSFNPITHQLASC-SL--SDFGLWSPEQ--- 123 (1081)
T ss_pred CCCc-----eeEEEecccc--cce--------------eeeccCCeeeEeecCchHHHhhhc-ch--hhccccChhh---
Confidence 3221 2344443211 010 1100001111 233322222211 11 1233443321
Q ss_pred CCceEeccCCCCCceeEEEEecCCEEEEEEecCCeeEEEEEeCCCCceeeecccccc---eeeEeecccC---CcEEEEE
Q 004766 338 NDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIG---SVNAISARRE---DSVVFIS 411 (732)
Q Consensus 338 ~~~~~l~~~~~~~~l~~~~~~~~~~l~~~~~~~g~~~l~~~d~~~g~~~~~l~~~~g---~v~~~~~s~d---~~~l~~~ 411 (732)
+.+..+.....+.+.+|..|+.+++...-+| .|.+.+. +|+....|..|.| .+.++.++|. |..=.+.
T Consensus 124 ---K~V~K~kss~R~~~CsWtnDGqylalG~~nG--TIsiRNk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~a 197 (1081)
T KOG1538|consen 124 ---KSVSKHKSSSRIICCSWTNDGQYLALGMFNG--TISIRNK-NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILA 197 (1081)
T ss_pred ---hhHHhhhhheeEEEeeecCCCcEEEEeccCc--eEEeecC-CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEE
Confidence 1222333234567788998777777776665 5555554 4776556666532 3445554443 2222234
Q ss_pred EecCCCCceEEEEE
Q 004766 412 FTSFLIPGIVYQCN 425 (732)
Q Consensus 412 ~ss~~~p~~~y~~d 425 (732)
...+.+--..|.++
T Consensus 198 V~DW~qTLSFy~Ls 211 (1081)
T KOG1538|consen 198 VADWGQTLSFYQLS 211 (1081)
T ss_pred EEeccceeEEEEec
Confidence 44555544555443
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=89.68 E-value=31 Score=37.64 Aligned_cols=167 Identities=16% Similarity=0.188 Sum_probs=71.7
Q ss_pred EEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCccc
Q 004766 134 LIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETD 213 (732)
Q Consensus 134 ~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~ 213 (732)
...+++||+|+.++.. + +..+.|+- ..... ....+ ...+++|+++++ +++..
T Consensus 35 p~~ls~npngr~v~V~---g-~geY~iyt--~~~~r--~k~~G--~g~~~vw~~~n~-yAv~~----------------- 86 (443)
T PF04053_consen 35 PQSLSHNPNGRFVLVC---G-DGEYEIYT--ALAWR--NKAFG--SGLSFVWSSRNR-YAVLE----------------- 86 (443)
T ss_dssp -SEEEE-TTSSEEEEE---E-TTEEEEEE--TTTTE--EEEEE--E-SEEEE-TSSE-EEEE------------------
T ss_pred CeeEEECCCCCEEEEE---c-CCEEEEEE--ccCCc--ccccC--ceeEEEEecCcc-EEEEE-----------------
Confidence 4578899999999883 2 22366654 11111 11111 126799999766 33331
Q ss_pred CCcccEEEEE-ECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCC
Q 004766 214 SNLYHEFYYH-FLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGL 292 (732)
Q Consensus 214 ~~~~~~v~~~-~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~ 292 (732)
...+|..+ ++...... .+..+.. ...+ +. |..|..... ..|.++|.+++.
T Consensus 87 --~~~~I~I~kn~~~~~~k---~i~~~~~---~~~I-f~--G~LL~~~~~------~~i~~yDw~~~~------------ 137 (443)
T PF04053_consen 87 --SSSTIKIYKNFKNEVVK---SIKLPFS---VEKI-FG--GNLLGVKSS------DFICFYDWETGK------------ 137 (443)
T ss_dssp --TTS-EEEEETTEE-TT--------SS----EEEE-E---SSSEEEEET------TEEEEE-TTT--------------
T ss_pred --CCCeEEEEEcCccccce---EEcCCcc---cceE-Ec--CcEEEEECC------CCEEEEEhhHcc------------
Confidence 12234443 33211101 1111110 1111 11 776665532 238888988742
Q ss_pred CCcEEeeecccceEEEEEecCCeEEEEeCCCCCCceEEEEeCC-------CC-CCceEeccCCCCCceeEEEEecCCEEE
Q 004766 293 LPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLK-------EP-NDWFEVIPEAERDVLESATAVNLNQMI 364 (732)
Q Consensus 293 ~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~-------~~-~~~~~l~~~~~~~~l~~~~~~~~~~l~ 364 (732)
....+.-.......|+++|+.+.+++.. ..-|+..+++ .| +..-.++.+- ...+.+..|.. +.++
T Consensus 138 --~i~~i~v~~vk~V~Ws~~g~~val~t~~---~i~il~~~~~~~~~~~~~g~e~~f~~~~E~-~~~IkSg~W~~-d~fi 210 (443)
T PF04053_consen 138 --LIRRIDVSAVKYVIWSDDGELVALVTKD---SIYILKYNLEAVAAIPEEGVEDAFELIHEI-SERIKSGCWVE-DCFI 210 (443)
T ss_dssp --EEEEESS-E-EEEEE-TTSSEEEEE-S----SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE--S--SEEEEET-TEEE
T ss_pred --eeeEEecCCCcEEEEECCCCEEEEEeCC---eEEEEEecchhcccccccCchhceEEEEEe-cceeEEEEEEc-CEEE
Confidence 1111221112344699999999988753 3446666654 11 1122333331 25677888887 4333
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=89.66 E-value=29 Score=36.30 Aligned_cols=138 Identities=17% Similarity=0.134 Sum_probs=76.4
Q ss_pred EEEeEEECCCCcEEEEEEeccC---CceEEEEEEECCCCce-----ecccc-----------cceeeeeEEEEeCCcEEE
Q 004766 133 ALIKVSVSEDAKYLAYALSYSG---SDWATIKLMRIEDQIV-----EADAL-----------SWFKFSSIAWTHDSKGFF 193 (732)
Q Consensus 133 ~~~~~~~SPDG~~la~~~~~~G---~e~~~i~v~dl~~g~~-----~~~~~-----------~~~~~~~~~WspDg~~l~ 193 (732)
...++++.+||.++ +++..+ .....|+.++.. |.. ++... .+..+-+++++|||++|+
T Consensus 86 D~Egi~~~~~g~~~--is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~ 162 (326)
T PF13449_consen 86 DPEGIAVPPDGSFW--ISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLF 162 (326)
T ss_pred ChhHeEEecCCCEE--EEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEE
Confidence 34567777888643 233332 112478888877 542 22211 122356899999999887
Q ss_pred EEEecCCCCCCCCCCCCcc--cCCcccEEEEEECCCC-CCCCeEEEecCC-----CCeeEEEeEEecCCcEEEEEEecCC
Q 004766 194 YSRYPAPKEGKDMDAGTET--DSNLYHEFYYHFLGTK-QSEDILCWKDPE-----HPKYIFSGHVTEDGQYLVMCIEENC 265 (732)
Q Consensus 194 y~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~lgt~-~~~~~~v~~~~~-----~~~~~~~~~~SpDg~~l~~~~~~~~ 265 (732)
........ .++... ......+|+.++..++ ......+|.... ...-...+.+-+|++.|++......
T Consensus 163 ~~~E~~l~-----~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~ 237 (326)
T PF13449_consen 163 AAMESPLK-----QDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSP 237 (326)
T ss_pred EEECcccc-----CCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCC
Confidence 77533211 011110 1233467777777652 233445665432 1223457788899998777654221
Q ss_pred --cceEEEEEEeCCC
Q 004766 266 --DPVNKVYYCDLSA 278 (732)
Q Consensus 266 --~~~~~l~~~d~~~ 278 (732)
....+||.+++..
T Consensus 238 ~~~~~~ri~~v~l~~ 252 (326)
T PF13449_consen 238 GTGNYKRIYRVDLSD 252 (326)
T ss_pred CccceEEEEEEEccc
Confidence 3367888888765
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.51 E-value=14 Score=36.97 Aligned_cols=59 Identities=15% Similarity=0.158 Sum_probs=35.0
Q ss_pred ceEEEEeCCCCCCceEeccCCCCCceeEEEEecCCEEEEEEecCCeeEEEEEeCCCCceeeecc
Q 004766 327 YKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLP 390 (732)
Q Consensus 327 ~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~~l~~~~~~~g~~~l~~~d~~~g~~~~~l~ 390 (732)
-.+-.+|+.+.. ..|..-.-+..+.-+.++.+..++..--++ .++.++|+. |..+.+++
T Consensus 378 rTvKvWdLrNMR--splATIRtdS~~NRvavs~g~~iIAiPhDN--RqvRlfDln-G~RlaRlP 436 (481)
T KOG0300|consen 378 RTVKVWDLRNMR--SPLATIRTDSPANRVAVSKGHPIIAIPHDN--RQVRLFDLN-GNRLARLP 436 (481)
T ss_pred ceEEEeeecccc--CcceeeecCCccceeEeecCCceEEeccCC--ceEEEEecC-CCccccCC
Confidence 356677877654 222221223456667777745565554444 579999996 77666665
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=89.51 E-value=41 Score=37.82 Aligned_cols=61 Identities=15% Similarity=0.098 Sum_probs=38.1
Q ss_pred CceEEEEeCCCCC-CceEeccCCCCCceeEEEEecCCEEEEEEecCCeeEEEEEeCCCCceeeecccc
Q 004766 326 KYKIIRVDLKEPN-DWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIE 392 (732)
Q Consensus 326 ~~~l~~~d~~~~~-~~~~l~~~~~~~~l~~~~~~~~~~l~~~~~~~g~~~l~~~d~~~g~~~~~l~~~ 392 (732)
...|..+|+.+++ .|+. +.. .....+..... +.+++....+| .|+.+|.+||+.+-+..++
T Consensus 440 ~g~l~AiD~~tGk~~W~~--~~~-~p~~~~~l~t~-g~lvf~g~~~G--~l~a~D~~TGe~lw~~~~g 501 (527)
T TIGR03075 440 MGSLIAWDPITGKIVWEH--KED-FPLWGGVLATA-GDLVFYGTLEG--YFKAFDAKTGEELWKFKTG 501 (527)
T ss_pred ceeEEEEeCCCCceeeEe--cCC-CCCCCcceEEC-CcEEEEECCCC--eEEEEECCCCCEeEEEeCC
Confidence 4568999999886 3432 211 11233333344 45676665554 7999999999987666654
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.91 E-value=34 Score=36.10 Aligned_cols=98 Identities=13% Similarity=0.122 Sum_probs=59.2
Q ss_pred CCceEEEEEEECCCCceecccc-cceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCCcccEEEEEECCCC-CCC
Q 004766 154 GSDWATIKLMRIEDQIVEADAL-SWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTK-QSE 231 (732)
Q Consensus 154 G~e~~~i~v~dl~~g~~~~~~~-~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~-~~~ 231 (732)
|+...++.+||+++|++..... .+..+..+.|.|-.-.++.+. .+..+|.+.+.... ...
T Consensus 262 gsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsG------------------s~D~~V~l~D~R~~~~s~ 323 (463)
T KOG0270|consen 262 GSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSG------------------SYDGTVALKDCRDPSNSG 323 (463)
T ss_pred cCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEec------------------cccceEEeeeccCccccC
Confidence 4556899999999999643222 222458899999876666652 23445666665431 111
Q ss_pred CeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCC
Q 004766 232 DILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSA 278 (732)
Q Consensus 232 ~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~ 278 (732)
...-+. +-+..+.|.|-....++++.+. ..||.+|+..
T Consensus 324 ~~wk~~-----g~VEkv~w~~~se~~f~~~tdd----G~v~~~D~R~ 361 (463)
T KOG0270|consen 324 KEWKFD-----GEVEKVAWDPHSENSFFVSTDD----GTVYYFDIRN 361 (463)
T ss_pred ceEEec-----cceEEEEecCCCceeEEEecCC----ceEEeeecCC
Confidence 111111 1234678888888777776433 3488888765
|
|
| >COG1075 LipA Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.81 E-value=1.3 Score=46.56 Aligned_cols=97 Identities=12% Similarity=0.041 Sum_probs=56.2
Q ss_pred EEEEEcCCCCccCCCCcChhHHHHHHhcCcE---EEEEcccCCCCCchhHHhcccccCCccHHHHHHHHHHHHHHcCCCC
Q 004766 483 CLLYGYGGFNISVTPSFSVSRTILMRHLGAV---FCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQ 559 (732)
Q Consensus 483 ~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~---v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d 559 (732)
.++++||.... ...|.+ +..++...|+. +..+.+.+...-+. ....-+-+.+-++...... -
T Consensus 61 pivlVhG~~~~--~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~----------~~~~~~ql~~~V~~~l~~~--g 125 (336)
T COG1075 61 PIVLVHGLGGG--YGNFLP-LDYRLAILGWLTNGVYAFELSGGDGTYS----------LAVRGEQLFAYVDEVLAKT--G 125 (336)
T ss_pred eEEEEccCcCC--cchhhh-hhhhhcchHHHhcccccccccccCCCcc----------ccccHHHHHHHHHHHHhhc--C
Confidence 68889996222 223332 23445556666 66666665411111 0111223333344433332 2
Q ss_pred CCcEEEEecChhHHHHHHHHhhCC--CeeeEEEEcCC
Q 004766 560 SRKLCIEGGSNGGLLVGACINQRP--DLFGCALAHVG 594 (732)
Q Consensus 560 ~~~i~i~G~S~GG~l~~~~~~~~p--~~f~a~v~~~p 594 (732)
..++.+.|||+||.++..++...+ .+.+.++...+
T Consensus 126 a~~v~LigHS~GG~~~ry~~~~~~~~~~V~~~~tl~t 162 (336)
T COG1075 126 AKKVNLIGHSMGGLDSRYYLGVLGGANRVASVVTLGT 162 (336)
T ss_pred CCceEEEeecccchhhHHHHhhcCccceEEEEEEecc
Confidence 379999999999999998888877 67777776544
|
|
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=88.07 E-value=11 Score=36.34 Aligned_cols=61 Identities=23% Similarity=0.293 Sum_probs=35.3
Q ss_pred EEeEEECCCCcEEEEEEeccCCc----eEEEEEEECCCCceec-ccccceeeeeEEEEeCCcEEEEEE
Q 004766 134 LIKVSVSEDAKYLAYALSYSGSD----WATIKLMRIEDQIVEA-DALSWFKFSSIAWTHDSKGFFYSR 196 (732)
Q Consensus 134 ~~~~~~SPDG~~la~~~~~~G~e----~~~i~v~dl~~g~~~~-~~~~~~~~~~~~WspDg~~l~y~~ 196 (732)
+..-.++||||+.+=+....|.+ ...||.|-+ ++++-. -.--++ ..+++|+-|-|.+||+-
T Consensus 111 ~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~-~h~v~~i~~~v~I-sNgl~Wd~d~K~fY~iD 176 (310)
T KOG4499|consen 111 LNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLA-GHQVELIWNCVGI-SNGLAWDSDAKKFYYID 176 (310)
T ss_pred cccCccCCCCceeeeeeccccccccccccEEEEecc-CCCceeeehhccC-CccccccccCcEEEEEc
Confidence 44667899999965555444432 135665544 333111 000111 25799999999999973
|
|
| >cd00741 Lipase Lipase | Back alignment and domain information |
|---|
Probab=87.93 E-value=0.86 Score=41.67 Aligned_cols=25 Identities=28% Similarity=0.307 Sum_probs=21.0
Q ss_pred CCCcEEEEecChhHHHHHHHHhhCC
Q 004766 559 QSRKLCIEGGSNGGLLVGACINQRP 583 (732)
Q Consensus 559 d~~~i~i~G~S~GG~l~~~~~~~~p 583 (732)
...+|.+.|||+||.++..++.+..
T Consensus 26 p~~~i~v~GHSlGg~lA~l~a~~~~ 50 (153)
T cd00741 26 PDYKIHVTGHSLGGALAGLAGLDLR 50 (153)
T ss_pred CCCeEEEEEcCHHHHHHHHHHHHHH
Confidence 3579999999999999998877643
|
Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation", the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.75 E-value=14 Score=41.13 Aligned_cols=116 Identities=12% Similarity=0.031 Sum_probs=68.6
Q ss_pred CCCEEEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecccccce---eeeeEEEEeCCcEEEEEEecCCCCCCC
Q 004766 129 DGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWF---KFSSIAWTHDSKGFFYSRYPAPKEGKD 205 (732)
Q Consensus 129 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~~~~---~~~~~~WspDg~~l~y~~~~~~~~~~~ 205 (732)
++..++..+.|....++|- ++|.+ .-|.||-+-.|....+-+.+- -..+.+|..||+.|.++-.++.-
T Consensus 69 GH~~sV~vvTWNe~~QKLT-tSDt~----GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGav---- 139 (1189)
T KOG2041|consen 69 GHNASVMVVTWNENNQKLT-TSDTS----GLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAV---- 139 (1189)
T ss_pred cCcceEEEEEecccccccc-ccCCC----ceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCE----
Confidence 4567888899998888774 33333 368888888777443322111 14789999999999988644310
Q ss_pred CCCCCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCC
Q 004766 206 MDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSA 278 (732)
Q Consensus 206 ~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~ 278 (732)
...+-.+.+||--++. ......+.||+|.+.++|.... .+..+.|-++
T Consensus 140 -----IVGsvdGNRIwgKeLk---------------g~~l~hv~ws~D~~~~Lf~~an-----ge~hlydnqg 187 (1189)
T KOG2041|consen 140 -----IVGSVDGNRIWGKELK---------------GQLLAHVLWSEDLEQALFKKAN-----GETHLYDNQG 187 (1189)
T ss_pred -----EEEeeccceecchhcc---------------hheccceeecccHHHHHhhhcC-----CcEEEecccc
Confidence 0001123344422221 1122467899999999886543 3355555443
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=87.57 E-value=43 Score=37.74 Aligned_cols=116 Identities=9% Similarity=0.013 Sum_probs=61.4
Q ss_pred CCeEEEEeCCCC---CCceEEEEeCCCCCCceEeccCCCCCceeEEEEecCCEEEEEEecCC------eeEEEEEeCCCC
Q 004766 313 DTVFTFLTNKDA---PKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDV------KYVLQIRDLKNG 383 (732)
Q Consensus 313 g~~l~~~s~~~~---~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~~l~~~~~~~g------~~~l~~~d~~~g 383 (732)
++.+|++..... ....++++|+.+.. |+.+.+-.....-......+ +.+|+....+. ...++++|+.++
T Consensus 389 ~~~iYv~GG~~~~~~~~~~v~~yd~~t~~-W~~~~~~p~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~v~~yd~~~~ 466 (534)
T PHA03098 389 NNLIYVIGGISKNDELLKTVECFSLNTNK-WSKGSPLPISHYGGCAIYHD-GKIYVIGGISYIDNIKVYNIVESYNPVTN 466 (534)
T ss_pred CCEEEEECCcCCCCcccceEEEEeCCCCe-eeecCCCCccccCceEEEEC-CEEEEECCccCCCCCcccceEEEecCCCC
Confidence 567888765321 12468899988776 87664422111112223333 78877764322 235899999876
Q ss_pred ceeeecc-c--ccceeeEeecccCCcEEEEEEecCCC---CceEEEEECCCCCCceEEEE
Q 004766 384 SLLHQLP-I--EIGSVNAISARREDSVVFISFTSFLI---PGIVYQCNLKTETPEMKIFR 437 (732)
Q Consensus 384 ~~~~~l~-~--~~g~v~~~~~s~d~~~l~~~~ss~~~---p~~~y~~d~~~~~~~~~~l~ 437 (732)
+. ..+. . +........ .+ +.+++ +.+... -..++.||+.+.+ ++.+.
T Consensus 467 ~W-~~~~~~~~~r~~~~~~~--~~-~~iyv-~GG~~~~~~~~~v~~yd~~~~~--W~~~~ 519 (534)
T PHA03098 467 KW-TELSSLNFPRINASLCI--FN-NKIYV-VGGDKYEYYINEIEVYDDKTNT--WTLFC 519 (534)
T ss_pred ce-eeCCCCCcccccceEEE--EC-CEEEE-EcCCcCCcccceeEEEeCCCCE--EEecC
Confidence 64 4443 1 211111111 23 34543 333221 3578999988773 55443
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.18 E-value=32 Score=33.88 Aligned_cols=149 Identities=9% Similarity=0.054 Sum_probs=76.9
Q ss_pred EEEEEEECCCCceec-ccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCCcccEEEEEECCCCCCCCeEEE
Q 004766 158 ATIKLMRIEDQIVEA-DALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCW 236 (732)
Q Consensus 158 ~~i~v~dl~~g~~~~-~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~ 236 (732)
.++.+++++.+.... .........+.+.|||+++...+. ...+|+++.+.....-.+-++
T Consensus 138 ht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vg-------------------ds~~Vf~y~id~~sey~~~~~ 198 (344)
T KOG4532|consen 138 HTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVG-------------------DSRRVFRYAIDDESEYIENIY 198 (344)
T ss_pred cceeEEEEecCcccceeeccccceeeeEEcCCCceEEEec-------------------CCCcceEEEeCCccceeeeeE
Confidence 467777776554111 111111236788999999888762 344688888875543333334
Q ss_pred ecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCCCCcEEeee---cccc--eEEEEEe
Q 004766 237 KDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLID---GFDA--QYEVIAN 311 (732)
Q Consensus 237 ~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~--~~~~~s~ 311 (732)
+.+..+.- ...+||......+....++. +.++|+..-. .+...... ...+ ....|++
T Consensus 199 ~a~t~D~g-F~~S~s~~~~~FAv~~Qdg~-----~~I~DVR~~~------------tpm~~~sstrp~hnGa~R~c~Fsl 260 (344)
T KOG4532|consen 199 EAPTSDHG-FYNSFSENDLQFAVVFQDGT-----CAIYDVRNMA------------TPMAEISSTRPHHNGAFRVCRFSL 260 (344)
T ss_pred ecccCCCc-eeeeeccCcceEEEEecCCc-----EEEEEecccc------------cchhhhcccCCCCCCceEEEEecC
Confidence 33322211 24677777766666554433 5566654421 11111111 1111 1234776
Q ss_pred cC-CeEEEEeCCCCCCceEEEEeCCCCCCceEeccC
Q 004766 312 DD-TVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPE 346 (732)
Q Consensus 312 dg-~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~ 346 (732)
.| ..|+|.+.. ...+-++|+.+....+.+++.
T Consensus 261 ~g~lDLLf~sEh---fs~~hv~D~R~~~~~q~I~i~ 293 (344)
T KOG4532|consen 261 YGLLDLLFISEH---FSRVHVVDTRNYVNHQVIVIP 293 (344)
T ss_pred CCcceEEEEecC---cceEEEEEcccCceeeEEecC
Confidence 54 356666653 346888898887644444443
|
|
| >PF02450 LCAT: Lecithin:cholesterol acyltransferase; InterPro: IPR003386 Lecithin:cholesterol acyltransferase (LACT), also known as phosphatidylcholine-sterol acyltransferase (2 | Back alignment and domain information |
|---|
Probab=86.66 E-value=1.1 Score=48.16 Aligned_cols=87 Identities=15% Similarity=0.163 Sum_probs=51.4
Q ss_pred CcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHH
Q 004766 498 SFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGA 577 (732)
Q Consensus 498 ~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~ 577 (732)
.|.. +...|.+.||..-. +++| .+.+|+.+.. .....+..+...|+.+.+.. ..+|.|+||||||+++..
T Consensus 66 ~~~~-li~~L~~~GY~~~~-~l~~---~pYDWR~~~~--~~~~~~~~lk~~ie~~~~~~---~~kv~li~HSmGgl~~~~ 135 (389)
T PF02450_consen 66 YFAK-LIENLEKLGYDRGK-DLFA---APYDWRLSPA--ERDEYFTKLKQLIEEAYKKN---GKKVVLIAHSMGGLVARY 135 (389)
T ss_pred hHHH-HHHHHHhcCcccCC-EEEE---Eeechhhchh--hHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCCCchHHHH
Confidence 3444 34445657875421 2222 2234554422 12234566666666665543 579999999999999999
Q ss_pred HHhhCCC------eeeEEEEcCC
Q 004766 578 CINQRPD------LFGCALAHVG 594 (732)
Q Consensus 578 ~~~~~p~------~f~a~v~~~p 594 (732)
++...+. .+++.|+.++
T Consensus 136 fl~~~~~~~W~~~~i~~~i~i~~ 158 (389)
T PF02450_consen 136 FLQWMPQEEWKDKYIKRFISIGT 158 (389)
T ss_pred HHHhccchhhHHhhhhEEEEeCC
Confidence 8887643 3566665544
|
3.1.43 from EC), is involved in extracellular metabolism of plasma lipoproteins, including cholesterol. It esterifies the free cholesterol transported in plasma lipoproteins, and is activated by apolipoprotein A-I. Defects in LACT cause Norum and Fish eye diseases. This family also includes phospholipid:diacylglycerol acyltransferase (PDAT)(2.3.1.158 from EC), which is involved in triacylglycerol formation by an acyl-CoA independent pathway. The enzyme specifically transfers acyl groups from the sn-2 position of a phospholipid to diacylglycerol, thus forming an sn-1-lysophospholipid [].; GO: 0008374 O-acyltransferase activity, 0006629 lipid metabolic process |
| >PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4 | Back alignment and domain information |
|---|
Probab=86.51 E-value=8.4 Score=31.34 Aligned_cols=59 Identities=14% Similarity=0.123 Sum_probs=34.9
Q ss_pred eEEECCCCcEEEEEEec-------------cCCceEEEEEEECCCCce--ecccccceeeeeEEEEeCCcEEEEEE
Q 004766 136 KVSVSEDAKYLAYALSY-------------SGSDWATIKLMRIEDQIV--EADALSWFKFSSIAWTHDSKGFFYSR 196 (732)
Q Consensus 136 ~~~~SPDG~~la~~~~~-------------~G~e~~~i~v~dl~~g~~--~~~~~~~~~~~~~~WspDg~~l~y~~ 196 (732)
++.+++++..|.|+-+. .+.....|..+|..|++. +.+.+.- ..+++.|+|++.|+++.
T Consensus 2 dldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~~L~f--pNGVals~d~~~vlv~E 75 (89)
T PF03088_consen 2 DLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLDGLYF--PNGVALSPDESFVLVAE 75 (89)
T ss_dssp EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEEEESS--EEEEEE-TTSSEEEEEE
T ss_pred ceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehhCCCc--cCeEEEcCCCCEEEEEe
Confidence 45567775556666431 133346899999999983 3333322 37899999999999874
|
3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B. |
| >KOG2541 consensus Palmitoyl protein thioesterase [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=86.29 E-value=14 Score=36.44 Aligned_cols=88 Identities=19% Similarity=0.122 Sum_probs=48.6
Q ss_pred ccEEEEEcCCCCccCCCCcChhHHHHHHh-cCcEEEEEcccCCCCCchhHHhcccccCCccHHHHHHHHHHHHHHcCCCC
Q 004766 481 HPCLLYGYGGFNISVTPSFSVSRTILMRH-LGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQ 559 (732)
Q Consensus 481 ~P~vv~~hG~~~~~~~~~~~~~~~~~l~~-~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d 559 (732)
.| +|..||-...+....+. .+.+++.+ -|..|.+.++--| -...|. . ...+....+...+++.---
T Consensus 24 ~P-~ii~HGigd~c~~~~~~-~~~q~l~~~~g~~v~~leig~g--~~~s~l--------~-pl~~Qv~~~ce~v~~m~~l 90 (296)
T KOG2541|consen 24 VP-VIVWHGIGDSCSSLSMA-NLTQLLEELPGSPVYCLEIGDG--IKDSSL--------M-PLWEQVDVACEKVKQMPEL 90 (296)
T ss_pred CC-EEEEeccCcccccchHH-HHHHHHHhCCCCeeEEEEecCC--cchhhh--------c-cHHHHHHHHHHHHhcchhc
Confidence 45 56679976665543333 34455543 4777777776322 111121 1 1234444444333343334
Q ss_pred CCcEEEEecChhHHHHHHHHhh
Q 004766 560 SRKLCIEGGSNGGLLVGACINQ 581 (732)
Q Consensus 560 ~~~i~i~G~S~GG~l~~~~~~~ 581 (732)
++-.-|+|.|.||+++=+++..
T Consensus 91 sqGynivg~SQGglv~Raliq~ 112 (296)
T KOG2541|consen 91 SQGYNIVGYSQGGLVARALIQF 112 (296)
T ss_pred cCceEEEEEccccHHHHHHHHh
Confidence 5678999999999777666554
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=86.04 E-value=40 Score=33.87 Aligned_cols=149 Identities=11% Similarity=0.054 Sum_probs=81.5
Q ss_pred eEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCCCCcEEeeecccceE-EEEEecCCeEEEEeCC
Q 004766 244 YIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQY-EVIANDDTVFTFLTNK 322 (732)
Q Consensus 244 ~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~s~dg~~l~~~s~~ 322 (732)
.+.++.+||.+..|++.++++. +.+++..... .+.......+-. ..|.+ ..+++. .
T Consensus 15 ~IS~v~f~~~~~~LLvssWDgs-----lrlYdv~~~~--------------l~~~~~~~~plL~c~F~d-~~~~~~-G-- 71 (323)
T KOG1036|consen 15 GISSVKFSPSSSDLLVSSWDGS-----LRLYDVPANS--------------LKLKFKHGAPLLDCAFAD-ESTIVT-G-- 71 (323)
T ss_pred ceeeEEEcCcCCcEEEEeccCc-----EEEEeccchh--------------hhhheecCCceeeeeccC-CceEEE-e--
Confidence 4568899999999999887654 5566655421 111111111111 12433 334443 2
Q ss_pred CCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecCCEEEEEEecCCeeEEEEEeCCCCceeeecccc-cceeeEeec
Q 004766 323 DAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIE-IGSVNAISA 401 (732)
Q Consensus 323 ~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~~l~~~~~~~g~~~l~~~d~~~g~~~~~l~~~-~g~v~~~~~ 401 (732)
+-.+.|-++|+.++.. ..+-.+. ..+..+........+++..-| ..|.+||... +. ...++. ...|..++.
T Consensus 72 -~~dg~vr~~Dln~~~~-~~igth~--~~i~ci~~~~~~~~vIsgsWD--~~ik~wD~R~-~~-~~~~~d~~kkVy~~~v 143 (323)
T KOG1036|consen 72 -GLDGQVRRYDLNTGNE-DQIGTHD--EGIRCIEYSYEVGCVISGSWD--KTIKFWDPRN-KV-VVGTFDQGKKVYCMDV 143 (323)
T ss_pred -ccCceEEEEEecCCcc-eeeccCC--CceEEEEeeccCCeEEEcccC--ccEEEEeccc-cc-cccccccCceEEEEec
Confidence 2345799999988762 2232333 556667666434455666655 4788999762 22 222222 234444443
Q ss_pred ccCCcEEEEEEecCCCCceEEEEECCCC
Q 004766 402 RREDSVVFISFTSFLIPGIVYQCNLKTE 429 (732)
Q Consensus 402 s~d~~~l~~~~ss~~~p~~~y~~d~~~~ 429 (732)
.++.|++..+. ..+..||+..-
T Consensus 144 --~g~~LvVg~~~----r~v~iyDLRn~ 165 (323)
T KOG1036|consen 144 --SGNRLVVGTSD----RKVLIYDLRNL 165 (323)
T ss_pred --cCCEEEEeecC----ceEEEEEcccc
Confidence 46667764433 46788887654
|
|
| >PF11288 DUF3089: Protein of unknown function (DUF3089); InterPro: IPR021440 This family of proteins has no known function | Back alignment and domain information |
|---|
Probab=85.51 E-value=2 Score=41.09 Aligned_cols=87 Identities=16% Similarity=0.148 Sum_probs=53.7
Q ss_pred cCcEEEEEcccCCCCCchh-HHhcccccCCccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhC----C-
Q 004766 510 LGAVFCIANIRGGGEYGEE-WHKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQR----P- 583 (732)
Q Consensus 510 ~G~~v~~~~~rG~g~~g~~-~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~----p- 583 (732)
.-..|++|-||=..-+... -..........-.+.|+.+|-++.+++- -+-..+.|.|||.|+.+...++.++ |
T Consensus 44 ~~~~vfAP~YRQatl~~~~~~~~~~~~~a~~~ay~DV~~AF~~yL~~~-n~GRPfILaGHSQGs~~l~~LL~e~~~~~pl 122 (207)
T PF11288_consen 44 GVCNVFAPRYRQATLYAFLDTDREDAEKAFDLAYSDVRAAFDYYLANY-NNGRPFILAGHSQGSMHLLRLLKEEIAGDPL 122 (207)
T ss_pred cCCccccChhhcchhhhhhccCcchhHHHHHhhHHHHHHHHHHHHHhc-CCCCCEEEEEeChHHHHHHHHHHHHhcCchH
Confidence 4456777777743211110 0000011112345899999999877653 2335799999999999999998864 2
Q ss_pred --CeeeEEEEcCCccc
Q 004766 584 --DLFGCALAHVGVMD 597 (732)
Q Consensus 584 --~~f~a~v~~~p~~d 597 (732)
.+.+|.+.+.++..
T Consensus 123 ~~rLVAAYliG~~v~~ 138 (207)
T PF11288_consen 123 RKRLVAAYLIGYPVTV 138 (207)
T ss_pred HhhhheeeecCccccH
Confidence 25667777777654
|
|
| >PRK13613 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=84.72 E-value=20 Score=40.77 Aligned_cols=130 Identities=15% Similarity=0.236 Sum_probs=69.5
Q ss_pred hcCCCCCCCcEEeCCEEEEEEEcCCCCeeEEEEEeCCCCCceEEeCCCCcCCCCCEEEEeEEECCCCcEEEEEEeccCCc
Q 004766 77 LFDSPRYDAPFKRGNKYFYFHNTGLQPQSVLYVQDSLDAKAKVLLDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSGSD 156 (732)
Q Consensus 77 ~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~l~~r~~~~~~~~~l~D~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e 156 (732)
.+.....+.|+++..-+.+.-.........+..... +|+. +-++...+. + ..|..+++|+||-++|++++.+|..
T Consensus 405 ~~~~~~Lt~PS~d~~g~vWtvd~~~~~~~vl~v~~~-~G~~-~~V~~~~l~--g-~~I~~lrvSrDG~RvAvv~~~~g~~ 479 (599)
T PRK13613 405 VTADGRLTSPSWDGRGDLWVVDRDPADPRLLWLLQG-DGEP-VEVRTPELD--G-HRVVAVRVARDGVRVALIVEKDGRR 479 (599)
T ss_pred eeccCcccCCcCcCCCCEEEecCCCCCceEEEEEcC-CCcE-EEeeccccC--C-CEeEEEEECCCccEEEEEEecCCCc
Confidence 345567899998654344444221111122443332 4443 224443332 2 3689999999999999998766654
Q ss_pred eEEEEEEEC---CCCc-eec----ccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCCcccEEEEEECCCC
Q 004766 157 WATIKLMRI---EDQI-VEA----DALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTK 228 (732)
Q Consensus 157 ~~~i~v~dl---~~g~-~~~----~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~ 228 (732)
+|+|--+ ..|. .+. .........+++|..|++ |+...... .....+|+..++..
T Consensus 480 --~v~va~V~R~~~G~~~l~~~~~l~~~l~~v~~~~W~~~~s-L~Vlg~~~---------------~~~~~v~~v~vdG~ 541 (599)
T PRK13613 480 --SLQIGRIVRDAKAVVSVEEFRSLAPELEDVTDMSWAGDSQ-LVVLGREE---------------GGVQQARYVQVDGS 541 (599)
T ss_pred --EEEEEEEEeCCCCcEEeeccEEeccCCCccceeEEcCCCE-EEEEeccC---------------CCCcceEEEecCCc
Confidence 3443322 2343 121 111111247899997765 55532111 12345888888754
Q ss_pred C
Q 004766 229 Q 229 (732)
Q Consensus 229 ~ 229 (732)
.
T Consensus 542 ~ 542 (599)
T PRK13613 542 T 542 (599)
T ss_pred C
Confidence 3
|
|
| >PF02089 Palm_thioest: Palmitoyl protein thioesterase; InterPro: IPR002472 Neuronal ceroid lipofuscinoses (NCL) represent a group of encephalopathies that occur in 1 in 12,500 children | Back alignment and domain information |
|---|
Probab=84.17 E-value=5.9 Score=39.75 Aligned_cols=31 Identities=23% Similarity=0.284 Sum_probs=21.0
Q ss_pred CcEEEEecChhHHHHHHHHhhCCC-eeeEEEE
Q 004766 561 RKLCIEGGSNGGLLVGACINQRPD-LFGCALA 591 (732)
Q Consensus 561 ~~i~i~G~S~GG~l~~~~~~~~p~-~f~a~v~ 591 (732)
+-+-++|+|.||++.=+++.+.|+ ..+-.|+
T Consensus 80 ~G~~~IGfSQGgl~lRa~vq~c~~~~V~nlIS 111 (279)
T PF02089_consen 80 NGFNAIGFSQGGLFLRAYVQRCNDPPVHNLIS 111 (279)
T ss_dssp T-EEEEEETCHHHHHHHHHHH-TSS-EEEEEE
T ss_pred cceeeeeeccccHHHHHHHHHCCCCCceeEEE
Confidence 468899999999888777777655 2444444
|
Mutations in the palmitoyl protein thioesterase gene causing infantile neuronal ceroid lipofuscinosis []. The most common mutation results in intracellular accumulation of the polypeptide and undetectable enzyme activity in the brain. Direct sequencing of cDNAs derived from brain RNA of INCL patients has shown a mis-sense transversion of A to T at nucleotide position 364, which results in substitution of Trp for Arg at position 122 in the protein - Arg 122 is immediately adjacent to a lipase consensus sequence that contains the putative active site Ser of PPT. The occurrence of this and two other independent mutations in the PPT gene strongly suggests that defects in this gene cause INCL.; GO: 0008474 palmitoyl-(protein) hydrolase activity, 0006464 protein modification process; PDB: 3GRO_B 1PJA_A 1EXW_A 1EH5_A 1EI9_A. |
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=83.91 E-value=42 Score=33.37 Aligned_cols=108 Identities=17% Similarity=0.112 Sum_probs=64.2
Q ss_pred EEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceE--eccCCCCCceeEEEEecCCEEEEEEecCCeeEEEEEeCCCCce
Q 004766 308 VIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFE--VIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSL 385 (732)
Q Consensus 308 ~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~--l~~~~~~~~l~~~~~~~~~~l~~~~~~~g~~~l~~~d~~~g~~ 385 (732)
...|||..++. + ..+ .|.++|.++.+ .++ |..+..+..++...+.+.+.|.|+....... ++|..++.
T Consensus 110 v~gpdg~~Wit--d--~~~-aI~R~dpkt~e-vt~f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yG---rLdPa~~~- 179 (353)
T COG4257 110 VVGPDGSAWIT--D--TGL-AIGRLDPKTLE-VTRFPLPLEHADANLETAVFDPWGNLWFTGQIGAYG---RLDPARNV- 179 (353)
T ss_pred EECCCCCeeEe--c--Ccc-eeEEecCcccc-eEEeecccccCCCcccceeeCCCccEEEeeccccce---ecCcccCc-
Confidence 46688876553 2 222 68888887765 222 2223335678888877767888887765444 45665443
Q ss_pred eeeccccc-ceeeEeecccCCcEEEEEEecCCCCceEEEEECCCC
Q 004766 386 LHQLPIEI-GSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTE 429 (732)
Q Consensus 386 ~~~l~~~~-g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~ 429 (732)
++....|. +.-+.+..++||. ++|+ |. .-..|-++|..++
T Consensus 180 i~vfpaPqG~gpyGi~atpdGs-vwya--sl-agnaiaridp~~~ 220 (353)
T COG4257 180 ISVFPAPQGGGPYGICATPDGS-VWYA--SL-AGNAIARIDPFAG 220 (353)
T ss_pred eeeeccCCCCCCcceEECCCCc-EEEE--ec-cccceEEcccccC
Confidence 35555553 3345667788987 4443 21 1245778888776
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.60 E-value=48 Score=32.73 Aligned_cols=125 Identities=10% Similarity=0.069 Sum_probs=66.1
Q ss_pred EEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCCCCcEEeeecccceE-EEEEecCCeEEEEeCCCC
Q 004766 246 FSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQY-EVIANDDTVFTFLTNKDA 324 (732)
Q Consensus 246 ~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~s~dg~~l~~~s~~~~ 324 (732)
.+.++|+|+++++.+.. ..+++++.++..... .....+....+..+ ..|+.....+++.+-
T Consensus 162 ns~~~snd~~~~~~Vgd-----s~~Vf~y~id~~sey----------~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Q--- 223 (344)
T KOG4532|consen 162 NSLHYSNDPSWGSSVGD-----SRRVFRYAIDDESEY----------IENIYEAPTSDHGFYNSFSENDLQFAVVFQ--- 223 (344)
T ss_pred eeeEEcCCCceEEEecC-----CCcceEEEeCCccce----------eeeeEecccCCCceeeeeccCcceEEEEec---
Confidence 47899999999987643 234555555431110 00112222233333 357766666665443
Q ss_pred CCceEEEEeCCCCCC-ceEecc--CCCCCceeEEEEecCC--EEEEEEecCCeeEEEEEeCCCCceeeeccc
Q 004766 325 PKYKIIRVDLKEPND-WFEVIP--EAERDVLESATAVNLN--QMIVSYLSDVKYVLQIRDLKNGSLLHQLPI 391 (732)
Q Consensus 325 ~~~~l~~~d~~~~~~-~~~l~~--~~~~~~l~~~~~~~~~--~l~~~~~~~g~~~l~~~d~~~g~~~~~l~~ 391 (732)
++.+..+|+..... ..+... +.....+....++..+ .|++.. .+.+.+.+.|+.+++..+.|..
T Consensus 224 -dg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~s--Ehfs~~hv~D~R~~~~~q~I~i 292 (344)
T KOG4532|consen 224 -DGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFIS--EHFSRVHVVDTRNYVNHQVIVI 292 (344)
T ss_pred -CCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEe--cCcceEEEEEcccCceeeEEec
Confidence 33577777754330 111111 1134567777777433 234333 3457888999988876555543
|
|
| >PF06259 Abhydrolase_8: Alpha/beta hydrolase; InterPro: IPR010427 This is a family of uncharacterised proteins found in Actinobacteria | Back alignment and domain information |
|---|
Probab=83.55 E-value=3 Score=38.93 Aligned_cols=38 Identities=21% Similarity=0.281 Sum_probs=27.7
Q ss_pred cHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhh
Q 004766 540 NCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQ 581 (732)
Q Consensus 540 ~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~ 581 (732)
..+.+|...++.. . ....++.++|||||..+++.++.+
T Consensus 92 ~~L~~f~~gl~a~---~-~~~~~~tv~GHSYGS~v~G~A~~~ 129 (177)
T PF06259_consen 92 PRLARFLDGLRAT---H-GPDAHLTVVGHSYGSTVVGLAAQQ 129 (177)
T ss_pred HHHHHHHHHhhhh---c-CCCCCEEEEEecchhHHHHHHhhh
Confidence 3455555555432 2 345799999999999999999887
|
Computational analysis suggests that they may belong to the alpha-beta hydrolase family of enzymes, as they are predicted to form the core secondary structures and catalytic machinery common to these proteins []. Genomic context suggests that they may function as lipases, controlling the concentration of their putative phospholipid substrates. |
| >PF03283 PAE: Pectinacetylesterase | Back alignment and domain information |
|---|
Probab=83.47 E-value=1.4 Score=46.39 Aligned_cols=38 Identities=21% Similarity=0.288 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHh
Q 004766 543 DDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACIN 580 (732)
Q Consensus 543 ~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~ 580 (732)
.-+.+++++|.++|+-++++|.+.|.|+||+-+..-+.
T Consensus 138 ~i~~avl~~l~~~gl~~a~~vlltG~SAGG~g~~~~~d 175 (361)
T PF03283_consen 138 RILRAVLDDLLSNGLPNAKQVLLTGCSAGGLGAILHAD 175 (361)
T ss_pred HHHHHHHHHHHHhcCcccceEEEeccChHHHHHHHHHH
Confidence 45788999999999999999999999999998776544
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=83.47 E-value=43 Score=34.86 Aligned_cols=74 Identities=18% Similarity=0.294 Sum_probs=45.0
Q ss_pred EEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEe-ccCCCCCceeEEEEecCCEEEEEEecCCeeEEEEEeCCCCcee
Q 004766 308 VIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEV-IPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLL 386 (732)
Q Consensus 308 ~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l-~~~~~~~~l~~~~~~~~~~l~~~~~~~g~~~l~~~d~~~g~~~ 386 (732)
.|+||+++ ++.++++. ..++-.++. .-.+..+ ..|. ..+..+++.+ ++++++..-| .+|++||..+|+.+
T Consensus 158 avS~D~~~-IitaDRDE-kIRvs~ypa--~f~IesfclGH~--eFVS~isl~~-~~~LlS~sGD--~tlr~Wd~~sgk~L 228 (390)
T KOG3914|consen 158 AVSPDDQF-IITADRDE-KIRVSRYPA--TFVIESFCLGHK--EFVSTISLTD-NYLLLSGSGD--KTLRLWDITSGKLL 228 (390)
T ss_pred eecCCCCE-EEEecCCc-eEEEEecCc--ccchhhhccccH--hheeeeeecc-CceeeecCCC--CcEEEEecccCCcc
Confidence 48998854 44566653 344444432 1111211 2343 5678888887 6776665544 68999999999876
Q ss_pred eecc
Q 004766 387 HQLP 390 (732)
Q Consensus 387 ~~l~ 390 (732)
..+.
T Consensus 229 ~t~d 232 (390)
T KOG3914|consen 229 DTCD 232 (390)
T ss_pred cccc
Confidence 5544
|
|
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=83.33 E-value=51 Score=32.81 Aligned_cols=226 Identities=12% Similarity=0.036 Sum_probs=104.4
Q ss_pred eEEECCCCcEEEEEEeccCCceEEEEEEECCCCcee----cccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCc
Q 004766 136 KVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVE----ADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTE 211 (732)
Q Consensus 136 ~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~----~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~ 211 (732)
.+..-|||. ++..+. | .-|.-+|-++.+.. +......+....+|.++|. |.|+....-.
T Consensus 108 giv~gpdg~--~Witd~-~---~aI~R~dpkt~evt~f~lp~~~a~~nlet~vfD~~G~-lWFt~q~G~y---------- 170 (353)
T COG4257 108 GIVVGPDGS--AWITDT-G---LAIGRLDPKTLEVTRFPLPLEHADANLETAVFDPWGN-LWFTGQIGAY---------- 170 (353)
T ss_pred eEEECCCCC--eeEecC-c---ceeEEecCcccceEEeecccccCCCcccceeeCCCcc-EEEeeccccc----------
Confidence 567889996 444432 2 25666777776632 2222222346788888885 6666432210
Q ss_pred ccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCC
Q 004766 212 TDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDG 291 (732)
Q Consensus 212 ~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 291 (732)
=+|+ +....+.+|..+... --.+++.+|||..-+ .+-. .+-|-.+|..++-.. .+
T Consensus 171 -----------GrLd-Pa~~~i~vfpaPqG~-gpyGi~atpdGsvwy-asla----gnaiaridp~~~~ae--v~----- 225 (353)
T COG4257 171 -----------GRLD-PARNVISVFPAPQGG-GPYGICATPDGSVWY-ASLA----GNAIARIDPFAGHAE--VV----- 225 (353)
T ss_pred -----------eecC-cccCceeeeccCCCC-CCcceEECCCCcEEE-Eecc----ccceEEcccccCCcc--ee-----
Confidence 0111 112334455544322 224778899998533 2211 133555564442100 00
Q ss_pred CCCcEEeeecccceEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecCCEEEEEEecCC
Q 004766 292 LLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDV 371 (732)
Q Consensus 292 ~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~~l~~~~~~~g 371 (732)
.+...+..+ .-..|+.--.++++. ..+ ..+|+++|..... |.+.--+.....-.++.+...+++.++.-..
T Consensus 226 -p~P~~~~~g---sRriwsdpig~~wit-twg--~g~l~rfdPs~~s-W~eypLPgs~arpys~rVD~~grVW~sea~a- 296 (353)
T COG4257 226 -PQPNALKAG---SRRIWSDPIGRAWIT-TWG--TGSLHRFDPSVTS-WIEYPLPGSKARPYSMRVDRHGRVWLSEADA- 296 (353)
T ss_pred -cCCCccccc---ccccccCccCcEEEe-ccC--CceeeEeCccccc-ceeeeCCCCCCCcceeeeccCCcEEeecccc-
Confidence 001111111 112344323455543 332 4689999987665 6543222212333445555434554433222
Q ss_pred eeEEEEEeCCCCceeeecccccceeeEeecccCCcEEEEEEec
Q 004766 372 KYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTS 414 (732)
Q Consensus 372 ~~~l~~~d~~~g~~~~~l~~~~g~v~~~~~s~d~~~l~~~~ss 414 (732)
..|.++|..+.+ .+.+..+.-....+....-..+++++-+.
T Consensus 297 -gai~rfdpeta~-ftv~p~pr~n~gn~ql~gr~ge~W~~e~g 337 (353)
T COG4257 297 -GAIGRFDPETAR-FTVLPIPRPNSGNIQLDGRPGELWFTEAG 337 (353)
T ss_pred -CceeecCcccce-EEEecCCCCCCCceeccCCCCceeecccC
Confidence 467778876433 35555442111122333333455554433
|
|
| >cd00519 Lipase_3 Lipase (class 3) | Back alignment and domain information |
|---|
Probab=82.96 E-value=3 Score=41.12 Aligned_cols=38 Identities=18% Similarity=0.350 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhh
Q 004766 542 FDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQ 581 (732)
Q Consensus 542 ~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~ 581 (732)
+.++...++.+.++ + ...+|.+.|||+||.++..++..
T Consensus 111 ~~~~~~~~~~~~~~-~-p~~~i~vtGHSLGGaiA~l~a~~ 148 (229)
T cd00519 111 YNQVLPELKSALKQ-Y-PDYKIIVTGHSLGGALASLLALD 148 (229)
T ss_pred HHHHHHHHHHHHhh-C-CCceEEEEccCHHHHHHHHHHHH
Confidence 34455555555544 2 24689999999999998877764
|
Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site. |
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=82.80 E-value=85 Score=34.96 Aligned_cols=287 Identities=11% Similarity=0.057 Sum_probs=0.0
Q ss_pred cCCCCeeEEEEEeCCCCCceEEeCCCCcCCC-----------CCEEEEeEEECCCCcEEEEEEeccCCceEEEEEEECCC
Q 004766 99 TGLQPQSVLYVQDSLDAKAKVLLDPNTLSDD-----------GTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIED 167 (732)
Q Consensus 99 ~~~~~~~~l~~r~~~~~~~~~l~D~~~l~~~-----------~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~ 167 (732)
.......+||+-+..++ ..|+|.....-. +.-.+-.+.|-| |+.++... .|+ .++++||+++
T Consensus 59 ~~~n~eHiLavadE~G~--i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wap-ge~~lVsa--sGD--sT~r~Wdvk~ 131 (720)
T KOG0321|consen 59 AAPNKEHILAVADEDGG--IILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAP-GESLLVSA--SGD--STIRPWDVKT 131 (720)
T ss_pred CCCCccceEEEecCCCc--eeeecchhhhcchhhhhhcccccccceeEeeccCC-CceeEEEc--cCC--ceeeeeeecc
Q ss_pred Cceecc--ccccee-eeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCCcccEEEEEECCCCCCCCeEEEec------
Q 004766 168 QIVEAD--ALSWFK-FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKD------ 238 (732)
Q Consensus 168 g~~~~~--~~~~~~-~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~------ 238 (732)
++..-. -++... .-+.+|.|+..-+|.+ .++..++.+|++.-........+..
T Consensus 132 s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~t------------------GgRDg~illWD~R~n~~d~~e~~~~~~~~~~ 193 (720)
T KOG0321|consen 132 SRLVGGRLNLGHTGSVKSECFMPTNPAVFCT------------------GGRDGEILLWDCRCNGVDALEEFDNRIYGRH 193 (720)
T ss_pred ceeecceeecccccccchhhhccCCCcceee------------------ccCCCcEEEEEEeccchhhHHHHhhhhhccc
Q ss_pred -----------------CCCCeeEEE---eEEecCCcEEEEEEe-cCCcceEEEEEEeCCCCCCCcccccccCCCCCcEE
Q 004766 239 -----------------PEHPKYIFS---GHVTEDGQYLVMCIE-ENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVK 297 (732)
Q Consensus 239 -----------------~~~~~~~~~---~~~SpDg~~l~~~~~-~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~ 297 (732)
.....-+.+ +.+..|...|+-.+. ++. |-++|+....+.-+.-.....+.+..
T Consensus 194 n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~-----iKVWDLRk~~~~~r~ep~~~~~~~t~- 267 (720)
T KOG0321|consen 194 NTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADST-----IKVWDLRKNYTAYRQEPRGSDKYPTH- 267 (720)
T ss_pred cCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcc-----eEEEeecccccccccCCCcccCccCc-
Q ss_pred eeecccceEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEE----EEecCCEEEEEEecCCee
Q 004766 298 LIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESA----TAVNLNQMIVSYLSDVKY 373 (732)
Q Consensus 298 l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~----~~~~~~~l~~~~~~~g~~ 373 (732)
-.......-......|.+|+.-..++ .||.+++.+-. ...+..-.......+ ..++++..++....+...
T Consensus 268 skrs~G~~nL~lDssGt~L~AsCtD~----sIy~ynm~s~s--~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~a 341 (720)
T KOG0321|consen 268 SKRSVGQVNLILDSSGTYLFASCTDN----SIYFYNMRSLS--ISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQA 341 (720)
T ss_pred ccceeeeEEEEecCCCCeEEEEecCC----cEEEEeccccC--cCchhhccCcccceeeeeeecCCCCceEeccCCCcce
Q ss_pred EEEEEeCCCCceeeecccccceeeEeecccCCcEEEEEEecCCCCceEEEE
Q 004766 374 VLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQC 424 (732)
Q Consensus 374 ~l~~~d~~~g~~~~~l~~~~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~ 424 (732)
-++.++-. ......+..+.-.|..+.+.+....=.++. +..--..+|++
T Consensus 342 yiw~vs~~-e~~~~~l~Ght~eVt~V~w~pS~~t~v~Tc-SdD~~~kiW~l 390 (720)
T KOG0321|consen 342 YIWVVSSP-EAPPALLLGHTREVTTVRWLPSATTPVATC-SDDFRVKIWRL 390 (720)
T ss_pred eeeeecCc-cCChhhhhCcceEEEEEeeccccCCCceee-ccCcceEEEec
|
|
| >PRK13614 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=82.74 E-value=27 Score=39.32 Aligned_cols=130 Identities=13% Similarity=0.091 Sum_probs=68.3
Q ss_pred hcCCCCCCCcEEeCCEEEEEEEcCCCCeeEEEEEeCCCCCc---eE-EeCCCCcCCCCCEEEEeEEECCCCcEEEEEEec
Q 004766 77 LFDSPRYDAPFKRGNKYFYFHNTGLQPQSVLYVQDSLDAKA---KV-LLDPNTLSDDGTAALIKVSVSEDAKYLAYALSY 152 (732)
Q Consensus 77 ~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~l~~r~~~~~~~---~~-l~D~~~l~~~~~~~~~~~~~SPDG~~la~~~~~ 152 (732)
.+.....+.|+++..-+.++-.++. +...+..+....++. .+ -+....+. ...|..+++|+||-++|+.+..
T Consensus 379 ~~~g~~Lt~PS~d~~g~vWtv~~g~-~~~vv~~~~~g~~~~~~~~~~~v~~~~l~---g~~I~~lrvSrDG~R~Avi~~~ 454 (573)
T PRK13614 379 LTSGSTLTRPSFSPQDWVWTAGPGG-NGRIVAYRPTGVAEGAQAPTVTLTADWLA---GRTVKELRVSREGVRALVISEQ 454 (573)
T ss_pred eecCCCccCCcccCCCCEEEeeCCC-CceEEEEecCCCcccccccceeecccccC---CCeeEEEEECCCccEEEEEEEe
Confidence 3445678899986544555544432 223233332211110 11 12222221 2348899999999999999877
Q ss_pred cCCceEEEEEE---ECCCCce--eccccc---ceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCCcccEEEEEE
Q 004766 153 SGSDWATIKLM---RIEDQIV--EADALS---WFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHF 224 (732)
Q Consensus 153 ~G~e~~~i~v~---dl~~g~~--~~~~~~---~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 224 (732)
+|.. +|+|- .-..|.+ +..... .....+++|..|++ |+..+... ....++++..
T Consensus 455 ~g~~--~V~va~V~R~~~G~P~~L~~~~~~~~~~~~~sl~W~~~~s-l~V~~~~~---------------~~~~~~~~v~ 516 (573)
T PRK13614 455 NGKS--RVQVAGIVRNEDGTPRELTAPITLAADSDADTGAWVGDST-VVVTKASA---------------TSNVVPELLS 516 (573)
T ss_pred CCcc--EEEEEEEEeCCCCCeEEccCceecccCCCcceeEEcCCCE-EEEEeccC---------------CCcceEEEEE
Confidence 7754 34432 2235552 221111 12346899997665 66654322 1234577777
Q ss_pred CCCC
Q 004766 225 LGTK 228 (732)
Q Consensus 225 lgt~ 228 (732)
++.+
T Consensus 517 v~~g 520 (573)
T PRK13614 517 VDAG 520 (573)
T ss_pred eCCC
Confidence 7543
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=82.67 E-value=13 Score=44.13 Aligned_cols=111 Identities=11% Similarity=0.085 Sum_probs=66.6
Q ss_pred eEEECCCCcEEEEEEeccCCceEEEEEEECCCCce--ecccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCccc
Q 004766 136 KVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIV--EADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETD 213 (732)
Q Consensus 136 ~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~--~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~ 213 (732)
.++|--||++.|.+.-....+...|+|||-+ |.. ..+...+. ...++|-|.|..|+.......
T Consensus 200 ~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l-~~~LsWkPsgs~iA~iq~~~s------------- 264 (1265)
T KOG1920|consen 200 SISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGL-QHSLSWKPSGSLIAAIQCKTS------------- 264 (1265)
T ss_pred eEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCccccc-ccceeecCCCCeEeeeeecCC-------------
Confidence 3789999999998765555555789999988 442 11222222 378999999988887654331
Q ss_pred CCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCC
Q 004766 214 SNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENC 265 (732)
Q Consensus 214 ~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~ 265 (732)
.. +|......+ ......+...+.+..-...+.|..++.-|+...+...
T Consensus 265 --d~-~IvffErNG-L~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e 312 (1265)
T KOG1920|consen 265 --DS-DIVFFERNG-LRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLE 312 (1265)
T ss_pred --CC-cEEEEecCC-ccccccccCCcccccchheeeecCCCCceeeeecccc
Confidence 11 333333321 1122233323322221457899999999988665443
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=82.39 E-value=95 Score=35.23 Aligned_cols=103 Identities=11% Similarity=0.085 Sum_probs=55.7
Q ss_pred ceEEEEeCCCCCCceEeccCCCCCceeEEEEecCCEEEEEEecCC----eeEEEEEeCCC-Cceeeecc-cc--cceeeE
Q 004766 327 YKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDV----KYVLQIRDLKN-GSLLHQLP-IE--IGSVNA 398 (732)
Q Consensus 327 ~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~~l~~~~~~~g----~~~l~~~d~~~-g~~~~~l~-~~--~g~v~~ 398 (732)
..+..+|..+.. |+.+.+-.....-.++...+ +.||+....++ ...+.++|+.+ .+. +.+. ++ ......
T Consensus 432 ~~ve~YDP~td~-W~~v~~m~~~r~~~~~~~~~-~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W-~~~~~m~~~r~~~~~ 508 (557)
T PHA02713 432 NKVIRYDTVNNI-WETLPNFWTGTIRPGVVSHK-DDIYVVCDIKDEKNVKTCIFRYNTNTYNGW-ELITTTESRLSALHT 508 (557)
T ss_pred ceEEEECCCCCe-EeecCCCCcccccCcEEEEC-CEEEEEeCCCCCCccceeEEEecCCCCCCe-eEccccCccccccee
Confidence 468889988876 87665432222222344445 78888865432 13578899986 454 4433 22 111211
Q ss_pred eecccCCcEEEEEEecCCCCceEEEEECCCCCCceEEEEe
Q 004766 399 ISARREDSVVFISFTSFLIPGIVYQCNLKTETPEMKIFRE 438 (732)
Q Consensus 399 ~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~~~~~~~l~~ 438 (732)
.. -+ +.+++. .+......+..||+.+.+ ++.+..
T Consensus 509 ~~--~~-~~iyv~-Gg~~~~~~~e~yd~~~~~--W~~~~~ 542 (557)
T PHA02713 509 IL--HD-NTIMML-HCYESYMLQDTFNVYTYE--WNHICH 542 (557)
T ss_pred EE--EC-CEEEEE-eeecceeehhhcCccccc--ccchhh
Confidence 11 13 345543 233333467788888874 655543
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.36 E-value=83 Score=34.54 Aligned_cols=97 Identities=10% Similarity=0.079 Sum_probs=55.4
Q ss_pred CceEEEEeCCCCCCceEeccCCCCCceeEEEEecCCEEEEEEecCCeeEEEEEeCCCCceeeecccccceeeEeecc--c
Q 004766 326 KYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISAR--R 403 (732)
Q Consensus 326 ~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~~l~~~~~~~g~~~l~~~d~~~g~~~~~l~~~~g~v~~~~~s--~ 403 (732)
..++..++..... .....-.. .....++.+++|+.++++.. .+|.+||.++++.+..++.+.+.|..+++. .
T Consensus 123 d~~v~~~~~~~~~-~~~~~~~~-~~~~~sl~is~D~~~l~~as----~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~ 196 (541)
T KOG4547|consen 123 DLKVVYILEKEKV-IIRIWKEQ-KPLVSSLCISPDGKILLTAS----RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLI 196 (541)
T ss_pred ceeEEEEecccce-eeeeeccC-CCccceEEEcCCCCEEEecc----ceEEEEEccCceEEEEecCCCcceEEEEEEEec
Confidence 5677777776654 22223222 23456788888766666543 479999999888777777655555544432 2
Q ss_pred CCc--EEEEEEecCCCCceEEEEECCC
Q 004766 404 EDS--VVFISFTSFLIPGIVYQCNLKT 428 (732)
Q Consensus 404 d~~--~l~~~~ss~~~p~~~y~~d~~~ 428 (732)
+|. ..+++...+..--.++..+-+.
T Consensus 197 ~g~~G~~vLssa~~~r~i~~w~v~~~~ 223 (541)
T KOG4547|consen 197 DGIIGKYVLSSAAAERGITVWVVEKED 223 (541)
T ss_pred cccccceeeeccccccceeEEEEEccc
Confidence 332 2233333344444556666543
|
|
| >KOG3724 consensus Negative regulator of COPII vesicle formation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=82.18 E-value=1.5 Score=49.34 Aligned_cols=46 Identities=20% Similarity=0.330 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHc-----CCC--CCCcEEEEecChhHHHHHHHHhhCCCeeeEE
Q 004766 543 DDFISASEYLISA-----GYT--QSRKLCIEGGSNGGLLVGACINQRPDLFGCA 589 (732)
Q Consensus 543 ~D~~~~~~~l~~~-----~~~--d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~ 589 (732)
+=+.+||+++.+. .+. -|.-|++.||||||.++-++++. |......
T Consensus 157 EYV~dAIk~ILslYr~~~e~~~p~P~sVILVGHSMGGiVAra~~tl-kn~~~~s 209 (973)
T KOG3724|consen 157 EYVNDAIKYILSLYRGEREYASPLPHSVILVGHSMGGIVARATLTL-KNEVQGS 209 (973)
T ss_pred HHHHHHHHHHHHHhhcccccCCCCCceEEEEeccchhHHHHHHHhh-hhhccch
Confidence 3445677766543 221 26779999999999888777765 6554444
|
|
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=81.56 E-value=54 Score=31.83 Aligned_cols=88 Identities=13% Similarity=0.171 Sum_probs=53.3
Q ss_pred EEEecCCeEEEEeCCCCCCceE--EEEeCCCCC--CceEeccCC-----CCCceeEEEEecCCEEEEEEecCCeeEEEEE
Q 004766 308 VIANDDTVFTFLTNKDAPKYKI--IRVDLKEPN--DWFEVIPEA-----ERDVLESATAVNLNQMIVSYLSDVKYVLQIR 378 (732)
Q Consensus 308 ~~s~dg~~l~~~s~~~~~~~~l--~~~d~~~~~--~~~~l~~~~-----~~~~l~~~~~~~~~~l~~~~~~~g~~~l~~~ 378 (732)
.|+.|.+.+|++-.. ++.+ |-+|..++. +.+.++.-+ +...-.+..+...+.|+++.-.. +++..+
T Consensus 164 ~Wd~d~K~fY~iDsl---n~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng--~~V~~~ 238 (310)
T KOG4499|consen 164 AWDSDAKKFYYIDSL---NYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNG--GTVQKV 238 (310)
T ss_pred cccccCcEEEEEccC---ceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecC--cEEEEE
Confidence 488888888886433 5666 445566654 222222211 01111234454446777776655 579999
Q ss_pred eCCCCceeeecccccceeeEee
Q 004766 379 DLKNGSLLHQLPIEIGSVNAIS 400 (732)
Q Consensus 379 d~~~g~~~~~l~~~~g~v~~~~ 400 (732)
|+.+|+.+.++.+|.-.+++..
T Consensus 239 dp~tGK~L~eiklPt~qitscc 260 (310)
T KOG4499|consen 239 DPTTGKILLEIKLPTPQITSCC 260 (310)
T ss_pred CCCCCcEEEEEEcCCCceEEEE
Confidence 9999999888888855555444
|
|
| >PLN02454 triacylglycerol lipase | Back alignment and domain information |
|---|
Probab=81.54 E-value=2.4 Score=44.93 Aligned_cols=40 Identities=13% Similarity=0.120 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHh
Q 004766 541 CFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACIN 580 (732)
Q Consensus 541 ~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~ 580 (732)
..+++.+.++.|+++---..-+|.+.|||+||.|+..++.
T Consensus 208 ~r~qvl~~V~~l~~~Yp~~~~sI~vTGHSLGGALAtLaA~ 247 (414)
T PLN02454 208 ARSQLLAKIKELLERYKDEKLSIVLTGHSLGASLATLAAF 247 (414)
T ss_pred HHHHHHHHHHHHHHhCCCCCceEEEEecCHHHHHHHHHHH
Confidence 4467788888887753211225999999999999988875
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 732 | ||||
| 1qfs_A | 710 | Prolyl Oligopeptidase From Porcine Muscle With Cova | 0.0 | ||
| 3ddu_A | 709 | Prolyl Oligopeptidase With Gsk552 Length = 709 | 0.0 | ||
| 1e8m_A | 710 | Prolyl Oligopeptidase From Porcine Brain, Mutant, C | 0.0 | ||
| 1vz3_A | 710 | Prolyl Oligopeptidase From Porcine Brain, T597c Mut | 0.0 | ||
| 1h2x_A | 710 | Prolyl Oligopeptidase From Porcine Brain, Y473f Mut | 0.0 | ||
| 1e5t_A | 710 | Prolyl Oligopeptidase From Porcine Brain, Mutant Le | 0.0 | ||
| 1o6g_A | 710 | Prolyl Oligopeptidase From Porcine Brain, D641n Mut | 0.0 | ||
| 1o6f_A | 710 | Prolyl Oligopeptidase From Porcine Brain, D641a Mut | 0.0 | ||
| 4ax4_A | 710 | Prolyl Oligopeptidase From Porcine Brain, H680a Mut | 0.0 | ||
| 1vz2_A | 710 | Prolyl Oligopeptidase From Porcine Brain, Y73c/v427 | 0.0 | ||
| 1qfm_A | 710 | Prolyl Oligopeptidase From Porcine Muscle Length = | 0.0 | ||
| 3iun_A | 693 | Appep_d622n Opened State Length = 693 | 1e-138 | ||
| 3mun_A | 693 | Appep_pepclose Closed State Length = 693 | 1e-136 | ||
| 3iuj_A | 693 | Appep_wt2 Opened State Length = 693 | 1e-135 | ||
| 3ivm_A | 693 | Appep_wt+pp Closed State Length = 693 | 1e-135 | ||
| 1yr2_A | 741 | Structural And Mechanistic Analysis Of Two Prolyl E | 1e-135 | ||
| 2bkl_A | 695 | Structural And Mechanistic Analysis Of Two Prolyl E | 1e-119 | ||
| 4hvt_A | 711 | Structure Of A Post-Proline Cleaving Enzyme From Ri | 1e-50 | ||
| 2xe4_A | 751 | Structure Of Oligopeptidase B From Leishmania Major | 4e-50 |
| >pdb|1QFS|A Chain A, Prolyl Oligopeptidase From Porcine Muscle With Covalently Bound Inhibitor Z-Pro-Prolinal Length = 710 | Back alignment and structure |
|
| >pdb|3DDU|A Chain A, Prolyl Oligopeptidase With Gsk552 Length = 709 | Back alignment and structure |
|
| >pdb|1E8M|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Mutant, Complexed With Inhibitor Length = 710 | Back alignment and structure |
|
| >pdb|1VZ3|A Chain A, Prolyl Oligopeptidase From Porcine Brain, T597c Mutant Length = 710 | Back alignment and structure |
|
| >pdb|1H2X|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Y473f Mutant Length = 710 | Back alignment and structure |
|
| >pdb|1E5T|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Mutant Length = 710 | Back alignment and structure |
|
| >pdb|1O6G|A Chain A, Prolyl Oligopeptidase From Porcine Brain, D641n Mutant With Bound Peptide Ligand Suc-Gly-Pro Length = 710 | Back alignment and structure |
|
| >pdb|1O6F|A Chain A, Prolyl Oligopeptidase From Porcine Brain, D641a Mutant With Bound Peptide Ligand Suc-Gly-Pro Length = 710 | Back alignment and structure |
|
| >pdb|4AX4|A Chain A, Prolyl Oligopeptidase From Porcine Brain, H680a Mutant Length = 710 | Back alignment and structure |
|
| >pdb|1VZ2|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Y73c/v427c/c255t Mutant Length = 710 | Back alignment and structure |
|
| >pdb|1QFM|A Chain A, Prolyl Oligopeptidase From Porcine Muscle Length = 710 | Back alignment and structure |
|
| >pdb|3IUN|A Chain A, Appep_d622n Opened State Length = 693 | Back alignment and structure |
|
| >pdb|3MUN|A Chain A, Appep_pepclose Closed State Length = 693 | Back alignment and structure |
|
| >pdb|3IUJ|A Chain A, Appep_wt2 Opened State Length = 693 | Back alignment and structure |
|
| >pdb|3IVM|A Chain A, Appep_wt+pp Closed State Length = 693 | Back alignment and structure |
|
| >pdb|1YR2|A Chain A, Structural And Mechanistic Analysis Of Two Prolyl Endopeptidases: Role Of Inter-Domain Dynamics In Catalysis And Specificity Length = 741 | Back alignment and structure |
|
| >pdb|2BKL|A Chain A, Structural And Mechanistic Analysis Of Two Prolyl Endopeptidases: Role Of Inter-Domain Dynamics In Catalysis And Specificity Length = 695 | Back alignment and structure |
|
| >pdb|4HVT|A Chain A, Structure Of A Post-Proline Cleaving Enzyme From Rickettsia Typhi Length = 711 | Back alignment and structure |
|
| >pdb|2XE4|A Chain A, Structure Of Oligopeptidase B From Leishmania Major Length = 751 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 732 | |||
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 0.0 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 0.0 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 0.0 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 0.0 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 0.0 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 4e-24 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 8e-20 | |
| 1l7a_A | 318 | Cephalosporin C deacetylase; structural genomics, | 8e-12 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 1e-11 | |
| 3fcy_A | 346 | Xylan esterase 1; alpha/beta hydrolase, carbohydra | 3e-11 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 3e-11 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 6e-11 | |
| 3ksr_A | 290 | Putative serine hydrolase; catalytic triad, struct | 2e-10 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 2e-10 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 4e-09 | |
| 1vlq_A | 337 | Acetyl xylan esterase; TM0077, structural genomics | 1e-07 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-07 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 5e-06 | |
| 3hlk_A | 446 | Acyl-coenzyme A thioesterase 2, mitochondrial; alp | 2e-06 | |
| 3k2i_A | 422 | Acyl-coenzyme A thioesterase 4; alpha/beta hydrola | 5e-06 | |
| 2jbw_A | 386 | Dhpon-hydrolase, 2,6-dihydroxy-pseudo-oxynicotine | 1e-04 | |
| 3doh_A | 380 | Esterase; alpha-beta hydrolase, beta sheet; 2.60A | 7e-04 |
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* Length = 710 | Back alignment and structure |
|---|
Score = 998 bits (2582), Expect = 0.0
Identities = 391/724 (54%), Positives = 509/724 (70%), Gaps = 19/724 (2%)
Query: 10 SLQYPVARRDESVVDDYHGVKIVDPYRWLEDPDAEEVKDFVQKQVELTDSVLKNCDVRDK 69
S QYP RDE+ + DYHG K+ DPY WLEDPD+E+ K FV+ Q ++T L+ C +R
Sbjct: 3 SFQYPDVYRDETAIQDYHGHKVCDPYAWLEDPDSEQTKAFVEAQNKITVPFLEQCPIRGL 62
Query: 70 LREKITKLFDSPRYDAPFKRGNKYFYFHNTGLQPQSVLYVQDSLDAKAKVLLDPNTLSDD 129
+E++T+L+D P+Y FK+G +YFYF+NTGLQ Q VLYVQDSL+ +A+V LDPN LSDD
Sbjct: 63 YKERMTELYDYPKYSCHFKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDD 122
Query: 130 GTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWFKFSSIAWTHDS 189
GT AL + SED +Y AY LS SGSDW TIK M+++ D L KFS +AWTHD
Sbjct: 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDG 182
Query: 190 KGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGH 249
KG FY+ YP D GTET +NL+ + YYH LGT QSEDILC + P+ PK++
Sbjct: 183 KGMFYNAYPQQDGKSD---GTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAE 239
Query: 250 VTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVI 309
+++DG+Y+++ I E CDPVN+++YCDL G+ G L +VKLID F+ +Y+ +
Sbjct: 240 LSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGI------LKWVKLIDNFEGEYDYV 293
Query: 310 ANDDTVFTFLTNKDAPKYKIIRVDLKEPN--DWFEVIPEAERDVLESATAVNLNQMIVSY 367
N+ TVFTF TN+ +P Y++I +D +P W ++PE E+DVLE V N +++ Y
Sbjct: 294 TNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCY 353
Query: 368 LSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLK 427
L DVK LQ+ DL G+LL P+E+GSV S +++D+ +F FTSFL PGI+Y C+L
Sbjct: 354 LHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLT 413
Query: 428 TETPEMKIFRETIIPGFDRSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYG 487
E E ++FRE + G D S++ Q+F PSKDG TKIPMFIV KK IKLDGSHP LYG
Sbjct: 414 KEELEPRVFREVTVKGIDASDYQTVQIFYPSKDG-TKIPMFIVHKKGIKLDGSHPAFLYG 472
Query: 488 YGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFIS 547
YGGFNIS+TP++SVSR I +RH+G V +ANIRGGGEYGE WHKGG LA KQNCFDDF
Sbjct: 473 YGGFNISITPNYSVSRLIFVRHMGGVLAVANIRGGGEYGETWHKGGILANKQNCFDDFQC 532
Query: 548 ASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIG 607
A+EYLI GYT ++L I GGSNGGLLV C NQRPDLFGC +A VGVMDML++HK+TIG
Sbjct: 533 AAEYLIKEGYTSPKRLTINGGSNGGLLVATCANQRPDLFGCVIAQVGVMDMLKFHKYTIG 592
Query: 608 HAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLH 667
HAW +D+GCS+ ++ F WLIKYSPLHNV+ P + YPS LLLTADHDDRVVPLH
Sbjct: 593 HAWTTDYGCSDSKQHFEWLIKYSPLHNVKLPEADDIQ----YPSMLLLTADHDDRVVPLH 648
Query: 668 SLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLG 727
SLK +AT+QY++ + Q NP++ ++ KAGHG G PT K+I+E +D + F+A+ L
Sbjct: 649 SLKFIATLQYIVGR---SRKQNNPLLIHVDTKAGHGAGKPTAKVIEEVSDMFAFIARCLN 705
Query: 728 ASWV 731
W+
Sbjct: 706 IDWI 709
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} Length = 695 | Back alignment and structure |
|---|
Score = 919 bits (2378), Expect = 0.0
Identities = 245/726 (33%), Positives = 382/726 (52%), Gaps = 49/726 (6%)
Query: 11 LQYPVARRDESVVDDYHGVKIVDPYRWLEDPDAEEVKDFVQKQVELTDSVLKNCDVRDKL 70
+ YP R ++ VVD HGV++ DPYRWLED A EV+ ++ Q L R+ L
Sbjct: 1 MSYPATRAEQ-VVDTLHGVQVADPYRWLEDEKAPEVQTWMTAQNAHAREALAKFPGREAL 59
Query: 71 REKITKLFDSPRYDAPFKRGNKYFYFHNTGLQPQSVLYVQDSLDAKAKVLLDPNTLSDDG 130
+ +LF + P +R ++FY + +++LY + + KVLLDPN S DG
Sbjct: 60 AARFKELFYTDSVSTPSRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDG 119
Query: 131 TAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIED-QIVEADALSWFKFSSIAWTHDS 189
T +L +VS D K +A+A + +D A + ++ ++ + + D + K+++ WT DS
Sbjct: 120 TVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGGKYATPKWTPDS 179
Query: 190 KGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGH 249
KGF+Y P + Y YH LGT+ S+D + + P
Sbjct: 180 KGFYYEWLPTDPSI------KVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSD 233
Query: 250 VTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVI 309
++ DG+YL + I N VY+ F L+ G A+YEV
Sbjct: 234 LSRDGKYLFVYILRGWSE-NDVYWKRPGEKD--------------FRLLVKGVGAKYEVH 278
Query: 310 ANDDTVFTFLTNKDAPKYKIIRVDLKEPN--DWFEVIPEAERDVLESATAVNLNQMIVSY 367
A D F LT++ AP+ ++ VD +P W E++PE L S + V + + Y
Sbjct: 279 AWKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIVG-GHLSLEY 336
Query: 368 LSDVKYVLQIRDLKNGSLLHQLPI-EIGSVNAISARREDSVVFISFTSFLIPGIVYQCNL 426
L D +++ LK G + + + +G+ + + + + FTSF P +Y+ ++
Sbjct: 337 LKDATSEVRVATLK-GKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSV 395
Query: 427 KTETPEMKIFRETIIPGFDRSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLY 486
T + +++ + +P + ++ V QVF SKDG TK+PMF+V +K++K DG+ P LLY
Sbjct: 396 ST--GKSELWAKVDVP-MNPEQYQVEQVFYASKDG-TKVPMFVVHRKDLKRDGNAPTLLY 451
Query: 487 GYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFI 546
GYGGFN+++ +F S + G V+ +AN+RGGGEYG+ WH G L KKQN FDDF
Sbjct: 452 GYGGFNVNMEANFRSSILPWL-DAGGVYAVANLRGGGEYGKAWHDAGRLDKKQNVFDDFH 510
Query: 547 SASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTI 606
+A+EYL+ YTQ ++L I GGSNGGLLVGA + QRP+L+G + V ++DM+RYH F
Sbjct: 511 AAAEYLVQQKYTQPKRLAIYGGSNGGLLVGAAMTQRPELYGAVVCAVPLLDMVRYHLFGS 570
Query: 607 GHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPL 666
G W+ ++G +E+ E+F L YSP H+VR +YP+ L++ ADHDDRV P+
Sbjct: 571 GRTWIPEYGTAEKPEDFKTLHAYSPYHHVR--------PDVRYPALLMMAADHDDRVDPM 622
Query: 667 HSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKML 726
H+ K +A +Q + + RIE AGHG K I+ + D Y F+ ++L
Sbjct: 623 HARKFVAAVQ-------NSPGNPATALLRIEANAGHGGADQVAKAIESSVDLYSFLFQVL 675
Query: 727 GASWVE 732
+
Sbjct: 676 DVQGAQ 681
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} Length = 741 | Back alignment and structure |
|---|
Score = 919 bits (2377), Expect = 0.0
Identities = 285/736 (38%), Positives = 384/736 (52%), Gaps = 48/736 (6%)
Query: 1 MASLSGIDESLQYPVARRDESVVDDYHGVKIVDPYRWLEDP--DAEEVKDFVQKQVELTD 58
+A + YP + + +V+D+ G K+ DP+RWLE +V +VQ Q T
Sbjct: 28 LAKDQAMPSLPPYPASPQVP-LVEDHFGEKVSDPWRWLEADVRTDAKVAAWVQAQSAYTA 86
Query: 59 SVLKNCDVRDKLREKITKLFDSPRYDAPFKRGNKYFYFHNTGLQPQSVLYVQD---SLDA 115
+ LK R L +++ L D R+ P +RG FY N+GL QS L V+ +
Sbjct: 87 AYLKQLPERAALEKRMKALIDYERFGLPQRRGASVFYSWNSGLMNQSQLLVRPADAPVGT 146
Query: 116 KAKVLLDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADAL 175
K +VLLDPNT + DG AL + S+D + LAY++ GSDW T+K + + D AD L
Sbjct: 147 KGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADEL 206
Query: 176 SWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILC 235
W KFS +AW + YSR+ PKEG N + H LGT QS D
Sbjct: 207 KWVKFSGLAWLGND-ALLYSRFAEPKEG-----QAFQALNYNQTVWLHRLGTPQSADQPV 260
Query: 236 WKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPF 295
+ PE PK V+ DG+++V+ E DPVN V+ ++ G P
Sbjct: 261 FATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIG-----------PV 309
Query: 296 VKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESA 355
LI AQ++ + F++ AP KI+RVDL F+ + +D LES
Sbjct: 310 TALIPDLKAQWDFVDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESV 369
Query: 356 TAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPI-EIGSVNAISARREDSVVFISFTS 414
N++ SY+ D K + DL G + + IGS + +S R D ++SF+S
Sbjct: 370 GIAG-NRLFASYIHDAKSQVLAFDLD-GKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSS 427
Query: 415 FLIPGIVYQCNLKTETPEMKIFRETIIPGFDRSEFHVHQVFVPSKDGSTKIPMFIVSKKN 474
F P V + T + + + FD ++F V QVF PSKDG TK+PMFIV +K+
Sbjct: 428 FTQPATVLALDPAT--AKTTPWEPVHL-TFDPADFRVEQVFYPSKDG-TKVPMFIVRRKD 483
Query: 475 IKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGA 534
G P LLYGYGGFN+++TP FS + G F +AN+RGGGEYG+ WH G
Sbjct: 484 --AKGPLPTLLYGYGGFNVALTPWFSAGFMTWIDS-GGAFALANLRGGGEYGDAWHDAGR 540
Query: 535 LAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVG 594
KKQN FDDFI+A E+LI+ G T L IEGGSNGGLL+GA NQRPDLF A VG
Sbjct: 541 RDKKQNVFDDFIAAGEWLIANGVTPRHGLAIEGGSNGGLLIGAVTNQRPDLFAAASPAVG 600
Query: 595 VMDMLRYHKFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLL 654
VMDMLR+ +FT G WV D+G E+E ++ L +YSP HNVR YP+ L+
Sbjct: 601 VMDMLRFDQFTAGRYWVDDYGYPEKEADWRVLRRYSPYHNVR--------SGVDYPAILV 652
Query: 655 LTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDE 714
TAD DDRVVP HS K A +Q + P + RIE +AGHG G P K I+E
Sbjct: 653 TTADTDDRVVPGHSFKYTAALQ-------TAAIGPKPHLIRIETRAGHGSGKPIDKQIEE 705
Query: 715 AADRYGFMAKMLGASW 730
AD F+A G +
Sbjct: 706 TADVQAFLAHFTGLTP 721
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* Length = 693 | Back alignment and structure |
|---|
Score = 905 bits (2342), Expect = 0.0
Identities = 278/734 (37%), Positives = 400/734 (54%), Gaps = 49/734 (6%)
Query: 2 ASLSGIDESLQYPVARRDESVVDDYHGVKIVDPYRWLEDPDAEEVKDFVQKQVELTDSVL 61
S L YPV R+ E VD Y G + DPYRWLED + E + +V+ Q +T L
Sbjct: 1 GSHMSGKARLHYPVTRQGE-QVDHYFGQAVADPYRWLEDDRSPETEAWVKAQNAVTQDYL 59
Query: 62 KNCDVRDKLREKITKLFDSPRYDAPFKRGNKYFYFHNTGLQPQSVLYVQDSLDAKAKVLL 121
R ++EK+ ++ + APF+ G +++F N GLQ Q+VL+ Q A+V L
Sbjct: 60 AQIPYRAAIKEKLAASWNYAKEGAPFREGRYHYFFKNDGLQNQNVLWRQQE-GKPAEVFL 118
Query: 122 DPNTLSDDGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWFKFS 181
DPNTLS DGT AL ++S S D + LAY+LS +GSDW I LM +E + L KFS
Sbjct: 119 DPNTLSPDGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVKFS 178
Query: 182 SIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKD-PE 240
I+W + +GFFYS Y P + H+ Y+H LGT Q +D L + P
Sbjct: 179 GISWLGN-EGFFYSSYDKPDGS------ELSARTDQHKVYFHRLGTAQEDDRLVFGAIPA 231
Query: 241 HPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLID 300
VTED ++L++ + N++Y DLS P + +
Sbjct: 232 QHHRYVGATVTEDDRFLLISAANSTSG-NRLYVKDLS------------QENAPLLTVQG 278
Query: 301 GFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPN--DWFEVIPEAERDVLESATAV 358
DA ++ N + LTN+DAP +++ VD P W ++IPE ++ + + +
Sbjct: 279 DLDADVSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVLTVHSGS- 337
Query: 359 NLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIP 418
+ Y+ D ++ D + + +GSV+ + + +D ++ F ++ P
Sbjct: 338 --GYLFAEYMVDATARVEQFDYEGKRVREVALPGLGSVSGFNGKHDDPALYFGFENYAQP 395
Query: 419 GIVYQCNLKTETPEMKIFRETIIPGFDRSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLD 478
+Y+ K+ + ++R + P F ++ Q F SKDG T++P+ I +K +KLD
Sbjct: 396 PTLYRFEPKS--GAISLYRASAAP-FKPEDYVSEQRFYQSKDG-TRVPLIISYRKGLKLD 451
Query: 479 GSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKK 538
GS+P +LYGYGGF++S+TPSFSVS + LG V+ +AN+RGGGEYG+ WH G K
Sbjct: 452 GSNPTILYGYGGFDVSLTPSFSVSVANWL-DLGGVYAVANLRGGGEYGQAWHLAGTQQNK 510
Query: 539 QNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDM 598
QN FDDFI+A+EYL + GYT++ +L I GGSNGGLLVGA + QRPDL AL VGV+DM
Sbjct: 511 QNVFDDFIAAAEYLKAEGYTRTDRLAIRGGSNGGLLVGAVMTQRPDLMRVALPAVGVLDM 570
Query: 599 LRYHKFTIGHAWVSDFGCSEEEEEFY-WLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTA 657
LRYH FT G W D+G S + E + +L YSPLHNVR YPST++ TA
Sbjct: 571 LRYHTFTAGTGWAYDYGTSADSEAMFDYLKGYSPLHNVR--------PGVSYPSTMVTTA 622
Query: 658 DHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAAD 717
DHDDRVVP HS K AT+Q ++ +P + RIE AGHG G P K+I+++AD
Sbjct: 623 DHDDRVVPAHSFKFAATLQ-------ADNAGPHPQLIRIETNAGHGAGTPVAKLIEQSAD 675
Query: 718 RYGFMAKMLGASWV 731
Y F +G +
Sbjct: 676 IYAFTLYEMGYREL 689
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} Length = 751 | Back alignment and structure |
|---|
Score = 753 bits (1946), Expect = 0.0
Identities = 179/771 (23%), Positives = 317/771 (41%), Gaps = 87/771 (11%)
Query: 1 MASLSGIDESLQYPVARR-------------DESVVDDYHGVKIVDPYRWLEDPDAE--E 45
M+S S + S Q P+A + D DPY W+ D D +
Sbjct: 21 MSSDSSVAASAQPPIAAKKPHRVTLGYVEGEDRGPNPMNPPRYREDPYFWMRDDDRKDPA 80
Query: 46 VKDFVQKQVELTDSVLKN-CDVRDKLREKITKLFDSPRYDAPFKRGNKYFYFHNTGLQPQ 104
V + + K+ + + +RD + + + AP+ G +Y +P
Sbjct: 81 VIEHLNKEKVYFQARSADIAQLRDDIYAEHISHINEDDMSAPYVYGKYRYYTREVKGKPY 140
Query: 105 SVLYVQ-----DSLDAKAKVLLDPNTLSDDGTA-ALIKVS-VSEDAKYLAYALSYSGSDW 157
+ A +V++D N +++ +++V + +A+++ SG++
Sbjct: 141 KIYCRVFTDKEPGDVAAEEVIIDVNQVAEGKAFCDVMEVKPAPPEHDLVAFSVDMSGNEV 200
Query: 158 ATIKLMRIEDQ-IVEADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNL 216
TI+ RI D AD +S I W D FY
Sbjct: 201 YTIEFKRISDPSQTIADKVSG-TNGEIVWGPDHTSLFYVTKDET--------------LR 245
Query: 217 YHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDL 276
++ + H +G QSED+ +++ + D L I +V+ DL
Sbjct: 246 ENKVWRHVMGKLQSEDVCLYEEHNPLFSA-FMYKAADTNTLC--IGSQSPETAEVHLLDL 302
Query: 277 SALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKD-APKYKIIRVDLK 335
+ + P K +Y+V + + LTN+ A +K++
Sbjct: 303 RK-GNAHNTLEI---VRPREK-----GVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRG 353
Query: 336 EPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKN-------GSLLHQ 388
+P+DW V+ + DV + AV N ++V+ + + G+ L +
Sbjct: 354 QPSDWSHVLVDHSEDVFMESIAVRSNYLVVAGRRAGLTRIWTMMADSQDGVFKAGTGLRE 413
Query: 389 LPIE-----IGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTETPEMKIFRETIIPG 443
+ +E + V + E+ + ++S P + + + + RE + G
Sbjct: 414 VVMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHSRTAVKVRE-VGGG 472
Query: 444 FDRSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSR 503
FD + + V + F + D TKIP+ +V K++ + PC+LYGYG + +S+ P FS+
Sbjct: 473 FDAANYKVERRFATAPDQ-TKIPLSVVYHKDLDMSQPQPCMLYGYGSYGLSMDPQFSIQH 531
Query: 504 TILMRHLGAVFCIANIRGGGEYGEEWHKGGA-LAKKQNCFDDFISASEYLISAGYTQSRK 562
G +F IA+IRGG E G W++ GA K+N F DFI+A+E+L++A T +
Sbjct: 532 LPYCDR-GMIFAIAHIRGGSELGRAWYEIGAKYLTKRNTFSDFIAAAEFLVNAKLTTPSQ 590
Query: 563 LCIEGGSNGGLLVGACINQRPDLFGCALAHV---GVMDMLRYHKFTIGHAWVSDFGCSEE 619
L EG S GGLL+GA +N RPDLF ALA V VM + + ++G E
Sbjct: 591 LACEGRSAGGLLMGAVLNMRPDLFKVALAGVPFVDVMTTMCDPSIPLTTGEWEEWGNPNE 650
Query: 620 EEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVL 679
+ + +++ YSP+ NV + +YP+ ++ HD RV K ++ ++
Sbjct: 651 YKYYDYMLSYSPMDNV---------RAQEYPNIMVQCGLHDPRVAYWEPAKWVSKLR--- 698
Query: 680 CTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLGASW 730
E N I+ I+ ++GH K E+A + F+ K L ++
Sbjct: 699 ----ECKTDNNEILLNIDMESGHFSAKDRYKFWKESAIQQAFVCKHLKSTV 745
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A Length = 662 | Back alignment and structure |
|---|
Score = 106 bits (267), Expect = 4e-24
Identities = 65/352 (18%), Positives = 102/352 (28%), Gaps = 44/352 (12%)
Query: 342 EVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISA 401
E A N +I VL I D ++G L+ A
Sbjct: 285 EEFAGPLWTPGMRWFAPLANGLIAVVHGKGAAVLGILDPESGELV-DAAGPWTEWAATLT 343
Query: 402 RREDSVVFISFTSFLIPGIVYQCNLKTETPEMKIFRETIIPGFDRSEFHVHQVF-VPSKD 460
V ++ + +V L T T + D + + Q+ + D
Sbjct: 344 VSGTRAVGVAASPRTAYEVVE---LDTVTGRARTIGARHTDPVDPAYYPEPQIRTFTAPD 400
Query: 461 GSTKIPMFIVSKKNIKLDGS----HPCLLYGYGGFNISVTPSFS------VSRTILMRHL 510
G I I + G P ++ +GG V SR
Sbjct: 401 GRE-IHAHIYPPHSPDFTGPADELPPYVVMAHGGPTSRVPAVLDLDVAYFTSR------- 452
Query: 511 G-AVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGS 569
G V + N G YG + + +D + + L G +L + GGS
Sbjct: 453 GIGVADV-NYGGSTGYGRAYRERLRGRWGVVDVEDCAAVATALAEEGTADRARLAVRGGS 511
Query: 570 NGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHAWVSDF-----GCSEEEEEFY 624
GG + + D++ C V+D+L + H + S + G EE E Y
Sbjct: 512 AGGWTAASSLVS-TDVYACGTVLYPVLDLLGWAD-GGTHDFESRYLDFLIGSFEEFPERY 569
Query: 625 WLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQ 676
+PL P LLL D P + L +
Sbjct: 570 R--DRAPLTRA-----DRVRVP-----FLLLQGLEDPVCPPEQCDRFLEAVA 609
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A Length = 582 | Back alignment and structure |
|---|
Score = 93.0 bits (231), Expect = 8e-20
Identities = 69/391 (17%), Positives = 131/391 (33%), Gaps = 47/391 (12%)
Query: 296 VKLIDGFDAQYE--VIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLE 353
+++ D + + I+ V L + ++ VD ++ + +P +
Sbjct: 187 LRVFDSGEGSFSSASISPGMKVTAGLETAREAR--LVTVDPRDGSVEDLELPSKDFSSYR 244
Query: 354 SATAVNLNQMIVSYLSD-VKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISF 412
L YL D V+ R+ ++ + +E N + S
Sbjct: 245 PTAITWL-----GYLPDGRLAVVARREGRSAVFIDGERVEAPQGNHGRVVLWRGKLVTSH 299
Query: 413 TSFLIPGIVYQCNLKTETPEMKIFRETIIPGFDRSEF-HVHQVFVPSKDGSTKIPMFIVS 471
TS P + L + P E +P R V+V S DG +++P +++
Sbjct: 300 TSLSTPPRIVS--LPSGEP----LLEGGLPEDLRRSIAGSRLVWVESFDG-SRVPTYVLE 352
Query: 472 KKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLG-AVFCIANIRGGGEYGEEWH 530
P ++ +GG + S+ + + G V N RG YGEEW
Sbjct: 353 SGRA--PTPGPTVVLVHGGPFAEDSDSWD-TFAASLAAAGFHVVMP-NYRGSTGYGEEWR 408
Query: 531 KGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCAL 590
+D +A+ + +G +L I G S GG + + +P LF +
Sbjct: 409 LKIIGDPCGGELEDVSAAARWARESGLAS--ELYIMGYSYGGYMTLCALTMKPGLFKAGV 466
Query: 591 AHVGVMDMLRYHKFTIGHAWVSDFGCSE--EEEEFYWLIKYSPLH---NVRRPWEQNPDK 645
A V+D ++ + A +F E SP++ ++ P
Sbjct: 467 AGASVVDWEEMYELS--DAAFRNFIEQLTGGSREIMR--SRSPINHVDRIKEP------- 515
Query: 646 PFQYPSTLLLTADHDDRVVPLHSLKLLATMQ 676
L+ + R L+L+ +
Sbjct: 516 ------LALIHPQNASRTPLKPLLRLMGELL 540
|
| >1l7a_A Cephalosporin C deacetylase; structural genomics, alpha-beta-alpha sandwich, PSI, protein structure initiative; 1.50A {Bacillus subtilis} SCOP: c.69.1.25 PDB: 1odt_C 1ods_A 3fvt_A 3fvr_A 3fyu_A* 2xlb_A 2xlc_A 3fyt_A* 3fyu_B* Length = 318 | Back alignment and structure |
|---|
Score = 66.0 bits (161), Expect = 8e-12
Identities = 34/249 (13%), Positives = 65/249 (26%), Gaps = 50/249 (20%)
Query: 444 FDRSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLY--GYGGFNISVTPSFSV 501
+ V+++ S +I + +G HP ++ GY + +
Sbjct: 49 YPADGVKVYRLTYKSFGN-ARITGWYAVPDK---EGPHPAIVKYHGYNA-----SYDGEI 99
Query: 502 SRTILMRHLG-AVFCIANIRGGGEYGEEWHKGGALAKKQ--------------NCFDDFI 546
+ G A F + +RG + A + D +
Sbjct: 100 HEMVNWALHGYATFGM-LVRGQQRSEDTSISPHGHALGWMTKGILDKDTYYYRGVYLDAV 158
Query: 547 SASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFT- 605
A E + S ++ + GGS GG L A + + + R
Sbjct: 159 RALEVISSFDEVDETRIGVTGGSQGGGLTIAAAALSDIPKAAVADYPYLSNFERAIDVAL 218
Query: 606 ------IGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRR---PWEQNPDKPFQYPSTLLLT 656
I + + E + L + ++ R P L+
Sbjct: 219 EQPYLEINSFFRRNGSPETEVQAMKTLSYFDIMNLADRVKVP-------------VLMSI 265
Query: 657 ADHDDRVVP 665
D P
Sbjct: 266 GLIDKVTPP 274
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... Length = 740 | Back alignment and structure |
|---|
Score = 66.8 bits (163), Expect = 1e-11
Identities = 39/229 (17%), Positives = 66/229 (28%), Gaps = 33/229 (14%)
Query: 455 FVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGG-FNISVTPSFSVS-RTILMRHLG- 511
TK ++ + +P LL Y G + F ++ T L
Sbjct: 476 LDFIILNETKFWYQMILPPHFDKSKKYPLLLDVYAGPCSQKADTVFRLNWATYLASTENI 535
Query: 512 AVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNG 571
V RG G G++ +D I A+ G+ ++++ I G S G
Sbjct: 536 IVASFDG-RGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYG 594
Query: 572 GLLVGACINQRPDLFGCALAHVGVMDML--------RYHKFTIGHAWVSDFGCSEEEEEF 623
G + + +F C +A V RY G E+
Sbjct: 595 GYVTSMVLGSGSGVFKCGIAVAPVSRWEYYDSVYTERYM------------GLPTPEDNL 642
Query: 624 YWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLL 672
+ + E + LL+ DD V S ++
Sbjct: 643 DHYRNSTVMSRA----ENFKQVEY-----LLIHGTADDNVHFQQSAQIS 682
|
| >3fcy_A Xylan esterase 1; alpha/beta hydrolase, carbohydrate esterase, CE7; 2.10A {Thermoanaerobacterium SP} Length = 346 | Back alignment and structure |
|---|
Score = 64.9 bits (158), Expect = 3e-11
Identities = 39/260 (15%), Positives = 68/260 (26%), Gaps = 55/260 (21%)
Query: 444 FDRSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLY--GYGGFNISVTPSFSV 501
F S + ++ G +I + K +G HP L+ GY S
Sbjct: 75 FQVSFAECYDLYFTGVRG-ARIHAKYIKPKT---EGKHPALIRFHGYSS------NSGDW 124
Query: 502 SRTILMRHLG-AVFCIANIRGGGEYGEEWHKG-----------GALAKKQN-----CFDD 544
+ + G V + ++RG G ++ G N F D
Sbjct: 125 NDKLNYVAAGFTVVAM-DVRGQGGQSQDVGGVTGNTLNGHIIRGLDDDADNMLFRHIFLD 183
Query: 545 FISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKF 604
+ +++ ++ + G S GG L AC P + + + D R
Sbjct: 184 TAQLAGIVMNMPEVDEDRVGVMGPSQGGGLSLACAALEPRVRKVVSEYPFLSDYKRVWDL 243
Query: 605 TIGHAWVSDFG---------CSEEEEEFYWLIKYSPLHNVRR---PWEQNPDKPFQYPST 652
+ + E E F L + +R
Sbjct: 244 DLAKNAYQEITDYFRLFDPRHERENEVFTKLGYIDVKNLAKRIKGD-------------V 290
Query: 653 LLLTADHDDRVVPLHSLKLL 672
L+ D P
Sbjct: 291 LMCVGLMDQVCPPSTVFAAY 310
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* Length = 706 | Back alignment and structure |
|---|
Score = 65.9 bits (161), Expect = 3e-11
Identities = 45/230 (19%), Positives = 80/230 (34%), Gaps = 38/230 (16%)
Query: 456 VPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNI-SVTPSFSVSRTILMRHL---G 511
+ + DG T + + + +P ++Y YGG + VT ++ S ++ G
Sbjct: 460 IMAADGQTPLYYKLTMPLHFDPAKKYPVIVYVYGGPHAQLVTKTWRSSVGGWDIYMAQKG 519
Query: 512 -AVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSN 570
AVF + + RG G + + Q D + ++L S + + ++ + G S
Sbjct: 520 YAVFTVDS-RGSANRGAAFEQVIHRRLGQTEMADQMCGVDFLKSQSWVDADRIGVHGWSY 578
Query: 571 GGLLVGACINQRPDLFGCALAHVGVMDML--------RYHKFTIGHAWVSDFGCSEEEEE 622
GG + + D+F +A V+D RY +E E
Sbjct: 579 GGFMTTNLMLTHGDVFKVGVAGGPVIDWNRYAIMYGERYF------------DAPQENPE 626
Query: 623 FYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLL 672
Y + L + +L+ D VV HSL L
Sbjct: 627 GY--DAANLLKRA-----GDLKGRL-----MLIHGAIDPVVVWQHSLLFL 664
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} Length = 719 | Back alignment and structure |
|---|
Score = 64.9 bits (158), Expect = 6e-11
Identities = 39/229 (17%), Positives = 72/229 (31%), Gaps = 33/229 (14%)
Query: 455 FVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNI-SVTPSFSVS-RTILMRHLG- 511
+ + ++ +P L+ YGG SV F+V+ + L G
Sbjct: 470 IKKLEVDEITLWYKMILPPQFDRSKKYPLLIQVYGGPCSQSVRSVFAVNWISYLASKEGM 529
Query: 512 AVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNG 571
+ + RG G++ +D I+A I G+ +++ I G S G
Sbjct: 530 VIALVDG-RGTAFQGDKLLYAVYRKLGVYEVEDQITAVRKFIEMGFIDEKRIAIWGWSYG 588
Query: 572 GLLVGACINQRPDLFGCALAHVGVMDML--------RYHKFTIGHAWVSDFGCSEEEEEF 623
G + + LF C +A V R+ ++ E
Sbjct: 589 GYVSSLALASGTGLFKCGIAVAPVSSWEYYASVYTERFMGLPTK----------DDNLEH 638
Query: 624 YWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLL 672
Y + + E + + LL+ DD V +S ++
Sbjct: 639 Y--KNSTVMARA----EYFRNVDY-----LLIHGTADDNVHFQNSAQIA 676
|
| >3ksr_A Putative serine hydrolase; catalytic triad, structural genomics, JOIN for structural genomics, JCSG; 2.69A {Xanthomonas campestris PV} Length = 290 | Back alignment and structure |
|---|
Score = 61.8 bits (150), Expect = 2e-10
Identities = 37/252 (14%), Positives = 70/252 (27%), Gaps = 38/252 (15%)
Query: 481 HPCLLYGYGGFNISVTPSFSVSRTILMRHLG-AVFCIANIRGGGEYGEEWHKGGALAKKQ 539
P +L+ +G + S+ R LG ++RG Y
Sbjct: 28 MPGVLFVHGW---GGSQHHSLVRAREAVGLGCICMTF-DLRGHEGYASMRQSVTR----A 79
Query: 540 NCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDML 599
DD +A + L S Y + + + G S GG L +RP + + D
Sbjct: 80 QNLDDIKAAYDQLASLPYVDAHSIAVVGLSYGGYLSALLTRERPVEWLALRSPALYKDAH 139
Query: 600 RYHKFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADH 659
+ +D + L + ++ LL+ A++
Sbjct: 140 WDQPKV---SLNADPDLMDYRRRALAPGDNLALAACAQ---------YKGD-VLLVEAEN 186
Query: 660 DDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPT--QKMIDEAAD 717
D V + R+ A H + + Q+ D
Sbjct: 187 DVIVPHPVMRNYADAF-----------TNARSLTSRVIAGADHALSVKEHQQEYTRALID 235
Query: 718 RYGFMAKMLGAS 729
++ +M+
Sbjct: 236 ---WLTEMVVGR 244
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} Length = 741 | Back alignment and structure |
|---|
Score = 62.8 bits (153), Expect = 2e-10
Identities = 43/231 (18%), Positives = 78/231 (33%), Gaps = 39/231 (16%)
Query: 456 VPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNI-SVTPSFSVSRTIL----MRHL 510
+ + DG T + ++ +P +Y YGG +VT S+ L +
Sbjct: 492 LTAADGKTPLNYSVIKPAGFDPAKRYPVAVYVYGGPASQTVTDSWPGRGDHLFNQYLAQQ 551
Query: 511 G-AVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGS 569
G VF + N RG G ++ + D + +L + ++ ++G S
Sbjct: 552 GYVVFSLDN-RGTPRRGRDFGGALYGKQGTVEVADQLRGVAWLKQQPWVDPARIGVQGWS 610
Query: 570 NGGLLVGACINQRPDLFGCALAHVGVMDML--------RYHKFTIGHAWVSDFGCSEEEE 621
NGG + + + D + C +A V D RY +
Sbjct: 611 NGGYMTLMLLAKASDSYACGVAGAPVTDWGLYDSHYTERYM------------DLPARND 658
Query: 622 EFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLL 672
Y + L ++ + P LL+ DD V+ +S L+
Sbjct: 659 AGY--REARVLTHI-----EGLRSPL-----LLIHGMADDNVLFTNSTSLM 697
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 Length = 723 | Back alignment and structure |
|---|
Score = 59.1 bits (143), Expect = 4e-09
Identities = 41/233 (17%), Positives = 72/233 (30%), Gaps = 39/233 (16%)
Query: 455 FVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGG-FNISVTPSFSVS-RTILMRHLG- 511
+ + +PM I+ +P LL G + SV F VS T+++ G
Sbjct: 470 YRDIEIDDYNLPMQILKPATFTDTTHYPLLLVVDGTPGSQSVAEKFEVSWETVMVSSHGA 529
Query: 512 AVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNG 571
V RG G G + D + A ++ Y ++ + G G
Sbjct: 530 VVVKCDG-RGSGFQGTKLLHEVRRRLGLLEEKDQMEAVRTMLKEQYIDRTRVAVFGKDYG 588
Query: 572 GLLVGACINQRPD----LFGCALAHVGVMDML--------RYHKFTIGHAWVSDFGCSEE 619
G L + + + F C A + D RY G
Sbjct: 589 GYLSTYILPAKGENQGQTFTCGSALSPITDFKLYASAFSERYL------------GLHGL 636
Query: 620 EEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLL 672
+ Y H V ++ F L++ D+++ H+ +L+
Sbjct: 637 DNRAY--EMTKVAHRV----SALEEQQF-----LIIHPTADEKIHFQHTAELI 678
|
| >1vlq_A Acetyl xylan esterase; TM0077, structural genomics, JCSG, PR structure initiative, PSI, joint center for structural GENO hydrolase; 2.10A {Thermotoga maritima} SCOP: c.69.1.25 PDB: 3m81_A 3m83_A* 3m82_A* Length = 337 | Back alignment and structure |
|---|
Score = 53.0 bits (127), Expect = 1e-07
Identities = 38/253 (15%), Positives = 64/253 (25%), Gaps = 53/253 (20%)
Query: 444 FDRSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLY--GYGGFNISVTPSFSV 501
+ V G I +++ K + PC++ GY G F
Sbjct: 61 SHLKTVEAYDVTFSGYRGQR-IKGWLLVPKLEE--EKLPCVVQYIGYNG-----GRGFPH 112
Query: 502 SRTILMRHLGAVFCIANIRGGGEYGEE-----------------WHKGGALAKKQ----N 540
F + + RG G + + G L +
Sbjct: 113 DWLFWPSMGYICFVM-DTRGQGSGWLKGDTPDYPEGPVDPQYPGFMTRGILDPRTYYYRR 171
Query: 541 CFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLR 600
F D + A E S ++ I GGS GG + A + R
Sbjct: 172 VFTDAVRAVEAAASFPQVDQERIVIAGGSQGGGIALAVSALSKKAKALLCDVPFLCHFRR 231
Query: 601 YHKFTIGHAWVSDF----GCSEEEEEFYWLIKY-SPLHNVRR---PWEQNPDKPFQYPST 652
+ H + ++EE + + Y ++ R P
Sbjct: 232 AVQLVDTHPYAEITNFLKTHRDKEEIVFRTLSYFDGVNFAARAKIP-------------A 278
Query: 653 LLLTADHDDRVVP 665
L D+ P
Sbjct: 279 LFSVGLMDNICPP 291
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 53.3 bits (127), Expect = 2e-07
Identities = 79/571 (13%), Positives = 162/571 (28%), Gaps = 163/571 (28%)
Query: 217 YHEFYYHFLGTKQSEDILCWKD------------------PEHPKYIFSGHVTEDGQYLV 258
+H ++H + + E +KD + PK I S +
Sbjct: 1 HH--HHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDH----- 53
Query: 259 MCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTF 318
I + D V+ + L + E +K FV+ + Y+ F
Sbjct: 54 --IIMSKDAVSGTLRLFWTLLSKQEEMVQK------FVE--EVLRINYK----------F 93
Query: 319 LTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSY-LSDVKYVLQI 377
L + I+ + ++P+ + +RD L N NQ+ Y +S ++ L++
Sbjct: 94 LMSP-------IKTEQRQPSMMTRMY-IEQRDRLY-----NDNQVFAKYNVSRLQPYLKL 140
Query: 378 RD----LKNGS--LLHQLPIEIG---SVNAISARREDSVVFISFTSFLIPGIVY-----Q 423
R L+ L+ + G + A+ V ++
Sbjct: 141 RQALLELRPAKNVLIDGVL---GSGKTWVALDVCLSYKVQ----CKM--DFKIFWLNLKN 191
Query: 424 CNLKTETPEM-KIFRETIIPGFDRSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHP 482
CN EM + I P + H + + ++ + SK +
Sbjct: 192 CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP-------YE 244
Query: 483 -CLL-----YGYGGFNISVTPSFSVSRTILM--RHLGAVFCIANIRGGGEYGEEWHKG-- 532
CLL N +F++S IL+ R ++ +
Sbjct: 245 NCLLVLLNVQ-----NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT 299
Query: 533 -----GALAKKQNC-FDDF----ISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQR 582
L K +C D ++ + +S ++ I
Sbjct: 300 PDEVKSLLLKYLDCRPQDLPREVLTTNPRRLS-------------------IIAESIRDG 340
Query: 583 PDLFGCALAHVGVMDMLRYHKFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRP---- 638
+ HV + + ++ + E + + + P + P
Sbjct: 341 LATWD-NWKHVNCDKLTTIIESSL------NVLEPAEYRKMFDRLSVFP-PSAHIPTILL 392
Query: 639 ---W-EQNPDKPFQYPSTL----LLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTN 690
W + + L L+ + + + S+ L L LEN +
Sbjct: 393 SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLE------LKVKLENEYALH 446
Query: 691 PIIGRIERKAGHGVGLPTQKMIDEAADRYGF 721
I ++ + +I D+Y +
Sbjct: 447 RSI--VDHYNIP-KTFDSDDLIPPYLDQYFY 474
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 49.1 bits (116), Expect = 5e-06
Identities = 48/432 (11%), Positives = 105/432 (24%), Gaps = 109/432 (25%)
Query: 17 RRDESVVDDYHGVKIVDPYRWLEDPDAEEVKDFVQKQVELTDSVLKNCDVRDKLREKITK 76
+ E +V + + Y++L P E + + RD+L
Sbjct: 73 SKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQ-------RDRLYNDNQV 125
Query: 77 LFDSPRYDAPFKRGNKYFYFHNTGLQPQSVLYVQDSLDAKA---KVLLDPNTLSDDGTAA 133
+Y+ R Y L+ + V +D K + +
Sbjct: 126 F---AKYNVS--RLQPYLKLRQALLELRPAKNV--LIDGVLGSGKTWVALDVCLSYKV-- 176
Query: 134 LIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWFKFSSIAWTHDSKGFF 193
+ + W +K + ++E ++ S+
Sbjct: 177 ---QCKMDFKIF-----------WLNLKNCNSPETVLEMLQKLLYQIDP---NWTSRSDH 219
Query: 194 YSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDIL--CWKDPEHPKYIFSGH-- 249
S + L Y + +L + + F+
Sbjct: 220 SSNIKLRIH-----SIQAELRRLLKSKPY-----ENCLLVLLNVQ-NAKAWNA-FNLSCK 267
Query: 250 ---VTED---------GQYLVMCIEENCDPVN---------KVYYCDLSALPE------- 281
T + ++ + + K C LP
Sbjct: 268 ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP 327
Query: 282 ---GLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYK-------IIR 331
+ RDGL D + + + L + +Y+ +
Sbjct: 328 RRLSIIAESIRDGL----ATWDNWK-HVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFP 382
Query: 332 VDLKEPND-----WFEVIPEAERDVLE-----SATAVNLNQMIVSYLS-DVKYVLQIRDL 380
P WF+VI V+ S + +S S ++ +++ +
Sbjct: 383 PSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENE 442
Query: 381 KNGSLLHQLPIE 392
LH+ ++
Sbjct: 443 YA---LHRSIVD 451
|
| >3hlk_A Acyl-coenzyme A thioesterase 2, mitochondrial; alpha/beta hydrolase, alternative splicing, hydrolase, mitochondrion, polymorphism, serine esterase; 2.10A {Homo sapiens} Length = 446 | Back alignment and structure |
|---|
Score = 49.8 bits (118), Expect = 2e-06
Identities = 44/294 (14%), Positives = 82/294 (27%), Gaps = 43/294 (14%)
Query: 444 FDRSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSR 503
+R P + G + +F+ G P ++ +G R
Sbjct: 142 HERYFLPPGVRREPVRVGRVRGTLFL-----PPEPGPFPGIVDMFGT-----GGGLLEYR 191
Query: 504 TILMRHLG-AVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSRK 562
L+ G AV +A + + F A YL+S +
Sbjct: 192 ASLLAGKGFAVMALAYYNYED-LPKTMETLH--------LEYFEEAMNYLLSHPEVKGPG 242
Query: 563 LCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDM---LRYHKFTIGHAWVSDFGCSEE 619
+ + G S GG L + + + + + V ++ LRY T+ V+
Sbjct: 243 VGLLGISKGGELCLSMASFLKGITAAVVINGSVANVGGTLRYKGETLPPVGVNRNRIKVT 302
Query: 620 EEEFYWLIKY------SPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLA 673
++ + ++ P P E + F L L D
Sbjct: 303 KDGYADIVDVLNSPLEGPDQKSFIPVE-RAESTF-----LFLVGQDDHNWKS-------E 349
Query: 674 TMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLG 727
C L+ + P I + GH + P + + + G
Sbjct: 350 FYANEACKRLQAHGRRKPQIICYP-ETGHYIEPPYFPLCRASLHALVGSPIIWG 402
|
| >3k2i_A Acyl-coenzyme A thioesterase 4; alpha/beta hydrolase fold seven-stranded beta-sandwich, structural genomics, structural genomics consortium, SGC; 2.40A {Homo sapiens} Length = 422 | Back alignment and structure |
|---|
Score = 48.3 bits (114), Expect = 5e-06
Identities = 30/261 (11%), Positives = 64/261 (24%), Gaps = 42/261 (16%)
Query: 479 GSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKK 538
G P ++ +G R L+ G +
Sbjct: 156 GPFPGIIDIFGI-----GGGLLEYRASLLAGHGFATLALAYYNFEDLPNNMDNIS----- 205
Query: 539 QNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALA---HVGV 595
+ F A Y++ + + + G S G + + + ++ +
Sbjct: 206 ---LEYFEEAVCYMLQHPQVKGPGIGLLGISLGADICLSMASFLKNVSATVSINGSGISG 262
Query: 596 MDMLRYHKFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPST--- 652
+ Y +I + + +S L ++ ++ PS
Sbjct: 263 NTAINYKHSSIPPLG---------YDLRRIKVAFSGLVDIVDIRN-ALVGGYKNPSMIPI 312
Query: 653 ------LLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGL 706
+LL DD + L+ + P I GH +
Sbjct: 313 EKAQGPILLIVGQDDHNWR------SELYAQTVSERLQAHGKEKPQI-ICYPGTGHYIEP 365
Query: 707 PTQKMIDEAADRYGFMAKMLG 727
P + + R + G
Sbjct: 366 PYFPLCPASLHRLLNKHVIWG 386
|
| >2jbw_A Dhpon-hydrolase, 2,6-dihydroxy-pseudo-oxynicotine hydrolase; alpha/beta hydrolase, META-cleavage pathway; 2.1A {Arthrobacter nicotinovorans} SCOP: c.69.1.41 Length = 386 | Back alignment and structure |
|---|
Score = 44.2 bits (104), Expect = 1e-04
Identities = 39/233 (16%), Positives = 67/233 (28%), Gaps = 27/233 (11%)
Query: 443 GFDRSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVS 502
+ + DG +P+++ + G HP ++ GG + SF +
Sbjct: 119 AAPLLSPPAERHELVV-DGIP-MPVYVRIPEG---PGPHPAVIML-GGLESTKEESFQME 172
Query: 503 RTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSRK 562
+L R G + G GE E G + + + L ++
Sbjct: 173 NLVLDR--GMATATFDGPGQGEMFEYKRIAG------DYEKYTSAVVDLLTKLEAIRNDA 224
Query: 563 LCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFT--IGHAWVSDFGCSEEE 620
+ + G S GG P L C + G D+ + T +W E
Sbjct: 225 IGVLGRSLGGNYALKSAACEPRLAACI-SWGGFSDLDYWDLETPLTKESWKYVSKVDTLE 283
Query: 621 EEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLA 673
E + +V P T +L D V +L
Sbjct: 284 EARLHVHAALETRDVLS----QIACP-----TYILHGV-HDEVPLSFVDTVLE 326
|
| >3doh_A Esterase; alpha-beta hydrolase, beta sheet; 2.60A {Thermotoga maritima} PDB: 3doi_A Length = 380 | Back alignment and structure |
|---|
Score = 41.6 bits (97), Expect = 7e-04
Identities = 14/87 (16%), Positives = 26/87 (29%)
Query: 518 NIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGA 577
+ + + I L+ ++ I G S GG
Sbjct: 220 QCPPNSSWSTLFTDRENPFNPEKPLLAVIKIIRKLLDEYNIDENRIYITGLSMGGYGTWT 279
Query: 578 CINQRPDLFGCALAHVGVMDMLRYHKF 604
I + P+LF A+ G D+ + +
Sbjct: 280 AIMEFPELFAAAIPICGGGDVSKVERI 306
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 732 | |||
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 100.0 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 100.0 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 100.0 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 100.0 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 100.0 | |
| 4hvt_A | 711 | Ritya.17583.B, post-proline cleaving enzyme; ssgci | 100.0 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 100.0 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 100.0 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 100.0 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 100.0 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 100.0 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 100.0 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 100.0 | |
| 2jbw_A | 386 | Dhpon-hydrolase, 2,6-dihydroxy-pseudo-oxynicotine | 99.92 | |
| 1vlq_A | 337 | Acetyl xylan esterase; TM0077, structural genomics | 99.91 | |
| 3hxk_A | 276 | Sugar hydrolase; alpha-beta protein., structural g | 99.91 | |
| 3ga7_A | 326 | Acetyl esterase; phosphoserine, IDP00896, hydrolas | 99.91 | |
| 3bxp_A | 277 | Putative lipase/esterase; putative carboxylesteras | 99.9 | |
| 2o7r_A | 338 | CXE carboxylesterase; alpha/beta hydrolase; 1.40A | 99.9 | |
| 4ao6_A | 259 | Esterase; hydrolase, thermo label; 1.60A {Unidenti | 99.9 | |
| 3f67_A | 241 | Putative dienelactone hydrolase; alpha-beta-alpha | 99.9 | |
| 3doh_A | 380 | Esterase; alpha-beta hydrolase, beta sheet; 2.60A | 99.89 | |
| 1l7a_A | 318 | Cephalosporin C deacetylase; structural genomics, | 99.89 | |
| 3ebl_A | 365 | Gibberellin receptor GID1; alpha/beta hydrolase, l | 99.88 | |
| 3bjr_A | 283 | Putative carboxylesterase; structural genomics, jo | 99.88 | |
| 3qh4_A | 317 | Esterase LIPW; structural genomics, ssgcid, seattl | 99.88 | |
| 3fak_A | 322 | Esterase/lipase, ESTE5; HSL, hydrolase; 1.90A {Unc | 99.88 | |
| 1mpx_A | 615 | Alpha-amino acid ester hydrolase; alpha/beta hydro | 99.87 | |
| 3ls2_A | 280 | S-formylglutathione hydrolase; psychrophilic organ | 99.87 | |
| 3fcy_A | 346 | Xylan esterase 1; alpha/beta hydrolase, carbohydra | 99.87 | |
| 3i6y_A | 280 | Esterase APC40077; lipase, structural genomics, PS | 99.87 | |
| 2b9v_A | 652 | Alpha-amino acid ester hydrolase; catalytic triad, | 99.87 | |
| 2zsh_A | 351 | Probable gibberellin receptor GID1L1; plant hormon | 99.87 | |
| 3k2i_A | 422 | Acyl-coenzyme A thioesterase 4; alpha/beta hydrola | 99.87 | |
| 3fcx_A | 282 | FGH, esterase D, S-formylglutathione hydrolase; re | 99.87 | |
| 3e4d_A | 278 | Esterase D; S-formylglutathione hydrolase, hydrola | 99.86 | |
| 3ain_A | 323 | 303AA long hypothetical esterase; carboxylesterase | 99.86 | |
| 2hm7_A | 310 | Carboxylesterase; alpha/beta hydrolase fold, hydro | 99.86 | |
| 3hlk_A | 446 | Acyl-coenzyme A thioesterase 2, mitochondrial; alp | 99.86 | |
| 1lzl_A | 323 | Heroin esterase; alpha/beta hydrolase; 1.30A {Rhod | 99.86 | |
| 1zi8_A | 236 | Carboxymethylenebutenolidase; alpha and beta prote | 99.86 | |
| 2o2g_A | 223 | Dienelactone hydrolase; YP_324580.1, structural ge | 99.85 | |
| 2hdw_A | 367 | Hypothetical protein PA2218; alpha/beta hydrolase | 99.85 | |
| 2wir_A | 313 | Pesta, alpha/beta hydrolase fold-3 domain protein; | 99.85 | |
| 2c7b_A | 311 | Carboxylesterase, ESTE1; carboxyesterase, thermoph | 99.85 | |
| 2i3d_A | 249 | AGR_C_3351P, hypothetical protein ATU1826; structu | 99.85 | |
| 3k6k_A | 322 | Esterase/lipase; alpha/beta hydrolase fold; 2.20A | 99.85 | |
| 3ksr_A | 290 | Putative serine hydrolase; catalytic triad, struct | 99.85 | |
| 4b6g_A | 283 | Putative esterase; hydrolase, formaldehyde detoxif | 99.85 | |
| 4e15_A | 303 | Kynurenine formamidase; alpha/beta hydrolase fold, | 99.84 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.84 | |
| 1jkm_A | 361 | Brefeldin A esterase; serine hydrolase, degradatio | 99.84 | |
| 2wtm_A | 251 | EST1E; hydrolase; 1.60A {Clostridium proteoclastic | 99.83 | |
| 1jjf_A | 268 | Xylanase Z, endo-1,4-beta-xylanase Z, 1,4-beta-D-x | 99.83 | |
| 2uz0_A | 263 | Esterase, tributyrin esterase; alpha/beta hydrolas | 99.82 | |
| 3fnb_A | 405 | Acylaminoacyl peptidase SMU_737; alpha-beta-alpha | 99.82 | |
| 4h0c_A | 210 | Phospholipase/carboxylesterase; PSI-biology, midwe | 99.82 | |
| 3trd_A | 208 | Alpha/beta hydrolase; cellular processes; 1.50A {C | 99.82 | |
| 3pfb_A | 270 | Cinnamoyl esterase; alpha/beta hydrolase fold, hyd | 99.82 | |
| 1sfr_A | 304 | Antigen 85-A; alpha/beta hydrolase, structural gen | 99.81 | |
| 1jji_A | 311 | Carboxylesterase; alpha-beta hydrolase fold, hydro | 99.81 | |
| 1jfr_A | 262 | Lipase; serine hydrolase; 1.90A {Streptomyces exfo | 99.81 | |
| 1lns_A | 763 | X-prolyl dipeptidyl aminopetidase; alpha beta hydr | 99.81 | |
| 2fuk_A | 220 | XC6422 protein; A/B hydrolase, structural genomics | 99.8 | |
| 3vis_A | 306 | Esterase; alpha/beta-hydrolase fold, polyethylene | 99.8 | |
| 3hju_A | 342 | Monoglyceride lipase; alpha/beta hydrolase, hydrol | 99.8 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.8 | |
| 3h04_A | 275 | Uncharacterized protein; protein with unknown func | 99.8 | |
| 4fbl_A | 281 | LIPS lipolytic enzyme; thermostable, structural ge | 99.79 | |
| 2pbl_A | 262 | Putative esterase/lipase/thioesterase; alpha/beta- | 99.79 | |
| 3d7r_A | 326 | Esterase; alpha/beta fold, hydrolase; 2.01A {Staph | 99.79 | |
| 1r88_A | 280 | MPT51/MPB51 antigen; ALFA/beta hydrolase fold, FBP | 99.78 | |
| 3mve_A | 415 | FRSA, UPF0255 protein VV1_0328; FRSA,fermentation/ | 99.78 | |
| 4fhz_A | 285 | Phospholipase/carboxylesterase; alpha/beta hydrola | 99.78 | |
| 3og9_A | 209 | Protein YAHD A copper inducible hydrolase; alpha/b | 99.78 | |
| 4ezi_A | 377 | Uncharacterized protein; alpha-beta hydrolases fol | 99.78 | |
| 3llc_A | 270 | Putative hydrolase; structural genomics, joint cen | 99.78 | |
| 1vkh_A | 273 | Putative serine hydrolase; structural genomics, jo | 99.78 | |
| 3d0k_A | 304 | Putative poly(3-hydroxybutyrate) depolymerase LPQ; | 99.77 | |
| 3iii_A | 560 | COCE/NOND family hydrolase; structural genomics, c | 99.77 | |
| 2qm0_A | 275 | BES; alpha-beta structure, structural genomics, PS | 99.77 | |
| 1ufo_A | 238 | Hypothetical protein TT1662; alpha-beta fold, hydr | 99.77 | |
| 3pe6_A | 303 | Monoglyceride lipase; alpha-beta hydrolase fold, 2 | 99.77 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.76 | |
| 1dqz_A | 280 | 85C, protein (antigen 85-C); fibronectin, structur | 99.76 | |
| 1fj2_A | 232 | Protein (acyl protein thioesterase 1); alpha/beta | 99.75 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.75 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.75 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.75 | |
| 3u0v_A | 239 | Lysophospholipase-like protein 1; alpha, beta hydr | 99.75 | |
| 3b5e_A | 223 | MLL8374 protein; NP_108484.1, carboxylesterase, st | 99.74 | |
| 1auo_A | 218 | Carboxylesterase; hydrolase; 1.80A {Pseudomonas fl | 99.74 | |
| 3rm3_A | 270 | MGLP, thermostable monoacylglycerol lipase; alpha/ | 99.74 | |
| 3cn9_A | 226 | Carboxylesterase; alpha/beta hydrolase fold super- | 99.74 | |
| 2r8b_A | 251 | AGR_C_4453P, uncharacterized protein ATU2452; APC6 | 99.73 | |
| 3dkr_A | 251 | Esterase D; alpha beta hydrolase, mechanism, catal | 99.73 | |
| 3bdi_A | 207 | Uncharacterized protein TA0194; NP_393672.1, predi | 99.73 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.73 | |
| 4f0j_A | 315 | Probable hydrolytic enzyme; alpha/beta hydrolase f | 99.72 | |
| 1gkl_A | 297 | Endo-1,4-beta-xylanase Y; hydrolase, esterase fami | 99.72 | |
| 4f21_A | 246 | Carboxylesterase/phospholipase family protein; str | 99.72 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.71 | |
| 2h1i_A | 226 | Carboxylesterase; structural genomics, PSI-2, prot | 99.71 | |
| 4fle_A | 202 | Esterase; structural genomics, PSI-biology, northe | 99.71 | |
| 1k8q_A | 377 | Triacylglycerol lipase, gastric; APHA beta hydrola | 99.71 | |
| 3g8y_A | 391 | SUSD/RAGB-associated esterase-like protein; struct | 99.71 | |
| 3i2k_A | 587 | Cocaine esterase; alpha/beta hydrolase, hydrolase; | 99.71 | |
| 2qru_A | 274 | Uncharacterized protein; alpha/beta-hydrolase, str | 99.71 | |
| 1tht_A | 305 | Thioesterase; 2.10A {Vibrio harveyi} SCOP: c.69.1. | 99.71 | |
| 3nuz_A | 398 | Putative acetyl xylan esterase; structural genomic | 99.7 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.7 | |
| 3h2g_A | 397 | Esterase; xanthomonas oryzae PV. oryzae, cell WALL | 99.7 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.69 | |
| 3d59_A | 383 | Platelet-activating factor acetylhydrolase; secret | 99.69 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.68 | |
| 2qjw_A | 176 | Uncharacterized protein XCC1541; putative hydrolas | 99.68 | |
| 3c8d_A | 403 | Enterochelin esterase; alpha-beta-alpha sandwich, | 99.68 | |
| 2fx5_A | 258 | Lipase; alpha-beta hydrolase; HET: TLA; 1.80A {Pse | 99.67 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.67 | |
| 2gzs_A | 278 | IROE protein; enterobactin, salmochelin, DFP, hydr | 99.66 | |
| 3ia2_A | 271 | Arylesterase; alpha-beta hydrolase fold, transitio | 99.65 | |
| 3guu_A | 462 | Lipase A; protein structure, hydrolase; HET: 1PE; | 99.65 | |
| 2y6u_A | 398 | Peroxisomal membrane protein LPX1; hydrolase, puta | 99.65 | |
| 1qlw_A | 328 | Esterase; anisotropic refinement, atomic resolutio | 99.65 | |
| 3vdx_A | 456 | Designed 16NM tetrahedral protein CAGE containing | 99.65 | |
| 2pl5_A | 366 | Homoserine O-acetyltransferase; alpha/beta hydrola | 99.64 | |
| 3kxp_A | 314 | Alpha-(N-acetylaminomethylene)succinic acid hydrol | 99.64 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.63 | |
| 3r0v_A | 262 | Alpha/beta hydrolase fold protein; structural geno | 99.63 | |
| 2qs9_A | 194 | Retinoblastoma-binding protein 9; B5T overexpresse | 99.62 | |
| 1uxo_A | 192 | YDEN protein; hydrolase, A/B hydrolase, esterase, | 99.62 | |
| 3u1t_A | 309 | DMMA haloalkane dehalogenase; alpha/beta-hydrolase | 99.62 | |
| 3oos_A | 278 | Alpha/beta hydrolase family protein; APC67239.0, p | 99.62 | |
| 3i1i_A | 377 | Homoserine O-acetyltransferase; structural genomic | 99.62 | |
| 1imj_A | 210 | CIB, CCG1-interacting factor B; alpha/beta hydrola | 99.62 | |
| 1brt_A | 277 | Bromoperoxidase A2; haloperoxidase, oxidoreductase | 99.61 | |
| 1a8s_A | 273 | Chloroperoxidase F; haloperoxidase, oxidoreductase | 99.61 | |
| 1a8q_A | 274 | Bromoperoxidase A1; haloperoxidase, oxidoreductase | 99.61 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.61 | |
| 3v48_A | 268 | Aminohydrolase, putative aminoacrylate hydrolase R | 99.6 | |
| 3e0x_A | 245 | Lipase-esterase related protein; APC60309, clostri | 99.59 | |
| 3dqz_A | 258 | Alpha-hydroxynitrIle lyase-like protein; A/B-hydrl | 99.59 | |
| 3i28_A | 555 | Epoxide hydrolase 2; aromatic hydrocarbons catabol | 99.59 | |
| 3fob_A | 281 | Bromoperoxidase; structural genomics, IDP00046, ba | 99.59 | |
| 4dnp_A | 269 | DAD2; alpha/beta hydrolase, hydrolase; 2.15A {Petu | 99.59 | |
| 3fsg_A | 272 | Alpha/beta superfamily hydrolase; PF00561, MCSG, P | 99.58 | |
| 3qit_A | 286 | CURM TE, polyketide synthase; thioesterase, alpha/ | 99.58 | |
| 1mtz_A | 293 | Proline iminopeptidase; alpha-beta hydrolase, CAP | 99.58 | |
| 1a88_A | 275 | Chloroperoxidase L; haloperoxidase, oxidoreductase | 99.58 | |
| 2ocg_A | 254 | Valacyclovir hydrolase; alpha beta hydrolase fold; | 99.58 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.58 | |
| 1qe3_A | 489 | PNB esterase, para-nitrobenzyl esterase; alpha-bet | 99.58 | |
| 3hss_A | 293 | Putative bromoperoxidase; alpha beta hydrolase, ox | 99.58 | |
| 1zoi_A | 276 | Esterase; alpha/beta hydrolase fold; 1.60A {Pseudo | 99.58 | |
| 3qvm_A | 282 | OLEI00960; structural genomics, PSI-biology, midwe | 99.57 | |
| 3sty_A | 267 | Methylketone synthase 1; alpha/beta hydrolase, dec | 99.57 | |
| 2yys_A | 286 | Proline iminopeptidase-related protein; TTHA1809, | 99.57 | |
| 1tqh_A | 247 | Carboxylesterase precursor; tetrahedral intermedia | 99.57 | |
| 3om8_A | 266 | Probable hydrolase; structural genomics, PSI-2, pr | 99.57 | |
| 1ycd_A | 243 | Hypothetical 27.3 kDa protein in AAP1-SMF2 interge | 99.56 | |
| 1q0r_A | 298 | RDMC, aclacinomycin methylesterase; anthracycline, | 99.56 | |
| 1iup_A | 282 | META-cleavage product hydrolase; aromatic compound | 99.56 | |
| 1wm1_A | 317 | Proline iminopeptidase; complex with inhibitor, hy | 99.56 | |
| 4g9e_A | 279 | AHL-lactonase, alpha/beta hydrolase fold protein; | 99.56 | |
| 2r11_A | 306 | Carboxylesterase NP; 2632844, putative hydrolase, | 99.56 | |
| 2xua_A | 266 | PCAD, 3-oxoadipate ENOL-lactonase; hydrolase, cate | 99.55 | |
| 1j1i_A | 296 | META cleavage compound hydrolase; carbazole degrad | 99.55 | |
| 2b61_A | 377 | Homoserine O-acetyltransferase; acyl-enzyme, aspar | 99.55 | |
| 1hkh_A | 279 | Gamma lactamase; hydrolase, alpha/beta hydrolase, | 99.55 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.54 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.54 | |
| 3bdv_A | 191 | Uncharacterized protein DUF1234; DUF1234 family pr | 99.54 | |
| 2puj_A | 286 | 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrola; | 99.53 | |
| 3g9x_A | 299 | Haloalkane dehalogenase; alpha/beta hydrolase, hel | 99.53 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.53 | |
| 1azw_A | 313 | Proline iminopeptidase; aminopeptidase, serine pro | 99.52 | |
| 3nwo_A | 330 | PIP, proline iminopeptidase; structural genomics, | 99.52 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.52 | |
| 3gff_A | 331 | IROE-like serine hydrolase; NP_718593.1, structura | 99.52 | |
| 1c4x_A | 285 | BPHD, protein (2-hydroxy-6-OXO-6-phenylhexa-2,4-di | 99.52 | |
| 2vat_A | 444 | Acetyl-COA--deacetylcephalosporin C acetyltransfer | 99.52 | |
| 1u2e_A | 289 | 2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase | 99.51 | |
| 3r40_A | 306 | Fluoroacetate dehalogenase; FACD, defluorinase, al | 99.51 | |
| 2qvb_A | 297 | Haloalkane dehalogenase 3; RV2579, alpha-beta hydr | 99.5 | |
| 3p2m_A | 330 | Possible hydrolase; alpha/beta hydrolase superfami | 99.5 | |
| 2e3j_A | 356 | Epoxide hydrolase EPHB; epoxide hydrolase B, struc | 99.5 | |
| 2q0x_A | 335 | Protein DUF1749, uncharacterized protein; alpha/be | 99.49 | |
| 2cjp_A | 328 | Epoxide hydrolase; HET: PG4 VPR; 1.95A {Solanum tu | 99.49 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.48 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 99.48 | |
| 1mj5_A | 302 | 1,3,4,6-tetrachloro-1,4-cyclohexadiene hydrolase; | 99.48 | |
| 2rau_A | 354 | Putative esterase; NP_343859.1, putative lipase, s | 99.48 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.48 | |
| 2xmz_A | 269 | Hydrolase, alpha/beta hydrolase fold family; menaq | 99.48 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 99.48 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.48 | |
| 3kda_A | 301 | CFTR inhibitory factor (CIF); alpha/beta hydrolase | 99.47 | |
| 3bf7_A | 255 | Esterase YBFF; thioesterase, helical CAP, hydrolas | 99.47 | |
| 1isp_A | 181 | Lipase; alpha/beta hydrolase fold, hydrolase; 1.30 | 99.47 | |
| 2wue_A | 291 | 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrolas | 99.46 | |
| 3bwx_A | 285 | Alpha/beta hydrolase; YP_496220.1, joint center fo | 99.46 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 99.46 | |
| 1wom_A | 271 | RSBQ, sigma factor SIGB regulation protein RSBQ; a | 99.45 | |
| 1xkl_A | 273 | SABP2, salicylic acid-binding protein 2; alpha-bet | 99.45 | |
| 2xt0_A | 297 | Haloalkane dehalogenase; hydrolase, alpha-beta hyd | 99.45 | |
| 2wfl_A | 264 | Polyneuridine-aldehyde esterase; alkaloid metaboli | 99.45 | |
| 1b6g_A | 310 | Haloalkane dehalogenase; hydrolase, alpha/beta-hyd | 99.45 | |
| 2qmq_A | 286 | Protein NDRG2, protein NDR2; alpha/beta-hydrolases | 99.45 | |
| 3afi_E | 316 | Haloalkane dehalogenase; A/B-hydrolase, hydrolase; | 99.44 | |
| 3fla_A | 267 | RIFR; alpha-beta hydrolase thioesterase, hydrolase | 99.44 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.44 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.44 | |
| 4fol_A | 299 | FGH, S-formylglutathione hydrolase; D-type esteras | 99.43 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 99.43 | |
| 3pic_A | 375 | CIP2; alpha/beta hydrolase fold, glucuronoyl ester | 99.43 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 99.42 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.42 | |
| 1m33_A | 258 | BIOH protein; alpha-betta-alpha sandwich, structur | 99.42 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 99.42 | |
| 1pja_A | 302 | Palmitoyl-protein thioesterase 2 precursor; hydrol | 99.41 | |
| 1ukc_A | 522 | ESTA, esterase; fungi, A/B hydrolase fold, acetylc | 99.41 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.41 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 99.4 | |
| 4g4g_A | 433 | 4-O-methyl-glucuronoyl methylesterase; alpha/beta | 99.4 | |
| 3c6x_A | 257 | Hydroxynitrilase; atomic resolution, hydroxynitril | 99.4 | |
| 1ehy_A | 294 | Protein (soluble epoxide hydrolase); alpha/beta hy | 99.4 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.39 | |
| 2d81_A | 318 | PHB depolymerase; alpha/beta hydrolase fold, circu | 99.39 | |
| 3ibt_A | 264 | 1H-3-hydroxy-4-oxoquinoline 2,4-dioxygenase; QDO, | 99.39 | |
| 2psd_A | 318 | Renilla-luciferin 2-monooxygenase; alpha/beta-hydr | 99.37 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 99.37 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 99.36 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.36 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 99.36 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 99.36 | |
| 3b12_A | 304 | Fluoroacetate dehalogenase; dehalogease, hydrolase | 99.05 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.35 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 99.35 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 99.35 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.34 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 99.34 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 99.34 | |
| 3l80_A | 292 | Putative uncharacterized protein SMU.1393C; alpha/ | 99.33 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.33 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.33 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 99.33 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.33 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 99.32 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 99.32 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 99.31 | |
| 3qmv_A | 280 | Thioesterase, REDJ; alpha/beta hydrolase fold, hyd | 99.31 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 99.31 | |
| 1r3d_A | 264 | Conserved hypothetical protein VC1974; structural | 99.31 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.3 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 99.29 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.28 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 99.28 | |
| 4i19_A | 388 | Epoxide hydrolase; structural genomics, PSI-biolog | 99.28 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 99.28 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.27 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 99.27 | |
| 1thg_A | 544 | Lipase; hydrolase(carboxylic esterase); HET: NAG N | 99.27 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 99.26 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 99.26 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 99.25 | |
| 1llf_A | 534 | Lipase 3; candida cylindracea cholesterol esterase | 99.25 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 99.24 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 99.23 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 99.23 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.23 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 99.22 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 99.22 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 99.22 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 99.21 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 99.21 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 99.2 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 99.19 | |
| 2wj6_A | 276 | 1H-3-hydroxy-4-oxoquinaldine 2,4-dioxygenase; oxid | 99.18 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.18 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 99.18 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 99.18 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.18 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.18 | |
| 3qyj_A | 291 | ALR0039 protein; alpha/beta fold, hydrolase; 1.78A | 99.17 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 99.17 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 99.17 | |
| 2ogt_A | 498 | Thermostable carboxylesterase EST50; alpha/beta hy | 99.17 | |
| 3fle_A | 249 | SE_1780 protein; structural genomics, APC61035.1, | 99.16 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 99.16 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 99.15 | |
| 2h7c_A | 542 | Liver carboxylesterase 1; enzyme, cholesteryl este | 99.15 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 99.15 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 99.15 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 99.14 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 99.14 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.14 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 99.13 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 99.12 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 99.12 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 99.11 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.11 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 99.11 | |
| 3ds8_A | 254 | LIN2722 protein; unkonwn function, structural geno | 99.11 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.09 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 99.09 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.09 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.08 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.07 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 99.06 | |
| 3c5v_A | 316 | PME-1, protein phosphatase methylesterase 1; demet | 99.06 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 99.06 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.05 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.05 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 99.05 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.05 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.04 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 99.04 | |
| 3g02_A | 408 | Epoxide hydrolase; alpha/beta hydrolase fold, enan | 99.03 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 99.03 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.03 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 99.02 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.02 | |
| 2ha2_A | 543 | ACHE, acetylcholinesterase; hydrolase fold, serine | 99.02 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.01 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.01 | |
| 1ea5_A | 537 | ACHE, acetylcholinesterase; hydrolase, serine hydr | 99.01 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.01 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 99.0 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.0 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 99.0 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 98.99 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 98.99 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 98.99 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 98.99 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 98.99 | |
| 3ils_A | 265 | PKS, aflatoxin biosynthesis polyketide synthase; A | 98.98 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 98.98 | |
| 1kez_A | 300 | Erythronolide synthase; polyketide synthase, modul | 98.97 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 98.97 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 98.97 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 98.96 | |
| 3lcr_A | 319 | Tautomycetin biosynthetic PKS; alpha-beta hydrolas | 98.96 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 98.95 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 98.94 | |
| 2fj0_A | 551 | JuvenIle hormone esterase; manduca sexta, alpha-be | 98.94 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 98.94 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 98.93 | |
| 1p0i_A | 529 | Cholinesterase; serine hydrolase, butyrate, hydrol | 98.93 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 98.93 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 98.93 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 98.92 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 98.92 | |
| 1tca_A | 317 | Lipase; hydrolase(carboxylic esterase); HET: NAG; | 98.92 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 98.92 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 98.91 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 98.91 | |
| 2k2q_B | 242 | Surfactin synthetase thioesterase subunit; A/B-hyd | 98.91 | |
| 3lp5_A | 250 | Putative cell surface hydrolase; structural genom | 98.9 | |
| 1gpl_A | 432 | RP2 lipase; serine esterase, hydrolase, lipid degr | 98.9 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 98.88 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 98.88 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 98.88 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 98.87 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 98.86 | |
| 2bce_A | 579 | Cholesterol esterase; hydrolase, serine esterase, | 98.86 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 98.85 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 98.85 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 98.85 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 98.84 | |
| 1dx4_A | 585 | ACHE, acetylcholinesterase; hydrolase, serine este | 98.84 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 98.83 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 98.82 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 98.81 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 98.79 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 98.79 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 98.77 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 98.77 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 98.76 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 98.76 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 98.75 | |
| 3bix_A | 574 | Neuroligin-1, neuroligin I; esterase domain, alpha | 98.72 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 98.71 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 98.7 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 98.7 | |
| 1ei9_A | 279 | Palmitoyl protein thioesterase 1; alpha/beta hydro | 98.69 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 98.68 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 98.66 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 98.66 | |
| 1bu8_A | 452 | Protein (pancreatic lipase related protein 2); hyd | 98.65 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 98.65 | |
| 1w52_X | 452 | Pancreatic lipase related protein 2; detergent, cl | 98.62 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 98.61 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 98.61 | |
| 1ex9_A | 285 | Lactonizing lipase; alpha-beta hydrolase fold, pho | 98.6 | |
| 1ys1_X | 320 | Lipase; CIS peptide Leu 234, Ca2+ ION, inhibitor h | 98.6 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 98.59 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 98.58 | |
| 3icv_A | 316 | Lipase B, CALB; circular permutation, cleavage on | 98.58 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 98.57 | |
| 2cb9_A | 244 | Fengycin synthetase; thioesterase, non-ribosomal p | 98.57 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 98.54 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 98.54 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 98.52 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 98.51 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 98.51 | |
| 1hpl_A | 449 | Lipase; hydrolase(carboxylic esterase); 2.30A {Equ | 98.51 | |
| 3n2z_B | 446 | Lysosomal Pro-X carboxypeptidase; alpha/beta hydro | 98.49 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 98.49 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 98.49 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 98.48 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 98.45 | |
| 1rp1_A | 450 | Pancreatic lipase related protein 1; hydrolase, li | 98.43 | |
| 2dst_A | 131 | Hypothetical protein TTHA1544; conserved hypotheti | 98.43 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 98.43 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.43 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 98.43 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 98.4 | |
| 1jmk_C | 230 | SRFTE, surfactin synthetase; thioesterase, non-rib | 98.39 | |
| 2x5x_A | 342 | PHB depolymerase PHAZ7; biopolymers, oxyanion HOLE | 98.38 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 98.36 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 98.34 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 98.33 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 98.28 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 98.26 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 98.25 | |
| 2hfk_A | 319 | Pikromycin, type I polyketide synthase pikaiv; alp | 98.24 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 98.24 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 98.23 | |
| 2zyr_A | 484 | Lipase, putative; fatty acid, hydrolase; HET: 1PE; | 98.23 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.22 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 98.21 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 98.19 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.16 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 98.16 | |
| 3tej_A | 329 | Enterobactin synthase component F; nonribosomal pe | 98.15 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 98.14 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.14 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 98.08 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 98.06 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 98.05 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 98.05 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.01 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 97.97 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 97.97 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 97.95 | |
| 2hih_A | 431 | Lipase 46 kDa form; A1 phospholipase, phospholipid | 97.94 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 97.92 | |
| 3tjm_A | 283 | Fatty acid synthase; thioesterase domain, fatty ac | 97.91 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 97.91 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 97.88 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 97.88 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 97.87 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 97.86 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 97.83 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 97.83 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 97.81 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 97.8 | |
| 2dsn_A | 387 | Thermostable lipase; T1 lipase, hydrolase; 1.50A { | 97.77 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 97.77 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 97.76 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 97.75 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 97.68 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 97.67 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 97.67 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 97.66 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 97.65 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 97.65 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 97.6 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 97.58 | |
| 4ebb_A | 472 | Dipeptidyl peptidase 2; hydrolase; HET: MSE NAG; 2 | 97.58 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 97.58 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 97.57 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 97.53 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 97.5 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 97.47 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 97.46 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 97.46 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 97.45 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 97.44 | |
| 1whs_A | 255 | Serine carboxypeptidase II; HET: NAG FUC; 2.00A {T | 97.42 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 97.39 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 97.29 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 97.28 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 97.28 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 97.28 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 97.23 | |
| 1ivy_A | 452 | Human protective protein; carboxypeptidase, serine | 97.23 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 97.19 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 97.12 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 97.12 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 97.1 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 96.97 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 96.92 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 96.9 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 96.89 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 96.66 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 96.66 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 96.64 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 96.62 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 96.57 |
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-101 Score=892.41 Aligned_cols=680 Identities=41% Similarity=0.744 Sum_probs=587.0
Q ss_pred CCCCCCCCCCCcccccCceeeeecCccccCCCccccCCCCHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCC
Q 004766 4 LSGIDESLQYPVARRDESVVDDYHGVKIVDPYRWLEDPDAEEVKDFVQKQVELTDSVLKNCDVRDKLREKITKLFDSPRY 83 (732)
Q Consensus 4 ~~~~~~~~~~P~~~~~~~~~~~~~g~~~~D~y~wLed~~~~~~~~~l~~qn~~t~~~l~~~~~~~~l~~~~~~~~~~~~~ 83 (732)
..+....+.||+|+|+|+ ++++||+++.|||+||||.++|+|++||++||+||+++|++++++++|++||+++++++++
T Consensus 3 ~~~~~~~~~~p~~~~~~~-~~~~~g~~~~d~y~wl~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 81 (693)
T 3iuj_A 3 HMSGKARLHYPVTRQGEQ-VDHYFGQAVADPYRWLEDDRSPETEAWVKAQNAVTQDYLAQIPYRAAIKEKLAASWNYAKE 81 (693)
T ss_dssp -------CCCCCCCCCCC-EEEETTEEEECTTGGGGCTTSHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHSCCCEE
T ss_pred ccccccCCCCCCCCCCCe-EEEeCCccccCCchhhcCCCCHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHhhccccC
Confidence 344455678999999996 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEeCCEEEEEEEcCCCCeeEEEEEeCCCCCceEEeCCCCcCCCCCEEEEeEEECCCCcEEEEEEeccCCceEEEEEE
Q 004766 84 DAPFKRGNKYFYFHNTGLQPQSVLYVQDSLDAKAKVLLDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLM 163 (732)
Q Consensus 84 ~~p~~~g~~~~~~~~~~~~~~~~l~~r~~~~~~~~~l~D~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~ 163 (732)
++|.++|+++||++++++++|+.+||+. .++++++|||+|++++++.+.+++++|||||++|||+.+.+|+++++|+|+
T Consensus 82 ~~p~~~g~~~y~~~~~~~~~~~~~~r~~-~~~~~~vllD~n~la~~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~ 160 (693)
T 3iuj_A 82 GAPFREGRYHYFFKNDGLQNQNVLWRQQ-EGKPAEVFLDPNTLSPDGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLM 160 (693)
T ss_dssp CCCEEETTEEEEEEECSSCSSCEEEEEC-TTSCCEEEECGGGGSTTSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEE
T ss_pred CCCEEECCEEEEEEEcCCCceeEEEEeC-CCCCcEEEEehhhccCCCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEE
Confidence 9999999999999999999998899875 456779999999999888889999999999999999999999999999999
Q ss_pred ECCCCceecccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCCcccEEEEEECCCCCCCCeEEEecCC-CC
Q 004766 164 RIEDQIVEADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPE-HP 242 (732)
Q Consensus 164 dl~~g~~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~-~~ 242 (732)
|++||+.+++.+.++++++++|| ||+.|+|++.+... .+..++..++.+||+|++++++.++++|+++++ ++
T Consensus 161 dl~tg~~~~~~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~------~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~ 233 (693)
T 3iuj_A 161 DVESKQPLETPLKDVKFSGISWL-GNEGFFYSSYDKPD------GSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQH 233 (693)
T ss_dssp ETTTCSEEEEEEEEEESCCCEEE-TTTEEEEEESSCCC-------------CCCCEEEEEETTSCGGGCEEEESCSGGGC
T ss_pred ECCCCCCCccccCCceeccEEEe-CCCEEEEEEecCcc------cccccccCCCcEEEEEECCCCcccceEEEecCCCCC
Confidence 99999987776666655889999 99999999976521 123344578899999999999888999998876 56
Q ss_pred eeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCCCCcEEeeecccceEEEEEecCCeEEEEeCC
Q 004766 243 KYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNK 322 (732)
Q Consensus 243 ~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~ 322 (732)
.+..++.|||||++|++....... .+++|++|++++. .+++.++...+.....|+++|++|||++++
T Consensus 234 ~~~~~~~~SpDg~~l~~~~~~~~~-~~~i~~~d~~~~~------------~~~~~l~~~~~~~~~~~~~~g~~l~~~t~~ 300 (693)
T 3iuj_A 234 HRYVGATVTEDDRFLLISAANSTS-GNRLYVKDLSQEN------------APLLTVQGDLDADVSLVDNKGSTLYLLTNR 300 (693)
T ss_dssp CSEEEEEECTTSCEEEEEEESSSS-CCEEEEEETTSTT------------CCCEEEECSSSSCEEEEEEETTEEEEEECT
T ss_pred eEEEEEEEcCCCCEEEEEEccCCC-CcEEEEEECCCCC------------CceEEEeCCCCceEEEEeccCCEEEEEECC
Confidence 667789999999999998875542 4689999998742 125667666665666689999999999999
Q ss_pred CCCCceEEEEeCCCCC--CceEeccCCCCCceeEEEEecCCEEEEEEecCCeeEEEEEeCCCCceeeecccc-cceeeEe
Q 004766 323 DAPKYKIIRVDLKEPN--DWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIE-IGSVNAI 399 (732)
Q Consensus 323 ~~~~~~l~~~d~~~~~--~~~~l~~~~~~~~l~~~~~~~~~~l~~~~~~~g~~~l~~~d~~~g~~~~~l~~~-~g~v~~~ 399 (732)
++++++|+++|++++. .|+.++++.+ ..+ +++..+ ++|++...+++..+|++++++ |...+.|.++ .+.+..+
T Consensus 301 ~~~~~~l~~~d~~~~~~~~~~~l~~~~~-~~~-~~s~~g-~~lv~~~~~~g~~~l~~~d~~-g~~~~~l~~p~~~~~~~~ 376 (693)
T 3iuj_A 301 DAPNRRLVTVDAANPGPAHWRDLIPERQ-QVL-TVHSGS-GYLFAEYMVDATARVEQFDYE-GKRVREVALPGLGSVSGF 376 (693)
T ss_dssp TCTTCEEEEEETTSCCGGGCEEEECCCS-SCE-EEEEET-TEEEEEEEETTEEEEEEECTT-SCEEEEECCSSSSEEEEC
T ss_pred CCCCCEEEEEeCCCCCccccEEEecCCC-CEE-EEEEEC-CEEEEEEEECCeeEEEEEECC-CCeeEEeecCCCceEEee
Confidence 8889999999998875 3788998874 445 677665 899999999999999999998 5555788776 5677778
Q ss_pred ecccCCcEEEEEEecCCCCceEEEEECCCCCCceEEEEeecCCCCCCCCceEEEEEEEccCCCeeEEEEEEEcCCCCCCC
Q 004766 400 SARREDSVVFISFTSFLIPGIVYQCNLKTETPEMKIFRETIIPGFDRSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDG 479 (732)
Q Consensus 400 ~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~s~dG~~~i~~~~~~p~~~~~~~ 479 (732)
+.+++++.++++++++++|+++|.+|+.+++ .++++.+.. .+++..+.++++++++.|| ++||+++++|++...++
T Consensus 377 ~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~--~~~l~~~~~-~~~~~~~~~~~~~~~~~dg-~~i~~~l~~p~~~~~~~ 452 (693)
T 3iuj_A 377 NGKHDDPALYFGFENYAQPPTLYRFEPKSGA--ISLYRASAA-PFKPEDYVSEQRFYQSKDG-TRVPLIISYRKGLKLDG 452 (693)
T ss_dssp CCCTTCSCEEEEEECSSSCCEEEEECTTTCC--EEEEECCCS-SCCGGGEEEEEEEEECTTS-CEEEEEEEEESSCCCSS
T ss_pred ecCCCCCEEEEEecCCCCCCEEEEEECCCCe--EEEEEeCCC-CcChhhCeeEEEEEecCCC-cEEEEEEEecCCCCCCC
Confidence 8889999999999999999999999998885 777776544 4777888999999999999 99999999999876678
Q ss_pred CccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCccHHHHHHHHHHHHHHcCCCC
Q 004766 480 SHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQ 559 (732)
Q Consensus 480 ~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d 559 (732)
+.|+||++|||++.+..+.|+.....|++ +||+|+++|+||+|++|+.|+.++....+.+.++|+++++++|++++++|
T Consensus 453 ~~P~ll~~hGg~~~~~~~~~~~~~~~l~~-~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d 531 (693)
T 3iuj_A 453 SNPTILYGYGGFDVSLTPSFSVSVANWLD-LGGVYAVANLRGGGEYGQAWHLAGTQQNKQNVFDDFIAAAEYLKAEGYTR 531 (693)
T ss_dssp CCCEEEECCCCTTCCCCCCCCHHHHHHHH-TTCEEEEECCTTSSTTCHHHHHTTSGGGTHHHHHHHHHHHHHHHHTTSCC
T ss_pred CccEEEEECCCCCcCCCCccCHHHHHHHH-CCCEEEEEeCCCCCccCHHHHHhhhhhcCCCcHHHHHHHHHHHHHcCCCC
Confidence 99999999999999989999987767667 99999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCcccccccccCCCCCccccccCCCCCHHH-HHHHHhcCcccCCCCC
Q 004766 560 SRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHAWVSDFGCSEEEEE-FYWLIKYSPLHNVRRP 638 (732)
Q Consensus 560 ~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~~~~~~~g~p~~~~~-~~~~~~~sp~~~~~~~ 638 (732)
++||+|+|+|+||++++++++++|++|+|+|+.+|++|+.+++.++.+..|..+||+|.+++. +++|.++||++++++.
T Consensus 532 ~~ri~i~G~S~GG~la~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~sp~~~~~~~ 611 (693)
T 3iuj_A 532 TDRLAIRGGSNGGLLVGAVMTQRPDLMRVALPAVGVLDMLRYHTFTAGTGWAYDYGTSADSEAMFDYLKGYSPLHNVRPG 611 (693)
T ss_dssp GGGEEEEEETHHHHHHHHHHHHCTTSCSEEEEESCCCCTTTGGGSGGGGGCHHHHCCTTSCHHHHHHHHHHCHHHHCCTT
T ss_pred cceEEEEEECHHHHHHHHHHhhCccceeEEEecCCcchhhhhccCCCchhHHHHcCCccCHHHHHHHHHhcCHHHhhccc
Confidence 999999999999999999999999999999999999999998877777778889999988777 8899999999999872
Q ss_pred CCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeCCCCCCCCCchHHHHHHHHHH
Q 004766 639 WEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADR 718 (732)
Q Consensus 639 ~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~ 718 (732)
..+||+||+||.+|.+||++++.+++++|+++ ..+++++++++++++||++..+..+.++.++.+
T Consensus 612 --------~~~Pp~Li~~G~~D~~v~~~~~~~~~~~l~~~-------~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~ 676 (693)
T 3iuj_A 612 --------VSYPSTMVTTADHDDRVVPAHSFKFAATLQAD-------NAGPHPQLIRIETNAGHGAGTPVAKLIEQSADI 676 (693)
T ss_dssp --------CCCCEEEEEEESSCSSSCTHHHHHHHHHHHHH-------CCSSSCEEEEEEC-------CHHHHHHHHHHHH
T ss_pred --------CCCCceeEEecCCCCCCChhHHHHHHHHHHhh-------CCCCCCEEEEEeCCCCCCCcccHHHHHHHHHHH
Confidence 15677999999999999999999999999987 333689999999999999988756668999999
Q ss_pred HHHHHHHhCCC
Q 004766 719 YGFMAKMLGAS 729 (732)
Q Consensus 719 ~~fl~~~l~~~ 729 (732)
++||.++||..
T Consensus 677 ~~fl~~~l~~~ 687 (693)
T 3iuj_A 677 YAFTLYEMGYR 687 (693)
T ss_dssp HHHHHHHTTCS
T ss_pred HHHHHHHcCCC
Confidence 99999999875
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-97 Score=863.56 Aligned_cols=693 Identities=56% Similarity=1.044 Sum_probs=604.6
Q ss_pred CCCCcccccC-ceeeeecCccccCCCccccCCCCHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCCCcEEe
Q 004766 11 LQYPVARRDE-SVVDDYHGVKIVDPYRWLEDPDAEEVKDFVQKQVELTDSVLKNCDVRDKLREKITKLFDSPRYDAPFKR 89 (732)
Q Consensus 11 ~~~P~~~~~~-~~~~~~~g~~~~D~y~wLed~~~~~~~~~l~~qn~~t~~~l~~~~~~~~l~~~~~~~~~~~~~~~p~~~ 89 (732)
+.||+|+|+| + ++++||+++.|||+||||.++|++++||++||++++++|++++++++|+++++++++.++++.|.++
T Consensus 4 ~~~p~~~~~~~~-~~~~~g~~~~d~y~wl~~~~~~~~~~~~~~en~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~p~~d 82 (710)
T 2xdw_A 4 FQYPDVYRDETA-IQDYHGHKVCDPYAWLEDPDSEQTKAFVEAQNKITVPFLEQCPIRGLYKERMTELYDYPKYSCHFKK 82 (710)
T ss_dssp SCCCCCCCCTTC-EEEETTEEEECTTGGGGCTTSHHHHHHHHHHHHHHHHHHHHSTHHHHHHHHHHHHHCSCEECCCEEE
T ss_pred CCCCCCCCCCCe-eeeeCCcEEccCChhhcCCCCHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHhhccccCCCCEEE
Confidence 5799999999 7 8999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEEEcCCCCeeEEEEEeCCCCCceEEeCCCCcCCCCCEEEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCc
Q 004766 90 GNKYFYFHNTGLQPQSVLYVQDSLDAKAKVLLDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQI 169 (732)
Q Consensus 90 g~~~~~~~~~~~~~~~~l~~r~~~~~~~~~l~D~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~ 169 (732)
|+++||.++++++.+..||+++..++++++|+|+|++++++.+.+..++|||||++|||+.+.+|+++++|+++|+++|+
T Consensus 83 G~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~ 162 (710)
T 2xdw_A 83 GKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAK 162 (710)
T ss_dssp TTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTE
T ss_pred CCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCC
Confidence 99999999988888888999987677889999999999888788999999999999999999999999999999999999
Q ss_pred eecccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeE
Q 004766 170 VEADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGH 249 (732)
Q Consensus 170 ~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~ 249 (732)
.+..+..+..+.+++|||||+.|+|++.+..... .++..++..++.+||+|++++++.+++++++.++++.+..++.
T Consensus 163 ~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~---~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~ 239 (710)
T 2xdw_A 163 ELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGK---SDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAE 239 (710)
T ss_dssp EEEEEEEEECSCCEEECTTSSEEEEEECCCCSSC---CSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEE
T ss_pred CCcccccCcccceEEEEeCCCEEEEEEECCcccc---ccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEE
Confidence 7766555555578999999999999987653210 0133344567889999999998877888988776566777899
Q ss_pred EecCCcEEEEEEecCCcceEEEEEEeCCC------CCCCcccccccCCCCCcEEeeecccceEEEEEecCCeEEEEeCCC
Q 004766 250 VTEDGQYLVMCIEENCDPVNKVYYCDLSA------LPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKD 323 (732)
Q Consensus 250 ~SpDg~~l~~~~~~~~~~~~~l~~~d~~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~ 323 (732)
|||||++|++.+.+.....++||++|+++ +. ..++.+..........|+++|+.|+|.++.+
T Consensus 240 ~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~------------~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~ 307 (710)
T 2xdw_A 240 LSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGI------------LKWVKLIDNFEGEYDYVTNEGTVFTFKTNRH 307 (710)
T ss_dssp ECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSS------------CCCEEEECSSSSCEEEEEEETTEEEEEECTT
T ss_pred EcCCCCEEEEEEEccCCCccEEEEEECcccccccCCc------------cceEEeeCCCCcEEEEEeccCCEEEEEECCC
Confidence 99999999998875543357899999876 21 1255666655555557999999999999988
Q ss_pred CCCceEEEEeCCCCC--CceEeccCCCCCceeEEEEecCCEEEEEEecCCeeEEEEEeCCCCceeeecccccceeeEeec
Q 004766 324 APKYKIIRVDLKEPN--DWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISA 401 (732)
Q Consensus 324 ~~~~~l~~~d~~~~~--~~~~l~~~~~~~~l~~~~~~~~~~l~~~~~~~g~~~l~~~d~~~g~~~~~l~~~~g~v~~~~~ 401 (732)
+++++|+++|++++. .|+.|+++.+...+.++.+++++++++.+..++..+|+++++.+|+.++.|+++.+.+..+++
T Consensus 308 ~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~ 387 (710)
T 2xdw_A 308 SPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSG 387 (710)
T ss_dssp CTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEEC
T ss_pred CCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEec
Confidence 888999999998875 478999887556788899986589999999999999999999668766788888778888888
Q ss_pred ccCCcEEEEEEecCCCCceEEEEECCCCCCceEEEEeecCCCCCCCCceEEEEEEEccCCCeeEEEEEEEcCCCCCCCCc
Q 004766 402 RREDSVVFISFTSFLIPGIVYQCNLKTETPEMKIFRETIIPGFDRSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSH 481 (732)
Q Consensus 402 s~d~~~l~~~~ss~~~p~~~y~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~s~dG~~~i~~~~~~p~~~~~~~~~ 481 (732)
+++++.++++++|+++|+++|.+|+.+++.+.++++++.++.|++..+.++++++++.|| ++|++++++|++...+++.
T Consensus 388 s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~dg-~~i~~~~~~p~~~~~~~~~ 466 (710)
T 2xdw_A 388 QKKDTEIFYQFTSFLSPGIIYHCDLTKEELEPRVFREVTVKGIDASDYQTVQIFYPSKDG-TKIPMFIVHKKGIKLDGSH 466 (710)
T ss_dssp CTTCSEEEEEEECSSCCCEEEEEETTSSSCCCEEEEECCCTTCCGGGEEEEEEEEECTTS-CEEEEEEEEETTCCCSSCS
T ss_pred CCCCCEEEEEEeCCCCCCEEEEEECCCCccceEEeeecccCCcCccccEEEEEEEEcCCC-CEEEEEEEecCCCCCCCCc
Confidence 999999999999999999999999988841157777766666888889999999999999 9999999999987667899
Q ss_pred cEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCccHHHHHHHHHHHHHHcCCCCCC
Q 004766 482 PCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSR 561 (732)
Q Consensus 482 P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ 561 (732)
|+||++|||++.+..+.|+..+..+++++||+|+++|+||+|++|..|+..+...++.+.++|+++++++|++++++|++
T Consensus 467 P~vl~~hGg~~~~~~~~~~~~~~~l~~~~G~~v~~~d~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~~~~ 546 (710)
T 2xdw_A 467 PAFLYGYGGFNISITPNYSVSRLIFVRHMGGVLAVANIRGGGEYGETWHKGGILANKQNCFDDFQCAAEYLIKEGYTSPK 546 (710)
T ss_dssp CEEEECCCCTTCCCCCCCCHHHHHHHHHHCCEEEEECCTTSSTTHHHHHHTTSGGGTHHHHHHHHHHHHHHHHTTSCCGG
T ss_pred cEEEEEcCCCCCcCCCcccHHHHHHHHhCCcEEEEEccCCCCCCChHHHHhhhhhcCCchHHHHHHHHHHHHHcCCCCcc
Confidence 99999999999988888988766655548999999999999999999999999899999999999999999999999999
Q ss_pred cEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCcccccccccCCCCCccccccCCCCCHHHHHHHHhcCcccCCC-----
Q 004766 562 KLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVR----- 636 (732)
Q Consensus 562 ~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~sp~~~~~----- 636 (732)
||+|+|+|+||++++++++++|++|+|+|+.+|++|+..++..+.+..|..+||+|.+++.++.+.++||++++.
T Consensus 547 ~i~i~G~S~GG~la~~~a~~~p~~~~~~v~~~~~~d~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~~~~~~~~ 626 (710)
T 2xdw_A 547 RLTINGGSNGGLLVATCANQRPDLFGCVIAQVGVMDMLKFHKYTIGHAWTTDYGCSDSKQHFEWLIKYSPLHNVKLPEAD 626 (710)
T ss_dssp GEEEEEETHHHHHHHHHHHHCGGGCSEEEEESCCCCTTTGGGSTTGGGGHHHHCCTTSHHHHHHHHHHCGGGCCCCCSST
T ss_pred eEEEEEECHHHHHHHHHHHhCccceeEEEEcCCcccHhhccccCCChhHHHhCCCCCCHHHHHHHHHhCcHhhhcccccc
Confidence 999999999999999999999999999999999999999887776667888999998888899999999999998
Q ss_pred CCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeCCCCCCCCCchHHHHHHHH
Q 004766 637 RPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAA 716 (732)
Q Consensus 637 ~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~ 716 (732)
.. .+||+||+||.+|.+||++++.+++++|+++.+. .+++++++++++++++||++..+..+..+..+
T Consensus 627 ~~---------~~pP~Li~~G~~D~~v~~~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~ 694 (710)
T 2xdw_A 627 DI---------QYPSMLLLTADHDDRVVPLHSLKFIATLQYIVGR---SRKQNNPLLIHVDTKAGHGAGKPTAKVIEEVS 694 (710)
T ss_dssp TC---------CCCEEEEEEETTCCSSCTHHHHHHHHHHHHHTTT---STTCCSCEEEEEESSCCSSTTCCHHHHHHHHH
T ss_pred cC---------CCCcEEEEEeCCCCccChhHHHHHHHHHHhhhcc---ccCCCcCEEEEEeCCCCcCCCCCHHHHHHHHH
Confidence 52 4579999999999999999999999999975111 02347899999999999999887655678999
Q ss_pred HHHHHHHHHhCCCcCC
Q 004766 717 DRYGFMAKMLGASWVE 732 (732)
Q Consensus 717 ~~~~fl~~~l~~~~~~ 732 (732)
.+++||.++|+..|.+
T Consensus 695 ~~~~fl~~~l~~~~~~ 710 (710)
T 2xdw_A 695 DMFAFIARCLNIDWIP 710 (710)
T ss_dssp HHHHHHHHHHTCCCCC
T ss_pred HHHHHHHHHcCCccCC
Confidence 9999999999988753
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-96 Score=852.43 Aligned_cols=674 Identities=36% Similarity=0.667 Sum_probs=590.1
Q ss_pred CCCcccccCceeeeecCccccCCCccccCCCCHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCCCcEEeCC
Q 004766 12 QYPVARRDESVVDDYHGVKIVDPYRWLEDPDAEEVKDFVQKQVELTDSVLKNCDVRDKLREKITKLFDSPRYDAPFKRGN 91 (732)
Q Consensus 12 ~~P~~~~~~~~~~~~~g~~~~D~y~wLed~~~~~~~~~l~~qn~~t~~~l~~~~~~~~l~~~~~~~~~~~~~~~p~~~g~ 91 (732)
.||+|+|+|+ ++++||+++.|||+||||.++|+|++||++||+||+++|++++++++|+++|+++++.++++.|.++|+
T Consensus 2 ~~p~~~~~~~-~~~~~g~~~~d~y~wl~~~~~~~~~~~~~~en~~t~~~l~~~~~~~~l~~~~~~~~~~~~~~~p~~dG~ 80 (695)
T 2bkl_A 2 SYPATRAEQV-VDTLHGVQVADPYRWLEDEKAPEVQTWMTAQNAHAREALAKFPGREALAARFKELFYTDSVSTPSRRNG 80 (695)
T ss_dssp CCSCCCCCCC-EEEETTEEEECTTGGGGCTTSHHHHHHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHSCCEECCCEEETT
T ss_pred CCCCCCCCCe-eeeeCCcEEecCChHhcCCCCHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHhhccccCCCCEEECC
Confidence 6899999996 899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEcCCCCeeEEEEEeCCCCCceEEeCCCCcCCCCCEEEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCcee
Q 004766 92 KYFYFHNTGLQPQSVLYVQDSLDAKAKVLLDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVE 171 (732)
Q Consensus 92 ~~~~~~~~~~~~~~~l~~r~~~~~~~~~l~D~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~ 171 (732)
++||.++++++++..||+++..++++++|+|+|++++++.+.+..++|||||++|||+.+.+|++..+|+++|+++|+.+
T Consensus 81 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~ 160 (695)
T 2bkl_A 81 RFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWS 160 (695)
T ss_dssp EEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBC
T ss_pred EEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCc
Confidence 99999998888888999998777788999999999988888999999999999999999999999999999999999977
Q ss_pred -cccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEE
Q 004766 172 -ADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHV 250 (732)
Q Consensus 172 -~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~ 250 (732)
...+.++.+.+++|||||+.|+|++.+... .+..++..++.+||+|++++++.+++++++.++++.+..++.|
T Consensus 161 ~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~------~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~ 234 (695)
T 2bkl_A 161 KVDVIEGGKYATPKWTPDSKGFYYEWLPTDP------SIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDL 234 (695)
T ss_dssp SSCCBSCCTTCCCEECTTSSEEEEEECCCCT------TSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEE
T ss_pred CCcccCcccccceEEecCCCEEEEEEecCCC------CCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEE
Confidence 545555444789999999999999876521 1233445678899999999998778899987766667779999
Q ss_pred ecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCCCCcEEeeecccceEEEEEecCCeEEEEeCCCCCCceEE
Q 004766 251 TEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKII 330 (732)
Q Consensus 251 SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~ 330 (732)
||||++|++.+.+.. ..++||+++..+++ ++.+..........+.++|+ ||+.++.++++++|+
T Consensus 235 SpDG~~l~~~~~~~~-~~~~l~~~~~~~~~--------------~~~l~~~~~~~~~~~~~~g~-l~~~s~~~~~~~~l~ 298 (695)
T 2bkl_A 235 SRDGKYLFVYILRGW-SENDVYWKRPGEKD--------------FRLLVKGVGAKYEVHAWKDR-FYVLTDEGAPRQRVF 298 (695)
T ss_dssp CTTSCCEEEEEEETT-TEEEEEEECTTCSS--------------CEEEEECSSCCEEEEEETTE-EEEEECTTCTTCEEE
T ss_pred CCCCCEEEEEEeCCC-CceEEEEEcCCCCc--------------eEEeecCCCceEEEEecCCc-EEEEECCCCCCCEEE
Confidence 999999999887652 36889999765432 45666555444444558888 999999887889999
Q ss_pred EEeCCCCC--CceEeccCCCCCceeEEEEecCCEEEEEEecCCeeEEEEEeCCCCceeeecccc-cceeeEeecccCCcE
Q 004766 331 RVDLKEPN--DWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIE-IGSVNAISARREDSV 407 (732)
Q Consensus 331 ~~d~~~~~--~~~~l~~~~~~~~l~~~~~~~~~~l~~~~~~~g~~~l~~~d~~~g~~~~~l~~~-~g~v~~~~~s~d~~~ 407 (732)
++|++++. .|+.++++.++..+.++.+++ +.+++....++..+|++++++ |+..+.|.++ .+.+..++++++++.
T Consensus 299 ~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~~-~~lv~~~~~dg~~~l~~~~~~-g~~~~~l~~~~~~~v~~~~~s~d~~~ 376 (695)
T 2bkl_A 299 EVDPAKPARASWKEIVPEDSSASLLSVSIVG-GHLSLEYLKDATSEVRVATLK-GKPVRTVQLPGVGAASNLMGLEDLDD 376 (695)
T ss_dssp EEBTTBCSGGGCEEEECCCSSCEEEEEEEET-TEEEEEEEETTEEEEEEEETT-CCEEEECCCSSSSEECCCBSCTTCSE
T ss_pred EEeCCCCCccCCeEEecCCCCCeEEEEEEEC-CEEEEEEEECCEEEEEEEeCC-CCeeEEecCCCCeEEEEeecCCCCCE
Confidence 99998775 378898876567788899885 899999999999999999986 6655778777 677777888899999
Q ss_pred EEEEEecCCCCceEEEEECCCCCCceEEEEeecCCCCCCCCceEEEEEEEccCCCeeEEEEEEEcCCCCCCCCccEEEEE
Q 004766 408 VFISFTSFLIPGIVYQCNLKTETPEMKIFRETIIPGFDRSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYG 487 (732)
Q Consensus 408 l~~~~ss~~~p~~~y~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~ 487 (732)
++++++|+++|+++|.+|+.+++ .+++++.... |++..+.++++++++.|| ++|++++++|+++..+++.|+||++
T Consensus 377 l~~~~ss~~~P~~v~~~d~~~g~--~~~l~~~~~~-~~~~~~~~~~~~~~~~dg-~~i~~~~~~p~~~~~~~~~p~vl~~ 452 (695)
T 2bkl_A 377 AYYVFTSFTTPRQIYKTSVSTGK--SELWAKVDVP-MNPEQYQVEQVFYASKDG-TKVPMFVVHRKDLKRDGNAPTLLYG 452 (695)
T ss_dssp EEEEEEETTEEEEEEEEETTTCC--EEEEEECCCS-SCGGGEEEEEEEEECTTS-CEEEEEEEEETTCCCSSCCCEEEEC
T ss_pred EEEEEcCCCCCCEEEEEECCCCc--EEEEecCCCC-CCHHHCeEEEEEEECCCC-CEEEEEEEECCCCCCCCCccEEEEE
Confidence 99999999999999999999885 6777765543 777788999999999999 9999999999987667899999999
Q ss_pred cCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCccHHHHHHHHHHHHHHcCCCCCCcEEEEe
Q 004766 488 YGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEG 567 (732)
Q Consensus 488 hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G 567 (732)
|||++.+..+.|+.....|++ +||+|+++|+||+|++|..|+..+....+.+.++|+++++++|++++++|++||+|+|
T Consensus 453 hGg~~~~~~~~~~~~~~~l~~-~G~~v~~~d~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~~~~~i~i~G 531 (695)
T 2bkl_A 453 YGGFNVNMEANFRSSILPWLD-AGGVYAVANLRGGGEYGKAWHDAGRLDKKQNVFDDFHAAAEYLVQQKYTQPKRLAIYG 531 (695)
T ss_dssp CCCTTCCCCCCCCGGGHHHHH-TTCEEEEECCTTSSTTCHHHHHTTSGGGTHHHHHHHHHHHHHHHHTTSCCGGGEEEEE
T ss_pred CCCCccccCCCcCHHHHHHHh-CCCEEEEEecCCCCCcCHHHHHhhHhhcCCCcHHHHHHHHHHHHHcCCCCcccEEEEE
Confidence 999999888889887766666 9999999999999999999999999889999999999999999999999999999999
Q ss_pred cChhHHHHHHHHhhCCCeeeEEEEcCCcccccccccCCCCCccccccCCCCCHHHHHHHHhcCcccCCCCCCCCCCCCCC
Q 004766 568 GSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPF 647 (732)
Q Consensus 568 ~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~ 647 (732)
+|+||++++++++++|++|+|+|+.+|++|+..+..+..+..|..+||+|.+++.++.+.++||+++++.. +
T Consensus 532 ~S~GG~la~~~~~~~p~~~~~~v~~~~~~d~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~~~~~--------~ 603 (695)
T 2bkl_A 532 GSNGGLLVGAAMTQRPELYGAVVCAVPLLDMVRYHLFGSGRTWIPEYGTAEKPEDFKTLHAYSPYHHVRPD--------V 603 (695)
T ss_dssp ETHHHHHHHHHHHHCGGGCSEEEEESCCCCTTTGGGSTTGGGGHHHHCCTTSHHHHHHHHHHCGGGCCCSS--------C
T ss_pred ECHHHHHHHHHHHhCCcceEEEEEcCCccchhhccccCCCcchHHHhCCCCCHHHHHHHHhcChHhhhhhc--------C
Confidence 99999999999999999999999999999999887766666778899999889999999999999999874 3
Q ss_pred CCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeCCCCCCCCCchHHHHHHHHHHHHHHHHHhC
Q 004766 648 QYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLG 727 (732)
Q Consensus 648 ~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 727 (732)
.+||+||+||.+|.+||++++.+++++|+++ ...++++++++++++||++..+..+..+..+.+++||.++|+
T Consensus 604 ~~~P~Li~~G~~D~~v~~~~~~~~~~~l~~~-------~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 676 (695)
T 2bkl_A 604 RYPALLMMAADHDDRVDPMHARKFVAAVQNS-------PGNPATALLRIEANAGHGGADQVAKAIESSVDLYSFLFQVLD 676 (695)
T ss_dssp CCCEEEEEEETTCSSSCTHHHHHHHHHHHTS-------TTCCSCEEEEEETTCBTTBCSCHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCEEEEeeCCCCCCChHHHHHHHHHHHhh-------ccCCCCEEEEEeCCCCcCCCCCHHHHHHHHHHHHHHHHHHcC
Confidence 5699999999999999999999999999973 112789999999999999977665567888999999999998
Q ss_pred CCc
Q 004766 728 ASW 730 (732)
Q Consensus 728 ~~~ 730 (732)
..+
T Consensus 677 ~~~ 679 (695)
T 2bkl_A 677 VQG 679 (695)
T ss_dssp C--
T ss_pred CCC
Confidence 764
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-93 Score=838.18 Aligned_cols=678 Identities=42% Similarity=0.694 Sum_probs=575.5
Q ss_pred CCCCCcccccCceeeeecCccccCCCccccCC--CCHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCCCcE
Q 004766 10 SLQYPVARRDESVVDDYHGVKIVDPYRWLEDP--DAEEVKDFVQKQVELTDSVLKNCDVRDKLREKITKLFDSPRYDAPF 87 (732)
Q Consensus 10 ~~~~P~~~~~~~~~~~~~g~~~~D~y~wLed~--~~~~~~~~l~~qn~~t~~~l~~~~~~~~l~~~~~~~~~~~~~~~p~ 87 (732)
...||+|+|+|+ ++++||+++.|||+||||. ++|++++||++||+|++++|++++++++|++++++++..++++.|.
T Consensus 37 ~~~~p~~~~~~~-~~~~~g~~~~d~y~wl~~~~~~~~~~~~~~~aen~~t~~~l~~~~~~~~l~~~~~~~~~~~~~~~p~ 115 (741)
T 1yr2_A 37 LPPYPASPQVPL-VEDHFGEKVSDPWRWLEADVRTDAKVAAWVQAQSAYTAAYLKQLPERAALEKRMKALIDYERFGLPQ 115 (741)
T ss_dssp -CCCCCCCCCCC-EEEETTEEEECTTGGGGSCTTTCHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHSCCCEECCCE
T ss_pred cCCCCCCCCCCe-eeeeCCcEEccCcHHHhCCCCCCHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHhhcccccCCCE
Confidence 356899999996 8999999999999999998 8999999999999999999999999999999999999999999999
Q ss_pred EeCCEEEEEEEcCCCCeeEEEEEeCC---CCCceEEeCCCCcCCCCCEEEEeEEECCCCcEEEEEEeccCCceEEEEEEE
Q 004766 88 KRGNKYFYFHNTGLQPQSVLYVQDSL---DAKAKVLLDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMR 164 (732)
Q Consensus 88 ~~g~~~~~~~~~~~~~~~~l~~r~~~---~~~~~~l~D~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~d 164 (732)
++|+++||.++++++++..||+++.. ++++++|+|+|++++++.+.+.+++|||||++|||+.+.+|+++.+|+++|
T Consensus 116 pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~d 195 (741)
T 1yr2_A 116 RRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVG 195 (741)
T ss_dssp EETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEE
T ss_pred EECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEE
Confidence 99999999999888888999999876 677899999999998877889999999999999999999999999999999
Q ss_pred CCCCceecccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCCcccEEEEEECCCCCCCCeEEEecCCCCee
Q 004766 165 IEDQIVEADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKY 244 (732)
Q Consensus 165 l~~g~~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~ 244 (732)
+++|+.++....+..+.+++|||| +.|+|++.+.... .+..++..++.+||+|++++++.+++++++.++++.+
T Consensus 196 l~tg~~~~~~~~~~~~~~~~wspD-~~l~~~~~~~~~~-----~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~ 269 (741)
T 1yr2_A 196 VADGKPLADELKWVKFSGLAWLGN-DALLYSRFAEPKE-----GQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKR 269 (741)
T ss_dssp TTTCCEEEEEEEEEESCCCEESTT-SEEEEEECCCC-------------CCCCCEEEEEETTSCGGGCEEEECCTTCTTC
T ss_pred CCCCCCCCccCCCceeccEEEECC-CEEEEEEecCccc-----ccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeE
Confidence 999998776555554578999999 9999998665210 1122334567899999999998878899988766556
Q ss_pred EEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCCCCcEEeeecccceEEEEEecCCeEEEEeCCCC
Q 004766 245 IFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDA 324 (732)
Q Consensus 245 ~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~ 324 (732)
..++.|||||++|++.+.+..+..++||++|++++. ..+++.+....+.....++|+|+.|+|.++.++
T Consensus 270 ~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~-----------~~~~~~l~~~~~~~~~~~~~dg~~l~~~s~~~~ 338 (741)
T 1yr2_A 270 GHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGK-----------IGPVTALIPDLKAQWDFVDGVGDQLWFVSGDGA 338 (741)
T ss_dssp EEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTE-----------ECCCEEEECSSSSCEEEEEEETTEEEEEECTTC
T ss_pred EEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCC-----------CcccEEecCCCCceEEEEeccCCEEEEEECCCC
Confidence 779999999999999987664346789999987631 011455655554445557799999999999888
Q ss_pred CCceEEEEeCCCC-CCceEeccCCCCCceeEEEEecCCEEEEEEecCCeeEEEEEeCCCCceeeecccc-cceeeEeecc
Q 004766 325 PKYKIIRVDLKEP-NDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIE-IGSVNAISAR 402 (732)
Q Consensus 325 ~~~~l~~~d~~~~-~~~~~l~~~~~~~~l~~~~~~~~~~l~~~~~~~g~~~l~~~d~~~g~~~~~l~~~-~g~v~~~~~s 402 (732)
++++|+++|++++ ..|+.++++.. ..+.++.+++ +.+++....++..+|++++++ |+..+.|+++ .+.+..++++
T Consensus 339 ~~~~l~~~d~~~~~~~~~~l~~~~~-~~l~~~~~~~-~~lv~~~~~dg~~~l~~~~~~-g~~~~~l~~~~~~~v~~~~~s 415 (741)
T 1yr2_A 339 PLKKIVRVDLSGSTPRFDTVVPESK-DNLESVGIAG-NRLFASYIHDAKSQVLAFDLD-GKPAGAVSLPGIGSASGLSGR 415 (741)
T ss_dssp TTCEEEEEECSSSSCEEEEEECCCS-SEEEEEEEEB-TEEEEEEEETTEEEEEEEETT-SCEEEECBCSSSCEEEEEECC
T ss_pred CCCEEEEEeCCCCccccEEEecCCC-CeEEEEEEEC-CEEEEEEEECCEEEEEEEeCC-CCceeeccCCCCeEEEEeecC
Confidence 8999999999885 35888888763 5678888886 899999999999999999986 6555778876 6778888889
Q ss_pred cCCcEEEEEEecCCCCceEEEEECCCCCCceEEEEeecCCCCCCCCceEEEEEEEccCCCeeEEEEEEEcCCCCCCCCcc
Q 004766 403 REDSVVFISFTSFLIPGIVYQCNLKTETPEMKIFRETIIPGFDRSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHP 482 (732)
Q Consensus 403 ~d~~~l~~~~ss~~~p~~~y~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~s~dG~~~i~~~~~~p~~~~~~~~~P 482 (732)
++++.++++++|+++|+++|.+|+.+++ .++++++ ...|++..+..+++++++.|| ++|++++++|++. +++.|
T Consensus 416 ~d~~~l~~~~ss~~~P~~i~~~d~~tg~--~~~l~~~-~~~~~~~~~~~~~~~~~~~dg-~~i~~~~~~p~~~--~~~~p 489 (741)
T 1yr2_A 416 PGDRHAYLSFSSFTQPATVLALDPATAK--TTPWEPV-HLTFDPADFRVEQVFYPSKDG-TKVPMFIVRRKDA--KGPLP 489 (741)
T ss_dssp BTCSCEEEEEEETTEEEEEEEEETTTTE--EEECSCC-CCSSCGGGEEEEEEEEECTTS-CEEEEEEEEETTC--CSCCC
T ss_pred CCCCEEEEEEcCCCCCCEEEEEECCCCc--EEEEecC-CCCCChhHCEEEEEEEEcCCC-CEEEEEEEecCCC--CCCCc
Confidence 9999999999999999999999999884 6677663 335788888999999999999 9999999999875 57899
Q ss_pred EEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCccHHHHHHHHHHHHHHcCCCCCCc
Q 004766 483 CLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSRK 562 (732)
Q Consensus 483 ~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~ 562 (732)
+||++|||++.+..+.|+.....|++ +||+|+++|+||+|++|+.|+..+...++.+.++|+++++++|++++++|++|
T Consensus 490 ~vl~~hGg~~~~~~~~~~~~~~~l~~-~G~~v~~~d~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~~~~r 568 (741)
T 1yr2_A 490 TLLYGYGGFNVALTPWFSAGFMTWID-SGGAFALANLRGGGEYGDAWHDAGRRDKKQNVFDDFIAAGEWLIANGVTPRHG 568 (741)
T ss_dssp EEEECCCCTTCCCCCCCCHHHHHHHT-TTCEEEEECCTTSSTTHHHHHHTTSGGGTHHHHHHHHHHHHHHHHTTSSCTTC
T ss_pred EEEEECCCCCccCCCCcCHHHHHHHH-CCcEEEEEecCCCCCCCHHHHHhhhhhcCCCcHHHHHHHHHHHHHcCCCChHH
Confidence 99999999999888889887766555 99999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecChhHHHHHHHHhhCCCeeeEEEEcCCcccccccccCCCCCccccccCCCCCHHHHHHHHhcCcccCCCCCCCCC
Q 004766 563 LCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQN 642 (732)
Q Consensus 563 i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~sp~~~~~~~~~~~ 642 (732)
|+|+|+|+||++++++++++|++|+|+|+.+|++|+..+..+..+..|..+||+|.+++.++.+.++||+++++..
T Consensus 569 i~i~G~S~GG~la~~~~~~~p~~~~~~v~~~~~~d~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~~~~~---- 644 (741)
T 1yr2_A 569 LAIEGGSNGGLLIGAVTNQRPDLFAAASPAVGVMDMLRFDQFTAGRYWVDDYGYPEKEADWRVLRRYSPYHNVRSG---- 644 (741)
T ss_dssp EEEEEETHHHHHHHHHHHHCGGGCSEEEEESCCCCTTSGGGSTTGGGGHHHHCCTTSHHHHHHHHTTCGGGCCCTT----
T ss_pred EEEEEECHHHHHHHHHHHhCchhheEEEecCCccccccccCCCCCchhHHHcCCCCCHHHHHHHHHcCchhhhhcc----
Confidence 9999999999999999999999999999999999999887766666677899999888899999999999999862
Q ss_pred CCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeCCCCCCCCCchHHHHHHHHHHHHHH
Q 004766 643 PDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFM 722 (732)
Q Consensus 643 ~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl 722 (732)
..+||+||+||.+|.+||++++.+++++|++. ++.|+++++++++++||++..+..+..+..+.+++||
T Consensus 645 ----~~~~P~Li~~G~~D~~v~~~~~~~~~~~l~~~-------~~~g~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl 713 (741)
T 1yr2_A 645 ----VDYPAILVTTADTDDRVVPGHSFKYTAALQTA-------AIGPKPHLIRIETRAGHGSGKPIDKQIEETADVQAFL 713 (741)
T ss_dssp ----SCCCEEEEEECSCCSSSCTHHHHHHHHHHHHS-------CCCSSCEEEEEC---------CHHHHHHHHHHHHHHH
T ss_pred ----CCCCCEEEEeeCCCCCCChhHHHHHHHHHhhh-------hcCCCCEEEEEeCCCCcCCCCCHHHHHHHHHHHHHHH
Confidence 13489999999999999999999999999983 2238999999999999998876665678899999999
Q ss_pred HHHhCCCc
Q 004766 723 AKMLGASW 730 (732)
Q Consensus 723 ~~~l~~~~ 730 (732)
.++|+..+
T Consensus 714 ~~~l~~~~ 721 (741)
T 1yr2_A 714 AHFTGLTP 721 (741)
T ss_dssp HHHHTCCC
T ss_pred HHHcCCCc
Confidence 99998764
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-93 Score=831.95 Aligned_cols=675 Identities=25% Similarity=0.397 Sum_probs=565.1
Q ss_pred CCCCCCCCCCCCCCcccccCceeeeecC---------------ccccCCCccccCCC--CHHHHHHHHHHHHHHHHHHcC
Q 004766 1 MASLSGIDESLQYPVARRDESVVDDYHG---------------VKIVDPYRWLEDPD--AEEVKDFVQKQVELTDSVLKN 63 (732)
Q Consensus 1 ~~~~~~~~~~~~~P~~~~~~~~~~~~~g---------------~~~~D~y~wLed~~--~~~~~~~l~~qn~~t~~~l~~ 63 (732)
|+|..-....+.||+|+|+|+ +++ || +++.|||+||||.+ ||||++||++||+||+++|++
T Consensus 21 ~~~~~~~~~~~~~p~~~~~~~-~~~-~g~~~~~~~~~~~~~~~~~~~d~y~wl~d~~~~~~~~~~~~~~~n~~~~~~~~~ 98 (751)
T 2xe4_A 21 MSSDSSVAASAQPPIAAKKPH-RVT-LGYVEGEDRGPNPMNPPRYREDPYFWMRDDDRKDPAVIEHLNKEKVYFQARSAD 98 (751)
T ss_dssp ---------CCCCCCCCCCCC-EEE-ESCCTTSCCCSSCCSSCEEEECTTGGGCCTTSCCHHHHHHHHHHHHHHHHHHGG
T ss_pred ccccccCCCCCCCCCCCCCCe-eec-CCCcccccccccccCCCeEEeeCCccccCCCCCCHHHHHHHHHHHHHHHHHHhh
Confidence 444443333367999999996 789 99 99999999999998 999999999999999999999
Q ss_pred C-hhHHHHHHHHHhhcCCCCCCCcEEeCCEEEEEEEcCCCCeeEEEEEeC---CCC--CceEEeCCCCcCCCCC-EEEEe
Q 004766 64 C-DVRDKLREKITKLFDSPRYDAPFKRGNKYFYFHNTGLQPQSVLYVQDS---LDA--KAKVLLDPNTLSDDGT-AALIK 136 (732)
Q Consensus 64 ~-~~~~~l~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~l~~r~~---~~~--~~~~l~D~~~l~~~~~-~~~~~ 136 (732)
+ +++++|++||+++++++++++|.++|+++||.++.+++++.++|+++. .++ ++++|+|+|++++++. +.++.
T Consensus 99 ~~~~~~~l~~e~~~~~~~~~~~~p~~~g~~~yy~~~~~g~~~~vl~r~~~~~~~~~~~~~~vlld~n~~a~~~~~~~~~~ 178 (751)
T 2xe4_A 99 IAQLRDDIYAEHISHINEDDMSAPYVYGKYRYYTREVKGKPYKIYCRVFTDKEPGDVAAEEVIIDVNQVAEGKAFCDVME 178 (751)
T ss_dssp GHHHHHHHHHHHHHTSCSSEECCCEEETTEEEEEEECTTCCSCEEEEEETTSCTTCTTTCEEEEEHHHHTTTCSCCEEEE
T ss_pred hhHHHHHHHHHHHHhcccccCCCCeEECCEEEEEEECCCCceeEEEEEcCCCCCCCCcCCEEEechhHhccCCCeEEEee
Confidence 9 999999999999999999999999999999999988888888888875 444 6799999999988754 58999
Q ss_pred EEEC-CCCcEEEEEEeccCCceEEEEEEECCCC-ceecccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccC
Q 004766 137 VSVS-EDAKYLAYALSYSGSDWATIKLMRIEDQ-IVEADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDS 214 (732)
Q Consensus 137 ~~~S-PDG~~la~~~~~~G~e~~~i~v~dl~~g-~~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~ 214 (732)
++|| |||++|||+.+.+|+++++||++|+++| +.+++.+.+. .++++|||||++|+|++.+. .
T Consensus 179 ~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~~-~~~~~WspDg~~l~y~~~d~--------------~ 243 (751)
T 2xe4_A 179 VKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSGT-NGEIVWGPDHTSLFYVTKDE--------------T 243 (751)
T ss_dssp EEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEEE-CSCCEECSSTTEEEEEEECT--------------T
T ss_pred eEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccCc-eeeEEEecCCCEEEEEEECC--------------C
Confidence 9999 9999999999999999999999999999 8665555444 47899999999999998654 2
Q ss_pred CcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCCCC
Q 004766 215 NLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLP 294 (732)
Q Consensus 215 ~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~ 294 (732)
.++.+||++++++++.++++++++++. .+..++.|||||++|++.+.... .++||++|++++. ..
T Consensus 244 ~~~~~v~~~~lgt~~~~~~lv~~~~~~-~~~~~~~~SpDg~~l~~~~~~~~--~~~l~~~d~~~~~------------~~ 308 (751)
T 2xe4_A 244 LRENKVWRHVMGKLQSEDVCLYEEHNP-LFSAFMYKAADTNTLCIGSQSPE--TAEVHLLDLRKGN------------AH 308 (751)
T ss_dssp CCEEEEEEEETTSCGGGCEEEEECCCT-TCEEEEEECTTSSEEEEEEECSS--CEEEEEEESSSCT------------TC
T ss_pred CCCCEEEEEECCCCchhcEEEEecCCC-ceEEEEEECCCCCEEEEEecCCC--CceEEEEECCCCC------------CC
Confidence 456789999999988778889987654 46678999999999999987654 6899999998742 11
Q ss_pred c--EEeeecccceEEEEEe---cCCeEEEEeCCC-CCCceEEEEeCCCCCCceE-eccCCCCCceeEEEEecCCEEEEEE
Q 004766 295 F--VKLIDGFDAQYEVIAN---DDTVFTFLTNKD-APKYKIIRVDLKEPNDWFE-VIPEAERDVLESATAVNLNQMIVSY 367 (732)
Q Consensus 295 ~--~~l~~~~~~~~~~~s~---dg~~l~~~s~~~-~~~~~l~~~d~~~~~~~~~-l~~~~~~~~l~~~~~~~~~~l~~~~ 367 (732)
. +.++...... .|++ +|+.|||+++++ +.+++|+++|++++..|+. ++++..+..+.++.+.+ +.|++..
T Consensus 309 ~~~~~l~~~~~~~--~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~~-~~lv~~~ 385 (751)
T 2xe4_A 309 NTLEIVRPREKGV--RYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVRS-NYLVVAG 385 (751)
T ss_dssp CCEEESSCCCTTC--CEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEECS-SEEEEEE
T ss_pred ceeEEeecCCCCc--eEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEEC-CEEEEEE
Confidence 3 3444322211 1334 499999999987 7789999999986434777 88877666778888876 8999999
Q ss_pred ecCCeeEEEEEeC-------CCCceeeeccccc-ceeeEeec----ccCCcEEEEEEecCCCCceEEEEECCCCCCceEE
Q 004766 368 LSDVKYVLQIRDL-------KNGSLLHQLPIEI-GSVNAISA----RREDSVVFISFTSFLIPGIVYQCNLKTETPEMKI 435 (732)
Q Consensus 368 ~~~g~~~l~~~d~-------~~g~~~~~l~~~~-g~v~~~~~----s~d~~~l~~~~ss~~~p~~~y~~d~~~~~~~~~~ 435 (732)
..++..+|+++++ ++|+..+.|+++. +.+..++. +++++.++++++|+++|+++|.+|+.+++ .++
T Consensus 386 ~~~g~~~l~~~dl~~~~~~~~~g~~~~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~--~~~ 463 (751)
T 2xe4_A 386 RRAGLTRIWTMMADSQDGVFKAGTGLREVVMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHS--RTA 463 (751)
T ss_dssp EETTEEEEEEEECCTTTSCCCTTTCCEECCCCCSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCC--EEE
T ss_pred EeCCEEEEEEEecccccccccCCccceEECCCCceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCc--EEE
Confidence 9999999999996 5455136777763 33335543 46888999999999999999999999885 777
Q ss_pred EEeecCC-CCCCCCceEEEEEEEccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEE
Q 004766 436 FRETIIP-GFDRSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVF 514 (732)
Q Consensus 436 l~~~~~~-~~~~~~~~~~~~~~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v 514 (732)
+++...+ .+++..+.++++++++.|| ++|++++++|++.+.+++.|+||++|||++....+.|+.....|++ +||+|
T Consensus 464 l~~~~~~~~~~~~~~~~~~~~~~s~dG-~~i~~~l~~p~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~-~G~~v 541 (751)
T 2xe4_A 464 VKVREVGGGFDAANYKVERRFATAPDQ-TKIPLSVVYHKDLDMSQPQPCMLYGYGSYGLSMDPQFSIQHLPYCD-RGMIF 541 (751)
T ss_dssp EEECCCCTTCCGGGEEEEEEEEECTTC-CEEEEEEEEETTSCTTSCCCEEEECCCCTTCCCCCCCCGGGHHHHT-TTCEE
T ss_pred EeccccccCCCccceEEEEEEEECCCC-cEEEEEEEcCCCCCCCCCccEEEEECCCCCcCCCCcchHHHHHHHh-CCcEE
Confidence 8766554 5777788899999999999 9999999999987667889999999999998888889877665555 99999
Q ss_pred EEEcccCCCCCchhHHh-cccccCCccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcC
Q 004766 515 CIANIRGGGEYGEEWHK-GGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHV 593 (732)
Q Consensus 515 ~~~~~rG~g~~g~~~~~-~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~ 593 (732)
+++|+||+|++|+.|+. .+...++.+.++|+++++++|++++++|++||+|+|+|+||++++++++++|++|+|+|+.+
T Consensus 542 ~~~d~RG~g~~G~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~la~~~a~~~p~~~~a~v~~~ 621 (751)
T 2xe4_A 542 AIAHIRGGSELGRAWYEIGAKYLTKRNTFSDFIAAAEFLVNAKLTTPSQLACEGRSAGGLLMGAVLNMRPDLFKVALAGV 621 (751)
T ss_dssp EEECCTTSCTTCTHHHHTTSSGGGTHHHHHHHHHHHHHHHHTTSCCGGGEEEEEETHHHHHHHHHHHHCGGGCSEEEEES
T ss_pred EEEeeCCCCCcCcchhhccccccccCccHHHHHHHHHHHHHCCCCCcccEEEEEECHHHHHHHHHHHhCchheeEEEEeC
Confidence 99999999999999999 99888899999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccccccCCCC----CccccccCCCCCHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHH
Q 004766 594 GVMDMLRYHKFTIG----HAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSL 669 (732)
Q Consensus 594 p~~d~~~~~~~~~~----~~~~~~~g~p~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~ 669 (732)
|++|+..++..... ..| .+||+|.+++.++.+.++||++++++. .+||+||+||.+|.+||++++.
T Consensus 622 ~~~d~~~~~~~~~~~~~~~~~-~~~g~p~~~~~~~~~~~~sp~~~~~~~---------~~Pp~Lii~G~~D~~vp~~~~~ 691 (751)
T 2xe4_A 622 PFVDVMTTMCDPSIPLTTGEW-EEWGNPNEYKYYDYMLSYSPMDNVRAQ---------EYPNIMVQCGLHDPRVAYWEPA 691 (751)
T ss_dssp CCCCHHHHHTCTTSTTHHHHT-TTTCCTTSHHHHHHHHHHCTGGGCCSS---------CCCEEEEEEETTCSSSCTHHHH
T ss_pred CcchHHhhhcccCcccchhhH-HHcCCCCCHHHHHHHHhcChhhhhccC---------CCCceeEEeeCCCCCCCHHHHH
Confidence 99999876421111 123 678999888888899999999999872 4567999999999999999999
Q ss_pred HHHHHHHHhhcCCCCCCCCCCCEEEEEeCCCCCCCCCchHHHHHHHHHHHHHHHHHhCCCcC
Q 004766 670 KLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLGASWV 731 (732)
Q Consensus 670 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~~~~ 731 (732)
+++++|+++ ...+.++.+++++++||++..+..+.++..+.+++||.++|+..++
T Consensus 692 ~~~~~L~~~-------~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~Fl~~~l~~~~~ 746 (751)
T 2xe4_A 692 KWVSKLREC-------KTDNNEILLNIDMESGHFSAKDRYKFWKESAIQQAFVCKHLKSTVR 746 (751)
T ss_dssp HHHHHHHHH-------CCSCCCEEEEEETTCCSSCCSSHHHHHHHHHHHHHHHHHHTTCCSC
T ss_pred HHHHHHHhc-------CCCCceEEEEECCCCCCCCcCChhHHHHHHHHHHHHHHHHhCCCch
Confidence 999999987 2234678899999999999876655678889999999999998764
|
| >4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-91 Score=794.04 Aligned_cols=657 Identities=24% Similarity=0.376 Sum_probs=558.7
Q ss_pred eeecCccccCCCccccCCCCHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCC-CCCCcEEeCCEEEEEEEcCCC
Q 004766 24 DDYHGVKIVDPYRWLEDPDAEEVKDFVQKQVELTDSVLKNCDVRDKLREKITKLFDSP-RYDAPFKRGNKYFYFHNTGLQ 102 (732)
Q Consensus 24 ~~~~g~~~~D~y~wLed~~~~~~~~~l~~qn~~t~~~l~~~~~~~~l~~~~~~~~~~~-~~~~p~~~g~~~~~~~~~~~~ 102 (732)
+.-||+++.|||+||||.++|++++||++||++|.++|+++|.+++|+++++++++.+ +++.|.+.|+++||+|+++.+
T Consensus 13 ~~~~~~~~~Dpy~wLEd~~~~~~~~wv~aqN~~T~~~l~~~p~~~~l~~~~~~~~~~~~ri~~p~~~g~~~y~f~~d~~~ 92 (711)
T 4hvt_A 13 DNNKQIFNPKETKFLEEAEGVEALEWAKERTSKTEKALQAMQEYKQIKKEIETIFYDQRKTPYGVIRKGYVYNFWMDDKN 92 (711)
T ss_dssp -------CHHHHGGGGSSSSSHHHHHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHTCTTSCCCCEEETTEEEEEECCSSC
T ss_pred cCCCceeeCCCchhhcCCCCHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHhccccccCCcEEECCEEEEEEecCCC
Confidence 4457999999999999999999999999999999999999999999999999999886 899999999999999999999
Q ss_pred CeeEEEEEeCC------CCCceEEeCCCCcCCC-CC-EEEEeEE-ECCCCcEEEEEEeccCCceEEEEEEECCCCceecc
Q 004766 103 PQSVLYVQDSL------DAKAKVLLDPNTLSDD-GT-AALIKVS-VSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEAD 173 (732)
Q Consensus 103 ~~~~l~~r~~~------~~~~~~l~D~~~l~~~-~~-~~~~~~~-~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~ 173 (732)
+| .||||+.. ++++++|||+|+|+++ |. +.+.+.+ +||||+++||+++.+|+++..|+++|++||+.+++
T Consensus 93 ~~-gl~rrt~~~~~~~~~p~wevllD~d~l~~~~g~~~~~~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~ 171 (711)
T 4hvt_A 93 PQ-GLWRRTLVDNYSKDKPNWEVLIDFDKLSKKIGKKVAYRGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKN 171 (711)
T ss_dssp SS-CEEEEEEHHHHTSSSCCCEEEEEHHHHHHHHTSCEEEEEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTT
T ss_pred Cc-EEEEEccchhcccCCCCcEEEeccccccccCCCcEEEeceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCC
Confidence 98 79998543 4667999999999876 65 9999998 99999999999999999999999999999998876
Q ss_pred ccc-c--------eeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCCcccEEEEEECCCCCCCCeEEEecCCCCee
Q 004766 174 ALS-W--------FKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKY 244 (732)
Q Consensus 174 ~~~-~--------~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~ 244 (732)
.+. . ++++.++|. |+++++|.+... .+..++++++++||+|++||++.++++||+++++. +
T Consensus 172 ~~~~~~k~~~~~~~~~~~~~W~-d~~~~~~~~~~~--------~~~~~~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~-~ 241 (711)
T 4hvt_A 172 GFEPITNSGKLLEGKFTYPTWI-NKDTIIFNLVLH--------KNEITSSLYPNSLYIWKRGESIEKAKKLFEVPKEY-I 241 (711)
T ss_dssp CSCCBCTTCCBCCEETCCEEEE-ETTEEEECCCCS--------TTCBCTTSSBCEEEEEETTSCGGGCEEEEECCTTS-C
T ss_pred CcccccccccccccccceeeEE-CCCEEEEEeCCC--------CCCcCcCCCCCEEEEEECCCChHHCeEEeccCCCc-e
Confidence 554 2 244667998 777888875433 34567788999999999999999999999988764 4
Q ss_pred EEEeEEecCCcE----EEEEEecCCcceEEEEEEeCCCCCCCcccccccCCCCCcEEeeecccceEEEEEecCCeEEEEe
Q 004766 245 IFSGHVTEDGQY----LVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLT 320 (732)
Q Consensus 245 ~~~~~~SpDg~~----l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s 320 (732)
..++..++|+++ +++... .+...+++|+++++... .++..+....+..+ ... .++++|+.+
T Consensus 242 ~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~~~~~~~~------------~~~~~l~~~~~~~~-~~~-~~~~~~~~~ 306 (711)
T 4hvt_A 242 YVSAGKLLSDTISSSLIFISAN-KDFYNYDNYILDTKYKN------------LKLQKINMPSDATL-QGS-FKEYVFWLL 306 (711)
T ss_dssp EEEEEESSCTTTCSSEEEEEEE-SSSSCEEEEEEECSSSS------------CEEEECCSCTTCEE-EEE-ETTEEEEEC
T ss_pred EEEEEEecCCCceEEEEEEEEe-cccCceeEEEEcCCCCC------------CcceEeecCCcceE-eee-ECCEEEEEE
Confidence 567888999985 444433 23346899999976421 11344543333332 233 366888866
Q ss_pred CCC-------CCCceEEEEeCCCC-------CCceEeccCCCCCceeEEEEecCCEEEEEEecCCeeEEEEEeCCCCc-e
Q 004766 321 NKD-------APKYKIIRVDLKEP-------NDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGS-L 385 (732)
Q Consensus 321 ~~~-------~~~~~l~~~d~~~~-------~~~~~l~~~~~~~~l~~~~~~~~~~l~~~~~~~g~~~l~~~d~~~g~-~ 385 (732)
..+ .++++|+.+|++++ ..|++++++..+..++++.+++ +++++...+++.++|+++++.+|+ .
T Consensus 307 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~l~~~~~~~~~~~l~~~~~~~g~~~ 385 (711)
T 4hvt_A 307 RSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTK-DRVFLATYDNVVAKVVTFTLENEQWT 385 (711)
T ss_dssp SSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECS-SCEEEEEEETTEEEEEEECEETTEEC
T ss_pred CcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEEC-CEEEEEEEECCEEEEEEEECCCCceE
Confidence 432 37889999998763 3588877777678899999998 789999999999999999987675 2
Q ss_pred eee-cccc-cceeeEeecccCCcEEEEEEecCCCCceEEEEECCCCCCceEEEEeecCCCCCCCCceEEEEEEEccCCCe
Q 004766 386 LHQ-LPIE-IGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTETPEMKIFRETIIPGFDRSEFHVHQVFVPSKDGST 463 (732)
Q Consensus 386 ~~~-l~~~-~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~s~dG~~ 463 (732)
.+. +.+| .+.+..++.+++++.++++++|+++|+++|.+|+. ++ .+.++.. .+.+++..+.++++++++.|| +
T Consensus 386 ~~~~i~lp~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~-~~--~~~l~~~-~~~~~~~~~~~e~v~~~s~DG-~ 460 (711)
T 4hvt_A 386 KPVVLKLPYQNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT-HE--LKIIRKA-LYSFDSENYVLEQKEATSFDG-V 460 (711)
T ss_dssp CCEEECCCSTTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT-SC--EEEEECC-SSCCCGGGEEEEEEEEECTTS-C
T ss_pred EEeccCCCCCeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC-Cc--EEEEecC-CcccCcccCeeEEEEEECCCC-e
Confidence 355 7777 56777777778889999999999999999999988 63 6777764 345777788899999999999 9
Q ss_pred eEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCccHHH
Q 004766 464 KIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFD 543 (732)
Q Consensus 464 ~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~ 543 (732)
+|++++++|++.+.+++.|+||++|||++.+..+.|+..+.+.|.++||+|+++|+||+|++|+.|+..+...++.+.++
T Consensus 461 ~i~~~l~~P~~~~~~~~~P~vl~~HGG~~~~~~~~~~~~~~q~la~~Gy~Vv~~d~RGsg~~G~~~~~~~~~~~~~~~~~ 540 (711)
T 4hvt_A 461 KIPYFLVYKKGIKFDGKNPTLLEAYGGFQVINAPYFSRIKNEVWVKNAGVSVLANIRGGGEFGPEWHKSAQGIKRQTAFN 540 (711)
T ss_dssp EEEEEEEEETTCCCSSCCCEEEECCCCTTCCCCCCCCHHHHHHTGGGTCEEEEECCTTSSTTCHHHHHTTSGGGTHHHHH
T ss_pred EEEEEEEecCCCCCCCCccEEEEECCCCCCCCCCcccHHHHHHHHHCCCEEEEEeCCCCCCcchhHHHhhhhccCcCcHH
Confidence 99999999998766789999999999999999999998775345559999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCcccccccccCCCCCccccccCCCCCHHHH
Q 004766 544 DFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHAWVSDFGCSEEEEEF 623 (732)
Q Consensus 544 D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~~~~~~~g~p~~~~~~ 623 (732)
|++++++||++++++|++||+|+|+|+||++++++++++|++|+|+|+.+|++|+..+..++.+..|..+||+|.+++.+
T Consensus 541 D~~aav~~L~~~~~~d~~rI~i~G~S~GG~la~~~a~~~pd~f~a~V~~~pv~D~~~~~~~~~~~~~~~~~G~p~~~~~~ 620 (711)
T 4hvt_A 541 DFFAVSEELIKQNITSPEYLGIKGGSNGGLLVSVAMTQRPELFGAVACEVPILDMIRYKEFGAGHSWVTEYGDPEIPNDL 620 (711)
T ss_dssp HHHHHHHHHHHTTSCCGGGEEEEEETHHHHHHHHHHHHCGGGCSEEEEESCCCCTTTGGGSTTGGGGHHHHCCTTSHHHH
T ss_pred HHHHHHHHHHHcCCCCcccEEEEeECHHHHHHHHHHHhCcCceEEEEEeCCccchhhhhccccchHHHHHhCCCcCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988777777788999999988889
Q ss_pred HHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHH-HHhhcCCCCCCCCCCCEEEEEeCCCCC
Q 004766 624 YWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATM-QYVLCTSLENSPQTNPIIGRIERKAGH 702 (732)
Q Consensus 624 ~~~~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~gH 702 (732)
+.+.++||++++++. +.+||+||+||.+|.+||+.++.+++++| +++ |+|+++++++++||
T Consensus 621 ~~l~~~SP~~~v~~i--------~~~pPvLii~G~~D~~Vp~~~s~~~~~aL~~~~----------g~pv~l~~~p~~gH 682 (711)
T 4hvt_A 621 LHIKKYAPLENLSLT--------QKYPTVLITDSVLDQRVHPWHGRIFEYVLAQNP----------NTKTYFLESKDSGH 682 (711)
T ss_dssp HHHHHHCGGGSCCTT--------SCCCEEEEEEETTCCSSCTHHHHHHHHHHTTCT----------TCCEEEEEESSCCS
T ss_pred HHHHHcCHHHHHhhc--------CCCCCEEEEecCCCCcCChHHHHHHHHHHHHHc----------CCCEEEEEECCCCC
Confidence 999999999999984 35689999999999999999999999999 987 89999999999999
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHhCCCc
Q 004766 703 GVGLPTQKMIDEAADRYGFMAKMLGASW 730 (732)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~fl~~~l~~~~ 730 (732)
++..+..+.+...+.+++||.++||..+
T Consensus 683 g~~~~~~~~~~~~~~i~~FL~~~Lg~~i 710 (711)
T 4hvt_A 683 GSGSDLKESANYFINLYTFFANALKLKI 710 (711)
T ss_dssp SSCSSHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred cCcCCcchHHHHHHHHHHHHHHHhCCcc
Confidence 9987777678888999999999999875
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-54 Score=496.25 Aligned_cols=589 Identities=14% Similarity=0.090 Sum_probs=430.4
Q ss_pred CCCCCcEEeCCEEEEEEEc-CCCCeeEEEEEeCCCCCceEEeCCC-C-cCCCCCEEEEeEEE--CCCCcE-EEEEEeccC
Q 004766 81 PRYDAPFKRGNKYFYFHNT-GLQPQSVLYVQDSLDAKAKVLLDPN-T-LSDDGTAALIKVSV--SEDAKY-LAYALSYSG 154 (732)
Q Consensus 81 ~~~~~p~~~g~~~~~~~~~-~~~~~~~l~~r~~~~~~~~~l~D~~-~-l~~~~~~~~~~~~~--SPDG~~-la~~~~~~G 154 (732)
..+..|...|+++||.... ..+....||++. .++..+.|+... . .+....+.-..+.| ||||++ |||+.+.
T Consensus 24 ~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~-- 100 (662)
T 3azo_A 24 GRPACVGAVGDEVWWVAPRPAEAGRATLVRRR-ADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFG-- 100 (662)
T ss_dssp SCCEEEEEETTEEEEEEEETTTTTEEEEEEEC-TTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTT--
T ss_pred CccceeEEcCCeEEEEecCcccCCcEEEEEEC-CCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEEECC--
Confidence 4566778889998888763 334567799883 345555554332 1 11100111113445 499999 9998654
Q ss_pred CceEEEEEEECC--C-Cceecccc-----cceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCCcccEEEEEECC
Q 004766 155 SDWATIKLMRIE--D-QIVEADAL-----SWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLG 226 (732)
Q Consensus 155 ~e~~~i~v~dl~--~-g~~~~~~~-----~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~lg 226 (732)
..+||++++. + ++....+. .......++|||||+.|+|++.+.... .......+||++++.
T Consensus 101 --~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~---------~~~~~~~~i~~~~~~ 169 (662)
T 3azo_A 101 --DQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGE---------GPSDVRRFLAAVPLD 169 (662)
T ss_dssp --TCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSS---------STTCEEEEEEEEETT
T ss_pred --CCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCC---------CCCCceeEEEEEECC
Confidence 2579999998 5 66433322 233457899999999999998652100 001234689999998
Q ss_pred CCC----CCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCc---ceEEEEEEeCC-CCCCCcccccccCCCCCcEEe
Q 004766 227 TKQ----SEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCD---PVNKVYYCDLS-ALPEGLEGFKKRDGLLPFVKL 298 (732)
Q Consensus 227 t~~----~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~---~~~~l~~~d~~-~~~~~~~~~~~~~~~~~~~~l 298 (732)
++. .+...+.+ ....+...++|||||++|++.+.+... ...+||++|++ ++. ....+.+
T Consensus 170 ~~~~~~~~~~~~l~~--~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~-----------~~~~~~l 236 (662)
T 3azo_A 170 GSAAADRSAVRELSD--DAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGR-----------FADTRTL 236 (662)
T ss_dssp STTTTCGGGSEESSC--SCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSC-----------EEEEEEE
T ss_pred CCccccCCceeEEEe--cCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCc-----------ccccEEe
Confidence 721 12223320 223456689999999999998865421 14789999998 331 0013445
Q ss_pred eecc-c-ceEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCc-------eeEEEEecCCEEEEEEec
Q 004766 299 IDGF-D-AQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDV-------LESATAVNLNQMIVSYLS 369 (732)
Q Consensus 299 ~~~~-~-~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~-------l~~~~~~~~~~l~~~~~~ 369 (732)
..+. . .....|+|||+ ++|.++.++ ..+|+++|+++++ ++.+++...... +..+.+++++++++....
T Consensus 237 ~~~~~~~~~~~~~spdg~-l~~~~~~~~-~~~l~~~~~~~~~-~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~ 313 (662)
T 3azo_A 237 LGGPEEAIAQAEWAPDGS-LIVATDRTG-WWNLHRVDPATGA-ATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK 313 (662)
T ss_dssp EEETTBCEEEEEECTTSC-EEEEECTTS-SCEEEEECTTTCC-EEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS
T ss_pred CCCCCceEcceEECCCCe-EEEEECCCC-CeEEEEEECCCCc-eeecccccccccCccccccCceEeEeCCCEEEEEEEc
Confidence 4432 2 22346999998 888888754 5689999987776 566665432211 346777776788888888
Q ss_pred CCeeEEEEEeCCCCceeeecccccceeeEeecccCCcEEEEEEecCCCCceEEEEECCCCCCceEEEEeecCCCCCCCCc
Q 004766 370 DVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTETPEMKIFRETIIPGFDRSEF 449 (732)
Q Consensus 370 ~g~~~l~~~d~~~g~~~~~l~~~~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~~~~~~~l~~~~~~~~~~~~~ 449 (732)
+..+|+++|+++|+ ++.|+.+.+.+..+. +++++.+++..++...|.++|.+|+.+++ .+.+.....+.+++..+
T Consensus 314 -~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~-s~~~~~~~~~~~~~~~~~~i~~~d~~~g~--~~~l~~~~~~~~~~~~~ 388 (662)
T 3azo_A 314 -GAAVLGILDPESGE-LVDAAGPWTEWAATL-TVSGTRAVGVAASPRTAYEVVELDTVTGR--ARTIGARHTDPVDPAYY 388 (662)
T ss_dssp -SSCEEEEEETTTTE-EEECCSSCCEEEEEE-EEETTEEEEEEEETTEEEEEEEEETTTCC--EEEEESCCCCSSCGGGS
T ss_pred -CccEEEEEECCCCc-EEEecCCCCeEEEEE-ecCCCEEEEEEcCCCCCCEEEEEECCCCc--eEEeecCCcccCCcccc
Confidence 88899999998666 477876666665542 56788899999999999999999998885 66666543334554445
Q ss_pred -eEEEEEEEccCCCeeEEEEEEEcCCCC----CCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCC
Q 004766 450 -HVHQVFVPSKDGSTKIPMFIVSKKNIK----LDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGE 524 (732)
Q Consensus 450 -~~~~~~~~s~dG~~~i~~~~~~p~~~~----~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~ 524 (732)
..+.+.+++.+| .+|+++++.|++.. .+++.|+||++||+++....+.|.... ..|+++||+|+++|+||+++
T Consensus 389 ~~~~~~~~~~~dg-~~i~~~~~~P~~~~~~~~~~~~~p~vv~~HG~~~~~~~~~~~~~~-~~l~~~G~~v~~~d~rG~~~ 466 (662)
T 3azo_A 389 PEPQIRTFTAPDG-REIHAHIYPPHSPDFTGPADELPPYVVMAHGGPTSRVPAVLDLDV-AYFTSRGIGVADVNYGGSTG 466 (662)
T ss_dssp CCCEEEEEECTTS-CEEEEEEECCCCSSEECCTTCCCCEEEEECSSSSSCCCCSCCHHH-HHHHTTTCEEEEEECTTCSS
T ss_pred CcceEEEEEcCCC-CEEEEEEECCCCccccCCCCCCccEEEEECCCCCccCcccchHHH-HHHHhCCCEEEEECCCCCCC
Confidence 468889998899 99999999998754 457899999999999887767777654 45555999999999999999
Q ss_pred CchhHHhcccccCCccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCccccccccc-
Q 004766 525 YGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHK- 603 (732)
Q Consensus 525 ~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~- 603 (732)
+|+.|........+...++|+.+++++|++++++|++||+|+|+|+||+++++++.+ |++|+|+|+.+|+.|+..+..
T Consensus 467 ~G~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~i~l~G~S~GG~~a~~~~~~-~~~~~~~v~~~~~~~~~~~~~~ 545 (662)
T 3azo_A 467 YGRAYRERLRGRWGVVDVEDCAAVATALAEEGTADRARLAVRGGSAGGWTAASSLVS-TDVYACGTVLYPVLDLLGWADG 545 (662)
T ss_dssp SCHHHHHTTTTTTTTHHHHHHHHHHHHHHHTTSSCTTCEEEEEETHHHHHHHHHHHH-CCCCSEEEEESCCCCHHHHHTT
T ss_pred ccHHHHHhhccccccccHHHHHHHHHHHHHcCCcChhhEEEEEECHHHHHHHHHHhC-cCceEEEEecCCccCHHHHhcc
Confidence 999999887777777889999999999999999999999999999999999999887 999999999999999866543
Q ss_pred CCC--CCccc-cccCCCCCHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhc
Q 004766 604 FTI--GHAWV-SDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLC 680 (732)
Q Consensus 604 ~~~--~~~~~-~~~g~p~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~ 680 (732)
... ...+. ..+|.+. +..+.+..+||+.++.+ +.+|+||+||.+|.+||+.++.+++++|+++
T Consensus 546 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~sp~~~~~~----------~~~P~lii~G~~D~~vp~~~~~~~~~~l~~~-- 611 (662)
T 3azo_A 546 GTHDFESRYLDFLIGSFE--EFPERYRDRAPLTRADR----------VRVPFLLLQGLEDPVCPPEQCDRFLEAVAGC-- 611 (662)
T ss_dssp CSCGGGTTHHHHHTCCTT--TCHHHHHHTCGGGGGGG----------CCSCEEEEEETTCSSSCTHHHHHHHHHHTTS--
T ss_pred cccchhhHhHHHHhCCCc--cchhHHHhhChHhHhcc----------CCCCEEEEeeCCCCCCCHHHHHHHHHHHHHc--
Confidence 111 11111 1245432 22345678899998887 6789999999999999999999999999987
Q ss_pred CCCCCCCCCCCEEEEEeCCCCCCCCCchHHHHHHHHHHHHHHHHHhCCCc
Q 004766 681 TSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLGASW 730 (732)
Q Consensus 681 ~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~~~ 730 (732)
++++++++++++||++..... ..+..+.+++||.++|+...
T Consensus 612 --------g~~~~~~~~~~~gH~~~~~~~-~~~~~~~~~~fl~~~l~~~~ 652 (662)
T 3azo_A 612 --------GVPHAYLSFEGEGHGFRRKET-MVRALEAELSLYAQVFGVEV 652 (662)
T ss_dssp --------CCCEEEEEETTCCSSCCSHHH-HHHHHHHHHHHHHHHTTCCC
T ss_pred --------CCCEEEEEECCCCCCCCChHH-HHHHHHHHHHHHHHHhCCCC
Confidence 899999999999999876544 36788899999999998753
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-51 Score=476.23 Aligned_cols=584 Identities=12% Similarity=0.089 Sum_probs=411.1
Q ss_pred EEeCCEEEEEEEcCCC----CeeEEEEEeCCCCCceEEeCCCCcCCCCCEEEEeEEECCCCcEEEEEEeccCCceEEEEE
Q 004766 87 FKRGNKYFYFHNTGLQ----PQSVLYVQDSLDAKAKVLLDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSGSDWATIKL 162 (732)
Q Consensus 87 ~~~g~~~~~~~~~~~~----~~~~l~~r~~~~~~~~~l~D~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v 162 (732)
+++|.+++|..++... ....+|+.+..+++.+.|... ...+..++|||||++|||+.+ .+||+
T Consensus 70 Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~l~~~-------~~~~~~~~~SPdG~~la~~~~------~~i~~ 136 (740)
T 4a5s_A 70 SPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEERI-------PNNTQWVTWSPVGHKLAYVWN------NDIYV 136 (740)
T ss_dssp CTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC-------CTTEEEEEECSSTTCEEEEET------TEEEE
T ss_pred CCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEEcccC-------CCcceeeEECCCCCEEEEEEC------CeEEE
Confidence 3477787777653221 124566666554443222211 112568999999999999953 37999
Q ss_pred EECCCCceecccccce-------------------eeeeEEEEeCCcEEEEEEecCCCCC-CC---CCCC--Cc------
Q 004766 163 MRIEDQIVEADALSWF-------------------KFSSIAWTHDSKGFFYSRYPAPKEG-KD---MDAG--TE------ 211 (732)
Q Consensus 163 ~dl~~g~~~~~~~~~~-------------------~~~~~~WspDg~~l~y~~~~~~~~~-~~---~~~~--~~------ 211 (732)
+|+.+|+....+..+. ....++|||||+.|+|.+.+..... .. .... ..
T Consensus 137 ~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~ 216 (740)
T 4a5s_A 137 KIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRV 216 (740)
T ss_dssp ESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEE
T ss_pred EECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceee
Confidence 9999988544332211 0124899999999999987653110 00 0000 00
Q ss_pred ---c--cCCcccEEEEEECCC---CCCCCeEEEecC----CCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCC
Q 004766 212 ---T--DSNLYHEFYYHFLGT---KQSEDILCWKDP----EHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSAL 279 (732)
Q Consensus 212 ---~--~~~~~~~v~~~~lgt---~~~~~~~v~~~~----~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~ 279 (732)
. ......+|+++++.+ +......-...+ .+..++..++|||||+.+++..++.. ....|+++|++++
T Consensus 217 ~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~-~~~~i~~~d~~tg 295 (740)
T 4a5s_A 217 PYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQ-NYSVMDICDYDES 295 (740)
T ss_dssp ECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESST-TEEEEEEEEEETT
T ss_pred cCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCC-CEEEEEEEECCCC
Confidence 0 001123689999987 532111112111 13457789999999998887776543 3567999999875
Q ss_pred C----CCcccccccCCCCCcEEee-e---ccc----ceEEEEEecCCeEE-EEeCCCCCCceEEEEeCCCCCCceEeccC
Q 004766 280 P----EGLEGFKKRDGLLPFVKLI-D---GFD----AQYEVIANDDTVFT-FLTNKDAPKYKIIRVDLKEPNDWFEVIPE 346 (732)
Q Consensus 280 ~----~~~~~~~~~~~~~~~~~l~-~---~~~----~~~~~~s~dg~~l~-~~s~~~~~~~~l~~~d~~~~~~~~~l~~~ 346 (732)
. +.. ...+. . ++. .....|+|||+.|+ +.+.+++ ..+|+++|++++. .+.|+..
T Consensus 296 ~~~~~~~~-----------~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G-~~~l~~~~~~~~~-~~~lT~g 362 (740)
T 4a5s_A 296 SGRWNCLV-----------ARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEG-YRHICYFQIDKKD-CTFITKG 362 (740)
T ss_dssp TTEEEECG-----------GGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTS-CEEEEEEETTCSS-CEESCCS
T ss_pred ccccceeE-----------EEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCC-ceEEEEEECCCCc-eEecccC
Confidence 4 110 11111 1 111 11346999999988 6666654 6789999998876 4566654
Q ss_pred CCCCceeEEEEecCCEEEEEEec----CCeeEEEEEeCCCCceeeecccc----cceeeEeecccCCcEEEEEEecCCCC
Q 004766 347 AERDVLESATAVNLNQMIVSYLS----DVKYVLQIRDLKNGSLLHQLPIE----IGSVNAISARREDSVVFISFTSFLIP 418 (732)
Q Consensus 347 ~~~~~l~~~~~~~~~~l~~~~~~----~g~~~l~~~d~~~g~~~~~l~~~----~g~v~~~~~s~d~~~l~~~~ss~~~p 418 (732)
. ..+..+...+++.|++.... .+..+|+++++++++..+.|+.. .+.+..++++++++.+++.++++. |
T Consensus 363 ~--~~v~~~~~~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~-~ 439 (740)
T 4a5s_A 363 T--WEVIGIEALTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPG-L 439 (740)
T ss_dssp S--SCEEEEEEECSSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBS-S
T ss_pred C--EEEEEEEEEeCCEEEEEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEEEEEeCCCC-C
Confidence 3 33444433335788888876 45679999999744432356532 355667889999999999999987 8
Q ss_pred ceEEEEECCCCCCceEEEEeec-C-CCCCCCCc-eEEEEEEEccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccC
Q 004766 419 GIVYQCNLKTETPEMKIFRETI-I-PGFDRSEF-HVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISV 495 (732)
Q Consensus 419 ~~~y~~d~~~~~~~~~~l~~~~-~-~~~~~~~~-~~~~~~~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~ 495 (732)
+.++.++..+++ ...++.... . +.++...+ .++.+.+ +.|| .+|+++++.|+++...+++|+||++||+++...
T Consensus 440 p~~~l~~~~~~~-~~~~l~~n~~~~~~~~~~~~~~~~~~~~-~~dg-~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~ 516 (740)
T 4a5s_A 440 PLYTLHSSVNDK-GLRVLEDNSALDKMLQNVQMPSKKLDFI-ILNE-TKFWYQMILPPHFDKSKKYPLLLDVYAGPCSQK 516 (740)
T ss_dssp CEEEEEETTTTE-EEEEEECCHHHHHHHTTEECCEEEEEEE-EETT-EEEEEEEEECTTCCTTSCEEEEEECCCCTTCCC
T ss_pred CEEEEEECCCCc-EEEEeccChhhhhhhhhccCCccEEEEE-ccCC-eEEEEEEEeCCCCCCCCCccEEEEECCCCcccc
Confidence 899999988774 234443211 0 11222233 4455666 7799 999999999998777789999999999987743
Q ss_pred -CCCcChhHHHHHH-hcCcEEEEEcccCCCCCchhHHhcccccCCccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHH
Q 004766 496 -TPSFSVSRTILMR-HLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGL 573 (732)
Q Consensus 496 -~~~~~~~~~~~l~-~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~ 573 (732)
...|...+...+. ++||+|+++|+||+|++|..|........+...++|+.+++++|++++++|++||+|+|+|+||+
T Consensus 517 ~~~~~~~~~~~~l~~~~G~~Vv~~D~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~ 596 (740)
T 4a5s_A 517 ADTVFRLNWATYLASTENIIVASFDGRGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGY 596 (740)
T ss_dssp CCCCCCCSHHHHHHHTTCCEEEEECCTTCSSSCHHHHGGGTTCTTSHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHH
T ss_pred cccccCcCHHHHHHhcCCeEEEEEcCCCCCcCChhHHHHHHhhhCcccHHHHHHHHHHHHhcCCcCCccEEEEEECHHHH
Confidence 3444433434444 58999999999999999999999988888888999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCeeeEEEEcCCcccccccccCCCCCccccc-cCCCCCHHHHHHHHhcCcccCCCCCCCCCCCCCCCC-Ce
Q 004766 574 LVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHAWVSD-FGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQY-PS 651 (732)
Q Consensus 574 l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~~~~~~-~g~p~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~-~p 651 (732)
+++.++.++|++|+|+|+.+|+.|+..+.. .|... +|.|...+..+.+...+|+.++++ +. +|
T Consensus 597 ~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~-----~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~----------i~~~P 661 (740)
T 4a5s_A 597 VTSMVLGSGSGVFKCGIAVAPVSRWEYYDS-----VYTERYMGLPTPEDNLDHYRNSTVMSRAEN----------FKQVE 661 (740)
T ss_dssp HHHHHHTTTCSCCSEEEEESCCCCGGGSBH-----HHHHHHHCCSSTTTTHHHHHHSCSGGGGGG----------GGGSE
T ss_pred HHHHHHHhCCCceeEEEEcCCccchHHhhh-----HHHHHHcCCCCccccHHHHHhCCHHHHHhc----------CCCCc
Confidence 999999999999999999999999865432 22222 355532333445678899988887 45 49
Q ss_pred EEEEeeCCCCCCCchHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeCCCCCCCCCchHHHHHHHHHHHHHHHHHhCCC
Q 004766 652 TLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLGAS 729 (732)
Q Consensus 652 ~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~~ 729 (732)
+||+||.+|.+||+.++.+++++|+++ +++++++++|++||++..... ..+.+..+.+||.++|+..
T Consensus 662 ~Lii~G~~D~~v~~~~~~~l~~~l~~~----------g~~~~~~~~~~~~H~~~~~~~-~~~~~~~i~~fl~~~l~~~ 728 (740)
T 4a5s_A 662 YLLIHGTADDNVHFQQSAQISKALVDV----------GVDFQAMWYTDEDHGIASSTA-HQHIYTHMSHFIKQCFSLP 728 (740)
T ss_dssp EEEEEETTCSSSCTHHHHHHHHHHHHT----------TCCCEEEEETTCCTTCCSHHH-HHHHHHHHHHHHHHHTTCC
T ss_pred EEEEEcCCCCccCHHHHHHHHHHHHHC----------CCCeEEEEECCCCCcCCCCcc-HHHHHHHHHHHHHHHcCCC
Confidence 999999999999999999999999998 899999999999999865544 3678889999999999764
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-49 Score=448.42 Aligned_cols=553 Identities=14% Similarity=0.138 Sum_probs=403.5
Q ss_pred HHHHHHHHHhhcCCCCCCCc-EEeCCEEEEEEEcCCCCeeEEEEEeCCCCCceEEeCCCCcCCCCCEEEEeEEECCCCcE
Q 004766 67 RDKLREKITKLFDSPRYDAP-FKRGNKYFYFHNTGLQPQSVLYVQDSLDAKAKVLLDPNTLSDDGTAALIKVSVSEDAKY 145 (732)
Q Consensus 67 ~~~l~~~~~~~~~~~~~~~p-~~~g~~~~~~~~~~~~~~~~l~~r~~~~~~~~~l~D~~~l~~~~~~~~~~~~~SPDG~~ 145 (732)
..++.+.++.+...+-.++- +++|.+++|.....+ ...||... +++.+.|+... ...+..+.|||| +
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~DG~~la~~s~~~g--~~~lw~~~--~g~~~~lt~~~------~~~~~~~~~spd--~ 76 (582)
T 3o4h_A 9 FSRIVRDVERLIAVEKYSLQGVVDGDKLLVVGFSEG--SVNAYLYD--GGETVKLNREP------INSVLDPHYGVG--R 76 (582)
T ss_dssp HHHHHHHHHHHHHSCEEEEEEEETTTEEEEEEEETT--EEEEEEEE--TTEEEECCSSC------CSEECEECTTCS--E
T ss_pred HHHHHHHHHHHhccchheeecCCCCCeEEEEEccCC--ceeEEEEc--CCCcEeeeccc------ccccccccCCCC--e
Confidence 34455556655544433332 457888888876333 35688863 34444444321 124568999999 6
Q ss_pred EEEEEec-cCCceEEEEEEEC--CCCceecccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCCcccEEEE
Q 004766 146 LAYALSY-SGSDWATIKLMRI--EDQIVEADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYY 222 (732)
Q Consensus 146 la~~~~~-~G~e~~~i~v~dl--~~g~~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 222 (732)
++|+.+. +|.+...||++++ .++........+ ....+|||||+.++|++... ..+.+
T Consensus 77 ~l~~~~~~~g~~~~~l~~~~~~~~g~~~~l~~~~~--~~~~~~s~dg~~~~~~s~~~------------------~~~~l 136 (582)
T 3o4h_A 77 VILVRDVSKGAEQHALFKVNTSRPGEEQRLEAVKP--MRILSGVDTGEAVVFTGATE------------------DRVAL 136 (582)
T ss_dssp EEEEEECSTTSCCEEEEEEETTSTTCCEECTTSCS--BEEEEEEECSSCEEEEEECS------------------SCEEE
T ss_pred EEEEeccCCCCcceEEEEEeccCCCccccccCCCC--ceeeeeCCCCCeEEEEecCC------------------CCceE
Confidence 8888775 5666788999998 655432112222 24679999999998886432 12336
Q ss_pred EECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCCCCcEEeeecc
Q 004766 223 HFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGF 302 (732)
Q Consensus 223 ~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~ 302 (732)
|++.++.. ..+...+. .+++|||||++|++.+.+... ...||++|+++++ .+.++...
T Consensus 137 ~d~~~g~~--~~l~~~~~-----~~~~~spDG~~la~~~~~~~~-~~~i~~~d~~~g~--------------~~~l~~~~ 194 (582)
T 3o4h_A 137 YALDGGGL--RELARLPG-----FGFVSDIRGDLIAGLGFFGGG-RVSLFTSNLSSGG--------------LRVFDSGE 194 (582)
T ss_dssp EEEETTEE--EEEEEESS-----CEEEEEEETTEEEEEEEEETT-EEEEEEEETTTCC--------------CEEECCSS
T ss_pred EEccCCcE--EEeecCCC-----ceEEECCCCCEEEEEEEcCCC-CeEEEEEcCCCCC--------------ceEeecCC
Confidence 67766532 23443322 478999999999988765432 3569999998753 34454432
Q ss_pred cc-eEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEE--------EecCCEEEEEEecCCee
Q 004766 303 DA-QYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESAT--------AVNLNQMIVSYLSDVKY 373 (732)
Q Consensus 303 ~~-~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~--------~~~~~~l~~~~~~~g~~ 373 (732)
.. ....|||||+.|+ .++.++ ..+|+++|++++. .+ ++... ...+..+. |++|+.++++...++.
T Consensus 195 ~~~~~~~~SpDG~~l~-~~~~~~-~~~i~~~d~~~~~-~~-~~~~~-~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~- 268 (582)
T 3o4h_A 195 GSFSSASISPGMKVTA-GLETAR-EARLVTVDPRDGS-VE-DLELP-SKDFSSYRPTAITWLGYLPDGRLAVVARREGR- 268 (582)
T ss_dssp CEEEEEEECTTSCEEE-EEECSS-CEEEEEECTTTCC-EE-ECCCS-CSHHHHHCCSEEEEEEECTTSCEEEEEEETTE-
T ss_pred CccccceECCCCCEEE-EccCCC-eeEEEEEcCCCCc-EE-EccCC-CcChhhhhhccccceeEcCCCcEEEEEEcCCc-
Confidence 22 2346999999988 444433 4689999999887 34 44432 23344445 8887788888888875
Q ss_pred EEEEEeCCCCceeeecccccceeeEeecccCCcEEEEEEecCCCCceEEEEECCCCCCceEEEEeecCCCCCC----CCc
Q 004766 374 VLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTETPEMKIFRETIIPGFDR----SEF 449 (732)
Q Consensus 374 ~l~~~d~~~g~~~~~l~~~~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~~~~~~~l~~~~~~~~~~----~~~ 449 (732)
+.+|++ |+..+ .+.+.+..++++ ++. ++++.++..+|+++|.+|+.+ + .+.+ .+++ ...
T Consensus 269 -~~l~~~--g~~~~---~~~~~v~~~~~s-dg~-~l~~~s~~~~p~~l~~~d~~~-~--~~~l------~~~~~~~~~~~ 331 (582)
T 3o4h_A 269 -SAVFID--GERVE---APQGNHGRVVLW-RGK-LVTSHTSLSTPPRIVSLPSGE-P--LLEG------GLPEDLRRSIA 331 (582)
T ss_dssp -EEEEET--TEEEC---CCSSEEEEEEEE-TTE-EEEEEEETTEEEEEEEETTCC-E--EECC------CCCHHHHHTEE
T ss_pred -EEEEEE--CCeec---cCCCceEEEEec-CCE-EEEEEcCCCCCCeEEEEcCCC-c--eEEE------ecCCccccccC
Confidence 455555 65532 234667778888 664 668889999999999999764 2 3333 1232 223
Q ss_pred eEEEEEEEccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhH
Q 004766 450 HVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEW 529 (732)
Q Consensus 450 ~~~~~~~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~ 529 (732)
..+.+.+++.+| .+|+++++.|++.. .+.|+||++||+++......|.... ..|+++||+|+++|+||++++|..|
T Consensus 332 ~~~~~~~~~~~g-~~i~~~~~~p~~~~--~~~p~vv~~HG~~~~~~~~~~~~~~-~~l~~~G~~v~~~d~rG~~~~G~s~ 407 (582)
T 3o4h_A 332 GSRLVWVESFDG-SRVPTYVLESGRAP--TPGPTVVLVHGGPFAEDSDSWDTFA-ASLAAAGFHVVMPNYRGSTGYGEEW 407 (582)
T ss_dssp EEEEEEEECTTS-CEEEEEEEEETTSC--SSEEEEEEECSSSSCCCCSSCCHHH-HHHHHTTCEEEEECCTTCSSSCHHH
T ss_pred cceEEEEECCCC-CEEEEEEEcCCCCC--CCCcEEEEECCCcccccccccCHHH-HHHHhCCCEEEEeccCCCCCCchhH
Confidence 678899999999 99999999998753 4899999999998876667776654 4455599999999999999999999
Q ss_pred HhcccccCCccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCcccccccccCCCCCc
Q 004766 530 HKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHA 609 (732)
Q Consensus 530 ~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~~ 609 (732)
............++|+.+++++|++++.+| ||+|+|+|+||++++.++.++|++|+++|+.+|+.|+..+........
T Consensus 408 ~~~~~~~~~~~~~~d~~~~~~~l~~~~~~d--~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~ 485 (582)
T 3o4h_A 408 RLKIIGDPCGGELEDVSAAARWARESGLAS--ELYIMGYSYGGYMTLCALTMKPGLFKAGVAGASVVDWEEMYELSDAAF 485 (582)
T ss_dssp HHTTTTCTTTHHHHHHHHHHHHHHHTTCEE--EEEEEEETHHHHHHHHHHHHSTTTSSCEEEESCCCCHHHHHHTCCHHH
T ss_pred HhhhhhhcccccHHHHHHHHHHHHhCCCcc--eEEEEEECHHHHHHHHHHhcCCCceEEEEEcCCccCHHHHhhcccchh
Confidence 998888888889999999999999998887 999999999999999999999999999999999999876554222111
Q ss_pred --ccc-ccCCCCCHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhcCCCCCC
Q 004766 610 --WVS-DFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENS 686 (732)
Q Consensus 610 --~~~-~~g~p~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~ 686 (732)
|.. .+| .++ +.+..++|+.++.+ +.+|+|++||++|.+||+.++.+++++|+++
T Consensus 486 ~~~~~~~~~--~~~---~~~~~~sp~~~~~~----------i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~-------- 542 (582)
T 3o4h_A 486 RNFIEQLTG--GSR---EIMRSRSPINHVDR----------IKEPLALIHPQNASRTPLKPLLRLMGELLAR-------- 542 (582)
T ss_dssp HHHHHHHTT--TCH---HHHHHTCGGGGGGG----------CCSCEEEEEETTCSSSCHHHHHHHHHHHHHT--------
T ss_pred HHHHHHHcC--cCH---HHHHhcCHHHHHhc----------CCCCEEEEecCCCCCcCHHHHHHHHHHHHhC--------
Confidence 222 233 333 44678899998887 7899999999999999999999999999998
Q ss_pred CCCCCEEEEEeCCCCCCCCCchHHHHHHHHHHHHHHHHHhCC
Q 004766 687 PQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLGA 728 (732)
Q Consensus 687 ~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~ 728 (732)
|+++++++++++||++..... ..+.+..+.+||.++|+.
T Consensus 543 --g~~~~~~~~~~~gH~~~~~~~-~~~~~~~i~~fl~~~l~~ 581 (582)
T 3o4h_A 543 --GKTFEAHIIPDAGHAINTMED-AVKILLPAVFFLATQRER 581 (582)
T ss_dssp --TCCEEEEEETTCCSSCCBHHH-HHHHHHHHHHHHHHHHTC
T ss_pred --CCCEEEEEECCCCCCCCChHH-HHHHHHHHHHHHHHHcCC
Confidence 899999999999999885544 467888999999999864
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-47 Score=446.64 Aligned_cols=567 Identities=14% Similarity=0.131 Sum_probs=402.3
Q ss_pred CCCcEE--eCCEEEEEEEcCCCCeeEEEEEeCCCC---CceEEeCCCCcCCCCCEEEEeEEECCCCcEEEEEEeccCCce
Q 004766 83 YDAPFK--RGNKYFYFHNTGLQPQSVLYVQDSLDA---KAKVLLDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSGSDW 157 (732)
Q Consensus 83 ~~~p~~--~g~~~~~~~~~~~~~~~~l~~r~~~~~---~~~~l~D~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~ 157 (732)
+..+.+ +|.++++... ..||+.+..++ ....+... ...+..++|||||++|||+.+
T Consensus 111 v~~~~~SpDg~~l~~~~~------~~i~~~d~~~~~~~~~~~l~~~-------~~~~~~~~~SPDG~~la~~~~------ 171 (741)
T 2ecf_A 111 IVDYQWSPDAQRLLFPLG------GELYLYDLKQEGKAAVRQLTHG-------EGFATDAKLSPKGGFVSFIRG------ 171 (741)
T ss_dssp SCCCEECTTSSEEEEEET------TEEEEEESSSCSTTSCCBCCCS-------SSCEEEEEECTTSSEEEEEET------
T ss_pred cceeEECCCCCEEEEEeC------CcEEEEECCCCCcceEEEcccC-------CcccccccCCCCCCEEEEEeC------
Confidence 344444 6777777653 34676665444 33333221 123668999999999999963
Q ss_pred EEEEEEECCCCceeccccccee-----------------eeeEEEEeCCcEEEEEEecCCCCCC----------------
Q 004766 158 ATIKLMRIEDQIVEADALSWFK-----------------FSSIAWTHDSKGFFYSRYPAPKEGK---------------- 204 (732)
Q Consensus 158 ~~i~v~dl~~g~~~~~~~~~~~-----------------~~~~~WspDg~~l~y~~~~~~~~~~---------------- 204 (732)
.+|+++|+.+|+....+..... ...++|||||+.|+|.+.+......
T Consensus 172 ~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~ 251 (741)
T 2ecf_A 172 RNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQ 251 (741)
T ss_dssp TEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEE
T ss_pred CcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEe
Confidence 1799999999885543322111 2579999999999999765421000
Q ss_pred CCC-CCCcccCCcccEEEEEECCC-CCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCC
Q 004766 205 DMD-AGTETDSNLYHEFYYHFLGT-KQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEG 282 (732)
Q Consensus 205 ~~~-~~~~~~~~~~~~v~~~~lgt-~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~ 282 (732)
.+. .+ +......|+++++.+ +... .+............++| |||++|++...........|+++|++++.
T Consensus 252 ~~~~~g---~~~~~~~l~~~d~~~~~~~~--~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~-- 323 (741)
T 2ecf_A 252 RYPAAG---DANVQVKLGVISPAEQAQTQ--WIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQ-- 323 (741)
T ss_dssp ECCBTT---SCCCEEEEEEECSSTTCCCE--EECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCC--
T ss_pred ecCCCC---CCCCeeEEEEEECCCCCceE--EecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCc--
Confidence 000 00 001223788899877 5432 22211123456678999 99999998876554456889999998753
Q ss_pred cccccccCCCCCcEEeeecccc------eEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEE-
Q 004766 283 LEGFKKRDGLLPFVKLIDGFDA------QYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESA- 355 (732)
Q Consensus 283 ~~~~~~~~~~~~~~~l~~~~~~------~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~- 355 (732)
...+...... ....|+|||+ +++.++.++ ..+|+.+++++. .+.+..+. ..+..+
T Consensus 324 ------------~~~~~~~~~~~~~~~~~~~~~spdg~-~~~~~~~~g-~~~l~~~~~~~~--~~~l~~~~--~~v~~~~ 385 (741)
T 2ecf_A 324 ------------QRVLAHETSPTWVPLHNSLRFLDDGS-ILWSSERTG-FQHLYRIDSKGK--AAALTHGN--WSVDELL 385 (741)
T ss_dssp ------------EEEEEEEECSSCCCCCSCCEECTTSC-EEEEECTTS-SCEEEEECSSSC--EEESCCSS--SCEEEEE
T ss_pred ------------eEEEEEcCCCCcCCcCCceEECCCCe-EEEEecCCC-ccEEEEEcCCCC--eeeeeecc--eEEEeEe
Confidence 2222221111 1235999998 666666544 568999997654 46665543 445555
Q ss_pred EEecC-CEEEEEEecCC--eeEEEEEeCCCCceeeecccccceeeEeecccCCcEEEEEEecCCCCceEEEEECCCCCCc
Q 004766 356 TAVNL-NQMIVSYLSDV--KYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTETPE 432 (732)
Q Consensus 356 ~~~~~-~~l~~~~~~~g--~~~l~~~d~~~g~~~~~l~~~~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~~~~ 432 (732)
.++++ +.+++....++ ..+||.++.+ |+..+.|+. ...+..+++++|++.+++.+++..+|+++|.++..++ .
T Consensus 386 ~~s~dg~~l~~~~~~~~~~~~~l~~~~~~-g~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~~~--~ 461 (741)
T 2ecf_A 386 AVDEKAGLAYFRAGIESARESQIYAVPLQ-GGQPQRLSK-APGMHSASFARNASVYVDSWSNNSTPPQIELFRANGE--K 461 (741)
T ss_dssp EEETTTTEEEEEECSSCTTCBEEEEEETT-CCCCEECCC-SCSEEEEEECTTSSEEEEEEEETTEEEEEEEEETTSC--E
T ss_pred EEeCCCCEEEEEEeCCCCceEEEEEEEcC-CCCeeeccc-CCCceEEEECCCCCEEEEEecCCCCCCeEEEEEcCCC--e
Confidence 57775 46777777765 4567777765 554466764 3445678899999999999999999999999998655 2
Q ss_pred eEEEEeecC--C--CCCCC--Cc-eEEEEEEEccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCC-CCcCh---
Q 004766 433 MKIFRETII--P--GFDRS--EF-HVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVT-PSFSV--- 501 (732)
Q Consensus 433 ~~~l~~~~~--~--~~~~~--~~-~~~~~~~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~-~~~~~--- 501 (732)
.+.+..... . .+... .+ ..+.+.+++.||..+|+++++.|++....++.|+||++||+++.... ..|..
T Consensus 462 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~P~~~~~~~~~p~vv~~hG~~~~~~~~~~~~~~~~ 541 (741)
T 2ecf_A 462 IATLVENDLADPKHPYARYREAQRPVEFGTLTAADGKTPLNYSVIKPAGFDPAKRYPVAVYVYGGPASQTVTDSWPGRGD 541 (741)
T ss_dssp EECSSCCCSSSTTSTTHHHHTTCCCEEEEEEECTTSSCEEEEEEECCSSCCTTSCEEEEEECCCSTTCCSCSSCCCCSHH
T ss_pred EEEeccCcccccccchhhhhccCCCcEEEEEEcCCCCEEEEEEEEeCCCCCCCCCcCEEEEEcCCCCcccccccccccch
Confidence 444432111 0 12222 34 67889999877635899999999876556779999999999876432 23442
Q ss_pred -hHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHh
Q 004766 502 -SRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACIN 580 (732)
Q Consensus 502 -~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~ 580 (732)
.+...|+++||+|+++|+||+|++|..|........+...++|+.+++++|.+++.+|++||+|+|+|+||++++.++.
T Consensus 542 ~~~~~~l~~~G~~v~~~d~rG~g~s~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~i~l~G~S~GG~~a~~~a~ 621 (741)
T 2ecf_A 542 HLFNQYLAQQGYVVFSLDNRGTPRRGRDFGGALYGKQGTVEVADQLRGVAWLKQQPWVDPARIGVQGWSNGGYMTLMLLA 621 (741)
T ss_dssp HHHHHHHHHTTCEEEEECCTTCSSSCHHHHHTTTTCTTTHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHHH
T ss_pred hHHHHHHHhCCCEEEEEecCCCCCCChhhhHHHhhhcccccHHHHHHHHHHHHhcCCCChhhEEEEEEChHHHHHHHHHH
Confidence 2456666699999999999999999999888777777788999999999999998899999999999999999999999
Q ss_pred hCCCeeeEEEEcCCcccccccccCCCCCccccc-cCCCCCHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEeeCC
Q 004766 581 QRPDLFGCALAHVGVMDMLRYHKFTIGHAWVSD-FGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADH 659 (732)
Q Consensus 581 ~~p~~f~a~v~~~p~~d~~~~~~~~~~~~~~~~-~g~p~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~ 659 (732)
++|++|+++|+.+|+.++..+.. .|... ++.|.. ..+.+...+|+..+.+ +.+|+||+||.+
T Consensus 622 ~~p~~~~~~v~~~~~~~~~~~~~-----~~~~~~~~~~~~--~~~~~~~~~~~~~~~~----------i~~P~lii~G~~ 684 (741)
T 2ecf_A 622 KASDSYACGVAGAPVTDWGLYDS-----HYTERYMDLPAR--NDAGYREARVLTHIEG----------LRSPLLLIHGMA 684 (741)
T ss_dssp HCTTTCSEEEEESCCCCGGGSBH-----HHHHHHHCCTGG--GHHHHHHHCSGGGGGG----------CCSCEEEEEETT
T ss_pred hCCCceEEEEEcCCCcchhhhcc-----ccchhhcCCccc--ChhhhhhcCHHHHHhh----------CCCCEEEEccCC
Confidence 99999999999999988753221 12122 244432 1233567799888876 688999999999
Q ss_pred CCCCCchHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeCCCCCCCCCchHHHHHHHHHHHHHHHHHhC
Q 004766 660 DDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLG 727 (732)
Q Consensus 660 D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 727 (732)
|.+||+.++.+++++|+.. ++++++++++++||++..... .+....+.+||.++|+
T Consensus 685 D~~v~~~~~~~~~~~l~~~----------~~~~~~~~~~~~~H~~~~~~~--~~~~~~i~~fl~~~l~ 740 (741)
T 2ecf_A 685 DDNVLFTNSTSLMSALQKR----------GQPFELMTYPGAKHGLSGADA--LHRYRVAEAFLGRCLK 740 (741)
T ss_dssp CSSSCTHHHHHHHHHHHHT----------TCCCEEEEETTCCSSCCHHHH--HHHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHHC----------CCceEEEEECCCCCCCCCCch--hHHHHHHHHHHHHhcC
Confidence 9999999999999999987 889999999999999875433 5677889999999986
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-47 Score=441.02 Aligned_cols=561 Identities=15% Similarity=0.128 Sum_probs=397.0
Q ss_pred CEEEEEEEcCCCCeeEEEEEeCCCCCceEEeCCCCcCCCCCEEEEeEEECCCCcEEEEEEeccCCceEEEEEEECCC---
Q 004766 91 NKYFYFHNTGLQPQSVLYVQDSLDAKAKVLLDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIED--- 167 (732)
Q Consensus 91 ~~~~~~~~~~~~~~~~l~~r~~~~~~~~~l~D~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~--- 167 (732)
++++|... ..+|+.+..+++...++.... .+..++|||||++|||+.+ .+|+++|+.+
T Consensus 93 ~~~~~~~~------~~i~~~d~~~~~~~~l~~~~~-------~~~~~~~SpdG~~la~~~~------~~i~v~~~~~~~~ 153 (706)
T 2z3z_A 93 GLVVLFTQ------GGLVGFDMLARKVTYLFDTNE-------ETASLDFSPVGDRVAYVRN------HNLYIARGGKLGE 153 (706)
T ss_dssp TEEEEEET------TEEEEEETTTTEEEEEECCTT-------CCTTCEECTTSSEEEEEET------TEEEEEECBCTTS
T ss_pred CeEEEEEC------CEEEEEECCCCceEEccCCcc-------cccCCcCCCCCCEEEEEEC------CeEEEEecCcccc
Confidence 56666532 336666655554444444321 1346899999999999742 3799999998
Q ss_pred --Cceeccccccee---------------eeeEEEEeCCcEEEEEEecCCCCCC----CCCCC-C---------cccCCc
Q 004766 168 --QIVEADALSWFK---------------FSSIAWTHDSKGFFYSRYPAPKEGK----DMDAG-T---------ETDSNL 216 (732)
Q Consensus 168 --g~~~~~~~~~~~---------------~~~~~WspDg~~l~y~~~~~~~~~~----~~~~~-~---------~~~~~~ 216 (732)
|+....+..... ...++|||||+.|+|.+.+...... ..... . .-....
T Consensus 154 ~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~ 233 (706)
T 2z3z_A 154 GMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSH 233 (706)
T ss_dssp CCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCC
T ss_pred cCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCC
Confidence 875432221111 2689999999999999854321000 00000 0 000113
Q ss_pred ccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCCCCcE
Q 004766 217 YHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFV 296 (732)
Q Consensus 217 ~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~ 296 (732)
..+|+++++.++... .+............++|||||++|++...+.......|+++|++++. ..+
T Consensus 234 ~~~l~~~d~~~~~~~--~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~-------------~~~ 298 (706)
T 2z3z_A 234 HVTVGIYHLATGKTV--YLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGR-------------FVR 298 (706)
T ss_dssp EEEEEEEETTTTEEE--ECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCC-------------EEE
T ss_pred eeEEEEEECCCCceE--eeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCc-------------eee
Confidence 357999999775422 22211122345678999999999998776554446789999998751 122
Q ss_pred Eeeecccc------eEEEEEe--cCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeE-EEEecC-CEEEEE
Q 004766 297 KLIDGFDA------QYEVIAN--DDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLES-ATAVNL-NQMIVS 366 (732)
Q Consensus 297 ~l~~~~~~------~~~~~s~--dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~-~~~~~~-~~l~~~ 366 (732)
.+...... ....|+| ||+ +++.+++++ ..+|+.++.++.. .+.+..+. ..+.. +.++++ +.|++.
T Consensus 299 ~~~~~~~~~~~~~~~~~~~sp~~dg~-~l~~~~~~g-~~~l~~~~~~~~~-~~~l~~~~--~~v~~~~~~spdg~~l~~~ 373 (706)
T 2z3z_A 299 TLFVETDKHYVEPLHPLTFLPGSNNQ-FIWQSRRDG-WNHLYLYDTTGRL-IRQVTKGE--WEVTNFAGFDPKGTRLYFE 373 (706)
T ss_dssp EEEEEECSSCCCCCSCCEECTTCSSE-EEEEECTTS-SCEEEEEETTSCE-EEECCCSS--SCEEEEEEECTTSSEEEEE
T ss_pred EEEEccCCCeECccCCceeecCCCCE-EEEEEccCC-ccEEEEEECCCCE-EEecCCCC--eEEEeeeEEcCCCCEEEEE
Confidence 22221111 1125899 887 555666543 5789999976543 45555443 33444 678875 467777
Q ss_pred EecCC--eeEEEEEeCCCCceeeecccccceeeEeecccCCcEEEEEEecCCCCceEEEEECCCCCCceEEEEeecCCCC
Q 004766 367 YLSDV--KYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTETPEMKIFRETIIPGF 444 (732)
Q Consensus 367 ~~~~g--~~~l~~~d~~~g~~~~~l~~~~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~~~~~~~l~~~~~~~~ 444 (732)
...++ ...|+.+++++|+. +.++ +...+..+++++|++.+++..++...|++++.+|+.+++ .+.+... . .+
T Consensus 374 ~~~~~~~~~~l~~~d~~~~~~-~~l~-~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~--~~~~~~~-~-~~ 447 (706)
T 2z3z_A 374 STEASPLERHFYCIDIKGGKT-KDLT-PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS--HTLLEAK-N-PD 447 (706)
T ss_dssp ESSSCTTCBEEEEEETTCCCC-EESC-CSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE--EEEEECC-----
T ss_pred ecCCCCceEEEEEEEcCCCCc-eecc-CCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe--Eeecccc-c-hh
Confidence 76655 45899999986664 5665 334466788999999999999999999999999998873 4444432 1 13
Q ss_pred CCCCc-eEEEEEEEccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCC-CCcChh---HHHHHHhcCcEEEEEcc
Q 004766 445 DRSEF-HVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVT-PSFSVS---RTILMRHLGAVFCIANI 519 (732)
Q Consensus 445 ~~~~~-~~~~~~~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~-~~~~~~---~~~~l~~~G~~v~~~~~ 519 (732)
....+ ..+.+.+++.||..+++++++.|+++..++++|+||++||+++.... ..|... +...|+++||+|+++|+
T Consensus 448 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~P~~~~~~~~~p~iv~~HGg~~~~~~~~~~~~~~~~~~~~la~~G~~v~~~d~ 527 (706)
T 2z3z_A 448 TGYAMPEIRTGTIMAADGQTPLYYKLTMPLHFDPAKKYPVIVYVYGGPHAQLVTKTWRSSVGGWDIYMAQKGYAVFTVDS 527 (706)
T ss_dssp ---CCCCEEEEEEECTTSSSEEEEEEECCTTCCTTSCEEEEEECCCCTTCCCCCSCC----CCHHHHHHHTTCEEEEECC
T ss_pred hhcCCCCcEEEEEEcCCCCEEEEEEEEeCCCCCCCCCccEEEEecCCCCceeeccccccCchHHHHHHHhCCcEEEEEec
Confidence 22223 56778888877735899999999987666789999999999876532 345543 45667669999999999
Q ss_pred cCCCCCchhHHhcccccCCccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCccccc
Q 004766 520 RGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDML 599 (732)
Q Consensus 520 rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~ 599 (732)
||+|++|..|........+...++|+.+++++|.+++.+|++|++|+|+|+||++++.++.++|++|+++|+.+|+.++.
T Consensus 528 rG~g~s~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~ 607 (706)
T 2z3z_A 528 RGSANRGAAFEQVIHRRLGQTEMADQMCGVDFLKSQSWVDADRIGVHGWSYGGFMTTNLMLTHGDVFKVGVAGGPVIDWN 607 (706)
T ss_dssp TTCSSSCHHHHHTTTTCTTHHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHHHHSTTTEEEEEEESCCCCGG
T ss_pred CCCcccchhHHHHHhhccCCccHHHHHHHHHHHHhCCCCCchheEEEEEChHHHHHHHHHHhCCCcEEEEEEcCCccchH
Confidence 99999999998887777778889999999999999988999999999999999999999999999999999999999875
Q ss_pred ccccCCCCCccccc-cCCCC-CHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHH
Q 004766 600 RYHKFTIGHAWVSD-FGCSE-EEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQY 677 (732)
Q Consensus 600 ~~~~~~~~~~~~~~-~g~p~-~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~ 677 (732)
.+.. .|... ++.|. +++ .+...+|...+.+ +.+|+||+||.+|.+||+.++.+++++|++
T Consensus 608 ~~~~-----~~~~~~~~~~~~~~~---~~~~~~~~~~~~~----------i~~P~lii~G~~D~~v~~~~~~~~~~~l~~ 669 (706)
T 2z3z_A 608 RYAI-----MYGERYFDAPQENPE---GYDAANLLKRAGD----------LKGRLMLIHGAIDPVVVWQHSLLFLDACVK 669 (706)
T ss_dssp GSBH-----HHHHHHHCCTTTCHH---HHHHHCGGGGGGG----------CCSEEEEEEETTCSSSCTHHHHHHHHHHHH
T ss_pred HHHh-----hhhhhhcCCcccChh---hhhhCCHhHhHHh----------CCCCEEEEeeCCCCCCCHHHHHHHHHHHHH
Confidence 4321 12222 35553 333 3567788888776 679999999999999999999999999998
Q ss_pred hhcCCCCCCCCCCCEEEEEeCCCCCCCCCchHHHHHHHHHHHHHHHHHh
Q 004766 678 VLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKML 726 (732)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l 726 (732)
+ +++++++++|++||++... . ..+.+..+.+||.++|
T Consensus 670 ~----------~~~~~~~~~~~~gH~~~~~-~-~~~~~~~i~~fl~~~l 706 (706)
T 2z3z_A 670 A----------RTYPDYYVYPSHEHNVMGP-D-RVHLYETITRYFTDHL 706 (706)
T ss_dssp H----------TCCCEEEEETTCCSSCCTT-H-HHHHHHHHHHHHHHHC
T ss_pred C----------CCCeEEEEeCCCCCCCCcc-c-HHHHHHHHHHHHHHhC
Confidence 8 8899999999999998765 2 3577888999999875
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-47 Score=445.68 Aligned_cols=583 Identities=13% Similarity=0.082 Sum_probs=396.7
Q ss_pred EeCCEEEEEEEcCC----CCeeEEEEEeCCCCCceEEeCCCCcCCCCCEEEEeEEECCCCcEEEEEEeccCCceEEEEEE
Q 004766 88 KRGNKYFYFHNTGL----QPQSVLYVQDSLDAKAKVLLDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLM 163 (732)
Q Consensus 88 ~~g~~~~~~~~~~~----~~~~~l~~r~~~~~~~~~l~D~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~ 163 (732)
++|.+++|.....+ .....||+.+..+++. +....+.. .+..++|||||++|||+.+ .+|+++
T Consensus 69 pDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~---~~~~~l~~----~~~~~~~SPDG~~la~~~~------~~i~~~ 135 (719)
T 1z68_A 69 PDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEF---VRGNELPR----PIQYLCWSPVGSKLAYVYQ------NNIYLK 135 (719)
T ss_dssp TTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEE---CCSSCCCS----SBCCEEECSSTTCEEEEET------TEEEEE
T ss_pred CCCCeEEEEecCceeEEeecceEEEEEECCCCcc---ccceecCc----ccccceECCCCCEEEEEEC------CeEEEE
Confidence 37778887754221 0124577777654432 11111211 1347999999999999952 289999
Q ss_pred ECCCCceecccccce-------------------eeeeEEEEeCCcEEEEEEecCCCCC-C---CCCCCC----------
Q 004766 164 RIEDQIVEADALSWF-------------------KFSSIAWTHDSKGFFYSRYPAPKEG-K---DMDAGT---------- 210 (732)
Q Consensus 164 dl~~g~~~~~~~~~~-------------------~~~~~~WspDg~~l~y~~~~~~~~~-~---~~~~~~---------- 210 (732)
|+.+|+....+..+. ....++|||||+.|+|.+.+..... . ......
T Consensus 136 ~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp 215 (719)
T 1z68_A 136 QRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYP 215 (719)
T ss_dssp SSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECC
T ss_pred eCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCC
Confidence 999887543321110 1147999999999999986542100 0 000000
Q ss_pred -cccCCcccEEEEEECCCCCCC-CeEEEe---cCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEe----CCCCCC
Q 004766 211 -ETDSNLYHEFYYHFLGTKQSE-DILCWK---DPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCD----LSALPE 281 (732)
Q Consensus 211 -~~~~~~~~~v~~~~lgt~~~~-~~~v~~---~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d----~~~~~~ 281 (732)
.-......+|+++++.++... .+.+.. ...+..+...++|||||+.++.... ......+|+++| +.++..
T Consensus 216 ~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~-~~~~~~~l~~~d~~~~~~~g~~ 294 (719)
T 1z68_A 216 KAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLK-RVQNVSVLSICDFREDWQTWDC 294 (719)
T ss_dssp BTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEE-SSTTEEEEEEEEECSSSSSEEC
T ss_pred CCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEec-cccCeEEEEEEcccCCCCCCce
Confidence 000012237888888765421 011100 0123456678999999875554333 333457899999 766431
Q ss_pred CcccccccCCCCCcE---Eeeecccc----eEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeE
Q 004766 282 GLEGFKKRDGLLPFV---KLIDGFDA----QYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLES 354 (732)
Q Consensus 282 ~~~~~~~~~~~~~~~---~l~~~~~~----~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~ 354 (732)
. .+ .. .-..++.. ....|+|||+.+++.+.......+|+.+|++++. .+.|..+. ..+..
T Consensus 295 ~--~~--------~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~~--~~v~~ 361 (719)
T 1z68_A 295 P--KT--------QEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQITSGK--WEAIN 361 (719)
T ss_dssp C--GG--------GEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-CEECSCSS--SCEEE
T ss_pred E--EE--------EecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-eEecccCc--eEEEE
Confidence 1 00 10 00011111 0346999999998865544446789999998876 56665443 33444
Q ss_pred EEEecCCEEEEEEec----CCeeEEEEEeCCCCc-eeeeccc----ccceeeEeecccCCcEEEEEEecCCCCceEEEEE
Q 004766 355 ATAVNLNQMIVSYLS----DVKYVLQIRDLKNGS-LLHQLPI----EIGSVNAISARREDSVVFISFTSFLIPGIVYQCN 425 (732)
Q Consensus 355 ~~~~~~~~l~~~~~~----~g~~~l~~~d~~~g~-~~~~l~~----~~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d 425 (732)
+.+.+++.+++.... .+..+|+.+++++|. ..+.++. +.+.+..+++++|++.+++.++++..| .++.+|
T Consensus 362 ~~~~d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p-~~~l~d 440 (719)
T 1z68_A 362 IFRVTQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIP-ISTLHD 440 (719)
T ss_dssp EEEECSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSC-EEEEEC
T ss_pred EEEEeCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCC-eEEEEE
Confidence 443454778888766 466789998886553 1244542 234455677889999999999998887 688999
Q ss_pred CCCCCCceEEEEeec-C-CCCCCCCc-eEEEEEEEccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccC-CCCcCh
Q 004766 426 LKTETPEMKIFRETI-I-PGFDRSEF-HVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISV-TPSFSV 501 (732)
Q Consensus 426 ~~~~~~~~~~l~~~~-~-~~~~~~~~-~~~~~~~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~-~~~~~~ 501 (732)
+.+++ ...++.... + ..++...+ .++.+.+++. + .+|+++++.|++....++.|+||++||+++... ...|..
T Consensus 441 ~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~l~~~~~~P~~~~~~~~~p~vl~~hG~~~~~~~~~~~~~ 517 (719)
T 1z68_A 441 GRTDQ-EIKILEENKELENALKNIQLPKEEIKKLEVD-E-ITLWYKMILPPQFDRSKKYPLLIQVYGGPCSQSVRSVFAV 517 (719)
T ss_dssp SSSCC-EEEEEECCHHHHHHTTSBCCCEEEEEEEEET-T-EEEEEEEEECTTCCSSSCEEEEEEECCCTTBCCCCCCCCC
T ss_pred CCCCC-EEEEeecchhhhhhhccccCCceEEEEEecC-C-eEEEEEEEeCCCCCCCCCccEEEEECCCCCcCcccccchh
Confidence 98885 233443211 1 12333344 6688888875 5 799999999998766678999999999988753 334543
Q ss_pred hHH-HHHHhcCcEEEEEcccCCCCCchhHHhcccccCCccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHh
Q 004766 502 SRT-ILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACIN 580 (732)
Q Consensus 502 ~~~-~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~ 580 (732)
.+. .+++++||+|+++|+||+|++|..|........+...++|+.+++++|++++.+|++||+|+|+|+||++++.++.
T Consensus 518 ~~~~~l~~~~G~~v~~~d~rG~g~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~ 597 (719)
T 1z68_A 518 NWISYLASKEGMVIALVDGRGTAFQGDKLLYAVYRKLGVYEVEDQITAVRKFIEMGFIDEKRIAIWGWSYGGYVSSLALA 597 (719)
T ss_dssp CHHHHHHHTTCCEEEEEECTTBSSSCHHHHGGGTTCTTHHHHHHHHHHHHHHHTTSCEEEEEEEEEEETHHHHHHHHHHT
T ss_pred hHHHHHHhcCCeEEEEEcCCCCCCCchhhHHHHhhccCcccHHHHHHHHHHHHhcCCCCCceEEEEEECHHHHHHHHHHH
Confidence 343 3444699999999999999999999988877777788999999999999998899999999999999999999999
Q ss_pred hCCCeeeEEEEcCCcccccccccCCCCCcccc-ccCCCCCHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEeeCC
Q 004766 581 QRPDLFGCALAHVGVMDMLRYHKFTIGHAWVS-DFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADH 659 (732)
Q Consensus 581 ~~p~~f~a~v~~~p~~d~~~~~~~~~~~~~~~-~~g~p~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~ 659 (732)
++|++|+++|+.+|+.|+..+.. .+.. .+|.|...+..+.+...+|+.++.+. ..+|+||+||.+
T Consensus 598 ~~p~~~~~~v~~~~~~~~~~~~~-----~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~---------~~~P~li~~G~~ 663 (719)
T 1z68_A 598 SGTGLFKCGIAVAPVSSWEYYAS-----VYTERFMGLPTKDDNLEHYKNSTVMARAEYF---------RNVDYLLIHGTA 663 (719)
T ss_dssp TSSSCCSEEEEESCCCCTTTSBH-----HHHHHHHCCSSTTTTHHHHHHTCSGGGGGGG---------TTSEEEEEEETT
T ss_pred hCCCceEEEEEcCCccChHHhcc-----ccchhhcCCcccccchhhhhhCCHhHHHhcC---------CCCcEEEEEeCC
Confidence 99999999999999998764321 1211 24555322233446778888888772 234999999999
Q ss_pred CCCCCchHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeCCCCCCCCCchHHHHHHHHHHHHHHHHHhC
Q 004766 660 DDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLG 727 (732)
Q Consensus 660 D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 727 (732)
|.+||+.++.+++++|+++ ++++++++++++||++. ... ..+....+.+||.++|+
T Consensus 664 D~~v~~~~~~~~~~~l~~~----------~~~~~~~~~~~~gH~~~-~~~-~~~~~~~i~~fl~~~l~ 719 (719)
T 1z68_A 664 DDNVHFQNSAQIAKALVNA----------QVDFQAMWYSDQNHGLS-GLS-TNHLYTHMTHFLKQCFS 719 (719)
T ss_dssp CSSSCTHHHHHHHHHHHHT----------TCCCEEEEETTCCTTCC-THH-HHHHHHHHHHHHHHHHC
T ss_pred CCCcCHHHHHHHHHHHHHC----------CCceEEEEECcCCCCCC-ccc-HHHHHHHHHHHHHHhhC
Confidence 9999999999999999987 88999999999999993 332 35777889999999885
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-47 Score=443.79 Aligned_cols=576 Identities=14% Similarity=0.119 Sum_probs=392.2
Q ss_pred eCCEEEEEEEcCCCC----eeEEEEEeCCCCCceEEeCCCCcCCCCCEEEEeEEECCCCcEEEEEEeccCCceEEEEEEE
Q 004766 89 RGNKYFYFHNTGLQP----QSVLYVQDSLDAKAKVLLDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMR 164 (732)
Q Consensus 89 ~g~~~~~~~~~~~~~----~~~l~~r~~~~~~~~~l~D~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~d 164 (732)
+|.+++|...+.... ...+|+.+..++..+.|..... +...+..++|||||++|||+.+ .+|+++|
T Consensus 71 Dg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~----~~~~~~~~~~SPdG~~la~~~~------~~i~~~~ 140 (723)
T 1xfd_A 71 DREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEV----SNAKLQYAGWGPKGQQLIFIFE------NNIYYCA 140 (723)
T ss_dssp TSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTC----CSCCCSBCCBCSSTTCEEEEET------TEEEEES
T ss_pred CCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCcc----ccccccccEECCCCCEEEEEEC------CeEEEEE
Confidence 677787776433221 1457777665555444332211 1112457899999999999974 2799999
Q ss_pred CCCCceeccccc---ce----------------eeeeEEEEeCCcEEEEEEecCCCCC-CC----------------C-C
Q 004766 165 IEDQIVEADALS---WF----------------KFSSIAWTHDSKGFFYSRYPAPKEG-KD----------------M-D 207 (732)
Q Consensus 165 l~~g~~~~~~~~---~~----------------~~~~~~WspDg~~l~y~~~~~~~~~-~~----------------~-~ 207 (732)
+++|+....+.. .. ....++|||||+.|+|.+.+..... .. + .
T Consensus 141 ~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (723)
T 1xfd_A 141 HVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPK 220 (723)
T ss_dssp SSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCB
T ss_pred CCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCC
Confidence 999875432221 10 1157999999999999986542110 00 0 0
Q ss_pred CCCcccCCcccEEEEEECCCCCCCCeEEEecCC----CCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCc
Q 004766 208 AGTETDSNLYHEFYYHFLGTKQSEDILCWKDPE----HPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGL 283 (732)
Q Consensus 208 ~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~----~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~ 283 (732)
.|. ......|+++++.++... ..+..+. .......++|||||++|++...+.. ....|+++|++++.
T Consensus 221 ~G~---~~~~~~l~~~d~~~~~~~--~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~-~~~~i~~~d~~~g~--- 291 (723)
T 1xfd_A 221 AGS---ENPSISLHVIGLNGPTHD--LEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQ-NVSILTLCDATTGV--- 291 (723)
T ss_dssp TTS---CCCEEEEEEEESSSSCCC--EECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTS-CEEEEEEEETTTCC---
T ss_pred CCC---CCCeeEEEEEECCCCcee--EEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCC-CeEEEEEEeCCCCc---
Confidence 000 011247999999876431 1222111 1345678999999998877665432 35789999998753
Q ss_pred ccccccCCCCCcEEeeec----ccc---eEEEEEecCCeEEEE-eCCCC---CCceEEEEe-CCCCC--CceEeccCCCC
Q 004766 284 EGFKKRDGLLPFVKLIDG----FDA---QYEVIANDDTVFTFL-TNKDA---PKYKIIRVD-LKEPN--DWFEVIPEAER 349 (732)
Q Consensus 284 ~~~~~~~~~~~~~~l~~~----~~~---~~~~~s~dg~~l~~~-s~~~~---~~~~l~~~d-~~~~~--~~~~l~~~~~~ 349 (732)
...+... +.. ....|+|||+.|++. +..++ ...+|+.+| ..++. ..+.+.... .
T Consensus 292 -----------~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~-~ 359 (723)
T 1xfd_A 292 -----------CTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGD-W 359 (723)
T ss_dssp -----------EEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSS-S
T ss_pred -----------ceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCC-e
Confidence 2222211 111 123699999999987 44433 245899999 44433 134454332 2
Q ss_pred CceeEEEEecC-CEEEEEEecC--CeeEEEEEeCCCCceeeeccc---ccceeeEeecccCCcEEEEEEecCCCCceEEE
Q 004766 350 DVLESATAVNL-NQMIVSYLSD--VKYVLQIRDLKNGSLLHQLPI---EIGSVNAISARREDSVVFISFTSFLIPGIVYQ 423 (732)
Q Consensus 350 ~~l~~~~~~~~-~~l~~~~~~~--g~~~l~~~d~~~g~~~~~l~~---~~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~ 423 (732)
.....+.|+++ +.|++....+ +..+|+.++++++...+.|+. +.+.+..+++++|++.+++.++++..|..++.
T Consensus 360 ~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~p~~~~~ 439 (723)
T 1xfd_A 360 DVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGPGVPMVTVH 439 (723)
T ss_dssp CEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECCSSSSCCEEEE
T ss_pred EEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEEccCCCCCeEEEE
Confidence 23333678875 4677777665 556788887764323345543 24456678899999999999999999987654
Q ss_pred EECCCCCCceEEEEeec-C-CCCCCCCc-eEEEEEEEccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccC-CCCc
Q 004766 424 CNLKTETPEMKIFRETI-I-PGFDRSEF-HVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISV-TPSF 499 (732)
Q Consensus 424 ~d~~~~~~~~~~l~~~~-~-~~~~~~~~-~~~~~~~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~-~~~~ 499 (732)
+..+++ +...+.... . ..++...+ ..+.+.+++.|| +|+++++.|+++...++.|+||++||+++... ...|
T Consensus 440 -~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~l~~~~~~P~~~~~~~~~p~vv~~HG~~~~~~~~~~~ 515 (723)
T 1xfd_A 440 -NTTDKK-KMFDLETNEHVKKAINDRQMPKVEYRDIEIDDY--NLPMQILKPATFTDTTHYPLLLVVDGTPGSQSVAEKF 515 (723)
T ss_dssp -ETTTCC-EEEEEECCHHHHHHHHTSCCCBCCBCCEEETTE--EECCBEEBCSSCCSSSCEEEEEECCCCTTCCCCCCCC
T ss_pred -ECCCCC-EEEEeccChhhhhhhhhccCCCceEEEEEcCCc--eEEEEEEeCCCCCCCCccCEEEEEcCCCCccccCccc
Confidence 765553 234443211 0 01222223 567788888887 89999999998766788999999999987642 2334
Q ss_pred Ch-hHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHH
Q 004766 500 SV-SRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGAC 578 (732)
Q Consensus 500 ~~-~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~ 578 (732)
.. ....+++++||+|+++|+||+|++|..|........+...++|+.+++++|.+++.+|++||+|+|+|+||++++.+
T Consensus 516 ~~~~~~~~l~~~G~~vv~~d~rG~g~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~ 595 (723)
T 1xfd_A 516 EVSWETVMVSSHGAVVVKCDGRGSGFQGTKLLHEVRRRLGLLEEKDQMEAVRTMLKEQYIDRTRVAVFGKDYGGYLSTYI 595 (723)
T ss_dssp CCSHHHHHHHTTCCEEECCCCTTCSSSHHHHHHTTTTCTTTHHHHHHHHHHHHHHSSSSEEEEEEEEEEETHHHHHHHHC
T ss_pred cccHHHHHhhcCCEEEEEECCCCCccccHHHHHHHHhccCcccHHHHHHHHHHHHhCCCcChhhEEEEEECHHHHHHHHH
Confidence 32 23456776899999999999999999998877666677889999999999999988999999999999999999999
Q ss_pred HhhC----CCeeeEEEEcCCcccccccccCCCCCcccc-ccCCCC-CHHHHHHHHhcCcccCCCCCCCCCCCCCCCC-Ce
Q 004766 579 INQR----PDLFGCALAHVGVMDMLRYHKFTIGHAWVS-DFGCSE-EEEEFYWLIKYSPLHNVRRPWEQNPDKPFQY-PS 651 (732)
Q Consensus 579 ~~~~----p~~f~a~v~~~p~~d~~~~~~~~~~~~~~~-~~g~p~-~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~-~p 651 (732)
+.++ |++|+++|+.+|+.++..+.. .+.. .+|.|. ..+ .+...+|...+.+ +. +|
T Consensus 596 a~~~~~~~p~~~~~~v~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~---~~~~~~~~~~~~~----------~~~~P 657 (723)
T 1xfd_A 596 LPAKGENQGQTFTCGSALSPITDFKLYAS-----AFSERYLGLHGLDNR---AYEMTKVAHRVSA----------LEEQQ 657 (723)
T ss_dssp CCCSSSTTCCCCSEEEEESCCCCTTSSBH-----HHHHHHHCCCSSCCS---STTTTCTHHHHTS----------CCSCE
T ss_pred HHhccccCCCeEEEEEEccCCcchHHhhh-----hccHhhcCCccCChh---HHHhcChhhHHhh----------cCCCC
Confidence 9999 999999999999988754321 1111 124432 111 1234566555655 66 79
Q ss_pred EEEEeeCCCCCCCchHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeCCCCCCCCCchHHHHHHHHHHHHHHHHHhCC
Q 004766 652 TLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLGA 728 (732)
Q Consensus 652 ~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~ 728 (732)
+||+||.+|.+||+.++.+++++|+++ +.++++++++++||++..... ..+....+.+||.++|++
T Consensus 658 ~lii~G~~D~~v~~~~~~~~~~~l~~~----------~~~~~~~~~~~~~H~~~~~~~-~~~~~~~i~~fl~~~l~~ 723 (723)
T 1xfd_A 658 FLIIHPTADEKIHFQHTAELITQLIRG----------KANYSLQIYPDESHYFTSSSL-KQHLYRSIINFFVECFRI 723 (723)
T ss_dssp EEEEEETTCSSSCHHHHHHHHHHHHHT----------TCCCEEEEETTCCSSCCCHHH-HHHHHHHHHHHHTTTTCC
T ss_pred EEEEEeCCCCCcCHhHHHHHHHHHHHC----------CCCeEEEEECCCCcccccCcc-hHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999987 889999999999999865443 357788899999988864
|
| >2jbw_A Dhpon-hydrolase, 2,6-dihydroxy-pseudo-oxynicotine hydrolase; alpha/beta hydrolase, META-cleavage pathway; 2.1A {Arthrobacter nicotinovorans} SCOP: c.69.1.41 | Back alignment and structure |
|---|
Probab=99.92 E-value=1.2e-24 Score=233.89 Aligned_cols=275 Identities=13% Similarity=0.095 Sum_probs=200.0
Q ss_pred EEEEEecCCCCceEEEEECCCCC---CceEEEEeecCCCCCCCCceEEEEEEEccCCCeeEEEEEEEcCCCCCCCCccEE
Q 004766 408 VFISFTSFLIPGIVYQCNLKTET---PEMKIFRETIIPGFDRSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCL 484 (732)
Q Consensus 408 l~~~~ss~~~p~~~y~~d~~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~s~dG~~~i~~~~~~p~~~~~~~~~P~v 484 (732)
+++..+++.+|.++|.++..+.. ...+.+.. .++.....++++++++ || .+|+++++.|++. ++.|+|
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~v~~~~-dg-~~i~~~l~~p~~~---~~~P~v 155 (386)
T 2jbw_A 85 LLMSAALCAQYAQFLWFDERRQKGQARKVELYQK----AAPLLSPPAERHELVV-DG-IPMPVYVRIPEGP---GPHPAV 155 (386)
T ss_dssp HHHHHHHHHHHHHTTCCSTHHHHHHHHHHHHHHH----HGGGSSSCEEEEEEEE-TT-EEEEEEEECCSSS---CCEEEE
T ss_pred HHHHHHHhhceeeeeccCCCCCHHHHHHHHHHHH----HHhhcCCCeEEEEEEe-CC-EEEEEEEEcCCCC---CCCCEE
Confidence 45566667778887776642110 00111110 1222335788899988 89 9999999999873 688999
Q ss_pred EEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCccHHHHHHHHHHHHHHcCCCCCCcEE
Q 004766 485 LYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSRKLC 564 (732)
Q Consensus 485 v~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~ 564 (732)
|++||+.+.. ...|.. ...|.++||+|+++|+||+|+. ...........+|+.+++++|.+++.++++||+
T Consensus 156 l~~hG~~~~~-~~~~~~--~~~l~~~G~~v~~~d~rG~G~s------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~ 226 (386)
T 2jbw_A 156 IMLGGLESTK-EESFQM--ENLVLDRGMATATFDGPGQGEM------FEYKRIAGDYEKYTSAVVDLLTKLEAIRNDAIG 226 (386)
T ss_dssp EEECCSSCCT-TTTHHH--HHHHHHTTCEEEEECCTTSGGG------TTTCCSCSCHHHHHHHHHHHHHHCTTEEEEEEE
T ss_pred EEeCCCCccH-HHHHHH--HHHHHhCCCEEEEECCCCCCCC------CCCCCCCccHHHHHHHHHHHHHhCCCcCcccEE
Confidence 9998876543 223332 3445559999999999998764 112233445567899999999999999999999
Q ss_pred EEecChhHHHHHHHHhhCCCeeeEEEEcCCcccccccccCCCC---CccccccCCCCCHHHH-HHHHhcCcccCCCCCCC
Q 004766 565 IEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIG---HAWVSDFGCSEEEEEF-YWLIKYSPLHNVRRPWE 640 (732)
Q Consensus 565 i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~---~~~~~~~g~p~~~~~~-~~~~~~sp~~~~~~~~~ 640 (732)
|+|+|+||++++.++.+ |++|+++|+. |+.++......... ..+...+|.+...+.+ ..+..++|..++.+
T Consensus 227 l~G~S~GG~la~~~a~~-~~~~~a~v~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~--- 301 (386)
T 2jbw_A 227 VLGRSLGGNYALKSAAC-EPRLAACISW-GGFSDLDYWDLETPLTKESWKYVSKVDTLEEARLHVHAALETRDVLSQ--- 301 (386)
T ss_dssp EEEETHHHHHHHHHHHH-CTTCCEEEEE-SCCSCSTTGGGSCHHHHHHHHHHTTCSSHHHHHHHHHHHTCCTTTGGG---
T ss_pred EEEEChHHHHHHHHHcC-CcceeEEEEe-ccCChHHHHHhccHHHHHHHHHHhCCCCHHHHHHHHHHhCChhhhhcc---
Confidence 99999999999999999 9999999999 99988655431100 0111235655444555 67788999888776
Q ss_pred CCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHH-HHhhcCCCCCCCCCCCEEEEEeCCCCCCCCCchHHHHHHHHHHH
Q 004766 641 QNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATM-QYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRY 719 (732)
Q Consensus 641 ~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~ 719 (732)
+.+|+||+||.+|. ||+.++.+++++| +. ++++++++++||++.. . ..+....+.
T Consensus 302 -------i~~P~Lii~G~~D~-v~~~~~~~l~~~l~~~-------------~~~~~~~~~~gH~~~~--~-~~~~~~~i~ 357 (386)
T 2jbw_A 302 -------IACPTYILHGVHDE-VPLSFVDTVLELVPAE-------------HLNLVVEKDGDHCCHN--L-GIRPRLEMA 357 (386)
T ss_dssp -------CCSCEEEEEETTSS-SCTHHHHHHHHHSCGG-------------GEEEEEETTCCGGGGG--G-TTHHHHHHH
T ss_pred -------cCCCEEEEECCCCC-CCHHHHHHHHHHhcCC-------------CcEEEEeCCCCcCCcc--c-hHHHHHHHH
Confidence 78999999999999 9999999999988 42 4799999999997532 2 246677899
Q ss_pred HHHHHHhCCC
Q 004766 720 GFMAKMLGAS 729 (732)
Q Consensus 720 ~fl~~~l~~~ 729 (732)
+||.++|+..
T Consensus 358 ~fl~~~l~~~ 367 (386)
T 2jbw_A 358 DWLYDVLVAG 367 (386)
T ss_dssp HHHHHHHTSS
T ss_pred HHHHHhcCCc
Confidence 9999999864
|
| >1vlq_A Acetyl xylan esterase; TM0077, structural genomics, JCSG, PR structure initiative, PSI, joint center for structural GENO hydrolase; 2.10A {Thermotoga maritima} SCOP: c.69.1.25 PDB: 3m81_A 3m83_A* 3m82_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.2e-23 Score=221.49 Aligned_cols=247 Identities=19% Similarity=0.205 Sum_probs=179.0
Q ss_pred CCCceEEEEEEEccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCC
Q 004766 446 RSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEY 525 (732)
Q Consensus 446 ~~~~~~~~~~~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~ 525 (732)
...+.++.+.+++.|| .+|+++++.|++. .++.|+||++||+.+... +......++. +||+|+++|+||.|++
T Consensus 63 ~~~~~~~~~~~~~~dg-~~i~~~~~~P~~~--~~~~p~vv~~HG~g~~~~---~~~~~~~l~~-~G~~v~~~d~rG~g~s 135 (337)
T 1vlq_A 63 LKTVEAYDVTFSGYRG-QRIKGWLLVPKLE--EEKLPCVVQYIGYNGGRG---FPHDWLFWPS-MGYICFVMDTRGQGSG 135 (337)
T ss_dssp CSSEEEEEEEEECGGG-CEEEEEEEEECCS--CSSEEEEEECCCTTCCCC---CGGGGCHHHH-TTCEEEEECCTTCCCS
T ss_pred CCCeEEEEEEEEcCCC-CEEEEEEEecCCC--CCCccEEEEEcCCCCCCC---Cchhhcchhh-CCCEEEEecCCCCCCc
Confidence 3456788999999999 9999999999863 467899999999876532 2222334444 9999999999999865
Q ss_pred chh-----------------HHhcccccCC----ccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCC
Q 004766 526 GEE-----------------WHKGGALAKK----QNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPD 584 (732)
Q Consensus 526 g~~-----------------~~~~~~~~~~----~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~ 584 (732)
+.. |...+..... ...++|+.+++++|.++..+|++||+++|+|+||++++.++.++|
T Consensus 136 ~~~~~~~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~la~~~a~~~p- 214 (337)
T 1vlq_A 136 WLKGDTPDYPEGPVDPQYPGFMTRGILDPRTYYYRRVFTDAVRAVEAAASFPQVDQERIVIAGGSQGGGIALAVSALSK- 214 (337)
T ss_dssp SSCCCCCBCCSSSBCCCCSSSTTTTTTCTTTCHHHHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHHHHCS-
T ss_pred ccCCCCcccccccCCCCCCcccccCCCCHHHhHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeCHHHHHHHHHHhcCC-
Confidence 432 0011111110 156899999999999998889999999999999999999999988
Q ss_pred eeeEEEEcCCcccccc-cccCCCCCccc--ccc--CCC-CCHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEeeC
Q 004766 585 LFGCALAHVGVMDMLR-YHKFTIGHAWV--SDF--GCS-EEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTAD 658 (732)
Q Consensus 585 ~f~a~v~~~p~~d~~~-~~~~~~~~~~~--~~~--g~p-~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~ 658 (732)
.++++|+.+|+++... .........|. .+| ..+ .....+..+..++|...+.+ +.+|+|+++|.
T Consensus 215 ~v~~~vl~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------i~~P~lii~G~ 284 (337)
T 1vlq_A 215 KAKALLCDVPFLCHFRRAVQLVDTHPYAEITNFLKTHRDKEEIVFRTLSYFDGVNFAAR----------AKIPALFSVGL 284 (337)
T ss_dssp SCCEEEEESCCSCCHHHHHHHCCCTTHHHHHHHHHHCTTCHHHHHHHHHTTCHHHHHTT----------CCSCEEEEEET
T ss_pred CccEEEECCCcccCHHHHHhcCCCcchHHHHHHHHhCchhHHHHHHhhhhccHHHHHHH----------cCCCEEEEeeC
Confidence 5889999998654322 11111111110 111 123 23344555667788877776 67999999999
Q ss_pred CCCCCCchHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeCCCCCCCCCchHHHHHHHHHHHHHHHHHhCC
Q 004766 659 HDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLGA 728 (732)
Q Consensus 659 ~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~ 728 (732)
+|.+||+.++.+++++|+ .++++++++++||++.. .+....+++||.++|+.
T Consensus 285 ~D~~~p~~~~~~~~~~l~-------------~~~~~~~~~~~gH~~~~-----~~~~~~~~~fl~~~l~~ 336 (337)
T 1vlq_A 285 MDNICPPSTVFAAYNYYA-------------GPKEIRIYPYNNHEGGG-----SFQAVEQVKFLKKLFEK 336 (337)
T ss_dssp TCSSSCHHHHHHHHHHCC-------------SSEEEEEETTCCTTTTH-----HHHHHHHHHHHHHHHC-
T ss_pred CCCCCCchhHHHHHHhcC-------------CCcEEEEcCCCCCCCcc-----hhhHHHHHHHHHHHHhc
Confidence 999999999999888765 25899999999999742 23457788999998863
|
| >3hxk_A Sugar hydrolase; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 3.20A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.3e-23 Score=211.52 Aligned_cols=237 Identities=13% Similarity=0.093 Sum_probs=172.0
Q ss_pred EEEEccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcc
Q 004766 454 VFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGG 533 (732)
Q Consensus 454 ~~~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~ 533 (732)
..+.+.+| .++.+++..|.....+++.|+||++||+............+...|+++||.|+++|+||.|+...
T Consensus 17 ~~~~~~~g-~~l~~~~~~~~~~~~~~~~p~vv~~HGgg~~~~~~~~~~~~~~~l~~~G~~v~~~d~~g~g~s~~------ 89 (276)
T 3hxk_A 17 STFSLNDT-AWVDFYQLQNPRQNENYTFPAIIICPGGGYQHISQRESDPLALAFLAQGYQVLLLNYTVMNKGTN------ 89 (276)
T ss_dssp EECCCBTT-BEEEEECCCC------CCBCEEEEECCSTTTSCCGGGSHHHHHHHHHTTCEEEEEECCCTTSCCC------
T ss_pred ccccCCCC-eEEEEEEeCCcccccCCCCCEEEEEcCCccccCCchhhHHHHHHHHHCCCEEEEecCccCCCcCC------
Confidence 34566788 88888766554432347889999999975333233333345566666999999999999876320
Q ss_pred cccCCccHHHHHHHHHHHHHHcC---CCCCCcEEEEecChhHHHHHHHHhh-CCCeeeEEEEcCCcccccccccCCCCCc
Q 004766 534 ALAKKQNCFDDFISASEYLISAG---YTQSRKLCIEGGSNGGLLVGACINQ-RPDLFGCALAHVGVMDMLRYHKFTIGHA 609 (732)
Q Consensus 534 ~~~~~~~~~~D~~~~~~~l~~~~---~~d~~~i~i~G~S~GG~l~~~~~~~-~p~~f~a~v~~~p~~d~~~~~~~~~~~~ 609 (732)
.......++|+.++++++.+.. .+|+++|+++|+|+||++++.++.+ .++.++++|+.+|+.++...... ...
T Consensus 90 -~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~v~~~p~~~~~~~~~~--~~~ 166 (276)
T 3hxk_A 90 -YNFLSQNLEEVQAVFSLIHQNHKEWQINPEQVFLLGCSAGGHLAAWYGNSEQIHRPKGVILCYPVTSFTFGWPS--DLS 166 (276)
T ss_dssp -SCTHHHHHHHHHHHHHHHHHHTTTTTBCTTCCEEEEEHHHHHHHHHHSSSCSTTCCSEEEEEEECCBTTSSCSS--SSS
T ss_pred -CCcCchHHHHHHHHHHHHHHhHHHcCCCcceEEEEEeCHHHHHHHHHHhhccCCCccEEEEecCcccHHhhCCc--chh
Confidence 0111246789999999998864 2688999999999999999999988 78999999999999886544221 111
Q ss_pred cccccCCCCCHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhcCCCCCCCCC
Q 004766 610 WVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQT 689 (732)
Q Consensus 610 ~~~~~g~p~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~ 689 (732)
+ ..+- +... ..++|...+.+ +.+|+|++||.+|..||+.++.+++++|++. +
T Consensus 167 ~-~~~~-~~~~------~~~~~~~~~~~----------~~~P~lii~G~~D~~vp~~~~~~~~~~l~~~----------~ 218 (276)
T 3hxk_A 167 H-FNFE-IENI------SEYNISEKVTS----------STPPTFIWHTADDEGVPIYNSLKYCDRLSKH----------Q 218 (276)
T ss_dssp S-SCCC-CSCC------GGGBTTTTCCT----------TSCCEEEEEETTCSSSCTHHHHHHHHHHHTT----------T
T ss_pred h-hhcC-chhh------hhCChhhcccc----------CCCCEEEEecCCCceeChHHHHHHHHHHHHc----------C
Confidence 1 1111 1111 34567766665 7899999999999999999999999999987 8
Q ss_pred CCEEEEEeCCCCCCCCCchH-----------HHHHHHHHHHHHHHHHhCC
Q 004766 690 NPIIGRIERKAGHGVGLPTQ-----------KMIDEAADRYGFMAKMLGA 728 (732)
Q Consensus 690 ~~~~~~~~~~~gH~~~~~~~-----------~~~~~~~~~~~fl~~~l~~ 728 (732)
.++++++++++||++..... ...+....+.+||.++...
T Consensus 219 ~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~ 268 (276)
T 3hxk_A 219 VPFEAHFFESGPHGVSLANRTTAPSDAYCLPSVHRWVSWASDWLERQIKN 268 (276)
T ss_dssp CCEEEEEESCCCTTCTTCSTTSCSSSTTCCHHHHTHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCccccCccccccccccCchHHHHHHHHHHHHHhCccc
Confidence 89999999999998763211 3356777888999988744
|
| >3ga7_A Acetyl esterase; phosphoserine, IDP00896, hydrolase, serine structural genomics, center for structural genomics of INFE diseases, csgid; HET: SEP MSE; 1.55A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.2e-22 Score=212.85 Aligned_cols=240 Identities=17% Similarity=0.110 Sum_probs=171.7
Q ss_pred CceEEEEEEEccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHh-cCcEEEEEcccCCCCCc
Q 004766 448 EFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRH-LGAVFCIANIRGGGEYG 526 (732)
Q Consensus 448 ~~~~~~~~~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~-~G~~v~~~~~rG~g~~g 526 (732)
.+..+.+++++.|| +|++.+++|++. ..|+||++|||............+...|+. +||+|+.+|+|++++.
T Consensus 60 ~~~~~~~~~~~~~g--~i~~~~~~p~~~----~~p~vv~~HGgg~~~g~~~~~~~~~~~la~~~g~~V~~~dyr~~p~~- 132 (326)
T 3ga7_A 60 SMTTRTCAVPTPYG--DVTTRLYSPQPT----SQATLYYLHGGGFILGNLDTHDRIMRLLARYTGCTVIGIDYSLSPQA- 132 (326)
T ss_dssp CCEEEEEEECCTTS--CEEEEEEESSSS----CSCEEEEECCSTTTSCCTTTTHHHHHHHHHHHCSEEEEECCCCTTTS-
T ss_pred CcceEEEEeecCCC--CeEEEEEeCCCC----CCcEEEEECCCCcccCChhhhHHHHHHHHHHcCCEEEEeeCCCCCCC-
Confidence 45568899999888 799999999863 349999999987433333333344555664 6999999999998764
Q ss_pred hhHHhcccccCCccHHHHHHHHHHHHHHcC---CCCCCcEEEEecChhHHHHHHHHhhCCCe------eeEEEEcCCccc
Q 004766 527 EEWHKGGALAKKQNCFDDFISASEYLISAG---YTQSRKLCIEGGSNGGLLVGACINQRPDL------FGCALAHVGVMD 597 (732)
Q Consensus 527 ~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~---~~d~~~i~i~G~S~GG~l~~~~~~~~p~~------f~a~v~~~p~~d 597 (732)
.....++|+.++++|+.++. .+|++||+|+|+|+||++++.++.++|+. ++++|+.+|+.+
T Consensus 133 ----------~~~~~~~D~~~a~~~l~~~~~~~~~d~~ri~l~G~S~GG~la~~~a~~~~~~~~~~~~~~~~vl~~~~~~ 202 (326)
T 3ga7_A 133 ----------RYPQAIEETVAVCSYFSQHADEYSLNVEKIGFAGDSAGAMLALASALWLRDKHIRCGNVIAILLWYGLYG 202 (326)
T ss_dssp ----------CTTHHHHHHHHHHHHHHHTTTTTTCCCSEEEEEEETHHHHHHHHHHHHHHHHTCCSSEEEEEEEESCCCS
T ss_pred ----------CCCcHHHHHHHHHHHHHHhHHHhCCChhheEEEEeCHHHHHHHHHHHHHHhcCCCccCceEEEEeccccc
Confidence 23456799999999999873 46899999999999999999999887764 899999999887
Q ss_pred ccccccCCCCCccccccCC---CCCHHHHHH-HHh--------cCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCc
Q 004766 598 MLRYHKFTIGHAWVSDFGC---SEEEEEFYW-LIK--------YSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVP 665 (732)
Q Consensus 598 ~~~~~~~~~~~~~~~~~g~---p~~~~~~~~-~~~--------~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~ 665 (732)
....... ..++. ....+.... +.. .+|+...... ......||+||+||+.|..|
T Consensus 203 ~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~P~li~~G~~D~~~-- 268 (326)
T 3ga7_A 203 LQDSVSR-------RLFGGAWDGLTREDLDMYEKAYLRNDEDRESPWYCLFNN-----DLTRDVPPCFIASAEFDPLI-- 268 (326)
T ss_dssp CSCCHHH-------HHCCCTTTTCCHHHHHHHHHHHCSSGGGGGCTTTSGGGS-----CCSSCCCCEEEEEETTCTTH--
T ss_pred cCCChhH-------hhhcCCCCCCCHHHHHHHHHHhCCCCCccCCcccCCCcc-----hhhcCCCCEEEEecCcCcCH--
Confidence 6432110 01110 011111111 111 1333221100 00126789999999999998
Q ss_pred hHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeCCCCCCCCCc---hHHHHHHHHHHHHHHHHHhCC
Q 004766 666 LHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLP---TQKMIDEAADRYGFMAKMLGA 728 (732)
Q Consensus 666 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~---~~~~~~~~~~~~~fl~~~l~~ 728 (732)
.++.+++++|+++ |+++++++|++++|++... ..+..+..+.+.+||.++|+.
T Consensus 269 ~~~~~~~~~l~~~----------g~~~~~~~~~g~~H~f~~~~~~~~~~~~~~~~~~~fl~~~l~~ 324 (326)
T 3ga7_A 269 DDSRLLHQTLQAH----------QQPCEYKMYPGTLHAFLHYSRMMTIADDALQDGARFFMARMKT 324 (326)
T ss_dssp HHHHHHHHHHHHT----------TCCEEEEEETTCCTTGGGGTTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHC----------CCcEEEEEeCCCccchhhhcCccHHHHHHHHHHHHHHHHHhcc
Confidence 4899999999998 9999999999999998432 123357788899999998864
|
| >3bxp_A Putative lipase/esterase; putative carboxylesterase, structural genomics, joint center structural genomics, JCSG; HET: EPE; 1.70A {Lactobacillus plantarum WCFS1} PDB: 3d3n_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.3e-22 Score=207.13 Aligned_cols=236 Identities=11% Similarity=0.048 Sum_probs=165.4
Q ss_pred eEEEEEEEccCCCeeEEEEEEEcCC---CCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCc
Q 004766 450 HVHQVFVPSKDGSTKIPMFIVSKKN---IKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYG 526 (732)
Q Consensus 450 ~~~~~~~~s~dG~~~i~~~~~~p~~---~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g 526 (732)
..+.+.+. .+| ..+++.++.|+. +...++.|+||++|||............+...|+++||.|+++|+||+|+.+
T Consensus 3 ~~~~~~~~-~~~-~~~~~~~~~p~~~~~~~~~~~~p~vv~~HGgg~~~~~~~~~~~~~~~l~~~G~~v~~~d~~g~g~~~ 80 (277)
T 3bxp_A 3 QVEQRTLN-TAA-HPFQITAYWLDQISDFETAVDYPIMIICPGGGFTYHSGREEAPIATRMMAAGMHTVVLNYQLIVGDQ 80 (277)
T ss_dssp EEEEEEEC-STT-CCEEEEEEEECCCCSSSCCCCEEEEEEECCSTTTSCCCTTHHHHHHHHHHTTCEEEEEECCCSTTTC
T ss_pred ceEEEEec-cCC-CcceEEEEeCCcccccccCCCccEEEEECCCccccCCCccchHHHHHHHHCCCEEEEEecccCCCCC
Confidence 45566664 477 799999999983 2235788999999997433222222223445565699999999999977322
Q ss_pred hhHHhcccccCCccHHHHHHHHHHHHHHcC---CCCCCcEEEEecChhHHHHHHHHhhC--------------CCeeeEE
Q 004766 527 EEWHKGGALAKKQNCFDDFISASEYLISAG---YTQSRKLCIEGGSNGGLLVGACINQR--------------PDLFGCA 589 (732)
Q Consensus 527 ~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~---~~d~~~i~i~G~S~GG~l~~~~~~~~--------------p~~f~a~ 589 (732)
. .....++|+.+++++|.+.. -++++||+++|+|+||++++.++.++ |..++++
T Consensus 81 ~---------~~~~~~~d~~~~~~~l~~~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 151 (277)
T 3bxp_A 81 S---------VYPWALQQLGATIDWITTQASAHHVDCQRIILAGFSAGGHVVATYNGVATQPELRTRYHLDHYQGQHAAI 151 (277)
T ss_dssp C---------CTTHHHHHHHHHHHHHHHHHHHHTEEEEEEEEEEETHHHHHHHHHHHHTTSHHHHHHTTCTTCCCCCSEE
T ss_pred c---------cCchHHHHHHHHHHHHHhhhhhcCCChhheEEEEeCHHHHHHHHHHhhccCcccccccCcccccCCcCEE
Confidence 2 22356789999999998762 25788999999999999999999885 7789999
Q ss_pred EEcCCcccccccccCCCCCccccccCCCCCHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHH
Q 004766 590 LAHVGVMDMLRYHKFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSL 669 (732)
Q Consensus 590 v~~~p~~d~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~ 669 (732)
|+.+|+.++..... ....+...+- ..+...+|...+.+ +.+|+||+||.+|..||+.++.
T Consensus 152 v~~~p~~~~~~~~~--~~~~~~~~~~--------~~~~~~~~~~~~~~----------~~~P~lii~G~~D~~vp~~~~~ 211 (277)
T 3bxp_A 152 ILGYPVIDLTAGFP--TTSAARNQIT--------TDARLWAAQRLVTP----------ASKPAFVWQTATDESVPPINSL 211 (277)
T ss_dssp EEESCCCBTTSSSS--SSHHHHHHHC--------SCGGGSBGGGGCCT----------TSCCEEEEECTTCCCSCTHHHH
T ss_pred EEeCCcccCCCCCC--Cccccchhcc--------chhhhcCHhhcccc----------CCCCEEEEeeCCCCccChHHHH
Confidence 99999887542211 0000000000 01234567666655 6789999999999999999999
Q ss_pred HHHHHHHHhhcCCCCCCCCCCCEEEEEeCCCCCCCCCch-------------HHHHHHHHHHHHHHHHHh
Q 004766 670 KLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPT-------------QKMIDEAADRYGFMAKML 726 (732)
Q Consensus 670 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~-------------~~~~~~~~~~~~fl~~~l 726 (732)
+++++|++. +.++++++++++||++.... ....+....+.+||.++.
T Consensus 212 ~~~~~l~~~----------~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~ 271 (277)
T 3bxp_A 212 KYVQAMLQH----------QVATAYHLFGSGIHGLALANHVTQKPGKDKYLNDQAAIWPQLALRWLQEQG 271 (277)
T ss_dssp HHHHHHHHT----------TCCEEEEECCCC----------------CHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHC----------CCeEEEEEeCCCCcccccccccccCccccccccchHHHHHHHHHHHHHhcc
Confidence 999999987 88999999999999765322 223567788899998763
|
| >2o7r_A CXE carboxylesterase; alpha/beta hydrolase; 1.40A {Actinidia eriantha} PDB: 2o7v_A | Back alignment and structure |
|---|
Probab=99.90 E-value=8.3e-23 Score=215.26 Aligned_cols=285 Identities=12% Similarity=0.041 Sum_probs=177.1
Q ss_pred cCCcEEEEEEecCCCCceEEEEECCCCCCceEE-EEeecCC-CCCC---CCceEEEEEEEccCCCeeEEEEEEEcCCC-C
Q 004766 403 REDSVVFISFTSFLIPGIVYQCNLKTETPEMKI-FRETIIP-GFDR---SEFHVHQVFVPSKDGSTKIPMFIVSKKNI-K 476 (732)
Q Consensus 403 ~d~~~l~~~~ss~~~p~~~y~~d~~~~~~~~~~-l~~~~~~-~~~~---~~~~~~~~~~~s~dG~~~i~~~~~~p~~~-~ 476 (732)
++.+++++.++++..|...++++.. |+ ... +..+..+ ..++ ..+..+.+.+.+ | ..+++.++.|++. .
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~-g~--~~r~~~~~~~~~~~~~~~~~~v~~~~v~~~~--~-~~~~~~~~~P~~~~~ 78 (338)
T 2o7r_A 5 HLETTGSSDPNTNLLKYLPIVLNPD-RT--ITRPIQIPSTAASPDPTSSSPVLTKDLALNP--L-HNTFVRLFLPRHALY 78 (338)
T ss_dssp -------------CTTTCSCEECTT-SC--EECCSCCCBCCCCCCTTSSCSEEEEEEEEET--T-TTEEEEEEEEGGGGG
T ss_pred CCCCceeeccCcccccccceEECCC-Ce--EEecCCCCCCCCCCCcccCCCEEEEEEEecC--C-CCeEEEEEeCCCCCc
Confidence 4556788888888888777777653 42 222 2222222 2333 356778888875 5 6788888999864 3
Q ss_pred CCCCccEEEEEcCCCCccCCCC---cChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCccHHHHHHHHHHHHH
Q 004766 477 LDGSHPCLLYGYGGFNISVTPS---FSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLI 553 (732)
Q Consensus 477 ~~~~~P~vv~~hG~~~~~~~~~---~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~ 553 (732)
.+++.|+||++|||........ |......+..++||+|+++|+||+++. .....++|+.++++||.
T Consensus 79 ~~~~~p~vv~~HGgg~~~~~~~~~~~~~~~~~la~~~g~~vv~~d~rg~~~~-----------~~~~~~~d~~~~~~~l~ 147 (338)
T 2o7r_A 79 NSAKLPLVVYFHGGGFILFSAASTIFHDFCCEMAVHAGVVIASVDYRLAPEH-----------RLPAAYDDAMEALQWIK 147 (338)
T ss_dssp SSCCEEEEEEECCSTTTSCCTTBHHHHHHHHHHHHHHTCEEEEEECCCTTTT-----------CTTHHHHHHHHHHHHHH
T ss_pred CCCCceEEEEEcCCcCcCCCCCchhHHHHHHHHHHHCCcEEEEecCCCCCCC-----------CCchHHHHHHHHHHHHH
Confidence 4578999999999864433322 443334444258999999999998763 23457899999999999
Q ss_pred HcC------CCCCCcEEEEecChhHHHHHHHHhhCCC--------eeeEEEEcCCcccccccccCCCCCccccccCCC-C
Q 004766 554 SAG------YTQSRKLCIEGGSNGGLLVGACINQRPD--------LFGCALAHVGVMDMLRYHKFTIGHAWVSDFGCS-E 618 (732)
Q Consensus 554 ~~~------~~d~~~i~i~G~S~GG~l~~~~~~~~p~--------~f~a~v~~~p~~d~~~~~~~~~~~~~~~~~g~p-~ 618 (732)
++. .+|++|++|+|+|+||++++.++.++|+ +++++|+.+|+.+....... .......+ .
T Consensus 148 ~~~~~~~~~~~d~~~v~l~G~S~GG~ia~~~a~~~~~~~~~~~~~~v~~~vl~~p~~~~~~~~~~-----~~~~~~~~~~ 222 (338)
T 2o7r_A 148 DSRDEWLTNFADFSNCFIMGESAGGNIAYHAGLRAAAVADELLPLKIKGLVLDEPGFGGSKRTGS-----ELRLANDSRL 222 (338)
T ss_dssp TCCCHHHHHHEEEEEEEEEEETHHHHHHHHHHHHHHTTHHHHTTCCEEEEEEESCCCCCSSCCHH-----HHHTTTCSSS
T ss_pred hCCcchhhccCCcceEEEEEeCccHHHHHHHHHHhccccccCCCCceeEEEEECCccCCCcCChh-----hhccCCCccc
Confidence 863 3677999999999999999999999888 89999999998876432110 00000000 0
Q ss_pred CHHHHHHH-Hhc------------CcccCC------CCCCCCCCCCCCCCC-eEEEEeeCCCCCCCchHHHHHHHHHHHh
Q 004766 619 EEEEFYWL-IKY------------SPLHNV------RRPWEQNPDKPFQYP-STLLLTADHDDRVVPLHSLKLLATMQYV 678 (732)
Q Consensus 619 ~~~~~~~~-~~~------------sp~~~~------~~~~~~~~~~~~~~~-p~Li~~g~~D~~v~~~~~~~~~~~l~~~ 678 (732)
.....+.+ ..+ +|+... +.. ...| |+||++|++|..|+ ++.+++++|+++
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--------~~~~~P~Lvi~G~~D~~~~--~~~~~~~~l~~~ 292 (338)
T 2o7r_A 223 PTFVLDLIWELSLPMGADRDHEYCNPTAESEPLYSFDKI--------RSLGWRVMVVGCHGDPMID--RQMELAERLEKK 292 (338)
T ss_dssp CHHHHHHHHHHHSCTTCCTTSTTTCCC----CCTHHHHH--------HHHTCEEEEEEETTSTTHH--HHHHHHHHHHHT
T ss_pred CHHHHHHHHHHhCCCCCCCCCcccCCCCCCcccccHhhh--------cCCCCCEEEEECCCCcchH--HHHHHHHHHHHC
Confidence 00111111 111 111110 000 0124 99999999999987 678899999987
Q ss_pred hcCCCCCCCCCCCEEEEEeCCCCCCCCC-chHHHHHHHHHHHHHHHHHhCCC
Q 004766 679 LCTSLENSPQTNPIIGRIERKAGHGVGL-PTQKMIDEAADRYGFMAKMLGAS 729 (732)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~~~~~gH~~~~-~~~~~~~~~~~~~~fl~~~l~~~ 729 (732)
+.++++++++++||++.. ......+..+.+.+||.++++..
T Consensus 293 ----------~~~~~~~~~~g~gH~~~~~~~~~~~~~~~~i~~Fl~~~~~~~ 334 (338)
T 2o7r_A 293 ----------GVDVVAQFDVGGYHAVKLEDPEKAKQFFVILKKFVVDSCTTK 334 (338)
T ss_dssp ----------TCEEEEEEESSCCTTGGGTCHHHHHHHHHHHHHHHC------
T ss_pred ----------CCcEEEEEECCCceEEeccChHHHHHHHHHHHHHHHhhcccc
Confidence 889999999999998753 22233567788999999887643
|
| >4ao6_A Esterase; hydrolase, thermo label; 1.60A {Unidentified} PDB: 4ao7_A 4ao8_A | Back alignment and structure |
|---|
Probab=99.90 E-value=9.4e-23 Score=205.96 Aligned_cols=216 Identities=16% Similarity=0.099 Sum_probs=141.8
Q ss_pred eEEEEEEEccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhH
Q 004766 450 HVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEW 529 (732)
Q Consensus 450 ~~~~~~~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~ 529 (732)
..|+.+....|| .+||++++.|++. ++.|+||++||+.+....+.+.. ..++|+++||+|+.+|+||+|+.+...
T Consensus 29 ~~e~~~~~~~dG-~~i~g~l~~P~~~---~~~p~Vl~~HG~g~~~~~~~~~~-~a~~la~~Gy~Vl~~D~rG~G~s~~~~ 103 (259)
T 4ao6_A 29 VQERGFSLEVDG-RTVPGVYWSPAEG---SSDRLVLLGHGGTTHKKVEYIEQ-VAKLLVGRGISAMAIDGPGHGERASVQ 103 (259)
T ss_dssp EEEEEEEEEETT-EEEEEEEEEESSS---CCSEEEEEEC--------CHHHH-HHHHHHHTTEEEEEECCCC--------
T ss_pred ceEEEEEEeeCC-eEEEEEEEeCCCC---CCCCEEEEeCCCcccccchHHHH-HHHHHHHCCCeEEeeccCCCCCCCCcc
Confidence 445544456799 9999999999863 57899999999987654444443 456677799999999999998765543
Q ss_pred HhcccccC---------------CccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCC
Q 004766 530 HKGGALAK---------------KQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVG 594 (732)
Q Consensus 530 ~~~~~~~~---------------~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p 594 (732)
........ ....+.|..+++++|... +|++||+++|+|+||+++..++...|+ ++|+|+..+
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~l~~l~~~--~d~~rv~~~G~S~GG~~a~~~a~~~pr-i~Aav~~~~ 180 (259)
T 4ao6_A 104 AGREPTDVVGLDAFPRMWHEGGGTAAVIADWAAALDFIEAE--EGPRPTGWWGLSMGTMMGLPVTASDKR-IKVALLGLM 180 (259)
T ss_dssp -----CCGGGSTTHHHHHHHTTHHHHHHHHHHHHHHHHHHH--HCCCCEEEEECTHHHHHHHHHHHHCTT-EEEEEEESC
T ss_pred cccccchhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHhhhc--cCCceEEEEeechhHHHHHHHHhcCCc-eEEEEEecc
Confidence 22111110 112356788888888754 789999999999999999999999885 555554433
Q ss_pred cccccccccCCCCCccccccCCCCCHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHH
Q 004766 595 VMDMLRYHKFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLAT 674 (732)
Q Consensus 595 ~~d~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~ 674 (732)
..+.. .. .++...+.+ +..|+||+||.+|.+||+.++.+++++
T Consensus 181 ~~~~~-------------------~~--------~~~~~~a~~----------i~~P~Li~hG~~D~~vp~~~~~~l~~a 223 (259)
T 4ao6_A 181 GVEGV-------------------NG--------EDLVRLAPQ----------VTCPVRYLLQWDDELVSLQSGLELFGK 223 (259)
T ss_dssp CTTST-------------------TH--------HHHHHHGGG----------CCSCEEEEEETTCSSSCHHHHHHHHHH
T ss_pred ccccc-------------------cc--------cchhhhhcc----------CCCCEEEEecCCCCCCCHHHHHHHHHH
Confidence 22110 00 012233333 788999999999999999999999988
Q ss_pred HHHhhcCCCCCCCCCCCEEEEEeCCCCCCCCCchHHHHHHHHHHHHHHHHHhC
Q 004766 675 MQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLG 727 (732)
Q Consensus 675 l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 727 (732)
|. ..+..++++++ +|... +. .+..+.+++||.++|.
T Consensus 224 l~------------~~~k~l~~~~G-~H~~~-p~---~e~~~~~~~fl~~hLk 259 (259)
T 4ao6_A 224 LG------------TKQKTLHVNPG-KHSAV-PT---WEMFAGTVDYLDQRLK 259 (259)
T ss_dssp CC------------CSSEEEEEESS-CTTCC-CH---HHHTHHHHHHHHHHCC
T ss_pred hC------------CCCeEEEEeCC-CCCCc-CH---HHHHHHHHHHHHHhcC
Confidence 75 44568889987 56432 22 3456678999999984
|
| >3f67_A Putative dienelactone hydrolase; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; 1.74A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.5e-22 Score=201.73 Aligned_cols=225 Identities=15% Similarity=0.137 Sum_probs=165.8
Q ss_pred CceEEEEEEEccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCch
Q 004766 448 EFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGE 527 (732)
Q Consensus 448 ~~~~~~~~~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~ 527 (732)
.+..+.+.+++ +| .+++++++.|++. .++.|+||++||..+.. ..+ ..+...|+++||.|+++|+||.|+...
T Consensus 3 ~~~~~~~~~~~-~~-~~~~~~~~~p~~~--~~~~p~vv~~HG~~g~~--~~~-~~~~~~l~~~G~~v~~~d~~g~g~~~~ 75 (241)
T 3f67_A 3 AIIAGETSIPS-QG-ENMPAYHARPKNA--DGPLPIVIVVQEIFGVH--EHI-RDLCRRLAQEGYLAIAPELYFRQGDPN 75 (241)
T ss_dssp CEEEEEEEEEE-TT-EEEEEEEEEETTC--CSCEEEEEEECCTTCSC--HHH-HHHHHHHHHTTCEEEEECTTTTTCCGG
T ss_pred cceeeeEEEec-CC-cceEEEEecCCCC--CCCCCEEEEEcCcCccC--HHH-HHHHHHHHHCCcEEEEecccccCCCCC
Confidence 45677888888 88 9999999999863 36789999999976653 222 234555666999999999999876544
Q ss_pred hHHhcc-------cccCCccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCcccccc
Q 004766 528 EWHKGG-------ALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLR 600 (732)
Q Consensus 528 ~~~~~~-------~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~ 600 (732)
.+.... .........+|+.+++++|.+++ +|+++|+++|+|+||.+++.++.++|+ ++++|+..|....
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~-~d~~~i~l~G~S~Gg~~a~~~a~~~~~-~~~~v~~~~~~~~-- 151 (241)
T 3f67_A 76 EYHDIPTLFKELVSKVPDAQVLADLDHVASWAARHG-GDAHRLLITGFCWGGRITWLYAAHNPQ-LKAAVAWYGKLVG-- 151 (241)
T ss_dssp GCCSHHHHHHHTGGGSCHHHHHHHHHHHHHHHHTTT-EEEEEEEEEEETHHHHHHHHHHTTCTT-CCEEEEESCCCSC--
T ss_pred chhhHHHHHHHhhhcCCchhhHHHHHHHHHHHHhcc-CCCCeEEEEEEcccHHHHHHHHhhCcC-cceEEEEeccccC--
Confidence 322111 11112345789999999999887 888999999999999999999999998 6666665553211
Q ss_pred cccCCCCCccccccCCCCCHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhc
Q 004766 601 YHKFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLC 680 (732)
Q Consensus 601 ~~~~~~~~~~~~~~g~p~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~ 680 (732)
.. ..+ ...+|...+.+ +.+|+|+++|.+|..||+.++.+++++|++.
T Consensus 152 -----~~----~~~------------~~~~~~~~~~~----------~~~P~l~~~g~~D~~~~~~~~~~~~~~l~~~-- 198 (241)
T 3f67_A 152 -----EK----SLN------------SPKHPVDIAVD----------LNAPVLGLYGAKDASIPQDTVETMRQALRAA-- 198 (241)
T ss_dssp -----CC----CSS------------SCCCHHHHGGG----------CCSCEEEEEETTCTTSCHHHHHHHHHHHHHT--
T ss_pred -----CC----ccC------------CccCHHHhhhh----------cCCCEEEEEecCCCCCCHHHHHHHHHHHHHc--
Confidence 00 000 11234444444 6789999999999999999999999999987
Q ss_pred CCCCCCCCCCCEEEEEeCCCCCCCCCc------hHHHHHHHHHHHHHHHH
Q 004766 681 TSLENSPQTNPIIGRIERKAGHGVGLP------TQKMIDEAADRYGFMAK 724 (732)
Q Consensus 681 ~~~~~~~~~~~~~~~~~~~~gH~~~~~------~~~~~~~~~~~~~fl~~ 724 (732)
+.++++++++++||++... .....+.+..+.+||.+
T Consensus 199 --------~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~fl~~ 240 (241)
T 3f67_A 199 --------NATAEIVVYPEADHAFNADYRASYHEESAKDGWQRMLAWFAQ 240 (241)
T ss_dssp --------TCSEEEEEETTCCTTTTCTTSTTCCHHHHHHHHHHHHHHHTT
T ss_pred --------CCCcEEEEECCCCcceecCCCCCCCHHHHHHHHHHHHHHHhh
Confidence 8899999999999998632 22235667778888865
|
| >3doh_A Esterase; alpha-beta hydrolase, beta sheet; 2.60A {Thermotoga maritima} PDB: 3doi_A | Back alignment and structure |
|---|
Probab=99.89 E-value=3.1e-22 Score=214.34 Aligned_cols=221 Identities=15% Similarity=0.131 Sum_probs=172.7
Q ss_pred eEEEEEEEcc-CCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCC--------cCh-hHHHHHHhcCcEEEEEcc
Q 004766 450 HVHQVFVPSK-DGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPS--------FSV-SRTILMRHLGAVFCIANI 519 (732)
Q Consensus 450 ~~~~~~~~s~-dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~--------~~~-~~~~~l~~~G~~v~~~~~ 519 (732)
..+.+.+.+. || .++++.++.|+++.+.+++|+||++||+.+....+. +.. ....+....|+.++.+++
T Consensus 143 ~~~~~~~~~~~dg-~~l~~~v~~P~~~~~~~~~Pvvv~lHG~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~vv~pd~ 221 (380)
T 3doh_A 143 DFLAFTFKDPETG-VEIPYRLFVPKDVNPDRKYPLVVFLHGAGERGTDNYLQVAGNRGAVVWAQPRYQVVHPCFVLAPQC 221 (380)
T ss_dssp GEEEEEEECTTTC-CEEEEEEECCSSCCTTSCEEEEEEECCGGGCSSSSSHHHHSSTTTTGGGSHHHHTTSCCEEEEECC
T ss_pred cccceeeccCCCC-cEEEEEEEcCCCCCCCCCccEEEEECCCCCCCCchhhhhhccccceeecCccccccCCEEEEEecC
Confidence 4567788888 99 999999999998666788999999999876533221 100 012233457899999999
Q ss_pred cCCCCCchhHHhcccccCCccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCccccc
Q 004766 520 RGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDML 599 (732)
Q Consensus 520 rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~ 599 (732)
||++++|..|...+........+.|+.+++++++++..+|++||+|+|+|+||++++.++.++|++|+++|+.+|..+.
T Consensus 222 ~g~~~~~~~~~~~~~~~~~~~~~~d~~~~i~~~~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~sg~~~~- 300 (380)
T 3doh_A 222 PPNSSWSTLFTDRENPFNPEKPLLAVIKIIRKLLDEYNIDENRIYITGLSMGGYGTWTAIMEFPELFAAAIPICGGGDV- 300 (380)
T ss_dssp CTTCCSBTTTTCSSCTTSBCHHHHHHHHHHHHHHHHSCEEEEEEEEEEETHHHHHHHHHHHHCTTTCSEEEEESCCCCG-
T ss_pred CCCCcccccccccccccCCcchHHHHHHHHHHHHHhcCCCcCcEEEEEECccHHHHHHHHHhCCccceEEEEecCCCCh-
Confidence 9999999999876555556778999999999999887789999999999999999999999999999999999887411
Q ss_pred ccccCCCCCccccccCCCCCHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhh
Q 004766 600 RYHKFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVL 679 (732)
Q Consensus 600 ~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~ 679 (732)
..+... ..+|+|++||.+|..||+.++.+++++|+++
T Consensus 301 ---------------------------------~~~~~~---------~~~P~lii~G~~D~~vp~~~~~~~~~~l~~~- 337 (380)
T 3doh_A 301 ---------------------------------SKVERI---------KDIPIWVFHAEDDPVVPVENSRVLVKKLAEI- 337 (380)
T ss_dssp ---------------------------------GGGGGG---------TTSCEEEEEETTCSSSCTHHHHHHHHHHHHT-
T ss_pred ---------------------------------hhhhhc---------cCCCEEEEecCCCCccCHHHHHHHHHHHHHC-
Confidence 011111 2379999999999999999999999999988
Q ss_pred cCCCCCCCCCCCEEEEEeCCC---CCCCCCchHHHHHHHH--HHHHHHHHH
Q 004766 680 CTSLENSPQTNPIIGRIERKA---GHGVGLPTQKMIDEAA--DRYGFMAKM 725 (732)
Q Consensus 680 ~~~~~~~~~~~~~~~~~~~~~---gH~~~~~~~~~~~~~~--~~~~fl~~~ 725 (732)
|.++++++++++ +|++..... +...+. .+++||.++
T Consensus 338 ---------g~~~~~~~~~~~~h~~h~~~~H~~-~~~~~~~~~i~~wL~~~ 378 (380)
T 3doh_A 338 ---------GGKVRYTEYEKGFMEKHGWDPHGS-WIPTYENQEAIEWLFEQ 378 (380)
T ss_dssp ---------TCCEEEEEECTTHHHHTTCCTTCT-HHHHHTCHHHHHHHHTC
T ss_pred ---------CCceEEEEecCCcccCCCCCCchh-HHHhcCCHHHHHHHHhh
Confidence 889999999999 443322111 223344 788898764
|
| >1l7a_A Cephalosporin C deacetylase; structural genomics, alpha-beta-alpha sandwich, PSI, protein structure initiative; 1.50A {Bacillus subtilis} SCOP: c.69.1.25 PDB: 1odt_C 1ods_A 3fvt_A 3fvr_A 3fyu_A* 2xlb_A 2xlc_A 3fyt_A* 3fyu_B* | Back alignment and structure |
|---|
Probab=99.89 E-value=2e-22 Score=209.90 Aligned_cols=243 Identities=15% Similarity=0.122 Sum_probs=172.1
Q ss_pred CCceEEEEEEEccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCc-cCCCCcChhHHHHHHhcCcEEEEEcccCCCCC
Q 004766 447 SEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNI-SVTPSFSVSRTILMRHLGAVFCIANIRGGGEY 525 (732)
Q Consensus 447 ~~~~~~~~~~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~-~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~ 525 (732)
..+..+.+.+++.|| .+|+++++.|++ .++.|+||++||+.+. .. .+. ....++ ++||+|+++|+||.|+.
T Consensus 52 ~~~~~~~~~~~~~~g-~~i~~~~~~P~~---~~~~p~vv~~HG~~~~~~~--~~~-~~~~l~-~~g~~v~~~d~rg~g~s 123 (318)
T 1l7a_A 52 DGVKVYRLTYKSFGN-ARITGWYAVPDK---EGPHPAIVKYHGYNASYDG--EIH-EMVNWA-LHGYATFGMLVRGQQRS 123 (318)
T ss_dssp SSEEEEEEEEEEGGG-EEEEEEEEEESS---CSCEEEEEEECCTTCCSGG--GHH-HHHHHH-HTTCEEEEECCTTTSSS
T ss_pred CCeEEEEEEEEccCC-CEEEEEEEeeCC---CCCccEEEEEcCCCCCCCC--Ccc-cccchh-hCCcEEEEecCCCCCCC
Confidence 345778899999899 999999999986 4678999999998765 32 222 233444 48999999999999987
Q ss_pred chhHHhcccc----------cC----CccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEE
Q 004766 526 GEEWHKGGAL----------AK----KQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALA 591 (732)
Q Consensus 526 g~~~~~~~~~----------~~----~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~ 591 (732)
+..+...+.. .. -...++|+.+++++|.++..+|+++|+++|+|+||.+++.++.++|+ ++++|+
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~~~-~~~~v~ 202 (318)
T 1l7a_A 124 EDTSISPHGHALGWMTKGILDKDTYYYRGVYLDAVRALEVISSFDEVDETRIGVTGGSQGGGLTIAAAALSDI-PKAAVA 202 (318)
T ss_dssp CCCCCCSSCCSSSSTTTTTTCTTTCHHHHHHHHHHHHHHHHHHSTTEEEEEEEEEEETHHHHHHHHHHHHCSC-CSEEEE
T ss_pred CCcccccCCccccceeccCCCHHHHHHHHHHHHHHHHHHHHHhCCCcccceeEEEecChHHHHHHHHhccCCC-ccEEEe
Confidence 6543211100 00 02458999999999999988899999999999999999999999887 666777
Q ss_pred cCCccccc-ccccCCCCCcc------ccccCCC-CCHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCC
Q 004766 592 HVGVMDML-RYHKFTIGHAW------VSDFGCS-EEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRV 663 (732)
Q Consensus 592 ~~p~~d~~-~~~~~~~~~~~------~~~~g~p-~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v 663 (732)
.+|+++.. ..........| ...++.+ .....+..+..++|...+.+ +.+|+|+++|.+|..|
T Consensus 203 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~P~li~~g~~D~~~ 272 (318)
T 1l7a_A 203 DYPYLSNFERAIDVALEQPYLEINSFFRRNGSPETEVQAMKTLSYFDIMNLADR----------VKVPVLMSIGLIDKVT 272 (318)
T ss_dssp ESCCSCCHHHHHHHCCSTTTTHHHHHHHHSCCHHHHHHHHHHHHTTCHHHHGGG----------CCSCEEEEEETTCSSS
T ss_pred cCCcccCHHHHHhcCCcCccHHHHHHHhccCCcccHHHHHHhhccccHHHHHhh----------CCCCEEEEeccCCCCC
Confidence 88865422 11111111111 0111112 11223333444566665555 6799999999999999
Q ss_pred CchHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeCCCCCCCCCchHHHHHHHHHHHHHHHHHhC
Q 004766 664 VPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLG 727 (732)
Q Consensus 664 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 727 (732)
|+.++.++++++. .++++++++++||+.. .+....+.+||.++|+
T Consensus 273 ~~~~~~~~~~~l~-------------~~~~~~~~~~~~H~~~------~~~~~~~~~fl~~~l~ 317 (318)
T 1l7a_A 273 PPSTVFAAYNHLE-------------TKKELKVYRYFGHEYI------PAFQTEKLAFFKQILK 317 (318)
T ss_dssp CHHHHHHHHHHCC-------------SSEEEEEETTCCSSCC------HHHHHHHHHHHHHHHC
T ss_pred CcccHHHHHhhcC-------------CCeeEEEccCCCCCCc------chhHHHHHHHHHHHhC
Confidence 9999988887764 2489999999999932 2345678899999885
|
| >3ebl_A Gibberellin receptor GID1; alpha/beta hydrolase, lipase, gibberellin signaling pathway, hydrolase, nucleus, hydrolase receptor; HET: GA4; 1.90A {Oryza sativa subsp} PDB: 3ed1_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=3.7e-21 Score=204.21 Aligned_cols=245 Identities=14% Similarity=0.140 Sum_probs=164.2
Q ss_pred CCceEEEEEEEccCCCeeEEEEEEE-cCCC--------------------CCCCCccEEEEEcCCCCccCCCC---cChh
Q 004766 447 SEFHVHQVFVPSKDGSTKIPMFIVS-KKNI--------------------KLDGSHPCLLYGYGGFNISVTPS---FSVS 502 (732)
Q Consensus 447 ~~~~~~~~~~~s~dG~~~i~~~~~~-p~~~--------------------~~~~~~P~vv~~hG~~~~~~~~~---~~~~ 502 (732)
..+..+.+.+.+.+| +.+.++. |+.. ...++.|+||++|||........ |...
T Consensus 60 ~~v~~~dv~~~~~~g---l~~~~~~~P~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Pvvv~~HGGg~~~g~~~~~~~~~~ 136 (365)
T 3ebl_A 60 EGVSSFDHIIDQSVG---LEVRIYRAAAEGDAEEGAAAVTRPILEFLTDAPAAEPFPVIIFFHGGSFVHSSASSTIYDSL 136 (365)
T ss_dssp TTEEEEEEEEETTTT---EEEEEEEEC----------------CGGGGSCCBSSCCEEEEEECCSTTTSCCTTBHHHHHH
T ss_pred CCCceeeEEecCCCC---ceEEEEeCCCccccccccccccccccccccCCCCCCcceEEEEEcCCccccCCCchhhHHHH
Confidence 345778888988888 4555555 7642 23467899999999854332222 3333
Q ss_pred HHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCccHHHHHHHHHHHHHHcC----CCCCC-cEEEEecChhHHHHHH
Q 004766 503 RTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAG----YTQSR-KLCIEGGSNGGLLVGA 577 (732)
Q Consensus 503 ~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~----~~d~~-~i~i~G~S~GG~l~~~ 577 (732)
...+..+.||+|+.+|+|++++.. ....++|+.++++||.++. .+|++ ||+|+|+|+||++++.
T Consensus 137 ~~~la~~~g~~Vv~~dyR~~p~~~-----------~~~~~~D~~~a~~~l~~~~~~~~~~d~~~ri~l~G~S~GG~la~~ 205 (365)
T 3ebl_A 137 CRRFVKLSKGVVVSVNYRRAPEHR-----------YPCAYDDGWTALKWVMSQPFMRSGGDAQARVFLSGDSSGGNIAHH 205 (365)
T ss_dssp HHHHHHHHTSEEEEECCCCTTTSC-----------TTHHHHHHHHHHHHHHHCTTTEETTTTEEEEEEEEETHHHHHHHH
T ss_pred HHHHHHHCCCEEEEeeCCCCCCCC-----------CcHHHHHHHHHHHHHHhCchhhhCCCCCCcEEEEeeCccHHHHHH
Confidence 334444349999999999977532 2356899999999999765 57999 9999999999999999
Q ss_pred HHhhCCC---eeeEEEEcCCcccccccccCCCCCcccccc-CCC-CCHHHHHHH-H------------hcCccc-CCCCC
Q 004766 578 CINQRPD---LFGCALAHVGVMDMLRYHKFTIGHAWVSDF-GCS-EEEEEFYWL-I------------KYSPLH-NVRRP 638 (732)
Q Consensus 578 ~~~~~p~---~f~a~v~~~p~~d~~~~~~~~~~~~~~~~~-g~p-~~~~~~~~~-~------------~~sp~~-~~~~~ 638 (732)
++.+.++ .++++|+.+|+++........ ..+ ..+ ......+.+ . ..+|+. .....
T Consensus 206 ~a~~~~~~~~~~~g~vl~~p~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l 279 (365)
T 3ebl_A 206 VAVRAADEGVKVCGNILLNAMFGGTERTESE------RRLDGKYFVTLQDRDWYWKAYLPEDADRDHPACNPFGPNGRRL 279 (365)
T ss_dssp HHHHHHHTTCCCCEEEEESCCCCCSSCCHHH------HHHTTTSSCCHHHHHHHHHHHSCTTCCTTSTTTCTTSTTCCCC
T ss_pred HHHHHHhcCCceeeEEEEccccCCCcCChhh------hhcCCCcccCHHHHHHHHHHhCCCCCCCCCcccCCCCCcchhh
Confidence 9987665 799999999998864322100 000 000 001111111 1 112332 11111
Q ss_pred CCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeCCCCCCCCC--chHHHHHHHH
Q 004766 639 WEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGL--PTQKMIDEAA 716 (732)
Q Consensus 639 ~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~--~~~~~~~~~~ 716 (732)
.....||+||+||++|..+ .++.+++++|+++ |++++++++++++|++.. ...+..+.+.
T Consensus 280 ------~~~~~pP~Li~~G~~D~l~--~~~~~~~~~L~~~----------g~~v~l~~~~g~~H~f~~~~~~~~~~~~~~ 341 (365)
T 3ebl_A 280 ------GGLPFAKSLIIVSGLDLTC--DRQLAYADALRED----------GHHVKVVQCENATVGFYLLPNTVHYHEVME 341 (365)
T ss_dssp ------TTSCCCCEEEEEETTSTTH--HHHHHHHHHHHHT----------TCCEEEEEETTCCTTGGGSSCSHHHHHHHH
T ss_pred ------ccCCCCCEEEEEcCcccch--hHHHHHHHHHHHC----------CCCEEEEEECCCcEEEeccCCCHHHHHHHH
Confidence 0002389999999999654 4678999999988 899999999999999751 1233467888
Q ss_pred HHHHHHHHHhCCC
Q 004766 717 DRYGFMAKMLGAS 729 (732)
Q Consensus 717 ~~~~fl~~~l~~~ 729 (732)
.+.+||.++++.+
T Consensus 342 ~i~~Fl~~~~~~~ 354 (365)
T 3ebl_A 342 EISDFLNANLYYG 354 (365)
T ss_dssp HHHHHHHHHCC--
T ss_pred HHHHHHHHhhhcc
Confidence 9999999998754
|
| >3bjr_A Putative carboxylesterase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.09A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=99.88 E-value=3.3e-22 Score=204.98 Aligned_cols=234 Identities=12% Similarity=0.013 Sum_probs=167.2
Q ss_pred eEEEEEEEccCCCeeEEEEEEEcCCC---CCCCCccEEEEEcCCCCccCC-CCcChhHHHHHHhcCcEEEEEcccCCCCC
Q 004766 450 HVHQVFVPSKDGSTKIPMFIVSKKNI---KLDGSHPCLLYGYGGFNISVT-PSFSVSRTILMRHLGAVFCIANIRGGGEY 525 (732)
Q Consensus 450 ~~~~~~~~s~dG~~~i~~~~~~p~~~---~~~~~~P~vv~~hG~~~~~~~-~~~~~~~~~~l~~~G~~v~~~~~rG~g~~ 525 (732)
..+.+.+.+.+| ..+++.++ |+.. ..+++.|+||++||+...... ..|. .+...|+++||.|+++|+||.++.
T Consensus 18 ~~~~v~~~~~~g-~~~~~~~y-p~~~~~~~~~~~~p~vv~lHGgg~~~~~~~~~~-~~~~~l~~~G~~v~~~d~~g~~~~ 94 (283)
T 3bjr_A 18 QGMQVIKQKLTA-TCAQLTGY-LHQPDTNAHQTNLPAIIIVPGGSYTHIPVAQAE-SLAMAFAGHGYQAFYLEYTLLTDQ 94 (283)
T ss_dssp CSSEEEEEECTT-SSCEEEEE-EC--------CCEEEEEEECCSTTTCCCHHHHH-HHHHHHHTTTCEEEEEECCCTTTC
T ss_pred CCcceEEeecCC-CceeEEEe-cCCccccccCCCCcEEEEECCCccccCCccccH-HHHHHHHhCCcEEEEEeccCCCcc
Confidence 445677888899 88999888 7652 134788999999997532212 1232 244556669999999999998764
Q ss_pred chhHHhcccccCCccHHHHHHHHHHHHHHcC---CCCCCcEEEEecChhHHHHHHHHhhCCCe-------------eeEE
Q 004766 526 GEEWHKGGALAKKQNCFDDFISASEYLISAG---YTQSRKLCIEGGSNGGLLVGACINQRPDL-------------FGCA 589 (732)
Q Consensus 526 g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~---~~d~~~i~i~G~S~GG~l~~~~~~~~p~~-------------f~a~ 589 (732)
+ ........|+.+++++|.+.. .+|+++|+++|+|+||.+++.++.++|+. ++++
T Consensus 95 ~---------~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~ 165 (283)
T 3bjr_A 95 Q---------PLGLAPVLDLGRAVNLLRQHAAEWHIDPQQITPAGFSVGGHIVALYNDYWATRVATELNVTPAMLKPNNV 165 (283)
T ss_dssp S---------SCBTHHHHHHHHHHHHHHHSHHHHTEEEEEEEEEEETHHHHHHHHHHHHTTTHHHHHHTCCHHHHCCSSE
T ss_pred c---------cCchhHHHHHHHHHHHHHHHHHHhCCCcccEEEEEECHHHHHHHHHHhhccccchhhcCCCcCCCCccEE
Confidence 3 122345789999999998753 36788999999999999999999999987 8999
Q ss_pred EEcCCcccccccccCCCCCccccccCCCCCHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHH
Q 004766 590 LAHVGVMDMLRYHKFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSL 669 (732)
Q Consensus 590 v~~~p~~d~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~ 669 (732)
|+.+|+.++........ ..+...++ .+...+|...+.+ +.+|+|++||.+|..||+.++.
T Consensus 166 v~~~p~~~~~~~~~~~~-~~~~~~~~---------~~~~~~~~~~~~~----------~~~P~lii~G~~D~~~p~~~~~ 225 (283)
T 3bjr_A 166 VLGYPVISPLLGFPKDD-ATLATWTP---------TPNELAADQHVNS----------DNQPTFIWTTADDPIVPATNTL 225 (283)
T ss_dssp EEESCCCCTTSBC---------CCCC---------CGGGGCGGGSCCT----------TCCCEEEEEESCCTTSCTHHHH
T ss_pred EEcCCcccccccccccc-chHHHHHH---------HhHhcCHHHhccC----------CCCCEEEEEcCCCCCCChHHHH
Confidence 99999887533211000 01111111 1234567666655 7899999999999999999999
Q ss_pred HHHHHHHHhhcCCCCCCCCCCCEEEEEeCCCCCCCCCchH-----------HHHHHHHHHHHHHHHH
Q 004766 670 KLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQ-----------KMIDEAADRYGFMAKM 725 (732)
Q Consensus 670 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~-----------~~~~~~~~~~~fl~~~ 725 (732)
+++++|+.. +.++++++++++||++..... ...+....+.+||.++
T Consensus 226 ~~~~~l~~~----------g~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~i~~fl~~~ 282 (283)
T 3bjr_A 226 AYATALATA----------KIPYELHVFKHGPHGLALANAQTAWKPDANQPHVAHWLTLALEWLADN 282 (283)
T ss_dssp HHHHHHHHT----------TCCEEEEEECCCSHHHHHHHHHHSCC-------CCHHHHHHHHHHHHT
T ss_pred HHHHHHHHC----------CCCeEEEEeCCCCcccccccccccccccccchhHHHHHHHHHHHHhhc
Confidence 999999987 889999999999997653321 1135566778888753
|
| >3qh4_A Esterase LIPW; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, tuberculosis, O LIPW, heroin esterase; 1.75A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=99.88 E-value=9.7e-22 Score=204.84 Aligned_cols=236 Identities=17% Similarity=0.105 Sum_probs=170.7
Q ss_pred CceEEEEEEEccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCc-cCCCCcChhHHHHHHhcCcEEEEEcccCCCCCc
Q 004766 448 EFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNI-SVTPSFSVSRTILMRHLGAVFCIANIRGGGEYG 526 (732)
Q Consensus 448 ~~~~~~~~~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~-~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g 526 (732)
.+.++.+.+++.|| ..|++.++.|++ ++.|+||++|||... .....+......++.+.||+|+.+|+|++++..
T Consensus 57 ~~~~~~~~i~~~~G-~~i~~~~~~P~~----~~~p~vv~~HGgG~~~g~~~~~~~~~~~la~~~g~~vv~~dyr~~p~~~ 131 (317)
T 3qh4_A 57 GVAVADDVVTGEAG-RPVPVRIYRAAP----TPAPVVVYCHAGGFALGNLDTDHRQCLELARRARCAVVSVDYRLAPEHP 131 (317)
T ss_dssp CCEEEEEEEECTTS-CEEEEEEEECSC----SSEEEEEEECCSTTTSCCTTTTHHHHHHHHHHHTSEEEEECCCCTTTSC
T ss_pred cceEEEEEecCCCC-CeEEEEEEecCC----CCCcEEEEECCCcCccCChHHHHHHHHHHHHHcCCEEEEecCCCCCCCC
Confidence 45778899999999 999999999975 578999999997532 222334444455555569999999999887632
Q ss_pred hhHHhcccccCCccHHHHHHHHHHHHHHc---CCCCCCcEEEEecChhHHHHHHHHhhCCC----eeeEEEEcCCccccc
Q 004766 527 EEWHKGGALAKKQNCFDDFISASEYLISA---GYTQSRKLCIEGGSNGGLLVGACINQRPD----LFGCALAHVGVMDML 599 (732)
Q Consensus 527 ~~~~~~~~~~~~~~~~~D~~~~~~~l~~~---~~~d~~~i~i~G~S~GG~l~~~~~~~~p~----~f~a~v~~~p~~d~~ 599 (732)
....++|+.++++|+.++ -.+|++||+|+|+|+||.+++.++.++++ .++++|+.+|++|..
T Consensus 132 -----------~p~~~~D~~~a~~~l~~~~~~~~~d~~ri~l~G~S~GG~lA~~~a~~~~~~~~~~~~~~vl~~p~~~~~ 200 (317)
T 3qh4_A 132 -----------YPAALHDAIEVLTWVVGNATRLGFDARRLAVAGSSAGATLAAGLAHGAADGSLPPVIFQLLHQPVLDDR 200 (317)
T ss_dssp -----------TTHHHHHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHTSSCCCCEEEEESCCCCSS
T ss_pred -----------CchHHHHHHHHHHHHHhhHHhhCCCcceEEEEEECHHHHHHHHHHHHHHhcCCCCeeEEEEECceecCC
Confidence 245689999999999885 34689999999999999999999987655 489999999999875
Q ss_pred ccccCCCCCccccccCC-C-CCHHH----HHHHHh-------cCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCch
Q 004766 600 RYHKFTIGHAWVSDFGC-S-EEEEE----FYWLIK-------YSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPL 666 (732)
Q Consensus 600 ~~~~~~~~~~~~~~~g~-p-~~~~~----~~~~~~-------~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~ 666 (732)
.... ..++.. + ..... +..+.. .+|.....- ...||+||+||++|..++
T Consensus 201 ~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l---------~~lpP~li~~G~~D~~~~-- 262 (317)
T 3qh4_A 201 PTAS-------RSEFRATPAFDGEAASLMWRHYLAGQTPSPESVPGRRGQL---------AGLPATLITCGEIDPFRD-- 262 (317)
T ss_dssp CCHH-------HHHTTTCSSSCHHHHHHHHHHHHTTCCCCTTTCGGGCSCC---------TTCCCEEEEEEEESTTHH--
T ss_pred CCcC-------HHHhcCCCCcCHHHHHHHHHHhcCCCCCCcccCCCccccc---------CCCCceeEEecCcCCCch--
Confidence 1110 011110 1 11111 111111 123222111 245799999999999876
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeCCCCCCCCC---chHHHHHHHHHHHHHHHHHhC
Q 004766 667 HSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGL---PTQKMIDEAADRYGFMAKMLG 727 (732)
Q Consensus 667 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~---~~~~~~~~~~~~~~fl~~~l~ 727 (732)
++.+++++|+++ |.+++++++++++|++.. ......+..+.+.+||.++|+
T Consensus 263 ~~~~~a~~l~~~----------g~~~~l~~~~g~~H~f~~~~~~~~~~~~~~~~~~~~l~~~l~ 316 (317)
T 3qh4_A 263 EVLDYAQRLLGA----------GVSTELHIFPRACHGFDSLLPEWTTSQRLFAMQGHALADAFY 316 (317)
T ss_dssp HHHHHHHHHHHT----------TCCEEEEEEEEEETTHHHHCTTSHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHc----------CCCEEEEEeCCCccchhhhcCCchHHHHHHHHHHHHHHHHhC
Confidence 889999999988 999999999999999642 112345777889999999885
|
| >3fak_A Esterase/lipase, ESTE5; HSL, hydrolase; 1.90A {Uncultured bacterium} PDB: 3g9t_A 3g9u_A 3g9z_A 3h17_A* 3h18_A* 3h19_A 3h1a_A 3h1b_A 3l1h_A 3l1i_A 3l1j_A 3v9a_A | Back alignment and structure |
|---|
Probab=99.88 E-value=1.4e-21 Score=204.19 Aligned_cols=228 Identities=17% Similarity=0.009 Sum_probs=158.9
Q ss_pred eEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCC-cChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCccHH
Q 004766 464 KIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPS-FSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCF 542 (732)
Q Consensus 464 ~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~-~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~ 542 (732)
.|++.++.|++ .++.|+||++|||........ +......++...||+|+.+|+|++++.. ....+
T Consensus 66 ~i~~~~~~p~~---~~~~p~vv~~HGGg~~~g~~~~~~~~~~~la~~~g~~vv~~dyr~~p~~~-----------~~~~~ 131 (322)
T 3fak_A 66 GCAAEWVRAPG---CQAGKAILYLHGGGYVMGSINTHRSMVGEISRASQAAALLLDYRLAPEHP-----------FPAAV 131 (322)
T ss_dssp TEEEEEEECTT---CCTTCEEEEECCSTTTSCCHHHHHHHHHHHHHHHTSEEEEECCCCTTTSC-----------TTHHH
T ss_pred CeEEEEEeCCC---CCCccEEEEEcCCccccCChHHHHHHHHHHHHhcCCEEEEEeCCCCCCCC-----------CCcHH
Confidence 48899999976 357899999999864322222 2222334444469999999999987532 34567
Q ss_pred HHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCe----eeEEEEcCCcccccccccCCCCCccc-cccCCC
Q 004766 543 DDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDL----FGCALAHVGVMDMLRYHKFTIGHAWV-SDFGCS 617 (732)
Q Consensus 543 ~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~----f~a~v~~~p~~d~~~~~~~~~~~~~~-~~~g~p 617 (732)
+|+.++++||.++ .+|++||+|+|+|+||++++.++.+.|+. ++++|+.+|++|+........ .... ..+-..
T Consensus 132 ~D~~~a~~~l~~~-~~d~~ri~l~G~S~GG~lA~~~a~~~~~~~~~~~~~~vl~~p~~~~~~~~~~~~-~~~~~~~~~~~ 209 (322)
T 3fak_A 132 EDGVAAYRWLLDQ-GFKPQHLSISGDSAGGGLVLAVLVSARDQGLPMPASAIPISPWADMTCTNDSFK-TRAEADPMVAP 209 (322)
T ss_dssp HHHHHHHHHHHHH-TCCGGGEEEEEETHHHHHHHHHHHHHHHTTCCCCSEEEEESCCCCTTCCCTHHH-HTTTTCCSCCS
T ss_pred HHHHHHHHHHHHc-CCCCceEEEEEcCcCHHHHHHHHHHHHhcCCCCceEEEEECCEecCcCCCcCHH-HhCccCcccCH
Confidence 9999999999998 56999999999999999999999876664 999999999998743221000 0000 000000
Q ss_pred CCHH-HHHHH--------HhcCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhcCCCCCCCC
Q 004766 618 EEEE-EFYWL--------IKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQ 688 (732)
Q Consensus 618 ~~~~-~~~~~--------~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~ 688 (732)
.... ....+ ...||+...-. ..||+||+||..|..+ .++.+++++|+++
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~sp~~~~~~----------~~pP~li~~g~~D~~~--~~~~~~~~~l~~~---------- 267 (322)
T 3fak_A 210 GGINKMAARYLNGADAKHPYASPNFANLK----------GLPPLLIHVGRDEVLL--DDSIKLDAKAKAD---------- 267 (322)
T ss_dssp SHHHHHHHHHHTTSCTTCTTTCGGGSCCT----------TCCCEEEEEETTSTTH--HHHHHHHHHHHHT----------
T ss_pred HHHHHHHHHhcCCCCCCCcccCCCccccc----------CCChHhEEEcCcCccH--HHHHHHHHHHHHc----------
Confidence 1000 01111 12355533222 4689999999999764 5899999999998
Q ss_pred CCCEEEEEeCCCCCCCCCc---hHHHHHHHHHHHHHHHHHhCCC
Q 004766 689 TNPIIGRIERKAGHGVGLP---TQKMIDEAADRYGFMAKMLGAS 729 (732)
Q Consensus 689 ~~~~~~~~~~~~gH~~~~~---~~~~~~~~~~~~~fl~~~l~~~ 729 (732)
|++++++++++++|++... ..+..+.++.+.+||.++|+..
T Consensus 268 g~~~~~~~~~g~~H~~~~~~~~~~~~~~~~~~i~~fl~~~l~~~ 311 (322)
T 3fak_A 268 GVKSTLEIWDDMIHVWHAFHPMLPEGKQAIVRVGEFMREQWAAL 311 (322)
T ss_dssp TCCEEEEEETTCCTTGGGGTTTCHHHHHHHHHHHHHHHHHHHC-
T ss_pred CCCEEEEEeCCceeehhhccCCCHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999987521 2234577788999999998654
|
| >1mpx_A Alpha-amino acid ester hydrolase; alpha/beta hydrolase, jellyroll, selenomethionine; 1.90A {Xanthomonas citri} SCOP: b.18.1.13 c.69.1.21 | Back alignment and structure |
|---|
Probab=99.87 E-value=1e-21 Score=222.35 Aligned_cols=258 Identities=13% Similarity=0.065 Sum_probs=178.6
Q ss_pred CCceEEEEEEEccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCcc----CC-CCcChhHH---HHHHhcCcEEEEEc
Q 004766 447 SEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNIS----VT-PSFSVSRT---ILMRHLGAVFCIAN 518 (732)
Q Consensus 447 ~~~~~~~~~~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~----~~-~~~~~~~~---~~l~~~G~~v~~~~ 518 (732)
..+..+.+.+++.|| .+|.++++.|++. ++.|+||+.||..+.. .. ..|...+. .+|+++||+|+.+|
T Consensus 21 ~~~~~~~v~i~~~DG-~~L~~~~~~P~~~---~~~P~vl~~hgyg~~~~~~~~~~~~~~~~~~~~~~~la~~Gy~Vv~~D 96 (615)
T 1mpx_A 21 NDYIKREVMIPMRDG-VKLHTVIVLPKGA---KNAPIVLTRTPYDASGRTERLASPHMKDLLSAGDDVFVEGGYIRVFQD 96 (615)
T ss_dssp CSEEEEEEEEECTTS-CEEEEEEEEETTC---CSEEEEEEEESSCHHHHTCSSCCSSHHHHSCGGGHHHHHTTCEEEEEE
T ss_pred CCCEEEEEEEECCCC-CEEEEEEEeCCCC---CCeeEEEEEcCCCCccccccccccccccccchhHHHHHhCCeEEEEEC
Confidence 456778899999999 9999999999863 6789999999744321 11 11211111 45666999999999
Q ss_pred ccCCCCCchhHHhcc-----cccCCccHHHHHHHHHHHHHHc-CCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEc
Q 004766 519 IRGGGEYGEEWHKGG-----ALAKKQNCFDDFISASEYLISA-GYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAH 592 (732)
Q Consensus 519 ~rG~g~~g~~~~~~~-----~~~~~~~~~~D~~~~~~~l~~~-~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~ 592 (732)
+||+|+++..+.... ...++....+|+.++++||.++ ++.| .||+++|+||||+++++++.++|+.|+|+|+.
T Consensus 97 ~RG~g~S~g~~~~~~~~~~~~~~~g~~~~~D~~~~i~~l~~~~~~~~-~rv~l~G~S~GG~~al~~a~~~~~~l~a~v~~ 175 (615)
T 1mpx_A 97 VRGKYGSEGDYVMTRPLRGPLNPSEVDHATDAWDTIDWLVKNVSESN-GKVGMIGSSYEGFTVVMALTNPHPALKVAVPE 175 (615)
T ss_dssp CTTSTTCCSCCCTTCCCSBTTBCSSCCHHHHHHHHHHHHHHHCTTEE-EEEEEEEETHHHHHHHHHHTSCCTTEEEEEEE
T ss_pred CCCCCCCCCccccccccccccccccccHHHHHHHHHHHHHhcCCCCC-CeEEEEecCHHHHHHHHHhhcCCCceEEEEec
Confidence 999998877654331 1122226789999999999998 7877 59999999999999999998889999999999
Q ss_pred CCcccccc-cccCCCCC------ccccccC----CC--------C----------------------CHH---------H
Q 004766 593 VGVMDMLR-YHKFTIGH------AWVSDFG----CS--------E----------------------EEE---------E 622 (732)
Q Consensus 593 ~p~~d~~~-~~~~~~~~------~~~~~~g----~p--------~----------------------~~~---------~ 622 (732)
+|+.|+.. ......+. .|...++ .+ + .+- .
T Consensus 176 ~~~~d~~~~~~~~~~G~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 255 (615)
T 1mpx_A 176 SPMIDGWMGDDWFNYGAFRQVNFDYFTGQLSKRGKGAGIARQGHDDYSNFLQAGSAGDFAKAAGLEQLPWWHKLTEHAAY 255 (615)
T ss_dssp SCCCCTTTTSSSEETTEEBGGGHHHHHHHHSSSSCCCCCCCSSSCHHHHHHHHCSHHHHHHHTTGGGSHHHHHHHHTCSS
T ss_pred CCccccccccccccCCeehhhhHHHHHHhhcccCCcccccccchhHHHHHhhcCCccchhhhhccccchHHHHHHhCCCc
Confidence 99999543 10000000 0100000 00 0 000 0
Q ss_pred HHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhcCCCCCCCCCC---CEEEEEeCC
Q 004766 623 FYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTN---PIIGRIERK 699 (732)
Q Consensus 623 ~~~~~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~---~~~~~~~~~ 699 (732)
-+++++.||..++++. .++.|+|++||.+|.+ ++.++.+++++|++. |. ++.+++.|.
T Consensus 256 d~~w~~~Sp~~~~~~~--------~I~~P~Lii~G~~D~~-~~~~~~~~~~aL~~~----------g~p~~~~~lvigp~ 316 (615)
T 1mpx_A 256 DAFWQEQALDKVMART--------PLKVPTMWLQGLWDQE-DMWGAIHSYAAMEPR----------DKRNTLNYLVMGPW 316 (615)
T ss_dssp CHHHHTTCHHHHHHTS--------CCCSCEEEEEETTCSS-CSSHHHHHHHHHGGG----------CTTSSSEEEEEESC
T ss_pred ChhhhhcChhhhhhcc--------CCCCCEEEeecccCcc-ccccHHHHHHHHHhh----------cCCCcCCEEEECCC
Confidence 0234566777665441 1689999999999998 889999999999987 54 489999888
Q ss_pred CCCCCCC------------chHHHHHHHHHHHHHHHHHhCCC
Q 004766 700 AGHGVGL------------PTQKMIDEAADRYGFMAKMLGAS 729 (732)
Q Consensus 700 ~gH~~~~------------~~~~~~~~~~~~~~fl~~~l~~~ 729 (732)
+|+... ...........++.||.++|+..
T Consensus 317 -~H~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~wfd~~Lkg~ 357 (615)
T 1mpx_A 317 -RHSQVNYDGSALGALNFEGDTARQFRHDVLRPFFDQYLVDG 357 (615)
T ss_dssp -CTTGGGSCCSEETTEECSSCHHHHHHHHTHHHHHHHHHSTT
T ss_pred -CCCCccccccccCccccCcccchhhhhhHHHHHHHHHhcCC
Confidence 697510 11111223567899999999753
|
| >3ls2_A S-formylglutathione hydrolase; psychrophilic organism; 2.20A {Pseudoalteromonas haloplanktis} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=99.87 E-value=1e-21 Score=200.83 Aligned_cols=249 Identities=13% Similarity=0.119 Sum_probs=164.5
Q ss_pred eEEEEEEEc-cCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCC----
Q 004766 450 HVHQVFVPS-KDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGE---- 524 (732)
Q Consensus 450 ~~~~~~~~s-~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~---- 524 (732)
..+++.+.| .+| .++++.++.|++...++++|+||++||+.+....+........+++++|++|+++|.++.|.
T Consensus 14 ~~~~~~~~s~~~g-~~~~~~v~~P~~~~~~~~~P~vv~lHG~~~~~~~~~~~~~~~~~~~~~g~~vv~~d~~~~g~~~~~ 92 (280)
T 3ls2_A 14 WHKQYTHSAVSTH-CTMRFAVFLPPGASESNKVPVLYWLSGLTCTDENFMQKAGAFKKAAELGIAIVAPDTSPRGDNVPN 92 (280)
T ss_dssp EEEEEEEEETTTT-EEEEEEEEECTTCBTTBCEEEEEEECCTTCCSHHHHHHSCCHHHHHHHTCEEEECCSSCCSTTSCC
T ss_pred eEEEEEEechhcC-CceEEEEEcCCCCCCCCCcCEEEEeCCCCCChhhhhcchhHHHHHhhCCeEEEEeCCccccccccc
Confidence 445666665 478 99999999999876678899999999987654321111123456676899999999764432
Q ss_pred -------CchhHHhcccccC--Cc-cHHHHHHHH-HHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcC
Q 004766 525 -------YGEEWHKGGALAK--KQ-NCFDDFISA-SEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHV 593 (732)
Q Consensus 525 -------~g~~~~~~~~~~~--~~-~~~~D~~~~-~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~ 593 (732)
.|..|+....... .. ...+.+... +.++.+. +..++|++|+|+|+||++++.++.++|++|+++++.+
T Consensus 93 ~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~l~G~S~GG~~a~~~a~~~p~~~~~~~~~s 171 (280)
T 3ls2_A 93 EDSYDFAQGAGFYVNATQAPYNTHFNMYDYVVNELPALIEQH-FPVTSTKAISGHSMGGHGALMIALKNPQDYVSASAFS 171 (280)
T ss_dssp CSCTTSSTTCCTTCBCCSTTTTTTCBHHHHHHTHHHHHHHHH-SSEEEEEEEEEBTHHHHHHHHHHHHSTTTCSCEEEES
T ss_pred ccccccccCCccccccccccccccccHHHHHHHHHHHHHHhh-CCCCCCeEEEEECHHHHHHHHHHHhCchhheEEEEec
Confidence 2233332221110 11 122333333 3444333 3335899999999999999999999999999999999
Q ss_pred CcccccccccCCCCCccccccCCCCCHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchH-HHHHH
Q 004766 594 GVMDMLRYHKFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLH-SLKLL 672 (732)
Q Consensus 594 p~~d~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~-~~~~~ 672 (732)
|++++..... .. ..+...+|.. .+ .+..++|...+++.. ....+|+||+||++|..|+... +.+++
T Consensus 172 ~~~~~~~~~~-~~-~~~~~~~g~~--~~---~~~~~~~~~~~~~~~------~~~~~p~li~~G~~D~~v~~~~~~~~~~ 238 (280)
T 3ls2_A 172 PIVNPINCPW-GV-KAFTGYLGAD--KT---TWAQYDSCKLMAKAE------QSNYLPMLVSQGDADNFLDEQLKPQNLV 238 (280)
T ss_dssp CCSCGGGSHH-HH-HHHHHHHCSC--GG---GTGGGCHHHHHHTCC------GGGCCCEEEEEETTCTTCCCCCCHHHHH
T ss_pred CccCcccCcc-hh-hHHHhhcCch--HH---HHHhcCHHHHHHhcc------ccCCCcEEEEEeCCCcccCCchhHHHHH
Confidence 9887643110 00 0001112321 11 123445555544420 0026799999999999999855 89999
Q ss_pred HHHHHhhcCCCCCCCCCCCEEEEEeCCCCCCCCCchHHHHHHHHHHHHHHHHHhC
Q 004766 673 ATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLG 727 (732)
Q Consensus 673 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 727 (732)
++|+++ |.+++++++++++|.+.. ........++|+.++|.
T Consensus 239 ~~l~~~----------g~~~~~~~~~g~~H~~~~----~~~~~~~~~~~~~~~l~ 279 (280)
T 3ls2_A 239 AVAKQK----------DYPLTLEMQTGYDHSYFF----ISSFIDQHLVFHHQYLS 279 (280)
T ss_dssp HHHHHH----------TCCEEEEEETTCCSSHHH----HHHHHHHHHHHHHHHHC
T ss_pred HHHHHh----------CCCceEEEeCCCCCchhh----HHHHHHHHHHHHHHHhc
Confidence 999998 899999999999998632 23556678899998874
|
| >3fcy_A Xylan esterase 1; alpha/beta hydrolase, carbohydrate esterase, CE7; 2.10A {Thermoanaerobacterium SP} | Back alignment and structure |
|---|
Probab=99.87 E-value=6.4e-22 Score=209.20 Aligned_cols=240 Identities=16% Similarity=0.148 Sum_probs=171.0
Q ss_pred CCceEEEEEEEccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCc
Q 004766 447 SEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYG 526 (732)
Q Consensus 447 ~~~~~~~~~~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g 526 (732)
..+..+.+.+.+.+| .+|+++++.|++ .++.|+||++||+.+.... |.. ...++. +||.|+++|+||.|+.+
T Consensus 78 ~~~~~~~~~~~~~~g-~~l~~~~~~P~~---~~~~p~vv~~HG~g~~~~~--~~~-~~~~~~-~G~~v~~~D~rG~g~s~ 149 (346)
T 3fcy_A 78 SFAECYDLYFTGVRG-ARIHAKYIKPKT---EGKHPALIRFHGYSSNSGD--WND-KLNYVA-AGFTVVAMDVRGQGGQS 149 (346)
T ss_dssp TTEEEEEEEEECGGG-CEEEEEEEEESC---SSCEEEEEEECCTTCCSCC--SGG-GHHHHT-TTCEEEEECCTTSSSSC
T ss_pred CceEEEEEEEEcCCC-CEEEEEEEecCC---CCCcCEEEEECCCCCCCCC--hhh-hhHHHh-CCcEEEEEcCCCCCCCC
Confidence 456788899999999 999999999986 4688999999999876533 332 335555 99999999999998765
Q ss_pred hhHHhc-----------ccc-cC----CccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEE
Q 004766 527 EEWHKG-----------GAL-AK----KQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCAL 590 (732)
Q Consensus 527 ~~~~~~-----------~~~-~~----~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v 590 (732)
...... +.. .. -...++|+.++++++.....+|++||+++|+|+||.+++.++.++|+ ++++|
T Consensus 150 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~D~~~a~~~l~~~~~~d~~~i~l~G~S~GG~la~~~a~~~p~-v~~~v 228 (346)
T 3fcy_A 150 QDVGGVTGNTLNGHIIRGLDDDADNMLFRHIFLDTAQLAGIVMNMPEVDEDRVGVMGPSQGGGLSLACAALEPR-VRKVV 228 (346)
T ss_dssp CCCCCCSSCCSBCSSSTTTTSCGGGCHHHHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHHHHSTT-CCEEE
T ss_pred CCCcccCCCCcCcceeccccCCHHHHHHHHHHHHHHHHHHHHHhCCCCCcCcEEEEEcCHHHHHHHHHHHhCcc-ccEEE
Confidence 432111 000 00 01236999999999999888899999999999999999999999998 99999
Q ss_pred EcCCcccccc-cccCC-CCCccc--c---ccCCC---CCHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEeeCCC
Q 004766 591 AHVGVMDMLR-YHKFT-IGHAWV--S---DFGCS---EEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHD 660 (732)
Q Consensus 591 ~~~p~~d~~~-~~~~~-~~~~~~--~---~~g~p---~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D 660 (732)
+.+|+++-.. ..... ....+. . .+..| .....+..+..+++...+.+ +.+|+|+++|.+|
T Consensus 229 l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~----------i~~P~lii~G~~D 298 (346)
T 3fcy_A 229 SEYPFLSDYKRVWDLDLAKNAYQEITDYFRLFDPRHERENEVFTKLGYIDVKNLAKR----------IKGDVLMCVGLMD 298 (346)
T ss_dssp EESCSSCCHHHHHHTTCCCGGGHHHHHHHHHHCTTCTTHHHHHHHHGGGCHHHHGGG----------CCSEEEEEEETTC
T ss_pred ECCCcccCHHHHhhccccccchHHHHHHHHhcCCCcchHHHHHHHhCcccHHHHHHh----------cCCCEEEEeeCCC
Confidence 9999764321 11111 000000 0 01112 22333344444555555554 7899999999999
Q ss_pred CCCCchHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeCCCCCCCCCchHHHHHHHHHHHHHHHH
Q 004766 661 DRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAK 724 (732)
Q Consensus 661 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~ 724 (732)
..||+.++.++++++. + ++++++++++||++.. +....+.+||.+
T Consensus 299 ~~~~~~~~~~~~~~~~------------~-~~~~~~~~~~gH~~~~------~~~~~i~~fl~~ 343 (346)
T 3fcy_A 299 QVCPPSTVFAAYNNIQ------------S-KKDIKVYPDYGHEPMR------GFGDLAMQFMLE 343 (346)
T ss_dssp SSSCHHHHHHHHTTCC------------S-SEEEEEETTCCSSCCT------THHHHHHHHHHT
T ss_pred CcCCHHHHHHHHHhcC------------C-CcEEEEeCCCCCcCHH------HHHHHHHHHHHH
Confidence 9999998887776553 2 6899999999999872 234467788865
|
| >3i6y_A Esterase APC40077; lipase, structural genomics, PSI-2, PR structure initiative, midwest center for structural genomic hydrolase; HET: MSE; 1.75A {Oleispira antarctica} PDB: 3s8y_A | Back alignment and structure |
|---|
Probab=99.87 E-value=4.6e-22 Score=203.51 Aligned_cols=247 Identities=17% Similarity=0.111 Sum_probs=165.5
Q ss_pred eEEEEEEEc-cCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCC----
Q 004766 450 HVHQVFVPS-KDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGE---- 524 (732)
Q Consensus 450 ~~~~~~~~s-~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~---- 524 (732)
..+.+.+.+ .+| .++++.++.|++...+++.|+||++||+.+.............+++++|++|+++|.|+.|.
T Consensus 16 ~~~~~~~~s~~~g-~~~~~~v~~P~~~~~~~~~p~vv~lHG~~~~~~~~~~~~~~~~~~~~~g~~vv~pd~~~~g~~~~~ 94 (280)
T 3i6y_A 16 WHKQYSHVSNTLN-CAMRFAIYLPPQASTGAKVPVLYWLSGLTCSDENFMQKAGAQRLAAELGIAIVAPDTSPRGEGVAD 94 (280)
T ss_dssp EEEEEEEEETTTT-EEEEEEEEECGGGGTTCCEEEEEEECCTTCCSSHHHHHSCCHHHHHHHTCEEEEECSSCCSTTCCC
T ss_pred cEEEEEEeccccC-CeeEEEEEeCCCCCCCCCccEEEEecCCCCChhHHhhcccHHHHHhhCCeEEEEeCCcccccccCc
Confidence 456666655 578 99999999999876678899999999987664321111113466777899999999875442
Q ss_pred -------CchhHHhcccccC---CccHHHHHH-HHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcC
Q 004766 525 -------YGEEWHKGGALAK---KQNCFDDFI-SASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHV 593 (732)
Q Consensus 525 -------~g~~~~~~~~~~~---~~~~~~D~~-~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~ 593 (732)
.|..|+....... .....+.+. +++.++.+...+ ++|++|+|+|+||++++.++.++|++|+++|+.+
T Consensus 95 ~~~~~~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~s 173 (280)
T 3i6y_A 95 DEGYDLGQGAGFYVNATQAPWNRHYQMYDYVVNELPELIESMFPV-SDKRAIAGHSMGGHGALTIALRNPERYQSVSAFS 173 (280)
T ss_dssp CSSTTSSTTCCTTCBCCSTTGGGTCBHHHHHHTHHHHHHHHHSSE-EEEEEEEEETHHHHHHHHHHHHCTTTCSCEEEES
T ss_pred ccccccccCccccccccCCCccchhhHHHHHHHHHHHHHHHhCCC-CCCeEEEEECHHHHHHHHHHHhCCccccEEEEeC
Confidence 1122222211100 001123332 344455444333 6899999999999999999999999999999999
Q ss_pred CcccccccccCCCCCccccccCCCCCHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchH-HHHHH
Q 004766 594 GVMDMLRYHKFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLH-SLKLL 672 (732)
Q Consensus 594 p~~d~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~-~~~~~ 672 (732)
|++++..... .. ..+...+|.. ... +..++|...++.. ...+|+||+||++|..|+..+ +.+++
T Consensus 174 ~~~~~~~~~~-~~-~~~~~~~~~~--~~~---~~~~~~~~~~~~~--------~~~~P~li~~G~~D~~v~~~~~~~~~~ 238 (280)
T 3i6y_A 174 PINNPVNCPW-GQ-KAFTAYLGKD--TDT---WREYDASLLMRAA--------KQYVPALVDQGEADNFLAEQLKPEVLE 238 (280)
T ss_dssp CCCCGGGSHH-HH-HHHHHHHCSC--GGG---TGGGCHHHHHHHC--------SSCCCEEEEEETTCTTHHHHTCHHHHH
T ss_pred CccccccCch-HH-HHHHHhcCCc--hHH---HHhcCHHHHHHhc--------CCCccEEEEEeCCCccccchhhHHHHH
Confidence 9887643110 00 0011112221 111 2345666555542 124899999999999999765 89999
Q ss_pred HHHHHhhcCCCCCCCCCCCEEEEEeCCCCCCCCCchHHHHHHHHHHHHHHHHHhC
Q 004766 673 ATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLG 727 (732)
Q Consensus 673 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 727 (732)
++|+++ |.+++++++++++|.+.. ......+.++|+.++|.
T Consensus 239 ~~l~~~----------g~~~~~~~~~g~~H~~~~----~~~~~~~~l~~~~~~l~ 279 (280)
T 3i6y_A 239 AAASSN----------NYPLELRSHEGYDHSYYF----IASFIEDHLRFHSNYLN 279 (280)
T ss_dssp HHHHHT----------TCCEEEEEETTCCSSHHH----HHHHHHHHHHHHHHHHT
T ss_pred HHHHHc----------CCCceEEEeCCCCccHHH----HHHhHHHHHHHHHhhcc
Confidence 999988 899999999999998632 34566778899998875
|
| >2b9v_A Alpha-amino acid ester hydrolase; catalytic triad, alpha/beta-hydrolase; 2.00A {Acetobacter pasteurianus} SCOP: b.18.1.13 c.69.1.21 PDB: 2b4k_A 1nx9_A* 1ryy_A | Back alignment and structure |
|---|
Probab=99.87 E-value=1.9e-21 Score=220.89 Aligned_cols=254 Identities=13% Similarity=0.059 Sum_probs=178.0
Q ss_pred CceEEEEEEEccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCcc-CCCCcC-----hhH--H-HHHHhcCcEEEEEc
Q 004766 448 EFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNIS-VTPSFS-----VSR--T-ILMRHLGAVFCIAN 518 (732)
Q Consensus 448 ~~~~~~~~~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~-~~~~~~-----~~~--~-~~l~~~G~~v~~~~ 518 (732)
.+..+.+.+++.|| ++|.++++.|++. ++.|+||+.||..... ....|. ..+ . ++|+++||+|+.+|
T Consensus 34 ~~~~~~v~i~~~DG-~~L~~~l~~P~~~---~~~PvIl~~hpyg~~~~~~~~~~~~~~~~~~~~~~~~la~~GyaVv~~D 109 (652)
T 2b9v_A 34 DYIKREVMVPMRDG-VKLYTVIVIPKNA---RNAPILLTRTPYNAKGRANRVPNALTMREVLPQGDDVFVEGGYIRVFQD 109 (652)
T ss_dssp SEEEEEEEEECTTS-CEEEEEEEEETTC---CSEEEEEEEESSCHHHHTCSSTTCSSHHHHSCGGGHHHHHTTCEEEEEE
T ss_pred CcEEEEEEEECCCC-cEEEEEEEecCCC---CCccEEEEECCCCCCcccccccccccccccccchHHHHHhCCCEEEEEe
Confidence 46678899999999 9999999999863 6789999998633220 011111 111 1 45566999999999
Q ss_pred ccCCCCCchhHHhcc-----cccCCccHHHHHHHHHHHHHHc-CCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEc
Q 004766 519 IRGGGEYGEEWHKGG-----ALAKKQNCFDDFISASEYLISA-GYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAH 592 (732)
Q Consensus 519 ~rG~g~~g~~~~~~~-----~~~~~~~~~~D~~~~~~~l~~~-~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~ 592 (732)
+||+|+++..|.... ...++....+|+.++++||.++ +++| .||+++|+|+||+++++++.++|+.|+|+|+.
T Consensus 110 ~RG~g~S~g~~~~~~~~~~~~~~~g~~~~~D~~~~i~~l~~~~~~~d-~rvgl~G~SyGG~~al~~a~~~~~~lka~v~~ 188 (652)
T 2b9v_A 110 IRGKYGSQGDYVMTRPPHGPLNPTKTDETTDAWDTVDWLVHNVPESN-GRVGMTGSSYEGFTVVMALLDPHPALKVAAPE 188 (652)
T ss_dssp CTTSTTCCSCCCTTCCCSBTTBCSSCCHHHHHHHHHHHHHHSCTTEE-EEEEEEEEEHHHHHHHHHHTSCCTTEEEEEEE
T ss_pred cCcCCCCCCcccccccccccccccccchhhHHHHHHHHHHhcCCCCC-CCEEEEecCHHHHHHHHHHhcCCCceEEEEec
Confidence 999999887764432 1112236889999999999999 8887 59999999999999999999889999999999
Q ss_pred CCcccccc-cccCCCCC------ccccc------------------c----------------------------CCCCC
Q 004766 593 VGVMDMLR-YHKFTIGH------AWVSD------------------F----------------------------GCSEE 619 (732)
Q Consensus 593 ~p~~d~~~-~~~~~~~~------~~~~~------------------~----------------------------g~p~~ 619 (732)
+|+.|+.. ......+. .|... | +.|..
T Consensus 189 ~~~~d~~~~d~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 268 (652)
T 2b9v_A 189 SPMVDGWMGDDWFHYGAFRQGAFDYFVSQMTARGGGNDIPRRDADDYTNFLKAGSAGSFATQAGLDQYPFWQRMHAHPAY 268 (652)
T ss_dssp EECCCTTTBSSSEETTEEBTTHHHHHHHHHSSSSCCCCCCCSSSCHHHHHHHHCSHHHHHHHTTGGGCHHHHHHHHCCSS
T ss_pred ccccccccccceecCCchhhhhHHHHHHhhhcccCcccccccchHHHHHHhhcCchhhHHHhhccccchHHHHHHhCCCC
Confidence 99999753 11000000 01000 0 00000
Q ss_pred HHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhcCCCCCCCCC--CCEEEEEe
Q 004766 620 EEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQT--NPIIGRIE 697 (732)
Q Consensus 620 ~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~ 697 (732)
-+++++.||..++++. .++.|+|++||.+|.+ +..++.+++++|++. + +++.+++.
T Consensus 269 ---d~yw~~~Sp~~~~~~~--------~I~~PvLiv~G~~D~~-~~~~~~~~~~aL~~~----------g~~~~~~lvig 326 (652)
T 2b9v_A 269 ---DAFWQGQALDKILAQR--------KPTVPMLWEQGLWDQE-DMWGAIHAWQALKDA----------DVKAPNTLVMG 326 (652)
T ss_dssp ---SHHHHTTCHHHHHHHH--------CCCSCEEEEEETTCSS-CSSHHHHHHHHHHHT----------TCSSCEEEEEE
T ss_pred ---ChHHhcCChhhhhhcC--------CCCCCEEEEeecCCcc-ccccHHHHHHHHHhc----------CCCCCCEEEEC
Confidence 0123456776554431 1688999999999998 778999999999987 6 88999998
Q ss_pred CCCCCCCCC-----c-------hHHHHHHHHHHHHHHHHHhCCC
Q 004766 698 RKAGHGVGL-----P-------TQKMIDEAADRYGFMAKMLGAS 729 (732)
Q Consensus 698 ~~~gH~~~~-----~-------~~~~~~~~~~~~~fl~~~l~~~ 729 (732)
|. +|+... . ..........++.||.++|+..
T Consensus 327 p~-~H~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~wfd~~Lkg~ 369 (652)
T 2b9v_A 327 PW-RHSGVNYNGSTLGPLEFEGDTAHQYRRDVFRPFFDEYLKPG 369 (652)
T ss_dssp SC-CTTGGGSCCSEETTEECSSCHHHHHHHHTHHHHHHHHHSTT
T ss_pred CC-CCCCcccccccCCccccccccchhhhhhHHHHHHHHHhCCC
Confidence 86 797511 0 1111223567899999999753
|
| >2zsh_A Probable gibberellin receptor GID1L1; plant hormone receptor, gibberellin, gibberellin signaling pathway, hydrolase, nucleus, receptor, developmental protein; HET: GA3; 1.80A {Arabidopsis thaliana} PDB: 2zsi_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.2e-20 Score=199.65 Aligned_cols=240 Identities=14% Similarity=0.087 Sum_probs=163.3
Q ss_pred CceEEEEEEEccCCCeeEEEEEEEcCCCC--------------CCCCccEEEEEcCCCCccCCCC---cChhHHHHHHhc
Q 004766 448 EFHVHQVFVPSKDGSTKIPMFIVSKKNIK--------------LDGSHPCLLYGYGGFNISVTPS---FSVSRTILMRHL 510 (732)
Q Consensus 448 ~~~~~~~~~~s~dG~~~i~~~~~~p~~~~--------------~~~~~P~vv~~hG~~~~~~~~~---~~~~~~~~l~~~ 510 (732)
.+..+.+.+.+ + ..+++.++.|++.. ..++.|+||++|||........ |......+..++
T Consensus 69 ~v~~~dv~~~~--~-~~l~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~p~vv~~HGgg~~~g~~~~~~~~~~~~~la~~~ 145 (351)
T 2zsh_A 69 GVFSFDVLIDR--R-INLLSRVYRPAYADQEQPPSILDLEKPVDGDIVPVILFFHGGSFAHSSANSAIYDTLCRRLVGLC 145 (351)
T ss_dssp TEEEEEEEEET--T-TTEEEEEEEECCTTCSSCCCTTSTTCCCCSSSCEEEEEECCSTTTSCCTTBHHHHHHHHHHHHHH
T ss_pred CceEEEEEecC--C-CCeEEEEEecCCccccccccccccccccCCCCceEEEEECCCcCcCCCCcchhHHHHHHHHHHHc
Confidence 34566677765 5 57889999998642 2467899999999754322222 333333444268
Q ss_pred CcEEEEEcccCCCCCchhHHhcccccCCccHHHHHHHHHHHHHHcC----CCCCC-cEEEEecChhHHHHHHHHhhCCC-
Q 004766 511 GAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAG----YTQSR-KLCIEGGSNGGLLVGACINQRPD- 584 (732)
Q Consensus 511 G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~----~~d~~-~i~i~G~S~GG~l~~~~~~~~p~- 584 (732)
||+|+.+|+||+++.. ....++|+.++++||.++. .+|++ ||+++|+|+||++++.++.++|+
T Consensus 146 g~~vv~~d~rg~~~~~-----------~~~~~~D~~~~~~~l~~~~~~~~~~d~~~~i~l~G~S~GG~la~~~a~~~~~~ 214 (351)
T 2zsh_A 146 KCVVVSVNYRRAPENP-----------YPCAYDDGWIALNWVNSRSWLKSKKDSKVHIFLAGDSSGGNIAHNVALRAGES 214 (351)
T ss_dssp TSEEEEECCCCTTTSC-----------TTHHHHHHHHHHHHHHTCGGGCCTTTSSCEEEEEEETHHHHHHHHHHHHHHTT
T ss_pred CCEEEEecCCCCCCCC-----------CchhHHHHHHHHHHHHhCchhhcCCCCCCcEEEEEeCcCHHHHHHHHHHhhcc
Confidence 9999999999987632 2356899999999999864 47899 99999999999999999999888
Q ss_pred --eeeEEEEcCCcccccccccCCCCCccccccCCC-CCHHHHHH-HHhcC------------cccCCCCCCCCCCCCCC-
Q 004766 585 --LFGCALAHVGVMDMLRYHKFTIGHAWVSDFGCS-EEEEEFYW-LIKYS------------PLHNVRRPWEQNPDKPF- 647 (732)
Q Consensus 585 --~f~a~v~~~p~~d~~~~~~~~~~~~~~~~~g~p-~~~~~~~~-~~~~s------------p~~~~~~~~~~~~~~~~- 647 (732)
+++++|+.+|+++...... ......+.+ ......+. +..+. |+...... ...
T Consensus 215 ~~~v~~~vl~~p~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------l~~i 283 (351)
T 2zsh_A 215 GIDVLGNILLNPMFGGNERTE-----SEKSLDGKYFVTVRDRDWYWKAFLPEGEDREHPACNPFSPRGKS------LEGV 283 (351)
T ss_dssp TCCCCEEEEESCCCCCSSCCH-----HHHHHTTTSSCCHHHHHHHHHHHSCTTCCTTSTTTCTTSTTSCC------CTTC
T ss_pred CCCeeEEEEECCccCCCcCCh-----hhhhcCCCcccCHHHHHHHHHHhCCCCCCCCCcccCCCCCCccc------hhhC
Confidence 8999999999887542211 000011111 11111111 12222 22111110 001
Q ss_pred CCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeCCCCCCCCCc--hHHHHHHHHHHHHHHHH
Q 004766 648 QYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLP--TQKMIDEAADRYGFMAK 724 (732)
Q Consensus 648 ~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~--~~~~~~~~~~~~~fl~~ 724 (732)
..||+||+||++|..++ ++.+++++|++. +.++++++++++||++... .....+....+.+||.+
T Consensus 284 ~~pP~Lii~G~~D~~~~--~~~~~~~~l~~~----------g~~~~~~~~~g~gH~~~~~~~~~~~~~~~~~i~~Fl~~ 350 (351)
T 2zsh_A 284 SFPKSLVVVAGLDLIRD--WQLAYAEGLKKA----------GQEVKLMHLEKATVGFYLLPNNNHFHNVMDEISAFVNA 350 (351)
T ss_dssp CCCEEEEEEETTSTTHH--HHHHHHHHHHHT----------TCCEEEEEETTCCTTTTSSSCSHHHHHHHHHHHHHHHC
T ss_pred CCCCEEEEEcCCCcchH--HHHHHHHHHHHc----------CCCEEEEEECCCcEEEEecCCCHHHHHHHHHHHHHhcC
Confidence 23699999999999876 788999999987 8899999999999998651 12235677788889864
|
| >3k2i_A Acyl-coenzyme A thioesterase 4; alpha/beta hydrolase fold seven-stranded beta-sandwich, structural genomics, structural genomics consortium, SGC; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.2e-20 Score=204.99 Aligned_cols=223 Identities=13% Similarity=0.055 Sum_probs=159.2
Q ss_pred eEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCccHHH
Q 004766 464 KIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFD 543 (732)
Q Consensus 464 ~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~ 543 (732)
.+.+.++.|++ .++.|+||++||+.+. .+. .+..+|+++||+|+++|+||.|+....+ ....++
T Consensus 144 ~l~~~l~~P~~---~~~~P~Vv~~hG~~~~----~~~-~~a~~La~~Gy~V~a~D~rG~g~~~~~~--------~~~~~~ 207 (422)
T 3k2i_A 144 RVRATLFLPPG---PGPFPGIIDIFGIGGG----LLE-YRASLLAGHGFATLALAYYNFEDLPNNM--------DNISLE 207 (422)
T ss_dssp TEEEEEEECSS---SCCBCEEEEECCTTCS----CCC-HHHHHHHTTTCEEEEEECSSSTTSCSSC--------SCEETH
T ss_pred cEEEEEEcCCC---CCCcCEEEEEcCCCcc----hhH-HHHHHHHhCCCEEEEEccCCCCCCCCCc--------ccCCHH
Confidence 78999999986 3678999999998664 122 2356677799999999999987653322 224579
Q ss_pred HHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCcccccccc----c--CC-C----------
Q 004766 544 DFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYH----K--FT-I---------- 606 (732)
Q Consensus 544 D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~----~--~~-~---------- 606 (732)
|+.+++++|.++..+++++|+|+|+|+||.+++.++.++|+ ++++|+.+|........ . .. .
T Consensus 208 d~~~~~~~l~~~~~v~~~~i~l~G~S~GG~lAl~~a~~~p~-v~a~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (422)
T 3k2i_A 208 YFEEAVCYMLQHPQVKGPGIGLLGISLGADICLSMASFLKN-VSATVSINGSGISGNTAINYKHSSIPPLGYDLRRIKVA 286 (422)
T ss_dssp HHHHHHHHHHTSTTBCCSSEEEEEETHHHHHHHHHHHHCSS-EEEEEEESCCSBCCSSCEEETTEEECCCCBCGGGCEEC
T ss_pred HHHHHHHHHHhCcCcCCCCEEEEEECHHHHHHHHHHhhCcC-ccEEEEEcCcccccCCchhhcCCcCCCcccchhhcccC
Confidence 99999999999988889999999999999999999999998 89999888876332110 0 00 0
Q ss_pred --C-CccccccCCCCCHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHH-HHHHHHHHHhhcCC
Q 004766 607 --G-HAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHS-LKLLATMQYVLCTS 682 (732)
Q Consensus 607 --~-~~~~~~~g~p~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~-~~~~~~l~~~~~~~ 682 (732)
+ ..+...+..+... ...++...+. .+.+|+|++||.+|..||+.+. ..+.++|+++
T Consensus 287 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~----------~i~~P~Lii~G~~D~~vp~~~~~~~~~~~l~~~---- 346 (422)
T 3k2i_A 287 FSGLVDIVDIRNALVGG------YKNPSMIPIE----------KAQGPILLIVGQDDHNWRSELYAQTVSERLQAH---- 346 (422)
T ss_dssp TTSCEECTTCBCCCTTG------GGSTTBCCGG----------GCCSCEEEEEETTCSSSCHHHHHHHHHHHHHHT----
T ss_pred cchhHHHHHHHhhhhhc------ccccccccHH----------HCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHhc----
Confidence 0 0000111112110 0111122223 3788999999999999999876 6888899987
Q ss_pred CCCCCCCCC-EEEEEeCCCCCCCCCc--------------------------hHHHHHHHHHHHHHHHHHhCCC
Q 004766 683 LENSPQTNP-IIGRIERKAGHGVGLP--------------------------TQKMIDEAADRYGFMAKMLGAS 729 (732)
Q Consensus 683 ~~~~~~~~~-~~~~~~~~~gH~~~~~--------------------------~~~~~~~~~~~~~fl~~~l~~~ 729 (732)
+++ +++++++++||++..+ .....+.+..+.+||.++|+..
T Consensus 347 ------g~~~~~l~~~~gagH~~~~p~~p~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~i~~Fl~~~L~~~ 414 (422)
T 3k2i_A 347 ------GKEKPQIICYPGTGHYIEPPYFPLCPASLHRLLNKHVIWGGEPRAHSKAQEDAWKQILAFFCKHLGGT 414 (422)
T ss_dssp ------TCCCCEEEEETTCCSCCCSTTCCCCCEEEETTTTEEEECCCCHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred ------CCCCCEEEEECCCCCEECCCCCCcchhhhccccCceEeeCCccHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 777 8999999999998321 1223567889999999999753
|
| >3fcx_A FGH, esterase D, S-formylglutathione hydrolase; retinoblastoma, genetic marker, cytoplasm, cytoplasmic vesicle, polymorphism, serine esterase; 1.50A {Homo sapiens} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=99.87 E-value=4e-22 Score=204.04 Aligned_cols=248 Identities=14% Similarity=0.096 Sum_probs=160.5
Q ss_pred eEEEEEEEc-cCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcc--cCCCCCc
Q 004766 450 HVHQVFVPS-KDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANI--RGGGEYG 526 (732)
Q Consensus 450 ~~~~~~~~s-~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~--rG~g~~g 526 (732)
..+.+.+.+ .+| ..+++.++.|++.. .++.|+||++||+.+..........+..+++++||+|+++|+ ||.|+.|
T Consensus 15 ~~~~~~~~s~~~~-~~~~~~v~~P~~~~-~~~~p~vv~lHG~~~~~~~~~~~~~~~~~~~~~g~~vv~~d~~~rG~~~~~ 92 (282)
T 3fcx_A 15 LQKVFEHDSVELN-CKMKFAVYLPPKAE-TGKCPALYWLSGLTCTEQNFISKSGYHQSASEHGLVVIAPDTSPRGCNIKG 92 (282)
T ss_dssp EEEEEEEEETTTT-EEEEEEEEECGGGG-TSCEEEEEEECCTTCCSHHHHHHSCCHHHHHHHTCEEEEECSCSSCCCC--
T ss_pred cEEEEEEEchhcC-CeeEEEEEcCCCCC-CCCCCEEEEEcCCCCCccchhhcchHHHHhhcCCeEEEEeccccCcccccc
Confidence 344455544 578 89999999998753 368999999999876543211111124566669999999999 8887655
Q ss_pred hh----------HHhcccccC---CccHHHHHH-HHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEc
Q 004766 527 EE----------WHKGGALAK---KQNCFDDFI-SASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAH 592 (732)
Q Consensus 527 ~~----------~~~~~~~~~---~~~~~~D~~-~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~ 592 (732)
.. |+....... .....+++. ++++++.++--+|++||+|+|+|+||++++.++.++|++|+++|+.
T Consensus 93 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~ 172 (282)
T 3fcx_A 93 EDESWDFGTGAGFYVDATEDPWKTNYRMYSYVTEELPQLINANFPVDPQRMSIFGHSMGGHGALICALKNPGKYKSVSAF 172 (282)
T ss_dssp ------CCCCCCTTCBCCSTTHHHHCBHHHHHHTHHHHHHHHHSSEEEEEEEEEEETHHHHHHHHHHHTSTTTSSCEEEE
T ss_pred ccccccccCCcccccccCcccccchhhHHHHHHHHHHHHHHHHcCCCccceEEEEECchHHHHHHHHHhCcccceEEEEe
Confidence 43 121111000 001233344 3444444343478999999999999999999999999999999999
Q ss_pred CCcccccccccCCCCCccccccCCCCCHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchH--HHH
Q 004766 593 VGVMDMLRYHKFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLH--SLK 670 (732)
Q Consensus 593 ~p~~d~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~--~~~ 670 (732)
+|+.++....... ..+...+|.... .+..++|...+.... .+.+|+||+||++|..||+.+ +.+
T Consensus 173 s~~~~~~~~~~~~--~~~~~~~~~~~~-----~~~~~~~~~~~~~~~-------~~~~p~li~~G~~D~~v~~~~~~~~~ 238 (282)
T 3fcx_A 173 APICNPVLCPWGK--KAFSGYLGTDQS-----KWKAYDATHLVKSYP-------GSQLDILIDQGKDDQFLLDGQLLPDN 238 (282)
T ss_dssp SCCCCGGGSHHHH--HHHHHHHC---C-----CGGGGCHHHHHTTCC----------CCEEEEEETTCHHHHTTSSCHHH
T ss_pred CCccCcccCchhH--HHHHHhcCCchh-----hhhhcCHHHHHHhcc-------cCCCcEEEEcCCCCcccccchhhHHH
Confidence 9988754311000 001111222100 112345544333310 157899999999999997666 669
Q ss_pred HHHHHHHhhcCCCCCCCCCCCEEEEEeCCCCCCCCCchHHHHHHHHHHHHHHHHHhC
Q 004766 671 LLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLG 727 (732)
Q Consensus 671 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 727 (732)
++++|+++ +.++++++++++||.+.. ........+.|+.++|.
T Consensus 239 ~~~~l~~~----------g~~~~~~~~~g~~H~~~~----~~~~~~~~~~~~~~~l~ 281 (282)
T 3fcx_A 239 FIAACTEK----------KIPVVFRLQEDYDHSYYF----IATFITDHIRHHAKYLN 281 (282)
T ss_dssp HHHHHHHT----------TCCEEEEEETTCCSSHHH----HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHc----------CCceEEEECCCCCcCHHH----HHhhhHHHHHHHHHhhc
Confidence 99999988 899999999999998742 23455677889888875
|
| >3e4d_A Esterase D; S-formylglutathione hydrolase, hydrolase fold family, catalytic triad, kinetics, proposed reaction mechanism; HET: MSE; 2.01A {Agrobacterium tumefaciens} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=99.86 E-value=6.6e-22 Score=202.04 Aligned_cols=247 Identities=12% Similarity=0.054 Sum_probs=166.7
Q ss_pred eEEEEEEEc-cCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCch-
Q 004766 450 HVHQVFVPS-KDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGE- 527 (732)
Q Consensus 450 ~~~~~~~~s-~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~- 527 (732)
..+.+.+.+ .+| .++++.++.|++.. +++.|+||++||+.+.............+++++||+|+++|.||.|....
T Consensus 14 ~~~~~~~~s~~~g-~~~~~~v~~P~~~~-~~~~p~vv~lHG~~~~~~~~~~~~~~~~~~~~~g~~vv~~d~~g~G~s~~~ 91 (278)
T 3e4d_A 14 MQGVFSHQSETLK-SEMTFAVYVPPKAI-HEPCPVVWYLSGLTCTHANVMEKGEYRRMASELGLVVVCPDTSPRGNDVPD 91 (278)
T ss_dssp EEEEEEEEETTTT-EEEEEEEEECGGGG-TSCEEEEEEECCTTCCSHHHHHHSCCHHHHHHHTCEEEECCSSCCSTTSCC
T ss_pred cEEEEEEeccccC-CcceEEEEcCCCCC-CCCCCEEEEEcCCCCCccchhhcccHHHHHhhCCeEEEecCCcccCccccc
Confidence 445555644 578 99999999998754 57899999999987654321111113456676799999999998765321
Q ss_pred -----------hHHhccccc--CCccHHHHHH--HHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEc
Q 004766 528 -----------EWHKGGALA--KKQNCFDDFI--SASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAH 592 (732)
Q Consensus 528 -----------~~~~~~~~~--~~~~~~~D~~--~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~ 592 (732)
.|+...... .....+.+++ ++++++.+.--+|++|++|+|+|+||++++.++.++|++|+++|+.
T Consensus 92 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~ 171 (278)
T 3e4d_A 92 ELTNWQMGKGAGFYLDATEEPWSEHYQMYSYVTEELPALIGQHFRADMSRQSIFGHSMGGHGAMTIALKNPERFKSCSAF 171 (278)
T ss_dssp CTTCTTSBTTBCTTSBCCSTTTTTTCBHHHHHHTHHHHHHHHHSCEEEEEEEEEEETHHHHHHHHHHHHCTTTCSCEEEE
T ss_pred ccccccccCCccccccCCcCcccchhhHHHHHHHHHHHHHHhhcCCCcCCeEEEEEChHHHHHHHHHHhCCcccceEEEe
Confidence 111111110 0111233333 3566666664578899999999999999999999999999999999
Q ss_pred CCcccccccccCCCCCccccccCCCCCHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchH-HHHH
Q 004766 593 VGVMDMLRYHKFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLH-SLKL 671 (732)
Q Consensus 593 ~p~~d~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~-~~~~ 671 (732)
+|++++..... .. ..+...+|.. ... +..++|...+... ...+|+||+||++|..|+... +.++
T Consensus 172 ~~~~~~~~~~~-~~-~~~~~~~~~~--~~~---~~~~~~~~~~~~~--------~~~~p~li~~G~~D~~v~~~~~~~~~ 236 (278)
T 3e4d_A 172 APIVAPSSADW-SE-PALEKYLGAD--RAA---WRRYDACSLVEDG--------ARFPEFLIDQGKADSFLEKGLRPWLF 236 (278)
T ss_dssp SCCSCGGGCTT-TH-HHHHHHHCSC--GGG---GGGGCHHHHHHTT--------CCCSEEEEEEETTCTTHHHHTCTHHH
T ss_pred CCcccccCCcc-ch-hhHHHhcCCc--HHH---HHhcChhhHhhcC--------CCCCcEEEEecCCCcccccchhHHHH
Confidence 99887643210 00 0011122321 111 2344555554442 246799999999999998533 7899
Q ss_pred HHHHHHhhcCCCCCCCCCCCEEEEEeCCCCCCCCCchHHHHHHHHHHHHHHHHHhC
Q 004766 672 LATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLG 727 (732)
Q Consensus 672 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 727 (732)
+++|+++ |.+++++++++++|.+.. ........+.|+.++|+
T Consensus 237 ~~~l~~~----------g~~~~~~~~~g~~H~~~~----~~~~~~~~l~~~~~~l~ 278 (278)
T 3e4d_A 237 EEAIKGT----------DIGLTLRMHDRYDHSYYF----ISTFMDDHLKWHAERLG 278 (278)
T ss_dssp HHHHTTS----------SCEEEEEEETTCCSSHHH----HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHc----------CCCceEEEeCCCCcCHHH----HHHHHHHHHHHHHHhcC
Confidence 9999987 899999999999998632 23456678899998875
|
| >3ain_A 303AA long hypothetical esterase; carboxylesterase, thermophilic, dimer, archaea, R267G, hydro; 1.65A {Sulfolobus tokodaii} PDB: 3aio_A 3ail_A 3aik_A 3aim_A | Back alignment and structure |
|---|
Probab=99.86 E-value=4.9e-20 Score=192.37 Aligned_cols=237 Identities=15% Similarity=0.091 Sum_probs=167.4
Q ss_pred CCceEEEEEEEccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCcc-CCCCcChhHHHHHH-hcCcEEEEEcccCCCC
Q 004766 447 SEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNIS-VTPSFSVSRTILMR-HLGAVFCIANIRGGGE 524 (732)
Q Consensus 447 ~~~~~~~~~~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~-~~~~~~~~~~~~l~-~~G~~v~~~~~rG~g~ 524 (732)
....++.+.+++.+| .|++.++.|++ .++.|+||++|||.... ....|.. +...|+ +.||.|+++|+||.|+
T Consensus 61 ~~~~~~~~~i~~~~~--~i~~~iy~P~~---~~~~p~vv~~HGGg~~~g~~~~~~~-~~~~La~~~g~~Vv~~Dyrg~~~ 134 (323)
T 3ain_A 61 EVGKIEDITIPGSET--NIKARVYYPKT---QGPYGVLVYYHGGGFVLGDIESYDP-LCRAITNSCQCVTISVDYRLAPE 134 (323)
T ss_dssp CCSEEEEEEEECSSS--EEEEEEEECSS---CSCCCEEEEECCSTTTSCCTTTTHH-HHHHHHHHHTSEEEEECCCCTTT
T ss_pred CccEEEEEEecCCCC--eEEEEEEecCC---CCCCcEEEEECCCccccCChHHHHH-HHHHHHHhcCCEEEEecCCCCCC
Confidence 456788889988777 79999999976 36789999999975322 2233443 334454 3499999999999886
Q ss_pred CchhHHhcccccCCccHHHHHHHHHHHHHHcCC-C-CCCcEEEEecChhHHHHHHHHhhCCCee---eEEEEcCCccccc
Q 004766 525 YGEEWHKGGALAKKQNCFDDFISASEYLISAGY-T-QSRKLCIEGGSNGGLLVGACINQRPDLF---GCALAHVGVMDML 599 (732)
Q Consensus 525 ~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~-~-d~~~i~i~G~S~GG~l~~~~~~~~p~~f---~a~v~~~p~~d~~ 599 (732)
.. ....++|+.++++|+.+... . |++||+|+|+|+||.+++.++.++|+.. +++|+.+|+++..
T Consensus 135 ~~-----------~p~~~~d~~~~~~~l~~~~~~lgd~~~i~l~G~S~GG~lA~~~a~~~~~~~~~~~~~vl~~p~~~~~ 203 (323)
T 3ain_A 135 NK-----------FPAAVVDSFDALKWVYNNSEKFNGKYGIAVGGDSAGGNLAAVTAILSKKENIKLKYQVLIYPAVSFD 203 (323)
T ss_dssp SC-----------TTHHHHHHHHHHHHHHHTGGGGTCTTCEEEEEETHHHHHHHHHHHHHHHTTCCCSEEEEESCCCSCC
T ss_pred CC-----------CcchHHHHHHHHHHHHHhHHHhCCCceEEEEecCchHHHHHHHHHHhhhcCCCceeEEEEeccccCC
Confidence 42 23467999999999987631 1 7899999999999999999998888766 8999999988753
Q ss_pred ccccCCCCCccccccC-CC-CCHHHHHH-HH------------hcCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCC
Q 004766 600 RYHKFTIGHAWVSDFG-CS-EEEEEFYW-LI------------KYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVV 664 (732)
Q Consensus 600 ~~~~~~~~~~~~~~~g-~p-~~~~~~~~-~~------------~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~ 664 (732)
.... .+ .++. .+ -......+ .. ..+|+.. .. ...||+||++|++|..+
T Consensus 204 ~~~~-----~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~sp~~~--~l--------~~l~P~lii~G~~D~l~- 266 (323)
T 3ain_A 204 LITK-----SL-YDNGEGFFLTREHIDWFGQQYLRSFADLLDFRFSPILA--DL--------NDLPPALIITAEHDPLR- 266 (323)
T ss_dssp SCCH-----HH-HHHSSSSSSCHHHHHHHHHHHCSSGGGGGCTTTCGGGS--CC--------TTCCCEEEEEETTCTTH-
T ss_pred CCCc-----cH-HHhccCCCCCHHHHHHHHHHhCCCCcccCCcccCcccC--cc--------cCCCHHHEEECCCCccH-
Confidence 2210 00 0000 00 01111111 01 2345443 11 14579999999999987
Q ss_pred chHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeCCCCCCCCCc---hHHHHHHHHHHHHHHHHHhCC
Q 004766 665 PLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLP---TQKMIDEAADRYGFMAKMLGA 728 (732)
Q Consensus 665 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~---~~~~~~~~~~~~~fl~~~l~~ 728 (732)
.++.+++++|+++ +.+++++++++++|++... .....+....+.+||.++|+.
T Consensus 267 -~~~~~~a~~l~~a----------g~~~~~~~~~g~~H~~~~~~~~~~~~~~~~~~i~~fl~~~l~~ 322 (323)
T 3ain_A 267 -DQGEAYANKLLQS----------GVQVTSVGFNNVIHGFVSFFPFIEQGRDAIGLIGYVLRKVFYG 322 (323)
T ss_dssp -HHHHHHHHHHHHT----------TCCEEEEEETTCCTTGGGGTTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred -HHHHHHHHHHHHc----------CCCEEEEEECCCccccccccCcCHHHHHHHHHHHHHHHHHhcC
Confidence 4889999999988 8999999999999997641 122356777889999988753
|
| >2hm7_A Carboxylesterase; alpha/beta hydrolase fold, hydrolase; 2.00A {Alicyclobacillus acidocaldarius} PDB: 1evq_A* 1u4n_A 1qz3_A | Back alignment and structure |
|---|
Probab=99.86 E-value=1.5e-20 Score=195.32 Aligned_cols=240 Identities=12% Similarity=0.059 Sum_probs=167.4
Q ss_pred CCceEEEEEEEccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCC-CCcChhHHHHHHhc-CcEEEEEcccCCCC
Q 004766 447 SEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVT-PSFSVSRTILMRHL-GAVFCIANIRGGGE 524 (732)
Q Consensus 447 ~~~~~~~~~~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~-~~~~~~~~~~l~~~-G~~v~~~~~rG~g~ 524 (732)
....++.+.+++.+| +|++.++.|++. .++.|+||++|||...... ..|.. +...|+++ ||.|+.+|+||.|+
T Consensus 44 ~~~~~~~~~i~~~~g--~l~~~~~~P~~~--~~~~p~vv~~HGGg~~~g~~~~~~~-~~~~la~~~g~~v~~~d~rg~~~ 118 (310)
T 2hm7_A 44 PVAEVREFDMDLPGR--TLKVRMYRPEGV--EPPYPALVYYHGGSWVVGDLETHDP-VCRVLAKDGRAVVFSVDYRLAPE 118 (310)
T ss_dssp CCSEEEEEEEEETTE--EEEEEEEECTTC--CSSEEEEEEECCSTTTSCCTTTTHH-HHHHHHHHHTSEEEEECCCCTTT
T ss_pred CcceEEEEEeccCCC--eEEEEEEecCCC--CCCCCEEEEECCCccccCChhHhHH-HHHHHHHhcCCEEEEeCCCCCCC
Confidence 345778888988766 899999999863 3678999999997533222 33433 34445444 99999999999886
Q ss_pred CchhHHhcccccCCccHHHHHHHHHHHHHHcC---CCCCCcEEEEecChhHHHHHHHHhhCCC----eeeEEEEcCCccc
Q 004766 525 YGEEWHKGGALAKKQNCFDDFISASEYLISAG---YTQSRKLCIEGGSNGGLLVGACINQRPD----LFGCALAHVGVMD 597 (732)
Q Consensus 525 ~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~---~~d~~~i~i~G~S~GG~l~~~~~~~~p~----~f~a~v~~~p~~d 597 (732)
.. .....+|+.++++|+.+.. .+|+++|+++|+|+||.+++.++.++|+ .++++|+.+|+.+
T Consensus 119 ~~-----------~~~~~~d~~~~~~~l~~~~~~~~~~~~~i~l~G~S~GG~la~~~a~~~~~~~~~~v~~~vl~~p~~~ 187 (310)
T 2hm7_A 119 HK-----------FPAAVEDAYDALQWIAERAADFHLDPARIAVGGDSAGGNLAAVTSILAKERGGPALAFQLLIYPSTG 187 (310)
T ss_dssp SC-----------TTHHHHHHHHHHHHHHHTTGGGTEEEEEEEEEEETHHHHHHHHHHHHHHHTTCCCCCCEEEESCCCC
T ss_pred CC-----------CCccHHHHHHHHHHHHhhHHHhCCCcceEEEEEECHHHHHHHHHHHHHHhcCCCCceEEEEEcCCcC
Confidence 42 2345789999999998874 3578999999999999999999988776 6999999999887
Q ss_pred ccccccCCCCCccccccC-CC-CCHHHHHHH-H------------hcCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCC
Q 004766 598 MLRYHKFTIGHAWVSDFG-CS-EEEEEFYWL-I------------KYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDR 662 (732)
Q Consensus 598 ~~~~~~~~~~~~~~~~~g-~p-~~~~~~~~~-~------------~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~ 662 (732)
...... ...+ .++. .+ .......++ . ..+|.....- ...+|+||+||.+|..
T Consensus 188 ~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l---------~~~~P~lii~G~~D~~ 254 (310)
T 2hm7_A 188 YDPAHP---PASI-EENAEGYLLTGGMMLWFRDQYLNSLEELTHPWFSPVLYPDL---------SGLPPAYIATAQYDPL 254 (310)
T ss_dssp CCTTSC---CHHH-HHTSSSSSSCHHHHHHHHHHHCSSGGGGGCTTTCGGGCSCC---------TTCCCEEEEEEEECTT
T ss_pred CCcccC---Ccch-hhcCCCCCCCHHHHHHHHHHhCCCCCccCCccCCCCcCccc---------cCCCCEEEEEecCCCc
Confidence 641110 0000 0010 00 111111111 1 1234332111 1346999999999998
Q ss_pred CCchHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeCCCCCCCCCc---hHHHHHHHHHHHHHHHHHhC
Q 004766 663 VVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLP---TQKMIDEAADRYGFMAKMLG 727 (732)
Q Consensus 663 v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~---~~~~~~~~~~~~~fl~~~l~ 727 (732)
+ .++.+++++|+++ |.++++++++++||++... ..+..+....+.+||.++|+
T Consensus 255 ~--~~~~~~~~~l~~~----------g~~~~~~~~~g~~H~~~~~~~~~~~~~~~~~~i~~fl~~~l~ 310 (310)
T 2hm7_A 255 R--DVGKLYAEALNKA----------GVKVEIENFEDLIHGFAQFYSLSPGATKALVRIAEKLRDALA 310 (310)
T ss_dssp H--HHHHHHHHHHHHT----------TCCEEEEEEEEEETTGGGGTTTCHHHHHHHHHHHHHHHHHHC
T ss_pred h--HHHHHHHHHHHHC----------CCCEEEEEeCCCccchhhhcccChHHHHHHHHHHHHHHHHhC
Confidence 7 6899999999987 8899999999999987531 12234667788999998874
|
| >3hlk_A Acyl-coenzyme A thioesterase 2, mitochondrial; alpha/beta hydrolase, alternative splicing, hydrolase, mitochondrion, polymorphism, serine esterase; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.9e-20 Score=204.34 Aligned_cols=222 Identities=15% Similarity=0.090 Sum_probs=158.4
Q ss_pred eEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCccHHH
Q 004766 464 KIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFD 543 (732)
Q Consensus 464 ~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~ 543 (732)
.|++.++.|++ .++.|+||++||+.+.. +. .+..+|+++||+|+++|+||.++.+.. .....++
T Consensus 160 ~l~~~l~~P~~---~~~~P~Vv~lhG~~~~~----~~-~~a~~La~~Gy~Vla~D~rG~~~~~~~--------~~~~~~~ 223 (446)
T 3hlk_A 160 RVRGTLFLPPE---PGPFPGIVDMFGTGGGL----LE-YRASLLAGKGFAVMALAYYNYEDLPKT--------METLHLE 223 (446)
T ss_dssp TEEEEEEECSS---SCCBCEEEEECCSSCSC----CC-HHHHHHHTTTCEEEEECCSSSTTSCSC--------CSEEEHH
T ss_pred eEEEEEEeCCC---CCCCCEEEEECCCCcch----hh-HHHHHHHhCCCEEEEeccCCCCCCCcc--------hhhCCHH
Confidence 68999999976 36789999999986642 22 235667779999999999998765432 1224589
Q ss_pred HHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCcccccccc----c-----CC---------
Q 004766 544 DFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYH----K-----FT--------- 605 (732)
Q Consensus 544 D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~----~-----~~--------- 605 (732)
|+.+++++|.++..+|+++|+++|+|+||.+++.++.++|+ ++++|+.+|........ . ..
T Consensus 224 d~~~a~~~l~~~~~vd~~~i~l~G~S~GG~lAl~~A~~~p~-v~a~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (446)
T 3hlk_A 224 YFEEAMNYLLSHPEVKGPGVGLLGISKGGELCLSMASFLKG-ITAAVVINGSVANVGGTLRYKGETLPPVGVNRNRIKVT 302 (446)
T ss_dssp HHHHHHHHHHTSTTBCCSSEEEEEETHHHHHHHHHHHHCSC-EEEEEEESCCSBCCSSEEEETTEEECCCCBCGGGCEEC
T ss_pred HHHHHHHHHHhCCCCCCCCEEEEEECHHHHHHHHHHHhCCC-ceEEEEEcCcccccCCCccccCccCCccccchhccccc
Confidence 99999999999988899999999999999999999999998 88998888865321100 0 00
Q ss_pred -CC-CccccccCCCCCHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHH-HHHHHHHHHhhcCC
Q 004766 606 -IG-HAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHS-LKLLATMQYVLCTS 682 (732)
Q Consensus 606 -~~-~~~~~~~g~p~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~-~~~~~~l~~~~~~~ 682 (732)
.+ ..+...+..+.... .......+.+ +.+|+|++||.+|..||+.+. ..++++|+++
T Consensus 303 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~~----------i~~PvLii~G~~D~~vp~~~~~~~~~~~l~~~---- 362 (446)
T 3hlk_A 303 KDGYADIVDVLNSPLEGP------DQKSFIPVER----------AESTFLFLVGQDDHNWKSEFYANEACKRLQAH---- 362 (446)
T ss_dssp SSSCEECTTCBCCTTSGG------GGGGBCCGGG----------CCSEEEEEEETTCCSSCHHHHHHHHHHHHHHT----
T ss_pred cchHHHHHHHHhchhhcc------ccccccCHHH----------CCCCEEEEEeCCCCCcChHHHHHHHHHHHHHc----
Confidence 00 00111122221110 0011112232 678999999999999999664 7899999987
Q ss_pred CCCCCCCCC-EEEEEeCCCCCCCCC--------------------------chHHHHHHHHHHHHHHHHHhCC
Q 004766 683 LENSPQTNP-IIGRIERKAGHGVGL--------------------------PTQKMIDEAADRYGFMAKMLGA 728 (732)
Q Consensus 683 ~~~~~~~~~-~~~~~~~~~gH~~~~--------------------------~~~~~~~~~~~~~~fl~~~l~~ 728 (732)
+.+ +++++++++||++.. ......+.+..+.+||.++|+.
T Consensus 363 ------g~~~~~l~~~pgagH~~~~p~~P~~~~~~~~~~~~~~~~gG~~~~~~~a~~~~~~~i~~Fl~~~L~~ 429 (446)
T 3hlk_A 363 ------GRRKPQIICYPETGHYIEPPYFPLCRASLHALVGSPIIWGGEPRAHAMAQVDAWKQLQTFFHKHLGG 429 (446)
T ss_dssp ------TCCCCEEEEETTBCSCCCSTTCCCCCBC-------CBBCCBCHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred ------CCCCcEEEEECCCCCeECCCCCCCChhhcccccCceEeeCCccHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 777 899999999999831 1112356788999999999975
|
| >1lzl_A Heroin esterase; alpha/beta hydrolase; 1.30A {Rhodococcus SP} SCOP: c.69.1.2 PDB: 1lzk_A | Back alignment and structure |
|---|
Probab=99.86 E-value=1.2e-20 Score=197.22 Aligned_cols=242 Identities=17% Similarity=0.137 Sum_probs=169.2
Q ss_pred CCceEEEEEEEccCCCe-eEEEEEEEcCCCCCCCCccEEEEEcCCCCccCC-CCcChhHHHHHHhcCcEEEEEcccCCCC
Q 004766 447 SEFHVHQVFVPSKDGST-KIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVT-PSFSVSRTILMRHLGAVFCIANIRGGGE 524 (732)
Q Consensus 447 ~~~~~~~~~~~s~dG~~-~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~-~~~~~~~~~~l~~~G~~v~~~~~rG~g~ 524 (732)
..+.++.+.+++.+| . +|++.++.|++. .++.|+||++|||...... ..|......+..+.||.|+.+|+||.|+
T Consensus 47 ~~~~~~~~~i~~~~g-~~~l~~~~~~P~~~--~~~~p~vv~~HGgg~~~g~~~~~~~~~~~la~~~G~~Vv~~d~rg~~~ 123 (323)
T 1lzl_A 47 DGVSLRELSAPGLDG-DPEVKIRFVTPDNT--AGPVPVLLWIHGGGFAIGTAESSDPFCVEVARELGFAVANVEYRLAPE 123 (323)
T ss_dssp TTEEEEEEEECCSTT-CCCEEEEEEEESSC--CSCEEEEEEECCSTTTSCCGGGGHHHHHHHHHHHCCEEEEECCCCTTT
T ss_pred CCceEEEEEecCCCC-CceeEEEEEecCCC--CCCCcEEEEECCCccccCChhhhHHHHHHHHHhcCcEEEEecCCCCCC
Confidence 356788899999999 7 899999999752 4678999999998632212 2333333444443599999999999886
Q ss_pred CchhHHhcccccCCccHHHHHHHHHHHHHHc---CCCCCCcEEEEecChhHHHHHHHHhhCCC----eeeEEEEcCCccc
Q 004766 525 YGEEWHKGGALAKKQNCFDDFISASEYLISA---GYTQSRKLCIEGGSNGGLLVGACINQRPD----LFGCALAHVGVMD 597 (732)
Q Consensus 525 ~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~---~~~d~~~i~i~G~S~GG~l~~~~~~~~p~----~f~a~v~~~p~~d 597 (732)
.. .....+|+.++++|+.+. -.+|++||+|+|+|+||++++.++.++|+ .++++|+.+|+.+
T Consensus 124 ~~-----------~~~~~~d~~~~~~~l~~~~~~~~~d~~~i~l~G~S~GG~la~~~a~~~~~~~~~~~~~~vl~~p~~~ 192 (323)
T 1lzl_A 124 TT-----------FPGPVNDCYAALLYIHAHAEELGIDPSRIAVGGQSAGGGLAAGTVLKARDEGVVPVAFQFLEIPELD 192 (323)
T ss_dssp SC-----------TTHHHHHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHHCSSCCCEEEEESCCCC
T ss_pred CC-----------CCchHHHHHHHHHHHHhhHHHcCCChhheEEEecCchHHHHHHHHHHHhhcCCCCeeEEEEECCccC
Confidence 42 234578999999999874 23678999999999999999999987766 4999999999987
Q ss_pred ccccccCCCCCccccccCC-C-CCHHH----HHHHH--------------hcCcccCCCCCCCCCCCCCCCCCeEEEEee
Q 004766 598 MLRYHKFTIGHAWVSDFGC-S-EEEEE----FYWLI--------------KYSPLHNVRRPWEQNPDKPFQYPSTLLLTA 657 (732)
Q Consensus 598 ~~~~~~~~~~~~~~~~~g~-p-~~~~~----~~~~~--------------~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g 657 (732)
...... . ..++.. + ..... ++.+. ..+|.....- ...||+||+||
T Consensus 193 ~~~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~---------~~~~P~li~~G 257 (323)
T 1lzl_A 193 DRLETV-----S-MTNFVDTPLWHRPNAILSWKYYLGESYSGPEDPDVSIYAAPSRATDL---------TGLPPTYLSTM 257 (323)
T ss_dssp TTCCSH-----H-HHHCSSCSSCCHHHHHHHHHHHHCTTCCCTTCSCCCTTTCGGGCSCC---------TTCCCEEEEEE
T ss_pred CCcCch-----h-HHHhccCCCCCHHHHHHHHHHhCCCCcccccccCCCcccCcccCccc---------CCCChhheEEC
Confidence 643211 0 000100 0 01111 11111 1233322111 13489999999
Q ss_pred CCCCCCCchHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeCCCCCCCCCc--hHHHHHHHHHHHHHHHHHhCCC
Q 004766 658 DHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLP--TQKMIDEAADRYGFMAKMLGAS 729 (732)
Q Consensus 658 ~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~--~~~~~~~~~~~~~fl~~~l~~~ 729 (732)
++|..+ .++.+++++|+++ |.++++++++++||++... .....+....+.+||.++++..
T Consensus 258 ~~D~~~--~~~~~~~~~l~~~----------g~~~~~~~~~g~~H~~~~~~~~~~~~~~~~~i~~fl~~~l~~~ 319 (323)
T 1lzl_A 258 ELDPLR--DEGIEYALRLLQA----------GVSVELHSFPGTFHGSALVATAAVSERGAAEALTAIRRGLRSL 319 (323)
T ss_dssp TTCTTH--HHHHHHHHHHHHT----------TCCEEEEEETTCCTTGGGSTTSHHHHHHHHHHHHHHHHHTCC-
T ss_pred CcCCch--HHHHHHHHHHHHc----------CCCEEEEEeCcCccCcccCccCHHHHHHHHHHHHHHHHHhccC
Confidence 999987 5889999999988 8999999999999986421 1223467778999999998743
|
| >1zi8_A Carboxymethylenebutenolidase; alpha and beta proteins, 3-D structure, serine esterase, HYD aromatic hydrocarbons, catabolism; 1.40A {Pseudomonas putida} PDB: 1zj5_A* 1zi9_A 1zi6_A 1zj4_A* 1din_A 1ziy_A* 1zic_A 1zix_A 1ggv_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=3.4e-21 Score=191.32 Aligned_cols=212 Identities=14% Similarity=0.112 Sum_probs=157.0
Q ss_pred EEEEccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhc-
Q 004766 454 VFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKG- 532 (732)
Q Consensus 454 ~~~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~- 532 (732)
+.+++.|| .+++++++.|++ ++.|+||++||..+... .|. .+...|+++||.|+++|+||.|+.+..+...
T Consensus 6 ~~~~~~~g-~~l~~~~~~p~~----~~~p~vv~~hG~~~~~~--~~~-~~~~~l~~~g~~v~~~d~~g~g~s~~~~~~~~ 77 (236)
T 1zi8_A 6 ISIQSYDG-HTFGALVGSPAK----APAPVIVIAQDIFGVNA--FMR-ETVSWLVDQGYAAVCPDLYARQAPGTALDPQD 77 (236)
T ss_dssp CCEECTTS-CEECEEEECCSS----CSEEEEEEECCTTBSCH--HHH-HHHHHHHHTTCEEEEECGGGGTSTTCBCCTTC
T ss_pred EEEecCCC-CeEEEEEECCCC----CCCCEEEEEcCCCCCCH--HHH-HHHHHHHhCCcEEEeccccccCCCcccccccc
Confidence 45778899 999999998874 57899999999876532 232 3455666689999999999988664311000
Q ss_pred ----------ccccCCccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCcccccccc
Q 004766 533 ----------GALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYH 602 (732)
Q Consensus 533 ----------~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~ 602 (732)
..........+|+.+++++|.++..++ ++++++|+|+||.+++.++.++| ++++|+..|....
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~-~~i~l~G~S~Gg~~a~~~a~~~~--~~~~v~~~~~~~~---- 150 (236)
T 1zi8_A 78 ERQREQAYKLWQAFDMEAGVGDLEAAIRYARHQPYSN-GKVGLVGYSLGGALAFLVASKGY--VDRAVGYYGVGLE---- 150 (236)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTSSTTEE-EEEEEEEETHHHHHHHHHHHHTC--SSEEEEESCSSGG----
T ss_pred hhhhhhhhhhhhccCcchhhHHHHHHHHHHHhccCCC-CCEEEEEECcCHHHHHHHhccCC--ccEEEEecCcccc----
Confidence 001112334789999999998876544 69999999999999999999988 8888877663211
Q ss_pred cCCCCCccccccCCCCCHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhcCC
Q 004766 603 KFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTS 682 (732)
Q Consensus 603 ~~~~~~~~~~~~g~p~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~ 682 (732)
++...+.+ +.+|+|+++|.+|..||+.++.+++++++..
T Consensus 151 ---------------------------~~~~~~~~----------~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~---- 189 (236)
T 1zi8_A 151 ---------------------------KQLNKVPE----------VKHPALFHMGGQDHFVPAPSRQLITEGFGAN---- 189 (236)
T ss_dssp ---------------------------GCGGGGGG----------CCSCEEEEEETTCTTSCHHHHHHHHHHHTTC----
T ss_pred ---------------------------cchhhhhh----------cCCCEEEEecCCCCCCCHHHHHHHHHHHHhC----
Confidence 11122222 5789999999999999999999999998754
Q ss_pred CCCCCCCCCEEEEEeCCCCCCCCCch------HHHHHHHHHHHHHHHHHhCC
Q 004766 683 LENSPQTNPIIGRIERKAGHGVGLPT------QKMIDEAADRYGFMAKMLGA 728 (732)
Q Consensus 683 ~~~~~~~~~~~~~~~~~~gH~~~~~~------~~~~~~~~~~~~fl~~~l~~ 728 (732)
+ ++++++++++||++.... ....+....+.+||.++|..
T Consensus 190 ------~-~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~~~i~~fl~~~l~~ 234 (236)
T 1zi8_A 190 ------P-LLQVHWYEEAGHSFARTGSSGYVASAAALANERTLDFLVPLQSR 234 (236)
T ss_dssp ------T-TEEEEEETTCCTTTTCTTSTTCCHHHHHHHHHHHHHHHGGGCC-
T ss_pred ------C-CceEEEECCCCcccccCCCCccCHHHHHHHHHHHHHHHHHhcCC
Confidence 4 789999999999876432 11245667889999998864
|
| >2o2g_A Dienelactone hydrolase; YP_324580.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.92A {Anabaena variabilis} | Back alignment and structure |
|---|
Probab=99.85 E-value=2.7e-20 Score=182.85 Aligned_cols=215 Identities=15% Similarity=0.116 Sum_probs=158.2
Q ss_pred CceEEEEEEEccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCch
Q 004766 448 EFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGE 527 (732)
Q Consensus 448 ~~~~~~~~~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~ 527 (732)
.+..+.+.+++ +| .+++++++.|++ +.|+||++||+.+....+.+. .+...|+++||.|+++|+||.|....
T Consensus 9 ~~~~~~~~~~~-~g-~~l~~~~~~p~~-----~~p~vv~~hG~~~~~~~~~~~-~~~~~l~~~G~~v~~~d~~g~g~s~~ 80 (223)
T 2o2g_A 9 QPQEYAVSVSV-GE-VKLKGNLVIPNG-----ATGIVLFAHGSGSSRYSPRNR-YVAEVLQQAGLATLLIDLLTQEEEEI 80 (223)
T ss_dssp CCCEEEEEEEE-TT-EEEEEEEECCTT-----CCEEEEEECCTTCCTTCHHHH-HHHHHHHHHTCEEEEECSSCHHHHHH
T ss_pred CceeeEEEEec-CC-eEEEEEEecCCC-----CceEEEEecCCCCCCCccchH-HHHHHHHHCCCEEEEEcCCCcCCCCc
Confidence 45677788887 89 999999998864 579999999987665433332 34455666899999999998654322
Q ss_pred hHHhcccccCCccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCcccccccccCCCC
Q 004766 528 EWHKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIG 607 (732)
Q Consensus 528 ~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~ 607 (732)
..........-....+|+.++++++..+..+|+++++++|+|+||.+++.++.++|++++++|+..|..++..
T Consensus 81 ~~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~v~~~v~~~~~~~~~~------- 153 (223)
T 2o2g_A 81 DLRTRHLRFDIGLLASRLVGATDWLTHNPDTQHLKVGYFGASTGGGAALVAAAERPETVQAVVSRGGRPDLAP------- 153 (223)
T ss_dssp HHHHCSSTTCHHHHHHHHHHHHHHHHHCTTTTTSEEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCGGGCT-------
T ss_pred cchhhcccCcHHHHHHHHHHHHHHHHhCcCCCCCcEEEEEeCccHHHHHHHHHhCCCceEEEEEeCCCCCcCH-------
Confidence 2211000011123368899999999998888999999999999999999999999999999999988654310
Q ss_pred CccccccCCCCCHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhcCCCCCCC
Q 004766 608 HAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSP 687 (732)
Q Consensus 608 ~~~~~~~g~p~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~ 687 (732)
..+.+ +.+|+|+++|.+|..||.. ..+.+++.
T Consensus 154 -------------------------~~~~~----------~~~P~l~i~g~~D~~~~~~----~~~~~~~~--------- 185 (223)
T 2o2g_A 154 -------------------------SALPH----------VKAPTLLIVGGYDLPVIAM----NEDALEQL--------- 185 (223)
T ss_dssp -------------------------TTGGG----------CCSCEEEEEETTCHHHHHH----HHHHHHHC---------
T ss_pred -------------------------HHHhc----------CCCCEEEEEccccCCCCHH----HHHHHHhh---------
Confidence 11122 5679999999999988632 23445554
Q ss_pred CCCCEEEEEeCCCCCCCCCchHHHHHHHHHHHHHHHHHhC
Q 004766 688 QTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLG 727 (732)
Q Consensus 688 ~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 727 (732)
+.++++.+++++||.+..+.. ..+....+.+||.++|.
T Consensus 186 -~~~~~~~~~~~~~H~~~~~~~-~~~~~~~i~~fl~~~l~ 223 (223)
T 2o2g_A 186 -QTSKRLVIIPRASHLFEEPGA-LTAVAQLASEWFMHYLR 223 (223)
T ss_dssp -CSSEEEEEETTCCTTCCSTTH-HHHHHHHHHHHHHHHCC
T ss_pred -CCCeEEEEeCCCCcccCChHH-HHHHHHHHHHHHHHhcC
Confidence 567899999999999866443 24667788999998874
|
| >2hdw_A Hypothetical protein PA2218; alpha/beta hydrolase fold, structural genomics, PSI, structure initiative; 2.00A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.85 E-value=7.7e-21 Score=202.42 Aligned_cols=244 Identities=14% Similarity=0.070 Sum_probs=166.4
Q ss_pred CceEEEEEEEccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCch
Q 004766 448 EFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGE 527 (732)
Q Consensus 448 ~~~~~~~~~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~ 527 (732)
.+..+.+.+++.|| .+++++++.|++ .+.++.|+||++||+.+.. ..+...+...|+++||.|+++|+||.|+...
T Consensus 65 ~~~~~~~~~~~~~g-~~~~~~~~~p~~-~~~~~~p~vv~~hG~~~~~--~~~~~~~~~~l~~~G~~v~~~d~~g~g~s~~ 140 (367)
T 2hdw_A 65 KVEHRKVTFANRYG-ITLAADLYLPKN-RGGDRLPAIVIGGPFGAVK--EQSSGLYAQTMAERGFVTLAFDPSYTGESGG 140 (367)
T ss_dssp TEEEEEEEEECTTS-CEEEEEEEEESS-CCSSCEEEEEEECCTTCCT--TSHHHHHHHHHHHTTCEEEEECCTTSTTSCC
T ss_pred CceeEEEEEecCCC-CEEEEEEEeCCC-CCCCCCCEEEEECCCCCcc--hhhHHHHHHHHHHCCCEEEEECCCCcCCCCC
Confidence 35678899999999 999999999987 3356789999999987653 2333334555666999999999999886432
Q ss_pred hHHhcccccCCccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCccccccccc--CC
Q 004766 528 EWHKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHK--FT 605 (732)
Q Consensus 528 ~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~--~~ 605 (732)
.... ........+|+.+++++|.++..+|++|++++|+|+||.+++.++.++| .++++|+.+|+. +..... ..
T Consensus 141 ~~~~---~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p-~~~~~v~~~p~~-~~~~~~~~~~ 215 (367)
T 2hdw_A 141 QPRN---VASPDINTEDFSAAVDFISLLPEVNRERIGVIGICGWGGMALNAVAVDK-RVKAVVTSTMYD-MTRVMSKGYN 215 (367)
T ss_dssp SSSS---CCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEEEETHHHHHHHHHHHHCT-TCCEEEEESCCC-HHHHHHHTTT
T ss_pred cCcc---ccchhhHHHHHHHHHHHHHhCcCCCcCcEEEEEECHHHHHHHHHHhcCC-CccEEEEecccc-ccHHHhhhhc
Confidence 2110 1112346799999999999998888999999999999999999999988 588998888763 211000 00
Q ss_pred ---------------------------------CC---C---cc----cccc----C-CC--------CCHHHHHHHHhc
Q 004766 606 ---------------------------------IG---H---AW----VSDF----G-CS--------EEEEEFYWLIKY 629 (732)
Q Consensus 606 ---------------------------------~~---~---~~----~~~~----g-~p--------~~~~~~~~~~~~ 629 (732)
.. . .. ...| + .| ........+..+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (367)
T 2hdw_A 216 DSVTLEQRTRTLEQLGQQRWKDAESGTPAYQPPYNELKGGEAQFLVDYHDYYMTPRGYHPRAVNSGNAWTMTTPLSFMNM 295 (367)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHHHHHTSCCBCSCTTCCCSCCCHHHHHHHHHHTSTTTCCTTCSTTTCCCBTTTHHHHTTS
T ss_pred cccchHHHHHHHHHHHHHHHHHhccCCceeecCCCccccccccccCCccceeecccccCcccccccchhhhhhHHHhcCC
Confidence 00 0 00 0000 0 00 000112233445
Q ss_pred CcccCCCCCCCCCCCCCCCC-CeEEEEeeCCCCCCCchHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeCCCCCCCCCch
Q 004766 630 SPLHNVRRPWEQNPDKPFQY-PSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPT 708 (732)
Q Consensus 630 sp~~~~~~~~~~~~~~~~~~-~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~ 708 (732)
+|...+.+ +. +|+|++||.+|. ++.++.+++++ . +.++++++++++||......
T Consensus 296 ~~~~~~~~----------i~~~PvLii~G~~D~--~~~~~~~~~~~---~----------~~~~~~~~~~g~gH~~~~~~ 350 (367)
T 2hdw_A 296 PILTYIKE----------ISPRPILLIHGERAH--SRYFSETAYAA---A----------AEPKELLIVPGASHVDLYDR 350 (367)
T ss_dssp CSCTTGGG----------GTTSCEEEEEETTCT--THHHHHHHHHH---S----------CSSEEEEEETTCCTTHHHHC
T ss_pred ChhHhHHh----------hcCCceEEEecCCCC--CHHHHHHHHHh---C----------CCCeeEEEeCCCCeeeeecC
Confidence 56555554 67 899999999998 77777777765 3 67899999999999843211
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 004766 709 QKMIDEAADRYGFMAKML 726 (732)
Q Consensus 709 ~~~~~~~~~~~~fl~~~l 726 (732)
.. ......+.+||.++|
T Consensus 351 ~~-~~~~~~i~~fl~~~l 367 (367)
T 2hdw_A 351 LD-RIPFDRIAGFFDEHL 367 (367)
T ss_dssp TT-TSCHHHHHHHHHHHC
T ss_pred ch-hHHHHHHHHHHHhhC
Confidence 11 114567889998875
|
| >2c7b_A Carboxylesterase, ESTE1; carboxyesterase, thermophilic enzyme, hydrolase, HSL, alpha/beta hydrolase fold; 2.3A {Uncultured archaeon} | Back alignment and structure |
|---|
Probab=99.85 E-value=4e-20 Score=192.23 Aligned_cols=240 Identities=17% Similarity=0.137 Sum_probs=164.2
Q ss_pred CceEEEEEEEccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccC-CCCcChhHHHHHHhc-CcEEEEEcccCCCCC
Q 004766 448 EFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISV-TPSFSVSRTILMRHL-GAVFCIANIRGGGEY 525 (732)
Q Consensus 448 ~~~~~~~~~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~-~~~~~~~~~~~l~~~-G~~v~~~~~rG~g~~ 525 (732)
...++.+.+++.+| +|++.+++|++. ++.|+||++||+..... ...|. .+...|+++ ||.|+++|+||.|+.
T Consensus 45 ~~~~~~~~i~~~~g--~i~~~~~~p~~~---~~~p~vv~~HGgg~~~g~~~~~~-~~~~~la~~~g~~v~~~d~rg~g~~ 118 (311)
T 2c7b_A 45 IAETRDVHIPVSGG--SIRARVYFPKKA---AGLPAVLYYHGGGFVFGSIETHD-HICRRLSRLSDSVVVSVDYRLAPEY 118 (311)
T ss_dssp CSEEEEEEEEETTE--EEEEEEEESSSC---SSEEEEEEECCSTTTSCCTGGGH-HHHHHHHHHHTCEEEEECCCCTTTS
T ss_pred cceEEEEEecCCCC--cEEEEEEecCCC---CCCcEEEEECCCcccCCChhhhH-HHHHHHHHhcCCEEEEecCCCCCCC
Confidence 44678888988776 899999999762 45799999999862211 22333 334445534 999999999998864
Q ss_pred chhHHhcccccCCccHHHHHHHHHHHHHHcC---CCCCCcEEEEecChhHHHHHHHHhhCCC----eeeEEEEcCCcccc
Q 004766 526 GEEWHKGGALAKKQNCFDDFISASEYLISAG---YTQSRKLCIEGGSNGGLLVGACINQRPD----LFGCALAHVGVMDM 598 (732)
Q Consensus 526 g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~---~~d~~~i~i~G~S~GG~l~~~~~~~~p~----~f~a~v~~~p~~d~ 598 (732)
. .....+|+.++++|+.+.. .+|++||+++|+|+||++++.++.++|+ +++++|+.+|+.++
T Consensus 119 ~-----------~~~~~~d~~~~~~~l~~~~~~~~~d~~~i~l~G~S~GG~la~~~a~~~~~~~~~~~~~~vl~~p~~~~ 187 (311)
T 2c7b_A 119 K-----------FPTAVEDAYAALKWVADRADELGVDPDRIAVAGDSAGGNLAAVVSILDRNSGEKLVKKQVLIYPVVNM 187 (311)
T ss_dssp C-----------TTHHHHHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHTTCCCCSEEEEESCCCCC
T ss_pred C-----------CCccHHHHHHHHHHHHhhHHHhCCCchhEEEEecCccHHHHHHHHHHHHhcCCCCceeEEEECCccCC
Confidence 2 2345789999999998762 3578899999999999999999987776 59999999999884
Q ss_pred cccccCCCCCccccccCC-CCCHHHHHHH-------------HhcCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCC
Q 004766 599 LRYHKFTIGHAWVSDFGC-SEEEEEFYWL-------------IKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVV 664 (732)
Q Consensus 599 ~~~~~~~~~~~~~~~~g~-p~~~~~~~~~-------------~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~ 664 (732)
........ ..+ ..+.. +.......++ ...+|+...-. ..||+||+||++|..++
T Consensus 188 ~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~----------~~~P~lii~G~~D~~~~ 255 (311)
T 2c7b_A 188 TGVPTASL-VEF-GVAETTSLPIELMVWFGRQYLKRPEEAYDFKASPLLADLG----------GLPPALVVTAEYDPLRD 255 (311)
T ss_dssp SSCCCHHH-HHH-HHCTTCSSCHHHHHHHHHHHCSSTTGGGSTTTCGGGSCCT----------TCCCEEEEEETTCTTHH
T ss_pred ccccccCC-ccH-HHhccCCCCHHHHHHHHHHhCCCCccccCcccCccccccc----------CCCcceEEEcCCCCchH
Confidence 21110000 000 00000 0001111110 12344433111 34699999999999885
Q ss_pred chHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeCCCCCCCCCc---hHHHHHHHHHHHHHHHHHhCC
Q 004766 665 PLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLP---TQKMIDEAADRYGFMAKMLGA 728 (732)
Q Consensus 665 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~---~~~~~~~~~~~~~fl~~~l~~ 728 (732)
++..++++|+.. +.+++++++++++|++... ..+..+....+.+||.++++.
T Consensus 256 --~~~~~~~~l~~~----------g~~~~~~~~~g~~H~~~~~~~~~~~~~~~~~~i~~fl~~~l~~ 310 (311)
T 2c7b_A 256 --EGELYAYKMKAS----------GSRAVAVRFAGMVHGFVSFYPFVDAGREALDLAAASIRSGLQP 310 (311)
T ss_dssp --HHHHHHHHHHHT----------TCCEEEEEETTCCTTGGGGTTTCHHHHHHHHHHHHHHHHHTCC
T ss_pred --HHHHHHHHHHHC----------CCCEEEEEeCCCccccccccccCHHHHHHHHHHHHHHHHHhcC
Confidence 677888999887 8899999999999998521 122356777889999998864
|
| >2i3d_A AGR_C_3351P, hypothetical protein ATU1826; structural genomics, APC5865, hydrolase, PSI-2, protein STRU initiative; HET: MSE; 1.50A {Agrobacterium tumefaciens str} SCOP: c.69.1.36 | Back alignment and structure |
|---|
Probab=99.85 E-value=1.4e-19 Score=181.51 Aligned_cols=209 Identities=15% Similarity=0.095 Sum_probs=159.5
Q ss_pred EEEEEccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCC--CcChhHHHHHHhcCcEEEEEcccCCCCCchhHH
Q 004766 453 QVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTP--SFSVSRTILMRHLGAVFCIANIRGGGEYGEEWH 530 (732)
Q Consensus 453 ~~~~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~--~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~ 530 (732)
.+.+++.+| +|.++++.|++ ++.|+||++||..+..... .....+...|+++||.|+++|+||.|.....+
T Consensus 25 ~~~~~~~~g--~l~~~~~~p~~----~~~p~vv~~HG~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~g~G~s~~~~- 97 (249)
T 2i3d_A 25 EVIFNGPAG--RLEGRYQPSKE----KSAPIAIILHPHPQFGGTMNNQIVYQLFYLFQKRGFTTLRFNFRSIGRSQGEF- 97 (249)
T ss_dssp EEEEEETTE--EEEEEEECCSS----TTCCEEEEECCCGGGTCCTTSHHHHHHHHHHHHTTCEEEEECCTTSTTCCSCC-
T ss_pred EEEEECCCc--eEEEEEEcCCC----CCCCEEEEECCCcccCCCccchHHHHHHHHHHHCCCEEEEECCCCCCCCCCCC-
Confidence 888988777 79999887754 5679999999964322111 11123455666699999999999987643221
Q ss_pred hcccccCCccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCcccccccccCCCCCcc
Q 004766 531 KGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHAW 610 (732)
Q Consensus 531 ~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~~~ 610 (732)
......++|+.+++++|.+++. ++++++++|+|+||++++.++.++|+ ++++|+..|..+...
T Consensus 98 -----~~~~~~~~d~~~~i~~l~~~~~-~~~~i~l~G~S~Gg~~a~~~a~~~p~-v~~~v~~~~~~~~~~---------- 160 (249)
T 2i3d_A 98 -----DHGAGELSDAASALDWVQSLHP-DSKSCWVAGYSFGAWIGMQLLMRRPE-IEGFMSIAPQPNTYD---------- 160 (249)
T ss_dssp -----CSSHHHHHHHHHHHHHHHHHCT-TCCCEEEEEETHHHHHHHHHHHHCTT-EEEEEEESCCTTTSC----------
T ss_pred -----CCccchHHHHHHHHHHHHHhCC-CCCeEEEEEECHHHHHHHHHHhcCCC-ccEEEEEcCchhhhh----------
Confidence 1223456999999999998854 77899999999999999999999998 999999988765311
Q ss_pred ccccCCCCCHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhcCCCCCCCCCC
Q 004766 611 VSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTN 690 (732)
Q Consensus 611 ~~~~g~p~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~ 690 (732)
...+.. +..|+|+++|.+|..||+.++.++++++... .+.
T Consensus 161 ---------------------~~~~~~----------~~~P~lii~G~~D~~~~~~~~~~~~~~~~~~---------~~~ 200 (249)
T 2i3d_A 161 ---------------------FSFLAP----------CPSSGLIINGDADKVAPEKDVNGLVEKLKTQ---------KGI 200 (249)
T ss_dssp ---------------------CTTCTT----------CCSCEEEEEETTCSSSCHHHHHHHHHHHTTS---------TTC
T ss_pred ---------------------hhhhcc----------cCCCEEEEEcCCCCCCCHHHHHHHHHHHhhc---------cCC
Confidence 111222 6789999999999999999999999998752 156
Q ss_pred CEEEEEeCCCCCCCCCchHHHHHHHHHHHHHHHHHhCC
Q 004766 691 PIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLGA 728 (732)
Q Consensus 691 ~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~ 728 (732)
.+++++++++||.+.. . ..+....+.+||.+++..
T Consensus 201 ~~~~~~~~g~~H~~~~-~--~~~~~~~i~~fl~~~l~~ 235 (249)
T 2i3d_A 201 LITHRTLPGANHFFNG-K--VDELMGECEDYLDRRLNG 235 (249)
T ss_dssp CEEEEEETTCCTTCTT-C--HHHHHHHHHHHHHHHHTT
T ss_pred ceeEEEECCCCccccc-C--HHHHHHHHHHHHHHhcCC
Confidence 8999999999999863 2 235667789999998864
|
| >3k6k_A Esterase/lipase; alpha/beta hydrolase fold; 2.20A {Uncultured bacterium} PDB: 3dnm_A | Back alignment and structure |
|---|
Probab=99.85 E-value=3.2e-20 Score=193.90 Aligned_cols=232 Identities=15% Similarity=0.073 Sum_probs=157.9
Q ss_pred CceEEEEEEEccCCCeeEEEEEEEcCCCCCCCCccE-EEEEcCCCCccCC-CCcChhHHHHHHhcCcEEEEEcccCCCCC
Q 004766 448 EFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPC-LLYGYGGFNISVT-PSFSVSRTILMRHLGAVFCIANIRGGGEY 525 (732)
Q Consensus 448 ~~~~~~~~~~s~dG~~~i~~~~~~p~~~~~~~~~P~-vv~~hG~~~~~~~-~~~~~~~~~~l~~~G~~v~~~~~rG~g~~ 525 (732)
....+.+.+ +| +.+ ++|++. ++.|+ ||++|||...... ..|......++...||+|+++|+|++++.
T Consensus 57 ~~~~~~~~~---~g-~~~----~~p~~~---~~~~~~vv~~HGgg~~~g~~~~~~~~~~~la~~~g~~v~~~dyr~~~~~ 125 (322)
T 3k6k_A 57 GVELTLTDL---GG-VPC----IRQATD---GAGAAHILYFHGGGYISGSPSTHLVLTTQLAKQSSATLWSLDYRLAPEN 125 (322)
T ss_dssp TCEEEEEEE---TT-EEE----EEEECT---TCCSCEEEEECCSTTTSCCHHHHHHHHHHHHHHHTCEEEEECCCCTTTS
T ss_pred CceEEEEEE---CC-EeE----EecCCC---CCCCeEEEEEcCCcccCCChHHHHHHHHHHHHhcCCEEEEeeCCCCCCC
Confidence 445555544 67 666 466652 34445 9999998532222 22333234444435999999999998753
Q ss_pred chhHHhcccccCCccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCe----eeEEEEcCCccccccc
Q 004766 526 GEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDL----FGCALAHVGVMDMLRY 601 (732)
Q Consensus 526 g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~----f~a~v~~~p~~d~~~~ 601 (732)
. ....++|+.++++||.++ .+|+++|+|+|+|+||.+++.++.+.|+. ++++|+.+|++|+...
T Consensus 126 ~-----------~~~~~~d~~~a~~~l~~~-~~~~~~i~l~G~S~GG~la~~~a~~~~~~~~~~~~~~vl~~p~~~~~~~ 193 (322)
T 3k6k_A 126 P-----------FPAAVDDCVAAYRALLKT-AGSADRIIIAGDSAGGGLTTASMLKAKEDGLPMPAGLVMLSPFVDLTLS 193 (322)
T ss_dssp C-----------TTHHHHHHHHHHHHHHHH-HSSGGGEEEEEETHHHHHHHHHHHHHHHTTCCCCSEEEEESCCCCTTCC
T ss_pred C-----------CchHHHHHHHHHHHHHHc-CCCCccEEEEecCccHHHHHHHHHHHHhcCCCCceEEEEecCCcCcccC
Confidence 2 345689999999999988 45899999999999999999999887765 9999999999886432
Q ss_pred ccCCCCCcccccc-CCC-CCHHHHHHH------------HhcCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchH
Q 004766 602 HKFTIGHAWVSDF-GCS-EEEEEFYWL------------IKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLH 667 (732)
Q Consensus 602 ~~~~~~~~~~~~~-g~p-~~~~~~~~~------------~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~ 667 (732)
... +.... ..+ ........+ ...||+..... ..||+||+||++|.. ..+
T Consensus 194 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~----------~~pP~li~~G~~D~~--~~~ 256 (322)
T 3k6k_A 194 RWS-----NSNLADRDFLAEPDTLGEMSELYVGGEDRKNPLISPVYADLS----------GLPEMLIHVGSEEAL--LSD 256 (322)
T ss_dssp SHH-----HHHTGGGCSSSCHHHHHHHHHHHHTTSCTTCTTTCGGGSCCT----------TCCCEEEEEESSCTT--HHH
T ss_pred ccc-----hhhccCCCCcCCHHHHHHHHHHhcCCCCCCCCcCCccccccc----------CCCcEEEEECCcCcc--HHH
Confidence 110 00000 000 111111111 11355544332 568999999999986 468
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCCCEEEEEeCCCCCCCCCc---hHHHHHHHHHHHHHHHHHhCCC
Q 004766 668 SLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLP---TQKMIDEAADRYGFMAKMLGAS 729 (732)
Q Consensus 668 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~---~~~~~~~~~~~~~fl~~~l~~~ 729 (732)
+.+++++|+++ |++++++++++++|++... ..+..+....+.+||.++|+..
T Consensus 257 ~~~~~~~l~~~----------g~~~~l~~~~g~~H~~~~~~~~~~~~~~~~~~i~~fl~~~l~~~ 311 (322)
T 3k6k_A 257 STTLAERAGAA----------GVSVELKIWPDMPHVFQMYGKFVNAADISIKEICHWISARISKL 311 (322)
T ss_dssp HHHHHHHHHHT----------TCCEEEEEETTCCTTGGGGTTTCHHHHHHHHHHHHHHHTTCC--
T ss_pred HHHHHHHHHHC----------CCCEEEEEECCCccccccccccChHHHHHHHHHHHHHHHHHhcc
Confidence 99999999998 9999999999999997531 1233567788999999998754
|
| >3ksr_A Putative serine hydrolase; catalytic triad, structural genomics, JOIN for structural genomics, JCSG; 2.69A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.85 E-value=8.4e-21 Score=195.01 Aligned_cols=234 Identities=14% Similarity=0.145 Sum_probs=165.1
Q ss_pred eEEEEEEEccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhH
Q 004766 450 HVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEW 529 (732)
Q Consensus 450 ~~~~~~~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~ 529 (732)
..+.+.+++ +| .+|.++++.|+ +.|+||++||+.+... .|. .+...|.++||.|+++|+||.|+.....
T Consensus 5 ~~~~~~~~~-~g-~~l~~~~~~p~------~~p~vv~~HG~~~~~~--~~~-~~~~~l~~~g~~v~~~d~~G~g~s~~~~ 73 (290)
T 3ksr_A 5 KLSSIEIPV-GQ-DELSGTLLTPT------GMPGVLFVHGWGGSQH--HSL-VRAREAVGLGCICMTFDLRGHEGYASMR 73 (290)
T ss_dssp EEEEEEEEE-TT-EEEEEEEEEEE------SEEEEEEECCTTCCTT--TTH-HHHHHHHTTTCEEECCCCTTSGGGGGGT
T ss_pred ceeeEEecC-CC-eEEEEEEecCC------CCcEEEEeCCCCCCcC--cHH-HHHHHHHHCCCEEEEeecCCCCCCCCCc
Confidence 456677776 88 99999999986 5799999999887543 333 3456677689999999999988654432
Q ss_pred HhcccccCCccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCcccccccccCCC---
Q 004766 530 HKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTI--- 606 (732)
Q Consensus 530 ~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~--- 606 (732)
.. .......+|+.+++++|.++..+|+++|+++|+|+||++++.++.++| .+++++.+|............
T Consensus 74 ~~----~~~~~~~~d~~~~i~~l~~~~~~~~~~v~l~G~S~Gg~~a~~~a~~~~--~~~~~l~~p~~~~~~~~~~~~~~~ 147 (290)
T 3ksr_A 74 QS----VTRAQNLDDIKAAYDQLASLPYVDAHSIAVVGLSYGGYLSALLTRERP--VEWLALRSPALYKDAHWDQPKVSL 147 (290)
T ss_dssp TT----CBHHHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHTTTSC--CSEEEEESCCCCCSSCTTSBHHHH
T ss_pred cc----ccHHHHHHHHHHHHHHHHhcCCCCccceEEEEEchHHHHHHHHHHhCC--CCEEEEeCcchhhhhhhhcccccc
Confidence 11 111334689999999999988888999999999999999999999988 677777777664332111000
Q ss_pred --CCccccccCCCCCHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhcCCCC
Q 004766 607 --GHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLE 684 (732)
Q Consensus 607 --~~~~~~~~g~p~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~ 684 (732)
...+...+..+.... ..++...+.+ +.+|+|++||.+|..|++.++.++++.++..
T Consensus 148 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~----------~~~P~lii~G~~D~~v~~~~~~~~~~~~~~~------ 205 (290)
T 3ksr_A 148 NADPDLMDYRRRALAPG------DNLALAACAQ----------YKGDVLLVEAENDVIVPHPVMRNYADAFTNA------ 205 (290)
T ss_dssp HHSTTHHHHTTSCCCGG------GCHHHHHHHH----------CCSEEEEEEETTCSSSCHHHHHHHHHHTTTS------
T ss_pred cCChhhhhhhhhhhhhc------cccHHHHHHh----------cCCCeEEEEecCCcccChHHHHHHHHHhccC------
Confidence 000000011111100 0011111222 6779999999999999999999999988764
Q ss_pred CCCCCCCEEEEEeCCCCCCCCCchHHHHHHHHHHHHHHHHHhCC
Q 004766 685 NSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLGA 728 (732)
Q Consensus 685 ~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~ 728 (732)
+ ++++++++++||.+...... ......+.+||.++++.
T Consensus 206 ----~-~~~~~~~~~~gH~~~~~~~~-~~~~~~i~~fl~~~~~~ 243 (290)
T 3ksr_A 206 ----R-SLTSRVIAGADHALSVKEHQ-QEYTRALIDWLTEMVVG 243 (290)
T ss_dssp ----S-EEEEEEETTCCTTCCSHHHH-HHHHHHHHHHHHHHHHT
T ss_pred ----C-CceEEEcCCCCCCCCcchHH-HHHHHHHHHHHHHHhcC
Confidence 3 78999999999988665432 46667889999998754
|
| >4b6g_A Putative esterase; hydrolase, formaldehyde detoxification, alpha/beta serine HY; 1.40A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.7e-21 Score=199.70 Aligned_cols=247 Identities=10% Similarity=0.065 Sum_probs=160.2
Q ss_pred eEEEEEEEc-cCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEccc--CCCC--
Q 004766 450 HVHQVFVPS-KDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIR--GGGE-- 524 (732)
Q Consensus 450 ~~~~~~~~s-~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~r--G~g~-- 524 (732)
..+.+.+.| .+| .++++.++.|++.. +++.|+||++||+.+.............+++++|++|+++|.+ |.+.
T Consensus 21 ~~~~~~~~s~~~~-~~~~~~v~~P~~~~-~~~~p~vv~lHG~~~~~~~~~~~~~~~~~~~~~g~~vv~~d~~~rg~~~~~ 98 (283)
T 4b6g_A 21 SQQVWAHHAQTLQ-CEMKFAVYLPNNPE-NRPLGVIYWLSGLTCTEQNFITKSGFQRYAAEHQVIVVAPDTSPRGEQVPN 98 (283)
T ss_dssp EEEEEEEEETTTT-EEEEEEEEECCCTT-CCCEEEEEEECCTTCCSHHHHHHSCTHHHHHHHTCEEEEECSSCCSTTSCC
T ss_pred cEEEEEEechhhC-CceEEEEEeCCCCC-CCCCCEEEEEcCCCCCccchhhcccHHHHHhhCCeEEEEeccccccccccc
Confidence 344555544 478 99999999999864 5789999999998765432211112346677789999999964 4332
Q ss_pred -------CchhHHhcccccC--CccHHHHH-HHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCC
Q 004766 525 -------YGEEWHKGGALAK--KQNCFDDF-ISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVG 594 (732)
Q Consensus 525 -------~g~~~~~~~~~~~--~~~~~~D~-~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p 594 (732)
.|..|+....... ....+.++ ...+..+++..+.+++|++|+|+|+||++++.++.++|++|+++++.+|
T Consensus 99 ~~~~~~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~G~S~GG~~a~~~a~~~p~~~~~~~~~s~ 178 (283)
T 4b6g_A 99 DDAYDLGQSAGFYLNATEQPWAANYQMYDYILNELPRLIEKHFPTNGKRSIMGHSMGGHGALVLALRNQERYQSVSAFSP 178 (283)
T ss_dssp CSSTTSBTTBCTTSBCCSTTGGGTCBHHHHHHTHHHHHHHHHSCEEEEEEEEEETHHHHHHHHHHHHHGGGCSCEEEESC
T ss_pred cccccccCCCcccccCccCcccchhhHHHHHHHHHHHHHHHhCCCCCCeEEEEEChhHHHHHHHHHhCCccceeEEEECC
Confidence 2222222211110 01122332 3233333333344578999999999999999999999999999999999
Q ss_pred cccccccccCCCCCccccccCCCCCHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCc-hHHHHHHH
Q 004766 595 VMDMLRYHKFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVP-LHSLKLLA 673 (732)
Q Consensus 595 ~~d~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~-~~~~~~~~ 673 (732)
++++..... .. ..+...+|.. ... +..++|...++.. ...+|+||+||+.|..|+. .++.++++
T Consensus 179 ~~~~~~~~~-~~-~~~~~~~g~~--~~~---~~~~~~~~~~~~~--------~~~~p~li~~G~~D~~~~~~~~~~~~~~ 243 (283)
T 4b6g_A 179 ILSPSLVPW-GE-KAFTAYLGKD--REK---WQQYDANSLIQQG--------YKVQGMRIDQGLEDEFLPTQLRTEDFIE 243 (283)
T ss_dssp CCCGGGSHH-HH-HHHHHHHCSC--GGG---GGGGCHHHHHHHT--------CCCSCCEEEEETTCTTHHHHTCHHHHHH
T ss_pred ccccccCcc-hh-hhHHhhcCCc--hHH---HHhcCHHHHHHhc--------ccCCCEEEEecCCCccCcchhhHHHHHH
Confidence 887643110 00 0011122321 111 1234555444432 2457999999999999987 33899999
Q ss_pred HHHHhhcCCCCCCCCCCCEEEEEeCCCCCCCCCchHHHHHHHHHHHHHHHHHhC
Q 004766 674 TMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLG 727 (732)
Q Consensus 674 ~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 727 (732)
+|+++ |.+++++++++++|.+.. ........+.|+.++|.
T Consensus 244 ~l~~~----------g~~~~~~~~~g~~H~~~~----~~~~l~~~l~~~~~~l~ 283 (283)
T 4b6g_A 244 TCRAA----------NQPVDVRFHKGYDHSYYF----IASFIGEHIAYHAAFLK 283 (283)
T ss_dssp HHHHH----------TCCCEEEEETTCCSSHHH----HHHHHHHHHHHHHTTCC
T ss_pred HHHHc----------CCCceEEEeCCCCcCHhH----HHHHHHHHHHHHHHhcC
Confidence 99998 899999999999998632 23456678889888763
|
| >4e15_A Kynurenine formamidase; alpha/beta hydrolase fold, hydrolase-hydrolase inhibitor COM; HET: SEB; 1.50A {Drosophila melanogaster} PDB: 4e14_A* 4e11_A | Back alignment and structure |
|---|
Probab=99.84 E-value=1.1e-20 Score=195.58 Aligned_cols=215 Identities=12% Similarity=0.102 Sum_probs=153.2
Q ss_pred EEEEEEEccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHH
Q 004766 451 VHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWH 530 (732)
Q Consensus 451 ~~~~~~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~ 530 (732)
...+.|. + ..+++.++.|++. .++.|+||++|||............+...|+++||+|+++|+||.++..
T Consensus 58 ~~~i~y~---~-~~~~~~~~~p~~~--~~~~p~vv~~HGgg~~~~~~~~~~~~~~~l~~~G~~v~~~d~r~~~~~~---- 127 (303)
T 4e15_A 58 VDHLRYG---E-GRQLVDVFYSEKT--TNQAPLFVFVHGGYWQEMDMSMSCSIVGPLVRRGYRVAVMDYNLCPQVT---- 127 (303)
T ss_dssp EEEEECS---S-TTCEEEEEECTTC--CTTCCEEEEECCSTTTSCCGGGSCTTHHHHHHTTCEEEEECCCCTTTSC----
T ss_pred eeeeccC---C-CCcEEEEEecCCC--CCCCCEEEEECCCcCcCCChhHHHHHHHHHHhCCCEEEEecCCCCCCCC----
Confidence 3445554 4 4567788888753 4688999999998644333222222345555699999999999987642
Q ss_pred hcccccCCccHHHHHHHHHHHHHHc-CCCCCCcEEEEecChhHHHHHHHHhhCC-------CeeeEEEEcCCcccccccc
Q 004766 531 KGGALAKKQNCFDDFISASEYLISA-GYTQSRKLCIEGGSNGGLLVGACINQRP-------DLFGCALAHVGVMDMLRYH 602 (732)
Q Consensus 531 ~~~~~~~~~~~~~D~~~~~~~l~~~-~~~d~~~i~i~G~S~GG~l~~~~~~~~p-------~~f~a~v~~~p~~d~~~~~ 602 (732)
.....+|+.++++||.+. ...+++||+|+|+|+||++++.++.+.+ +.++++|+.+|+.|+....
T Consensus 128 -------~~~~~~d~~~~~~~l~~~~~~~~~~~i~l~G~S~GG~la~~~a~~~~~~~~p~~~~v~~~v~~~~~~~~~~~~ 200 (303)
T 4e15_A 128 -------LEQLMTQFTHFLNWIFDYTEMTKVSSLTFAGHXAGAHLLAQILMRPNVITAQRSKMVWALIFLCGVYDLRELS 200 (303)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHHTTCSCEEEEEETHHHHHHGGGGGCTTTSCHHHHHTEEEEEEESCCCCCHHHH
T ss_pred -------hhHHHHHHHHHHHHHHHHhhhcCCCeEEEEeecHHHHHHHHHHhccccccCcccccccEEEEEeeeeccHhhh
Confidence 123578999999999873 2345889999999999999999988644 3799999999999875543
Q ss_pred cCCCCCccccccCCCCCHHHHHHHHhcCcc-cCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhcC
Q 004766 603 KFTIGHAWVSDFGCSEEEEEFYWLIKYSPL-HNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCT 681 (732)
Q Consensus 603 ~~~~~~~~~~~~g~p~~~~~~~~~~~~sp~-~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~ 681 (732)
.... ......++.... .+...||+ ..+.... ..+.+|+||+||.+|..||+.++.+++++|+++
T Consensus 201 ~~~~-~~~~~~~~~~~~-----~~~~~sp~~~~~~~~~------~~~~~P~lii~G~~D~~v~~~~~~~~~~~l~~~--- 265 (303)
T 4e15_A 201 NLES-VNPKNILGLNER-----NIESVSPMLWEYTDVT------VWNSTKIYVVAAEHDSTTFIEQSRHYADVLRKK--- 265 (303)
T ss_dssp TCTT-TSGGGTTCCCTT-----TTTTTCGGGCCCCCGG------GGTTSEEEEEEEEESCHHHHHHHHHHHHHHHHH---
T ss_pred cccc-cchhhhhcCCHH-----HHHHcCchhhcccccc------cCCCCCEEEEEeCCCCCCchHHHHHHHHHHHHC---
Confidence 3110 111122332211 13456787 4554300 013899999999999999999999999999998
Q ss_pred CCCCCCCCCCEEEEEeCCCCCCC
Q 004766 682 SLENSPQTNPIIGRIERKAGHGV 704 (732)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~~gH~~ 704 (732)
|.++++++++++||+.
T Consensus 266 -------g~~~~~~~~~g~~H~~ 281 (303)
T 4e15_A 266 -------GYKASFTLFKGYDHFD 281 (303)
T ss_dssp -------TCCEEEEEEEEEETTH
T ss_pred -------CCceEEEEeCCCCchH
Confidence 8999999999999953
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.7e-18 Score=181.08 Aligned_cols=301 Identities=10% Similarity=0.070 Sum_probs=194.7
Q ss_pred HHhhcCCCCCCCcEEeCCEEEEEEEcC----CCCeeEEEEEeCCCCCceEEeCCCCcCCCCCEEEEeEEECCCCcEEEEE
Q 004766 74 ITKLFDSPRYDAPFKRGNKYFYFHNTG----LQPQSVLYVQDSLDAKAKVLLDPNTLSDDGTAALIKVSVSEDAKYLAYA 149 (732)
Q Consensus 74 ~~~~~~~~~~~~p~~~g~~~~~~~~~~----~~~~~~l~~r~~~~~~~~~l~D~~~l~~~~~~~~~~~~~SPDG~~la~~ 149 (732)
+++++..+.++.|..+|.+++|..... ......||+.+..+++.+.| . .+..++|||||++|||+
T Consensus 8 ~~~l~~~~~~~~~~~dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l---~--------~~~~~~~SpDg~~la~~ 76 (347)
T 2gop_A 8 EKTFAKFAYLSDPRTKGELVAYVLTKANLKDNKYENTIVIENLKNNARRFI---E--------NATMPRISPDGKKIAFM 76 (347)
T ss_dssp --CCCCSCEEEEEEEETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEEE---E--------SCEEEEECTTSSEEEEE
T ss_pred cccceeeEEcccceECCcEEEEEEeecCcccCCccceEEEEeCCCCceEEc---c--------cCCCeEECCCCCEEEEE
Confidence 345555566666666888888876432 22256789888666655554 1 13478999999999999
Q ss_pred EeccCCceEEEEEEECCCCceecccccceeeeeEEEEeCCcEEEEEEecCCCCC-------CCCC-CCCcccCCcccEEE
Q 004766 150 LSYSGSDWATIKLMRIEDQIVEADALSWFKFSSIAWTHDSKGFFYSRYPAPKEG-------KDMD-AGTETDSNLYHEFY 221 (732)
Q Consensus 150 ~~~~G~e~~~i~v~dl~~g~~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~-------~~~~-~~~~~~~~~~~~v~ 221 (732)
....+....+||++|+++|+....+.... ...++|||||+.|+|++.+.+... ..+. .+.........+||
T Consensus 77 ~~~~~~~~~~l~~~~~~~g~~~~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~ 155 (347)
T 2gop_A 77 RANEEKKVSEIWVADLETLSSKKILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFW 155 (347)
T ss_dssp EEETTTTEEEEEEEETTTTEEEEEEEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEE
T ss_pred EeccCCCcceEEEEECCCCceEEEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEE
Confidence 87765556799999999988554332222 578999999999999975421100 0000 00000001245799
Q ss_pred EEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCc----c-eEEEEEEeCCCCCCCcccccccCCCCCcE
Q 004766 222 YHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCD----P-VNKVYYCDLSALPEGLEGFKKRDGLLPFV 296 (732)
Q Consensus 222 ~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~----~-~~~l~~~d~~~~~~~~~~~~~~~~~~~~~ 296 (732)
++++.++... ..+.. + ....+.||||| +++....... . ..+||+++ ++. .+
T Consensus 156 ~~d~~~~~~~-~~l~~-~----~~~~~~~spdg--~~~~~~~~~~~~~~~~~~~l~~~d--~~~--------------~~ 211 (347)
T 2gop_A 156 IFDTESEEVI-EEFEK-P----RFSSGIWHRDK--IVVNVPHREIIPQYFKFWDIYIWE--DGK--------------EE 211 (347)
T ss_dssp EEETTTTEEE-EEEEE-E----TTCEEEEETTE--EEEEEECCCSSCCSSCCEEEEEEE--TTE--------------EE
T ss_pred EEECCCCeEE-eeecC-C----CcccccCCCCe--EEEEEecccccccccccccEEEeC--CCc--------------eE
Confidence 9999876430 12222 2 22468999999 6666543321 2 56899999 422 34
Q ss_pred EeeecccceEEEEEecCCeEEEEeCCCC----CCceEEEEeCCCCCCceEeccCCCCCceeE-EEEecCCEEEEEEecCC
Q 004766 297 KLIDGFDAQYEVIANDDTVFTFLTNKDA----PKYKIIRVDLKEPNDWFEVIPEAERDVLES-ATAVNLNQMIVSYLSDV 371 (732)
Q Consensus 297 ~l~~~~~~~~~~~s~dg~~l~~~s~~~~----~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~-~~~~~~~~l~~~~~~~g 371 (732)
.+..+ . ....++|||+.|++.++... ...+|+.+| ++. .+.+++.. +..+.. +.|+ ++ +++....++
T Consensus 212 ~l~~~-~-~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~-~~~l~~~~-~~~~~~~~~~s-dg-~~~~~~~~~ 283 (347)
T 2gop_A 212 KMFEK-V-SFYAVDSDGERILLYGKPEKKYMSEHNKLYIYD--GKE-VMGILDEV-DRGVGQAKIKD-GK-VYFTLFEEG 283 (347)
T ss_dssp EEEEE-E-SEEEEEECSSCEEEEECCSSSCCCSSCEEEEEC--SSC-EEESSTTC-CSEEEEEEEET-TE-EEEEEEETT
T ss_pred EeccC-c-ceeeECCCCCEEEEEEccccCCccccceEEEEC--CCc-eEeccccC-CcccCCccEEc-Cc-EEEEEecCC
Confidence 44444 2 23335999999999886532 356899999 444 46666543 345665 7777 56 888888888
Q ss_pred eeEEEEEeCCCCceeeecccccceeeEeecccCCcEEEEEEecCCCCceEEEEE
Q 004766 372 KYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCN 425 (732)
Q Consensus 372 ~~~l~~~d~~~g~~~~~l~~~~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d 425 (732)
..+|+ ++ . |+. ..+....+.+..+++++ .++++.++..+|.++|.+|
T Consensus 284 ~~~l~-~~-~-g~~-~~~~~~~~~v~~~~~s~---~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 284 SVNLY-IW-D-GEI-KPIAKGRHWIMGFDVDE---IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp EEEEE-EE-S-SSE-EEEECSSSEEEEEEESS---SEEEEEECSSSCCEEEEES
T ss_pred cEEEE-Ec-C-Cce-EEEecCCCeEEeeeeeC---cEEEEEcCCCChHHheEeC
Confidence 88888 87 4 765 44443466777788777 5888899999999999998
|
| >1jkm_A Brefeldin A esterase; serine hydrolase, degradation of brefeldin A, alpha/beta hydrolase family; 1.85A {Bacillus subtilis} SCOP: c.69.1.2 | Back alignment and structure |
|---|
Probab=99.84 E-value=1.5e-19 Score=191.93 Aligned_cols=246 Identities=15% Similarity=0.124 Sum_probs=164.7
Q ss_pred CceEEEEEEEccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCC---CcChhHHHHHHhcCcEEEEEcccCCCC
Q 004766 448 EFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTP---SFSVSRTILMRHLGAVFCIANIRGGGE 524 (732)
Q Consensus 448 ~~~~~~~~~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~---~~~~~~~~~l~~~G~~v~~~~~rG~g~ 524 (732)
.+..+.+.+.+.+| ..+.+.++.|++. .++.|+||++|||....... .|.. +...|+++||+|+.+|+||+|+
T Consensus 79 ~~~~~~~~~~~~~g-~~l~~~v~~p~~~--~~~~p~vv~iHGgg~~~g~~~~~~~~~-~~~~la~~g~~vv~~d~r~~gg 154 (361)
T 1jkm_A 79 DVETSTETILGVDG-NEITLHVFRPAGV--EGVLPGLVYTHGGGMTILTTDNRVHRR-WCTDLAAAGSVVVMVDFRNAWT 154 (361)
T ss_dssp CEEEEEEEEECTTS-CEEEEEEEEETTC--CSCEEEEEEECCSTTTSSCSSSHHHHH-HHHHHHHTTCEEEEEECCCSEE
T ss_pred CceeeeeeeecCCC-CeEEEEEEeCCCC--CCCCeEEEEEcCCccccCCCcccchhH-HHHHHHhCCCEEEEEecCCCCC
Confidence 35667788888899 8999999999863 23789999999986222222 2332 3344555999999999999874
Q ss_pred CchhHHhcccccCCccHHHHHHHHHHHHHHcC---CCCCCcEEEEecChhHHHHHHHHhh-----CCCeeeEEEEcCCcc
Q 004766 525 YGEEWHKGGALAKKQNCFDDFISASEYLISAG---YTQSRKLCIEGGSNGGLLVGACINQ-----RPDLFGCALAHVGVM 596 (732)
Q Consensus 525 ~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~---~~d~~~i~i~G~S~GG~l~~~~~~~-----~p~~f~a~v~~~p~~ 596 (732)
+. ........+.|+.++++|+.++- ..| +|+|+|+|+||.+++.++.+ .|++++++|+.+|+.
T Consensus 155 ~~-------~~~~~~~~~~D~~~~~~~v~~~~~~~~~~--~i~l~G~S~Gg~~a~~~a~~~~~~~~p~~i~~~il~~~~~ 225 (361)
T 1jkm_A 155 AE-------GHHPFPSGVEDCLAAVLWVDEHRESLGLS--GVVVQGESGGGNLAIATTLLAKRRGRLDAIDGVYASIPYI 225 (361)
T ss_dssp TT-------EECCTTHHHHHHHHHHHHHHHTHHHHTEE--EEEEEEETHHHHHHHHHHHHHHHTTCGGGCSEEEEESCCC
T ss_pred CC-------CCCCCCccHHHHHHHHHHHHhhHHhcCCC--eEEEEEECHHHHHHHHHHHHHHhcCCCcCcceEEEECCcc
Confidence 42 11233456899999999998762 233 99999999999999999988 788999999999998
Q ss_pred ccccccc----CCCCCccccccCCC-CCHHHHHHH-H------------hcCcccCCCCCCCCCCCCCCCCCeEEEEeeC
Q 004766 597 DMLRYHK----FTIGHAWVSDFGCS-EEEEEFYWL-I------------KYSPLHNVRRPWEQNPDKPFQYPSTLLLTAD 658 (732)
Q Consensus 597 d~~~~~~----~~~~~~~~~~~g~p-~~~~~~~~~-~------------~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~ 658 (732)
+...... ......+ .++..+ ........+ . ..+|+....... ...+|+||+||+
T Consensus 226 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l-------~~l~P~Lii~G~ 297 (361)
T 1jkm_A 226 SGGYAWDHERRLTELPSL-VENDGYFIENGGMALLVRAYDPTGEHAEDPIAWPYFASEDEL-------RGLPPFVVAVNE 297 (361)
T ss_dssp CCCTTSCHHHHHHHCTHH-HHTTTSSSCHHHHHHHHHHHSSSSTTTTCTTTCGGGCCHHHH-------TTCCCEEEEEET
T ss_pred ccccccccccccccCcch-hhccCcccCHHHHHHHHHHhCCCCCCCCCcccCccccChhhH-------cCCCceEEEEcC
Confidence 8721100 0000000 001001 111111111 1 123331100000 123599999999
Q ss_pred CCCCCCchHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeCCCCCCCC-Cc---hHHH-HHHHHHHHHHHHHHh
Q 004766 659 HDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVG-LP---TQKM-IDEAADRYGFMAKML 726 (732)
Q Consensus 659 ~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~-~~---~~~~-~~~~~~~~~fl~~~l 726 (732)
+|..++ ++.+++++|+++ +.++++++++++||++. .. ..+. .+....+.+||.++.
T Consensus 298 ~D~~~~--~~~~~~~~l~~~----------g~~~~l~~~~g~~H~~~~~~~~~~~~~~~~~~~~i~~fl~~~~ 358 (361)
T 1jkm_A 298 LDPLRD--EGIAFARRLARA----------GVDVAARVNIGLVHGADVIFRHWLPAALESTVRDVAGFAADRA 358 (361)
T ss_dssp TCTTHH--HHHHHHHHHHHT----------TCCEEEEEETTCCTTHHHHSGGGCHHHHHHHHHHHHHHHHHHH
T ss_pred cCcchh--hHHHHHHHHHHc----------CCCEEEEEeCCCccCccccccccccHHHHHHHHHHHHHHHHhh
Confidence 999988 899999999987 88999999999999876 21 1222 456678889998764
|
| >2wtm_A EST1E; hydrolase; 1.60A {Clostridium proteoclasticum} PDB: 2wtn_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=5.4e-20 Score=184.81 Aligned_cols=236 Identities=13% Similarity=0.103 Sum_probs=156.3
Q ss_pred EEEEccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcc
Q 004766 454 VFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGG 533 (732)
Q Consensus 454 ~~~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~ 533 (732)
+.++ .|| .+|.++++.|++. .++.|+||++||..+......|.. +...|.++||.|+++|+||.|........
T Consensus 4 ~~~~-~~g-~~l~~~~~~p~~~--~~~~p~vvl~HG~~~~~~~~~~~~-~~~~l~~~g~~vi~~D~~G~G~S~~~~~~-- 76 (251)
T 2wtm_A 4 MYID-CDG-IKLNAYLDMPKNN--PEKCPLCIIIHGFTGHSEERHIVA-VQETLNEIGVATLRADMYGHGKSDGKFED-- 76 (251)
T ss_dssp EEEE-ETT-EEEEEEEECCTTC--CSSEEEEEEECCTTCCTTSHHHHH-HHHHHHHTTCEEEEECCTTSTTSSSCGGG--
T ss_pred eEEe-cCC-cEEEEEEEccCCC--CCCCCEEEEEcCCCcccccccHHH-HHHHHHHCCCEEEEecCCCCCCCCCcccc--
Confidence 4454 489 9999999988752 256799999999876632223333 34556658999999999999865432111
Q ss_pred cccCCccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCccccccccc--------C-
Q 004766 534 ALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHK--------F- 604 (732)
Q Consensus 534 ~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~--------~- 604 (732)
..-....+|+.+++++|.+...+ +++.++|+|+||.+++.++.++|++++++|+..|...+..... +
T Consensus 77 --~~~~~~~~d~~~~~~~l~~~~~~--~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~ 152 (251)
T 2wtm_A 77 --HTLFKWLTNILAVVDYAKKLDFV--TDIYMAGHSQGGLSVMLAAAMERDIIKALIPLSPAAMIPEIARTGELLGLKFD 152 (251)
T ss_dssp --CCHHHHHHHHHHHHHHHTTCTTE--EEEEEEEETHHHHHHHHHHHHTTTTEEEEEEESCCTTHHHHHHHTEETTEECB
T ss_pred --CCHHHHHHHHHHHHHHHHcCccc--ceEEEEEECcchHHHHHHHHhCcccceEEEEECcHHHhHHHHhhhhhccccCC
Confidence 01122367888888988765433 4899999999999999999999999999999988754321100 0
Q ss_pred -CCCCccccccCC-CCCHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhcCC
Q 004766 605 -TIGHAWVSDFGC-SEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTS 682 (732)
Q Consensus 605 -~~~~~~~~~~g~-p~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~ 682 (732)
.........+.. ......+..+..+++...+.+ +..|+|++||++|..||+..+.++++.+.
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------i~~P~lii~G~~D~~v~~~~~~~~~~~~~------ 216 (251)
T 2wtm_A 153 PENIPDELDAWDGRKLKGNYVRVAQTIRVEDFVDK----------YTKPVLIVHGDQDEAVPYEASVAFSKQYK------ 216 (251)
T ss_dssp TTBCCSEEEETTTEEEETHHHHHHTTCCHHHHHHH----------CCSCEEEEEETTCSSSCHHHHHHHHHHSS------
T ss_pred chhcchHHhhhhccccchHHHHHHHccCHHHHHHh----------cCCCEEEEEeCCCCCcChHHHHHHHHhCC------
Confidence 000000001111 011122222223333333333 67899999999999999999888766542
Q ss_pred CCCCCCCCCEEEEEeCCCCCCCCCchHHHHHHHHHHHHHHHHHhC
Q 004766 683 LENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLG 727 (732)
Q Consensus 683 ~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 727 (732)
..++++++++||.. ... ..+....+.+||.+++.
T Consensus 217 --------~~~~~~~~~~gH~~-~~~--~~~~~~~i~~fl~~~~~ 250 (251)
T 2wtm_A 217 --------NCKLVTIPGDTHCY-DHH--LELVTEAVKEFMLEQIA 250 (251)
T ss_dssp --------SEEEEEETTCCTTC-TTT--HHHHHHHHHHHHHHHHC
T ss_pred --------CcEEEEECCCCccc-chh--HHHHHHHHHHHHHHhcc
Confidence 36889999999998 433 24567788999988764
|
| >1jjf_A Xylanase Z, endo-1,4-beta-xylanase Z, 1,4-beta-D-xylan; feruloyl esterase, ferulic acid esterase, FAE_XYNZ, XYNZ, structural genomics; 1.75A {Clostridium thermocellum} SCOP: c.69.1.2 PDB: 1jt2_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=6e-19 Score=179.08 Aligned_cols=220 Identities=12% Similarity=-0.029 Sum_probs=153.5
Q ss_pred eEEEEEEEcc-CCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcC----hhHHHHHHhc----CcEEEEEccc
Q 004766 450 HVHQVFVPSK-DGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFS----VSRTILMRHL----GAVFCIANIR 520 (732)
Q Consensus 450 ~~~~~~~~s~-dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~----~~~~~~l~~~----G~~v~~~~~r 520 (732)
.++++.+.+. +| ..+++.++.|+++...++.|+||++||+.+....+... ..+...|.++ ||+|+.+|+|
T Consensus 31 ~~~~~~~~s~~~~-~~~~~~v~~P~~~~~~~~~P~vv~lHG~g~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~vv~~d~~ 109 (268)
T 1jjf_A 31 QVVNISYFSTATN-STRPARVYLPPGYSKDKKYSVLYLLHGIGGSENDWFEGGGRANVIADNLIAEGKIKPLIIVTPNTN 109 (268)
T ss_dssp EEEEEEEEETTTT-EEEEEEEEECTTCCTTSCBCEEEEECCTTCCTTTTTTTTTCHHHHHHHHHHTTSSCCCEEEEECCC
T ss_pred eEEEEEEeccccC-CceEEEEEeCCCCCCCCCccEEEEECCCCCCcchhhhccccHHHHHHHHHHcCCCCCEEEEEeCCC
Confidence 5667777764 67 89999999999875567899999999987654332211 1123334435 5999999999
Q ss_pred CCCCC-chhHHhcccccCCccHHHH-HHHHHHHHHHcCCC--CCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCcc
Q 004766 521 GGGEY-GEEWHKGGALAKKQNCFDD-FISASEYLISAGYT--QSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVM 596 (732)
Q Consensus 521 G~g~~-g~~~~~~~~~~~~~~~~~D-~~~~~~~l~~~~~~--d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~ 596 (732)
+.+.. ...|. ...+| +.++++++.++.-+ |++|++|+|+|+||++++.++.++|++|+++|+.+|..
T Consensus 110 ~~~~~~~~~~~---------~~~~~~~~~~~~~l~~~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~s~~~ 180 (268)
T 1jjf_A 110 AAGPGIADGYE---------NFTKDLLNSLIPYIESNYSVYTDREHRAIAGLSMGGGQSFNIGLTNLDKFAYIGPISAAP 180 (268)
T ss_dssp CCCTTCSCHHH---------HHHHHHHHTHHHHHHHHSCBCCSGGGEEEEEETHHHHHHHHHHHTCTTTCSEEEEESCCT
T ss_pred CCCccccccHH---------HHHHHHHHHHHHHHHhhcCCCCCCCceEEEEECHHHHHHHHHHHhCchhhhheEEeCCCC
Confidence 86531 11111 11233 34556666654333 88999999999999999999999999999999999976
Q ss_pred cccccccCCCCCccccccCCCCCHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHH
Q 004766 597 DMLRYHKFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQ 676 (732)
Q Consensus 597 d~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~ 676 (732)
++.. +...|.... .. ... ..||+||+||.+|..||. +.+++++|+
T Consensus 181 ~~~~---------~~~~~~~~~--~~------------~~~----------~~pp~li~~G~~D~~v~~--~~~~~~~l~ 225 (268)
T 1jjf_A 181 NTYP---------NERLFPDGG--KA------------ARE----------KLKLLFIACGTNDSLIGF--GQRVHEYCV 225 (268)
T ss_dssp TSCC---------HHHHCTTTT--HH------------HHH----------HCSEEEEEEETTCTTHHH--HHHHHHHHH
T ss_pred CCCc---------hhhhcCcch--hh------------hhh----------cCceEEEEecCCCCCccH--HHHHHHHHH
Confidence 5421 111122111 00 001 246799999999999884 788999999
Q ss_pred HhhcCCCCCCCCCCCEEEEEeCCCCCCCCCchHHHHHHHHHHHHHHHHH-hCC
Q 004766 677 YVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKM-LGA 728 (732)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~-l~~ 728 (732)
++ |.+++++++++++|++.. ..+.+...+.||.++ +..
T Consensus 226 ~~----------g~~~~~~~~~g~~H~~~~----~~~~~~~~~~~l~~~~~~~ 264 (268)
T 1jjf_A 226 AN----------NINHVYWLIQGGGHDFNV----WKPGLWNFLQMADEAGLTR 264 (268)
T ss_dssp HT----------TCCCEEEEETTCCSSHHH----HHHHHHHHHHHHHHHTTTC
T ss_pred HC----------CCceEEEEcCCCCcCHhH----HHHHHHHHHHHHHhcCccc
Confidence 87 889999999999998742 234566788898875 443
|
| >2uz0_A Esterase, tributyrin esterase; alpha/beta hydrolase, hydrolase, A virulence facto LUNG infection; HET: MSE; 1.7A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.6e-20 Score=188.37 Aligned_cols=240 Identities=11% Similarity=-0.002 Sum_probs=160.3
Q ss_pred ceEEEEEEEcc-CCCeeEEEEEEEcCCCC----CCCCccEEEEEcCCCCccCCCCcCh--hHHHHHHhcCcEEEEEcccC
Q 004766 449 FHVHQVFVPSK-DGSTKIPMFIVSKKNIK----LDGSHPCLLYGYGGFNISVTPSFSV--SRTILMRHLGAVFCIANIRG 521 (732)
Q Consensus 449 ~~~~~~~~~s~-dG~~~i~~~~~~p~~~~----~~~~~P~vv~~hG~~~~~~~~~~~~--~~~~~l~~~G~~v~~~~~rG 521 (732)
+.++.+.+.+. .| .++++.++.|++.. ++++.|+||++||+.+... .|.. ....++++.|++|+.+++|+
T Consensus 5 m~~~~~~~~s~~~~-~~~~~~v~~P~~~~~~~~~~~~~p~vv~~HG~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~ 81 (263)
T 2uz0_A 5 PAVMKIEYYSQVLD-MEWGVNVLYPDANRVEEPECEDIPVLYLLHGMSGNHN--SWLKRTNVERLLRGTNLIVVMPNTSN 81 (263)
T ss_dssp CEEEEEEEEETTTT-EEEEEEEEECC---------CCBCEEEEECCTTCCTT--HHHHHSCHHHHTTTCCCEEEECCCTT
T ss_pred ceEeEEEEechhhC-CceeEEEEeCCCccccCCcCCCCCEEEEECCCCCCHH--HHHhccCHHHHHhcCCeEEEEECCCC
Confidence 45667777654 67 89999999998752 3578999999999876543 3332 24556666899999999988
Q ss_pred CCCCchhHHhcccccCCccH----HHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCccc
Q 004766 522 GGEYGEEWHKGGALAKKQNC----FDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMD 597 (732)
Q Consensus 522 ~g~~g~~~~~~~~~~~~~~~----~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d 597 (732)
++..... ..... .+|+.+.++.+..+..+|+++++++|+|+||++++.++. +|++|+++|+.+|..+
T Consensus 82 ~~~~~~~--------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~-~~~~~~~~v~~~~~~~ 152 (263)
T 2uz0_A 82 GWYTDTQ--------YGFDYYTALAEELPQVLKRFFPNMTSKREKTFIAGLSMGGYGCFKLAL-TTNRFSHAASFSGALS 152 (263)
T ss_dssp STTSBCT--------TSCBHHHHHHTHHHHHHHHHCTTBCCCGGGEEEEEETHHHHHHHHHHH-HHCCCSEEEEESCCCC
T ss_pred CccccCC--------CcccHHHHHHHHHHHHHHHHhccccCCCCceEEEEEChHHHHHHHHHh-CccccceEEEecCCcc
Confidence 7542110 11122 234444444443323458899999999999999999998 8999999999999987
Q ss_pred ccccccCCC---CC-ccccccCCCCCHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHH
Q 004766 598 MLRYHKFTI---GH-AWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLA 673 (732)
Q Consensus 598 ~~~~~~~~~---~~-~~~~~~g~p~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~ 673 (732)
+........ .. .+...++.+... .+..++|...+.+. ...+|+|++||.+|..|+ ++.++++
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~--------~~~~p~li~~G~~D~~v~--~~~~~~~ 218 (263)
T 2uz0_A 153 FQNFSPESQNLGSPAYWRGVFGEIRDW----TTSPYSLESLAKKS--------DKKTKLWAWCGEQDFLYE--ANNLAVK 218 (263)
T ss_dssp SSSCCGGGTTCSCHHHHHHHHCCCSCT----TTSTTSHHHHGGGC--------CSCSEEEEEEETTSTTHH--HHHHHHH
T ss_pred hhhccccccccccchhHHHHcCChhhh----ccccCCHHHHHHhc--------cCCCeEEEEeCCCchhhH--HHHHHHH
Confidence 654221000 00 011112322111 12344555555542 112899999999999884 6789999
Q ss_pred HHHHhhcCCCCCCCCCCCEEEEEeCCCCCCCCCchHHHHHHHHHHHHHHHHHhCCC
Q 004766 674 TMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLGAS 729 (732)
Q Consensus 674 ~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~~ 729 (732)
+|++. |.+++++++++ ||.+.. ..+....+++||.++|...
T Consensus 219 ~l~~~----------g~~~~~~~~~g-~H~~~~----~~~~~~~~~~~l~~~l~~~ 259 (263)
T 2uz0_A 219 NLKKL----------GFDVTYSHSAG-THEWYY----WEKQLEVFLTTLPIDFKLE 259 (263)
T ss_dssp HHHHT----------TCEEEEEEESC-CSSHHH----HHHHHHHHHHHSSSCCCCC
T ss_pred HHHHC----------CCCeEEEECCC-CcCHHH----HHHHHHHHHHHHHhhccch
Confidence 99987 88999999999 997631 2355677889998888754
|
| >3fnb_A Acylaminoacyl peptidase SMU_737; alpha-beta-alpha sandwich, helix bundle, structural genomics protein structure initiative; HET: PGE; 2.12A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.2e-19 Score=193.81 Aligned_cols=240 Identities=11% Similarity=0.139 Sum_probs=165.0
Q ss_pred eEEEEEEEccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHH-HHHHhcCcEEEEEcccCCCCCchh
Q 004766 450 HVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRT-ILMRHLGAVFCIANIRGGGEYGEE 528 (732)
Q Consensus 450 ~~~~~~~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~-~~l~~~G~~v~~~~~rG~g~~g~~ 528 (732)
..+++.++. +| .+++++++.+. +++.|+||++||+.+... .|..... .++. +||.|+++|+||.|+....
T Consensus 134 ~~~~~~i~~-~~-~~l~~~~~~~~----~~~~p~vv~~HG~~~~~~--~~~~~~~~~~~~-~g~~vi~~D~~G~G~s~~~ 204 (405)
T 3fnb_A 134 PLKSIEVPF-EG-ELLPGYAIISE----DKAQDTLIVVGGGDTSRE--DLFYMLGYSGWE-HDYNVLMVDLPGQGKNPNQ 204 (405)
T ss_dssp CCEEEEEEE-TT-EEEEEEEECCS----SSCCCEEEEECCSSCCHH--HHHHHTHHHHHH-TTCEEEEECCTTSTTGGGG
T ss_pred CcEEEEEeE-CC-eEEEEEEEcCC----CCCCCEEEEECCCCCCHH--HHHHHHHHHHHh-CCcEEEEEcCCCCcCCCCC
Confidence 456677776 68 89999988432 245699999999755432 2222222 4445 9999999999998875321
Q ss_pred HHhcccccCCccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCcccccccccCCC--
Q 004766 529 WHKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTI-- 606 (732)
Q Consensus 529 ~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~-- 606 (732)
.........+|+.+++++|..++ ++|+++|+|+||++++.++.++| +++++|+.+|+.++........
T Consensus 205 -----~~~~~~~~~~d~~~~~~~l~~~~----~~v~l~G~S~GG~~a~~~a~~~p-~v~~~v~~~p~~~~~~~~~~~~~~ 274 (405)
T 3fnb_A 205 -----GLHFEVDARAAISAILDWYQAPT----EKIAIAGFSGGGYFTAQAVEKDK-RIKAWIASTPIYDVAEVFRISFST 274 (405)
T ss_dssp -----TCCCCSCTHHHHHHHHHHCCCSS----SCEEEEEETTHHHHHHHHHTTCT-TCCEEEEESCCSCHHHHHHHHCC-
T ss_pred -----CCCCCccHHHHHHHHHHHHHhcC----CCEEEEEEChhHHHHHHHHhcCc-CeEEEEEecCcCCHHHHHHHhhhh
Confidence 11223345789999999987764 68999999999999999999999 8999999999998754321000
Q ss_pred ---CCccc-c----------------------ccCCCCCHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEeeCCC
Q 004766 607 ---GHAWV-S----------------------DFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHD 660 (732)
Q Consensus 607 ---~~~~~-~----------------------~~g~p~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D 660 (732)
.+.+. . .++.......++.+..+++...+.+ +.+|+||++|.+|
T Consensus 275 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----------i~~PvLii~G~~D 344 (405)
T 3fnb_A 275 ALKAPKTILKWGSKLVTSVNKVAEVNLNKYAWQFGQVDFITSVNEVLEQAQIVDYNK----------IDVPSLFLVGAGE 344 (405)
T ss_dssp -----------------CCCHHHHHHHHHHHHHHTSSSHHHHHHHHHHHCCCCCGGG----------CCSCEEEEEETTS
T ss_pred hhhCcHHHHHHHHHHhhccchhHHHHHHHhhhhcCCCCHHHHHHHHHHhhcccCHhh----------CCCCEEEEecCCC
Confidence 00000 0 0111111122233344444433444 7899999999999
Q ss_pred CCCCchHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeCCCCCCCCC-chHHHHHHHHHHHHHHHHHhCC
Q 004766 661 DRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGL-PTQKMIDEAADRYGFMAKMLGA 728 (732)
Q Consensus 661 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~-~~~~~~~~~~~~~~fl~~~l~~ 728 (732)
..||+.++.+++++|++. +.+++++++++..|+... .........+.+.+||.++|+.
T Consensus 345 ~~v~~~~~~~l~~~l~~~----------~~~~~l~~~~~~~h~gh~~~~~~~~~~~~~i~~fL~~~l~~ 403 (405)
T 3fnb_A 345 DSELMRQSQVLYDNFKQR----------GIDVTLRKFSSESGADAHCQVNNFRLMHYQVFEWLNHIFKK 403 (405)
T ss_dssp CHHHHHHHHHHHHHHHHT----------TCCEEEEEECTTTTCCSGGGGGGHHHHHHHHHHHHHHHHC-
T ss_pred cCCChHHHHHHHHHhccC----------CCCceEEEEcCCccchhccccchHHHHHHHHHHHHHHHhCc
Confidence 999999999999999987 788999999777666321 2223346677889999999974
|
| >4h0c_A Phospholipase/carboxylesterase; PSI-biology, midwest center for structural genomics, MCSG, hydrolase; HET: CIT; 1.62A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=99.82 E-value=3.6e-20 Score=180.06 Aligned_cols=187 Identities=10% Similarity=0.046 Sum_probs=130.1
Q ss_pred CCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCccHHHHHHHHHH----HHH
Q 004766 478 DGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASE----YLI 553 (732)
Q Consensus 478 ~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~----~l~ 553 (732)
.+..|+||++||..+... .|.. +...|...|+.|++|+.+|.+.|+..+...... ....+++..+.++ .+.
T Consensus 19 ~~a~~~Vv~lHG~G~~~~--~~~~-l~~~l~~~~~~v~~P~~~g~~w~~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~ 93 (210)
T 4h0c_A 19 QRAKKAVVMLHGRGGTAA--DIIS-LQKVLKLDEMAIYAPQATNNSWYPYSFMAPVQQ--NQPALDSALALVGEVVAEIE 93 (210)
T ss_dssp TTCSEEEEEECCTTCCHH--HHHG-GGGTSSCTTEEEEEECCGGGCSSSSCTTSCGGG--GTTHHHHHHHHHHHHHHHHH
T ss_pred ccCCcEEEEEeCCCCCHH--HHHH-HHHHhCCCCeEEEeecCCCCCccccccCCCccc--chHHHHHHHHHHHHHHHHHH
Confidence 356789999999543321 1221 233445589999999999887666554433222 1223444444443 344
Q ss_pred HcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCcccccccccCCCCCccccccCCCCCHHHHHHHHhcCccc
Q 004766 554 SAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHAWVSDFGCSEEEEEFYWLIKYSPLH 633 (732)
Q Consensus 554 ~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~sp~~ 633 (732)
+. .+|++||+++|+|+||++++.++.++|++|+++|+.+|.+-... . . +..
T Consensus 94 ~~-~i~~~ri~l~G~S~Gg~~a~~~a~~~p~~~~~vv~~sg~l~~~~---------~--------~-----------~~~ 144 (210)
T 4h0c_A 94 AQ-GIPAEQIYFAGFSQGACLTLEYTTRNARKYGGIIAFTGGLIGQE---------L--------A-----------IGN 144 (210)
T ss_dssp HT-TCCGGGEEEEEETHHHHHHHHHHHHTBSCCSEEEEETCCCCSSS---------C--------C-----------GGG
T ss_pred Hh-CCChhhEEEEEcCCCcchHHHHHHhCcccCCEEEEecCCCCChh---------h--------h-----------hhh
Confidence 44 47999999999999999999999999999999998877431100 0 0 000
Q ss_pred CCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeCCCCCCCCCchHHHHH
Q 004766 634 NVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMID 713 (732)
Q Consensus 634 ~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~ 713 (732)
.... ...+|+|++||.+|++||+.++++++++|+++ |.++++++||+.||++.. +
T Consensus 145 ~~~~---------~~~~Pvl~~hG~~D~~vp~~~~~~~~~~L~~~----------g~~v~~~~ypg~gH~i~~------~ 199 (210)
T 4h0c_A 145 YKGD---------FKQTPVFISTGNPDPHVPVSRVQESVTILEDM----------NAAVSQVVYPGRPHTISG------D 199 (210)
T ss_dssp CCBC---------CTTCEEEEEEEESCTTSCHHHHHHHHHHHHHT----------TCEEEEEEEETCCSSCCH------H
T ss_pred hhhh---------ccCCceEEEecCCCCccCHHHHHHHHHHHHHC----------CCCeEEEEECCCCCCcCH------H
Confidence 0111 14579999999999999999999999999998 999999999999998853 2
Q ss_pred HHHHHHHHHH
Q 004766 714 EAADRYGFMA 723 (732)
Q Consensus 714 ~~~~~~~fl~ 723 (732)
+.+.+.+||.
T Consensus 200 el~~i~~wL~ 209 (210)
T 4h0c_A 200 EIQLVNNTIL 209 (210)
T ss_dssp HHHHHHHTTT
T ss_pred HHHHHHHHHc
Confidence 3445666664
|
| >3trd_A Alpha/beta hydrolase; cellular processes; 1.50A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.82 E-value=3.8e-19 Score=172.94 Aligned_cols=200 Identities=10% Similarity=0.029 Sum_probs=146.5
Q ss_pred EEEEEEEccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCC--ccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchh
Q 004766 451 VHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFN--ISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEE 528 (732)
Q Consensus 451 ~~~~~~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~--~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~ 528 (732)
.+.+.+++.|| +++++++.|++ .++.|+||++||++. ......+...+...|+++||.|+++|+||.|.....
T Consensus 6 ~~~~~~~~~~g--~l~~~~~~p~~---~~~~~~vv~~HG~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~d~~g~g~s~~~ 80 (208)
T 3trd_A 6 NEDFLIQGPVG--QLEVMITRPKG---IEKSVTGIICHPHPLHGGTMNNKVVTTLAKALDELGLKTVRFNFRGVGKSQGR 80 (208)
T ss_dssp SSCEEEECSSS--EEEEEEECCSS---CCCSEEEEEECSCGGGTCCTTCHHHHHHHHHHHHTTCEEEEECCTTSTTCCSC
T ss_pred cceEEEECCCc--eEEEEEEcCCC---CCCCCEEEEEcCCCCCCCccCCchHHHHHHHHHHCCCEEEEEecCCCCCCCCC
Confidence 45678888888 89999998875 357899999999632 111222223345666669999999999998865432
Q ss_pred HHhcccccCCccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCcccccccccCCCCC
Q 004766 529 WHKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGH 608 (732)
Q Consensus 529 ~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~ 608 (732)
+ .......+|+.+++++|.++ .+.++++++|+|+||.+++.++ ++| .++++|+..|..+.
T Consensus 81 ~------~~~~~~~~d~~~~~~~l~~~--~~~~~i~l~G~S~Gg~~a~~~a-~~~-~v~~~v~~~~~~~~---------- 140 (208)
T 3trd_A 81 Y------DNGVGEVEDLKAVLRWVEHH--WSQDDIWLAGFSFGAYISAKVA-YDQ-KVAQLISVAPPVFY---------- 140 (208)
T ss_dssp C------CTTTHHHHHHHHHHHHHHHH--CTTCEEEEEEETHHHHHHHHHH-HHS-CCSEEEEESCCTTS----------
T ss_pred c------cchHHHHHHHHHHHHHHHHh--CCCCeEEEEEeCHHHHHHHHHh-ccC-CccEEEEecccccc----------
Confidence 2 23345689999999999987 4458999999999999999999 667 89999988886621
Q ss_pred ccccccCCCCCHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhcCCCCCCCC
Q 004766 609 AWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQ 688 (732)
Q Consensus 609 ~~~~~~g~p~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~ 688 (732)
| ++..+.. +..|+|+++|.+|..||+.++.++++++..
T Consensus 141 -~--------------------~~~~~~~----------~~~p~l~i~g~~D~~~~~~~~~~~~~~~~~----------- 178 (208)
T 3trd_A 141 -E--------------------GFASLTQ----------MASPWLIVQGDQDEVVPFEQVKAFVNQISS----------- 178 (208)
T ss_dssp -G--------------------GGTTCCS----------CCSCEEEEEETTCSSSCHHHHHHHHHHSSS-----------
T ss_pred -C--------------------Cchhhhh----------cCCCEEEEECCCCCCCCHHHHHHHHHHccC-----------
Confidence 1 0111222 467999999999999999998888776542
Q ss_pred CCCEEEEEeCCCCCCCCCchHHHHHHHHHHHHHH
Q 004766 689 TNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFM 722 (732)
Q Consensus 689 ~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl 722 (732)
.+++++++++||.+..... +....+.+||
T Consensus 179 --~~~~~~~~~~~H~~~~~~~---~~~~~i~~fl 207 (208)
T 3trd_A 179 --PVEFVVMSGASHFFHGRLI---ELRELLVRNL 207 (208)
T ss_dssp --CCEEEEETTCCSSCTTCHH---HHHHHHHHHH
T ss_pred --ceEEEEeCCCCCcccccHH---HHHHHHHHHh
Confidence 3789999999999876432 3334455565
|
| >3pfb_A Cinnamoyl esterase; alpha/beta hydrolase fold, hydrolase, cinnamoyl/Fe esterase, hydroxycinammates, extracellular; HET: ZYC; 1.58A {Lactobacillus johnsonii} PDB: 3pf9_A* 3pfc_A* 3s2z_A* 3pf8_A 3qm1_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=6.1e-19 Score=178.74 Aligned_cols=237 Identities=12% Similarity=0.031 Sum_probs=161.7
Q ss_pred eEEEEEEEccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhH
Q 004766 450 HVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEW 529 (732)
Q Consensus 450 ~~~~~~~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~ 529 (732)
..+.+.++ .+| .+|.+.++.|++ .+.|+||++||+.+......|. .+...|.++||.|+++|+||.|......
T Consensus 21 ~~~~~~~~-~~g-~~l~~~~~~p~~----~~~p~vv~~HG~~~~~~~~~~~-~~~~~l~~~G~~v~~~d~~G~G~s~~~~ 93 (270)
T 3pfb_A 21 GMATITLE-RDG-LQLVGTREEPFG----EIYDMAIIFHGFTANRNTSLLR-EIANSLRDENIASVRFDFNGHGDSDGKF 93 (270)
T ss_dssp EEEEEEEE-ETT-EEEEEEEEECSS----SSEEEEEEECCTTCCTTCHHHH-HHHHHHHHTTCEEEEECCTTSTTSSSCG
T ss_pred cceEEEec-cCC-EEEEEEEEcCCC----CCCCEEEEEcCCCCCccccHHH-HHHHHHHhCCcEEEEEccccccCCCCCC
Confidence 44555555 589 999999998864 4589999999987763222233 3455566699999999999988754322
Q ss_pred HhcccccCCccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCccccccccc------
Q 004766 530 HKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHK------ 603 (732)
Q Consensus 530 ~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~------ 603 (732)
.. ..-....+|+.++++++.++. +.++++++|+|+||++++.++.++|++++++|+..|..+......
T Consensus 94 ~~----~~~~~~~~d~~~~i~~l~~~~--~~~~i~l~G~S~Gg~~a~~~a~~~p~~v~~~v~~~~~~~~~~~~~~~~~~~ 167 (270)
T 3pfb_A 94 EN----MTVLNEIEDANAILNYVKTDP--HVRNIYLVGHAQGGVVASMLAGLYPDLIKKVVLLAPAATLKGDALEGNTQG 167 (270)
T ss_dssp GG----CCHHHHHHHHHHHHHHHHTCT--TEEEEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCTHHHHHHHHTEETT
T ss_pred Cc----cCHHHHHHhHHHHHHHHHhCc--CCCeEEEEEeCchhHHHHHHHHhCchhhcEEEEeccccccchhhhhhhhhc
Confidence 11 111234688999999998763 335999999999999999999999999999999999876532110
Q ss_pred CCCCCccc----cccCCCCCHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhh
Q 004766 604 FTIGHAWV----SDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVL 679 (732)
Q Consensus 604 ~~~~~~~~----~~~g~p~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~ 679 (732)
......+. ..............+...++...+.. +..|+|+++|.+|..||+..+.++.+.+.
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~P~l~i~g~~D~~~~~~~~~~~~~~~~--- 234 (270)
T 3pfb_A 168 VTYNPDHIPDRLPFKDLTLGGFYLRIAQQLPIYEVSAQ----------FTKPVCLIHGTDDTVVSPNASKKYDQIYQ--- 234 (270)
T ss_dssp EECCTTSCCSEEEETTEEEEHHHHHHHHHCCHHHHHTT----------CCSCEEEEEETTCSSSCTHHHHHHHHHCS---
T ss_pred cccCcccccccccccccccchhHhhcccccCHHHHHhh----------CCccEEEEEcCCCCCCCHHHHHHHHHhCC---
Confidence 00000000 00111112233344555555555555 78899999999999999999888776643
Q ss_pred cCCCCCCCCCCCEEEEEeCCCCCCCCCchHHHHHHHHHHHHHHHHH
Q 004766 680 CTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKM 725 (732)
Q Consensus 680 ~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~ 725 (732)
.+++++++++||.+.... ..+....+.+||.++
T Consensus 235 -----------~~~~~~~~~~gH~~~~~~--~~~~~~~i~~fl~~~ 267 (270)
T 3pfb_A 235 -----------NSTLHLIEGADHCFSDSY--QKNAVNLTTDFLQNN 267 (270)
T ss_dssp -----------SEEEEEETTCCTTCCTHH--HHHHHHHHHHHHC--
T ss_pred -----------CCeEEEcCCCCcccCccc--hHHHHHHHHHHHhhc
Confidence 368999999999987432 245666777887654
|
| >1sfr_A Antigen 85-A; alpha/beta hydrolase, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 2.70A {Mycobacterium tuberculosis} SCOP: c.69.1.3 | Back alignment and structure |
|---|
Probab=99.81 E-value=2.4e-19 Score=185.45 Aligned_cols=248 Identities=14% Similarity=0.088 Sum_probs=164.5
Q ss_pred eEEEEEEEcc-CCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChh--HHHHHHhcCcEEEEEcccCCCCCc
Q 004766 450 HVHQVFVPSK-DGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVS--RTILMRHLGAVFCIANIRGGGEYG 526 (732)
Q Consensus 450 ~~~~~~~~s~-dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~--~~~~l~~~G~~v~~~~~rG~g~~g 526 (732)
.++.+.+.|. .| .+|+++ +.|.. ++.|+||++||+.+......|... +..++++.|++|+++|.++++.|.
T Consensus 8 ~v~~~~~~S~~~~-~~i~v~-~~p~~----~~~p~vvllHG~~~~~~~~~w~~~~~~~~~~~~~~~~vv~p~~~~~~~~~ 81 (304)
T 1sfr_A 8 PVEYLQVPSPSMG-RDIKVQ-FQSGG----ANSPALYLLDGLRAQDDFSGWDINTPAFEWYDQSGLSVVMPVGGQSSFYS 81 (304)
T ss_dssp CCEEEEEEETTTT-EEEEEE-EECCS----TTBCEEEEECCTTCCSSSCHHHHHCCHHHHHTTSSCEEEEECCCTTCTTC
T ss_pred eEEEEEEECccCC-CceEEE-ECCCC----CCCCEEEEeCCCCCCCCcchhhcCCCHHHHHhcCCeEEEEECCCCCcccc
Confidence 4566777775 46 788877 44443 578999999998532222233221 345677689999999998765442
Q ss_pred hhHHhccccc--CCccHHHHHH--HHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCcccccccc
Q 004766 527 EEWHKGGALA--KKQNCFDDFI--SASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYH 602 (732)
Q Consensus 527 ~~~~~~~~~~--~~~~~~~D~~--~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~ 602 (732)
.|....... .....+++++ +++.++.++--+++++++|+|+||||++++.++.++|++|+++|+.+|.+++....
T Consensus 82 -~~~~~~~~~g~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~l~G~S~GG~~al~~a~~~p~~~~~~v~~sg~~~~~~~~ 160 (304)
T 1sfr_A 82 -DWYQPACGKAGCQTYKWETFLTSELPGWLQANRHVKPTGSAVVGLSMAASSALTLAIYHPQQFVYAGAMSGLLDPSQAM 160 (304)
T ss_dssp -BCSSCEEETTEEECCBHHHHHHTHHHHHHHHHHCBCSSSEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCSCTTSTT
T ss_pred -ccCCccccccccccccHHHHHHHHHHHHHHHHCCCCCCceEEEEECHHHHHHHHHHHhCccceeEEEEECCccCccccc
Confidence 121110000 0123344543 34444444323677899999999999999999999999999999999987654310
Q ss_pred c--------CCCCC-ccccccCCCCCHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCC------------
Q 004766 603 K--------FTIGH-AWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDD------------ 661 (732)
Q Consensus 603 ~--------~~~~~-~~~~~~g~p~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~------------ 661 (732)
. ...+. .+...||.+... .+.+.+|...+.+.. ...+|++|.||.+|+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~g~~~~~----~~~~~~p~~~~~~l~-------~~~~pi~l~~G~~D~~~~~~~~~~~~~ 229 (304)
T 1sfr_A 161 GPTLIGLAMGDAGGYKASDMWGPKEDP----AWQRNDPLLNVGKLI-------ANNTRVWVYCGNGKPSDLGGNNLPAKF 229 (304)
T ss_dssp HHHHHHHHHHHTTSCCHHHHHCSTTST----HHHHSCTTTTHHHHH-------HHTCEEEEECCCSCCBTTBCCSHHHHH
T ss_pred hhhhhhHhhhhccccchHHhcCCcchh----hhHhcCHHHHHHHhh-------hcCCeEEEEecCCCCccccccccccch
Confidence 0 00000 112235655332 245678876654300 025899999999998
Q ss_pred --CCCchHHHHHHHHHHHhhcCCCCCCCCC-CCEEEEEeCCCCCCCCCchHHHHHHHHHHHHHHHHHhCCC
Q 004766 662 --RVVPLHSLKLLATMQYVLCTSLENSPQT-NPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLGAS 729 (732)
Q Consensus 662 --~v~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~~ 729 (732)
+|++.++.+++++|+++ | .++.+++|++++|.+. .+.+.+...+.||.+.|+..
T Consensus 230 ~e~~~~~~~~~~~~~L~~~----------G~~~v~~~~~~~g~H~~~----~w~~~l~~~l~~l~~~l~~~ 286 (304)
T 1sfr_A 230 LEGFVRTSNIKFQDAYNAG----------GGHNGVFDFPDSGTHSWE----YWGAQLNAMKPDLQRALGAT 286 (304)
T ss_dssp HHHHHHHHHHHHHHHHHHT----------TCCSEEEECCSCCCSSHH----HHHHHHHHTHHHHHHHHTCC
T ss_pred hHHHHHHHHHHHHHHHHhC----------CCCceEEEecCCCccCHH----HHHHHHHHHHHHHHHhcCCC
Confidence 78899999999999998 8 9999999988899752 13455677899999999864
|
| >1jji_A Carboxylesterase; alpha-beta hydrolase fold, hydrolase; HET: EPE; 2.20A {Archaeoglobus fulgidus} SCOP: c.69.1.2 | Back alignment and structure |
|---|
Probab=99.81 E-value=5.1e-19 Score=183.81 Aligned_cols=228 Identities=15% Similarity=0.133 Sum_probs=157.6
Q ss_pred eEEEEEEEccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCC-CCcChhHHHHHH-hcCcEEEEEcccCCCCCch
Q 004766 450 HVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVT-PSFSVSRTILMR-HLGAVFCIANIRGGGEYGE 527 (732)
Q Consensus 450 ~~~~~~~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~-~~~~~~~~~~l~-~~G~~v~~~~~rG~g~~g~ 527 (732)
.++.+.+++.+| .|++.++ +. .++.|+||++|||...... ..+.. +...|+ +.||.|+.+|+||.|+..
T Consensus 55 ~~~~~~i~~~~g--~i~~~~y-~~----~~~~p~vv~~HGgg~~~g~~~~~~~-~~~~la~~~g~~Vv~~dyrg~g~~~- 125 (311)
T 1jji_A 55 RVEDRTIKGRNG--DIRVRVY-QQ----KPDSPVLVYYHGGGFVICSIESHDA-LCRRIARLSNSTVVSVDYRLAPEHK- 125 (311)
T ss_dssp EEEEEEEEETTE--EEEEEEE-ES----SSSEEEEEEECCSTTTSCCTGGGHH-HHHHHHHHHTSEEEEEECCCTTTSC-
T ss_pred eEEEEEecCCCC--cEEEEEE-cC----CCCceEEEEECCcccccCChhHhHH-HHHHHHHHhCCEEEEecCCCCCCCC-
Confidence 578888888777 7888888 42 3578999999998632222 23333 334444 579999999999988642
Q ss_pred hHHhcccccCCccHHHHHHHHHHHHHHcC---CCCCCcEEEEecChhHHHHHHHHhhCCCe----eeEEEEcCCcccccc
Q 004766 528 EWHKGGALAKKQNCFDDFISASEYLISAG---YTQSRKLCIEGGSNGGLLVGACINQRPDL----FGCALAHVGVMDMLR 600 (732)
Q Consensus 528 ~~~~~~~~~~~~~~~~D~~~~~~~l~~~~---~~d~~~i~i~G~S~GG~l~~~~~~~~p~~----f~a~v~~~p~~d~~~ 600 (732)
.....+|+.++++|+.+.. .+|+++|+|+|+|+||.+++.++.++|+. ++++|+.+|+.|+..
T Consensus 126 ----------~p~~~~d~~~~~~~l~~~~~~~~~d~~~i~l~G~S~GG~la~~~a~~~~~~~~~~~~~~vl~~p~~~~~~ 195 (311)
T 1jji_A 126 ----------FPAAVYDCYDATKWVAENAEELRIDPSKIFVGGDSAGGNLAAAVSIMARDSGEDFIKHQILIYPVVNFVA 195 (311)
T ss_dssp ----------TTHHHHHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHTTCCCEEEEEEESCCCCSSS
T ss_pred ----------CCCcHHHHHHHHHHHHhhHHHhCCCchhEEEEEeCHHHHHHHHHHHHHHhcCCCCceEEEEeCCccCCCC
Confidence 2345789999999998752 35788999999999999999999887765 999999999988642
Q ss_pred cccCCCCCccccccC-CC--CCHHHHHHH-------------HhcCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCC
Q 004766 601 YHKFTIGHAWVSDFG-CS--EEEEEFYWL-------------IKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVV 664 (732)
Q Consensus 601 ~~~~~~~~~~~~~~g-~p--~~~~~~~~~-------------~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~ 664 (732)
... .+ .++. .+ .......++ ...+|+. ... ...||+||+||++|..++
T Consensus 196 ~~~-----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~l--------~~~~P~li~~G~~D~l~~ 259 (311)
T 1jji_A 196 PTP-----SL-LEFGEGLWILDQKIMSWFSEQYFSREEDKFNPLASVIF--ADL--------ENLPPALIITAEYDPLRD 259 (311)
T ss_dssp CCH-----HH-HHTSSSCSSCCHHHHHHHHHHHCSSGGGGGCTTTSGGG--SCC--------TTCCCEEEEEEEECTTHH
T ss_pred CCc-----cH-HHhcCCCccCCHHHHHHHHHHhCCCCccCCCcccCccc--ccc--------cCCChheEEEcCcCcchH
Confidence 210 00 0000 00 011111111 1124443 111 135899999999999874
Q ss_pred chHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeCCCCCCCCCc---hHHHHHHHHHHHHHHHH
Q 004766 665 PLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLP---TQKMIDEAADRYGFMAK 724 (732)
Q Consensus 665 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~---~~~~~~~~~~~~~fl~~ 724 (732)
++.+++++|+++ +.+++++++++++|++... .....+..+.+.+||.+
T Consensus 260 --~~~~~~~~l~~~----------g~~~~~~~~~g~~H~~~~~~~~~~~~~~~~~~i~~fl~~ 310 (311)
T 1jji_A 260 --EGEVFGQMLRRA----------GVEASIVRYRGVLHGFINYYPVLKAARDAINQIAALLVF 310 (311)
T ss_dssp --HHHHHHHHHHHT----------TCCEEEEEEEEEETTGGGGTTTCHHHHHHHHHHHHHHHC
T ss_pred --HHHHHHHHHHHc----------CCCEEEEEECCCCeeccccCCcCHHHHHHHHHHHHHHhh
Confidence 788999999988 8899999999999987532 12334566778888753
|
| >1jfr_A Lipase; serine hydrolase; 1.90A {Streptomyces exfoliatus} SCOP: c.69.1.16 | Back alignment and structure |
|---|
Probab=99.81 E-value=1.2e-18 Score=176.22 Aligned_cols=206 Identities=16% Similarity=0.077 Sum_probs=156.2
Q ss_pred CceEEEEEEEcc--CCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCC
Q 004766 448 EFHVHQVFVPSK--DGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEY 525 (732)
Q Consensus 448 ~~~~~~~~~~s~--dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~ 525 (732)
.+.++.+.+++. +| . ..+.+++|... ..++.|+||++||..+... .|.. +...|+++||.|+++|+||.|..
T Consensus 22 ~~~~~~~~~~~~~~~~-~-~~~~l~~p~~~-~~~~~p~vv~~HG~~~~~~--~~~~-~~~~l~~~G~~v~~~d~~g~g~~ 95 (262)
T 1jfr_A 22 PYATSQTSVSSLVASG-F-GGGTIYYPTST-ADGTFGAVVISPGFTAYQS--SIAW-LGPRLASQGFVVFTIDTNTTLDQ 95 (262)
T ss_dssp SSCEEEEEECTTTCSS-S-CCEEEEEESCC-TTCCEEEEEEECCTTCCGG--GTTT-HHHHHHTTTCEEEEECCSSTTCC
T ss_pred CCCccceEecceeccC-C-CceeEEecCCC-CCCCCCEEEEeCCcCCCch--hHHH-HHHHHHhCCCEEEEeCCCCCCCC
Confidence 456677777665 44 2 35777888753 2467899999999876643 3333 44556669999999999998764
Q ss_pred chhHHhcccccCCccHHHHHHHHHHHHHH----cCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCccccccc
Q 004766 526 GEEWHKGGALAKKQNCFDDFISASEYLIS----AGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRY 601 (732)
Q Consensus 526 g~~~~~~~~~~~~~~~~~D~~~~~~~l~~----~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~ 601 (732)
.. ....|+.++++++.+ ....+.++++++|+|+||++++.++.++|+ ++++|+..|+..
T Consensus 96 ~~------------~~~~d~~~~~~~l~~~~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~p~-v~~~v~~~p~~~---- 158 (262)
T 1jfr_A 96 PD------------SRGRQLLSALDYLTQRSSVRTRVDATRLGVMGHSMGGGGSLEAAKSRTS-LKAAIPLTGWNT---- 158 (262)
T ss_dssp HH------------HHHHHHHHHHHHHHHTSTTGGGEEEEEEEEEEETHHHHHHHHHHHHCTT-CSEEEEESCCCS----
T ss_pred Cc------------hhHHHHHHHHHHHHhccccccccCcccEEEEEEChhHHHHHHHHhcCcc-ceEEEeecccCc----
Confidence 32 234688899999988 445678899999999999999999999998 888888776421
Q ss_pred ccCCCCCccccccCCCCCHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchH-HHHHHHHHHHhhc
Q 004766 602 HKFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLH-SLKLLATMQYVLC 680 (732)
Q Consensus 602 ~~~~~~~~~~~~~g~p~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~-~~~~~~~l~~~~~ 680 (732)
...+.+ +.+|+|+++|.+|..|++.+ +.++++.|..
T Consensus 159 ------------------------------~~~~~~----------~~~P~l~i~G~~D~~~~~~~~~~~~~~~l~~--- 195 (262)
T 1jfr_A 159 ------------------------------DKTWPE----------LRTPTLVVGADGDTVAPVATHSKPFYESLPG--- 195 (262)
T ss_dssp ------------------------------CCCCTT----------CCSCEEEEEETTCSSSCTTTTHHHHHHHSCT---
T ss_pred ------------------------------cccccc----------cCCCEEEEecCccccCCchhhHHHHHHHhhc---
Confidence 112222 67899999999999999998 9999988842
Q ss_pred CCCCCCCCCCCEEEEEeCCCCCCCCCchHHHHHHHHHHHHHHHHHhCCC
Q 004766 681 TSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLGAS 729 (732)
Q Consensus 681 ~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~~ 729 (732)
+.++++++++++||.+..... .+....+.+||.++++..
T Consensus 196 --------~~~~~~~~~~~~~H~~~~~~~--~~~~~~i~~fl~~~l~~~ 234 (262)
T 1jfr_A 196 --------SLDKAYLELRGASHFTPNTSD--TTIAKYSISWLKRFIDSD 234 (262)
T ss_dssp --------TSCEEEEEETTCCTTGGGSCC--HHHHHHHHHHHHHHHSCC
T ss_pred --------CCCceEEEeCCCCcCCcccch--HHHHHHHHHHHHHHhcCc
Confidence 567899999999999765432 356678899999998653
|
| >1lns_A X-prolyl dipeptidyl aminopetidase; alpha beta hydrolase fold; 2.20A {Lactococcus lactis} SCOP: a.40.2.1 b.18.1.13 c.69.1.21 | Back alignment and structure |
|---|
Probab=99.81 E-value=4.4e-19 Score=204.40 Aligned_cols=252 Identities=14% Similarity=0.114 Sum_probs=165.3
Q ss_pred CCCCCceEEEEEE-----EccCCCee--EEEEEEEcCCCCCCCCccEEEEEcCCCCc--c---------C----------
Q 004766 444 FDRSEFHVHQVFV-----PSKDGSTK--IPMFIVSKKNIKLDGSHPCLLYGYGGFNI--S---------V---------- 495 (732)
Q Consensus 444 ~~~~~~~~~~~~~-----~s~dG~~~--i~~~~~~p~~~~~~~~~P~vv~~hG~~~~--~---------~---------- 495 (732)
++......+.+++ +..|| ++ |.+.|++|++. ++.|+||..||..+. . .
T Consensus 161 ~~~~~~~~e~~~ve~~v~~~~DG-~~d~L~a~l~~P~~~---~k~PvIv~~~pYg~~~~~~~~~~~~~~~~~~l~~~~p~ 236 (763)
T 1lns_A 161 FDSSLLEREVLWVESPVDSEQRG-ENDLIKIQIIRPKST---EKLPVVMTASPYHLGINDKANDLALHDMNVELEEKTSH 236 (763)
T ss_dssp SCGGGCEEEEEEEECSCCTTCSS-SCCEEEEEEEECCCS---SCEEEEEEECSSTTCCCHHHHHHHCCCCCCCCCCCCSE
T ss_pred cCCccceeeeeEEecCcccCCCC-CeeeEEEEEEecCCC---CcccEEEecCCcCCCCcccccccccccccccccccCcc
Confidence 3433344444444 46799 99 99999999873 689999966543221 0 0
Q ss_pred -------------------------CCCcC----hhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCccHHHHHH
Q 004766 496 -------------------------TPSFS----VSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFI 546 (732)
Q Consensus 496 -------------------------~~~~~----~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~ 546 (732)
...|. .....+++++||+|+++|+||.|+.+..+ ........+|+.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~GYaVv~~D~RG~G~S~G~~-----~~~~~~e~~D~~ 311 (763)
T 1lns_A 237 EIHVEQKLPQKLSAKAKELPIVDKAPYRFTHGWTYSLNDYFLTRGFASIYVAGVGTRSSDGFQ-----TSGDYQQIYSMT 311 (763)
T ss_dssp ECCCCCCCCCCCCCCCCCCCEESSCSCBCCCCCCCHHHHHHHTTTCEEEEECCTTSTTSCSCC-----CTTSHHHHHHHH
T ss_pred ccccccccccccccccccccccccchhccccccccchHHHHHHCCCEEEEECCCcCCCCCCcC-----CCCCHHHHHHHH
Confidence 01121 11235566699999999999998764432 122335679999
Q ss_pred HHHHHHHHc---------------CCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCcccccccccCC------
Q 004766 547 SASEYLISA---------------GYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFT------ 605 (732)
Q Consensus 547 ~~~~~l~~~---------------~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~------ 605 (732)
++++||..+ .+ +.+||+++|+||||++++.++.++|+.++|+|+.+|+.|+.......
T Consensus 312 a~IdwL~~~~~~~~d~~~~~~v~q~~-~~grVgl~G~SyGG~ial~~Aa~~p~~lkaiV~~~~~~d~~~~~~~~g~~~~~ 390 (763)
T 1lns_A 312 AVIDWLNGRARAYTSRKKTHEIKASW-ANGKVAMTGKSYLGTMAYGAATTGVEGLELILAEAGISSWYNYYRENGLVRSP 390 (763)
T ss_dssp HHHHHHTTSSCEESSTTCCCEECCTT-EEEEEEEEEETHHHHHHHHHHTTTCTTEEEEEEESCCSBHHHHHBSSSSBCCC
T ss_pred HHHHHHhhcccccccccccccccccC-CCCcEEEEEECHHHHHHHHHHHhCCcccEEEEEecccccHHHHhhhcchhhhc
Confidence 999999843 33 35799999999999999999999999999999999998764422100
Q ss_pred CC-Cccc----cc--cCCCCCH-------HHH-------------------HHHHhcCcccCCCCCCCCCCCCCCCCCeE
Q 004766 606 IG-HAWV----SD--FGCSEEE-------EEF-------------------YWLIKYSPLHNVRRPWEQNPDKPFQYPST 652 (732)
Q Consensus 606 ~~-~~~~----~~--~g~p~~~-------~~~-------------------~~~~~~sp~~~~~~~~~~~~~~~~~~~p~ 652 (732)
.+ ..+. .. +.....+ +.+ +++...+|...+++ +++|+
T Consensus 391 ~g~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~s~~~~l~~----------I~~Pv 460 (763)
T 1lns_A 391 GGFPGEDLDVLAALTYSRNLDGADFLKGNAEYEKRLAEMTAALDRKSGDYNQFWHDRNYLINTDK----------VKADV 460 (763)
T ss_dssp TTCTTCCHHHHHHHHCGGGGSHHHHHHHHHHHHHHHHHHHHHHCTTTCCCCHHHHTTBGGGGGGG----------CCSEE
T ss_pred ccCCchhhhHHhHHHHhhhcCcchhhhHHHHHHHHHHHHHhhhhhccCchhHHhhccChhhHhhc----------CCCCE
Confidence 00 0000 00 0000000 000 11233455555555 88999
Q ss_pred EEEeeCCCCCCCchHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeCCCCCCCCCchHHHHHHHHHHHHHHHHHhCC
Q 004766 653 LLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLGA 728 (732)
Q Consensus 653 Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~ 728 (732)
|++||.+|..||+.++.+++++|+. +.+..+.+ .++||....... ..+....+.+||.++|+.
T Consensus 461 Lii~G~~D~~vp~~~a~~l~~al~~-----------~~~~~l~i-~~~gH~~~~~~~-~~~~~~~i~~Ffd~~Lkg 523 (763)
T 1lns_A 461 LIVHGLQDWNVTPEQAYNFWKALPE-----------GHAKHAFL-HRGAHIYMNSWQ-SIDFSETINAYFVAKLLD 523 (763)
T ss_dssp EEEEETTCCSSCTHHHHHHHHHSCT-----------TCCEEEEE-ESCSSCCCTTBS-SCCHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCChHHHHHHHHhhcc-----------CCCeEEEE-eCCcccCccccc-hHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999998863 34566655 578998643211 123466789999999965
|
| >2fuk_A XC6422 protein; A/B hydrolase, structural genomics, X-RAY diffraction; 1.60A {Xanthomonas campestris} SCOP: c.69.1.36 | Back alignment and structure |
|---|
Probab=99.80 E-value=1e-18 Score=171.38 Aligned_cols=208 Identities=13% Similarity=0.042 Sum_probs=153.9
Q ss_pred eEEEEEEEccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCC--ccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCch
Q 004766 450 HVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFN--ISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGE 527 (732)
Q Consensus 450 ~~~~~~~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~--~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~ 527 (732)
..+.+.+++.+| +++++++.|++.. .++.|+||++||+.. ......+...+...|+++||.|+++|+||.|....
T Consensus 9 ~~~~~~~~~~~g--~~~~~~~~p~~~~-~~~~~~vv~~HG~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~d~~g~g~s~~ 85 (220)
T 2fuk_A 9 ESAALTLDGPVG--PLDVAVDLPEPDV-AVQPVTAIVCHPLSTEGGSMHNKVVTMAARALRELGITVVRFNFRSVGTSAG 85 (220)
T ss_dssp SCEEEEEEETTE--EEEEEEECCCTTS-CCCSEEEEEECSCTTTTCSTTCHHHHHHHHHHHTTTCEEEEECCTTSTTCCS
T ss_pred cceEEEEeCCCC--eEEEEEEeCCCCC-ccccCEEEEECCCCCcCCcccchHHHHHHHHHHHCCCeEEEEecCCCCCCCC
Confidence 457788888887 7999999987620 145899999999642 21122222234566676899999999999886543
Q ss_pred hHHhcccccCCccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCcccccccccCCCC
Q 004766 528 EWHKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIG 607 (732)
Q Consensus 528 ~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~ 607 (732)
.+ .......+|+.++++++.++. +.++++++|+|+||.+++.++.++ .++++|+..|..+...
T Consensus 86 ~~------~~~~~~~~d~~~~~~~l~~~~--~~~~i~l~G~S~Gg~~a~~~a~~~--~v~~~v~~~~~~~~~~------- 148 (220)
T 2fuk_A 86 SF------DHGDGEQDDLRAVAEWVRAQR--PTDTLWLAGFSFGAYVSLRAAAAL--EPQVLISIAPPAGRWD------- 148 (220)
T ss_dssp CC------CTTTHHHHHHHHHHHHHHHHC--TTSEEEEEEETHHHHHHHHHHHHH--CCSEEEEESCCBTTBC-------
T ss_pred Cc------ccCchhHHHHHHHHHHHHhcC--CCCcEEEEEECHHHHHHHHHHhhc--cccEEEEecccccchh-------
Confidence 32 223456899999999999874 667999999999999999999886 7899999888765421
Q ss_pred CccccccCCCCCHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhcCCCCCCC
Q 004766 608 HAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSP 687 (732)
Q Consensus 608 ~~~~~~~g~p~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~ 687 (732)
+..+. ...|+|+++|.+|..||+.++.++++++.
T Consensus 149 ------------------------~~~~~-----------~~~p~l~i~g~~D~~~~~~~~~~~~~~~~----------- 182 (220)
T 2fuk_A 149 ------------------------FSDVQ-----------PPAQWLVIQGDADEIVDPQAVYDWLETLE----------- 182 (220)
T ss_dssp ------------------------CTTCC-----------CCSSEEEEEETTCSSSCHHHHHHHHTTCS-----------
T ss_pred ------------------------hhhcc-----------cCCcEEEEECCCCcccCHHHHHHHHHHhC-----------
Confidence 11111 24589999999999999998888776653
Q ss_pred CCCCEEEEEeCCCCCCCCCchHHHHHHHHHHHHHHHHHhCC
Q 004766 688 QTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLGA 728 (732)
Q Consensus 688 ~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~ 728 (732)
..+++++++++||.+.... .+....+.+||.++|..
T Consensus 183 --~~~~~~~~~~~~H~~~~~~---~~~~~~i~~~l~~~l~~ 218 (220)
T 2fuk_A 183 --QQPTLVRMPDTSHFFHRKL---IDLRGALQHGVRRWLPA 218 (220)
T ss_dssp --SCCEEEEETTCCTTCTTCH---HHHHHHHHHHHGGGCSS
T ss_pred --cCCcEEEeCCCCceehhhH---HHHHHHHHHHHHHHhhc
Confidence 2468899999999987632 24566788899888754
|
| >3vis_A Esterase; alpha/beta-hydrolase fold, polyethylene terephthal hydrolase; HET: PE4; 1.76A {Thermobifida alba} | Back alignment and structure |
|---|
Probab=99.80 E-value=1e-18 Score=180.98 Aligned_cols=193 Identities=16% Similarity=0.067 Sum_probs=149.4
Q ss_pred cCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCC
Q 004766 459 KDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKK 538 (732)
Q Consensus 459 ~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~ 538 (732)
.+| .. .+.+++|... .+.|+||++||+.+... .|. .+...|+++||.|+++|+||.|+....
T Consensus 79 ~~g-~~-~~~~~~p~~~---~~~p~vv~~HG~~~~~~--~~~-~~~~~la~~G~~vv~~d~~g~g~s~~~---------- 140 (306)
T 3vis_A 79 ADG-FG-GGTIYYPREN---NTYGAIAISPGYTGTQS--SIA-WLGERIASHGFVVIAIDTNTTLDQPDS---------- 140 (306)
T ss_dssp CSS-SC-CEEEEEESSC---SCEEEEEEECCTTCCHH--HHH-HHHHHHHTTTEEEEEECCSSTTCCHHH----------
T ss_pred cCC-Cc-ceEEEeeCCC---CCCCEEEEeCCCcCCHH--HHH-HHHHHHHhCCCEEEEecCCCCCCCcch----------
Confidence 566 33 4677888763 37899999999876532 232 345667769999999999998765322
Q ss_pred ccHHHHHHHHHHHHHHc------CCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCcccccccccCCCCCcccc
Q 004766 539 QNCFDDFISASEYLISA------GYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHAWVS 612 (732)
Q Consensus 539 ~~~~~D~~~~~~~l~~~------~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~~~~~ 612 (732)
..+|+.++++++.+. ..+|++|++++|+|+||.+++.++.++|+ ++++|+..|+..
T Consensus 141 --~~~d~~~~~~~l~~~~~~~~~~~~~~~~v~l~G~S~GG~~a~~~a~~~p~-v~~~v~~~~~~~--------------- 202 (306)
T 3vis_A 141 --RARQLNAALDYMLTDASSAVRNRIDASRLAVMGHSMGGGGTLRLASQRPD-LKAAIPLTPWHL--------------- 202 (306)
T ss_dssp --HHHHHHHHHHHHHHTSCHHHHTTEEEEEEEEEEETHHHHHHHHHHHHCTT-CSEEEEESCCCS---------------
T ss_pred --HHHHHHHHHHHHHhhcchhhhccCCcccEEEEEEChhHHHHHHHHhhCCC-eeEEEEeccccC---------------
Confidence 237899999999987 67889999999999999999999999998 888888777432
Q ss_pred ccCCCCCHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCch-HHHHHHHHHHHhhcCCCCCCCCCCC
Q 004766 613 DFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPL-HSLKLLATMQYVLCTSLENSPQTNP 691 (732)
Q Consensus 613 ~~g~p~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~-~~~~~~~~l~~~~~~~~~~~~~~~~ 691 (732)
...+.+ +.+|+|+++|.+|..||+. ++.+++++++.. + +
T Consensus 203 -------------------~~~~~~----------~~~P~lii~G~~D~~~~~~~~~~~~~~~l~~~----------~-~ 242 (306)
T 3vis_A 203 -------------------NKSWRD----------ITVPTLIIGAEYDTIASVTLHSKPFYNSIPSP----------T-D 242 (306)
T ss_dssp -------------------CCCCTT----------CCSCEEEEEETTCSSSCTTTTHHHHHHTCCTT----------S-C
T ss_pred -------------------cccccc----------CCCCEEEEecCCCcccCcchhHHHHHHHhccC----------C-C
Confidence 011222 6789999999999999998 699998888754 4 8
Q ss_pred EEEEEeCCCCCCCCCchHHHHHHHHHHHHHHHHHhCCC
Q 004766 692 IIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLGAS 729 (732)
Q Consensus 692 ~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~~ 729 (732)
+++++++++||++..... .+....+.+||.++++..
T Consensus 243 ~~~~~~~g~gH~~~~~~~--~~~~~~i~~fl~~~l~~~ 278 (306)
T 3vis_A 243 KAYLELDGASHFAPNITN--KTIGMYSVAWLKRFVDED 278 (306)
T ss_dssp EEEEEETTCCTTGGGSCC--HHHHHHHHHHHHHHHSCC
T ss_pred ceEEEECCCCccchhhch--hHHHHHHHHHHHHHccCc
Confidence 999999999999764433 345568899999998754
|
| >3hju_A Monoglyceride lipase; alpha/beta hydrolase, hydrolase, serine esterase; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.7e-18 Score=180.66 Aligned_cols=242 Identities=12% Similarity=0.076 Sum_probs=165.3
Q ss_pred CceEEEE-EEEccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCc
Q 004766 448 EFHVHQV-FVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYG 526 (732)
Q Consensus 448 ~~~~~~~-~~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g 526 (732)
.+..+++ .+.+.|| .+|.+.++.|.+ ++.|+||++||+.+... .|. .+...|.++||.|+++|+||.|...
T Consensus 31 ~~~~~~~~~~~~~dg-~~l~~~~~~p~~----~~~p~vv~~HG~~~~~~--~~~-~~~~~l~~~g~~vi~~D~~G~G~S~ 102 (342)
T 3hju_A 31 SIPYQDLPHLVNADG-QYLFCRYWKPTG----TPKALIFVSHGAGEHSG--RYE-ELARMLMGLDLLVFAHDHVGHGQSE 102 (342)
T ss_dssp SCBTTSSCEEECTTS-CEEEEEEECCSS----CCSEEEEEECCTTCCGG--GGH-HHHHHHHTTTEEEEEECCTTSTTSC
T ss_pred CcccccCceEEccCC-eEEEEEEeCCCC----CCCcEEEEECCCCcccc--hHH-HHHHHHHhCCCeEEEEcCCCCcCCC
Confidence 3333444 6778899 999999998864 56799999999876543 343 3456667689999999999988654
Q ss_pred hhHHhcccccCCccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCccccccccc---
Q 004766 527 EEWHKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHK--- 603 (732)
Q Consensus 527 ~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~--- 603 (732)
... .....-....+|+.+++++|..+ .+.++++++|+|+||++++.++.++|++++++|+..|+.+......
T Consensus 103 ~~~---~~~~~~~~~~~d~~~~l~~l~~~--~~~~~v~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~ 177 (342)
T 3hju_A 103 GER---MVVSDFHVFVRDVLQHVDSMQKD--YPGLPVFLLGHSMGGAIAILTAAERPGHFAGMVLISPLVLANPESATTF 177 (342)
T ss_dssp SST---TCCSCTHHHHHHHHHHHHHHHHH--STTCCEEEEEETHHHHHHHHHHHHSTTTCSEEEEESCCCSCCTTTTSHH
T ss_pred CcC---CCcCcHHHHHHHHHHHHHHHHHh--CCCCcEEEEEeChHHHHHHHHHHhCccccceEEEECcccccchhhhhHH
Confidence 211 11112233478999999999877 4567999999999999999999999999999999999865432110
Q ss_pred --------------CCCCCccccccCCCCCHHHHHHHHhcCcc----------------------cCCCCCCCCCCCCCC
Q 004766 604 --------------FTIGHAWVSDFGCSEEEEEFYWLIKYSPL----------------------HNVRRPWEQNPDKPF 647 (732)
Q Consensus 604 --------------~~~~~~~~~~~g~p~~~~~~~~~~~~sp~----------------------~~~~~~~~~~~~~~~ 647 (732)
..... ....+. ..+......+.. .|+ ..+.+
T Consensus 178 ~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 244 (342)
T 3hju_A 178 KVLAAKVLNLVLPNLSLGP-IDSSVL-SRNKTEVDIYNS-DPLICRAGLKVCFGIQLLNAVSRVERALPK---------- 244 (342)
T ss_dssp HHHHHHHHHHHCTTCBCCC-CCGGGS-CSCHHHHHHHHT-CTTCCCSCCBHHHHHHHHHHHHHHHHHGGG----------
T ss_pred HHHHHHHHHHhccccccCc-cccccc-ccchHHHHHHhc-CcccccccccHHHHHHHHHHHHHHHHHHHh----------
Confidence 00000 000000 011222211111 111 12222
Q ss_pred CCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeCCCCCCCCCch-HHHHHHHHHHHHHHHHHh
Q 004766 648 QYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPT-QKMIDEAADRYGFMAKML 726 (732)
Q Consensus 648 ~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~-~~~~~~~~~~~~fl~~~l 726 (732)
+.+|+|+++|.+|..|++.++.++++.+. +..+++++++++||.+.... ....+....+++||.+++
T Consensus 245 i~~Pvlii~G~~D~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~~~l~~~~ 312 (342)
T 3hju_A 245 LTVPFLLLQGSADRLCDSKGAYLLMELAK------------SQDKTLKIYEGAYHVLHKELPEVTNSVFHEINMWVSQRT 312 (342)
T ss_dssp CCSCEEEEEETTCSSSCHHHHHHHHHHCC------------CSSEEEEEETTCCSCGGGSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCcCEEEEEeCCCcccChHHHHHHHHHcC------------CCCceEEEECCCCchhhcCChHHHHHHHHHHHHHHhccc
Confidence 68899999999999999998888877764 23578999999999976432 223466677899999887
Q ss_pred C
Q 004766 727 G 727 (732)
Q Consensus 727 ~ 727 (732)
.
T Consensus 313 ~ 313 (342)
T 3hju_A 313 A 313 (342)
T ss_dssp H
T ss_pred C
Confidence 4
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.80 E-value=7.5e-17 Score=174.57 Aligned_cols=263 Identities=16% Similarity=0.086 Sum_probs=180.2
Q ss_pred CCEEEEEEEcCCCC-eeEEEEEeCCCCCceEEeCCCCcCCCCCEEEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCC
Q 004766 90 GNKYFYFHNTGLQP-QSVLYVQDSLDAKAKVLLDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQ 168 (732)
Q Consensus 90 g~~~~~~~~~~~~~-~~~l~~r~~~~~~~~~l~D~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g 168 (732)
+.+++|.....+.. ...|++.+..++..+.|.... ..+..++|||||++|||+...+|. .+|++||+++|
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~~l~~~~-------~~v~~~~~Spdg~~la~~s~~~~~--~~i~~~d~~tg 213 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSP-------QPLMSPAWSPDGSKLAYVTFESGR--SALVIQTLANG 213 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEETTSCSCEEEEEES-------SCEEEEEECTTSSEEEEEECTTSS--CEEEEEETTTC
T ss_pred CCEEEEEEecCCCCccceEEEEcCCCCCCEEEeCCC-------CcceeeEEcCCCCEEEEEEecCCC--cEEEEEECCCC
Confidence 56777776643321 245777765444445554322 125689999999999999865543 58999999999
Q ss_pred ceecccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEe
Q 004766 169 IVEADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSG 248 (732)
Q Consensus 169 ~~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~ 248 (732)
+.............++|||||+.|+|+.... ....||++++.++... .+. ........+
T Consensus 214 ~~~~l~~~~~~~~~~~~spdg~~la~~~~~~----------------g~~~i~~~d~~~~~~~--~l~---~~~~~~~~~ 272 (415)
T 2hqs_A 214 AVRQVASFPRHNGAPAFSPDGSKLAFALSKT----------------GSLNLYVMDLASGQIR--QVT---DGRSNNTEP 272 (415)
T ss_dssp CEEEEECCSSCEEEEEECTTSSEEEEEECTT----------------SSCEEEEEETTTCCEE--ECC---CCSSCEEEE
T ss_pred cEEEeecCCCcccCEEEcCCCCEEEEEEecC----------------CCceEEEEECCCCCEE--eCc---CCCCcccce
Confidence 8654322222347899999999999886432 2347999999876431 222 223355689
Q ss_pred EEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCCCCcEEeeeccc-ceEEEEEecCCeEEEEeCCCCCCc
Q 004766 249 HVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFD-AQYEVIANDDTVFTFLTNKDAPKY 327 (732)
Q Consensus 249 ~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~s~dg~~l~~~s~~~~~~~ 327 (732)
.|||||++|++.+.+.. ...||++|+.++. ...++.... .....|+|||+.|++.+..++ ..
T Consensus 273 ~~spdg~~l~~~s~~~g--~~~i~~~d~~~~~--------------~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g-~~ 335 (415)
T 2hqs_A 273 TWFPDSQNLAFTSDQAG--RPQVYKVNINGGA--------------PQRITWEGSQNQDADVSSDGKFMVMVSSNGG-QQ 335 (415)
T ss_dssp EECTTSSEEEEEECTTS--SCEEEEEETTSSC--------------CEECCCSSSEEEEEEECTTSSEEEEEEECSS-CE
T ss_pred EECCCCCEEEEEECCCC--CcEEEEEECCCCC--------------EEEEecCCCcccCeEECCCCCEEEEEECcCC-ce
Confidence 99999999999875433 4579999998743 223322211 122369999999998876543 57
Q ss_pred eEEEEeCCCCCCceEeccCCCCCceeEEEEecCC-EEEEEEecCCeeEEEEEeCCCCceeeecccccceeeEeecccC
Q 004766 328 KIIRVDLKEPNDWFEVIPEAERDVLESATAVNLN-QMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARRE 404 (732)
Q Consensus 328 ~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~-~l~~~~~~~g~~~l~~~d~~~g~~~~~l~~~~g~v~~~~~s~d 404 (732)
.|+.+|++++. ...+..+ ..+..+.|++++ .|++....++...|++||++ |+..+.|+.+.+.+..++++|.
T Consensus 336 ~i~~~d~~~~~-~~~l~~~---~~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~-g~~~~~l~~~~~~v~~~~~~~~ 408 (415)
T 2hqs_A 336 HIAKQDLATGG-VQVLSST---FLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDGQVKFPAWSPY 408 (415)
T ss_dssp EEEEEETTTCC-EEECCCS---SSCEEEEECTTSSEEEEEEEETTEEEEEEEETT-SCCEEECCCSSSEEEEEEECCC
T ss_pred EEEEEECCCCC-EEEecCC---CCcCCeEEcCCCCEEEEEEcCCCccEEEEEECC-CCcEEEeeCCCCCCcCCccccc
Confidence 89999999876 4444433 256788999864 56677777777899999997 5555788777788888888764
|
| >3h04_A Uncharacterized protein; protein with unknown function, structural genomics, MCSG, PS protein structure initiative; 1.90A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.80 E-value=3e-18 Score=173.43 Aligned_cols=241 Identities=13% Similarity=0.049 Sum_probs=156.6
Q ss_pred EEEEEEccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCcc-CCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHH
Q 004766 452 HQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNIS-VTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWH 530 (732)
Q Consensus 452 ~~~~~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~-~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~ 530 (732)
.+..+.+.|| .++++.++.|++ .++.|+||++||+.... ....|...+..++++. |.|+++|+||+++...
T Consensus 4 ~~~~~~~~dg-~~l~~~~~~p~~---~~~~~~vv~~HG~~~~~~~~~~~~~~~~~~l~~~-~~v~~~d~~~~~~~~~--- 75 (275)
T 3h04_A 4 IKYKVITKDA-FALPYTIIKAKN---QPTKGVIVYIHGGGLMFGKANDLSPQYIDILTEH-YDLIQLSYRLLPEVSL--- 75 (275)
T ss_dssp EEEEEECTTS-CEEEEEEECCSS---SSCSEEEEEECCSTTTSCCTTCSCHHHHHHHTTT-EEEEEECCCCTTTSCH---
T ss_pred eEEEEecCCc-EEEEEEEEccCC---CCCCCEEEEEECCcccCCchhhhHHHHHHHHHhC-ceEEeeccccCCcccc---
Confidence 4566788899 999999998874 35789999999987322 2233444566778744 9999999999875422
Q ss_pred hcccccCCccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCccccccccc-CC----
Q 004766 531 KGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHK-FT---- 605 (732)
Q Consensus 531 ~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~-~~---- 605 (732)
...++|+.++++++.++ .+.++++++|+|+||++++.++.+ +.++++|+.+|+.++..... ..
T Consensus 76 --------~~~~~d~~~~~~~l~~~--~~~~~i~l~G~S~Gg~~a~~~a~~--~~v~~~v~~~~~~~~~~~~~~~~~~~~ 143 (275)
T 3h04_A 76 --------DCIIEDVYASFDAIQSQ--YSNCPIFTFGRSSGAYLSLLIARD--RDIDGVIDFYGYSRINTEPFKTTNSYY 143 (275)
T ss_dssp --------HHHHHHHHHHHHHHHHT--TTTSCEEEEEETHHHHHHHHHHHH--SCCSEEEEESCCSCSCSHHHHSCCHHH
T ss_pred --------chhHHHHHHHHHHHHhh--CCCCCEEEEEecHHHHHHHHHhcc--CCccEEEeccccccccccccccccchh
Confidence 33578999999999987 567899999999999999999998 78999999999887632110 00
Q ss_pred ------CCCccccc------cC-CCC--CHHHHHHHHhcCc----ccCCCCC---CCCCCC-CCCCCCeEEEEeeCCCCC
Q 004766 606 ------IGHAWVSD------FG-CSE--EEEEFYWLIKYSP----LHNVRRP---WEQNPD-KPFQYPSTLLLTADHDDR 662 (732)
Q Consensus 606 ------~~~~~~~~------~g-~p~--~~~~~~~~~~~sp----~~~~~~~---~~~~~~-~~~~~~p~Li~~g~~D~~ 662 (732)
........ .. .+. ....+........ +...... +..... ...+. |+||++|++|..
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-P~lii~G~~D~~ 222 (275)
T 3h04_A 144 AKIAQSINETMIAQLTSPTPVVQDQIAQRFLIYVYARGTGKWINMINIADYTDSKYNIAPDELKTLP-PVFIAHCNGDYD 222 (275)
T ss_dssp HHHHTTSCHHHHHTTSCSSCCSSCSSGGGHHHHHHHHHHTCHHHHHCCSCTTSGGGSCCHHHHTTCC-CEEEEEETTCSS
T ss_pred hcccccchHHHHhcccCCCCcCCCccccchhhhhhhhhcCchHHhhccccccccccccccchhccCC-CEEEEecCCCCC
Confidence 00000000 00 000 0001100011000 0000000 000000 00134 999999999999
Q ss_pred CCchHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeCCCCCCCCCchH-HHHHHHHHHHHHHHHHhC
Q 004766 663 VVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQ-KMIDEAADRYGFMAKMLG 727 (732)
Q Consensus 663 v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~-~~~~~~~~~~~fl~~~l~ 727 (732)
||+.++.++++++. ...+++++++||.+..... ...+....+.+||.++|.
T Consensus 223 ~~~~~~~~~~~~~~--------------~~~~~~~~~~~H~~~~~~~~~~~~~~~~i~~fl~~~l~ 274 (275)
T 3h04_A 223 VPVEESEHIMNHVP--------------HSTFERVNKNEHDFDRRPNDEAITIYRKVVDFLNAITM 274 (275)
T ss_dssp SCTHHHHHHHTTCS--------------SEEEEEECSSCSCTTSSCCHHHHHHHHHHHHHHHHHHC
T ss_pred CChHHHHHHHHhcC--------------CceEEEeCCCCCCcccCCchhHHHHHHHHHHHHHHHhc
Confidence 99999888876543 3469999999999764322 124667788999998874
|
| >4fbl_A LIPS lipolytic enzyme; thermostable, structural genomics, enzyme function initiativ structural proteomics in europe, spine; HET: SPD; 1.99A {Unidentified} PDB: 4fbm_A | Back alignment and structure |
|---|
Probab=99.79 E-value=7.2e-19 Score=179.83 Aligned_cols=213 Identities=17% Similarity=0.117 Sum_probs=139.7
Q ss_pred CCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCccHHHHHHHHHHHHHHcCCC
Q 004766 479 GSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYT 558 (732)
Q Consensus 479 ~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~ 558 (732)
|..+.||++||..++.. .|.. +...|+++||.|+++|+||.|.......... -..-.+|+.+++++|.+.
T Consensus 49 G~~~~VlllHG~~~s~~--~~~~-la~~La~~Gy~Via~Dl~GhG~S~~~~~~~~----~~~~~~d~~~~~~~l~~~--- 118 (281)
T 4fbl_A 49 GSRIGVLVSHGFTGSPQ--SMRF-LAEGFARAGYTVATPRLTGHGTTPAEMAAST----ASDWTADIVAAMRWLEER--- 118 (281)
T ss_dssp CSSEEEEEECCTTCCGG--GGHH-HHHHHHHTTCEEEECCCTTSSSCHHHHHTCC----HHHHHHHHHHHHHHHHHH---
T ss_pred CCCceEEEECCCCCCHH--HHHH-HHHHHHHCCCEEEEECCCCCCCCCccccCCC----HHHHHHHHHHHHHHHHhC---
Confidence 45567999999766542 3333 4566776999999999999887644332211 112357888888888764
Q ss_pred CCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCcccccccc----cC-CCCCcc------------ccccCCCCCH-
Q 004766 559 QSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYH----KF-TIGHAW------------VSDFGCSEEE- 620 (732)
Q Consensus 559 d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~----~~-~~~~~~------------~~~~g~p~~~- 620 (732)
.+++.++|+|+||++++.++.++|++++++|+..|...+.... .+ .....+ ..++..+..+
T Consensus 119 -~~~v~lvG~S~GG~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (281)
T 4fbl_A 119 -CDVLFMTGLSMGGALTVWAAGQFPERFAGIMPINAALRMESPDLAALAFNPDAPAELPGIGSDIKAEGVKELAYPVTPV 197 (281)
T ss_dssp -CSEEEEEEETHHHHHHHHHHHHSTTTCSEEEEESCCSCCCCHHHHHHHTCTTCCSEEECCCCCCSSTTCCCCCCSEEEG
T ss_pred -CCeEEEEEECcchHHHHHHHHhCchhhhhhhcccchhcccchhhHHHHHhHhhHHhhhcchhhhhhHHHHHhhhccCch
Confidence 3689999999999999999999999999999998876542210 00 000000 0111111100
Q ss_pred HHHHHHHhcCc--ccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeC
Q 004766 621 EEFYWLIKYSP--LHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIER 698 (732)
Q Consensus 621 ~~~~~~~~~sp--~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 698 (732)
.....+..... -..+.+ +..|+||+||.+|..||+.++.++++++. +.++++++++
T Consensus 198 ~~~~~~~~~~~~~~~~l~~----------i~~P~Lii~G~~D~~v~~~~~~~l~~~l~------------~~~~~l~~~~ 255 (281)
T 4fbl_A 198 PAIKHLITIGAVAEMLLPR----------VKCPALIIQSREDHVVPPHNGELIYNGIG------------STEKELLWLE 255 (281)
T ss_dssp GGHHHHHHHHHHHHHHGGG----------CCSCEEEEEESSCSSSCTHHHHHHHHHCC------------CSSEEEEEES
T ss_pred HHHHHHHHhhhhccccccc----------cCCCEEEEEeCCCCCcCHHHHHHHHHhCC------------CCCcEEEEEC
Confidence 00111111000 011222 78899999999999999999999888765 4567999999
Q ss_pred CCCCCCCCchHHHHHHHHHHHHHHHHH
Q 004766 699 KAGHGVGLPTQKMIDEAADRYGFMAKM 725 (732)
Q Consensus 699 ~~gH~~~~~~~~~~~~~~~~~~fl~~~ 725 (732)
++||....... .....+.+.+||.+|
T Consensus 256 ~~gH~~~~e~~-~e~v~~~i~~FL~~H 281 (281)
T 4fbl_A 256 NSYHVATLDND-KELILERSLAFIRKH 281 (281)
T ss_dssp SCCSCGGGSTT-HHHHHHHHHHHHHTC
T ss_pred CCCCcCccccC-HHHHHHHHHHHHHhC
Confidence 99998654332 234567789999875
|
| >2pbl_A Putative esterase/lipase/thioesterase; alpha/beta-hydrolases fold, structural genomics, joint cente structural genomics, JCSG; 1.79A {Silicibacter SP} SCOP: c.69.1.2 | Back alignment and structure |
|---|
Probab=99.79 E-value=8.3e-19 Score=177.28 Aligned_cols=200 Identities=12% Similarity=0.055 Sum_probs=147.1
Q ss_pred EEEEccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCc-cCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhc
Q 004766 454 VFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNI-SVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKG 532 (732)
Q Consensus 454 ~~~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~-~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~ 532 (732)
..++-.+| ..+++.++.|++ ++.|+||++|||... .....|.. +...|+++||.|+++|+||++++.
T Consensus 41 ~~i~~~~~-~~~~~~~~~p~~----~~~p~vv~~HGgg~~~~~~~~~~~-~~~~l~~~G~~v~~~d~~~~~~~~------ 108 (262)
T 2pbl_A 41 LNLSYGEG-DRHKFDLFLPEG----TPVGLFVFVHGGYWMAFDKSSWSH-LAVGALSKGWAVAMPSYELCPEVR------ 108 (262)
T ss_dssp EEEESSSS-TTCEEEEECCSS----SCSEEEEEECCSTTTSCCGGGCGG-GGHHHHHTTEEEEEECCCCTTTSC------
T ss_pred cccccCCC-CCceEEEEccCC----CCCCEEEEEcCcccccCChHHHHH-HHHHHHhCCCEEEEeCCCCCCCCC------
Confidence 34444566 678888888875 578999999997522 22223433 344565599999999999987532
Q ss_pred ccccCCccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhC------CCeeeEEEEcCCcccccccccCCC
Q 004766 533 GALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQR------PDLFGCALAHVGVMDMLRYHKFTI 606 (732)
Q Consensus 533 ~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~------p~~f~a~v~~~p~~d~~~~~~~~~ 606 (732)
.....+|+.+++++|..+.. ++++++|+|+||++++.++.++ |++++++|+.+|+.++......
T Consensus 109 -----~~~~~~d~~~~~~~l~~~~~---~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~~v~~~vl~~~~~~~~~~~~~-- 178 (262)
T 2pbl_A 109 -----ISEITQQISQAVTAAAKEID---GPIVLAGHSAGGHLVARMLDPEVLPEAVGARIRNVVPISPLSDLRPLLRT-- 178 (262)
T ss_dssp -----HHHHHHHHHHHHHHHHHHSC---SCEEEEEETHHHHHHHHTTCTTTSCHHHHTTEEEEEEESCCCCCGGGGGS--
T ss_pred -----hHHHHHHHHHHHHHHHHhcc---CCEEEEEECHHHHHHHHHhccccccccccccceEEEEecCccCchHHHhh--
Confidence 12346899999999987643 6999999999999999999887 8999999999998876443221
Q ss_pred CCccccccCCCCCHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhcCCCCCC
Q 004766 607 GHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENS 686 (732)
Q Consensus 607 ~~~~~~~~g~p~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~ 686 (732)
.+...++. .. ..+...+|...+.. +.+|+|++||.+|..|++.++.++++++.
T Consensus 179 --~~~~~~~~--~~---~~~~~~~~~~~~~~----------~~~P~lii~G~~D~~~~~~~~~~~~~~~~---------- 231 (262)
T 2pbl_A 179 --SMNEKFKM--DA---DAAIAESPVEMQNR----------YDAKVTVWVGGAERPAFLDQAIWLVEAWD---------- 231 (262)
T ss_dssp --TTHHHHCC--CH---HHHHHTCGGGCCCC----------CSCEEEEEEETTSCHHHHHHHHHHHHHHT----------
T ss_pred --hhhhhhCC--CH---HHHHhcCcccccCC----------CCCCEEEEEeCCCCcccHHHHHHHHHHhC----------
Confidence 01111111 12 22456788877665 78999999999999999999999888764
Q ss_pred CCCCCEEEEEeCCCCCCCCCc
Q 004766 687 PQTNPIIGRIERKAGHGVGLP 707 (732)
Q Consensus 687 ~~~~~~~~~~~~~~gH~~~~~ 707 (732)
+++++++++||.....
T Consensus 232 -----~~~~~~~~~~H~~~~~ 247 (262)
T 2pbl_A 232 -----ADHVIAFEKHHFNVIE 247 (262)
T ss_dssp -----CEEEEETTCCTTTTTG
T ss_pred -----CeEEEeCCCCcchHHh
Confidence 4889999999987643
|
| >3d7r_A Esterase; alpha/beta fold, hydrolase; 2.01A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.9e-18 Score=180.73 Aligned_cols=222 Identities=13% Similarity=0.056 Sum_probs=149.7
Q ss_pred EEEEEEEcCCCCCCCCccEEEEEcCCCCccC-CCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCccHHH
Q 004766 465 IPMFIVSKKNIKLDGSHPCLLYGYGGFNISV-TPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFD 543 (732)
Q Consensus 465 i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~-~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~ 543 (732)
++++++.|.+ ++.|+||++|||..... ...|......+..+.||.|+++|+||+++... ...++
T Consensus 84 ~~~~~~~p~~----~~~p~vv~lHGgg~~~~~~~~~~~~~~~la~~~g~~vi~~D~r~~~~~~~-----------~~~~~ 148 (326)
T 3d7r_A 84 MQVFRFNFRH----QIDKKILYIHGGFNALQPSPFHWRLLDKITLSTLYEVVLPIYPKTPEFHI-----------DDTFQ 148 (326)
T ss_dssp EEEEEEESTT----CCSSEEEEECCSTTTSCCCHHHHHHHHHHHHHHCSEEEEECCCCTTTSCH-----------HHHHH
T ss_pred EEEEEEeeCC----CCCeEEEEECCCcccCCCCHHHHHHHHHHHHHhCCEEEEEeCCCCCCCCc-----------hHHHH
Confidence 5567777764 46799999999854322 22233333344444699999999999775321 23579
Q ss_pred HHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCe----eeEEEEcCCcccccccccCCCCCccccccCCCCC
Q 004766 544 DFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDL----FGCALAHVGVMDMLRYHKFTIGHAWVSDFGCSEE 619 (732)
Q Consensus 544 D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~----f~a~v~~~p~~d~~~~~~~~~~~~~~~~~g~p~~ 619 (732)
|+.+++++|.++ .++++++|+|+|+||++++.++.++|+. ++++|+.+|+.++........ ... ........
T Consensus 149 d~~~~~~~l~~~--~~~~~i~l~G~S~GG~lAl~~a~~~~~~~~~~v~~lvl~~p~~~~~~~~~~~~-~~~-~~~~~~~~ 224 (326)
T 3d7r_A 149 AIQRVYDQLVSE--VGHQNVVVMGDGSGGALALSFVQSLLDNQQPLPNKLYLISPILDATLSNKDIS-DAL-IEQDAVLS 224 (326)
T ss_dssp HHHHHHHHHHHH--HCGGGEEEEEETHHHHHHHHHHHHHHHTTCCCCSEEEEESCCCCTTCCCTTCC-HHH-HHHCSSCC
T ss_pred HHHHHHHHHHhc--cCCCcEEEEEECHHHHHHHHHHHHHHhcCCCCCCeEEEECcccccCcCChhHH-hhh-cccCcccC
Confidence 999999999987 7889999999999999999999887776 999999999887643211000 000 00000001
Q ss_pred HHHHH----HHH--------hcCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhcCCCCCCC
Q 004766 620 EEEFY----WLI--------KYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSP 687 (732)
Q Consensus 620 ~~~~~----~~~--------~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~ 687 (732)
..... .+. ..+|+...- ...+|+||++|++|. +..++.+++++|++.
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~P~lii~G~~D~--~~~~~~~~~~~l~~~--------- 283 (326)
T 3d7r_A 225 QFGVNEIMKKWANGLPLTDKRISPINGTI----------EGLPPVYMFGGGREM--THPDMKLFEQMMLQH--------- 283 (326)
T ss_dssp HHHHHHHHHHHHTTSCTTSTTTSGGGSCC----------TTCCCEEEEEETTST--THHHHHHHHHHHHHT---------
T ss_pred HHHHHHHHHHhcCCCCCCCCeECcccCCc----------ccCCCEEEEEeCccc--chHHHHHHHHHHHHC---------
Confidence 11111 111 123333211 145799999999996 455788999999987
Q ss_pred CCCCEEEEEeCCCCCCCCC-chHHHHHHHHHHHHHHHHHhC
Q 004766 688 QTNPIIGRIERKAGHGVGL-PTQKMIDEAADRYGFMAKMLG 727 (732)
Q Consensus 688 ~~~~~~~~~~~~~gH~~~~-~~~~~~~~~~~~~~fl~~~l~ 727 (732)
+.++++++++++||++.. +..+..+....+.+||.+++.
T Consensus 284 -~~~~~~~~~~g~~H~~~~~~~~~~~~~~~~i~~fl~~~l~ 323 (326)
T 3d7r_A 284 -HQYIEFYDYPKMVHDFPIYPIRQSHKAIKQIAKSIDEDVT 323 (326)
T ss_dssp -TCCEEEEEETTCCTTGGGSSSHHHHHHHHHHHHHHTSCCC
T ss_pred -CCcEEEEEeCCCcccccccCCHHHHHHHHHHHHHHHHHhh
Confidence 889999999999998754 112234677788999987765
|
| >1r88_A MPT51/MPB51 antigen; ALFA/beta hydrolase fold, FBPC1, immune system; 1.71A {Mycobacterium tuberculosis} SCOP: c.69.1.3 | Back alignment and structure |
|---|
Probab=99.78 E-value=6.7e-19 Score=179.80 Aligned_cols=240 Identities=13% Similarity=0.072 Sum_probs=159.0
Q ss_pred ceEEEEEEEcc-CCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcCh--hHHHHHHhcCcEEEEEcccCCCCC
Q 004766 449 FHVHQVFVPSK-DGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSV--SRTILMRHLGAVFCIANIRGGGEY 525 (732)
Q Consensus 449 ~~~~~~~~~s~-dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~--~~~~~l~~~G~~v~~~~~rG~g~~ 525 (732)
...+.+.+.|. +| .+++++ +.|++ .|+||++||+.+......|.. .+..+++++|++|+++|.++++.|
T Consensus 9 ~~~~~~~~~S~~~~-~~~~~~-~~P~~------~p~vvllHG~~~~~~~~~w~~~~~~~~~~~~~~~~vv~pd~~~~~~~ 80 (280)
T 1r88_A 9 APYENLMVPSPSMG-RDIPVA-FLAGG------PHAVYLLDAFNAGPDVSNWVTAGNAMNTLAGKGISVVAPAGGAYSMY 80 (280)
T ss_dssp CCCEEEEEEETTTT-EEEEEE-EECCS------SSEEEEECCSSCCSSSCHHHHTSCHHHHHTTSSSEEEEECCCTTSTT
T ss_pred CCEEEEEEECcccC-CcceEE-EeCCC------CCEEEEECCCCCCCChhhhhhcccHHHHHhcCCeEEEEECCCCCCcc
Confidence 35567777775 78 899999 77764 289999999853222222322 234667778999999999876544
Q ss_pred chhHHhcccccCCccHHHHHH--HHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCccccccccc
Q 004766 526 GEEWHKGGALAKKQNCFDDFI--SASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHK 603 (732)
Q Consensus 526 g~~~~~~~~~~~~~~~~~D~~--~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~ 603 (732)
. .|..... ..+.+++ +++.++.++--+++++++|+|+||||++++.++.++|++|+++|+.+|.+++.....
T Consensus 81 ~-~~~~~~~-----~~~~~~~~~~l~~~i~~~~~~~~~~~~l~G~S~GG~~al~~a~~~p~~~~~~v~~sg~~~~~~~~~ 154 (280)
T 1r88_A 81 T-NWEQDGS-----KQWDTFLSAELPDWLAANRGLAPGGHAAVGAAQGGYGAMALAAFHPDRFGFAGSMSGFLYPSNTTT 154 (280)
T ss_dssp S-BCSSCTT-----CBHHHHHHTHHHHHHHHHSCCCSSCEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCCCTTSHHH
T ss_pred C-CCCCCCC-----CcHHHHHHHHHHHHHHHHCCCCCCceEEEEECHHHHHHHHHHHhCccceeEEEEECCccCcCCccc
Confidence 1 1211110 1233322 334444443336788999999999999999999999999999999999887533110
Q ss_pred ---------CCCCCccccccCCCCCHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEe----eCCCCC-------C
Q 004766 604 ---------FTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLT----ADHDDR-------V 663 (732)
Q Consensus 604 ---------~~~~~~~~~~~g~p~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~----g~~D~~-------v 663 (732)
......+...||.+... .+.+.+|+.++++.. ...+|+||.| |.+|.+ |
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~g~~~~~----~~~~~~p~~~~~~~~-------~~~~pv~i~~~~~~G~~D~~~~~~~~~~ 223 (280)
T 1r88_A 155 NGAIAAGMQQFGGVDTNGMWGAPQLG----RWKWHDPWVHASLLA-------QNNTRVWVWSPTNPGASDPAAMIGQAAE 223 (280)
T ss_dssp HHHHHHHHHHHHCCCTHHHHCCGGGS----TTGGGCTTTTHHHHH-------HTTCEEEEECCSSCCCSSGGGGTTCHHH
T ss_pred hhhHHHHhhhccccchhhhcCCCchh----hhHhcCHHHHHHhhh-------ccCCeEEEEeccCCCCCCcccccchhHH
Confidence 00000112234554321 234567776654410 0257999999 999985 6
Q ss_pred CchHHHHHHHHHHHhhcCCCCCCCCC-CCEEEEEeCCCCCCCCCchHHHHHHHHHHHHHHHHHhC
Q 004766 664 VPLHSLKLLATMQYVLCTSLENSPQT-NPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLG 727 (732)
Q Consensus 664 ~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 727 (732)
++.++.+++++|++. | .++++.++++++|.+.. +...+...+.|+.+.|-
T Consensus 224 ~~~~~~~~~~~L~~~----------g~~~~~~~~~~~g~H~~~~----w~~~l~~~l~~~~~~~~ 274 (280)
T 1r88_A 224 AMGNSRMFYNQYRSV----------GGHNGHFDFPASGDNGWGS----WAPQLGAMSGDIVGAIR 274 (280)
T ss_dssp HHHHHHHHHHHHHHT----------TCCSEEEECCSSCCSSHHH----HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHC----------CCcceEEEecCCCCcChhH----HHHHHHHHHHHHHHHHh
Confidence 899999999999987 8 99999999899997532 23455566777776653
|
| >3mve_A FRSA, UPF0255 protein VV1_0328; FRSA,fermentation/respiration switch protein, hydrolase ACTI lyase; 2.20A {Vibrio vulnificus} PDB: 3our_A | Back alignment and structure |
|---|
Probab=99.78 E-value=1.4e-18 Score=187.28 Aligned_cols=235 Identities=10% Similarity=-0.007 Sum_probs=158.9
Q ss_pred ceEEEEEEEccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchh
Q 004766 449 FHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEE 528 (732)
Q Consensus 449 ~~~~~~~~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~ 528 (732)
...+++.++. +| ..|+++++.|++ .++.|+||++||..+... .+...+...+.++||.|+++|+||.|+....
T Consensus 166 ~~~~~v~i~~-~g-~~l~~~~~~P~~---~~~~P~vv~~hG~~~~~~--~~~~~~~~~l~~~G~~V~~~D~~G~G~s~~~ 238 (415)
T 3mve_A 166 YIIKQLEIPF-EK-GKITAHLHLTNT---DKPHPVVIVSAGLDSLQT--DMWRLFRDHLAKHDIAMLTVDMPSVGYSSKY 238 (415)
T ss_dssp SEEEEEEEEC-SS-SEEEEEEEESCS---SSCEEEEEEECCTTSCGG--GGHHHHHHTTGGGTCEEEEECCTTSGGGTTS
T ss_pred CCeEEEEEEE-CC-EEEEEEEEecCC---CCCCCEEEEECCCCccHH--HHHHHHHHHHHhCCCEEEEECCCCCCCCCCC
Confidence 3567788887 77 899999999976 467899999999765432 1222234556569999999999998754221
Q ss_pred HHhcccccCCccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCccccccc-cc--CC
Q 004766 529 WHKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRY-HK--FT 605 (732)
Q Consensus 529 ~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~-~~--~~ 605 (732)
...........++++++.....+|++||+++|+|+||++++.++..+|++++++|+..|+++.... .. ..
T Consensus 239 -------~~~~~~~~~~~~v~~~l~~~~~vd~~~i~l~G~S~GG~~a~~~a~~~~~~v~~~v~~~~~~~~~~~~~~~~~~ 311 (415)
T 3mve_A 239 -------PLTEDYSRLHQAVLNELFSIPYVDHHRVGLIGFRFGGNAMVRLSFLEQEKIKACVILGAPIHDIFASPQKLQQ 311 (415)
T ss_dssp -------CCCSCTTHHHHHHHHHGGGCTTEEEEEEEEEEETHHHHHHHHHHHHTTTTCCEEEEESCCCSHHHHCHHHHTT
T ss_pred -------CCCCCHHHHHHHHHHHHHhCcCCCCCcEEEEEECHHHHHHHHHHHhCCcceeEEEEECCccccccccHHHHHH
Confidence 111112233467788888888889999999999999999999999889999999999998643211 00 00
Q ss_pred CCCc----cccccCCC-CCHH-HHHHHHhcCcccC----CCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHH
Q 004766 606 IGHA----WVSDFGCS-EEEE-EFYWLIKYSPLHN----VRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATM 675 (732)
Q Consensus 606 ~~~~----~~~~~g~p-~~~~-~~~~~~~~sp~~~----~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l 675 (732)
.... +...+|.. .... ....+..+++... +. .+.+|+||++|.+|..||+.++.++++
T Consensus 312 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~i~~PvLii~G~~D~~vp~~~~~~l~~-- 379 (415)
T 3mve_A 312 MPKMYLDVLASRLGKSVVDIYSLSGQMAAWSLKVQGFLSSR----------KTKVPILAMSLEGDPVSPYSDNQMVAF-- 379 (415)
T ss_dssp SCHHHHHHHHHHTTCSSBCHHHHHHHGGGGCTTTTTTTTSS----------CBSSCEEEEEETTCSSSCHHHHHHHHH--
T ss_pred hHHHHHHHHHHHhCCCccCHHHHHHHHhhcCcccccccccC----------CCCCCEEEEEeCCCCCCCHHHHHHHHH--
Confidence 0000 00112322 2222 2223344444322 12 378999999999999999998887665
Q ss_pred HHhhcCCCCCCCCCCCEEEEEeCC-CCCCCCCchHHHHHHHHHHHHHHHHHhC
Q 004766 676 QYVLCTSLENSPQTNPIIGRIERK-AGHGVGLPTQKMIDEAADRYGFMAKMLG 727 (732)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~-~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 727 (732)
. +.+++++++++ .+|. ...+....+.+||.++|.
T Consensus 380 --~----------~~~~~l~~i~g~~~h~------~~~~~~~~i~~fL~~~L~ 414 (415)
T 3mve_A 380 --F----------STYGKAKKISSKTITQ------GYEQSLDLAIKWLEDELL 414 (415)
T ss_dssp --T----------BTTCEEEEECCCSHHH------HHHHHHHHHHHHHHHHHT
T ss_pred --h----------CCCceEEEecCCCccc------chHHHHHHHHHHHHHHhc
Confidence 3 55678899988 2221 224566788999999874
|
| >4fhz_A Phospholipase/carboxylesterase; alpha/beta hydrolase superfamily, central beta-STR sheet, flanked alpha helices, hydrolase; 2.01A {Rhodobacter sphaeroides} PDB: 4ftw_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=8.6e-19 Score=178.11 Aligned_cols=209 Identities=14% Similarity=0.114 Sum_probs=143.2
Q ss_pred ccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHh--cCcEEEEEccc---CCCCCchhHHhc
Q 004766 458 SKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRH--LGAVFCIANIR---GGGEYGEEWHKG 532 (732)
Q Consensus 458 s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~--~G~~v~~~~~r---G~g~~g~~~~~~ 532 (732)
+..+ ++...+..+|.. ++++.|+||++||..+... .|.. +...|.. .++.+++++.+ ...+.|..|+..
T Consensus 46 ~~~~-~~~l~y~~~p~~--~~~~~plVI~LHG~G~~~~--~~~~-~~~~l~~~~~~~~~v~P~Ap~~~~~~~~G~~Wfd~ 119 (285)
T 4fhz_A 46 ADIM-TRKLTFGRRGAA--PGEATSLVVFLHGYGADGA--DLLG-LAEPLAPHLPGTAFVAPDAPEPCRANGFGFQWFPI 119 (285)
T ss_dssp --CC-CCCCCEEEEESC--TTCCSEEEEEECCTTBCHH--HHHT-THHHHGGGSTTEEEEEECCSEECTTSSSCEESSCC
T ss_pred cccc-cccceeecCCCC--CCCCCcEEEEEcCCCCCHH--HHHH-HHHHHHHhCCCeEEEecCCCcccccCCCccccccc
Confidence 3344 444444455543 4678899999999544321 1211 2233332 38899998853 223456667532
Q ss_pred ccccC--Cc-------cHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCccccccccc
Q 004766 533 GALAK--KQ-------NCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHK 603 (732)
Q Consensus 533 ~~~~~--~~-------~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~ 603 (732)
..... .. ....++.+.++.++++.-+|++||+++|+|+||.+++.++.++|+.|+++|+.++.+..
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~id~~ri~l~GfS~Gg~~a~~~a~~~p~~~a~vv~~sG~l~~----- 194 (285)
T 4fhz_A 120 PWLDGSSETAAAEGMAAAARDLDAFLDERLAEEGLPPEALALVGFSQGTMMALHVAPRRAEEIAGIVGFSGRLLA----- 194 (285)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEEEETHHHHHHHHHHHHSSSCCSEEEEESCCCSC-----
T ss_pred ccccCcccchhhHHHHHHHHHHHHHHHHHHHHhCCCccceEEEEeCHHHHHHHHHHHhCcccCceEEEeecCccC-----
Confidence 11111 11 12345666677777666689999999999999999999999999999999987763210
Q ss_pred CCCCCccccccCCCCCHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhcCCC
Q 004766 604 FTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSL 683 (732)
Q Consensus 604 ~~~~~~~~~~~g~p~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~ 683 (732)
++.. .. . . ...+|+|++||++|++||+.++.+++++|+++
T Consensus 195 ----------------~~~~---~~-----~-~----------~~~~Pvl~~hG~~D~~Vp~~~~~~~~~~L~~~----- 234 (285)
T 4fhz_A 195 ----------------PERL---AE-----E-A----------RSKPPVLLVHGDADPVVPFADMSLAGEALAEA----- 234 (285)
T ss_dssp ----------------HHHH---HH-----H-C----------CCCCCEEEEEETTCSSSCTHHHHHHHHHHHHT-----
T ss_pred ----------------chhh---hh-----h-h----------hhcCcccceeeCCCCCcCHHHHHHHHHHHHHC-----
Confidence 1111 00 0 0 14679999999999999999999999999998
Q ss_pred CCCCCCCCEEEEEeCCCCCCCCCchHHHHHHHHHHHHHHHHHhCC
Q 004766 684 ENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLGA 728 (732)
Q Consensus 684 ~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~ 728 (732)
|.++++++|++.||++.. +++.++.+||.++|-.
T Consensus 235 -----g~~~~~~~y~g~gH~i~~------~~l~~~~~fL~~~Lpd 268 (285)
T 4fhz_A 235 -----GFTTYGHVMKGTGHGIAP------DGLSVALAFLKERLPD 268 (285)
T ss_dssp -----TCCEEEEEETTCCSSCCH------HHHHHHHHHHHHHCC-
T ss_pred -----CCCEEEEEECCCCCCCCH------HHHHHHHHHHHHHCcC
Confidence 999999999999998742 3456788999999843
|
| >3og9_A Protein YAHD A copper inducible hydrolase; alpha/beta hydrolase, copper homeostasis, malic acid; 1.88A {Lactococcus lactis subsp} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=99.78 E-value=2.1e-18 Score=167.90 Aligned_cols=184 Identities=13% Similarity=-0.032 Sum_probs=133.2
Q ss_pred CCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhc------ccccC----CccHHHHHHHH
Q 004766 479 GSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKG------GALAK----KQNCFDDFISA 548 (732)
Q Consensus 479 ~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~------~~~~~----~~~~~~D~~~~ 548 (732)
++.| ||++||..+... .|. .+...|. .|+.|+++|.++.+..+..|+.. ..... -....+++.+.
T Consensus 15 ~~~p-vv~lHG~g~~~~--~~~-~~~~~l~-~~~~v~~~~~~~~~~g~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~ 89 (209)
T 3og9_A 15 DLAP-LLLLHSTGGDEH--QLV-EIAEMIA-PSHPILSIRGRINEQGVNRYFKLRGLGGFTKENFDLESLDEETDWLTDE 89 (209)
T ss_dssp TSCC-EEEECCTTCCTT--TTH-HHHHHHS-TTCCEEEECCSBCGGGCCBSSCBCSCTTCSGGGBCHHHHHHHHHHHHHH
T ss_pred CCCC-EEEEeCCCCCHH--HHH-HHHHhcC-CCceEEEecCCcCCCCcccceecccccccccCCCCHHHHHHHHHHHHHH
Confidence 5678 999999766532 333 3456667 89999999976433334445430 00011 11234566666
Q ss_pred HHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCcccccccccCCCCCccccccCCCCCHHHHHHHHh
Q 004766 549 SEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHAWVSDFGCSEEEEEFYWLIK 628 (732)
Q Consensus 549 ~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~ 628 (732)
++.+.++..+|+++++++|+|+||++++.++.++|++++++|+.+|......
T Consensus 90 ~~~~~~~~~~d~~~~~l~G~S~Gg~~a~~~a~~~~~~~~~~v~~~~~~~~~~---------------------------- 141 (209)
T 3og9_A 90 VSLLAEKHDLDVHKMIAIGYSNGANVALNMFLRGKINFDKIIAFHGMQLEDF---------------------------- 141 (209)
T ss_dssp HHHHHHHHTCCGGGCEEEEETHHHHHHHHHHHTTSCCCSEEEEESCCCCCCC----------------------------
T ss_pred HHHHHHhcCCCcceEEEEEECHHHHHHHHHHHhCCcccceEEEECCCCCCcc----------------------------
Confidence 7776666557889999999999999999999999999999999888543100
Q ss_pred cCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeCCCCCCCCCch
Q 004766 629 YSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPT 708 (732)
Q Consensus 629 ~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~ 708 (732)
..... ...+|+|++||.+|..||+.++.+++++|++. +.++++++++ +||++..
T Consensus 142 ---~~~~~----------~~~~p~li~~G~~D~~v~~~~~~~~~~~l~~~----------~~~~~~~~~~-~gH~~~~-- 195 (209)
T 3og9_A 142 ---EQTVQ----------LDDKHVFLSYAPNDMIVPQKNFGDLKGDLEDS----------GCQLEIYESS-LGHQLTQ-- 195 (209)
T ss_dssp ---CCCCC----------CTTCEEEEEECTTCSSSCHHHHHHHHHHHHHT----------TCEEEEEECS-STTSCCH--
T ss_pred ---ccccc----------ccCCCEEEEcCCCCCccCHHHHHHHHHHHHHc----------CCceEEEEcC-CCCcCCH--
Confidence 00011 15789999999999999999999999999988 8899999997 7999842
Q ss_pred HHHHHHHHHHHHHHHHH
Q 004766 709 QKMIDEAADRYGFMAKM 725 (732)
Q Consensus 709 ~~~~~~~~~~~~fl~~~ 725 (732)
+....+.+||.++
T Consensus 196 ----~~~~~~~~~l~~~ 208 (209)
T 3og9_A 196 ----EEVLAAKKWLTET 208 (209)
T ss_dssp ----HHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHhh
Confidence 3345677888764
|
| >4ezi_A Uncharacterized protein; alpha-beta hydrolases fold, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.15A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.78 E-value=2e-18 Score=182.23 Aligned_cols=262 Identities=13% Similarity=0.045 Sum_probs=163.2
Q ss_pred CCceEEEEEEEccC--C-CeeEEEEEEEcCCCCCCCCccEEEEEcCCCCcc-CCCCcC----hhHHHHHH-hcCcEEEEE
Q 004766 447 SEFHVHQVFVPSKD--G-STKIPMFIVSKKNIKLDGSHPCLLYGYGGFNIS-VTPSFS----VSRTILMR-HLGAVFCIA 517 (732)
Q Consensus 447 ~~~~~~~~~~~s~d--G-~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~-~~~~~~----~~~~~~l~-~~G~~v~~~ 517 (732)
......++.|.|.| | ++.+.++++.|++. .++.|+|++.||..+.. ..+++. ......|+ ++||+|+++
T Consensus 39 ~~~~~~~i~Y~s~d~~G~~~~~~g~l~~P~~~--~~~~PvV~~~HG~~~~~~~~ps~~~~~~~~~~~~lal~~Gy~Vv~~ 116 (377)
T 4ezi_A 39 YDLQLYKINYKTQSPDGNLTIASGLVAMPIHP--VGQVGIISYQHGTRFERNDVPSRNNEKNYIYLAAYGNSAGYMTVMP 116 (377)
T ss_dssp CCEEEEEEEEEEECTTSCEEEEEEEEEEESSC--SSCEEEEEEECCCCCSTTCSGGGCCGGGHHHHHHHTTTTCCEEEEE
T ss_pred CCcEEEEEEEEEECCCCCEEEEEEEEEECCCC--CCCCcEEEEeCCCcCCcccCCCcCcccchHHHHHHHHhCCcEEEEe
Confidence 34577888888765 4 24577999999874 47899999999986421 123221 12233344 599999999
Q ss_pred cccCCCCCchhHHhcccccCCccHHHHHHHHHHHHHH-cCCCCCCcEEEEecChhHHHHHHHHhhCC----C-eeeEEEE
Q 004766 518 NIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLIS-AGYTQSRKLCIEGGSNGGLLVGACINQRP----D-LFGCALA 591 (732)
Q Consensus 518 ~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~-~~~~d~~~i~i~G~S~GG~l~~~~~~~~p----~-~f~a~v~ 591 (732)
|+||.|+.+...+.-.........+.|.+.++..+.+ .+..+++||+++|+|+||+++++++.++| + .+.++++
T Consensus 117 D~rG~G~s~~~~~~~~~~~~~~~~~~D~~~a~~~~~~~~g~~~~~~v~l~G~S~GG~~al~~A~~~p~~~~~l~l~g~~~ 196 (377)
T 4ezi_A 117 DYLGLGDNELTLHPYVQAETLASSSIDMLFAAKELANRLHYPISDKLYLAGYSEGGFSTIVMFEMLAKEYPDLPVSAVAP 196 (377)
T ss_dssp CCTTSTTCCCSSCCTTCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEETHHHHHHHHHHHHHHHHCTTSCCCEEEE
T ss_pred CCCCCCCCCCCCcccccchhHHHHHHHHHHHHHHHhhccCCCCCCceEEEEECHHHHHHHHHHHHhhhhCCCCceEEEEe
Confidence 9999987664111000000112334555555554444 46667799999999999999999888654 3 5889999
Q ss_pred cCCcccccccccC---CCC---Cc-----------cccccC------CCCCHHHHH------------------------
Q 004766 592 HVGVMDMLRYHKF---TIG---HA-----------WVSDFG------CSEEEEEFY------------------------ 624 (732)
Q Consensus 592 ~~p~~d~~~~~~~---~~~---~~-----------~~~~~g------~p~~~~~~~------------------------ 624 (732)
..|..|+...... ... .. +..+|. ++.-...++
T Consensus 197 ~~~p~dl~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~yp~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (377)
T 4ezi_A 197 GSAPYGWEETMHFVMLEPGPRATAYLAYFFYSLQTYKSYWSGFDEIFAPPYNTLIPELMDGYHAVDEILQALPQDPLLIF 276 (377)
T ss_dssp ESCCCCHHHHHHHHHHSCCTTHHHHHHHHHHHHHHHHCCSSCHHHHBCTTHHHHHHHHTSSCSCHHHHHHHSCSSGGGGB
T ss_pred cCcccCHHHHHHHHhcCCCcccchhHHHHHHHHHHHHHhccCHHHHhCHHHHHHHHHHhhcccchhhhhhccCCCHHHHh
Confidence 9988876432110 000 00 001111 110000000
Q ss_pred ------HHHh-cCc-ccCC-CCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhcCCCCCCCCCCCEEEE
Q 004766 625 ------WLIK-YSP-LHNV-RRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGR 695 (732)
Q Consensus 625 ------~~~~-~sp-~~~~-~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 695 (732)
.+.. .+| +..+ .+ .+....++.+|+||+||.+|..||+.++.++++++++. |. ++++
T Consensus 277 ~~~~~~~~~~~~~p~~~~~l~~---~~~~~~~~~~Pvli~hG~~D~~Vp~~~~~~l~~~l~~~----------G~-v~~~ 342 (377)
T 4ezi_A 277 QPKFSNGIISKTDRNTEILKIN---FNHYDFKPTAPLLLVGTKGDRDVPYAGAEMAYHSFRKY----------SD-FVWI 342 (377)
T ss_dssp CHHHHHHHHTTCSTTHHHHHHH---HCCCCSCCSSCEEEEECTTCSSSCHHHHHHHHHHHHTT----------CS-CEEE
T ss_pred chhhhhhcccccchHHHHHHHH---hcccCCCCCCCEEEEecCCCCCCCHHHHHHHHHHHHhc----------CC-EEEE
Confidence 0000 011 0000 00 00001147899999999999999999999999999987 88 9999
Q ss_pred EeCC--CCCCCCCchHHHHHHHHHHHHHHHHHhCCC
Q 004766 696 IERK--AGHGVGLPTQKMIDEAADRYGFMAKMLGAS 729 (732)
Q Consensus 696 ~~~~--~gH~~~~~~~~~~~~~~~~~~fl~~~l~~~ 729 (732)
++++ .+|.... .......+.||.++++..
T Consensus 343 ~~~~~~~~H~~~~-----~~~~~~~~~wl~~~~~~~ 373 (377)
T 4ezi_A 343 KSVSDALDHVQAH-----PFVLKEQVDFFKQFERQE 373 (377)
T ss_dssp EESCSSCCTTTTH-----HHHHHHHHHHHHHHHTSS
T ss_pred EcCCCCCCccChH-----HHHHHHHHHHHHHhhcch
Confidence 9999 8998642 345667899999988754
|
| >3llc_A Putative hydrolase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE PG4; 1.80A {Agrobacterium vitis} | Back alignment and structure |
|---|
Probab=99.78 E-value=8.5e-18 Score=169.87 Aligned_cols=236 Identities=14% Similarity=0.146 Sum_probs=152.2
Q ss_pred eEEEEEE-EccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchh
Q 004766 450 HVHQVFV-PSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEE 528 (732)
Q Consensus 450 ~~~~~~~-~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~ 528 (732)
..+.+.+ .+.|| .++.+....+++ ...|+||++||+.+......+. .+..++.++||.|+++|+||.|.....
T Consensus 10 ~~~~~~~~~~~~g-~~l~~~~~~~~~----~~~~~vv~~HG~~~~~~~~~~~-~~~~~l~~~g~~v~~~d~~G~G~s~~~ 83 (270)
T 3llc_A 10 ETHAITVGQGSDA-RSIAALVRAPAQ----DERPTCIWLGGYRSDMTGTKAL-EMDDLAASLGVGAIRFDYSGHGASGGA 83 (270)
T ss_dssp EEEEEEESSGGGC-EEEEEEEECCSS----TTSCEEEEECCTTCCTTSHHHH-HHHHHHHHHTCEEEEECCTTSTTCCSC
T ss_pred CcceEEEeeccCc-ceEEEEeccCCC----CCCCeEEEECCCccccccchHH-HHHHHHHhCCCcEEEeccccCCCCCCc
Confidence 3444555 66799 999887665542 2479999999987653322222 345667668999999999998876433
Q ss_pred HHhcccccCCccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhh---CC---CeeeEEEEcCCcccccccc
Q 004766 529 WHKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQ---RP---DLFGCALAHVGVMDMLRYH 602 (732)
Q Consensus 529 ~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~---~p---~~f~a~v~~~p~~d~~~~~ 602 (732)
.... .-....+|+.++++++ ..+++.++|+|+||.+++.++.+ +| +.++++|+..|..++....
T Consensus 84 ~~~~----~~~~~~~d~~~~~~~l------~~~~~~l~G~S~Gg~~a~~~a~~~~~~p~~~~~v~~~il~~~~~~~~~~~ 153 (270)
T 3llc_A 84 FRDG----TISRWLEEALAVLDHF------KPEKAILVGSSMGGWIALRLIQELKARHDNPTQVSGMVLIAPAPDFTSDL 153 (270)
T ss_dssp GGGC----CHHHHHHHHHHHHHHH------CCSEEEEEEETHHHHHHHHHHHHHHTCSCCSCEEEEEEEESCCTTHHHHT
T ss_pred cccc----cHHHHHHHHHHHHHHh------ccCCeEEEEeChHHHHHHHHHHHHHhccccccccceeEEecCcccchhhh
Confidence 2111 1111234555555554 25799999999999999999999 99 9999999999987654321
Q ss_pred cCC-CCC----------cc--ccccC-CC--CCHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCch
Q 004766 603 KFT-IGH----------AW--VSDFG-CS--EEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPL 666 (732)
Q Consensus 603 ~~~-~~~----------~~--~~~~g-~p--~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~ 666 (732)
... ... .+ ...|. .+ .....+...........+.+ +.+|+|+++|.+|..||+.
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~P~l~i~g~~D~~v~~~ 223 (270)
T 3llc_A 154 IEPLLGDRERAELAENGYFEEVSEYSPEPNIFTRALMEDGRANRVMAGMID----------TGCPVHILQGMADPDVPYQ 223 (270)
T ss_dssp TGGGCCHHHHHHHHHHSEEEECCTTCSSCEEEEHHHHHHHHHTCCTTSCCC----------CCSCEEEEEETTCSSSCHH
T ss_pred hhhhhhhhhhhhhhccCcccChhhcccchhHHHHHHHhhhhhhhhhhhhhc----------CCCCEEEEecCCCCCCCHH
Confidence 100 000 00 01111 11 12233334444444444444 7889999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeCCCCCCCCCchHHHHHHHHHHHHHHHH
Q 004766 667 HSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAK 724 (732)
Q Consensus 667 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~ 724 (732)
++.++++.+. +..+++++++++||.+..... ..+....+.+||.+
T Consensus 224 ~~~~~~~~~~------------~~~~~~~~~~~~gH~~~~~~~-~~~~~~~i~~fl~~ 268 (270)
T 3llc_A 224 HALKLVEHLP------------ADDVVLTLVRDGDHRLSRPQD-IDRMRNAIRAMIEP 268 (270)
T ss_dssp HHHHHHHTSC------------SSSEEEEEETTCCSSCCSHHH-HHHHHHHHHHHHC-
T ss_pred HHHHHHHhcC------------CCCeeEEEeCCCccccccccc-HHHHHHHHHHHhcC
Confidence 8888877654 335899999999997665433 23455556666643
|
| >1vkh_A Putative serine hydrolase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.85A {Saccharomyces cerevisiae} SCOP: c.69.1.32 | Back alignment and structure |
|---|
Probab=99.78 E-value=2.2e-19 Score=182.81 Aligned_cols=207 Identities=10% Similarity=0.012 Sum_probs=139.6
Q ss_pred CCCccEEEEEcCCCCcc---CCCCcChhHHHHH----HhcCcEEEEEcccCCCCCchhHHhcccccCCccHHHHHHHHHH
Q 004766 478 DGSHPCLLYGYGGFNIS---VTPSFSVSRTILM----RHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASE 550 (732)
Q Consensus 478 ~~~~P~vv~~hG~~~~~---~~~~~~~~~~~~l----~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~ 550 (732)
.++.|+||++|||.... ....|. .+...| +++||.|+++|+|++++. .....++|+.++++
T Consensus 38 ~~~~p~vv~lHGgg~~~g~~~~~~~~-~~~~~L~~~a~~~g~~vi~~d~r~~~~~-----------~~~~~~~d~~~~~~ 105 (273)
T 1vkh_A 38 QNTREAVIYIHGGAWNDPENTPNDFN-QLANTIKSMDTESTVCQYSIEYRLSPEI-----------TNPRNLYDAVSNIT 105 (273)
T ss_dssp TTCCEEEEEECCSTTTCTTCCGGGGH-HHHHHHHHHCTTCCEEEEEECCCCTTTS-----------CTTHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCcccCCcCChHHHH-HHHHHHhhhhccCCcEEEEeecccCCCC-----------CCCcHHHHHHHHHH
Confidence 35789999999975332 122333 334555 458999999999987642 12346789999999
Q ss_pred HHHHcCCCCCCcEEEEecChhHHHHHHHHhhC-----------------CCeeeEEEEcCCcccccccccCCCCC-ccc-
Q 004766 551 YLISAGYTQSRKLCIEGGSNGGLLVGACINQR-----------------PDLFGCALAHVGVMDMLRYHKFTIGH-AWV- 611 (732)
Q Consensus 551 ~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~-----------------p~~f~a~v~~~p~~d~~~~~~~~~~~-~~~- 611 (732)
+++++ .++++++++|+|+||++++.++.++ |+.++++|+.+|+.++.......... .+.
T Consensus 106 ~l~~~--~~~~~i~l~G~S~GG~~a~~~a~~~~~~~p~~~~~~~~~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~~~~~~ 183 (273)
T 1vkh_A 106 RLVKE--KGLTNINMVGHSVGATFIWQILAALKDPQEKMSEAQLQMLGLLQIVKRVFLLDGIYSLKELLIEYPEYDCFTR 183 (273)
T ss_dssp HHHHH--HTCCCEEEEEETHHHHHHHHHHTGGGSCTTTCCHHHHHHHHHHTTEEEEEEESCCCCHHHHHHHCGGGHHHHH
T ss_pred HHHHh--CCcCcEEEEEeCHHHHHHHHHHHHhccCCccccccccccccCCcccceeeeecccccHHHhhhhcccHHHHHH
Confidence 99887 5778999999999999999999885 78999999999987764332100000 000
Q ss_pred cccCCCCCHHHHH-HHHhcCcccC-CCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhcCCCCCCCCC
Q 004766 612 SDFGCSEEEEEFY-WLIKYSPLHN-VRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQT 689 (732)
Q Consensus 612 ~~~g~p~~~~~~~-~~~~~sp~~~-~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~ 689 (732)
..++.. .+.+. .....+|+.. ... .+.+|+||+||.+|..||+.++.+++++|+.. +
T Consensus 184 ~~~~~~--~~~~~~~~~~~~~~~~~~~~---------~~~~P~lii~G~~D~~vp~~~~~~~~~~l~~~----------~ 242 (273)
T 1vkh_A 184 LAFPDG--IQMYEEEPSRVMPYVKKALS---------RFSIDMHLVHSYSDELLTLRQTNCLISCLQDY----------Q 242 (273)
T ss_dssp HHCTTC--GGGCCCCHHHHHHHHHHHHH---------HHTCEEEEEEETTCSSCCTHHHHHHHHHHHHT----------T
T ss_pred HHhccc--ccchhhcccccChhhhhccc---------ccCCCEEEEecCCcCCCChHHHHHHHHHHHhc----------C
Confidence 011111 00000 0011122110 000 15689999999999999999999999999987 8
Q ss_pred CCEEEEEeCCCCCCCCCchHHHHHHHHHHHHHH
Q 004766 690 NPIIGRIERKAGHGVGLPTQKMIDEAADRYGFM 722 (732)
Q Consensus 690 ~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl 722 (732)
.++++++++++||...... .+....+.+||
T Consensus 243 ~~~~~~~~~~~gH~~~~~~---~~~~~~i~~fl 272 (273)
T 1vkh_A 243 LSFKLYLDDLGLHNDVYKN---GKVAKYIFDNI 272 (273)
T ss_dssp CCEEEEEECCCSGGGGGGC---HHHHHHHHHTC
T ss_pred CceEEEEeCCCcccccccC---hHHHHHHHHHc
Confidence 8999999999999865433 23444555554
|
| >3d0k_A Putative poly(3-hydroxybutyrate) depolymerase LPQ; alpha-beta-alpha sandwich, structural genomics, PSI-2; 1.83A {Bordetella parapertussis 12822} | Back alignment and structure |
|---|
Probab=99.77 E-value=4.2e-18 Score=176.32 Aligned_cols=213 Identities=12% Similarity=0.057 Sum_probs=143.3
Q ss_pred EEEEEE---ccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchh
Q 004766 452 HQVFVP---SKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEE 528 (732)
Q Consensus 452 ~~~~~~---s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~ 528 (732)
..+.+. +.+| .++.++++.|++. ..+.|+||++||+.+... .|...+...+.++||+|+++|+|+.+..+..
T Consensus 25 ~~~~~~~~~~~~~-~~l~~~~~~P~~~--~~~~p~vv~lHG~~~~~~--~~~~~~~~~l~~~g~~v~~~d~~~~~~p~~~ 99 (304)
T 3d0k_A 25 NAIPYLDDDRNAD-RPFTLNTYRPYGY--TPDRPVVVVQHGVLRNGA--DYRDFWIPAADRHKLLIVAPTFSDEIWPGVE 99 (304)
T ss_dssp EEEEECC---CTT-CCEEEEEEECTTC--CTTSCEEEEECCTTCCHH--HHHHHTHHHHHHHTCEEEEEECCTTTSCHHH
T ss_pred ceEEecccCCCCC-ceEEEEEEeCCCC--CCCCcEEEEeCCCCCCHH--HHHHHHHHHHHHCCcEEEEeCCccccCCCcc
Confidence 345565 6788 8999999999864 246799999999877642 2322335666669999999999976332222
Q ss_pred HHhccc--c------cCCccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCC-eeeEEEEc-CCcccc
Q 004766 529 WHKGGA--L------AKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPD-LFGCALAH-VGVMDM 598 (732)
Q Consensus 529 ~~~~~~--~------~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~-~f~a~v~~-~p~~d~ 598 (732)
|+..+. + ......++|+.+++++|.++..+|++||+|+|+|+||++++.++.++|+ .++++|+. .|+.++
T Consensus 100 ~~~~g~~~g~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~~vl~~~~~~~~ 179 (304)
T 3d0k_A 100 SYNNGRAFTAAGNPRHVDGWTYALVARVLANIRAAEIADCEQVYLFGHSAGGQFVHRLMSSQPHAPFHAVTAANPGWYTL 179 (304)
T ss_dssp HTTTTTCBCTTSCBCCGGGSTTHHHHHHHHHHHHTTSCCCSSEEEEEETHHHHHHHHHHHHSCSTTCSEEEEESCSSCCC
T ss_pred ccccCccccccCCCCcccchHHHHHHHHHHHHHhccCCCCCcEEEEEeChHHHHHHHHHHHCCCCceEEEEEecCccccc
Confidence 322211 0 0113456889999999998877899999999999999999999999995 67777744 476654
Q ss_pred cccccCCCCCccccccCCCCCHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCC--------------
Q 004766 599 LRYHKFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVV-------------- 664 (732)
Q Consensus 599 ~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~-------------- 664 (732)
..... .| .+|.... ..+|...... ..+|+|++||.+|..+.
T Consensus 180 ~~~~~-----~~--~~~~~~~--------~~~~~~~~~~----------~~~p~li~~G~~D~~~~~p~~~~~~~~~~~~ 234 (304)
T 3d0k_A 180 PTFEH-----RF--PEGLDGV--------GLTEDHLARL----------LAYPMTILAGDQDIATDDPNLPSEPAALRQG 234 (304)
T ss_dssp SSTTS-----BT--TTSSBTT--------TCCHHHHHHH----------HHSCCEEEEETTCCCC--CCSCCSHHHHTTC
T ss_pred CCccc-----cC--ccccCCC--------CCCHHHHHhh----------hcCCEEEEEeCCCCCccccccccChhhhccC
Confidence 32210 11 1121110 0122211111 45799999999999752
Q ss_pred ---chHHHHHHHHHH----HhhcCCCCCCCCCCC--EEEEEeCCCCCCC
Q 004766 665 ---PLHSLKLLATMQ----YVLCTSLENSPQTNP--IIGRIERKAGHGV 704 (732)
Q Consensus 665 ---~~~~~~~~~~l~----~~~~~~~~~~~~~~~--~~~~~~~~~gH~~ 704 (732)
...+.++++.++ +. +.+ ++++++|++||.+
T Consensus 235 ~~~~~~~~~~~~~l~~~a~~~----------g~~~~~~~~~~pg~gH~~ 273 (304)
T 3d0k_A 235 PHRYARARHYYEAGQRAAAQR----------GLPFGWQLQVVPGIGHDG 273 (304)
T ss_dssp SSHHHHHHHHHHHHHHHHHHH----------TCCCCCEEEEETTCCSCH
T ss_pred ccHHHHHHHHHHHHHHHHHhc----------CCCcceEEEEeCCCCCch
Confidence 245667777776 45 666 8999999999987
|
| >3iii_A COCE/NOND family hydrolase; structural genomics, center for structural genomi infectious diseases, csgid; HET: MSE PLM; 1.95A {Staphylococcus aureus subsp} PDB: 3ib3_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=8.5e-18 Score=186.17 Aligned_cols=240 Identities=12% Similarity=0.071 Sum_probs=162.9
Q ss_pred eEEEEEEEccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCc---------------------ChhHHHHHH
Q 004766 450 HVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSF---------------------SVSRTILMR 508 (732)
Q Consensus 450 ~~~~~~~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~---------------------~~~~~~~l~ 508 (732)
..+.+.+++.|| ++|.+.++.|++ .++.|+||+.||.... ..+.+ ......+|+
T Consensus 40 ~~~~v~i~~~DG-~~L~a~l~~P~~---~~~~P~vl~~~pyg~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~la 114 (560)
T 3iii_A 40 MEKDGTVEMRDG-EKLYINIFRPNK---DGKFPVVMSADTYGKD-NKPKITNMGALWPTLGTIPTSSFTPEESPDPGFWV 114 (560)
T ss_dssp EEEEEEEECTTS-CEEEEEEEECSS---SSCEEEEEEEESSCTT-CCCC--CHHHHSGGGCCCCCCTTCCTTSCCHHHHG
T ss_pred EEEEEEEECCCC-cEEEEEEEecCC---CCCCCEEEEecCCCCC-cccccccccccccccccccccccccccCCCHHHHH
Confidence 557799999999 999999999986 3789999998875433 11111 001135566
Q ss_pred hcCcEEEEEcccCCCCCchhHHhcccccCCccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeE
Q 004766 509 HLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGC 588 (732)
Q Consensus 509 ~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a 588 (732)
++||+|+.+|+||.|+++..+. ..+....+|+.++++||.++.++| +||+++|+|+||+++++++.++|+.++|
T Consensus 115 ~~Gy~vv~~D~RG~G~S~G~~~-----~~~~~~~~D~~~~i~~l~~~~~~~-~~igl~G~S~GG~~al~~a~~~p~~l~a 188 (560)
T 3iii_A 115 PNDYVVVKVALRGSDKSKGVLS-----PWSKREAEDYYEVIEWAANQSWSN-GNIGTNGVSYLAVTQWWVASLNPPHLKA 188 (560)
T ss_dssp GGTCEEEEEECTTSTTCCSCBC-----TTSHHHHHHHHHHHHHHHTSTTEE-EEEEEEEETHHHHHHHHHHTTCCTTEEE
T ss_pred hCCCEEEEEcCCCCCCCCCccc-----cCChhHHHHHHHHHHHHHhCCCCC-CcEEEEccCHHHHHHHHHHhcCCCceEE
Confidence 6999999999999998876553 223467899999999999998887 8999999999999999999999999999
Q ss_pred EEEcCCcccccccccCCCCC-------cccc----ccC-CCCCHHHHH----------HHHhcCcccCCCCCCCCCCCCC
Q 004766 589 ALAHVGVMDMLRYHKFTIGH-------AWVS----DFG-CSEEEEEFY----------WLIKYSPLHNVRRPWEQNPDKP 646 (732)
Q Consensus 589 ~v~~~p~~d~~~~~~~~~~~-------~~~~----~~g-~p~~~~~~~----------~~~~~sp~~~~~~~~~~~~~~~ 646 (732)
+|+.+|+.|+.+...+..+. .|.. .|. .+...+..+ ++++.++ ++.
T Consensus 189 iv~~~~~~d~~~~~~~~gG~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~hp~~d~~W~~~~~--~~~---------- 256 (560)
T 3iii_A 189 MIPWEGLNDMYREVAFHGGIPDTGFYRFWTQGIFARWTDNPNIEDLIQAQQEHPLFDDFWKQRQV--PLS---------- 256 (560)
T ss_dssp EEEESCCCBHHHHTTEETTEECCSHHHHHHHHHHHHTTTCTTBCCHHHHHHHCCSSCHHHHTTBC--CGG----------
T ss_pred EEecCCcccccccceecCCCCchhHHHHHHhhhccccccccchHHHHHHHHHCCCcchHhhccCC--chh----------
Confidence 99999999976421111110 1110 011 010000111 2233333 233
Q ss_pred CCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeCCCCCCCCCchHHHHHHHHHHHHHHHHHh
Q 004766 647 FQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKML 726 (732)
Q Consensus 647 ~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l 726 (732)
+++.|+|+++|-.|..+....+.+.+++|+. ....+++.+ .+|... .. ..+..+..+.||+++|
T Consensus 257 ~I~vPvl~v~Gw~D~~~~~~g~l~~y~~l~~------------~~k~l~ih~-~~~~~~--~~-~~~~~~~~~~wfD~~L 320 (560)
T 3iii_A 257 QIKTPLLTCASWSTQGLHNRGSFEGFKQAAS------------EEKWLYVHG-RKEWES--YY-ARENLERQKSFFDFYL 320 (560)
T ss_dssp GCCSCEEEEEEGGGTTTTHHHHHHHHHHCCC------------SSEEEEEES-SCHHHH--HH-SHHHHHHHHHHHHHHT
T ss_pred hCCCCEEEeCCcCCCcccchhHHHHHHhccc------------cCcEEEECC-CCCcCc--cc-ChhHHHHHHHHHHHHh
Confidence 3899999999999987777778777776653 233555522 222210 01 1234567889999999
Q ss_pred CC
Q 004766 727 GA 728 (732)
Q Consensus 727 ~~ 728 (732)
+.
T Consensus 321 kG 322 (560)
T 3iii_A 321 KE 322 (560)
T ss_dssp SC
T ss_pred CC
Confidence 64
|
| >2qm0_A BES; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: SVY; 1.84A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=99.77 E-value=8e-19 Score=178.76 Aligned_cols=231 Identities=13% Similarity=0.061 Sum_probs=152.2
Q ss_pred eEEEEEEEcc-CCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcC---cEEEEEcccCCCCC
Q 004766 450 HVHQVFVPSK-DGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLG---AVFCIANIRGGGEY 525 (732)
Q Consensus 450 ~~~~~~~~s~-dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G---~~v~~~~~rG~g~~ 525 (732)
..+.+.+.|. +| .++.++++.|+++..++++|+|+++||+........+......+.++.| ++|+.+++|+++.+
T Consensus 17 ~~~~~~~~s~~~g-~~~~~~v~~P~~~~~~~~~Pvl~~lhG~~~~~~~~~~~~~~~~~~~~~g~~~~ivV~i~~~~~~~~ 95 (275)
T 2qm0_A 17 NTEQWKMYSKLEG-KEYQIHISKPKQPAPDSGYPVIYVLDGNAFFQTFHEAVKIQSVRAEKTGVSPAIIVGVGYPIEGAF 95 (275)
T ss_dssp TEEEEEEECTTTC-CEEEEEEECCSSCCCTTCEEEEEEESHHHHHHHHHHHHHHHGGGHHHHCCCCCEEEEEECSCSSSC
T ss_pred CceEEEEEecCCC-CEEEEEEECCCCCCCCCCccEEEEecChHHHHHHHHHHHHHhhcchhcCCCCeEEEEECCCCCCcC
Confidence 5677888886 78 8999999999998666789999999998532110011100111234467 99999999987655
Q ss_pred chh-H-Hhccc-----------------ccCCccHHHHHH--HHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCC
Q 004766 526 GEE-W-HKGGA-----------------LAKKQNCFDDFI--SASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPD 584 (732)
Q Consensus 526 g~~-~-~~~~~-----------------~~~~~~~~~D~~--~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~ 584 (732)
+.. + ..... ...+...+.|++ +.+.++.++-.+|++|++|+|+|+||++++.++.++|+
T Consensus 96 ~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~l~~~i~~~~~~~~~~~~~~G~S~GG~~a~~~~~~~p~ 175 (275)
T 2qm0_A 96 SGEERCYDFTPSVISKDAPLKPDGKPWPKTGGAHNFFTFIEEELKPQIEKNFEIDKGKQTLFGHXLGGLFALHILFTNLN 175 (275)
T ss_dssp CHHHHHHHHCSSCCCC---------CCCCCCCHHHHHHHHHHTHHHHHHHHSCEEEEEEEEEEETHHHHHHHHHHHHCGG
T ss_pred cccccccccCCCCccccCCccccCCcCCCCCChHHHHHHHHHHHHHHHHhhccCCCCCCEEEEecchhHHHHHHHHhCch
Confidence 321 1 01100 001112455554 34555555545788999999999999999999999999
Q ss_pred eeeEEEEcCCcccccccccCCCCCccccccCCCCCHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCC
Q 004766 585 LFGCALAHVGVMDMLRYHKFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVV 664 (732)
Q Consensus 585 ~f~a~v~~~p~~d~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~ 664 (732)
+|+++++.+|.+.+..... . ...+.+ +...+ .. ...+|++|.||..|..++
T Consensus 176 ~f~~~~~~s~~~~~~~~~~--------~-----~~~~~~--~~~~~----~~----------~~~~~~~l~~G~~D~~~~ 226 (275)
T 2qm0_A 176 AFQNYFISSPSIWWNNKSV--------L-----EKEENL--IIELN----NA----------KFETGVFLTVGSLEREHM 226 (275)
T ss_dssp GCSEEEEESCCTTHHHHGG--------G-----GGTTHH--HHHHH----TC----------SSCEEEEEEEETTSCHHH
T ss_pred hhceeEEeCceeeeChHHH--------H-----HHHHHH--Hhhhc----cc----------CCCceEEEEeCCcccchh
Confidence 9999999999864321100 0 000111 11111 11 156899999999999999
Q ss_pred chHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeCCCCCCCCCchHHHHHHHHHHHHHH
Q 004766 665 PLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFM 722 (732)
Q Consensus 665 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl 722 (732)
+.++.+++++|++. ...|.++.+.++++++|+... ...+...+.||
T Consensus 227 ~~~~~~~~~~L~~~-------~~~g~~~~~~~~~g~~H~~~~-----~~~l~~~l~~l 272 (275)
T 2qm0_A 227 VVGANELSERLLQV-------NHDKLKFKFYEAEGENHASVV-----PTSLSKGLRFI 272 (275)
T ss_dssp HHHHHHHHHHHHHC-------CCTTEEEEEEEETTCCTTTHH-----HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhc-------ccCCceEEEEECCCCCccccH-----HHHHHHHHHHH
Confidence 99999999999532 112889999999999997531 22334455665
|
| >1ufo_A Hypothetical protein TT1662; alpha-beta fold, hydrolase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.60A {Thermus thermophilus} SCOP: c.69.1.27 | Back alignment and structure |
|---|
Probab=99.77 E-value=7.7e-18 Score=166.79 Aligned_cols=220 Identities=14% Similarity=-0.001 Sum_probs=153.0
Q ss_pred EEccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcc--
Q 004766 456 VPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGG-- 533 (732)
Q Consensus 456 ~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~-- 533 (732)
+...+| . ++.++.|.+ +.|+||++||..+... .|.. +...|+++||.|+++|+||.|.....+....
T Consensus 7 ~~~~~g-~--~~~~~~~~~-----~~~~vv~~hG~~~~~~--~~~~-~~~~l~~~G~~v~~~d~~g~g~s~~~~~~~~~~ 75 (238)
T 1ufo_A 7 RLTLAG-L--SVLARIPEA-----PKALLLALHGLQGSKE--HILA-LLPGYAERGFLLLAFDAPRHGEREGPPPSSKSP 75 (238)
T ss_dssp EEEETT-E--EEEEEEESS-----CCEEEEEECCTTCCHH--HHHH-TSTTTGGGTEEEEECCCTTSTTSSCCCCCTTST
T ss_pred ccccCC-E--EEEEEecCC-----CccEEEEECCCcccch--HHHH-HHHHHHhCCCEEEEecCCCCccCCCCCCccccc
Confidence 334466 4 455566653 6799999999876532 2222 2344555899999999999876433211100
Q ss_pred -----cccCCccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCcccccccccCCCCC
Q 004766 534 -----ALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGH 608 (732)
Q Consensus 534 -----~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~ 608 (732)
....-....+|+.++++++.+.+. ++++++|+|+||.+++.++.++|+.++++++..|..... ...
T Consensus 76 ~~~~~~~~~~~~~~~d~~~~~~~l~~~~~---~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~~~~~~~~~~-~~~----- 146 (238)
T 1ufo_A 76 RYVEEVYRVALGFKEEARRVAEEAERRFG---LPLFLAGGSLGAFVAHLLLAEGFRPRGVLAFIGSGFPMK-LPQ----- 146 (238)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCEEEEEETHHHHHHHHHHHTTCCCSCEEEESCCSSCCC-CCT-----
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHhccC---CcEEEEEEChHHHHHHHHHHhccCcceEEEEecCCccch-hhh-----
Confidence 000012346788889999887654 799999999999999999999999998888776643211 000
Q ss_pred ccccccCCCCCHHHHHHHHhcCcccCCCCCCCCCCCCCCC-CCeEEEEeeCCCCCCCchHHHHHHHHHH-HhhcCCCCCC
Q 004766 609 AWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQ-YPSTLLLTADHDDRVVPLHSLKLLATMQ-YVLCTSLENS 686 (732)
Q Consensus 609 ~~~~~~g~p~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~-~~p~Li~~g~~D~~v~~~~~~~~~~~l~-~~~~~~~~~~ 686 (732)
..+..|. ....+..+++...+.. + .+|+|+++|.+|..||+.++.++++++. ..
T Consensus 147 ---~~~~~~~---~~~~~~~~~~~~~~~~----------~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~-------- 202 (238)
T 1ufo_A 147 ---GQVVEDP---GVLALYQAPPATRGEA----------YGGVPLLHLHGSRDHIVPLARMEKTLEALRPHY-------- 202 (238)
T ss_dssp ---TCCCCCH---HHHHHHHSCGGGCGGG----------GTTCCEEEEEETTCTTTTHHHHHHHHHHHGGGC--------
T ss_pred ---hhccCCc---ccchhhcCChhhhhhh----------ccCCcEEEEECCCCCccCcHHHHHHHHHHhhcC--------
Confidence 0112221 2445667777777665 4 7899999999999999999999999998 65
Q ss_pred CCCC-CEEEEEeCCCCCCCCCchHHHHHHHHHHHHHHHHHhC
Q 004766 687 PQTN-PIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLG 727 (732)
Q Consensus 687 ~~~~-~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 727 (732)
+. ++++++++++||.+.. +....+.+||.++|+
T Consensus 203 --~~~~~~~~~~~~~~H~~~~------~~~~~~~~~l~~~l~ 236 (238)
T 1ufo_A 203 --PEGRLARFVEEGAGHTLTP------LMARVGLAFLEHWLE 236 (238)
T ss_dssp --TTCCEEEEEETTCCSSCCH------HHHHHHHHHHHHHHH
T ss_pred --CCCceEEEEeCCCCcccHH------HHHHHHHHHHHHHHh
Confidence 65 7899999999998753 234467788888764
|
| >3pe6_A Monoglyceride lipase; alpha-beta hydrolase fold, 2-arachidonyl-glycerol, M associated, hydrolase, hydrolase-hydrolase inhibitor comple; HET: ZYH; 1.35A {Homo sapiens} PDB: 3jw8_A 3jwe_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=4.1e-17 Score=167.48 Aligned_cols=237 Identities=12% Similarity=0.041 Sum_probs=160.3
Q ss_pred EEEccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhccc
Q 004766 455 FVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGA 534 (732)
Q Consensus 455 ~~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~ 534 (732)
.+.+.|| .+|.+.++.|++ ++.|+||++||..+... .|.. +...|.++||.|+++|+||.|....... .
T Consensus 21 ~~~~~~g-~~l~~~~~~~~~----~~~~~vv~~hG~~~~~~--~~~~-~~~~l~~~g~~v~~~d~~G~G~s~~~~~---~ 89 (303)
T 3pe6_A 21 HLVNADG-QYLFCRYWAPTG----TPKALIFVSHGAGEHSG--RYEE-LARMLMGLDLLVFAHDHVGHGQSEGERM---V 89 (303)
T ss_dssp EEECTTS-CEEEEEEECCSS----CCSEEEEEECCTTCCGG--GGHH-HHHHHHHTTEEEEEECCTTSTTSCSSTT---C
T ss_pred eEecCCC-eEEEEEEeccCC----CCCeEEEEECCCCchhh--HHHH-HHHHHHhCCCcEEEeCCCCCCCCCCCCC---C
Confidence 5677899 999999988764 46799999999876543 3443 4455665899999999999886542210 1
Q ss_pred ccCCccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCcccccccc------------
Q 004766 535 LAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYH------------ 602 (732)
Q Consensus 535 ~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~------------ 602 (732)
...-....+|+.++++++..+ .+.+++.++|+|+||++++.++.++|++++++|+..|........
T Consensus 90 ~~~~~~~~~d~~~~l~~l~~~--~~~~~~~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~ 167 (303)
T 3pe6_A 90 VSDFHVFVRDVLQHVDSMQKD--YPGLPVFLLGHSMGGAIAILTAAERPGHFAGMVLISPLVLANPESATTFKVLAAKVL 167 (303)
T ss_dssp CSSTHHHHHHHHHHHHHHHHH--STTCCEEEEEETHHHHHHHHHHHHSTTTCSEEEEESCSSSBCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhhc--cCCceEEEEEeCHHHHHHHHHHHhCcccccEEEEECccccCchhccHHHHHHHHHHH
Confidence 112233478889999998876 345699999999999999999999999999999999976542110
Q ss_pred ----cCCCCCccccccCCCCCHHHHHHHHhcCcc----------------------cCCCCCCCCCCCCCCCCCeEEEEe
Q 004766 603 ----KFTIGHAWVSDFGCSEEEEEFYWLIKYSPL----------------------HNVRRPWEQNPDKPFQYPSTLLLT 656 (732)
Q Consensus 603 ----~~~~~~~~~~~~g~p~~~~~~~~~~~~sp~----------------------~~~~~~~~~~~~~~~~~~p~Li~~ 656 (732)
...........+. ..+......+.. .+. ..+. .+..|+|+++
T Consensus 168 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~i~~P~l~i~ 235 (303)
T 3pe6_A 168 NSVLPNLSSGPIDSSVL-SRNKTEVDIYNS-DPLICRAGLKVCFGIQLLNAVSRVERALP----------KLTVPFLLLQ 235 (303)
T ss_dssp HTTCCSCCCCCCCGGGT-CSCHHHHHHHHT-CTTSCCSCCCHHHHHHHHHHHHHHHHHGG----------GCCSCEEEEE
T ss_pred HHhcccccCCccchhhh-hcchhHHHHhcc-CccccccchhhhhHHHHHHHHHHHHHHhh----------cCCCCEEEEe
Confidence 0000000000010 011222211111 111 1122 2688999999
Q ss_pred eCCCCCCCchHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeCCCCCCCCCch-HHHHHHHHHHHHHHHHHhCC
Q 004766 657 ADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPT-QKMIDEAADRYGFMAKMLGA 728 (732)
Q Consensus 657 g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~-~~~~~~~~~~~~fl~~~l~~ 728 (732)
|.+|..|++..+.++++.+. +..+.+++++++||...... ....+....+++||.+++..
T Consensus 236 g~~D~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~gH~~~~~~p~~~~~~~~~~~~~l~~~~~~ 296 (303)
T 3pe6_A 236 GSADRLCDSKGAYLLMELAK------------SQDKTLKIYEGAYHVLHKELPEVTNSVFHEINMWVSQRTAT 296 (303)
T ss_dssp ETTCSSBCHHHHHHHHHHCC------------CSSEEEEEETTCCSCGGGSCHHHHHHHHHHHHHHHHHTTC-
T ss_pred eCCCCCCChHHHHHHHHhcc------------cCCceEEEeCCCccceeccchHHHHHHHHHHHHHHhccCCC
Confidence 99999999998888877664 23578999999999976432 22346667789999988753
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.1e-16 Score=169.21 Aligned_cols=260 Identities=13% Similarity=0.084 Sum_probs=168.2
Q ss_pred eEEECCCCcEEEEEEeccCCceEEEEEEECCCCceeccccccee-eeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccC
Q 004766 136 KVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWFK-FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDS 214 (732)
Q Consensus 136 ~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~~~~~-~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~ 214 (732)
.++|||||++|||+.+.+|. .+||++|+++|+....+..... ...++|||||+.|+|+..+
T Consensus 40 ~~~~SpDg~~l~~~~~~~g~--~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~---------------- 101 (388)
T 3pe7_A 40 QKCFTRDGSKLLFGGAFDGP--WNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDG---------------- 101 (388)
T ss_dssp SCCBCTTSCEEEEEECTTSS--CEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETT----------------
T ss_pred CccCCCCCCEEEEEEcCCCC--ceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCC----------------
Confidence 37899999999999876554 5899999999986554432221 1367999999999998632
Q ss_pred CcccEEEEEECCCCCCCCeEEEecCCCCeeEE--EeEEecCCcEEEEEEecC-----------------CcceEEEEEEe
Q 004766 215 NLYHEFYYHFLGTKQSEDILCWKDPEHPKYIF--SGHVTEDGQYLVMCIEEN-----------------CDPVNKVYYCD 275 (732)
Q Consensus 215 ~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~--~~~~SpDg~~l~~~~~~~-----------------~~~~~~l~~~d 275 (732)
..|+++++.++... .++..+. .+.. ....+|||+.++...... ......|+++|
T Consensus 102 ---~~l~~~d~~~g~~~--~~~~~~~--~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d 174 (388)
T 3pe7_A 102 ---RNLMRVDLATLEEN--VVYQVPA--EWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVD 174 (388)
T ss_dssp ---TEEEEEETTTCCEE--EEEECCT--TEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEE
T ss_pred ---CeEEEEECCCCcce--eeeechh--hcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEE
Confidence 36999999886533 4555443 2322 234599999987654221 11247899999
Q ss_pred CCCCCCCcccccccCCCCCcEEeeeccc-ceEEEEEe-cCCeEEEEeCCCC--CCceEEEEeCCCCCCceEeccCCCCCc
Q 004766 276 LSALPEGLEGFKKRDGLLPFVKLIDGFD-AQYEVIAN-DDTVFTFLTNKDA--PKYKIIRVDLKEPNDWFEVIPEAERDV 351 (732)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~s~-dg~~l~~~s~~~~--~~~~l~~~d~~~~~~~~~l~~~~~~~~ 351 (732)
+++++ .+.+..... .....|+| ||+.|+|.++... ...+|+.+|++++. .+.+..+.....
T Consensus 175 ~~~g~--------------~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~-~~~l~~~~~~~~ 239 (388)
T 3pe7_A 175 LKTGE--------------STVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTN-MRKVKTHAEGES 239 (388)
T ss_dssp TTTCC--------------EEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCC-CEESCCCCTTEE
T ss_pred CCCCc--------------eEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCc-eEEeeeCCCCcc
Confidence 98753 334443222 22346999 9999998886421 25589999988765 455655442234
Q ss_pred eeEEEEecCC-EEEEEEecCCee--EEEEEeCCCCceeeecccccce------eeEeecccCCcEEEEEEec-----CCC
Q 004766 352 LESATAVNLN-QMIVSYLSDVKY--VLQIRDLKNGSLLHQLPIEIGS------VNAISARREDSVVFISFTS-----FLI 417 (732)
Q Consensus 352 l~~~~~~~~~-~l~~~~~~~g~~--~l~~~d~~~g~~~~~l~~~~g~------v~~~~~s~d~~~l~~~~ss-----~~~ 417 (732)
+..+.|++++ .|++....++.. .|+++|+++|+. +.+....+. .....++|||+.++++.+. ...
T Consensus 240 ~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~-~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~ 318 (388)
T 3pe7_A 240 CTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLEN-RQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIEN 318 (388)
T ss_dssp EEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCE-EEEEEECCEEEEEECTTSSEEEEEECCC------------CC
T ss_pred cccceECCCCCEEEEEecCCCCCcceEEEEecCCCce-EEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCC
Confidence 6678898864 476666665544 499999998875 444321111 1123467899888776532 245
Q ss_pred CceEEEEECCCCCCceEEEEe
Q 004766 418 PGIVYQCNLKTETPEMKIFRE 438 (732)
Q Consensus 418 p~~~y~~d~~~~~~~~~~l~~ 438 (732)
...+|++|+.+++ .+.+..
T Consensus 319 ~~~i~~~d~~~~~--~~~l~~ 337 (388)
T 3pe7_A 319 DPFLYVFNMKNGT--QHRVAR 337 (388)
T ss_dssp CCEEEEEETTTTE--EEEEEE
T ss_pred CCEEEEEeccCCc--eEEecc
Confidence 6789999999884 555554
|
| >1dqz_A 85C, protein (antigen 85-C); fibronectin, structural genomics, PSI, protein structure initiative, TB structural genomics consortium; 1.50A {Mycobacterium tuberculosis} SCOP: c.69.1.3 PDB: 3hrh_A 1dqy_A 1va5_A* 1f0n_A* 1f0p_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=6.6e-18 Score=172.55 Aligned_cols=244 Identities=11% Similarity=0.024 Sum_probs=158.2
Q ss_pred eEEEEEEEcc-CCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcCh--hHHHHHHhcCcEEEEEcccCCCCCc
Q 004766 450 HVHQVFVPSK-DGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSV--SRTILMRHLGAVFCIANIRGGGEYG 526 (732)
Q Consensus 450 ~~~~~~~~s~-dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~--~~~~~l~~~G~~v~~~~~rG~g~~g 526 (732)
.++.+.+.|. .| .++++++ |++. + |+||++||..+......|.. ....++.++|++|+++|.+|++.|.
T Consensus 5 ~~~~~~~~s~~~~-~~~~v~~--~p~~---~--~~v~llHG~~~~~~~~~w~~~~~~~~~l~~~~~~vv~pd~~~~~~~~ 76 (280)
T 1dqz_A 5 PVEYLQVPSASMG-RDIKVQF--QGGG---P--HAVYLLDGLRAQDDYNGWDINTPAFEEYYQSGLSVIMPVGGQSSFYT 76 (280)
T ss_dssp CEEEEEEEETTTT-EEEEEEE--ECCS---S--SEEEECCCTTCCSSSCHHHHHSCHHHHHTTSSSEEEEECCCTTCTTS
T ss_pred eEEEEEEECcccC-ceeEEEE--cCCC---C--CEEEEECCCCCCCCcccccccCcHHHHHhcCCeEEEEECCCCCcccc
Confidence 3455666654 56 7777763 3332 1 58999999853111223322 1234566689999999988655442
Q ss_pred hhHHhcccc--cCCccHHHHHH--HHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCcccccccc
Q 004766 527 EEWHKGGAL--AKKQNCFDDFI--SASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYH 602 (732)
Q Consensus 527 ~~~~~~~~~--~~~~~~~~D~~--~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~ 602 (732)
. |...... ......+++++ +++.++.++--+++++++|+|+||||++++.++.++|++|+++|+.+|.+++....
T Consensus 77 ~-~~~~~~~~g~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~l~G~S~GG~~al~~a~~~p~~~~~~v~~sg~~~~~~~~ 155 (280)
T 1dqz_A 77 D-WYQPSQSNGQNYTYKWETFLTREMPAWLQANKGVSPTGNAAVGLSMSGGSALILAAYYPQQFPYAASLSGFLNPSESW 155 (280)
T ss_dssp B-CSSSCTTTTCCSCCBHHHHHHTHHHHHHHHHHCCCSSSCEEEEETHHHHHHHHHHHHCTTTCSEEEEESCCCCTTSTT
T ss_pred C-CCCCCccccccccccHHHHHHHHHHHHHHHHcCCCCCceEEEEECHHHHHHHHHHHhCCchheEEEEecCcccccCcc
Confidence 1 1111000 00123444543 34444444223577899999999999999999999999999999999988754310
Q ss_pred -----c----CCCCCccccccCCCCCHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCC------------
Q 004766 603 -----K----FTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDD------------ 661 (732)
Q Consensus 603 -----~----~~~~~~~~~~~g~p~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~------------ 661 (732)
. ......+...||+|..+ .+.+.+|..++.+.. ...+|++|.||..|.
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~g~~~~~----~~~~~~p~~~~~~l~-------~~~~~~~l~~G~~D~~~~~~~~~~~~~ 224 (280)
T 1dqz_A 156 WPTLIGLAMNDSGGYNANSMWGPSSDP----AWKRNDPMVQIPRLV-------ANNTRIWVYCGNGTPSDLGGDNIPAKF 224 (280)
T ss_dssp HHHHHHHHHHHTTSCCHHHHHCSTTSH----HHHHTCTTTTHHHHH-------HHTCEEEEECCCSCCCTTCCCSHHHHH
T ss_pred hhhhHHHHhhhccCcCHHHhcCCCCch----hhhhcCHHHHHHHHH-------hcCCeEEEEeCCCCcccccccccchhh
Confidence 0 00011122346666433 245668876654300 024799999999997
Q ss_pred --CCCchHHHHHHHHHHHhhcCCCCCCCCC-CCEEEEEeCCCCCCCCCchHHHHHHHHHHHHHHHHHhC
Q 004766 662 --RVVPLHSLKLLATMQYVLCTSLENSPQT-NPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLG 727 (732)
Q Consensus 662 --~v~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 727 (732)
.+++.++++++++|+++ | .++.+.++++++|.... +...+...+.||.+.||
T Consensus 225 ~e~~~~~~~~~~~~~L~~~----------g~~~~~~~~~~~g~H~~~~----w~~~l~~~l~~l~~~l~ 279 (280)
T 1dqz_A 225 LEGLTLRTNQTFRDTYAAD----------GGRNGVFNFPPNGTHSWPY----WNEQLVAMKADIQHVLN 279 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHT----------TCCSEEEECCSCCCSSHHH----HHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhC----------CCCceEEEecCCCccChHH----HHHHHHHHHHHHHHHhC
Confidence 57889999999999988 8 99999999999997522 34556678889988876
|
| >1fj2_A Protein (acyl protein thioesterase 1); alpha/beta hydrolase, serine hydrolase, SAD, anomalous diffr hydrolase; 1.50A {Homo sapiens} SCOP: c.69.1.14 | Back alignment and structure |
|---|
Probab=99.75 E-value=2.1e-17 Score=163.34 Aligned_cols=201 Identities=12% Similarity=0.057 Sum_probs=138.6
Q ss_pred EEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCc------hhHHh-cc---cccCC
Q 004766 469 IVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYG------EEWHK-GG---ALAKK 538 (732)
Q Consensus 469 ~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g------~~~~~-~~---~~~~~ 538 (732)
++.|+. .++.|+||++||..+... .|. .+...|.++||.|+++|.+|.+... ..|++ .+ .....
T Consensus 14 ~~~p~~---~~~~~~vv~lHG~~~~~~--~~~-~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~w~d~~g~~~~~~~~ 87 (232)
T 1fj2_A 14 AIVPAA---RKATAAVIFLHGLGDTGH--GWA-EAFAGIRSSHIKYICPHAPVRPVTLNMNVAMPSWFDIIGLSPDSQED 87 (232)
T ss_dssp EEECCS---SCCSEEEEEECCSSSCHH--HHH-HHHHTTCCTTEEEEECCCCEEEEGGGTTEEEECSSCBCCCSTTCCBC
T ss_pred cccCCC---CCCCceEEEEecCCCccc--hHH-HHHHHHhcCCcEEEecCCCccccccccccccccccccccCCcccccc
Confidence 556654 357899999999876532 232 2345556579999999555411100 00100 00 00011
Q ss_pred cc----HHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCcccccccccCCCCCcccccc
Q 004766 539 QN----CFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHAWVSDF 614 (732)
Q Consensus 539 ~~----~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~~~~~~~ 614 (732)
.. ..+|+.++++++.+ ..+|+++++++|+|+||.+++.++.++|++++++|+.+|..+......
T Consensus 88 ~~~~~~~~~~~~~~i~~~~~-~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~v~~~i~~~~~~~~~~~~~----------- 155 (232)
T 1fj2_A 88 ESGIKQAAENIKALIDQEVK-NGIPSNRIILGGFSQGGALSLYTALTTQQKLAGVTALSCWLPLRASFP----------- 155 (232)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-TTCCGGGEEEEEETHHHHHHHHHHTTCSSCCSEEEEESCCCTTGGGSC-----------
T ss_pred cHHHHHHHHHHHHHHHHHhc-CCCCcCCEEEEEECHHHHHHHHHHHhCCCceeEEEEeecCCCCCcccc-----------
Confidence 12 24556666666665 346789999999999999999999999999999999999765432110
Q ss_pred CCCCCHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhcCCCCCCCCCCC--E
Q 004766 615 GCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNP--I 692 (732)
Q Consensus 615 g~p~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~ 692 (732)
. ...... .+.+|+|+++|.+|..|++.++.+++++|++. +.+ +
T Consensus 156 ---~------------~~~~~~----------~~~~P~l~i~G~~D~~~~~~~~~~~~~~l~~~----------~~~~~~ 200 (232)
T 1fj2_A 156 ---Q------------GPIGGA----------NRDISILQCHGDCDPLVPLMFGSLTVEKLKTL----------VNPANV 200 (232)
T ss_dssp ---S------------SCCCST----------TTTCCEEEEEETTCSSSCHHHHHHHHHHHHHH----------SCGGGE
T ss_pred ---c------------cccccc----------cCCCCEEEEecCCCccCCHHHHHHHHHHHHHh----------CCCCce
Confidence 0 001122 26789999999999999999999999999987 644 9
Q ss_pred EEEEeCCCCCCCCCchHHHHHHHHHHHHHHHHHhCC
Q 004766 693 IGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLGA 728 (732)
Q Consensus 693 ~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~ 728 (732)
++++++++||.+. .+....+.+||.++|..
T Consensus 201 ~~~~~~~~~H~~~------~~~~~~i~~~l~~~l~~ 230 (232)
T 1fj2_A 201 TFKTYEGMMHSSC------QQEMMDVKQFIDKLLPP 230 (232)
T ss_dssp EEEEETTCCSSCC------HHHHHHHHHHHHHHSCC
T ss_pred EEEEeCCCCcccC------HHHHHHHHHHHHHhcCC
Confidence 9999999999983 23346789999998864
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.75 E-value=5.9e-16 Score=180.89 Aligned_cols=301 Identities=13% Similarity=0.068 Sum_probs=194.5
Q ss_pred CCCCcEE--eCCEEEEEEE-cCCCCeeEEEEEeCCCCCceEEeCCCCcCCC------------------CCEEEEeEEEC
Q 004766 82 RYDAPFK--RGNKYFYFHN-TGLQPQSVLYVQDSLDAKAKVLLDPNTLSDD------------------GTAALIKVSVS 140 (732)
Q Consensus 82 ~~~~p~~--~g~~~~~~~~-~~~~~~~~l~~r~~~~~~~~~l~D~~~l~~~------------------~~~~~~~~~~S 140 (732)
.+..+.+ +|.+++|... +++.....||+.+..+++.+.+++.....++ +...+..++||
T Consensus 38 ~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~S 117 (741)
T 2ecf_A 38 TLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWS 117 (741)
T ss_dssp CCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEEC
T ss_pred CCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEEC
Confidence 3444444 6777888776 5444456788888766776677765332210 00235688999
Q ss_pred CCCcEEEEEEeccCCceEEEEEEECCCC---ceecccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCCcc
Q 004766 141 EDAKYLAYALSYSGSDWATIKLMRIEDQ---IVEADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLY 217 (732)
Q Consensus 141 PDG~~la~~~~~~G~e~~~i~v~dl~~g---~~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~~~ 217 (732)
|||++|+|+.. .+|++||+.++ +.............++|||||+.|+|++.
T Consensus 118 pDg~~l~~~~~------~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~-------------------- 171 (741)
T 2ecf_A 118 PDAQRLLFPLG------GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRG-------------------- 171 (741)
T ss_dssp TTSSEEEEEET------TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEET--------------------
T ss_pred CCCCEEEEEeC------CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeC--------------------
Confidence 99999999974 48999999998 64433322223478999999999999852
Q ss_pred cEEEEEECCCCCCCCeEEEecCCCCe--------------eEEEeEEecCCcEEEEEEecCCc-----------------
Q 004766 218 HEFYYHFLGTKQSEDILCWKDPEHPK--------------YIFSGHVTEDGQYLVMCIEENCD----------------- 266 (732)
Q Consensus 218 ~~v~~~~lgt~~~~~~~v~~~~~~~~--------------~~~~~~~SpDg~~l~~~~~~~~~----------------- 266 (732)
..|+++++.++... .+........ ....++|||||++|++...+...
T Consensus 172 ~~i~~~d~~~g~~~--~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~ 249 (741)
T 2ecf_A 172 RNLWVIDLASGRQM--QLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVI 249 (741)
T ss_dssp TEEEEEETTTTEEE--ECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEE
T ss_pred CcEEEEecCCCCEE--EeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccce
Confidence 26999998765321 1211111100 02468999999999998765321
Q ss_pred -----------ceEEEEEEeCCC-CCCCcccccccCCCCCcEEeeec--cc--ceEEEEEecCCeEEEEeC-CCCCCceE
Q 004766 267 -----------PVNKVYYCDLSA-LPEGLEGFKKRDGLLPFVKLIDG--FD--AQYEVIANDDTVFTFLTN-KDAPKYKI 329 (732)
Q Consensus 267 -----------~~~~l~~~d~~~-~~~~~~~~~~~~~~~~~~~l~~~--~~--~~~~~~s~dg~~l~~~s~-~~~~~~~l 329 (732)
....|+++|+.+ +. ...+... .. .....| |||+.|++.+. +......|
T Consensus 250 ~~~~~~~g~~~~~~~l~~~d~~~~~~--------------~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i 314 (741)
T 2ecf_A 250 EQRYPAAGDANVQVKLGVISPAEQAQ--------------TQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDL 314 (741)
T ss_dssp EEECCBTTSCCCEEEEEEECSSTTCC--------------CEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEE
T ss_pred EeecCCCCCCCCeeEEEEEECCCCCc--------------eEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEE
Confidence 134799999877 53 1222211 11 112358 99999998764 44456789
Q ss_pred EEEeCCCCCCceEeccCCCCC---ceeEEEEecCCEEEEEEecCCeeEEEEEeCCCCceeeecccccceeeEe-ecccCC
Q 004766 330 IRVDLKEPNDWFEVIPEAERD---VLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAI-SARRED 405 (732)
Q Consensus 330 ~~~d~~~~~~~~~l~~~~~~~---~l~~~~~~~~~~l~~~~~~~g~~~l~~~d~~~g~~~~~l~~~~g~v~~~-~~s~d~ 405 (732)
+++|++++. ...++...... .+..+.|++++.+++....++..+|+.++++ |+ .+.++.....+..+ .+++|+
T Consensus 315 ~~~d~~~g~-~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~-~~-~~~l~~~~~~v~~~~~~s~dg 391 (741)
T 2ecf_A 315 VEVTLASNQ-QRVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSK-GK-AAALTHGNWSVDELLAVDEKA 391 (741)
T ss_dssp EEEETTTCC-EEEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSS-SC-EEESCCSSSCEEEEEEEETTT
T ss_pred EEEECCCCc-eEEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCC-CC-eeeeeecceEEEeEeEEeCCC
Confidence 999999887 44444432222 3356788887778888888888899999986 54 57777555555555 588999
Q ss_pred cEEEEEEecCCC--CceEEEEECCCC
Q 004766 406 SVVFISFTSFLI--PGIVYQCNLKTE 429 (732)
Q Consensus 406 ~~l~~~~ss~~~--p~~~y~~d~~~~ 429 (732)
+.++++.+. .. ...+|.++..++
T Consensus 392 ~~l~~~~~~-~~~~~~~l~~~~~~g~ 416 (741)
T 2ecf_A 392 GLAYFRAGI-ESARESQIYAVPLQGG 416 (741)
T ss_dssp TEEEEEECS-SCTTCBEEEEEETTCC
T ss_pred CEEEEEEeC-CCCceEEEEEEEcCCC
Confidence 988766543 33 345777776444
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.75 E-value=5e-16 Score=181.25 Aligned_cols=303 Identities=10% Similarity=0.048 Sum_probs=184.7
Q ss_pred CcEE-eCCEEEEEEEcCCCCeeEEEEEeCCCCCceEEeCCCCcCCCCCEEEEeEEECCCCcEEEEEEeccC----CceEE
Q 004766 85 APFK-RGNKYFYFHNTGLQPQSVLYVQDSLDAKAKVLLDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSG----SDWAT 159 (732)
Q Consensus 85 ~p~~-~g~~~~~~~~~~~~~~~~l~~r~~~~~~~~~l~D~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G----~e~~~ 159 (732)
.+.+ .++.+++.. + . .|++-+..+++.++++....+..- .....+++|||||++|||..+... +....
T Consensus 21 ~~~w~~dg~~~~~~-~---~--~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~ 93 (740)
T 4a5s_A 21 SLRWISDHEYLYKQ-E---N--NILVFNAEYGNSSVFLENSTFDEF-GHSINDYSISPDGQFILLEYNYVKQWRHSYTAS 93 (740)
T ss_dssp CEEECSSSEEEEEE-T---T--EEEEEETTTCCEEEEECTTTTTTC-CSCCCEEEECTTSSEEEEEEEEEECSSSCEEEE
T ss_pred ccEECCCCcEEEEc-C---C--cEEEEECCCCceEEEEechhhhhh-cccccceEECCCCCEEEEEECCeeeEEEccceE
Confidence 4444 344555553 2 2 356556556666777766443211 111235899999999999986321 22368
Q ss_pred EEEEECCCCceecccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCCcccEEEEEECCCCCCCCeEEEecC
Q 004766 160 IKLMRIEDQIVEADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDP 239 (732)
Q Consensus 160 i~v~dl~~g~~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~ 239 (732)
++++|+++|+..+.+........++|||||+.|+|++. ..||++++.++... .+....
T Consensus 94 ~~~~d~~~~~~~~l~~~~~~~~~~~~SPdG~~la~~~~--------------------~~i~~~~~~~~~~~--~lt~~g 151 (740)
T 4a5s_A 94 YDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYVWN--------------------NDIYVKIEPNLPSY--RITWTG 151 (740)
T ss_dssp EEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEEET--------------------TEEEEESSTTSCCE--ECCSCC
T ss_pred EEEEECCCCcEEEcccCCCcceeeEECCCCCEEEEEEC--------------------CeEEEEECCCCceE--EEcCCC
Confidence 99999999986554332223478999999999999852 25888888765432 111111
Q ss_pred CCC----------------eeEEEeEEecCCcEEEEEEecCC-------------------------------cceEEEE
Q 004766 240 EHP----------------KYIFSGHVTEDGQYLVMCIEENC-------------------------------DPVNKVY 272 (732)
Q Consensus 240 ~~~----------------~~~~~~~~SpDg~~l~~~~~~~~-------------------------------~~~~~l~ 272 (732)
... .....++|||||++|++.+.+.. .....|+
T Consensus 152 ~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~ 231 (740)
T 4a5s_A 152 KEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFF 231 (740)
T ss_dssp BTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEE
T ss_pred CccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEE
Confidence 000 00124889999999999864432 1123688
Q ss_pred EEeCCC---CCCCcccccccCCCCCcEEeeec-----ccc--eEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCC----
Q 004766 273 YCDLSA---LPEGLEGFKKRDGLLPFVKLIDG-----FDA--QYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPN---- 338 (732)
Q Consensus 273 ~~d~~~---~~~~~~~~~~~~~~~~~~~l~~~-----~~~--~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~---- 338 (732)
++|+++ +.. .....+... .+. ....|||||+.+++..++......|+++|+++++
T Consensus 232 v~d~~~~~~~~~-----------~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~ 300 (740)
T 4a5s_A 232 VVNTDSLSSVTN-----------ATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWN 300 (740)
T ss_dssp EEETTSCCSSSC-----------CCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEE
T ss_pred EEECCCCCCCCc-----------ceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccc
Confidence 888877 421 012233221 111 1125999999888888877667789999998765
Q ss_pred --CceEeccCCCCCce-----eEEEEecCC-EEE-EEEecCCeeEEEEEeCCCCceeeecccccceeeEeecccCCcEEE
Q 004766 339 --DWFEVIPEAERDVL-----ESATAVNLN-QMI-VSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVF 409 (732)
Q Consensus 339 --~~~~l~~~~~~~~l-----~~~~~~~~~-~l~-~~~~~~g~~~l~~~d~~~g~~~~~l~~~~g~v~~~~~s~d~~~l~ 409 (732)
....++.+.....+ ..+.|++|+ .++ +...++|..+|+++++++++. +.|+.....+..+. .+|++.++
T Consensus 301 ~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~-~~lT~g~~~v~~~~-~~d~~~i~ 378 (740)
T 4a5s_A 301 CLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDC-TFITKGTWEVIGIE-ALTSDYLY 378 (740)
T ss_dssp ECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSC-EESCCSSSCEEEEE-EECSSEEE
T ss_pred eeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCce-EecccCCEEEEEEE-EEeCCEEE
Confidence 12223222222222 357788764 555 666788889999999985554 77875554454432 25578887
Q ss_pred EEEec---CCCCceEEEEECCCC
Q 004766 410 ISFTS---FLIPGIVYQCNLKTE 429 (732)
Q Consensus 410 ~~~ss---~~~p~~~y~~d~~~~ 429 (732)
|..+. -..-..+|.+++.++
T Consensus 379 f~~~~~~~~~~~~~ly~v~~~g~ 401 (740)
T 4a5s_A 379 YISNEYKGMPGGRNLYKIQLIDY 401 (740)
T ss_dssp EEESCGGGCTTCBEEEEEETTEE
T ss_pred EEEecCCCCCceeEEEEEECCCC
Confidence 76654 122357888888765
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.75 E-value=9.7e-16 Score=165.81 Aligned_cols=245 Identities=13% Similarity=0.118 Sum_probs=169.9
Q ss_pred CCCcEEEEEEeccCCc-eEEEEEEECCCCceecccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCCcccE
Q 004766 141 EDAKYLAYALSYSGSD-WATIKLMRIEDQIVEADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHE 219 (732)
Q Consensus 141 PDG~~la~~~~~~G~e-~~~i~v~dl~~g~~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (732)
+.+++|+|+....+.+ ..+|++||++++..............++|||||+.|+|++.+. ....
T Consensus 141 ~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~----------------~~~~ 204 (415)
T 2hqs_A 141 AFRTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFES----------------GRSA 204 (415)
T ss_dssp CTTCEEEEEEECSSSSCCEEEEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTT----------------SSCE
T ss_pred cCCCEEEEEEecCCCCccceEEEEcCCCCCCEEEeCCCCcceeeEEcCCCCEEEEEEecC----------------CCcE
Confidence 4588999998754332 2699999998765433222222357899999999999997542 2357
Q ss_pred EEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCCCCcEEee
Q 004766 220 FYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLI 299 (732)
Q Consensus 220 v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l~ 299 (732)
|++|++.++... .+... ......++|||||++|++...... ...||++|+.++. ...+.
T Consensus 205 i~~~d~~tg~~~--~l~~~---~~~~~~~~~spdg~~la~~~~~~g--~~~i~~~d~~~~~--------------~~~l~ 263 (415)
T 2hqs_A 205 LVIQTLANGAVR--QVASF---PRHNGAPAFSPDGSKLAFALSKTG--SLNLYVMDLASGQ--------------IRQVT 263 (415)
T ss_dssp EEEEETTTCCEE--EEECC---SSCEEEEEECTTSSEEEEEECTTS--SCEEEEEETTTCC--------------EEECC
T ss_pred EEEEECCCCcEE--EeecC---CCcccCEEEcCCCCEEEEEEecCC--CceEEEEECCCCC--------------EEeCc
Confidence 999999876532 33322 234568999999999998876443 4679999998743 23333
Q ss_pred ecccc-eEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecCC-EEEEEEecCCeeEEEE
Q 004766 300 DGFDA-QYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLN-QMIVSYLSDVKYVLQI 377 (732)
Q Consensus 300 ~~~~~-~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~-~l~~~~~~~g~~~l~~ 377 (732)
..... ....|+|||+.|++.+++++ ..+|+.+|+.++. ...+..+. ..+..+.|++++ .|++....++...|++
T Consensus 264 ~~~~~~~~~~~spdg~~l~~~s~~~g-~~~i~~~d~~~~~-~~~l~~~~--~~~~~~~~spdG~~l~~~~~~~g~~~i~~ 339 (415)
T 2hqs_A 264 DGRSNNTEPTWFPDSQNLAFTSDQAG-RPQVYKVNINGGA-PQRITWEG--SQNQDADVSSDGKFMVMVSSNGGQQHIAK 339 (415)
T ss_dssp CCSSCEEEEEECTTSSEEEEEECTTS-SCEEEEEETTSSC-CEECCCSS--SEEEEEEECTTSSEEEEEEECSSCEEEEE
T ss_pred CCCCcccceEECCCCCEEEEEECCCC-CcEEEEEECCCCC-EEEEecCC--CcccCeEECCCCCEEEEEECcCCceEEEE
Confidence 32222 22369999999999887543 4689999998876 45554443 456778898864 5666666666789999
Q ss_pred EeCCCCceeeecccccceeeEeecccCCcEEEEEEecCCCCceEEEEECCCC
Q 004766 378 RDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTE 429 (732)
Q Consensus 378 ~d~~~g~~~~~l~~~~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~ 429 (732)
||+++|+. +.+.... .+..+.++||++.+++.... .....+|.+|+.++
T Consensus 340 ~d~~~~~~-~~l~~~~-~~~~~~~spdg~~l~~~s~~-~~~~~l~~~d~~g~ 388 (415)
T 2hqs_A 340 QDLATGGV-QVLSSTF-LDETPSLAPNGTMVIYSSSQ-GMGSVLNLVSTDGR 388 (415)
T ss_dssp EETTTCCE-EECCCSS-SCEEEEECTTSSEEEEEEEE-TTEEEEEEEETTSC
T ss_pred EECCCCCE-EEecCCC-CcCCeEEcCCCCEEEEEEcC-CCccEEEEEECCCC
Confidence 99987775 5555433 56678899999977765543 33458999998765
|
| >3u0v_A Lysophospholipase-like protein 1; alpha, beta hydrolase fold, hydrolase; 1.72A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.7e-17 Score=164.96 Aligned_cols=195 Identities=10% Similarity=0.021 Sum_probs=135.9
Q ss_pred CCccEEEEEcCCCCccCCCCcChhHHHHHHhc-----CcEEEEEcccCC------CCCchhHHhcc----cccCCccHHH
Q 004766 479 GSHPCLLYGYGGFNISVTPSFSVSRTILMRHL-----GAVFCIANIRGG------GEYGEEWHKGG----ALAKKQNCFD 543 (732)
Q Consensus 479 ~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~-----G~~v~~~~~rG~------g~~g~~~~~~~----~~~~~~~~~~ 543 (732)
++.|+||++||..+... .|.. +...|..+ |+.|++++.++. +..+..|+... ........++
T Consensus 21 ~~~p~vv~lHG~g~~~~--~~~~-~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 97 (239)
T 3u0v_A 21 RHSASLIFLHGSGDSGQ--GLRM-WIKQVLNQDLTFQHIKIIYPTAPPRSYTPMKGGISNVWFDRFKITNDCPEHLESID 97 (239)
T ss_dssp CCCEEEEEECCTTCCHH--HHHH-HHHHHHTSCCCCSSEEEEEECCCEEECGGGTTCEEECSSCCSSSSSSSCCCHHHHH
T ss_pred CCCcEEEEEecCCCchh--hHHH-HHHHHhhcccCCCceEEEeCCCCccccccCCCCccccceeccCCCcccccchhhHH
Confidence 57899999999765432 2322 23334433 799999998643 33444554411 1111223455
Q ss_pred HHHHHHHHHHHc---CCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCcccccccccCCCCCccccccCCCCCH
Q 004766 544 DFISASEYLISA---GYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHAWVSDFGCSEEE 620 (732)
Q Consensus 544 D~~~~~~~l~~~---~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~~~~~~~g~p~~~ 620 (732)
++...+..+++. ..+++++++|+|+|+||++++.++.++|+.++++|+.+|+.+....
T Consensus 98 ~~~~~l~~~~~~~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~~~~~~~~v~~~~~~~~~~~------------------- 158 (239)
T 3u0v_A 98 VMCQVLTDLIDEEVKSGIKKNRILIGGFSMGGCMAMHLAYRNHQDVAGVFALSSFLNKASA------------------- 158 (239)
T ss_dssp HHHHHHHHHHHHHHHTTCCGGGEEEEEETHHHHHHHHHHHHHCTTSSEEEEESCCCCTTCH-------------------
T ss_pred HHHHHHHHHHHHHHHhCCCcccEEEEEEChhhHHHHHHHHhCccccceEEEecCCCCchhH-------------------
Confidence 555555555433 3368899999999999999999999999999999999887643110
Q ss_pred HHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeCCC
Q 004766 621 EEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKA 700 (732)
Q Consensus 621 ~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 700 (732)
.+..+. .. . ...||+|++||.+|..||+.++.+++++|++. +.++++++++++
T Consensus 159 -~~~~~~------~~-~---------~~~pp~li~~G~~D~~v~~~~~~~~~~~l~~~----------~~~~~~~~~~g~ 211 (239)
T 3u0v_A 159 -VYQALQ------KS-N---------GVLPELFQCHGTADELVLHSWAEETNSMLKSL----------GVTTKFHSFPNV 211 (239)
T ss_dssp -HHHHHH------HC-C---------SCCCCEEEEEETTCSSSCHHHHHHHHHHHHHT----------TCCEEEEEETTC
T ss_pred -HHHHHH------hh-c---------cCCCCEEEEeeCCCCccCHHHHHHHHHHHHHc----------CCcEEEEEeCCC
Confidence 111111 11 1 13456999999999999999999999999987 888999999999
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHHHhCC
Q 004766 701 GHGVGLPTQKMIDEAADRYGFMAKMLGA 728 (732)
Q Consensus 701 gH~~~~~~~~~~~~~~~~~~fl~~~l~~ 728 (732)
||.+. .+....+.+||.++|..
T Consensus 212 ~H~~~------~~~~~~~~~~l~~~l~~ 233 (239)
T 3u0v_A 212 YHELS------KTELDILKLWILTKLPG 233 (239)
T ss_dssp CSSCC------HHHHHHHHHHHHHHCC-
T ss_pred CCcCC------HHHHHHHHHHHHHhCCC
Confidence 99986 23456788999998864
|
| >3b5e_A MLL8374 protein; NP_108484.1, carboxylesterase, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; 1.75A {Mesorhizobium loti} SCOP: c.69.1.14 | Back alignment and structure |
|---|
Probab=99.74 E-value=2.2e-17 Score=162.38 Aligned_cols=197 Identities=17% Similarity=0.131 Sum_probs=140.5
Q ss_pred eeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhccccc-CC---
Q 004766 463 TKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALA-KK--- 538 (732)
Q Consensus 463 ~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~-~~--- 538 (732)
..+...+..|.. ...|+||++||+.+... .|. .+...|+ .||.|+++|.++....|..|+...... ..
T Consensus 16 ~~l~~~~~~~~~----~~~p~vv~lHG~g~~~~--~~~-~~~~~l~-~~~~vv~~d~~~~~~~g~~~~~~~~~~~~~~~~ 87 (223)
T 3b5e_A 16 LAFPYRLLGAGK----ESRECLFLLHGSGVDET--TLV-PLARRIA-PTATLVAARGRIPQEDGFRWFERIDPTRFEQKS 87 (223)
T ss_dssp SSSCEEEESTTS----SCCCEEEEECCTTBCTT--TTH-HHHHHHC-TTSEEEEECCSEEETTEEESSCEEETTEECHHH
T ss_pred CCceEEEeCCCC----CCCCEEEEEecCCCCHH--HHH-HHHHhcC-CCceEEEeCCCCCcCCccccccccCCCcccHHH
Confidence 566666554432 23499999999876543 333 3455667 599999999887433255554322110 11
Q ss_pred -ccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCcccccccccCCCCCccccccCCC
Q 004766 539 -QNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHAWVSDFGCS 617 (732)
Q Consensus 539 -~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~~~~~~~g~p 617 (732)
....+|+.+.++++.++.-+++++++++|+|+||.+++.++.++|++++++|+.+|...... +
T Consensus 88 ~~~~~~~~~~~i~~~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~v~~~~~~~~~~----------------~ 151 (223)
T 3b5e_A 88 ILAETAAFAAFTNEAAKRHGLNLDHATFLGYSNGANLVSSLMLLHPGIVRLAALLRPMPVLDH----------------V 151 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCGGGEEEEEETHHHHHHHHHHHHSTTSCSEEEEESCCCCCSS----------------C
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcHHHHHHHHHHhCccccceEEEecCccCccc----------------c
Confidence 12356667777777766346889999999999999999999999999999999988653200 0
Q ss_pred CCHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEe
Q 004766 618 EEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIE 697 (732)
Q Consensus 618 ~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 697 (732)
+ .. . ...+|+|++||.+|..||+.++. +++.|++. +.+++++++
T Consensus 152 -------------~--~~-~---------~~~~P~li~~G~~D~~v~~~~~~-~~~~l~~~----------g~~~~~~~~ 195 (223)
T 3b5e_A 152 -------------P--AT-D---------LAGIRTLIIAGAADETYGPFVPA-LVTLLSRH----------GAEVDARII 195 (223)
T ss_dssp -------------C--CC-C---------CTTCEEEEEEETTCTTTGGGHHH-HHHHHHHT----------TCEEEEEEE
T ss_pred -------------c--cc-c---------ccCCCEEEEeCCCCCcCCHHHHH-HHHHHHHC----------CCceEEEEe
Confidence 0 11 1 25689999999999999999999 99999987 888999999
Q ss_pred CCCCCCCCCchHHHHHHHHHHHHHHHHHh
Q 004766 698 RKAGHGVGLPTQKMIDEAADRYGFMAKML 726 (732)
Q Consensus 698 ~~~gH~~~~~~~~~~~~~~~~~~fl~~~l 726 (732)
+ +||.+.. +....+.+||.+.+
T Consensus 196 ~-~gH~~~~------~~~~~i~~~l~~~~ 217 (223)
T 3b5e_A 196 P-SGHDIGD------PDAAIVRQWLAGPI 217 (223)
T ss_dssp S-CCSCCCH------HHHHHHHHHHHCC-
T ss_pred c-CCCCcCH------HHHHHHHHHHHhhh
Confidence 9 9999852 22346778887654
|
| >1auo_A Carboxylesterase; hydrolase; 1.80A {Pseudomonas fluorescens} SCOP: c.69.1.14 PDB: 1aur_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=9.3e-17 Score=156.94 Aligned_cols=190 Identities=16% Similarity=0.108 Sum_probs=134.6
Q ss_pred CCccEEEEEcCCCCccCCCCcChhHHHHHHh--cCcEEEEEcccC------CCCCchhHHhc-ccc---cCCccHH----
Q 004766 479 GSHPCLLYGYGGFNISVTPSFSVSRTILMRH--LGAVFCIANIRG------GGEYGEEWHKG-GAL---AKKQNCF---- 542 (732)
Q Consensus 479 ~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~--~G~~v~~~~~rG------~g~~g~~~~~~-~~~---~~~~~~~---- 542 (732)
++.|+||++||..+... .|. .+...|.+ +||.|+++|.+| +|..+..|++. +.. ......+
T Consensus 12 ~~~~~vv~~HG~~~~~~--~~~-~~~~~l~~~~~g~~v~~~d~p~~~~~~~~g~~~~~w~d~~g~g~~~~~~~~~~~~~~ 88 (218)
T 1auo_A 12 PADACVIWLHGLGADRY--DFM-PVAEALQESLLTTRFVLPQAPTRPVTINGGYEMPSWYDIKAMSPARSISLEELEVSA 88 (218)
T ss_dssp CCSEEEEEECCTTCCTT--TTH-HHHHHHHTTCTTEEEEECCCCEEEEGGGTTEEEECSSCEEECSSSCEECHHHHHHHH
T ss_pred CCCcEEEEEecCCCChh--hHH-HHHHHHhhcCCceEEEeCCCCCccccCCCCCcccceecCcCCCcccccchHHHHHHH
Confidence 67899999999876543 233 34567776 899999999874 22222233321 111 1112233
Q ss_pred HHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHh-hCCCeeeEEEEcCCcccccccccCCCCCccccccCCCCCHH
Q 004766 543 DDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACIN-QRPDLFGCALAHVGVMDMLRYHKFTIGHAWVSDFGCSEEEE 621 (732)
Q Consensus 543 ~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~-~~p~~f~a~v~~~p~~d~~~~~~~~~~~~~~~~~g~p~~~~ 621 (732)
+|+.+.++++.+. .+++++++++|+|+||++++.++. ++|++++++|+.+|..+. . .+..++
T Consensus 89 ~~~~~~~~~~~~~-~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~v~~~~~~~~---~------~~~~~~------- 151 (218)
T 1auo_A 89 KMVTDLIEAQKRT-GIDASRIFLAGFSQGGAVVFHTAFINWQGPLGGVIALSTYAPT---F------GDELEL------- 151 (218)
T ss_dssp HHHHHHHHHHHHT-TCCGGGEEEEEETHHHHHHHHHHHTTCCSCCCEEEEESCCCTT---C------CTTCCC-------
T ss_pred HHHHHHHHHHHHc-CCCcccEEEEEECHHHHHHHHHHHhcCCCCccEEEEECCCCCC---c------hhhhhh-------
Confidence 4444455555542 367889999999999999999999 999999999999997654 0 010100
Q ss_pred HHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeCCCC
Q 004766 622 EFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAG 701 (732)
Q Consensus 622 ~~~~~~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g 701 (732)
. .. .+.+|+|+++|.+|..||+.++.++++.++.. +.++++++++ +|
T Consensus 152 --------~----~~----------~~~~P~l~i~G~~D~~~~~~~~~~~~~~l~~~----------g~~~~~~~~~-~g 198 (218)
T 1auo_A 152 --------S----AS----------QQRIPALCLHGQYDDVVQNAMGRSAFEHLKSR----------GVTVTWQEYP-MG 198 (218)
T ss_dssp --------C----HH----------HHTCCEEEEEETTCSSSCHHHHHHHHHHHHTT----------TCCEEEEEES-CS
T ss_pred --------h----hc----------ccCCCEEEEEeCCCceecHHHHHHHHHHHHhC----------CCceEEEEec-CC
Confidence 0 01 15679999999999999999999999999976 7789999999 99
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHhC
Q 004766 702 HGVGLPTQKMIDEAADRYGFMAKMLG 727 (732)
Q Consensus 702 H~~~~~~~~~~~~~~~~~~fl~~~l~ 727 (732)
|.+.. +....+.+||.++|+
T Consensus 199 H~~~~------~~~~~~~~~l~~~l~ 218 (218)
T 1auo_A 199 HEVLP------QEIHDIGAWLAARLG 218 (218)
T ss_dssp SSCCH------HHHHHHHHHHHHHHC
T ss_pred CccCH------HHHHHHHHHHHHHhC
Confidence 98743 234568889988763
|
| >3rm3_A MGLP, thermostable monoacylglycerol lipase; alpha/beta hydrolase fold, hydrolase; 1.20A {Bacillus SP} PDB: 3rli_A | Back alignment and structure |
|---|
Probab=99.74 E-value=5.2e-17 Score=164.49 Aligned_cols=214 Identities=15% Similarity=0.136 Sum_probs=144.1
Q ss_pred CCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCccHHHHHHHHHHHHHHcCCC
Q 004766 479 GSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYT 558 (732)
Q Consensus 479 ~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~ 558 (732)
++.|+||++||..+... .|. .+...|.++||.|+++|+||.|......... .-....+|+.++++++.++
T Consensus 38 g~~~~vv~~HG~~~~~~--~~~-~~~~~l~~~G~~v~~~d~~G~G~s~~~~~~~----~~~~~~~d~~~~i~~l~~~--- 107 (270)
T 3rm3_A 38 NGPVGVLLVHGFTGTPH--SMR-PLAEAYAKAGYTVCLPRLKGHGTHYEDMERT----TFHDWVASVEEGYGWLKQR--- 107 (270)
T ss_dssp CSSEEEEEECCTTCCGG--GTH-HHHHHHHHTTCEEEECCCTTCSSCHHHHHTC----CHHHHHHHHHHHHHHHHTT---
T ss_pred CCCeEEEEECCCCCChh--HHH-HHHHHHHHCCCEEEEeCCCCCCCCccccccC----CHHHHHHHHHHHHHHHHhh---
Confidence 35599999999876543 243 3455666689999999999998765433221 1223467888889888866
Q ss_pred CCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCccccccccc----CCCCCccccccCCC-------------CCHH
Q 004766 559 QSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHK----FTIGHAWVSDFGCS-------------EEEE 621 (732)
Q Consensus 559 d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~----~~~~~~~~~~~g~p-------------~~~~ 621 (732)
.++++++|+|+||++++.++.++|+ ++++|+..|..++..... ......|...++.. ....
T Consensus 108 -~~~i~l~G~S~Gg~~a~~~a~~~p~-v~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (270)
T 3rm3_A 108 -CQTIFVTGLSMGGTLTLYLAEHHPD-ICGIVPINAAVDIPAIAAGMTGGGELPRYLDSIGSDLKNPDVKELAYEKTPTA 185 (270)
T ss_dssp -CSEEEEEEETHHHHHHHHHHHHCTT-CCEEEEESCCSCCHHHHHHSCC---CCSEEECCCCCCSCTTCCCCCCSEEEHH
T ss_pred -CCcEEEEEEcHhHHHHHHHHHhCCC-ccEEEEEcceecccccccchhcchhHHHHHHHhCccccccchHhhcccccChh
Confidence 5799999999999999999999999 999999998776532211 00001121211111 0011
Q ss_pred HHHHHHh-c-CcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeCC
Q 004766 622 EFYWLIK-Y-SPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERK 699 (732)
Q Consensus 622 ~~~~~~~-~-sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 699 (732)
.+..+.. . .....+.+ +.+|+|+++|.+|..||+.++.++++++. +.++++.++++
T Consensus 186 ~~~~~~~~~~~~~~~~~~----------~~~P~lii~G~~D~~~~~~~~~~~~~~~~------------~~~~~~~~~~~ 243 (270)
T 3rm3_A 186 SLLQLARLMAQTKAKLDR----------IVCPALIFVSDEDHVVPPGNADIIFQGIS------------STEKEIVRLRN 243 (270)
T ss_dssp HHHHHHHHHHHHHHTGGG----------CCSCEEEEEETTCSSSCTTHHHHHHHHSC------------CSSEEEEEESS
T ss_pred HHHHHHHHHHHHHhhhhh----------cCCCEEEEECCCCcccCHHHHHHHHHhcC------------CCcceEEEeCC
Confidence 1111111 0 11122333 67899999999999999999988887765 44679999999
Q ss_pred CCCCCCCchHHHHHHHHHHHHHHHHHhC
Q 004766 700 AGHGVGLPTQKMIDEAADRYGFMAKMLG 727 (732)
Q Consensus 700 ~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 727 (732)
+||.+..... ..+....+.+||.++.|
T Consensus 244 ~gH~~~~~~~-~~~~~~~i~~fl~~~~~ 270 (270)
T 3rm3_A 244 SYHVATLDYD-QPMIIERSLEFFAKHAG 270 (270)
T ss_dssp CCSCGGGSTT-HHHHHHHHHHHHHHHC-
T ss_pred CCcccccCcc-HHHHHHHHHHHHHhcCC
Confidence 9999865433 23566778999988754
|
| >3cn9_A Carboxylesterase; alpha/beta hydrolase fold super-family, hydrolase; HET: 2PE; 2.09A {Pseudomonas aeruginosa} PDB: 3cn7_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=6e-17 Score=159.58 Aligned_cols=190 Identities=16% Similarity=0.124 Sum_probs=133.9
Q ss_pred CCCCccEEEEEcCCCCccCCCCcChhHHHHHHh--cCcEEEEEcccCC------CCCchhHHhc-ccc---cCCccHHHH
Q 004766 477 LDGSHPCLLYGYGGFNISVTPSFSVSRTILMRH--LGAVFCIANIRGG------GEYGEEWHKG-GAL---AKKQNCFDD 544 (732)
Q Consensus 477 ~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~--~G~~v~~~~~rG~------g~~g~~~~~~-~~~---~~~~~~~~D 544 (732)
.+++.|+||++||+.+... .|. .+...|++ +||.|+++|.||. |..+..|.+. +.. ......+++
T Consensus 20 ~~~~~~~vv~lHG~~~~~~--~~~-~~~~~l~~~~~g~~v~~~d~p~~~~~~~~g~~~~~w~d~~g~g~~~~~~~~~~~~ 96 (226)
T 3cn9_A 20 APNADACIIWLHGLGADRT--DFK-PVAEALQMVLPSTRFILPQAPSQAVTVNGGWVMPSWYDILAFSPARAIDEDQLNA 96 (226)
T ss_dssp CTTCCEEEEEECCTTCCGG--GGH-HHHHHHHHHCTTEEEEECCCCEEECGGGTSCEEECSSCBCCSSSTTCBCHHHHHH
T ss_pred CCCCCCEEEEEecCCCChH--HHH-HHHHHHhhcCCCcEEEeecCCCCccccCCCCccccccccccccccccccchhHHH
Confidence 3567899999999876542 233 34556666 8999999998853 2112222221 111 112233444
Q ss_pred HHH----HHHHHHHcCCCCCCcEEEEecChhHHHHHHHHh-hCCCeeeEEEEcCCcccccccccCCCCCccccccCCCCC
Q 004766 545 FIS----ASEYLISAGYTQSRKLCIEGGSNGGLLVGACIN-QRPDLFGCALAHVGVMDMLRYHKFTIGHAWVSDFGCSEE 619 (732)
Q Consensus 545 ~~~----~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~-~~p~~f~a~v~~~p~~d~~~~~~~~~~~~~~~~~g~p~~ 619 (732)
..+ +++++.+. .+++++++++|+|+||++++.++. ++|++++++|+.+|+.+.....
T Consensus 97 ~~~~~~~~~~~~~~~-~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~v~~~~~~~~~~~~----------------- 158 (226)
T 3cn9_A 97 SADQVIALIDEQRAK-GIAAERIILAGFSQGGAVVLHTAFRRYAQPLGGVLALSTYAPTFDDL----------------- 158 (226)
T ss_dssp HHHHHHHHHHHHHHT-TCCGGGEEEEEETHHHHHHHHHHHHTCSSCCSEEEEESCCCGGGGGC-----------------
T ss_pred HHHHHHHHHHHHHHc-CCCcccEEEEEECHHHHHHHHHHHhcCccCcceEEEecCcCCCchhh-----------------
Confidence 444 44444432 367789999999999999999999 9999999999999976542111
Q ss_pred HHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeCC
Q 004766 620 EEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERK 699 (732)
Q Consensus 620 ~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 699 (732)
.+.+ . .+.+|+|+++|.+|..||+.++.++++.|... +.++++++++
T Consensus 159 --------~~~~----~----------~~~~P~lii~G~~D~~~~~~~~~~~~~~l~~~----------g~~~~~~~~~- 205 (226)
T 3cn9_A 159 --------ALDE----R----------HKRIPVLHLHGSQDDVVDPALGRAAHDALQAQ----------GVEVGWHDYP- 205 (226)
T ss_dssp --------CCCT----G----------GGGCCEEEEEETTCSSSCHHHHHHHHHHHHHT----------TCCEEEEEES-
T ss_pred --------hhcc----c----------ccCCCEEEEecCCCCccCHHHHHHHHHHHHHc----------CCceeEEEec-
Confidence 0011 1 26789999999999999999999999999987 7789999999
Q ss_pred CCCCCCCchHHHHHHHHHHHHHHHHHh
Q 004766 700 AGHGVGLPTQKMIDEAADRYGFMAKML 726 (732)
Q Consensus 700 ~gH~~~~~~~~~~~~~~~~~~fl~~~l 726 (732)
+||.+.. +....+.+||.++|
T Consensus 206 ~gH~~~~------~~~~~i~~~l~~~l 226 (226)
T 3cn9_A 206 MGHEVSL------EEIHDIGAWLRKRL 226 (226)
T ss_dssp CCSSCCH------HHHHHHHHHHHHHC
T ss_pred CCCCcch------hhHHHHHHHHHhhC
Confidence 9998742 23456888998765
|
| >2r8b_A AGR_C_4453P, uncharacterized protein ATU2452; APC6088, agrobacterium tumefaciens STR. C58 structural genomics, PSI-2; 2.56A {Agrobacterium tumefaciens str} SCOP: c.69.1.14 | Back alignment and structure |
|---|
Probab=99.73 E-value=2.1e-17 Score=165.68 Aligned_cols=184 Identities=13% Similarity=0.086 Sum_probs=133.9
Q ss_pred CCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEE--cccCCCCCchhHHhcc-cccCC----ccHHHHHHHHHHH
Q 004766 479 GSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIA--NIRGGGEYGEEWHKGG-ALAKK----QNCFDDFISASEY 551 (732)
Q Consensus 479 ~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~--~~rG~g~~g~~~~~~~-~~~~~----~~~~~D~~~~~~~ 551 (732)
++.|+||++||+.+... .|. .+...|+ .+|.|+++ +.||.|+++ |.... ..... ....+|+.+++++
T Consensus 60 ~~~p~vv~~HG~~~~~~--~~~-~~~~~l~-~~~~v~~~~~d~~g~g~s~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 133 (251)
T 2r8b_A 60 AGAPLFVLLHGTGGDEN--QFF-DFGARLL-PQATILSPVGDVSEHGAAR--FFRRTGEGVYDMVDLERATGKMADFIKA 133 (251)
T ss_dssp TTSCEEEEECCTTCCHH--HHH-HHHHHHS-TTSEEEEECCSEEETTEEE--SSCBCGGGCBCHHHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHh--HHH-HHHHhcC-CCceEEEecCCcCCCCCcc--cccCCCCCcCCHHHHHHHHHHHHHHHHH
Confidence 56899999999876532 232 2445666 57999999 788876432 22110 01111 1236788888888
Q ss_pred HHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCcccccccccCCCCCccccccCCCCCHHHHHHHHhcCc
Q 004766 552 LISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHAWVSDFGCSEEEEEFYWLIKYSP 631 (732)
Q Consensus 552 l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~sp 631 (732)
+.++. +.++++++|+|+||++++.++.++|++++++|+.+|+.+... .+
T Consensus 134 ~~~~~--~~~~i~l~G~S~Gg~~a~~~a~~~p~~v~~~v~~~~~~~~~~-----------------------------~~ 182 (251)
T 2r8b_A 134 NREHY--QAGPVIGLGFSNGANILANVLIEQPELFDAAVLMHPLIPFEP-----------------------------KI 182 (251)
T ss_dssp HHHHH--TCCSEEEEEETHHHHHHHHHHHHSTTTCSEEEEESCCCCSCC-----------------------------CC
T ss_pred HHhcc--CCCcEEEEEECHHHHHHHHHHHhCCcccCeEEEEecCCCccc-----------------------------cc
Confidence 87663 778999999999999999999999999999999998764311 00
Q ss_pred ccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeCCCCCCCCCchHHH
Q 004766 632 LHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKM 711 (732)
Q Consensus 632 ~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~ 711 (732)
... .+.+|+|+++|.+|..||+.++.+++++|+++ +.++.+ +++++||++..
T Consensus 183 ---~~~---------~~~~P~li~~g~~D~~~~~~~~~~~~~~l~~~----------~~~~~~-~~~~~gH~~~~----- 234 (251)
T 2r8b_A 183 ---SPA---------KPTRRVLITAGERDPICPVQLTKALEESLKAQ----------GGTVET-VWHPGGHEIRS----- 234 (251)
T ss_dssp ---CCC---------CTTCEEEEEEETTCTTSCHHHHHHHHHHHHHH----------SSEEEE-EEESSCSSCCH-----
T ss_pred ---ccc---------ccCCcEEEeccCCCccCCHHHHHHHHHHHHHc----------CCeEEE-EecCCCCccCH-----
Confidence 111 25789999999999999999999999999987 777777 55678998842
Q ss_pred HHHHHHHHHHHHHHhCC
Q 004766 712 IDEAADRYGFMAKMLGA 728 (732)
Q Consensus 712 ~~~~~~~~~fl~~~l~~ 728 (732)
+....+.+||.++|+.
T Consensus 235 -~~~~~~~~~l~~~l~~ 250 (251)
T 2r8b_A 235 -GEIDAVRGFLAAYGGG 250 (251)
T ss_dssp -HHHHHHHHHHGGGC--
T ss_pred -HHHHHHHHHHHHhcCC
Confidence 3345688999988864
|
| >3dkr_A Esterase D; alpha beta hydrolase, mechanism, catalytic triad, rotation; 1.60A {Lactobacillus rhamnosus} SCOP: c.69.1.0 PDB: 3dlt_A 3dyi_A 3dyv_A 3e1g_A | Back alignment and structure |
|---|
Probab=99.73 E-value=3.1e-17 Score=163.56 Aligned_cols=216 Identities=12% Similarity=0.056 Sum_probs=143.7
Q ss_pred CCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCC-chhHHhcccccCCccHHHHHHHHHHHHHHcC
Q 004766 478 DGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEY-GEEWHKGGALAKKQNCFDDFISASEYLISAG 556 (732)
Q Consensus 478 ~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~-g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~ 556 (732)
.+..|+||++||..+... .|. .+...|.++||.|+++|+||.|.. +....... ......+|+.++++++..+
T Consensus 19 ~~~~~~vv~~HG~~~~~~--~~~-~~~~~l~~~G~~v~~~d~~g~g~s~~~~~~~~~---~~~~~~~d~~~~i~~l~~~- 91 (251)
T 3dkr_A 19 EGTDTGVVLLHAYTGSPN--DMN-FMARALQRSGYGVYVPLFSGHGTVEPLDILTKG---NPDIWWAESSAAVAHMTAK- 91 (251)
T ss_dssp CCSSEEEEEECCTTCCGG--GGH-HHHHHHHHTTCEEEECCCTTCSSSCTHHHHHHC---CHHHHHHHHHHHHHHHHTT-
T ss_pred CCCCceEEEeCCCCCCHH--HHH-HHHHHHHHCCCEEEecCCCCCCCCChhhhcCcc---cHHHHHHHHHHHHHHHHHh-
Confidence 356789999999876643 343 345566669999999999998876 33332210 1122367888889998876
Q ss_pred CCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCcccccccccCCCC---CccccccCCCCCHHH--------HHH
Q 004766 557 YTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIG---HAWVSDFGCSEEEEE--------FYW 625 (732)
Q Consensus 557 ~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~---~~~~~~~g~p~~~~~--------~~~ 625 (732)
.++++++|+|+||++++.++.++|++++++|+..|+............ ..+....+....... ...
T Consensus 92 ---~~~~~l~G~S~Gg~~a~~~a~~~p~~~~~~i~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (251)
T 3dkr_A 92 ---YAKVFVFGLSLGGIFAMKALETLPGITAGGVFSSPILPGKHHLVPGFLKYAEYMNRLAGKSDESTQILAYLPGQLAA 168 (251)
T ss_dssp ---CSEEEEEESHHHHHHHHHHHHHCSSCCEEEESSCCCCTTCBCHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHH
T ss_pred ---cCCeEEEEechHHHHHHHHHHhCccceeeEEEecchhhccchhhHHHHHHHHHHHhhcccCcchhhHHhhhHHHHHH
Confidence 579999999999999999999999999999999988763211100000 000000111101111 111
Q ss_pred HHhc--CcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeCCCCCC
Q 004766 626 LIKY--SPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHG 703 (732)
Q Consensus 626 ~~~~--sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~ 703 (732)
+... .+...+.+ +.+|+|+++|.+|..||+.++.++++++.. ..++.+++++++||.
T Consensus 169 ~~~~~~~~~~~~~~----------~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~gH~ 227 (251)
T 3dkr_A 169 IDQFATTVAADLNL----------VKQPTFIGQAGQDELVDGRLAYQLRDALIN-----------AARVDFHWYDDAKHV 227 (251)
T ss_dssp HHHHHHHHHHTGGG----------CCSCEEEEEETTCSSBCTTHHHHHHHHCTT-----------CSCEEEEEETTCCSC
T ss_pred HHHHHHHHhccccc----------cCCCEEEEecCCCcccChHHHHHHHHHhcC-----------CCCceEEEeCCCCcc
Confidence 1111 01223333 678999999999999999999998888763 046899999999999
Q ss_pred CCCchHHHHHHHHHHHHHHHHH
Q 004766 704 VGLPTQKMIDEAADRYGFMAKM 725 (732)
Q Consensus 704 ~~~~~~~~~~~~~~~~~fl~~~ 725 (732)
...... ..+....+.+||.+.
T Consensus 228 ~~~~~~-~~~~~~~i~~fl~~~ 248 (251)
T 3dkr_A 228 ITVNSA-HHALEEDVIAFMQQE 248 (251)
T ss_dssp TTTSTT-HHHHHHHHHHHHHTT
T ss_pred cccccc-hhHHHHHHHHHHHhh
Confidence 865532 245667788898764
|
| >3bdi_A Uncharacterized protein TA0194; NP_393672.1, predicted CIB-like hydrolase, structural genomi center for structural genomics; HET: MSE; 1.45A {Thermoplasma acidophilum dsm 1728} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.4e-16 Score=154.22 Aligned_cols=199 Identities=15% Similarity=0.082 Sum_probs=141.2
Q ss_pred EEEEEEccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChh-HHHHHHhcCcEEEEEcccCCCCCchhHH
Q 004766 452 HQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVS-RTILMRHLGAVFCIANIRGGGEYGEEWH 530 (732)
Q Consensus 452 ~~~~~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~-~~~~l~~~G~~v~~~~~rG~g~~g~~~~ 530 (732)
+...++ .+| .+|+++++.|.+ +.|+||++||+.+... .|... +...|.++||.|+++|+||.|....
T Consensus 5 ~~~~~~-~~g-~~l~~~~~~~~~-----~~~~vv~~hG~~~~~~--~~~~~~~~~~l~~~G~~v~~~d~~g~g~s~~--- 72 (207)
T 3bdi_A 5 QEEFID-VNG-TRVFQRKMVTDS-----NRRSIALFHGYSFTSM--DWDKADLFNNYSKIGYNVYAPDYPGFGRSAS--- 72 (207)
T ss_dssp EEEEEE-ETT-EEEEEEEECCTT-----CCEEEEEECCTTCCGG--GGGGGTHHHHHHTTTEEEEEECCTTSTTSCC---
T ss_pred eeEEEe-eCC-cEEEEEEEeccC-----CCCeEEEECCCCCCcc--ccchHHHHHHHHhCCCeEEEEcCCcccccCc---
Confidence 333343 489 999999998864 5789999999877643 34331 4556666999999999999775410
Q ss_pred hcccccCCcc-HHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCcccccccccCCCCCc
Q 004766 531 KGGALAKKQN-CFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHA 609 (732)
Q Consensus 531 ~~~~~~~~~~-~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~~ 609 (732)
.. ...... .++++.+.+..++++ .+.++++++|+|+||.++..++.++|++++++|+..|.... .
T Consensus 73 ~~--~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~v~~~~~~~~-~--------- 138 (207)
T 3bdi_A 73 SE--KYGIDRGDLKHAAEFIRDYLKA--NGVARSVIMGASMGGGMVIMTTLQYPDIVDGIIAVAPAWVE-S--------- 138 (207)
T ss_dssp CT--TTCCTTCCHHHHHHHHHHHHHH--TTCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSCG-G---------
T ss_pred cc--CCCCCcchHHHHHHHHHHHHHH--cCCCceEEEEECccHHHHHHHHHhCchhheEEEEeCCcccc-c---------
Confidence 00 011222 678888888877765 34579999999999999999999999999999998886211 0
Q ss_pred cccccCCCCCHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhcCCCCCCCCC
Q 004766 610 WVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQT 689 (732)
Q Consensus 610 ~~~~~g~p~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~ 689 (732)
+ . ..+.+ +..|+|+++|.+|..|++..+.++.+.+.
T Consensus 139 ----~--------~---------~~~~~----------~~~p~l~i~g~~D~~~~~~~~~~~~~~~~------------- 174 (207)
T 3bdi_A 139 ----L--------K---------GDMKK----------IRQKTLLVWGSKDHVVPIALSKEYASIIS------------- 174 (207)
T ss_dssp ----G--------H---------HHHTT----------CCSCEEEEEETTCTTTTHHHHHHHHHHST-------------
T ss_pred ----h--------h---------HHHhh----------ccCCEEEEEECCCCccchHHHHHHHHhcC-------------
Confidence 0 0 01122 56799999999999999988887776653
Q ss_pred CCEEEEEeCCCCCCCCCchHHHHHHHHHHHHHHH
Q 004766 690 NPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMA 723 (732)
Q Consensus 690 ~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~ 723 (732)
++.+.+++++||...... ..+....+.+||.
T Consensus 175 -~~~~~~~~~~~H~~~~~~--~~~~~~~i~~fl~ 205 (207)
T 3bdi_A 175 -GSRLEIVEGSGHPVYIEK--PEEFVRITVDFLR 205 (207)
T ss_dssp -TCEEEEETTCCSCHHHHS--HHHHHHHHHHHHH
T ss_pred -CceEEEeCCCCCCccccC--HHHHHHHHHHHHh
Confidence 358889999999864322 1234555667775
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.8e-16 Score=168.48 Aligned_cols=257 Identities=12% Similarity=0.046 Sum_probs=161.8
Q ss_pred EeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecccccceee-eeEEEEeCCcEEEEEEecCCCCCCCCCCCCccc
Q 004766 135 IKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWFKF-SSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETD 213 (732)
Q Consensus 135 ~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~~~~~~-~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~ 213 (732)
..++|||||++|||+.+.+|. .+|+++|+++|+....+...... ..+.|||||+.|+|++.+
T Consensus 39 ~~~~~SpdG~~l~~~~~~~g~--~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~--------------- 101 (396)
T 3c5m_A 39 YQKCFTQDGKKLLFAGDFDGN--RNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNE--------------- 101 (396)
T ss_dssp TSCCBCTTSCEEEEEECTTSS--CEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETT---------------
T ss_pred ecCcCCCCCCEEEEEEecCCC--ceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcC---------------
Confidence 467899999999999887665 47899999999865433322221 348999999999998632
Q ss_pred CCcccEEEEEECCCCCCCCeEEEecCCCCeeEEE-------------------eEEecCCcEEEEEEecCCcceEEEEEE
Q 004766 214 SNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFS-------------------GHVTEDGQYLVMCIEENCDPVNKVYYC 274 (732)
Q Consensus 214 ~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~-------------------~~~SpDg~~l~~~~~~~~~~~~~l~~~ 274 (732)
.+||++++.++.. ..++..+.. +... +.|||||+++++...........||++
T Consensus 102 ----~~l~~~d~~~~~~--~~~~~~~~~--~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~ 173 (396)
T 3c5m_A 102 ----LNLMKVDLETLEE--QVIYTVDEE--WKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKV 173 (396)
T ss_dssp ----TEEEEEETTTCCE--EEEEECCTT--EEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEE
T ss_pred ----CcEEEEECCCCCc--EEEEecccc--cCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEE
Confidence 2699999877643 244443321 2111 345666666554321001125789999
Q ss_pred eCCCCCCCcccccccCCCCCcEEeeeccc-ceEEEEEe-cCCeEEEEeCCCC--CCceEEEEeCCCCCCceEeccCCCCC
Q 004766 275 DLSALPEGLEGFKKRDGLLPFVKLIDGFD-AQYEVIAN-DDTVFTFLTNKDA--PKYKIIRVDLKEPNDWFEVIPEAERD 350 (732)
Q Consensus 275 d~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~s~-dg~~l~~~s~~~~--~~~~l~~~d~~~~~~~~~l~~~~~~~ 350 (732)
|++++. ...+..... .....|+| ||++|++.++... ...+|+.++++++. ++.+..+....
T Consensus 174 d~~~g~--------------~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~-~~~l~~~~~~~ 238 (396)
T 3c5m_A 174 DIETGE--------------LEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSN-VRKIKEHAEGE 238 (396)
T ss_dssp ETTTCC--------------EEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCC-CEESSCCCTTE
T ss_pred ECCCCc--------------EEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCc-eeEeeccCCCc
Confidence 998753 233333221 22336899 8888998876221 12689999998765 55665532234
Q ss_pred ceeEEEEecCC-EEEEEEecCCeeE--EEEEeCCCCceeeecccccceeeEeeccc-CCcEEEEEEecCCCC--------
Q 004766 351 VLESATAVNLN-QMIVSYLSDVKYV--LQIRDLKNGSLLHQLPIEIGSVNAISARR-EDSVVFISFTSFLIP-------- 418 (732)
Q Consensus 351 ~l~~~~~~~~~-~l~~~~~~~g~~~--l~~~d~~~g~~~~~l~~~~g~v~~~~~s~-d~~~l~~~~ss~~~p-------- 418 (732)
.+..+.|++++ .|++....++... |+++|+++|+. +.+....+ .. +.+++ |++.+++.. +. .|
T Consensus 239 ~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~-~~l~~~~~-~~-~~~s~~dg~~l~~~~-~~-~p~~~~~~~~ 313 (396)
T 3c5m_A 239 SCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLEN-EEVMVMPP-CS-HLMSNFDGSLMVGDG-CD-APVDVADADS 313 (396)
T ss_dssp EEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCE-EEEEECCS-EE-EEEECSSSSEEEEEE-CC-C---------
T ss_pred cccceEECCCCCEEEEEecCCCCccceEEEEECCCCCe-EEeeeCCC-CC-CCccCCCCceEEEec-CC-cceeeccccc
Confidence 56778888764 5777766655544 99999987765 44432122 22 66778 888655433 22 33
Q ss_pred ------ceEEEEECCCCCCceEEEEe
Q 004766 419 ------GIVYQCNLKTETPEMKIFRE 438 (732)
Q Consensus 419 ------~~~y~~d~~~~~~~~~~l~~ 438 (732)
..+|.+|+.+++ .+.+..
T Consensus 314 ~~~~~~~~i~~~d~~~~~--~~~l~~ 337 (396)
T 3c5m_A 314 YNIENDPFLYVLNTKAKS--AQKLCK 337 (396)
T ss_dssp -CCCCCCEEEEEETTTTB--CCEEEE
T ss_pred cccCCCCcEEEEecccCc--eEEccC
Confidence 789999998874 444443
|
| >4f0j_A Probable hydrolytic enzyme; alpha/beta hydrolase fold, structural genomics, joint center structural genomics, JCSG; HET: MSE; 1.50A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.72 E-value=2.3e-16 Score=163.13 Aligned_cols=238 Identities=13% Similarity=0.074 Sum_probs=150.7
Q ss_pred ceEEEEEEEccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchh
Q 004766 449 FHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEE 528 (732)
Q Consensus 449 ~~~~~~~~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~ 528 (732)
+..+.+.+++ +| ..+.+.++.... .++..|+||++||..+... .|.. +...|.++||.|+++|+||.|....
T Consensus 18 ~~~~~~~~~~-~~-~~~~~~~~~~~~--~~~~~p~vv~~hG~~~~~~--~~~~-~~~~l~~~g~~v~~~d~~G~G~s~~- 89 (315)
T 4f0j_A 18 YPVHYLDFTS-QG-QPLSMAYLDVAP--KKANGRTILLMHGKNFCAG--TWER-TIDVLADAGYRVIAVDQVGFCKSSK- 89 (315)
T ss_dssp SCCEEEEEEE-TT-EEEEEEEEEECC--SSCCSCEEEEECCTTCCGG--GGHH-HHHHHHHTTCEEEEECCTTSTTSCC-
T ss_pred ccceeEEEec-CC-CCeeEEEeecCC--CCCCCCeEEEEcCCCCcch--HHHH-HHHHHHHCCCeEEEeecCCCCCCCC-
Confidence 3556677765 56 677766555543 2367799999999876643 3443 4455665899999999999886432
Q ss_pred HHhcccccCCccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCcccccccc---cCC
Q 004766 529 WHKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYH---KFT 605 (732)
Q Consensus 529 ~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~---~~~ 605 (732)
......+++|+.+.+..+++. .+.+++.++|+|+||++++.++.++|++++++|+..|........ ...
T Consensus 90 ------~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~ 161 (315)
T 4f0j_A 90 ------PAHYQYSFQQLAANTHALLER--LGVARASVIGHSMGGMLATRYALLYPRQVERLVLVNPIGLEDWKALGVPWR 161 (315)
T ss_dssp ------CSSCCCCHHHHHHHHHHHHHH--TTCSCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCSCSSCHHHHTCCCC
T ss_pred ------CCccccCHHHHHHHHHHHHHH--hCCCceEEEEecHHHHHHHHHHHhCcHhhheeEEecCcccCCcccccchhh
Confidence 111245678888888877776 345699999999999999999999999999999988853210000 000
Q ss_pred CCCcccc----------------cc-C---CCCCHH-----------------------HHHHHHhcCcccCCCCCCCCC
Q 004766 606 IGHAWVS----------------DF-G---CSEEEE-----------------------EFYWLIKYSPLHNVRRPWEQN 642 (732)
Q Consensus 606 ~~~~~~~----------------~~-g---~p~~~~-----------------------~~~~~~~~sp~~~~~~~~~~~ 642 (732)
....|.. .+ . .+.... .+..+...+....+.+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----- 236 (315)
T 4f0j_A 162 SVDDWYRRDLQTSAEGIRQYQQATYYAGEWRPEFDRWVQMQAGMYRGKGRESVAWNSALTYDMIFTQPVVYELDR----- 236 (315)
T ss_dssp CHHHHHHHHTTCCHHHHHHHHHHHTSTTCCCGGGHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHCCCGGGGGG-----
T ss_pred hhHHHHhhcccCChHHHHHHHHHHHhccccCCchHHHHHHHHHHhhccCcchhhHHHHHhcCccccchhhhhccc-----
Confidence 0000000 00 0 000000 0111112222233333
Q ss_pred CCCCCCCCeEEEEeeCCCCCCCchHH------------HHHHHHHHHhhcCCCCCCCCCCCEEEEEeCCCCCCCCCchHH
Q 004766 643 PDKPFQYPSTLLLTADHDDRVVPLHS------------LKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQK 710 (732)
Q Consensus 643 ~~~~~~~~p~Li~~g~~D~~v~~~~~------------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~ 710 (732)
+.+|+|+++|.+|..||..+. .+....+.+. ...+.+++++++||.......
T Consensus 237 -----~~~P~lii~G~~D~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~gH~~~~~~p- 300 (315)
T 4f0j_A 237 -----LQMPTLLLIGEKDNTAIGKDAAPAELKARLGNYAQLGKDAARR----------IPQATLVEFPDLGHTPQIQAP- 300 (315)
T ss_dssp -----CCSCEEEEEETTCCCCTTGGGSCHHHHTTSCCHHHHHHHHHHH----------STTEEEEEETTCCSCHHHHSH-
T ss_pred -----CCCCeEEEEecCCCcCccccccccccccccccchhhhhHHHhh----------cCCceEEEeCCCCcchhhhCH-
Confidence 789999999999999996554 5666666665 456799999999998643222
Q ss_pred HHHHHHHHHHHHHH
Q 004766 711 MIDEAADRYGFMAK 724 (732)
Q Consensus 711 ~~~~~~~~~~fl~~ 724 (732)
.+....+.+||.+
T Consensus 301 -~~~~~~i~~fl~~ 313 (315)
T 4f0j_A 301 -ERFHQALLEGLQT 313 (315)
T ss_dssp -HHHHHHHHHHHCC
T ss_pred -HHHHHHHHHHhcc
Confidence 2445566677643
|
| >1gkl_A Endo-1,4-beta-xylanase Y; hydrolase, esterase family 1, inactive mutant; HET: FER; 1.4A {Clostridium thermocellum} SCOP: c.69.1.2 PDB: 1wb4_A* 1wb5_A* 1wb6_A* 1gkk_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=2.7e-16 Score=161.67 Aligned_cols=206 Identities=10% Similarity=-0.033 Sum_probs=135.8
Q ss_pred eEEEEEEEccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCC---cC-hhHHHHHHhc----CcEEEEEcccC
Q 004766 450 HVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPS---FS-VSRTILMRHL----GAVFCIANIRG 521 (732)
Q Consensus 450 ~~~~~~~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~---~~-~~~~~~l~~~----G~~v~~~~~rG 521 (732)
.++.+.+.|.+| .++++++.|+++..++++|+|+++||+.+....+. .. ......|.++ |++|+++|.+|
T Consensus 40 ~~~~~~~~s~~~--~~~~~vy~P~~~~~~~~~Pvlv~lHG~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ivv~pd~~~ 117 (297)
T 1gkl_A 40 RIVKETYTGING--TKSLNVYLPYGYDPNKKYNIFYLMHGGGENENTIFSNDVKLQNILDHAIMNGELEPLIVVTPTFNG 117 (297)
T ss_dssp EEEEEEEEETTE--EEEEEEEECTTCCTTSCCEEEEEECCTTCCTTSTTSTTTCHHHHHHHHHHTTSSCCEEEEECCSCS
T ss_pred eEEEEEEEcCCC--EEEEEEEeCCCCCCCCCCCEEEEECCCCCCcchhhcccchHHHHHHHHHHcCCCCCEEEEEecCcC
Confidence 567788888765 89999999998765678999999999876543221 01 1223333335 59999999998
Q ss_pred CCCCchhHHhcccccCCccHHHHHHHHHHHHHHcC---------CCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEc
Q 004766 522 GGEYGEEWHKGGALAKKQNCFDDFISASEYLISAG---------YTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAH 592 (732)
Q Consensus 522 ~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~---------~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~ 592 (732)
+.+.+..|.. ...+|++..++...... ..|+++++|+|+||||++++.++.++|++|+++++.
T Consensus 118 ~~~~~~~~~~--------~~~~~l~~~i~~~~~~~~~~~~~~~i~~d~~~~~i~G~S~GG~~al~~a~~~p~~f~~~v~~ 189 (297)
T 1gkl_A 118 GNCTAQNFYQ--------EFRQNVIPFVESKYSTYAESTTPQGIAASRMHRGFGGFAMGGLTTWYVMVNCLDYVAYFMPL 189 (297)
T ss_dssp TTCCTTTHHH--------HHHHTHHHHHHHHSCSSCSSCSHHHHHTTGGGEEEEEETHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CccchHHHHH--------HHHHHHHHHHHHhCCccccccccccccCCccceEEEEECHHHHHHHHHHHhCchhhheeeEe
Confidence 6544333321 11234444333221110 037789999999999999999999999999999999
Q ss_pred CCcccccccccCCCCCccccccCCCCCHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHH
Q 004766 593 VGVMDMLRYHKFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLL 672 (732)
Q Consensus 593 ~p~~d~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~ 672 (732)
+|...+... +. ........+... ..++. ...++++.+|.+|.. +.++.+++
T Consensus 190 sg~~~~~~~-------------~~-~~~~~~~~~~~~---~~~~~----------~~~~l~~~~G~~D~~--~~~~~~l~ 240 (297)
T 1gkl_A 190 SGDYWYGNS-------------PQ-DKANSIAEAINR---SGLSK----------REYFVFAATGSEDIA--YANMNPQI 240 (297)
T ss_dssp SCCCCBSSS-------------HH-HHHHHHHHHHHH---HTCCT----------TSCEEEEEEETTCTT--HHHHHHHH
T ss_pred ccccccCCc-------------cc-hhhhHHHHHHhh---ccCCc----------CcEEEEEEeCCCccc--chhHHHHH
Confidence 997532110 00 000111111111 12222 235777889999976 45889999
Q ss_pred HHHHHhhcCCCCCCCCC----------CCEEEEEeCCCCCCC
Q 004766 673 ATMQYVLCTSLENSPQT----------NPIIGRIERKAGHGV 704 (732)
Q Consensus 673 ~~l~~~~~~~~~~~~~~----------~~~~~~~~~~~gH~~ 704 (732)
++|+++ | .++.+.+++++||.+
T Consensus 241 ~~L~~~----------g~~~~~~~~~~~~~~~~~~~g~gH~~ 272 (297)
T 1gkl_A 241 EAMKAL----------PHFDYTSDFSKGNFYFLVAPGATHWW 272 (297)
T ss_dssp HHHHTS----------TTCCBBSCTTTCCEEEEEETTCCSSH
T ss_pred HHHHHc----------CCccccccccCCceEEEECCCCCcCH
Confidence 999987 5 589999999999974
|
| >4f21_A Carboxylesterase/phospholipase family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.50A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.3e-16 Score=158.70 Aligned_cols=215 Identities=13% Similarity=0.105 Sum_probs=135.4
Q ss_pred ceEEEEEEEccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHh--cCcEEEEEcccCC----
Q 004766 449 FHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRH--LGAVFCIANIRGG---- 522 (732)
Q Consensus 449 ~~~~~~~~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~--~G~~v~~~~~rG~---- 522 (732)
+..+.+.+.+ ..+...++.|+. ...++||++||..+... .|.. +...+.. .++.+++|+.+-.
T Consensus 13 ~~~~~~~~~~----~~l~y~ii~P~~----~~~~~VI~LHG~G~~~~--dl~~-l~~~l~~~~~~~~~i~P~Ap~~~~~~ 81 (246)
T 4f21_A 13 LGTENLYFQS----NAMNYELMEPAK----QARFCVIWLHGLGADGH--DFVD-IVNYFDVSLDEIRFIFPHADIIPVTI 81 (246)
T ss_dssp --------------CCCCEEEECCSS----CCCEEEEEEEC--CCCC--CGGG-GGGGCCSCCTTEEEEEECGGGSCTTT
T ss_pred cccceEEEec----CCcCceEeCCCC----cCCeEEEEEcCCCCCHH--HHHH-HHHHhhhcCCCeEEEeCCCCcccccc
Confidence 3445556654 346677888864 35679999999654432 2221 1122221 3788899886422
Q ss_pred --CCCchhHHhcccccC-------CccHHHHHHHHHHHH----HHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEE
Q 004766 523 --GEYGEEWHKGGALAK-------KQNCFDDFISASEYL----ISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCA 589 (732)
Q Consensus 523 --g~~g~~~~~~~~~~~-------~~~~~~D~~~~~~~l----~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~ 589 (732)
+..|..|+....... ....+...++.++.+ .+. -++++||++.|+|+||.+++.++.++|+.|+++
T Consensus 82 ~~~~~~~~Wf~~~~~~~~~~~~~~d~~~i~~~~~~i~~li~~~~~~-gi~~~ri~l~GfSqGg~~a~~~~~~~~~~~a~~ 160 (246)
T 4f21_A 82 NMGMQMRAWYDIKSLDANSLNRVVDVEGINSSIAKVNKLIDSQVNQ-GIASENIILAGFSQGGIIATYTAITSQRKLGGI 160 (246)
T ss_dssp HHHHHHHSCTTCCCC---CGGGGSCCC-CHHHHHHHHHHHHHHHHC--CCGGGEEEEEETTTTHHHHHHHTTCSSCCCEE
T ss_pred CCCCCcccccccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHc-CCChhcEEEEEeCchHHHHHHHHHhCccccccc
Confidence 122455654321111 111223333333333 344 379999999999999999999999999999999
Q ss_pred EEcCCcccccccccCCCCCccccccCCCCCHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHH
Q 004766 590 LAHVGVMDMLRYHKFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSL 669 (732)
Q Consensus 590 v~~~p~~d~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~ 669 (732)
|+.+|.+..... +- ...++ . ...+|+|++||.+|++||+..+.
T Consensus 161 i~~sG~lp~~~~------------~~-----------~~~~~---~-----------~~~~Pvl~~HG~~D~vVp~~~~~ 203 (246)
T 4f21_A 161 MALSTYLPAWDN------------FK-----------GKITS---I-----------NKGLPILVCHGTDDQVLPEVLGH 203 (246)
T ss_dssp EEESCCCTTHHH------------HS-----------TTCCG---G-----------GTTCCEEEEEETTCSSSCHHHHH
T ss_pred eehhhccCcccc------------cc-----------ccccc---c-----------ccCCchhhcccCCCCccCHHHHH
Confidence 998885421100 00 00000 0 13579999999999999999999
Q ss_pred HHHHHHHHhhcCCCCCCCCCCCEEEEEeCCCCCCCCCchHHHHHHHHHHHHHHHHHhCC
Q 004766 670 KLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLGA 728 (732)
Q Consensus 670 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~ 728 (732)
+.++.|+++ |.++++++|++.||.+.. ++..++.+||.+.|.+
T Consensus 204 ~~~~~L~~~----------g~~v~~~~y~g~gH~i~~------~~l~~~~~fL~k~l~l 246 (246)
T 4f21_A 204 DLSDKLKVS----------GFANEYKHYVGMQHSVCM------EEIKDISNFIAKTFKI 246 (246)
T ss_dssp HHHHHHHTT----------TCCEEEEEESSCCSSCCH------HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHC----------CCCeEEEEECCCCCccCH------HHHHHHHHHHHHHhCC
Confidence 999999988 999999999999998752 3456788999998863
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=6.5e-16 Score=179.45 Aligned_cols=297 Identities=14% Similarity=0.089 Sum_probs=188.3
Q ss_pred CCCCcEEeCCEEEEEEEcCCCCeeEEEEEeCCCCCc--eEEeCCCCc----CCC-CC-----EEEEeEEECCCCcEEEEE
Q 004766 82 RYDAPFKRGNKYFYFHNTGLQPQSVLYVQDSLDAKA--KVLLDPNTL----SDD-GT-----AALIKVSVSEDAKYLAYA 149 (732)
Q Consensus 82 ~~~~p~~~g~~~~~~~~~~~~~~~~l~~r~~~~~~~--~~l~D~~~l----~~~-~~-----~~~~~~~~SPDG~~la~~ 149 (732)
.+..+.+.|+.++|...+ . | +.+..+++. ++|++.+.+ +.. +. ..+..++|||| ++++|+
T Consensus 27 ~~~~~~w~g~~~~~~~~~-----~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~ 98 (706)
T 2z3z_A 27 YVVGLQWMGDNYVFIEGD-----D-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLF 98 (706)
T ss_dssp -CTTCEEETTEEEEEETT-----E-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEE
T ss_pred cCCCCcCcCCeEEEEeCC-----c-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEE
Confidence 445566667776665422 1 4 555556777 788887543 111 11 34678999999 889988
Q ss_pred EeccCCceEEEEEEECCCCceecccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCCcccEEEEEECCC--
Q 004766 150 LSYSGSDWATIKLMRIEDQIVEADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGT-- 227 (732)
Q Consensus 150 ~~~~G~e~~~i~v~dl~~g~~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt-- 227 (732)
.+ .+|++||+.+|+.............++|||||+.|+|+.. ..|+++++.+
T Consensus 99 ~~------~~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG~~la~~~~--------------------~~i~v~~~~~~~ 152 (706)
T 2z3z_A 99 TQ------GGLVGFDMLARKVTYLFDTNEETASLDFSPVGDRVAYVRN--------------------HNLYIARGGKLG 152 (706)
T ss_dssp ET------TEEEEEETTTTEEEEEECCTTCCTTCEECTTSSEEEEEET--------------------TEEEEEECBCTT
T ss_pred EC------CEEEEEECCCCceEEccCCcccccCCcCCCCCCEEEEEEC--------------------CeEEEEecCccc
Confidence 64 3899999999986543322223478999999999999731 3699999987
Q ss_pred ---CCCCCeEEEecCCCC------------eeEEEeEEecCCcEEEEEEecCC---------------------------
Q 004766 228 ---KQSEDILCWKDPEHP------------KYIFSGHVTEDGQYLVMCIEENC--------------------------- 265 (732)
Q Consensus 228 ---~~~~~~~v~~~~~~~------------~~~~~~~~SpDg~~l~~~~~~~~--------------------------- 265 (732)
+... .+....... .....+.|||||++|++.+.+..
T Consensus 153 ~~~g~~~--~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~ 230 (706)
T 2z3z_A 153 EGMSRAI--AVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGT 230 (706)
T ss_dssp SCCCCCE--ESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTS
T ss_pred ccCCCcE--EeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCC
Confidence 5432 121111110 01247899999999998873311
Q ss_pred -cceEEEEEEeCCCCCCCcccccccCCCCCcEEeeec--ccc--eEEEEEecCCeEEEEe-CCCCCCceEEEEeCCCCCC
Q 004766 266 -DPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDG--FDA--QYEVIANDDTVFTFLT-NKDAPKYKIIRVDLKEPND 339 (732)
Q Consensus 266 -~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~--~~~~~s~dg~~l~~~s-~~~~~~~~l~~~d~~~~~~ 339 (732)
.....|+++|++++. ...+... ... ....|+|||+.|++.+ ++......|+.+|++++..
T Consensus 231 ~~~~~~l~~~d~~~~~--------------~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~ 296 (706)
T 2z3z_A 231 PSHHVTVGIYHLATGK--------------TVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRF 296 (706)
T ss_dssp CCCEEEEEEEETTTTE--------------EEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCE
T ss_pred CCCeeEEEEEECCCCc--------------eEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCce
Confidence 124679999998743 1122211 111 1235999999998865 3344567899999998833
Q ss_pred ceEeccCCCCC---ceeEEEEec--CCEEEEEEecCCeeEEEEEeCCCCceeeecccccceeeE-eecccCCcEEEEEEe
Q 004766 340 WFEVIPEAERD---VLESATAVN--LNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNA-ISARREDSVVFISFT 413 (732)
Q Consensus 340 ~~~l~~~~~~~---~l~~~~~~~--~~~l~~~~~~~g~~~l~~~d~~~g~~~~~l~~~~g~v~~-~~~s~d~~~l~~~~s 413 (732)
.+.+..+.... .+..+.+++ ++.+++....++..+|+.++.+ |+.++.|+.+...+.. +.+++|++.++++.+
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~-~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~ 375 (706)
T 2z3z_A 297 VRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTT-GRLIRQVTKGEWEVTNFAGFDPKGTRLYFEST 375 (706)
T ss_dssp EEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETT-SCEEEECCCSSSCEEEEEEECTTSSEEEEEES
T ss_pred eeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECC-CCEEEecCCCCeEEEeeeEEcCCCCEEEEEec
Confidence 45554332221 235678888 7888888888888899999875 5555777655555544 688999998877654
Q ss_pred cCCCC--ceEEEEECCCCC
Q 004766 414 SFLIP--GIVYQCNLKTET 430 (732)
Q Consensus 414 s~~~p--~~~y~~d~~~~~ 430 (732)
. ..| ..+|.+|+.+++
T Consensus 376 ~-~~~~~~~l~~~d~~~~~ 393 (706)
T 2z3z_A 376 E-ASPLERHFYCIDIKGGK 393 (706)
T ss_dssp S-SCTTCBEEEEEETTCCC
T ss_pred C-CCCceEEEEEEEcCCCC
Confidence 4 333 489999988774
|
| >2h1i_A Carboxylesterase; structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics, MCSG, H; HET: MSE; 2.80A {Bacillus cereus} SCOP: c.69.1.14 | Back alignment and structure |
|---|
Probab=99.71 E-value=3.4e-16 Score=154.00 Aligned_cols=184 Identities=12% Similarity=0.052 Sum_probs=134.9
Q ss_pred CCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEE--cccCCCCCchhHHhcc-cccCC----ccHHHHHHHHHHH
Q 004766 479 GSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIA--NIRGGGEYGEEWHKGG-ALAKK----QNCFDDFISASEY 551 (732)
Q Consensus 479 ~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~--~~rG~g~~g~~~~~~~-~~~~~----~~~~~D~~~~~~~ 551 (732)
++.|+||++||+.+... .|. .+...|+ .||.|+++ |.||.|... |.... ..... ....+++.+.+++
T Consensus 36 ~~~~~vv~~HG~~~~~~--~~~-~~~~~l~-~g~~v~~~~~d~~g~g~s~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 109 (226)
T 2h1i_A 36 TSKPVLLLLHGTGGNEL--DLL-PLAEIVD-SEASVLSVRGNVLENGMPR--FFRRLAEGIFDEEDLIFRTKELNEFLDE 109 (226)
T ss_dssp TTSCEEEEECCTTCCTT--TTH-HHHHHHH-TTSCEEEECCSEEETTEEE--SSCEEETTEECHHHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEecCCCChh--HHH-HHHHHhc-cCceEEEecCcccCCcchh--hccccCccCcChhhHHHHHHHHHHHHHH
Confidence 47899999999876542 333 3456778 59999999 788876421 11110 00001 1224456666777
Q ss_pred HHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCcccccccccCCCCCccccccCCCCCHHHHHHHHhcCc
Q 004766 552 LISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHAWVSDFGCSEEEEEFYWLIKYSP 631 (732)
Q Consensus 552 l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~sp 631 (732)
+.++..+++++++++|+|+||++++.++.++|++++++|+.+|..+...
T Consensus 110 ~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~v~~~~~~~~~~------------------------------- 158 (226)
T 2h1i_A 110 AAKEYKFDRNNIVAIGYSNGANIAASLLFHYENALKGAVLHHPMVPRRG------------------------------- 158 (226)
T ss_dssp HHHHTTCCTTCEEEEEETHHHHHHHHHHHHCTTSCSEEEEESCCCSCSS-------------------------------
T ss_pred HHhhcCCCcccEEEEEEChHHHHHHHHHHhChhhhCEEEEeCCCCCcCc-------------------------------
Confidence 6776666889999999999999999999999999999999998754310
Q ss_pred ccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeCCCCCCCCCchHHH
Q 004766 632 LHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKM 711 (732)
Q Consensus 632 ~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~ 711 (732)
..... .+.+|+|+++|.+|..|++.++.++++++... +.++.+ +++++||.+.
T Consensus 159 -~~~~~---------~~~~p~l~~~G~~D~~~~~~~~~~~~~~l~~~----------~~~~~~-~~~~~gH~~~------ 211 (226)
T 2h1i_A 159 -MQLAN---------LAGKSVFIAAGTNDPICSSAESEELKVLLENA----------NANVTM-HWENRGHQLT------ 211 (226)
T ss_dssp -CCCCC---------CTTCEEEEEEESSCSSSCHHHHHHHHHHHHTT----------TCEEEE-EEESSTTSCC------
T ss_pred -ccccc---------ccCCcEEEEeCCCCCcCCHHHHHHHHHHHHhc----------CCeEEE-EeCCCCCCCC------
Confidence 01111 15689999999999999999999999999976 778888 9999999884
Q ss_pred HHHHHHHHHHHHHHh
Q 004766 712 IDEAADRYGFMAKML 726 (732)
Q Consensus 712 ~~~~~~~~~fl~~~l 726 (732)
.+....+.+||.++|
T Consensus 212 ~~~~~~~~~~l~~~l 226 (226)
T 2h1i_A 212 MGEVEKAKEWYDKAF 226 (226)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhC
Confidence 234456788888764
|
| >4fle_A Esterase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein, rossmann fold, HY; 2.10A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.9e-17 Score=158.91 Aligned_cols=189 Identities=13% Similarity=-0.001 Sum_probs=119.9
Q ss_pred ccEEEEEcCCCCccCCCCcC-hhHHHHHHhc--CcEEEEEcccCCCCCchhHHhcccccCCccHHHHHHHHHHHHHHcCC
Q 004766 481 HPCLLYGYGGFNISVTPSFS-VSRTILMRHL--GAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGY 557 (732)
Q Consensus 481 ~P~vv~~hG~~~~~~~~~~~-~~~~~~l~~~--G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~ 557 (732)
.|+|||+||..++.. ++. ..+..++.++ ||.|+++|++|.|+ |..+.++.+++.
T Consensus 2 mptIl~lHGf~ss~~--s~k~~~l~~~~~~~~~~~~v~~pdl~~~g~-------------------~~~~~l~~~~~~-- 58 (202)
T 4fle_A 2 MSTLLYIHGFNSSPS--SAKATTFKSWLQQHHPHIEMQIPQLPPYPA-------------------EAAEMLESIVMD-- 58 (202)
T ss_dssp -CEEEEECCTTCCTT--CHHHHHHHHHHHHHCTTSEEECCCCCSSHH-------------------HHHHHHHHHHHH--
T ss_pred CcEEEEeCCCCCCCC--ccHHHHHHHHHHHcCCCcEEEEeCCCCCHH-------------------HHHHHHHHHHHh--
Confidence 389999999544322 221 1234556555 49999999998651 233334444433
Q ss_pred CCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCcccccccccCCCCCccccccCCC--CCHHHHHHHHhcCcccCC
Q 004766 558 TQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHAWVSDFGCS--EEEEEFYWLIKYSPLHNV 635 (732)
Q Consensus 558 ~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~~~~~~~g~p--~~~~~~~~~~~~sp~~~~ 635 (732)
..+++|+|+|+|+||++++.++.++|+...+++...+..+......... .....+.+ .......... +....+
T Consensus 59 ~~~~~i~l~G~SmGG~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~--~~~~~~ 133 (202)
T 4fle_A 59 KAGQSIGIVGSSLGGYFATWLSQRFSIPAVVVNPAVRPFELLSDYLGEN---QNPYTGQKYVLESRHIYDLK--AMQIEK 133 (202)
T ss_dssp HTTSCEEEEEETHHHHHHHHHHHHTTCCEEEESCCSSHHHHGGGGCEEE---ECTTTCCEEEECHHHHHHHH--TTCCSS
T ss_pred cCCCcEEEEEEChhhHHHHHHHHHhcccchheeeccchHHHHHHhhhhh---ccccccccccchHHHHHHHH--hhhhhh
Confidence 2457999999999999999999999999888887777655443221100 00011111 1122222122 233333
Q ss_pred CCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeCCCCCCCCCchHHHHHHH
Q 004766 636 RRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEA 715 (732)
Q Consensus 636 ~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~ 715 (732)
.+ +.+|+||+||++|.+||+.++.+++. .+++.+++++||.+.... +..
T Consensus 134 ~~----------~~~P~LiihG~~D~~Vp~~~s~~l~~-----------------~~~l~i~~g~~H~~~~~~----~~~ 182 (202)
T 4fle_A 134 LE----------SPDLLWLLQQTGDEVLDYRQAVAYYT-----------------PCRQTVESGGNHAFVGFD----HYF 182 (202)
T ss_dssp CS----------CGGGEEEEEETTCSSSCHHHHHHHTT-----------------TSEEEEESSCCTTCTTGG----GGH
T ss_pred hc----------cCceEEEEEeCCCCCCCHHHHHHHhh-----------------CCEEEEECCCCcCCCCHH----HHH
Confidence 33 78999999999999999999887642 137888999999886532 234
Q ss_pred HHHHHHHHHHhCC
Q 004766 716 ADRYGFMAKMLGA 728 (732)
Q Consensus 716 ~~~~~fl~~~l~~ 728 (732)
..+.+||.-..|+
T Consensus 183 ~~I~~FL~~a~~l 195 (202)
T 4fle_A 183 SPIVTFLGLATAL 195 (202)
T ss_dssp HHHHHHHTCCCCT
T ss_pred HHHHHHHhhhhhc
Confidence 5678898654444
|
| >1k8q_A Triacylglycerol lipase, gastric; APHA beta hydrolase fold, hydrolase; HET: NAG BOG C11; 2.70A {Canis lupus familiaris} SCOP: c.69.1.6 PDB: 1hlg_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=9.5e-17 Score=170.93 Aligned_cols=148 Identities=15% Similarity=0.110 Sum_probs=102.1
Q ss_pred CceEEEEEEEccCCCeeEEEEEEEcCCCC--CCCCccEEEEEcCCCCccCCCCcC---hhHHHHHHhcCcEEEEEcccCC
Q 004766 448 EFHVHQVFVPSKDGSTKIPMFIVSKKNIK--LDGSHPCLLYGYGGFNISVTPSFS---VSRTILMRHLGAVFCIANIRGG 522 (732)
Q Consensus 448 ~~~~~~~~~~s~dG~~~i~~~~~~p~~~~--~~~~~P~vv~~hG~~~~~~~~~~~---~~~~~~l~~~G~~v~~~~~rG~ 522 (732)
.+..+.+.+++.|| .++.++.+.|.... ..++.|+||++||..+....+... ..+...|+++||.|+++|+||.
T Consensus 24 ~~~~~~~~~~~~dG-~~l~~~~~~~~~~~~~~~~~~~~vvl~HG~~~~~~~~~~~~~~~~~a~~l~~~G~~vi~~D~~G~ 102 (377)
T 1k8q_A 24 GYPAEEYEVVTEDG-YILGIDRIPYGRKNSENIGRRPVAFLQHGLLASATNWISNLPNNSLAFILADAGYDVWLGNSRGN 102 (377)
T ss_dssp TCCCEEEEEECTTS-EEEEEEEECSCSSCCTTTTTCCEEEEECCTTCCGGGGSSSCTTTCHHHHHHHTTCEEEECCCTTS
T ss_pred CCCceEEEeEcCCC-CEEEEEEecCCCCCccccCCCCeEEEECCCCCchhhhhcCCCcccHHHHHHHCCCCEEEecCCCC
Confidence 35567788889999 99999888665321 124789999999987765432211 1233456668999999999998
Q ss_pred CCCchhHH--hcccc--cCCc-cHHH-HHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCC---eeeEEEEcC
Q 004766 523 GEYGEEWH--KGGAL--AKKQ-NCFD-DFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPD---LFGCALAHV 593 (732)
Q Consensus 523 g~~g~~~~--~~~~~--~~~~-~~~~-D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~---~f~a~v~~~ 593 (732)
|.....-. ..... .... ...+ |+.++++++.+. .+.+++.++|+|+||.+++.++.++|+ +++++|+..
T Consensus 103 G~S~~~~~~~~~~~~~~~~~~~~~~~~D~~~~i~~~~~~--~~~~~~~lvG~S~Gg~ia~~~a~~~p~~~~~v~~lvl~~ 180 (377)
T 1k8q_A 103 TWARRNLYYSPDSVEFWAFSFDEMAKYDLPATIDFILKK--TGQDKLHYVGHSQGTTIGFIAFSTNPKLAKRIKTFYALA 180 (377)
T ss_dssp TTSCEESSSCTTSTTTTCCCHHHHHHTHHHHHHHHHHHH--HCCSCEEEEEETHHHHHHHHHHHHCHHHHTTEEEEEEES
T ss_pred CCCCCCCCCCCCcccccCccHHHHHhhhHHHHHHHHHHh--cCcCceEEEEechhhHHHHHHHhcCchhhhhhhEEEEeC
Confidence 86532100 00000 1111 1134 777888887765 334689999999999999999999998 899999988
Q ss_pred Ccccc
Q 004766 594 GVMDM 598 (732)
Q Consensus 594 p~~d~ 598 (732)
|...+
T Consensus 181 ~~~~~ 185 (377)
T 1k8q_A 181 PVATV 185 (377)
T ss_dssp CCSCC
T ss_pred Cchhc
Confidence 86543
|
| >3g8y_A SUSD/RAGB-associated esterase-like protein; structural genom joint center for structural genomics, JCSG; HET: MSE; 1.90A {Bacteroides vulgatus atcc 8482} | Back alignment and structure |
|---|
Probab=99.71 E-value=6.7e-17 Score=173.19 Aligned_cols=149 Identities=11% Similarity=0.004 Sum_probs=111.4
Q ss_pred CCceEEEEEEEccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCC------------CCcC---hhHHHHHHhcC
Q 004766 447 SEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVT------------PSFS---VSRTILMRHLG 511 (732)
Q Consensus 447 ~~~~~~~~~~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~------------~~~~---~~~~~~l~~~G 511 (732)
..+..+.+.+++.+| ..|+++++.|++. .++.|+||++||..+.... ..|. ..+...|+++|
T Consensus 83 ~g~~~e~v~~~~~~g-~~l~~~l~~P~~~--~~~~P~Vl~~HG~g~~~~~~~~~~~~~~~~~~~y~~~~~~~a~~la~~G 159 (391)
T 3g8y_A 83 EGYILEKWEFYPFPK-SVSTFLVLKPEHL--KGAVPGVLCIPGSGRTKEGLVGEPGICDKLTEDYNNPKVSMALNMVKEG 159 (391)
T ss_dssp TTEEEEEEEECCSTT-CCEEEEEEEETTC--CSCEEEEEEECCTTCCHHHHTTCCCSSGGGCCCTTSTTTCHHHHHHTTT
T ss_pred CCEEEEEEEEEcCCC-CEEEEEEEeCCCC--CCCCCEEEEeCCCCCCchhhccccccccccchhhcchHHHHHHHHHHCC
Confidence 457788899999999 9999999999864 4789999999997654321 0111 13456677799
Q ss_pred cEEEEEcccCCCCCchhHHh----------cc------cccCCccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHH
Q 004766 512 AVFCIANIRGGGEYGEEWHK----------GG------ALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLV 575 (732)
Q Consensus 512 ~~v~~~~~rG~g~~g~~~~~----------~~------~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~ 575 (732)
|+|+++|+||.|+.+..-.. .. ..........|+.+++++|.++..+|++||+|+|+|+||+++
T Consensus 160 ~~Vl~~D~rg~G~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~D~~~a~d~l~~~~~vd~~rI~v~G~S~GG~~a 239 (391)
T 3g8y_A 160 YVAVAVDNAAAGEASDLECYDKGWNYDYDVVSRFLLELGWSWLGYTSYLDMQVLNWMKAQSYIRKDRIVISGFSLGTEPM 239 (391)
T ss_dssp CEEEECCCTTSGGGCSSGGGTTTTSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTCTTEEEEEEEEEEEGGGHHHH
T ss_pred CEEEEecCCCccccCCcccccccccchHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccCCCCCeEEEEEEChhHHHH
Confidence 99999999998876532110 00 000011123799999999999999999999999999999999
Q ss_pred HHHHhhCCCeeeEEEEcCCccccc
Q 004766 576 GACINQRPDLFGCALAHVGVMDML 599 (732)
Q Consensus 576 ~~~~~~~p~~f~a~v~~~p~~d~~ 599 (732)
+.++.. +++++++|+..++.++.
T Consensus 240 l~~a~~-~~~i~a~v~~~~~~~~~ 262 (391)
T 3g8y_A 240 MVLGVL-DKDIYAFVYNDFLCQTQ 262 (391)
T ss_dssp HHHHHH-CTTCCEEEEESCBCCHH
T ss_pred HHHHHc-CCceeEEEEccCCCCcc
Confidence 998887 56789998888777663
|
| >3i2k_A Cocaine esterase; alpha/beta hydrolase, hydrolase; HET: DBC GOL; 1.51A {Rhodococcus SP} PDB: 3i2j_A* 3puh_A 3i2h_A* 3i2i_A* 3i2g_A* 3ida_A* 3i2f_A* 3pui_A 1ju3_A 1ju4_A 1l7q_A 1l7r_A | Back alignment and structure |
|---|
Probab=99.71 E-value=3.3e-17 Score=184.10 Aligned_cols=140 Identities=15% Similarity=0.088 Sum_probs=109.6
Q ss_pred eEEEEEEEccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCC-CCcChhHHHHHHhcCcEEEEEcccCCCCCchh
Q 004766 450 HVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVT-PSFSVSRTILMRHLGAVFCIANIRGGGEYGEE 528 (732)
Q Consensus 450 ~~~~~~~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~-~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~ 528 (732)
..+.+.+++.|| ++|.+.++.|++ .++.|+||+.||....... ..|.......|+++||+|+.+|+||.|+.+..
T Consensus 8 ~~~~v~i~~~DG-~~L~~~~~~P~~---~~~~P~vv~~~~~g~~~~~~~~y~~~~~~~la~~Gy~vv~~D~RG~G~S~g~ 83 (587)
T 3i2k_A 8 VASNVMVPMRDG-VRLAVDLYRPDA---DGPVPVLLVRNPYDKFDVFAWSTQSTNWLEFVRDGYAVVIQDTRGLFASEGE 83 (587)
T ss_dssp EEEEEEEECTTS-CEEEEEEEEECC---SSCEEEEEEEESSCTTCHHHHHTTTCCTHHHHHTTCEEEEEECTTSTTCCSC
T ss_pred EEEEEEEECCCC-CEEEEEEEECCC---CCCeeEEEEECCcCCCccccccchhhHHHHHHHCCCEEEEEcCCCCCCCCCc
Confidence 346688999999 999999999986 3578999998864332110 01221110445559999999999999987655
Q ss_pred HHhcccccCCccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCc-ccccc
Q 004766 529 WHKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGV-MDMLR 600 (732)
Q Consensus 529 ~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~-~d~~~ 600 (732)
+.. .....+|+.++++||.++.+.+ +||+++|+||||++++.++.++|+.++|+|+.+|. .|+..
T Consensus 84 ~~~------~~~~~~D~~~~i~~l~~~~~~~-~~v~l~G~S~GG~~a~~~a~~~~~~l~a~v~~~~~~~d~~~ 149 (587)
T 3i2k_A 84 FVP------HVDDEADAEDTLSWILEQAWCD-GNVGMFGVSYLGVTQWQAAVSGVGGLKAIAPSMASADLYRA 149 (587)
T ss_dssp CCT------TTTHHHHHHHHHHHHHHSTTEE-EEEEECEETHHHHHHHHHHTTCCTTEEEBCEESCCSCTCCC
T ss_pred ccc------ccchhHHHHHHHHHHHhCCCCC-CeEEEEeeCHHHHHHHHHHhhCCCccEEEEEeCCccccccc
Confidence 432 1357899999999999988776 89999999999999999999999999999999998 77654
|
| >2qru_A Uncharacterized protein; alpha/beta-hydrolase, structural GENO PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 1.65A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=99.71 E-value=7.1e-16 Score=156.83 Aligned_cols=230 Identities=12% Similarity=0.009 Sum_probs=141.4
Q ss_pred EEccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCC-CcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhccc
Q 004766 456 VPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTP-SFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGA 534 (732)
Q Consensus 456 ~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~-~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~ 534 (732)
++..+| .+ +.++.|++ ++.|+|||+|||....... .+......++.+.|+.|+.+|||+.++.
T Consensus 9 ~~~~~~-~~--~~~y~p~~----~~~p~iv~~HGGg~~~g~~~~~~~~~~~~l~~~g~~Vi~vdYrlaPe~--------- 72 (274)
T 2qru_A 9 QTLANG-AT--VTIYPTTT----EPTNYVVYLHGGGMIYGTKSDLPEELKELFTSNGYTVLALDYLLAPNT--------- 72 (274)
T ss_dssp EECTTS-CE--EEEECCSS----SSCEEEEEECCSTTTSCCGGGCCHHHHHHHHTTTEEEEEECCCCTTTS---------
T ss_pred ccccCC-ee--EEEEcCCC----CCCcEEEEEeCccccCCChhhchHHHHHHHHHCCCEEEEeCCCCCCCC---------
Confidence 344466 54 45666653 4679999999986433222 2333445667768999999999987652
Q ss_pred ccCCccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHh---hCCCeeeEEEEcCCccccccccc-----CC-
Q 004766 535 LAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACIN---QRPDLFGCALAHVGVMDMLRYHK-----FT- 605 (732)
Q Consensus 535 ~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~---~~p~~f~a~v~~~p~~d~~~~~~-----~~- 605 (732)
.-...++|+.++++||.++.. +++||+|+|+|+||.|++.++. ..|...+++|..+|+.|...... ..
T Consensus 73 --~~p~~~~D~~~al~~l~~~~~-~~~~i~l~G~SaGG~lA~~~a~~~~~~~~~~~~~vl~~~~~~~~~~~~~~~~~~~~ 149 (274)
T 2qru_A 73 --KIDHILRTLTETFQLLNEEII-QNQSFGLCGRSAGGYLMLQLTKQLQTLNLTPQFLVNFYGYTDLEFIKEPRKLLKQA 149 (274)
T ss_dssp --CHHHHHHHHHHHHHHHHHHTT-TTCCEEEEEETHHHHHHHHHHHHHHHTTCCCSCEEEESCCSCSGGGGSCCCSCSSC
T ss_pred --CCcHHHHHHHHHHHHHHhccc-cCCcEEEEEECHHHHHHHHHHHHHhcCCCCceEEEEEcccccccccCCchhhcccc
Confidence 123458999999999998743 2789999999999999999887 35778888998888777211000 00
Q ss_pred CCCcccccc-C-CC-----C-C-HHH---------HHHHHhcCcc-----cCCCCCCCCCCCCCCCCCeEEEEeeCCCCC
Q 004766 606 IGHAWVSDF-G-CS-----E-E-EEE---------FYWLIKYSPL-----HNVRRPWEQNPDKPFQYPSTLLLTADHDDR 662 (732)
Q Consensus 606 ~~~~~~~~~-g-~p-----~-~-~~~---------~~~~~~~sp~-----~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~ 662 (732)
....+...+ . .+ . . ... +..+...... ..+.. .+.... ||+||++|+.|..
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~l~~l-pP~li~~G~~D~~ 223 (274)
T 2qru_A 150 ISAKEIAAIDQTKPVWDDPFLSRYLLYHYSIQQALLPHFYGLPENGDWSAYALSD-----ETLKTF-PPCFSTASSSDEE 223 (274)
T ss_dssp CCSGGGTTSCCSSCCSCCTTCTTHHHHHHHHHTTCHHHHHTCCTTSCCGGGCCCH-----HHHHTS-CCEEEEEETTCSS
T ss_pred ccHHHHhhhcccCCCCCCccccchhhhhhhhhhcchhhccCcccccccccCCCCh-----hhhcCC-CCEEEEEecCCCC
Confidence 000000000 0 00 0 0 000 0000000000 00100 000014 9999999999999
Q ss_pred CCchHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeCCCCCCCCCc--hHHHHHHHHHHHHHHHH
Q 004766 663 VVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLP--TQKMIDEAADRYGFMAK 724 (732)
Q Consensus 663 v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~--~~~~~~~~~~~~~fl~~ 724 (732)
++..++.++.+++ .+++++++++++|++... .....+....+.+||.+
T Consensus 224 ~~~~~~~~l~~~~--------------~~~~l~~~~g~~H~~~~~~~~~~~~~~~~~~~~fl~~ 273 (274)
T 2qru_A 224 VPFRYSKKIGRTI--------------PESTFKAVYYLEHDFLKQTKDPSVITLFEQLDSWLKE 273 (274)
T ss_dssp SCTHHHHHHHHHS--------------TTCEEEEECSCCSCGGGGTTSHHHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHhC--------------CCcEEEEcCCCCcCCccCcCCHHHHHHHHHHHHHHhh
Confidence 9988877776553 346999999999998532 12223556777888864
|
| >1tht_A Thioesterase; 2.10A {Vibrio harveyi} SCOP: c.69.1.13 | Back alignment and structure |
|---|
Probab=99.71 E-value=6.9e-16 Score=159.32 Aligned_cols=236 Identities=14% Similarity=0.078 Sum_probs=143.0
Q ss_pred EEEEEEccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCC-CCCchhHH
Q 004766 452 HQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGG-GEYGEEWH 530 (732)
Q Consensus 452 ~~~~~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~-g~~g~~~~ 530 (732)
+...+++.|| .+|.++.+.|++. ..+..|+||++||..+... .|.. ....|+++||.|+++|+||+ |......
T Consensus 8 ~~~~i~~~dG-~~l~~~~~~p~~~-~~~~~~~VvllHG~g~~~~--~~~~-~~~~L~~~G~~Vi~~D~rGh~G~S~~~~- 81 (305)
T 1tht_A 8 IAHVLRVNNG-QELHVWETPPKEN-VPFKNNTILIASGFARRMD--HFAG-LAEYLSTNGFHVFRYDSLHHVGLSSGSI- 81 (305)
T ss_dssp EEEEEEETTT-EEEEEEEECCCTT-SCCCSCEEEEECTTCGGGG--GGHH-HHHHHHTTTCCEEEECCCBCC--------
T ss_pred eEEEEEcCCC-CEEEEEEecCccc-CCCCCCEEEEecCCccCch--HHHH-HHHHHHHCCCEEEEeeCCCCCCCCCCcc-
Confidence 4556778899 9999998877542 1235689999999766532 3443 45667668999999999997 6442211
Q ss_pred hcccccCC-ccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCcccccccc----cC-
Q 004766 531 KGGALAKK-QNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYH----KF- 604 (732)
Q Consensus 531 ~~~~~~~~-~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~----~~- 604 (732)
.... ..-.+|+.+++++|...+ .+++.++|+||||++++.++.+ | +++++|+..|+.++.... ..
T Consensus 82 ----~~~~~~~~~~D~~~~~~~l~~~~---~~~~~lvGhSmGG~iA~~~A~~-~-~v~~lvl~~~~~~~~~~~~~~~~~~ 152 (305)
T 1tht_A 82 ----DEFTMTTGKNSLCTVYHWLQTKG---TQNIGLIAASLSARVAYEVISD-L-ELSFLITAVGVVNLRDTLEKALGFD 152 (305)
T ss_dssp -----CCCHHHHHHHHHHHHHHHHHTT---CCCEEEEEETHHHHHHHHHTTT-S-CCSEEEEESCCSCHHHHHHHHHSSC
T ss_pred ----cceehHHHHHHHHHHHHHHHhCC---CCceEEEEECHHHHHHHHHhCc-c-CcCEEEEecCchhHHHHHHHHhhhh
Confidence 1111 122477888888887543 4689999999999999999888 7 788888877765432110 00
Q ss_pred --CCCCcccc---cc-CCCCCHHHH-HHHHhcC------cccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHH
Q 004766 605 --TIGHAWVS---DF-GCSEEEEEF-YWLIKYS------PLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKL 671 (732)
Q Consensus 605 --~~~~~~~~---~~-g~p~~~~~~-~~~~~~s------p~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~ 671 (732)
........ .+ +.......+ ....... +...+.+ +..|+||+||.+|..||+.++.++
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----------i~~PvLii~G~~D~~vp~~~~~~l 222 (305)
T 1tht_A 153 YLSLPIDELPNDLDFEGHKLGSEVFVRDCFEHHWDTLDSTLDKVAN----------TSVPLIAFTANNDDWVKQEEVYDM 222 (305)
T ss_dssp GGGSCGGGCCSEEEETTEEEEHHHHHHHHHHTTCSSHHHHHHHHTT----------CCSCEEEEEETTCTTSCHHHHHHH
T ss_pred hhhcchhhCcccccccccccCHHHHHHHHHhccccchhhHHHHHhh----------cCCCEEEEEeCCCCccCHHHHHHH
Confidence 00000000 00 100011111 1111110 1112233 788999999999999999988877
Q ss_pred HHHHHHhhcCCCCCCCCCCCEEEEEeCCCCCCCCCchHHHHHHHHHHHHHHHH
Q 004766 672 LATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAK 724 (732)
Q Consensus 672 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~ 724 (732)
++.+. ....++++++++||..........+.+..+..|...
T Consensus 223 ~~~i~------------~~~~~l~~i~~agH~~~e~p~~~~~fl~~~~~~~~~ 263 (305)
T 1tht_A 223 LAHIR------------TGHCKLYSLLGSSHDLGENLVVLRNFYQSVTKAAIA 263 (305)
T ss_dssp HTTCT------------TCCEEEEEETTCCSCTTSSHHHHHHHHHHHHHHHHH
T ss_pred HHhcC------------CCCcEEEEeCCCCCchhhCchHHHHHHHHHHHHHHH
Confidence 66543 234789999999999863332223344444445443
|
| >3nuz_A Putative acetyl xylan esterase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; 2.30A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.70 E-value=2e-17 Score=177.58 Aligned_cols=148 Identities=7% Similarity=-0.016 Sum_probs=110.9
Q ss_pred CCceEEEEEEEccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccC------------CCCcC---hhHHHHHHhcC
Q 004766 447 SEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISV------------TPSFS---VSRTILMRHLG 511 (732)
Q Consensus 447 ~~~~~~~~~~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~------------~~~~~---~~~~~~l~~~G 511 (732)
..+..+.+.+++.+| .+++++++.|++. .++.|+||++||+.+... ...|. ..+...|+++|
T Consensus 88 ~g~~~e~v~~~~~~g-~~l~~~l~~P~~~--~~~~P~Vv~~HG~g~~~~~~~~~~g~~~~~~~~y~~~~~~~a~~la~~G 164 (398)
T 3nuz_A 88 EGYRLEKWEFYPLPK-CVSTFLVLIPDNI--NKPVPAILCIPGSGGNKEGLAGEPGIAPKLNDRYKDPKLTQALNFVKEG 164 (398)
T ss_dssp SSEEEEEEEECCSTT-BCEEEEEEEESSC--CSCEEEEEEECCTTCCHHHHHTCCCSSSTTCCSTTCTTTCHHHHHHTTT
T ss_pred CCEEEEEEEEEcCCC-cEEEEEEEeCCCC--CCCccEEEEEcCCCCCcccccccccccccccccccchHHHHHHHHHHCC
Confidence 457889999999999 9999999999874 478999999999866432 11222 13556777799
Q ss_pred cEEEEEcccCCCCCchhHHhc----------------ccccCCccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHH
Q 004766 512 AVFCIANIRGGGEYGEEWHKG----------------GALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLV 575 (732)
Q Consensus 512 ~~v~~~~~rG~g~~g~~~~~~----------------~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~ 575 (732)
|+|+++|+||.|+.+...... ...........|+.++++||.+++.+|++||+|+|+|+||+++
T Consensus 165 y~Vl~~D~rG~G~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~D~~~ald~l~~~~~vd~~rI~v~G~S~GG~~a 244 (398)
T 3nuz_A 165 YIAVAVDNPAAGEASDLERYTLGSNYDYDVVSRYLLELGWSYLGYASYLDMQVLNWMKTQKHIRKDRIVVSGFSLGTEPM 244 (398)
T ss_dssp CEEEEECCTTSGGGCSSGGGTTTTSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTCSSEEEEEEEEEEEGGGHHHH
T ss_pred CEEEEecCCCCCccccccccccccccchhhhhhHHhhcCCCHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEEECHhHHHH
Confidence 999999999988765332100 0001111234799999999999999999999999999999999
Q ss_pred HHHHhhCCCeeeEEEEcCCcccc
Q 004766 576 GACINQRPDLFGCALAHVGVMDM 598 (732)
Q Consensus 576 ~~~~~~~p~~f~a~v~~~p~~d~ 598 (732)
+.++.. ++.++|+|+.+++..+
T Consensus 245 ~~~aa~-~~~i~a~v~~~~~~~~ 266 (398)
T 3nuz_A 245 MVLGTL-DTSIYAFVYNDFLCQT 266 (398)
T ss_dssp HHHHHH-CTTCCEEEEESCBCCH
T ss_pred HHHHhc-CCcEEEEEEecccccc
Confidence 988887 4577888886665543
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.70 E-value=4.1e-15 Score=159.12 Aligned_cols=308 Identities=11% Similarity=0.019 Sum_probs=183.8
Q ss_pred cEEeCCEEEEEEEcCCCCeeEEEEEeCCCCCceEEeCCCCcCCCCCEEEEeEEECCCCcEEEEEEeccCCceEEEEEEEC
Q 004766 86 PFKRGNKYFYFHNTGLQPQSVLYVQDSLDAKAKVLLDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRI 165 (732)
Q Consensus 86 p~~~g~~~~~~~~~~~~~~~~l~~r~~~~~~~~~l~D~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl 165 (732)
.+++|.+++|.....+. ..||+.+..+++.+.+++..... +..+.|||||++|+|+... .+|+++|+
T Consensus 43 ~SpDg~~l~~~~~~~g~--~~l~~~d~~~g~~~~lt~~~~~~------~~~~~~spdg~~l~~~~~~-----~~l~~~d~ 109 (388)
T 3pe7_A 43 FTRDGSKLLFGGAFDGP--WNYYLLDLNTQVATQLTEGRGDN------TFGGFLSPDDDALFYVKDG-----RNLMRVDL 109 (388)
T ss_dssp BCTTSCEEEEEECTTSS--CEEEEEETTTCEEEECCCSSCBC------SSSCEECTTSSEEEEEETT-----TEEEEEET
T ss_pred CCCCCCEEEEEEcCCCC--ceEEEEeCCCCceEEeeeCCCCC------ccceEEcCCCCEEEEEeCC-----CeEEEEEC
Confidence 34578888888763332 35888887666666666443211 1246799999999999732 37999999
Q ss_pred CCCceeccc-ccceee--eeEEEEeCCcEEEEEEecCCCCCCCCCCCC----cccCCcccEEEEEECCCCCCCCeEEEec
Q 004766 166 EDQIVEADA-LSWFKF--SSIAWTHDSKGFFYSRYPAPKEGKDMDAGT----ETDSNLYHEFYYHFLGTKQSEDILCWKD 238 (732)
Q Consensus 166 ~~g~~~~~~-~~~~~~--~~~~WspDg~~l~y~~~~~~~~~~~~~~~~----~~~~~~~~~v~~~~lgt~~~~~~~v~~~ 238 (732)
++|+..... ...... ....++|||+.++.......... ...... .........|+++++.++... .+...
T Consensus 110 ~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~--~l~~~ 186 (388)
T 3pe7_A 110 ATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWV-PLTDWKKFHEFYFTKPCCRLMRVDLKTGEST--VILQE 186 (388)
T ss_dssp TTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCC-CCCSHHHHHHHGGGCCCEEEEEEETTTCCEE--EEEEE
T ss_pred CCCcceeeeechhhcccccceeECCCCCeeccccccCcccc-cccccchhhhhhccCCcceEEEEECCCCceE--EeecC
Confidence 999854321 111111 22344899998887653321000 000000 000123367999999887432 34433
Q ss_pred CCCCeeEEEeEEec-CCcEEEEEEecCC-cceEEEEEEeCCCCCCCcccccccCCCCCcEEeeeccc---ceEEEEEecC
Q 004766 239 PEHPKYIFSGHVTE-DGQYLVMCIEENC-DPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFD---AQYEVIANDD 313 (732)
Q Consensus 239 ~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~-~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~s~dg 313 (732)
. .....+.||| ||++|++...... ....+||+++++++. .+.+..... .....|+|||
T Consensus 187 ~---~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~--------------~~~l~~~~~~~~~~~~~~spdg 249 (388)
T 3pe7_A 187 N---QWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTN--------------MRKVKTHAEGESCTHEFWVPDG 249 (388)
T ss_dssp S---SCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCC--------------CEESCCCCTTEEEEEEEECTTS
T ss_pred C---ccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCc--------------eEEeeeCCCCcccccceECCCC
Confidence 2 2456899999 9999999876421 114579999987642 233333221 1224699999
Q ss_pred CeEEEEeCCCCC-CceEEEEeCCCCCCceEeccCCCCCc----eeEEEEecC-CEEEEEEec------CCeeEEEEEeCC
Q 004766 314 TVFTFLTNKDAP-KYKIIRVDLKEPNDWFEVIPEAERDV----LESATAVNL-NQMIVSYLS------DVKYVLQIRDLK 381 (732)
Q Consensus 314 ~~l~~~s~~~~~-~~~l~~~d~~~~~~~~~l~~~~~~~~----l~~~~~~~~-~~l~~~~~~------~g~~~l~~~d~~ 381 (732)
+.|+|.++..+. ...|+++|+++++ .+.+........ ..+..|+++ +.|++...+ .+...|+++|++
T Consensus 250 ~~l~~~~~~~~~~~~~l~~~d~~~g~-~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~ 328 (388)
T 3pe7_A 250 SALVYVSYLKGSPDRFIYSADPETLE-NRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMK 328 (388)
T ss_dssp SCEEEEEEETTCCCEEEEEECTTTCC-EEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETT
T ss_pred CEEEEEecCCCCCcceEEEEecCCCc-eEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEecc
Confidence 999888876432 3469999999886 344433221000 111245554 456655433 556789999998
Q ss_pred CCceeeecccccc-----------eeeEeecccCCcEEEEEEecCCCCceEEEEECCCC
Q 004766 382 NGSLLHQLPIEIG-----------SVNAISARREDSVVFISFTSFLIPGIVYQCNLKTE 429 (732)
Q Consensus 382 ~g~~~~~l~~~~g-----------~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~ 429 (732)
+|+. +.|+.+.+ .+..+.+++||+.+++.... .....+|.+++..+
T Consensus 329 ~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~-~g~~~l~~~~l~~~ 385 (388)
T 3pe7_A 329 NGTQ-HRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDV-HGKPALYLATLPES 385 (388)
T ss_dssp TTEE-EEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECT-TSSCEEEEEECCGG
T ss_pred CCce-EEeccccCcccccccccccCCCCccCCCCCCEEEEEecC-CCceeEEEEECChh
Confidence 7665 66664433 34567789999988876544 45678999998754
|
| >3h2g_A Esterase; xanthomonas oryzae PV. oryzae, cell WALL degrading enzyme, RICE, virulence, innate immune responses, pathogenesis; 1.86A {Xanthomonas oryzae PV} PDB: 3h2j_A 3h2k_A* 3h2h_A 3h2i_A | Back alignment and structure |
|---|
Probab=99.70 E-value=5.6e-16 Score=166.67 Aligned_cols=150 Identities=15% Similarity=0.100 Sum_probs=101.0
Q ss_pred ceEEEEEEEccC--C-CeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCC---------CCcChhHHHHHHhcCcEEEE
Q 004766 449 FHVHQVFVPSKD--G-STKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVT---------PSFSVSRTILMRHLGAVFCI 516 (732)
Q Consensus 449 ~~~~~~~~~s~d--G-~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~---------~~~~~~~~~~l~~~G~~v~~ 516 (732)
....++.|.+.+ | ++.+.++++.|++....++.|+||++||+.+.... ..|.. +...|.++||+|++
T Consensus 44 v~~~~i~y~t~~~~g~~~~~~g~l~~P~~~~~~~~~P~vv~~HG~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~G~~V~~ 122 (397)
T 3h2g_A 44 VRVAEFTYATIGVEGEPATASGVLLIPGGERCSGPYPLLGWGHPTEALRAQEQAKEIRDAKGDDP-LVTRLASQGYVVVG 122 (397)
T ss_dssp EEEEEEEEEEECTTSCEEEEEEEEEEEECTTCCSCEEEEEEECCCCCBTTCCHHHHHHHTTTCSH-HHHTTGGGTCEEEE
T ss_pred eEEEEEEEEecCCCCCeEEEEEEEEeCCCCCCCCCCcEEEEeCCCcCCCCcccccccccccchHH-HHHHHHHCCCEEEE
Confidence 456677776654 3 24688999999876556789999999998876432 12333 34445559999999
Q ss_pred EcccCCCCCchhHHhcccccCCccHHHHHHHHHHHHHHc-CCCCCCcEEEEecChhHHHHHHHHh-hCC----C-eeeEE
Q 004766 517 ANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISA-GYTQSRKLCIEGGSNGGLLVGACIN-QRP----D-LFGCA 589 (732)
Q Consensus 517 ~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~-~~~d~~~i~i~G~S~GG~l~~~~~~-~~p----~-~f~a~ 589 (732)
+|+||.|+.+...+...........+.|.+.++..+.++ ++.++++|+++|+|+||+++++++. ..+ + .+.++
T Consensus 123 ~D~~G~G~s~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~~~~~~~ 202 (397)
T 3h2g_A 123 SDYLGLGKSNYAYHPYLHSASEASATIDAMRAARSVLQHLKTPLSGKVMLSGYSQGGHTAMATQREIEAHLSKEFHLVAS 202 (397)
T ss_dssp ECCTTSTTCCCSSCCTTCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEEEETHHHHHHHHHHHHHHHHCTTTSEEEEE
T ss_pred ecCCCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEECHHHHHHHHHHHHhhhhcCcCcceEEE
Confidence 999999875321111000000123456666666666544 6667889999999999999988763 222 2 57888
Q ss_pred EEcCCccccc
Q 004766 590 LAHVGVMDML 599 (732)
Q Consensus 590 v~~~p~~d~~ 599 (732)
++..+..|+.
T Consensus 203 ~~~~~~~~l~ 212 (397)
T 3h2g_A 203 APISGPYALE 212 (397)
T ss_dssp EEESCCSSHH
T ss_pred ecccccccHH
Confidence 8888877764
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.6e-15 Score=176.51 Aligned_cols=281 Identities=10% Similarity=0.034 Sum_probs=174.5
Q ss_pred EEEEeCCCCCceEEeCCCCcCCCCCEEEEeEEECCCCcEEEEEEeccC----CceEEEEEEECCCCce---eccccccee
Q 004766 107 LYVQDSLDAKAKVLLDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSG----SDWATIKLMRIEDQIV---EADALSWFK 179 (732)
Q Consensus 107 l~~r~~~~~~~~~l~D~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G----~e~~~i~v~dl~~g~~---~~~~~~~~~ 179 (732)
|++.+..+++.+.+++...... ..+..++|||||++|||+.+.++ +...+|++||+++|+. .+.. . .
T Consensus 38 i~~~~~~~g~~~~~~~~~~~~~---~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l~-~--~ 111 (719)
T 1z68_A 38 IVLYNIETGQSYTILSNRTMKS---VNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNELP-R--P 111 (719)
T ss_dssp EEEEESSSCCEEEEECHHHHHT---TTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCC-S--S
T ss_pred EEEEEcCCCcEEEEEccccccc---cceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceecC-c--c
Confidence 7777766677778887643310 01348899999999999986543 2347999999999987 3222 2 2
Q ss_pred eeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCCcccEEEEEECCCCCCCCeEEEecCCCC----------------e
Q 004766 180 FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHP----------------K 243 (732)
Q Consensus 180 ~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~----------------~ 243 (732)
...++|||||+.|+|++. ..|+++++.++... .+....... .
T Consensus 112 ~~~~~~SPDG~~la~~~~--------------------~~i~~~~~~~g~~~--~l~~~~~~~~v~~g~~~~v~~ee~~~ 169 (719)
T 1z68_A 112 IQYLCWSPVGSKLAYVYQ--------------------NNIYLKQRPGDPPF--QITFNGRENKIFNGIPDWVYEEEMLA 169 (719)
T ss_dssp BCCEEECSSTTCEEEEET--------------------TEEEEESSTTSCCE--ECCCCCBTTTEEESSCCHHHHHHTTC
T ss_pred cccceECCCCCEEEEEEC--------------------CeEEEEeCCCCCcE--EEecCCCcCCeEcccccceeeeeccc
Confidence 478999999999999852 26999998776432 121111000 0
Q ss_pred eEEEeEEecCCcEEEEEEecCCc-----------------------------ceEEEEEEeCCCCCCCcccccccCCCCC
Q 004766 244 YIFSGHVTEDGQYLVMCIEENCD-----------------------------PVNKVYYCDLSALPEGLEGFKKRDGLLP 294 (732)
Q Consensus 244 ~~~~~~~SpDg~~l~~~~~~~~~-----------------------------~~~~l~~~d~~~~~~~~~~~~~~~~~~~ 294 (732)
....++|||||++|++.+.+... ....|+++|++++... .
T Consensus 170 ~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~-----------~ 238 (719)
T 1z68_A 170 TKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYV-----------G 238 (719)
T ss_dssp SSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHH-----------C
T ss_pred CcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCcc-----------c
Confidence 01368999999999998765321 2347899998874210 0
Q ss_pred cEEeee-----ccc--ceEEEEEecCCeEEEEeCCCCCCceEEEEe----CCCCCCceEecc---CCCCCcee-----EE
Q 004766 295 FVKLID-----GFD--AQYEVIANDDTVFTFLTNKDAPKYKIIRVD----LKEPNDWFEVIP---EAERDVLE-----SA 355 (732)
Q Consensus 295 ~~~l~~-----~~~--~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d----~~~~~~~~~l~~---~~~~~~l~-----~~ 355 (732)
...+.. +.. .....|||||+.++...++.....+|+.+| +++++ ...++. +.....+. .+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~ 317 (719)
T 1z68_A 239 PQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWD-CPKTQEHIEESRTGWAGGFFVSTP 317 (719)
T ss_dssp CEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEE-CCGGGEEEEECSSSCSSSSSCCCC
T ss_pred eeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCc-eEEEEecccccCCceEccccCCcc
Confidence 011110 111 112359999654444445555567899999 77665 333442 22123333 67
Q ss_pred EEecCC-EEEE-EEecCCeeEEEEEeCCCCceeeecccccceeeEeecccCCcEEEEEEec---CCCCceEEEEECCCC
Q 004766 356 TAVNLN-QMIV-SYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTS---FLIPGIVYQCNLKTE 429 (732)
Q Consensus 356 ~~~~~~-~l~~-~~~~~g~~~l~~~d~~~g~~~~~l~~~~g~v~~~~~s~d~~~l~~~~ss---~~~p~~~y~~d~~~~ 429 (732)
.|++++ .+++ ....++..+|+++++++++. +.|+.+...+..+..+ +++.++++.+. ...-..+|.+++.++
T Consensus 318 ~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~-~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g 394 (719)
T 1z68_A 318 VFSYDAISYYKIFSDKDGYKHIHYIKDTVENA-IQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSY 394 (719)
T ss_dssp EECTTSSCEEEEEECTTSCEEEEEESSCSTTC-EECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSS
T ss_pred EECCCCCeEEEEEEccCCceEEEEEECCCCce-EecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCC
Confidence 788764 4544 56677888999999986664 6676544445555555 88888776643 123357888887555
|
| >3d59_A Platelet-activating factor acetylhydrolase; secreted protein, alpha/beta-hydrolase-fold, LDL-bound, lipoprotein associated phospholipase A2, LP-PLA2; 1.50A {Homo sapiens} PDB: 3d5e_A 3f97_A* 3f98_A 3f9c_A* 3f96_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=3.8e-16 Score=167.09 Aligned_cols=207 Identities=14% Similarity=0.110 Sum_probs=137.0
Q ss_pred eeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCch--------------h
Q 004766 463 TKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGE--------------E 528 (732)
Q Consensus 463 ~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~--------------~ 528 (732)
..+|..+..|.. .+++.|+||++||+.+... .|. .+...|+++||+|+++|+||+|.... .
T Consensus 82 ~~~p~~~~~P~~--~~~~~P~Vv~~HG~~~~~~--~~~-~~a~~La~~Gy~V~~~d~~g~g~s~~~~~~~~~~~~~~~~~ 156 (383)
T 3d59_A 82 MTTPANWNSPLR--PGEKYPLVVFSHGLGAFRT--LYS-AIGIDLASHGFIVAAVEHRDRSASATYYFKDQSAAEIGDKS 156 (383)
T ss_dssp CEESSEETCCBC--CSSCEEEEEEECCTTCCTT--TTH-HHHHHHHHTTCEEEEECCCSSCSSEEEECSSHHHHHHTCCE
T ss_pred eeeccccCCCcc--cCCCCCEEEEcCCCCCCch--HHH-HHHHHHHhCceEEEEeccCCCCccceeecCCccccccCCce
Confidence 667666554433 2468999999999877643 333 34566666999999999999875321 1
Q ss_pred HHhc----cc------ccCCccHHHHHHHHHHHHHH--------------------cCCCCCCcEEEEecChhHHHHHHH
Q 004766 529 WHKG----GA------LAKKQNCFDDFISASEYLIS--------------------AGYTQSRKLCIEGGSNGGLLVGAC 578 (732)
Q Consensus 529 ~~~~----~~------~~~~~~~~~D~~~~~~~l~~--------------------~~~~d~~~i~i~G~S~GG~l~~~~ 578 (732)
|... +. ...-....+|+.+++++|.+ .+.+|++||+++|+|+||.+++.+
T Consensus 157 ~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~~~~~~~~~~~~d~~~~~~~~d~~~i~l~G~S~GG~~a~~~ 236 (383)
T 3d59_A 157 WLYLRTLKQEEETHIRNEQVRQRAKECSQALSLILDIDHGKPVKNALDLKFDMEQLKDSIDREKIAVIGHSFGGATVIQT 236 (383)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSCCSCCGGGGTTCEEEEEEEEEEETHHHHHHHHH
T ss_pred eeeccccCcccchhhhHHHHHHHHHHHHHHHHHHHHhhcCCccccccccccchhhhhccccccceeEEEEChhHHHHHHH
Confidence 1000 00 00001125788999999876 456788999999999999999999
Q ss_pred HhhCCCeeeEEEEcCCcccccccccCCCCCccccccCCCCCHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEeeC
Q 004766 579 INQRPDLFGCALAHVGVMDMLRYHKFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTAD 658 (732)
Q Consensus 579 ~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~ 658 (732)
+.+.| +|+|+|+..|... |...+ .+ .+ +..|+|++||+
T Consensus 237 a~~~~-~v~a~v~~~~~~~-------------------p~~~~---------~~---~~----------i~~P~Lii~g~ 274 (383)
T 3d59_A 237 LSEDQ-RFRCGIALDAWMF-------------------PLGDE---------VY---SR----------IPQPLFFINSE 274 (383)
T ss_dssp HHHCT-TCCEEEEESCCCT-------------------TCCGG---------GG---GS----------CCSCEEEEEET
T ss_pred HhhCC-CccEEEEeCCccC-------------------CCchh---------hh---cc----------CCCCEEEEecc
Confidence 88755 6999998877321 10000 01 12 56799999999
Q ss_pred CCCCCCchHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeCCCCCCCCC--------------------chHHHHHHH-HH
Q 004766 659 HDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGL--------------------PTQKMIDEA-AD 717 (732)
Q Consensus 659 ~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~--------------------~~~~~~~~~-~~ 717 (732)
+|..+ ...+..++|... +.+.+++++++++|++.. ......+.+ +.
T Consensus 275 ~D~~~---~~~~~~~~l~~~----------~~~~~~~~~~g~~H~~~~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 341 (383)
T 3d59_A 275 YFQYP---ANIIKMKKCYSP----------DKERKMITIRGSVHQNFADFTFATGKIIGHMLKLKGDIDSNVAIDLSNKA 341 (383)
T ss_dssp TTCCH---HHHHHHHTTCCT----------TSCEEEEEETTCCGGGGSGGGGSSCHHHHHHTTSSCSSCHHHHHHHHHHH
T ss_pred cccch---hhHHHHHHHHhc----------CCceEEEEeCCCcCCCcccHhhhhhHHhhhhhcccCCcCHHHHHHHHHHH
Confidence 99743 223333444433 778999999999998621 122223333 46
Q ss_pred HHHHHHHHhCCC
Q 004766 718 RYGFMAKMLGAS 729 (732)
Q Consensus 718 ~~~fl~~~l~~~ 729 (732)
+.+||.++|+..
T Consensus 342 ~~~Fl~~~L~~~ 353 (383)
T 3d59_A 342 SLAFLQKHLGLH 353 (383)
T ss_dssp HHHHHHHHHTCC
T ss_pred HHHHHHHHcCCc
Confidence 899999999754
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.68 E-value=2.6e-14 Score=145.83 Aligned_cols=255 Identities=13% Similarity=0.056 Sum_probs=165.3
Q ss_pred eEEEEEeCCCCCceEEeCCCCcCCCCCEEEEeEEECCCCcEEEEEEeccCCceEEEEEEECCC-Cceeccccc--ceeee
Q 004766 105 SVLYVQDSLDAKAKVLLDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIED-QIVEADALS--WFKFS 181 (732)
Q Consensus 105 ~~l~~r~~~~~~~~~l~D~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~-g~~~~~~~~--~~~~~ 181 (732)
..|++.+..+++...++.... .+..++|||||++|++.. . ..|++||+++ ++....... .....
T Consensus 22 ~~i~~~d~~~~~~~~~~~~~~-------~v~~~~~spdg~~l~~~~--~----~~i~~~d~~~~~~~~~~~~~~~~~~~~ 88 (297)
T 2ojh_A 22 SSIEIFNIRTRKMRVVWQTPE-------LFEAPNWSPDGKYLLLNS--E----GLLYRLSLAGDPSPEKVDTGFATICNN 88 (297)
T ss_dssp EEEEEEETTTTEEEEEEEESS-------CCEEEEECTTSSEEEEEE--T----TEEEEEESSSCCSCEECCCTTCCCBCS
T ss_pred eeEEEEeCCCCceeeeccCCc-------ceEeeEECCCCCEEEEEc--C----CeEEEEeCCCCCCceEecccccccccc
Confidence 457776655555454444321 245899999999999874 2 2799999999 875432211 12346
Q ss_pred eEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEE
Q 004766 182 SIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCI 261 (732)
Q Consensus 182 ~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~ 261 (732)
.++|+|||+.|++..... ....+||.+++.++... .+ ... . ....+.|||||++|++..
T Consensus 89 ~~~~spdg~~l~~~~~~~---------------~~~~~l~~~~~~~~~~~--~~-~~~--~-~~~~~~~spdg~~l~~~~ 147 (297)
T 2ojh_A 89 DHGISPDGALYAISDKVE---------------FGKSAIYLLPSTGGTPR--LM-TKN--L-PSYWHGWSPDGKSFTYCG 147 (297)
T ss_dssp CCEECTTSSEEEEEECTT---------------TSSCEEEEEETTCCCCE--EC-CSS--S-SEEEEEECTTSSEEEEEE
T ss_pred ceEECCCCCEEEEEEeCC---------------CCcceEEEEECCCCceE--Ee-ecC--C-CccceEECCCCCEEEEEE
Confidence 799999999999987432 13457899988765421 22 111 1 245789999999999877
Q ss_pred ecCCcceEEEEEEeCCCCCCCcccccccCCCCCcEEeeeccc-ceEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCc
Q 004766 262 EENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFD-AQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDW 340 (732)
Q Consensus 262 ~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~ 340 (732)
.... ...||.+++.++. ...+..... .....|+|+|+.|++.+..++ ..+|+.+++.+.. .
T Consensus 148 ~~~~--~~~l~~~~~~~~~--------------~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~-~~~i~~~~~~~~~-~ 209 (297)
T 2ojh_A 148 IRDQ--VFDIYSMDIDSGV--------------ETRLTHGEGRNDGPDYSPDGRWIYFNSSRTG-QMQIWRVRVDGSS-V 209 (297)
T ss_dssp EETT--EEEEEEEETTTCC--------------EEECCCSSSCEEEEEECTTSSEEEEEECTTS-SCEEEEEETTSSC-E
T ss_pred CCCC--ceEEEEEECCCCc--------------ceEcccCCCccccceECCCCCEEEEEecCCC-CccEEEECCCCCC-c
Confidence 5443 5689988887642 223322221 122358999999988776443 5789999877665 4
Q ss_pred eEeccCCCCCceeEEEEecCC-EEEEEEecC--------CeeEEEEEeCCCCceeeecc---cccceeeEeecccCCcEE
Q 004766 341 FEVIPEAERDVLESATAVNLN-QMIVSYLSD--------VKYVLQIRDLKNGSLLHQLP---IEIGSVNAISARREDSVV 408 (732)
Q Consensus 341 ~~l~~~~~~~~l~~~~~~~~~-~l~~~~~~~--------g~~~l~~~d~~~g~~~~~l~---~~~g~v~~~~~s~d~~~l 408 (732)
..+..+. ..+..+.|++++ .|++..... +...|++||+++++. ..+. .+.+.+..+.++++++.+
T Consensus 210 ~~~~~~~--~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~-~~~~~~~~~~~~~~~~~~spdg~~l 286 (297)
T 2ojh_A 210 ERITDSA--YGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNV-ETLFDLFGGQGTMNSPNWSPDGDEF 286 (297)
T ss_dssp EECCCCS--EEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSC-EEEEEEEESTTTSCSCCBCTTSSEE
T ss_pred EEEecCC--cccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCc-eeeeccCCCCcccccceECCCCCEE
Confidence 5554433 456778888764 455555443 346899999987765 3332 224456677889999988
Q ss_pred EEEEec
Q 004766 409 FISFTS 414 (732)
Q Consensus 409 ~~~~ss 414 (732)
++....
T Consensus 287 ~~~~~~ 292 (297)
T 2ojh_A 287 AYVRYF 292 (297)
T ss_dssp EEEEEC
T ss_pred EEEEec
Confidence 776554
|
| >2qjw_A Uncharacterized protein XCC1541; putative hydrolase of the alpha/beta superfamily, structural genomics; HET: MSE TLA P6G; 1.35A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.68 E-value=5.4e-16 Score=146.06 Aligned_cols=173 Identities=12% Similarity=0.032 Sum_probs=122.1
Q ss_pred CCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCccHHHHHHHHHHHHHHcCCC
Q 004766 479 GSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYT 558 (732)
Q Consensus 479 ~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~ 558 (732)
++.|+||++||..+....+.+ ..+...|.++||.|+.+|+||.|.... ........+++.++++++.+..
T Consensus 2 ~~~~~vv~~HG~~~~~~~~~~-~~~~~~l~~~g~~v~~~d~~g~g~s~~-------~~~~~~~~~~~~~~~~~~~~~~-- 71 (176)
T 2qjw_A 2 MSRGHCILAHGFESGPDALKV-TALAEVAERLGWTHERPDFTDLDARRD-------LGQLGDVRGRLQRLLEIARAAT-- 71 (176)
T ss_dssp CSSCEEEEECCTTCCTTSHHH-HHHHHHHHHTTCEEECCCCHHHHTCGG-------GCTTCCHHHHHHHHHHHHHHHH--
T ss_pred CCCcEEEEEeCCCCCccHHHH-HHHHHHHHHCCCEEEEeCCCCCCCCCC-------CCCCCCHHHHHHHHHHHHHhcC--
Confidence 467999999998765322222 134566666899999999999765321 1112223445556677776653
Q ss_pred CCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCcccccccccCCCCCccccccCCCCCHHHHHHHHhcCcccCCCCC
Q 004766 559 QSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRP 638 (732)
Q Consensus 559 d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~sp~~~~~~~ 638 (732)
+.++++++|+|+||.++..++.++| ++++|+..|..+... + . . ...
T Consensus 72 ~~~~~~l~G~S~Gg~~a~~~a~~~~--~~~~v~~~~~~~~~~---------~-~-----~----------------~~~- 117 (176)
T 2qjw_A 72 EKGPVVLAGSSLGSYIAAQVSLQVP--TRALFLMVPPTKMGP---------L-P-----A----------------LDA- 117 (176)
T ss_dssp TTSCEEEEEETHHHHHHHHHHTTSC--CSEEEEESCCSCBTT---------B-C-----C----------------CCC-
T ss_pred CCCCEEEEEECHHHHHHHHHHHhcC--hhheEEECCcCCccc---------c-C-----c----------------ccc-
Confidence 4579999999999999999999988 899998888765421 1 0 0 222
Q ss_pred CCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeCCCCCCCCCchHHHHHHHHHH
Q 004766 639 WEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADR 718 (732)
Q Consensus 639 ~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~ 718 (732)
+.+|+|+++|.+|..||+.++.++++.+ . ++++++ ++||.+... ..+....+
T Consensus 118 ---------~~~P~l~i~g~~D~~~~~~~~~~~~~~~-~--------------~~~~~~-~~~H~~~~~---~~~~~~~i 169 (176)
T 2qjw_A 118 ---------AAVPISIVHAWHDELIPAADVIAWAQAR-S--------------ARLLLV-DDGHRLGAH---VQAASRAF 169 (176)
T ss_dssp ---------CSSCEEEEEETTCSSSCHHHHHHHHHHH-T--------------CEEEEE-SSCTTCTTC---HHHHHHHH
T ss_pred ---------cCCCEEEEEcCCCCccCHHHHHHHHHhC-C--------------ceEEEe-CCCcccccc---HHHHHHHH
Confidence 6789999999999999999999888776 2 367778 899998422 23455566
Q ss_pred HHHHH
Q 004766 719 YGFMA 723 (732)
Q Consensus 719 ~~fl~ 723 (732)
.+||.
T Consensus 170 ~~fl~ 174 (176)
T 2qjw_A 170 AELLQ 174 (176)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 67765
|
| >3c8d_A Enterochelin esterase; alpha-beta-alpha sandwich, IROD, iron aquisition, structural genomics, PSI-2, protein structure initiative; HET: CIT; 1.80A {Shigella flexneri 2a str} SCOP: b.1.18.20 c.69.1.2 PDB: 2b20_A 3c87_A* 3c8h_A 3mga_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=4.5e-16 Score=166.74 Aligned_cols=223 Identities=14% Similarity=0.088 Sum_probs=147.6
Q ss_pred eEEEEEEEcc-CCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcE----EEEEcccCCCC
Q 004766 450 HVHQVFVPSK-DGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAV----FCIANIRGGGE 524 (732)
Q Consensus 450 ~~~~~~~~s~-dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~----v~~~~~rG~g~ 524 (732)
.++.+.+.|. .| ..++++++.|++.. .+++|+|+++||+...... .+. .....|.++|++ |+++|++|++.
T Consensus 167 ~v~~~~~~S~~~g-~~~~~~vy~P~~~~-~~~~PvlvllHG~~~~~~~-~~~-~~~~~l~~~g~~~p~iVV~~d~~~~~~ 242 (403)
T 3c8d_A 167 PAKEIIWKSERLK-NSRRVWIFTTGDVT-AEERPLAVLLDGEFWAQSM-PVW-PVLTSLTHRQQLPPAVYVLIDAIDTTH 242 (403)
T ss_dssp CCEEEEEEETTTT-EEEEEEEEEC------CCCCEEEESSHHHHHHTS-CCH-HHHHHHHHTTSSCSCEEEEECCCSHHH
T ss_pred ceEEEEEEccccC-CcEEEEEEeCCCCC-CCCCCEEEEeCCHHHhhcC-cHH-HHHHHHHHcCCCCCeEEEEECCCCCcc
Confidence 4567777775 67 89999999998753 5789999999996432211 122 233444447875 99999986321
Q ss_pred CchhHHhcccccCCccHHHHHH--HHHHHHHHc-C-CCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCcccccc
Q 004766 525 YGEEWHKGGALAKKQNCFDDFI--SASEYLISA-G-YTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLR 600 (732)
Q Consensus 525 ~g~~~~~~~~~~~~~~~~~D~~--~~~~~l~~~-~-~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~ 600 (732)
.... . .....+.|++ +++.++.++ . ..|+++++|+|+||||++++.++.++|++|+++++.+|.+++..
T Consensus 243 r~~~-----~--~~~~~~~~~l~~el~~~i~~~~~~~~d~~~~~l~G~S~GG~~al~~a~~~p~~f~~~~~~sg~~~~~~ 315 (403)
T 3c8d_A 243 RAHE-----L--PCNADFWLAVQQELLPLVKVIAPFSDRADRTVVAGQSFGGLSALYAGLHWPERFGCVLSQSGSYWWPH 315 (403)
T ss_dssp HHHH-----S--SSCHHHHHHHHHTHHHHHHHHSCCCCCGGGCEEEEETHHHHHHHHHHHHCTTTCCEEEEESCCTTTTC
T ss_pred cccc-----C--CChHHHHHHHHHHHHHHHHHHCCCCCCCCceEEEEECHHHHHHHHHHHhCchhhcEEEEeccccccCC
Confidence 1111 0 1123455554 466676664 2 35889999999999999999999999999999999999875322
Q ss_pred cccCCCCCccccccCCCCCHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhc
Q 004766 601 YHKFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLC 680 (732)
Q Consensus 601 ~~~~~~~~~~~~~~g~p~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~ 680 (732)
. +++.+....+.+.. . .... ..+|++|.||..|+.+ +.++.+++++|+++
T Consensus 316 ~-------------~~~~~~~~~~~~~~-~---~~~~----------~~~~i~l~~G~~D~~~-~~~~~~l~~~L~~~-- 365 (403)
T 3c8d_A 316 R-------------GGQQEGVLLEKLKA-G---EVSA----------EGLRIVLEAGIREPMI-MRANQALYAQLHPI-- 365 (403)
T ss_dssp T-------------TSSSCCHHHHHHHT-T---SSCC----------CSCEEEEEEESSCHHH-HHHHHHHHHHTGGG--
T ss_pred C-------------CCCcHHHHHHHHHh-c---cccC----------CCceEEEEeeCCCchh-HHHHHHHHHHHHhC--
Confidence 1 11111112222222 1 1111 5689999999998754 67899999999988
Q ss_pred CCCCCCCCCCCEEEEEeCCCCCCCCCchHHHHHHHHHHHHHHHHHh
Q 004766 681 TSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKML 726 (732)
Q Consensus 681 ~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l 726 (732)
|.+++++++++ ||... .....+...+.||.+.+
T Consensus 366 --------G~~v~~~~~~G-gH~~~----~w~~~l~~~l~~l~~~~ 398 (403)
T 3c8d_A 366 --------KESIFWRQVDG-GHDAL----CWRGGLMQGLIDLWQPL 398 (403)
T ss_dssp --------TTSEEEEEESC-CSCHH----HHHHHHHHHHHHHHGGG
T ss_pred --------CCCEEEEEeCC-CCCHH----HHHHHHHHHHHHHhccc
Confidence 99999999998 69742 22355667778887654
|
| >2fx5_A Lipase; alpha-beta hydrolase; HET: TLA; 1.80A {Pseudomonas mendocina} | Back alignment and structure |
|---|
Probab=99.67 E-value=5.9e-16 Score=155.94 Aligned_cols=185 Identities=15% Similarity=0.142 Sum_probs=129.2
Q ss_pred EEEEEcCCCCC-CCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCccHHHHH
Q 004766 467 MFIVSKKNIKL-DGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDF 545 (732)
Q Consensus 467 ~~~~~p~~~~~-~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~ 545 (732)
+.+++|+.... +++.|+||++||+.+.. ..|. .+...|+++||.|+++|+||++ ...|+
T Consensus 34 ~~~~~p~~~~~~g~~~p~vv~~HG~~~~~--~~~~-~~~~~l~~~G~~v~~~d~~~s~-----------------~~~~~ 93 (258)
T 2fx5_A 34 CRIYRPRDLGQGGVRHPVILWGNGTGAGP--STYA-GLLSHWASHGFVVAAAETSNAG-----------------TGREM 93 (258)
T ss_dssp EEEEEESSTTGGGCCEEEEEEECCTTCCG--GGGH-HHHHHHHHHTCEEEEECCSCCT-----------------TSHHH
T ss_pred EEEEeCCCCcccCCCceEEEEECCCCCCc--hhHH-HHHHHHHhCCeEEEEecCCCCc-----------------cHHHH
Confidence 77788875321 23789999999987753 2333 3455566689999999999641 11455
Q ss_pred HHHHHHHHHc---------CCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCcccccccccCCCCCccccccCC
Q 004766 546 ISASEYLISA---------GYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHAWVSDFGC 616 (732)
Q Consensus 546 ~~~~~~l~~~---------~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~~~~~~~g~ 616 (732)
..+++++.+. ..++.++++++|+|+||++++.++ .+++++++|+..|.....
T Consensus 94 ~~~~~~l~~~~~~~~~~~~~~~~~~~i~l~G~S~GG~~a~~~a--~~~~v~~~v~~~~~~~~~----------------- 154 (258)
T 2fx5_A 94 LACLDYLVRENDTPYGTYSGKLNTGRVGTSGHSQGGGGSIMAG--QDTRVRTTAPIQPYTLGL----------------- 154 (258)
T ss_dssp HHHHHHHHHHHHSSSSTTTTTEEEEEEEEEEEEHHHHHHHHHT--TSTTCCEEEEEEECCSST-----------------
T ss_pred HHHHHHHHhcccccccccccccCccceEEEEEChHHHHHHHhc--cCcCeEEEEEecCccccc-----------------
Confidence 5566666542 345778999999999999998887 356889998876643210
Q ss_pred CCCHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchH-HHHHHHHHHHhhcCCCCCCCCCCCEEEE
Q 004766 617 SEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLH-SLKLLATMQYVLCTSLENSPQTNPIIGR 695 (732)
Q Consensus 617 p~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 695 (732)
+.. ...+.. +.+|+|++||++|..||+.. +.+++++ . +.+++++
T Consensus 155 ~~~------------~~~~~~----------i~~P~lii~G~~D~~~~~~~~~~~~~~~---~----------~~~~~~~ 199 (258)
T 2fx5_A 155 GHD------------SASQRR----------QQGPMFLMSGGGDTIAFPYLNAQPVYRR---A----------NVPVFWG 199 (258)
T ss_dssp TCC------------GGGGGC----------CSSCEEEEEETTCSSSCHHHHTHHHHHH---C----------SSCEEEE
T ss_pred ccc------------hhhhcc----------CCCCEEEEEcCCCcccCchhhHHHHHhc---c----------CCCeEEE
Confidence 000 011222 67899999999999999886 7776655 3 5678999
Q ss_pred EeCCCCCCCCCchHHHHHHHHHHHHHHHHHhC
Q 004766 696 IERKAGHGVGLPTQKMIDEAADRYGFMAKMLG 727 (732)
Q Consensus 696 ~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 727 (732)
+++++||+......+ .....+.+||.++|.
T Consensus 200 ~~~g~~H~~~~~~~~--~~~~~i~~fl~~~l~ 229 (258)
T 2fx5_A 200 ERRYVSHFEPVGSGG--AYRGPSTAWFRFQLM 229 (258)
T ss_dssp EESSCCTTSSTTTCG--GGHHHHHHHHHHHHH
T ss_pred EECCCCCccccchHH--HHHHHHHHHHHHHhc
Confidence 999999997653322 445668889987763
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.67 E-value=9.9e-15 Score=169.93 Aligned_cols=284 Identities=12% Similarity=0.087 Sum_probs=174.3
Q ss_pred EEEEeCCCCCceEEeCCCCcCCCCCEEEEeEEECCCCcEEEEEEeccCCc----eEEEEEEECCCCceecccccc---ee
Q 004766 107 LYVQDSLDAKAKVLLDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSGSD----WATIKLMRIEDQIVEADALSW---FK 179 (732)
Q Consensus 107 l~~r~~~~~~~~~l~D~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e----~~~i~v~dl~~g~~~~~~~~~---~~ 179 (732)
|++-+..+++...+++...... ..+..++|||||++|||..+..+.. ..+|++||+++|+........ ..
T Consensus 39 i~~~d~~~g~~~~~~~~~~~~~---~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~ 115 (723)
T 1xfd_A 39 VRLWNVETNTSTVLIEGKKIES---LRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAK 115 (723)
T ss_dssp EEEBCGGGCCCEEEECTTTTTT---TTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCC
T ss_pred EEEEECCCCcEEEEeccccccc---cccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCcccccc
Confidence 5555555566666676543210 1245899999999999997644321 258999999998853222111 11
Q ss_pred eeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCCcccEEEEEECCCCCCCCeEEEecCCCCe----------------
Q 004766 180 FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPK---------------- 243 (732)
Q Consensus 180 ~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~---------------- 243 (732)
...++|||||+.|+|++. ..||++++.++... .+........
T Consensus 116 ~~~~~~SPdG~~la~~~~--------------------~~i~~~~~~~g~~~--~~~~~~~~~~~~~g~~~~v~~ee~~~ 173 (723)
T 1xfd_A 116 LQYAGWGPKGQQLIFIFE--------------------NNIYYCAHVGKQAI--RVVSTGKEGVIYNGLSDWLYEEEILK 173 (723)
T ss_dssp CSBCCBCSSTTCEEEEET--------------------TEEEEESSSSSCCE--EEECCCBTTTEEEEECCHHHHHTTSS
T ss_pred ccccEECCCCCEEEEEEC--------------------CeEEEEECCCCceE--EEecCCCCCceECcccceeEEEEecc
Confidence 367999999999999862 36999998776432 3332211111
Q ss_pred eEEEeEEecCCcEEEEEEecCC-----------------------------cceEEEEEEeCCCCCCCcccccccCCCCC
Q 004766 244 YIFSGHVTEDGQYLVMCIEENC-----------------------------DPVNKVYYCDLSALPEGLEGFKKRDGLLP 294 (732)
Q Consensus 244 ~~~~~~~SpDg~~l~~~~~~~~-----------------------------~~~~~l~~~d~~~~~~~~~~~~~~~~~~~ 294 (732)
....++|||||++|++.+.+.. .....|+++|++++..
T Consensus 174 ~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~------------- 240 (723)
T 1xfd_A 174 THIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTH------------- 240 (723)
T ss_dssp SSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCC-------------
T ss_pred CcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCce-------------
Confidence 0146899999999999875431 1134799999887431
Q ss_pred cEEeeec-------ccceEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCce----eEEEEecCC-E
Q 004766 295 FVKLIDG-------FDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVL----ESATAVNLN-Q 362 (732)
Q Consensus 295 ~~~l~~~-------~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l----~~~~~~~~~-~ 362 (732)
...+... .......|||||+.+++.+++......|+++|+++++ ...++.......+ ..+.|++++ .
T Consensus 241 ~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~-~~~~~~~~~~~~~~~~~~~~~~spdg~~ 319 (723)
T 1xfd_A 241 DLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGV-CTKKHEDESEAWLHRQNEEPVFSKDGRK 319 (723)
T ss_dssp CEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCC-EEEEEEEECSSCCCCCCCCCEECTTSCS
T ss_pred eEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCc-ceEEEEeccCCEEeccCCCceEcCCCCe
Confidence 1222211 1111235999999877776665556789999998886 3444322111222 267888764 4
Q ss_pred EEEE-EecCC----eeEEEEEe-CCCCce--eeecccccceee-EeecccCCcEEEEEEecCC-CCceEEEEECCCC
Q 004766 363 MIVS-YLSDV----KYVLQIRD-LKNGSL--LHQLPIEIGSVN-AISARREDSVVFISFTSFL-IPGIVYQCNLKTE 429 (732)
Q Consensus 363 l~~~-~~~~g----~~~l~~~d-~~~g~~--~~~l~~~~g~v~-~~~~s~d~~~l~~~~ss~~-~p~~~y~~d~~~~ 429 (732)
|++. ...++ ..+|+++| ..+++. .+.++.....+. .+.+++|++.|++..+... .-..+|.+++.++
T Consensus 320 l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~ 396 (723)
T 1xfd_A 320 FFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGN 396 (723)
T ss_dssp EEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTT
T ss_pred EEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCC
Confidence 6665 55666 66899999 554441 356653333333 3578999998877654420 2345777766543
|
| >2gzs_A IROE protein; enterobactin, salmochelin, DFP, hydrolase, catalytic DYAD; HET: DFP; 1.40A {Escherichia coli} SCOP: c.69.1.38 PDB: 2gzr_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=2.4e-15 Score=152.99 Aligned_cols=223 Identities=10% Similarity=0.039 Sum_probs=143.1
Q ss_pred eEEEEEEEccC-CCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHh-cCcEEEEEcccCCCCC--
Q 004766 450 HVHQVFVPSKD-GSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRH-LGAVFCIANIRGGGEY-- 525 (732)
Q Consensus 450 ~~~~~~~~s~d-G~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~-~G~~v~~~~~rG~g~~-- 525 (732)
..+.+.+.|.. | .++.++++.|+++.+.+++|+|++.||+.... .....+...+.+ .+.+|+.++++++..+
T Consensus 12 ~~~~~~~~S~~~~-~~~~~~vylP~~y~~~~~yPvly~l~G~~~~~---~~~~~~~~~l~~~~~~ivV~v~~~~~~~~~~ 87 (278)
T 2gzs_A 12 HFSATSFDSVDGT-RHYRVWTAVPNTTAPASGYPILYMLDGNAVMD---RLDDELLKQLSEKTPPVIVAVGYQTNLPFDL 87 (278)
T ss_dssp EEEEEEEECTTSS-CEEEEEEEEESSCCCTTCEEEEEESSHHHHHH---HCCHHHHHHHTTSCCCEEEEEEESSSSSCCH
T ss_pred ceEEEEEEcCCCC-ceEEEEEECCCCCCCCCCCCEEEEeeChhHHH---HHHHHHHHHhccCCCeEEEEEcCCCCCcCcc
Confidence 56777888876 6 89999999999986667899887777764321 111223333443 5788888888765322
Q ss_pred ---chhHHhcc-------------cccCCccHHHHHHH--HHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeee
Q 004766 526 ---GEEWHKGG-------------ALAKKQNCFDDFIS--ASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFG 587 (732)
Q Consensus 526 ---g~~~~~~~-------------~~~~~~~~~~D~~~--~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~ 587 (732)
+.++.... ....+...+.+++. .+.++.++..+|++|++|+|+||||++++.++.+ |++|+
T Consensus 88 ~~R~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~i~~~~~~~~~r~~i~G~S~GG~~a~~~~~~-p~~f~ 166 (278)
T 2gzs_A 88 NSRAYDYTPAAESRKTDLHSGRFSRKSGGSNNFRQLLETRIAPKVEQGLNIDRQRRGLWGHSYGGLFVLDSWLS-SSYFR 166 (278)
T ss_dssp HHHHHHTCCGGGGTTCSCC-----CCCCCHHHHHHHHHHTHHHHHTTTSCEEEEEEEEEEETHHHHHHHHHHHH-CSSCS
T ss_pred cccccccCCCCccccccccccCcCCCcCCHHHHHHHHHHHHHHHHHHhccCCCCceEEEEECHHHHHHHHHHhC-ccccC
Confidence 11221110 00111233444442 2334444445788999999999999999999999 99999
Q ss_pred EEEEcCCcccccccccCCCCCccccccCCCCCHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCC----
Q 004766 588 CALAHVGVMDMLRYHKFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRV---- 663 (732)
Q Consensus 588 a~v~~~p~~d~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v---- 663 (732)
++++.+|.+.+.. ......+..+.+ .. ...+|++|.||..|.++
T Consensus 167 ~~~~~s~~~~~~~-------------------~~~~~~~~~~~~----~~---------~~~~~i~l~~G~~d~~~~~~~ 214 (278)
T 2gzs_A 167 SYYSASPSLGRGY-------------------DALLSRVTAVEP----LQ---------FCTKHLAIMEGSATQGDNRET 214 (278)
T ss_dssp EEEEESGGGSTTH-------------------HHHHHHHHTSCT----TT---------TTTCEEEEEECCC--------
T ss_pred eEEEeCcchhcCc-------------------chHHHHHHHhhc----cC---------CCCCcEEEEecCccccccccc
Confidence 9999998642210 111122222221 01 13579999999999875
Q ss_pred ----CchHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeCCCCCCCCCchHHHHHHHHHHHHHHHH
Q 004766 664 ----VPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAK 724 (732)
Q Consensus 664 ----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~ 724 (732)
++.++.+++++|+++ |.++.+.++++++|+... .......+.||.+
T Consensus 215 ~~~~~~~~~~~~~~~L~~~----------g~~~~~~~~~g~~H~~~~-----~~~~~~~l~fl~~ 264 (278)
T 2gzs_A 215 HAVGVLSKIHTTLTILKDK----------GVNAVFWDFPNLGHGPMF-----NASFRQALLDISG 264 (278)
T ss_dssp ---CHHHHHHHHHHHHHHT----------TCCEEEEECTTCCHHHHH-----HHHHHHHHHHHTT
T ss_pred hhhhhHHHHHHHHHHHHcC----------CCeeEEEEcCCCCccchh-----HHHHHHHHHHHhh
Confidence 478999999999988 999999999999997432 2223445667754
|
| >3ia2_A Arylesterase; alpha-beta hydrolase fold, transition state analog, hydrolas oxidoreductase, peroxidase; 1.65A {Pseudomonas fluorescens} SCOP: c.69.1.12 PDB: 1va4_A 3t52_A* 3t4u_A* 3hi4_A 3hea_A | Back alignment and structure |
|---|
Probab=99.65 E-value=2e-15 Score=152.98 Aligned_cols=221 Identities=19% Similarity=0.180 Sum_probs=130.4
Q ss_pred EEccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccc
Q 004766 456 VPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGAL 535 (732)
Q Consensus 456 ~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~ 535 (732)
+++.|| ++|.+... +..|.||++||..+... .|... ...|.++||.|+++|+||.|.....+
T Consensus 3 ~~~~~g-~~l~y~~~--------G~g~~vvllHG~~~~~~--~w~~~-~~~l~~~g~~vi~~D~~G~G~S~~~~------ 64 (271)
T 3ia2_A 3 FVAKDG-TQIYFKDW--------GSGKPVLFSHGWLLDAD--MWEYQ-MEYLSSRGYRTIAFDRRGFGRSDQPW------ 64 (271)
T ss_dssp EECTTS-CEEEEEEE--------SSSSEEEEECCTTCCGG--GGHHH-HHHHHTTTCEEEEECCTTSTTSCCCS------
T ss_pred EEcCCC-CEEEEEcc--------CCCCeEEEECCCCCcHH--HHHHH-HHHHHhCCceEEEecCCCCccCCCCC------
Confidence 567799 88876543 23467899999876643 34433 34455589999999999988653221
Q ss_pred cCCccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhh-CCCeeeEEEEcCCccccccccc-CCCC--C---
Q 004766 536 AKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQ-RPDLFGCALAHVGVMDMLRYHK-FTIG--H--- 608 (732)
Q Consensus 536 ~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~-~p~~f~a~v~~~p~~d~~~~~~-~~~~--~--- 608 (732)
...+++++.+.+..+++. .+.+++.++|+||||++++.++.+ .|++++++|+..+......... ...+ .
T Consensus 65 --~~~~~~~~a~d~~~~l~~--l~~~~~~lvGhS~GG~~~~~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~ 140 (271)
T 3ia2_A 65 --TGNDYDTFADDIAQLIEH--LDLKEVTLVGFSMGGGDVARYIARHGSARVAGLVLLGAVTPLFGQKPDYPQGVPLDVF 140 (271)
T ss_dssp --SCCSHHHHHHHHHHHHHH--HTCCSEEEEEETTHHHHHHHHHHHHCSTTEEEEEEESCCCSBCBCBTTBTTSBCHHHH
T ss_pred --CCCCHHHHHHHHHHHHHH--hCCCCceEEEEcccHHHHHHHHHHhCCcccceEEEEccCCccccCCCCCcccccHHHH
Confidence 123445555544444443 234689999999999877666555 5999999988765432211000 0000 0
Q ss_pred ------------cccc----c-c----CCCCCHHH----------------HHHHHhc---CcccCCCCCCCCCCCCCCC
Q 004766 609 ------------AWVS----D-F----GCSEEEEE----------------FYWLIKY---SPLHNVRRPWEQNPDKPFQ 648 (732)
Q Consensus 609 ------------~~~~----~-~----g~p~~~~~----------------~~~~~~~---sp~~~~~~~~~~~~~~~~~ 648 (732)
.+.. . + +....+.. ++.+..+ +....+. .+
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----------~i 210 (271)
T 3ia2_A 141 ARFKTELLKDRAQFISDFNAPFYGINKGQVVSQGVQTQTLQIALLASLKATVDCVTAFAETDFRPDMA----------KI 210 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTGGGTCCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHCBCHHHHT----------TC
T ss_pred HHHHHHHHhhHHHHHHHhhHhhhccccccccCHHHHHHHHhhhhhccHHHHHHHHHHhhccCCccccc----------CC
Confidence 0000 0 0 00001100 0011111 1111122 37
Q ss_pred CCeEEEEeeCCCCCCCchHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeCCCCCCCCCchHHHHHHHHHHHHHHH
Q 004766 649 YPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMA 723 (732)
Q Consensus 649 ~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~ 723 (732)
..|+||++|++|..||+.++.++.+++.. ..++++++++||....... .+..+.+.+||.
T Consensus 211 ~~P~Lvi~G~~D~~~p~~~~~~~~~~~~~-------------~~~~~~~~~~gH~~~~e~p--~~~~~~i~~Fl~ 270 (271)
T 3ia2_A 211 DVPTLVIHGDGDQIVPFETTGKVAAELIK-------------GAELKVYKDAPHGFAVTHA--QQLNEDLLAFLK 270 (271)
T ss_dssp CSCEEEEEETTCSSSCGGGTHHHHHHHST-------------TCEEEEETTCCTTHHHHTH--HHHHHHHHHHHT
T ss_pred CCCEEEEEeCCCCcCChHHHHHHHHHhCC-------------CceEEEEcCCCCcccccCH--HHHHHHHHHHhh
Confidence 89999999999999999986666555432 2588999999998753322 345566777874
|
| >3guu_A Lipase A; protein structure, hydrolase; HET: 1PE; 2.10A {Candida antarctica} PDB: 2veo_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=3.3e-15 Score=159.79 Aligned_cols=249 Identities=12% Similarity=-0.019 Sum_probs=155.9
Q ss_pred CceEEEEEEEccC--C-CeeEEEEEEEcCCCCCCCCccEEEEEcCCCCcc--CCCCc----------------Ch-hHHH
Q 004766 448 EFHVHQVFVPSKD--G-STKIPMFIVSKKNIKLDGSHPCLLYGYGGFNIS--VTPSF----------------SV-SRTI 505 (732)
Q Consensus 448 ~~~~~~~~~~s~d--G-~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~--~~~~~----------------~~-~~~~ 505 (732)
.....++.|.|.| | ++.+.+.++.|++. .++.|+|.|.||-.+.. ..|++ .. .+..
T Consensus 72 ~~~a~ri~Y~std~~G~p~~~~gtv~~P~~~--~~~~pvvs~~hgt~g~~~~CaPS~~~~~~~~~~~~~~~~~e~~~~~~ 149 (462)
T 3guu_A 72 NAASFQLQYRTTNTQNEAVADVATVWIPAKP--ASPPKIFSYQVYEDATALDCAPSYSYLTGLDQPNKVTAVLDTPIIIG 149 (462)
T ss_dssp TCEEEEEEEEEECTTSCEEEEEEEEEECSSC--CSSCEEEEEECCCCCCSGGGCHHHHHBSCSCCTTGGGGSTHHHHHHH
T ss_pred CceEEEEEEEEECCCCCEEEEEEEEEecCCC--CCCCcEEEEeCCcccCCCCcCCccccccCCCccccchhhhhHHHHHH
Confidence 4477888887764 4 23367889999874 24589999999976542 12221 11 1244
Q ss_pred H-HHhcCcEEEEEcccCCCCCchhHHhcccccCCccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhC--
Q 004766 506 L-MRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQR-- 582 (732)
Q Consensus 506 ~-l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~-- 582 (732)
+ ++ +||+|+++|++|.|. .|... ... .....|.+.++..+. +.....+++++|+|+||..+++++...
T Consensus 150 ~~l~-~G~~Vv~~Dy~G~G~---~y~~~-~~~--~~~vlD~vrAa~~~~--~~~~~~~v~l~G~S~GG~aal~aa~~~~~ 220 (462)
T 3guu_A 150 WALQ-QGYYVVSSDHEGFKA---AFIAG-YEE--GMAILDGIRALKNYQ--NLPSDSKVALEGYSGGAHATVWATSLAES 220 (462)
T ss_dssp HHHH-TTCEEEEECTTTTTT---CTTCH-HHH--HHHHHHHHHHHHHHT--TCCTTCEEEEEEETHHHHHHHHHHHHHHH
T ss_pred HHHh-CCCEEEEecCCCCCC---cccCC-cch--hHHHHHHHHHHHHhc--cCCCCCCEEEEeeCccHHHHHHHHHhChh
Confidence 5 55 999999999999774 22211 000 122345555554443 433357999999999999998887753
Q ss_pred --CC-eeeEEEEcCCcccccccccCCCCCcc---------------------ccccCCC---------------------
Q 004766 583 --PD-LFGCALAHVGVMDMLRYHKFTIGHAW---------------------VSDFGCS--------------------- 617 (732)
Q Consensus 583 --p~-~f~a~v~~~p~~d~~~~~~~~~~~~~---------------------~~~~g~p--------------------- 617 (732)
|+ .++++++..+..|+........+..+ ..++-+|
T Consensus 221 yapel~~~g~~~~~~p~dl~~~~~~~~~~~~~g~~~~~l~Gl~~~yP~l~~~l~~~lt~~g~~~~~~~~~~~~C~~~~~~ 300 (462)
T 3guu_A 221 YAPELNIVGASHGGTPVSAKDTFTFLNGGPFAGFALAGVSGLSLAHPDMESFIEARLNAKGQRTLKQIRGRGFCLPQVVL 300 (462)
T ss_dssp HCTTSEEEEEEEESCCCBHHHHHHHHTTSTTHHHHHHHHHHHHHHCHHHHHHHHTTBCHHHHHHHHHHTSTTCCHHHHHH
T ss_pred hcCccceEEEEEecCCCCHHHHHHHhccchhHHHHHHHHHhHHhhCcchhHHHHHHhCHHHHHHHHHHHhcCcchHHHHH
Confidence 45 58888888887776432110000000 0001011
Q ss_pred -----------------CCHHHHHHHHhcCccc-CCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhh
Q 004766 618 -----------------EEEEEFYWLIKYSPLH-NVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVL 679 (732)
Q Consensus 618 -----------------~~~~~~~~~~~~sp~~-~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~ 679 (732)
.++...+.+.+.+.-. .... ...+...|+||+||.+|.+||+.++.++++++++.
T Consensus 301 ~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~lg~~~~~~------g~~~~~~PvlI~hG~~D~vVP~~~s~~l~~~l~~~- 373 (462)
T 3guu_A 301 TYPFLNVFSLVNDTNLLNEAPIASILKQETVVQAEASY------TVSVPKFPRFIWHAIPDEIVPYQPAATYVKEQCAK- 373 (462)
T ss_dssp HCTTCCGGGGBSCTTGGGSTTHHHHHHHSBCCTTTCSS------CCCCCCSEEEEEEETTCSSSCHHHHHHHHHHHHHT-
T ss_pred hhccCCHHHHcCCCccccCHHHHHHHHhhccccccccc------CCCCCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHc-
Confidence 1112222222221100 0000 01247889999999999999999999999999988
Q ss_pred cCCCCCCCCCCCEEEEEeCCCCCCCCCchHHHHHHHHHHHHHHHHHhCC
Q 004766 680 CTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLGA 728 (732)
Q Consensus 680 ~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~ 728 (732)
|.++++++|++++|+... .....+.++||.+++..
T Consensus 374 ---------G~~V~~~~y~~~~H~~~~-----~~~~~d~l~WL~~r~~G 408 (462)
T 3guu_A 374 ---------GANINFSPYPIAEHLTAE-----IFGLVPSLWFIKQAFDG 408 (462)
T ss_dssp ---------TCEEEEEEESSCCHHHHH-----HHTHHHHHHHHHHHHHT
T ss_pred ---------CCCeEEEEECcCCccCch-----hhhHHHHHHHHHHHhCC
Confidence 889999999999997642 23466789999998754
|
| >2y6u_A Peroxisomal membrane protein LPX1; hydrolase, putative esterase, putative lipase; HET: CME CSO; 1.90A {Saccharomyces cerevisiae} PDB: 2y6v_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=7.1e-16 Score=165.89 Aligned_cols=239 Identities=13% Similarity=0.074 Sum_probs=146.7
Q ss_pred EEccCCCeeEEEEEEEcCC---CCCCCCccEEEEEcCCCCccCCCCcChhHHHHHH----hcCc---EEEEEcccCCCCC
Q 004766 456 VPSKDGSTKIPMFIVSKKN---IKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMR----HLGA---VFCIANIRGGGEY 525 (732)
Q Consensus 456 ~~s~dG~~~i~~~~~~p~~---~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~----~~G~---~v~~~~~rG~g~~ 525 (732)
+.+.|| .+|.+..+.|.+ ..+.++.|+||++||..+... .|.... ..|. +.|| .|+++|+||.|..
T Consensus 25 ~~~~dg-~~l~~~~~g~~~~~~~~~~~~~~~vvllHG~~~~~~--~~~~~~-~~L~~~~~~~G~~~~~vi~~D~~G~G~S 100 (398)
T 2y6u_A 25 LCATDR-LELTYDVYTSAERQRRSRTATRLNLVFLHGSGMSKV--VWEYYL-PRLVAADAEGNYAIDKVLLIDQVNHGDS 100 (398)
T ss_dssp SSTTCC-CEEEEEEEEESCTTTCCTTCEEEEEEEECCTTCCGG--GGGGGG-GGSCCCBTTTTEEEEEEEEECCTTSHHH
T ss_pred ccCCCc-eEEEEEEEecCCCCCCCCCCCCCeEEEEcCCCCcHH--HHHHHH-HHHHHhhhhcCcceeEEEEEcCCCCCCC
Confidence 457799 999999998865 122345689999999877643 344333 3344 3589 9999999996643
Q ss_pred chhHHhcccccCCccHHHHHHHHHHHHHHc--C--CCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCccccccc
Q 004766 526 GEEWHKGGALAKKQNCFDDFISASEYLISA--G--YTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRY 601 (732)
Q Consensus 526 g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~--~--~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~ 601 (732)
.. ..........++.+....+..+++. + -.++.++.++|+|+||.+++.++.++|++++++|+..|.......
T Consensus 101 ~~---~~~~~~~~~~~~~~~~~dl~~~l~~~~~~~~~~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~ 177 (398)
T 2y6u_A 101 AV---RNRGRLGTNFNWIDGARDVLKIATCELGSIDSHPALNVVIGHSMGGFQALACDVLQPNLFHLLILIEPVVITRKA 177 (398)
T ss_dssp HH---HTTTTBCSCCCHHHHHHHHHHHHHHHTCSSTTCSEEEEEEEETHHHHHHHHHHHHCTTSCSEEEEESCCCSCCCC
T ss_pred CC---CCccccCCCCCcchHHHHHHHHHHHhcccccccCCceEEEEEChhHHHHHHHHHhCchheeEEEEeccccccccc
Confidence 21 1100011123444444443333332 2 134456999999999999999999999999999999887654110
Q ss_pred -------cc---------------CCCCCccc---------c--ccCCCCCHHHHHHHHhcC------------------
Q 004766 602 -------HK---------------FTIGHAWV---------S--DFGCSEEEEEFYWLIKYS------------------ 630 (732)
Q Consensus 602 -------~~---------------~~~~~~~~---------~--~~g~p~~~~~~~~~~~~s------------------ 630 (732)
.. ......|. . .+....+++..+.+....
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (398)
T 2y6u_A 178 IGAGRPGLPPDSPQIPENLYNSLRLKTCDHFANESEYVKYMRNGSFFTNAHSQILQNIIDFERTKASGDDEDGGPVRTKM 257 (398)
T ss_dssp CSCCCTTCCTTCCCCCHHHHHHHHHTCCCEESSHHHHHHHHHHTSTTTTSCHHHHHHHHHHHEEC--------CCEEESS
T ss_pred cccccccccccccccchhhHHHhhhhccccCCCHHHHHHHhhcCcccccCCHHHHHHHHHhcCccccccccCCCceEecC
Confidence 00 00000000 0 011122333333332210
Q ss_pred ------------------cccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhcCCCCCCCCCCCE
Q 004766 631 ------------------PLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPI 692 (732)
Q Consensus 631 ------------------p~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 692 (732)
+...+. .+.+|+|+++|.+|..||+..+.++++.+. .+
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~l~----------~i~~PvLii~G~~D~~~~~~~~~~l~~~~~--------------~~ 313 (398)
T 2y6u_A 258 EQAQNLLCYMNMQTFAPFLISNVK----------FVRKRTIHIVGARSNWCPPQNQLFLQKTLQ--------------NY 313 (398)
T ss_dssp CHHHHHHTTSCGGGTHHHHHHHGG----------GCCSEEEEEEETTCCSSCHHHHHHHHHHCS--------------SE
T ss_pred CchhhhhhhcccccchHHHHHhcc----------ccCCCEEEEEcCCCCCCCHHHHHHHHHhCC--------------Cc
Confidence 001112 378999999999999999988877766543 36
Q ss_pred EEEEeCCCCCCCCCchHHHHHHHHHHHHHHHHHhC
Q 004766 693 IGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLG 727 (732)
Q Consensus 693 ~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 727 (732)
.+++++++||...... ..+....+.+||.+++.
T Consensus 314 ~~~~~~~~gH~~~~e~--p~~~~~~i~~fl~~~~~ 346 (398)
T 2y6u_A 314 HLDVIPGGSHLVNVEA--PDLVIERINHHIHEFVL 346 (398)
T ss_dssp EEEEETTCCTTHHHHS--HHHHHHHHHHHHHHHHH
T ss_pred eEEEeCCCCccchhcC--HHHHHHHHHHHHHHHHH
Confidence 8999999999864322 23456678889988763
|
| >1qlw_A Esterase; anisotropic refinement, atomic resolution, alpha/beta hydrolase; 1.09A {Alcaligenes SP} SCOP: c.69.1.15 PDB: 2wkw_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=2.5e-15 Score=157.06 Aligned_cols=203 Identities=8% Similarity=-0.013 Sum_probs=138.3
Q ss_pred eEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcCh------hHHHHHHhcCcEEEEEcccCCCCCchhHHhcc----
Q 004766 464 KIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSV------SRTILMRHLGAVFCIANIRGGGEYGEEWHKGG---- 533 (732)
Q Consensus 464 ~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~------~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~---- 533 (732)
.+.+.++.|.+ .+.|.||++||+..... .|.. .+...|.++||.|+++|+||.|..+..-....
T Consensus 49 ~~~~~~~~p~~----~~~~~vvl~HG~g~~~~--~~~~~pdg~~~~~~~l~~~G~~V~~~D~~G~G~S~~~~~~~~~~~~ 122 (328)
T 1qlw_A 49 QMYVRYQIPQR----AKRYPITLIHGCCLTGM--TWETTPDGRMGWDEYFLRKGYSTYVIDQSGRGRSATDISAINAVKL 122 (328)
T ss_dssp CEEEEEEEETT----CCSSCEEEECCTTCCGG--GGSSCTTSCCCHHHHHHHTTCCEEEEECTTSTTSCCCCHHHHHHHT
T ss_pred eEEEEEEccCC----CCCccEEEEeCCCCCCC--ccccCCCCchHHHHHHHHCCCeEEEECCCCcccCCCCCcccccccc
Confidence 45555566654 23477999999875543 3332 24555666999999999999876543211000
Q ss_pred ------------------------cc-cC---------CccHHHH------------------HHHHHHHHHHcCCCCCC
Q 004766 534 ------------------------AL-AK---------KQNCFDD------------------FISASEYLISAGYTQSR 561 (732)
Q Consensus 534 ------------------------~~-~~---------~~~~~~D------------------~~~~~~~l~~~~~~d~~ 561 (732)
.. .+ ....+++ +.+++..++++ . +
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~--~ 198 (328)
T 1qlw_A 123 GKAPASSLPDLFAAGHEAAWAIFRFGPRYPDAFKDTQFPVQAQAELWQQMVPDWLGSMPTPNPTVANLSKLAIK--L--D 198 (328)
T ss_dssp TSSCGGGSCCCBCCCHHHHHHHTTSSSBTTBCCTTCCSCGGGHHHHHHHCCCBCGGGSCSSCHHHHHHHHHHHH--H--T
T ss_pred cccCcccccceeccchhhhhhHhhhcccCCccCcCccCCHHHHHHHHHHhCccccccCCChhHHHHHHHHHHHH--h--C
Confidence 00 00 0001333 55555666554 1 3
Q ss_pred cEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCcccccccccCCCCCccccccCCCCCHHHHHHHHhcCcccCCCCCCCC
Q 004766 562 KLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQ 641 (732)
Q Consensus 562 ~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~sp~~~~~~~~~~ 641 (732)
++.++|+|+||.+++.++.++|++++++|+..|... . ++ ....+
T Consensus 199 ~~~lvGhS~GG~~a~~~a~~~p~~v~~~v~~~p~~~------------------~-------------~~-~~~~~---- 242 (328)
T 1qlw_A 199 GTVLLSHSQSGIYPFQTAAMNPKGITAIVSVEPGEC------------------P-------------KP-EDVKP---- 242 (328)
T ss_dssp SEEEEEEGGGTTHHHHHHHHCCTTEEEEEEESCSCC------------------C-------------CG-GGCGG----
T ss_pred CceEEEECcccHHHHHHHHhChhheeEEEEeCCCCC------------------C-------------CH-HHHhh----
Confidence 899999999999999999999999999999887430 0 00 11111
Q ss_pred CCCCCCCCCeEEEEeeCCCCCCCc-----hHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeCCCC-----CCCCCchHHH
Q 004766 642 NPDKPFQYPSTLLLTADHDDRVVP-----LHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAG-----HGVGLPTQKM 711 (732)
Q Consensus 642 ~~~~~~~~~p~Li~~g~~D~~v~~-----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g-----H~~~~~~~~~ 711 (732)
....|+||+||++|..||+ .++.+++++++.+ |.++++++++++| |......+.
T Consensus 243 -----~~~~PvLii~G~~D~~~p~~~~~~~~~~~~~~~l~~~----------g~~~~~~~~~~~gi~G~~H~~~~~~~~- 306 (328)
T 1qlw_A 243 -----LTSIPVLVVFGDHIEEFPRWAPRLKACHAFIDALNAA----------GGKGQLMSLPALGVHGNSHMMMQDRNN- 306 (328)
T ss_dssp -----GTTSCEEEEECSSCTTCTTTHHHHHHHHHHHHHHHHT----------TCCEEEEEGGGGTCCCCCTTGGGSTTH-
T ss_pred -----ccCCCEEEEeccCCccccchhhHHHHHHHHHHHHHHh----------CCCceEEEcCCCCcCCCcccchhccCH-
Confidence 1457999999999999997 8899999999987 7889999999666 987655422
Q ss_pred HHHHHHHHHHHHHHhCC
Q 004766 712 IDEAADRYGFMAKMLGA 728 (732)
Q Consensus 712 ~~~~~~~~~fl~~~l~~ 728 (732)
.+....+.+||.+++..
T Consensus 307 ~~~~~~i~~fl~~~~~~ 323 (328)
T 1qlw_A 307 LQVADLILDWIGRNTAK 323 (328)
T ss_dssp HHHHHHHHHHHHHTCC-
T ss_pred HHHHHHHHHHHHhcccC
Confidence 45677888999987653
|
| >3vdx_A Designed 16NM tetrahedral protein CAGE containing bromoperoxidase BPO-A2 and matrix...; protein design, bionanotechnology; 3.00A {Streptomyces aureofaciens} PDB: 4d9j_A | Back alignment and structure |
|---|
Probab=99.65 E-value=1.7e-14 Score=157.75 Aligned_cols=235 Identities=14% Similarity=0.044 Sum_probs=139.6
Q ss_pred EEEEEccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhc
Q 004766 453 QVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKG 532 (732)
Q Consensus 453 ~~~~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~ 532 (732)
.+.+.+.|| .+|.+... +..|+||++||+.+... .|.. +...|.++||.|+++|+||.|.....
T Consensus 5 ~~~~~~~dG-~~l~y~~~--------G~gp~VV~lHG~~~~~~--~~~~-l~~~La~~Gy~Vi~~D~rG~G~S~~~---- 68 (456)
T 3vdx_A 5 TVGQENSTS-IDLYYEDH--------GTGVPVVLIHGFPLSGH--SWER-QSAALLDAGYRVITYDRRGFGQSSQP---- 68 (456)
T ss_dssp EEEEETTEE-EEEEEEEE--------SSSEEEEEECCTTCCGG--GGTT-HHHHHHHHTEEEEEECCTTSTTSCCC----
T ss_pred eecccccCC-eEEEEEEe--------CCCCEEEEECCCCCcHH--HHHH-HHHHHHHCCcEEEEECCCCCCCCCCC----
Confidence 345567788 77775432 35689999999877643 3444 34555449999999999998865321
Q ss_pred ccccCCccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhC-CCeeeEEEEcCCcccccccccCCC-CC--
Q 004766 533 GALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQR-PDLFGCALAHVGVMDMLRYHKFTI-GH-- 608 (732)
Q Consensus 533 ~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~-p~~f~a~v~~~p~~d~~~~~~~~~-~~-- 608 (732)
....+++++.+.+..+++. .+.+++.++|+|+||++++.++.++ |++++++|+..|............ +.
T Consensus 69 ----~~~~s~~~~a~dl~~~l~~--l~~~~v~LvGhS~GG~ia~~~aa~~~p~~v~~lVli~~~~~~~~~~~~~~~~~~~ 142 (456)
T 3vdx_A 69 ----TTGYDYDTFAADLNTVLET--LDLQDAVLVGFSMGTGEVARYVSSYGTARIAAVAFLASLEPFLLKTDDNPDGAAP 142 (456)
T ss_dssp ----SSCCSHHHHHHHHHHHHHH--HTCCSEEEEEEGGGGHHHHHHHHHHCSSSEEEEEEESCCCSCCBCCSSCCSCSBC
T ss_pred ----CCCCCHHHHHHHHHHHHHH--hCCCCeEEEEECHHHHHHHHHHHhcchhheeEEEEeCCcccccccccccccccch
Confidence 1223455555544444443 2456899999999999888888876 999999999988764322111000 00
Q ss_pred ----------------ccc----cc-cC------CCCCHHHHHHHHh----cCcc-------cCCCCCCCCCCCCCCCCC
Q 004766 609 ----------------AWV----SD-FG------CSEEEEEFYWLIK----YSPL-------HNVRRPWEQNPDKPFQYP 650 (732)
Q Consensus 609 ----------------~~~----~~-~g------~p~~~~~~~~~~~----~sp~-------~~~~~~~~~~~~~~~~~~ 650 (732)
.+. .. +. ....++....+.. ..+. ..... .......+..
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d---~~~~l~~i~~ 219 (456)
T 3vdx_A 143 QEFFDGIVAAVKADRYAFYTGFFNDFYNLDENLGTRISEEAVRNSWNTAASGGFFAAAAAPTTWYTD---FRADIPRIDV 219 (456)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHTTTTTSBTTTBCHHHHHHHHHHHHTSCTTHHHHGGGGTTCC---CTTTSTTCCS
T ss_pred HHHHHHHHHhhhccchHHHHHHHHHHhcccccccccccHHHHHHHhhhccccchhhhhhhhhhhhhh---HHHHhhhCCC
Confidence 000 00 00 0111111111110 0000 00000 0011123789
Q ss_pred eEEEEeeCCCCCCCchHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeCCCCCCCCCchHHHHHHHHHHHHHHHHHhC
Q 004766 651 STLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLG 727 (732)
Q Consensus 651 p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 727 (732)
|+|+++|.+|..||+.+..+..+++ ...+.+++++++||....... ......+.+||.+++.
T Consensus 220 PvLiI~G~~D~~vp~~~~~~~l~~~-------------~~~~~~~~i~gagH~~~~e~p--~~v~~~I~~FL~~~l~ 281 (456)
T 3vdx_A 220 PALILHGTGDRTLPIENTARVFHKA-------------LPSAEYVEVEGAPHGLLWTHA--EEVNTALLAFLAKALE 281 (456)
T ss_dssp CCEEEEETTCSSSCGGGTHHHHHHH-------------CTTSEEEEETTCCSCTTTTTH--HHHHHHHHHHHHHHHH
T ss_pred CEEEEEeCCCCCcCHHHHHHHHHHH-------------CCCceEEEeCCCCCcchhhCH--HHHHHHHHHHHHHhhc
Confidence 9999999999999998444433332 223588999999999765333 3566678889988763
|
| >2pl5_A Homoserine O-acetyltransferase; alpha/beta hydrolase superfa transferase; 2.20A {Leptospira interrogans} SCOP: c.69.1.40 | Back alignment and structure |
|---|
Probab=99.64 E-value=2.8e-15 Score=159.09 Aligned_cols=236 Identities=14% Similarity=0.102 Sum_probs=144.3
Q ss_pred CCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCC-----------CcChhHH---HHHHhcCcEEEEEcccC--CC
Q 004766 460 DGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTP-----------SFSVSRT---ILMRHLGAVFCIANIRG--GG 523 (732)
Q Consensus 460 dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~-----------~~~~~~~---~~l~~~G~~v~~~~~rG--~g 523 (732)
+| .++.+...-+.+ ....|+||++||..+..... .|..... .++. +||.|+++|+|| .|
T Consensus 29 ~g-~~l~y~~~g~~~---~~~~~~vvllHG~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~-~g~~vi~~D~~G~~~G 103 (366)
T 2pl5_A 29 SP-VVIAYETYGTLS---SSKNNAILICHALSGDAHAAGYHSGSDKKPGWWDDYIGPGKSFDT-NQYFIICSNVIGGCKG 103 (366)
T ss_dssp SS-EEEEEEEEECCC---TTSCCEEEEECCSSCCSCCSSBSSTTCSSCCTTTTTEETTSSEET-TTCEEEEECCTTCSSS
T ss_pred cC-ceeeEEeccCcC---CCCCceEEEecccCCcccccccccccccccchHHhhcCCcccccc-cccEEEEecCCCcccC
Confidence 44 556555444332 12368999999988775421 3433221 2234 899999999999 56
Q ss_pred CCchhHHhcc-----cccCCccHHHHHHHHHHHHHHcCCCCCCcE-EEEecChhHHHHHHHHhhCCCeeeEEEEcCCccc
Q 004766 524 EYGEEWHKGG-----ALAKKQNCFDDFISASEYLISAGYTQSRKL-CIEGGSNGGLLVGACINQRPDLFGCALAHVGVMD 597 (732)
Q Consensus 524 ~~g~~~~~~~-----~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i-~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d 597 (732)
..+..-.... .......+++++.+.+..+++. ...+++ .++|+|+||++++.++.++|++++++|+..|...
T Consensus 104 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~l~~--l~~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~ 181 (366)
T 2pl5_A 104 SSGPLSIHPETSTPYGSRFPFVSIQDMVKAQKLLVES--LGIEKLFCVAGGSMGGMQALEWSIAYPNSLSNCIVMASTAE 181 (366)
T ss_dssp SSSTTSBCTTTSSBCGGGSCCCCHHHHHHHHHHHHHH--TTCSSEEEEEEETHHHHHHHHHHHHSTTSEEEEEEESCCSB
T ss_pred CCCCCCCCCCCCccccCCCCcccHHHHHHHHHHHHHH--cCCceEEEEEEeCccHHHHHHHHHhCcHhhhheeEeccCcc
Confidence 5432100000 0000124678888777777765 345688 8999999999999999999999999999888654
Q ss_pred ccccc------------c--------C--------------------CCCCccccccC----------------------
Q 004766 598 MLRYH------------K--------F--------------------TIGHAWVSDFG---------------------- 615 (732)
Q Consensus 598 ~~~~~------------~--------~--------------------~~~~~~~~~~g---------------------- 615 (732)
..... . + .....+...+.
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (366)
T 2pl5_A 182 HSAMQIAFNEVGRQAILSDPNWKNGLYDENSPRKGLALARMVGHITYLSDDKMREKFGRNPPRGNILSTDFAVGSYLIYQ 261 (366)
T ss_dssp CCHHHHHHHHHHHHHHHTSTTCGGGTCSSSCCHHHHHHHHHHHHHTTBCHHHHHHHHTTSCCSSCTTTTTTTSCGGGGST
T ss_pred CCCccchhhHHHHHHHHhCcccccccccccccccchHHHHHhhccccCCHHHHHHHhhhhhhcccccchhhhHHHHHHHH
Confidence 31100 0 0 00000000000
Q ss_pred -----CCCCHHHH----HHHHhcCccc------CCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhc
Q 004766 616 -----CSEEEEEF----YWLIKYSPLH------NVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLC 680 (732)
Q Consensus 616 -----~p~~~~~~----~~~~~~sp~~------~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~ 680 (732)
....+..+ ..+..+.... .+. .+..|+||++|.+|..||+..+.++++.+...
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----------~i~~P~lii~G~~D~~~~~~~~~~~~~~~~~~-- 329 (366)
T 2pl5_A 262 GESFVDRFDANSYIYVTKALDHYSLGKGKELTAALS----------NATCRFLVVSYSSDWLYPPAQSREIVKSLEAA-- 329 (366)
T ss_dssp TCCSSSCCCHHHHHHHHHHHHHCBCCSHHHHHHHHT----------TCCSEEEEEEETTCCSSCHHHHHHHHHHHHHT--
T ss_pred HHhhhcccChhHHHHHHhhhhhhccccccchhhhhc----------cCCCCEEEEecCCCcccCHHHHHHHHHHhhhc--
Confidence 00112211 1222222111 222 27889999999999999999999999999865
Q ss_pred CCCCCCCCCCCEEEEEe-CCCCCCCCCchHHHHHHHHHHHHHHHH
Q 004766 681 TSLENSPQTNPIIGRIE-RKAGHGVGLPTQKMIDEAADRYGFMAK 724 (732)
Q Consensus 681 ~~~~~~~~~~~~~~~~~-~~~gH~~~~~~~~~~~~~~~~~~fl~~ 724 (732)
+..+.++++ +++||....... .+....+.+||.+
T Consensus 330 --------~~~~~~~~~~~~~gH~~~~e~p--~~~~~~i~~fl~~ 364 (366)
T 2pl5_A 330 --------DKRVFYVELQSGEGHDSFLLKN--PKQIEILKGFLEN 364 (366)
T ss_dssp --------TCCEEEEEECCCBSSGGGGSCC--HHHHHHHHHHHHC
T ss_pred --------ccCeEEEEeCCCCCcchhhcCh--hHHHHHHHHHHcc
Confidence 556789999 899998754332 2455567788864
|
| >3kxp_A Alpha-(N-acetylaminomethylene)succinic acid hydrolase; alpha/beta hydrolase, PLP degradation, E-2- (acetamidomethylene)succinate; 2.26A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.7e-15 Score=157.13 Aligned_cols=215 Identities=14% Similarity=0.033 Sum_probs=136.5
Q ss_pred cCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCC
Q 004766 459 KDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKK 538 (732)
Q Consensus 459 ~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~ 538 (732)
.+| ..+.+... ++.|+||++||+.+... .|. .+...|+ .||.|+++|+||.|... ....
T Consensus 55 ~~~-~~~~~~~~--------g~~p~vv~lhG~~~~~~--~~~-~~~~~L~-~~~~v~~~D~~G~G~S~--------~~~~ 113 (314)
T 3kxp_A 55 IGR-ITLNVREK--------GSGPLMLFFHGITSNSA--VFE-PLMIRLS-DRFTTIAVDQRGHGLSD--------KPET 113 (314)
T ss_dssp CSS-CEEEEEEE--------CCSSEEEEECCTTCCGG--GGH-HHHHTTT-TTSEEEEECCTTSTTSC--------CCSS
T ss_pred ECC-EEEEEEec--------CCCCEEEEECCCCCCHH--HHH-HHHHHHH-cCCeEEEEeCCCcCCCC--------CCCC
Confidence 367 77766543 23689999999876542 333 3456677 58999999999988653 1223
Q ss_pred ccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCccccccccc------CCCCCc-c-
Q 004766 539 QNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHK------FTIGHA-W- 610 (732)
Q Consensus 539 ~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~------~~~~~~-~- 610 (732)
...++|+.+.+..+++. .+.+++.++|+|+||++++.++.++|++++++|+..|......... ...... +
T Consensus 114 ~~~~~~~~~dl~~~l~~--l~~~~v~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (314)
T 3kxp_A 114 GYEANDYADDIAGLIRT--LARGHAILVGHSLGARNSVTAAAKYPDLVRSVVAIDFTPYIETEALDALEARVNAGSQLFE 191 (314)
T ss_dssp CCSHHHHHHHHHHHHHH--HTSSCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCTTCCHHHHHHHHHHTTTTCSCBS
T ss_pred CCCHHHHHHHHHHHHHH--hCCCCcEEEEECchHHHHHHHHHhChhheeEEEEeCCCCCCCcchhhHHHHHhhhchhhhc
Confidence 34567777776666654 2346999999999999999999999999999999877653321100 000000 0
Q ss_pred ---------ccccCCCCCHHHHHHHHhc---------------------------CcccCCCCCCCCCCCCCCCCCeEEE
Q 004766 611 ---------VSDFGCSEEEEEFYWLIKY---------------------------SPLHNVRRPWEQNPDKPFQYPSTLL 654 (732)
Q Consensus 611 ---------~~~~g~p~~~~~~~~~~~~---------------------------sp~~~~~~~~~~~~~~~~~~~p~Li 654 (732)
...+.. ...+....+... +....+.+ +..|+|+
T Consensus 192 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------i~~P~Li 260 (314)
T 3kxp_A 192 DIKAVEAYLAGRYPN-IPADAIRIRAESGYQPVDGGLRPLASSAAMAQTARGLRSDLVPAYRD----------VTKPVLI 260 (314)
T ss_dssp SHHHHHHHHHHHSTT-SCHHHHHHHHHHSEEEETTEEEESSCHHHHHHHHHHTTSCCHHHHHH----------CCSCEEE
T ss_pred CHHHHHHHHHhhccc-CchHHHHHHhhhhhcccccccccccChhhhhhhccccCcchhhHhhc----------CCCCEEE
Confidence 000000 111111111100 11111222 6889999
Q ss_pred EeeCCCCCCCchHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeCCCCCCCCCchHHHHHHHHHHHHHHH
Q 004766 655 LTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMA 723 (732)
Q Consensus 655 ~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~ 723 (732)
++|++|..+|+..+.++.+.+.. +++++++++||...... .....+.+.+||.
T Consensus 261 i~G~~D~~~~~~~~~~~~~~~~~--------------~~~~~~~g~gH~~~~e~--~~~~~~~i~~fl~ 313 (314)
T 3kxp_A 261 VRGESSKLVSAAALAKTSRLRPD--------------LPVVVVPGADHYVNEVS--PEITLKAITNFID 313 (314)
T ss_dssp EEETTCSSSCHHHHHHHHHHCTT--------------SCEEEETTCCSCHHHHC--HHHHHHHHHHHHH
T ss_pred EecCCCccCCHHHHHHHHHhCCC--------------ceEEEcCCCCCcchhhC--HHHHHHHHHHHHh
Confidence 99999999999988888776542 47788999999864322 2345566777775
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.63 E-value=9.4e-15 Score=156.55 Aligned_cols=300 Identities=12% Similarity=0.050 Sum_probs=178.6
Q ss_pred EEeCCEEEEEEEcCCCCeeEEEEEeCCCCCceEEeCCCCcCCCCCEEEEeEEECCCCcEEEEEEeccCCceEEEEEEECC
Q 004766 87 FKRGNKYFYFHNTGLQPQSVLYVQDSLDAKAKVLLDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIE 166 (732)
Q Consensus 87 ~~~g~~~~~~~~~~~~~~~~l~~r~~~~~~~~~l~D~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~ 166 (732)
+++|.+++|.....+. ..||+.+..+++...+.....-. ...+.|||||++|+|+.... +|+++|+.
T Consensus 44 SpdG~~l~~~~~~~g~--~~l~~~d~~~~~~~~l~~~~~~~------~~~~~~spdg~~l~~~~~~~-----~l~~~d~~ 110 (396)
T 3c5m_A 44 TQDGKKLLFAGDFDGN--RNYYLLNLETQQAVQLTEGKGDN------TFGGFISTDERAFFYVKNEL-----NLMKVDLE 110 (396)
T ss_dssp CTTSCEEEEEECTTSS--CEEEEEETTTTEEEECCCSSCBC------TTTCEECTTSSEEEEEETTT-----EEEEEETT
T ss_pred CCCCCEEEEEEecCCC--ceEEEEECCCCcEEEeecCCCCc------cccceECCCCCEEEEEEcCC-----cEEEEECC
Confidence 3477788888765333 34788776555545544332110 11378999999999997432 79999999
Q ss_pred CCceecccccceeeeeEEEEeCCcEEEEEEecCCCC----CCCCC-CCCcc------cCCcccEEEEEECCCCCCCCeEE
Q 004766 167 DQIVEADALSWFKFSSIAWTHDSKGFFYSRYPAPKE----GKDMD-AGTET------DSNLYHEFYYHFLGTKQSEDILC 235 (732)
Q Consensus 167 ~g~~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~----~~~~~-~~~~~------~~~~~~~v~~~~lgt~~~~~~~v 235 (732)
+|+....... ...|+|||+.|+|........ ...+. ++... .......|+++++.++... .+
T Consensus 111 ~~~~~~~~~~-----~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~--~~ 183 (396)
T 3c5m_A 111 TLEEQVIYTV-----DEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELE--VI 183 (396)
T ss_dssp TCCEEEEEEC-----CTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEE--EE
T ss_pred CCCcEEEEec-----ccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEE--ee
Confidence 9875432211 112888888887743210000 00000 00000 0023457999999876432 33
Q ss_pred EecCCCCeeEEEeEEec-CCcEEEEEEecCCc-ceEEEEEEeCCCCCCCcccccccCCCCCcEEeeecc---cceEEEEE
Q 004766 236 WKDPEHPKYIFSGHVTE-DGQYLVMCIEENCD-PVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGF---DAQYEVIA 310 (732)
Q Consensus 236 ~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~s 310 (732)
... ......+.||| ||++|++....... ...+||+++++++. .+.+.... ......|+
T Consensus 184 ~~~---~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~--------------~~~l~~~~~~~~~~~~~~s 246 (396)
T 3c5m_A 184 HQD---TAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSN--------------VRKIKEHAEGESCTHEFWI 246 (396)
T ss_dssp EEE---SSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCC--------------CEESSCCCTTEEEEEEEEC
T ss_pred ccC---CcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCc--------------eeEeeccCCCccccceEEC
Confidence 332 22456789999 89999888742211 12579999987642 22333211 11223699
Q ss_pred ecCCeEEEEeCCCC-CCceEEEEeCCCCCCceEeccCCCCCceeEEEEec-CCEEEEEEe--------------cCCeeE
Q 004766 311 NDDTVFTFLTNKDA-PKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVN-LNQMIVSYL--------------SDVKYV 374 (732)
Q Consensus 311 ~dg~~l~~~s~~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~-~~~l~~~~~--------------~~g~~~ 374 (732)
|||+.|++.++..+ ....|+++|++++. .+.+.... . .. +.+++ ++.+++... .++...
T Consensus 247 pdg~~l~~~~~~~~~~~~~l~~~d~~~g~-~~~l~~~~-~--~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~ 321 (396)
T 3c5m_A 247 PDGSAMAYVSYFKGQTDRVIYKANPETLE-NEEVMVMP-P--CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPF 321 (396)
T ss_dssp TTSSCEEEEEEETTTCCEEEEEECTTTCC-EEEEEECC-S--EE-EEEECSSSSEEEEEECCC----------CCCCCCE
T ss_pred CCCCEEEEEecCCCCccceEEEEECCCCC-eEEeeeCC-C--CC-CCccCCCCceEEEecCCcceeeccccccccCCCCc
Confidence 99999998876533 23459999998876 34443322 1 22 67776 666555432 124478
Q ss_pred EEEEeCCCCceeeecccccc-----------eeeEeecccCCcEEEEEEecCCCCceEEEEECCCCC
Q 004766 375 LQIRDLKNGSLLHQLPIEIG-----------SVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 430 (732)
Q Consensus 375 l~~~d~~~g~~~~~l~~~~g-----------~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~~ 430 (732)
|+++|+++|+. +.|+.... ....+.+++|++.+++.... ..+..+|.+++.++.
T Consensus 322 i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~-~~~~~l~~~~~~~~~ 386 (396)
T 3c5m_A 322 LYVLNTKAKSA-QKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDF-EGVPAIYIADVPESY 386 (396)
T ss_dssp EEEEETTTTBC-CEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECT-TSSCEEEEEECCTTC
T ss_pred EEEEecccCce-EEccCCCCccccccccccCCCCCceEccCCCeEEEEecC-CCCceEEEEEEcccc
Confidence 99999987764 55553322 13345678999988776544 456789999998774
|
| >3r0v_A Alpha/beta hydrolase fold protein; structural genomics, PSI-biology, protein structure initiati alpha/beta hydrolase; HET: MSE; 1.38A {Sphaerobacter thermophilus} | Back alignment and structure |
|---|
Probab=99.63 E-value=3.8e-15 Score=149.58 Aligned_cols=212 Identities=15% Similarity=0.064 Sum_probs=136.2
Q ss_pred EEEccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhccc
Q 004766 455 FVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGA 534 (732)
Q Consensus 455 ~~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~ 534 (732)
.+.+.|| .++.+... ++.|+||++||+.+... .|. .+...|+ +||.|+++|+||.|.....
T Consensus 6 ~~~~~~g-~~l~~~~~--------g~~~~vv~lHG~~~~~~--~~~-~~~~~l~-~~~~vi~~d~~G~G~S~~~------ 66 (262)
T 3r0v_A 6 TVPSSDG-TPIAFERS--------GSGPPVVLVGGALSTRA--GGA-PLAERLA-PHFTVICYDRRGRGDSGDT------ 66 (262)
T ss_dssp EEECTTS-CEEEEEEE--------ECSSEEEEECCTTCCGG--GGH-HHHHHHT-TTSEEEEECCTTSTTCCCC------
T ss_pred eEEcCCC-cEEEEEEc--------CCCCcEEEECCCCcChH--HHH-HHHHHHh-cCcEEEEEecCCCcCCCCC------
Confidence 3566789 88876654 23578999999877643 233 4456777 8999999999998865321
Q ss_pred ccCCccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCcccccccccCCCC-------
Q 004766 535 LAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIG------- 607 (732)
Q Consensus 535 ~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~------- 607 (732)
...+++|+.+.+..+++. .+ +++.++|+|+||.+++.++.++| +++++|+..|.............
T Consensus 67 ---~~~~~~~~~~~~~~~~~~--l~-~~~~l~G~S~Gg~ia~~~a~~~p-~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~ 139 (262)
T 3r0v_A 67 ---PPYAVEREIEDLAAIIDA--AG-GAAFVFGMSSGAGLSLLAAASGL-PITRLAVFEPPYAVDDSRPPVPPDYQTRLD 139 (262)
T ss_dssp ---SSCCHHHHHHHHHHHHHH--TT-SCEEEEEETHHHHHHHHHHHTTC-CEEEEEEECCCCCCSTTSCCCCTTHHHHHH
T ss_pred ---CCCCHHHHHHHHHHHHHh--cC-CCeEEEEEcHHHHHHHHHHHhCC-CcceEEEEcCCcccccccchhhhHHHHHHH
Confidence 134566666666666654 23 68999999999999999999999 99999998886543211100000
Q ss_pred ------------Cccccc-cCCCCCHHHHHHHHhc------------------------CcccCCCCCCCCCCCCCCCCC
Q 004766 608 ------------HAWVSD-FGCSEEEEEFYWLIKY------------------------SPLHNVRRPWEQNPDKPFQYP 650 (732)
Q Consensus 608 ------------~~~~~~-~g~p~~~~~~~~~~~~------------------------sp~~~~~~~~~~~~~~~~~~~ 650 (732)
..+... .+.+ ++..+.+... .+...+. .+.+
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----------~i~~ 207 (262)
T 3r0v_A 140 ALLAEGRRGDAVTYFMTEGVGVP--PDLVAQMQQAPMWPGMEAVAHTLPYDHAVMGDNTIPTARFA----------SISI 207 (262)
T ss_dssp HHHHTTCHHHHHHHHHHHTSCCC--HHHHHHHHTSTTHHHHHHTGGGHHHHHHHHTTSCCCHHHHT----------TCCS
T ss_pred HHhhccchhhHHHHHhhcccCCC--HHHHHHHHhhhcccchHHHHhhhhhhhhhhhcCCCCHHHcC----------cCCC
Confidence 000001 1111 1111111110 0111222 2788
Q ss_pred eEEEEeeCCCCCCCchHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeCCCCCCCCCchHHHHHHHHHHHHHHH
Q 004766 651 STLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMA 723 (732)
Q Consensus 651 p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~ 723 (732)
|+|+++|.+|..||+..+.++.+.+. ..++++++++||. ..+ .+..+.+.+||.
T Consensus 208 P~lii~G~~D~~~~~~~~~~~~~~~~--------------~~~~~~~~~~gH~-~~p----~~~~~~i~~fl~ 261 (262)
T 3r0v_A 208 PTLVMDGGASPAWIRHTAQELADTIP--------------NARYVTLENQTHT-VAP----DAIAPVLVEFFT 261 (262)
T ss_dssp CEEEEECTTCCHHHHHHHHHHHHHST--------------TEEEEECCCSSSS-CCH----HHHHHHHHHHHC
T ss_pred CEEEEeecCCCCCCHHHHHHHHHhCC--------------CCeEEEecCCCcc-cCH----HHHHHHHHHHHh
Confidence 99999999999999888877776653 2588999999994 221 244556777774
|
| >2qs9_A Retinoblastoma-binding protein 9; B5T overexpressed gene protein, BOG, RBBP9, RBBP10, HR2978, NESG, structural genomics, PSI-2; 1.72A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=5.3e-15 Score=141.79 Aligned_cols=181 Identities=10% Similarity=-0.064 Sum_probs=121.7
Q ss_pred CccEEEEEcCCCCccC-CCCcChhHHHHHHhc-CcEEEEEcccCCCCCchhHHhcccccCCccHHHHHHHHHHHHHHcCC
Q 004766 480 SHPCLLYGYGGFNISV-TPSFSVSRTILMRHL-GAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGY 557 (732)
Q Consensus 480 ~~P~vv~~hG~~~~~~-~~~~~~~~~~~l~~~-G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~ 557 (732)
+.|+||++||+.+... ...|...+...|.++ ||.|+++|+||.+. . ++...++.+++.--
T Consensus 3 ~~p~vv~lHG~~~~~~~~~~~~~~~~~~l~~~~g~~vi~~d~~g~~~--------------~----~~~~~~~~~~~~l~ 64 (194)
T 2qs9_A 3 SPSKAVIVPGNGGGDVTTHGWYGWVKKELEKIPGFQCLAKNMPDPIT--------------A----RESIWLPFMETELH 64 (194)
T ss_dssp CCCEEEEECCSSSSCTTTSTTHHHHHHHHTTSTTCCEEECCCSSTTT--------------C----CHHHHHHHHHHTSC
T ss_pred CCCEEEEECCCCCCCcccchHHHHHHHHHhhccCceEEEeeCCCCCc--------------c----cHHHHHHHHHHHhC
Confidence 5689999999887642 223444345667756 99999999998431 0 22333444444311
Q ss_pred CCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCcccccccccCCCCCccccc-cCCCCCHHHHHHHHhcCcccCCC
Q 004766 558 TQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHAWVSD-FGCSEEEEEFYWLIKYSPLHNVR 636 (732)
Q Consensus 558 ~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~~~~~~-~g~p~~~~~~~~~~~~sp~~~~~ 636 (732)
. .+++.++|+|+||++++.++.++| ++++|+..|......... ..... +..+... +.+ .
T Consensus 65 ~-~~~~~lvG~S~Gg~ia~~~a~~~p--v~~lvl~~~~~~~~~~~~-----~~~~~~~~~~~~~---~~~---------~ 124 (194)
T 2qs9_A 65 C-DEKTIIIGHSSGAIAAMRYAETHR--VYAIVLVSAYTSDLGDEN-----ERASGYFTRPWQW---EKI---------K 124 (194)
T ss_dssp C-CTTEEEEEETHHHHHHHHHHHHSC--CSEEEEESCCSSCTTCHH-----HHHTSTTSSCCCH---HHH---------H
T ss_pred c-CCCEEEEEcCcHHHHHHHHHHhCC--CCEEEEEcCCccccchhh-----hHHHhhhcccccH---HHH---------H
Confidence 1 378999999999999999999999 899998888764321100 00011 1122111 111 1
Q ss_pred CCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeCCCCCCCCCchHHHHHHHH
Q 004766 637 RPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAA 716 (732)
Q Consensus 637 ~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~ 716 (732)
. ..+|+|+++|.+|..||+.++.++++.+ . .++.+++++||....... +.++
T Consensus 125 ~----------~~~p~lii~G~~D~~vp~~~~~~~~~~~-~--------------~~~~~~~~~gH~~~~~~p---~~~~ 176 (194)
T 2qs9_A 125 A----------NCPYIVQFGSTDDPFLPWKEQQEVADRL-E--------------TKLHKFTDCGHFQNTEFH---ELIT 176 (194)
T ss_dssp H----------HCSEEEEEEETTCSSSCHHHHHHHHHHH-T--------------CEEEEESSCTTSCSSCCH---HHHH
T ss_pred h----------hCCCEEEEEeCCCCcCCHHHHHHHHHhc-C--------------CeEEEeCCCCCccchhCH---HHHH
Confidence 1 4579999999999999999999988877 4 278899999999765432 4556
Q ss_pred HHHHHHHHHh
Q 004766 717 DRYGFMAKML 726 (732)
Q Consensus 717 ~~~~fl~~~l 726 (732)
.++.||.+..
T Consensus 177 ~~~~fl~~~~ 186 (194)
T 2qs9_A 177 VVKSLLKVPA 186 (194)
T ss_dssp HHHHHHTCCC
T ss_pred HHHHHHHhhh
Confidence 6778987654
|
| >1uxo_A YDEN protein; hydrolase, A/B hydrolase, esterase, PSI, protein structure initiative, MCSG, midwest center for structural genomics; 1.8A {Bacillus subtilis} SCOP: c.69.1.31 | Back alignment and structure |
|---|
Probab=99.62 E-value=8.4e-15 Score=140.05 Aligned_cols=183 Identities=11% Similarity=0.006 Sum_probs=122.4
Q ss_pred CccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCccHHHHHHHHHHHHHHcCCCC
Q 004766 480 SHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQ 559 (732)
Q Consensus 480 ~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d 559 (732)
..|+||++||..+.... .|...+...|.++||.|+++|+|.++. .+++++.+.+..+++.-
T Consensus 3 g~p~vv~~HG~~~~~~~-~~~~~~~~~l~~~g~~v~~~d~~~~~~---------------~~~~~~~~~~~~~~~~~--- 63 (192)
T 1uxo_A 3 GTKQVYIIHGYRASSTN-HWFPWLKKRLLADGVQADILNMPNPLQ---------------PRLEDWLDTLSLYQHTL--- 63 (192)
T ss_dssp -CCEEEEECCTTCCTTS-TTHHHHHHHHHHTTCEEEEECCSCTTS---------------CCHHHHHHHHHTTGGGC---
T ss_pred CCCEEEEEcCCCCCcch-hHHHHHHHHHHhCCcEEEEecCCCCCC---------------CCHHHHHHHHHHHHHhc---
Confidence 35889999998775431 344444445655999999999993221 14566666666555442
Q ss_pred CCcEEEEecChhHHHHHHHHhhCCC--eeeEEEEcCCcccccccccCCCCCccccccC-CCCCHHHHHHHHhcCcccCCC
Q 004766 560 SRKLCIEGGSNGGLLVGACINQRPD--LFGCALAHVGVMDMLRYHKFTIGHAWVSDFG-CSEEEEEFYWLIKYSPLHNVR 636 (732)
Q Consensus 560 ~~~i~i~G~S~GG~l~~~~~~~~p~--~f~a~v~~~p~~d~~~~~~~~~~~~~~~~~g-~p~~~~~~~~~~~~sp~~~~~ 636 (732)
.+++.++|+|+||++++.++.++|+ +++++|+..|+........ . ...|. .|.+.+ . +.
T Consensus 64 ~~~~~l~G~S~Gg~~a~~~a~~~~~~~~v~~~v~~~~~~~~~~~~~-----~-~~~~~~~~~~~~---~---------~~ 125 (192)
T 1uxo_A 64 HENTYLVAHSLGCPAILRFLEHLQLRAALGGIILVSGFAKSLPTLQ-----M-LDEFTQGSFDHQ---K---------II 125 (192)
T ss_dssp CTTEEEEEETTHHHHHHHHHHTCCCSSCEEEEEEETCCSSCCTTCG-----G-GGGGTCSCCCHH---H---------HH
T ss_pred cCCEEEEEeCccHHHHHHHHHHhcccCCccEEEEeccCCCccccch-----h-hhhhhhcCCCHH---H---------HH
Confidence 5799999999999999999999999 9999999998765422111 0 01121 122211 1 11
Q ss_pred CCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeCCCCCCCCCchHHHHHHHH
Q 004766 637 RPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAA 716 (732)
Q Consensus 637 ~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~ 716 (732)
+ +.+|+|+++|.+|..||+.++.++++.+ . ..+++++++||....... +.+.
T Consensus 126 ~----------~~~P~l~i~g~~D~~~~~~~~~~~~~~~-~--------------~~~~~~~~~gH~~~~~~~---~~~~ 177 (192)
T 1uxo_A 126 E----------SAKHRAVIASKDDQIVPFSFSKDLAQQI-D--------------AALYEVQHGGHFLEDEGF---TSLP 177 (192)
T ss_dssp H----------HEEEEEEEEETTCSSSCHHHHHHHHHHT-T--------------CEEEEETTCTTSCGGGTC---SCCH
T ss_pred h----------hcCCEEEEecCCCCcCCHHHHHHHHHhc-C--------------ceEEEeCCCcCccccccc---ccHH
Confidence 1 4569999999999999999988887766 3 378899999999754321 1122
Q ss_pred HHHHHHHHHhC
Q 004766 717 DRYGFMAKMLG 727 (732)
Q Consensus 717 ~~~~fl~~~l~ 727 (732)
.+.+||.+.+.
T Consensus 178 ~~~~~l~~~l~ 188 (192)
T 1uxo_A 178 IVYDVLTSYFS 188 (192)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 35566665553
|
| >3u1t_A DMMA haloalkane dehalogenase; alpha/beta-hydrolase, hydrolase; 2.20A {Unidentified} | Back alignment and structure |
|---|
Probab=99.62 E-value=3.4e-15 Score=153.75 Aligned_cols=222 Identities=12% Similarity=0.009 Sum_probs=138.8
Q ss_pred CCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCc
Q 004766 460 DGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQ 539 (732)
Q Consensus 460 dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~ 539 (732)
+| .++.+... ++.|+||++||..+... .|......++. +||.|+++|+||.|.... ....
T Consensus 17 ~g-~~l~~~~~--------g~~~~vv~~HG~~~~~~--~~~~~~~~l~~-~g~~v~~~d~~G~G~S~~--------~~~~ 76 (309)
T 3u1t_A 17 EG-ATIAYVDE--------GSGQPVLFLHGNPTSSY--LWRNIIPYVVA-AGYRAVAPDLIGMGDSAK--------PDIE 76 (309)
T ss_dssp TT-EEEEEEEE--------ECSSEEEEECCTTCCGG--GGTTTHHHHHH-TTCEEEEECCTTSTTSCC--------CSSC
T ss_pred CC-eEEEEEEc--------CCCCEEEEECCCcchhh--hHHHHHHHHHh-CCCEEEEEccCCCCCCCC--------CCcc
Confidence 78 88776543 23689999999876643 34444444466 899999999999886432 1123
Q ss_pred cHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCccccccc-----------------c
Q 004766 540 NCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRY-----------------H 602 (732)
Q Consensus 540 ~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~-----------------~ 602 (732)
.+++++.+.+..+++. ...+++.++|+|+||++++.++.++|++++++|+..|....... .
T Consensus 77 ~~~~~~~~~~~~~~~~--~~~~~~~lvGhS~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (309)
T 3u1t_A 77 YRLQDHVAYMDGFIDA--LGLDDMVLVIHDWGSVIGMRHARLNPDRVAAVAFMEALVPPALPMPSYEAMGPQLGPLFRDL 154 (309)
T ss_dssp CCHHHHHHHHHHHHHH--HTCCSEEEEEEEHHHHHHHHHHHHCTTTEEEEEEEEESCTTTCSBSCSGGGHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHH--cCCCceEEEEeCcHHHHHHHHHHhChHhheEEEEeccCCCCccccccccccchhhhHHHHHH
Confidence 4567777666666654 23468999999999999999999999999999988765432200 0
Q ss_pred cCC--------CCCcccc----c--cCCCCCHHHHHHHHh-----------------cCcc--------------cCCCC
Q 004766 603 KFT--------IGHAWVS----D--FGCSEEEEEFYWLIK-----------------YSPL--------------HNVRR 637 (732)
Q Consensus 603 ~~~--------~~~~~~~----~--~g~p~~~~~~~~~~~-----------------~sp~--------------~~~~~ 637 (732)
... ....+.. . ......++..+.+.. .... ..+.
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~- 233 (309)
T 3u1t_A 155 RTADVGEKMVLDGNFFVETILPEMGVVRSLSEAEMAAYRAPFPTRQSRLPTLQWPREVPIGGEPAFAEAEVLKNGEWLM- 233 (309)
T ss_dssp TSTTHHHHHHTTTCHHHHTHHHHTSCSSCCCHHHHHHHHTTCCSTGGGHHHHHHHHHSCBTTBSHHHHHHHHHHHHHHH-
T ss_pred hccchhhhhccccceehhhhcccccccccCCHHHHHHHHHhcCCccccchHHHHHHHhccccccchhhhhhhhhhhhcc-
Confidence 000 0000000 0 001111211111111 0000 0011
Q ss_pred CCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeCCCCCCCCCchHHHHHHHHH
Q 004766 638 PWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAAD 717 (732)
Q Consensus 638 ~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~ 717 (732)
.+..|+|+++|.+|..+|+..+.++.+.+.. ..+.+++++||...... ..+....
T Consensus 234 ---------~i~~P~l~i~G~~D~~~~~~~~~~~~~~~~~--------------~~~~~~~~~gH~~~~~~--p~~~~~~ 288 (309)
T 3u1t_A 234 ---------ASPIPKLLFHAEPGALAPKPVVDYLSENVPN--------------LEVRFVGAGTHFLQEDH--PHLIGQG 288 (309)
T ss_dssp ---------HCCSCEEEEEEEECSSSCHHHHHHHHHHSTT--------------EEEEEEEEESSCHHHHC--HHHHHHH
T ss_pred ---------cCCCCEEEEecCCCCCCCHHHHHHHHhhCCC--------------CEEEEecCCcccchhhC--HHHHHHH
Confidence 2578999999999999999888787776542 35566689999754322 2355667
Q ss_pred HHHHHHHHhCCC
Q 004766 718 RYGFMAKMLGAS 729 (732)
Q Consensus 718 ~~~fl~~~l~~~ 729 (732)
+.+||.++....
T Consensus 289 i~~fl~~~~~~~ 300 (309)
T 3u1t_A 289 IADWLRRNKPHA 300 (309)
T ss_dssp HHHHHHHHCCCC
T ss_pred HHHHHHhcchhh
Confidence 889999886543
|
| >3oos_A Alpha/beta hydrolase family protein; APC67239.0, protein structure initiative, PSI-2, structural midwest center for structural genomics, MCSG; HET: MSE PG4; 1.65A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.62 E-value=3.1e-15 Score=151.33 Aligned_cols=118 Identities=14% Similarity=0.089 Sum_probs=85.8
Q ss_pred cCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCC
Q 004766 459 KDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKK 538 (732)
Q Consensus 459 ~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~ 538 (732)
.+| .++.+... ++.|+||++||..+.... |.. +...|. .||.|+++|.||.|..... ....
T Consensus 10 ~~~-~~~~y~~~--------g~~~~vv~~HG~~~~~~~--~~~-~~~~L~-~~~~vi~~d~~G~G~s~~~------~~~~ 70 (278)
T 3oos_A 10 TPR-GKFEYFLK--------GEGPPLCVTHLYSEYNDN--GNT-FANPFT-DHYSVYLVNLKGCGNSDSA------KNDS 70 (278)
T ss_dssp ETT-EEEEEEEE--------CSSSEEEECCSSEECCTT--CCT-TTGGGG-GTSEEEEECCTTSTTSCCC------SSGG
T ss_pred cCC-ceEEEEec--------CCCCeEEEEcCCCcchHH--HHH-HHHHhh-cCceEEEEcCCCCCCCCCC------CCcc
Confidence 367 67765432 356789999998766543 332 235577 5999999999998864321 0112
Q ss_pred ccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCccc
Q 004766 539 QNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMD 597 (732)
Q Consensus 539 ~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d 597 (732)
..+++|+.+.+..+++. .+.+++.++|+|+||.+++.++.++|++++++|+..|...
T Consensus 71 ~~~~~~~~~~~~~~~~~--l~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~~vl~~~~~~ 127 (278)
T 3oos_A 71 EYSMTETIKDLEAIREA--LYINKWGFAGHSAGGMLALVYATEAQESLTKIIVGGAAAS 127 (278)
T ss_dssp GGSHHHHHHHHHHHHHH--TTCSCEEEEEETHHHHHHHHHHHHHGGGEEEEEEESCCSB
T ss_pred cCcHHHHHHHHHHHHHH--hCCCeEEEEeecccHHHHHHHHHhCchhhCeEEEecCccc
Confidence 33567777777666655 3446899999999999999999999999999999998876
|
| >3i1i_A Homoserine O-acetyltransferase; structural genomics, IDP01610, O-acetyltransfera bacillus anthracis; HET: MSE; 2.44A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=99.62 E-value=2.2e-15 Score=160.36 Aligned_cols=249 Identities=10% Similarity=0.039 Sum_probs=146.6
Q ss_pred EEEEccCCCeeEEEEEEEcCC-CCCCCCccEEEEEcCCCCccCC----------CC-cChhH--HHHHHhcCcEEEEEcc
Q 004766 454 VFVPSKDGSTKIPMFIVSKKN-IKLDGSHPCLLYGYGGFNISVT----------PS-FSVSR--TILMRHLGAVFCIANI 519 (732)
Q Consensus 454 ~~~~s~dG~~~i~~~~~~p~~-~~~~~~~P~vv~~hG~~~~~~~----------~~-~~~~~--~~~l~~~G~~v~~~~~ 519 (732)
..++..+| ..|...|.+..- .....+.|+||++||..+.... .. |.... ...|..+||.|+++|.
T Consensus 15 ~~~~~~~g-~~l~~~i~y~~~g~~~~~~~p~vll~HG~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~l~~~~~~vi~~D~ 93 (377)
T 3i1i_A 15 KEYTFENG-RTIPVQMGYETYGTLNRERSNVILICHYFSATSHAAGKYTAHDEESGWWDGLIGPGKAIDTNQYFVICTDN 93 (377)
T ss_dssp EEEECTTS-CEEEEEEEEEEESCCCTTCCCEEEEECCTTCCSCCSSCSSTTCSSCCTTTTTEETTSSEETTTCEEEEECC
T ss_pred cceeecCC-CEeeeeEEEEeecccCCCCCCEEEEeccccCcchhccccccccccccchhhhcCCCCccccccEEEEEecc
Confidence 35666778 766434444321 1112346999999998877543 11 22211 0223348999999999
Q ss_pred cCCCC--------CchhHHhc--cc---ccCCccHHHHHHHHHHHHHHcCCCCCCcEE-EEecChhHHHHHHHHhhCCCe
Q 004766 520 RGGGE--------YGEEWHKG--GA---LAKKQNCFDDFISASEYLISAGYTQSRKLC-IEGGSNGGLLVGACINQRPDL 585 (732)
Q Consensus 520 rG~g~--------~g~~~~~~--~~---~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~-i~G~S~GG~l~~~~~~~~p~~ 585 (732)
||.|. .|..-... +. ......+++|+.+.+..+++. ...+++. ++|||+||.+++.++.++|++
T Consensus 94 ~G~G~S~G~~~g~~g~~~~~p~~~~~~~~~~~~~~~~~~~~d~~~~l~~--l~~~~~~ilvGhS~Gg~ia~~~a~~~p~~ 171 (377)
T 3i1i_A 94 LCNVQVKNPHVITTGPKSINPKTGDEYAMDFPVFTFLDVARMQCELIKD--MGIARLHAVMGPSAGGMIAQQWAVHYPHM 171 (377)
T ss_dssp TTCSCTTSTTCCCCSTTSBCTTTSSBCGGGSCCCCHHHHHHHHHHHHHH--TTCCCBSEEEEETHHHHHHHHHHHHCTTT
T ss_pred cccccccCCCcccCCCCCCCCCCCCcccCCCCCCCHHHHHHHHHHHHHH--cCCCcEeeEEeeCHhHHHHHHHHHHChHH
Confidence 97743 11110000 00 011234778888888887765 3445785 999999999999999999999
Q ss_pred eeEEEE-cCCcccccc-----------c---cc-C------------------------CCCCcc-ccccCC--------
Q 004766 586 FGCALA-HVGVMDMLR-----------Y---HK-F------------------------TIGHAW-VSDFGC-------- 616 (732)
Q Consensus 586 f~a~v~-~~p~~d~~~-----------~---~~-~------------------------~~~~~~-~~~~g~-------- 616 (732)
++++|+ ..+...... . .. + .....+ ...++.
T Consensus 172 v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (377)
T 3i1i_A 172 VERMIGVITNPQNPIITSVNVAQNAIEAIRLDPSWKGGKYGEEQPMKGLQLANRMMFMNAFDEHFYETTYPRNSIEVEPY 251 (377)
T ss_dssp BSEEEEESCCSBCCHHHHHHTTHHHHHHHHHSGGGGGGCCTTSCCHHHHHHHHHHHHTTSSCHHHHHHHSCCCSSCCGGG
T ss_pred HHHhcccCcCCCcCCchhhHHHHHHHHHHhcCCCccCCccccCCccchHHHHHHHHhhhcCCHHHHHHHhhhhhcccccc
Confidence 999998 444322000 0 00 0 000000 001111
Q ss_pred ----------------------CCCHHHHHH----HHhcCc-------ccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCC
Q 004766 617 ----------------------SEEEEEFYW----LIKYSP-------LHNVRRPWEQNPDKPFQYPSTLLLTADHDDRV 663 (732)
Q Consensus 617 ----------------------p~~~~~~~~----~~~~sp-------~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v 663 (732)
..+...+.. +..+.+ ...+. .+..|+||++|.+|..|
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----------~i~~Pvlii~G~~D~~~ 321 (377)
T 3i1i_A 252 EKVSSLTSFEKEINKLTYRSIELVDANSWMYTAKAVLLHDIAHGFSSLEEALS----------NVEANVLMIPCKQDLLQ 321 (377)
T ss_dssp TCTTCCCHHHHHHHHHHHHTTTTCCHHHHHHHHHHHHHCBTTTTSSCHHHHHH----------TCCSEEEEECBTTCSSS
T ss_pred ccccchhHHHHHHHHHHhhhhcccCHHHHHHHHHHHhhcccccccCCHHHHHh----------hCCCCEEEEecCCcccc
Confidence 001111110 111111 01112 27789999999999999
Q ss_pred CchHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeCC-CCCCCCCchHHHHHHHHHHHHHHHHHhC
Q 004766 664 VPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERK-AGHGVGLPTQKMIDEAADRYGFMAKMLG 727 (732)
Q Consensus 664 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 727 (732)
|+..+.++++.++.. +..++++++++ +||....... .+..+.+.+||.+++.
T Consensus 322 ~~~~~~~~~~~~~~~----------g~~~~~~~i~~~~gH~~~~e~p--~~~~~~i~~fl~~~~~ 374 (377)
T 3i1i_A 322 PSRYNYKMVDLLQKQ----------GKYAEVYEIESINGHMAGVFDI--HLFEKKVYEFLNRKVS 374 (377)
T ss_dssp CTHHHHHHHHHHHHT----------TCCEEECCBCCTTGGGHHHHCG--GGTHHHHHHHHHSCCS
T ss_pred CHHHHHHHHHHHHhc----------CCCceEEEcCCCCCCcchhcCH--HHHHHHHHHHHHhhhh
Confidence 999999999999875 56689999998 9997543222 2345567889987654
|
| >1imj_A CIB, CCG1-interacting factor B; alpha/beta hydrolase, CCG1 interactor; 2.20A {Homo sapiens} SCOP: c.69.1.23 | Back alignment and structure |
|---|
Probab=99.62 E-value=6.3e-16 Score=150.08 Aligned_cols=192 Identities=11% Similarity=-0.010 Sum_probs=129.7
Q ss_pred cCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChh-HHHHHHhcCcEEEEEcccCCCCCchhHHhcccccC
Q 004766 459 KDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVS-RTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAK 537 (732)
Q Consensus 459 ~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~-~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~ 537 (732)
.+| .++.+..+.|++ +++.|+||++||+.+... .|... ....|+++||.|+++|+||.|........ . .
T Consensus 14 ~~g-~~l~~~~~~p~~---~~~~~~vv~~hG~~~~~~--~~~~~~~~~~l~~~G~~v~~~d~~g~g~s~~~~~~---~-~ 83 (210)
T 1imj_A 14 VQG-QALFFREALPGS---GQARFSVLLLHGIRFSSE--TWQNLGTLHRLAQAGYRAVAIDLPGLGHSKEAAAP---A-P 83 (210)
T ss_dssp ETT-EEECEEEEECSS---SCCSCEEEECCCTTCCHH--HHHHHTHHHHHHHTTCEEEEECCTTSGGGTTSCCS---S-C
T ss_pred eCC-eEEEEEEeCCCC---CCCCceEEEECCCCCccc--eeecchhHHHHHHCCCeEEEecCCCCCCCCCCCCc---c-h
Confidence 388 999999998865 246899999999876542 33332 34556669999999999997643221100 0 0
Q ss_pred CccHH--HHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCcccccccccCCCCCccccccC
Q 004766 538 KQNCF--DDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHAWVSDFG 615 (732)
Q Consensus 538 ~~~~~--~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~~~~~~~g 615 (732)
-.... +|+.+.++.+ +.++++++|+|+||.++..++.++|++++++|+..|..... +
T Consensus 84 ~~~~~~~~~~~~~~~~~------~~~~~~l~G~S~Gg~~a~~~a~~~~~~v~~~v~~~~~~~~~----------~----- 142 (210)
T 1imj_A 84 IGELAPGSFLAAVVDAL------ELGPPVVISPSLSGMYSLPFLTAPGSQLPGFVPVAPICTDK----------I----- 142 (210)
T ss_dssp TTSCCCTHHHHHHHHHH------TCCSCEEEEEGGGHHHHHHHHTSTTCCCSEEEEESCSCGGG----------S-----
T ss_pred hhhcchHHHHHHHHHHh------CCCCeEEEEECchHHHHHHHHHhCccccceEEEeCCCcccc----------c-----
Confidence 01111 4555555544 34689999999999999999999999999999988864310 0
Q ss_pred CCCCHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhcCCCCCCCCCCCEEEE
Q 004766 616 CSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGR 695 (732)
Q Consensus 616 ~p~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 695 (732)
.... +.. +..|+|+++|.+|. +++..+.++ +.+ ....+.
T Consensus 143 ---~~~~------------~~~----------~~~p~l~i~g~~D~-~~~~~~~~~-~~~--------------~~~~~~ 181 (210)
T 1imj_A 143 ---NAAN------------YAS----------VKTPALIVYGDQDP-MGQTSFEHL-KQL--------------PNHRVL 181 (210)
T ss_dssp ---CHHH------------HHT----------CCSCEEEEEETTCH-HHHHHHHHH-TTS--------------SSEEEE
T ss_pred ---cchh------------hhh----------CCCCEEEEEcCccc-CCHHHHHHH-hhC--------------CCCCEE
Confidence 0111 112 56799999999999 987776655 322 246889
Q ss_pred EeCCCCCCCCCchHHHHHHHHHHHHHHHH
Q 004766 696 IERKAGHGVGLPTQKMIDEAADRYGFMAK 724 (732)
Q Consensus 696 ~~~~~gH~~~~~~~~~~~~~~~~~~fl~~ 724 (732)
+++++||....... ....+.+.+||.+
T Consensus 182 ~~~~~~H~~~~~~~--~~~~~~i~~fl~~ 208 (210)
T 1imj_A 182 IMKGAGHPCYLDKP--EEWHTGLLDFLQG 208 (210)
T ss_dssp EETTCCTTHHHHCH--HHHHHHHHHHHHT
T ss_pred EecCCCcchhhcCH--HHHHHHHHHHHHh
Confidence 99999998532221 2345566777754
|
| >1brt_A Bromoperoxidase A2; haloperoxidase, oxidoreductase, alpha/beta hydrolase fold, mutant M99T; 1.50A {Streptomyces aureofaciens} SCOP: c.69.1.12 PDB: 1bro_A 1a8u_A 1a7u_A | Back alignment and structure |
|---|
Probab=99.61 E-value=1.8e-14 Score=146.52 Aligned_cols=226 Identities=13% Similarity=0.028 Sum_probs=131.1
Q ss_pred ccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccC
Q 004766 458 SKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAK 537 (732)
Q Consensus 458 s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~ 537 (732)
+.+| .++.+... +..|.||++||..+... .|.. ....|.++||.|+++|.||.|..... .
T Consensus 9 ~~~g-~~l~y~~~--------g~g~pvvllHG~~~~~~--~~~~-~~~~L~~~g~~vi~~D~~G~G~S~~~--------~ 68 (277)
T 1brt_A 9 NSTS-IDLYYEDH--------GTGQPVVLIHGFPLSGH--SWER-QSAALLDAGYRVITYDRRGFGQSSQP--------T 68 (277)
T ss_dssp TTEE-EEEEEEEE--------CSSSEEEEECCTTCCGG--GGHH-HHHHHHHTTCEEEEECCTTSTTSCCC--------S
T ss_pred cCCC-cEEEEEEc--------CCCCeEEEECCCCCcHH--HHHH-HHHHHhhCCCEEEEeCCCCCCCCCCC--------C
Confidence 4577 77765433 12345999999876542 3443 34556658999999999998865321 1
Q ss_pred CccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCC-eeeEEEEcCCccccccc-ccCCCC--------
Q 004766 538 KQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPD-LFGCALAHVGVMDMLRY-HKFTIG-------- 607 (732)
Q Consensus 538 ~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~-~f~a~v~~~p~~d~~~~-~~~~~~-------- 607 (732)
...+++++.+.+..+++. .+.+++.++|+|+||.+++.++.++|+ +++++|+..|....... .....+
T Consensus 69 ~~~~~~~~a~dl~~~l~~--l~~~~~~lvGhS~Gg~va~~~a~~~p~~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (277)
T 1brt_A 69 TGYDYDTFAADLNTVLET--LDLQDAVLVGFSTGTGEVARYVSSYGTARIAKVAFLASLEPFLLKTDDNPDGAAPQEFFD 146 (277)
T ss_dssp SCCSHHHHHHHHHHHHHH--HTCCSEEEEEEGGGHHHHHHHHHHHCSTTEEEEEEESCCCSCCBCBTTBTTCSBCHHHHH
T ss_pred CCccHHHHHHHHHHHHHH--hCCCceEEEEECccHHHHHHHHHHcCcceEEEEEEecCcCccccccccCccccccHHHHH
Confidence 123455555544444443 234689999999999999999999999 99999988764321100 000000
Q ss_pred ----------Cccc----c-cc------CCCCCHHHHHHHHh----cCc------ccCCCCCCCCCCCCCCCCCeEEEEe
Q 004766 608 ----------HAWV----S-DF------GCSEEEEEFYWLIK----YSP------LHNVRRPWEQNPDKPFQYPSTLLLT 656 (732)
Q Consensus 608 ----------~~~~----~-~~------g~p~~~~~~~~~~~----~sp------~~~~~~~~~~~~~~~~~~~p~Li~~ 656 (732)
..+. . .+ +....++..+.+.. .++ +..... +..+....+..|+|+++
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~i~~P~lii~ 224 (277)
T 1brt_A 147 GIVAAVKADRYAFYTGFFNDFYNLDENLGTRISEEAVRNSWNTAASGGFFAAAAAPTTWYT--DFRADIPRIDVPALILH 224 (277)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHTTHHHHBTTTBCHHHHHHHHHHHHHSCHHHHHHGGGGTTC--CCTTTGGGCCSCEEEEE
T ss_pred HHHHHHhcCchhhHHHHHHHHhhccccccccCCHHHHHHHHHHHhccchHHHHHHHHHHhc--cchhhcccCCCCeEEEe
Confidence 0000 0 01 11122222211110 000 000000 00011124789999999
Q ss_pred eCCCCCCCchHH-HHHHHHHHHhhcCCCCCCCCCCCEEEEEeCCCCCCCCCchHHHHHHHHHHHHHHH
Q 004766 657 ADHDDRVVPLHS-LKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMA 723 (732)
Q Consensus 657 g~~D~~v~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~ 723 (732)
|.+|..+|+..+ .++.+.+.. .++++++++||...... ..+..+.+.+||.
T Consensus 225 G~~D~~~~~~~~~~~~~~~~~~--------------~~~~~i~~~gH~~~~e~--p~~~~~~i~~fl~ 276 (277)
T 1brt_A 225 GTGDRTLPIENTARVFHKALPS--------------AEYVEVEGAPHGLLWTH--AEEVNTALLAFLA 276 (277)
T ss_dssp ETTCSSSCGGGTHHHHHHHCTT--------------SEEEEETTCCTTHHHHT--HHHHHHHHHHHHH
T ss_pred cCCCccCChHHHHHHHHHHCCC--------------CcEEEeCCCCcchhhhC--HHHHHHHHHHHHh
Confidence 999999999887 666655432 47888999999864322 2345556777874
|
| >1a8s_A Chloroperoxidase F; haloperoxidase, oxidoreductase, propionate complex; 1.80A {Pseudomonas fluorescens} SCOP: c.69.1.12 | Back alignment and structure |
|---|
Probab=99.61 E-value=3.4e-14 Score=143.96 Aligned_cols=118 Identities=22% Similarity=0.182 Sum_probs=81.8
Q ss_pred EEccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccc
Q 004766 456 VPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGAL 535 (732)
Q Consensus 456 ~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~ 535 (732)
+++.|| .++.+... +..|.||++||..+... .|... ...|.++||.|+++|.||.|.....
T Consensus 3 ~~~~~g-~~l~y~~~--------g~~~~vvllHG~~~~~~--~~~~~-~~~L~~~g~~vi~~D~~G~G~S~~~------- 63 (273)
T 1a8s_A 3 FTTRDG-TQIYYKDW--------GSGQPIVFSHGWPLNAD--SWESQ-MIFLAAQGYRVIAHDRRGHGRSSQP------- 63 (273)
T ss_dssp EECTTS-CEEEEEEE--------SCSSEEEEECCTTCCGG--GGHHH-HHHHHHTTCEEEEECCTTSTTSCCC-------
T ss_pred EecCCC-cEEEEEEc--------CCCCEEEEECCCCCcHH--HHhhH-HhhHhhCCcEEEEECCCCCCCCCCC-------
Confidence 567788 88765433 23478999999876542 34443 3455558999999999998865321
Q ss_pred cCCccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhC-CCeeeEEEEcCCc
Q 004766 536 AKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQR-PDLFGCALAHVGV 595 (732)
Q Consensus 536 ~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~-p~~f~a~v~~~p~ 595 (732)
....+++++.+.+..+++. .+.+++.++|+|+||++++.++.++ |++++++|+..+.
T Consensus 64 -~~~~~~~~~~~dl~~~l~~--l~~~~~~lvGhS~Gg~ia~~~a~~~~p~~v~~lvl~~~~ 121 (273)
T 1a8s_A 64 -WSGNDMDTYADDLAQLIEH--LDLRDAVLFGFSTGGGEVARYIGRHGTARVAKAGLISAV 121 (273)
T ss_dssp -SSCCSHHHHHHHHHHHHHH--TTCCSEEEEEETHHHHHHHHHHHHHCSTTEEEEEEESCC
T ss_pred -CCCCCHHHHHHHHHHHHHH--hCCCCeEEEEeChHHHHHHHHHHhcCchheeEEEEEccc
Confidence 1123455555555555543 2346899999999999998866665 9999999887653
|
| >1a8q_A Bromoperoxidase A1; haloperoxidase, oxidoreductase; 1.75A {Streptomyces aureofaciens} SCOP: c.69.1.12 | Back alignment and structure |
|---|
Probab=99.61 E-value=6.3e-14 Score=142.10 Aligned_cols=223 Identities=14% Similarity=0.075 Sum_probs=131.6
Q ss_pred EEccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccc
Q 004766 456 VPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGAL 535 (732)
Q Consensus 456 ~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~ 535 (732)
+++.|| .++.+... +..|.||++||..+... .|... ...|.++||.|+++|.||.|.....
T Consensus 3 ~~~~~g-~~l~y~~~--------g~g~~vvllHG~~~~~~--~w~~~-~~~l~~~g~~vi~~D~~G~G~S~~~------- 63 (274)
T 1a8q_A 3 CTTRDG-VEIFYKDW--------GQGRPVVFIHGWPLNGD--AWQDQ-LKAVVDAGYRGIAHDRRGHGHSTPV------- 63 (274)
T ss_dssp EECTTS-CEEEEEEE--------CSSSEEEEECCTTCCGG--GGHHH-HHHHHHTTCEEEEECCTTSTTSCCC-------
T ss_pred EEccCC-CEEEEEec--------CCCceEEEECCCcchHH--HHHHH-HHHHHhCCCeEEEEcCCCCCCCCCC-------
Confidence 567788 88765433 23478999999876543 34433 3445558999999999998865321
Q ss_pred cCCccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhC-CCeeeEEEEcCCcccccccc-cCCCC--Cc--
Q 004766 536 AKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQR-PDLFGCALAHVGVMDMLRYH-KFTIG--HA-- 609 (732)
Q Consensus 536 ~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~-p~~f~a~v~~~p~~d~~~~~-~~~~~--~~-- 609 (732)
....+++++.+.+..+++. .+.+++.++|||+||++++.++.++ |++++++|+..|........ ....+ ..
T Consensus 64 -~~~~~~~~~~~dl~~~l~~--l~~~~~~lvGhS~Gg~ia~~~a~~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~ 140 (274)
T 1a8q_A 64 -WDGYDFDTFADDLNDLLTD--LDLRDVTLVAHSMGGGELARYVGRHGTGRLRSAVLLSAIPPVMIKSDKNPDGVPDEVF 140 (274)
T ss_dssp -SSCCSHHHHHHHHHHHHHH--TTCCSEEEEEETTHHHHHHHHHHHHCSTTEEEEEEESCCCSCCBCCSSCTTSBCHHHH
T ss_pred -CCCCcHHHHHHHHHHHHHH--cCCCceEEEEeCccHHHHHHHHHHhhhHheeeeeEecCCCccccccccCcccchHHHH
Confidence 1123455555555555543 2346899999999999998877665 99999998877542110000 00000 00
Q ss_pred -------------cc-----cccC-----CCCCHHHHHH----------------HHhc---CcccCCCCCCCCCCCCCC
Q 004766 610 -------------WV-----SDFG-----CSEEEEEFYW----------------LIKY---SPLHNVRRPWEQNPDKPF 647 (732)
Q Consensus 610 -------------~~-----~~~g-----~p~~~~~~~~----------------~~~~---sp~~~~~~~~~~~~~~~~ 647 (732)
+. ..++ ....++..+. +..+ +....+. .
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----------~ 210 (274)
T 1a8q_A 141 DALKNGVLTERSQFWKDTAEGFFSANRPGNKVTQGNKDAFWYMAMAQTIEGGVRCVDAFGYTDFTEDLK----------K 210 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTTSTTCCCCHHHHHHHHHHHTTSCHHHHHHHHHHHHHCCCHHHHT----------T
T ss_pred HHHHHHhhccHHHHHHHhcccccccccccccccHHHHHHHHHHhhhcChHHHHHHHhhhhcCcHHHHhh----------c
Confidence 00 0011 0011111111 1111 1111222 2
Q ss_pred CCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeCCCCCCCCCchHHHHHHHHHHHHHHH
Q 004766 648 QYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMA 723 (732)
Q Consensus 648 ~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~ 723 (732)
+..|+|+++|.+|..||+.+..+..+++. ...++++++++||.......+..+..+.+.+||.
T Consensus 211 i~~P~lii~G~~D~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~gH~~~~e~~~p~~~~~~i~~fl~ 273 (274)
T 1a8q_A 211 FDIPTLVVHGDDDQVVPIDATGRKSAQII-------------PNAELKVYEGSSHGIAMVPGDKEKFNRDLLEFLN 273 (274)
T ss_dssp CCSCEEEEEETTCSSSCGGGTHHHHHHHS-------------TTCEEEEETTCCTTTTTSTTHHHHHHHHHHHHHT
T ss_pred CCCCEEEEecCcCCCCCcHHHHHHHHhhC-------------CCceEEEECCCCCceecccCCHHHHHHHHHHHhc
Confidence 78999999999999999986555444332 2358899999999887541112345566778874
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.61 E-value=7.7e-12 Score=133.67 Aligned_cols=242 Identities=11% Similarity=0.060 Sum_probs=158.0
Q ss_pred EEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCccc
Q 004766 134 LIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETD 213 (732)
Q Consensus 134 ~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~ 213 (732)
+..++|||||++|+++...+ .+|++||+.+++.+...........++|+|||+.|+++..
T Consensus 34 ~~~~~~s~dg~~l~~~~~~d----~~i~v~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~---------------- 93 (391)
T 1l0q_A 34 PMGAVISPDGTKVYVANAHS----NDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNM---------------- 93 (391)
T ss_dssp EEEEEECTTSSEEEEEEGGG----TEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEET----------------
T ss_pred cceEEECCCCCEEEEECCCC----CeEEEEECCCCeEEEEEECCCCccceEECCCCCEEEEEEC----------------
Confidence 46889999999987775333 3799999999986543222224578999999999988742
Q ss_pred CCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCCC
Q 004766 214 SNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLL 293 (732)
Q Consensus 214 ~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~ 293 (732)
....|+++++.++.. +..+... .....++|+|||++|++.... ...|+++|+.++.
T Consensus 94 --~~~~v~v~d~~~~~~--~~~~~~~---~~~~~~~~s~dg~~l~~~~~~----~~~v~~~d~~~~~------------- 149 (391)
T 1l0q_A 94 --ASSTLSVIDTTSNTV--AGTVKTG---KSPLGLALSPDGKKLYVTNNG----DKTVSVINTVTKA------------- 149 (391)
T ss_dssp --TTTEEEEEETTTTEE--EEEEECS---SSEEEEEECTTSSEEEEEETT----TTEEEEEETTTTE-------------
T ss_pred --CCCEEEEEECCCCeE--EEEEeCC---CCcceEEECCCCCEEEEEeCC----CCEEEEEECCCCc-------------
Confidence 224699999987542 2223222 234688999999999776532 2468999987642
Q ss_pred CcEEeeecccceEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecCC-EEEEEEecCCe
Q 004766 294 PFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLN-QMIVSYLSDVK 372 (732)
Q Consensus 294 ~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~-~l~~~~~~~g~ 372 (732)
....+..+.......|+|+|+.+++.... ...|+.+|+.++. ....+... ..+..+.+++++ .+++.......
T Consensus 150 ~~~~~~~~~~~~~~~~~~dg~~l~~~~~~---~~~v~~~d~~~~~-~~~~~~~~--~~~~~~~~~~~g~~l~~~~~~~~~ 223 (391)
T 1l0q_A 150 VINTVSVGRSPKGIAVTPDGTKVYVANFD---SMSISVIDTVTNS-VIDTVKVE--AAPSGIAVNPEGTKAYVTNVDKYF 223 (391)
T ss_dssp EEEEEECCSSEEEEEECTTSSEEEEEETT---TTEEEEEETTTTE-EEEEEECS--SEEEEEEECTTSSEEEEEEECSSC
T ss_pred EEEEEecCCCcceEEECCCCCEEEEEeCC---CCEEEEEECCCCe-EEEEEecC--CCccceEECCCCCEEEEEecCcCC
Confidence 12222222222233589999988766543 3479999998875 33334433 456778888754 45555542234
Q ss_pred eEEEEEeCCCCceeeecccccceeeEeecccCCcEEEEEEecCCCCceEEEEECCCC
Q 004766 373 YVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTE 429 (732)
Q Consensus 373 ~~l~~~d~~~g~~~~~l~~~~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~ 429 (732)
..|++||+.+++.+..+..+. .+..+.++++++.++++.+. -..++.+|+.++
T Consensus 224 ~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~s~~~---d~~v~v~d~~~~ 276 (391)
T 1l0q_A 224 NTVSMIDTGTNKITARIPVGP-DPAGIAVTPDGKKVYVALSF---XNTVSVIDTATN 276 (391)
T ss_dssp CEEEEEETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEETT---TTEEEEEETTTT
T ss_pred CcEEEEECCCCeEEEEEecCC-CccEEEEccCCCEEEEEcCC---CCEEEEEECCCC
Confidence 689999998787655555433 34567778888877665432 256777777655
|
| >3v48_A Aminohydrolase, putative aminoacrylate hydrolase RUTD; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.10A {Escherichia coli SE11} | Back alignment and structure |
|---|
Probab=99.60 E-value=5.1e-15 Score=149.97 Aligned_cols=209 Identities=12% Similarity=0.070 Sum_probs=132.6
Q ss_pred CCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCccHHHHHHHHHHHHHHcCCC
Q 004766 479 GSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYT 558 (732)
Q Consensus 479 ~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~ 558 (732)
+..|+||++||..+... .|.. ....|+ ++|.|+++|.||.|.... ......+++++.+.+..+++. .
T Consensus 13 ~~~~~vvllHG~~~~~~--~w~~-~~~~L~-~~~~vi~~Dl~G~G~S~~-------~~~~~~~~~~~a~dl~~~l~~--l 79 (268)
T 3v48_A 13 ADAPVVVLISGLGGSGS--YWLP-QLAVLE-QEYQVVCYDQRGTGNNPD-------TLAEDYSIAQMAAELHQALVA--A 79 (268)
T ss_dssp TTCCEEEEECCTTCCGG--GGHH-HHHHHH-TTSEEEECCCTTBTTBCC-------CCCTTCCHHHHHHHHHHHHHH--T
T ss_pred CCCCEEEEeCCCCccHH--HHHH-HHHHHh-hcCeEEEECCCCCCCCCC-------CccccCCHHHHHHHHHHHHHH--c
Confidence 35689999999876542 4444 345677 789999999999885321 111234677777777776665 2
Q ss_pred CCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCccccccccc------------------------CCCCCcccccc
Q 004766 559 QSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHK------------------------FTIGHAWVSDF 614 (732)
Q Consensus 559 d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~------------------------~~~~~~~~~~~ 614 (732)
..+++.++|+|+||.+++.++.++|++++++|+..+......... +.....|....
T Consensus 80 ~~~~~~lvGhS~GG~ia~~~A~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (268)
T 3v48_A 80 GIEHYAVVGHALGALVGMQLALDYPASVTVLISVNGWLRINAHTRRCFQVRERLLYSGGAQAWVEAQPLFLYPADWMAAR 159 (268)
T ss_dssp TCCSEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCSBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHTT
T ss_pred CCCCeEEEEecHHHHHHHHHHHhChhhceEEEEeccccccchhhhHHHHHHHHHHhccchhhhhhhhhhhcCchhhhhcc
Confidence 336899999999999999999999999999998776432110000 00000010000
Q ss_pred -------------CCCCCHHH---HHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHh
Q 004766 615 -------------GCSEEEEE---FYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYV 678 (732)
Q Consensus 615 -------------g~p~~~~~---~~~~~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~ 678 (732)
..+..... +..+...+....+. .+..|+||++|++|..+|+..+.++.+.+..
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~----------~i~~P~Lii~G~~D~~~p~~~~~~l~~~~p~- 228 (268)
T 3v48_A 160 APRLEAEDALALAHFQGKNNLLRRLNALKRADFSHHAD----------RIRCPVQIICASDDLLVPTACSSELHAALPD- 228 (268)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCBCTTTGG----------GCCSCEEEEEETTCSSSCTHHHHHHHHHCSS-
T ss_pred cccchhhHHHHHhhcCchhHHHHHHHHHhccchhhhhh----------cCCCCeEEEEeCCCcccCHHHHHHHHHhCCc-
Confidence 00000000 11112222112222 3889999999999999999988888766542
Q ss_pred hcCCCCCCCCCCCEEEEEeCCCCCCCCCchHHHHHHHHHHHHHHHHHh
Q 004766 679 LCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKML 726 (732)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l 726 (732)
..+.+++++||....... ....+.+.+||.+.+
T Consensus 229 -------------~~~~~~~~~GH~~~~e~p--~~~~~~i~~fl~~~~ 261 (268)
T 3v48_A 229 -------------SQKMVMPYGGHACNVTDP--ETFNALLLNGLASLL 261 (268)
T ss_dssp -------------EEEEEESSCCTTHHHHCH--HHHHHHHHHHHHHHH
T ss_pred -------------CeEEEeCCCCcchhhcCH--HHHHHHHHHHHHHhc
Confidence 478889999998643322 345567788988754
|
| >3e0x_A Lipase-esterase related protein; APC60309, clostridium acetobutylicum ATCC 824, structural genomics, PSI-2; HET: MSE; 1.45A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.59 E-value=5.6e-15 Score=146.49 Aligned_cols=186 Identities=13% Similarity=0.069 Sum_probs=121.0
Q ss_pred CCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCccHHHHHHHHHHHHHH----
Q 004766 479 GSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLIS---- 554 (732)
Q Consensus 479 ~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~---- 554 (732)
++.|+||++||..+.... |. . ...|. +||.|+++|+||.|... .....+++++.+.+..+++
T Consensus 14 ~~~~~vv~~hG~~~~~~~--~~-~-~~~l~-~g~~v~~~d~~g~g~s~---------~~~~~~~~~~~~~~~~~~~~~~~ 79 (245)
T 3e0x_A 14 KSPNTLLFVHGSGCNLKI--FG-E-LEKYL-EDYNCILLDLKGHGESK---------GQCPSTVYGYIDNVANFITNSEV 79 (245)
T ss_dssp TCSCEEEEECCTTCCGGG--GT-T-GGGGC-TTSEEEEECCTTSTTCC---------SCCCSSHHHHHHHHHHHHHHCTT
T ss_pred CCCCEEEEEeCCcccHHH--HH-H-HHHHH-hCCEEEEecCCCCCCCC---------CCCCcCHHHHHHHHHHHHHhhhh
Confidence 357899999998776543 33 2 23355 89999999999988643 1123356666666665551
Q ss_pred cCCCCCCcEEEEecChhHHHHHHHHhh-CCCeeeEEEEcCCccccccccc--------CC------------CCCccccc
Q 004766 555 AGYTQSRKLCIEGGSNGGLLVGACINQ-RPDLFGCALAHVGVMDMLRYHK--------FT------------IGHAWVSD 613 (732)
Q Consensus 555 ~~~~d~~~i~i~G~S~GG~l~~~~~~~-~p~~f~a~v~~~p~~d~~~~~~--------~~------------~~~~~~~~ 613 (732)
+.... ++.++|+|+||.++..++.+ +|+ ++++|+..|..+...... .. ....+...
T Consensus 80 ~~~~~--~~~l~G~S~Gg~~a~~~a~~~~p~-v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (245)
T 3e0x_A 80 TKHQK--NITLIGYSMGGAIVLGVALKKLPN-VRKVVSLSGGARFDKLDKDFMEKIYHNQLDNNYLLECIGGIDNPLSEK 156 (245)
T ss_dssp TTTCS--CEEEEEETHHHHHHHHHHTTTCTT-EEEEEEESCCSBCTTSCHHHHHHHHTTCCCHHHHHHHHTCSCSHHHHH
T ss_pred HhhcC--ceEEEEeChhHHHHHHHHHHhCcc-ccEEEEecCCCccccccHHHHHHHHHHHHHhhcCcccccccchHHHHH
Confidence 11223 89999999999999999999 999 999999998776521110 00 00000000
Q ss_pred c-CC-CCCHHH----HHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhcCCCCCCC
Q 004766 614 F-GC-SEEEEE----FYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSP 687 (732)
Q Consensus 614 ~-g~-p~~~~~----~~~~~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~ 687 (732)
+ .. ..++.. +..+..++....+.+ +..|+|+++|.+|..||+..+.++++.+.
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~P~l~i~g~~D~~~~~~~~~~~~~~~~----------- 215 (245)
T 3e0x_A 157 YFETLEKDPDIMINDLIACKLIDLVDNLKN----------IDIPVKAIVAKDELLTLVEYSEIIKKEVE----------- 215 (245)
T ss_dssp HHTTSCSSHHHHHHHHHHHHHCBCGGGGGG----------CCSCEEEEEETTCSSSCHHHHHHHHHHSS-----------
T ss_pred HHHHHhcCcHHHHHHHHHhccccHHHHHHh----------CCCCEEEEEeCCCCCCCHHHHHHHHHHcC-----------
Confidence 0 00 012211 122233344444444 78899999999999999998877776643
Q ss_pred CCCCEEEEEeCCCCCCCC
Q 004766 688 QTNPIIGRIERKAGHGVG 705 (732)
Q Consensus 688 ~~~~~~~~~~~~~gH~~~ 705 (732)
.+++.+++++||...
T Consensus 216 ---~~~~~~~~~~gH~~~ 230 (245)
T 3e0x_A 216 ---NSELKIFETGKHFLL 230 (245)
T ss_dssp ---SEEEEEESSCGGGHH
T ss_pred ---CceEEEeCCCCcceE
Confidence 268899999999854
|
| >3dqz_A Alpha-hydroxynitrIle lyase-like protein; A/B-hydrloase fold, cyanogenesis; 2.50A {Arabidopsis thaliana} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=99.59 E-value=1.6e-14 Score=144.80 Aligned_cols=215 Identities=7% Similarity=-0.023 Sum_probs=130.8
Q ss_pred ccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCccHHHHHHHHHHHHHHcCCCCC
Q 004766 481 HPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQS 560 (732)
Q Consensus 481 ~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~ 560 (732)
.|+||++||..+... .|... ...|+++||.|+++|.||.|...... ....+++++.+.+..+++.-.. .
T Consensus 4 g~~vv~lHG~~~~~~--~~~~~-~~~l~~~g~~vi~~D~~G~G~S~~~~-------~~~~~~~~~~~~l~~~l~~l~~-~ 72 (258)
T 3dqz_A 4 KHHFVLVHNAYHGAW--IWYKL-KPLLESAGHRVTAVELAASGIDPRPI-------QAVETVDEYSKPLIETLKSLPE-N 72 (258)
T ss_dssp CCEEEEECCTTCCGG--GGTTH-HHHHHHTTCEEEEECCTTSTTCSSCG-------GGCCSHHHHHHHHHHHHHTSCT-T
T ss_pred CCcEEEECCCCCccc--cHHHH-HHHHHhCCCEEEEecCCCCcCCCCCC-------CccccHHHhHHHHHHHHHHhcc-c
Confidence 389999999887643 34443 45566589999999999988653221 1124566666666655554211 3
Q ss_pred CcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCccccccccc------C-CCCCcccc---------------------
Q 004766 561 RKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHK------F-TIGHAWVS--------------------- 612 (732)
Q Consensus 561 ~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~------~-~~~~~~~~--------------------- 612 (732)
+++.++|+|+||+++..++.++|++++++|+..|......... . .....|..
T Consensus 73 ~~~~lvGhS~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (258)
T 3dqz_A 73 EEVILVGFSFGGINIALAADIFPAKIKVLVFLNAFLPDTTHVPSHVLDKYMEMPGGLGDCEFSSHETRNGTMSLLKMGPK 152 (258)
T ss_dssp CCEEEEEETTHHHHHHHHHTTCGGGEEEEEEESCCCCCSSSCTTHHHHHHHTSTTCCTTCEEEEEEETTEEEEEEECCHH
T ss_pred CceEEEEeChhHHHHHHHHHhChHhhcEEEEecCCCCCCCCcchHHHHHhcccchhhhhcccchhhhhccChhhhhhhHH
Confidence 7899999999999999999999999999998877543211000 0 00000100
Q ss_pred ----ccCCCCCHHHHHHHHh-cCcccC-------CCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhc
Q 004766 613 ----DFGCSEEEEEFYWLIK-YSPLHN-------VRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLC 680 (732)
Q Consensus 613 ----~~g~p~~~~~~~~~~~-~sp~~~-------~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~ 680 (732)
.+.....++....+.. ..+... .... ........|+|+++|.+|..||+..+.++.+.+..
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~--- 225 (258)
T 3dqz_A 153 FMKARLYQNCPIEDYELAKMLHRQGSFFTEDLSKKEKF----SEEGYGSVQRVYVMSSEDKAIPCDFIRWMIDNFNV--- 225 (258)
T ss_dssp HHHHHTSTTSCHHHHHHHHHHCCCEECCHHHHHTSCCC----CTTTGGGSCEEEEEETTCSSSCHHHHHHHHHHSCC---
T ss_pred HHHHHhhccCCHHHHHHHHHhccCCchhhhhhhccccc----cccccccCCEEEEECCCCeeeCHHHHHHHHHhCCc---
Confidence 0001111222222111 111111 0000 00112467999999999999999888777766542
Q ss_pred CCCCCCCCCCCEEEEEeCCCCCCCCCchHHHHHHHHHHHHHHHHHh
Q 004766 681 TSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKML 726 (732)
Q Consensus 681 ~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l 726 (732)
..+++++++||....... .+..+.+.+|+.++|
T Consensus 226 -----------~~~~~~~~~gH~~~~~~p--~~~~~~i~~fl~~~~ 258 (258)
T 3dqz_A 226 -----------SKVYEIDGGDHMVMLSKP--QKLFDSLSAIATDYM 258 (258)
T ss_dssp -----------SCEEEETTCCSCHHHHSH--HHHHHHHHHHHHHTC
T ss_pred -----------ccEEEcCCCCCchhhcCh--HHHHHHHHHHHHHhC
Confidence 277889999998654322 345566788888764
|
| >3i28_A Epoxide hydrolase 2; aromatic hydrocarbons catabolism, detoxification, magnesium, metal-binding, peroxisome; HET: 34N; 1.95A {Homo sapiens} PDB: 1s8o_A* 1zd2_P* 1vj5_A* 1zd4_A* 1zd5_A* 3i1y_A* 1zd3_A* 3koo_A* 3otq_A* 4hai_A* 1cqz_A 1cr6_A* 1ek1_A* 1ek2_A* 3ans_A* 3ant_A* 3pdc_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=2.3e-14 Score=160.95 Aligned_cols=125 Identities=14% Similarity=0.144 Sum_probs=88.3
Q ss_pred EEEEEEEccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHH
Q 004766 451 VHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWH 530 (732)
Q Consensus 451 ~~~~~~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~ 530 (732)
.+..++++.|| .++.+... ++.|+||++||+.+... .|... ...|.++||.|+++|+||.|.....
T Consensus 237 ~~~~~~~~~dg-~~l~~~~~--------g~~p~vv~~HG~~~~~~--~~~~~-~~~l~~~G~~v~~~D~~G~G~S~~~-- 302 (555)
T 3i28_A 237 MSHGYVTVKPR-VRLHFVEL--------GSGPAVCLCHGFPESWY--SWRYQ-IPALAQAGYRVLAMDMKGYGESSAP-- 302 (555)
T ss_dssp SEEEEEEEETT-EEEEEEEE--------CSSSEEEEECCTTCCGG--GGTTH-HHHHHHTTCEEEEECCTTSTTSCCC--
T ss_pred cceeEEEeCCC-cEEEEEEc--------CCCCEEEEEeCCCCchh--HHHHH-HHHHHhCCCEEEEecCCCCCCCCCC--
Confidence 34556677799 88876544 35689999999877643 44443 3456658999999999998864321
Q ss_pred hcccccCCccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCc
Q 004766 531 KGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGV 595 (732)
Q Consensus 531 ~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~ 595 (732)
......+++++.+.+..+++. .+.+++.++|||+||++++.++.++|++++++|+..|.
T Consensus 303 ----~~~~~~~~~~~~~d~~~~~~~--l~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~ 361 (555)
T 3i28_A 303 ----PEIEEYCMEVLCKEMVTFLDK--LGLSQAVFIGHDWGGMLVWYMALFYPERVRAVASLNTP 361 (555)
T ss_dssp ----SCGGGGSHHHHHHHHHHHHHH--HTCSCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCC
T ss_pred ----CCcccccHHHHHHHHHHHHHH--cCCCcEEEEEecHHHHHHHHHHHhChHheeEEEEEccC
Confidence 111123355555544444433 24468999999999999999999999999999987664
|
| >3fob_A Bromoperoxidase; structural genomics, IDP00046, bacillus ANT peroxidase, oxidoreductase; 1.74A {Bacillus anthracis str} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=99.59 E-value=7.4e-14 Score=142.35 Aligned_cols=117 Identities=17% Similarity=0.083 Sum_probs=79.1
Q ss_pred EccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhccccc
Q 004766 457 PSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALA 536 (732)
Q Consensus 457 ~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~ 536 (732)
.+.+| .++.+... |+.|.||++||..+... .|...... |.++||.|+++|.||.|.....
T Consensus 12 ~~~~g-~~l~y~~~--------G~g~~vvllHG~~~~~~--~w~~~~~~-l~~~g~~vi~~D~~G~G~S~~~-------- 71 (281)
T 3fob_A 12 ENQAP-IEIYYEDH--------GTGKPVVLIHGWPLSGR--SWEYQVPA-LVEAGYRVITYDRRGFGKSSQP-------- 71 (281)
T ss_dssp ETTEE-EEEEEEEE--------SSSEEEEEECCTTCCGG--GGTTTHHH-HHHTTEEEEEECCTTSTTSCCC--------
T ss_pred CCCCc-eEEEEEEC--------CCCCeEEEECCCCCcHH--HHHHHHHH-HHhCCCEEEEeCCCCCCCCCCC--------
Confidence 34567 66655432 33567899999887654 34443434 4448999999999998865321
Q ss_pred CCccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhh-CCCeeeEEEEcCCc
Q 004766 537 KKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQ-RPDLFGCALAHVGV 595 (732)
Q Consensus 537 ~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~-~p~~f~a~v~~~p~ 595 (732)
....+++++.+.+..+++. ...+++.++|+|+||.+++.++.+ +|++++++|+..+.
T Consensus 72 ~~~~~~~~~a~dl~~ll~~--l~~~~~~lvGhS~GG~i~~~~~a~~~p~~v~~lvl~~~~ 129 (281)
T 3fob_A 72 WEGYEYDTFTSDLHQLLEQ--LELQNVTLVGFSMGGGEVARYISTYGTDRIEKVVFAGAV 129 (281)
T ss_dssp SSCCSHHHHHHHHHHHHHH--TTCCSEEEEEETTHHHHHHHHHHHHCSTTEEEEEEESCC
T ss_pred ccccCHHHHHHHHHHHHHH--cCCCcEEEEEECccHHHHHHHHHHccccceeEEEEecCC
Confidence 1234556666666555554 234689999999999877766555 58999999877654
|
| >4dnp_A DAD2; alpha/beta hydrolase, hydrolase; 2.15A {Petunia hybrida} PDB: 4dnq_A | Back alignment and structure |
|---|
Probab=99.59 E-value=7.9e-15 Score=147.69 Aligned_cols=210 Identities=11% Similarity=0.053 Sum_probs=129.8
Q ss_pred CccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCccHHHHHHHHHHHHHHcCCCC
Q 004766 480 SHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQ 559 (732)
Q Consensus 480 ~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d 559 (732)
..|+||++||..+... .|.. +...|. .||.|+++|+||.|........ .....+++++.+.+..+++. .+
T Consensus 19 ~~p~vv~~HG~~~~~~--~~~~-~~~~l~-~g~~v~~~D~~G~G~S~~~~~~----~~~~~~~~~~~~~~~~~~~~--~~ 88 (269)
T 4dnp_A 19 GERVLVLAHGFGTDQS--AWNR-ILPFFL-RDYRVVLYDLVCAGSVNPDFFD----FRRYTTLDPYVDDLLHILDA--LG 88 (269)
T ss_dssp CSSEEEEECCTTCCGG--GGTT-TGGGGT-TTCEEEEECCTTSTTSCGGGCC----TTTCSSSHHHHHHHHHHHHH--TT
T ss_pred CCCEEEEEeCCCCcHH--HHHH-HHHHHh-CCcEEEEEcCCCCCCCCCCCCC----ccccCcHHHHHHHHHHHHHh--cC
Confidence 4589999999876543 3333 335577 4999999999998875331111 11222456666666655554 24
Q ss_pred CCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCcccccccccCCCC-----------------Cccccc----cCCCC
Q 004766 560 SRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIG-----------------HAWVSD----FGCSE 618 (732)
Q Consensus 560 ~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~-----------------~~~~~~----~g~p~ 618 (732)
.+++.++|+|+||++++.++.++|++++++|+..|............. ..|... ...+.
T Consensus 89 ~~~~~l~GhS~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (269)
T 4dnp_A 89 IDCCAYVGHSVSAMIGILASIRRPELFSKLILIGASPRFLNDEDYHGGFEQGEIEKVFSAMEANYEAWVNGFAPLAVGAD 168 (269)
T ss_dssp CCSEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCSCCBCBTTBCCSBCHHHHHHHHHHHHHCHHHHHHHHHHHHHCSS
T ss_pred CCeEEEEccCHHHHHHHHHHHhCcHhhceeEEeCCCCCCCChHHhccccchHHHHHHHHhccccHHHHHHHhhhhhccCC
Confidence 468999999999999999999999999999998886543221110000 000000 00111
Q ss_pred CHHHHH-------------------HHHhcCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhh
Q 004766 619 EEEEFY-------------------WLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVL 679 (732)
Q Consensus 619 ~~~~~~-------------------~~~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~ 679 (732)
.++..+ .+...+....+.+ +..|+|+++|.+|..||+..+.++.+.+.
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------i~~P~l~i~g~~D~~~~~~~~~~~~~~~~--- 235 (269)
T 4dnp_A 169 VPAAVREFSRTLFNMRPDITLFVSRTVFNSDMRGVLGL----------VKVPCHIFQTARDHSVPASVATYLKNHLG--- 235 (269)
T ss_dssp CHHHHHHHHHHHHHSCHHHHHHHHHHHHTCCCGGGGGG----------CCSCEEEEEEESBTTBCHHHHHHHHHHSS---
T ss_pred ChhHHHHHHHHHHccCcchhhhHhhhhcchhhHhhhcc----------ccCCEEEEecCCCcccCHHHHHHHHHhCC---
Confidence 111111 1111222222333 78899999999999999998887776653
Q ss_pred cCCCCCCCCCCCEEEEEeCCCCCCCCCchHHHHHHHHHHHHHHHH
Q 004766 680 CTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAK 724 (732)
Q Consensus 680 ~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~ 724 (732)
..+++++++++||....... .+....+.+||.+
T Consensus 236 ----------~~~~~~~~~~~gH~~~~~~p--~~~~~~i~~fl~~ 268 (269)
T 4dnp_A 236 ----------GKNTVHWLNIEGHLPHLSAP--TLLAQELRRALSH 268 (269)
T ss_dssp ----------SCEEEEEEEEESSCHHHHCH--HHHHHHHHHHHC-
T ss_pred ----------CCceEEEeCCCCCCccccCH--HHHHHHHHHHHhh
Confidence 22789999999998643222 2344566677654
|
| >3fsg_A Alpha/beta superfamily hydrolase; PF00561, MCSG, PSI, PSI-2, structural genomics, protein structure initiative, midwest for structural genomics; 2.00A {Oenococcus oeni} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.8e-15 Score=152.74 Aligned_cols=220 Identities=13% Similarity=-0.000 Sum_probs=132.5
Q ss_pred CCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHh-cCcEEEEEcccCCCCCchhHHhcccccCC
Q 004766 460 DGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRH-LGAVFCIANIRGGGEYGEEWHKGGALAKK 538 (732)
Q Consensus 460 dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~-~G~~v~~~~~rG~g~~g~~~~~~~~~~~~ 538 (732)
+| .++.+... ++.|+||++||..+... .|... ...|.+ +||.|+++|+||.|.....- .
T Consensus 9 ~g-~~l~y~~~--------g~~~~vv~lhG~~~~~~--~~~~~-~~~l~~~~g~~v~~~d~~G~G~s~~~~--------~ 68 (272)
T 3fsg_A 9 TR-SNISYFSI--------GSGTPIIFLHGLSLDKQ--STCLF-FEPLSNVGQYQRIYLDLPGMGNSDPIS--------P 68 (272)
T ss_dssp CT-TCCEEEEE--------CCSSEEEEECCTTCCHH--HHHHH-HTTSTTSTTSEEEEECCTTSTTCCCCS--------S
T ss_pred cC-CeEEEEEc--------CCCCeEEEEeCCCCcHH--HHHHH-HHHHhccCceEEEEecCCCCCCCCCCC--------C
Confidence 67 67765432 35678999999876532 23322 223553 59999999999987642211 1
Q ss_pred ccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCcccccccccCCCC------Ccccc
Q 004766 539 QNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIG------HAWVS 612 (732)
Q Consensus 539 ~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~------~~~~~ 612 (732)
.+++++.+.+..+++.- .+.+++.++|+|+||.++..++.++|++++++|+..|............. ..+..
T Consensus 69 -~~~~~~~~~~~~~l~~~-~~~~~~~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (272)
T 3fsg_A 69 -STSDNVLETLIEAIEEI-IGARRFILYGHSYGGYLAQAIAFHLKDQTLGVFLTCPVITADHSKRLTGKHINILEEDINP 146 (272)
T ss_dssp -CSHHHHHHHHHHHHHHH-HTTCCEEEEEEEHHHHHHHHHHHHSGGGEEEEEEEEECSSCCGGGCCCCCCCCEECSCCCC
T ss_pred -CCHHHHHHHHHHHHHHH-hCCCcEEEEEeCchHHHHHHHHHhChHhhheeEEECcccccCccccccccchhhhhhhhhc
Confidence 34455554444444331 13468999999999999999999999999999998877532211100000 00000
Q ss_pred cc-----------CCCCCHHHHHHH-------------------HhcCcc-----cCCCCCCCCCCCCCCCCCeEEEEee
Q 004766 613 DF-----------GCSEEEEEFYWL-------------------IKYSPL-----HNVRRPWEQNPDKPFQYPSTLLLTA 657 (732)
Q Consensus 613 ~~-----------g~p~~~~~~~~~-------------------~~~sp~-----~~~~~~~~~~~~~~~~~~p~Li~~g 657 (732)
.+ .....+..+..+ .....+ .... .+..|+|+++|
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~P~l~i~g 216 (272)
T 3fsg_A 147 VENKEYFADFLSMNVIINNQAWHDYQNLIIPGLQKEDKTFIDQLQNNYSFTFEEKLKNI----------NYQFPFKIMVG 216 (272)
T ss_dssp CTTGGGHHHHHHHCSEESHHHHHHHHHHTHHHHHHCCHHHHHHHTTSCSCTTHHHHTTC----------CCSSCEEEEEE
T ss_pred ccCHHHHHHHHHHhccCCCchhHHHHHHhhhhhhhccHHHHHHHhhhcCCChhhhhhhc----------cCCCCEEEEEe
Confidence 00 000111111111 100000 0112 37899999999
Q ss_pred CCCCCCCchHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeCCCCCCCCCchHHHHHHHHHHHHHHHHHhC
Q 004766 658 DHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLG 727 (732)
Q Consensus 658 ~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 727 (732)
.+|..||+..+.++.+.+. .+++++++++||...... ..+....+.+||.+...
T Consensus 217 ~~D~~~~~~~~~~~~~~~~--------------~~~~~~~~~~gH~~~~~~--~~~~~~~i~~fl~~~~~ 270 (272)
T 3fsg_A 217 RNDQVVGYQEQLKLINHNE--------------NGEIVLLNRTGHNLMIDQ--REAVGFHFDLFLDELNS 270 (272)
T ss_dssp TTCTTTCSHHHHHHHTTCT--------------TEEEEEESSCCSSHHHHT--HHHHHHHHHHHHHHHHC
T ss_pred CCCCcCCHHHHHHHHHhcC--------------CCeEEEecCCCCCchhcC--HHHHHHHHHHHHHHhhc
Confidence 9999999998877765443 368899999999865422 23455678889887643
|
| >3qit_A CURM TE, polyketide synthase; thioesterase, alpha/beta hydrolase, decarboxylase, sulfate elimination, terminal alkene production; 1.68A {Lyngbya majuscula 19L} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.2e-14 Score=147.54 Aligned_cols=122 Identities=16% Similarity=0.156 Sum_probs=90.7
Q ss_pred cCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCC
Q 004766 459 KDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKK 538 (732)
Q Consensus 459 ~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~ 538 (732)
.+| .++.+....+ +..|+||++||..+... .|.. +...|.++||.|+++|+||.|...... ...
T Consensus 11 ~~g-~~l~~~~~g~------~~~~~vv~~hG~~~~~~--~~~~-~~~~l~~~G~~v~~~d~~G~G~s~~~~------~~~ 74 (286)
T 3qit_A 11 FGG-NQICLCSWGS------PEHPVVLCIHGILEQGL--AWQE-VALPLAAQGYRVVAPDLFGHGRSSHLE------MVT 74 (286)
T ss_dssp ETT-EEEEEEEESC------TTSCEEEEECCTTCCGG--GGHH-HHHHHHHTTCEEEEECCTTSTTSCCCS------SGG
T ss_pred cCC-ceEEEeecCC------CCCCEEEEECCCCcccc--hHHH-HHHHhhhcCeEEEEECCCCCCCCCCCC------CCC
Confidence 478 8998877643 34689999999877643 3443 445566689999999999987643211 112
Q ss_pred ccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCcccc
Q 004766 539 QNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDM 598 (732)
Q Consensus 539 ~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~ 598 (732)
...++++.+.+..+++. .+.+++.++|+|+||++++.++.++|++++++|+..|....
T Consensus 75 ~~~~~~~~~~~~~~~~~--~~~~~~~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~ 132 (286)
T 3qit_A 75 SYSSLTFLAQIDRVIQE--LPDQPLLLVGHSMGAMLATAIASVRPKKIKELILVELPLPA 132 (286)
T ss_dssp GCSHHHHHHHHHHHHHH--SCSSCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCCCC
T ss_pred CcCHHHHHHHHHHHHHh--cCCCCEEEEEeCHHHHHHHHHHHhChhhccEEEEecCCCCC
Confidence 34566777776666655 24468999999999999999999999999999999887654
|
| >1mtz_A Proline iminopeptidase; alpha-beta hydrolase, CAP domain, caged active site, prolyl peptidase; 1.80A {Thermoplasma acidophilum} SCOP: c.69.1.7 PDB: 1mt3_A 1mu0_A* 1xrr_A 1xrq_A 1xro_A 1xrn_A 1xrm_A 1xrp_A 1xrl_A* 1xqw_A* 1xqx_A* 1xqy_A 1xqv_A | Back alignment and structure |
|---|
Probab=99.58 E-value=1.9e-14 Score=147.47 Aligned_cols=122 Identities=20% Similarity=0.147 Sum_probs=80.8
Q ss_pred cCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCC
Q 004766 459 KDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKK 538 (732)
Q Consensus 459 ~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~ 538 (732)
.+| .++.+...-+ ....|.||++||+++.... |...+..++. +||.|+++|.||.|.....- ..
T Consensus 12 ~~g-~~l~~~~~g~-----~~~~~~vvllHG~~~~~~~--~~~~~~~l~~-~g~~vi~~D~~G~G~S~~~~-------~~ 75 (293)
T 1mtz_A 12 VNG-IYIYYKLCKA-----PEEKAKLMTMHGGPGMSHD--YLLSLRDMTK-EGITVLFYDQFGCGRSEEPD-------QS 75 (293)
T ss_dssp ETT-EEEEEEEECC-----SSCSEEEEEECCTTTCCSG--GGGGGGGGGG-GTEEEEEECCTTSTTSCCCC-------GG
T ss_pred ECC-EEEEEEEECC-----CCCCCeEEEEeCCCCcchh--HHHHHHHHHh-cCcEEEEecCCCCccCCCCC-------CC
Confidence 378 7876654422 1123789999998765432 2222334444 89999999999988643211 01
Q ss_pred ccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCccc
Q 004766 539 QNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMD 597 (732)
Q Consensus 539 ~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d 597 (732)
..+++++.+.+..+++.- ...+++.++|+|+||.++..++.++|++++++|+..|...
T Consensus 76 ~~~~~~~~~dl~~~~~~l-~~~~~~~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~~~~~ 133 (293)
T 1mtz_A 76 KFTIDYGVEEAEALRSKL-FGNEKVFLMGSSYGGALALAYAVKYQDHLKGLIVSGGLSS 133 (293)
T ss_dssp GCSHHHHHHHHHHHHHHH-HTTCCEEEEEETHHHHHHHHHHHHHGGGEEEEEEESCCSB
T ss_pred cccHHHHHHHHHHHHHHh-cCCCcEEEEEecHHHHHHHHHHHhCchhhheEEecCCccC
Confidence 123455544444444331 0235899999999999999999999999999999888654
|
| >1a88_A Chloroperoxidase L; haloperoxidase, oxidoreductase; 1.90A {Streptomyces lividans} SCOP: c.69.1.12 | Back alignment and structure |
|---|
Probab=99.58 E-value=5.9e-14 Score=142.38 Aligned_cols=120 Identities=18% Similarity=0.162 Sum_probs=82.1
Q ss_pred EEccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccc
Q 004766 456 VPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGAL 535 (732)
Q Consensus 456 ~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~ 535 (732)
+++.|| .++.+...-|+ ..|.||++||..+... .|... ...|.++||.|+++|+||.|.....
T Consensus 3 ~~~~~g-~~l~y~~~g~~------~~~~vvllHG~~~~~~--~w~~~-~~~l~~~g~~vi~~D~~G~G~S~~~------- 65 (275)
T 1a88_A 3 VTTSDG-TNIFYKDWGPR------DGLPVVFHHGWPLSAD--DWDNQ-MLFFLSHGYRVIAHDRRGHGRSDQP------- 65 (275)
T ss_dssp EECTTS-CEEEEEEESCT------TSCEEEEECCTTCCGG--GGHHH-HHHHHHTTCEEEEECCTTSTTSCCC-------
T ss_pred EEccCC-CEEEEEEcCCC------CCceEEEECCCCCchh--hHHHH-HHHHHHCCceEEEEcCCcCCCCCCC-------
Confidence 556789 88876554321 3478999999866542 34443 3455658999999999998865321
Q ss_pred cCCccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhC-CCeeeEEEEcCCc
Q 004766 536 AKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQR-PDLFGCALAHVGV 595 (732)
Q Consensus 536 ~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~-p~~f~a~v~~~p~ 595 (732)
....+++++.+.+..+++. ...+++.++|||+||++++.++.++ |++++++|+..+.
T Consensus 66 -~~~~~~~~~~~dl~~~l~~--l~~~~~~lvGhS~Gg~ia~~~a~~~~p~~v~~lvl~~~~ 123 (275)
T 1a88_A 66 -STGHDMDTYAADVAALTEA--LDLRGAVHIGHSTGGGEVARYVARAEPGRVAKAVLVSAV 123 (275)
T ss_dssp -SSCCSHHHHHHHHHHHHHH--HTCCSEEEEEETHHHHHHHHHHHHSCTTSEEEEEEESCC
T ss_pred -CCCCCHHHHHHHHHHHHHH--cCCCceEEEEeccchHHHHHHHHHhCchheEEEEEecCC
Confidence 1123455555444444433 2335899999999999998877776 9999999887754
|
| >2ocg_A Valacyclovir hydrolase; alpha beta hydrolase fold; 1.75A {Homo sapiens} PDB: 2oci_A* 2ock_A 2ocl_A | Back alignment and structure |
|---|
Probab=99.58 E-value=5.5e-14 Score=140.90 Aligned_cols=224 Identities=13% Similarity=0.087 Sum_probs=128.5
Q ss_pred cCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCC
Q 004766 459 KDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKK 538 (732)
Q Consensus 459 ~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~ 538 (732)
.+| .++.+...- ...|.||++||..+.. ...|.. ....|.++||.|+++|+||.|..... .....
T Consensus 9 ~~g-~~l~~~~~g-------~~~~~vvllHG~~~~~-~~~~~~-~~~~l~~~g~~vi~~D~~G~G~S~~~-----~~~~~ 73 (254)
T 2ocg_A 9 VNG-VQLHYQQTG-------EGDHAVLLLPGMLGSG-ETDFGP-QLKNLNKKLFTVVAWDPRGYGHSRPP-----DRDFP 73 (254)
T ss_dssp ETT-EEEEEEEEE-------CCSEEEEEECCTTCCH-HHHCHH-HHHHSCTTTEEEEEECCTTSTTCCSS-----CCCCC
T ss_pred ECC-EEEEEEEec-------CCCCeEEEECCCCCCC-ccchHH-HHHHHhhCCCeEEEECCCCCCCCCCC-----CCCCC
Confidence 378 887765432 1236899999976641 112443 34556658999999999998865321 01111
Q ss_pred ccHH-HHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCcccccc-----cccCCCCCcccc
Q 004766 539 QNCF-DDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLR-----YHKFTIGHAWVS 612 (732)
Q Consensus 539 ~~~~-~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~-----~~~~~~~~~~~~ 612 (732)
...+ +|+.++++++.+.+ .+++.++|+|+||++++.++.++|++++++|+..|...... +........|..
T Consensus 74 ~~~~~~~~~~~~~~l~~l~---~~~~~l~GhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (254)
T 2ocg_A 74 ADFFERDAKDAVDLMKALK---FKKVSLLGWSDGGITALIAAAKYPSYIHKMVIWGANAYVTDEDSMIYEGIRDVSKWSE 150 (254)
T ss_dssp TTHHHHHHHHHHHHHHHTT---CSSEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCSBCCHHHHHHHHTTSCGGGSCH
T ss_pred hHHHHHHHHHHHHHHHHhC---CCCEEEEEECHhHHHHHHHHHHChHHhhheeEeccccccChhhHHHHHHHHHHHHHHH
Confidence 1113 33444455554443 36899999999999999999999999999998776432110 000000001110
Q ss_pred --------ccCCCCCH----HHHHHHHhcC--cc-cCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHH
Q 004766 613 --------DFGCSEEE----EEFYWLIKYS--PL-HNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQY 677 (732)
Q Consensus 613 --------~~g~p~~~----~~~~~~~~~s--p~-~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~ 677 (732)
.++..... ...+.+.... +- ..... ....+..|+|+++|++|..||+..+.++.+.+..
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~l~~i~~P~lii~G~~D~~~~~~~~~~~~~~~~~ 224 (254)
T 2ocg_A 151 RTRKPLEALYGYDYFARTCEKWVDGIRQFKHLPDGNICRH------LLPRVQCPALIVHGEKDPLVPRFHADFIHKHVKG 224 (254)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHHGGGGSGGGBSSGG------GGGGCCSCEEEEEETTCSSSCHHHHHHHHHHSTT
T ss_pred HhHHHHHHHhcchhhHHHHHHHHHHHHHHHhccCCchhhh------hhhcccCCEEEEecCCCccCCHHHHHHHHHhCCC
Confidence 01110000 0011111110 00 00000 0113789999999999999999888777665442
Q ss_pred hhcCCCCCCCCCCCEEEEEeCCCCCCCCCchHHHHHHHHHHHHHH
Q 004766 678 VLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFM 722 (732)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl 722 (732)
.++.+++++||....... ....+.+.+||
T Consensus 225 --------------~~~~~~~~~gH~~~~e~p--~~~~~~i~~fl 253 (254)
T 2ocg_A 225 --------------SRLHLMPEGKHNLHLRFA--DEFNKLAEDFL 253 (254)
T ss_dssp --------------CEEEEETTCCTTHHHHTH--HHHHHHHHHHH
T ss_pred --------------CEEEEcCCCCCchhhhCH--HHHHHHHHHHh
Confidence 478889999998653222 24445566776
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.58 E-value=9.4e-14 Score=157.34 Aligned_cols=240 Identities=8% Similarity=-0.095 Sum_probs=156.3
Q ss_pred EEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecccccc-eeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcc
Q 004766 134 LIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSW-FKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTET 212 (732)
Q Consensus 134 ~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~~~-~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~ 212 (732)
+..+++||||++|||+.+.+| ++.||++++|+....+... .....++|||| +++|++....
T Consensus 24 ~~~~~~~~DG~~la~~s~~~g----~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd--~~l~~~~~~~------------ 85 (582)
T 3o4h_A 24 KYSLQGVVDGDKLLVVGFSEG----SVNAYLYDGGETVKLNREPINSVLDPHYGVG--RVILVRDVSK------------ 85 (582)
T ss_dssp EEEEEEEETTTEEEEEEEETT----EEEEEEEETTEEEECCSSCCSEECEECTTCS--EEEEEEECST------------
T ss_pred hheeecCCCCCeEEEEEccCC----ceeEEEEcCCCcEeeecccccccccccCCCC--eEEEEeccCC------------
Confidence 568889999999999987655 3455556788765444332 23478999999 5777664310
Q ss_pred cCCcccEEEEEEC--CCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccC
Q 004766 213 DSNLYHEFYYHFL--GTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRD 290 (732)
Q Consensus 213 ~~~~~~~v~~~~l--gt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~ 290 (732)
.....+||.+++ .+.. ..+. . .... ...+|||||+.+++.+.... ... ++|++++.
T Consensus 86 -g~~~~~l~~~~~~~~g~~---~~l~-~--~~~~-~~~~~s~dg~~~~~~s~~~~--~~~--l~d~~~g~---------- 143 (582)
T 3o4h_A 86 -GAEQHALFKVNTSRPGEE---QRLE-A--VKPM-RILSGVDTGEAVVFTGATED--RVA--LYALDGGG---------- 143 (582)
T ss_dssp -TSCCEEEEEEETTSTTCC---EECT-T--SCSB-EEEEEEECSSCEEEEEECSS--CEE--EEEEETTE----------
T ss_pred -CCcceEEEEEeccCCCcc---cccc-C--CCCc-eeeeeCCCCCeEEEEecCCC--Cce--EEEccCCc----------
Confidence 123346888887 4322 1221 1 1122 25689999999888765443 233 55777642
Q ss_pred CCCCcEEeeecccceEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecCCEEEEEEecC
Q 004766 291 GLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSD 370 (732)
Q Consensus 291 ~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~~l~~~~~~~ 370 (732)
.+.++.... ....|||||+.|++.+++.+....|+++|+++++ .+.|..+. ..+..+.|++|++.++....+
T Consensus 144 ----~~~l~~~~~-~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~-~~~l~~~~--~~~~~~~~SpDG~~l~~~~~~ 215 (582)
T 3o4h_A 144 ----LRELARLPG-FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGG-LRVFDSGE--GSFSSASISPGMKVTAGLETA 215 (582)
T ss_dssp ----EEEEEEESS-CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCC-CEEECCSS--CEEEEEEECTTSCEEEEEECS
T ss_pred ----EEEeecCCC-ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCC-ceEeecCC--CccccceECCCCCEEEEccCC
Confidence 334444332 3345999999999887765444679999998887 56676554 456889999877666677777
Q ss_pred CeeEEEEEeCCCCceeeecccccceeeEee--------cccCCcEEEEEEecCCCCceEEEEEC
Q 004766 371 VKYVLQIRDLKNGSLLHQLPIEIGSVNAIS--------ARREDSVVFISFTSFLIPGIVYQCNL 426 (732)
Q Consensus 371 g~~~l~~~d~~~g~~~~~l~~~~g~v~~~~--------~s~d~~~l~~~~ss~~~p~~~y~~d~ 426 (732)
+..+|++||+++|+. +.++...+.+..+. +++|| .++++.+.. .++..|++
T Consensus 216 ~~~~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~spdg-~~~~~~~~~---g~~~l~~~ 274 (582)
T 3o4h_A 216 REARLVTVDPRDGSV-EDLELPSKDFSSYRPTAITWLGYLPDG-RLAVVARRE---GRSAVFID 274 (582)
T ss_dssp SCEEEEEECTTTCCE-EECCCSCSHHHHHCCSEEEEEEECTTS-CEEEEEEET---TEEEEEET
T ss_pred CeeEEEEEcCCCCcE-EEccCCCcChhhhhhccccceeEcCCC-cEEEEEEcC---CcEEEEEE
Confidence 777999999997776 34433344444455 88999 677666543 35666666
|
| >1qe3_A PNB esterase, para-nitrobenzyl esterase; alpha-beta hydrolase directed evolution; 1.50A {Bacillus subtilis} SCOP: c.69.1.1 PDB: 1c7j_A 1c7i_A | Back alignment and structure |
|---|
Probab=99.58 E-value=4.8e-16 Score=170.31 Aligned_cols=218 Identities=14% Similarity=0.107 Sum_probs=141.4
Q ss_pred eEEEEEEEcCCCCCCCCccEEEEEcCCCC---ccCCCCcChhHHHHHHhcCcEEEEEcccC-CCCCchhHHhcccccCCc
Q 004766 464 KIPMFIVSKKNIKLDGSHPCLLYGYGGFN---ISVTPSFSVSRTILMRHLGAVFCIANIRG-GGEYGEEWHKGGALAKKQ 539 (732)
Q Consensus 464 ~i~~~~~~p~~~~~~~~~P~vv~~hG~~~---~~~~~~~~~~~~~~l~~~G~~v~~~~~rG-~g~~g~~~~~~~~~~~~~ 539 (732)
-+.+.++.|+.. .++.|+||++|||.. ......+.. ..++.+.|++|+.+|||. ..+|+..-... ....+.
T Consensus 82 cL~l~v~~P~~~--~~~~PviV~iHGGg~~~g~~~~~~~~~--~~la~~g~~vvv~~nYRlg~~Gf~~~~~~~-~~~~~n 156 (489)
T 1qe3_A 82 CLYVNVFAPDTP--SQNLPVMVWIHGGAFYLGAGSEPLYDG--SKLAAQGEVIVVTLNYRLGPFGFLHLSSFD-EAYSDN 156 (489)
T ss_dssp CCEEEEEEECSS--CCSEEEEEEECCSTTTSCCTTSGGGCC--HHHHHHHTCEEEEECCCCHHHHSCCCTTTC-TTSCSC
T ss_pred CCEEEEEeCCCC--CCCCCEEEEECCCccccCCCCCcccCH--HHHHhcCCEEEEecCccCcccccCcccccc-ccCCCC
Confidence 356677788752 245899999999853 222222332 344553359999999993 32333210000 012334
Q ss_pred cHHHHHHHHHHHHHHcC---CCCCCcEEEEecChhHHHHHHHHhhC--CCeeeEEEEcCCcccccccccCC-CCCccccc
Q 004766 540 NCFDDFISASEYLISAG---YTQSRKLCIEGGSNGGLLVGACINQR--PDLFGCALAHVGVMDMLRYHKFT-IGHAWVSD 613 (732)
Q Consensus 540 ~~~~D~~~~~~~l~~~~---~~d~~~i~i~G~S~GG~l~~~~~~~~--p~~f~a~v~~~p~~d~~~~~~~~-~~~~~~~~ 613 (732)
..+.|+.++++|+.++. ..||+||.|+|+|+||++++.++... +++|+++|+.+|..++....... ....+...
T Consensus 157 ~gl~D~~~al~wv~~~i~~fggDp~~V~l~G~SaGg~~~~~~~~~~~~~~lf~~~i~~sg~~~~~~~~~~~~~~~~~~~~ 236 (489)
T 1qe3_A 157 LGLLDQAAALKWVRENISAFGGDPDNVTVFGESAGGMSIAALLAMPAAKGLFQKAIMESGASRTMTKEQAASTAAAFLQV 236 (489)
T ss_dssp HHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHTTCGGGTTSCSEEEEESCCCCCBCHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHhCCCcceeEEEEechHHHHHHHHHhCccccchHHHHHHhCCCCCCCCHHHHHHHHHHHHHH
Confidence 46899999999998762 35999999999999999999888753 57999999999987443221100 00011123
Q ss_pred cCCCC-CHH------HHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhcCCCCCC
Q 004766 614 FGCSE-EEE------EFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENS 686 (732)
Q Consensus 614 ~g~p~-~~~------~~~~~~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~ 686 (732)
.|++. ..+ .-+.+...+++.+... ..+|.+++++..|.+|.+.++.++.++++..
T Consensus 237 ~g~~~~~~~~Lr~~~~~~l~~~~~~~~~~~~----------~~~~~~~~~p~~D~~~~~~~~~~~~~~~~~~-------- 298 (489)
T 1qe3_A 237 LGINESQLDRLHTVAAEDLLKAADQLRIAEK----------ENIFQLFFQPALDPKTLPEEPEKSIAEGAAS-------- 298 (489)
T ss_dssp HTCCTTCGGGGGTSCHHHHHHHHHHHHTSTT----------CCTTSCSSCCBCBTTTBCSCHHHHHHTTTTT--------
T ss_pred cCCCHHHHHHHHcCCHHHHHHHHHHhhhccc----------cccCCccceEeECCeecCcCHHHHHhcCCCC--------
Confidence 45442 110 1112333334332212 3456788999999999999999998887765
Q ss_pred CCCCCEEEEEeCCCCCCCCC
Q 004766 687 PQTNPIIGRIERKAGHGVGL 706 (732)
Q Consensus 687 ~~~~~~~~~~~~~~gH~~~~ 706 (732)
++|+.+-.++++||.+..
T Consensus 299 --~vp~~~g~~~~Eg~~~~~ 316 (489)
T 1qe3_A 299 --GIPLLIGTTRDEGYLFFT 316 (489)
T ss_dssp --TCCEEEEEETTGGGGTCC
T ss_pred --CCCEEEeeecchhHhhcc
Confidence 899999999999998764
|
| >3hss_A Putative bromoperoxidase; alpha beta hydrolase, oxidoreductase, hydrolase; 1.90A {Mycobacterium tuberculosis} PDB: 3e3a_A 3hys_A 3hzo_A | Back alignment and structure |
|---|
Probab=99.58 E-value=9.5e-15 Score=149.54 Aligned_cols=207 Identities=13% Similarity=0.089 Sum_probs=126.0
Q ss_pred CCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCccHHHHHHHHHHHHHHcCCC
Q 004766 479 GSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYT 558 (732)
Q Consensus 479 ~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~ 558 (732)
++.|+||++||..+... .|.......+.++||.|+++|+||.|... .....+++++.+.+..+++. .
T Consensus 41 g~~~~vv~lHG~~~~~~--~~~~~~~~~l~~~g~~vi~~D~~G~G~s~---------~~~~~~~~~~~~~~~~~l~~--l 107 (293)
T 3hss_A 41 GTGDPVVFIAGRGGAGR--TWHPHQVPAFLAAGYRCITFDNRGIGATE---------NAEGFTTQTMVADTAALIET--L 107 (293)
T ss_dssp CSSEEEEEECCTTCCGG--GGTTTTHHHHHHTTEEEEEECCTTSGGGT---------TCCSCCHHHHHHHHHHHHHH--H
T ss_pred CCCCEEEEECCCCCchh--hcchhhhhhHhhcCCeEEEEccCCCCCCC---------CcccCCHHHHHHHHHHHHHh--c
Confidence 45689999999877653 34422233343499999999999986321 11123455665555555543 2
Q ss_pred CCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCccccccccc-------------CCCCCccc------cccCCC--
Q 004766 559 QSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHK-------------FTIGHAWV------SDFGCS-- 617 (732)
Q Consensus 559 d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~-------------~~~~~~~~------~~~g~p-- 617 (732)
+.+++.++|+|+||.++..++.++|++++++|+..|......... ......+. ..+...
T Consensus 108 ~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (293)
T 3hss_A 108 DIAPARVVGVSMGAFIAQELMVVAPELVSSAVLMATRGRLDRARQFFNKAEAELYDSGVQLPPTYDARARLLENFSRKTL 187 (293)
T ss_dssp TCCSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSSCCHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHSCHHHH
T ss_pred CCCcEEEEeeCccHHHHHHHHHHChHHHHhhheecccccCChhhhHHHHHHHHHHhhcccchhhHHHHHHHhhhcccccc
Confidence 346899999999999999999999999999999988654321100 00000000 000000
Q ss_pred CCHH---HH---------------HHHHhc----CcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHH
Q 004766 618 EEEE---EF---------------YWLIKY----SPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATM 675 (732)
Q Consensus 618 ~~~~---~~---------------~~~~~~----sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l 675 (732)
.+.. .+ ...... +....+. .+.+|+|+++|.+|..+|+..+.++.+.+
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----------~i~~P~lii~g~~D~~~~~~~~~~~~~~~ 257 (293)
T 3hss_A 188 NDDVAVGDWIAMFSMWPIKSTPGLRCQLDCAPQTNRLPAYR----------NIAAPVLVIGFADDVVTPPYLGREVADAL 257 (293)
T ss_dssp TCHHHHHHHHHHHHHSCCCCCHHHHHHHTSSCSSCCHHHHT----------TCCSCEEEEEETTCSSSCHHHHHHHHHHS
T ss_pred cccccHHHHHHHHhhccccccHHHHhHhhhccccchHHHHh----------hCCCCEEEEEeCCCCCCCHHHHHHHHHHC
Confidence 0000 00 000000 0011112 37889999999999999998888777665
Q ss_pred HHhhcCCCCCCCCCCCEEEEEeCCCCCCCCCchHHHHHHHHHHHHHHHH
Q 004766 676 QYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAK 724 (732)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~ 724 (732)
. .+.+.+++++||....... .+....+.+||.+
T Consensus 258 ~--------------~~~~~~~~~~gH~~~~~~p--~~~~~~i~~fl~~ 290 (293)
T 3hss_A 258 P--------------NGRYLQIPDAGHLGFFERP--EAVNTAMLKFFAS 290 (293)
T ss_dssp T--------------TEEEEEETTCCTTHHHHSH--HHHHHHHHHHHHT
T ss_pred C--------------CceEEEeCCCcchHhhhCH--HHHHHHHHHHHHh
Confidence 4 2588999999998643222 2445567777764
|
| >1zoi_A Esterase; alpha/beta hydrolase fold; 1.60A {Pseudomonas putida} PDB: 4dgq_A | Back alignment and structure |
|---|
Probab=99.58 E-value=6.2e-14 Score=142.40 Aligned_cols=120 Identities=17% Similarity=0.160 Sum_probs=82.6
Q ss_pred EEccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccc
Q 004766 456 VPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGAL 535 (732)
Q Consensus 456 ~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~ 535 (732)
+++.|| .+|.+...-|+ ..|.||++||..+... .|... ...|.++||.|+++|.||.|.....
T Consensus 4 ~~~~~g-~~l~y~~~g~~------~~~~vvllHG~~~~~~--~w~~~-~~~L~~~g~~vi~~D~~G~G~S~~~------- 66 (276)
T 1zoi_A 4 VTTKDG-VQIFYKDWGPR------DAPVIHFHHGWPLSAD--DWDAQ-LLFFLAHGYRVVAHDRRGHGRSSQV------- 66 (276)
T ss_dssp EECTTS-CEEEEEEESCT------TSCEEEEECCTTCCGG--GGHHH-HHHHHHTTCEEEEECCTTSTTSCCC-------
T ss_pred EECCCC-cEEEEEecCCC------CCCeEEEECCCCcchh--HHHHH-HHHHHhCCCEEEEecCCCCCCCCCC-------
Confidence 456789 88876654321 3478999999876542 45443 3456658999999999998865321
Q ss_pred cCCccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhC-CCeeeEEEEcCCc
Q 004766 536 AKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQR-PDLFGCALAHVGV 595 (732)
Q Consensus 536 ~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~-p~~f~a~v~~~p~ 595 (732)
....+++++.+.+..+++. .+.+++.++|+|+||.+++.++.++ |++++++|+..+.
T Consensus 67 -~~~~~~~~~~~d~~~~l~~--l~~~~~~lvGhS~Gg~ia~~~a~~~~p~~v~~lvl~~~~ 124 (276)
T 1zoi_A 67 -WDGHDMDHYADDVAAVVAH--LGIQGAVHVGHSTGGGEVVRYMARHPEDKVAKAVLIAAV 124 (276)
T ss_dssp -SSCCSHHHHHHHHHHHHHH--HTCTTCEEEEETHHHHHHHHHHHHCTTSCCCCEEEESCC
T ss_pred -CCCCCHHHHHHHHHHHHHH--hCCCceEEEEECccHHHHHHHHHHhCHHheeeeEEecCC
Confidence 1123455555444444433 2345899999999999999877776 9999999887753
|
| >3qvm_A OLEI00960; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta hydrolase fold, hydrolase; 2.00A {Oleispira antarctica} | Back alignment and structure |
|---|
Probab=99.57 E-value=5.1e-15 Score=150.10 Aligned_cols=209 Identities=11% Similarity=0.064 Sum_probs=132.9
Q ss_pred cEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCccHHHHHHHHHHHHHHcCCCCCC
Q 004766 482 PCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSR 561 (732)
Q Consensus 482 P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ 561 (732)
|+||++||..+... .|.. +...|. +||.|+++|+||.|........ .....+++++.+.+..+++. .+.+
T Consensus 29 ~~vv~lHG~~~~~~--~~~~-~~~~l~-~g~~v~~~d~~G~G~s~~~~~~----~~~~~~~~~~~~~~~~~~~~--~~~~ 98 (282)
T 3qvm_A 29 KTVLLAHGFGCDQN--MWRF-MLPELE-KQFTVIVFDYVGSGQSDLESFS----TKRYSSLEGYAKDVEEILVA--LDLV 98 (282)
T ss_dssp CEEEEECCTTCCGG--GGTT-THHHHH-TTSEEEECCCTTSTTSCGGGCC----TTGGGSHHHHHHHHHHHHHH--TTCC
T ss_pred CeEEEECCCCCCcc--hHHH-HHHHHh-cCceEEEEecCCCCCCCCCCCC----ccccccHHHHHHHHHHHHHH--cCCC
Confidence 89999999876643 3433 356678 5999999999998865432210 01223566666666666554 2347
Q ss_pred cEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCccccccccc-CC--C---------------CCcccc-----ccCCCC
Q 004766 562 KLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHK-FT--I---------------GHAWVS-----DFGCSE 618 (732)
Q Consensus 562 ~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~-~~--~---------------~~~~~~-----~~g~p~ 618 (732)
++.++|+|+||.++..++.++|++++++|+..|......... +. . ...|.. .++.+.
T Consensus 99 ~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (282)
T 3qvm_A 99 NVSIIGHSVSSIIAGIASTHVGDRISDITMICPSPCFMNFPPDYVGGFERDDLEELINLMDKNYIGWANYLAPLVMGASH 178 (282)
T ss_dssp SEEEEEETHHHHHHHHHHHHHGGGEEEEEEESCCSBSBEETTTEECSBCHHHHHHHHHHHHHCHHHHHHHHHHHHHCTTS
T ss_pred ceEEEEecccHHHHHHHHHhCchhhheEEEecCcchhccCchhhhchhccccHHHHHHHHhcchhhHHHHHHhhccCCcc
Confidence 899999999999999999999999999999988764332110 00 0 000000 011122
Q ss_pred CHHHHHHH-------------------HhcCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhh
Q 004766 619 EEEEFYWL-------------------IKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVL 679 (732)
Q Consensus 619 ~~~~~~~~-------------------~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~ 679 (732)
.+...+.+ ...+....+. .+..|+|+++|.+|..||+..+.++.+.+.
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~i~~P~l~i~g~~D~~~~~~~~~~~~~~~~--- 245 (282)
T 3qvm_A 179 SSELIGELSGSFCTTDPIVAKTFAKATFFSDYRSLLE----------DISTPALIFQSAKDSLASPEVGQYMAENIP--- 245 (282)
T ss_dssp CHHHHHHHHHHHHHSCHHHHHHHHHHHHSCBCGGGGG----------GCCSCEEEEEEEECTTCCHHHHHHHHHHSS---
T ss_pred chhhHHHHHHHHhcCCcHHHHHHHHHHhcccHHHHHh----------cCCCCeEEEEeCCCCcCCHHHHHHHHHhCC---
Confidence 22111111 1111112222 378999999999999999988887766553
Q ss_pred cCCCCCCCCCCCEEEEEeCCCCCCCCCchHHHHHHHHHHHHHHHHHh
Q 004766 680 CTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKML 726 (732)
Q Consensus 680 ~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l 726 (732)
..++++++++||...... ..+....+.+||.++.
T Consensus 246 -----------~~~~~~~~~~gH~~~~~~--~~~~~~~i~~fl~~~~ 279 (282)
T 3qvm_A 246 -----------NSQLELIQAEGHCLHMTD--AGLITPLLIHFIQNNQ 279 (282)
T ss_dssp -----------SEEEEEEEEESSCHHHHC--HHHHHHHHHHHHHHC-
T ss_pred -----------CCcEEEecCCCCcccccC--HHHHHHHHHHHHHhcC
Confidence 258899999999864322 2345667888887753
|
| >3sty_A Methylketone synthase 1; alpha/beta hydrolase, decarboxylase, hydrolase; HET: DKA; 1.70A {Lycopersicon hirsutum F} PDB: 3stu_A* 3stt_A* 3stv_A* 3stw_A* 3stx_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=1.2e-14 Score=146.55 Aligned_cols=219 Identities=12% Similarity=0.072 Sum_probs=130.0
Q ss_pred CCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCccHHHHHHHHHHHHHHcCCC
Q 004766 479 GSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYT 558 (732)
Q Consensus 479 ~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~ 558 (732)
...|+||++||..+... .|.. ....|.++||.|+++|+||.|...... ....+++++.+.+..+++.- .
T Consensus 10 ~~~~~vvllHG~~~~~~--~~~~-~~~~l~~~g~~v~~~D~~G~G~S~~~~-------~~~~~~~~~~~~~~~~l~~l-~ 78 (267)
T 3sty_A 10 FVKKHFVLVHAAFHGAW--CWYK-IVALMRSSGHNVTALDLGASGINPKQA-------LQIPNFSDYLSPLMEFMASL-P 78 (267)
T ss_dssp CCCCEEEEECCTTCCGG--GGHH-HHHHHHHTTCEEEEECCTTSTTCSCCG-------GGCCSHHHHHHHHHHHHHTS-C
T ss_pred CCCCeEEEECCCCCCcc--hHHH-HHHHHHhcCCeEEEeccccCCCCCCcC-------CccCCHHHHHHHHHHHHHhc-C
Confidence 46799999999886643 3443 445566589999999999988653321 11245666666666666542 1
Q ss_pred CCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCcccccccc------cC-CCCCccc--------------------
Q 004766 559 QSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYH------KF-TIGHAWV-------------------- 611 (732)
Q Consensus 559 d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~------~~-~~~~~~~-------------------- 611 (732)
+.+++.++|+|+||+++..++.++|++++++|+..|........ .. .....|.
T Consensus 79 ~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (267)
T 3sty_A 79 ANEKIILVGHALGGLAISKAMETFPEKISVAVFLSGLMPGPNIDATTVCTKAGSAVLGQLDNCVTYENGPTNPPTTLIAG 158 (267)
T ss_dssp TTSCEEEEEETTHHHHHHHHHHHSGGGEEEEEEESCCCCBTTBCHHHHHHHHHHTTTTCTTCEEECTTCTTSCCCEEECC
T ss_pred CCCCEEEEEEcHHHHHHHHHHHhChhhcceEEEecCCCCCCcchHHHHHHHhcccchhhhhhhhhhhhhhhcccchhhhh
Confidence 45799999999999999999999999999999877754221100 00 0000010
Q ss_pred -----cccCCCCCHHHHHHHHh-cCcccCCC--CC--CCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhcC
Q 004766 612 -----SDFGCSEEEEEFYWLIK-YSPLHNVR--RP--WEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCT 681 (732)
Q Consensus 612 -----~~~g~p~~~~~~~~~~~-~sp~~~~~--~~--~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~ 681 (732)
..+.....++....+.. ..+..... .. ............|+|+++|.+|..+|+....++.+.+.
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~----- 233 (267)
T 3sty_A 159 PKFLATNVYHLSPIEDLALATALVRPLYLYLAEDISKEVVLSSKRYGSVKRVFIVATENDALKKEFLKLMIEKNP----- 233 (267)
T ss_dssp HHHHHHHTSTTSCHHHHHHHHHHCCCEECCCHHHHHHHCCCCTTTGGGSCEEEEECCCSCHHHHHHHHHHHHHSC-----
T ss_pred HHHHHHhhcccCCHHHHHHHHHhhccchhHHHHHhhcchhcccccccCCCEEEEEeCCCCccCHHHHHHHHHhCC-----
Confidence 00111111222211111 11110000 00 00000000135799999999999999888777766543
Q ss_pred CCCCCCCCCCEEEEEeCCCCCCCCCchHHHHHHHHHHHHHHHH
Q 004766 682 SLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAK 724 (732)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~ 724 (732)
+ ..+++++++||....... .+....+.+|+.+
T Consensus 234 -------~--~~~~~i~~~gH~~~~e~p--~~~~~~i~~fl~~ 265 (267)
T 3sty_A 234 -------P--DEVKEIEGSDHVTMMSKP--QQLFTTLLSIANK 265 (267)
T ss_dssp -------C--SEEEECTTCCSCHHHHSH--HHHHHHHHHHHHH
T ss_pred -------C--ceEEEeCCCCccccccCh--HHHHHHHHHHHHh
Confidence 2 488999999998643322 2455567778765
|
| >2yys_A Proline iminopeptidase-related protein; TTHA1809, structural genomics, unknown function; 2.20A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.57 E-value=4.2e-14 Score=144.66 Aligned_cols=230 Identities=13% Similarity=0.021 Sum_probs=136.3
Q ss_pred EEEccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhccc
Q 004766 455 FVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGA 534 (732)
Q Consensus 455 ~~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~ 534 (732)
.+.+.+| .++.+...-|+ ..|.||++||..+.... .|.. ....|+ +||.|+++|.||.|..... .
T Consensus 6 ~~~~~~g-~~l~~~~~G~~------~~~~vvllHG~~~~~~~-~w~~-~~~~L~-~~~~vi~~Dl~G~G~S~~~-----~ 70 (286)
T 2yys_A 6 GYVPVGE-AELYVEDVGPV------EGPALFVLHGGPGGNAY-VLRE-GLQDYL-EGFRVVYFDQRGSGRSLEL-----P 70 (286)
T ss_dssp EEEECSS-CEEEEEEESCT------TSCEEEEECCTTTCCSH-HHHH-HHGGGC-TTSEEEEECCTTSTTSCCC-----C
T ss_pred eEEeECC-EEEEEEeecCC------CCCEEEEECCCCCcchh-HHHH-HHHHhc-CCCEEEEECCCCCCCCCCC-----c
Confidence 4445688 88877655331 35789999998876420 3443 334566 7999999999998864320 0
Q ss_pred ccCCccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCcccccc---cc--c---CCC
Q 004766 535 LAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLR---YH--K---FTI 606 (732)
Q Consensus 535 ~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~---~~--~---~~~ 606 (732)
......+++++.+.+..+++. ...+++.++|||+||.+++.++.++|+ ++++|+..|..+... .. . ...
T Consensus 71 ~~~~~~~~~~~a~dl~~ll~~--l~~~~~~lvGhS~Gg~ia~~~a~~~p~-v~~lvl~~~~~~~~~~~~~~~~~~~~~~~ 147 (286)
T 2yys_A 71 QDPRLFTVDALVEDTLLLAEA--LGVERFGLLAHGFGAVVALEVLRRFPQ-AEGAILLAPWVNFPWLAARLAEAAGLAPL 147 (286)
T ss_dssp SCGGGCCHHHHHHHHHHHHHH--TTCCSEEEEEETTHHHHHHHHHHHCTT-EEEEEEESCCCBHHHHHHHHHHHTTCCCC
T ss_pred cCcccCcHHHHHHHHHHHHHH--hCCCcEEEEEeCHHHHHHHHHHHhCcc-hheEEEeCCccCcHHHHHHHHHHhccccc
Confidence 000023566666666655554 234689999999999999999999999 999998887642211 00 0 000
Q ss_pred --------------C-Cccccc--cCCCC---CHHHHHHHH------------hcCcccCCCCCCCCCCCCCCCCCeEEE
Q 004766 607 --------------G-HAWVSD--FGCSE---EEEEFYWLI------------KYSPLHNVRRPWEQNPDKPFQYPSTLL 654 (732)
Q Consensus 607 --------------~-~~~~~~--~g~p~---~~~~~~~~~------------~~sp~~~~~~~~~~~~~~~~~~~p~Li 654 (732)
. ..+... +..+. ..+..+... .+........ .+....+..|+||
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~i~~P~lv 223 (286)
T 2yys_A 148 PDPEENLKEALKREEPKALFDRLMFPTPRGRMAYEWLAEGAGILGSDAPGLAFLRNGLWRLDY----TPYLTPERRPLYV 223 (286)
T ss_dssp SCHHHHHHHHHHHSCHHHHHHHHHCSSHHHHHHHHHHHHHTTCCCCSHHHHHHHHTTGGGCBC----GGGCCCCSSCEEE
T ss_pred hhHHHHHHHHhccCChHHHHHhhhccCCccccChHHHHHHHhhccccccchhhcccccccCCh----hhhhhhcCCCEEE
Confidence 0 000000 00000 000000000 0000000000 0011137899999
Q ss_pred EeeCCCCCCCchHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeCCCCCCCCCchHHHHHHHHHHHHHHHH
Q 004766 655 LTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAK 724 (732)
Q Consensus 655 ~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~ 724 (732)
++|++|..+|+. +.++.+ +... ++.+++++||....... .+..+.+.+||.+
T Consensus 224 i~G~~D~~~~~~-~~~~~~-~~~~--------------~~~~i~~~gH~~~~e~p--~~~~~~i~~fl~~ 275 (286)
T 2yys_A 224 LVGERDGTSYPY-AEEVAS-RLRA--------------PIRVLPEAGHYLWIDAP--EAFEEAFKEALAA 275 (286)
T ss_dssp EEETTCTTTTTT-HHHHHH-HHTC--------------CEEEETTCCSSHHHHCH--HHHHHHHHHHHHT
T ss_pred EEeCCCCcCCHh-HHHHHh-CCCC--------------CEEEeCCCCCCcChhhH--HHHHHHHHHHHHh
Confidence 999999999999 888887 6532 67889999998643322 3455677888875
|
| >1tqh_A Carboxylesterase precursor; tetrahedral intermediate, alpha/beta hydrolase; 1.63A {Geobacillus stearothermophilus} SCOP: c.69.1.29 PDB: 1r1d_A* 4diu_A | Back alignment and structure |
|---|
Probab=99.57 E-value=1.9e-14 Score=143.86 Aligned_cols=208 Identities=17% Similarity=0.183 Sum_probs=124.1
Q ss_pred ccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCccH-HHHHHHHHHHHHHcCCCC
Q 004766 481 HPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNC-FDDFISASEYLISAGYTQ 559 (732)
Q Consensus 481 ~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~-~~D~~~~~~~l~~~~~~d 559 (732)
.|.||++||..+... .|.. ....|.++||.|+++|+||.|...... ....... .+|+.+++++|.+.++
T Consensus 16 ~~~vvllHG~~~~~~--~~~~-~~~~L~~~g~~vi~~D~~GhG~s~~~~-----~~~~~~~~~~d~~~~~~~l~~~~~-- 85 (247)
T 1tqh_A 16 ERAVLLLHGFTGNSA--DVRM-LGRFLESKGYTCHAPIYKGHGVPPEEL-----VHTGPDDWWQDVMNGYEFLKNKGY-- 85 (247)
T ss_dssp SCEEEEECCTTCCTH--HHHH-HHHHHHHTTCEEEECCCTTSSSCHHHH-----TTCCHHHHHHHHHHHHHHHHHHTC--
T ss_pred CcEEEEECCCCCChH--HHHH-HHHHHHHCCCEEEecccCCCCCCHHHh-----cCCCHHHHHHHHHHHHHHHHHcCC--
Confidence 478999999776542 3333 345566589999999999988532211 0111112 3556666777766554
Q ss_pred CCcEEEEecChhHHHHHHHHhhCCCeeeEEEE-cCCcccc-ccccc--CC-CCCccccccCCC----------------C
Q 004766 560 SRKLCIEGGSNGGLLVGACINQRPDLFGCALA-HVGVMDM-LRYHK--FT-IGHAWVSDFGCS----------------E 618 (732)
Q Consensus 560 ~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~-~~p~~d~-~~~~~--~~-~~~~~~~~~g~p----------------~ 618 (732)
+++.++|+||||.+++.++.++| ++++|+ ..|.... ..... +. ....+....+.. .
T Consensus 86 -~~~~lvG~SmGG~ia~~~a~~~p--v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (247)
T 1tqh_A 86 -EKIAVAGLSLGGVFSLKLGYTVP--IEGIVTMCAPMYIKSEETMYEGVLEYAREYKKREGKSEEQIEQEMEKFKQTPMK 162 (247)
T ss_dssp -CCEEEEEETHHHHHHHHHHTTSC--CSCEEEESCCSSCCCHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTTSCCT
T ss_pred -CeEEEEEeCHHHHHHHHHHHhCC--CCeEEEEcceeecCcchhhhHHHHHHHHHhhcccccchHHHHhhhhcccCCCHH
Confidence 58999999999999999999999 677764 3443210 00000 00 000000000000 0
Q ss_pred CHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeC
Q 004766 619 EEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIER 698 (732)
Q Consensus 619 ~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 698 (732)
.-..+..+. .+....+.+ +..|+||++|.+|..||+..+.++++.+. +...++++++
T Consensus 163 ~~~~~~~~~-~~~~~~l~~----------i~~P~Lii~G~~D~~~p~~~~~~~~~~~~------------~~~~~~~~~~ 219 (247)
T 1tqh_A 163 TLKALQELI-ADVRDHLDL----------IYAPTFVVQARHDEMINPDSANIIYNEIE------------SPVKQIKWYE 219 (247)
T ss_dssp THHHHHHHH-HHHHHTGGG----------CCSCEEEEEETTCSSSCTTHHHHHHHHCC------------CSSEEEEEET
T ss_pred HHHHHHHHH-HHHHhhccc----------CCCCEEEEecCCCCCCCcchHHHHHHhcC------------CCceEEEEeC
Confidence 000000000 011122333 78899999999999999999888876654 3347999999
Q ss_pred CCCCCCCCchHHHHHHHHHHHHHHHHH
Q 004766 699 KAGHGVGLPTQKMIDEAADRYGFMAKM 725 (732)
Q Consensus 699 ~~gH~~~~~~~~~~~~~~~~~~fl~~~ 725 (732)
++||....... ..+..+.+.+||.+.
T Consensus 220 ~~gH~~~~e~~-~~~~~~~i~~Fl~~~ 245 (247)
T 1tqh_A 220 QSGHVITLDQE-KDQLHEDIYAFLESL 245 (247)
T ss_dssp TCCSSGGGSTT-HHHHHHHHHHHHHHS
T ss_pred CCceeeccCcc-HHHHHHHHHHHHHhc
Confidence 99998754322 124556788898753
|
| >3om8_A Probable hydrolase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MES; 2.25A {Pseudomonas aeruginosa} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=99.57 E-value=3.4e-14 Score=143.67 Aligned_cols=224 Identities=12% Similarity=0.014 Sum_probs=133.7
Q ss_pred EEEccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhccc
Q 004766 455 FVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGA 534 (732)
Q Consensus 455 ~~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~ 534 (732)
.+.+.|| .+|.+...-+ +..|+||++||...... .|... ...|+ ++|.|+++|.||.|....
T Consensus 8 ~~~~~~g-~~l~y~~~G~------~~~p~lvl~hG~~~~~~--~w~~~-~~~L~-~~~~vi~~D~rG~G~S~~------- 69 (266)
T 3om8_A 8 FLATSDG-ASLAYRLDGA------AEKPLLALSNSIGTTLH--MWDAQ-LPALT-RHFRVLRYDARGHGASSV------- 69 (266)
T ss_dssp EEECTTS-CEEEEEEESC------TTSCEEEEECCTTCCGG--GGGGG-HHHHH-TTCEEEEECCTTSTTSCC-------
T ss_pred EEeccCC-cEEEEEecCC------CCCCEEEEeCCCccCHH--HHHHH-HHHhh-cCcEEEEEcCCCCCCCCC-------
Confidence 3566799 8988765532 24689999999766532 35443 45677 689999999999886532
Q ss_pred ccCCccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCccccccc---------ccC-
Q 004766 535 LAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRY---------HKF- 604 (732)
Q Consensus 535 ~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~---------~~~- 604 (732)
.....+++++.+.+..+++. ...+++.++|+|+||.+++.++.++|++++++|+..+..-.... ...
T Consensus 70 -~~~~~~~~~~a~dl~~~l~~--l~~~~~~lvGhS~Gg~va~~~A~~~P~rv~~lvl~~~~~~~~~~~~~~~~~~~~~~~ 146 (266)
T 3om8_A 70 -PPGPYTLARLGEDVLELLDA--LEVRRAHFLGLSLGGIVGQWLALHAPQRIERLVLANTSAWLGPAAQWDERIAAVLQA 146 (266)
T ss_dssp -CCSCCCHHHHHHHHHHHHHH--TTCSCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSBCCCSHHHHHHHHHHHHC
T ss_pred -CCCCCCHHHHHHHHHHHHHH--hCCCceEEEEEChHHHHHHHHHHhChHhhheeeEecCcccCCchhHHHHHHHHHHcc
Confidence 11224566666655555544 23358999999999999999999999999999986543211000 000
Q ss_pred CCCCc----cccccCCC----CCHHHHHHH----HhcCc---------c--cCCCCCCCCCCCCCCCCCeEEEEeeCCCC
Q 004766 605 TIGHA----WVSDFGCS----EEEEEFYWL----IKYSP---------L--HNVRRPWEQNPDKPFQYPSTLLLTADHDD 661 (732)
Q Consensus 605 ~~~~~----~~~~~g~p----~~~~~~~~~----~~~sp---------~--~~~~~~~~~~~~~~~~~~p~Li~~g~~D~ 661 (732)
..... ....|-.+ .+++..+.+ ....+ + ..... ....+..|+||++|++|.
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~------~l~~i~~P~Lvi~G~~D~ 220 (266)
T 3om8_A 147 EDMSETAAGFLGNWFPPALLERAEPVVERFRAMLMATNRHGLAGSFAAVRDTDLRA------QLARIERPTLVIAGAYDT 220 (266)
T ss_dssp SSSHHHHHHHHHHHSCHHHHHSCCHHHHHHHHHHHTSCHHHHHHHHHHHHTCBCTT------TGGGCCSCEEEEEETTCS
T ss_pred ccHHHHHHHHHHHhcChhhhhcChHHHHHHHHHHHhCCHHHHHHHHHHhhccchhh------HhcCCCCCEEEEEeCCCC
Confidence 00000 00000000 011111111 11111 0 00111 111478999999999999
Q ss_pred CCCchHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeCCCCCCCCCchHHHHHHHHHHHHHH
Q 004766 662 RVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFM 722 (732)
Q Consensus 662 ~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl 722 (732)
.+|+.++..+++.+.. .++++++ +||....... .+..+.+.+||
T Consensus 221 ~~~~~~~~~l~~~ip~--------------a~~~~i~-~gH~~~~e~p--~~~~~~i~~Fl 264 (266)
T 3om8_A 221 VTAASHGELIAASIAG--------------ARLVTLP-AVHLSNVEFP--QAFEGAVLSFL 264 (266)
T ss_dssp SSCHHHHHHHHHHSTT--------------CEEEEES-CCSCHHHHCH--HHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhCCC--------------CEEEEeC-CCCCccccCH--HHHHHHHHHHh
Confidence 9999998888776653 3667776 7997643222 23445566776
|
| >1ycd_A Hypothetical 27.3 kDa protein in AAP1-SMF2 intergenic region; esterase, lipase, serine hydrolase, structural genomics; HET: LI5; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.1e-14 Score=145.07 Aligned_cols=208 Identities=14% Similarity=0.031 Sum_probs=125.3
Q ss_pred CCccEEEEEcCCCCccCCCC-cChhHHHHHHhcCcEEEEEcccCCCC--------------------CchhHHhcccccC
Q 004766 479 GSHPCLLYGYGGFNISVTPS-FSVSRTILMRHLGAVFCIANIRGGGE--------------------YGEEWHKGGALAK 537 (732)
Q Consensus 479 ~~~P~vv~~hG~~~~~~~~~-~~~~~~~~l~~~G~~v~~~~~rG~g~--------------------~g~~~~~~~~~~~ 537 (732)
.+.|+||++||..++..... ....+...|.++||.|+.+|.|+... ....|....
T Consensus 3 ~~~~~vl~lHG~g~~~~~~~~~~~~l~~~l~~~g~~v~~~d~p~~~~~~~~~~~~~~~~~~~~~g~g~~~~w~~~~---- 78 (243)
T 1ycd_A 3 VQIPKLLFLHGFLQNGKVFSEKSSGIRKLLKKANVQCDYIDAPVLLEKKDLPFEMDDEKWQATLDADVNRAWFYHS---- 78 (243)
T ss_dssp CCCCEEEEECCTTCCHHHHHHHTHHHHHHHHHTTCEEEEECCSEECCGGGCSSCCCHHHHHHHHHTTCCEESSCCC----
T ss_pred CcCceEEEeCCCCccHHHHHHHHHHHHHHHhhcceEEEEcCCCeeCCCcCcccccccccccccCCCCCCcccccCC----
Confidence 35689999999866532111 11134455664699999999993211 112332210
Q ss_pred CccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCC------CeeeEEEEcCCcccccccccCCCCCccc
Q 004766 538 KQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRP------DLFGCALAHVGVMDMLRYHKFTIGHAWV 611 (732)
Q Consensus 538 ~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p------~~f~a~v~~~p~~d~~~~~~~~~~~~~~ 611 (732)
......|+.+++++|.+.-..+..+++|+|+|+||++++.++.+++ ..+++++..+++.......... +.
T Consensus 79 ~~~~~~d~~~~~~~l~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~-~~--- 154 (243)
T 1ycd_A 79 EISHELDISEGLKSVVDHIKANGPYDGIVGLSQGAALSSIITNKISELVPDHPQFKVSVVISGYSFTEPDPEHP-GE--- 154 (243)
T ss_dssp SSGGGCCCHHHHHHHHHHHHHHCCCSEEEEETHHHHHHHHHHHHHHHHSTTCCCCSEEEEESCCCCEEECTTST-TC---
T ss_pred CCcchhhHHHHHHHHHHHHHhcCCeeEEEEeChHHHHHHHHHHHHhhcccCCCCceEEEEecCCCCCCcccccc-cc---
Confidence 1123456666667666542234468999999999999999988643 2467777766654321110000 00
Q ss_pred cccCCCCCHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhcCCCCCCCCC--
Q 004766 612 SDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQT-- 689 (732)
Q Consensus 612 ~~~g~p~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~-- 689 (732)
..+.. .+ . ..+..+.. +.+|+|++||.+|..||+.++.++++.+... +
T Consensus 155 ~~~~~-----~~---~--~~~~~~~~----------~~~P~l~i~G~~D~~vp~~~~~~~~~~~~~~----------~g~ 204 (243)
T 1ycd_A 155 LRITE-----KF---R--DSFAVKPD----------MKTKMIFIYGASDQAVPSVRSKYLYDIYLKA----------QNG 204 (243)
T ss_dssp EEECG-----GG---T--TTTCCCTT----------CCCEEEEEEETTCSSSCHHHHHHHHHHHHHH----------TTT
T ss_pred cccch-----hH---H--HhccCccc----------CCCCEEEEEeCCCCccCHHHHHHHHHHhhhh----------ccc
Confidence 00000 00 0 11222222 6789999999999999999999999998763 2
Q ss_pred -CCEEEEEeCCCCCCCCCchHHHHHHHHHHHHHHHHHhCC
Q 004766 690 -NPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLGA 728 (732)
Q Consensus 690 -~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~ 728 (732)
......+++++||.+.... .....+.+||.+++..
T Consensus 205 ~~~~~~~~~~~~gH~~~~~~----~~~~~i~~fl~~~~~~ 240 (243)
T 1ycd_A 205 NKEKVLAYEHPGGHMVPNKK----DIIRPIVEQITSSLQE 240 (243)
T ss_dssp CTTTEEEEEESSSSSCCCCH----HHHHHHHHHHHHHHC-
T ss_pred cccccEEEecCCCCcCCchH----HHHHHHHHHHHHhhhh
Confidence 1123345567899876532 3667788999988764
|
| >1q0r_A RDMC, aclacinomycin methylesterase; anthracycline, hydrolase, polyketide, tailoring enzyme, structural proteomics in europe, spine; HET: AKT 1PE; 1.45A {Streptomyces purpurascens} SCOP: c.69.1.28 PDB: 1q0z_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=1.1e-13 Score=142.28 Aligned_cols=122 Identities=12% Similarity=0.068 Sum_probs=86.3
Q ss_pred cCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCC
Q 004766 459 KDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKK 538 (732)
Q Consensus 459 ~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~ 538 (732)
.|| .++.+...-+ ...|.||++||..+.. ..|...+...|+++||.|+++|.||.|..... . ....
T Consensus 8 ~~g-~~l~y~~~G~------~~~~~vvllHG~~~~~--~~w~~~~~~~L~~~G~~vi~~D~rG~G~S~~~--~---~~~~ 73 (298)
T 1q0r_A 8 SGD-VELWSDDFGD------PADPALLLVMGGNLSA--LGWPDEFARRLADGGLHVIRYDHRDTGRSTTR--D---FAAH 73 (298)
T ss_dssp ETT-EEEEEEEESC------TTSCEEEEECCTTCCG--GGSCHHHHHHHHTTTCEEEEECCTTSTTSCCC--C---TTTS
T ss_pred cCC-eEEEEEeccC------CCCCeEEEEcCCCCCc--cchHHHHHHHHHhCCCEEEeeCCCCCCCCCCC--C---CCcC
Confidence 588 8887665432 2357899999987654 34555454566768999999999998865320 0 0112
Q ss_pred ccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCcc
Q 004766 539 QNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVM 596 (732)
Q Consensus 539 ~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~ 596 (732)
..+++++.+.+..+++. ...+++.++|+|+||.+++.++.++|++++++|+..+..
T Consensus 74 ~~~~~~~a~dl~~~l~~--l~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 129 (298)
T 1q0r_A 74 PYGFGELAADAVAVLDG--WGVDRAHVVGLSMGATITQVIALDHHDRLSSLTMLLGGG 129 (298)
T ss_dssp CCCHHHHHHHHHHHHHH--TTCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCC
T ss_pred CcCHHHHHHHHHHHHHH--hCCCceEEEEeCcHHHHHHHHHHhCchhhheeEEecccC
Confidence 24566666655555554 234689999999999999999999999999998876543
|
| >1iup_A META-cleavage product hydrolase; aromatic compounds, cumene, isopropylbenzene, META-cleavage compound hydrolase; 1.60A {Pseudomonas fluorescens} SCOP: c.69.1.10 PDB: 1iun_A 1iuo_A 1uk6_A 1uk7_A 1uk8_A 1uk9_A 1uka_A 1ukb_A 2d0d_A | Back alignment and structure |
|---|
Probab=99.56 E-value=2.1e-14 Score=146.53 Aligned_cols=220 Identities=13% Similarity=0.023 Sum_probs=132.3
Q ss_pred cCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCC-CCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccC
Q 004766 459 KDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVT-PSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAK 537 (732)
Q Consensus 459 ~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~-~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~ 537 (732)
.+| .++.+... |..|.||++||....... ..|.... ..|+ +||.|+++|.||.|..... ..
T Consensus 12 ~~g-~~l~y~~~--------G~g~~vvllHG~~~~~~~~~~w~~~~-~~L~-~~~~vi~~Dl~G~G~S~~~-------~~ 73 (282)
T 1iup_A 12 AAG-VLTNYHDV--------GEGQPVILIHGSGPGVSAYANWRLTI-PALS-KFYRVIAPDMVGFGFTDRP-------EN 73 (282)
T ss_dssp ETT-EEEEEEEE--------CCSSEEEEECCCCTTCCHHHHHTTTH-HHHT-TTSEEEEECCTTSTTSCCC-------TT
T ss_pred ECC-EEEEEEec--------CCCCeEEEECCCCCCccHHHHHHHHH-Hhhc-cCCEEEEECCCCCCCCCCC-------CC
Confidence 378 78766543 234689999996432211 1344333 4466 8999999999998864321 11
Q ss_pred CccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCccccccc-------ccCCCCC--
Q 004766 538 KQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRY-------HKFTIGH-- 608 (732)
Q Consensus 538 ~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~-------~~~~~~~-- 608 (732)
...+++++.+.+..+++. ...+++.++|+|+||.+++.++.++|++++++|+..|....... .......
T Consensus 74 ~~~~~~~~a~dl~~~l~~--l~~~~~~lvGhS~GG~ia~~~A~~~P~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (282)
T 1iup_A 74 YNYSKDSWVDHIIGIMDA--LEIEKAHIVGNAFGGGLAIATALRYSERVDRMVLMGAAGTRFDVTEGLNAVWGYTPSIEN 151 (282)
T ss_dssp CCCCHHHHHHHHHHHHHH--TTCCSEEEEEETHHHHHHHHHHHHSGGGEEEEEEESCCCSCCCCCHHHHHHHTCCSCHHH
T ss_pred CCCCHHHHHHHHHHHHHH--hCCCceEEEEECHhHHHHHHHHHHChHHHHHHHeeCCccCCCCCCHHHHHHhcCCCcHHH
Confidence 123566666666655554 23468999999999999999999999999999988765321100 0000000
Q ss_pred --ccccc-cCCC--CCHHHH-------------HHHHhcC--c-------c----cCCCCCCCCCCCCCCCCCeEEEEee
Q 004766 609 --AWVSD-FGCS--EEEEEF-------------YWLIKYS--P-------L----HNVRRPWEQNPDKPFQYPSTLLLTA 657 (732)
Q Consensus 609 --~~~~~-~g~p--~~~~~~-------------~~~~~~s--p-------~----~~~~~~~~~~~~~~~~~~p~Li~~g 657 (732)
.+... +.++ ..++.. ..+.... + + ..+. .+..|+|+++|
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----------~i~~P~lii~G 221 (282)
T 1iup_A 152 MRNLLDIFAYDRSLVTDELARLRYEASIQPGFQESFSSMFPEPRQRWIDALASSDEDIK----------TLPNETLIIHG 221 (282)
T ss_dssp HHHHHHHHCSSGGGCCHHHHHHHHHHHTSTTHHHHHHHHSCSSTHHHHHHHCCCHHHHT----------TCCSCEEEEEE
T ss_pred HHHHHHHhhcCcccCCHHHHHHHHhhccChHHHHHHHHHHhccccccccccccchhhhh----------hcCCCEEEEec
Confidence 00000 0000 011110 0011100 0 0 1112 37899999999
Q ss_pred CCCCCCCchHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeCCCCCCCCCchHHHHHHHHHHHHHHHH
Q 004766 658 DHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAK 724 (732)
Q Consensus 658 ~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~ 724 (732)
++|..+|+..+.++++.+.. .++++++++||....... .+..+.+.+||.+
T Consensus 222 ~~D~~~p~~~~~~~~~~~~~--------------~~~~~i~~~gH~~~~e~p--~~~~~~i~~fl~~ 272 (282)
T 1iup_A 222 REDQVVPLSSSLRLGELIDR--------------AQLHVFGRCGHWTQIEQT--DRFNRLVVEFFNE 272 (282)
T ss_dssp TTCSSSCHHHHHHHHHHCTT--------------EEEEEESSCCSCHHHHSH--HHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHhCCC--------------CeEEEECCCCCCccccCH--HHHHHHHHHHHhc
Confidence 99999999888777665432 588999999998643222 3455667788875
|
| >1wm1_A Proline iminopeptidase; complex with inhibitor, hydrolase; HET: PTB; 2.10A {Serratia marcescens} SCOP: c.69.1.7 PDB: 1qtr_A* 1x2b_A* 1x2e_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=1e-13 Score=143.79 Aligned_cols=123 Identities=16% Similarity=0.140 Sum_probs=85.1
Q ss_pred EEEEccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcc
Q 004766 454 VFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGG 533 (732)
Q Consensus 454 ~~~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~ 533 (732)
.+++..+| .++.+...-+ ...|.||++||+++...... +..++...||.|+++|.||.|.....
T Consensus 17 ~~~~~~~g-~~l~~~~~g~------~~g~~vvllHG~~~~~~~~~----~~~~~~~~~~~vi~~D~~G~G~S~~~----- 80 (317)
T 1wm1_A 17 GWLDTGDG-HRIYWELSGN------PNGKPAVFIHGGPGGGISPH----HRQLFDPERYKVLLFDQRGCGRSRPH----- 80 (317)
T ss_dssp EEEECSSS-CEEEEEEEEC------TTSEEEEEECCTTTCCCCGG----GGGGSCTTTEEEEEECCTTSTTCBST-----
T ss_pred eEEEcCCC-cEEEEEEcCC------CCCCcEEEECCCCCcccchh----hhhhccccCCeEEEECCCCCCCCCCC-----
Confidence 34566688 8887654422 12466899999876543222 22334347999999999998865321
Q ss_pred cccCCccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCc
Q 004766 534 ALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGV 595 (732)
Q Consensus 534 ~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~ 595 (732)
......+++++.+.+..+++. ...+++.++|+|+||.+++.++.++|++++++|+..+.
T Consensus 81 -~~~~~~~~~~~~~dl~~l~~~--l~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~ 139 (317)
T 1wm1_A 81 -ASLDNNTTWHLVADIERLREM--AGVEQWLVFGGSWGSTLALAYAQTHPERVSEMVLRGIF 139 (317)
T ss_dssp -TCCTTCSHHHHHHHHHHHHHH--TTCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCC
T ss_pred -cccccccHHHHHHHHHHHHHH--cCCCcEEEEEeCHHHHHHHHHHHHCChheeeeeEeccC
Confidence 111234566777766666655 23468999999999999999999999999999987654
|
| >4g9e_A AHL-lactonase, alpha/beta hydrolase fold protein; AHL-binding; HET: C4L; 1.09A {Ochrobactrum} PDB: 4g5x_A* 4g8b_A* 4g8d_A 4g8c_A* 4g9g_A | Back alignment and structure |
|---|
Probab=99.56 E-value=4.5e-15 Score=150.39 Aligned_cols=232 Identities=13% Similarity=0.064 Sum_probs=135.3
Q ss_pred EEEEEEccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHh
Q 004766 452 HQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHK 531 (732)
Q Consensus 452 ~~~~~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~ 531 (732)
+...+++.+| ++.+... .++.|+||++||..+... .|......++. +||.|+++|+||.|.......
T Consensus 4 ~~~~~~~~~~--~~~~~~~-------~~~~~~vv~lHG~~~~~~--~~~~~~~~l~~-~g~~v~~~d~~G~G~s~~~~~- 70 (279)
T 4g9e_A 4 NYHELETSHG--RIAVRES-------EGEGAPLLMIHGNSSSGA--IFAPQLEGEIG-KKWRVIAPDLPGHGKSTDAID- 70 (279)
T ss_dssp EEEEEEETTE--EEEEEEC-------CCCEEEEEEECCTTCCGG--GGHHHHHSHHH-HHEEEEEECCTTSTTSCCCSC-
T ss_pred EEEEEEcCCc--eEEEEec-------CCCCCeEEEECCCCCchh--HHHHHHhHHHh-cCCeEEeecCCCCCCCCCCCC-
Confidence 3445666555 4443322 245689999999876542 34443334456 899999999999886543100
Q ss_pred cccccCCccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCccccccccc-CCCC---
Q 004766 532 GGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHK-FTIG--- 607 (732)
Q Consensus 532 ~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~-~~~~--- 607 (732)
.....+++|+.+.+..+++. .+.+++.++|+|+||++++.++.++|+..+.+++..|......... +...
T Consensus 71 ----~~~~~~~~~~~~~~~~~~~~--~~~~~~~lvG~S~Gg~~a~~~a~~~p~~~~~vl~~~~~~~~~~~~~~~~~~~~~ 144 (279)
T 4g9e_A 71 ----PDRSYSMEGYADAMTEVMQQ--LGIADAVVFGWSLGGHIGIEMIARYPEMRGLMITGTPPVAREEVGQGFKSGPDM 144 (279)
T ss_dssp ----HHHHSSHHHHHHHHHHHHHH--HTCCCCEEEEETHHHHHHHHHTTTCTTCCEEEEESCCCCCGGGHHHHBCCSTTG
T ss_pred ----cccCCCHHHHHHHHHHHHHH--hCCCceEEEEECchHHHHHHHHhhCCcceeEEEecCCCCCCCccchhhccchhh
Confidence 00122456666666655554 2346899999999999999999999995555555555433211100 0000
Q ss_pred -----Cc--------ccc-ccCCCCCHHHHHHHHhcCc------------------ccCCCCCCCCCCCCCCCCCeEEEE
Q 004766 608 -----HA--------WVS-DFGCSEEEEEFYWLIKYSP------------------LHNVRRPWEQNPDKPFQYPSTLLL 655 (732)
Q Consensus 608 -----~~--------~~~-~~g~p~~~~~~~~~~~~sp------------------~~~~~~~~~~~~~~~~~~~p~Li~ 655 (732)
.. +.. .+..+..+...+.+....+ ...+. .+..|+|++
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~i~~P~l~i 214 (279)
T 4g9e_A 145 ALAGQEIFSERDVESYARSTCGEPFEASLLDIVARTDGRARRIMFEKFGSGTGGNQRDIVA----------EAQLPIAVV 214 (279)
T ss_dssp GGGGCSCCCHHHHHHHHHHHHCSSCCHHHHHHHHHSCHHHHHHHHHHHHHTCBCCHHHHHH----------HCCSCEEEE
T ss_pred hhcCcccccHHHHHHHHHhhccCcccHHHHHHHHhhhccchHHHHHHhhccCCchHHHHHH----------hcCCCEEEE
Confidence 00 000 0112222222221211111 01112 267899999
Q ss_pred eeCCCCCCCchHHHHHH-HHHHHhhcCCCCCCCCCCCEEEEEeCCCCCCCCCchHHHHHHHHHHHHHHHHHhCC
Q 004766 656 TADHDDRVVPLHSLKLL-ATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLGA 728 (732)
Q Consensus 656 ~g~~D~~v~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~ 728 (732)
+|.+|..||+..+.++. +.+. .+.+++++++||....... .+..+.+.+||.+.-..
T Consensus 215 ~g~~D~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~gH~~~~~~p--~~~~~~i~~fl~~~~~~ 272 (279)
T 4g9e_A 215 NGRDEPFVELDFVSKVKFGNLW--------------EGKTHVIDNAGHAPFREAP--AEFDAYLARFIRDCTQL 272 (279)
T ss_dssp EETTCSSBCHHHHTTCCCSSBG--------------GGSCEEETTCCSCHHHHSH--HHHHHHHHHHHHHHHSS
T ss_pred EcCCCcccchHHHHHHhhccCC--------------CCeEEEECCCCcchHHhCH--HHHHHHHHHHHHHhhhh
Confidence 99999999988776654 2222 2477889999998643222 34566788899887544
|
| >2r11_A Carboxylesterase NP; 2632844, putative hydrolase, structural genomics, joint center for structural genomics, JCSG; HET: MSE PGE; 1.96A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.56 E-value=1e-13 Score=143.16 Aligned_cols=235 Identities=13% Similarity=0.092 Sum_probs=136.6
Q ss_pred EEEEEEccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCC-CCCchhHH
Q 004766 452 HQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGG-GEYGEEWH 530 (732)
Q Consensus 452 ~~~~~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~-g~~g~~~~ 530 (732)
+...++. +| .++.+...-+ +..|+||++||+.+.... |.. +...|+ +||.|+++|+||. |....
T Consensus 46 ~~~~v~~-~~-~~~~~~~~g~------~~~~~vv~lHG~~~~~~~--~~~-~~~~L~-~g~~vi~~D~~G~gG~s~~--- 110 (306)
T 2r11_A 46 KSFYIST-RF-GQTHVIASGP------EDAPPLVLLHGALFSSTM--WYP-NIADWS-SKYRTYAVDIIGDKNKSIP--- 110 (306)
T ss_dssp EEEEECC-TT-EEEEEEEESC------TTSCEEEEECCTTTCGGG--GTT-THHHHH-HHSEEEEECCTTSSSSCEE---
T ss_pred ceEEEec-CC-ceEEEEeeCC------CCCCeEEEECCCCCCHHH--HHH-HHHHHh-cCCEEEEecCCCCCCCCCC---
Confidence 3444544 45 5776655321 346899999999876533 443 345577 5999999999998 43211
Q ss_pred hcccccCCccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCccccccccc------C
Q 004766 531 KGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHK------F 604 (732)
Q Consensus 531 ~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~------~ 604 (732)
.....+++++.+.+..+++. ...+++.++|+|+||++++.++.++|++++++|+..|......... .
T Consensus 111 -----~~~~~~~~~~~~~l~~~l~~--l~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~ 183 (306)
T 2r11_A 111 -----ENVSGTRTDYANWLLDVFDN--LGIEKSHMIGLSLGGLHTMNFLLRMPERVKSAAILSPAETFLPFHHDFYKYAL 183 (306)
T ss_dssp -----CSCCCCHHHHHHHHHHHHHH--TTCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCSSBTSCCCHHHHHHHH
T ss_pred -----CCCCCCHHHHHHHHHHHHHh--cCCCceeEEEECHHHHHHHHHHHhCccceeeEEEEcCccccCcccHHHHHHHh
Confidence 11234566666666666654 2346899999999999999999999999999999998776421110 0
Q ss_pred C-CCCccc----ccc-CCC-CCHHHH---HHH-Hhc-CcccCCC---CCCC---CCCCCCCCCCeEEEEeeCCCCCCCch
Q 004766 605 T-IGHAWV----SDF-GCS-EEEEEF---YWL-IKY-SPLHNVR---RPWE---QNPDKPFQYPSTLLLTADHDDRVVPL 666 (732)
Q Consensus 605 ~-~~~~~~----~~~-g~p-~~~~~~---~~~-~~~-sp~~~~~---~~~~---~~~~~~~~~~p~Li~~g~~D~~v~~~ 666 (732)
. ....+. ..+ +.. .....+ +.. ... ..+.... .... .......+.+|+|+++|.+|..||+.
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~~~ 263 (306)
T 2r11_A 184 GLTASNGVETFLNWMMNDQNVLHPIFVKQFKAGVMWQDGSRNPNPNADGFPYVFTDEELRSARVPILLLLGEHEVIYDPH 263 (306)
T ss_dssp TTTSTTHHHHHHHHHTTTCCCSCHHHHHHHHHHHHCCSSSCCCCCCTTSSSCBCCHHHHHTCCSCEEEEEETTCCSSCHH
T ss_pred HHHHHHHHHHHHHHhhCCccccccccccccHHHHHHHHhhhhhhhhccCCCCCCCHHHHhcCCCCEEEEEeCCCcccCHH
Confidence 0 000000 000 110 010000 000 000 0000000 0000 00001136789999999999999988
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeCCCCCCCCCchHHHHHHHHHHHHHHH
Q 004766 667 HSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMA 723 (732)
Q Consensus 667 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~ 723 (732)
++.++.+++. ..+++++++++||....... .+....+.+||.
T Consensus 264 ~~~~~~~~~~-------------~~~~~~~~~~~gH~~~~e~p--~~~~~~i~~fl~ 305 (306)
T 2r11_A 264 SALHRASSFV-------------PDIEAEVIKNAGHVLSMEQP--TYVNERVMRFFN 305 (306)
T ss_dssp HHHHHHHHHS-------------TTCEEEEETTCCTTHHHHSH--HHHHHHHHHHHC
T ss_pred HHHHHHHHHC-------------CCCEEEEeCCCCCCCcccCH--HHHHHHHHHHHh
Confidence 8776665432 23588999999997643222 244556677764
|
| >2xua_A PCAD, 3-oxoadipate ENOL-lactonase; hydrolase, catechol metabolism; 1.90A {Burkholderia xenovorans} | Back alignment and structure |
|---|
Probab=99.55 E-value=4.1e-14 Score=143.01 Aligned_cols=219 Identities=12% Similarity=0.024 Sum_probs=133.5
Q ss_pred cCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCC
Q 004766 459 KDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKK 538 (732)
Q Consensus 459 ~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~ 538 (732)
.+| .++.+...-+.+ .+.|+||++||..+... .|.. +...|+ .+|.|+++|.||.|..... ..
T Consensus 9 ~~g-~~l~y~~~g~~~----~~~~~vvllHG~~~~~~--~~~~-~~~~L~-~~~~vi~~D~~G~G~S~~~--------~~ 71 (266)
T 2xua_A 9 VNG-TELHYRIDGERH----GNAPWIVLSNSLGTDLS--MWAP-QVAALS-KHFRVLRYDTRGHGHSEAP--------KG 71 (266)
T ss_dssp CSS-SEEEEEEESCSS----SCCCEEEEECCTTCCGG--GGGG-GHHHHH-TTSEEEEECCTTSTTSCCC--------SS
T ss_pred ECC-EEEEEEEcCCcc----CCCCeEEEecCccCCHH--HHHH-HHHHHh-cCeEEEEecCCCCCCCCCC--------CC
Confidence 478 888877653321 12689999999766543 4444 345567 6799999999998864321 12
Q ss_pred ccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCccccc------cc---c-cCCCC-
Q 004766 539 QNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDML------RY---H-KFTIG- 607 (732)
Q Consensus 539 ~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~------~~---~-~~~~~- 607 (732)
..+++++.+.+..+++. ...+++.++|+|+||.++..++.++|++++++|+..|..... .. . .....
T Consensus 72 ~~~~~~~~~dl~~~l~~--l~~~~~~lvGhS~Gg~va~~~A~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (266)
T 2xua_A 72 PYTIEQLTGDVLGLMDT--LKIARANFCGLSMGGLTGVALAARHADRIERVALCNTAARIGSPEVWVPRAVKARTEGMHA 149 (266)
T ss_dssp CCCHHHHHHHHHHHHHH--TTCCSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSSCSCHHHHHHHHHHHHHHCHHH
T ss_pred CCCHHHHHHHHHHHHHh--cCCCceEEEEECHHHHHHHHHHHhChhhhheeEEecCCCCCCchHHHHHHHHHHHhcChHH
Confidence 24566666655555544 233589999999999999999999999999999876643210 00 0 00000
Q ss_pred --CccccccCCC----CCHHHH-------------------HHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCC
Q 004766 608 --HAWVSDFGCS----EEEEEF-------------------YWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDR 662 (732)
Q Consensus 608 --~~~~~~~g~p----~~~~~~-------------------~~~~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~ 662 (732)
......|-.+ .+++.. ..+........+. .+..|+|+++|.+|..
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----------~i~~P~lvi~G~~D~~ 219 (266)
T 2xua_A 150 LADAVLPRWFTADYMEREPVVLAMIRDVFVHTDKEGYASNCEAIDAADLRPEAP----------GIKVPALVISGTHDLA 219 (266)
T ss_dssp HHHHHHHHHSCHHHHHHCHHHHHHHHHHHHTSCHHHHHHHHHHHHHCCCGGGGG----------GCCSCEEEEEETTCSS
T ss_pred HHHHHHHHHcCcccccCCHHHHHHHHHHHhhCCHHHHHHHHHHHhccCchhhhc----------cCCCCEEEEEcCCCCc
Confidence 0000011000 011111 1111222222222 3789999999999999
Q ss_pred CCchHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeCCCCCCCCCchHHHHHHHHHHHHHHH
Q 004766 663 VVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMA 723 (732)
Q Consensus 663 v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~ 723 (732)
+|+..+.++.+.+.. .++++++ +||....... .+..+.+.+||.
T Consensus 220 ~~~~~~~~~~~~~~~--------------~~~~~~~-~gH~~~~e~p--~~~~~~i~~fl~ 263 (266)
T 2xua_A 220 ATPAQGRELAQAIAG--------------ARYVELD-ASHISNIERA--DAFTKTVVDFLT 263 (266)
T ss_dssp SCHHHHHHHHHHSTT--------------CEEEEES-CCSSHHHHTH--HHHHHHHHHHHT
T ss_pred CCHHHHHHHHHhCCC--------------CEEEEec-CCCCchhcCH--HHHHHHHHHHHH
Confidence 999888777665542 3788899 9998643222 244556677774
|
| >1j1i_A META cleavage compound hydrolase; carbazole degradation, META cleavage product hydrolase, histidine tagged protein, alpha/beta-hydrolase; 1.86A {Janthinobacterium} SCOP: c.69.1.10 | Back alignment and structure |
|---|
Probab=99.55 E-value=2.8e-14 Score=146.76 Aligned_cols=225 Identities=15% Similarity=0.101 Sum_probs=133.2
Q ss_pred cCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCC-CccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccC
Q 004766 459 KDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGF-NISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAK 537 (732)
Q Consensus 459 ~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~-~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~ 537 (732)
.+| .++.+... ++.|.||++||.. +......|... ...|. ++|.|+++|+||.|.... ..
T Consensus 23 ~~g-~~l~y~~~--------g~g~~vvllHG~~~~~~~~~~~~~~-~~~L~-~~~~vi~~Dl~G~G~S~~--------~~ 83 (296)
T 1j1i_A 23 AGG-VETRYLEA--------GKGQPVILIHGGGAGAESEGNWRNV-IPILA-RHYRVIAMDMLGFGKTAK--------PD 83 (296)
T ss_dssp ETT-EEEEEEEE--------CCSSEEEEECCCSTTCCHHHHHTTT-HHHHT-TTSEEEEECCTTSTTSCC--------CS
T ss_pred ECC-EEEEEEec--------CCCCeEEEECCCCCCcchHHHHHHH-HHHHh-hcCEEEEECCCCCCCCCC--------CC
Confidence 478 88776532 2347899999974 22212234433 35566 569999999999886531 11
Q ss_pred CccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCccccccccc-C----CCCCcc--
Q 004766 538 KQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHK-F----TIGHAW-- 610 (732)
Q Consensus 538 ~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~-~----~~~~~~-- 610 (732)
...+++++.+.+..+++.-.. .+++.++|+|+||++++.++.++|++++++|+..|......... . .....+
T Consensus 84 ~~~~~~~~~~dl~~~l~~l~~-~~~~~lvGhS~Gg~ia~~~A~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (296)
T 1j1i_A 84 IEYTQDRRIRHLHDFIKAMNF-DGKVSIVGNSMGGATGLGVSVLHSELVNALVLMGSAGLVVEIHEDLRPIINYDFTREG 162 (296)
T ss_dssp SCCCHHHHHHHHHHHHHHSCC-SSCEEEEEEHHHHHHHHHHHHHCGGGEEEEEEESCCBCCCC----------CCSCHHH
T ss_pred CCCCHHHHHHHHHHHHHhcCC-CCCeEEEEEChhHHHHHHHHHhChHhhhEEEEECCCCCCCCCCchHHHHhcccCCchH
Confidence 123556666655555544111 26899999999999999999999999999998877542110000 0 000000
Q ss_pred ----ccc-cCCC--CCHHHH-------------HHHHh----c---C-cc---cCCCCCCCCCCCCCCCCCeEEEEeeCC
Q 004766 611 ----VSD-FGCS--EEEEEF-------------YWLIK----Y---S-PL---HNVRRPWEQNPDKPFQYPSTLLLTADH 659 (732)
Q Consensus 611 ----~~~-~g~p--~~~~~~-------------~~~~~----~---s-p~---~~~~~~~~~~~~~~~~~~p~Li~~g~~ 659 (732)
... +.++ ..++.. ..+.. . . .. ..+. .+..|+|+++|.+
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----------~i~~P~Lii~G~~ 232 (296)
T 1j1i_A 163 MVHLVKALTNDGFKIDDAMINSRYTYATDEATRKAYVATMQWIREQGGLFYDPEFIR----------KVQVPTLVVQGKD 232 (296)
T ss_dssp HHHHHHHHSCTTCCCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHTSSBCCHHHHT----------TCCSCEEEEEETT
T ss_pred HHHHHHHhccCcccccHHHHHHHHHHhhCcchhhHHHHHHHHHHhcccccccHHHhh----------cCCCCEEEEEECC
Confidence 000 1111 111110 00110 0 0 00 1122 3789999999999
Q ss_pred CCCCCchHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeCCCCCCCCCchHHHHHHHHHHHHHHHHHhCCC
Q 004766 660 DDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLGAS 729 (732)
Q Consensus 660 D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~~ 729 (732)
|..||+..+.++.+.+. ..++.+++++||....... .+..+.+.+||.+.++..
T Consensus 233 D~~~~~~~~~~~~~~~~--------------~~~~~~i~~~gH~~~~e~p--~~~~~~i~~fl~~~~~~~ 286 (296)
T 1j1i_A 233 DKVVPVETAYKFLDLID--------------DSWGYIIPHCGHWAMIEHP--EDFANATLSFLSLRVDIT 286 (296)
T ss_dssp CSSSCHHHHHHHHHHCT--------------TEEEEEESSCCSCHHHHSH--HHHHHHHHHHHHHC----
T ss_pred CcccCHHHHHHHHHHCC--------------CCEEEEECCCCCCchhcCH--HHHHHHHHHHHhccCCcC
Confidence 99999988887766543 2578899999998643222 345567889999887654
|
| >2b61_A Homoserine O-acetyltransferase; acyl-enzyme, aspartate pathway, coenzyme A, structure-functi studies, alpha-beta hydrolase fold; 1.65A {Haemophilus influenzae} SCOP: c.69.1.40 | Back alignment and structure |
|---|
Probab=99.55 E-value=2.3e-14 Score=152.62 Aligned_cols=114 Identities=15% Similarity=0.110 Sum_probs=78.0
Q ss_pred ccEEEEEcCCCCccCCC-------CcChhHH--HHHHhcCcEEEEEcccC-CCCC-chhHHhc--cc---ccCCccHHHH
Q 004766 481 HPCLLYGYGGFNISVTP-------SFSVSRT--ILMRHLGAVFCIANIRG-GGEY-GEEWHKG--GA---LAKKQNCFDD 544 (732)
Q Consensus 481 ~P~vv~~hG~~~~~~~~-------~~~~~~~--~~l~~~G~~v~~~~~rG-~g~~-g~~~~~~--~~---~~~~~~~~~D 544 (732)
.|+||++||..+..... .|..... ..|+++||.|+++|+|| .|+. +..-... +. ......+++|
T Consensus 59 ~~~vvllHG~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~g~~vi~~D~~G~~g~s~~~~~~~~~~g~~~~~~~~~~~~~~ 138 (377)
T 2b61_A 59 NNAVLICHALTGDAEPYFDDGRDGWWQNFMGAGLALDTDRYFFISSNVLGGCKGTTGPSSINPQTGKPYGSQFPNIVVQD 138 (377)
T ss_dssp CCEEEEECCTTCCSCSCCSSSCCCTTGGGEETTSSEETTTCEEEEECCTTCSSSSSCTTSBCTTTSSBCGGGCCCCCHHH
T ss_pred CCeEEEeCCCCCccccccccccchhhhhccCcccccccCCceEEEecCCCCCCCCCCCcccCccccccccccCCcccHHH
Confidence 68999999998775431 1332211 13534899999999999 3432 2210000 00 0011346788
Q ss_pred HHHHHHHHHHcCCCCCCcEE-EEecChhHHHHHHHHhhCCCeeeEEEEcCCcc
Q 004766 545 FISASEYLISAGYTQSRKLC-IEGGSNGGLLVGACINQRPDLFGCALAHVGVM 596 (732)
Q Consensus 545 ~~~~~~~l~~~~~~d~~~i~-i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~ 596 (732)
+.+.+..+++. .+.+++. ++|+|+||++++.++.++|++++++|+..|..
T Consensus 139 ~~~~l~~~l~~--l~~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 189 (377)
T 2b61_A 139 IVKVQKALLEH--LGISHLKAIIGGSFGGMQANQWAIDYPDFMDNIVNLCSSI 189 (377)
T ss_dssp HHHHHHHHHHH--TTCCCEEEEEEETHHHHHHHHHHHHSTTSEEEEEEESCCS
T ss_pred HHHHHHHHHHH--cCCcceeEEEEEChhHHHHHHHHHHCchhhheeEEeccCc
Confidence 88888877765 3446887 99999999999999999999999999988854
|
| >1hkh_A Gamma lactamase; hydrolase, alpha/beta hydrolase, CO-factor free haloperoxidase,; 1.73A {Microbacterium} SCOP: c.69.1.12 PDB: 1hl7_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=4.7e-14 Score=143.52 Aligned_cols=116 Identities=12% Similarity=-0.009 Sum_probs=79.1
Q ss_pred ccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccC
Q 004766 458 SKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAK 537 (732)
Q Consensus 458 s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~ 537 (732)
+.+| .++.+... + ..|.||++||..+... .|... ...|.++||.|+++|+||.|..... .
T Consensus 9 ~~~g-~~l~y~~~---g-----~~~pvvllHG~~~~~~--~~~~~-~~~L~~~g~~vi~~D~~G~G~S~~~--------~ 68 (279)
T 1hkh_A 9 NSTP-IELYYEDQ---G-----SGQPVVLIHGYPLDGH--SWERQ-TRELLAQGYRVITYDRRGFGGSSKV--------N 68 (279)
T ss_dssp TTEE-EEEEEEEE---S-----SSEEEEEECCTTCCGG--GGHHH-HHHHHHTTEEEEEECCTTSTTSCCC--------S
T ss_pred CCCC-eEEEEEec---C-----CCCcEEEEcCCCchhh--HHhhh-HHHHHhCCcEEEEeCCCCCCCCCCC--------C
Confidence 3467 67654432 1 2345999999876542 34443 4556658999999999998865321 1
Q ss_pred CccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCC-eeeEEEEcCCc
Q 004766 538 KQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPD-LFGCALAHVGV 595 (732)
Q Consensus 538 ~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~-~f~a~v~~~p~ 595 (732)
...+++++.+.+..+++. .+.+++.++|||+||.+++.++.++|+ +++++|+..|+
T Consensus 69 ~~~~~~~~~~dl~~~l~~--l~~~~~~lvGhS~Gg~va~~~a~~~p~~~v~~lvl~~~~ 125 (279)
T 1hkh_A 69 TGYDYDTFAADLHTVLET--LDLRDVVLVGFSMGTGELARYVARYGHERVAKLAFLASL 125 (279)
T ss_dssp SCCSHHHHHHHHHHHHHH--HTCCSEEEEEETHHHHHHHHHHHHHCSTTEEEEEEESCC
T ss_pred CCCCHHHHHHHHHHHHHh--cCCCceEEEEeChhHHHHHHHHHHcCccceeeEEEEccC
Confidence 223445554444444433 234689999999999999999999999 99999988764
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.54 E-value=2.1e-12 Score=131.45 Aligned_cols=232 Identities=9% Similarity=0.010 Sum_probs=155.4
Q ss_pred ceEEEEEEECCCCceecccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCCcccEEEEEECCC-CCCCCeE
Q 004766 156 DWATIKLMRIEDQIVEADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGT-KQSEDIL 234 (732)
Q Consensus 156 e~~~i~v~dl~~g~~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt-~~~~~~~ 234 (732)
...+|++||+.+++.............++|||||+.|++.. ...|+++++.+ +... .
T Consensus 20 ~~~~i~~~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~--------------------~~~i~~~d~~~~~~~~--~ 77 (297)
T 2ojh_A 20 MRSSIEIFNIRTRKMRVVWQTPELFEAPNWSPDGKYLLLNS--------------------EGLLYRLSLAGDPSPE--K 77 (297)
T ss_dssp CCEEEEEEETTTTEEEEEEEESSCCEEEEECTTSSEEEEEE--------------------TTEEEEEESSSCCSCE--E
T ss_pred cceeEEEEeCCCCceeeeccCCcceEeeEECCCCCEEEEEc--------------------CCeEEEEeCCCCCCce--E
Confidence 34799999999988553322222357899999999999864 12699999987 5322 2
Q ss_pred EEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCCCCcEEeeecccceEEEEEecCC
Q 004766 235 CWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDT 314 (732)
Q Consensus 235 v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dg~ 314 (732)
+.... .......+.|||||++|++...... ....||.+++.++. ...+..........|+|||+
T Consensus 78 ~~~~~-~~~~~~~~~~spdg~~l~~~~~~~~-~~~~l~~~~~~~~~--------------~~~~~~~~~~~~~~~spdg~ 141 (297)
T 2ojh_A 78 VDTGF-ATICNNDHGISPDGALYAISDKVEF-GKSAIYLLPSTGGT--------------PRLMTKNLPSYWHGWSPDGK 141 (297)
T ss_dssp CCCTT-CCCBCSCCEECTTSSEEEEEECTTT-SSCEEEEEETTCCC--------------CEECCSSSSEEEEEECTTSS
T ss_pred ecccc-ccccccceEECCCCCEEEEEEeCCC-CcceEEEEECCCCc--------------eEEeecCCCccceEECCCCC
Confidence 32222 1123457899999999988874322 25779999987642 22333222222336999999
Q ss_pred eEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecCC-EEEEEEecCCeeEEEEEeCCCCceeeeccccc
Q 004766 315 VFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLN-QMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEI 393 (732)
Q Consensus 315 ~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~-~l~~~~~~~g~~~l~~~d~~~g~~~~~l~~~~ 393 (732)
.|++....++ ..+|+.+++.++. ...+..+. ..+..+.|++++ .+++....++..+|+.+++.+++ ...+....
T Consensus 142 ~l~~~~~~~~-~~~l~~~~~~~~~-~~~~~~~~--~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~ 216 (297)
T 2ojh_A 142 SFTYCGIRDQ-VFDIYSMDIDSGV-ETRLTHGE--GRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSS-VERITDSA 216 (297)
T ss_dssp EEEEEEEETT-EEEEEEEETTTCC-EEECCCSS--SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC-EEECCCCS
T ss_pred EEEEEECCCC-ceEEEEEECCCCc-ceEcccCC--CccccceECCCCCEEEEEecCCCCccEEEECCCCCC-cEEEecCC
Confidence 9987765443 4689999887765 44444433 457788998765 46666656777788888876444 36666555
Q ss_pred ceeeEeecccCCcEEEEEEecCC-------CCceEEEEECCCCC
Q 004766 394 GSVNAISARREDSVVFISFTSFL-------IPGIVYQCNLKTET 430 (732)
Q Consensus 394 g~v~~~~~s~d~~~l~~~~ss~~-------~p~~~y~~d~~~~~ 430 (732)
..+..+.++++++.+++...... ....++.+|+.+++
T Consensus 217 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~ 260 (297)
T 2ojh_A 217 YGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGN 260 (297)
T ss_dssp EEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCS
T ss_pred cccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCC
Confidence 66777889999998877655432 23679999998875
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=2.4e-12 Score=155.94 Aligned_cols=290 Identities=9% Similarity=-0.002 Sum_probs=175.8
Q ss_pred CCCCCcEEeCCEEEEEEEcCCCCeeEEEEEeCCCCCceEEeCCCCcCCCCCEEEEeEEECCCCcEEEEEEecc-CCceEE
Q 004766 81 PRYDAPFKRGNKYFYFHNTGLQPQSVLYVQDSLDAKAKVLLDPNTLSDDGTAALIKVSVSEDAKYLAYALSYS-GSDWAT 159 (732)
Q Consensus 81 ~~~~~p~~~g~~~~~~~~~~~~~~~~l~~r~~~~~~~~~l~D~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~-G~e~~~ 159 (732)
..+..|.+.|++++|... ..||+.+..+++.+.|... ...+..++|||||++|||+.... .....+
T Consensus 15 ~~~~~~~~S~~~iaf~~~------~~l~~~~~~gg~~~~lt~~-------~~~v~~~~~SPDG~~la~~s~~~~~~~~~~ 81 (1045)
T 1k32_A 15 NLLLNPDIHGDRIIFVCC------DDLWEHDLKSGSTRKIVSN-------LGVINNARFFPDGRKIAIRVMRGSSLNTAD 81 (1045)
T ss_dssp CCCEEEEEETTEEEEEET------TEEEEEETTTCCEEEEECS-------SSEEEEEEECTTSSEEEEEEEESTTCCEEE
T ss_pred ceEeCcEEeCCEEEEEEC------CcEEEEECCCCcEEEeeeC-------CCcccCeEECCCCCEEEEEEeeccCCCCCe
Confidence 445566667888888764 2488887766666666542 23467899999999999998651 012369
Q ss_pred EEEEECCCCceecccccceee-------eeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCCcccEEEEEECCCCCCCC
Q 004766 160 IKLMRIEDQIVEADALSWFKF-------SSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSED 232 (732)
Q Consensus 160 i~v~dl~~g~~~~~~~~~~~~-------~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~ 232 (732)
|++||+++|+....+...... ..++|||||+ |+|+...... .....+||.+++.++....
T Consensus 82 i~~~d~~~g~~~~lt~~~~~~~~~~~~~~~~~~SpDg~-ll~~~~~~~~------------~~~~~~l~~~~~~~g~~~~ 148 (1045)
T 1k32_A 82 LYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGN-LIISTDAMQP------------FSSMTCLYRVENDGINFVP 148 (1045)
T ss_dssp EEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCC-EEEEECTTSS------------STTCCEEEEEEGGGTEEEE
T ss_pred EEEEECCCCCeEEcccCCCcccccccccccccCCCCCE-EEEEECCcCC------------CcccceEEEEECCCCCeEE
Confidence 999999999855444333333 6799999999 7777643211 1122345555553321100
Q ss_pred e-------------EEEe-------------------------c-------CCCCeeEEEeEEecCCcEEEEEEecCCcc
Q 004766 233 I-------------LCWK-------------------------D-------PEHPKYIFSGHVTEDGQYLVMCIEENCDP 267 (732)
Q Consensus 233 ~-------------~v~~-------------------------~-------~~~~~~~~~~~~SpDg~~l~~~~~~~~~~ 267 (732)
+ +++. . ..+......+.|++| .+++.+....
T Consensus 149 l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d--~l~~~~~~dg-- 224 (1045)
T 1k32_A 149 LNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH--RIYFITDIDG-- 224 (1045)
T ss_dssp CCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT--EEEEEECTTS--
T ss_pred ecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCC--EEEEEEeccC--
Confidence 0 0000 0 011122345678877 5666654332
Q ss_pred eEEEEEEeCCCCCCCcccccccCCCCCcEEeeecccceEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCC
Q 004766 268 VNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEA 347 (732)
Q Consensus 268 ~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~ 347 (732)
...||.+++.++. .+.++.........|+|||+.|++.. ...|+.+++.+.. ...+..+.
T Consensus 225 ~~~l~~~~~~g~~--------------~~~l~~~~~~~~~~~SpDG~~la~~~-----~~~i~~~d~~~~~-l~~l~~~~ 284 (1045)
T 1k32_A 225 FGQIYSTDLDGKD--------------LRKHTSFTDYYPRHLNTDGRRILFSK-----GGSIYIFNPDTEK-IEKIEIGD 284 (1045)
T ss_dssp SCEEEEEETTSCS--------------CEECCCCCSSCEEEEEESSSCEEEEE-----TTEEEEECTTTCC-EEECCCCC
T ss_pred ceEEEEEeCCCCc--------------ceEecCCCCcceeeEcCCCCEEEEEe-----CCEEEEecCCceE-eeeeccCc
Confidence 4678988876532 23333322222346999999988864 3479999985443 33332211
Q ss_pred ---------CCCceeEEEEe-cCCE-EEEEEecCCeeEEEEEeCCCCceeeecccccc-eeeEeecccCCcEEEEEEecC
Q 004766 348 ---------ERDVLESATAV-NLNQ-MIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIG-SVNAISARREDSVVFISFTSF 415 (732)
Q Consensus 348 ---------~~~~l~~~~~~-~~~~-l~~~~~~~g~~~l~~~d~~~g~~~~~l~~~~g-~v~~~~~s~d~~~l~~~~ss~ 415 (732)
....+..+.|+ +++. +++.. + ..|+++++.+++. ..+..+.+ .+..+.++ |++.+++...
T Consensus 285 ~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~--~--~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~s-dg~~l~~~s~-- 356 (1045)
T 1k32_A 285 LESPEDRIISIPSKFAEDFSPLDGDLIAFVS--R--GQAFIQDVSGTYV-LKVPEPLRIRYVRRGGD-TKVAFIHGTR-- 356 (1045)
T ss_dssp CCBCCSEEEECGGGGEEEEEECGGGCEEEEE--T--TEEEEECTTSSBE-EECSCCSCEEEEEECSS-SEEEEEEEET--
T ss_pred ccccccccccccccceeeecCCCCCEEEEEE--c--CEEEEEcCCCCce-EEccCCCcceEEeeeEc-CCCeEEEEEC--
Confidence 01246788999 8654 54444 2 4799999986665 45654445 67788888 8877765433
Q ss_pred CCCceEE-EEECCCCC
Q 004766 416 LIPGIVY-QCNLKTET 430 (732)
Q Consensus 416 ~~p~~~y-~~d~~~~~ 430 (732)
...++ .+|+.+++
T Consensus 357 --~~~l~~~~d~~~~~ 370 (1045)
T 1k32_A 357 --EGDFLGIYDYRTGK 370 (1045)
T ss_dssp --TEEEEEEEETTTCC
T ss_pred --CCceEEEEECCCCC
Confidence 45888 88987764
|
| >3bdv_A Uncharacterized protein DUF1234; DUF1234 family protein, alpha/beta-hydrolases fold, structur genomics; HET: MSE; 1.66A {Pectobacterium atrosepticum SCRI1043} | Back alignment and structure |
|---|
Probab=99.54 E-value=9.6e-14 Score=132.59 Aligned_cols=174 Identities=11% Similarity=-0.062 Sum_probs=118.9
Q ss_pred CCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCccHHHHHHHHHHHHHHcCCC
Q 004766 479 GSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYT 558 (732)
Q Consensus 479 ~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~ 558 (732)
++.|.||++||..+.... .|...+...+. .+ +.++.+|.+ ...++++.+.+..+++. .
T Consensus 15 g~~~~vv~~HG~~~~~~~-~~~~~~~~~~~-~~---~~v~~~~~~---------------~~~~~~~~~~~~~~~~~--~ 72 (191)
T 3bdv_A 15 SQQLTMVLVPGLRDSDDE-HWQSHWERRFP-HW---QRIRQREWY---------------QADLDRWVLAIRRELSV--C 72 (191)
T ss_dssp HTTCEEEEECCTTCCCTT-SHHHHHHHHCT-TS---EECCCSCCS---------------SCCHHHHHHHHHHHHHT--C
T ss_pred CCCceEEEECCCCCCchh-hHHHHHHHhcC-Ce---EEEeccCCC---------------CcCHHHHHHHHHHHHHh--c
Confidence 456899999998765422 33333322233 33 345666632 23456777777666664 2
Q ss_pred CCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCcccccccccCCCCCccccccCCCCCHHHHHHHHhcCcccCCCCC
Q 004766 559 QSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRP 638 (732)
Q Consensus 559 d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~sp~~~~~~~ 638 (732)
+ +++.++|+|+||++++.++.++|++++++|+..|........ +.. ....+
T Consensus 73 ~-~~~~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~--------------~~~-------------~~~~~- 123 (191)
T 3bdv_A 73 T-QPVILIGHSFGALAACHVVQQGQEGIAGVMLVAPAEPMRFEI--------------DDR-------------IQASP- 123 (191)
T ss_dssp S-SCEEEEEETHHHHHHHHHHHTTCSSEEEEEEESCCCGGGGTC--------------TTT-------------SCSSC-
T ss_pred C-CCeEEEEEChHHHHHHHHHHhcCCCccEEEEECCCccccccC--------------ccc-------------ccccc-
Confidence 3 799999999999999999999999999999999876543111 000 12222
Q ss_pred CCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeCCCCCCCCCchH-HHHHHHHH
Q 004766 639 WEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQ-KMIDEAAD 717 (732)
Q Consensus 639 ~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~-~~~~~~~~ 717 (732)
+..|+|+++|.+|..||+.++.++++.+ . .++++++++||....... ..-+..+.
T Consensus 124 ---------~~~P~lii~g~~D~~~~~~~~~~~~~~~-~--------------~~~~~~~~~gH~~~~~~~~~~~~~~~~ 179 (191)
T 3bdv_A 124 ---------LSVPTLTFASHNDPLMSFTRAQYWAQAW-D--------------SELVDVGEAGHINAEAGFGPWEYGLKR 179 (191)
T ss_dssp ---------CSSCEEEEECSSBTTBCHHHHHHHHHHH-T--------------CEEEECCSCTTSSGGGTCSSCHHHHHH
T ss_pred ---------CCCCEEEEecCCCCcCCHHHHHHHHHhc-C--------------CcEEEeCCCCcccccccchhHHHHHHH
Confidence 6789999999999999999988888776 2 478899999999754210 11234467
Q ss_pred HHHHHHHHhC
Q 004766 718 RYGFMAKMLG 727 (732)
Q Consensus 718 ~~~fl~~~l~ 727 (732)
+.+||.+..|
T Consensus 180 i~~fl~~~~~ 189 (191)
T 3bdv_A 180 LAEFSEILIP 189 (191)
T ss_dssp HHHHHHTTCS
T ss_pred HHHHHHHhcc
Confidence 7788876543
|
| >2puj_A 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrola; C-C bond hydrolase, hydrolase; HET: HPZ; 1.57A {Burkholderia xenovorans} PDB: 2pu7_A* 3v1m_A* 3v1l_A* 2puh_A* 3v1n_A* 3v1k_A* 2og1_A 2pu5_A 2rhw_A* 2rht_A* 2ri6_A | Back alignment and structure |
|---|
Probab=99.53 E-value=5e-14 Score=144.11 Aligned_cols=213 Identities=13% Similarity=-0.016 Sum_probs=126.6
Q ss_pred CccEEEEEcCCC-CccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCccHHHHHHHHHHHHHHcCCC
Q 004766 480 SHPCLLYGYGGF-NISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYT 558 (732)
Q Consensus 480 ~~P~vv~~hG~~-~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~ 558 (732)
+.|.||++||.. +......|.......|. .+|.|+++|.||.|..... .....+++++.+.+..+++. .
T Consensus 32 ~g~~vvllHG~~~~~~~~~~w~~~~~~~L~-~~~~vi~~D~~G~G~S~~~-------~~~~~~~~~~a~dl~~~l~~--l 101 (286)
T 2puj_A 32 NGETVIMLHGGGPGAGGWSNYYRNVGPFVD-AGYRVILKDSPGFNKSDAV-------VMDEQRGLVNARAVKGLMDA--L 101 (286)
T ss_dssp CSSEEEEECCCSTTCCHHHHHTTTHHHHHH-TTCEEEEECCTTSTTSCCC-------CCSSCHHHHHHHHHHHHHHH--T
T ss_pred CCCcEEEECCCCCCCCcHHHHHHHHHHHHh-ccCEEEEECCCCCCCCCCC-------CCcCcCHHHHHHHHHHHHHH--h
Confidence 357899999974 32222234443314566 5699999999998864321 11134677777766666654 2
Q ss_pred CCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCccccccccc------------C--CCCCccc----cc-cCCC--
Q 004766 559 QSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHK------------F--TIGHAWV----SD-FGCS-- 617 (732)
Q Consensus 559 d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~------------~--~~~~~~~----~~-~g~p-- 617 (732)
..+++.++|+|+||.+++.++.++|++++++|+..|......... . ....... .. +.++
T Consensus 102 ~~~~~~lvGhS~GG~va~~~A~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (286)
T 2puj_A 102 DIDRAHLVGNAMGGATALNFALEYPDRIGKLILMGPGGLGPSMFAPMPMEGIKLLFKLYAEPSYETLKQMLQVFLYDQSL 181 (286)
T ss_dssp TCCCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCSCCCCCSSSCSSCHHHHHHHHHHHSCCHHHHHHHHHHHCSCGGG
T ss_pred CCCceEEEEECHHHHHHHHHHHhChHhhheEEEECccccCCCcccccchhhHHHHHHHhhCCcHHHHHHHHHHHhcCCcc
Confidence 346899999999999999999999999999998876532110000 0 0000000 00 0111
Q ss_pred CCHHHH--------------HHHHh-c--Cc--ccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHh
Q 004766 618 EEEEEF--------------YWLIK-Y--SP--LHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYV 678 (732)
Q Consensus 618 ~~~~~~--------------~~~~~-~--sp--~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~ 678 (732)
..++.. ..+.. + .+ ...... ....+..|+||++|++|..+|+..+.++++.+.
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~l~~i~~P~Lii~G~~D~~~p~~~~~~~~~~~~-- 253 (286)
T 2puj_A 182 ITEELLQGRWEAIQRQPEHLKNFLISAQKAPLSTWDVTA------RLGEIKAKTFITWGRDDRFVPLDHGLKLLWNID-- 253 (286)
T ss_dssp CCHHHHHHHHHHHHHCHHHHHHHHHHHHHSCGGGGCCGG------GGGGCCSCEEEEEETTCSSSCTHHHHHHHHHSS--
T ss_pred CCHHHHHHHHHHhhcCHHHHHHHHHHHhhhhccccchhh------HHhhcCCCEEEEEECCCCccCHHHHHHHHHHCC--
Confidence 011111 11100 0 00 000100 011378999999999999999998887766543
Q ss_pred hcCCCCCCCCCCCEEEEEeCCCCCCCCCchHHHHHHHHHHHHHHHH
Q 004766 679 LCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAK 724 (732)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~ 724 (732)
..++++++++||....... .+..+.+.+||.+
T Consensus 254 ------------~~~~~~i~~~gH~~~~e~p--~~~~~~i~~fl~~ 285 (286)
T 2puj_A 254 ------------DARLHVFSKCGAWAQWEHA--DEFNRLVIDFLRH 285 (286)
T ss_dssp ------------SEEEEEESSCCSCHHHHTH--HHHHHHHHHHHHH
T ss_pred ------------CCeEEEeCCCCCCccccCH--HHHHHHHHHHHhc
Confidence 2588899999998643222 2445567788864
|
| >3g9x_A Haloalkane dehalogenase; alpha/beta hydrolase, helical CAP domain, catalytic triad (A His272, Glu130), mutant, I135F, haloalkanes; 0.95A {Rhodococcus SP} SCOP: c.69.1.8 PDB: 3fwh_A 3fbw_A 3rlt_A 3rk4_A 1bn6_A 1bn7_A 4fwb_A 1cqw_A 3sk0_A 2v9z_A | Back alignment and structure |
|---|
Probab=99.53 E-value=1.3e-14 Score=148.60 Aligned_cols=116 Identities=13% Similarity=0.051 Sum_probs=86.1
Q ss_pred cCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCC
Q 004766 459 KDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKK 538 (732)
Q Consensus 459 ~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~ 538 (732)
.+| .++.+...-+ ...|+||++||..+... .|.. +...|+ +||.|+++|.||.|.... ...
T Consensus 17 ~~g-~~l~~~~~g~------~~~~~vl~lHG~~~~~~--~~~~-~~~~l~-~~~~v~~~d~~G~G~s~~--------~~~ 77 (299)
T 3g9x_A 17 VLG-ERMHYVDVGP------RDGTPVLFLHGNPTSSY--LWRN-IIPHVA-PSHRCIAPDLIGMGKSDK--------PDL 77 (299)
T ss_dssp ETT-EEEEEEEESC------SSSCCEEEECCTTCCGG--GGTT-THHHHT-TTSCEEEECCTTSTTSCC--------CCC
T ss_pred eCC-eEEEEEecCC------CCCCEEEEECCCCccHH--HHHH-HHHHHc-cCCEEEeeCCCCCCCCCC--------CCC
Confidence 378 8887765532 23578999999877643 3443 345566 799999999999886432 112
Q ss_pred ccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCc
Q 004766 539 QNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGV 595 (732)
Q Consensus 539 ~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~ 595 (732)
..+++++.+.+..+++. .+.+++.++|+|+||+++..++.++|++++++|+..+.
T Consensus 78 ~~~~~~~~~~~~~~~~~--~~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvl~~~~ 132 (299)
T 3g9x_A 78 DYFFDDHVRYLDAFIEA--LGLEEVVLVIHDWGSALGFHWAKRNPERVKGIACMEFI 132 (299)
T ss_dssp CCCHHHHHHHHHHHHHH--TTCCSEEEEEEHHHHHHHHHHHHHSGGGEEEEEEEEEC
T ss_pred cccHHHHHHHHHHHHHH--hCCCcEEEEEeCccHHHHHHHHHhcchheeEEEEecCC
Confidence 45677777777777665 34568999999999999999999999999999887643
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=1.8e-12 Score=150.33 Aligned_cols=257 Identities=11% Similarity=0.072 Sum_probs=164.6
Q ss_pred ECCCCcEEEEEEeccCCceEEEEEEECCCCcee--cc--c--ccc-eeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCc
Q 004766 139 VSEDAKYLAYALSYSGSDWATIKLMRIEDQIVE--AD--A--LSW-FKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTE 211 (732)
Q Consensus 139 ~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~--~~--~--~~~-~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~ 211 (732)
++|||++++|....+|.....||+++..+|+.. .+ . ... ....+++|||||+.|+|+....
T Consensus 79 p~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~------------ 146 (710)
T 2xdw_A 79 HFKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSAS------------ 146 (710)
T ss_dssp CEEETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEET------------
T ss_pred CEEECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCC------------
Confidence 349999999999888876678999998777532 11 1 111 1347899999999999997643
Q ss_pred ccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCC-----------cceEEEEEEeCCCCC
Q 004766 212 TDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENC-----------DPVNKVYYCDLSALP 280 (732)
Q Consensus 212 ~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~-----------~~~~~l~~~d~~~~~ 280 (732)
.....+|+++++.++......+ .... ..+++|||||+.|++...+.. ....+||++++.++.
T Consensus 147 --G~~~~~i~v~d~~tg~~~~~~~-~~~~----~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~ 219 (710)
T 2xdw_A 147 --GSDWVTIKFMKVDGAKELPDVL-ERVK----FSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQ 219 (710)
T ss_dssp --TCSCEEEEEEETTTTEEEEEEE-EEEC----SCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCG
T ss_pred --CCceEEEEEEECCCCCCCcccc-cCcc----cceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCc
Confidence 1223479999998875332222 1111 236899999999999886543 124579999997743
Q ss_pred CCcccccccCCCCCcEEeeeccc-c---eEEEEEecCCeEEEEeCCCCC-CceEEEEeCCC------CC-CceEeccCCC
Q 004766 281 EGLEGFKKRDGLLPFVKLIDGFD-A---QYEVIANDDTVFTFLTNKDAP-KYKIIRVDLKE------PN-DWFEVIPEAE 348 (732)
Q Consensus 281 ~~~~~~~~~~~~~~~~~l~~~~~-~---~~~~~s~dg~~l~~~s~~~~~-~~~l~~~d~~~------~~-~~~~l~~~~~ 348 (732)
.. ...+....+ . ....|||||+.|++.+.+... ...|+.+|+++ +. .++.|..+..
T Consensus 220 ~~------------~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~ 287 (710)
T 2xdw_A 220 SE------------DILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFE 287 (710)
T ss_dssp GG------------CEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSS
T ss_pred cc------------ceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCC
Confidence 10 112222111 1 123599999999998875432 56899999986 42 3677776552
Q ss_pred CCceeEEEEecCCEEEEEEecCC-eeEEEEEeCCCCc--eeeecccc-c-ceeeEeecccCCcEEEEEEecCCCCceEEE
Q 004766 349 RDVLESATAVNLNQMIVSYLSDV-KYVLQIRDLKNGS--LLHQLPIE-I-GSVNAISARREDSVVFISFTSFLIPGIVYQ 423 (732)
Q Consensus 349 ~~~l~~~~~~~~~~l~~~~~~~g-~~~l~~~d~~~g~--~~~~l~~~-~-g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~ 423 (732)
.....+. .+++.+++....++ ..+|+++++++++ ..+.|..+ . ..+..+.++ +++.+++++..- .-.+++.
T Consensus 288 -~~~~~~s-~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~lv~~~~~~-g~~~l~~ 363 (710)
T 2xdw_A 288 -GEYDYVT-NEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACV-RSNFLVLCYLHD-VKNTLQL 363 (710)
T ss_dssp -SCEEEEE-EETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEE-TTTEEEEEEEET-TEEEEEE
T ss_pred -cEEEEEe-ccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEE-cCCEEEEEEEEC-CEEEEEE
Confidence 3222222 23477888877654 5689999998664 12444433 2 256666666 355677766553 3457899
Q ss_pred EECCCCC
Q 004766 424 CNLKTET 430 (732)
Q Consensus 424 ~d~~~~~ 430 (732)
+++.+++
T Consensus 364 ~~~~~g~ 370 (710)
T 2xdw_A 364 HDLATGA 370 (710)
T ss_dssp EETTTCC
T ss_pred EECCCCC
Confidence 9986664
|
| >1azw_A Proline iminopeptidase; aminopeptidase, serine protease, xanthomonas campestris; 2.70A {Xanthomonas citri} SCOP: c.69.1.7 | Back alignment and structure |
|---|
Probab=99.52 E-value=2.4e-13 Score=140.80 Aligned_cols=123 Identities=14% Similarity=0.031 Sum_probs=84.8
Q ss_pred EEEEccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcc
Q 004766 454 VFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGG 533 (732)
Q Consensus 454 ~~~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~ 533 (732)
..++..+| .++.+...-+ ...|.||++||+++...... +..++..+||.|+++|.||.|.....
T Consensus 14 ~~~~~~~g-~~l~y~~~G~------~~g~pvvllHG~~~~~~~~~----~~~~~~~~~~~vi~~D~~G~G~S~~~----- 77 (313)
T 1azw_A 14 GSLKVDDR-HTLYFEQCGN------PHGKPVVMLHGGPGGGCNDK----MRRFHDPAKYRIVLFDQRGSGRSTPH----- 77 (313)
T ss_dssp EEEECSSS-CEEEEEEEEC------TTSEEEEEECSTTTTCCCGG----GGGGSCTTTEEEEEECCTTSTTSBST-----
T ss_pred ceEEcCCC-CEEEEEecCC------CCCCeEEEECCCCCccccHH----HHHhcCcCcceEEEECCCCCcCCCCC-----
Confidence 34566688 8887654432 12466899999876542221 12334347999999999998865321
Q ss_pred cccCCccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCc
Q 004766 534 ALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGV 595 (732)
Q Consensus 534 ~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~ 595 (732)
......+++++.+.+..+++. ...+++.++|+|+||++++.++.++|++++++|+..+.
T Consensus 78 -~~~~~~~~~~~~~dl~~l~~~--l~~~~~~lvGhSmGg~ia~~~a~~~p~~v~~lvl~~~~ 136 (313)
T 1azw_A 78 -ADLVDNTTWDLVADIERLRTH--LGVDRWQVFGGSWGSTLALAYAQTHPQQVTELVLRGIF 136 (313)
T ss_dssp -TCCTTCCHHHHHHHHHHHHHH--TTCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCC
T ss_pred -cccccccHHHHHHHHHHHHHH--hCCCceEEEEECHHHHHHHHHHHhChhheeEEEEeccc
Confidence 111234566776666666654 23358999999999999999999999999999987654
|
| >3nwo_A PIP, proline iminopeptidase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, mycobac smegmatis; 1.90A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.3e-13 Score=144.14 Aligned_cols=126 Identities=13% Similarity=0.051 Sum_probs=80.8
Q ss_pred cCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCC
Q 004766 459 KDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKK 538 (732)
Q Consensus 459 ~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~ 538 (732)
.+| .++.+...-+.+. +.+.+.||++||+++... .|...+..+..+.||.|+++|.||.|.....-. ....
T Consensus 35 ~~g-~~l~y~~~G~~~~--~~~g~plvllHG~~~~~~--~w~~~~~~l~~~~~~~Via~D~rG~G~S~~~~~----~~~~ 105 (330)
T 3nwo_A 35 FGD-HETWVQVTTPENA--QPHALPLIVLHGGPGMAH--NYVANIAALADETGRTVIHYDQVGCGNSTHLPD----APAD 105 (330)
T ss_dssp ETT-EEEEEEEECCSSC--CTTCCCEEEECCTTTCCS--GGGGGGGGHHHHHTCCEEEECCTTSTTSCCCTT----SCGG
T ss_pred ecC-cEEEEEEecCccC--CCCCCcEEEECCCCCCch--hHHHHHHHhccccCcEEEEECCCCCCCCCCCCC----Cccc
Confidence 378 8998877765321 111236888999887653 344444444433699999999999886532000 0001
Q ss_pred ccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCc
Q 004766 539 QNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGV 595 (732)
Q Consensus 539 ~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~ 595 (732)
..+++++.+.+..+++. ...+++.++|+|+||++++.++.++|+++.++|+..+.
T Consensus 106 ~~~~~~~a~dl~~ll~~--lg~~~~~lvGhSmGG~va~~~A~~~P~~v~~lvl~~~~ 160 (330)
T 3nwo_A 106 FWTPQLFVDEFHAVCTA--LGIERYHVLGQSWGGMLGAEIAVRQPSGLVSLAICNSP 160 (330)
T ss_dssp GCCHHHHHHHHHHHHHH--HTCCSEEEEEETHHHHHHHHHHHTCCTTEEEEEEESCC
T ss_pred cccHHHHHHHHHHHHHH--cCCCceEEEecCHHHHHHHHHHHhCCccceEEEEecCC
Confidence 12334444433333332 12358999999999999999999999999999876654
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.52 E-value=4.5e-12 Score=133.16 Aligned_cols=236 Identities=12% Similarity=0.026 Sum_probs=148.8
Q ss_pred EEEEeEEECCCCcEEEEEEecc----CCceEEEEEEECCCCceecccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCC
Q 004766 132 AALIKVSVSEDAKYLAYALSYS----GSDWATIKLMRIEDQIVEADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMD 207 (732)
Q Consensus 132 ~~~~~~~~SPDG~~la~~~~~~----G~e~~~i~v~dl~~g~~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~ 207 (732)
..++.+++ ||++|||+.... +....+||++|+++|+.... . ....++|||||+.|+|.+.+..
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l--~--~~~~~~~SpDg~~la~~~~~~~------- 81 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRFI--E--NATMPRISPDGKKIAFMRANEE------- 81 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEEE--E--SCEEEEECTTSSEEEEEEEETT-------
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEEc--c--cCCCeEECCCCCEEEEEEeccC-------
Confidence 34678888 999999997542 22357899999999875433 2 2478999999999999875431
Q ss_pred CCCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCC----------------------
Q 004766 208 AGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENC---------------------- 265 (732)
Q Consensus 208 ~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~---------------------- 265 (732)
....+||++++.++.. ..+...+ . ...+.|||||++|++.+.+..
T Consensus 82 -------~~~~~l~~~~~~~g~~--~~l~~~~---~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 148 (347)
T 2gop_A 82 -------KKVSEIWVADLETLSS--KKILEAK---N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFD 148 (347)
T ss_dssp -------TTEEEEEEEETTTTEE--EEEEEES---E-EEEEEECTTSSEEEEEEECCCC---------CCCC--------
T ss_pred -------CCcceEEEEECCCCce--EEEEcCC---C-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCccccc
Confidence 1234699999876543 2343332 2 568999999999999875310
Q ss_pred cceEEEEEEeCCCCCCCcccccccCCCCCcEEeeecccceEEEEEecCCeEEEEeCCCC-----C-CceEEEEeCCCCCC
Q 004766 266 DPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDA-----P-KYKIIRVDLKEPND 339 (732)
Q Consensus 266 ~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~-----~-~~~l~~~d~~~~~~ 339 (732)
.....||++++.++. ..+.+... ......|+||| ++|.++.+. . ..+|+.+| ++.
T Consensus 149 ~~~~~l~~~d~~~~~-------------~~~~l~~~-~~~~~~~spdg--~~~~~~~~~~~~~~~~~~~l~~~d--~~~- 209 (347)
T 2gop_A 149 GEKTTFWIFDTESEE-------------VIEEFEKP-RFSSGIWHRDK--IVVNVPHREIIPQYFKFWDIYIWE--DGK- 209 (347)
T ss_dssp -CEEEEEEEETTTTE-------------EEEEEEEE-TTCEEEEETTE--EEEEEECCCSSCCSSCCEEEEEEE--TTE-
T ss_pred CccceEEEEECCCCe-------------EEeeecCC-CcccccCCCCe--EEEEEecccccccccccccEEEeC--CCc-
Confidence 114679999998743 11333332 33344699998 666665432 1 56899999 444
Q ss_pred ceEeccCCCCCceeEEEEecC-CEEEEEEecC-----CeeEEEEEeCCCCceeeecccc-cceeeE-eecccCCcEEEEE
Q 004766 340 WFEVIPEAERDVLESATAVNL-NQMIVSYLSD-----VKYVLQIRDLKNGSLLHQLPIE-IGSVNA-ISARREDSVVFIS 411 (732)
Q Consensus 340 ~~~l~~~~~~~~l~~~~~~~~-~~l~~~~~~~-----g~~~l~~~d~~~g~~~~~l~~~-~g~v~~-~~~s~d~~~l~~~ 411 (732)
.+.+..+ ..+..+ +++ +.|++..... ...+|+++| +|+. +.+... .+.+.. +.++ |+ ++++
T Consensus 210 ~~~l~~~---~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~-~~l~~~~~~~~~~~~~~s-dg--~~~~ 278 (347)
T 2gop_A 210 EEKMFEK---VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEV-MGILDEVDRGVGQAKIKD-GK--VYFT 278 (347)
T ss_dssp EEEEEEE---ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCE-EESSTTCCSEEEEEEEET-TE--EEEE
T ss_pred eEEeccC---cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCce-EeccccCCcccCCccEEc-Cc--EEEE
Confidence 4556543 223333 554 4566665443 236899998 4665 455433 455654 6677 65 5555
Q ss_pred EecCCCCceEEEEE
Q 004766 412 FTSFLIPGIVYQCN 425 (732)
Q Consensus 412 ~ss~~~p~~~y~~d 425 (732)
.+.. .-..+| ++
T Consensus 279 ~~~~-~~~~l~-~~ 290 (347)
T 2gop_A 279 LFEE-GSVNLY-IW 290 (347)
T ss_dssp EEET-TEEEEE-EE
T ss_pred EecC-CcEEEE-Ec
Confidence 4432 245677 77
|
| >3gff_A IROE-like serine hydrolase; NP_718593.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; 2.12A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.52 E-value=7e-14 Score=144.89 Aligned_cols=224 Identities=13% Similarity=0.041 Sum_probs=145.0
Q ss_pred eEEEEEEEcc-CCCeeEEEEEEEcCCCCC-CCCccEEEEEcCCCCccCCCCcChhHHHHHHh------cCcEEEEEcccC
Q 004766 450 HVHQVFVPSK-DGSTKIPMFIVSKKNIKL-DGSHPCLLYGYGGFNISVTPSFSVSRTILMRH------LGAVFCIANIRG 521 (732)
Q Consensus 450 ~~~~~~~~s~-dG~~~i~~~~~~p~~~~~-~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~------~G~~v~~~~~rG 521 (732)
.++.+.+.|. -| .+..++++.|+++.. .+++|+|++.||..... . ...+...+.. .+++||.++..
T Consensus 11 ~v~~~~~~S~~l~-~~r~~~VylP~~y~~~~~~yPVlylldG~~~f~---~-~~~~~~~l~~~~~~~~~~~IvV~i~~~- 84 (331)
T 3gff_A 11 EYQSKRLESRLLK-ETREYVIALPEGYAQSLEAYPVVYLLDGEDQFD---H-MASLLQFLSQGTMPQIPKVIIVGIHNT- 84 (331)
T ss_dssp CEEEEEEEETTTT-EEEEEEEECCTTGGGSCCCEEEEEESSHHHHHH---H-HHHHHHHHTCSSSCSSCCCEEEEECCS-
T ss_pred eEEEEEEEecCCC-CeEEEEEEeCCCCCCCCCCccEEEEecChhhhH---H-HHHHHHHHHhhhhcCCCCEEEEEECCC-
Confidence 4566667665 57 899999999999765 67899999999952110 0 1123344442 36888887751
Q ss_pred CCCCchhHHhc-------c-------cccCCccHHHHHH--HHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCe
Q 004766 522 GGEYGEEWHKG-------G-------ALAKKQNCFDDFI--SASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDL 585 (732)
Q Consensus 522 ~g~~g~~~~~~-------~-------~~~~~~~~~~D~~--~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~ 585 (732)
....++... | ....+...+.+++ .++.++.++-.+++.| +|+|+|+||++++.++.++|++
T Consensus 85 --~R~~dytp~~~~~~~~G~~~~~~~~~~g~~~~~~~~l~~el~p~i~~~~~~~~~r-~i~G~S~GG~~al~~~~~~p~~ 161 (331)
T 3gff_A 85 --NRMRDYTPTHTLVLPSGNKGNPQYQHTGGAGRFLDFIEKELAPSIESQLRTNGIN-VLVGHSFGGLVAMEALRTDRPL 161 (331)
T ss_dssp --SHHHHSCSSCCSBCTTSSBCCGGGGGCCCHHHHHHHHHHTHHHHHHHHSCEEEEE-EEEEETHHHHHHHHHHHTTCSS
T ss_pred --CcccccCCCccccccccccccccCCCCCcHHHHHHHHHHHHHHHHHHHCCCCCCe-EEEEECHHHHHHHHHHHhCchh
Confidence 111111100 0 0022334566666 4566666665567655 8999999999999999999999
Q ss_pred eeEEEEcCCcccccccccCCCCCccccccCCCCCHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCC----
Q 004766 586 FGCALAHVGVMDMLRYHKFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDD---- 661 (732)
Q Consensus 586 f~a~v~~~p~~d~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~---- 661 (732)
|+++++.+|.+.+ .++ ...+.+... +..... ...|+++.||..|.
T Consensus 162 F~~~~~~S~~~w~----------------~~~---~~~~~~~~~--~~~~~~----------~~~~l~l~~G~~d~~~~~ 210 (331)
T 3gff_A 162 FSAYLALDTSLWF----------------DSP---HYLTLLEER--VVKGDF----------KQKQLFMAIANNPLSPGF 210 (331)
T ss_dssp CSEEEEESCCTTT----------------TTT---HHHHHHHHH--HHHCCC----------SSEEEEEEECCCSEETTT
T ss_pred hheeeEeCchhcC----------------ChH---HHHHHHHHH--hhcccC----------CCCeEEEEeCCCCCCCcc
Confidence 9999999996421 111 111111111 111111 34699999999998
Q ss_pred ---CCCchHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeCCCCCCCCCchHHHHHHHHHHHHHHHHH
Q 004766 662 ---RVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKM 725 (732)
Q Consensus 662 ---~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~ 725 (732)
+++..++.+++++|+.. ...|.++.+.++|+++|+... .......+.||...
T Consensus 211 ~~~~~~~~~~~~l~~~Lk~~-------~~~g~~~~~~~~pg~~H~sv~-----~~~~~~~l~~lf~~ 265 (331)
T 3gff_A 211 GVSSYHKDLNLAFADKLTKL-------APKGLGFMAKYYPEETHQSVS-----HIGLYDGIRHLFKD 265 (331)
T ss_dssp EECCHHHHHHHHHHHHHHHH-------CCTTEEEEEEECTTCCTTTHH-----HHHHHHHHHHHHGG
T ss_pred chHHHHHHHHHHHHHHHHhc-------cCCCceEEEEECCCCCccccH-----HHHHHHHHHHHHhh
Confidence 78888899999999986 233678999999999998643 22334455565543
|
| >1c4x_A BPHD, protein (2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoat hydrolase); PCB degradation; 2.40A {Rhodococcus SP} SCOP: c.69.1.10 | Back alignment and structure |
|---|
Probab=99.52 E-value=9.7e-14 Score=141.76 Aligned_cols=233 Identities=12% Similarity=0.012 Sum_probs=130.1
Q ss_pred ccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCC-CccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhccccc
Q 004766 458 SKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGF-NISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALA 536 (732)
Q Consensus 458 s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~-~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~ 536 (732)
..+| .++.+...-+ ...|+||++||.. +......|... ...|. ++|.|+++|+||.|..... .
T Consensus 13 ~~~g-~~l~y~~~g~------~g~p~vvllHG~~~~~~~~~~~~~~-~~~L~-~~~~vi~~D~~G~G~S~~~-------~ 76 (285)
T 1c4x_A 13 PSGT-LASHALVAGD------PQSPAVVLLHGAGPGAHAASNWRPI-IPDLA-ENFFVVAPDLIGFGQSEYP-------E 76 (285)
T ss_dssp CCTT-SCEEEEEESC------TTSCEEEEECCCSTTCCHHHHHGGG-HHHHH-TTSEEEEECCTTSTTSCCC-------S
T ss_pred EECC-EEEEEEecCC------CCCCEEEEEeCCCCCCcchhhHHHH-HHHHh-hCcEEEEecCCCCCCCCCC-------C
Confidence 4478 7887654311 1246799999974 22222234433 35566 5699999999998864321 1
Q ss_pred CCccHHHHH----HHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCccccccc--------ccC
Q 004766 537 KKQNCFDDF----ISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRY--------HKF 604 (732)
Q Consensus 537 ~~~~~~~D~----~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~--------~~~ 604 (732)
....+++++ .+.+..+++. ...+++.++|+|+||.+++.++.++|++++++|+..|....... ...
T Consensus 77 ~~~~~~~~~~~~~~~dl~~~l~~--l~~~~~~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~ 154 (285)
T 1c4x_A 77 TYPGHIMSWVGMRVEQILGLMNH--FGIEKSHIVGNSMGGAVTLQLVVEAPERFDKVALMGSVGAPMNARPPELARLLAF 154 (285)
T ss_dssp SCCSSHHHHHHHHHHHHHHHHHH--HTCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSSCCSSCCHHHHHHHTG
T ss_pred CcccchhhhhhhHHHHHHHHHHH--hCCCccEEEEEChHHHHHHHHHHhChHHhheEEEeccCCCCCCccchhHHHHHHH
Confidence 112345555 5444444433 12368999999999999999999999999999988775421100 000
Q ss_pred CCCCc------cccc-cCCCC----CHHH-------------HHHHHh-cCcccC-CCCCCCCCCCCCCCCCeEEEEeeC
Q 004766 605 TIGHA------WVSD-FGCSE----EEEE-------------FYWLIK-YSPLHN-VRRPWEQNPDKPFQYPSTLLLTAD 658 (732)
Q Consensus 605 ~~~~~------~~~~-~g~p~----~~~~-------------~~~~~~-~sp~~~-~~~~~~~~~~~~~~~~p~Li~~g~ 658 (732)
..... +... +.++. .++. ...+.. +.|... ....+........+..|+|+++|.
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~ 234 (285)
T 1c4x_A 155 YADPRLTPYRELIHSFVYDPENFPGMEEIVKSRFEVANDPEVRRIQEVMFESMKAGMESLVIPPATLGRLPHDVLVFHGR 234 (285)
T ss_dssp GGSCCHHHHHHHHHTTSSCSTTCTTHHHHHHHHHHHHHCHHHHHHHHHHHHHHSSCCGGGCCCHHHHTTCCSCEEEEEET
T ss_pred hccccHHHHHHHHHHhhcCcccccCcHHHHHHHHHhccCHHHHHHHHHHhccccccccccccchhhhccCCCCEEEEEeC
Confidence 00000 0000 01111 1111 111100 000000 000000000001378899999999
Q ss_pred CCCCCCchHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeCCCCCCCCCchHHHHHHHHHHHHHHHH
Q 004766 659 HDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAK 724 (732)
Q Consensus 659 ~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~ 724 (732)
+|..||+..+.++++.+. ..++++++++||....... .+..+.+.+||.+
T Consensus 235 ~D~~~p~~~~~~~~~~~~--------------~~~~~~i~~~gH~~~~e~p--~~~~~~i~~fl~~ 284 (285)
T 1c4x_A 235 QDRIVPLDTSLYLTKHLK--------------HAELVVLDRCGHWAQLERW--DAMGPMLMEHFRA 284 (285)
T ss_dssp TCSSSCTHHHHHHHHHCS--------------SEEEEEESSCCSCHHHHSH--HHHHHHHHHHHHC
T ss_pred CCeeeCHHHHHHHHHhCC--------------CceEEEeCCCCcchhhcCH--HHHHHHHHHHHhc
Confidence 999999998887766543 3588999999998643222 2445567778753
|
| >2vat_A Acetyl-COA--deacetylcephalosporin C acetyltransferase; A/B- hydrolase fold, acyltransferase, acetyl coenzyme A, antibiotic biosynthesis; HET: COA; 2.2A {Acremonium chrysogenum} SCOP: c.69.1.40 PDB: 2vav_A* 2vax_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=3.6e-14 Score=155.01 Aligned_cols=116 Identities=11% Similarity=0.049 Sum_probs=77.4
Q ss_pred CccEEEEEcCCCCccCCCC-cChhHH--HHHHhcCcEEEEEcccCC--CCCchhHHhc--cc-----ccCCccHHHHHHH
Q 004766 480 SHPCLLYGYGGFNISVTPS-FSVSRT--ILMRHLGAVFCIANIRGG--GEYGEEWHKG--GA-----LAKKQNCFDDFIS 547 (732)
Q Consensus 480 ~~P~vv~~hG~~~~~~~~~-~~~~~~--~~l~~~G~~v~~~~~rG~--g~~g~~~~~~--~~-----~~~~~~~~~D~~~ 547 (732)
..|+||++||..+...... |..... ..|..+||.|+++|.||+ |..+..-... +. ......+++|+.+
T Consensus 108 ~~p~vvllHG~~~~~~~~~~w~~~~~~~~~L~~~~~~Vi~~D~~G~~~G~S~~~~~~~~~~~~~~~~~~f~~~t~~~~a~ 187 (444)
T 2vat_A 108 RDNCVIVCHTLTSSAHVTSWWPTLFGQGRAFDTSRYFIICLNYLGSPFGSAGPCSPDPDAEGQRPYGAKFPRTTIRDDVR 187 (444)
T ss_dssp SCCEEEEECCTTCCSCGGGTCGGGBSTTSSBCTTTCEEEEECCTTCSSSSSSTTSBCTTTC--CBCGGGCCCCCHHHHHH
T ss_pred CCCeEEEECCCCcccchhhHHHHhcCccchhhccCCEEEEecCCCCCCCCCCCCCCCcccccccccccccccccHHHHHH
Confidence 3589999999987754311 332221 124348999999999994 4332110000 00 0011246777777
Q ss_pred HHHHHHHcCCCCCCc-EEEEecChhHHHHHHHHhhCCCeeeEEEEcCCccc
Q 004766 548 ASEYLISAGYTQSRK-LCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMD 597 (732)
Q Consensus 548 ~~~~l~~~~~~d~~~-i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d 597 (732)
.+..+++. ...++ +.++|||+||++++.++.++|++++++|+..|...
T Consensus 188 dl~~ll~~--l~~~~~~~lvGhSmGG~ial~~A~~~p~~v~~lVli~~~~~ 236 (444)
T 2vat_A 188 IHRQVLDR--LGVRQIAAVVGASMGGMHTLEWAFFGPEYVRKIVPIATSCR 236 (444)
T ss_dssp HHHHHHHH--HTCCCEEEEEEETHHHHHHHHHGGGCTTTBCCEEEESCCSB
T ss_pred HHHHHHHh--cCCccceEEEEECHHHHHHHHHHHhChHhhheEEEEecccc
Confidence 77766654 23457 99999999999999999999999999998887653
|
| >1u2e_A 2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase; alpha/beta hydrolase fold; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.51 E-value=2.2e-13 Score=139.37 Aligned_cols=212 Identities=15% Similarity=0.045 Sum_probs=124.6
Q ss_pred cEEEEEcCCC-CccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCccHHHHHHHHHHHHHHcCCCCC
Q 004766 482 PCLLYGYGGF-NISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQS 560 (732)
Q Consensus 482 P~vv~~hG~~-~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~ 560 (732)
|+||++||.. +......|.......|. ++|.|+++|+||.|..... .....+++++.+.+..+++. .+.
T Consensus 37 ~~vvllHG~~~~~~~~~~~~~~~~~~l~-~~~~vi~~D~~G~G~S~~~-------~~~~~~~~~~~~~l~~~l~~--l~~ 106 (289)
T 1u2e_A 37 ETVVLLHGSGPGATGWANFSRNIDPLVE-AGYRVILLDCPGWGKSDSV-------VNSGSRSDLNARILKSVVDQ--LDI 106 (289)
T ss_dssp SEEEEECCCSTTCCHHHHTTTTHHHHHH-TTCEEEEECCTTSTTSCCC-------CCSSCHHHHHHHHHHHHHHH--TTC
T ss_pred ceEEEECCCCcccchhHHHHHhhhHHHh-cCCeEEEEcCCCCCCCCCC-------CccccCHHHHHHHHHHHHHH--hCC
Confidence 3899999964 22212234433325577 5699999999998864321 11135677777777766654 234
Q ss_pred CcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCccccccccc------------C--CCCC----ccccc-cCCC--CC
Q 004766 561 RKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHK------------F--TIGH----AWVSD-FGCS--EE 619 (732)
Q Consensus 561 ~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~------------~--~~~~----~~~~~-~g~p--~~ 619 (732)
+++.++|+|+||.+++.++.++|++++++|+..|......... . .... .+... +.++ ..
T Consensus 107 ~~~~lvGhS~GG~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (289)
T 1u2e_A 107 AKIHLLGNSMGGHSSVAFTLKWPERVGKLVLMGGGTGGMSLFTPMPTEGIKRLNQLYRQPTIENLKLMMDIFVFDTSDLT 186 (289)
T ss_dssp CCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCSCCCCCSSSCSSCHHHHHHHHHHHSCCHHHHHHHHHTTSSCTTSCC
T ss_pred CceEEEEECHhHHHHHHHHHHCHHhhhEEEEECCCccccccccccchhhHHHHHHHHhcchHHHHHHHHHHhhcCcccCC
Confidence 6899999999999999999999999999998776542110000 0 0000 00000 0111 01
Q ss_pred HHH--------------HHHHH-hc--CcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhcCC
Q 004766 620 EEE--------------FYWLI-KY--SPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTS 682 (732)
Q Consensus 620 ~~~--------------~~~~~-~~--sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~ 682 (732)
++. +..+. .+ .+..... ..+....+..|+|+++|.+|..||+..+.++++.+..
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~i~~P~lii~G~~D~~~~~~~~~~~~~~~~~----- 257 (289)
T 1u2e_A 187 DALFEARLNNMLSRRDHLENFVKSLEANPKQFPD----FGPRLAEIKAQTLIVWGRNDRFVPMDAGLRLLSGIAG----- 257 (289)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHHCSCCSCC----CGGGGGGCCSCEEEEEETTCSSSCTHHHHHHHHHSTT-----
T ss_pred HHHHHHHHHHhhcChhHHHHHHHHHHhccccccc----hhhHHhhcCCCeEEEeeCCCCccCHHHHHHHHhhCCC-----
Confidence 111 11000 00 0100000 0001113789999999999999999998887766542
Q ss_pred CCCCCCCCCEEEEEeCCCCCCCCCchHHHHHHHHHHHHHHH
Q 004766 683 LENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMA 723 (732)
Q Consensus 683 ~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~ 723 (732)
.++++++++||....... .+..+.+.+||.
T Consensus 258 ---------~~~~~i~~~gH~~~~e~p--~~~~~~i~~fl~ 287 (289)
T 1u2e_A 258 ---------SELHIFRDCGHWAQWEHA--DAFNQLVLNFLA 287 (289)
T ss_dssp ---------CEEEEESSCCSCHHHHTH--HHHHHHHHHHHT
T ss_pred ---------cEEEEeCCCCCchhhcCH--HHHHHHHHHHhc
Confidence 478889999998543222 234455667764
|
| >3r40_A Fluoroacetate dehalogenase; FACD, defluorinase, alpha/beta hydrolase, hydrolase; 1.05A {Rhodopseudomonas palustris} PDB: 3r3w_A 3r3x_A 3r3v_A 3r3u_A 3r3z_A 3r41_A 3r3y_A | Back alignment and structure |
|---|
Probab=99.51 E-value=9.7e-14 Score=142.56 Aligned_cols=120 Identities=11% Similarity=-0.021 Sum_probs=86.8
Q ss_pred ccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccC
Q 004766 458 SKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAK 537 (732)
Q Consensus 458 s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~ 537 (732)
..+| .++.+... +..|+||++||..+... .|.. +...|. .||.|+++|.||.|.....-.. ...
T Consensus 19 ~~~g-~~l~~~~~--------g~~~~vv~lHG~~~~~~--~~~~-~~~~l~-~~~~v~~~D~~G~G~S~~~~~~---~~~ 82 (306)
T 3r40_A 19 NTSS-GRIFARVG--------GDGPPLLLLHGFPQTHV--MWHR-VAPKLA-ERFKVIVADLPGYGWSDMPESD---EQH 82 (306)
T ss_dssp CCTT-CCEEEEEE--------ECSSEEEEECCTTCCGG--GGGG-THHHHH-TTSEEEEECCTTSTTSCCCCCC---TTC
T ss_pred EeCC-EEEEEEEc--------CCCCeEEEECCCCCCHH--HHHH-HHHHhc-cCCeEEEeCCCCCCCCCCCCCC---ccc
Confidence 4478 88877653 24579999999987643 3443 356677 5999999999998864321100 000
Q ss_pred CccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCc
Q 004766 538 KQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGV 595 (732)
Q Consensus 538 ~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~ 595 (732)
...+++++.+.+..+++. ...+++.++|+|+||.++..++.++|++++++|+..|.
T Consensus 83 ~~~~~~~~~~~~~~~l~~--l~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~ 138 (306)
T 3r40_A 83 TPYTKRAMAKQLIEAMEQ--LGHVHFALAGHNRGARVSYRLALDSPGRLSKLAVLDIL 138 (306)
T ss_dssp GGGSHHHHHHHHHHHHHH--TTCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCC
T ss_pred CCCCHHHHHHHHHHHHHH--hCCCCEEEEEecchHHHHHHHHHhChhhccEEEEecCC
Confidence 134567777776666655 34468999999999999999999999999999998864
|
| >2qvb_A Haloalkane dehalogenase 3; RV2579, alpha-beta hydrolase protei structural genomics consortium, TBSGC, hydrolase; 1.19A {Mycobacterium tuberculosis} PDB: 2o2i_A 2o2h_A | Back alignment and structure |
|---|
Probab=99.50 E-value=5.9e-14 Score=143.58 Aligned_cols=121 Identities=11% Similarity=0.013 Sum_probs=85.0
Q ss_pred ccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccC
Q 004766 458 SKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAK 537 (732)
Q Consensus 458 s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~ 537 (732)
..+| .++.+... ++.|+||++||..+.... |... ...|+ .+|.|+++|+||.|.....- ....
T Consensus 14 ~~~g-~~l~~~~~--------g~~~~vv~lHG~~~~~~~--~~~~-~~~l~-~~~~vi~~D~~G~G~S~~~~----~~~~ 76 (297)
T 2qvb_A 14 EIAG-KRMAYIDE--------GKGDAIVFQHGNPTSSYL--WRNI-MPHLE-GLGRLVACDLIGMGASDKLS----PSGP 76 (297)
T ss_dssp EETT-EEEEEEEE--------SSSSEEEEECCTTCCGGG--GTTT-GGGGT-TSSEEEEECCTTSTTSCCCS----SCST
T ss_pred EECC-EEEEEEec--------CCCCeEEEECCCCchHHH--HHHH-HHHHh-hcCeEEEEcCCCCCCCCCCC----Cccc
Confidence 3478 88876544 235899999998876532 4332 34466 56999999999988643210 0001
Q ss_pred CccHHHHHHHHHHHHHHcCCCCC-CcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCccc
Q 004766 538 KQNCFDDFISASEYLISAGYTQS-RKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMD 597 (732)
Q Consensus 538 ~~~~~~D~~~~~~~l~~~~~~d~-~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d 597 (732)
...+++++.+.+..+++. .+. +++.++|+|+||.+++.++.++|++++++|+..|...
T Consensus 77 ~~~~~~~~~~~~~~~l~~--~~~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~ 135 (297)
T 2qvb_A 77 DRYSYGEQRDFLFALWDA--LDLGDHVVLVLHDWGSALGFDWANQHRDRVQGIAFMEAIVT 135 (297)
T ss_dssp TSSCHHHHHHHHHHHHHH--TTCCSCEEEEEEEHHHHHHHHHHHHSGGGEEEEEEEEECCS
T ss_pred cCcCHHHHHHHHHHHHHH--cCCCCceEEEEeCchHHHHHHHHHhChHhhheeeEeccccC
Confidence 114566666666665554 234 6899999999999999999999999999998887653
|
| >3p2m_A Possible hydrolase; alpha/beta hydrolase superfamily; 2.80A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.50 E-value=7.5e-14 Score=145.95 Aligned_cols=212 Identities=13% Similarity=0.043 Sum_probs=124.7
Q ss_pred ccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCccHHHHHHHHHHHHHHcCCCCC
Q 004766 481 HPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQS 560 (732)
Q Consensus 481 ~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~ 560 (732)
.|+||++||..+... .| ..++...||.|+++|.||.|.... ......+++++.+.+..+++. .+.
T Consensus 81 ~~~vv~~hG~~~~~~--~~----~~~~~~lg~~Vi~~D~~G~G~S~~-------~~~~~~~~~~~a~dl~~~l~~--l~~ 145 (330)
T 3p2m_A 81 APRVIFLHGGGQNAH--TW----DTVIVGLGEPALAVDLPGHGHSAW-------REDGNYSPQLNSETLAPVLRE--LAP 145 (330)
T ss_dssp CCSEEEECCTTCCGG--GG----HHHHHHSCCCEEEECCTTSTTSCC-------CSSCBCCHHHHHHHHHHHHHH--SST
T ss_pred CCeEEEECCCCCccc--hH----HHHHHHcCCeEEEEcCCCCCCCCC-------CCCCCCCHHHHHHHHHHHHHH--hCC
Confidence 578999999876532 23 334444699999999999875421 112344566777666666654 345
Q ss_pred CcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCccccccccc-----------CC-CCCccc--c----cc--CCC-CC
Q 004766 561 RKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHK-----------FT-IGHAWV--S----DF--GCS-EE 619 (732)
Q Consensus 561 ~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~-----------~~-~~~~~~--~----~~--g~p-~~ 619 (732)
+++.++|+|+||++++.++.++|++++++|+..|......... .. ....+. . .+ ..+ ..
T Consensus 146 ~~v~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (330)
T 3p2m_A 146 GAEFVVGMSLGGLTAIRLAAMAPDLVGELVLVDVTPSALQRHAELTAEQRGTVALMHGEREFPSFQAMLDLTIAAAPHRD 225 (330)
T ss_dssp TCCEEEEETHHHHHHHHHHHHCTTTCSEEEEESCCHHHHHHHHHHTCC-----------CCBSCHHHHHHHHHHHCTTSC
T ss_pred CCcEEEEECHhHHHHHHHHHhChhhcceEEEEcCCCccchhhhhhhhhhhhhhhhhcCCccccCHHHHHHHHHhcCCCCC
Confidence 7899999999999999999999999999999887544211100 00 000000 0 00 001 11
Q ss_pred HHHHHHHHhcCcccC--------CCCCCCCC------CCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhcCCCCC
Q 004766 620 EEEFYWLIKYSPLHN--------VRRPWEQN------PDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLEN 685 (732)
Q Consensus 620 ~~~~~~~~~~sp~~~--------~~~~~~~~------~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~ 685 (732)
...+........... ........ +....+..|+|+++|.+|..||+..+.++.+.+..
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLii~G~~D~~v~~~~~~~l~~~~~~-------- 297 (330)
T 3p2m_A 226 VKSLRRGVFHNSRRLDNGNWVWRYDAIRTFGDFAGLWDDVDALSAPITLVRGGSSGFVTDQDTAELHRRATH-------- 297 (330)
T ss_dssp HHHHHHHHHTTEEECSSSCEEESSCCCSBCCCHHHHHHHHHHCCSCEEEEEETTCCSSCHHHHHHHHHHCSS--------
T ss_pred HHHHHHHHHhcccccCCCceEEeechhhCccccHHHHHHHhhCCCCEEEEEeCCCCCCCHHHHHHHHHhCCC--------
Confidence 111111110000000 00000000 00012678999999999999999888777765532
Q ss_pred CCCCCCEE-EEEeCCCCCCCCCchHHHHHHHHHHHHHHH
Q 004766 686 SPQTNPII-GRIERKAGHGVGLPTQKMIDEAADRYGFMA 723 (732)
Q Consensus 686 ~~~~~~~~-~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~ 723 (732)
.. +++++++||....... .+....+.+||.
T Consensus 298 ------~~~~~~i~~~gH~~~~e~p--~~~~~~i~~fl~ 328 (330)
T 3p2m_A 298 ------FRGVHIVEKSGHSVQSDQP--RALIEIVRGVLD 328 (330)
T ss_dssp ------EEEEEEETTCCSCHHHHCH--HHHHHHHHHHTT
T ss_pred ------CeeEEEeCCCCCCcchhCH--HHHHHHHHHHHh
Confidence 46 8999999998643222 244455667764
|
| >2e3j_A Epoxide hydrolase EPHB; epoxide hydrolase B, structural mycobacterium tuberculosis structural proteomics project, X hydrolase; 2.10A {Mycobacterium tuberculosis} PDB: 2zjf_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=2.5e-13 Score=143.60 Aligned_cols=123 Identities=13% Similarity=0.072 Sum_probs=85.9
Q ss_pred ccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccC
Q 004766 458 SKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAK 537 (732)
Q Consensus 458 s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~ 537 (732)
..+| .++.+...-|++ +..|+||++||..+... .|... ...|.++||.|+++|+||.|..... ...
T Consensus 9 ~~~g-~~l~y~~~G~~~----~~~~~vv~~hG~~~~~~--~~~~~-~~~l~~~g~~vi~~d~~g~g~s~~~------~~~ 74 (356)
T 2e3j_A 9 NCRG-TRIHAVADSPPD----QQGPLVVLLHGFPESWY--SWRHQ-IPALAGAGYRVVAIDQRGYGRSSKY------RVQ 74 (356)
T ss_dssp EETT-EEEEEEEECCTT----CCSCEEEEECCTTCCGG--GGTTT-HHHHHHTTCEEEEECCTTSTTSCCC------CSG
T ss_pred ccCC-eEEEEEEecCCC----CCCCEEEEECCCCCcHH--HHHHH-HHHHHHcCCEEEEEcCCCCCCCCCC------Ccc
Confidence 3478 899888765542 35689999999877643 34433 3445548999999999998754221 000
Q ss_pred CccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCcc
Q 004766 538 KQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVM 596 (732)
Q Consensus 538 ~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~ 596 (732)
...+++++.+.+..+++. .+.+++.++|+|+||.+++.++.++|++++++|+..+..
T Consensus 75 ~~~~~~~~~~~~~~~~~~--l~~~~~~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~ 131 (356)
T 2e3j_A 75 KAYRIKELVGDVVGVLDS--YGAEQAFVVGHDWGAPVAWTFAWLHPDRCAGVVGISVPF 131 (356)
T ss_dssp GGGSHHHHHHHHHHHHHH--TTCSCEEEEEETTHHHHHHHHHHHCGGGEEEEEEESSCC
T ss_pred cccCHHHHHHHHHHHHHH--cCCCCeEEEEECHhHHHHHHHHHhCcHhhcEEEEECCcc
Confidence 122455555555544443 345689999999999999999999999999998876543
|
| >2q0x_A Protein DUF1749, uncharacterized protein; alpha/beta hydrolase fold, structural genomics, structural G of pathogenic protozoa consortium; 2.20A {Trypanosoma brucei} | Back alignment and structure |
|---|
Probab=99.49 E-value=3.1e-13 Score=141.37 Aligned_cols=116 Identities=13% Similarity=0.086 Sum_probs=81.5
Q ss_pred eEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEc----ccCCCCCchhHHhcccccCCc
Q 004766 464 KIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIAN----IRGGGEYGEEWHKGGALAKKQ 539 (732)
Q Consensus 464 ~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~----~rG~g~~g~~~~~~~~~~~~~ 539 (732)
.+.+..+.|. .+..|+||++||..+......+...+...|+ +||.|+.+| +||.|.... .
T Consensus 25 ~~~y~~~g~~----~~~~~~vvllHG~~~~~~~~~~~~~l~~~L~-~g~~Vi~~Dl~~D~~G~G~S~~-----------~ 88 (335)
T 2q0x_A 25 YCKIPVFMMN----MDARRCVLWVGGQTESLLSFDYFTNLAEELQ-GDWAFVQVEVPSGKIGSGPQDH-----------A 88 (335)
T ss_dssp TEEEEEEEEC----TTSSSEEEEECCTTCCTTCSTTHHHHHHHHT-TTCEEEEECCGGGBTTSCSCCH-----------H
T ss_pred ceeEEEeccC----CCCCcEEEEECCCCccccchhHHHHHHHHHH-CCcEEEEEeccCCCCCCCCccc-----------c
Confidence 5555544431 1345889999997654333333233445565 899999995 578765421 1
Q ss_pred cHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHh--hCCCeeeEEEEcCCccc
Q 004766 540 NCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACIN--QRPDLFGCALAHVGVMD 597 (732)
Q Consensus 540 ~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~--~~p~~f~a~v~~~p~~d 597 (732)
...+|+.+++++|.+. .+.+++.++|+||||++++.++. .+|++++++|+..|+.+
T Consensus 89 ~~~~d~~~~~~~l~~~--l~~~~~~LvGhSmGG~iAl~~A~~~~~p~rV~~lVL~~~~~~ 146 (335)
T 2q0x_A 89 HDAEDVDDLIGILLRD--HCMNEVALFATSTGTQLVFELLENSAHKSSITRVILHGVVCD 146 (335)
T ss_dssp HHHHHHHHHHHHHHHH--SCCCCEEEEEEGGGHHHHHHHHHHCTTGGGEEEEEEEEECCC
T ss_pred CcHHHHHHHHHHHHHH--cCCCcEEEEEECHhHHHHHHHHHhccchhceeEEEEECCccc
Confidence 2457888888888774 34579999999999999999988 47999999998877643
|
| >2cjp_A Epoxide hydrolase; HET: PG4 VPR; 1.95A {Solanum tuberosum} PDB: 3cxu_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=3.2e-13 Score=140.95 Aligned_cols=120 Identities=15% Similarity=0.146 Sum_probs=80.4
Q ss_pred ccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccC
Q 004766 458 SKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAK 537 (732)
Q Consensus 458 s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~ 537 (732)
..+| .++.+... +..|.||++||.++... .|... ...|.++||.|+++|.||.|.....-. ...
T Consensus 17 ~~~g-~~l~y~~~--------G~g~~vvllHG~~~~~~--~w~~~-~~~L~~~g~~via~Dl~G~G~S~~~~~----~~~ 80 (328)
T 2cjp_A 17 AVNG-LNMHLAEL--------GEGPTILFIHGFPELWY--SWRHQ-MVYLAERGYRAVAPDLRGYGDTTGAPL----NDP 80 (328)
T ss_dssp EETT-EEEEEEEE--------CSSSEEEEECCTTCCGG--GGHHH-HHHHHTTTCEEEEECCTTSTTCBCCCT----TCG
T ss_pred cCCC-cEEEEEEc--------CCCCEEEEECCCCCchH--HHHHH-HHHHHHCCcEEEEECCCCCCCCCCcCc----CCc
Confidence 3478 88776543 23479999999877542 44433 345655899999999999886532100 001
Q ss_pred CccHHHHHHHHHHHHHHc-CCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCC
Q 004766 538 KQNCFDDFISASEYLISA-GYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVG 594 (732)
Q Consensus 538 ~~~~~~D~~~~~~~l~~~-~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p 594 (732)
...+++++.+.+..+++. +. +.+++.++|+|+||+++..++.++|++++++|+..+
T Consensus 81 ~~~~~~~~a~dl~~~l~~l~~-~~~~~~lvGhS~Gg~ia~~~A~~~p~~v~~lvl~~~ 137 (328)
T 2cjp_A 81 SKFSILHLVGDVVALLEAIAP-NEEKVFVVAHDWGALIAWHLCLFRPDKVKALVNLSV 137 (328)
T ss_dssp GGGSHHHHHHHHHHHHHHHCT-TCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESC
T ss_pred ccccHHHHHHHHHHHHHHhcC-CCCCeEEEEECHHHHHHHHHHHhChhheeEEEEEcc
Confidence 122344444444443332 21 246899999999999999999999999999988653
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.48 E-value=3e-12 Score=148.06 Aligned_cols=254 Identities=11% Similarity=-0.019 Sum_probs=162.2
Q ss_pred EECCCCcEEEEEEeccCCceEEEEEEECCCCce--ecccc-----cceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCC
Q 004766 138 SVSEDAKYLAYALSYSGSDWATIKLMRIEDQIV--EADAL-----SWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGT 210 (732)
Q Consensus 138 ~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~--~~~~~-----~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~ 210 (732)
.++|||++++|+...+|.+...||+++..+|+. +.+.. ......+++|||||+.|+|+....
T Consensus 74 ~p~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~----------- 142 (695)
T 2bkl_A 74 TPSRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPN----------- 142 (695)
T ss_dssp CCEEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEET-----------
T ss_pred CCEEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCC-----------
Confidence 356999999999988887778899999877763 22111 111357899999999999997653
Q ss_pred cccCCcccEEEEEECCCCCCC-CeEEEecCCCCeeEEEeEEecCCcEEEEEEecCC--------cceEEEEEEeCCCCCC
Q 004766 211 ETDSNLYHEFYYHFLGTKQSE-DILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENC--------DPVNKVYYCDLSALPE 281 (732)
Q Consensus 211 ~~~~~~~~~v~~~~lgt~~~~-~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~--------~~~~~l~~~d~~~~~~ 281 (732)
......|+++++.++... .. . .+. ..+ .+++|||||+.|++.+.+.. ....+||++++.++..
T Consensus 143 ---G~~~~~i~v~dl~tg~~~~~~-~--~~~-~~~-~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~ 214 (695)
T 2bkl_A 143 ---AADEAVLHVIDVDSGEWSKVD-V--IEG-GKY-ATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPS 214 (695)
T ss_dssp ---TCSCCEEEEEETTTCCBCSSC-C--BSC-CTT-CCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGG
T ss_pred ---CCceEEEEEEECCCCCCcCCc-c--cCc-ccc-cceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCch
Confidence 223468999999887532 11 0 111 111 47899999999999886543 2356799999987431
Q ss_pred CcccccccCCCCCcEEeeeccc----ceEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEE
Q 004766 282 GLEGFKKRDGLLPFVKLIDGFD----AQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATA 357 (732)
Q Consensus 282 ~~~~~~~~~~~~~~~~l~~~~~----~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~ 357 (732)
. .+.+....+ .....|||||+.|++.++.......|+.++..++. ++.|..+.. .. ....+
T Consensus 215 ~------------~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~-~~~l~~~~~-~~-~~~~~ 279 (695)
T 2bkl_A 215 K------------DTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKD-FRLLVKGVG-AK-YEVHA 279 (695)
T ss_dssp G------------CEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSS-CEEEEECSS-CC-EEEEE
T ss_pred h------------ceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCc-eEEeecCCC-ce-EEEEe
Confidence 1 112222111 11235999999999887654245689999876655 677776552 22 33344
Q ss_pred ecCCEEEEEEecC-CeeEEEEEeCCCCce--eeecccc--cceeeEeecccCCcEEEEEEecCCCCceEEEEECCCC
Q 004766 358 VNLNQMIVSYLSD-VKYVLQIRDLKNGSL--LHQLPIE--IGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTE 429 (732)
Q Consensus 358 ~~~~~l~~~~~~~-g~~~l~~~d~~~g~~--~~~l~~~--~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~ 429 (732)
.+++ +++....+ ...+|+++|+++++. .+.+..+ ...+..++++ ++.+++++..- .-.+++.+++.++
T Consensus 280 ~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~--~~~lv~~~~~d-g~~~l~~~~~~g~ 352 (695)
T 2bkl_A 280 WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV--GGHLSLEYLKD-ATSEVRVATLKGK 352 (695)
T ss_dssp ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE--TTEEEEEEEET-TEEEEEEEETTCC
T ss_pred cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE--CCEEEEEEEEC-CEEEEEEEeCCCC
Confidence 4434 76666544 357899999986652 2344322 3345556655 45677666543 3467888887543
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=99.48 E-value=4.4e-12 Score=134.08 Aligned_cols=255 Identities=13% Similarity=0.029 Sum_probs=154.2
Q ss_pred CCEEEEeEEECCCCcEEEEEEeccCCc-eEEEEEEECCCCceeccc-----ccceeeeeEEEEeCCcEEEEEEecCCCCC
Q 004766 130 GTAALIKVSVSEDAKYLAYALSYSGSD-WATIKLMRIEDQIVEADA-----LSWFKFSSIAWTHDSKGFFYSRYPAPKEG 203 (732)
Q Consensus 130 ~~~~~~~~~~SPDG~~la~~~~~~G~e-~~~i~v~dl~~g~~~~~~-----~~~~~~~~~~WspDg~~l~y~~~~~~~~~ 203 (732)
+...+..++|||||++||-..+....- ...|++|+..++...... .....+..++|+||++.| .+..+
T Consensus 41 H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l-~~s~d----- 114 (357)
T 4g56_B 41 MEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGIL-VASDS----- 114 (357)
T ss_dssp CCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEE-EEETT-----
T ss_pred ccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEE-EEECC-----
Confidence 445688999999999998765432211 257999999887643211 111124789999998644 44322
Q ss_pred CCCCCCCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCc
Q 004766 204 KDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGL 283 (732)
Q Consensus 204 ~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~ 283 (732)
..|.+|++.++.......+....+...+..++|||||++|+..+.++ .|.++|+.++.
T Consensus 115 --------------g~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg-----~v~iwd~~~~~--- 172 (357)
T 4g56_B 115 --------------GAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDF-----SVKVWDLSQKA--- 172 (357)
T ss_dssp --------------SCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTS-----CEEEEETTTTE---
T ss_pred --------------CEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCC-----eEEEEECCCCc---
Confidence 24788888765432222222222344567899999999997665433 37788987642
Q ss_pred ccccccCCCCCcEEeeecccceE-EEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecC-C
Q 004766 284 EGFKKRDGLLPFVKLIDGFDAQY-EVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNL-N 361 (732)
Q Consensus 284 ~~~~~~~~~~~~~~l~~~~~~~~-~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~-~ 361 (732)
....+........ ..|+++++.+++....+ ..|..+|+.+++....+........+..+.++++ +
T Consensus 173 ----------~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~d---g~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~ 239 (357)
T 4g56_B 173 ----------VLKSYNAHSSEVNCVAACPGKDTIFLSCGED---GRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKD 239 (357)
T ss_dssp ----------EEEEECCCSSCEEEEEECTTCSSCEEEEETT---SCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTST
T ss_pred ----------EEEEEcCCCCCEEEEEEccCCCceeeeeccC---CceEEEECCCCceeeeeeeccccccccchhhhhccc
Confidence 1222222222222 24788887655544433 4688889887763332222222355778888874 5
Q ss_pred EEEEEEecCCeeEEEEEeCCCCceeeecccccceeeEeecccCCcEEEEEEecCCCCceEEEEECCCCC
Q 004766 362 QMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 430 (732)
Q Consensus 362 ~l~~~~~~~g~~~l~~~d~~~g~~~~~l~~~~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~~ 430 (732)
.+++....++ .|++||+.+++.++.+..+...|..+.+++++..++++.+.. ..++.+|+.+++
T Consensus 240 ~~la~g~~d~--~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D---~~i~iwd~~~~~ 303 (357)
T 4g56_B 240 DTFACGDETG--NVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISED---CTVAVLDADFSE 303 (357)
T ss_dssp TEEEEEESSS--CEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETT---SCEEEECTTSCE
T ss_pred ceEEEeeccc--ceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCC---CEEEEEECCCCc
Confidence 6777777664 688999988877667766667788889999987666655442 468899988774
|
| >1mj5_A 1,3,4,6-tetrachloro-1,4-cyclohexadiene hydrolase; LINB, haloalkane dehalogenase, 1, 3, 4, 4-cyclohexadiene dehalogenase; 0.95A {Sphingomonas paucimobilis} SCOP: c.69.1.8 PDB: 1cv2_A 1d07_A 2bfn_A 1g42_A* 1g4h_A* 1g5f_A* 1iz7_A 1iz8_A* 1k5p_A 1k63_A 1k6e_A | Back alignment and structure |
|---|
Probab=99.48 E-value=1.5e-13 Score=141.02 Aligned_cols=122 Identities=9% Similarity=-0.006 Sum_probs=86.0
Q ss_pred EccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhccccc
Q 004766 457 PSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALA 536 (732)
Q Consensus 457 ~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~ 536 (732)
...+| .++.+... ++.|+||++||..+... .|... ...|+ .+|.|+++|+||.|.....- ...
T Consensus 14 ~~~~g-~~l~~~~~--------g~~~~vv~lHG~~~~~~--~~~~~-~~~L~-~~~~vi~~D~~G~G~S~~~~----~~~ 76 (302)
T 1mj5_A 14 IEIKG-RRMAYIDE--------GTGDPILFQHGNPTSSY--LWRNI-MPHCA-GLGRLIACDLIGMGDSDKLD----PSG 76 (302)
T ss_dssp EEETT-EEEEEEEE--------SCSSEEEEECCTTCCGG--GGTTT-GGGGT-TSSEEEEECCTTSTTSCCCS----SCS
T ss_pred EEECC-EEEEEEEc--------CCCCEEEEECCCCCchh--hhHHH-HHHhc-cCCeEEEEcCCCCCCCCCCC----CCC
Confidence 34588 88876543 23589999999887643 33332 34466 56899999999987643210 001
Q ss_pred CCccHHHHHHHHHHHHHHcCCCCC-CcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCccc
Q 004766 537 KKQNCFDDFISASEYLISAGYTQS-RKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMD 597 (732)
Q Consensus 537 ~~~~~~~D~~~~~~~l~~~~~~d~-~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d 597 (732)
....+++++.+.+..+++. .+. +++.++|+|+||.+++.++.++|++++++|+..|...
T Consensus 77 ~~~~~~~~~~~~~~~~l~~--l~~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~ 136 (302)
T 1mj5_A 77 PERYAYAEHRDYLDALWEA--LDLGDRVVLVVHDWGSALGFDWARRHRERVQGIAYMEAIAM 136 (302)
T ss_dssp TTSSCHHHHHHHHHHHHHH--TTCTTCEEEEEEHHHHHHHHHHHHHTGGGEEEEEEEEECCS
T ss_pred cccccHHHHHHHHHHHHHH--hCCCceEEEEEECCccHHHHHHHHHCHHHHhheeeecccCC
Confidence 1124567777776666654 234 7899999999999999999999999999998887653
|
| >2rau_A Putative esterase; NP_343859.1, putative lipase, structural genomics, joint CEN structural genomics, JCSG; HET: PG4 UNL; 1.85A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.1e-13 Score=146.00 Aligned_cols=114 Identities=11% Similarity=0.054 Sum_probs=79.5
Q ss_pred CCccEEEEEcCCCCccCCC---CcC----------hhHHHHHHhcCcEEEEEcccCCCCCchhHHh-cccc-cCC-ccHH
Q 004766 479 GSHPCLLYGYGGFNISVTP---SFS----------VSRTILMRHLGAVFCIANIRGGGEYGEEWHK-GGAL-AKK-QNCF 542 (732)
Q Consensus 479 ~~~P~vv~~hG~~~~~~~~---~~~----------~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~-~~~~-~~~-~~~~ 542 (732)
++.|+||++||+.+..... .|. ..+...|.++||.|+++|+||.|.....-.. .+.. ... ....
T Consensus 48 ~~~~~vv~~hG~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~g~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~ 127 (354)
T 2rau_A 48 GGNDAVLILPGTWSSGEQLVTISWNGVHYTIPDYRKSIVLYLARNGFNVYTIDYRTHYVPPFLKDRQLSFTANWGWSTWI 127 (354)
T ss_dssp CCEEEEEEECCTTCCHHHHHHSEETTEECSCCCGGGCHHHHHHHTTEEEEEEECGGGGCCTTCCGGGGGGGTTCSHHHHH
T ss_pred CCCCEEEEECCCCCCccccccccccccccccccchhhHHHHHHhCCCEEEEecCCCCCCCCcccccccccccCCcHHHHH
Confidence 4678999999987764311 122 1344556658999999999998764321100 0000 111 2235
Q ss_pred HHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhC-CCeeeEEEEcCC
Q 004766 543 DDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQR-PDLFGCALAHVG 594 (732)
Q Consensus 543 ~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~-p~~f~a~v~~~p 594 (732)
+|+.++++++.++ .+.+++.++|+|+||++++.++.++ |++++++|+..+
T Consensus 128 ~d~~~~~~~l~~~--~~~~~~~l~G~S~Gg~~a~~~a~~~~p~~v~~lvl~~~ 178 (354)
T 2rau_A 128 SDIKEVVSFIKRD--SGQERIYLAGESFGGIAALNYSSLYWKNDIKGLILLDG 178 (354)
T ss_dssp HHHHHHHHHHHHH--HCCSSEEEEEETHHHHHHHHHHHHHHHHHEEEEEEESC
T ss_pred HHHHHHHHHHHHh--cCCceEEEEEECHhHHHHHHHHHhcCccccceEEEecc
Confidence 7888888888765 3457999999999999999999998 999999998844
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=2.6e-11 Score=127.36 Aligned_cols=249 Identities=8% Similarity=0.009 Sum_probs=157.9
Q ss_pred EEeEEECCCCcEEEEEEeccCC---ceEEEEEEECCCCceecccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCC
Q 004766 134 LIKVSVSEDAKYLAYALSYSGS---DWATIKLMRIEDQIVEADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGT 210 (732)
Q Consensus 134 ~~~~~~SPDG~~la~~~~~~G~---e~~~i~v~dl~~g~~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~ 210 (732)
...+.+||||++|+++.. .+. ....|+++|+++++.+..........+++|+|||+.++++..
T Consensus 43 ~~~~~~s~dg~~l~~~~~-~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~------------- 108 (353)
T 3vgz_A 43 AYEMAYSQQENALWLATS-QSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQTLWFGNT------------- 108 (353)
T ss_dssp EEEEEEETTTTEEEEEEC-CCTTTEESEEEEEECTTTCCEEEEEEESSCCCSEEEETTTTEEEEEET-------------
T ss_pred ccceEECCCCCEEEEEcC-CCcCCCCCccEEEEcCCCCeEEEEEecCCCcceEEECCCCCEEEEEec-------------
Confidence 347889999999965543 321 246899999999986543222223468999999998887742
Q ss_pred cccCCcccEEEEEECCCCCCCCeEEEecCCC-------CeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCc
Q 004766 211 ETDSNLYHEFYYHFLGTKQSEDILCWKDPEH-------PKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGL 283 (732)
Q Consensus 211 ~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~-------~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~ 283 (732)
....|+.+++.++... ..+..... +.....+.+||||+++++..... ...|+++|+.++.
T Consensus 109 -----~~~~v~~~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~---~~~i~~~d~~~~~--- 175 (353)
T 3vgz_A 109 -----VNSAVTAIDAKTGEVK--GRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGK---ESVIWVVDGGNIK--- 175 (353)
T ss_dssp -----TTTEEEEEETTTCCEE--EEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESS---SCEEEEEETTTTE---
T ss_pred -----CCCEEEEEeCCCCeeE--EEEecCCCccccccCCCCCceEEECCCCCEEEEEecCC---CceEEEEcCCCCc---
Confidence 2347888998776432 12222111 11245789999999987765322 3569999988742
Q ss_pred ccccccCCCCCcEEee-ecccceEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEecc-C-CCCCceeEEEEecC
Q 004766 284 EGFKKRDGLLPFVKLI-DGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIP-E-AERDVLESATAVNL 360 (732)
Q Consensus 284 ~~~~~~~~~~~~~~l~-~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~l~~~~~~~~ 360 (732)
....+. .+.......|+|||+.+|+... ...|+.+|+.+++....+.. . .......++.++++
T Consensus 176 ----------~~~~~~~~~~~~~~~~~s~dg~~l~~~~~----~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~d 241 (353)
T 3vgz_A 176 ----------LKTAIQNTGKMSTGLALDSEGKRLYTTNA----DGELITIDTADNKILSRKKLLDDGKEHFFINISLDTA 241 (353)
T ss_dssp ----------EEEEECCCCTTCCCCEEETTTTEEEEECT----TSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETT
T ss_pred ----------eEEEecCCCCccceEEECCCCCEEEEEcC----CCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCC
Confidence 111221 1111222358999998887543 34789999988762222221 1 12344667888875
Q ss_pred C-EEEEEEecCCeeEEEEEeCCCCceeeecccccceeeEeecccCCcEEEEEEecCCCCceEEEEECCCCC
Q 004766 361 N-QMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 430 (732)
Q Consensus 361 ~-~l~~~~~~~g~~~l~~~d~~~g~~~~~l~~~~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~~ 430 (732)
+ .+++....+ ..|++||+.+++.+..+..+.. ..+.++++++.++++... ...++.+|+.+++
T Consensus 242 g~~l~~~~~~~--~~v~~~d~~~~~~~~~~~~~~~--~~~~~s~dg~~l~v~~~~---~~~v~~~d~~~~~ 305 (353)
T 3vgz_A 242 RQRAFITDSKA--AEVLVVDTRNGNILAKVAAPES--LAVLFNPARNEAYVTHRQ---AGKVSVIDAKSYK 305 (353)
T ss_dssp TTEEEEEESSS--SEEEEEETTTCCEEEEEECSSC--CCEEEETTTTEEEEEETT---TTEEEEEETTTTE
T ss_pred CCEEEEEeCCC--CEEEEEECCCCcEEEEEEcCCC--ceEEECCCCCEEEEEECC---CCeEEEEECCCCe
Confidence 4 466554333 5899999988887666665432 346678999987765432 3689999998774
|
| >2xmz_A Hydrolase, alpha/beta hydrolase fold family; menaquinone biosynthesis, lyase; 1.94A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.48 E-value=2.5e-13 Score=137.44 Aligned_cols=105 Identities=11% Similarity=0.064 Sum_probs=77.3
Q ss_pred CCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCccHHHHHHHHHHHHHHcCCC
Q 004766 479 GSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYT 558 (732)
Q Consensus 479 ~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~ 558 (732)
|+.|.||++||..+... .|.. ....|. .+|.|+++|.||.|..... .....+++++.+.+..+++. .
T Consensus 14 G~g~~vvllHG~~~~~~--~~~~-~~~~L~-~~~~vi~~Dl~G~G~S~~~-------~~~~~~~~~~~~dl~~~l~~--l 80 (269)
T 2xmz_A 14 ETNQVLVFLHGFLSDSR--TYHN-HIEKFT-DNYHVITIDLPGHGEDQSS-------MDETWNFDYITTLLDRILDK--Y 80 (269)
T ss_dssp CCSEEEEEECCTTCCGG--GGTT-THHHHH-TTSEEEEECCTTSTTCCCC-------TTSCCCHHHHHHHHHHHHGG--G
T ss_pred CCCCeEEEEcCCCCcHH--HHHH-HHHHHh-hcCeEEEecCCCCCCCCCC-------CCCccCHHHHHHHHHHHHHH--c
Confidence 34457999999887654 3443 345567 5699999999998864321 01134667777766666655 2
Q ss_pred CCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCcc
Q 004766 559 QSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVM 596 (732)
Q Consensus 559 d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~ 596 (732)
..+++.++|+|+||.++..++.++|++++++|+..|..
T Consensus 81 ~~~~~~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~~~~ 118 (269)
T 2xmz_A 81 KDKSITLFGYSMGGRVALYYAINGHIPISNLILESTSP 118 (269)
T ss_dssp TTSEEEEEEETHHHHHHHHHHHHCSSCCSEEEEESCCS
T ss_pred CCCcEEEEEECchHHHHHHHHHhCchheeeeEEEcCCc
Confidence 34689999999999999999999999999999887643
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.2e-11 Score=128.56 Aligned_cols=238 Identities=14% Similarity=0.061 Sum_probs=157.1
Q ss_pred CEEEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceeccc-ccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCC
Q 004766 131 TAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADA-LSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAG 209 (732)
Q Consensus 131 ~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~-~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~ 209 (732)
...+..+.++|+++.++-.. ...+|++||+++++.+... ........++|+|||+.|+....
T Consensus 80 ~~~v~~~~~~~~~~~l~s~s-----~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~------------ 142 (321)
T 3ow8_A 80 QLGVVSVDISHTLPIAASSS-----LDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTH------------ 142 (321)
T ss_dssp SSCEEEEEECSSSSEEEEEE-----TTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECT------------
T ss_pred CCCEEEEEECCCCCEEEEEe-----CCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcC------------
Confidence 34577889999999877442 2248999999999855321 11122367999999999887642
Q ss_pred CcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCccccccc
Q 004766 210 TETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKR 289 (732)
Q Consensus 210 ~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~ 289 (732)
...|.+|++.++.. ...+.. .......++|||||++|+....++ .|.++|+.++.
T Consensus 143 -------dg~v~i~~~~~~~~--~~~~~~--~~~~v~~~~~spdg~~lasg~~dg-----~i~iwd~~~~~--------- 197 (321)
T 3ow8_A 143 -------VGKVNIFGVESGKK--EYSLDT--RGKFILSIAYSPDGKYLASGAIDG-----IINIFDIATGK--------- 197 (321)
T ss_dssp -------TSEEEEEETTTCSE--EEEEEC--SSSCEEEEEECTTSSEEEEEETTS-----CEEEEETTTTE---------
T ss_pred -------CCcEEEEEcCCCce--eEEecC--CCceEEEEEECCCCCEEEEEcCCC-----eEEEEECCCCc---------
Confidence 33688889876542 222222 234567899999999998766443 38888987642
Q ss_pred CCCCCcEEeeeccc-ceEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecCCEEEEEEe
Q 004766 290 DGLLPFVKLIDGFD-AQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYL 368 (732)
Q Consensus 290 ~~~~~~~~l~~~~~-~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~~l~~~~~ 368 (732)
....+..... .....|+|+|+.|+..+. ...|..+|+.++.....+..+. ..+..+.+++++..+++..
T Consensus 198 ----~~~~~~~h~~~v~~l~~spd~~~l~s~s~----dg~i~iwd~~~~~~~~~~~~h~--~~v~~~~~sp~~~~l~s~s 267 (321)
T 3ow8_A 198 ----LLHTLEGHAMPIRSLTFSPDSQLLVTASD----DGYIKIYDVQHANLAGTLSGHA--SWVLNVAFCPDDTHFVSSS 267 (321)
T ss_dssp ----EEEEECCCSSCCCEEEECTTSCEEEEECT----TSCEEEEETTTCCEEEEECCCS--SCEEEEEECTTSSEEEEEE
T ss_pred ----EEEEEcccCCceeEEEEcCCCCEEEEEcC----CCeEEEEECCCcceeEEEcCCC--CceEEEEECCCCCEEEEEe
Confidence 1222222111 122358999887665433 3458888988776344444443 5678899998777777877
Q ss_pred cCCeeEEEEEeCCCCceeeecccccceeeEeecccCCcEEEEEEecCCCCceEEEEEC
Q 004766 369 SDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNL 426 (732)
Q Consensus 369 ~~g~~~l~~~d~~~g~~~~~l~~~~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~ 426 (732)
.++ .|.+||+.+++.+..+..+.+.|..+.++++++.++ +.+. -..+..||.
T Consensus 268 ~D~--~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~-s~~~---d~~i~vwd~ 319 (321)
T 3ow8_A 268 SDK--SVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIV-SVGD---DQEIHIYDC 319 (321)
T ss_dssp TTS--CEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEE-EEET---TCCEEEEEC
T ss_pred CCC--cEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-EEeC---CCeEEEEeC
Confidence 774 688999988877666665567788889999988654 3332 234555553
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.48 E-value=5e-12 Score=145.45 Aligned_cols=262 Identities=10% Similarity=-0.027 Sum_probs=159.4
Q ss_pred EEEeEEECCCCcEEEEEEecc-CCceEEEEEEECCCCceecccccceeee---------eEEEE--eCCcE-EEEEEecC
Q 004766 133 ALIKVSVSEDAKYLAYALSYS-GSDWATIKLMRIEDQIVEADALSWFKFS---------SIAWT--HDSKG-FFYSRYPA 199 (732)
Q Consensus 133 ~~~~~~~SPDG~~la~~~~~~-G~e~~~i~v~dl~~g~~~~~~~~~~~~~---------~~~Ws--pDg~~-l~y~~~~~ 199 (732)
.+..+++|+| +++|+..+. ......||++ ..+|+....+....... .+.|+ |||+. |+|+..
T Consensus 25 ~~~~~~~s~~--~~~~~~~~~~~~~~~~l~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~-- 99 (662)
T 3azo_A 25 RPACVGAVGD--EVWWVAPRPAEAGRATLVRR-RADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHF-- 99 (662)
T ss_dssp CCEEEEEETT--EEEEEEEETTTTTEEEEEEE-CTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBT--
T ss_pred ccceeEEcCC--eEEEEecCcccCCcEEEEEE-CCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEEEC--
Confidence 3568889865 688887632 2234677776 45565433222211112 56787 99999 998742
Q ss_pred CCCCCCCCCCCcccCCcccEEEEEECC--C-CCCCCeEEEecCC--CCeeEEEeEEecCCcEEEEEEecCC-----cceE
Q 004766 200 PKEGKDMDAGTETDSNLYHEFYYHFLG--T-KQSEDILCWKDPE--HPKYIFSGHVTEDGQYLVMCIEENC-----DPVN 269 (732)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~v~~~~lg--t-~~~~~~~v~~~~~--~~~~~~~~~~SpDg~~l~~~~~~~~-----~~~~ 269 (732)
...+||.++++ + +.. ..+...+. .......++|||||++|++.+.+.. ....
T Consensus 100 ----------------~~~~l~~~~~~~~g~~~~--~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~ 161 (662)
T 3azo_A 100 ----------------GDQRLYAFEPDAPGGAVP--RPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRR 161 (662)
T ss_dssp ----------------TTCCEEEECTTSTTCCCC--EECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEE
T ss_pred ----------------CCCeEEEEcCCCCCCCCC--EeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCcee
Confidence 13469999986 3 332 22222110 2334568999999999999876521 2247
Q ss_pred EEEEEeCCCCCCCcccccccCCCCCcEEee-ecccc-eEEEEEecCCeEEEEeCCCC----CCceEEEEeCC-CCC--Cc
Q 004766 270 KVYYCDLSALPEGLEGFKKRDGLLPFVKLI-DGFDA-QYEVIANDDTVFTFLTNKDA----PKYKIIRVDLK-EPN--DW 340 (732)
Q Consensus 270 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~-~~~~~s~dg~~l~~~s~~~~----~~~~l~~~d~~-~~~--~~ 340 (732)
+||++++.+++.. .....+.++ .+... ....|||||+.|++.+.... ....|+++|++ ++. ..
T Consensus 162 ~i~~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~ 233 (662)
T 3azo_A 162 FLAAVPLDGSAAA--------DRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADT 233 (662)
T ss_dssp EEEEEETTSTTTT--------CGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEE
T ss_pred EEEEEECCCCccc--------cCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCccccc
Confidence 8999999872000 000133444 32211 12359999999998875431 23589999998 451 24
Q ss_pred eEeccCCCCCceeEEEEecCCEEEEEEecCCeeEEEEEeCCCCceeeecccccce---------eeEeecccCCcEEEEE
Q 004766 341 FEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGS---------VNAISARREDSVVFIS 411 (732)
Q Consensus 341 ~~l~~~~~~~~l~~~~~~~~~~l~~~~~~~g~~~l~~~d~~~g~~~~~l~~~~g~---------v~~~~~s~d~~~l~~~ 411 (732)
+.+.... ...+..+.|++|+.+++....++..+|+++++++|+. +.+...... +..+.+++++. ++++
T Consensus 234 ~~l~~~~-~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~-~~l~~~~~~~~~p~w~~~~~~~~~~~~~~-~~~~ 310 (662)
T 3azo_A 234 RTLLGGP-EEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAA-TQLCRREEEFAGPLWTPGMRWFAPLANGL-IAVV 310 (662)
T ss_dssp EEEEEET-TBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCE-EESSCCSSBSSCCCCSTTCCSEEECTTSC-EEEE
T ss_pred EEeCCCC-CceEcceEECCCCeEEEEECCCCCeEEEEEECCCCce-eecccccccccCccccccCceEeEeCCCE-EEEE
Confidence 5555432 2456788999877788888888777999999876765 444422111 22344556665 5555
Q ss_pred EecCCCCceEEEEECCCCC
Q 004766 412 FTSFLIPGIVYQCNLKTET 430 (732)
Q Consensus 412 ~ss~~~p~~~y~~d~~~~~ 430 (732)
.+. .-..+|.+|+.+++
T Consensus 311 ~~~--~~~~l~~~d~~~~~ 327 (662)
T 3azo_A 311 HGK--GAAVLGILDPESGE 327 (662)
T ss_dssp EBS--SSCEEEEEETTTTE
T ss_pred EEc--CccEEEEEECCCCc
Confidence 554 55789999987763
|
| >3kda_A CFTR inhibitory factor (CIF); alpha/beta hydrolase, hydrolase; 1.50A {Pseudomonas aeruginosa ucbpp-pa14} PDB: 3kd2_A 3pi6_A | Back alignment and structure |
|---|
Probab=99.47 E-value=2.2e-13 Score=139.73 Aligned_cols=115 Identities=9% Similarity=-0.043 Sum_probs=84.5
Q ss_pred ccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccC
Q 004766 458 SKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAK 537 (732)
Q Consensus 458 s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~ 537 (732)
..+| .++.+...- ..|+||++||..+... .|... ...|.++ |.|+++|.||.|..... .
T Consensus 16 ~~~g-~~l~~~~~g--------~~~~vv~lHG~~~~~~--~~~~~-~~~L~~~-~~vi~~D~~G~G~S~~~--------~ 74 (301)
T 3kda_A 16 EVDG-VKLHYVKGG--------QGPLVMLVHGFGQTWY--EWHQL-MPELAKR-FTVIAPDLPGLGQSEPP--------K 74 (301)
T ss_dssp EETT-EEEEEEEEE--------SSSEEEEECCTTCCGG--GGTTT-HHHHTTT-SEEEEECCTTSTTCCCC--------S
T ss_pred eeCC-eEEEEEEcC--------CCCEEEEECCCCcchh--HHHHH-HHHHHhc-CeEEEEcCCCCCCCCCC--------C
Confidence 3488 888876542 4579999999987653 34443 4556645 99999999998865332 2
Q ss_pred CccHHHHHHHHHHHHHHcCCCCCCc-EEEEecChhHHHHHHHHhhCCCeeeEEEEcCCc
Q 004766 538 KQNCFDDFISASEYLISAGYTQSRK-LCIEGGSNGGLLVGACINQRPDLFGCALAHVGV 595 (732)
Q Consensus 538 ~~~~~~D~~~~~~~l~~~~~~d~~~-i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~ 595 (732)
...+++++.+.+..+++. ...++ +.++|+|+||.++..++.++|++++++|+..|.
T Consensus 75 ~~~~~~~~~~~l~~~l~~--l~~~~p~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~ 131 (301)
T 3kda_A 75 TGYSGEQVAVYLHKLARQ--FSPDRPFDLVAHDIGIWNTYPMVVKNQADIARLVYMEAP 131 (301)
T ss_dssp SCSSHHHHHHHHHHHHHH--HCSSSCEEEEEETHHHHTTHHHHHHCGGGEEEEEEESSC
T ss_pred CCccHHHHHHHHHHHHHH--cCCCccEEEEEeCccHHHHHHHHHhChhhccEEEEEccC
Confidence 234566666666655544 23457 999999999999999999999999999988875
|
| >3bf7_A Esterase YBFF; thioesterase, helical CAP, hydrolase; 1.10A {Escherichia coli} PDB: 3bf8_A | Back alignment and structure |
|---|
Probab=99.47 E-value=5e-13 Score=134.03 Aligned_cols=204 Identities=16% Similarity=0.055 Sum_probs=119.8
Q ss_pred CccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCccHHHHHHHHHHHHHHcCCCC
Q 004766 480 SHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQ 559 (732)
Q Consensus 480 ~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d 559 (732)
..|.||++||..+... .|.. ....|+ ..|.|+++|.||.|..... ...+++++.+.+..+++. ..
T Consensus 15 ~~~~vvllHG~~~~~~--~w~~-~~~~L~-~~~~via~Dl~G~G~S~~~---------~~~~~~~~a~dl~~~l~~--l~ 79 (255)
T 3bf7_A 15 NNSPIVLVHGLFGSLD--NLGV-LARDLV-NDHNIIQVDVRNHGLSPRE---------PVMNYPAMAQDLVDTLDA--LQ 79 (255)
T ss_dssp CCCCEEEECCTTCCTT--TTHH-HHHHHT-TTSCEEEECCTTSTTSCCC---------SCCCHHHHHHHHHHHHHH--HT
T ss_pred CCCCEEEEcCCcccHh--HHHH-HHHHHH-hhCcEEEecCCCCCCCCCC---------CCcCHHHHHHHHHHHHHH--cC
Confidence 4578999999877643 3443 345566 5599999999998864321 122444544444433332 12
Q ss_pred CCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcC--Ccccccc-c------c---cC-CCCCcc-ccc-cCC-CCCHHHH
Q 004766 560 SRKLCIEGGSNGGLLVGACINQRPDLFGCALAHV--GVMDMLR-Y------H---KF-TIGHAW-VSD-FGC-SEEEEEF 623 (732)
Q Consensus 560 ~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~--p~~d~~~-~------~---~~-~~~~~~-~~~-~g~-p~~~~~~ 623 (732)
.+++.++|+|+||.+++.++.++|++++++|+.. |...... . . .. ...... ..+ +.. ..++...
T Consensus 80 ~~~~~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (255)
T 3bf7_A 80 IDKATFIGHSMGGKAVMALTALAPDRIDKLVAIDIAPVDYHVRRHDEIFAAINAVSESDAQTRQQAAAIMRQHLNEEGVI 159 (255)
T ss_dssp CSCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSSCCCSCCCHHHHHHHHHHHHSCCCSHHHHHHHHTTTCCCHHHH
T ss_pred CCCeeEEeeCccHHHHHHHHHhCcHhhccEEEEcCCcccCCcccHHHHHHHHHhccccccccHHHHHHHHhhhcchhHHH
Confidence 3589999999999999999999999999998753 3211100 0 0 00 000000 000 000 0111111
Q ss_pred HHHHh--------------------cCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhcCCC
Q 004766 624 YWLIK--------------------YSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSL 683 (732)
Q Consensus 624 ~~~~~--------------------~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~ 683 (732)
..+.. ......+. .+..|+|+++|.+|..+++.++.++.+.+.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----------~i~~P~l~i~G~~D~~~~~~~~~~~~~~~~------- 222 (255)
T 3bf7_A 160 QFLLKSFVDGEWRFNVPVLWDQYPHIVGWEKIP----------AWDHPALFIPGGNSPYVSEQYRDDLLAQFP------- 222 (255)
T ss_dssp HHHHTTEETTEESSCHHHHHHTHHHHHCCCCCC----------CCCSCEEEECBTTCSTTCGGGHHHHHHHCT-------
T ss_pred HHHHHhccCCceeecHHHHHhhhhhcccccccc----------ccCCCeEEEECCCCCCCCHHHHHHHHHHCC-------
Confidence 11110 00001111 378999999999999999988776655432
Q ss_pred CCCCCCCCEEEEEeCCCCCCCCCchHHHHHHHHHHHHHHHH
Q 004766 684 ENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAK 724 (732)
Q Consensus 684 ~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~ 724 (732)
..++++++++||....... ....+.+.+||.+
T Consensus 223 -------~~~~~~i~~~gH~~~~e~p--~~~~~~i~~fl~~ 254 (255)
T 3bf7_A 223 -------QARAHVIAGAGHWVHAEKP--DAVLRAIRRYLND 254 (255)
T ss_dssp -------TEEECCBTTCCSCHHHHCH--HHHHHHHHHHHHT
T ss_pred -------CCeEEEeCCCCCccccCCH--HHHHHHHHHHHhc
Confidence 2688999999998643322 2445567788864
|
| >1isp_A Lipase; alpha/beta hydrolase fold, hydrolase; 1.30A {Bacillus subtilis} SCOP: c.69.1.18 PDB: 1i6w_A 1r4z_A* 1r50_A* 2qxu_A 2qxt_A 1t4m_A 1t2n_A 3d2a_A 3qzu_A 3d2b_A 3d2c_A 3qmm_A | Back alignment and structure |
|---|
Probab=99.47 E-value=8.9e-13 Score=124.64 Aligned_cols=169 Identities=12% Similarity=-0.047 Sum_probs=117.1
Q ss_pred ccEEEEEcCCCCccCCCCcChhHHHHHHhcCc---EEEEEcccCCCCCchhHHhcccccCCccHHHHHHHHHHHHHHcCC
Q 004766 481 HPCLLYGYGGFNISVTPSFSVSRTILMRHLGA---VFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGY 557 (732)
Q Consensus 481 ~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~---~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~ 557 (732)
.|+||++||..+... .|. .+...|.++|| .|+.+|+||.|.... ..++++.+.++.+++.
T Consensus 3 ~~~vv~~HG~~~~~~--~~~-~~~~~l~~~G~~~~~v~~~d~~g~g~s~~------------~~~~~~~~~~~~~~~~-- 65 (181)
T 1isp_A 3 HNPVVMVHGIGGASF--NFA-GIKSYLVSQGWSRDKLYAVDFWDKTGTNY------------NNGPVLSRFVQKVLDE-- 65 (181)
T ss_dssp CCCEEEECCTTCCGG--GGH-HHHHHHHHTTCCGGGEEECCCSCTTCCHH------------HHHHHHHHHHHHHHHH--
T ss_pred CCeEEEECCcCCCHh--HHH-HHHHHHHHcCCCCccEEEEecCCCCCchh------------hhHHHHHHHHHHHHHH--
Confidence 578999999876542 343 34556666898 599999999775422 2456666666666654
Q ss_pred CCCCcEEEEecChhHHHHHHHHhhC--CCeeeEEEEcCCcccccccccCCCCCccccccCCCCCHHHHHHHHhcCcccCC
Q 004766 558 TQSRKLCIEGGSNGGLLVGACINQR--PDLFGCALAHVGVMDMLRYHKFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNV 635 (732)
Q Consensus 558 ~d~~~i~i~G~S~GG~l~~~~~~~~--p~~f~a~v~~~p~~d~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~sp~~~~ 635 (732)
.+.+++.++|+|+||+++..++.++ |++++++|+..|......... + +. .
T Consensus 66 ~~~~~~~lvG~S~Gg~~a~~~~~~~~~~~~v~~~v~~~~~~~~~~~~~----------~--~~----------------~ 117 (181)
T 1isp_A 66 TGAKKVDIVAHSMGGANTLYYIKNLDGGNKVANVVTLGGANRLTTGKA----------L--PG----------------T 117 (181)
T ss_dssp HCCSCEEEEEETHHHHHHHHHHHHSSGGGTEEEEEEESCCGGGTCSBC----------C--CC----------------S
T ss_pred cCCCeEEEEEECccHHHHHHHHHhcCCCceEEEEEEEcCccccccccc----------C--CC----------------C
Confidence 2457899999999999999999987 899999999988755321100 0 00 0
Q ss_pred CCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeCCCCCCCCCchHHHHHHH
Q 004766 636 RRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEA 715 (732)
Q Consensus 636 ~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~ 715 (732)
.. ....|+|+++|++|..||+..+. + ...++++++++||....... +..
T Consensus 118 ~~---------~~~~p~l~i~G~~D~~v~~~~~~-----~--------------~~~~~~~~~~~gH~~~~~~~---~~~ 166 (181)
T 1isp_A 118 DP---------NQKILYTSIYSSADMIVMNYLSR-----L--------------DGARNVQIHGVGHIGLLYSS---QVN 166 (181)
T ss_dssp CT---------TCCCEEEEEEETTCSSSCHHHHC-----C--------------BTSEEEEESSCCTGGGGGCH---HHH
T ss_pred CC---------ccCCcEEEEecCCCccccccccc-----C--------------CCCcceeeccCchHhhccCH---HHH
Confidence 01 13569999999999999987431 1 12478889999998754332 455
Q ss_pred HHHHHHHHHH
Q 004766 716 ADRYGFMAKM 725 (732)
Q Consensus 716 ~~~~~fl~~~ 725 (732)
+.+.+||.+.
T Consensus 167 ~~i~~fl~~~ 176 (181)
T 1isp_A 167 SLIKEGLNGG 176 (181)
T ss_dssp HHHHHHHTTT
T ss_pred HHHHHHHhcc
Confidence 6677887653
|
| >2wue_A 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrolase BPHD; HET: KEK; 1.80A {Mycobacterium tuberculosis} PDB: 2wud_A* 2wuf_A* 2wug_A* 2vf2_A | Back alignment and structure |
|---|
Probab=99.46 E-value=5.2e-13 Score=136.87 Aligned_cols=214 Identities=14% Similarity=0.027 Sum_probs=124.5
Q ss_pred CCccEEEEEcCC-CCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCccHHHHHHHHHHHHHHcCC
Q 004766 479 GSHPCLLYGYGG-FNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGY 557 (732)
Q Consensus 479 ~~~P~vv~~hG~-~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~ 557 (732)
++.|.||++||. ++......|.... ..|. ..|.|+++|.||.|..... .....+++++.+.+..+++.
T Consensus 34 g~~~~vvllHG~~pg~~~~~~w~~~~-~~L~-~~~~via~Dl~G~G~S~~~-------~~~~~~~~~~a~dl~~~l~~-- 102 (291)
T 2wue_A 34 GNDQTVVLLHGGGPGAASWTNFSRNI-AVLA-RHFHVLAVDQPGYGHSDKR-------AEHGQFNRYAAMALKGLFDQ-- 102 (291)
T ss_dssp TCSSEEEEECCCCTTCCHHHHTTTTH-HHHT-TTSEEEEECCTTSTTSCCC-------SCCSSHHHHHHHHHHHHHHH--
T ss_pred CCCCcEEEECCCCCccchHHHHHHHH-HHHH-hcCEEEEECCCCCCCCCCC-------CCCCcCHHHHHHHHHHHHHH--
Confidence 344699999997 4322222344433 4566 5599999999998864321 11134667776666655554
Q ss_pred CCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCcccccccc------------cC-CCCC-----ccccc-cCCC-
Q 004766 558 TQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYH------------KF-TIGH-----AWVSD-FGCS- 617 (732)
Q Consensus 558 ~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~------------~~-~~~~-----~~~~~-~g~p- 617 (732)
...+++.++|+|+||.++..++.++|++++++|+..|........ .. .... .+... +.++
T Consensus 103 l~~~~~~lvGhS~Gg~ia~~~A~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (291)
T 2wue_A 103 LGLGRVPLVGNALGGGTAVRFALDYPARAGRLVLMGPGGLSINLFAPDPTEGVKRLSKFSVAPTRENLEAFLRVMVYDKN 182 (291)
T ss_dssp HTCCSEEEEEETHHHHHHHHHHHHSTTTEEEEEEESCSSSCCCSSSCSSCHHHHHHHHHHHSCCHHHHHHHHHTSCSSGG
T ss_pred hCCCCeEEEEEChhHHHHHHHHHhChHhhcEEEEECCCCCCccccccccchhhHHHHHHhccCCHHHHHHHHHHhccCcc
Confidence 234689999999999999999999999999999887653210000 00 0000 00000 0111
Q ss_pred -CCHHH-------------HHHHHh----cC--cccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHH
Q 004766 618 -EEEEE-------------FYWLIK----YS--PLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQY 677 (732)
Q Consensus 618 -~~~~~-------------~~~~~~----~s--p~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~ 677 (732)
..++. +..+.. +. ...... .| +....+..|+||++|.+|..+|+..+.++++.+.
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~l~~i~~P~lvi~G~~D~~~~~~~~~~~~~~~p- 257 (291)
T 2wue_A 183 LITPELVDQRFALASTPESLTATRAMGKSFAGADFEAGM-MW---REVYRLRQPVLLIWGREDRVNPLDGALVALKTIP- 257 (291)
T ss_dssp GSCHHHHHHHHHHHTSHHHHHHHHHHHHHHTSTTGGGGC-GG---GTGGGCCSCEEEEEETTCSSSCGGGGHHHHHHST-
T ss_pred cCCHHHHHHHHHHhcCchHHHHHHHHHhhccccccccch-hH---HHHhhCCCCeEEEecCCCCCCCHHHHHHHHHHCC-
Confidence 01111 111111 00 000000 00 0011378999999999999999998887766543
Q ss_pred hhcCCCCCCCCCCCEEEEEeCCCCCCCCCchHHHHHHHHHHHHHHH
Q 004766 678 VLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMA 723 (732)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~ 723 (732)
..++++++++||....... .+..+.+.+||.
T Consensus 258 -------------~~~~~~i~~~gH~~~~e~p--~~~~~~i~~fl~ 288 (291)
T 2wue_A 258 -------------RAQLHVFGQCGHWVQVEKF--DEFNKLTIEFLG 288 (291)
T ss_dssp -------------TEEEEEESSCCSCHHHHTH--HHHHHHHHHHTT
T ss_pred -------------CCeEEEeCCCCCChhhhCH--HHHHHHHHHHHh
Confidence 2588899999998643222 234455667764
|
| >3bwx_A Alpha/beta hydrolase; YP_496220.1, joint center for structural genomics, protein structure initiative, PSI-2; HET: MSE; 1.50A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.5e-12 Score=132.71 Aligned_cols=123 Identities=17% Similarity=0.143 Sum_probs=83.4
Q ss_pred EEEEEEccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHh
Q 004766 452 HQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHK 531 (732)
Q Consensus 452 ~~~~~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~ 531 (732)
+...+.+.+| .++.+...-+++ +.|.||++||..+... .|.. +...|+ .||.|+++|.||.|.....
T Consensus 6 ~~~~~~~~~g-~~l~~~~~g~~~-----~~~~vvllHG~~~~~~--~~~~-~~~~L~-~~~~vi~~Dl~G~G~S~~~--- 72 (285)
T 3bwx_A 6 EDRYWTSSDG-LRLHFRAYEGDI-----SRPPVLCLPGLTRNAR--DFED-LATRLA-GDWRVLCPEMRGRGDSDYA--- 72 (285)
T ss_dssp EEEEEECTTS-CEEEEEEECBCT-----TSCCEEEECCTTCCGG--GGHH-HHHHHB-BTBCEEEECCTTBTTSCCC---
T ss_pred ccCeeecCCC-ceEEEEEcCCCC-----CCCcEEEECCCCcchh--hHHH-HHHHhh-cCCEEEeecCCCCCCCCCC---
Confidence 3445677799 899887664332 2578999999876542 3443 456677 5999999999998864321
Q ss_pred cccccCCccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEc
Q 004766 532 GGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAH 592 (732)
Q Consensus 532 ~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~ 592 (732)
......+++++.+.+..+++. ...+++.++|+|+||.++..++.++|++++++|+.
T Consensus 73 ---~~~~~~~~~~~a~dl~~~l~~--l~~~~~~lvGhS~Gg~va~~~a~~~p~~v~~lvl~ 128 (285)
T 3bwx_A 73 ---KDPMTYQPMQYLQDLEALLAQ--EGIERFVAIGTSLGGLLTMLLAAANPARIAAAVLN 128 (285)
T ss_dssp ---SSGGGCSHHHHHHHHHHHHHH--HTCCSEEEEEETHHHHHHHHHHHHCGGGEEEEEEE
T ss_pred ---CCccccCHHHHHHHHHHHHHh--cCCCceEEEEeCHHHHHHHHHHHhCchheeEEEEe
Confidence 000112344444333333332 12358999999999999999999999999999875
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.46 E-value=3.2e-11 Score=126.63 Aligned_cols=253 Identities=12% Similarity=0.046 Sum_probs=155.1
Q ss_pred EEEEeEEECCCCcEEEEEEeccCCc-eEEEEEEECCCCceec----cc-ccceeeeeEEEEeCCcEEEEEEecCCCCCCC
Q 004766 132 AALIKVSVSEDAKYLAYALSYSGSD-WATIKLMRIEDQIVEA----DA-LSWFKFSSIAWTHDSKGFFYSRYPAPKEGKD 205 (732)
Q Consensus 132 ~~~~~~~~SPDG~~la~~~~~~G~e-~~~i~v~dl~~g~~~~----~~-~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~ 205 (732)
..+..++|||||++|+-..+..+.- ...+++++........ .. ........++|+||+ .|+....+
T Consensus 31 ~~v~~~~fs~dG~~l~~~sd~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~d------- 102 (344)
T 4gqb_B 31 RQLEAARYRSDGALLLGASSLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDS------- 102 (344)
T ss_dssp SEEEEEEECTTSCEEEEEECCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETT-------
T ss_pred CCEEEEEECCCCCEEEEEeCCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECC-------
Confidence 3477899999999988665332211 1244444432211110 00 011124789999996 46655432
Q ss_pred CCCCCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCccc
Q 004766 206 MDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEG 285 (732)
Q Consensus 206 ~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~ 285 (732)
..|.+|++.+++......+....+...+..++|||||++|+..+.++. |.++|+.++.
T Consensus 103 ------------g~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~-----i~iwd~~~~~----- 160 (344)
T 4gqb_B 103 ------------GAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDIC-----IKVWDLAQQV----- 160 (344)
T ss_dssp ------------SEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSC-----EEEEETTTTE-----
T ss_pred ------------CEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCe-----EEEEECCCCc-----
Confidence 368999998775443222222223445678999999999987654433 7888988742
Q ss_pred ccccCCCCCcEEeeecccceE-EEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEec-CCEE
Q 004766 286 FKKRDGLLPFVKLIDGFDAQY-EVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVN-LNQM 363 (732)
Q Consensus 286 ~~~~~~~~~~~~l~~~~~~~~-~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~-~~~l 363 (732)
....+........ ..|++++..+++....+ ..|..+|+.+++....+........+..+.+++ ++.+
T Consensus 161 --------~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D---~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 229 (344)
T 4gqb_B 161 --------VLSSYRAHAAQVTCVAASPHKDSVFLSCSED---NRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEV 229 (344)
T ss_dssp --------EEEEECCCSSCEEEEEECSSCTTEEEEEETT---SCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTE
T ss_pred --------EEEEEcCcCCceEEEEecCCCCCceeeeccc---cccccccccccceeeeeecceeeccceeeeecCCCCcc
Confidence 1223322222222 24888887766554433 368888998876444443333345577788886 3567
Q ss_pred EEEEecCCeeEEEEEeCCCCceeeecccccceeeEeecccCCcEEEEEEecCCCCceEEEEECCCCC
Q 004766 364 IVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 430 (732)
Q Consensus 364 ~~~~~~~g~~~l~~~d~~~g~~~~~l~~~~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~~ 430 (732)
+++...++ .|++||+.+++.+..+..+...|..+.++|++..++++.+.. ..++.+|+.+++
T Consensus 230 l~sg~~dg--~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D---~~i~vwd~~~~~ 291 (344)
T 4gqb_B 230 FVFGDENG--TVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSED---CSLAVLDSSLSE 291 (344)
T ss_dssp EEEEETTS--EEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETT---SCEEEECTTCCE
T ss_pred eEEeccCC--cEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCC---CeEEEEECCCCc
Confidence 77777774 789999988887777776677788899999987666665543 468889988773
|
| >1wom_A RSBQ, sigma factor SIGB regulation protein RSBQ; alpha/beta hydrolase, signaling protein; 2.50A {Bacillus subtilis} PDB: 1wpr_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=5.8e-13 Score=134.92 Aligned_cols=210 Identities=11% Similarity=0.042 Sum_probs=125.4
Q ss_pred ccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCccHHHHHHHHHHHHHHcCCCCC
Q 004766 481 HPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQS 560 (732)
Q Consensus 481 ~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~ 560 (732)
.|+||++||..+... .|... ...|+ .+|.|+++|.||.|.....-. ......+++++.+.+..+++. .+.
T Consensus 20 ~~~vvllHG~~~~~~--~w~~~-~~~L~-~~~~vi~~Dl~G~G~S~~~~~----~~~~~~~~~~~a~dl~~~l~~--l~~ 89 (271)
T 1wom_A 20 KASIMFAPGFGCDQS--VWNAV-APAFE-EDHRVILFDYVGSGHSDLRAY----DLNRYQTLDGYAQDVLDVCEA--LDL 89 (271)
T ss_dssp SSEEEEECCTTCCGG--GGTTT-GGGGT-TTSEEEECCCSCCSSSCCTTC----CTTGGGSHHHHHHHHHHHHHH--TTC
T ss_pred CCcEEEEcCCCCchh--hHHHH-HHHHH-hcCeEEEECCCCCCCCCCCcc----cccccccHHHHHHHHHHHHHH--cCC
Confidence 378999999766543 34432 34466 689999999999886532100 001123455555555544443 234
Q ss_pred CcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCcccccccc-----cCC-------------CCCcccc-----ccCCC
Q 004766 561 RKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYH-----KFT-------------IGHAWVS-----DFGCS 617 (732)
Q Consensus 561 ~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~-----~~~-------------~~~~~~~-----~~g~p 617 (732)
+++.++|+|+||.+++.++.++|++++++|+..|........ .+. ....|.. .++.+
T Consensus 90 ~~~~lvGhS~GG~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (271)
T 1wom_A 90 KETVFVGHSVGALIGMLASIRRPELFSHLVMVGPSPCYLNDPPEYYGGFEEEQLLGLLEMMEKNYIGWATVFAATVLNQP 169 (271)
T ss_dssp SCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSCCBEETTTEECSBCHHHHHHHHHHHHHCHHHHHHHHHHHHHCCT
T ss_pred CCeEEEEeCHHHHHHHHHHHhCHHhhcceEEEcCCCcCCCCCchhccCCCHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC
Confidence 689999999999999999999999999999877642111000 000 0000100 01222
Q ss_pred CCHHHHHH----HHhcCc---------------ccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHh
Q 004766 618 EEEEEFYW----LIKYSP---------------LHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYV 678 (732)
Q Consensus 618 ~~~~~~~~----~~~~sp---------------~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~ 678 (732)
..++..+. +....| ...+. .+..|+|+++|.+|..+|+..+.++.+.+.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----------~i~~P~lvi~G~~D~~~~~~~~~~~~~~~~-- 237 (271)
T 1wom_A 170 DRPEIKEELESRFCSTDPVIARQFAKAAFFSDHREDLS----------KVTVPSLILQCADDIIAPATVGKYMHQHLP-- 237 (271)
T ss_dssp TCHHHHHHHHHHHHHSCHHHHHHHHHHHHSCCCHHHHT----------TCCSCEEEEEEETCSSSCHHHHHHHHHHSS--
T ss_pred CchHHHHHHHHHHhcCCcHHHHHHHHHHhCcchHHhcc----------ccCCCEEEEEcCCCCcCCHHHHHHHHHHCC--
Confidence 22221111 111111 01112 378999999999999999887776665433
Q ss_pred hcCCCCCCCCCCCEEEEEeCCCCCCCCCchHHHHHHHHHHHHHHHHHh
Q 004766 679 LCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKML 726 (732)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l 726 (732)
..++++++++||....... .+..+.+.+||.+++
T Consensus 238 ------------~~~~~~i~~~gH~~~~e~p--~~~~~~i~~fl~~~~ 271 (271)
T 1wom_A 238 ------------YSSLKQMEARGHCPHMSHP--DETIQLIGDYLKAHV 271 (271)
T ss_dssp ------------SEEEEEEEEESSCHHHHCH--HHHHHHHHHHHHHHC
T ss_pred ------------CCEEEEeCCCCcCccccCH--HHHHHHHHHHHHhcC
Confidence 2588899999998643222 345566788987753
|
| >1xkl_A SABP2, salicylic acid-binding protein 2; alpha-beta protein, structural genomics, protein structure initiative, PSI; HET: STH; 2.00A {Nicotiana tabacum} SCOP: c.69.1.20 PDB: 1y7i_A* 1y7h_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=1.4e-12 Score=132.33 Aligned_cols=215 Identities=14% Similarity=0.117 Sum_probs=127.5
Q ss_pred ccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCccHHHHHHHHHHHHHHcCCCCC
Q 004766 481 HPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQS 560 (732)
Q Consensus 481 ~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~ 560 (732)
.|.||++||.++.. ..|... ...|+++||.|+++|.||.|..... .....+++++.+.+..+++.-- ..
T Consensus 4 ~~~vvllHG~~~~~--~~w~~~-~~~L~~~g~rVia~Dl~G~G~S~~~-------~~~~~~~~~~a~dl~~~l~~l~-~~ 72 (273)
T 1xkl_A 4 GKHFVLVHGACHGG--WSWYKL-KPLLEAAGHKVTALDLAASGTDLRK-------IEELRTLYDYTLPLMELMESLS-AD 72 (273)
T ss_dssp CCEEEEECCTTCCG--GGGTTH-HHHHHHTTCEEEECCCTTSTTCCCC-------GGGCCSHHHHHHHHHHHHHTSC-SS
T ss_pred CCeEEEECCCCCCc--chHHHH-HHHHHhCCCEEEEecCCCCCCCccC-------cccccCHHHHHHHHHHHHHHhc-cC
Confidence 47899999987654 245543 4556558999999999998865321 0112356777766666665411 13
Q ss_pred CcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCccccc---------ccccCCCCCccc----cccCCC----------
Q 004766 561 RKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDML---------RYHKFTIGHAWV----SDFGCS---------- 617 (732)
Q Consensus 561 ~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~---------~~~~~~~~~~~~----~~~g~p---------- 617 (732)
+++.++|+||||+++..++.++|++++++|+..+..... ..........|. ..++.+
T Consensus 73 ~~~~lvGhSmGG~va~~~a~~~P~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (273)
T 1xkl_A 73 EKVILVGHSLGGMNLGLAMEKYPQKIYAAVFLAAFMPDSVHNSSFVLEQYNERTPAENWLDTQFLPYGSPEEPLTSMFFG 152 (273)
T ss_dssp SCEEEEEETTHHHHHHHHHHHCGGGEEEEEEESCCCCCSSSCTTHHHHHHHHTSCTTTTTTCEEEECSCTTSCCEEEECC
T ss_pred CCEEEEecCHHHHHHHHHHHhChHhheEEEEEeccCCCCCCcHHHHHHHhhccCChhhHHHHHHhhccCCCCCccccccC
Confidence 589999999999999999999999999999776532100 000000000010 001100
Q ss_pred -----------CCHHHHHHHHh-cCcccCC-------CCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHh
Q 004766 618 -----------EEEEEFYWLIK-YSPLHNV-------RRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYV 678 (732)
Q Consensus 618 -----------~~~~~~~~~~~-~sp~~~~-------~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~ 678 (732)
..++....... ..|.... ... ........|+|+++|.+|..+|+..+.++++.+..
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~P~l~i~G~~D~~~p~~~~~~~~~~~p~- 227 (273)
T 1xkl_A 153 PKFLAHKLYQLCSPEDLALASSLVRPSSLFMEDLSKAKYF----TDERFGSVKRVYIVCTEDKGIPEEFQRWQIDNIGV- 227 (273)
T ss_dssp HHHHHHHTSTTSCHHHHHHHHHHCCCBCCCHHHHHHCCCC----CTTTGGGSCEEEEEETTCTTTTHHHHHHHHHHHCC-
T ss_pred HHHHHHHhhccCCHHHHHHHHHhcCCCchhhhhhhccccc----chhhhCCCCeEEEEeCCccCCCHHHHHHHHHhCCC-
Confidence 01111111111 0111000 000 00001357999999999999999988887776542
Q ss_pred hcCCCCCCCCCCCEEEEEeCCCCCCCCCchHHHHHHHHHHHHHHHHHh
Q 004766 679 LCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKML 726 (732)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l 726 (732)
.++++++++||....... .+..+.+.+|+.+..
T Consensus 228 -------------~~~~~i~~aGH~~~~e~P--~~~~~~i~~fl~~~~ 260 (273)
T 1xkl_A 228 -------------TEAIEIKGADHMAMLCEP--QKLCASLLEIAHKYN 260 (273)
T ss_dssp -------------SEEEEETTCCSCHHHHSH--HHHHHHHHHHHHHCC
T ss_pred -------------CeEEEeCCCCCCchhcCH--HHHHHHHHHHHHHhc
Confidence 378889999998653332 245567788987754
|
| >2xt0_A Haloalkane dehalogenase; hydrolase, alpha-beta hydrolase fold; 1.90A {Plesiocystis pacifica} | Back alignment and structure |
|---|
Probab=99.45 E-value=7.1e-13 Score=136.29 Aligned_cols=117 Identities=13% Similarity=0.079 Sum_probs=79.9
Q ss_pred eeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCccHH
Q 004766 463 TKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCF 542 (732)
Q Consensus 463 ~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~ 542 (732)
.++.+...-+. ...|.||++||.++... .|.... ..|.++||.|+++|.||.|..... ......++
T Consensus 33 ~~l~y~~~G~~-----~~g~~vvllHG~~~~~~--~w~~~~-~~L~~~g~rvia~Dl~G~G~S~~~------~~~~~~~~ 98 (297)
T 2xt0_A 33 LRMHYVDEGPR-----DAEHTFLCLHGEPSWSF--LYRKML-PVFTAAGGRVVAPDLFGFGRSDKP------TDDAVYTF 98 (297)
T ss_dssp CCEEEEEESCT-----TCSCEEEEECCTTCCGG--GGTTTH-HHHHHTTCEEEEECCTTSTTSCEE------SCGGGCCH
T ss_pred eEEEEEEccCC-----CCCCeEEEECCCCCcce--eHHHHH-HHHHhCCcEEEEeCCCCCCCCCCC------CCcccCCH
Confidence 56766544221 11578999999876543 444433 446658999999999998864321 00012345
Q ss_pred HHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCc
Q 004766 543 DDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGV 595 (732)
Q Consensus 543 ~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~ 595 (732)
+++.+.+..+++. ...+++.++|+|+||.+++.++.++|++++++|+..+.
T Consensus 99 ~~~a~dl~~ll~~--l~~~~~~lvGhS~Gg~va~~~A~~~P~~v~~lvl~~~~ 149 (297)
T 2xt0_A 99 GFHRRSLLAFLDA--LQLERVTLVCQDWGGILGLTLPVDRPQLVDRLIVMNTA 149 (297)
T ss_dssp HHHHHHHHHHHHH--HTCCSEEEEECHHHHHHHTTHHHHCTTSEEEEEEESCC
T ss_pred HHHHHHHHHHHHH--hCCCCEEEEEECchHHHHHHHHHhChHHhcEEEEECCC
Confidence 5555555555443 12368999999999999999999999999999987764
|
| >2wfl_A Polyneuridine-aldehyde esterase; alkaloid metabolism, monoterpenoid indole alkaloids, PNAE, hydrolase, serine esterase; HET: CME; 2.10A {Rauvolfia serpentina} PDB: 2wfm_A 3gzj_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=1.3e-12 Score=131.83 Aligned_cols=105 Identities=14% Similarity=0.207 Sum_probs=75.3
Q ss_pred CCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCccHHHHHHHHHHHHHHc-CC
Q 004766 479 GSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISA-GY 557 (732)
Q Consensus 479 ~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~-~~ 557 (732)
+..|.||++||..++.. .|... ...|.++||.|+++|.||.|.....- ....+++++.+.+..+++. +.
T Consensus 8 ~~g~~vvllHG~~~~~~--~w~~~-~~~L~~~g~~via~Dl~G~G~S~~~~-------~~~~~~~~~a~dl~~~l~~l~~ 77 (264)
T 2wfl_A 8 KQQKHFVLVHGGCLGAW--IWYKL-KPLLESAGHKVTAVDLSAAGINPRRL-------DEIHTFRDYSEPLMEVMASIPP 77 (264)
T ss_dssp -CCCEEEEECCTTCCGG--GGTTH-HHHHHHTTCEEEEECCTTSTTCSCCG-------GGCCSHHHHHHHHHHHHHHSCT
T ss_pred CCCCeEEEECCCccccc--hHHHH-HHHHHhCCCEEEEeecCCCCCCCCCc-------ccccCHHHHHHHHHHHHHHhCC
Confidence 45688999999876542 45543 45565589999999999988653210 1123566666665555544 21
Q ss_pred CCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCc
Q 004766 558 TQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGV 595 (732)
Q Consensus 558 ~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~ 595 (732)
.+++.++||||||+++..++.++|++++++|+..+.
T Consensus 78 --~~~~~lvGhSmGG~va~~~a~~~p~~v~~lvl~~~~ 113 (264)
T 2wfl_A 78 --DEKVVLLGHSFGGMSLGLAMETYPEKISVAVFMSAM 113 (264)
T ss_dssp --TCCEEEEEETTHHHHHHHHHHHCGGGEEEEEEESSC
T ss_pred --CCCeEEEEeChHHHHHHHHHHhChhhhceeEEEeec
Confidence 258999999999999999999999999999877653
|
| >1b6g_A Haloalkane dehalogenase; hydrolase, alpha/beta-hydrolase; 1.15A {Xanthobacter autotrophicus} SCOP: c.69.1.8 PDB: 1be0_A 1cij_A 2yxp_X 1edd_A 1edb_A 2dhc_A 2dhe_A 2eda_A 2edc_A 2had_A 1ede_A 2pky_X 1bez_A 1bee_A 2dhd_A* 1hde_A | Back alignment and structure |
|---|
Probab=99.45 E-value=4.8e-13 Score=138.51 Aligned_cols=117 Identities=14% Similarity=0.077 Sum_probs=80.3
Q ss_pred eeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCccHH
Q 004766 463 TKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCF 542 (732)
Q Consensus 463 ~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~ 542 (732)
.++.+...-+. +..|.||++||.++... .|... ...|+++||.|+++|.||.|..... ......++
T Consensus 34 ~~l~y~~~G~~-----~~g~~vvllHG~~~~~~--~w~~~-~~~L~~~g~rvia~Dl~G~G~S~~~------~~~~~y~~ 99 (310)
T 1b6g_A 34 LRAHYLDEGNS-----DAEDVFLCLHGEPTWSY--LYRKM-IPVFAESGARVIAPDFFGFGKSDKP------VDEEDYTF 99 (310)
T ss_dssp CEEEEEEEECT-----TCSCEEEECCCTTCCGG--GGTTT-HHHHHHTTCEEEEECCTTSTTSCEE------SCGGGCCH
T ss_pred eEEEEEEeCCC-----CCCCEEEEECCCCCchh--hHHHH-HHHHHhCCCeEEEeCCCCCCCCCCC------CCcCCcCH
Confidence 56766544321 11578999999877643 44443 3456658999999999998864321 00112345
Q ss_pred HHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCc
Q 004766 543 DDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGV 595 (732)
Q Consensus 543 ~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~ 595 (732)
+++.+.+..|++. ...+++.++|+|+||.++..++.++|++++++|+..+.
T Consensus 100 ~~~a~dl~~ll~~--l~~~~~~lvGhS~Gg~va~~~A~~~P~rv~~Lvl~~~~ 150 (310)
T 1b6g_A 100 EFHRNFLLALIER--LDLRNITLVVQDWGGFLGLTLPMADPSRFKRLIIMNAX 150 (310)
T ss_dssp HHHHHHHHHHHHH--HTCCSEEEEECTHHHHHHTTSGGGSGGGEEEEEEESCC
T ss_pred HHHHHHHHHHHHH--cCCCCEEEEEcChHHHHHHHHHHhChHhheEEEEeccc
Confidence 6666555555443 12358999999999999999999999999999887653
|
| >2qmq_A Protein NDRG2, protein NDR2; alpha/beta-hydrolases fold, NDR family, developmental protei differentiation, neurogenesis, phosphorylation; HET: 2PE; 1.70A {Mus musculus} PDB: 2xmq_A 2xmr_A 2xms_A | Back alignment and structure |
|---|
Probab=99.45 E-value=2e-13 Score=139.40 Aligned_cols=125 Identities=10% Similarity=0.002 Sum_probs=83.3
Q ss_pred CCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCC---CCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhccccc
Q 004766 460 DGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVT---PSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALA 536 (732)
Q Consensus 460 dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~---~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~ 536 (732)
+| .+|.+...-+. +...|+||++||..+.... +.|.......|+ ++|.|+++|+||.|....... ..
T Consensus 19 ~~-~~l~y~~~G~~----~~~~p~vvllHG~~~~~~~~~~~~~~~~~~~~L~-~~~~vi~~D~~G~G~s~~~~~----~~ 88 (286)
T 2qmq_A 19 PY-GSVTFTVYGTP----KPKRPAIFTYHDVGLNYKSCFQPLFRFGDMQEII-QNFVRVHVDAPGMEEGAPVFP----LG 88 (286)
T ss_dssp TT-EEEEEEEESCC----CTTCCEEEEECCTTCCHHHHHHHHHTSHHHHHHH-TTSCEEEEECTTTSTTCCCCC----TT
T ss_pred CC-eEEEEEeccCC----CCCCCeEEEeCCCCCCchhhhhhhhhhchhHHHh-cCCCEEEecCCCCCCCCCCCC----CC
Confidence 67 78877655332 1256899999998766421 012211446677 689999999999764211100 00
Q ss_pred CCccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCcc
Q 004766 537 KKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVM 596 (732)
Q Consensus 537 ~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~ 596 (732)
....+++++.+.+..+++. .+.+++.++|+|+||++++.++.++|++++++|+..|..
T Consensus 89 ~~~~~~~~~~~~l~~~l~~--l~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 146 (286)
T 2qmq_A 89 YQYPSLDQLADMIPCILQY--LNFSTIIGVGVGAGAYILSRYALNHPDTVEGLVLINIDP 146 (286)
T ss_dssp CCCCCHHHHHHTHHHHHHH--HTCCCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCC
T ss_pred CCccCHHHHHHHHHHHHHH--hCCCcEEEEEEChHHHHHHHHHHhChhheeeEEEECCCC
Confidence 0012556666655555443 233589999999999999999999999999999988855
|
| >3afi_E Haloalkane dehalogenase; A/B-hydrolase, hydrolase; 1.75A {Bradyrhizobium japonicum} PDB: 3a2m_A* 3a2n_A 3a2l_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=1.8e-12 Score=134.54 Aligned_cols=115 Identities=16% Similarity=0.079 Sum_probs=83.2
Q ss_pred cCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCC
Q 004766 459 KDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKK 538 (732)
Q Consensus 459 ~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~ 538 (732)
.+| .++.+...- .++.|.||++||.+++.. .|... ...|+ .+|.|+++|.||.|.... ...
T Consensus 14 ~~g-~~l~y~~~G------~g~~~pvvllHG~~~~~~--~w~~~-~~~L~-~~~~via~Dl~G~G~S~~--------~~~ 74 (316)
T 3afi_E 14 VLG-SSMAYRETG------AQDAPVVLFLHGNPTSSH--IWRNI-LPLVS-PVAHCIAPDLIGFGQSGK--------PDI 74 (316)
T ss_dssp ETT-EEEEEEEES------CTTSCEEEEECCTTCCGG--GGTTT-HHHHT-TTSEEEEECCTTSTTSCC--------CSS
T ss_pred eCC-EEEEEEEeC------CCCCCeEEEECCCCCchH--HHHHH-HHHHh-hCCEEEEECCCCCCCCCC--------CCC
Confidence 378 787665431 133358999999887653 34443 35566 569999999999886532 112
Q ss_pred ccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCC
Q 004766 539 QNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVG 594 (732)
Q Consensus 539 ~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p 594 (732)
..+++++.+.+..+++. ...+++.++|+|+||.+++.++.++|++++++|+..+
T Consensus 75 ~~~~~~~a~dl~~ll~~--l~~~~~~lvGhS~Gg~va~~~A~~~P~~v~~lvl~~~ 128 (316)
T 3afi_E 75 AYRFFDHVRYLDAFIEQ--RGVTSAYLVAQDWGTALAFHLAARRPDFVRGLAFMEF 128 (316)
T ss_dssp CCCHHHHHHHHHHHHHH--TTCCSEEEEEEEHHHHHHHHHHHHCTTTEEEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHH--cCCCCEEEEEeCccHHHHHHHHHHCHHhhhheeeecc
Confidence 34567777776666654 2336899999999999999999999999999987764
|
| >3fla_A RIFR; alpha-beta hydrolase thioesterase, hydrolase; HET: MSE; 1.80A {Amycolatopsis mediterranei} PDB: 3flb_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=4.8e-13 Score=134.66 Aligned_cols=208 Identities=13% Similarity=0.023 Sum_probs=125.4
Q ss_pred CCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCccHHHHHHHHHHHHHHcCC
Q 004766 478 DGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGY 557 (732)
Q Consensus 478 ~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~ 557 (732)
.+..|+||++||+.+.. ..|. .+...|+ .+|.|+++|+||.|... ......+++++.+.+..+++.
T Consensus 17 ~~~~~~vv~~HG~~~~~--~~~~-~~~~~l~-~~~~v~~~d~~G~G~s~--------~~~~~~~~~~~~~~~~~~l~~-- 82 (267)
T 3fla_A 17 PDARARLVCLPHAGGSA--SFFF-PLAKALA-PAVEVLAVQYPGRQDRR--------HEPPVDSIGGLTNRLLEVLRP-- 82 (267)
T ss_dssp TTCSEEEEEECCTTCCG--GGGH-HHHHHHT-TTEEEEEECCTTSGGGT--------TSCCCCSHHHHHHHHHHHTGG--
T ss_pred CCCCceEEEeCCCCCCc--hhHH-HHHHHhc-cCcEEEEecCCCCCCCC--------CCCCCcCHHHHHHHHHHHHHh--
Confidence 35679999999987653 2333 3456677 67999999999976421 112233566666666655554
Q ss_pred CCCCcEEEEecChhHHHHHHHHhhCCCe----eeEEEEcCCcccccccccCCCC---Ccc---ccccCC-C----CCHH-
Q 004766 558 TQSRKLCIEGGSNGGLLVGACINQRPDL----FGCALAHVGVMDMLRYHKFTIG---HAW---VSDFGC-S----EEEE- 621 (732)
Q Consensus 558 ~d~~~i~i~G~S~GG~l~~~~~~~~p~~----f~a~v~~~p~~d~~~~~~~~~~---~~~---~~~~g~-p----~~~~- 621 (732)
.+.+++.++|+|+||++++.++.++|++ ++++|+..+............. ..+ ...++. + .+++
T Consensus 83 ~~~~~~~lvG~S~Gg~ia~~~a~~~~~~~~~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (267)
T 3fla_A 83 FGDRPLALFGHSMGAIIGYELALRMPEAGLPAPVHLFASGRRAPSRYRDDDVRGASDERLVAELRKLGGSDAAMLADPEL 162 (267)
T ss_dssp GTTSCEEEEEETHHHHHHHHHHHHTTTTTCCCCSEEEEESCCCTTCCCCSCTTCCCHHHHHHHHHHTCHHHHHHHHSHHH
T ss_pred cCCCceEEEEeChhHHHHHHHHHhhhhhccccccEEEECCCCccccccchhhcccchHHHHHHHHHhcCcchhhccCHHH
Confidence 2457899999999999999999999986 7888776654322111000000 000 001110 0 0111
Q ss_pred ----------HHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhcCCCCCCCCCCC
Q 004766 622 ----------EFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNP 691 (732)
Q Consensus 622 ----------~~~~~~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 691 (732)
.+..+..+.+... . .+..|+|+++|.+|..||+..+.++.+.+ ..+
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~--~---------~~~~P~l~i~g~~D~~~~~~~~~~~~~~~-------------~~~ 218 (267)
T 3fla_A 163 LAMVLPAIRSDYRAVETYRHEPG--R---------RVDCPVTVFTGDHDPRVSVGEARAWEEHT-------------TGP 218 (267)
T ss_dssp HHHHHHHHHHHHHHHHHCCCCTT--C---------CBSSCEEEEEETTCTTCCHHHHHGGGGGB-------------SSC
T ss_pred HHHHHHHHHHHHHhhhccccccc--C---------cCCCCEEEEecCCCCCCCHHHHHHHHHhc-------------CCC
Confidence 1112222322211 1 37889999999999999987776655433 235
Q ss_pred EEEEEeCCCCCCCCCchHHHHHHHHHHHHHHHHHh
Q 004766 692 IIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKML 726 (732)
Q Consensus 692 ~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l 726 (732)
+.++++++ ||...... ..+....+.+||.+..
T Consensus 219 ~~~~~~~g-gH~~~~~~--~~~~~~~i~~fl~~~~ 250 (267)
T 3fla_A 219 ADLRVLPG-GHFFLVDQ--AAPMIATMTEKLAGPA 250 (267)
T ss_dssp EEEEEESS-STTHHHHT--HHHHHHHHHHHTC---
T ss_pred ceEEEecC-CceeeccC--HHHHHHHHHHHhcccc
Confidence 79999998 99865322 2345556777876653
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=2.3e-10 Score=119.98 Aligned_cols=227 Identities=8% Similarity=0.035 Sum_probs=144.0
Q ss_pred EeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceeccc-ccce---------eeeeEEEEeCCcEEEEEEecCCCCCC
Q 004766 135 IKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADA-LSWF---------KFSSIAWTHDSKGFFYSRYPAPKEGK 204 (732)
Q Consensus 135 ~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~-~~~~---------~~~~~~WspDg~~l~y~~~~~~~~~~ 204 (732)
..+.|||||++++++.... ..|+++|+++++.+... .... ...+++|+|||+.++++...
T Consensus 92 ~~~~~s~dg~~l~v~~~~~----~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~------ 161 (353)
T 3vgz_A 92 FGATINNTTQTLWFGNTVN----SAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIG------ 161 (353)
T ss_dssp CSEEEETTTTEEEEEETTT----TEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEES------
T ss_pred ceEEECCCCCEEEEEecCC----CEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecC------
Confidence 3688999999887665322 27999999999854321 1110 13568999999998877521
Q ss_pred CCCCCCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcc
Q 004766 205 DMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLE 284 (732)
Q Consensus 205 ~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~ 284 (732)
....|+++++.++... ..+.... .....+.|||||++|++... ...++++|+.++..
T Consensus 162 -----------~~~~i~~~d~~~~~~~--~~~~~~~--~~~~~~~~s~dg~~l~~~~~-----~~~i~~~d~~~~~~--- 218 (353)
T 3vgz_A 162 -----------KESVIWVVDGGNIKLK--TAIQNTG--KMSTGLALDSEGKRLYTTNA-----DGELITIDTADNKI--- 218 (353)
T ss_dssp -----------SSCEEEEEETTTTEEE--EEECCCC--TTCCCCEEETTTTEEEEECT-----TSEEEEEETTTTEE---
T ss_pred -----------CCceEEEEcCCCCceE--EEecCCC--CccceEEECCCCCEEEEEcC-----CCeEEEEECCCCeE---
Confidence 2346999998765321 1222111 12346889999999877642 24688999887420
Q ss_pred cccccCCCCCcEEeeec---ccceE--EEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEec
Q 004766 285 GFKKRDGLLPFVKLIDG---FDAQY--EVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVN 359 (732)
Q Consensus 285 ~~~~~~~~~~~~~l~~~---~~~~~--~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~ 359 (732)
...+..+ ..... ..|+|||+.+|+.... ...|+.+|+.+++... .++.. .. ..+.+++
T Consensus 219 ----------~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~---~~~v~~~d~~~~~~~~-~~~~~--~~-~~~~~s~ 281 (353)
T 3vgz_A 219 ----------LSRKKLLDDGKEHFFINISLDTARQRAFITDSK---AAEVLVVDTRNGNILA-KVAAP--ES-LAVLFNP 281 (353)
T ss_dssp ----------EEEEECCCSSSCCCEEEEEEETTTTEEEEEESS---SSEEEEEETTTCCEEE-EEECS--SC-CCEEEET
T ss_pred ----------EEEEEcCCCCCCcccceEEECCCCCEEEEEeCC---CCEEEEEECCCCcEEE-EEEcC--CC-ceEEECC
Confidence 1111111 11111 2589999988765432 3579999998876322 23322 11 3577777
Q ss_pred CC-EEEEEEecCCeeEEEEEeCCCCceeeecccccceeeEeecccCCcEEEEEEec
Q 004766 360 LN-QMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTS 414 (732)
Q Consensus 360 ~~-~l~~~~~~~g~~~l~~~d~~~g~~~~~l~~~~g~v~~~~~s~d~~~l~~~~ss 414 (732)
++ .+++....+ ..|.+||+.+++.+..+..+. ....+.+++|++.++++..+
T Consensus 282 dg~~l~v~~~~~--~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 282 ARNEAYVTHRQA--GKVSVIDAKSYKVVKTFDTPT-HPNSLALSADGKTLYVSVKQ 334 (353)
T ss_dssp TTTEEEEEETTT--TEEEEEETTTTEEEEEEECCS-EEEEEEECTTSCEEEEEEEC
T ss_pred CCCEEEEEECCC--CeEEEEECCCCeEEEEEecCC-CCCeEEEcCCCCEEEEEEcc
Confidence 54 466665444 479999998888766665443 45677889999988888766
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=2e-11 Score=147.92 Aligned_cols=264 Identities=8% Similarity=0.069 Sum_probs=169.8
Q ss_pred CCCCcEEeCCEEEEEEEcCCCCeeEEEEEeCCCCCceEEeCCCCcCCCCCEEEEeEEECCCCcEEEEEEeccCCceEEEE
Q 004766 82 RYDAPFKRGNKYFYFHNTGLQPQSVLYVQDSLDAKAKVLLDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSGSDWATIK 161 (732)
Q Consensus 82 ~~~~p~~~g~~~~~~~~~~~~~~~~l~~r~~~~~~~~~l~D~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~ 161 (732)
....|.+.+++++|.....+ ...||..+..++..+.+...... ..+.|||||++|||.. . .+|+
T Consensus 205 ~v~~~~~s~d~l~~~~~~dg--~~~l~~~~~~g~~~~~l~~~~~~--------~~~~~SpDG~~la~~~--~----~~i~ 268 (1045)
T 1k32_A 205 HVSSPVIVGHRIYFITDIDG--FGQIYSTDLDGKDLRKHTSFTDY--------YPRHLNTDGRRILFSK--G----GSIY 268 (1045)
T ss_dssp CCEEEEEETTEEEEEECTTS--SCEEEEEETTSCSCEECCCCCSS--------CEEEEEESSSCEEEEE--T----TEEE
T ss_pred cccceEEeCCEEEEEEeccC--ceEEEEEeCCCCcceEecCCCCc--------ceeeEcCCCCEEEEEe--C----CEEE
Confidence 34455666777777754332 34588877544444555443322 2568999999999984 2 3799
Q ss_pred EEECCCCceeccccc-----------ceeeeeEEEE-eCCcEEEEEEecCCCCCCCCCCCCcccCCcccEEEEEECCCCC
Q 004766 162 LMRIEDQIVEADALS-----------WFKFSSIAWT-HDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQ 229 (732)
Q Consensus 162 v~dl~~g~~~~~~~~-----------~~~~~~~~Ws-pDg~~l~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~ 229 (732)
++|++++........ ......++|| |||+.|++... ..|+.+++.++.
T Consensus 269 ~~d~~~~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~~--------------------~~i~~~~~~~~~ 328 (1045)
T 1k32_A 269 IFNPDTEKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVSR--------------------GQAFIQDVSGTY 328 (1045)
T ss_dssp EECTTTCCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEET--------------------TEEEEECTTSSB
T ss_pred EecCCceEeeeeccCcccccccccccccccceeeecCCCCCEEEEEEc--------------------CEEEEEcCCCCc
Confidence 999965543311110 0024689999 99999999851 258888876543
Q ss_pred CCCeEEEecCCCCe-eEEEeEEecCCcEEEEEEecCCcceEEEE-EEeCCCCCCCcccccccCCCCCcEEeeec-ccceE
Q 004766 230 SEDILCWKDPEHPK-YIFSGHVTEDGQYLVMCIEENCDPVNKVY-YCDLSALPEGLEGFKKRDGLLPFVKLIDG-FDAQY 306 (732)
Q Consensus 230 ~~~~~v~~~~~~~~-~~~~~~~SpDg~~l~~~~~~~~~~~~~l~-~~d~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~ 306 (732)
.. . ...... ....+.|| ||+.|++.+. ...+| ++++.++. ...+... .....
T Consensus 329 ~~--~---~~~~~~~~~~~~~~s-dg~~l~~~s~-----~~~l~~~~d~~~~~--------------~~~l~~~~~~~~~ 383 (1045)
T 1k32_A 329 VL--K---VPEPLRIRYVRRGGD-TKVAFIHGTR-----EGDFLGIYDYRTGK--------------AEKFEENLGNVFA 383 (1045)
T ss_dssp EE--E---CSCCSCEEEEEECSS-SEEEEEEEET-----TEEEEEEEETTTCC--------------EEECCCCCCSEEE
T ss_pred eE--E---ccCCCcceEEeeeEc-CCCeEEEEEC-----CCceEEEEECCCCC--------------ceEecCCccceee
Confidence 11 1 122223 45688999 9999988764 35799 99987642 2333321 11123
Q ss_pred EEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecCCE-EEEEEecC-------CeeEEEEE
Q 004766 307 EVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQ-MIVSYLSD-------VKYVLQIR 378 (732)
Q Consensus 307 ~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~~-l~~~~~~~-------g~~~l~~~ 378 (732)
..|+|||+.|++.+++ ..|+++|++++. ...++... ...+..+.|++|+. |++..... ....|++|
T Consensus 384 ~~~SpDG~~la~~~~~----~~v~~~d~~tg~-~~~~~~~~-~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~ 457 (1045)
T 1k32_A 384 MGVDRNGKFAVVANDR----FEIMTVDLETGK-PTVIERSR-EAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVY 457 (1045)
T ss_dssp EEECTTSSEEEEEETT----SEEEEEETTTCC-EEEEEECS-SSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEE
T ss_pred eEECCCCCEEEEECCC----CeEEEEECCCCc-eEEeccCC-CCCccceEECCCCCeEEEEecCccccccCCCCCeEEEE
Confidence 3599999999987654 379999999887 45555322 24567889998755 54444432 34689999
Q ss_pred eCCCCceeeecccccceeeEeecccCCcEEEEEEe
Q 004766 379 DLKNGSLLHQLPIEIGSVNAISARREDSVVFISFT 413 (732)
Q Consensus 379 d~~~g~~~~~l~~~~g~v~~~~~s~d~~~l~~~~s 413 (732)
|+++|+ ...++.+...+..+.+++||+.+++...
T Consensus 458 d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~ 491 (1045)
T 1k32_A 458 DMEGRK-IFAATTENSHDYAPAFDADSKNLYYLSY 491 (1045)
T ss_dssp ETTTTE-EEECSCSSSBEEEEEECTTSCEEEEEES
T ss_pred ECCCCc-EEEeeCCCcccCCceEcCCCCEEEEEec
Confidence 998776 3666655445566788999998876554
|
| >4fol_A FGH, S-formylglutathione hydrolase; D-type esterase, oxidation sensor motif, esterase activity activation, esterase activity inhibition; 2.07A {Saccharomyces cerevisiae} PDB: 1pv1_A 3c6b_A* 4flm_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=4.4e-13 Score=136.51 Aligned_cols=251 Identities=12% Similarity=0.055 Sum_probs=148.2
Q ss_pred eEEEEEEEcc-CCCeeEEEEEEEcCCCC-----CCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEccc---
Q 004766 450 HVHQVFVPSK-DGSTKIPMFIVSKKNIK-----LDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIR--- 520 (732)
Q Consensus 450 ~~~~~~~~s~-dG~~~i~~~~~~p~~~~-----~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~r--- 520 (732)
...++++.|. -| .++.+.++.|+++. .++++|+|.++||..+....+.-......++++.|.++++++..
T Consensus 13 ~~~~~~~~S~~l~-~~~~~~VyLPp~y~~~~~~~~~~~PVLYlLhG~~~~~~~w~~~~~~~~~~~~~~~~~v~p~~~p~~ 91 (299)
T 4fol_A 13 RLIKLSHNSNSTK-TSMNVNIYLPKHYYAQDFPRNKRIPTVFYLSGLTCTPDNASEKAFWQFQADKYGFAIVFPDTSPRG 91 (299)
T ss_dssp EEEEEEEECTTTS-SEEEEEEEECGGGGCC------CBCEEEEECCTTCCHHHHHHHSCHHHHHHHHTCEEEEECSSCCS
T ss_pred EEEEEEEECcccC-CceEEEEEcCCCCCccccccCCCcCEEEEECCCCCChHHHHHhchHhHHHHHcCchhhccCCCcce
Confidence 5566777764 67 89999999998763 35689999999998765332222223456777789999998752
Q ss_pred ----CCC--C----CchhHHhccccc--CCccHH-----HHHHHHHHHHH----HcCCCCCCcEEEEecChhHHHHHHHH
Q 004766 521 ----GGG--E----YGEEWHKGGALA--KKQNCF-----DDFISASEYLI----SAGYTQSRKLCIEGGSNGGLLVGACI 579 (732)
Q Consensus 521 ----G~g--~----~g~~~~~~~~~~--~~~~~~-----~D~~~~~~~l~----~~~~~d~~~i~i~G~S~GG~l~~~~~ 579 (732)
++. . .+..|+...... .+...+ ++++..++.-. ++...+.++.+|.|+||||+-++.++
T Consensus 92 ~~~~~~~~~~~~~g~~~~~y~d~~~~p~~~~~~~~~~l~~EL~~~i~~~f~~~~~r~~~~r~~~~i~G~SMGG~gAl~~a 171 (299)
T 4fol_A 92 DEVANDPEGSWDFGQGAGFYLNATQEPYAQHYQMYDYIHKELPQTLDSHFNKNGDVKLDFLDNVAITGISMGGYGAICGY 171 (299)
T ss_dssp TTSCCCTTCCSSSBTTBCTTCBCCSHHHHTTCBHHHHHHTHHHHHHHHHHCC-----BCSSSSEEEEEBTHHHHHHHHHH
T ss_pred eecCCCcccccccccCCccccccccCccccCccHHHHHHHHhHHHHHHhcccccccccccccceEEEecCchHHHHHHHH
Confidence 110 0 011111111000 011112 33444433221 12335668899999999999999988
Q ss_pred hhC--CCeeeEEEEcCCcccccccccCCCCCccccccCCCCCHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEee
Q 004766 580 NQR--PDLFGCALAHVGVMDMLRYHKFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTA 657 (732)
Q Consensus 580 ~~~--p~~f~a~v~~~p~~d~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g 657 (732)
.++ |+.|+++.+.+|..+........ ..+...+|... . ...+++|...+++... ...+++||-+|
T Consensus 172 l~~~~~~~~~~~~s~s~~~~p~~~~~~~--~~~~~~~g~~~--~---~~~~~d~~~l~~~~~~------~~~~~i~id~G 238 (299)
T 4fol_A 172 LKGYSGKRYKSCSAFAPIVNPSNVPWGQ--KAFKGYLGEEK--A---QWEAYDPCLLIKNIRH------VGDDRILIHVG 238 (299)
T ss_dssp HHTGGGTCCSEEEEESCCCCGGGSHHHH--HHHHHHTC----------CGGGCHHHHGGGSCC------CTTCCEEEEEE
T ss_pred HhCCCCCceEEEEecccccCcccccccc--cccccccccch--h---hhhhcCHHHHHHhccc------CCCCceEEEec
Confidence 874 78999999999988764321100 00011223221 0 1133444433322100 13578999999
Q ss_pred CCCCCCCch-HHHHHHHHHHHhhcCCCCCCCCCCC--EEEEEeCCCCCCCCCchHHHHHHHHHHHHHHHHHhCC
Q 004766 658 DHDDRVVPL-HSLKLLATMQYVLCTSLENSPQTNP--IIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLGA 728 (732)
Q Consensus 658 ~~D~~v~~~-~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~ 728 (732)
.+|....-. .+.+|.++++++ |.+ +.++..+|.+|...- ......+.+.|..++||+
T Consensus 239 ~~D~f~~~~l~~~~f~~a~~~~----------g~~~~~~~r~~~GydHsy~f----~~~fi~dhl~fha~~Lgl 298 (299)
T 4fol_A 239 DSDPFLEEHLKPELLLEAVKAT----------SWQDYVEIKKVHGFDHSYYF----VSTFVPEHAEFHARNLGL 298 (299)
T ss_dssp TTCTTHHHHTCTHHHHHHHTTS----------TTTTCEEEEEETTCCSSHHH----HHHHHHHHHHHHHHHTTC
T ss_pred CCCcchhhhcCHHHHHHHHHhc----------CCCceEEEEeCCCCCCCHHH----HHHHHHHHHHHHHHhcCC
Confidence 999765321 246788888776 655 789999988996421 235566788999999986
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=99.43 E-value=1.5e-10 Score=119.24 Aligned_cols=241 Identities=11% Similarity=0.091 Sum_probs=155.5
Q ss_pred EEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceeccc-ccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCc
Q 004766 133 ALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADA-LSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTE 211 (732)
Q Consensus 133 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~-~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~ 211 (732)
.+..++|||||++||-... ..+|++||++++..+... .........+|+||++.|+....+
T Consensus 15 ~V~~~~fsp~~~~l~s~~~-----dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d------------- 76 (304)
T 2ynn_A 15 RVKGIDFHPTEPWVLTTLY-----SGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDD------------- 76 (304)
T ss_dssp CEEEEEECSSSSEEEEEET-----TSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETT-------------
T ss_pred ceEEEEECCCCCEEEEEcC-----CCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCC-------------
Confidence 3678999999999886532 248999999998754321 111224678999999988877533
Q ss_pred ccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCC
Q 004766 212 TDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDG 291 (732)
Q Consensus 212 ~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 291 (732)
..|.+|++.++.. +..+.. +...+..++|+|++++|+..+.++ .|.++|+.++.
T Consensus 77 ------~~i~vwd~~~~~~--~~~~~~--h~~~v~~~~~~~~~~~l~sgs~D~-----~v~lWd~~~~~----------- 130 (304)
T 2ynn_A 77 ------FRIRVFNYNTGEK--VVDFEA--HPDYIRSIAVHPTKPYVLSGSDDL-----TVKLWNWENNW----------- 130 (304)
T ss_dssp ------SEEEEEETTTCCE--EEEEEC--CSSCEEEEEECSSSSEEEEEETTS-----CEEEEEGGGTT-----------
T ss_pred ------CEEEEEECCCCcE--EEEEeC--CCCcEEEEEEcCCCCEEEEECCCC-----eEEEEECCCCc-----------
Confidence 3689999987642 223332 344567899999999987655433 37778887631
Q ss_pred CCCcEEeeecccceE--EEEEec-CCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEec--CCEEEEE
Q 004766 292 LLPFVKLIDGFDAQY--EVIAND-DTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVN--LNQMIVS 366 (732)
Q Consensus 292 ~~~~~~l~~~~~~~~--~~~s~d-g~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~--~~~l~~~ 366 (732)
.......+....+ ..|+|+ +..|+. ... ...|..+|+.+......+.... ...+..+.+.+ ++.++++
T Consensus 131 --~~~~~~~~h~~~v~~v~~~p~~~~~l~s-gs~---D~~v~iwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~l~s 203 (304)
T 2ynn_A 131 --ALEQTFEGHEHFVMCVAFNPKDPSTFAS-GCL---DRTVKVWSLGQSTPNFTLTTGQ-ERGVNYVDYYPLPDKPYMIT 203 (304)
T ss_dssp --EEEEEECCCCSCEEEEEECTTCTTEEEE-EET---TSEEEEEETTCSSCSEEEECCC-TTCEEEEEECCSTTCCEEEE
T ss_pred --chhhhhcccCCcEEEEEECCCCCCEEEE-EeC---CCeEEEEECCCCCccceeccCC-cCcEEEEEEEEcCCCCEEEE
Confidence 1122222222222 247884 555553 332 3468888987665333343322 24456666654 4567777
Q ss_pred EecCCeeEEEEEeCCCCceeeecccccceeeEeecccCCcEEEEEEecCCCCceEEEEECCCCC
Q 004766 367 YLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 430 (732)
Q Consensus 367 ~~~~g~~~l~~~d~~~g~~~~~l~~~~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~~ 430 (732)
...++ .|.+||+.+++.+..+..+...+..+.++|+++.++ +.+. -..+..+|+.+++
T Consensus 204 ~s~D~--~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~-s~s~---Dg~i~iWd~~~~~ 261 (304)
T 2ynn_A 204 ASDDL--TIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIII-SGSE---DGTLKIWNSSTYK 261 (304)
T ss_dssp EETTS--EEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEE-EEET---TSCEEEEETTTCC
T ss_pred EcCCC--eEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEE-EEcC---CCeEEEEECCCCc
Confidence 77774 799999988877677766667787888899988543 4433 2568889988775
|
| >3pic_A CIP2; alpha/beta hydrolase fold, glucuronoyl esterase, carbohydrat esterase family 15 (CE-15), N-linked glycosylation, secrete hydrolase; HET: NAG; 1.90A {Hypocrea jecorina} | Back alignment and structure |
|---|
Probab=99.43 E-value=1e-11 Score=126.47 Aligned_cols=117 Identities=13% Similarity=0.030 Sum_probs=90.5
Q ss_pred eeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcc--------cCCCCCchhHHhc-c
Q 004766 463 TKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANI--------RGGGEYGEEWHKG-G 533 (732)
Q Consensus 463 ~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~--------rG~g~~g~~~~~~-~ 533 (732)
..+++.|+.|++. .++.|+||.+||+. +. +. +||+++.+|. ||+.++|. |++. +
T Consensus 90 ~~~~~~i~lP~~~--~~p~Pvii~i~~~~-------~~------~~-~G~a~~~~~~~~v~~~~~~gs~g~g~-f~~ly~ 152 (375)
T 3pic_A 90 ISFTVTITYPSSG--TAPYPAIIGYGGGS-------LP------AP-AGVAMINFNNDNIAAQVNTGSRGQGK-FYDLYG 152 (375)
T ss_dssp EEEEEEEECCSSS--CSSEEEEEEETTCS-------SC------CC-TTCEEEEECHHHHSCCSSGGGTTCSH-HHHHHC
T ss_pred eEEEEEEECCCCC--CCCccEEEEECCCc-------cc------cC-CCeEEEEecccccccccCCCCcccee-cccccC
Confidence 5688999999864 37899999998841 11 33 8999999987 66667777 4422 2
Q ss_pred -cccCCccH--HHHHHHHHHHHHHcC--CCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCccc
Q 004766 534 -ALAKKQNC--FDDFISASEYLISAG--YTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMD 597 (732)
Q Consensus 534 -~~~~~~~~--~~D~~~~~~~l~~~~--~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d 597 (732)
...++.-. .-|+..+++||..+. .+|++||+|+|+|+||..++++++.. ++|+++|+.+|..+
T Consensus 153 ~~~~~gal~awaWg~~raid~L~~~~~~~VD~~RIgv~G~S~gG~~al~~aA~D-~Ri~~~v~~~~g~~ 220 (375)
T 3pic_A 153 SSHSAGAMTAWAWGVSRVIDALELVPGARIDTTKIGVTGCSRNGKGAMVAGAFE-KRIVLTLPQESGAG 220 (375)
T ss_dssp TTCSCCHHHHHHHHHHHHHHHHHHCGGGCEEEEEEEEEEETHHHHHHHHHHHHC-TTEEEEEEESCCTT
T ss_pred CccchHHHHHHHHHHHHHHHHHHhCCccCcChhhEEEEEeCCccHHHHHHHhcC-CceEEEEeccCCCC
Confidence 12222222 258999999999998 89999999999999999999999985 58999999987653
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.42 E-value=2.9e-11 Score=126.90 Aligned_cols=239 Identities=9% Similarity=-0.002 Sum_probs=153.4
Q ss_pred EEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecc---c--ccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCC
Q 004766 134 LIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEAD---A--LSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDA 208 (732)
Q Consensus 134 ~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~---~--~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~ 208 (732)
+..++||||++ |+... .+ .+|+|||+++++.+.. . .....+..++|+|||+.|+....+.
T Consensus 85 v~~~~~s~d~~-l~~~s-~d----g~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~--------- 149 (344)
T 4gqb_B 85 VADLTWVGERG-ILVAS-DS----GAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDI--------- 149 (344)
T ss_dssp EEEEEEETTTE-EEEEE-TT----SEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTS---------
T ss_pred EEEEEEeCCCe-EEEEE-CC----CEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCC---------
Confidence 67899999975 44332 22 4799999999874321 1 1112357899999999988775432
Q ss_pred CCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccc
Q 004766 209 GTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKK 288 (732)
Q Consensus 209 ~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~ 288 (732)
.|.+|++.++. ++.....+...+..+.|+|+++.++++.+.. ..|.++|+.++.
T Consensus 150 ----------~i~iwd~~~~~----~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D----~~v~iwd~~~~~-------- 203 (344)
T 4gqb_B 150 ----------CIKVWDLAQQV----VLSSYRAHAAQVTCVAASPHKDSVFLSCSED----NRILLWDTRCPK-------- 203 (344)
T ss_dssp ----------CEEEEETTTTE----EEEEECCCSSCEEEEEECSSCTTEEEEEETT----SCEEEEETTSSS--------
T ss_pred ----------eEEEEECCCCc----EEEEEcCcCCceEEEEecCCCCCceeeeccc----cccccccccccc--------
Confidence 58899987653 2322223344567899999998766655432 237788987743
Q ss_pred cCCCCCcEEeeecc---cceEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecCC-EEE
Q 004766 289 RDGLLPFVKLIDGF---DAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLN-QMI 364 (732)
Q Consensus 289 ~~~~~~~~~l~~~~---~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~-~l~ 364 (732)
+...+.... ......|+|++..+++.... +..|..+|+.+++....+..+. ..+..+.+++++ .++
T Consensus 204 -----~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~---dg~v~~wd~~~~~~~~~~~~h~--~~v~~v~fsp~g~~~l 273 (344)
T 4gqb_B 204 -----PASQIGCSAPGYLPTSLAWHPQQSEVFVFGDE---NGTVSLVDTKSTSCVLSSAVHS--QCVTGLVFSPHSVPFL 273 (344)
T ss_dssp -----CEEECC----CCCEEEEEECSSCTTEEEEEET---TSEEEEEESCC--CCEEEECCS--SCEEEEEECSSSSCCE
T ss_pred -----eeeeeecceeeccceeeeecCCCCcceEEecc---CCcEEEEECCCCcEEEEEcCCC--CCEEEEEEccCCCeEE
Confidence 122221111 11122478876666554433 3468889998877556665554 568889998754 577
Q ss_pred EEEecCCeeEEEEEeCCCCceeeecccccceeeEeecccCCcEEEEEEecCCCCceEEEEECCCC
Q 004766 365 VSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTE 429 (732)
Q Consensus 365 ~~~~~~g~~~l~~~d~~~g~~~~~l~~~~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~ 429 (732)
++...|+ .|++||+.+++. ..+..+.+.|..+.++|++..++.+.+.. .++..+++.+.
T Consensus 274 asgs~D~--~i~vwd~~~~~~-~~~~~H~~~V~~v~~sp~~~~llas~s~D---~~v~~w~v~~~ 332 (344)
T 4gqb_B 274 ASLSEDC--SLAVLDSSLSEL-FRSQAHRDFVRDATWSPLNHSLLTTVGWD---HQVVHHVVPTE 332 (344)
T ss_dssp EEEETTS--CEEEECTTCCEE-EEECCCSSCEEEEEECSSSTTEEEEEETT---SCEEEEECCC-
T ss_pred EEEeCCC--eEEEEECCCCcE-EEEcCCCCCEEEEEEeCCCCeEEEEEcCC---CeEEEEECCCC
Confidence 7877774 688999987765 34444567788999999998777665542 45777777654
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=3.4e-11 Score=139.06 Aligned_cols=259 Identities=12% Similarity=0.077 Sum_probs=166.1
Q ss_pred EeCCEEEEEEEcCCCCeeEEEEEeCCCCCceEEeCCCCcCCCCCEEEEeEEECCCCcEEEEEEeccC--------CceEE
Q 004766 88 KRGNKYFYFHNTGLQPQSVLYVQDSLDAKAKVLLDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSG--------SDWAT 159 (732)
Q Consensus 88 ~~g~~~~~~~~~~~~~~~~l~~r~~~~~~~~~l~D~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G--------~e~~~ 159 (732)
++|.++.|.....+.....||+++..+++... +. +. ......++|| ||+.|+|+..... ....+
T Consensus 138 pDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~--~~--~~---~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~ 209 (693)
T 3iuj_A 138 RDGRILAYSLSLAGSDWREIHLMDVESKQPLE--TP--LK---DVKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHK 209 (693)
T ss_dssp TTSSEEEEEEECSSCCEEEEEEEETTTCSEEE--EE--EE---EEESCCCEEE-TTTEEEEEESSCCC-------CCCCE
T ss_pred CCCCEEEEEEecCCCceEEEEEEECCCCCCCc--cc--cC---CceeccEEEe-CCCEEEEEEecCcccccccccCCCcE
Confidence 36777888877777777788888876554221 11 10 0112478899 9999999987642 23468
Q ss_pred EEEEECCCCce----eccccc--ceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCCcccEEEEEECCCCCCCCe
Q 004766 160 IKLMRIEDQIV----EADALS--WFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDI 233 (732)
Q Consensus 160 i~v~dl~~g~~----~~~~~~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~ 233 (732)
||++++.++.. +-.... ...+.++.|||||++|++++... ....+||++++.++...-+
T Consensus 210 v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~---------------~~~~~i~~~d~~~~~~~~~ 274 (693)
T 3iuj_A 210 VYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANS---------------TSGNRLYVKDLSQENAPLL 274 (693)
T ss_dssp EEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESS---------------SSCCEEEEEETTSTTCCCE
T ss_pred EEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccC---------------CCCcEEEEEECCCCCCceE
Confidence 99999987652 211111 11236789999999999987533 2335899999987654444
Q ss_pred EEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCCCCcEEeeecccceEEEEEecC
Q 004766 234 LCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDD 313 (732)
Q Consensus 234 ~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dg 313 (732)
.+....+ . ...+ ++++|++|+|.++... ....|+.++++++. ...++.++....... .|+++|
T Consensus 275 ~l~~~~~-~--~~~~-~~~~g~~l~~~t~~~~-~~~~l~~~d~~~~~-----------~~~~~~l~~~~~~~~-~~s~~g 337 (693)
T 3iuj_A 275 TVQGDLD-A--DVSL-VDNKGSTLYLLTNRDA-PNRRLVTVDAANPG-----------PAHWRDLIPERQQVL-TVHSGS 337 (693)
T ss_dssp EEECSSS-S--CEEE-EEEETTEEEEEECTTC-TTCEEEEEETTSCC-----------GGGCEEEECCCSSCE-EEEEET
T ss_pred EEeCCCC-c--eEEE-EeccCCEEEEEECCCC-CCCEEEEEeCCCCC-----------ccccEEEecCCCCEE-EEEEEC
Confidence 4443322 1 1223 7899999999876543 35789999998743 122566666544445 789999
Q ss_pred CeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecC-CEEEEEEec-CCeeEEEEEeCCCCceeeecc
Q 004766 314 TVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNL-NQMIVSYLS-DVKYVLQIRDLKNGSLLHQLP 390 (732)
Q Consensus 314 ~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~-~~l~~~~~~-~g~~~l~~~d~~~g~~~~~l~ 390 (732)
++|++...+++ ..+|++++++++. .+.+..+. ...+..+.+.++ +.+++.... .....|+.+|+++|+. +.+.
T Consensus 338 ~~lv~~~~~~g-~~~l~~~d~~g~~-~~~l~~p~-~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~-~~l~ 412 (693)
T 3iuj_A 338 GYLFAEYMVDA-TARVEQFDYEGKR-VREVALPG-LGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAI-SLYR 412 (693)
T ss_dssp TEEEEEEEETT-EEEEEEECTTSCE-EEEECCSS-SSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCE-EEEE
T ss_pred CEEEEEEEECC-eeEEEEEECCCCe-eEEeecCC-CceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeE-EEEE
Confidence 99988777654 5689999998654 34442222 234555555543 567666654 3446899999987764 4443
|
| >1m33_A BIOH protein; alpha-betta-alpha sandwich, structural genomics, PSI, protei structure initiative; HET: MSE 3OH; 1.70A {Escherichia coli} SCOP: c.69.1.26 | Back alignment and structure |
|---|
Probab=99.42 E-value=8.5e-13 Score=132.49 Aligned_cols=96 Identities=14% Similarity=0.054 Sum_probs=70.3
Q ss_pred cc-EEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCccHHHHHHHHHHHHHHcCCCC
Q 004766 481 HP-CLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQ 559 (732)
Q Consensus 481 ~P-~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d 559 (732)
.| .||++||..+... .|.. ....|. .+|.|+++|.||.|..... ...+++++. +.+.+. .+
T Consensus 12 g~~~vvllHG~~~~~~--~w~~-~~~~L~-~~~~vi~~Dl~G~G~S~~~---------~~~~~~~~~---~~l~~~--l~ 73 (258)
T 1m33_A 12 GNVHLVLLHGWGLNAE--VWRC-IDEELS-SHFTLHLVDLPGFGRSRGF---------GALSLADMA---EAVLQQ--AP 73 (258)
T ss_dssp CSSEEEEECCTTCCGG--GGGG-THHHHH-TTSEEEEECCTTSTTCCSC---------CCCCHHHHH---HHHHTT--SC
T ss_pred CCCeEEEECCCCCChH--HHHH-HHHHhh-cCcEEEEeeCCCCCCCCCC---------CCcCHHHHH---HHHHHH--hC
Confidence 46 8999999766543 3444 345577 7999999999998864322 123455543 444432 33
Q ss_pred CCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCc
Q 004766 560 SRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGV 595 (732)
Q Consensus 560 ~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~ 595 (732)
+++.++|+|+||.++..++.++|++++++|+..+.
T Consensus 74 -~~~~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~~~ 108 (258)
T 1m33_A 74 -DKAIWLGWSLGGLVASQIALTHPERVRALVTVASS 108 (258)
T ss_dssp -SSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCC
T ss_pred -CCeEEEEECHHHHHHHHHHHHhhHhhceEEEECCC
Confidence 78999999999999999999999999999886543
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=99.42 E-value=1.9e-10 Score=120.54 Aligned_cols=244 Identities=10% Similarity=0.029 Sum_probs=156.0
Q ss_pred EEEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceeccc-ccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCC
Q 004766 132 AALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADA-LSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGT 210 (732)
Q Consensus 132 ~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~-~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~ 210 (732)
..+..+.|||||++|+-.. ...+|++||+.+++.+... ........++|+|||+.|+....+
T Consensus 56 ~~v~~~~~s~d~~~l~s~s-----~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d------------ 118 (340)
T 1got_B 56 AKIYAMHWGTDSRLLLSAS-----QDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLD------------ 118 (340)
T ss_dssp SCEEEEEECTTSSEEEEEE-----TTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETT------------
T ss_pred CceEEEEECCCCCEEEEEe-----CCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCC------------
Confidence 3467889999999887553 2248999999988754321 112224678999999988876533
Q ss_pred cccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccC
Q 004766 211 ETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRD 290 (732)
Q Consensus 211 ~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~ 290 (732)
..+.+|++.+.............+...+..+.|+++++ ++..+.+ ..+.++|+.++.
T Consensus 119 -------~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d-----~~i~~wd~~~~~---------- 175 (340)
T 1got_B 119 -------NICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGD-----TTCALWDIETGQ---------- 175 (340)
T ss_dssp -------CEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETT-----SCEEEEETTTTE----------
T ss_pred -------CeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECC-----CcEEEEECCCCc----------
Confidence 36888888765433223322223344566788999987 4333322 237888987642
Q ss_pred CCCCcEEeeecccceE-EEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecCCEEEEEEec
Q 004766 291 GLLPFVKLIDGFDAQY-EVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLS 369 (732)
Q Consensus 291 ~~~~~~~l~~~~~~~~-~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~~l~~~~~~ 369 (732)
....+........ ..|+|+++.|+..+. ...|..+|+.++.....+..+. ..+..+.+++++.++++...
T Consensus 176 ---~~~~~~~h~~~v~~~~~~~~~~~l~sg~~----d~~v~~wd~~~~~~~~~~~~h~--~~v~~v~~~p~~~~l~s~s~ 246 (340)
T 1got_B 176 ---QTTTFTGHTGDVMSLSLAPDTRLFVSGAC----DASAKLWDVREGMCRQTFTGHE--SDINAICFFPNGNAFATGSD 246 (340)
T ss_dssp ---EEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEETTTCSEEEEECCCS--SCEEEEEECTTSSEEEEEET
T ss_pred ---EEEEEcCCCCceEEEEECCCCCEEEEEeC----CCcEEEEECCCCeeEEEEcCCc--CCEEEEEEcCCCCEEEEEcC
Confidence 1222222211112 248898876654333 3468888988776444444443 56888999987777788877
Q ss_pred CCeeEEEEEeCCCCceeeecccc--cceeeEeecccCCcEEEEEEecCCCCceEEEEECCCCC
Q 004766 370 DVKYVLQIRDLKNGSLLHQLPIE--IGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 430 (732)
Q Consensus 370 ~g~~~l~~~d~~~g~~~~~l~~~--~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~~ 430 (732)
++ .|.+||+.+++.+..+..+ ...+..+.+++++..++.... -..+..||+.+++
T Consensus 247 d~--~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~----d~~i~vwd~~~~~ 303 (340)
T 1got_B 247 DA--TCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYD----DFNCNVWDALKAD 303 (340)
T ss_dssp TS--CEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEET----TSEEEEEETTTCC
T ss_pred CC--cEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECC----CCeEEEEEcccCc
Confidence 75 6889999877654444432 235778889999986654432 2578999987764
|
| >1pja_A Palmitoyl-protein thioesterase 2 precursor; hydrolase, glycoprotein, lysosome; HET: NAG; 2.70A {Homo sapiens} SCOP: c.69.1.13 | Back alignment and structure |
|---|
Probab=99.41 E-value=2.1e-12 Score=133.00 Aligned_cols=104 Identities=17% Similarity=0.138 Sum_probs=77.7
Q ss_pred CCCccEEEEEcCCCCccCCCCcChhHHHHHHhc--CcEEEEEcccCCCCCchhHHhcccccCCccHHHHHHHHHHHHHHc
Q 004766 478 DGSHPCLLYGYGGFNISVTPSFSVSRTILMRHL--GAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISA 555 (732)
Q Consensus 478 ~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~--G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~ 555 (732)
.+..|.||++||..+... .|.. +...|.++ ||.|+++|+||.|..... ....++|+.+.+..+++.
T Consensus 33 ~~~~~~vvllHG~~~~~~--~~~~-~~~~L~~~~~g~~vi~~D~~G~G~s~~~---------~~~~~~~~~~~l~~~~~~ 100 (302)
T 1pja_A 33 RASYKPVIVVHGLFDSSY--SFRH-LLEYINETHPGTVVTVLDLFDGRESLRP---------LWEQVQGFREAVVPIMAK 100 (302)
T ss_dssp --CCCCEEEECCTTCCGG--GGHH-HHHHHHHHSTTCCEEECCSSCSGGGGSC---------HHHHHHHHHHHHHHHHHH
T ss_pred cCCCCeEEEECCCCCChh--HHHH-HHHHHHhcCCCcEEEEeccCCCccchhh---------HHHHHHHHHHHHHHHhhc
Confidence 356788999999876643 3444 34556657 999999999998642211 123577888888777766
Q ss_pred CCCCCCcEEEEecChhHHHHHHHHhhCCC-eeeEEEEcCCcc
Q 004766 556 GYTQSRKLCIEGGSNGGLLVGACINQRPD-LFGCALAHVGVM 596 (732)
Q Consensus 556 ~~~d~~~i~i~G~S~GG~l~~~~~~~~p~-~f~a~v~~~p~~ 596 (732)
. .+++.++|||+||+++..++.++|+ +++++|+..|..
T Consensus 101 ~---~~~~~lvGhS~Gg~ia~~~a~~~p~~~v~~lvl~~~~~ 139 (302)
T 1pja_A 101 A---PQGVHLICYSQGGLVCRALLSVMDDHNVDSFISLSSPQ 139 (302)
T ss_dssp C---TTCEEEEEETHHHHHHHHHHHHCTTCCEEEEEEESCCT
T ss_pred C---CCcEEEEEECHHHHHHHHHHHhcCccccCEEEEECCCc
Confidence 4 4689999999999999999999999 799998877654
|
| >1ukc_A ESTA, esterase; fungi, A/B hydrolase fold, acetylcholinesterase, H; HET: NAG MAN; 2.10A {Aspergillus niger} SCOP: c.69.1.17 | Back alignment and structure |
|---|
Probab=99.41 E-value=2.6e-13 Score=149.69 Aligned_cols=229 Identities=14% Similarity=0.101 Sum_probs=141.1
Q ss_pred EEEEEEEcCCCCCCCCccEEEEEcCCCCccC-CCCcChhHHHHHHhcCcEEEEEcccCCC-CCchhHHhcccccCCccHH
Q 004766 465 IPMFIVSKKNIKLDGSHPCLLYGYGGFNISV-TPSFSVSRTILMRHLGAVFCIANIRGGG-EYGEEWHKGGALAKKQNCF 542 (732)
Q Consensus 465 i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~-~~~~~~~~~~~l~~~G~~v~~~~~rG~g-~~g~~~~~~~~~~~~~~~~ 542 (732)
+.+.++.|+....+++.|+||++|||..... ...+..........+|++|+.+|||.+. +|+..-.... .......+
T Consensus 86 l~l~v~~P~~~~~~~~~Pviv~iHGGg~~~g~~~~~~~~~~~~~~~~g~vvv~~nYRlg~~Gf~~~~~~~~-~~~~n~gl 164 (522)
T 1ukc_A 86 LFINVFKPSTATSQSKLPVWLFIQGGGYAENSNANYNGTQVIQASDDVIVFVTFNYRVGALGFLASEKVRQ-NGDLNAGL 164 (522)
T ss_dssp CEEEEEEETTCCTTCCEEEEEEECCSTTTSCCSCSCCCHHHHHHTTSCCEEEEECCCCHHHHHCCCHHHHH-SSCTTHHH
T ss_pred CEEEEEECCCCCCCCCCCEEEEECCCccccCCccccCcHHHHHhcCCcEEEEEecccccccccccchhccc-cCCCChhH
Confidence 5567778876444567899999999953322 2344443222222469999999999532 3332111110 01234568
Q ss_pred HHHHHHHHHHHHcC---CCCCCcEEEEecChhHHHHHHHHhhC----CCeeeEEEEcCCcccccccccCCC--CCccccc
Q 004766 543 DDFISASEYLISAG---YTQSRKLCIEGGSNGGLLVGACINQR----PDLFGCALAHVGVMDMLRYHKFTI--GHAWVSD 613 (732)
Q Consensus 543 ~D~~~~~~~l~~~~---~~d~~~i~i~G~S~GG~l~~~~~~~~----p~~f~a~v~~~p~~d~~~~~~~~~--~~~~~~~ 613 (732)
.|+.+|++|+.++. -.||+||.|+|+|+||.+++.++... +.+|+++|+.+|............ .......
T Consensus 165 ~D~~~al~wv~~ni~~fggDp~~v~i~G~SaGg~~v~~~l~~~~~~~~~lf~~~i~~sg~~~~~~~~~~~~~~~~~~~~~ 244 (522)
T 1ukc_A 165 LDQRKALRWVKQYIEQFGGDPDHIVIHGVSAGAGSVAYHLSAYGGKDEGLFIGAIVESSFWPTQRTVSEMEFQFERFVND 244 (522)
T ss_dssp HHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHTGGGTCCCSSCSEEEEESCCCCCCCCSGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCchhEEEEEEChHHHHHHHHHhCCCccccccchhhhhcCCCcCCcCCHHHHHHHHHHHHHH
Confidence 99999999998762 35999999999999999988877653 679999999999764322111000 0001123
Q ss_pred cCCCCCHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCe--EEEEeeCCCCCCCchHHHHHHHHHHHhhcCCCCCCCCCCC
Q 004766 614 FGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPS--TLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNP 691 (732)
Q Consensus 614 ~g~p~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~p--~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 691 (732)
.|++...+..+.|++.++-..+.... .+.......+| ++..+...|..+.+.++.++.++.+.. ++|
T Consensus 245 ~gc~~~~~~~~~Lr~~~~~~l~~a~~-~~~~~~~~~~~~~~~~f~Pv~D~~~l~~~p~~~~~~g~~~----------~vp 313 (522)
T 1ukc_A 245 TGCSSARDSLECLREQDIATIQKGNT-GSPFPGGSSSPLPDWYFLPVTDGSLVPDELYNAFDAGNFI----------KVP 313 (522)
T ss_dssp TTCTTCSSHHHHHHHSCHHHHHHHSS-CCCCTTCCSSSCCSCCSCCCCCSSSSCSCHHHHHHHTCSC----------CCC
T ss_pred cCCCCHHHHHHHHHcCCHHHHHHHHH-hccccccccCcccccccccccCCcccCCCHHHHHhcCCCC----------CCC
Confidence 46553334455666654422111100 00000012234 566677788889999988887665443 789
Q ss_pred EEEEEeCCCCCCCC
Q 004766 692 IIGRIERKAGHGVG 705 (732)
Q Consensus 692 ~~~~~~~~~gH~~~ 705 (732)
+.+-...++||.+.
T Consensus 314 ~l~G~~~~Eg~~f~ 327 (522)
T 1ukc_A 314 VLVGDDTDEGSNFA 327 (522)
T ss_dssp EEEEEETBGGGGTS
T ss_pred EEEEeecchhHHhh
Confidence 99999999999875
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.41 E-value=3.5e-11 Score=140.15 Aligned_cols=255 Identities=9% Similarity=0.005 Sum_probs=159.8
Q ss_pred EECCCCcEEEEEEeccCCceEEEEEEECC---CCce--ecc----cccc-eeeeeEEEEeCCcEEEEEEecCCCCCCCCC
Q 004766 138 SVSEDAKYLAYALSYSGSDWATIKLMRIE---DQIV--EAD----ALSW-FKFSSIAWTHDSKGFFYSRYPAPKEGKDMD 207 (732)
Q Consensus 138 ~~SPDG~~la~~~~~~G~e~~~i~v~dl~---~g~~--~~~----~~~~-~~~~~~~WspDg~~l~y~~~~~~~~~~~~~ 207 (732)
.++|||++++|....+|.+...||+++.. +++. +.+ +..+ ....+++|||||+.|+|+....
T Consensus 113 ~p~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~-------- 184 (741)
T 1yr2_A 113 LPQRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDG-------- 184 (741)
T ss_dssp CCEEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEET--------
T ss_pred CCEEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCC--------
Confidence 35699999999999888767899999987 5542 211 1111 1347899999999999997653
Q ss_pred CCCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCc---------ceEEEEEEeCCC
Q 004766 208 AGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCD---------PVNKVYYCDLSA 278 (732)
Q Consensus 208 ~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~---------~~~~l~~~d~~~ 278 (732)
.....+|+++++.++......+ .. ....+++|||| +.|++...+... ...+||++++.+
T Consensus 185 ------G~e~~~i~v~dl~tg~~~~~~~-~~----~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt 252 (741)
T 1yr2_A 185 ------GSDWRTVKFVGVADGKPLADEL-KW----VKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGT 252 (741)
T ss_dssp ------TCSEEEEEEEETTTCCEEEEEE-EE----EESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTS
T ss_pred ------CCceEEEEEEECCCCCCCCccC-CC----ceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCC
Confidence 1233579999998875321111 11 01136899999 999998754431 135699999876
Q ss_pred CCCCcccccccCCCCCcEEeeeccc----ceEEEEEecCCeEEEEeCCC-CCCceEEEEeCCCCC-C-ceEeccCCCCCc
Q 004766 279 LPEGLEGFKKRDGLLPFVKLIDGFD----AQYEVIANDDTVFTFLTNKD-APKYKIIRVDLKEPN-D-WFEVIPEAERDV 351 (732)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~s~dg~~l~~~s~~~-~~~~~l~~~d~~~~~-~-~~~l~~~~~~~~ 351 (732)
+... -..+....+ .....|||||+.|++.+.+. .....|+.+|++++. . ++.|.++.. ..
T Consensus 253 ~~~~------------~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~-~~ 319 (741)
T 1yr2_A 253 PQSA------------DQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLK-AQ 319 (741)
T ss_dssp CGGG------------CEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSS-SC
T ss_pred Cchh------------CEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCC-ce
Confidence 4210 112222211 11235899999999888654 135689999998762 3 567766542 33
Q ss_pred eeEEEEecCCEEEEEEecCC-eeEEEEEeCCCC-ceeeecccc-cceeeEeecccCCcEEEEEEecCCCCceEEEEECCC
Q 004766 352 LESATAVNLNQMIVSYLSDV-KYVLQIRDLKNG-SLLHQLPIE-IGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKT 428 (732)
Q Consensus 352 l~~~~~~~~~~l~~~~~~~g-~~~l~~~d~~~g-~~~~~l~~~-~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~ 428 (732)
...+. ..++.+++....++ ..+|++++++++ ...+.+... ...+..++++ ++.++++...- .-.+++.+++.+
T Consensus 320 ~~~~~-~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~--~~~lv~~~~~d-g~~~l~~~~~~g 395 (741)
T 1yr2_A 320 WDFVD-GVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA--GNRLFASYIHD-AKSQVLAFDLDG 395 (741)
T ss_dssp EEEEE-EETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE--BTEEEEEEEET-TEEEEEEEETTS
T ss_pred EEEEe-ccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE--CCEEEEEEEEC-CEEEEEEEeCCC
Confidence 33332 34477888877654 568999999864 233444322 3445455544 55677766543 345788888754
Q ss_pred C
Q 004766 429 E 429 (732)
Q Consensus 429 ~ 429 (732)
+
T Consensus 396 ~ 396 (741)
T 1yr2_A 396 K 396 (741)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=99.40 E-value=7.8e-11 Score=124.82 Aligned_cols=205 Identities=12% Similarity=0.000 Sum_probs=131.4
Q ss_pred EEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCccc
Q 004766 134 LIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETD 213 (732)
Q Consensus 134 ~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~ 213 (732)
+..++|||||++||.+. |+...+|+|||+++++.+..........+++|||||+.|+....+
T Consensus 136 ~~~v~fSpDg~~la~as---~~~d~~i~iwd~~~~~~~~~~~~~~~V~~v~fspdg~~l~s~s~~--------------- 197 (365)
T 4h5i_A 136 TKLVYISREGTVAAIAS---SKVPAIMRIIDPSDLTEKFEIETRGEVKDLHFSTDGKVVAYITGS--------------- 197 (365)
T ss_dssp EEEEEECTTSSCEEEEE---SCSSCEEEEEETTTTEEEEEEECSSCCCEEEECTTSSEEEEECSS---------------
T ss_pred EEEEEEcCCCCEEEEEE---CCCCCEEEEeECCCCcEEEEeCCCCceEEEEEccCCceEEeccce---------------
Confidence 55788999999998874 333468999999999865332222235789999999999887422
Q ss_pred CCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCCC
Q 004766 214 SNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLL 293 (732)
Q Consensus 214 ~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~ 293 (732)
.+.+++..++... .......+...+..++|||||++++..+.++. ....++.+++...... ..
T Consensus 198 -----~~~~~~~~~~~~~--~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~-~~~~i~~~~~~~~~~~---------~~ 260 (365)
T 4h5i_A 198 -----SLEVISTVTGSCI--ARKTDFDKNWSLSKINFIADDTVLIAASLKKG-KGIVLTKISIKSGNTS---------VL 260 (365)
T ss_dssp -----CEEEEETTTCCEE--EEECCCCTTEEEEEEEEEETTEEEEEEEESSS-CCEEEEEEEEETTEEE---------EE
T ss_pred -----eEEEEEeccCcce--eeeecCCCCCCEEEEEEcCCCCEEEEEecCCc-ceeEEeecccccceec---------ce
Confidence 2555665544321 11111223345668999999999988776543 2345777776542100 00
Q ss_pred CcEEeeecccceE-EEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEec-cCCCCCceeEEEEecCCEEEEEEecCC
Q 004766 294 PFVKLIDGFDAQY-EVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVI-PEAERDVLESATAVNLNQMIVSYLSDV 371 (732)
Q Consensus 294 ~~~~l~~~~~~~~-~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~-~~~~~~~l~~~~~~~~~~l~~~~~~~g 371 (732)
....+........ ..|+|||+.|+..+.+ ..|.++|+.+++....+. .|. ..+..+.+++++.++++...|+
T Consensus 261 ~~~~~~~~~~~V~~~~~Spdg~~lasgs~D----~~V~iwd~~~~~~~~~~~~gH~--~~V~~v~fSpdg~~laS~S~D~ 334 (365)
T 4h5i_A 261 RSKQVTNRFKGITSMDVDMKGELAVLASND----NSIALVKLKDLSMSKIFKQAHS--FAITEVTISPDSTYVASVSAAN 334 (365)
T ss_dssp EEEEEESSCSCEEEEEECTTSCEEEEEETT----SCEEEEETTTTEEEEEETTSSS--SCEEEEEECTTSCEEEEEETTS
T ss_pred eeeeecCCCCCeEeEEECCCCCceEEEcCC----CEEEEEECCCCcEEEEecCccc--CCEEEEEECCCCCEEEEEeCCC
Confidence 0111222222222 2489999988765543 358889998876334433 233 6789999999888888988884
Q ss_pred eeEEEEEeCC
Q 004766 372 KYVLQIRDLK 381 (732)
Q Consensus 372 ~~~l~~~d~~ 381 (732)
.|++|++.
T Consensus 335 --tvrvw~ip 342 (365)
T 4h5i_A 335 --TIHIIKLP 342 (365)
T ss_dssp --EEEEEECC
T ss_pred --eEEEEEcC
Confidence 78888875
|
| >4g4g_A 4-O-methyl-glucuronoyl methylesterase; alpha/beta hydrolase, 3-layer alpha/beta/alpha sandwich, ROS fold, glucuronoyl esterase; 1.55A {Myceliophthora thermophila} PDB: 4g4i_A 4g4j_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=1.4e-11 Score=126.67 Aligned_cols=116 Identities=13% Similarity=-0.004 Sum_probs=89.4
Q ss_pred eeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcc--------cCCCCCchhHHhccc
Q 004766 463 TKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANI--------RGGGEYGEEWHKGGA 534 (732)
Q Consensus 463 ~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~--------rG~g~~g~~~~~~~~ 534 (732)
..+++.|++|++ .++.|+||.+||+. . .+. +||+++.+|. +|+.++|. |++.-.
T Consensus 123 ~sf~~~i~lP~g---~~P~Pvii~~~~~~-~------------~~~-~G~A~i~f~~~~va~d~~~gsrG~g~-f~~ly~ 184 (433)
T 4g4g_A 123 ISFSASIRKPSG---AGPFPAIIGIGGAS-I------------PIP-SNVATITFNNDEFGAQMGSGSRGQGK-FYDLFG 184 (433)
T ss_dssp EEEEEEEECCSS---SCCEEEEEEESCCC-S------------CCC-TTSEEEEECHHHHSCCSSGGGTTCSH-HHHHHC
T ss_pred EEEEEEEECCCC---CCCccEEEEECCCc-c------------ccC-CCeEEEEeCCcccccccCCCcCCccc-cccccC
Confidence 456899999976 47899999998741 1 033 8999999997 55667777 553222
Q ss_pred c--cCCccH--HHHHHHHHHHHHH----cCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCccc
Q 004766 535 L--AKKQNC--FDDFISASEYLIS----AGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMD 597 (732)
Q Consensus 535 ~--~~~~~~--~~D~~~~~~~l~~----~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d 597 (732)
. .++.-. .-|+..+++||.. +..+|++||+++|+|+||..++++++.. ++|+++|+.+|..+
T Consensus 185 ~~~~~gal~aWAWg~~raiDyL~~~~~~~~~VD~~RIgv~G~S~gG~~Al~aaA~D-~Ri~~vi~~~sg~~ 254 (433)
T 4g4g_A 185 RDHSAGSLTAWAWGVDRLIDGLEQVGAQASGIDTKRLGVTGCSRNGKGAFITGALV-DRIALTIPQESGAG 254 (433)
T ss_dssp TTCSCCHHHHHHHHHHHHHHHHHHHCHHHHCEEEEEEEEEEETHHHHHHHHHHHHC-TTCSEEEEESCCTT
T ss_pred CccchHHHHHHHHhHHHHHHHHHhccccCCCcChhHEEEEEeCCCcHHHHHHHhcC-CceEEEEEecCCCC
Confidence 1 222221 2589999999999 7889999999999999999999999985 58999999988654
|
| >3c6x_A Hydroxynitrilase; atomic resolution, hydroxynitril lyase, catalysis, protonation state, AB initio calculations, substrate bindin; 1.05A {Hevea brasiliensis} SCOP: c.69.1.20 PDB: 1sc9_A 1yas_A* 2g4l_A* 2yas_A 1qj4_A 3c6y_A 3c6z_A 3c70_A 3yas_A 4yas_A 5yas_A* 6yas_A 7yas_A* 1yb6_A* 1yb7_A 1sck_A 1sci_A 1scq_A 1dwo_A 1dwp_A ... | Back alignment and structure |
|---|
Probab=99.40 E-value=2.5e-12 Score=129.19 Aligned_cols=213 Identities=12% Similarity=0.058 Sum_probs=124.6
Q ss_pred ccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCccHHHHHHHHHHHHHHcCCCCC
Q 004766 481 HPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQS 560 (732)
Q Consensus 481 ~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~ 560 (732)
.|.||++||..... ..|.. ....|.++||.|+++|.||.|..... .....+++++.+.+..+++.-- ..
T Consensus 3 ~~~vvllHG~~~~~--~~w~~-~~~~L~~~g~~via~Dl~G~G~S~~~-------~~~~~~~~~~a~dl~~~l~~l~-~~ 71 (257)
T 3c6x_A 3 FAHFVLIHTICHGA--WIWHK-LKPLLEALGHKVTALDLAASGVDPRQ-------IEEIGSFDEYSEPLLTFLEALP-PG 71 (257)
T ss_dssp CCEEEEECCTTCCG--GGGTT-HHHHHHHTTCEEEEECCTTSTTCSCC-------GGGCCSHHHHTHHHHHHHHTSC-TT
T ss_pred CCcEEEEcCCccCc--CCHHH-HHHHHHhCCCEEEEeCCCCCCCCCCC-------cccccCHHHHHHHHHHHHHhcc-cc
Confidence 36799999987553 24554 34556558999999999998865321 0112457777776666665410 12
Q ss_pred CcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCcc---c--c---cc-ccc-CC-CCCcccc-----------------
Q 004766 561 RKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVM---D--M---LR-YHK-FT-IGHAWVS----------------- 612 (732)
Q Consensus 561 ~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~---d--~---~~-~~~-~~-~~~~~~~----------------- 612 (732)
+++.++||||||+++..++.++|++++++|...+.. . . .. ... .. ....+..
T Consensus 72 ~~~~lvGhSmGG~va~~~a~~~p~~v~~lVl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (257)
T 3c6x_A 72 EKVILVGESCGGLNIAIAADKYCEKIAAAVFHNSVLPDTEHCPSYVVDKLMEVFPDWKDTTYFTYTKDGKEITGLKLGFT 151 (257)
T ss_dssp CCEEEEEEETHHHHHHHHHHHHGGGEEEEEEEEECCCCSSSCTTHHHHHHHHHSCCCTTCEEEEEEETTEEEEEEECCHH
T ss_pred CCeEEEEECcchHHHHHHHHhCchhhheEEEEecccCCCCCcchhHHHHHhhcCcchhhhhhhhccCCCCccccccccHH
Confidence 589999999999999999999999999998765532 0 0 00 000 00 0000000
Q ss_pred ----ccCCCCCHHHHHHHHh-cCcccCC-------CCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhc
Q 004766 613 ----DFGCSEEEEEFYWLIK-YSPLHNV-------RRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLC 680 (732)
Q Consensus 613 ----~~g~p~~~~~~~~~~~-~sp~~~~-------~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~ 680 (732)
.+......+....... ..|.... ... ........|+|+++|++|..+|+..+.++++.+..
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~P~l~i~G~~D~~~p~~~~~~~~~~~~~--- 224 (257)
T 3c6x_A 152 LLRENLYTLCGPEEYELAKMLTRKGSLFQNILAKRPFF----TKEGYGSIKKIYVWTDQDEIFLPEFQLWQIENYKP--- 224 (257)
T ss_dssp HHHHHTSTTSCHHHHHHHHHHCCCBCCCHHHHHHSCCC----CTTTGGGSCEEEEECTTCSSSCHHHHHHHHHHSCC---
T ss_pred HHHHHHhcCCCHHHHHHHHHhcCCCccchhhhcccccc----ChhhcCcccEEEEEeCCCcccCHHHHHHHHHHCCC---
Confidence 0000011111111111 1111000 000 00001356999999999999999988877766542
Q ss_pred CCCCCCCCCCCEEEEEeCCCCCCCCCchHHHHHHHHHHHHHHHH
Q 004766 681 TSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAK 724 (732)
Q Consensus 681 ~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~ 724 (732)
.++++++++||....... .+..+.+.+|+..
T Consensus 225 -----------~~~~~i~~~gH~~~~e~P--~~~~~~l~~f~~~ 255 (257)
T 3c6x_A 225 -----------DKVYKVEGGDHKLQLTKT--KEIAEILQEVADT 255 (257)
T ss_dssp -----------SEEEECCSCCSCHHHHSH--HHHHHHHHHHHHH
T ss_pred -----------CeEEEeCCCCCCcccCCH--HHHHHHHHHHHHh
Confidence 388899999998643322 2444566777754
|
| >1ehy_A Protein (soluble epoxide hydrolase); alpha/beta hydrolase fold, epoxide degradation, epichlorohydrin; 2.10A {Agrobacterium tumefaciens} SCOP: c.69.1.11 | Back alignment and structure |
|---|
Probab=99.40 E-value=1.3e-11 Score=126.51 Aligned_cols=117 Identities=16% Similarity=0.073 Sum_probs=82.8
Q ss_pred cCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCC
Q 004766 459 KDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKK 538 (732)
Q Consensus 459 ~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~ 538 (732)
.+| .++.+... |..|.||++||.++... .|.. ....|+ ..|.|+++|.||.|..... . .....
T Consensus 16 ~~g-~~l~y~~~--------G~g~~lvllHG~~~~~~--~w~~-~~~~L~-~~~~via~Dl~G~G~S~~~-~---~~~~~ 78 (294)
T 1ehy_A 16 LPD-VKIHYVRE--------GAGPTLLLLHGWPGFWW--EWSK-VIGPLA-EHYDVIVPDLRGFGDSEKP-D---LNDLS 78 (294)
T ss_dssp CSS-CEEEEEEE--------ECSSEEEEECCSSCCGG--GGHH-HHHHHH-TTSEEEEECCTTSTTSCCC-C---TTCGG
T ss_pred ECC-EEEEEEEc--------CCCCEEEEECCCCcchh--hHHH-HHHHHh-hcCEEEecCCCCCCCCCCC-c---ccccc
Confidence 478 88876543 23478999999877643 4444 345567 5599999999998865321 0 00001
Q ss_pred ccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCC
Q 004766 539 QNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVG 594 (732)
Q Consensus 539 ~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p 594 (732)
..+++++.+.+..+++. ...+++.++|||+||.++..++.++|++++++|+..+
T Consensus 79 ~~~~~~~a~dl~~ll~~--l~~~~~~lvGhS~Gg~va~~~A~~~P~~v~~lvl~~~ 132 (294)
T 1ehy_A 79 KYSLDKAADDQAALLDA--LGIEKAYVVGHDFAAIVLHKFIRKYSDRVIKAAIFDP 132 (294)
T ss_dssp GGCHHHHHHHHHHHHHH--TTCCCEEEEEETHHHHHHHHHHHHTGGGEEEEEEECC
T ss_pred CcCHHHHHHHHHHHHHH--cCCCCEEEEEeChhHHHHHHHHHhChhheeEEEEecC
Confidence 24566666666666654 2335899999999999999999999999999988775
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.39 E-value=1.2e-10 Score=121.13 Aligned_cols=247 Identities=13% Similarity=0.020 Sum_probs=149.3
Q ss_pred EeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceeccc-ccc-----eeeeeEEEEeCCcEEEEEEecCCCCCCCCCC
Q 004766 135 IKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADA-LSW-----FKFSSIAWTHDSKGFFYSRYPAPKEGKDMDA 208 (732)
Q Consensus 135 ~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~-~~~-----~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~ 208 (732)
..++|||||++++++.... ..|+++|+.+++.+... ... .....++|+|||+.|+++......
T Consensus 37 ~~~~~s~dg~~l~v~~~~~----~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~------- 105 (337)
T 1pby_B 37 MVPMVAPGGRIAYATVNKS----ESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRL------- 105 (337)
T ss_dssp CCEEECTTSSEEEEEETTT----TEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEE-------
T ss_pred cceEEcCCCCEEEEEeCCC----CeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEeccccc-------
Confidence 3788999999887775322 37999999998854321 111 123679999999999887521100
Q ss_pred CCcccCC--cccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccc
Q 004766 209 GTETDSN--LYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGF 286 (732)
Q Consensus 209 ~~~~~~~--~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~ 286 (732)
..... ....|+++++.++... ..+.... ....+.|||||++|++. . ..++++|+.++..
T Consensus 106 --~~~~~~~~~~~i~v~d~~~~~~~--~~~~~~~---~~~~~~~s~dg~~l~~~--~-----~~i~~~d~~~~~~----- 166 (337)
T 1pby_B 106 --ELTHFEVQPTRVALYDAETLSRR--KAFEAPR---QITMLAWARDGSKLYGL--G-----RDLHVMDPEAGTL----- 166 (337)
T ss_dssp --CSSCEEECCCEEEEEETTTTEEE--EEEECCS---SCCCEEECTTSSCEEEE--S-----SSEEEEETTTTEE-----
T ss_pred --ccccccccCceEEEEECCCCcEE--EEEeCCC---CcceeEECCCCCEEEEe--C-----CeEEEEECCCCcE-----
Confidence 00000 2357999998765321 2222222 12467899999998776 2 2488999887420
Q ss_pred cccCCCCCcEEeeecc-cceEEEEEecCCeEEEEeCCCCC--------------------CceEEEEeCCCCCCceEecc
Q 004766 287 KKRDGLLPFVKLIDGF-DAQYEVIANDDTVFTFLTNKDAP--------------------KYKIIRVDLKEPNDWFEVIP 345 (732)
Q Consensus 287 ~~~~~~~~~~~l~~~~-~~~~~~~s~dg~~l~~~s~~~~~--------------------~~~l~~~d~~~~~~~~~l~~ 345 (732)
...+..+. .... .|+|||+.+++....+.. .+.|+.+|+++++ ...+..
T Consensus 167 --------~~~~~~~~~~~~~-~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~-~~~~~~ 236 (337)
T 1pby_B 167 --------VEDKPIQSWEAET-YAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGE-MAMREV 236 (337)
T ss_dssp --------EEEECSTTTTTTT-BCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCC-EEEEEE
T ss_pred --------eeeeeccccCCCc-eeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCC-ceEeec
Confidence 11111111 1111 478888877654322110 1168899998876 222211
Q ss_pred CCCCCceeEEEEecCCEEEEEEecCCeeEEEEEeCCCCceeeecccccceeeEeecccCCcEEEEEEecCCCCceEEEEE
Q 004766 346 EAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCN 425 (732)
Q Consensus 346 ~~~~~~l~~~~~~~~~~l~~~~~~~g~~~l~~~d~~~g~~~~~l~~~~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d 425 (732)
......+.++.+++++..++.. + ..|++||+++++.+..+..+ ..+..+.+++|++.+++. + ....++.+|
T Consensus 237 ~~~~~~~~~~~~s~dg~~l~~~--~--~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~--~--~~~~i~v~d 307 (337)
T 1pby_B 237 RIMDVFYFSTAVNPAKTRAFGA--Y--NVLESFDLEKNASIKRVPLP-HSYYSVNVSTDGSTVWLG--G--ALGDLAAYD 307 (337)
T ss_dssp EECSSCEEEEEECTTSSEEEEE--E--SEEEEEETTTTEEEEEEECS-SCCCEEEECTTSCEEEEE--S--BSSEEEEEE
T ss_pred CCCCCceeeEEECCCCCEEEEe--C--CeEEEEECCCCcCcceecCC-CceeeEEECCCCCEEEEE--c--CCCcEEEEE
Confidence 1112345678888865444443 2 58999999888765566543 234567888999977764 2 247899999
Q ss_pred CCCCC
Q 004766 426 LKTET 430 (732)
Q Consensus 426 ~~~~~ 430 (732)
+.+++
T Consensus 308 ~~~~~ 312 (337)
T 1pby_B 308 AETLE 312 (337)
T ss_dssp TTTCC
T ss_pred CcCCc
Confidence 98885
|
| >2d81_A PHB depolymerase; alpha/beta hydrolase fold, circular permutation, hydrolase; HET: NAG RB3; 1.66A {Penicillium funiculosum} SCOP: c.69.1.37 PDB: 2d80_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=5.8e-13 Score=136.36 Aligned_cols=150 Identities=12% Similarity=0.019 Sum_probs=98.0
Q ss_pred CCCCCcEEEEecChhHHHHHHHHhhCCCeee-EEEEcCCcccccccccCCCCCccccccCCCCCHHHHHHHHhcCcccCC
Q 004766 557 YTQSRKLCIEGGSNGGLLVGACINQRPDLFG-CALAHVGVMDMLRYHKFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNV 635 (732)
Q Consensus 557 ~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~-a~v~~~p~~d~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~sp~~~~ 635 (732)
.+|++||+|+|+|+||+|++.++..+|++|+ ++++.++......... .....+...++.+..++........+|+..+
T Consensus 7 ~iD~~RI~v~G~S~GG~mA~~~a~~~p~~fa~g~~v~ag~p~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 85 (318)
T 2d81_A 7 NVNPNSVSVSGLASGGYMAAQLGVAYSDVFNVGFGVFAGGPYDCARNQ-YYTSCMYNGYPSITTPTANMKSWSGNQIASV 85 (318)
T ss_dssp CEEEEEEEEEEETHHHHHHHHHHHHTTTTSCSEEEEESCCCTTTTSSS-CGGGGSTTCCCCCHHHHHHHHHHBTTTBCCG
T ss_pred CcCcceEEEEEECHHHHHHHHHHHHCchhhhccceEEecccccccchH-HHHHHhhccCCCCCCHHHHHHHhhcccCChh
Confidence 4799999999999999999999999999998 7665554221110000 0000000001212122222111111455544
Q ss_pred CCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhcCCCCCCCCC--CCEEEEEeCCCCCCCCCchH----
Q 004766 636 RRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQT--NPIIGRIERKAGHGVGLPTQ---- 709 (732)
Q Consensus 636 ~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~gH~~~~~~~---- 709 (732)
.+. ..+|+||+||++|.+||+.++.+++++|++. + .++++++++++||++.....
T Consensus 86 ~~l---------~~~Pvli~HG~~D~vVP~~~s~~~~~~L~~~----------g~~~~ve~~~~~g~gH~~~~~~~~~~~ 146 (318)
T 2d81_A 86 ANL---------GQRKIYMWTGSSDTTVGPNVMNQLKAQLGNF----------DNSANVSYVTTTGAVHTFPTDFNGAGD 146 (318)
T ss_dssp GGG---------GGCEEEEEEETTCCSSCHHHHHHHHHHHTTT----------SCGGGEEEEEETTCCSSEEESSCCTTC
T ss_pred HcC---------CCCcEEEEeCCCCCCcCHHHHHHHHHHHHhc----------CCCcceEEEEeCCCCCCCccCCcccCc
Confidence 442 3479999999999999999999999999976 5 37999999999998642211
Q ss_pred -------------HHHHHHHHHHHHHHHHh
Q 004766 710 -------------KMIDEAADRYGFMAKML 726 (732)
Q Consensus 710 -------------~~~~~~~~~~~fl~~~l 726 (732)
..++....++.||...|
T Consensus 147 ~~c~~~~~pyi~~~~~d~~~~i~~ff~g~~ 176 (318)
T 2d81_A 147 NSCSLSTSPYISNCNYDGAGAALKWIYGSL 176 (318)
T ss_dssp CCTTSCCTTCEEECSSCHHHHHHHHHHSSC
T ss_pred cccccCCCCcccCCCChHHHHHHHHHhccC
Confidence 01566678889987654
|
| >3ibt_A 1H-3-hydroxy-4-oxoquinoline 2,4-dioxygenase; QDO, oxidoreductase; 2.60A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.39 E-value=3.6e-12 Score=127.94 Aligned_cols=116 Identities=13% Similarity=0.019 Sum_probs=85.2
Q ss_pred CCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCc
Q 004766 460 DGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQ 539 (732)
Q Consensus 460 dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~ 539 (732)
+| .++.+...-+ ...|+||++||..+... .|.. ....|+ ++|.|+++|.||.|..... ...
T Consensus 7 ~g-~~l~~~~~g~------~~~~~vv~lHG~~~~~~--~~~~-~~~~L~-~~~~v~~~D~~G~G~S~~~--------~~~ 67 (264)
T 3ibt_A 7 NG-TLMTYSESGD------PHAPTLFLLSGWCQDHR--LFKN-LAPLLA-RDFHVICPDWRGHDAKQTD--------SGD 67 (264)
T ss_dssp TT-EECCEEEESC------SSSCEEEEECCTTCCGG--GGTT-HHHHHT-TTSEEEEECCTTCSTTCCC--------CSC
T ss_pred CC-eEEEEEEeCC------CCCCeEEEEcCCCCcHh--HHHH-HHHHHH-hcCcEEEEccccCCCCCCC--------ccc
Confidence 67 7777654422 23589999999887653 3444 345666 6799999999998864321 223
Q ss_pred cHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhC-CCeeeEEEEcCCcc
Q 004766 540 NCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQR-PDLFGCALAHVGVM 596 (732)
Q Consensus 540 ~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~-p~~f~a~v~~~p~~ 596 (732)
.+++++.+.+..+++. .+.+++.++|+|+||+++..++.++ |++++++|+..|..
T Consensus 68 ~~~~~~~~~~~~~l~~--l~~~~~~lvGhS~Gg~ia~~~a~~~~p~~v~~lvl~~~~~ 123 (264)
T 3ibt_A 68 FDSQTLAQDLLAFIDA--KGIRDFQMVSTSHGCWVNIDVCEQLGAARLPKTIIIDWLL 123 (264)
T ss_dssp CCHHHHHHHHHHHHHH--TTCCSEEEEEETTHHHHHHHHHHHSCTTTSCEEEEESCCS
T ss_pred cCHHHHHHHHHHHHHh--cCCCceEEEecchhHHHHHHHHHhhChhhhheEEEecCCC
Confidence 4566666666666554 2345899999999999999999999 99999999988755
|
| >2psd_A Renilla-luciferin 2-monooxygenase; alpha/beta-hydrolase, luciferase, oxidoreductase; 1.40A {Renilla reniformis} PDB: 2pse_A 2psj_A* 2psh_A 2psf_A | Back alignment and structure |
|---|
Probab=99.37 E-value=3.4e-12 Score=132.58 Aligned_cols=116 Identities=12% Similarity=0.058 Sum_probs=82.9
Q ss_pred cCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCC
Q 004766 459 KDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKK 538 (732)
Q Consensus 459 ~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~ 538 (732)
.+| .++.+... + .++.|.||++||..+... .|... ...|+ ..|.|+++|.||.|..... ...
T Consensus 28 ~~g-~~l~y~~~---G---~g~~~~vvllHG~~~~~~--~w~~~-~~~L~-~~~~via~Dl~GhG~S~~~-------~~~ 89 (318)
T 2psd_A 28 VLD-SFINYYDS---E---KHAENAVIFLHGNATSSY--LWRHV-VPHIE-PVARCIIPDLIGMGKSGKS-------GNG 89 (318)
T ss_dssp ETT-EEEEEEEC---C---SCTTSEEEEECCTTCCGG--GGTTT-GGGTT-TTSEEEEECCTTSTTCCCC-------TTS
T ss_pred eCC-eEEEEEEc---C---CCCCCeEEEECCCCCcHH--HHHHH-HHHhh-hcCeEEEEeCCCCCCCCCC-------CCC
Confidence 478 77765432 2 234578999999876643 34432 34466 5689999999998864321 112
Q ss_pred ccHHHHHHHHHHHHHHcCCCCC-CcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCC
Q 004766 539 QNCFDDFISASEYLISAGYTQS-RKLCIEGGSNGGLLVGACINQRPDLFGCALAHVG 594 (732)
Q Consensus 539 ~~~~~D~~~~~~~l~~~~~~d~-~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p 594 (732)
..+++++.+.+..+++. .+. +++.++|+||||.+++.++.++|++++++|+..|
T Consensus 90 ~~~~~~~a~dl~~ll~~--l~~~~~~~lvGhSmGg~ia~~~A~~~P~~v~~lvl~~~ 144 (318)
T 2psd_A 90 SYRLLDHYKYLTAWFEL--LNLPKKIIFVGHDWGAALAFHYAYEHQDRIKAIVHMES 144 (318)
T ss_dssp CCSHHHHHHHHHHHHTT--SCCCSSEEEEEEEHHHHHHHHHHHHCTTSEEEEEEEEE
T ss_pred ccCHHHHHHHHHHHHHh--cCCCCCeEEEEEChhHHHHHHHHHhChHhhheEEEecc
Confidence 24577777777777765 333 6899999999999999999999999999988543
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=99.37 E-value=4.9e-10 Score=116.42 Aligned_cols=238 Identities=10% Similarity=0.010 Sum_probs=155.3
Q ss_pred EEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceeccc------ccceeeeeEEEEeCCcEEEEEEecCCCCCCCCC
Q 004766 134 LIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADA------LSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMD 207 (732)
Q Consensus 134 ~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~------~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~ 207 (732)
+..+.|||||++|+... + ..|++||+.+++..... ........++|+||++.|+....+
T Consensus 54 v~~~~~~~~~~~l~~~~--d----g~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------- 118 (337)
T 1gxr_A 54 VCAVTISNPTRHVYTGG--K----GCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEA--------- 118 (337)
T ss_dssp CCEEEECSSSSEEEEEC--B----SEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESS---------
T ss_pred eEEEEEecCCcEEEEcC--C----CeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCC---------
Confidence 55889999999998763 2 47999999887532111 122235789999999988887532
Q ss_pred CCCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCccccc
Q 004766 208 AGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFK 287 (732)
Q Consensus 208 ~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~ 287 (732)
..|++|++.++.......+.. +......+.|+|+|++|+....++ .++++|+.++.
T Consensus 119 ----------~~i~~~d~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg-----~v~~~d~~~~~------- 174 (337)
T 1gxr_A 119 ----------STLSIWDLAAPTPRIKAELTS--SAPACYALAISPDSKVCFSCCSDG-----NIAVWDLHNQT------- 174 (337)
T ss_dssp ----------SEEEEEECCCC--EEEEEEEC--SSSCEEEEEECTTSSEEEEEETTS-----CEEEEETTTTE-------
T ss_pred ----------CcEEEEECCCCCcceeeeccc--CCCceEEEEECCCCCEEEEEeCCC-----cEEEEeCCCCc-------
Confidence 368899988764322222222 233456889999999988765433 38888987632
Q ss_pred ccCCCCCcEEeeecccce-EEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecCCEEEEE
Q 004766 288 KRDGLLPFVKLIDGFDAQ-YEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVS 366 (732)
Q Consensus 288 ~~~~~~~~~~l~~~~~~~-~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~~l~~~ 366 (732)
....+....... ...|+|+++.|+..+. ...|..+|+.++.. ...+.. ...+..+.+++++.+++.
T Consensus 175 ------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----dg~i~~~d~~~~~~-~~~~~~--~~~v~~~~~s~~~~~l~~ 241 (337)
T 1gxr_A 175 ------LVRQFQGHTDGASCIDISNDGTKLWTGGL----DNTVRSWDLREGRQ-LQQHDF--TSQIFSLGYCPTGEWLAV 241 (337)
T ss_dssp ------EEEEECCCSSCEEEEEECTTSSEEEEEET----TSEEEEEETTTTEE-EEEEEC--SSCEEEEEECTTSSEEEE
T ss_pred ------eeeeeecccCceEEEEECCCCCEEEEEec----CCcEEEEECCCCce-EeeecC--CCceEEEEECCCCCEEEE
Confidence 122222111111 2258899888776553 34689999987752 222333 245788899886666666
Q ss_pred EecCCeeEEEEEeCCCCceeeecccccceeeEeecccCCcEEEEEEecCCCCceEEEEECCCCC
Q 004766 367 YLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 430 (732)
Q Consensus 367 ~~~~g~~~l~~~d~~~g~~~~~l~~~~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~~ 430 (732)
...++ .|++|++.+++. ..+......+..+.++++++.++.. +. -..+..||+.+++
T Consensus 242 ~~~~~--~i~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~-~~---dg~i~~~~~~~~~ 298 (337)
T 1gxr_A 242 GMESS--NVEVLHVNKPDK-YQLHLHESCVLSLKFAYCGKWFVST-GK---DNLLNAWRTPYGA 298 (337)
T ss_dssp EETTS--CEEEEETTSSCE-EEECCCSSCEEEEEECTTSSEEEEE-ET---TSEEEEEETTTCC
T ss_pred EcCCC--cEEEEECCCCCe-EEEcCCccceeEEEECCCCCEEEEe-cC---CCcEEEEECCCCe
Confidence 66664 688999986664 4454456677888899999866533 22 3579999998874
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.36 E-value=6.9e-10 Score=116.81 Aligned_cols=242 Identities=10% Similarity=0.008 Sum_probs=151.9
Q ss_pred EEEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecccc-cceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCC
Q 004766 132 AALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADAL-SWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGT 210 (732)
Q Consensus 132 ~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~-~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~ 210 (732)
..+..++|||||++|+.... + ..|++||+.+++.+.... .......++|+||++.|+....+
T Consensus 33 ~~v~~~~~s~~~~~l~~~~~-d----g~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d------------ 95 (369)
T 3zwl_B 33 RPLTQVKYNKEGDLLFSCSK-D----SSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSAD------------ 95 (369)
T ss_dssp SCEEEEEECTTSCEEEEEES-S----SCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETT------------
T ss_pred ceEEEEEEcCCCCEEEEEeC-C----CEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCC------------
Confidence 34778999999999887642 2 379999999988553221 22235789999999988876533
Q ss_pred cccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccC
Q 004766 211 ETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRD 290 (732)
Q Consensus 211 ~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~ 290 (732)
..|++|++.++.. +..+. .......+.|+|+|++++....+.......+.++++....... .+.. .
T Consensus 96 -------g~i~iwd~~~~~~--~~~~~---~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~-~~~~-~ 161 (369)
T 3zwl_B 96 -------YSIKLWDVSNGQC--VATWK---SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATH-ELTK-V 161 (369)
T ss_dssp -------TEEEEEETTTCCE--EEEEE---CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTC-CEEE-E
T ss_pred -------CeEEEEECCCCcE--EEEee---cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccce-eecc-c
Confidence 3689999987642 22333 2234568999999999988765421122457777776532110 0000 0
Q ss_pred CCCCcEEeeecc---cceEEEEEecCCeEEEEeCCCCCCceEEEEeCCCC-CCceEeccCCCCCceeEEEEecCCEEEEE
Q 004766 291 GLLPFVKLIDGF---DAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEP-NDWFEVIPEAERDVLESATAVNLNQMIVS 366 (732)
Q Consensus 291 ~~~~~~~l~~~~---~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~-~~~~~l~~~~~~~~l~~~~~~~~~~l~~~ 366 (732)
...+...+.... ......|+|+++.|+..+. ...|..+|+.+. .....+..+ ...+..+.+++++.+++.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~ 235 (369)
T 3zwl_B 162 SEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHK----DGKISKYDVSNNYEYVDSIDLH--EKSISDMQFSPDLTYFIT 235 (369)
T ss_dssp CSSCSEEEECCTTCCCEEEEEECGGGCEEEEEET----TSEEEEEETTTTTEEEEEEECC--SSCEEEEEECTTSSEEEE
T ss_pred ccceeeeccCCcCccceeEEEEcCCCCEEEEEcC----CCEEEEEECCCCcEeEEEEecC--CCceeEEEECCCCCEEEE
Confidence 001122222111 1122358899888776543 347899999873 323333333 356888999987667777
Q ss_pred EecCCeeEEEEEeCCCCceeeecccccceeeEeecccCCcEEEEEEe
Q 004766 367 YLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFT 413 (732)
Q Consensus 367 ~~~~g~~~l~~~d~~~g~~~~~l~~~~g~v~~~~~s~d~~~l~~~~s 413 (732)
...++ .|++||+.+++.+..+. ....+..+.+++++..+++...
T Consensus 236 ~~~d~--~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~ 279 (369)
T 3zwl_B 236 SSRDT--NSFLVDVSTLQVLKKYE-TDCPLNTAVITPLKEFIILGGG 279 (369)
T ss_dssp EETTS--EEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEEC
T ss_pred ecCCc--eEEEEECCCCceeeeec-CCCCceeEEecCCCceEEEeec
Confidence 77664 78999998887655555 3445667788899887766543
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.36 E-value=7e-10 Score=116.34 Aligned_cols=258 Identities=14% Similarity=0.102 Sum_probs=138.2
Q ss_pred EeEEECCCCcEEEEEEeccCCceEEEEEEECCCCcee--cc-cccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCc
Q 004766 135 IKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVE--AD-ALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTE 211 (732)
Q Consensus 135 ~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~--~~-~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~ 211 (732)
..++|||||+ |+++ +..+ +...|++||+++|+.. .. .........++|+|||+.|+++...
T Consensus 43 ~~~a~spdg~-l~~~-~~~~-~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~------------- 106 (347)
T 3hfq_A 43 TYLALSAKDC-LYSV-DKED-DEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYH------------- 106 (347)
T ss_dssp CCEEECTTCE-EEEE-EEET-TEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETT-------------
T ss_pred ceEEEccCCe-EEEE-EecC-CCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCC-------------
Confidence 3688999999 5444 3322 2368999999888732 21 1112234679999999998887522
Q ss_pred ccCCcccEEEEEECCCCCCCCeEEEe--cCC-------CCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCC-CCCC
Q 004766 212 TDSNLYHEFYYHFLGTKQSEDILCWK--DPE-------HPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLS-ALPE 281 (732)
Q Consensus 212 ~~~~~~~~v~~~~lgt~~~~~~~v~~--~~~-------~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~-~~~~ 281 (732)
...+.+|++...... ..+.. ... .......++|||||+ +++.. ... ..++++++. ++.
T Consensus 107 -----~~~v~v~~~~~~g~~-~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~-~~~---~~v~~~~~~~~g~- 174 (347)
T 3hfq_A 107 -----KGTAEVMKIAADGAL-TLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVID-LGS---DKVYVYNVSDAGQ- 174 (347)
T ss_dssp -----TTEEEEEEECTTSCE-EEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEE-TTT---TEEEEEEECTTSC-
T ss_pred -----CCEEEEEEeCCCCCe-eecceeecCCCCCCccccCCCceEEEECCCCc-EEEEe-CCC---CEEEEEEECCCCc-
Confidence 235677776432211 11111 110 011345689999999 54433 222 357777876 321
Q ss_pred CcccccccCCCCCcEEeee--cccceEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceE---eccCCC----CCce
Q 004766 282 GLEGFKKRDGLLPFVKLID--GFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFE---VIPEAE----RDVL 352 (732)
Q Consensus 282 ~~~~~~~~~~~~~~~~l~~--~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~---l~~~~~----~~~l 352 (732)
......+.. +.......|+|||+.+|+....+ ....++.++..++. ++. +..... ....
T Consensus 175 ----------~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~-~~v~v~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~ 242 (347)
T 3hfq_A 175 ----------LSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELS-SQIASLKYDTQTGA-FTQLGIVKTIPADYTAHNGA 242 (347)
T ss_dssp ----------EEEEEEEECCTTCCEEEEEECTTSSEEEEEETTT-TEEEEEEEETTTTE-EEEEEEEESSCTTCCSCCEE
T ss_pred ----------EEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCC-CEEEEEEecCCCCc-eEEeeeeeecCCCCCCCCcc
Confidence 000111111 11122236999999888765443 23345544443343 221 111111 1346
Q ss_pred eEEEEecCCE-EEEEEecCCeeEEEEEeCC-CCce--eeecccccceeeEeecccCCcEEEEEEecCCCCceEEEEECCC
Q 004766 353 ESATAVNLNQ-MIVSYLSDVKYVLQIRDLK-NGSL--LHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKT 428 (732)
Q Consensus 353 ~~~~~~~~~~-l~~~~~~~g~~~l~~~d~~-~g~~--~~~l~~~~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~ 428 (732)
..+.++++++ |++....+ ..|.+|+++ +|+. +..+......+..+.+++|++.++++-. ....-.+|.+|..+
T Consensus 243 ~~i~~spdG~~l~v~~~~~--~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~-~~~~v~v~~~d~~t 319 (347)
T 3hfq_A 243 AAIRLSHDGHFLYVSNRGY--NTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQ-NTDNATLYARDLTS 319 (347)
T ss_dssp EEEEECTTSCEEEEEEETT--TEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEET-TTTEEEEEEECTTT
T ss_pred eeEEECCCCCEEEEEeCCC--CEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEc-CCCcEEEEEEeCCC
Confidence 6788888654 66665545 467778775 2332 2223222233557788999997765433 22334556668777
Q ss_pred CCCceEEEE
Q 004766 429 ETPEMKIFR 437 (732)
Q Consensus 429 ~~~~~~~l~ 437 (732)
++ ++.+.
T Consensus 320 g~--l~~~~ 326 (347)
T 3hfq_A 320 GK--LSLLQ 326 (347)
T ss_dssp CC--EEEEE
T ss_pred Ce--EEecc
Confidence 75 44443
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.36 E-value=2e-09 Score=113.19 Aligned_cols=251 Identities=12% Similarity=0.022 Sum_probs=158.8
Q ss_pred EEEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCc
Q 004766 132 AALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTE 211 (732)
Q Consensus 132 ~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~ 211 (732)
..+..+.|||||++|+.... + ..|++||+.+++.+...........++|+||++.|+....+.
T Consensus 75 ~~v~~~~~~~~~~~l~s~~~-d----g~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~------------ 137 (369)
T 3zwl_B 75 GTIWSIDVDCFTKYCVTGSA-D----YSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNV------------ 137 (369)
T ss_dssp SCEEEEEECTTSSEEEEEET-T----TEEEEEETTTCCEEEEEECSSCEEEEEECTTSSEEEEEECCB------------
T ss_pred CcEEEEEEcCCCCEEEEEeC-C----CeEEEEECCCCcEEEEeecCCCeEEEEEccCCCEEEEecCCc------------
Confidence 34778999999999986642 2 379999999998654332333457899999999998876431
Q ss_pred ccCCcccEEEEEECCCCCCCCeEEE---------ecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCC
Q 004766 212 TDSNLYHEFYYHFLGTKQSEDILCW---------KDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEG 282 (732)
Q Consensus 212 ~~~~~~~~v~~~~lgt~~~~~~~v~---------~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~ 282 (732)
......|.+|++.+......... ...........++|+|||++|+....+ ..|+++|+.+..
T Consensus 138 --~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~-- 208 (369)
T 3zwl_B 138 --MKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKD-----GKISKYDVSNNY-- 208 (369)
T ss_dssp --TTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETT-----SEEEEEETTTTT--
T ss_pred --cCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCC-----CEEEEEECCCCc--
Confidence 11234677777765432211111 111111145688999999998776533 348888987621
Q ss_pred cccccccCCCCCcEEeeecccce-EEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecCC
Q 004766 283 LEGFKKRDGLLPFVKLIDGFDAQ-YEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLN 361 (732)
Q Consensus 283 ~~~~~~~~~~~~~~~l~~~~~~~-~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~ 361 (732)
.....+....... ...|+|+++.|+..+. ...|..+|+.++.... .+.. ...+..+.+++++
T Consensus 209 ----------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d~~i~v~d~~~~~~~~-~~~~--~~~~~~~~~~~~~ 271 (369)
T 3zwl_B 209 ----------EYVDSIDLHEKSISDMQFSPDLTYFITSSR----DTNSFLVDVSTLQVLK-KYET--DCPLNTAVITPLK 271 (369)
T ss_dssp ----------EEEEEEECCSSCEEEEEECTTSSEEEEEET----TSEEEEEETTTCCEEE-EEEC--SSCEEEEEECSSS
T ss_pred ----------EeEEEEecCCCceeEEEECCCCCEEEEecC----CceEEEEECCCCceee-eecC--CCCceeEEecCCC
Confidence 1122222221111 2258899988876544 3468899998876333 3333 3567788888765
Q ss_pred EEEEEEecCC------------eeEEEEEeCCCCceeeecccccceeeEeecccCCcEEEEEEecCCCCceEEEEECCCC
Q 004766 362 QMIVSYLSDV------------KYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTE 429 (732)
Q Consensus 362 ~l~~~~~~~g------------~~~l~~~d~~~g~~~~~l~~~~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~ 429 (732)
..++....++ ...+.+||..+++.+..+..+.+.+..+.++++++.++ +.+. -..+..|++.++
T Consensus 272 ~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-s~~~---dg~v~iw~~~~~ 347 (369)
T 3zwl_B 272 EFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYA-SGGE---DGFIRLHHFEKS 347 (369)
T ss_dssp SEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEE-EEET---TSEEEEEEECHH
T ss_pred ceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEE-EEcC---CCeEEEEECccc
Confidence 5555544433 12789999988887666665677788899999988554 3332 357888887654
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.36 E-value=1e-09 Score=112.03 Aligned_cols=266 Identities=12% Similarity=0.141 Sum_probs=168.8
Q ss_pred CCcEEeCCEEEEEEEcCCCCeeEEEEEeCCCCCceEEeCCCCcCCCCCEEEEeEEECCCCcEEEEEEeccCC--------
Q 004766 84 DAPFKRGNKYFYFHNTGLQPQSVLYVQDSLDAKAKVLLDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSGS-------- 155 (732)
Q Consensus 84 ~~p~~~g~~~~~~~~~~~~~~~~l~~r~~~~~~~~~l~D~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~-------- 155 (732)
.....+|+++||..... ...||+++..+...+.|.|-. .--++|+|++|.|+....+.
T Consensus 19 g~~~~~g~~iy~~n~~d---~~~ly~~~~dg~~~~~l~~~~-----------~~~i~~~g~~Iyy~~~~~~~~~~~~~~~ 84 (302)
T 3s25_A 19 GLFCESDGEVFFSNTND---NGRLYAMNIDGSNIHKLSNDT-----------AMYINADKNYVYYVRNNNQKITSQTFFS 84 (302)
T ss_dssp TCEEEETTEEEEEEGGG---TTEEEEEETTSCSCEEEEEEE-----------EEEEEECSSEEEEEEECC------CCSS
T ss_pred eEEEEeCCEEEEEeCCC---CceEEEEcCCCCCCEEccCCc-----------eeeEEEcCCEEEEEECCCCcccccceec
Confidence 34467899888875322 245999987555555555421 22468999999999876542
Q ss_pred -ceEEEEEEECCCCceecccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCCcccEEEEEECCCCCCCCeE
Q 004766 156 -DWATIKLMRIEDQIVEADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDIL 234 (732)
Q Consensus 156 -e~~~i~v~dl~~g~~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~ 234 (732)
....||.+++++++....... ....|+++|++|+|+.... .....||+.++.+... ..
T Consensus 85 ~n~~~Iy~i~~dg~~~~~l~~~----~~~~~s~~g~~Iy~~~~~~---------------~~~~~Iy~~~~dGs~~--~~ 143 (302)
T 3s25_A 85 YDRNSLCRIKRNGHGSTVLDPD----PCIYASLIGNYIYYLHYDT---------------QTATSLYRIRIDGEEK--KK 143 (302)
T ss_dssp CCSEEEEEEETTSCCCEEEECS----CEEEEEEETTEEEEEEESS---------------SSCEEEEEEETTSCCC--EE
T ss_pred cCCCeEEEEeCCCCcceEeecC----CccEEEEeCCEEEEEeecC---------------CCCceEEEEECCCCCe--EE
Confidence 247899999998874332221 3348999999999985211 1235799999976433 24
Q ss_pred EEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCCCCcEEeeecccceEEEEEecCC
Q 004766 235 CWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDT 314 (732)
Q Consensus 235 v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dg~ 314 (732)
|..... ..++++|++|+++.. + ...||+++++++. .+.+..+ .....+.|+|+
T Consensus 144 lt~~~~-------~~~~~~g~~iy~t~~-g---~~~Iy~~~l~g~~--------------~~~l~~~--~~~~~~~P~g~ 196 (302)
T 3s25_A 144 IKNHYL-------FTCNTSDRYFYYNNP-K---NGQLYRYDTASQS--------------EALFYDC--NCYKPVVLDDT 196 (302)
T ss_dssp EESSCC-------CCSEEETTEEEEECT-T---TCCEEEEETTTTE--------------EEEEECS--CEEEEEEEETT
T ss_pred EeCCCc-------eEeeEECCEEEEEeC-C---CceEEEEECCCCC--------------EEEEeCC--CccceeeecCC
Confidence 443211 356899999998854 2 3569999998742 2334332 12223568999
Q ss_pred eEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecCCEEEEEEecCCeeEEEEEeCCCCceeeecccccc
Q 004766 315 VFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIG 394 (732)
Q Consensus 315 ~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~~l~~~~~~~g~~~l~~~d~~~g~~~~~l~~~~g 394 (732)
.||+....+ .++|+++++++.. .+.|+.. .+..+.+.. +.|++.....+ ..|+.++++ |...++|...
T Consensus 197 ~iy~t~~~~--~~~I~~~~ldG~~-~~~Lt~~----~~~~~~~~g-~~Iy~~~~~~~-~~i~~~~~D-G~~r~~l~~~-- 264 (302)
T 3s25_A 197 NVYYMDVNR--DNAIVHVNINNPN-PVVLTEA----NIEHYNVYG-SLIFYQRGGDN-PALCVVKND-GTGFKELAKG-- 264 (302)
T ss_dssp EEEEEEGGG--TTEEEEECSSSCC-CEECSCS----CEEEEEEET-TEEEEEECSSS-CEEEEEETT-SCCCEEEEES--
T ss_pred EEEEEEcCC--CcEEEEEECCCCC-eEEEeCC----CcceEEECC-CEEEEEECCCC-cEEEEEECC-CCccEEeeCC--
Confidence 999865432 2789999999876 4555432 245555554 78877654443 789999997 6544566532
Q ss_pred eeeEeecccCCcEEEEEEecCCCCceEEEEECCC
Q 004766 395 SVNAISARREDSVVFISFTSFLIPGIVYQCNLKT 428 (732)
Q Consensus 395 ~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~ 428 (732)
.+.. .+..++.++++ .+.+. .+++..+..
T Consensus 265 ~~~~--i~i~~d~Iy~t--d~~~~-~i~~~~~dG 293 (302)
T 3s25_A 265 EFCN--INVTSQYVYFT--DFVSN-KEYCTSTQN 293 (302)
T ss_dssp CEEE--EEECSSEEEEE--ETTTC-CEEEEESSS
T ss_pred ccce--EEEeCCEEEEE--ECCCC-eEEEEECCC
Confidence 2223 34467777765 43333 488887653
|
| >3b12_A Fluoroacetate dehalogenase; dehalogease, hydrolase; 1.20A {Burkholderia SP} PDB: 1y37_A | Back alignment and structure |
|---|
Probab=99.05 E-value=6.3e-14 Score=143.82 Aligned_cols=120 Identities=18% Similarity=0.110 Sum_probs=81.6
Q ss_pred CCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCc
Q 004766 460 DGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQ 539 (732)
Q Consensus 460 dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~ 539 (732)
+| .++.+... +..|+||++||..+... .|.. +...|. +||.|+++|+||.|.....-. ......
T Consensus 13 ~g-~~~~~~~~--------g~~p~vv~lHG~~~~~~--~~~~-~~~~l~-~g~~v~~~D~~G~G~s~~~~~---~~~~~~ 76 (304)
T 3b12_A 13 GD-VTINCVVG--------GSGPALLLLHGFPQNLH--MWAR-VAPLLA-NEYTVVCADLRGYGGSSKPVG---APDHAN 76 (304)
Confidence 67 67665432 35688999999877543 3333 345677 899999999999876433210 000122
Q ss_pred cHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCccc
Q 004766 540 NCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMD 597 (732)
Q Consensus 540 ~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d 597 (732)
.+++++.+.+..+++. .+.+++.++|+|+||.++..++.++|++++++|+..|...
T Consensus 77 ~~~~~~~~~l~~~l~~--l~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~ 132 (304)
T 3b12_A 77 YSFRAMASDQRELMRT--LGFERFHLVGHARGGRTGHRMALDHPDSVLSLAVLDIIPT 132 (304)
Confidence 3444454444444433 2346899999999999999999999999999998887654
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.35 E-value=9e-10 Score=114.49 Aligned_cols=247 Identities=10% Similarity=-0.003 Sum_probs=145.2
Q ss_pred eEEECCCCcEEEEEEeccCCceEEEEEEECCCCce-ecccccceeeee-EEEEeCCcEEEEEEecCCCCCCCCCCCCccc
Q 004766 136 KVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIV-EADALSWFKFSS-IAWTHDSKGFFYSRYPAPKEGKDMDAGTETD 213 (732)
Q Consensus 136 ~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~-~~~~~~~~~~~~-~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~ 213 (732)
.+.|||||++|+++.... ..|+++|+++++. ............ ++|+|||+.|+ +....
T Consensus 44 ~~~~s~dg~~l~~~~~~~----~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~-~~~~~-------------- 104 (331)
T 3u4y_A 44 DTAITSDCSNVVVTSDFC----QTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAV-TVTGL-------------- 104 (331)
T ss_dssp EEEECSSSCEEEEEESTT----CEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEE-ECCCS--------------
T ss_pred eEEEcCCCCEEEEEeCCC----CeEEEEECCCCceeEEecccCCCCccceEECCCCCEEE-EecCC--------------
Confidence 789999999877665322 3899999999885 322222222345 99999999988 42211
Q ss_pred CCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCCC
Q 004766 214 SNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLL 293 (732)
Q Consensus 214 ~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~ 293 (732)
.....|+++++.++... ..+.... ....++|||||++|++...... ..++++++..... +. ..
T Consensus 105 -~~~~~i~v~d~~~~~~~--~~~~~~~---~~~~~~~spdg~~l~~~~~~~~---~~i~~~~~~~~g~-~~-------~~ 167 (331)
T 3u4y_A 105 -NHPFNMQSYSFLKNKFI--STIPIPY---DAVGIAISPNGNGLILIDRSSA---NTVRRFKIDADGV-LF-------DT 167 (331)
T ss_dssp -SSSCEEEEEETTTTEEE--EEEECCT---TEEEEEECTTSSCEEEEEETTT---TEEEEEEECTTCC-EE-------EE
T ss_pred -CCcccEEEEECCCCCeE--EEEECCC---CccceEECCCCCEEEEEecCCC---ceEEEEEECCCCc-Ee-------ec
Confidence 12237999998765321 2222222 2357899999999877654322 2255555543110 00 00
Q ss_pred CcEEeeecccceEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCC---ceEeccCCCCCceeEEEEecCCE-EEEEEec
Q 004766 294 PFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPND---WFEVIPEAERDVLESATAVNLNQ-MIVSYLS 369 (732)
Q Consensus 294 ~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~---~~~l~~~~~~~~l~~~~~~~~~~-l~~~~~~ 369 (732)
....+..+.......|+|||+.+|+.... ...|..+|+++++. ... ++.. .....+.+++++. +++...
T Consensus 168 ~~~~~~~~~~~~~~~~spdg~~l~v~~~~---~~~v~v~d~~~~~~~~~~~~-~~~~--~~~~~~~~spdg~~l~v~~~- 240 (331)
T 3u4y_A 168 GQEFISGGTRPFNITFTPDGNFAFVANLI---GNSIGILETQNPENITLLNA-VGTN--NLPGTIVVSRDGSTVYVLTE- 240 (331)
T ss_dssp EEEEECSSSSEEEEEECTTSSEEEEEETT---TTEEEEEECSSTTSCEEEEE-EECS--SCCCCEEECTTSSEEEEECS-
T ss_pred CCccccCCCCccceEECCCCCEEEEEeCC---CCeEEEEECCCCcccceeee-ccCC--CCCceEEECCCCCEEEEEEc-
Confidence 00111112222233589999988876543 34788999987763 333 3332 4456788888655 554433
Q ss_pred CCeeEEEEEeCCCCce--eeecc----ccc---ceeeEeecccCCcEEEEEEecCCCCceEEEEECCCC
Q 004766 370 DVKYVLQIRDLKNGSL--LHQLP----IEI---GSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTE 429 (732)
Q Consensus 370 ~g~~~l~~~d~~~g~~--~~~l~----~~~---g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~ 429 (732)
+...|+++|+++|+. +..+. ... .....+.+++|++.++++... -..+..+|+.+.
T Consensus 241 -~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~---~~~v~v~d~~~~ 305 (331)
T 3u4y_A 241 -STVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANI---SRELKVFTISGK 305 (331)
T ss_dssp -SEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETT---TTEEEEEETTSC
T ss_pred -CCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCC---CCcEEEEEecCC
Confidence 346799999987765 12111 111 112346788999988765432 357888898755
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.35 E-value=3.4e-10 Score=121.91 Aligned_cols=242 Identities=12% Similarity=0.036 Sum_probs=157.8
Q ss_pred CEEEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecccc-cceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCC
Q 004766 131 TAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADAL-SWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAG 209 (732)
Q Consensus 131 ~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~-~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~ 209 (732)
...+..+.|||||++|+-.. ...+|+|||+++|+...... .......++|+|||+.|+....+.
T Consensus 108 ~~~V~~~~~~p~~~~l~s~s-----~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~---------- 172 (410)
T 1vyh_C 108 RSPVTRVIFHPVFSVMVSAS-----EDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADM---------- 172 (410)
T ss_dssp SSCEEEEEECSSSSEEEEEE-----SSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTS----------
T ss_pred CCcEEEEEEcCCCCEEEEEe-----CCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCC----------
Confidence 34577899999999887553 22479999999987543211 111347899999999887765433
Q ss_pred CcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCccccccc
Q 004766 210 TETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKR 289 (732)
Q Consensus 210 ~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~ 289 (732)
.|.+|++.+.. ++.....+...+..+.|+|+|++|+..+.+ ..+.++|+.++.
T Consensus 173 ---------~i~iwd~~~~~----~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D-----~~i~~wd~~~~~--------- 225 (410)
T 1vyh_C 173 ---------TIKLWDFQGFE----CIRTMHGHDHNVSSVSIMPNGDHIVSASRD-----KTIKMWEVQTGY--------- 225 (410)
T ss_dssp ---------CCCEEETTSSC----EEECCCCCSSCEEEEEECSSSSEEEEEETT-----SEEEEEETTTCC---------
T ss_pred ---------eEEEEeCCCCc----eeEEEcCCCCCEEEEEEeCCCCEEEEEeCC-----CeEEEEECCCCc---------
Confidence 46778876542 232222334456789999999998765533 348888987742
Q ss_pred CCCCCcEEeeecccce-EEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecC--------
Q 004766 290 DGLLPFVKLIDGFDAQ-YEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNL-------- 360 (732)
Q Consensus 290 ~~~~~~~~l~~~~~~~-~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~-------- 360 (732)
+...+....... ...++++|..|+..+.. ..|..+|+.++.....+..+. ..+..+.+.++
T Consensus 226 ----~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D----~~v~vwd~~~~~~~~~~~~h~--~~v~~~~~~~~~~~~~~~~ 295 (410)
T 1vyh_C 226 ----CVKTFTGHREWVRMVRPNQDGTLIASCSND----QTVRVWVVATKECKAELREHR--HVVECISWAPESSYSSISE 295 (410)
T ss_dssp ----EEEEEECCSSCEEEEEECTTSSEEEEEETT----SCEEEEETTTCCEEEEECCCS--SCEEEEEECCSCGGGGGGG
T ss_pred ----EEEEEeCCCccEEEEEECCCCCEEEEEcCC----CeEEEEECCCCceeeEecCCC--ceEEEEEEcCcccccchhh
Confidence 122332221111 12477888766654432 357888888776334444443 56777777763
Q ss_pred ------------CEEEEEEecCCeeEEEEEeCCCCceeeecccccceeeEeecccCCcEEEEEEecCCCCceEEEEECCC
Q 004766 361 ------------NQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKT 428 (732)
Q Consensus 361 ------------~~l~~~~~~~g~~~l~~~d~~~g~~~~~l~~~~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~ 428 (732)
+.++++...++ .|++||+.+|+.+..+..+...|..+.+++++..++ +.+. -..+..||+.+
T Consensus 296 ~~~~~~~~~~~~g~~l~sgs~D~--~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~-s~s~---D~~i~vwd~~~ 369 (410)
T 1vyh_C 296 ATGSETKKSGKPGPFLLSGSRDK--TIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFIL-SCAD---DKTLRVWDYKN 369 (410)
T ss_dssp CCSCC-------CCEEEEEETTS--EEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEE-EEET---TTEEEEECCTT
T ss_pred hccccccccCCCCCEEEEEeCCC--eEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEE-EEeC---CCeEEEEECCC
Confidence 34677777774 699999988887666665566788888899988655 3332 35788999877
Q ss_pred CC
Q 004766 429 ET 430 (732)
Q Consensus 429 ~~ 430 (732)
++
T Consensus 370 ~~ 371 (410)
T 1vyh_C 370 KR 371 (410)
T ss_dssp SC
T ss_pred Cc
Confidence 64
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=99.35 E-value=5.9e-10 Score=115.79 Aligned_cols=234 Identities=14% Similarity=0.005 Sum_probs=150.6
Q ss_pred EEEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCce--ec-ccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCC
Q 004766 132 AALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIV--EA-DALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDA 208 (732)
Q Consensus 132 ~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~--~~-~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~ 208 (732)
..+..+.|||||++|+.... ...|++||+.+++. .. ..........++|+||++.|+....+
T Consensus 98 ~~v~~~~~~~~~~~l~~~~~-----d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---------- 162 (337)
T 1gxr_A 98 NYIRSCKLLPDGCTLIVGGE-----ASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSD---------- 162 (337)
T ss_dssp SBEEEEEECTTSSEEEEEES-----SSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETT----------
T ss_pred CcEEEEEEcCCCCEEEEEcC-----CCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCC----------
Confidence 34778999999999987642 24799999998872 21 11111224789999999988877533
Q ss_pred CCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccc
Q 004766 209 GTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKK 288 (732)
Q Consensus 209 ~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~ 288 (732)
..|++|++.++. .+.....+......+.|+|||++|+....+ ..++++|+.++.
T Consensus 163 ---------g~v~~~d~~~~~----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~~~d~~~~~-------- 216 (337)
T 1gxr_A 163 ---------GNIAVWDLHNQT----LVRQFQGHTDGASCIDISNDGTKLWTGGLD-----NTVRSWDLREGR-------- 216 (337)
T ss_dssp ---------SCEEEEETTTTE----EEEEECCCSSCEEEEEECTTSSEEEEEETT-----SEEEEEETTTTE--------
T ss_pred ---------CcEEEEeCCCCc----eeeeeecccCceEEEEECCCCCEEEEEecC-----CcEEEEECCCCc--------
Confidence 258889987653 222222233456789999999998876532 348888987642
Q ss_pred cCCCCCcEEeeecccceEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecCCEEEEEEe
Q 004766 289 RDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYL 368 (732)
Q Consensus 289 ~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~~l~~~~~ 368 (732)
....+..........|+|+|+.+++.+.. ..|..+|+.++. ...+..+. ..+..+.+++++.+++...
T Consensus 217 -----~~~~~~~~~~v~~~~~s~~~~~l~~~~~~----~~i~~~~~~~~~-~~~~~~~~--~~v~~~~~~~~~~~l~~~~ 284 (337)
T 1gxr_A 217 -----QLQQHDFTSQIFSLGYCPTGEWLAVGMES----SNVEVLHVNKPD-KYQLHLHE--SCVLSLKFAYCGKWFVSTG 284 (337)
T ss_dssp -----EEEEEECSSCEEEEEECTTSSEEEEEETT----SCEEEEETTSSC-EEEECCCS--SCEEEEEECTTSSEEEEEE
T ss_pred -----eEeeecCCCceEEEEECCCCCEEEEEcCC----CcEEEEECCCCC-eEEEcCCc--cceeEEEECCCCCEEEEec
Confidence 11122111111223588999888765543 358889988776 34444443 5688899998767777777
Q ss_pred cCCeeEEEEEeCCCCceeeecccccceeeEeecccCCcEEEEEEecCCCCceEEEEE
Q 004766 369 SDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCN 425 (732)
Q Consensus 369 ~~g~~~l~~~d~~~g~~~~~l~~~~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d 425 (732)
.++ .|++|++.+++.+.... ....+..+.++++++.++.... -..++.|+
T Consensus 285 ~dg--~i~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~----dg~i~iw~ 334 (337)
T 1gxr_A 285 KDN--LLNAWRTPYGASIFQSK-ESSSVLSCDISVDDKYIVTGSG----DKKATVYE 334 (337)
T ss_dssp TTS--EEEEEETTTCCEEEEEE-CSSCEEEEEECTTSCEEEEEET----TSCEEEEE
T ss_pred CCC--cEEEEECCCCeEEEEec-CCCcEEEEEECCCCCEEEEecC----CCeEEEEE
Confidence 774 78999998777643322 3556778888999886654332 23455555
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.34 E-value=4.9e-10 Score=122.30 Aligned_cols=245 Identities=11% Similarity=0.087 Sum_probs=153.5
Q ss_pred EEEeEEECCCCcEEEEEEeccCCceEEEEEEECC--CCceeccc---ccceeeeeEEEEeCCcEEEEEEecCCCCCCCCC
Q 004766 133 ALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIE--DQIVEADA---LSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMD 207 (732)
Q Consensus 133 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~--~g~~~~~~---~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~ 207 (732)
.+..++|||||++|+++.+.+ ..|++||+. +++.+... ........++|+|||+.|+....
T Consensus 104 ~v~~~~~s~d~~~l~~~~~~d----g~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~---------- 169 (450)
T 2vdu_B 104 YIRNLRLTSDESRLIACADSD----KSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADK---------- 169 (450)
T ss_dssp CEEEEEECTTSSEEEEEEGGG----TEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEET----------
T ss_pred ceEEEEEcCCCCEEEEEECCC----CeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeC----------
Confidence 477899999999986665433 379999998 77654321 11123478999999999988753
Q ss_pred CCCcccCCcccEEEEEECCCCCCCC--eEEEecCCCCeeEEEeEEecC---CcEEEEEEecCCcceEEEEEEeCCCCCCC
Q 004766 208 AGTETDSNLYHEFYYHFLGTKQSED--ILCWKDPEHPKYIFSGHVTED---GQYLVMCIEENCDPVNKVYYCDLSALPEG 282 (732)
Q Consensus 208 ~~~~~~~~~~~~v~~~~lgt~~~~~--~~v~~~~~~~~~~~~~~~SpD---g~~l~~~~~~~~~~~~~l~~~d~~~~~~~ 282 (732)
...++.+++.++.... ...+.. +...+..+.|+|| |++|+....+ ..|+++|+.++.
T Consensus 170 ---------~g~v~~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~sp~~~~~~~l~s~~~d-----~~i~vwd~~~~~-- 231 (450)
T 2vdu_B 170 ---------FGDVYSIDINSIPEEKFTQEPILG--HVSMLTDVHLIKDSDGHQFIITSDRD-----EHIKISHYPQCF-- 231 (450)
T ss_dssp ---------TSEEEEEETTSCCCSSCCCCCSEE--CSSCEEEEEEEECTTSCEEEEEEETT-----SCEEEEEESCTT--
T ss_pred ---------CCcEEEEecCCcccccccceeeec--ccCceEEEEEcCCCCCCcEEEEEcCC-----CcEEEEECCCCc--
Confidence 2368889887654321 001111 2234668999999 8888766543 237788877632
Q ss_pred cccccccCCCCCcEEeeecccce--EEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccC--------------
Q 004766 283 LEGFKKRDGLLPFVKLIDGFDAQ--YEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPE-------------- 346 (732)
Q Consensus 283 ~~~~~~~~~~~~~~~l~~~~~~~--~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~-------------- 346 (732)
....+..+.... ...|+ +|+.|+..+. ...|..+|+.++.....+..+
T Consensus 232 -----------~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~----d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (450)
T 2vdu_B 232 -----------IVDKWLFGHKHFVSSICCG-KDYLLLSAGG----DDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAP 295 (450)
T ss_dssp -----------CEEEECCCCSSCEEEEEEC-STTEEEEEES----SSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC-
T ss_pred -----------eeeeeecCCCCceEEEEEC-CCCEEEEEeC----CCeEEEEECCCCcEeeeecchhhhhhhhhhccccc
Confidence 122222222221 22478 8887776543 347899999887633333210
Q ss_pred ---------CCCCceeEEEEecCCEEEEEEe-cCCeeEEEEEeC--CCC---ceeeecccccceeeEeecccCCcEEEEE
Q 004766 347 ---------AERDVLESATAVNLNQMIVSYL-SDVKYVLQIRDL--KNG---SLLHQLPIEIGSVNAISARREDSVVFIS 411 (732)
Q Consensus 347 ---------~~~~~l~~~~~~~~~~l~~~~~-~~g~~~l~~~d~--~~g---~~~~~l~~~~g~v~~~~~s~d~~~l~~~ 411 (732)
.....+..+.+++++.+++... .+ ..|++|++ .++ +.+..+..+ +.+..+.++++ .++++
T Consensus 296 ~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d--~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~--~~~v~ 370 (450)
T 2vdu_B 296 PRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEAT--KCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHND--EFQVT 370 (450)
T ss_dssp ---------CBCCCEEEEEECSSSSEEEEEETTC--SEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETT--EEEEE
T ss_pred ccccccccccceEEEEEEEEeCCCCEEEEEECCC--CeEEEEEeccCCCCceeeccEeccC-CceEEEEecCC--cEEEE
Confidence 1124577888887655554444 55 46888888 444 333444444 56777888773 57778
Q ss_pred EecCCCCc------eEEEEECCCCC
Q 004766 412 FTSFLIPG------IVYQCNLKTET 430 (732)
Q Consensus 412 ~ss~~~p~------~~y~~d~~~~~ 430 (732)
..+...|. .+|.++..+++
T Consensus 371 ~~~~~~~~~~~~~i~v~~~~~~~~~ 395 (450)
T 2vdu_B 371 LDNKESSGVQKNFAKFIEYNLNENS 395 (450)
T ss_dssp ECCTTCCSSCCCSEEEEEEETTTTE
T ss_pred EecccCCCCCCcceEEEEEEcCCCe
Confidence 88877775 89999887763
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=99.34 E-value=2.6e-10 Score=129.69 Aligned_cols=241 Identities=8% Similarity=-0.058 Sum_probs=155.1
Q ss_pred eEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecc-cccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccC
Q 004766 136 KVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEAD-ALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDS 214 (732)
Q Consensus 136 ~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~-~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~ 214 (732)
.+.|||||++||+.. +. .+++||+.+++.... .........++|||||+.|+....+
T Consensus 23 ~~~~spdg~~l~~~~---~~---~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d---------------- 80 (611)
T 1nr0_A 23 VLGNTPAGDKIQYCN---GT---SVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVH---------------- 80 (611)
T ss_dssp CCEECTTSSEEEEEE---TT---EEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETT----------------
T ss_pred EEeeCCCCCEEEeCC---CC---EEEEecCCCcccCeEecCCCCceEEEEECCCCcEEEEEeCC----------------
Confidence 567999999999874 22 789999987764321 1112234789999999999877543
Q ss_pred CcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCCCC
Q 004766 215 NLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLP 294 (732)
Q Consensus 215 ~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~ 294 (732)
..|.+|++.++... +......+...+..++|||||++|+....... ....++++|....
T Consensus 81 ---~~v~lWd~~~~~~~--~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~-~~~~v~~wd~~~~--------------- 139 (611)
T 1nr0_A 81 ---GNVRIWDTTQTTHI--LKTTIPVFSGPVKDISWDSESKRIAAVGEGRE-RFGHVFLFDTGTS--------------- 139 (611)
T ss_dssp ---SEEEEEESSSTTCC--EEEEEECSSSCEEEEEECTTSCEEEEEECCSS-CSEEEEETTTCCB---------------
T ss_pred ---CCEEEeECCCCcce--eeEeecccCCceEEEEECCCCCEEEEEECCCC-ceeEEEEeeCCCC---------------
Confidence 36889998654332 22222222345678999999999987664322 2356888774321
Q ss_pred cEEeeecccce-EEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecCCEEEEEEecCCee
Q 004766 295 FVKLIDGFDAQ-YEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKY 373 (732)
Q Consensus 295 ~~~l~~~~~~~-~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~~l~~~~~~~g~~ 373 (732)
...+....... ...|+|++...++....+ ..+..+|..+.+....+..+. ..+..+.+++++.++++...|+
T Consensus 140 ~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D---~~v~lwd~~~~~~~~~l~~H~--~~V~~v~fspdg~~las~s~D~-- 212 (611)
T 1nr0_A 140 NGNLTGQARAMNSVDFKPSRPFRIISGSDD---NTVAIFEGPPFKFKSTFGEHT--KFVHSVRYNPDGSLFASTGGDG-- 212 (611)
T ss_dssp CBCCCCCSSCEEEEEECSSSSCEEEEEETT---SCEEEEETTTBEEEEEECCCS--SCEEEEEECTTSSEEEEEETTS--
T ss_pred cceecCCCCCceEEEECCCCCeEEEEEeCC---CeEEEEECCCCeEeeeecccc--CceEEEEECCCCCEEEEEECCC--
Confidence 11122111111 224899887544443332 357777876654233444443 5688999998778888888885
Q ss_pred EEEEEeCCCCceeeecc-------cccceeeEeecccCCcEEEEEEecCCCCceEEEEECCCCC
Q 004766 374 VLQIRDLKNGSLLHQLP-------IEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 430 (732)
Q Consensus 374 ~l~~~d~~~g~~~~~l~-------~~~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~~ 430 (732)
.|++||+.+|+....+. .+.+.|..+.++|++..++ +.+. -..+..+|+.+++
T Consensus 213 ~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~-s~s~---D~~v~lWd~~~~~ 272 (611)
T 1nr0_A 213 TIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIA-SASA---DKTIKIWNVATLK 272 (611)
T ss_dssp CEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEE-EEET---TSEEEEEETTTTE
T ss_pred cEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEE-EEeC---CCeEEEEeCCCCc
Confidence 68899988787655553 2456788899999998654 3332 2578899998774
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.34 E-value=7.2e-10 Score=118.65 Aligned_cols=240 Identities=16% Similarity=0.072 Sum_probs=145.7
Q ss_pred EEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceeccccc-------------------ceeeeeEEEEeCCcEEEE
Q 004766 134 LIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALS-------------------WFKFSSIAWTHDSKGFFY 194 (732)
Q Consensus 134 ~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~~-------------------~~~~~~~~WspDg~~l~y 194 (732)
+..++|||||++||...+ ..+++|++.+|+.+..... ......++|+|||+.|+.
T Consensus 67 V~~v~fspdg~~la~g~~------~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s 140 (393)
T 1erj_A 67 VCCVKFSNDGEYLATGCN------KTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT 140 (393)
T ss_dssp CCEEEECTTSSEEEEECB------SCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred EEEEEECCCCCEEEEEcC------CcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEE
Confidence 458899999999997532 2688999998875321100 001367999999999887
Q ss_pred EEecCCCCCCCCCCCCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEE
Q 004766 195 SRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYC 274 (732)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~ 274 (732)
...+ ..|++|++.++.. +..+. .+...+..++|+|||++|+..+.+ ..+.++
T Consensus 141 ~~~d-------------------~~i~iwd~~~~~~--~~~~~--~h~~~v~~~~~~p~~~~l~s~s~d-----~~v~iw 192 (393)
T 1erj_A 141 GAED-------------------RLIRIWDIENRKI--VMILQ--GHEQDIYSLDYFPSGDKLVSGSGD-----RTVRIW 192 (393)
T ss_dssp EETT-------------------SCEEEEETTTTEE--EEEEC--CCSSCEEEEEECTTSSEEEEEETT-----SEEEEE
T ss_pred EcCC-------------------CeEEEEECCCCcE--EEEEc--cCCCCEEEEEEcCCCCEEEEecCC-----CcEEEE
Confidence 6533 3588999876531 22332 233456789999999998765533 347788
Q ss_pred eCCCCCCCcccccccCCCCCcEEeeecccceEEEEEe-cCCeEEEEeCCCCCCceEEEEeCCCCCCceEecc-----CCC
Q 004766 275 DLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIAN-DDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIP-----EAE 348 (732)
Q Consensus 275 d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~-dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~-----~~~ 348 (732)
|+.++.. ...+..........|+| +|+.|+..+. ...|..+|+.++.....+.. ...
T Consensus 193 d~~~~~~-------------~~~~~~~~~v~~~~~~~~~~~~l~~~s~----d~~v~iwd~~~~~~~~~~~~~~~~~~~h 255 (393)
T 1erj_A 193 DLRTGQC-------------SLTLSIEDGVTTVAVSPGDGKYIAAGSL----DRAVRVWDSETGFLVERLDSENESGTGH 255 (393)
T ss_dssp ETTTTEE-------------EEEEECSSCEEEEEECSTTCCEEEEEET----TSCEEEEETTTCCEEEEEC------CCC
T ss_pred ECCCCee-------------EEEEEcCCCcEEEEEECCCCCEEEEEcC----CCcEEEEECCCCcEEEeecccccCCCCC
Confidence 9877421 11222111112234788 6766665443 23577888887652233311 111
Q ss_pred CCceeEEEEecCCEEEEEEecCCeeEEEEEeCCCCcee------------eecccccceeeEeecccCCcEEEEEEecCC
Q 004766 349 RDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLL------------HQLPIEIGSVNAISARREDSVVFISFTSFL 416 (732)
Q Consensus 349 ~~~l~~~~~~~~~~l~~~~~~~g~~~l~~~d~~~g~~~------------~~l~~~~g~v~~~~~s~d~~~l~~~~ss~~ 416 (732)
...+..+.+++++.++++...++ .|.+||+.++... ..+..+...+..+.+++++..++ +.+.
T Consensus 256 ~~~v~~v~~~~~g~~l~s~s~d~--~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-sgs~-- 330 (393)
T 1erj_A 256 KDSVYSVVFTRDGQSVVSGSLDR--SVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYIL-SGSK-- 330 (393)
T ss_dssp SSCEEEEEECTTSSEEEEEETTS--EEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEE-EEET--
T ss_pred CCCEEEEEECCCCCEEEEEeCCC--EEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEE-EEeC--
Confidence 25678899998777778887774 6888888643221 11222234566777888887554 3332
Q ss_pred CCceEEEEECCCCC
Q 004766 417 IPGIVYQCNLKTET 430 (732)
Q Consensus 417 ~p~~~y~~d~~~~~ 430 (732)
-..++.+|+.+++
T Consensus 331 -D~~v~iwd~~~~~ 343 (393)
T 1erj_A 331 -DRGVLFWDKKSGN 343 (393)
T ss_dssp -TSEEEEEETTTCC
T ss_pred -CCeEEEEECCCCe
Confidence 3578999998875
|
| >3l80_A Putative uncharacterized protein SMU.1393C; alpha/beta hydrolase fold, carboxylesterase, Ser- hydrolase; 2.00A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.1e-12 Score=134.10 Aligned_cols=102 Identities=13% Similarity=0.110 Sum_probs=75.0
Q ss_pred ccEEEEEcCC--CCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCccHHHHHHHHHHHHHHcCCC
Q 004766 481 HPCLLYGYGG--FNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYT 558 (732)
Q Consensus 481 ~P~vv~~hG~--~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~ 558 (732)
.|+||++||. .+.. ..|.. +...|. +||.|+++|+||.|... .......+++++.+.+..+++.-
T Consensus 41 ~p~vv~lHG~G~~~~~--~~~~~-~~~~L~-~~~~vi~~D~~G~G~S~-------~~~~~~~~~~~~~~~l~~~l~~~-- 107 (292)
T 3l80_A 41 NPCFVFLSGAGFFSTA--DNFAN-IIDKLP-DSIGILTIDAPNSGYSP-------VSNQANVGLRDWVNAILMIFEHF-- 107 (292)
T ss_dssp SSEEEEECCSSSCCHH--HHTHH-HHTTSC-TTSEEEEECCTTSTTSC-------CCCCTTCCHHHHHHHHHHHHHHS--
T ss_pred CCEEEEEcCCCCCcHH--HHHHH-HHHHHh-hcCeEEEEcCCCCCCCC-------CCCcccccHHHHHHHHHHHHHHh--
Confidence 4899999973 2221 13332 345566 79999999999988643 11223356788887777777652
Q ss_pred CCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCc
Q 004766 559 QSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGV 595 (732)
Q Consensus 559 d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~ 595 (732)
..+++.++|+|+||.++..++.++|++++++|+..|.
T Consensus 108 ~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~ 144 (292)
T 3l80_A 108 KFQSYLLCVHSIGGFAALQIMNQSSKACLGFIGLEPT 144 (292)
T ss_dssp CCSEEEEEEETTHHHHHHHHHHHCSSEEEEEEEESCC
T ss_pred CCCCeEEEEEchhHHHHHHHHHhCchheeeEEEECCC
Confidence 3458999999999999999999999999999988853
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.3e-09 Score=118.04 Aligned_cols=245 Identities=11% Similarity=0.009 Sum_probs=156.1
Q ss_pred CEEEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecccc-cceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCC
Q 004766 131 TAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADAL-SWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAG 209 (732)
Q Consensus 131 ~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~-~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~ 209 (732)
...+..+.|+|||+.++-.. ....|++||+++++.+.... .......++|+|||+.++++..
T Consensus 169 ~~~v~~~~~~~~~~~~~s~~-----~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------------ 231 (433)
T 3bws_A 169 LGFVETISIPEHNELWVSQM-----QANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNW------------ 231 (433)
T ss_dssp CCEEEEEEEGGGTEEEEEEG-----GGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEET------------
T ss_pred CCceeEEEEcCCCEEEEEEC-----CCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEec------------
Confidence 34577889999998665432 22479999999987543221 1223478999999998887742
Q ss_pred CcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCc---ceEEEEEEeCCCCCCCcccc
Q 004766 210 TETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCD---PVNKVYYCDLSALPEGLEGF 286 (732)
Q Consensus 210 ~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~---~~~~l~~~d~~~~~~~~~~~ 286 (732)
....|++|++.++. .+..... ......++|+|||++|++....... ....|+++|+.++.
T Consensus 232 ------~~~~i~~~d~~~~~----~~~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~------ 294 (433)
T 3bws_A 232 ------ISEDISVIDRKTKL----EIRKTDK-IGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEK------ 294 (433)
T ss_dssp ------TTTEEEEEETTTTE----EEEECCC-CSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTE------
T ss_pred ------CCCcEEEEECCCCc----EEEEecC-CCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCc------
Confidence 23468999987653 2222222 2345689999999999877643321 14579999988642
Q ss_pred cccCCCCCcEEeee-cccceEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecCCE-EE
Q 004766 287 KKRDGLLPFVKLID-GFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQ-MI 364 (732)
Q Consensus 287 ~~~~~~~~~~~l~~-~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~~-l~ 364 (732)
...... ........|+|+|+.+++.... ...|..+|+.+++ ....++.. ..+..+.+++++. ++
T Consensus 295 --------~~~~~~~~~~~~~~~~~~~g~~l~~~~~~---~~~v~v~d~~~~~-~~~~~~~~--~~~~~~~~s~dg~~l~ 360 (433)
T 3bws_A 295 --------LIDTIGPPGNKRHIVSGNTENKIYVSDMC---CSKIEVYDLKEKK-VQKSIPVF--DKPNTIALSPDGKYLY 360 (433)
T ss_dssp --------EEEEEEEEECEEEEEECSSTTEEEEEETT---TTEEEEEETTTTE-EEEEEECS--SSEEEEEECTTSSEEE
T ss_pred --------EEeeccCCCCcceEEECCCCCEEEEEecC---CCEEEEEECCCCc-EEEEecCC--CCCCeEEEcCCCCEEE
Confidence 111221 1112223589999888876554 3479999998765 23334433 4567889988654 55
Q ss_pred EEEecCCe------------eEEEEEeCCCCceeeecccccceeeEeecccCCcEEEEEEecCCCCceEEEEECC
Q 004766 365 VSYLSDVK------------YVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLK 427 (732)
Q Consensus 365 ~~~~~~g~------------~~l~~~d~~~g~~~~~l~~~~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~ 427 (732)
+....+.. ..|++||+.+++.+..+.. ...+..+.++++++.++++.+. -..++.|++.
T Consensus 361 ~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~---d~~i~v~~~~ 431 (433)
T 3bws_A 361 VSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA-GNQPTGLDVSPDNRYLVISDFL---DHQIRVYRRD 431 (433)
T ss_dssp EEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSCEEEEEETT---TTEEEEEEET
T ss_pred EEecCCCccccccccccccceEEEEEECCCCcEEEEecC-CCCCceEEEcCCCCEEEEEECC---CCeEEEEEec
Confidence 55443321 3899999988877555553 3456678889999877654321 2467676653
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.33 E-value=6e-10 Score=115.86 Aligned_cols=242 Identities=12% Similarity=0.078 Sum_probs=144.9
Q ss_pred EEECCCCcEEEEEEeccCCceEEEEEEECCCCceeccc-ccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCC
Q 004766 137 VSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADA-LSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSN 215 (732)
Q Consensus 137 ~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~-~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~ 215 (732)
..++++++++..+...+ .+|+++|+++|+.+... ...... .++|+|||+.|+++..
T Consensus 3 ~~~~~~~~~~~v~~~~~----~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~------------------ 59 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHL----RRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSD------------------ 59 (331)
T ss_dssp ----CCCCEEEEEEGGG----TEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEES------------------
T ss_pred eeEcCCCCEEEEEecCC----CeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeC------------------
Confidence 45778887666554322 38999999999864322 222233 8999999998887753
Q ss_pred cccEEEEEECCCCCCCCeEEEecCCCCeeEEE-eEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCCCC
Q 004766 216 LYHEFYYHFLGTKQSEDILCWKDPEHPKYIFS-GHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLP 294 (732)
Q Consensus 216 ~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~-~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~ 294 (732)
....|+.+++.++... .........+ .. +++||||++|+ ...... ....|+++|+.++. .
T Consensus 60 ~~~~i~~~d~~~~~~~-~~~~~~~~~~---~~~~~~s~dg~~l~-~~~~~~-~~~~i~v~d~~~~~-------------~ 120 (331)
T 3u4y_A 60 FCQTLVQIETQLEPPK-VVAIQEGQSS---MADVDITPDDQFAV-TVTGLN-HPFNMQSYSFLKNK-------------F 120 (331)
T ss_dssp TTCEEEEEECSSSSCE-EEEEEECSSC---CCCEEECTTSSEEE-ECCCSS-SSCEEEEEETTTTE-------------E
T ss_pred CCCeEEEEECCCCcee-EEecccCCCC---ccceEECCCCCEEE-EecCCC-CcccEEEEECCCCC-------------e
Confidence 2237999999876431 1222222222 24 88999999998 332221 12379999988742 1
Q ss_pred cEEeeecccceEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCc----eEeccCCCCCceeEEEEecCCE-EEEEEec
Q 004766 295 FVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDW----FEVIPEAERDVLESATAVNLNQ-MIVSYLS 369 (732)
Q Consensus 295 ~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~----~~l~~~~~~~~l~~~~~~~~~~-l~~~~~~ 369 (732)
...+..+.......|+|||+.+|+....+. . .|..++++..... ..+++.. .....+.+++++. +++....
T Consensus 121 ~~~~~~~~~~~~~~~spdg~~l~~~~~~~~-~-~i~~~~~~~~g~~~~~~~~~~~~~--~~~~~~~~spdg~~l~v~~~~ 196 (331)
T 3u4y_A 121 ISTIPIPYDAVGIAISPNGNGLILIDRSSA-N-TVRRFKIDADGVLFDTGQEFISGG--TRPFNITFTPDGNFAFVANLI 196 (331)
T ss_dssp EEEEECCTTEEEEEECTTSSCEEEEEETTT-T-EEEEEEECTTCCEEEEEEEEECSS--SSEEEEEECTTSSEEEEEETT
T ss_pred EEEEECCCCccceEECCCCCEEEEEecCCC-c-eEEEEEECCCCcEeecCCccccCC--CCccceEECCCCCEEEEEeCC
Confidence 222222222233469999998876654322 2 1444554433211 2223322 3467788888654 6666554
Q ss_pred CCeeEEEEEeCCCCce---eeecccccceeeEeecccCCcEEEEEEecCCCCceEEEEECCCCC
Q 004766 370 DVKYVLQIRDLKNGSL---LHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 430 (732)
Q Consensus 370 ~g~~~l~~~d~~~g~~---~~~l~~~~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~~ 430 (732)
+ ..|++||+++++. +..+..+ ..+..+.+++|++.++++.. ....++.+|+.+++
T Consensus 197 ~--~~v~v~d~~~~~~~~~~~~~~~~-~~~~~~~~spdg~~l~v~~~---~~~~i~~~d~~~~~ 254 (331)
T 3u4y_A 197 G--NSIGILETQNPENITLLNAVGTN-NLPGTIVVSRDGSTVYVLTE---STVDVFNFNQLSGT 254 (331)
T ss_dssp T--TEEEEEECSSTTSCEEEEEEECS-SCCCCEEECTTSSEEEEECS---SEEEEEEEETTTTE
T ss_pred C--CeEEEEECCCCcccceeeeccCC-CCCceEEECCCCCEEEEEEc---CCCEEEEEECCCCc
Confidence 4 4799999988876 4555432 34456788999997776533 34569999998884
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=99.33 E-value=3.2e-09 Score=109.43 Aligned_cols=226 Identities=13% Similarity=0.065 Sum_probs=144.9
Q ss_pred EEEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecccc-cceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCC
Q 004766 132 AALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADAL-SWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGT 210 (732)
Q Consensus 132 ~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~-~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~ 210 (732)
..+..+.|||||++|+.... ...|++||+.+++.+.... .......++|+||++.|+....+
T Consensus 66 ~~v~~~~~~~~~~~l~s~~~-----d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d------------ 128 (312)
T 4ery_A 66 LGISDVAWSSDSNLLVSASD-----DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD------------ 128 (312)
T ss_dssp SCEEEEEECTTSSEEEEEET-----TSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETT------------
T ss_pred CceEEEEEcCCCCEEEEECC-----CCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCC------------
Confidence 34778999999999886642 2479999999988543221 11224678999999988876533
Q ss_pred cccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccC
Q 004766 211 ETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRD 290 (732)
Q Consensus 211 ~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~ 290 (732)
..|++|++.++.. +.....+...+..+.|+|||++|+....++ .|.++|+.++.
T Consensus 129 -------~~i~iwd~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-----~i~~wd~~~~~---------- 182 (312)
T 4ery_A 129 -------ESVRIWDVKTGKC----LKTLPAHSDPVSAVHFNRDGSLIVSSSYDG-----LCRIWDTASGQ---------- 182 (312)
T ss_dssp -------SCEEEEETTTCCE----EEEECCCSSCEEEEEECTTSSEEEEEETTS-----CEEEEETTTCC----------
T ss_pred -------CcEEEEECCCCEE----EEEecCCCCcEEEEEEcCCCCEEEEEeCCC-----cEEEEECCCCc----------
Confidence 3588999876532 222222333466899999999987665433 37888987642
Q ss_pred CCCCcEEeeecccc--eEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEe-cCCEEEEEE
Q 004766 291 GLLPFVKLIDGFDA--QYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAV-NLNQMIVSY 367 (732)
Q Consensus 291 ~~~~~~~l~~~~~~--~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~-~~~~l~~~~ 367 (732)
....+...... ....|+|+|+.|+..+. ...|..+|+.++.....+..+..........+. +++.++++.
T Consensus 183 ---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg 255 (312)
T 4ery_A 183 ---CLKTLIDDDNPPVSFVKFSPNGKYILAATL----DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 255 (312)
T ss_dssp ---EEEEECCSSCCCEEEEEECTTSSEEEEEET----TTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEEC
T ss_pred ---eeeEEeccCCCceEEEEECCCCCEEEEEcC----CCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEE
Confidence 12222222221 12358999988776544 346888998877633444443322211122333 346677777
Q ss_pred ecCCeeEEEEEeCCCCceeeecccccceeeEeecccCCcEEE
Q 004766 368 LSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVF 409 (732)
Q Consensus 368 ~~~g~~~l~~~d~~~g~~~~~l~~~~g~v~~~~~s~d~~~l~ 409 (732)
..++ .|++||+.+++.+..+..+...+..+.++|+++.++
T Consensus 256 ~~dg--~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~ 295 (312)
T 4ery_A 256 SEDN--LVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIA 295 (312)
T ss_dssp CTTS--CEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEE
T ss_pred CCCC--EEEEEECCCchhhhhhhccCCcEEEEeecCcCCceE
Confidence 7774 689999988877677766666677888899888654
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=1.8e-09 Score=120.48 Aligned_cols=287 Identities=11% Similarity=0.059 Sum_probs=164.8
Q ss_pred EEeEEECCCCcEEEEEEeccCCceEEEEEEEC--CCCceecccccceeeeeEEEEe----CCcEEEEEEecCCCCCCCCC
Q 004766 134 LIKVSVSEDAKYLAYALSYSGSDWATIKLMRI--EDQIVEADALSWFKFSSIAWTH----DSKGFFYSRYPAPKEGKDMD 207 (732)
Q Consensus 134 ~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl--~~g~~~~~~~~~~~~~~~~Wsp----Dg~~l~y~~~~~~~~~~~~~ 207 (732)
...+.+||||++|+.+. .+ .+|++||+ .+++.+.....+....+++||| ||++|+....
T Consensus 181 ~~~v~~spdg~~l~v~~-~d----~~V~v~D~~~~t~~~~~~i~~g~~p~~va~sp~~~~dg~~l~v~~~---------- 245 (543)
T 1nir_A 181 VHISRMSASGRYLLVIG-RD----ARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAY---------- 245 (543)
T ss_dssp EEEEEECTTSCEEEEEE-TT----SEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEE----------
T ss_pred cceEEECCCCCEEEEEC-CC----CeEEEEECcCCCCcEEEEEecCCCcceEEeCCCcCCCCCEEEEEEc----------
Confidence 45788999999886553 22 37999999 7887554322233347899999 9999887643
Q ss_pred CCCcccCCcccEEEEEECCCCCCCCeEEEecC----C-----CCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCC
Q 004766 208 AGTETDSNLYHEFYYHFLGTKQSEDILCWKDP----E-----HPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSA 278 (732)
Q Consensus 208 ~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~----~-----~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~ 278 (732)
.+..|.+++..+..... .+... + .......+.+|||++.+++.... ...|+++|..+
T Consensus 246 --------~~~~v~v~D~~t~~~~~--~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~----~g~i~vvd~~~ 311 (543)
T 1nir_A 246 --------WPPQFAIMDGETLEPKQ--IVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE----TGKVLLVNYKD 311 (543)
T ss_dssp --------ESSEEEEEETTTCCEEE--EEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETT----TTEEEEEECTT
T ss_pred --------cCCeEEEEeccccccce--eecccCcccCccccccCCceEEEEECCCCCEEEEEECC----CCeEEEEEecC
Confidence 23467788877654221 11110 0 01134578899999988766532 35699999876
Q ss_pred CCCCcccccccCCCCCcEEeeecccceEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCC-CCceeEEE-
Q 004766 279 LPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAE-RDVLESAT- 356 (732)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~-~~~l~~~~- 356 (732)
... .....+..+....-..|+|||++|+...+. ...|.++|+++++ ....++... .+.-.++.
T Consensus 312 ~~~-----------l~~~~i~~~~~~~~~~~spdg~~l~va~~~---~~~v~v~D~~tg~-l~~~i~~g~~ph~g~g~~~ 376 (543)
T 1nir_A 312 IDN-----------LTVTSIGAAPFLHDGGWDSSHRYFMTAANN---SNKVAVIDSKDRR-LSALVDVGKTPHPGRGANF 376 (543)
T ss_dssp SSS-----------CEEEEEECCSSCCCEEECTTSCEEEEEEGG---GTEEEEEETTTTE-EEEEEECSSSBCCTTCEEE
T ss_pred CCc-----------ceeEEeccCcCccCceECCCCCEEEEEecC---CCeEEEEECCCCe-EEEeeccCCCCCCCCCccc
Confidence 321 001122111111123589999988765543 2368889998876 232232110 01101222
Q ss_pred EecC-CEEEEEEecCCeeEEEEEeCCC-------CceeeecccccceeeEeecccCCcEEEEEEecCCCC-----ceEEE
Q 004766 357 AVNL-NQMIVSYLSDVKYVLQIRDLKN-------GSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIP-----GIVYQ 423 (732)
Q Consensus 357 ~~~~-~~l~~~~~~~g~~~l~~~d~~~-------g~~~~~l~~~~g~v~~~~~s~d~~~l~~~~ss~~~p-----~~~y~ 423 (732)
+.++ +.++++.. .+...|.+||.++ ++.++.|..+.+.+..+.++|+++.|++.. ...| .++.+
T Consensus 377 ~~p~~g~~~~s~~-~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~--~~~~~~~~~~~v~v 453 (543)
T 1nir_A 377 VHPKYGPVWSTSH-LGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDT--TFNPDARISQSVAV 453 (543)
T ss_dssp EETTTEEEEEEEB-SSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECC--TTCSSHHHHTCEEE
T ss_pred CCCCCccEEEecc-CCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEec--CCCCCcccCceEEE
Confidence 2444 45655543 2335799999987 666677776544444678899999887532 2233 48999
Q ss_pred EECCCCCCceEEEEeecCCCCCCCCceEEEEEEEccCCCeeEEEEE
Q 004766 424 CNLKTETPEMKIFRETIIPGFDRSEFHVHQVFVPSKDGSTKIPMFI 469 (732)
Q Consensus 424 ~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~s~dG~~~i~~~~ 469 (732)
+|..+++...+.+.-....++....-.+..+.| ++|| .+|-...
T Consensus 454 ~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~g-~~~~~s~ 497 (543)
T 1nir_A 454 FDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEY-NKRG-DEVWFSV 497 (543)
T ss_dssp EETTCTTSCCEEECHHHHHCCCSSCCEEEEEEE-CSSS-SEEEEEE
T ss_pred EECCCCCCCeEEeechhhcccCCCCCceEeccC-CCCC-CEEEEEe
Confidence 999988632233321111112221224455555 4677 6665443
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=99.32 E-value=1.8e-09 Score=111.35 Aligned_cols=242 Identities=16% Similarity=0.119 Sum_probs=151.3
Q ss_pred EEEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceeccc-ccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCC
Q 004766 132 AALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADA-LSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGT 210 (732)
Q Consensus 132 ~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~-~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~ 210 (732)
..+..+.|||||++||.... + ..|++||+.+++..... ........++|+||++.|+....+
T Consensus 24 ~~v~~~~~s~~~~~l~s~~~-d----g~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d------------ 86 (312)
T 4ery_A 24 KAVSSVKFSPNGEWLASSSA-D----KLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDD------------ 86 (312)
T ss_dssp SCEEEEEECTTSSEEEEEET-T----SCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETT------------
T ss_pred CcEEEEEECCCCCEEEEeeC-C----CeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCC------------
Confidence 34678999999999886642 2 37999999988754321 122235789999999988877533
Q ss_pred cccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccC
Q 004766 211 ETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRD 290 (732)
Q Consensus 211 ~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~ 290 (732)
..|.+|++.++.. +..+.. +...+..+.|+|++++|+....++ .+.++|+.++.
T Consensus 87 -------~~i~vwd~~~~~~--~~~~~~--~~~~v~~~~~~~~~~~l~s~~~d~-----~i~iwd~~~~~---------- 140 (312)
T 4ery_A 87 -------KTLKIWDVSSGKC--LKTLKG--HSNYVFCCNFNPQSNLIVSGSFDE-----SVRIWDVKTGK---------- 140 (312)
T ss_dssp -------SEEEEEETTTCCE--EEEEEC--CSSCEEEEEECSSSSEEEEEETTS-----CEEEEETTTCC----------
T ss_pred -------CEEEEEECCCCcE--EEEEcC--CCCCEEEEEEcCCCCEEEEEeCCC-----cEEEEECCCCE----------
Confidence 3688999876542 222322 234566889999999987665433 38888987642
Q ss_pred CCCCcEEeeecccce-EEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecCCEEEEEEec
Q 004766 291 GLLPFVKLIDGFDAQ-YEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLS 369 (732)
Q Consensus 291 ~~~~~~~l~~~~~~~-~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~~l~~~~~~ 369 (732)
....+....... ...|+|+|+.|+..+.. ..|..+|+.++.....+.... ...+..+.+++++..++....
T Consensus 141 ---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----~~i~~wd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~ 212 (312)
T 4ery_A 141 ---CLKTLPAHSDPVSAVHFNRDGSLIVSSSYD----GLCRIWDTASGQCLKTLIDDD-NPPVSFVKFSPNGKYILAATL 212 (312)
T ss_dssp ---EEEEECCCSSCEEEEEECTTSSEEEEEETT----SCEEEEETTTCCEEEEECCSS-CCCEEEEEECTTSSEEEEEET
T ss_pred ---EEEEecCCCCcEEEEEEcCCCCEEEEEeCC----CcEEEEECCCCceeeEEeccC-CCceEEEEECCCCCEEEEEcC
Confidence 122222221111 22488988877654432 368889998776334443332 356777888887667777777
Q ss_pred CCeeEEEEEeCCCCceeeeccccccee--eEeecc-cCCcEEEEEEecCCCCceEEEEECCCCC
Q 004766 370 DVKYVLQIRDLKNGSLLHQLPIEIGSV--NAISAR-REDSVVFISFTSFLIPGIVYQCNLKTET 430 (732)
Q Consensus 370 ~g~~~l~~~d~~~g~~~~~l~~~~g~v--~~~~~s-~d~~~l~~~~ss~~~p~~~y~~d~~~~~ 430 (732)
++ .|.+||+.+++.+..+..+.... ....++ +++. ++++.+ .-..++.+|+.+++
T Consensus 213 d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~sg~---~dg~i~vwd~~~~~ 270 (312)
T 4ery_A 213 DN--TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGK-WIVSGS---EDNLVYIWNLQTKE 270 (312)
T ss_dssp TT--EEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSC-EEEECC---TTSCEEEEETTTCC
T ss_pred CC--eEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCc-EEEEEC---CCCEEEEEECCCch
Confidence 74 78999998887655554332111 111222 3444 333322 34578899988774
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=99.32 E-value=5.7e-10 Score=131.41 Aligned_cols=242 Identities=11% Similarity=0.057 Sum_probs=159.8
Q ss_pred EEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceeccc-ccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCc
Q 004766 133 ALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADA-LSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTE 211 (732)
Q Consensus 133 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~-~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~ 211 (732)
.+..++|||||++||.... + ..|+|||+.+|+.+... ........++|+|||+.|+....+
T Consensus 15 ~v~~i~~sp~~~~la~~~~-~----g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d------------- 76 (814)
T 3mkq_A 15 RVKGIDFHPTEPWVLTTLY-S----GRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDD------------- 76 (814)
T ss_dssp CEEEEEECSSSSEEEEEET-T----SEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETT-------------
T ss_pred ceEEEEECCCCCEEEEEeC-C----CEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCC-------------
Confidence 3678999999999998752 2 37999999998754322 122235789999999999987532
Q ss_pred ccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCC
Q 004766 212 TDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDG 291 (732)
Q Consensus 212 ~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 291 (732)
..|.+|++.++.. +..+. .+...+..++|+|||++|+....+ ..+.++++.++.
T Consensus 77 ------g~i~vw~~~~~~~--~~~~~--~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~vw~~~~~~----------- 130 (814)
T 3mkq_A 77 ------FRIRVFNYNTGEK--VVDFE--AHPDYIRSIAVHPTKPYVLSGSDD-----LTVKLWNWENNW----------- 130 (814)
T ss_dssp ------SEEEEEETTTCCE--EEEEE--CCSSCEEEEEECSSSSEEEEEETT-----SEEEEEEGGGTS-----------
T ss_pred ------CeEEEEECCCCcE--EEEEe--cCCCCEEEEEEeCCCCEEEEEcCC-----CEEEEEECCCCc-----------
Confidence 3689999877642 22232 233456789999999998865532 347778877631
Q ss_pred CCCcEEeeecccce-EEEEEe-cCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEec--CCEEEEEE
Q 004766 292 LLPFVKLIDGFDAQ-YEVIAN-DDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVN--LNQMIVSY 367 (732)
Q Consensus 292 ~~~~~~l~~~~~~~-~~~~s~-dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~--~~~l~~~~ 367 (732)
.....+....... ...|+| +++.|+..+. ...|..+|+.++.....+..+. ...+..+.+++ ++.+++..
T Consensus 131 -~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~----dg~v~vwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~l~~~ 204 (814)
T 3mkq_A 131 -ALEQTFEGHEHFVMCVAFNPKDPSTFASGCL----DRTVKVWSLGQSTPNFTLTTGQ-ERGVNYVDYYPLPDKPYMITA 204 (814)
T ss_dssp -EEEEEEECCSSCEEEEEEETTEEEEEEEEET----TSEEEEEETTCSSCSEEEECCC-TTCCCEEEECCSTTCCEEEEE
T ss_pred -eEEEEEcCCCCcEEEEEEEcCCCCEEEEEeC----CCeEEEEECCCCcceeEEecCC-CCCEEEEEEEECCCCCEEEEE
Confidence 1112222211111 235888 6666665443 2468889987765333343332 24567778876 56677777
Q ss_pred ecCCeeEEEEEeCCCCceeeecccccceeeEeecccCCcEEEEEEecCCCCceEEEEECCCCC
Q 004766 368 LSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 430 (732)
Q Consensus 368 ~~~g~~~l~~~d~~~g~~~~~l~~~~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~~ 430 (732)
..++ .|.+||+.+++.+..+..+.+.+..+.++++++.++... . -..++.+|+.+++
T Consensus 205 ~~dg--~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~---dg~v~vwd~~~~~ 261 (814)
T 3mkq_A 205 SDDL--TIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGS-E---DGTLKIWNSSTYK 261 (814)
T ss_dssp CTTS--EEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEE-T---TSCEEEEETTTCS
T ss_pred eCCC--EEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEe-C---CCeEEEEECCCCc
Confidence 7774 789999988877666665566788888999998655432 2 2568899988774
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.31 E-value=3.8e-10 Score=117.20 Aligned_cols=241 Identities=16% Similarity=0.048 Sum_probs=152.9
Q ss_pred EEEEeEEECCC----CcEEEEEEeccCCceEEEEEEECCCCcee-cccc--cceeeeeEEEEeCCcEEEEEEecCCCCCC
Q 004766 132 AALIKVSVSED----AKYLAYALSYSGSDWATIKLMRIEDQIVE-ADAL--SWFKFSSIAWTHDSKGFFYSRYPAPKEGK 204 (732)
Q Consensus 132 ~~~~~~~~SPD----G~~la~~~~~~G~e~~~i~v~dl~~g~~~-~~~~--~~~~~~~~~WspDg~~l~y~~~~~~~~~~ 204 (732)
-.+..++|||+ +++|+-. + ...+|+|||+.+++.. .... .......++|+|+++.++....+
T Consensus 33 ~~V~~v~~~~~~~~~~~~l~tg-s----~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D------ 101 (321)
T 3ow8_A 33 DAIWSVAWGTNKKENSETVVTG-S----LDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLD------ 101 (321)
T ss_dssp SCEEEEEEC-------CEEEEE-E----TTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETT------
T ss_pred CcEEEEEEecCCCCCCCEEEEE-c----CCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCC------
Confidence 34678899986 4556533 2 2247899998877532 1111 11234788999999877766433
Q ss_pred CCCCCCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcc
Q 004766 205 DMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLE 284 (732)
Q Consensus 205 ~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~ 284 (732)
..|.+|++.++.. +..+... ......++|+|||++|+....+ ..+.++++.++.
T Consensus 102 -------------~~i~lWd~~~~~~--~~~~~~~--~~~~~~~~~spdg~~l~~g~~d-----g~v~i~~~~~~~---- 155 (321)
T 3ow8_A 102 -------------AHIRLWDLENGKQ--IKSIDAG--PVDAWTLAFSPDSQYLATGTHV-----GKVNIFGVESGK---- 155 (321)
T ss_dssp -------------SEEEEEETTTTEE--EEEEECC--TTCCCCEEECTTSSEEEEECTT-----SEEEEEETTTCS----
T ss_pred -------------CcEEEEECCCCCE--EEEEeCC--CccEEEEEECCCCCEEEEEcCC-----CcEEEEEcCCCc----
Confidence 3689999876532 1222222 2233468999999998765432 347888887642
Q ss_pred cccccCCCCCcEEeeecccc-eEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecCCEE
Q 004766 285 GFKKRDGLLPFVKLIDGFDA-QYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQM 363 (732)
Q Consensus 285 ~~~~~~~~~~~~~l~~~~~~-~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~~l 363 (732)
....+...... ....|+|+|+.|+..+.. ..|..+|+.+++....+..+. ..+..+.+++++.+
T Consensus 156 ---------~~~~~~~~~~~v~~~~~spdg~~lasg~~d----g~i~iwd~~~~~~~~~~~~h~--~~v~~l~~spd~~~ 220 (321)
T 3ow8_A 156 ---------KEYSLDTRGKFILSIAYSPDGKYLASGAID----GIINIFDIATGKLLHTLEGHA--MPIRSLTFSPDSQL 220 (321)
T ss_dssp ---------EEEEEECSSSCEEEEEECTTSSEEEEEETT----SCEEEEETTTTEEEEEECCCS--SCCCEEEECTTSCE
T ss_pred ---------eeEEecCCCceEEEEEECCCCCEEEEEcCC----CeEEEEECCCCcEEEEEcccC--CceeEEEEcCCCCE
Confidence 11222221111 123589999887765443 358888998876334443333 56788999987778
Q ss_pred EEEEecCCeeEEEEEeCCCCceeeecccccceeeEeecccCCcEEEEEEecCCCCceEEEEECCCCC
Q 004766 364 IVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 430 (732)
Q Consensus 364 ~~~~~~~g~~~l~~~d~~~g~~~~~l~~~~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~~ 430 (732)
+++...++ .|++||+.+++....+..+...+..+.++|++..++ +.+. -..+..+|+.+++
T Consensus 221 l~s~s~dg--~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~-s~s~---D~~v~iwd~~~~~ 281 (321)
T 3ow8_A 221 LVTASDDG--YIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFV-SSSS---DKSVKVWDVGTRT 281 (321)
T ss_dssp EEEECTTS--CEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEE-EEET---TSCEEEEETTTTE
T ss_pred EEEEcCCC--eEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEE-EEeC---CCcEEEEeCCCCE
Confidence 88887774 688999987776666665566788889999988654 3333 2468899988774
|
| >3qmv_A Thioesterase, REDJ; alpha/beta hydrolase fold, hydrolase; 2.12A {Streptomyces coelicolor} PDB: 3qmw_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=1.5e-12 Score=132.55 Aligned_cols=187 Identities=12% Similarity=-0.027 Sum_probs=107.7
Q ss_pred cEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCccHHHHHHHHHHHHHHcCCCCCC
Q 004766 482 PCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSR 561 (732)
Q Consensus 482 P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ 561 (732)
|.||++||..+... .|.. +...|. .||.|+++|+||.|.... .....+++++.+.+..+++.- ...+
T Consensus 52 ~~lvllHG~~~~~~--~~~~-l~~~L~-~~~~v~~~D~~G~G~S~~--------~~~~~~~~~~a~~~~~~l~~~-~~~~ 118 (280)
T 3qmv_A 52 LRLVCFPYAGGTVS--AFRG-WQERLG-DEVAVVPVQLPGRGLRLR--------ERPYDTMEPLAEAVADALEEH-RLTH 118 (280)
T ss_dssp EEEEEECCTTCCGG--GGTT-HHHHHC-TTEEEEECCCTTSGGGTT--------SCCCCSHHHHHHHHHHHHHHT-TCSS
T ss_pred ceEEEECCCCCChH--HHHH-HHHhcC-CCceEEEEeCCCCCCCCC--------CCCCCCHHHHHHHHHHHHHHh-CCCC
Confidence 88999999876643 3443 456677 599999999999774311 122334566655555444431 1346
Q ss_pred cEEEEecChhHHHHHHHHhhCCCeee----EEEEcCCcc-cccccccC-CCC-Cc---cccccC-CCC----C-------
Q 004766 562 KLCIEGGSNGGLLVGACINQRPDLFG----CALAHVGVM-DMLRYHKF-TIG-HA---WVSDFG-CSE----E------- 619 (732)
Q Consensus 562 ~i~i~G~S~GG~l~~~~~~~~p~~f~----a~v~~~p~~-d~~~~~~~-~~~-~~---~~~~~g-~p~----~------- 619 (732)
++.++|+|+||.++..++.++|++.. .+++..+.. ........ ... .. +...++ .+. +
T Consensus 119 ~~~lvG~S~Gg~va~~~a~~~p~~~~~~~~~l~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (280)
T 3qmv_A 119 DYALFGHSMGALLAYEVACVLRRRGAPRPRHLFVSGSRAPHLYGDRADHTLSDTALREVIRDLGGLDDADTLGAAYFDRR 198 (280)
T ss_dssp SEEEEEETHHHHHHHHHHHHHHHTTCCCCSCEEEESCCCGGGCSCCCGGGSCHHHHHHHHHHHTCCC---------CCTT
T ss_pred CEEEEEeCHhHHHHHHHHHHHHHcCCCCceEEEEECCCCCCCcCcccccccCHHHHHHHHHHhCCCChhhhcCHHHHHHH
Confidence 89999999999999999998887665 444432211 11100000 000 00 000111 110 0
Q ss_pred ----HHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhcCCCCCCCCCCCEEEE
Q 004766 620 ----EEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGR 695 (732)
Q Consensus 620 ----~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 695 (732)
...+..+..+.+. ... .+..|+|+++|.+|..+++....++.+.+ ...+.++
T Consensus 199 ~~~~~~~~~~~~~~~~~-~~~----------~i~~P~l~i~G~~D~~~~~~~~~~~~~~~-------------~~~~~~~ 254 (280)
T 3qmv_A 199 LPVLRADLRACERYDWH-PRP----------PLDCPTTAFSAAADPIATPEMVEAWRPYT-------------TGSFLRR 254 (280)
T ss_dssp HHHHHHHHHHHHTCCCC-CCC----------CBCSCEEEEEEEECSSSCHHHHHTTGGGB-------------SSCEEEE
T ss_pred HHHHHHHHHHHHhcccc-CCC----------ceecCeEEEEecCCCCcChHHHHHHHHhc-------------CCceEEE
Confidence 0111222223221 112 37889999999999999987766554432 3346777
Q ss_pred EeCCCCCCCCC
Q 004766 696 IERKAGHGVGL 706 (732)
Q Consensus 696 ~~~~~gH~~~~ 706 (732)
++++ ||....
T Consensus 255 ~~~g-gH~~~~ 264 (280)
T 3qmv_A 255 HLPG-NHFFLN 264 (280)
T ss_dssp EEEE-ETTGGG
T ss_pred EecC-CCeEEc
Confidence 7765 998754
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.31 E-value=9.9e-10 Score=112.07 Aligned_cols=225 Identities=11% Similarity=0.079 Sum_probs=148.3
Q ss_pred EEeCCEEEEEEEcCCC---------CeeEEEEEeCCCCCceEEeCCCCcCCCCCEEEEeEEECCCCcEEEEEE-eccCCc
Q 004766 87 FKRGNKYFYFHNTGLQ---------PQSVLYVQDSLDAKAKVLLDPNTLSDDGTAALIKVSVSEDAKYLAYAL-SYSGSD 156 (732)
Q Consensus 87 ~~~g~~~~~~~~~~~~---------~~~~l~~r~~~~~~~~~l~D~~~l~~~~~~~~~~~~~SPDG~~la~~~-~~~G~e 156 (732)
...|+++||.....+. .+..||+.+..+++.++|.+.. ...|||+|++|+|+. +..+.
T Consensus 61 ~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~~~~-----------~~~~s~~g~~Iy~~~~~~~~~- 128 (302)
T 3s25_A 61 NADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDPDP-----------CIYASLIGNYIYYLHYDTQTA- 128 (302)
T ss_dssp EECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEECSC-----------EEEEEEETTEEEEEEESSSSC-
T ss_pred EEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEeecCC-----------ccEEEEeCCEEEEEeecCCCC-
Confidence 4578999999765421 2456898887655555655422 236899999999986 23333
Q ss_pred eEEEEEEECCCCceecccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCCcccEEEEEECCCCCCCCeEEE
Q 004766 157 WATIKLMRIEDQIVEADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCW 236 (732)
Q Consensus 157 ~~~i~v~dl~~g~~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~ 236 (732)
..|+.+++++......+.... .+|+|+|+.|+|+.. ...+|++.++.++.. ..|+
T Consensus 129 -~~Iy~~~~dGs~~~~lt~~~~----~~~~~~g~~iy~t~~------------------g~~~Iy~~~l~g~~~--~~l~ 183 (302)
T 3s25_A 129 -TSLYRIRIDGEEKKKIKNHYL----FTCNTSDRYFYYNNP------------------KNGQLYRYDTASQSE--ALFY 183 (302)
T ss_dssp -EEEEEEETTSCCCEEEESSCC----CCSEEETTEEEEECT------------------TTCCEEEEETTTTEE--EEEE
T ss_pred -ceEEEEECCCCCeEEEeCCCc----eEeeEECCEEEEEeC------------------CCceEEEEECCCCCE--EEEe
Confidence 689999998765333222221 456889999999842 223699999876543 3455
Q ss_pred ecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCCCCcEEeeecccceEEEEEecCCeE
Q 004766 237 KDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVF 316 (732)
Q Consensus 237 ~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dg~~l 316 (732)
+. ... .+ ++|+|++|+++..... ..|+.+++++.. .+.|+... ...++|+|++|
T Consensus 184 ~~---~~~--~~-~~P~g~~iy~t~~~~~---~~I~~~~ldG~~--------------~~~Lt~~~---~~~~~~~g~~I 237 (302)
T 3s25_A 184 DC---NCY--KP-VVLDDTNVYYMDVNRD---NAIVHVNINNPN--------------PVVLTEAN---IEHYNVYGSLI 237 (302)
T ss_dssp CS---CEE--EE-EEEETTEEEEEEGGGT---TEEEEECSSSCC--------------CEECSCSC---EEEEEEETTEE
T ss_pred CC---Ccc--ce-eeecCCEEEEEEcCCC---cEEEEEECCCCC--------------eEEEeCCC---cceEEECCCEE
Confidence 32 222 23 5699999998765432 579999998743 34454322 24588999999
Q ss_pred EEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecCCEEEEEEecCCeeEEEEEeCCCCce
Q 004766 317 TFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSL 385 (732)
Q Consensus 317 ~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~~l~~~~~~~g~~~l~~~d~~~g~~ 385 (732)
|+.+... ...|+++++++.. .+.|... .+..+.++. ++|+++....+ .|+++.++ |..
T Consensus 238 y~~~~~~--~~~i~~~~~DG~~-r~~l~~~----~~~~i~i~~-d~Iy~td~~~~--~i~~~~~d-Gs~ 295 (302)
T 3s25_A 238 FYQRGGD--NPALCVVKNDGTG-FKELAKG----EFCNINVTS-QYVYFTDFVSN--KEYCTSTQ-NPD 295 (302)
T ss_dssp EEEECSS--SCEEEEEETTSCC-CEEEEES----CEEEEEECS-SEEEEEETTTC--CEEEEESS-SCC
T ss_pred EEEECCC--CcEEEEEECCCCc-cEEeeCC----ccceEEEeC-CEEEEEECCCC--eEEEEECC-CCC
Confidence 9876643 3689999998876 3455432 244566666 89998876554 48888876 543
|
| >1r3d_A Conserved hypothetical protein VC1974; structural genomics, hydrolase, NYSGXRC, NEW YORK SGX research center for structural genomics, PSI; 1.90A {Vibrio cholerae} SCOP: c.69.1.35 | Back alignment and structure |
|---|
Probab=99.31 E-value=2.1e-11 Score=122.83 Aligned_cols=103 Identities=16% Similarity=0.099 Sum_probs=72.0
Q ss_pred ccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCccHHHHHHHHHHHHHHcCCCCC
Q 004766 481 HPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQS 560 (732)
Q Consensus 481 ~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~ 560 (732)
.|.||++||..+... .|.. ....|.++||.|+++|+||.|..... ...+++++.+.+..+++.-..+.
T Consensus 16 ~~~vvllHG~~~~~~--~w~~-~~~~L~~~~~~vi~~Dl~GhG~S~~~---------~~~~~~~~a~~l~~~l~~l~~~~ 83 (264)
T 1r3d_A 16 TPLVVLVHGLLGSGA--DWQP-VLSHLARTQCAALTLDLPGHGTNPER---------HCDNFAEAVEMIEQTVQAHVTSE 83 (264)
T ss_dssp BCEEEEECCTTCCGG--GGHH-HHHHHTTSSCEEEEECCTTCSSCC----------------CHHHHHHHHHHHTTCCTT
T ss_pred CCcEEEEcCCCCCHH--HHHH-HHHHhcccCceEEEecCCCCCCCCCC---------CccCHHHHHHHHHHHHHHhCcCC
Confidence 489999999877643 4443 34556557999999999998865421 11345666666666665422222
Q ss_pred CcEEEEecChhHHHHHH---HHhhCCCeeeEEEEcCCc
Q 004766 561 RKLCIEGGSNGGLLVGA---CINQRPDLFGCALAHVGV 595 (732)
Q Consensus 561 ~~i~i~G~S~GG~l~~~---~~~~~p~~f~a~v~~~p~ 595 (732)
.++.++||||||.+++. ++.++|++++++|+..|.
T Consensus 84 ~p~~lvGhSmGG~va~~~~~~a~~~p~~v~~lvl~~~~ 121 (264)
T 1r3d_A 84 VPVILVGYSLGGRLIMHGLAQGAFSRLNLRGAIIEGGH 121 (264)
T ss_dssp SEEEEEEETHHHHHHHHHHHHTTTTTSEEEEEEEESCC
T ss_pred CceEEEEECHhHHHHHHHHHHHhhCccccceEEEecCC
Confidence 23999999999999999 778899999999887653
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.30 E-value=2e-09 Score=114.78 Aligned_cols=223 Identities=9% Similarity=0.029 Sum_probs=146.3
Q ss_pred EEEEEEECCCCceecccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCCcccEEEEEECCCCCCCCeEEEe
Q 004766 158 ATIKLMRIEDQIVEADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWK 237 (732)
Q Consensus 158 ~~i~v~dl~~g~~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~ 237 (732)
..|++||+++++.+...........++|+|||+.|+++.. ....|++|++.+++.. ..+.
T Consensus 12 ~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~------------------~d~~i~v~d~~~~~~~--~~~~ 71 (391)
T 1l0q_A 12 DNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANA------------------HSNDVSIIDTATNNVI--ATVP 71 (391)
T ss_dssp TEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEEG------------------GGTEEEEEETTTTEEE--EEEE
T ss_pred CEEEEEECCCCeEEEEeecCCCcceEEECCCCCEEEEECC------------------CCCeEEEEECCCCeEE--EEEE
Confidence 4799999999986543222223478999999999887742 3347999998765321 2222
Q ss_pred cCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCCCCcEEeeecccceEEEEEecCCeEE
Q 004766 238 DPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFT 317 (732)
Q Consensus 238 ~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dg~~l~ 317 (732)
... ....++|||||++|++.... ...|+++|+.++. ....+..+.......|+|+|+.++
T Consensus 72 ~~~---~v~~~~~spdg~~l~~~~~~----~~~v~v~d~~~~~-------------~~~~~~~~~~~~~~~~s~dg~~l~ 131 (391)
T 1l0q_A 72 AGS---SPQGVAVSPDGKQVYVTNMA----SSTLSVIDTTSNT-------------VAGTVKTGKSPLGLALSPDGKKLY 131 (391)
T ss_dssp CSS---SEEEEEECTTSSEEEEEETT----TTEEEEEETTTTE-------------EEEEEECSSSEEEEEECTTSSEEE
T ss_pred CCC---CccceEECCCCCEEEEEECC----CCEEEEEECCCCe-------------EEEEEeCCCCcceEEECCCCCEEE
Confidence 222 45689999999999877533 2458999988742 122222222222235899999887
Q ss_pred EEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecCC-EEEEEEecCCeeEEEEEeCCCCceeeeccccccee
Q 004766 318 FLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLN-QMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSV 396 (732)
Q Consensus 318 ~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~-~l~~~~~~~g~~~l~~~d~~~g~~~~~l~~~~g~v 396 (732)
+.... ...|+.+|+.+++ ....+... .....+.+++++ .+++....+ ..|++||+.+++....+.. ...+
T Consensus 132 ~~~~~---~~~v~~~d~~~~~-~~~~~~~~--~~~~~~~~~~dg~~l~~~~~~~--~~v~~~d~~~~~~~~~~~~-~~~~ 202 (391)
T 1l0q_A 132 VTNNG---DKTVSVINTVTKA-VINTVSVG--RSPKGIAVTPDGTKVYVANFDS--MSISVIDTVTNSVIDTVKV-EAAP 202 (391)
T ss_dssp EEETT---TTEEEEEETTTTE-EEEEEECC--SSEEEEEECTTSSEEEEEETTT--TEEEEEETTTTEEEEEEEC-SSEE
T ss_pred EEeCC---CCEEEEEECCCCc-EEEEEecC--CCcceEEECCCCCEEEEEeCCC--CEEEEEECCCCeEEEEEec-CCCc
Confidence 76543 3479999998876 23333332 345778888754 565665555 4799999987776555543 3456
Q ss_pred eEeecccCCcEEEEEEecCCCCceEEEEECCCCC
Q 004766 397 NAISARREDSVVFISFTSFLIPGIVYQCNLKTET 430 (732)
Q Consensus 397 ~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~~ 430 (732)
..+.++++++.+++.... .....++.+|+.+++
T Consensus 203 ~~~~~~~~g~~l~~~~~~-~~~~~v~~~d~~~~~ 235 (391)
T 1l0q_A 203 SGIAVNPEGTKAYVTNVD-KYFNTVSMIDTGTNK 235 (391)
T ss_dssp EEEEECTTSSEEEEEEEC-SSCCEEEEEETTTTE
T ss_pred cceEECCCCCEEEEEecC-cCCCcEEEEECCCCe
Confidence 677889999887766531 234689999998774
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=99.29 E-value=1.5e-09 Score=123.47 Aligned_cols=246 Identities=11% Similarity=0.064 Sum_probs=150.5
Q ss_pred EEEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCcee-c--ccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCC
Q 004766 132 AALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVE-A--DALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDA 208 (732)
Q Consensus 132 ~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~-~--~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~ 208 (732)
..+..++|||||++||-.. ...+|+|||+.+++.. . ..........++|+|||+.|+.+..+.
T Consensus 60 ~~v~~~~~spdg~~lasg~-----~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~--------- 125 (611)
T 1nr0_A 60 HQTTVAKTSPSGYYCASGD-----VHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGR--------- 125 (611)
T ss_dssp SCEEEEEECTTSSEEEEEE-----TTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCS---------
T ss_pred CceEEEEECCCCcEEEEEe-----CCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCC---------
Confidence 3477899999999998553 2248999999766521 1 111112357899999999998775332
Q ss_pred CCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccc
Q 004766 209 GTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKK 288 (732)
Q Consensus 209 ~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~ 288 (732)
.....|+.|+.++.... + ..+...+..++|+||+++++++.+... .+.++|..++.
T Consensus 126 ------~~~~~v~~wd~~~~~~~----l--~gh~~~v~~v~f~p~~~~~l~s~s~D~----~v~lwd~~~~~-------- 181 (611)
T 1nr0_A 126 ------ERFGHVFLFDTGTSNGN----L--TGQARAMNSVDFKPSRPFRIISGSDDN----TVAIFEGPPFK-------- 181 (611)
T ss_dssp ------SCSEEEEETTTCCBCBC----C--CCCSSCEEEEEECSSSSCEEEEEETTS----CEEEEETTTBE--------
T ss_pred ------CceeEEEEeeCCCCcce----e--cCCCCCceEEEECCCCCeEEEEEeCCC----eEEEEECCCCe--------
Confidence 12236788876543211 1 123345678999999986444443322 36677765421
Q ss_pred cCCCCCcEEeeecccceE-EEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccC-----CCCCceeEEEEecCCE
Q 004766 289 RDGLLPFVKLIDGFDAQY-EVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPE-----AERDVLESATAVNLNQ 362 (732)
Q Consensus 289 ~~~~~~~~~l~~~~~~~~-~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~-----~~~~~l~~~~~~~~~~ 362 (732)
....+........ ..|+|||+.|+..+. +..|..+|+.++.....+... .....+..+.|++++.
T Consensus 182 -----~~~~l~~H~~~V~~v~fspdg~~las~s~----D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~ 252 (611)
T 1nr0_A 182 -----FKSTFGEHTKFVHSVRYNPDGSLFASTGG----DGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGT 252 (611)
T ss_dssp -----EEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSS
T ss_pred -----EeeeeccccCceEEEEECCCCCEEEEEEC----CCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCC
Confidence 1122222222222 248999987765443 235888888777633333210 1235688899998777
Q ss_pred EEEEEecCCeeEEEEEeCCCCceeeeccc-------------------------------------------ccceeeEe
Q 004766 363 MIVSYLSDVKYVLQIRDLKNGSLLHQLPI-------------------------------------------EIGSVNAI 399 (732)
Q Consensus 363 l~~~~~~~g~~~l~~~d~~~g~~~~~l~~-------------------------------------------~~g~v~~~ 399 (732)
.+++...|+ .|.+||+.+++.+..+.. +...+..+
T Consensus 253 ~l~s~s~D~--~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l 330 (611)
T 1nr0_A 253 KIASASADK--TIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITAL 330 (611)
T ss_dssp EEEEEETTS--EEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEE
T ss_pred EEEEEeCCC--eEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEE
Confidence 788888774 788899887765433321 12346667
Q ss_pred ecccCCcEEEEEEecCCCCceEEEEECCCCC
Q 004766 400 SARREDSVVFISFTSFLIPGIVYQCNLKTET 430 (732)
Q Consensus 400 ~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~~ 430 (732)
.++||++.++ +.+. -..+..+|+.+++
T Consensus 331 ~~spdg~~l~-s~s~---D~~v~~Wd~~~~~ 357 (611)
T 1nr0_A 331 SSSADGKTLF-SADA---EGHINSWDISTGI 357 (611)
T ss_dssp EECTTSSEEE-EEET---TSCEEEEETTTCC
T ss_pred EEeCCCCEEE-EEeC---CCcEEEEECCCCc
Confidence 7888888654 3332 2478889988774
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.28 E-value=9.7e-10 Score=118.99 Aligned_cols=244 Identities=12% Similarity=0.033 Sum_probs=153.8
Q ss_pred eEEECCCCcEEEEEEeccCCceEEEEEEECCCCceeccc------ccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCC
Q 004766 136 KVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADA------LSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAG 209 (732)
Q Consensus 136 ~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~------~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~ 209 (732)
.++||| ++.++++...+ ..|++||+++|+.+... ........++|+|||+.++...
T Consensus 127 ~~~~s~-~~~~~~~~~~~----~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~------------- 188 (433)
T 3bws_A 127 SVRFID-NTRLAIPLLED----EGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQM------------- 188 (433)
T ss_dssp CCEESS-SSEEEEEBTTS----SSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEG-------------
T ss_pred EEEEeC-CCeEEEEeCCC----CeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEEC-------------
Confidence 678999 55565554332 36999999999865311 1111246789999887554332
Q ss_pred CcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCccccccc
Q 004766 210 TETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKR 289 (732)
Q Consensus 210 ~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~ 289 (732)
....|++|++.++... ..+. ........++|+|||+++++.... ...|+++|+.++.
T Consensus 189 ------~d~~v~~~d~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~l~~~~~~----~~~i~~~d~~~~~--------- 245 (433)
T 3bws_A 189 ------QANAVHVFDLKTLAYK--ATVD--LTGKWSKILLYDPIRDLVYCSNWI----SEDISVIDRKTKL--------- 245 (433)
T ss_dssp ------GGTEEEEEETTTCCEE--EEEE--CSSSSEEEEEEETTTTEEEEEETT----TTEEEEEETTTTE---------
T ss_pred ------CCCEEEEEECCCceEE--EEEc--CCCCCeeEEEEcCCCCEEEEEecC----CCcEEEEECCCCc---------
Confidence 2347899998765322 2222 222345688999999998766532 2358999987642
Q ss_pred CCCCCcEEeeecccceEEEEEecCCeEEEEeCCCC----CCceEEEEeCCCCCCceEeccCCCCCceeEEEEecCC-EEE
Q 004766 290 DGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDA----PKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLN-QMI 364 (732)
Q Consensus 290 ~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~----~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~-~l~ 364 (732)
....+..........|+|+|+.+++...... .+..|+.+|+.+++ ....+.+. ..+..+.+++++ .++
T Consensus 246 ----~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~-~~~~~~~~--~~~~~~~~~~~g~~l~ 318 (433)
T 3bws_A 246 ----EIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEK-LIDTIGPP--GNKRHIVSGNTENKIY 318 (433)
T ss_dssp ----EEEECCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTE-EEEEEEEE--ECEEEEEECSSTTEEE
T ss_pred ----EEEEecCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCc-EEeeccCC--CCcceEEECCCCCEEE
Confidence 1111111111222358899998887664321 25689999998775 23333332 245678888754 677
Q ss_pred EEEecCCeeEEEEEeCCCCceeeecccccceeeEeecccCCcEEEEEEecCCCC-----------ceEEEEECCCCC
Q 004766 365 VSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIP-----------GIVYQCNLKTET 430 (732)
Q Consensus 365 ~~~~~~g~~~l~~~d~~~g~~~~~l~~~~g~v~~~~~s~d~~~l~~~~ss~~~p-----------~~~y~~d~~~~~ 430 (732)
+....+ ..|++||+.+++....+.. ...+..+.++++++.+++.......+ ..++.+|+.+++
T Consensus 319 ~~~~~~--~~v~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~ 392 (433)
T 3bws_A 319 VSDMCC--SKIEVYDLKEKKVQKSIPV-FDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDT 392 (433)
T ss_dssp EEETTT--TEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTE
T ss_pred EEecCC--CEEEEEECCCCcEEEEecC-CCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCc
Confidence 776666 4799999987876555543 34466788899998877665543322 489999998874
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=99.28 E-value=1e-09 Score=127.51 Aligned_cols=250 Identities=12% Similarity=0.019 Sum_probs=156.6
Q ss_pred CCCCcEEEEEEeccCCceEEEEEEEC---CCC--c--eecccc------cceeeeeEEEE-eCCcEEEEEEecCCCCCCC
Q 004766 140 SEDAKYLAYALSYSGSDWATIKLMRI---EDQ--I--VEADAL------SWFKFSSIAWT-HDSKGFFYSRYPAPKEGKD 205 (732)
Q Consensus 140 SPDG~~la~~~~~~G~e~~~i~v~dl---~~g--~--~~~~~~------~~~~~~~~~Ws-pDg~~l~y~~~~~~~~~~~ 205 (732)
.++|.++.|+...+|.+...++..+. .++ . .+.+.. +....+.++|| |||+.|+|+....
T Consensus 123 ~~~g~~~yy~~~~~g~~~~vl~r~~~~~~~~~~~~~~vlld~n~~a~~~~~~~~~~~~~S~PDG~~lAy~~~~~------ 196 (751)
T 2xe4_A 123 YVYGKYRYYTREVKGKPYKIYCRVFTDKEPGDVAAEEVIIDVNQVAEGKAFCDVMEVKPAPPEHDLVAFSVDMS------ 196 (751)
T ss_dssp EEETTEEEEEEECTTCCSCEEEEEETTSCTTCTTTCEEEEEHHHHTTTCSCCEEEEEEECTTTTCEEEEEEESS------
T ss_pred eEECCEEEEEEECCCCceeEEEEEcCCCCCCCCcCCEEEechhHhccCCCeEEEeeeEecCCCCCEEEEEEeCC------
Confidence 37899999998888776667888886 443 2 222211 11134789999 9999999997643
Q ss_pred CCCCCcccCCcccEEEEEECCCC-CCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcc
Q 004766 206 MDAGTETDSNLYHEFYYHFLGTK-QSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLE 284 (732)
Q Consensus 206 ~~~~~~~~~~~~~~v~~~~lgt~-~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~ 284 (732)
.....+||++++.++ ......+ . ....++.|||||+.|++...+......+||++++.++...
T Consensus 197 --------G~~~~~l~v~dl~~g~~~l~~~~-~-----~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~-- 260 (751)
T 2xe4_A 197 --------GNEVYTIEFKRISDPSQTIADKV-S-----GTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSE-- 260 (751)
T ss_dssp --------SSSCEEEEEEETTCTTCCCCCCE-E-----EECSCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGG--
T ss_pred --------CCceEEEEEEECCCCCEeCCccc-c-----CceeeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchh--
Confidence 123357999999887 4211001 1 1123689999999999987654333468999999774211
Q ss_pred cccccCCCCCcEEeeecccc---eEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCC-Cc--eEeccCCCCCceeEEEEe
Q 004766 285 GFKKRDGLLPFVKLIDGFDA---QYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPN-DW--FEVIPEAERDVLESATAV 358 (732)
Q Consensus 285 ~~~~~~~~~~~~~l~~~~~~---~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~-~~--~~l~~~~~~~~l~~~~~~ 358 (732)
-..+....+. ....|||||+.|++.+... ....|+.+|++++. .+ +.+++.. ......+.+.
T Consensus 261 ----------~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~~~-~~~~~s~~~~ 328 (751)
T 2xe4_A 261 ----------DVCLYEEHNPLFSAFMYKAADTNTLCIGSQSP-ETAEVHLLDLRKGNAHNTLEIVRPRE-KGVRYDVQMH 328 (751)
T ss_dssp ----------CEEEEECCCTTCEEEEEECTTSSEEEEEEECS-SCEEEEEEESSSCTTCCCEEESSCCC-TTCCEEEEEE
T ss_pred ----------cEEEEecCCCceEEEEEECCCCCEEEEEecCC-CCceEEEEECCCCCCCceeEEeecCC-CCceEEEeee
Confidence 1122221111 1235999999999988654 36789999998763 35 6666544 2333334444
Q ss_pred cCCEEEEEEecC--CeeEEEEEeCCCCceeee-cccc--cceeeEeecccCCcEEEEEEecCCCCceEEEEEC
Q 004766 359 NLNQMIVSYLSD--VKYVLQIRDLKNGSLLHQ-LPIE--IGSVNAISARREDSVVFISFTSFLIPGIVYQCNL 426 (732)
Q Consensus 359 ~~~~l~~~~~~~--g~~~l~~~d~~~g~~~~~-l~~~--~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~ 426 (732)
.++.+++....+ +..+|++++++++...+. +..+ ...+..++ ..++.+++++.. .....++.+++
T Consensus 329 ~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~--~~~~~lv~~~~~-~g~~~l~~~dl 398 (751)
T 2xe4_A 329 GTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIA--VRSNYLVVAGRR-AGLTRIWTMMA 398 (751)
T ss_dssp TTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEE--ECSSEEEEEEEE-TTEEEEEEEEC
T ss_pred eCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEE--EECCEEEEEEEe-CCEEEEEEEec
Confidence 457888888775 567999999875322234 3222 22334444 346677777654 33567889986
|
| >4i19_A Epoxide hydrolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.15A {Streptomyces carzinostaticus subsp} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.7e-10 Score=122.90 Aligned_cols=122 Identities=15% Similarity=0.081 Sum_probs=90.2
Q ss_pred ccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhc---------CcEEEEEcccCCCCCchh
Q 004766 458 SKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHL---------GAVFCIANIRGGGEYGEE 528 (732)
Q Consensus 458 s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~---------G~~v~~~~~rG~g~~g~~ 528 (732)
..|| .+|++..+.+++ +..|.||++||.+++.. .|.. +...|.+. ||.|+++|.||.|....
T Consensus 74 ~i~g-~~i~~~~~~~~~----~~~~plll~HG~~~s~~--~~~~-~~~~L~~~~~~~~~~~~~~~vi~~dl~G~G~S~~- 144 (388)
T 4i19_A 74 EIDG-ATIHFLHVRSPE----PDATPMVITHGWPGTPV--EFLD-IIGPLTDPRAHGGDPADAFHLVIPSLPGFGLSGP- 144 (388)
T ss_dssp EETT-EEEEEEEECCSS----TTCEEEEEECCTTCCGG--GGHH-HHHHHHCGGGGTSCGGGCEEEEEECCTTSGGGCC-
T ss_pred EECC-eEEEEEEccCCC----CCCCeEEEECCCCCCHH--HHHH-HHHHHhCcccccCCCCCCeEEEEEcCCCCCCCCC-
Confidence 4489 999987776543 45688999999988643 3443 34566634 99999999999774321
Q ss_pred HHhcccccCCccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCcc
Q 004766 529 WHKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVM 596 (732)
Q Consensus 529 ~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~ 596 (732)
......+++++...+..|++. ...+++.++|+|+||+++..++.++|++++++|+..|+.
T Consensus 145 ------~~~~~~~~~~~a~~~~~l~~~--lg~~~~~l~G~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 204 (388)
T 4i19_A 145 ------LKSAGWELGRIAMAWSKLMAS--LGYERYIAQGGDIGAFTSLLLGAIDPSHLAGIHVNLLQT 204 (388)
T ss_dssp ------CSSCCCCHHHHHHHHHHHHHH--TTCSSEEEEESTHHHHHHHHHHHHCGGGEEEEEESSCCC
T ss_pred ------CCCCCCCHHHHHHHHHHHHHH--cCCCcEEEEeccHHHHHHHHHHHhChhhceEEEEecCCC
Confidence 111134677777777777655 233589999999999999999999999999999987643
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.28 E-value=8.7e-10 Score=118.73 Aligned_cols=225 Identities=14% Similarity=0.103 Sum_probs=148.2
Q ss_pred CEEEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceeccc-ccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCC
Q 004766 131 TAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADA-LSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAG 209 (732)
Q Consensus 131 ~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~-~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~ 209 (732)
...+..+.|||||++|+-.. ...+|++||+.+++.+... ........++|+|||+.|+....+
T Consensus 150 ~~~V~~v~~~~~~~~l~sgs-----~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D----------- 213 (410)
T 1vyh_C 150 TDSVQDISFDHSGKLLASCS-----ADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRD----------- 213 (410)
T ss_dssp SSCEEEEEECTTSSEEEEEE-----TTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETT-----------
T ss_pred CCcEEEEEEcCCCCEEEEEe-----CCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCC-----------
Confidence 34578899999999887553 2247999999988755322 112235789999999988876533
Q ss_pred CcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCccccccc
Q 004766 210 TETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKR 289 (732)
Q Consensus 210 ~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~ 289 (732)
..|.+|++.++.. +..+.. +...+..+.++|||++|+..+.++. +.++|+.++..
T Consensus 214 --------~~i~~wd~~~~~~--~~~~~~--h~~~v~~~~~~~~g~~l~s~s~D~~-----v~vwd~~~~~~-------- 268 (410)
T 1vyh_C 214 --------KTIKMWEVQTGYC--VKTFTG--HREWVRMVRPNQDGTLIASCSNDQT-----VRVWVVATKEC-------- 268 (410)
T ss_dssp --------SEEEEEETTTCCE--EEEEEC--CSSCEEEEEECTTSSEEEEEETTSC-----EEEEETTTCCE--------
T ss_pred --------CeEEEEECCCCcE--EEEEeC--CCccEEEEEECCCCCEEEEEcCCCe-----EEEEECCCCce--------
Confidence 3689999987642 222332 3345678899999999877664433 77788876421
Q ss_pred CCCCCcEEeeecccce-EEEEEec--------------------CCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCC
Q 004766 290 DGLLPFVKLIDGFDAQ-YEVIAND--------------------DTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAE 348 (732)
Q Consensus 290 ~~~~~~~~l~~~~~~~-~~~~s~d--------------------g~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~ 348 (732)
...+....... ...|+|+ |..|+. ... ...|..+|+.++.....+..+.
T Consensus 269 -----~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~s-gs~---D~~i~iwd~~~~~~~~~~~~h~- 338 (410)
T 1vyh_C 269 -----KAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLS-GSR---DKTIKMWDVSTGMCLMTLVGHD- 338 (410)
T ss_dssp -----EEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEE-EET---TSEEEEEETTTTEEEEEEECCS-
T ss_pred -----eeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEE-EeC---CCeEEEEECCCCceEEEEECCC-
Confidence 11221111111 1135664 333433 322 3468889998876455555554
Q ss_pred CCceeEEEEecCCEEEEEEecCCeeEEEEEeCCCCceeeecccccceeeEeecccCCcEEE
Q 004766 349 RDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVF 409 (732)
Q Consensus 349 ~~~l~~~~~~~~~~l~~~~~~~g~~~l~~~d~~~g~~~~~l~~~~g~v~~~~~s~d~~~l~ 409 (732)
..+..+.+++++.++++...++ .|++||+.+++.+..+..+...|..+.++++++.++
T Consensus 339 -~~v~~v~~~~~g~~l~s~s~D~--~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~ 396 (410)
T 1vyh_C 339 -NWVRGVLFHSGGKFILSCADDK--TLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVV 396 (410)
T ss_dssp -SCEEEEEECSSSSCEEEEETTT--EEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEE
T ss_pred -CcEEEEEEcCCCCEEEEEeCCC--eEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEE
Confidence 5678889988777777777774 789999987877667766667788889999988554
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.27 E-value=2.5e-09 Score=116.62 Aligned_cols=201 Identities=12% Similarity=0.068 Sum_probs=123.2
Q ss_pred eeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCCcccEEEEEECC--CCCCCCeEEEecCCCCeeEEEeEEecCCcEE
Q 004766 180 FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLG--TKQSEDILCWKDPEHPKYIFSGHVTEDGQYL 257 (732)
Q Consensus 180 ~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~lg--t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l 257 (732)
...++|+|||+.|+++.. ....|.+|++. ++. .+..+.....+.....++|+|||++|
T Consensus 105 v~~~~~s~d~~~l~~~~~------------------~dg~v~iwd~~~~~~~--~~~~~~~~~~~~~v~~~~~sp~~~~l 164 (450)
T 2vdu_B 105 IRNLRLTSDESRLIACAD------------------SDKSLLVFDVDKTSKN--VLKLRKRFCFSKRPNAISIAEDDTTV 164 (450)
T ss_dssp EEEEEECTTSSEEEEEEG------------------GGTEEEEEEECSSSSS--CEEEEEEEECSSCEEEEEECTTSSEE
T ss_pred eEEEEEcCCCCEEEEEEC------------------CCCeEEEEECcCCCCc--eeeeeecccCCCCceEEEEcCCCCEE
Confidence 467899999999866642 23468888887 443 22333221223346689999999999
Q ss_pred EEEEecCCcceEEEEEEeCCCCCCCcccccccCCCCCcEEeeecccceE-EEEEec---CCeEEEEeCCCCCCceEEEEe
Q 004766 258 VMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQY-EVIAND---DTVFTFLTNKDAPKYKIIRVD 333 (732)
Q Consensus 258 ~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~s~d---g~~l~~~s~~~~~~~~l~~~d 333 (732)
+....+ ..++++++.++... ..+...+........ ..|+|+ ++.|+. +..+ ..|..+|
T Consensus 165 ~~~~~~-----g~v~~~~~~~~~~~---------~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s-~~~d---~~i~vwd 226 (450)
T 2vdu_B 165 IIADKF-----GDVYSIDINSIPEE---------KFTQEPILGHVSMLTDVHLIKDSDGHQFIIT-SDRD---EHIKISH 226 (450)
T ss_dssp EEEETT-----SEEEEEETTSCCCS---------SCCCCCSEECSSCEEEEEEEECTTSCEEEEE-EETT---SCEEEEE
T ss_pred EEEeCC-----CcEEEEecCCcccc---------cccceeeecccCceEEEEEcCCCCCCcEEEE-EcCC---CcEEEEE
Confidence 876532 34889998764311 001112222222122 258998 655554 3332 3578888
Q ss_pred CCCCCCceEec-cCCCCCceeEEEEecCCEEEEEEecCCeeEEEEEeCCCCceeeecccc--------------------
Q 004766 334 LKEPNDWFEVI-PEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIE-------------------- 392 (732)
Q Consensus 334 ~~~~~~~~~l~-~~~~~~~l~~~~~~~~~~l~~~~~~~g~~~l~~~d~~~g~~~~~l~~~-------------------- 392 (732)
+.++.....+. .+. ..+..+.++ ++.++++...++ .|.+||+.+|+.+..+...
T Consensus 227 ~~~~~~~~~~~~~h~--~~v~~~~~s-d~~~l~s~~~d~--~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (450)
T 2vdu_B 227 YPQCFIVDKWLFGHK--HFVSSICCG-KDYLLLSAGGDD--KIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNE 301 (450)
T ss_dssp ESCTTCEEEECCCCS--SCEEEEEEC-STTEEEEEESSS--EEEEEETTTCCEEEEEECHHHHGGGCCTTSBC-------
T ss_pred CCCCceeeeeecCCC--CceEEEEEC-CCCEEEEEeCCC--eEEEEECCCCcEeeeecchhhhhhhhhhccccccccccc
Confidence 87776344433 333 567888888 677777777664 7999999988865555421
Q ss_pred -----cceeeEeecccCCcEEEEEEecCCCCceEEEEEC
Q 004766 393 -----IGSVNAISARREDSVVFISFTSFLIPGIVYQCNL 426 (732)
Q Consensus 393 -----~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~ 426 (732)
...+..+.++++++.+++.... -..++.|++
T Consensus 302 ~~~~~~~~v~~i~~~~~~~~l~~~~~~---d~~i~iw~~ 337 (450)
T 2vdu_B 302 NNDIIEFAVSKIIKSKNLPFVAFFVEA---TKCIIILEM 337 (450)
T ss_dssp ---CBCCCEEEEEECSSSSEEEEEETT---CSEEEEEEE
T ss_pred ccccceEEEEEEEEeCCCCEEEEEECC---CCeEEEEEe
Confidence 1346677788888876655422 356888887
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.27 E-value=1.7e-09 Score=113.87 Aligned_cols=242 Identities=9% Similarity=0.024 Sum_probs=151.6
Q ss_pred EEEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecc-cccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCC
Q 004766 132 AALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEAD-ALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGT 210 (732)
Q Consensus 132 ~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~-~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~ 210 (732)
..+..+.|||||++||-.. ...+|+|||+.+++.... .........++|+|||+.|+....
T Consensus 65 ~~V~~~~~s~d~~~l~s~s-----~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~------------- 126 (354)
T 2pbi_B 65 NKVLCMDWCKDKRRIVSSS-----QDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGL------------- 126 (354)
T ss_dssp SCEEEEEECTTSSEEEEEE-----TTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEEST-------------
T ss_pred CeEEEEEECCCCCEEEEEe-----CCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeC-------------
Confidence 3467899999999887543 235899999988874321 111112468999999998887632
Q ss_pred cccCCcccEEEEEECCCCCC----CCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccc
Q 004766 211 ETDSNLYHEFYYHFLGTKQS----EDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGF 286 (732)
Q Consensus 211 ~~~~~~~~~v~~~~lgt~~~----~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~ 286 (732)
...+.+|++..... .....+.. +...+..+.|+|+++.|+..+.+ ..+.++|+.++.
T Consensus 127 ------d~~i~v~~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~l~t~s~D-----~~v~lwd~~~~~------ 187 (354)
T 2pbi_B 127 ------DNKCSVYPLTFDKNENMAAKKKSVAM--HTNYLSACSFTNSDMQILTASGD-----GTCALWDVESGQ------ 187 (354)
T ss_dssp ------TSEEEEEECCCCTTCCSGGGCEEEEE--CSSCEEEEEECSSSSEEEEEETT-----SEEEEEETTTCC------
T ss_pred ------CCCEEEEEEeccccccccccceeeec--cCCcEEEEEEeCCCCEEEEEeCC-----CcEEEEeCCCCe------
Confidence 33567777654321 11112222 23356688999999998766543 347888988742
Q ss_pred cccCCCCCcEEeeecccceE--EEEEe--cCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecCCE
Q 004766 287 KKRDGLLPFVKLIDGFDAQY--EVIAN--DDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQ 362 (732)
Q Consensus 287 ~~~~~~~~~~~l~~~~~~~~--~~~s~--dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~~ 362 (732)
....+.. ....+ ..++| +|+.|+..+. ...|..+|+.++.....+..+. ..+..+.+++++.
T Consensus 188 -------~~~~~~~-h~~~v~~~~~~~~~~g~~l~sgs~----Dg~v~~wd~~~~~~~~~~~~h~--~~v~~v~~~p~~~ 253 (354)
T 2pbi_B 188 -------LLQSFHG-HGADVLCLDLAPSETGNTFVSGGC----DKKAMVWDMRSGQCVQAFETHE--SDVNSVRYYPSGD 253 (354)
T ss_dssp -------EEEEEEC-CSSCEEEEEECCCSSCCEEEEEET----TSCEEEEETTTCCEEEEECCCS--SCEEEEEECTTSS
T ss_pred -------EEEEEcC-CCCCeEEEEEEeCCCCCEEEEEeC----CCeEEEEECCCCcEEEEecCCC--CCeEEEEEeCCCC
Confidence 1222322 22222 23555 4555554333 3468899998877444443443 5688899998777
Q ss_pred EEEEEecCCeeEEEEEeCCCCceeeecccc--cceeeEeecccCCcEEEEEEecCCCCceEEEEECCCCC
Q 004766 363 MIVSYLSDVKYVLQIRDLKNGSLLHQLPIE--IGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 430 (732)
Q Consensus 363 l~~~~~~~g~~~l~~~d~~~g~~~~~l~~~--~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~~ 430 (732)
++++...++ .|++||+.+++.+..+... ...+..+.+++++..++.... -..+..||+.+++
T Consensus 254 ~l~s~s~D~--~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~----d~~i~vwd~~~~~ 317 (354)
T 2pbi_B 254 AFASGSDDA--TCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYN----DYTINVWDVLKGS 317 (354)
T ss_dssp EEEEEETTS--CEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEET----TSCEEEEETTTCS
T ss_pred EEEEEeCCC--eEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEEC----CCcEEEEECCCCc
Confidence 777887774 6888999866553333322 234567788899986654433 2578899987774
|
| >1thg_A Lipase; hydrolase(carboxylic esterase); HET: NAG NDG; 1.80A {Galactomyces geotrichum} SCOP: c.69.1.17 | Back alignment and structure |
|---|
Probab=99.27 E-value=4.2e-12 Score=140.71 Aligned_cols=227 Identities=18% Similarity=0.204 Sum_probs=135.4
Q ss_pred EEEEEEEcCCCCCCCCccEEEEEcCCCCccCC-CCcChhH--HH-HHHhcCcEEEEEcccCCCCCchhHHhcc---cccC
Q 004766 465 IPMFIVSKKNIKLDGSHPCLLYGYGGFNISVT-PSFSVSR--TI-LMRHLGAVFCIANIRGGGEYGEEWHKGG---ALAK 537 (732)
Q Consensus 465 i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~-~~~~~~~--~~-~l~~~G~~v~~~~~rG~g~~g~~~~~~~---~~~~ 537 (732)
+.+.++.|+....+++.|+||++|||...... ..|.... .. +....|++|+.+|||.+. +| |.... ....
T Consensus 106 l~l~v~~P~~~~~~~~~Pviv~iHGGg~~~g~~~~~~~~~l~~~~l~~~~~~vvv~~nYRl~~-~g--f~~~~~~~~~~~ 182 (544)
T 1thg_A 106 LYLNVFRPAGTKPDAKLPVMVWIYGGAFVYGSSAAYPGNSYVKESINMGQPVVFVSINYRTGP-FG--FLGGDAITAEGN 182 (544)
T ss_dssp CEEEEEEETTCCTTCCEEEEEEECCCTTCCSGGGGCCSHHHHHHHHHTTCCCEEEEECCCCHH-HH--HCCSHHHHHHTC
T ss_pred eEEEEEeCCCCCCCCCCcEEEEECCCccccCCccccCchHHHHHHhhcCCCEEEEeCCCCCCc-cc--CCCcccccccCC
Confidence 55667788765445679999999998543222 2343221 11 122258999999999764 21 11000 0123
Q ss_pred CccHHHHHHHHHHHHHHcC---CCCCCcEEEEecChhHHHHHHHHhhC--------CCeeeEEEEcCCcccccccccCCC
Q 004766 538 KQNCFDDFISASEYLISAG---YTQSRKLCIEGGSNGGLLVGACINQR--------PDLFGCALAHVGVMDMLRYHKFTI 606 (732)
Q Consensus 538 ~~~~~~D~~~~~~~l~~~~---~~d~~~i~i~G~S~GG~l~~~~~~~~--------p~~f~a~v~~~p~~d~~~~~~~~~ 606 (732)
+...+.|+.+|++|+.++- -.||+||.|+|+|+||.+++.++... +.+|+++|+.+|............
T Consensus 183 ~n~gl~D~~~Al~wv~~ni~~fggDp~~Vti~G~SaGg~~~~~~~~~~~~~~~~~~~~lf~~~i~~Sg~~~~~~~~~~~~ 262 (544)
T 1thg_A 183 TNAGLHDQRKGLEWVSDNIANFGGDPDKVMIFGESAGAMSVAHQLIAYGGDNTYNGKKLFHSAILQSGGPLPYHDSSSVG 262 (544)
T ss_dssp TTHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHGGGTCCEETTEESCSEEEEESCCCCCCSSSCCSS
T ss_pred CchhHHHHHHHHHHHHHHHHHhCCChhHeEEEEECHHHHHHHHHHhCCCccccccccccccceEEecccccccCcCChHH
Confidence 3446899999999998762 36999999999999999998877752 468999999998542211111011
Q ss_pred CC-cc---ccccCCCCC---HHHHHHHHhcCcccCCCCCCC-CCCCCCCCCCe-EEEEeeCCCCCCCchHHHHHHHHHHH
Q 004766 607 GH-AW---VSDFGCSEE---EEEFYWLIKYSPLHNVRRPWE-QNPDKPFQYPS-TLLLTADHDDRVVPLHSLKLLATMQY 677 (732)
Q Consensus 607 ~~-~~---~~~~g~p~~---~~~~~~~~~~sp~~~~~~~~~-~~~~~~~~~~p-~Li~~g~~D~~v~~~~~~~~~~~l~~ 677 (732)
.. .+ ....|++.. .+..+.|++.++-..++.... ..... ...++ .+......|..+.+.++.++.++.+.
T Consensus 263 ~~~~~~~~~~~~gc~~~~~~~~~~~cLr~~~~~~l~~~~~~~~~~~~-~~~~~~~~~f~P~~Dg~~l~~~p~~~~~~g~~ 341 (544)
T 1thg_A 263 PDISYNRFAQYAGCDTSASANDTLECLRSKSSSVLHDAQNSYDLKDL-FGLLPQFLGFGPRPDGNIIPDAAYELFRSGRY 341 (544)
T ss_dssp SSCHHHHHHHHHTCCTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHS-TTTSCGGGTSCCCCCSSSSCSCHHHHHHTTCS
T ss_pred HHHHHHHHHHHhCCCCCCCcHHHHHHHhcCCHHHHHHhhhhcccccc-cccccccccceeeeCCcccCcCHHHHHhcCCC
Confidence 11 11 123566532 245666777665432211000 00000 00011 11233445777888888887766544
Q ss_pred hhcCCCCCCCCCCCEEEEEeCCCCCCCC
Q 004766 678 VLCTSLENSPQTNPIIGRIERKAGHGVG 705 (732)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~gH~~~ 705 (732)
. ++|+.+-...++||.+.
T Consensus 342 ~----------~vp~l~G~~~~Eg~~f~ 359 (544)
T 1thg_A 342 A----------KVPYISGNQEDEGTAFA 359 (544)
T ss_dssp C----------CCCEEEEEETBTTTTTG
T ss_pred C----------CccEEEEeecCchhhhc
Confidence 4 78999999999999875
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.26 E-value=2.5e-10 Score=122.80 Aligned_cols=262 Identities=12% Similarity=0.045 Sum_probs=154.1
Q ss_pred EEeEEECCCCcEEEEEEeccC------CceEEEEEEECCCCce---ecccccceeeeeEEEEeCCcEEEEEEecCCCCCC
Q 004766 134 LIKVSVSEDAKYLAYALSYSG------SDWATIKLMRIEDQIV---EADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGK 204 (732)
Q Consensus 134 ~~~~~~SPDG~~la~~~~~~G------~e~~~i~v~dl~~g~~---~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~ 204 (732)
+..++|||||+.++++.+..| +....|++||+.+++. +........+..++|+||++.|+....+
T Consensus 15 v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d------ 88 (416)
T 2pm9_A 15 TATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDN------ 88 (416)
T ss_dssp SCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESS------
T ss_pred cceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccC------
Confidence 346789999985555544444 4456899999998862 2222222235789999999988877543
Q ss_pred CCCCCCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecC-CcEEEEEEecCCcceEEEEEEeCCCCCCCc
Q 004766 205 DMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTED-GQYLVMCIEENCDPVNKVYYCDLSALPEGL 283 (732)
Q Consensus 205 ~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpD-g~~l~~~~~~~~~~~~~l~~~d~~~~~~~~ 283 (732)
..|.+|++.+.......+.....+...+..+.|+|| +++|+....+ ..|+++|+.++....
T Consensus 89 -------------g~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d-----g~v~iwd~~~~~~~~ 150 (416)
T 2pm9_A 89 -------------GSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNN-----GEIFIWDMNKCTESP 150 (416)
T ss_dssp -------------SCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSS-----SCEEBCBTTTTSSCT
T ss_pred -------------CeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCC-----CeEEEEECCCCcccc
Confidence 258888887632222133332333344567899999 6766554332 348888987743100
Q ss_pred ccccccCCCCCcEEeeecc-cceEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCC----CCceeEEEEe
Q 004766 284 EGFKKRDGLLPFVKLIDGF-DAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAE----RDVLESATAV 358 (732)
Q Consensus 284 ~~~~~~~~~~~~~~l~~~~-~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~----~~~l~~~~~~ 358 (732)
..+ .......+.... ......|+|++..+++.... ...|..+|+.++.....+..+.. ...+..+.++
T Consensus 151 ~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 223 (416)
T 2pm9_A 151 SNY----TPLTPGQSMSSVDEVISLAWNQSLAHVFASAGS---SNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWH 223 (416)
T ss_dssp TTC----CCBCCCCSCCSSCCCCEEEECSSCTTEEEEESS---SSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEEC
T ss_pred ccc----cccccccccCCCCCeeEEEeCCCCCcEEEEEcC---CCCEEEEECCCCCcceEEeccccccccCCceEEEEEC
Confidence 000 000000011111 11223588985555555443 34688899987753333322210 3568889999
Q ss_pred cCC-EEEEEEecCC-eeEEEEEeCCCC-ceeeecc-cccceeeEeeccc-CCcEEEEEEecCCCCceEEEEECCCCC
Q 004766 359 NLN-QMIVSYLSDV-KYVLQIRDLKNG-SLLHQLP-IEIGSVNAISARR-EDSVVFISFTSFLIPGIVYQCNLKTET 430 (732)
Q Consensus 359 ~~~-~l~~~~~~~g-~~~l~~~d~~~g-~~~~~l~-~~~g~v~~~~~s~-d~~~l~~~~ss~~~p~~~y~~d~~~~~ 430 (732)
+++ .+++....++ ...|++||+.++ +....+. .+...+..+.+++ ++..++ +.+. -..+..||+.+++
T Consensus 224 ~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~-s~~~---dg~v~~wd~~~~~ 296 (416)
T 2pm9_A 224 PKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLL-SSGR---DNTVLLWNPESAE 296 (416)
T ss_dssp SSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEE-EEES---SSEEEEECSSSCC
T ss_pred CCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEE-EEeC---CCCEEEeeCCCCc
Confidence 853 5666666663 237899999876 3434444 3456777888888 666544 4333 3579999998875
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=99.26 E-value=1.8e-09 Score=116.36 Aligned_cols=240 Identities=10% Similarity=-0.049 Sum_probs=151.9
Q ss_pred eEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCC
Q 004766 136 KVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSN 215 (732)
Q Consensus 136 ~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~ 215 (732)
.++|||||++|+..... ..|++||+.+++...............|+||++.|+....+
T Consensus 61 ~~~~s~~g~~l~~~~~d-----~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d----------------- 118 (420)
T 3vl1_A 61 GNTFEKVGSHLYKARLD-----GHDFLFNTIIRDGSKMLKRADYTAVDTAKLQMRRFILGTTE----------------- 118 (420)
T ss_dssp TCEEEEEETTEEEEEET-----TEEEEEECCSEETTTTSCSCCEEEEEEECSSSCEEEEEETT-----------------
T ss_pred ceeeeecCCeEEEEEcC-----CcEEEEEecccceeeEEecCCceEEEEEecCCCEEEEEECC-----------------
Confidence 57899999999877532 37999999887743322111112455799999998887533
Q ss_pred cccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCCCCc
Q 004766 216 LYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPF 295 (732)
Q Consensus 216 ~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~ 295 (732)
..|.+|++.++. .+.....+...+..++|+|||++|+..+.+ ..|.++|+.++. ..
T Consensus 119 --g~i~iwd~~~~~----~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d-----~~i~iwd~~~~~-------------~~ 174 (420)
T 3vl1_A 119 --GDIKVLDSNFNL----QREIDQAHVSEITKLKFFPSGEALISSSQD-----MQLKIWSVKDGS-------------NP 174 (420)
T ss_dssp --SCEEEECTTSCE----EEEETTSSSSCEEEEEECTTSSEEEEEETT-----SEEEEEETTTCC-------------CC
T ss_pred --CCEEEEeCCCcc----eeeecccccCccEEEEECCCCCEEEEEeCC-----CeEEEEeCCCCc-------------Cc
Confidence 258888876542 222222334566789999999988766533 348888988642 13
Q ss_pred EEeeecccceE-EEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCC-CCCceeEEE-----------------
Q 004766 296 VKLIDGFDAQY-EVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEA-ERDVLESAT----------------- 356 (732)
Q Consensus 296 ~~l~~~~~~~~-~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~-~~~~l~~~~----------------- 356 (732)
..+........ ..|+|+++.|+..+.. ..|..+|+.++.....+..+. ....+..+.
T Consensus 175 ~~~~~h~~~v~~~~~~~~~~~l~s~~~d----~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v 250 (420)
T 3vl1_A 175 RTLIGHRATVTDIAIIDRGRNVLSASLD----GTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKK 250 (420)
T ss_dssp EEEECCSSCEEEEEEETTTTEEEEEETT----SCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCC
T ss_pred eEEcCCCCcEEEEEEcCCCCEEEEEcCC----CcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcc
Confidence 33332222222 2589999887755442 358888988775333332211 112333333
Q ss_pred ----EecCCEEEEEEecCCeeEEEEEeCCCCceeeecccc-cceeeEeecccCCcEEEEEEecCCCCceEEEEECCCCC
Q 004766 357 ----AVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIE-IGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 430 (732)
Q Consensus 357 ----~~~~~~l~~~~~~~g~~~l~~~d~~~g~~~~~l~~~-~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~~ 430 (732)
+++++.+++....++ .|.+||+.+++....+... ...+..+.+++++..++++.+. -..++.||+.+++
T Consensus 251 ~~~~~s~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~---dg~i~vwd~~~~~ 324 (420)
T 3vl1_A 251 NNLEFGTYGKYVIAGHVSG--VITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYE---NGMLAQWDLRSPE 324 (420)
T ss_dssp CTTCSSCTTEEEEEEETTS--CEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEET---TSEEEEEETTCTT
T ss_pred cceEEcCCCCEEEEEcCCC--eEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeC---CCeEEEEEcCCCc
Confidence 345566777777774 6889999877765555432 5667888999998834444333 2689999998764
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=99.25 E-value=3.2e-10 Score=119.64 Aligned_cols=241 Identities=10% Similarity=0.031 Sum_probs=143.4
Q ss_pred EEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceeccc-----ccceeeeeEEEEeCCcEEEEEEecCCCCCCCCC
Q 004766 133 ALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADA-----LSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMD 207 (732)
Q Consensus 133 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~-----~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~ 207 (732)
.+..++||||+++|+-+ .. .+|+|||+.+++.+... .....+..++|+|||+.|+....+
T Consensus 96 ~V~~~~~s~d~~~l~~s--~d----g~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~d--------- 160 (357)
T 4g56_B 96 GVTDVAWVSEKGILVAS--DS----GAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKD--------- 160 (357)
T ss_dssp CEEEEEEETTTEEEEEE--TT----SCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETT---------
T ss_pred CEEEEEEcCCCCEEEEE--CC----CEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCC---------
Confidence 47789999999866522 22 36999999988743211 111124789999999998876533
Q ss_pred CCCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCccccc
Q 004766 208 AGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFK 287 (732)
Q Consensus 208 ~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~ 287 (732)
..|.+|++.++. .+.....+...+..++|+|++..+++..... ..|.++|+.++...
T Consensus 161 ----------g~v~iwd~~~~~----~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~d----g~v~~wd~~~~~~~----- 217 (357)
T 4g56_B 161 ----------FSVKVWDLSQKA----VLKSYNAHSSEVNCVAACPGKDTIFLSCGED----GRILLWDTRKPKPA----- 217 (357)
T ss_dssp ----------SCEEEEETTTTE----EEEEECCCSSCEEEEEECTTCSSCEEEEETT----SCEEECCTTSSSCB-----
T ss_pred ----------CeEEEEECCCCc----EEEEEcCCCCCEEEEEEccCCCceeeeeccC----CceEEEECCCCcee-----
Confidence 258889987653 2222222334566899999998665554432 23778888764311
Q ss_pred ccCCCCCcEEeeecccc-eEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecC-CEEEE
Q 004766 288 KRDGLLPFVKLIDGFDA-QYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNL-NQMIV 365 (732)
Q Consensus 288 ~~~~~~~~~~l~~~~~~-~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~-~~l~~ 365 (732)
........... ....|+|++..++..... ...|..+|+.++.....+..+. ..+..+.++++ ..+++
T Consensus 218 ------~~~~~~~~~~~v~~v~~sp~~~~~la~g~~---d~~i~~wd~~~~~~~~~~~~~~--~~v~~l~~sp~~~~~la 286 (357)
T 4g56_B 218 ------TRIDFCASDTIPTSVTWHPEKDDTFACGDE---TGNVSLVNIKNPDSAQTSAVHS--QNITGLAYSYHSSPFLA 286 (357)
T ss_dssp ------CBCCCTTCCSCEEEEEECTTSTTEEEEEES---SSCEEEEESSCGGGCEEECCCS--SCEEEEEECSSSSCCEE
T ss_pred ------eeeeeccccccccchhhhhcccceEEEeec---ccceeEEECCCCcEeEEEeccc--eeEEEEEEcCCCCCEEE
Confidence 00011111111 122488887666554433 3468888998876445554443 56788899875 46777
Q ss_pred EEecCCeeEEEEEeCCCCceeeecccccceeeEeeccc-CCcEEEEEEecCCCCceEEEEECCCC
Q 004766 366 SYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARR-EDSVVFISFTSFLIPGIVYQCNLKTE 429 (732)
Q Consensus 366 ~~~~~g~~~l~~~d~~~g~~~~~l~~~~g~v~~~~~s~-d~~~l~~~~ss~~~p~~~y~~d~~~~ 429 (732)
+...++ .|++||+++++.++.+ .+.+.|..++++| |+.. +++.+. -..+..+++.+.
T Consensus 287 sgs~D~--~i~iwd~~~~~~~~~~-~H~~~V~~vafsP~d~~~-l~s~s~---Dg~v~iW~~~~~ 344 (357)
T 4g56_B 287 SISEDC--TVAVLDADFSEVFRDL-SHRDFVTGVAWSPLDHSK-FTTVGW---DHKVLHHHLPSE 344 (357)
T ss_dssp EEETTS--CEEEECTTSCEEEEEC-CCSSCEEEEEECSSSTTE-EEEEET---TSCEEEEECC--
T ss_pred EEeCCC--EEEEEECCCCcEeEEC-CCCCCEEEEEEeCCCCCE-EEEEcC---CCeEEEEECCCC
Confidence 777774 6889999888765444 2466788889998 5654 444443 246888887543
|
| >1llf_A Lipase 3; candida cylindracea cholesterol esterase, sterol ester acylh hydrolase; HET: NAG F23; 1.40A {Candida cylindracea} SCOP: c.69.1.17 PDB: 1cle_A* 1lpm_A* 1lpn_A* 1lpo_A* 1lpp_A* 1lps_A* 1crl_A* 1trh_A* 3rar_A* 1gz7_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=1.2e-12 Score=144.61 Aligned_cols=227 Identities=18% Similarity=0.193 Sum_probs=134.0
Q ss_pred EEEEEEEcCCCCCCCCccEEEEEcCCCCccCCC-CcChhH---HHHHHhcCcEEEEEcccCCC-CC--chhHHhcccccC
Q 004766 465 IPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTP-SFSVSR---TILMRHLGAVFCIANIRGGG-EY--GEEWHKGGALAK 537 (732)
Q Consensus 465 i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~-~~~~~~---~~~l~~~G~~v~~~~~rG~g-~~--g~~~~~~~~~~~ 537 (732)
+.+.++.|+.....++.|+||++|||....... .+.... ..+..+.|++|+.+|||.+. +| +.+... ...
T Consensus 98 l~l~v~~P~~~~~~~~~Pv~v~iHGGg~~~g~~~~~~~~~l~~~~~~~~~~~vvv~~nYRl~~~gf~~~~~~~~---~~~ 174 (534)
T 1llf_A 98 LTINVVRPPGTKAGANLPVMLWIFGGGFEIGSPTIFPPAQMVTKSVLMGKPIIHVAVNYRVASWGFLAGDDIKA---EGS 174 (534)
T ss_dssp CEEEEEECTTCCTTCCEEEEEEECCSTTTSCCGGGSCCHHHHHHHHHTTCCCEEEEECCCCHHHHHCCSHHHHH---HTC
T ss_pred eEEEEEECCCCCCCCCceEEEEEeCCCcccCCCcccCchHHHHHHHhcCCCEEEEEeCCCCCCCCCCCcccccc---cCC
Confidence 566778887654456789999999985432222 233321 11223368999999999753 11 111111 123
Q ss_pred CccHHHHHHHHHHHHHHc---CCCCCCcEEEEecChhHHHHHHHHhhC--------CCeeeEEEEcCCcccccccccCCC
Q 004766 538 KQNCFDDFISASEYLISA---GYTQSRKLCIEGGSNGGLLVGACINQR--------PDLFGCALAHVGVMDMLRYHKFTI 606 (732)
Q Consensus 538 ~~~~~~D~~~~~~~l~~~---~~~d~~~i~i~G~S~GG~l~~~~~~~~--------p~~f~a~v~~~p~~d~~~~~~~~~ 606 (732)
....+.|+.+|++|+.++ --.||+||.|+|+|+||.+++.++... +.+|+++|+.+|............
T Consensus 175 ~n~gl~D~~~Al~wv~~ni~~fggDp~~Vti~G~SaGg~~~~~~l~~~~~~~~~~~~~lf~~ai~~Sg~~~~~~~~~~~~ 254 (534)
T 1llf_A 175 GNAGLKDQRLGMQWVADNIAGFGGDPSKVTIFGESAGSMSVLCHLIWNDGDNTYKGKPLFRAGIMQSGAMVPSDPVDGTY 254 (534)
T ss_dssp TTHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHGGGGCCEETTEESCSEEEEESCCSCCCCCTTSHH
T ss_pred CchhHHHHHHHHHHHHHHHHHhCCCcccEEEEEECHhHHHHHHHHcCCCccccccccchhHhHhhhccCcccCCCcChHH
Confidence 345689999999999876 236999999999999999888777653 568999999998532211110000
Q ss_pred CC----ccccccCCCCCHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhcCC
Q 004766 607 GH----AWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTS 682 (732)
Q Consensus 607 ~~----~~~~~~g~p~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~ 682 (732)
.. ......|++...+..+.|++.++-..++.... ...........+.....-|..+.+.++.++.++.+..
T Consensus 255 ~~~~~~~~~~~~gc~~~~~~l~cLr~~~~~~l~~a~~~-~~~~~~~~~~~~~f~P~~Dg~~l~~~p~~~~~~g~~~---- 329 (534)
T 1llf_A 255 GNEIYDLFVSSAGCGSASDKLACLRSASSDTLLDATNN-TPGFLAYSSLRLSYLPRPDGKNITDDMYKLVRDGKYA---- 329 (534)
T ss_dssp HHHHHHHHHHHTTCTTCSSHHHHHHHSCHHHHHHHHHT-SCCTTSTTTTSCSSCCCCCSSSSCSCHHHHHHTTCSC----
T ss_pred HHHHHHHHHHHhCCCCcHHHHHHHHcCCHHHHHHHHHh-cccccccccccccceeecCCccccCCHHHHHHcCCCC----
Confidence 00 11133566543345666766654322211000 0000000000112233447778888888776654433
Q ss_pred CCCCCCCCCEEEEEeCCCCCCCC
Q 004766 683 LENSPQTNPIIGRIERKAGHGVG 705 (732)
Q Consensus 683 ~~~~~~~~~~~~~~~~~~gH~~~ 705 (732)
++|+.+-...++||.+.
T Consensus 330 ------~vp~l~G~~~~Eg~~f~ 346 (534)
T 1llf_A 330 ------SVPVIIGDQNDEGTIFG 346 (534)
T ss_dssp ------CCCEEEEEETBTTHHHH
T ss_pred ------CCCEEEEEecCchhhhh
Confidence 78999999999998763
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=99.24 E-value=4.8e-09 Score=109.77 Aligned_cols=224 Identities=9% Similarity=0.001 Sum_probs=142.7
Q ss_pred EEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCce---eccc--ccceeeeeEEEEeCCcEEEEEEecCCCCCCCCC
Q 004766 133 ALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIV---EADA--LSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMD 207 (732)
Q Consensus 133 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~---~~~~--~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~ 207 (732)
.+..+.|||||++||.... ...|++||+.+++. +... ........+.|++|++ |+....
T Consensus 99 ~v~~~~~s~~~~~l~s~~~-----d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~---------- 162 (340)
T 1got_B 99 WVMTCAYAPSGNYVACGGL-----DNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSG---------- 162 (340)
T ss_dssp CEEEEEECTTSSEEEEEET-----TCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEET----------
T ss_pred cEEEEEECCCCCEEEEEeC-----CCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEEC----------
Confidence 3667899999999886632 24899999987641 1111 1111246788999886 554432
Q ss_pred CCCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCccccc
Q 004766 208 AGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFK 287 (732)
Q Consensus 208 ~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~ 287 (732)
...|.+|++.++.. +..+. .+...+..++|+|||++++..+.++ .+.++|+.++.
T Consensus 163 ---------d~~i~~wd~~~~~~--~~~~~--~h~~~v~~~~~~~~~~~l~sg~~d~-----~v~~wd~~~~~------- 217 (340)
T 1got_B 163 ---------DTTCALWDIETGQQ--TTTFT--GHTGDVMSLSLAPDTRLFVSGACDA-----SAKLWDVREGM------- 217 (340)
T ss_dssp ---------TSCEEEEETTTTEE--EEEEC--CCSSCEEEEEECTTSSEEEEEETTS-----CEEEEETTTCS-------
T ss_pred ---------CCcEEEEECCCCcE--EEEEc--CCCCceEEEEECCCCCEEEEEeCCC-----cEEEEECCCCe-------
Confidence 23588899876532 12232 2334567899999999887655433 37788987642
Q ss_pred ccCCCCCcEEeeecccce-EEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecCCEEEEE
Q 004766 288 KRDGLLPFVKLIDGFDAQ-YEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVS 366 (732)
Q Consensus 288 ~~~~~~~~~~l~~~~~~~-~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~~l~~~ 366 (732)
....+....... ...|+|+|+.|+..+.. ..|..+|+.++.....+..+.....+..+.+++++.++++
T Consensus 218 ------~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d----~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~ 287 (340)
T 1got_B 218 ------CRQTFTGHESDINAICFFPNGNAFATGSDD----ATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLA 287 (340)
T ss_dssp ------EEEEECCCSSCEEEEEECTTSSEEEEEETT----SCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEE
T ss_pred ------eEEEEcCCcCCEEEEEEcCCCCEEEEEcCC----CcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEE
Confidence 122222211111 22589999877755432 3588889877652222222221235788899987778888
Q ss_pred EecCCeeEEEEEeCCCCceeeecccccceeeEeecccCCcEEE
Q 004766 367 YLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVF 409 (732)
Q Consensus 367 ~~~~g~~~l~~~d~~~g~~~~~l~~~~g~v~~~~~s~d~~~l~ 409 (732)
...++ .|.+||..+++.+..+..+.+.|..+.+++++..++
T Consensus 288 g~~d~--~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~ 328 (340)
T 1got_B 288 GYDDF--NCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVA 328 (340)
T ss_dssp EETTS--EEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEE
T ss_pred ECCCC--eEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEE
Confidence 87774 789999887776666665677788889999987554
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=99.23 E-value=1.5e-09 Score=111.61 Aligned_cols=223 Identities=11% Similarity=0.004 Sum_probs=143.1
Q ss_pred EEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecccc-cceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCc
Q 004766 133 ALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADAL-SWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTE 211 (732)
Q Consensus 133 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~-~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~ 211 (732)
.+....|+|||++|+... ...+|++||+.+|+.+.... .......++|+||++.|+....+
T Consensus 57 ~v~~~~~~~~~~~l~s~s-----~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D------------- 118 (304)
T 2ynn_A 57 PVRAGKFIARKNWIIVGS-----DDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDD------------- 118 (304)
T ss_dssp CEEEEEEEGGGTEEEEEE-----TTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETT-------------
T ss_pred cEEEEEEeCCCCEEEEEC-----CCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCC-------------
Confidence 366889999999988653 22589999999998543221 12234789999999988866533
Q ss_pred ccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEec-CCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccC
Q 004766 212 TDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTE-DGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRD 290 (732)
Q Consensus 212 ~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~ 290 (732)
..|.+|++.++... ...+. .+...+..++|+| |+..|+..+.+ ..|.++|+.+..
T Consensus 119 ------~~v~lWd~~~~~~~-~~~~~--~h~~~v~~v~~~p~~~~~l~sgs~D-----~~v~iwd~~~~~---------- 174 (304)
T 2ynn_A 119 ------LTVKLWNWENNWAL-EQTFE--GHEHFVMCVAFNPKDPSTFASGCLD-----RTVKVWSLGQST---------- 174 (304)
T ss_dssp ------SCEEEEEGGGTTEE-EEEEC--CCCSCEEEEEECTTCTTEEEEEETT-----SEEEEEETTCSS----------
T ss_pred ------CeEEEEECCCCcch-hhhhc--ccCCcEEEEEECCCCCCEEEEEeCC-----CeEEEEECCCCC----------
Confidence 35888898764321 12232 2334567899999 56776654432 347888886532
Q ss_pred CCCCcEEeeecccce--EEEEEe--cCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecCCEEEEE
Q 004766 291 GLLPFVKLIDGFDAQ--YEVIAN--DDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVS 366 (732)
Q Consensus 291 ~~~~~~~l~~~~~~~--~~~~s~--dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~~l~~~ 366 (732)
+...+..+.... ...+++ ++..|+..+. ...|..+|+.++.....+..+. ..+..+.+.+++.++++
T Consensus 175 ---~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~----D~~i~iWd~~~~~~~~~~~~h~--~~v~~~~~~p~~~~l~s 245 (304)
T 2ynn_A 175 ---PNFTLTTGQERGVNYVDYYPLPDKPYMITASD----DLTIKIWDYQTKSCVATLEGHM--SNVSFAVFHPTLPIIIS 245 (304)
T ss_dssp ---CSEEEECCCTTCEEEEEECCSTTCCEEEEEET----TSEEEEEETTTTEEEEEEECCS--SCEEEEEECSSSSEEEE
T ss_pred ---ccceeccCCcCcEEEEEEEEcCCCCEEEEEcC----CCeEEEEeCCCCccceeeCCCC--CCEEEEEECCCCCEEEE
Confidence 122232222222 223555 4555544332 3468889998876445555554 56778888887778888
Q ss_pred EecCCeeEEEEEeCCCCceeeecccccceeeEeecccCCcEE
Q 004766 367 YLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVV 408 (732)
Q Consensus 367 ~~~~g~~~l~~~d~~~g~~~~~l~~~~g~v~~~~~s~d~~~l 408 (732)
...++ .|.+||+.+++..+.+..+...+..+++.+++...
T Consensus 246 ~s~Dg--~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (304)
T 2ynn_A 246 GSEDG--TLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKN 285 (304)
T ss_dssp EETTS--CEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGG
T ss_pred EcCCC--eEEEEECCCCceeeeccCCCccEEEEEECCCCCce
Confidence 88885 68899998888777776655556677767776543
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.23 E-value=2e-09 Score=121.20 Aligned_cols=219 Identities=12% Similarity=0.086 Sum_probs=141.8
Q ss_pred EEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcc
Q 004766 133 ALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTET 212 (732)
Q Consensus 133 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~ 212 (732)
.+..+.+||||++||.... ...|++||..+...............++|+|||+.|+....+
T Consensus 346 ~v~~~~~s~~g~~l~~~~~-----dg~v~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d-------------- 406 (577)
T 2ymu_A 346 SVWGVAFSPDGQTIASASD-----DKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDD-------------- 406 (577)
T ss_dssp CEEEEEECTTSSEEEEEET-----TSEEEEEETTCCEEEEEECCSSCEEEEEECTTSSCEEEEETT--------------
T ss_pred CEEEEEECCCCCEEEEEeC-----CCEEEEEcCCCCEEEEecCCCCCeEEEEECCCCCEEEEEeCC--------------
Confidence 4667899999999987642 237899996543222212122234789999999998876532
Q ss_pred cCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCC
Q 004766 213 DSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGL 292 (732)
Q Consensus 213 ~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~ 292 (732)
..|.+|+.... .+..+. .+...+..++||||+++|+....+ ..+.++++.+.
T Consensus 407 -----~~v~~~~~~~~---~~~~~~--~~~~~v~~~~~s~d~~~l~~~~~d-----~~v~~w~~~~~------------- 458 (577)
T 2ymu_A 407 -----KTVKLWNRNGQ---LLQTLT--GHSSSVWGVAFSPDDQTIASASDD-----KTVKLWNRNGQ------------- 458 (577)
T ss_dssp -----SEEEEECTTCC---EEEEEE--CCSSCEEEEEECTTSSEEEEEETT-----SEEEEEETTSC-------------
T ss_pred -----CEEEEEeCCCC---EEEEec--CCCCCeEEEEECCCCCEEEEEcCC-----CEEEEEECCCC-------------
Confidence 35777775422 111222 223345689999999998876543 34777786542
Q ss_pred CCcEEeeecccceE-EEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecCCEEEEEEecCC
Q 004766 293 LPFVKLIDGFDAQY-EVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDV 371 (732)
Q Consensus 293 ~~~~~l~~~~~~~~-~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~~l~~~~~~~g 371 (732)
....+........ ..|+|||+.|+..+. +..|..+|..+ .....+..+. ..+..+.+++++.++++...++
T Consensus 459 -~~~~~~~~~~~v~~~~~spd~~~las~~~----d~~i~iw~~~~-~~~~~~~~h~--~~v~~l~~s~dg~~l~s~~~dg 530 (577)
T 2ymu_A 459 -LLQTLTGHSSSVRGVAFSPDGQTIASASD----DKTVKLWNRNG-QLLQTLTGHS--SSVRGVAFSPDGQTIASASDDK 530 (577)
T ss_dssp -EEEEEECCSSCEEEEEECTTSCEEEEEET----TSEEEEEETTS-CEEEEEECCS--SCEEEEEECTTSSCEEEEETTS
T ss_pred -EEEEEcCCCCCEEEEEEcCCCCEEEEEeC----CCEEEEEcCCC-CEEEEEeCCC--CCEEEEEEcCCCCEEEEEECcC
Confidence 1223332222212 258999987775443 23677788654 3345555554 5688899998777777887775
Q ss_pred eeEEEEEeCCCCceeeecccccceeeEeecccCCcEEE
Q 004766 372 KYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVF 409 (732)
Q Consensus 372 ~~~l~~~d~~~g~~~~~l~~~~g~v~~~~~s~d~~~l~ 409 (732)
.|++||.. |+.+..+..+.+.|..+.+++|++.|+
T Consensus 531 --~v~lwd~~-~~~~~~~~~h~~~v~~~~fs~dg~~l~ 565 (577)
T 2ymu_A 531 --TVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDGQTIA 565 (577)
T ss_dssp --EEEEECTT-SCEEEEEECCSSCEEEEEECTTSSCEE
T ss_pred --EEEEEeCC-CCEEEEEcCCCCCEEEEEEcCCCCEEE
Confidence 68899974 777677766677788899999998654
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.23 E-value=1e-09 Score=114.81 Aligned_cols=243 Identities=11% Similarity=0.088 Sum_probs=139.9
Q ss_pred eEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecccccce--eeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCccc
Q 004766 136 KVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWF--KFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETD 213 (732)
Q Consensus 136 ~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~~~~--~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~ 213 (732)
++.++++++.++... . + .+|+++|+++++.+....... ....++|+|||+.++++..
T Consensus 4 g~~~~~~~~~~v~~~-~--~--~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~---------------- 62 (349)
T 1jmx_B 4 GPALKAGHEYMIVTN-Y--P--NNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNN---------------- 62 (349)
T ss_dssp CCCCCTTCEEEEEEE-T--T--TEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEET----------------
T ss_pred cccccCCCEEEEEeC-C--C--CeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeC----------------
Confidence 456788877555332 1 2 389999999998653221111 2367999999998887642
Q ss_pred CCcccEEEEEECCCCCCCCeEEEecCCC----CeeEEEeEEecCCcEEEEEEecC----C---cceEEEEEEeCCCCCCC
Q 004766 214 SNLYHEFYYHFLGTKQSEDILCWKDPEH----PKYIFSGHVTEDGQYLVMCIEEN----C---DPVNKVYYCDLSALPEG 282 (732)
Q Consensus 214 ~~~~~~v~~~~lgt~~~~~~~v~~~~~~----~~~~~~~~~SpDg~~l~~~~~~~----~---~~~~~l~~~d~~~~~~~ 282 (732)
....|+++++.++... ........ ......+++||||++|++..... . .....|+++|++++...
T Consensus 63 --~~~~i~~~d~~t~~~~--~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~ 138 (349)
T 1jmx_B 63 --HYGDIYGIDLDTCKNT--FHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEA 138 (349)
T ss_dssp --TTTEEEEEETTTTEEE--EEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGB
T ss_pred --CCCcEEEEeCCCCcEE--EEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCcccc
Confidence 2346899998765321 12222111 01123678999999998876430 0 00256999998763210
Q ss_pred cccccccCCCCCcEEeeecccceEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCC--------------
Q 004766 283 LEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAE-------------- 348 (732)
Q Consensus 283 ~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~-------------- 348 (732)
................|+|||+ +|+..+ .|+++|+++++. ...++...
T Consensus 139 ----------~~~~~~~~~~~~~~~~~s~dg~-l~~~~~------~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 200 (349)
T 1jmx_B 139 ----------KPVRTFPMPRQVYLMRAADDGS-LYVAGP------DIYKMDVKTGKY-TVALPLRNWNRKGYSAPDVLYF 200 (349)
T ss_dssp ----------CCSEEEECCSSCCCEEECTTSC-EEEESS------SEEEECTTTCCE-EEEECSTTCCCTTBCCCBCCCC
T ss_pred ----------ceeeeccCCCcccceeECCCCc-EEEccC------cEEEEeCCCCce-eccccccccCCccccCccceee
Confidence 1111221111122224899998 666321 388888877652 22222110
Q ss_pred -----------------------------------------------------CCceeEEEEec-CCEEEEEEecCCeeE
Q 004766 349 -----------------------------------------------------RDVLESATAVN-LNQMIVSYLSDVKYV 374 (732)
Q Consensus 349 -----------------------------------------------------~~~l~~~~~~~-~~~l~~~~~~~g~~~ 374 (732)
.....++.+++ ++..++.. ...
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~----~~~ 276 (349)
T 1jmx_B 201 WPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV----LNR 276 (349)
T ss_dssp CCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE----ESE
T ss_pred ecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE----cCe
Confidence 00122334445 54433333 358
Q ss_pred EEEEeCCCCceeeecccccceeeEeecccCCcEEEEEEecCCCCceEEEEECCCCC
Q 004766 375 LQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 430 (732)
Q Consensus 375 l~~~d~~~g~~~~~l~~~~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~~ 430 (732)
|++||+.+++.++.+..+ ..+..+.++++++.+++. + .-..++.+|+.+++
T Consensus 277 v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~--~--~~~~v~v~d~~~~~ 327 (349)
T 1jmx_B 277 LAKYDLKQRKLIKAANLD-HTYYCVAFDKKGDKLYLG--G--TFNDLAVFNPDTLE 327 (349)
T ss_dssp EEEEETTTTEEEEEEECS-SCCCEEEECSSSSCEEEE--S--BSSEEEEEETTTTE
T ss_pred EEEEECccCeEEEEEcCC-CCccceEECCCCCEEEEe--c--CCCeEEEEeccccc
Confidence 999999888765666543 234567888999888763 2 22789999998774
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=99.22 E-value=2.7e-09 Score=113.43 Aligned_cols=243 Identities=8% Similarity=-0.017 Sum_probs=146.9
Q ss_pred EEeEEECCCC-cEEEEEEeccCCceEEEEEEECCCCceeccc---ccceeeeeEEEEe-CCcEEEEEEecCCCCCCCCCC
Q 004766 134 LIKVSVSEDA-KYLAYALSYSGSDWATIKLMRIEDQIVEADA---LSWFKFSSIAWTH-DSKGFFYSRYPAPKEGKDMDA 208 (732)
Q Consensus 134 ~~~~~~SPDG-~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~---~~~~~~~~~~Wsp-Dg~~l~y~~~~~~~~~~~~~~ 208 (732)
+..++||||| ++||.... + ..|+|||+.+++..... ........++|+| |++.|+....
T Consensus 76 v~~~~~~~~~~~~l~s~~~-d----g~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~----------- 139 (383)
T 3ei3_B 76 VTSLEWHPTHPTTVAVGSK-G----GDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSI----------- 139 (383)
T ss_dssp EEEEEECSSCTTEEEEEEB-T----SCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEET-----------
T ss_pred EEEEEECCCCCCEEEEEcC-C----CeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeC-----------
Confidence 5688999999 77776542 2 37999999988743221 1222357899999 5666665543
Q ss_pred CCcccCCcccEEEEEECCCCCCCCeEEEec-CCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCccccc
Q 004766 209 GTETDSNLYHEFYYHFLGTKQSEDILCWKD-PEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFK 287 (732)
Q Consensus 209 ~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~-~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~ 287 (732)
...|.+|++.+.. ...+.. ......+..++|+|||++|+....+ ..|+++|+.+.
T Consensus 140 --------d~~i~iwd~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~-------- 195 (383)
T 3ei3_B 140 --------RGATTLRDFSGSV---IQVFAKTDSWDYWYCCVDVSVSRQMLATGDST-----GRLLLLGLDGH-------- 195 (383)
T ss_dssp --------TTEEEEEETTSCE---EEEEECCCCSSCCEEEEEEETTTTEEEEEETT-----SEEEEEETTSC--------
T ss_pred --------CCEEEEEECCCCc---eEEEeccCCCCCCeEEEEECCCCCEEEEECCC-----CCEEEEECCCC--------
Confidence 2368899987521 222222 2122456789999999998766533 35888898542
Q ss_pred ccCCCCCcEEeeecccceE-EEEEecCCeEEEEeCCCCCCceEEEEeCCCCC---CceEeccCCCCCceeEEEEec-CCE
Q 004766 288 KRDGLLPFVKLIDGFDAQY-EVIANDDTVFTFLTNKDAPKYKIIRVDLKEPN---DWFEVIPEAERDVLESATAVN-LNQ 362 (732)
Q Consensus 288 ~~~~~~~~~~l~~~~~~~~-~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~---~~~~l~~~~~~~~l~~~~~~~-~~~ 362 (732)
+...+........ ..|+|+++.+++.... ...|..+|+.+.. .......+. ..+..+.+++ ++.
T Consensus 196 ------~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~---d~~i~iwd~~~~~~~~~~~~~~~~~--~~v~~~~~s~~~~~ 264 (383)
T 3ei3_B 196 ------EIFKEKLHKAKVTHAEFNPRCDWLMATSSV---DATVKLWDLRNIKDKNSYIAEMPHE--KPVNAAYFNPTDST 264 (383)
T ss_dssp ------EEEEEECSSSCEEEEEECSSCTTEEEEEET---TSEEEEEEGGGCCSTTCEEEEEECS--SCEEEEEECTTTSC
T ss_pred ------EEEEeccCCCcEEEEEECCCCCCEEEEEeC---CCEEEEEeCCCCCcccceEEEecCC--CceEEEEEcCCCCC
Confidence 1333332222222 2589998844444433 3468888887632 122333443 5688899998 777
Q ss_pred EEEEEecCCeeEEEEEeCCCCceeeecccc-------cceeeEeecccCCcEEEEEEe-----cCCCCceEEEEECCCCC
Q 004766 363 MIVSYLSDVKYVLQIRDLKNGSLLHQLPIE-------IGSVNAISARREDSVVFISFT-----SFLIPGIVYQCNLKTET 430 (732)
Q Consensus 363 l~~~~~~~g~~~l~~~d~~~g~~~~~l~~~-------~g~v~~~~~s~d~~~l~~~~s-----s~~~p~~~y~~d~~~~~ 430 (732)
++++...+ ..|.+||+.+++....+... ...+ ...+++++..+.+.++ +-..-..++.||+.+++
T Consensus 265 ~l~~~~~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~~~~~~~~s~dg~~s~s~d~~i~iwd~~~~~ 341 (383)
T 3ei3_B 265 KLLTTDQR--NEIRVYSSYDWSKPDQIIIHPHRQFQHLTPI-KATWHPMYDLIVAGRYPDDQLLLNDKRTIDIYDANSGG 341 (383)
T ss_dssp EEEEEESS--SEEEEEETTBTTSCSEEEECCBCCCTTSCCC-CCEECSSSSEEEEECBCCTTTCTTCCCCEEEEETTTCC
T ss_pred EEEEEcCC--CcEEEEECCCCccccccccccccccccccce-EEeccCCCCceEEEecCCcccccCCCCeEEEEecCCCc
Confidence 77777776 47999999877654444321 1112 1234455554444433 22345789999998875
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=99.22 E-value=2.8e-09 Score=112.47 Aligned_cols=241 Identities=8% Similarity=-0.012 Sum_probs=147.9
Q ss_pred EEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCc--eecc-cccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCC
Q 004766 134 LIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQI--VEAD-ALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGT 210 (732)
Q Consensus 134 ~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~--~~~~-~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~ 210 (732)
+..++|||||++||.... ...|++||+++++ .+.. .........++|+||++.|+....+
T Consensus 11 i~~~~~s~~~~~l~~~~~-----d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d------------ 73 (372)
T 1k8k_C 11 ISCHAWNKDRTQIAICPN-----NHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTD------------ 73 (372)
T ss_dssp CCEEEECTTSSEEEEECS-----SSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETT------------
T ss_pred eEEEEECCCCCEEEEEeC-----CCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCC------------
Confidence 458899999999987632 2489999999885 3321 1122235789999999998877533
Q ss_pred cccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccC
Q 004766 211 ETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRD 290 (732)
Q Consensus 211 ~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~ 290 (732)
..|.+|++.++... ...........+..+.|+|||++|+....++. +.++++..+..
T Consensus 74 -------g~i~vwd~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~-----v~i~d~~~~~~--------- 130 (372)
T 1k8k_C 74 -------RNAYVWTLKGRTWK--PTLVILRINRAARCVRWAPNEKKFAVGSGSRV-----ISICYFEQEND--------- 130 (372)
T ss_dssp -------SCEEEEEEETTEEE--EEEECCCCSSCEEEEEECTTSSEEEEEETTSS-----EEEEEEETTTT---------
T ss_pred -------CeEEEEECCCCeee--eeEEeecCCCceeEEEECCCCCEEEEEeCCCE-----EEEEEecCCCc---------
Confidence 25788887654311 12222223345678999999999987764433 55666654210
Q ss_pred CCCCcEEeeecccceE--EEEEecCCeEEEEeCCCCCCceEEEEeCC------------------CCCCceEeccCCCCC
Q 004766 291 GLLPFVKLIDGFDAQY--EVIANDDTVFTFLTNKDAPKYKIIRVDLK------------------EPNDWFEVIPEAERD 350 (732)
Q Consensus 291 ~~~~~~~l~~~~~~~~--~~~s~dg~~l~~~s~~~~~~~~l~~~d~~------------------~~~~~~~l~~~~~~~ 350 (732)
......+.......+ ..|+|+++.|+..+.. ..|..+|+. .+.....+..+ ..
T Consensus 131 -~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 203 (372)
T 1k8k_C 131 -WWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCD----FKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSS--CG 203 (372)
T ss_dssp -EEEEEEECTTCCSCEEEEEECTTSSEEEEEETT----SCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCC--SS
T ss_pred -ceeeeeeecccCCCeeEEEEcCCCCEEEEEcCC----CCEEEEEcccccccccccccccccccchhhheEecCCC--CC
Confidence 000111111111222 2488988877765432 357777753 23322222222 35
Q ss_pred ceeEEEEecCCEEEEEEecCCeeEEEEEeCCCCceeeecccccceeeEeecccCCcEEEEEEecCCCCceEEEEECCC
Q 004766 351 VLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKT 428 (732)
Q Consensus 351 ~l~~~~~~~~~~l~~~~~~~g~~~l~~~d~~~g~~~~~l~~~~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~ 428 (732)
.+..+.+++++.++++...++ .|.+||+.+++.+..+..+...+..+.+++++..++.. + -..++.|++.+
T Consensus 204 ~v~~~~~~~~~~~l~~~~~d~--~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~---d~~i~i~~~~~ 274 (372)
T 1k8k_C 204 WVHGVCFSANGSRVAWVSHDS--TVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG--H---DCFPVLFTYDS 274 (372)
T ss_dssp CEEEEEECSSSSEEEEEETTT--EEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE--T---TSSCEEEEEET
T ss_pred eEEEEEECCCCCEEEEEeCCC--EEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE--e---CCeEEEEEccC
Confidence 678899988666777777774 68999998888766776666677788888888744322 2 24556666655
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.22 E-value=4.6e-09 Score=118.30 Aligned_cols=234 Identities=14% Similarity=0.100 Sum_probs=152.1
Q ss_pred EEEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCc
Q 004766 132 AALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTE 211 (732)
Q Consensus 132 ~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~ 211 (732)
..+..+.+||||++|+.... + ..|++||+.+...............++|+|||+.|+....+
T Consensus 304 ~~v~~~~~~~~~~~l~t~~~-d----~~i~~w~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d------------- 365 (577)
T 2ymu_A 304 SSVWGVAFSPDGQTIASASD-D----KTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDD------------- 365 (577)
T ss_dssp SCEEEEEECTTSSEEEEEET-T----SCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETT-------------
T ss_pred CCeEEEEECCCCCEEEEEeC-C----CeEEEEeCCCCeeEEEeCCCCCEEEEEECCCCCEEEEEeCC-------------
Confidence 34667899999999986642 2 36899998776643322222234679999999999876532
Q ss_pred ccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCC
Q 004766 212 TDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDG 291 (732)
Q Consensus 212 ~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 291 (732)
..|.+|+.... ++.....+...+..+++||||++|+....+ ..|.+++..+.
T Consensus 366 ------g~v~~~~~~~~-----~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d-----~~v~~~~~~~~------------ 417 (577)
T 2ymu_A 366 ------KTVKLWNRNGQ-----LLQTLTGHSSSVRGVAFSPDGQTIASASDD-----KTVKLWNRNGQ------------ 417 (577)
T ss_dssp ------SEEEEEETTCC-----EEEEEECCSSCEEEEEECTTSSCEEEEETT-----SEEEEECTTCC------------
T ss_pred ------CEEEEEcCCCC-----EEEEecCCCCCeEEEEECCCCCEEEEEeCC-----CEEEEEeCCCC------------
Confidence 25777775321 222212223345689999999998766533 34777775431
Q ss_pred CCCcEEeeecccceE-EEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecCCEEEEEEecC
Q 004766 292 LLPFVKLIDGFDAQY-EVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSD 370 (732)
Q Consensus 292 ~~~~~~l~~~~~~~~-~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~~l~~~~~~~ 370 (732)
....+........ ..|+||++.|+..+. +..|..+|+.+.. ...+..+. ..+..+.+++++.++++...+
T Consensus 418 --~~~~~~~~~~~v~~~~~s~d~~~l~~~~~----d~~v~~w~~~~~~-~~~~~~~~--~~v~~~~~spd~~~las~~~d 488 (577)
T 2ymu_A 418 --LLQTLTGHSSSVWGVAFSPDDQTIASASD----DKTVKLWNRNGQL-LQTLTGHS--SSVRGVAFSPDGQTIASASDD 488 (577)
T ss_dssp --EEEEEECCSSCEEEEEECTTSSEEEEEET----TSEEEEEETTSCE-EEEEECCS--SCEEEEEECTTSCEEEEEETT
T ss_pred --EEEEecCCCCCeEEEEECCCCCEEEEEcC----CCEEEEEECCCCE-EEEEcCCC--CCEEEEEEcCCCCEEEEEeCC
Confidence 1223332222222 248999988776543 2467788875443 45555554 568889999877788888777
Q ss_pred CeeEEEEEeCCCCceeeecccccceeeEeecccCCcEEEEEEecCCCCceEEEEECC
Q 004766 371 VKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLK 427 (732)
Q Consensus 371 g~~~l~~~d~~~g~~~~~l~~~~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~ 427 (732)
+ .|++|+.. |+.++.+..+...|..+.++||++.|+ +.+. -..+..||..
T Consensus 489 ~--~i~iw~~~-~~~~~~~~~h~~~v~~l~~s~dg~~l~-s~~~---dg~v~lwd~~ 538 (577)
T 2ymu_A 489 K--TVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQTIA-SASD---DKTVKLWNRN 538 (577)
T ss_dssp S--EEEEEETT-SCEEEEEECCSSCEEEEEECTTSSCEE-EEET---TSEEEEECTT
T ss_pred C--EEEEEcCC-CCEEEEEeCCCCCEEEEEEcCCCCEEE-EEEC---cCEEEEEeCC
Confidence 4 68889975 777677776677788899999998665 3332 2568888863
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.21 E-value=1.4e-09 Score=114.09 Aligned_cols=227 Identities=11% Similarity=0.004 Sum_probs=133.1
Q ss_pred EEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecc----cccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCC
Q 004766 134 LIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEAD----ALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAG 209 (732)
Q Consensus 134 ~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~----~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~ 209 (732)
+..++|||||++||.... ..+|+|||++++..... .........++|+|||+.|+....+.
T Consensus 19 v~~l~~sp~g~~las~~~-----D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~---------- 83 (345)
T 3fm0_A 19 CWFLAWNPAGTLLASCGG-----DRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDA---------- 83 (345)
T ss_dssp EEEEEECTTSSCEEEEET-----TSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTS----------
T ss_pred EEEEEECCCCCEEEEEcC-----CCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCC----------
Confidence 567899999999986632 24799999988763211 11112357899999999998876443
Q ss_pred CcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCccccccc
Q 004766 210 TETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKR 289 (732)
Q Consensus 210 ~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~ 289 (732)
.+.+|++.++..+ .+.....+...+..++|+|||++|+..+.++. +.++|+.++..
T Consensus 84 ---------~v~iw~~~~~~~~--~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~-----v~iwd~~~~~~-------- 139 (345)
T 3fm0_A 84 ---------TTCIWKKNQDDFE--CVTTLEGHENEVKSVAWAPSGNLLATCSRDKS-----VWVWEVDEEDE-------- 139 (345)
T ss_dssp ---------CEEEEEECCC-EE--EEEEECCCSSCEEEEEECTTSSEEEEEETTSC-----EEEEEECTTSC--------
T ss_pred ---------cEEEEEccCCCeE--EEEEccCCCCCceEEEEeCCCCEEEEEECCCe-----EEEEECCCCCC--------
Confidence 4677777654322 22222233445678999999999887664433 77777765320
Q ss_pred CCCCCcEEeeecccc-eEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCC--CceEeccCCCCCceeEEEEecCCEEEEE
Q 004766 290 DGLLPFVKLIDGFDA-QYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPN--DWFEVIPEAERDVLESATAVNLNQMIVS 366 (732)
Q Consensus 290 ~~~~~~~~l~~~~~~-~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~--~~~~l~~~~~~~~l~~~~~~~~~~l~~~ 366 (732)
......+...... ....|+|+++.|+..+..+ .|..+++.++. ....+..+. ..+..+.+++++.++++
T Consensus 140 --~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~----~i~~w~~~~~~~~~~~~~~~h~--~~v~~l~~sp~g~~l~s 211 (345)
T 3fm0_A 140 --YECVSVLNSHTQDVKHVVWHPSQELLASASYDD----TVKLYREEEDDWVCCATLEGHE--STVWSLAFDPSGQRLAS 211 (345)
T ss_dssp --EEEEEEECCCCSCEEEEEECSSSSCEEEEETTS----CEEEEEEETTEEEEEEEECCCS--SCEEEEEECTTSSEEEE
T ss_pred --eEEEEEecCcCCCeEEEEECCCCCEEEEEeCCC----cEEEEEecCCCEEEEEEecCCC--CceEEEEECCCCCEEEE
Confidence 0001112111111 1235899998777655432 35556655543 112333333 56888999987777888
Q ss_pred EecCCeeEEEEEeCCCCce---------------eeeccc-ccceeeEeecccCCcEEE
Q 004766 367 YLSDVKYVLQIRDLKNGSL---------------LHQLPI-EIGSVNAISARREDSVVF 409 (732)
Q Consensus 367 ~~~~g~~~l~~~d~~~g~~---------------~~~l~~-~~g~v~~~~~s~d~~~l~ 409 (732)
...++ .|.+|+...+.. +..+.. +...+..+.+++++..++
T Consensus 212 ~s~D~--~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~ 268 (345)
T 3fm0_A 212 CSDDR--TVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALA 268 (345)
T ss_dssp EETTS--CEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEE
T ss_pred EeCCC--eEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEE
Confidence 88885 466666421111 011111 234566777888877554
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=99.21 E-value=8.1e-10 Score=116.97 Aligned_cols=243 Identities=9% Similarity=0.004 Sum_probs=148.5
Q ss_pred EECCCCcEEEEEEecc------CCceEEEEEEECCCCce-ec-----ccc----cceeeeeEEEEeCCcEEEEEEecCCC
Q 004766 138 SVSEDAKYLAYALSYS------GSDWATIKLMRIEDQIV-EA-----DAL----SWFKFSSIAWTHDSKGFFYSRYPAPK 201 (732)
Q Consensus 138 ~~SPDG~~la~~~~~~------G~e~~~i~v~dl~~g~~-~~-----~~~----~~~~~~~~~WspDg~~l~y~~~~~~~ 201 (732)
+++|+++.++...+.+ |+...++++|++.++.. +. ... .......++|||||+.|+..+.
T Consensus 78 s~~~~~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~---- 153 (365)
T 4h5i_A 78 AIDASKGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASS---- 153 (365)
T ss_dssp EEEEETTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEES----
T ss_pred EEEeCCCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEEC----
Confidence 4567788877765432 33345788888766531 11 000 0001246899999999987752
Q ss_pred CCCCCCCCCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCC
Q 004766 202 EGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPE 281 (732)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~ 281 (732)
.....|++|++.+... +..++. ...+.+++|||||++|+..+. + .+.+++..++..
T Consensus 154 -------------~~d~~i~iwd~~~~~~--~~~~~~---~~~V~~v~fspdg~~l~s~s~-~-----~~~~~~~~~~~~ 209 (365)
T 4h5i_A 154 -------------KVPAIMRIIDPSDLTE--KFEIET---RGEVKDLHFSTDGKVVAYITG-S-----SLEVISTVTGSC 209 (365)
T ss_dssp -------------CSSCEEEEEETTTTEE--EEEEEC---SSCCCEEEECTTSSEEEEECS-S-----CEEEEETTTCCE
T ss_pred -------------CCCCEEEEeECCCCcE--EEEeCC---CCceEEEEEccCCceEEeccc-e-----eEEEEEeccCcc
Confidence 2345789999877532 122222 223568999999999876542 1 245556554321
Q ss_pred CcccccccCCCCCcEEeee-cccceE--EEEEecCCeEEEEeCCCCCCceEEEEeCCCCCC----ceEeccCCCCCceeE
Q 004766 282 GLEGFKKRDGLLPFVKLID-GFDAQY--EVIANDDTVFTFLTNKDAPKYKIIRVDLKEPND----WFEVIPEAERDVLES 354 (732)
Q Consensus 282 ~~~~~~~~~~~~~~~~l~~-~~~~~~--~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~----~~~l~~~~~~~~l~~ 354 (732)
....+. .....+ ..|+|||+.++..+..+.....+..+++..... ...+..+ ...+..
T Consensus 210 -------------~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~--~~~V~~ 274 (365)
T 4h5i_A 210 -------------IARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNR--FKGITS 274 (365)
T ss_dssp -------------EEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESS--CSCEEE
T ss_pred -------------eeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCC--CCCeEe
Confidence 111111 111111 248999988887665554455677777655431 1122233 256788
Q ss_pred EEEecCCEEEEEEecCCeeEEEEEeCCCCceeeec-ccccceeeEeecccCCcEEEEEEecCCCCceEEEEECCCC
Q 004766 355 ATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQL-PIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTE 429 (732)
Q Consensus 355 ~~~~~~~~l~~~~~~~g~~~l~~~d~~~g~~~~~l-~~~~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~ 429 (732)
+.+++++.++++...|+ .|++||+.+++.+..+ ..+.+.|..++++||++.|+ +.+.. .++.++|+...
T Consensus 275 ~~~Spdg~~lasgs~D~--~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~la-S~S~D---~tvrvw~ip~~ 344 (365)
T 4h5i_A 275 MDVDMKGELAVLASNDN--SIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVA-SVSAA---NTIHIIKLPLN 344 (365)
T ss_dssp EEECTTSCEEEEEETTS--CEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEE-EEETT---SEEEEEECCTT
T ss_pred EEECCCCCceEEEcCCC--EEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEE-EEeCC---CeEEEEEcCCC
Confidence 99999888888888874 6899999988876654 44577888999999998553 44432 46777777543
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.20 E-value=5.1e-09 Score=111.99 Aligned_cols=216 Identities=19% Similarity=0.104 Sum_probs=135.4
Q ss_pred EEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecccc-cceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCc
Q 004766 133 ALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADAL-SWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTE 211 (732)
Q Consensus 133 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~-~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~ 211 (732)
.+..+.|||||++||.... ...|++||+++++.+.... .......++|+|||+.|+....+
T Consensus 125 ~v~~v~~s~dg~~l~s~~~-----d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d------------- 186 (393)
T 1erj_A 125 YIRSVCFSPDGKFLATGAE-----DRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGD------------- 186 (393)
T ss_dssp BEEEEEECTTSSEEEEEET-----TSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETT-------------
T ss_pred eEEEEEECCCCCEEEEEcC-----CCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCC-------------
Confidence 4778999999999986532 2479999999988543211 12234789999999988876533
Q ss_pred ccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEec-CCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccC
Q 004766 212 TDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTE-DGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRD 290 (732)
Q Consensus 212 ~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~ 290 (732)
..|.+|++.++.. ...+... .....++++| ||++|+..+.++ .+.++|+.++..
T Consensus 187 ------~~v~iwd~~~~~~--~~~~~~~---~~v~~~~~~~~~~~~l~~~s~d~-----~v~iwd~~~~~~--------- 241 (393)
T 1erj_A 187 ------RTVRIWDLRTGQC--SLTLSIE---DGVTTVAVSPGDGKYIAAGSLDR-----AVRVWDSETGFL--------- 241 (393)
T ss_dssp ------SEEEEEETTTTEE--EEEEECS---SCEEEEEECSTTCCEEEEEETTS-----CEEEEETTTCCE---------
T ss_pred ------CcEEEEECCCCee--EEEEEcC---CCcEEEEEECCCCCEEEEEcCCC-----cEEEEECCCCcE---------
Confidence 3688999877532 1222222 2346789999 899887665443 377788876421
Q ss_pred CCCCcEEe-------eecccceE-EEEEecCCeEEEEeCCCCCCceEEEEeCCCCC------------CceEeccCCCCC
Q 004766 291 GLLPFVKL-------IDGFDAQY-EVIANDDTVFTFLTNKDAPKYKIIRVDLKEPN------------DWFEVIPEAERD 350 (732)
Q Consensus 291 ~~~~~~~l-------~~~~~~~~-~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~------------~~~~l~~~~~~~ 350 (732)
...+ ........ ..|+|+|+.|+..+. ...|..+|+.+.. ....+..+. .
T Consensus 242 ----~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~----d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~--~ 311 (393)
T 1erj_A 242 ----VERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL----DRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHK--D 311 (393)
T ss_dssp ----EEEEC------CCCSSCEEEEEECTTSSEEEEEET----TSEEEEEEC---------------CEEEEEECCS--S
T ss_pred ----EEeecccccCCCCCCCCEEEEEECCCCCEEEEEeC----CCEEEEEECCCCCCcccccCCCCCcceEEEeccc--C
Confidence 1111 11111111 248899987765443 2357777876532 112233333 4
Q ss_pred ceeEEEEecCCEEEEEEecCCeeEEEEEeCCCCceeeecccccceeeEeeccc
Q 004766 351 VLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARR 403 (732)
Q Consensus 351 ~l~~~~~~~~~~l~~~~~~~g~~~l~~~d~~~g~~~~~l~~~~g~v~~~~~s~ 403 (732)
.+..+.+++++.++++...++ .|++||+.+|+.+..+..+.+.|..+.+++
T Consensus 312 ~v~~~~~~~~~~~l~sgs~D~--~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~ 362 (393)
T 1erj_A 312 FVLSVATTQNDEYILSGSKDR--GVLFWDKKSGNPLLMLQGHRNSVISVAVAN 362 (393)
T ss_dssp CEEEEEECGGGCEEEEEETTS--EEEEEETTTCCEEEEEECCSSCEEEEEECS
T ss_pred cEEEEEECCCCCEEEEEeCCC--eEEEEECCCCeEEEEECCCCCCEEEEEecC
Confidence 567788887667777777774 789999988887666665556666666544
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.19 E-value=7.9e-09 Score=110.79 Aligned_cols=241 Identities=12% Similarity=0.038 Sum_probs=152.8
Q ss_pred EEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceeccc-ccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCc
Q 004766 133 ALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADA-LSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTE 211 (732)
Q Consensus 133 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~-~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~ 211 (732)
.+..++|||||++|+.... + ..|++||+.+++.+... ........++| +++.|+....
T Consensus 136 ~v~~v~~s~~~~~l~~~~~-d----g~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~-------------- 194 (401)
T 4aez_A 136 YVASVKWSHDGSFLSVGLG-N----GLVDIYDVESQTKLRTMAGHQARVGCLSW--NRHVLSSGSR-------------- 194 (401)
T ss_dssp CEEEEEECTTSSEEEEEET-T----SCEEEEETTTCCEEEEECCCSSCEEEEEE--ETTEEEEEET--------------
T ss_pred CEEEEEECCCCCEEEEECC-C----CeEEEEECcCCeEEEEecCCCCceEEEEE--CCCEEEEEcC--------------
Confidence 4678999999999987753 2 37999999998854322 12223467888 5666766543
Q ss_pred ccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCC
Q 004766 212 TDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDG 291 (732)
Q Consensus 212 ~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 291 (732)
...|++|++.+.... +..+.. +...+..+.|+|||++|+....++ .|.++|+.++.
T Consensus 195 -----dg~i~i~d~~~~~~~-~~~~~~--~~~~v~~~~~~~~~~~l~s~~~d~-----~v~iwd~~~~~----------- 250 (401)
T 4aez_A 195 -----SGAIHHHDVRIANHQ-IGTLQG--HSSEVCGLAWRSDGLQLASGGNDN-----VVQIWDARSSI----------- 250 (401)
T ss_dssp -----TSEEEEEETTSSSCE-EEEEEC--CSSCEEEEEECTTSSEEEEEETTS-----CEEEEETTCSS-----------
T ss_pred -----CCCEEEEecccCcce-eeEEcC--CCCCeeEEEEcCCCCEEEEEeCCC-----eEEEccCCCCC-----------
Confidence 346899998754321 222322 334567899999999988766443 38888987632
Q ss_pred CCCcEEeeeccc-ceEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecCCEEEEEEe--
Q 004766 292 LLPFVKLIDGFD-AQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYL-- 368 (732)
Q Consensus 292 ~~~~~~l~~~~~-~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~~l~~~~~-- 368 (732)
+...+..... .....|+|++..+++.... .....|..+|+.++.....+ .. ...+..+.+++++..++...
T Consensus 251 --~~~~~~~~~~~v~~~~~~p~~~~ll~~~~g-s~d~~i~i~d~~~~~~~~~~-~~--~~~v~~~~~s~~~~~l~~~~g~ 324 (401)
T 4aez_A 251 --PKFTKTNHNAAVKAVAWCPWQSNLLATGGG-TMDKQIHFWNAATGARVNTV-DA--GSQVTSLIWSPHSKEIMSTHGF 324 (401)
T ss_dssp --EEEEECCCSSCCCEEEECTTSTTEEEEECC-TTTCEEEEEETTTCCEEEEE-EC--SSCEEEEEECSSSSEEEEEECT
T ss_pred --ccEEecCCcceEEEEEECCCCCCEEEEecC-CCCCEEEEEECCCCCEEEEE-eC--CCcEEEEEECCCCCeEEEEeec
Confidence 1222222211 1223589988887776531 12457999999887633333 33 25688899998666665543
Q ss_pred cCCeeEEEEEeCCCCceeee--cccccceeeEeecccCCcEEEEEEecCCCCceEEEEECCCCC
Q 004766 369 SDVKYVLQIRDLKNGSLLHQ--LPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 430 (732)
Q Consensus 369 ~~g~~~l~~~d~~~g~~~~~--l~~~~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~~ 430 (732)
.+ ..|.+|++.+++.... +..+.+.+..+.+++++..++.. + .-..+..|++.+++
T Consensus 325 ~d--g~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~-~---~dg~i~iw~~~~~~ 382 (401)
T 4aez_A 325 PD--NNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTA-A---SDENLKFWRVYDGD 382 (401)
T ss_dssp TT--CEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEE-C---TTSEEEEEECCC--
T ss_pred CC--CcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEE-e---CCCcEEEEECCCCc
Confidence 44 4788899876654333 23345667788899999866533 2 23689999988774
|
| >2wj6_A 1H-3-hydroxy-4-oxoquinaldine 2,4-dioxygenase; oxidoreductase, alpha/beta hydrolase; HET: ZZ8 SRT; 2.00A {Arthrobacter nitroguajacolicus} PDB: 2wj4_A* 2wj3_A* 2wm2_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=3.8e-11 Score=121.85 Aligned_cols=116 Identities=12% Similarity=0.084 Sum_probs=80.9
Q ss_pred cCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCC
Q 004766 459 KDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKK 538 (732)
Q Consensus 459 ~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~ 538 (732)
.+| .++.+... +.+ ...|.||++||..++.. .|.. ....|+ .+|.|+++|.||.|..... ..
T Consensus 11 ~~g-~~l~y~~~-~~G----~~~p~vvllHG~~~~~~--~w~~-~~~~L~-~~~rvia~DlrGhG~S~~~--------~~ 72 (276)
T 2wj6_A 11 VFD-NKLSYIDN-QRD----TDGPAILLLPGWCHDHR--VYKY-LIQELD-ADFRVIVPNWRGHGLSPSE--------VP 72 (276)
T ss_dssp ETT-EEEEEEEC-CCC----CSSCEEEEECCTTCCGG--GGHH-HHHHHT-TTSCEEEECCTTCSSSCCC--------CC
T ss_pred eCC-eEEEEEEe-cCC----CCCCeEEEECCCCCcHH--HHHH-HHHHHh-cCCEEEEeCCCCCCCCCCC--------CC
Confidence 478 77765432 111 23488999999876543 4544 345577 7899999999998864321 12
Q ss_pred ccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhC-CCeeeEEEEcCC
Q 004766 539 QNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQR-PDLFGCALAHVG 594 (732)
Q Consensus 539 ~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~-p~~f~a~v~~~p 594 (732)
..+++++.+.+..|++. ...+++.++|+|+||.+++.++.++ |++++++|+..+
T Consensus 73 ~~~~~~~a~dl~~ll~~--l~~~~~~lvGhSmGG~va~~~A~~~~P~rv~~lvl~~~ 127 (276)
T 2wj6_A 73 DFGYQEQVKDALEILDQ--LGVETFLPVSHSHGGWVLVELLEQAGPERAPRGIIMDW 127 (276)
T ss_dssp CCCHHHHHHHHHHHHHH--HTCCSEEEEEEGGGHHHHHHHHHHHHHHHSCCEEEESC
T ss_pred CCCHHHHHHHHHHHHHH--hCCCceEEEEECHHHHHHHHHHHHhCHHhhceEEEecc
Confidence 23566666555555543 2335899999999999999999999 999999988754
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=1.7e-08 Score=112.43 Aligned_cols=251 Identities=12% Similarity=0.011 Sum_probs=151.1
Q ss_pred EEeEEECC----CCcEEEEEEeccCCceEEEEEEECCCCceeccccc------------ceeeeeEEEEeCCcEEEEEEe
Q 004766 134 LIKVSVSE----DAKYLAYALSYSGSDWATIKLMRIEDQIVEADALS------------WFKFSSIAWTHDSKGFFYSRY 197 (732)
Q Consensus 134 ~~~~~~SP----DG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~~------------~~~~~~~~WspDg~~l~y~~~ 197 (732)
...+.+|| ||++|+.+.... .+|.|||..+++.+..... ......+.+|||++.++++..
T Consensus 224 p~~va~sp~~~~dg~~l~v~~~~~----~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~ 299 (543)
T 1nir_A 224 ARSVESSKFKGYEDRYTIAGAYWP----PQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVK 299 (543)
T ss_dssp EEEEEECCSTTCTTTEEEEEEEES----SEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEET
T ss_pred cceEEeCCCcCCCCCEEEEEEccC----CeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEEC
Confidence 45788999 999886654222 3789999999886532111 112367899999998877642
Q ss_pred cCCCCCCCCCCCCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCC
Q 004766 198 PAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLS 277 (732)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~ 277 (732)
...+|++++..+.....+..... ..+..++.|||||++++..... .+.|.++|+.
T Consensus 300 ------------------~~g~i~vvd~~~~~~l~~~~i~~---~~~~~~~~~spdg~~l~va~~~----~~~v~v~D~~ 354 (543)
T 1nir_A 300 ------------------ETGKVLLVNYKDIDNLTVTSIGA---APFLHDGGWDSSHRYFMTAANN----SNKVAVIDSK 354 (543)
T ss_dssp ------------------TTTEEEEEECTTSSSCEEEEEEC---CSSCCCEEECTTSCEEEEEEGG----GTEEEEEETT
T ss_pred ------------------CCCeEEEEEecCCCcceeEEecc---CcCccCceECCCCCEEEEEecC----CCeEEEEECC
Confidence 23479999987653221111221 2234578999999998665432 2458889988
Q ss_pred CCCCCcccccccCCCCCcEEeeec----ccceEEEEEecCCeEEEEeCCCCCCceEEEEeCCC-------CCCceEeccC
Q 004766 278 ALPEGLEGFKKRDGLLPFVKLIDG----FDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKE-------PNDWFEVIPE 346 (732)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~-------~~~~~~l~~~ 346 (732)
+++. ...+..+ .......++|++..+|+..+.+ ...|.++|+++ .+..+++-.+
T Consensus 355 tg~l-------------~~~i~~g~~ph~g~g~~~~~p~~g~~~~s~~~~--d~~V~v~d~~~~~~~~~~~~~v~~l~~~ 419 (543)
T 1nir_A 355 DRRL-------------SALVDVGKTPHPGRGANFVHPKYGPVWSTSHLG--DGSISLIGTDPKNHPQYAWKKVAELQGQ 419 (543)
T ss_dssp TTEE-------------EEEEECSSSBCCTTCEEEEETTTEEEEEEEBSS--SSEEEEEECCTTTCTTTBTSEEEEEECS
T ss_pred CCeE-------------EEeeccCCCCCCCCCcccCCCCCccEEEeccCC--CceEEEEEeCCCCCchhcCeEEEEEEcC
Confidence 7531 1112111 1112233567767776654432 23577788776 2223333323
Q ss_pred CCCCceeEEEEecCCEEEEEEec-C----CeeEEEEEeCCCCcee-eeccc--------ccceeeEeecccCCcEEEEEE
Q 004766 347 AERDVLESATAVNLNQMIVSYLS-D----VKYVLQIRDLKNGSLL-HQLPI--------EIGSVNAISARREDSVVFISF 412 (732)
Q Consensus 347 ~~~~~l~~~~~~~~~~l~~~~~~-~----g~~~l~~~d~~~g~~~-~~l~~--------~~g~v~~~~~s~d~~~l~~~~ 412 (732)
. .....+.+++++..++.... + ....|.+||.++++.. +.|.. +...+..+.+++||++++++.
T Consensus 420 g--~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~ 497 (543)
T 1nir_A 420 G--GGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSV 497 (543)
T ss_dssp C--SCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEE
T ss_pred C--CCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEe
Confidence 2 22334667776444444331 1 1247999999988764 34321 133456788999999999876
Q ss_pred ec-CCCCceEEEEECCCCC
Q 004766 413 TS-FLIPGIVYQCNLKTET 430 (732)
Q Consensus 413 ss-~~~p~~~y~~d~~~~~ 430 (732)
-+ -.....|.++|..+++
T Consensus 498 ~~~~~~~~~i~v~D~~t~~ 516 (543)
T 1nir_A 498 WNGKNDSSALVVVDDKTLK 516 (543)
T ss_dssp ECCTTSCCEEEEEETTTTE
T ss_pred ecCCCCCCeEEEEECCCce
Confidence 43 2457899999998885
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.18 E-value=6.1e-10 Score=119.67 Aligned_cols=250 Identities=11% Similarity=0.016 Sum_probs=152.2
Q ss_pred EEEEeEEECCCCcEEEEEEeccCCceEEEEEEECCC---C-ceec-ccccceeeeeEEEEeC-CcEEEEEEecCCCCCCC
Q 004766 132 AALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIED---Q-IVEA-DALSWFKFSSIAWTHD-SKGFFYSRYPAPKEGKD 205 (732)
Q Consensus 132 ~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~---g-~~~~-~~~~~~~~~~~~WspD-g~~l~y~~~~~~~~~~~ 205 (732)
..+..+.|||||++||.... + ..|++||+.+ + +.+. ..........++|+|| ++.|+....
T Consensus 68 ~~v~~~~~s~~~~~l~~~~~-d----g~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~-------- 134 (416)
T 2pm9_A 68 SKFNDLDWSHNNKIIAGALD-N----GSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGN-------- 134 (416)
T ss_dssp SCEEEEEECSSSSCEEEEES-S----SCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECS--------
T ss_pred CceEEEEECCCCCeEEEEcc-C----CeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcC--------
Confidence 34778999999999987643 2 3789999987 2 2222 1112223478999999 665655432
Q ss_pred CCCCCcccCCcccEEEEEECCCCCC-----CCeEEEecCCCCeeEEEeEEecCC-cEEEEEEecCCcceEEEEEEeCCCC
Q 004766 206 MDAGTETDSNLYHEFYYHFLGTKQS-----EDILCWKDPEHPKYIFSGHVTEDG-QYLVMCIEENCDPVNKVYYCDLSAL 279 (732)
Q Consensus 206 ~~~~~~~~~~~~~~v~~~~lgt~~~-----~~~~v~~~~~~~~~~~~~~~SpDg-~~l~~~~~~~~~~~~~l~~~d~~~~ 279 (732)
...|++|++.+... ....+.....+...+..++|+|++ ..|+....+ ..|.++|+.++
T Consensus 135 -----------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~v~iwd~~~~ 198 (416)
T 2pm9_A 135 -----------NGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSS-----NFASIWDLKAK 198 (416)
T ss_dssp -----------SSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSS-----SCEEEEETTTT
T ss_pred -----------CCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCC-----CCEEEEECCCC
Confidence 23588888876541 101110011122344688999994 555443322 34888898763
Q ss_pred CCCcccccccCCCCCcEEeeec------cc-ceEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCC-CceEec-cCCCCC
Q 004766 280 PEGLEGFKKRDGLLPFVKLIDG------FD-AQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPN-DWFEVI-PEAERD 350 (732)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~l~~~------~~-~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~-~~~~l~-~~~~~~ 350 (732)
. ....+... .. .....|+|++..+++....++....|..+|+.++. ....+. .+ ..
T Consensus 199 ~-------------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~--~~ 263 (416)
T 2pm9_A 199 K-------------EVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGH--QK 263 (416)
T ss_dssp E-------------EEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCC--SS
T ss_pred C-------------cceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCc--cC
Confidence 2 11122111 11 11225899886555555444333368888988753 223332 23 35
Q ss_pred ceeEEEEec-CCEEEEEEecCCeeEEEEEeCCCCceeeecccccceeeEeecccCCcEEEEEEecCCCCceEEEEECCCC
Q 004766 351 VLESATAVN-LNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTE 429 (732)
Q Consensus 351 ~l~~~~~~~-~~~l~~~~~~~g~~~l~~~d~~~g~~~~~l~~~~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~ 429 (732)
.+..+.+++ ++.++++...++ .|++||+.+++.+..+..+.+.+..+.++++++.++++.+. -..+..||+.++
T Consensus 264 ~v~~~~~s~~~~~~l~s~~~dg--~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~---d~~i~iw~~~~~ 338 (416)
T 2pm9_A 264 GILSLDWCHQDEHLLLSSGRDN--TVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASF---DNKIEVQTLQNL 338 (416)
T ss_dssp CEEEEEECSSCSSCEEEEESSS--EEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCS---SSEEEEEESCCC
T ss_pred ceeEEEeCCCCCCeEEEEeCCC--CEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEec---CCcEEEEEccCC
Confidence 688899987 677777777774 68999998888767776566677788899998445444433 367888888766
Q ss_pred C
Q 004766 430 T 430 (732)
Q Consensus 430 ~ 430 (732)
+
T Consensus 339 ~ 339 (416)
T 2pm9_A 339 T 339 (416)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=99.18 E-value=4.1e-09 Score=119.49 Aligned_cols=244 Identities=9% Similarity=-0.044 Sum_probs=155.6
Q ss_pred EEeEEECCCCcEEEEEEeccCCceEEEEEEECCCC----ceec-cccccee-eeeEEEEe--CCcEEEEEEecCCCCCCC
Q 004766 134 LIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQ----IVEA-DALSWFK-FSSIAWTH--DSKGFFYSRYPAPKEGKD 205 (732)
Q Consensus 134 ~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g----~~~~-~~~~~~~-~~~~~Wsp--Dg~~l~y~~~~~~~~~~~ 205 (732)
+..++|||||++||+.. + ..|++||++++ +... ....... ...++|+| ||+.|+....+
T Consensus 21 v~~~~~spdg~~l~~~~--~----~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~d------- 87 (615)
T 1pgu_A 21 TTHLSYDPTTNAIAYPC--G----KSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDES------- 87 (615)
T ss_dssp CCCCEEETTTTEEEEEE--T----TEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETT-------
T ss_pred eeEEEECCCCCEEEEec--C----CeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCC-------
Confidence 45789999999999986 2 27999999988 5332 1122223 47899999 99988876533
Q ss_pred CCCCCcccCCcccEEEEEECCCCCC----CCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCC
Q 004766 206 MDAGTETDSNLYHEFYYHFLGTKQS----EDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPE 281 (732)
Q Consensus 206 ~~~~~~~~~~~~~~v~~~~lgt~~~----~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~ 281 (732)
..|.+|++.++.. +...+.........+..++|+|||++|+....+.. ....+++++...
T Consensus 88 ------------g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~-~~~~v~~~d~~~--- 151 (615)
T 1pgu_A 88 ------------GKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRD-NFGVFISWDSGN--- 151 (615)
T ss_dssp ------------SEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSS-CSEEEEETTTCC---
T ss_pred ------------CEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCC-CccEEEEEECCC---
Confidence 3578888754310 01122222222345678999999999988765432 235688877322
Q ss_pred CcccccccCCCCCcEEeeecccce-EEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCC---ceeEEEE
Q 004766 282 GLEGFKKRDGLLPFVKLIDGFDAQ-YEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERD---VLESATA 357 (732)
Q Consensus 282 ~~~~~~~~~~~~~~~~l~~~~~~~-~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~---~l~~~~~ 357 (732)
....+....... ...|+|+++.+++.... ...|..+|+.++.....+..+. . .+..+.+
T Consensus 152 ------------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---d~~v~vwd~~~~~~~~~~~~~~--~~~~~v~~~~~ 214 (615)
T 1pgu_A 152 ------------SLGEVSGHSQRINACHLKQSRPMRSMTVGD---DGSVVFYQGPPFKFSASDRTHH--KQGSFVRDVEF 214 (615)
T ss_dssp ------------EEEECCSCSSCEEEEEECSSSSCEEEEEET---TTEEEEEETTTBEEEEEECSSS--CTTCCEEEEEE
T ss_pred ------------cceeeecCCccEEEEEECCCCCcEEEEEeC---CCcEEEEeCCCcceeeeecccC--CCCceEEEEEE
Confidence 122222211111 12588988744444433 3468888987765333443333 3 6888999
Q ss_pred ecC-CEEEEEEecCCeeEEEEEeCCCCceeeec-c---cccceeeEeecccCCcEEEEEEecCCCCceEEEEECCCCC
Q 004766 358 VNL-NQMIVSYLSDVKYVLQIRDLKNGSLLHQL-P---IEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 430 (732)
Q Consensus 358 ~~~-~~l~~~~~~~g~~~l~~~d~~~g~~~~~l-~---~~~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~~ 430 (732)
+++ +.+++....++ .|++||+.+++.+..+ . ...+.+..+.++ ++..++.. +. -..+..+|+.+++
T Consensus 215 ~~~~~~~l~~~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~-~~---d~~i~~wd~~~~~ 285 (615)
T 1pgu_A 215 SPDSGEFVITVGSDR--KISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATV-GA---DATIRVWDVTTSK 285 (615)
T ss_dssp CSTTCCEEEEEETTC--CEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEE-ET---TSEEEEEETTTTE
T ss_pred CCCCCCEEEEEeCCC--eEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEE-cC---CCcEEEEECCCCc
Confidence 987 67777777764 7899999888876677 3 345667788888 77755533 32 2578999998774
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.18 E-value=9.4e-09 Score=106.95 Aligned_cols=249 Identities=12% Similarity=0.040 Sum_probs=137.5
Q ss_pred EeEEECCCCcEEEEEEeccCCceEEEEEEECC--CCceec--ccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCC
Q 004766 135 IKVSVSEDAKYLAYALSYSGSDWATIKLMRIE--DQIVEA--DALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGT 210 (732)
Q Consensus 135 ~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~--~g~~~~--~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~ 210 (732)
..++|||||++|+++...+ ..|.+|+++ +|+... ..........++|+|||+.|+++...
T Consensus 41 ~~~~~spdg~~l~~~~~~~----~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~------------ 104 (343)
T 1ri6_A 41 QPMVVSPDKRYLYVGVRPE----FRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYN------------ 104 (343)
T ss_dssp CCEEECTTSSEEEEEETTT----TEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETT------------
T ss_pred ceEEECCCCCEEEEeecCC----CeEEEEEecCCCCceeeccccccCCCCcEEEEcCCCCEEEEEecC------------
Confidence 4689999999988775432 267787776 666321 11111134789999999998887531
Q ss_pred cccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCC-CCCCccccccc
Q 004766 211 ETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSA-LPEGLEGFKKR 289 (732)
Q Consensus 211 ~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~-~~~~~~~~~~~ 289 (732)
...|++|++..+. ....+...... .....++|||||++|++.... ...|+++++.+ +..
T Consensus 105 ------~~~i~~~d~~~~~-~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~----~~~v~~~d~~~~~~~-------- 164 (343)
T 1ri6_A 105 ------AGNVSVTRLEDGL-PVGVVDVVEGL-DGCHSANISPDNRTLWVPALK----QDRICLFTVSDDGHL-------- 164 (343)
T ss_dssp ------TTEEEEEEEETTE-EEEEEEEECCC-TTBCCCEECTTSSEEEEEEGG----GTEEEEEEECTTSCE--------
T ss_pred ------CCeEEEEECCCCc-cccccccccCC-CCceEEEECCCCCEEEEecCC----CCEEEEEEecCCCce--------
Confidence 2357777774221 11122111111 123468899999998765422 23588888765 210
Q ss_pred CCCCCcE--Eeee--cccceEEEEEecCCeEEEEeCCCCCCceEEEEeCCC--CCCce---Ee--ccCC--CCCceeEEE
Q 004766 290 DGLLPFV--KLID--GFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKE--PNDWF---EV--IPEA--ERDVLESAT 356 (732)
Q Consensus 290 ~~~~~~~--~l~~--~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~--~~~~~---~l--~~~~--~~~~l~~~~ 356 (732)
.... .+.. +.......|+|+|+.+++.... ...+..++++. +. +. .+ ++.. .......+.
T Consensus 165 ---~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~---~~~i~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~i~ 237 (343)
T 1ri6_A 165 ---VAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNEL---NSSVDVWELKDPHGN-IECVQTLDMMPENFSDTRWAADIH 237 (343)
T ss_dssp ---EEEEEEEEECSTTCCEEEEEECTTSSEEEEEETT---TTEEEEEESSCTTSC-CEEEEEEECSCTTCCSCCCEEEEE
T ss_pred ---eeecccccccCCCCCcceEEECCCCCEEEEEeCC---CCEEEEEEecCCCCc-EEEEeeccccCccccccCCccceE
Confidence 0001 1111 1111223589999988876543 23677777743 33 21 11 1111 112345688
Q ss_pred EecCC-EEEEEEecCCeeEEEEEeCC--CCce--eeecccccceeeEeecccCCcEEEEEEecCCCCceEEEEECCCCC
Q 004766 357 AVNLN-QMIVSYLSDVKYVLQIRDLK--NGSL--LHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 430 (732)
Q Consensus 357 ~~~~~-~l~~~~~~~g~~~l~~~d~~--~g~~--~~~l~~~~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~~ 430 (732)
+++++ .+++....+ ..|.+|+++ +++. +..+... +.+..+.++++++.++++.. ....-.+|.+|..+++
T Consensus 238 ~s~dg~~l~v~~~~~--~~i~v~d~~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~-~~~~v~v~~~d~~~g~ 312 (343)
T 1ri6_A 238 ITPDGRHLYACDRTA--SLITVFSVSEDGSVLSKEGFQPTE-TQPRGFNVDHSGKYLIAAGQ-KSHHISVYEIVGEQGL 312 (343)
T ss_dssp ECTTSSEEEEEETTT--TEEEEEEECTTSCCEEEEEEEECS-SSCCCEEECTTSSEEEEECT-TTCEEEEEEEETTTTE
T ss_pred ECCCCCEEEEEecCC--CEEEEEEEcCCCCceEEeeeecCC-CccceEEECCCCCEEEEecC-CCCeEEEEEEcCCCce
Confidence 88765 565555444 468888876 3332 1222222 23667788999987765432 2233345555776763
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.18 E-value=4.8e-08 Score=102.83 Aligned_cols=260 Identities=10% Similarity=-0.007 Sum_probs=130.4
Q ss_pred eEEECCCCcEEEEEEecc-CCceEEEEEEECCCCceeccc--c-cceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCc
Q 004766 136 KVSVSEDAKYLAYALSYS-GSDWATIKLMRIEDQIVEADA--L-SWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTE 211 (732)
Q Consensus 136 ~~~~SPDG~~la~~~~~~-G~e~~~i~v~dl~~g~~~~~~--~-~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~ 211 (732)
.++|||||++|+++...+ +.....+|.++.++|+..... . .......+++ ||+.|+++..
T Consensus 54 ~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~-------------- 117 (361)
T 3scy_A 54 YLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANY-------------- 117 (361)
T ss_dssp SEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEET--------------
T ss_pred eEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEEC--------------
Confidence 678999999887775432 122234444455556532211 1 1112234555 8988877642
Q ss_pred ccCCcccEEEEEECCCCCCC-C--eEEEecCCC-------CeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCC
Q 004766 212 TDSNLYHEFYYHFLGTKQSE-D--ILCWKDPEH-------PKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPE 281 (732)
Q Consensus 212 ~~~~~~~~v~~~~lgt~~~~-~--~~v~~~~~~-------~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~ 281 (732)
....|.++++.+...- . ..+...... ......++|||||++|++..... ..++++++.....
T Consensus 118 ----~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~----~~v~v~~~~~~~~ 189 (361)
T 3scy_A 118 ----SGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGT----DQIHKFNINPNAN 189 (361)
T ss_dssp ----TTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTT----TEEEEEEECTTCC
T ss_pred ----CCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCC----CEEEEEEEcCCCC
Confidence 2235777777543211 1 111111100 11235689999999987765322 2455555543110
Q ss_pred ----C-cccccccCCCCCcEEeeecccceEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceE---eccC-CCCCce
Q 004766 282 ----G-LEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFE---VIPE-AERDVL 352 (732)
Q Consensus 282 ----~-~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~---l~~~-~~~~~l 352 (732)
. +... . ......+..+.......|+|||+.+|+....+ ..|.+++++++. ++. +... ......
T Consensus 190 ~~~~~~l~~~---~-~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~---~~v~v~~~~~g~-~~~~~~~~~~~~~~~~~ 261 (361)
T 3scy_A 190 ADNKEKFLTK---G-TPEAFKVAPGSGPRHLIFNSDGKFAYLINEIG---GTVIAFRYADGM-LDEIQTVAADTVNAQGS 261 (361)
T ss_dssp TTTCCCCEEE---E-EEEEEECCTTCCEEEEEECTTSSEEEEEETTT---CEEEEEEEETTE-EEEEEEEESCSSCCCCE
T ss_pred cccccceeec---c-cccceecCCCCCCeEEEEcCCCCEEEEEcCCC---CeEEEEEecCCc-eEEeEEEecCCCCCCCc
Confidence 0 0000 0 00000111122222346999999888765432 357777776553 221 1111 111234
Q ss_pred eEEEEecCCE-EEEEEecCCeeEEEEEeC--CCCce--eeecccccceeeEeecccCCcEEEEEEecCCCCceEEEEECC
Q 004766 353 ESATAVNLNQ-MIVSYLSDVKYVLQIRDL--KNGSL--LHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLK 427 (732)
Q Consensus 353 ~~~~~~~~~~-l~~~~~~~g~~~l~~~d~--~~g~~--~~~l~~~~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~ 427 (732)
..+.++++++ |++.... +...|.+|++ ++|+. +..+.. ...+..+.++||++.+++... ...--.+|.+|..
T Consensus 262 ~~i~~spdg~~l~v~~~~-~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~-~~~~v~v~~~d~~ 338 (361)
T 3scy_A 262 GDIHLSPDGKYLYASNRL-KADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACR-DTNVIQIFERDQA 338 (361)
T ss_dssp EEEEECTTSSEEEEEECS-SSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEET-TTTEEEEEEECTT
T ss_pred ccEEECCCCCEEEEECCC-CCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEEC-CCCCEEEEEEECC
Confidence 5788888655 5554443 1245666665 45653 122222 234556788999997765543 2333456668887
Q ss_pred CCC
Q 004766 428 TET 430 (732)
Q Consensus 428 ~~~ 430 (732)
+++
T Consensus 339 ~g~ 341 (361)
T 3scy_A 339 TGL 341 (361)
T ss_dssp TCC
T ss_pred CCc
Confidence 874
|
| >3qyj_A ALR0039 protein; alpha/beta fold, hydrolase; 1.78A {Nostoc SP} | Back alignment and structure |
|---|
Probab=99.17 E-value=2.2e-10 Score=117.24 Aligned_cols=117 Identities=12% Similarity=0.065 Sum_probs=77.6
Q ss_pred cCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCC
Q 004766 459 KDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKK 538 (732)
Q Consensus 459 ~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~ 538 (732)
.+| .++.+... |..|.||++||.++... .|.. ....|. .||.|+++|.||.|..... .......
T Consensus 12 ~~~-~~~~~~~~--------g~g~~~vllHG~~~~~~--~w~~-~~~~l~-~~~~vi~~Dl~G~G~s~~~---~~~~~~~ 75 (291)
T 3qyj_A 12 TTE-ARINLVKA--------GHGAPLLLLHGYPQTHV--MWHK-IAPLLA-NNFTVVATDLRGYGDSSRP---ASVPHHI 75 (291)
T ss_dssp CSS-CEEEEEEE--------CCSSEEEEECCTTCCGG--GGTT-THHHHT-TTSEEEEECCTTSTTSCCC---CCCGGGG
T ss_pred cCC-eEEEEEEc--------CCCCeEEEECCCCCCHH--HHHH-HHHHHh-CCCEEEEEcCCCCCCCCCC---CCCcccc
Confidence 367 78876532 34578999999887643 3443 345677 7999999999998754321 0000001
Q ss_pred ccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcC
Q 004766 539 QNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHV 593 (732)
Q Consensus 539 ~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~ 593 (732)
..+.+++.+.+..+++. ...+++.++|||+||+++..++.++|++++++|+..
T Consensus 76 ~~~~~~~~~~~~~~~~~--l~~~~~~l~GhS~Gg~ia~~~a~~~p~~v~~lvl~~ 128 (291)
T 3qyj_A 76 NYSKRVMAQDQVEVMSK--LGYEQFYVVGHDRGARVAHRLALDHPHRVKKLALLD 128 (291)
T ss_dssp GGSHHHHHHHHHHHHHH--TTCSSEEEEEETHHHHHHHHHHHHCTTTEEEEEEES
T ss_pred ccCHHHHHHHHHHHHHH--cCCCCEEEEEEChHHHHHHHHHHhCchhccEEEEEC
Confidence 12344444433333332 123579999999999999999999999999998764
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.17 E-value=6.6e-09 Score=111.56 Aligned_cols=236 Identities=19% Similarity=0.114 Sum_probs=145.4
Q ss_pred EEeEEECCCCc-EEEEEEeccCCceEEEEEEEC----CCCce------ec---ccc--------cceeeeeEEEEeCCcE
Q 004766 134 LIKVSVSEDAK-YLAYALSYSGSDWATIKLMRI----EDQIV------EA---DAL--------SWFKFSSIAWTHDSKG 191 (732)
Q Consensus 134 ~~~~~~SPDG~-~la~~~~~~G~e~~~i~v~dl----~~g~~------~~---~~~--------~~~~~~~~~WspDg~~ 191 (732)
+..++|||||+ +||.... ...|++||+ .+++. .. ... .......++|+|||+.
T Consensus 48 v~~~~~s~~~~~~l~~~~~-----dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 122 (425)
T 1r5m_A 48 IVSSTWNPLDESILAYGEK-----NSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNS 122 (425)
T ss_dssp CSEEEECSSCTTEEEEEET-----BTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSE
T ss_pred eEEEEECCCCCcEEEEecC-----CceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCE
Confidence 45889999999 8886642 247999999 88772 21 100 1113578999999999
Q ss_pred EEEEEecCCCCCCCCCCCCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEE
Q 004766 192 FFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKV 271 (732)
Q Consensus 192 l~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l 271 (732)
|+....+ ..|++|+... . .+.....+...+..+.|+|||++|+....++ .+
T Consensus 123 l~~~~~d-------------------g~i~i~~~~~---~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-----~i 173 (425)
T 1r5m_A 123 IVTGVEN-------------------GELRLWNKTG---A--LLNVLNFHRAPIVSVKWNKDGTHIISMDVEN-----VT 173 (425)
T ss_dssp EEEEETT-------------------SCEEEEETTS---C--EEEEECCCCSCEEEEEECTTSSEEEEEETTC-----CE
T ss_pred EEEEeCC-------------------CeEEEEeCCC---C--eeeeccCCCccEEEEEECCCCCEEEEEecCC-----eE
Confidence 9887533 2477777322 1 2222222344567899999999988765433 37
Q ss_pred EEEeCCCCCCCcccccccCCCCCcEEeeeccc----------------ceEEEEEecCCeEEEEeCCCCCCceEEEEeCC
Q 004766 272 YYCDLSALPEGLEGFKKRDGLLPFVKLIDGFD----------------AQYEVIANDDTVFTFLTNKDAPKYKIIRVDLK 335 (732)
Q Consensus 272 ~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~----------------~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~ 335 (732)
.++++.++.. ...+..... .....|++++ .++..+. ...|..+|+.
T Consensus 174 ~iwd~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~----~g~i~~~d~~ 235 (425)
T 1r5m_A 174 ILWNVISGTV-------------MQHFELKETGGSSINAENHSGDGSLGVDVEWVDDD-KFVIPGP----KGAIFVYQIT 235 (425)
T ss_dssp EEEETTTTEE-------------EEEECCC---------------CCCBSCCEEEETT-EEEEECG----GGCEEEEETT
T ss_pred EEEECCCCcE-------------EEEeeccccCccceeeccccCCcceeeEEEEcCCC-EEEEEcC----CCeEEEEEcC
Confidence 8888876421 111111000 1112467764 4444322 4579999998
Q ss_pred CCCCceEeccCCCCCceeEEEEecCCEEEEEEecCCeeEEEEEeCCCCceeeecccccceeeEeecccCCcEEEEEEecC
Q 004766 336 EPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSF 415 (732)
Q Consensus 336 ~~~~~~~l~~~~~~~~l~~~~~~~~~~l~~~~~~~g~~~l~~~d~~~g~~~~~l~~~~g~v~~~~~s~d~~~l~~~~ss~ 415 (732)
++.....+..+. ..+..+.+++++.+++....++ .|++||+.+++....+......+..+.+++++ . +++.+.
T Consensus 236 ~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~~d~--~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~-l~~~~~- 308 (425)
T 1r5m_A 236 EKTPTGKLIGHH--GPISVLEFNDTNKLLLSASDDG--TLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-K-VISCSM- 308 (425)
T ss_dssp CSSCSEEECCCS--SCEEEEEEETTTTEEEEEETTS--CEEEECSSSBSCSEEECCCSSCEEEEEEETTT-E-EEEEET-
T ss_pred CCceeeeeccCC--CceEEEEECCCCCEEEEEcCCC--EEEEEECCCCccceEecCCCccEEEEEECCCC-E-EEEEeC-
Confidence 876444444443 5688899998666677776664 68899998777656665456677788888888 3 333333
Q ss_pred CCCceEEEEECCCCC
Q 004766 416 LIPGIVYQCNLKTET 430 (732)
Q Consensus 416 ~~p~~~y~~d~~~~~ 430 (732)
-..++.||+.+++
T Consensus 309 --d~~i~i~d~~~~~ 321 (425)
T 1r5m_A 309 --DGSVRLWSLKQNT 321 (425)
T ss_dssp --TSEEEEEETTTTE
T ss_pred --CCcEEEEECCCCc
Confidence 3589999988763
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.17 E-value=1e-08 Score=110.13 Aligned_cols=239 Identities=12% Similarity=0.086 Sum_probs=150.3
Q ss_pred EEEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceec-ccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCC
Q 004766 132 AALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEA-DALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGT 210 (732)
Q Consensus 132 ~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~-~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~ 210 (732)
..+..+.|||||++|+.... + ..|++||. +++.+. ..........++|+||++.|+....+
T Consensus 109 ~~v~~~~~s~~~~~l~~~~~-d----g~i~i~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------------ 170 (425)
T 1r5m_A 109 NQVTCLAWSHDGNSIVTGVE-N----GELRLWNK-TGALLNVLNFHRAPIVSVKWNKDGTHIISMDVE------------ 170 (425)
T ss_dssp BCEEEEEECTTSSEEEEEET-T----SCEEEEET-TSCEEEEECCCCSCEEEEEECTTSSEEEEEETT------------
T ss_pred CceEEEEEcCCCCEEEEEeC-C----CeEEEEeC-CCCeeeeccCCCccEEEEEECCCCCEEEEEecC------------
Confidence 35789999999999987642 2 36899994 444332 22222235789999999988877533
Q ss_pred cccCCcccEEEEEECCCCCCCCeEEEecCCCC-------------eeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCC
Q 004766 211 ETDSNLYHEFYYHFLGTKQSEDILCWKDPEHP-------------KYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLS 277 (732)
Q Consensus 211 ~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~-------------~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~ 277 (732)
..|++|++.++.. +..+...... .....+.|+|++..+ .... ...|+++|+.
T Consensus 171 -------~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-----~g~i~~~d~~ 235 (425)
T 1r5m_A 171 -------NVTILWNVISGTV--MQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFV-IPGP-----KGAIFVYQIT 235 (425)
T ss_dssp -------CCEEEEETTTTEE--EEEECCC---------------CCCBSCCEEEETTEEE-EECG-----GGCEEEEETT
T ss_pred -------CeEEEEECCCCcE--EEEeeccccCccceeeccccCCcceeeEEEEcCCCEEE-EEcC-----CCeEEEEEcC
Confidence 2477888865431 1122111110 014567899997743 3322 2348888987
Q ss_pred CCCCCcccccccCCCCCcEEeeecccce-EEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEE
Q 004766 278 ALPEGLEGFKKRDGLLPFVKLIDGFDAQ-YEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESAT 356 (732)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~ 356 (732)
++. ....+....... ...|+|+++.|+..+. ...|..+|+.++.....+..+. ..+..+.
T Consensus 236 ~~~-------------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----d~~i~i~d~~~~~~~~~~~~~~--~~i~~~~ 296 (425)
T 1r5m_A 236 EKT-------------PTGKLIGHHGPISVLEFNDTNKLLLSASD----DGTLRIWHGGNGNSQNCFYGHS--QSIVSAS 296 (425)
T ss_dssp CSS-------------CSEEECCCSSCEEEEEEETTTTEEEEEET----TSCEEEECSSSBSCSEEECCCS--SCEEEEE
T ss_pred CCc-------------eeeeeccCCCceEEEEECCCCCEEEEEcC----CCEEEEEECCCCccceEecCCC--ccEEEEE
Confidence 642 122222211111 2358999887766543 2368888988766444444343 5688899
Q ss_pred EecCCEEEEEEecCCeeEEEEEeCCCCceeeecccccceeeEeecccCCcEEEEEEecCCCCceEEEEECCCC
Q 004766 357 AVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTE 429 (732)
Q Consensus 357 ~~~~~~l~~~~~~~g~~~l~~~d~~~g~~~~~l~~~~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~ 429 (732)
+++++ ++++...++ .|++||+.+++.+..+..+...+..+.++++++.++.... -..++.||+.++
T Consensus 297 ~~~~~-~l~~~~~d~--~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~----dg~i~i~~~~~~ 362 (425)
T 1r5m_A 297 WVGDD-KVISCSMDG--SVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFM----DGQVNVYDLKKL 362 (425)
T ss_dssp EETTT-EEEEEETTS--EEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEET----TSCEEEEECHHH
T ss_pred ECCCC-EEEEEeCCC--cEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEEC----CCeEEEEECCCC
Confidence 99866 666666664 7899999888776666655667778889999986654432 257888888654
|
| >2ogt_A Thermostable carboxylesterase EST50; alpha/beta hydrolase, hydrolase; 1.58A {Geobacillus stearothermophilus} PDB: 2ogs_A | Back alignment and structure |
|---|
Probab=99.17 E-value=6.3e-12 Score=137.93 Aligned_cols=221 Identities=18% Similarity=0.146 Sum_probs=130.4
Q ss_pred ccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCC---CccCCCCcChhHHHHHHhcC-cEEEEEcccCCC-CCchhHHhc
Q 004766 458 SKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGF---NISVTPSFSVSRTILMRHLG-AVFCIANIRGGG-EYGEEWHKG 532 (732)
Q Consensus 458 s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~---~~~~~~~~~~~~~~~l~~~G-~~v~~~~~rG~g-~~g~~~~~~ 532 (732)
+.|+ . .+.++.|+. ..++.|+||++|||. ++.....+.. ..+.. +| ++|+.+|||.+. +|+..-...
T Consensus 81 ~edc-l--~l~v~~P~~--~~~~~Pviv~iHGGg~~~g~~~~~~~~~--~~la~-~~~~vvv~~nYRlg~~Gf~~~~~~~ 152 (498)
T 2ogt_A 81 SEDG-L--YLNIWSPAA--DGKKRPVLFWIHGGAFLFGSGSSPWYDG--TAFAK-HGDVVVVTINYRMNVFGFLHLGDSF 152 (498)
T ss_dssp BSCC-C--EEEEEESCS--SSCCEEEEEEECCSTTTSCCTTCGGGCC--HHHHH-HHTCEEEEECCCCHHHHCCCCTTTT
T ss_pred CCCC-c--EEEEEecCC--CCCCCcEEEEEcCCccCCCCCCCCcCCH--HHHHh-CCCEEEEeCCCcCchhhccCchhhc
Confidence 4555 4 455667863 346789999999996 3333333332 34444 55 999999999321 222111000
Q ss_pred --ccccCCccHHHHHHHHHHHHHHcC---CCCCCcEEEEecChhHHHHHHHHhh--CCCeeeEEEEcCCcccc-cccccC
Q 004766 533 --GALAKKQNCFDDFISASEYLISAG---YTQSRKLCIEGGSNGGLLVGACINQ--RPDLFGCALAHVGVMDM-LRYHKF 604 (732)
Q Consensus 533 --~~~~~~~~~~~D~~~~~~~l~~~~---~~d~~~i~i~G~S~GG~l~~~~~~~--~p~~f~a~v~~~p~~d~-~~~~~~ 604 (732)
.....+...+.|++++++|+.++. -.||+||.|+|+|+||.+++.++.. .+.+|+++|+.+|..+. ......
T Consensus 153 ~~~~~~~~n~gl~D~~~al~wv~~~i~~fggdp~~V~l~G~SaGg~~~~~~~~~~~~~~lf~~~i~~sg~~~~~~~~~~~ 232 (498)
T 2ogt_A 153 GEAYAQAGNLGILDQVAALRWVKENIAAFGGDPDNITIFGESAGAASVGVLLSLPEASGLFRRAMLQSGSGSLLLRSPET 232 (498)
T ss_dssp CGGGTTGGGHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGTTSCSEEEEESCCTTTTCBCHHH
T ss_pred cccccCCCCcccHHHHHHHHHHHHHHHHhCCCCCeEEEEEECHHHHHHHHHHhcccccchhheeeeccCCccccccCHHH
Confidence 011122346899999999998762 2699999999999999999888875 25689999999997652 111000
Q ss_pred --CCCCccccccCCCCCHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhcCC
Q 004766 605 --TIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTS 682 (732)
Q Consensus 605 --~~~~~~~~~~g~p~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~ 682 (732)
..........|++. +..+.|++.++...+.... ... +.+.....-|..+-+.++.++.++-+..
T Consensus 233 ~~~~~~~~~~~~gc~~--~~~~~Lr~~~~~~l~~~~~-------~~~-~~~~f~PvvDg~~lp~~p~~~~~~g~~~---- 298 (498)
T 2ogt_A 233 AMAMTERILDKAGIRP--GDRERLLSIPAEELLRAAL-------SLG-PGVMYGPVVDGRVLRRHPIEALRYGAAS---- 298 (498)
T ss_dssp HHHHHHHHHHHHTCCT--TCHHHHHHSCHHHHHHHHH-------TTT-TSCCCCCBCCSSSCCSCHHHHHHTTTTT----
T ss_pred HHHHHHHHHHHhCCCH--HHHHHHHcCCHHHHHHHHh-------hcc-CCCceeeeeCCcccccCHHHHHhcCCCC----
Confidence 00001123346652 2345566655543222100 000 1112223346667777776655443322
Q ss_pred CCCCCCCCCEEEEEeCCCCCCCCC
Q 004766 683 LENSPQTNPIIGRIERKAGHGVGL 706 (732)
Q Consensus 683 ~~~~~~~~~~~~~~~~~~gH~~~~ 706 (732)
++|+.+-...++|+.+..
T Consensus 299 ------~vp~liG~~~~Eg~~f~~ 316 (498)
T 2ogt_A 299 ------GIPILIGVTKDEYNLFTL 316 (498)
T ss_dssp ------TCCEEEEEETTHHHHTTT
T ss_pred ------CCCEEEEEeccchhhhhc
Confidence 789999999999987654
|
| >3fle_A SE_1780 protein; structural genomics, APC61035.1, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.01A {Staphylococcus epidermidis} | Back alignment and structure |
|---|
Probab=99.16 E-value=3.3e-10 Score=112.04 Aligned_cols=212 Identities=14% Similarity=0.008 Sum_probs=126.3
Q ss_pred ccEEEEEcCCCCccCCCCcChhHHHHHHhcCc--EEEEEcccCCCCC---chh--HHh-----cccccCCc----cHHHH
Q 004766 481 HPCLLYGYGGFNISVTPSFSVSRTILMRHLGA--VFCIANIRGGGEY---GEE--WHK-----GGALAKKQ----NCFDD 544 (732)
Q Consensus 481 ~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~--~v~~~~~rG~g~~---g~~--~~~-----~~~~~~~~----~~~~D 544 (732)
.+.||++||..+... .|.. +...|.++|+ .|+.+|+++.|.. |.- ... -+...+.. ...++
T Consensus 6 ~~pvvliHG~~~~~~--~~~~-l~~~L~~~g~~~~vi~~dv~~~G~~~~~G~~~~~~~~P~i~v~f~~n~~~~~~~~~~~ 82 (249)
T 3fle_A 6 TTATLFLHGYGGSER--SETF-MVKQALNKNVTNEVITARVSSEGKVYFDKKLSEDAANPIVKVEFKDNKNGNFKENAYW 82 (249)
T ss_dssp CEEEEEECCTTCCGG--GTHH-HHHHHHTTTSCSCEEEEEECSSCCEEESSCCC--CCSCEEEEEESSTTCCCHHHHHHH
T ss_pred CCcEEEECCCCCChh--HHHH-HHHHHHHcCCCceEEEEEECCCCCEEEccccccccCCCeEEEEcCCCCCccHHHHHHH
Confidence 456888999877543 3443 4566776886 5888888876531 110 000 00011111 13567
Q ss_pred HHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCC-----eeeEEEEcCCcccccccccCCCCCccccccCCCCC
Q 004766 545 FISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPD-----LFGCALAHVGVMDMLRYHKFTIGHAWVSDFGCSEE 619 (732)
Q Consensus 545 ~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~-----~f~a~v~~~p~~d~~~~~~~~~~~~~~~~~g~p~~ 619 (732)
+.+++++|.++- ..+++.++||||||++++.++.++|+ ..+.+|+..+..+-................|.|..
T Consensus 83 l~~~i~~l~~~~--~~~~~~lvGHSmGG~ia~~~~~~~~~~~~~~~v~~lv~i~~p~~g~~~~~~~~~~~~~~~~g~p~~ 160 (249)
T 3fle_A 83 IKEVLSQLKSQF--GIQQFNFVGHSMGNMSFAFYMKNYGDDRHLPQLKKEVNIAGVYNGILNMNENVNEIIVDKQGKPSR 160 (249)
T ss_dssp HHHHHHHHHHTT--CCCEEEEEEETHHHHHHHHHHHHHSSCSSSCEEEEEEEESCCTTCCTTTSSCTTTSCBCTTCCBSS
T ss_pred HHHHHHHHHHHh--CCCceEEEEECccHHHHHHHHHHCcccccccccceEEEeCCccCCcccccCCcchhhhcccCCCcc
Confidence 778888887662 34589999999999999999998874 67888776654443322211111111123355522
Q ss_pred -HHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEeeC------CCCCCCchHHHHHHHHHHHhhcCCCCCCCCCCCE
Q 004766 620 -EEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTAD------HDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPI 692 (732)
Q Consensus 620 -~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~------~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 692 (732)
...++.|.+..+ .+.. ...|+|.++|. .|..||...++.+...++.. ....
T Consensus 161 ~~~~~~~l~~~~~--~~p~----------~~~~vl~I~G~~~~~~~sDG~V~~~Sa~~~~~l~~~~----------~~~y 218 (249)
T 3fle_A 161 MNAAYRQLLSLYK--IYCG----------KEIEVLNIYGDLEDGSHSDGRVSNSSSQSLQYLLRGS----------TKSY 218 (249)
T ss_dssp CCHHHHHTGGGHH--HHTT----------TTCEEEEEEEECCSSSCBSSSSBHHHHHTHHHHSTTC----------SSEE
T ss_pred cCHHHHHHHHHHh--hCCc----------cCCeEEEEeccCCCCCCCCCcccHHHHHHHHHHHhhC----------CCce
Confidence 234444433211 1111 35699999998 79999998887776666643 4555
Q ss_pred EEEEeCC--CCCCCCCchHHHHHHHHHHHHHH
Q 004766 693 IGRIERK--AGHGVGLPTQKMIDEAADRYGFM 722 (732)
Q Consensus 693 ~~~~~~~--~gH~~~~~~~~~~~~~~~~~~fl 722 (732)
..+++++ +.|...... .+....+..||
T Consensus 219 ~e~~v~g~~a~Hs~l~~n---~~V~~~I~~FL 247 (249)
T 3fle_A 219 QEMKFKGAKAQHSQLHEN---KDVANEIIQFL 247 (249)
T ss_dssp EEEEEESGGGSTGGGGGC---HHHHHHHHHHH
T ss_pred EEEEEeCCCCchhccccC---HHHHHHHHHHh
Confidence 5566655 889865432 24556677777
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=99.16 E-value=4.3e-09 Score=123.90 Aligned_cols=226 Identities=11% Similarity=0.013 Sum_probs=149.5
Q ss_pred EEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecccc-cceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCc
Q 004766 133 ALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADAL-SWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTE 211 (732)
Q Consensus 133 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~-~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~ 211 (732)
.+..+.|||||++||.... ...|+|||+.+|+.+.... .......++|+|||+.|+....+
T Consensus 57 ~v~~~~~s~~~~~l~~~~~-----dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d------------- 118 (814)
T 3mkq_A 57 PVRAGKFIARKNWIIVGSD-----DFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDD------------- 118 (814)
T ss_dssp CEEEEEEEGGGTEEEEEET-----TSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETT-------------
T ss_pred cEEEEEEeCCCCEEEEEeC-----CCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCC-------------
Confidence 4778999999999998753 2489999999998543221 22235789999999998876532
Q ss_pred ccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEec-CCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccC
Q 004766 212 TDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTE-DGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRD 290 (732)
Q Consensus 212 ~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~ 290 (732)
..|.+|++.++... ...+.. +...+..+.|+| ||+.|+....+ ..|.++|+.++.
T Consensus 119 ------g~i~vw~~~~~~~~-~~~~~~--~~~~v~~~~~~p~~~~~l~~~~~d-----g~v~vwd~~~~~---------- 174 (814)
T 3mkq_A 119 ------LTVKLWNWENNWAL-EQTFEG--HEHFVMCVAFNPKDPSTFASGCLD-----RTVKVWSLGQST---------- 174 (814)
T ss_dssp ------SEEEEEEGGGTSEE-EEEEEC--CSSCEEEEEEETTEEEEEEEEETT-----SEEEEEETTCSS----------
T ss_pred ------CEEEEEECCCCceE-EEEEcC--CCCcEEEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCc----------
Confidence 36888888764221 122322 234567899999 78887765533 348888987632
Q ss_pred CCCCcEEeeec--ccceEEEEEe--cCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecCCEEEEE
Q 004766 291 GLLPFVKLIDG--FDAQYEVIAN--DDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVS 366 (732)
Q Consensus 291 ~~~~~~~l~~~--~~~~~~~~s~--dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~~l~~~ 366 (732)
+...+... .......|+| ++..++..+. ...|..+|+.++.....+..+. ..+..+.+++++.++++
T Consensus 175 ---~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~----dg~i~~~d~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~ 245 (814)
T 3mkq_A 175 ---PNFTLTTGQERGVNYVDYYPLPDKPYMITASD----DLTIKIWDYQTKSCVATLEGHM--SNVSFAVFHPTLPIIIS 245 (814)
T ss_dssp ---CSEEEECCCTTCCCEEEECCSTTCCEEEEECT----TSEEEEEETTTTEEEEEEECCS--SCEEEEEECSSSSEEEE
T ss_pred ---ceeEEecCCCCCEEEEEEEECCCCCEEEEEeC----CCEEEEEECCCCcEEEEEcCCC--CCEEEEEEcCCCCEEEE
Confidence 12222222 2223345788 7776665433 3478889988776344443343 56888999987667777
Q ss_pred EecCCeeEEEEEeCCCCceeeecccccceeeEeecccCCcEEEEE
Q 004766 367 YLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFIS 411 (732)
Q Consensus 367 ~~~~g~~~l~~~d~~~g~~~~~l~~~~g~v~~~~~s~d~~~l~~~ 411 (732)
...++ .|++||+.+++....+..+...+..+++++++..+++.
T Consensus 246 ~~~dg--~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 288 (814)
T 3mkq_A 246 GSEDG--TLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIA 288 (814)
T ss_dssp EETTS--CEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEE
T ss_pred EeCCC--eEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEE
Confidence 77774 68899998887766676666667778888888754333
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=99.15 E-value=7.8e-09 Score=108.25 Aligned_cols=240 Identities=9% Similarity=0.014 Sum_probs=141.0
Q ss_pred CEEEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecccc-cceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCC
Q 004766 131 TAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADAL-SWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAG 209 (732)
Q Consensus 131 ~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~-~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~ 209 (732)
...+..+.|||||++|+-.. ...+|++||+.+++.+.... .......++|+|||+.|+....+
T Consensus 76 ~~~V~~~~~~~~~~~l~s~s-----~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d----------- 139 (343)
T 2xzm_R 76 NHFVSDLALSQENCFAISSS-----WDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAE----------- 139 (343)
T ss_dssp SSCEEEEEECSSTTEEEEEE-----TTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETT-----------
T ss_pred CCceEEEEECCCCCEEEEEc-----CCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCC-----------
Confidence 34577899999999887442 22489999999988543221 22235789999999988876533
Q ss_pred CcccCCcccEEEEEECCCCCCCCeEEEe-cCCCCeeEEEeEEecCC----------cEEEEEEecCCcceEEEEEEeCCC
Q 004766 210 TETDSNLYHEFYYHFLGTKQSEDILCWK-DPEHPKYIFSGHVTEDG----------QYLVMCIEENCDPVNKVYYCDLSA 278 (732)
Q Consensus 210 ~~~~~~~~~~v~~~~lgt~~~~~~~v~~-~~~~~~~~~~~~~SpDg----------~~l~~~~~~~~~~~~~l~~~d~~~ 278 (732)
..|.+|++.... ..... ...+...+..+.|+|++ .+++..+.+ ..|.++|...
T Consensus 140 --------~~i~~wd~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d-----~~i~iwd~~~ 203 (343)
T 2xzm_R 140 --------REIKLWNILGEC---KFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWD-----GRLKVWNTNF 203 (343)
T ss_dssp --------SCEEEEESSSCE---EEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETT-----SEEEEEETTT
T ss_pred --------CEEEEEeccCCc---eeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCC-----CEEEEEcCCC
Confidence 358888875321 11111 11233456688999987 565544432 3477778432
Q ss_pred CCCCcccccccCCCCCcEEeeecccce-EEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEE
Q 004766 279 LPEGLEGFKKRDGLLPFVKLIDGFDAQ-YEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATA 357 (732)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~ 357 (732)
. ....+....... ...|+|+|+.|+..+. ...|..+|+............. ..+..+.+
T Consensus 204 ~--------------~~~~~~~h~~~v~~~~~s~~g~~l~sgs~----dg~v~iwd~~~~~~~~~~~~~~--~~v~~v~~ 263 (343)
T 2xzm_R 204 Q--------------IRYTFKAHESNVNHLSISPNGKYIATGGK----DKKLLIWDILNLTYPQREFDAG--STINQIAF 263 (343)
T ss_dssp E--------------EEEEEECCSSCEEEEEECTTSSEEEEEET----TCEEEEEESSCCSSCSEEEECS--SCEEEEEE
T ss_pred c--------------eeEEEcCccccceEEEECCCCCEEEEEcC----CCeEEEEECCCCcccceeecCC--CcEEEEEE
Confidence 1 011222211111 2258999988775443 3468888884433122222222 45888999
Q ss_pred ecCCEEEEEEecCCeeEEEEEeCCCCceee--ecc-----------cccceeeEeecccCCcEEEEEEecCCCCceEEEE
Q 004766 358 VNLNQMIVSYLSDVKYVLQIRDLKNGSLLH--QLP-----------IEIGSVNAISARREDSVVFISFTSFLIPGIVYQC 424 (732)
Q Consensus 358 ~~~~~l~~~~~~~g~~~l~~~d~~~g~~~~--~l~-----------~~~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~ 424 (732)
++++.+++...++ .|.+|++.+++... .+. .....+..++++|+++.|+.... -..+..|
T Consensus 264 sp~~~~la~~~d~---~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~----Dg~v~~w 336 (343)
T 2xzm_R 264 NPKLQWVAVGTDQ---GVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFT----DGVIRTF 336 (343)
T ss_dssp CSSSCEEEEEESS---CEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEET----TSEEEEE
T ss_pred CCCCCEEEEECCC---CEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecC----CceEEEE
Confidence 9866666555433 48899987665422 222 11234677889999986654322 2466667
Q ss_pred ECCCC
Q 004766 425 NLKTE 429 (732)
Q Consensus 425 d~~~~ 429 (732)
++.++
T Consensus 337 ~~~~g 341 (343)
T 2xzm_R 337 SFETS 341 (343)
T ss_dssp EEEEE
T ss_pred EEEcc
Confidence 65443
|
| >2h7c_A Liver carboxylesterase 1; enzyme, cholesteryl esterase, hydrolase; HET: NAG NDG SIA COA; 2.00A {Homo sapiens} SCOP: c.69.1.1 PDB: 2dqy_A* 2dr0_A* 2dqz_A* 1mx1_A* 1mx5_A* 1mx9_A* 4ab1_A* 1ya4_A* 1yah_A* 1yaj_A* 1ya8_A* 2hrr_A* 2hrq_A* 3k9b_A* 1k4y_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=4.6e-11 Score=132.53 Aligned_cols=133 Identities=18% Similarity=0.165 Sum_probs=94.5
Q ss_pred ccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCC-CcChhHHHHHHhcCcEEEEEccc-CCCCCchhHHhcccc
Q 004766 458 SKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTP-SFSVSRTILMRHLGAVFCIANIR-GGGEYGEEWHKGGAL 535 (732)
Q Consensus 458 s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~-~~~~~~~~~l~~~G~~v~~~~~r-G~g~~g~~~~~~~~~ 535 (732)
+.|. +.+.++.|+....+++.|+||++|||....... .|... .++.++|++|+.+||| |..+|+..... .
T Consensus 95 ~edc---l~lnv~~P~~~~~~~~~Pv~v~iHGG~~~~g~~~~~~~~--~la~~~g~vvv~~nYRlg~~gf~~~~~~---~ 166 (542)
T 2h7c_A 95 SEDC---LYLNIYTPADLTKKNRLPVMVWIHGGGLMVGAASTYDGL--ALAAHENVVVVTIQYRLGIWGFFSTGDE---H 166 (542)
T ss_dssp ESCC---CEEEEEECSCTTSCCCEEEEEEECCSTTTSCCSTTSCCH--HHHHHHTCEEEEECCCCHHHHHCCCSST---T
T ss_pred CCCC---cEEEEEECCCCCCCCCCCEEEEECCCcccCCCccccCHH--HHHhcCCEEEEecCCCCccccCCCCCcc---c
Confidence 4455 445677887654457899999999985432222 24432 3455589999999999 43233221111 1
Q ss_pred cCCccHHHHHHHHHHHHHHc---CCCCCCcEEEEecChhHHHHHHHHhh--CCCeeeEEEEcCCcccc
Q 004766 536 AKKQNCFDDFISASEYLISA---GYTQSRKLCIEGGSNGGLLVGACINQ--RPDLFGCALAHVGVMDM 598 (732)
Q Consensus 536 ~~~~~~~~D~~~~~~~l~~~---~~~d~~~i~i~G~S~GG~l~~~~~~~--~p~~f~a~v~~~p~~d~ 598 (732)
..+...+.|++++++|+.++ -..||+||.|+|+|+||.+++.++.. .+.+|+++|+.+|....
T Consensus 167 ~~~n~gl~D~~~al~wv~~ni~~fggDp~~Vtl~G~SaGg~~~~~~~~~~~~~~lf~~ai~~Sg~~~~ 234 (542)
T 2h7c_A 167 SRGNWGHLDQVAALRWVQDNIASFGGNPGSVTIFGESAGGESVSVLVLSPLAKNLFHRAISESGVALT 234 (542)
T ss_dssp CCCCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGTTSCSEEEEESCCTTC
T ss_pred CccchhHHHHHHHHHHHHHHHHHcCCCccceEEEEechHHHHHHHHHhhhhhhHHHHHHhhhcCCccC
Confidence 22334689999999999876 24699999999999999999998876 36799999999997654
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.15 E-value=1.3e-08 Score=106.99 Aligned_cols=224 Identities=9% Similarity=-0.024 Sum_probs=139.5
Q ss_pred EEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCce--e-----cccccceeeeeEEEEeCCcEEEEEEecCCCCCCCC
Q 004766 134 LIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIV--E-----ADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDM 206 (732)
Q Consensus 134 ~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~--~-----~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~ 206 (732)
+..+.|||||++||... ....+++|++..+.. . ...........++|+||++.|+..+.+
T Consensus 109 v~~~~~sp~g~~lasg~-----~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D-------- 175 (354)
T 2pbi_B 109 VMACAYAPSGCAIACGG-----LDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGD-------- 175 (354)
T ss_dssp CCEEEECTTSSEEEEES-----TTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETT--------
T ss_pred EEEEEECCCCCEEEEee-----CCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCC--------
Confidence 45789999999988552 224788898865421 0 001111124678999999988876533
Q ss_pred CCCCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEec--CCcEEEEEEecCCcceEEEEEEeCCCCCCCcc
Q 004766 207 DAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTE--DGQYLVMCIEENCDPVNKVYYCDLSALPEGLE 284 (732)
Q Consensus 207 ~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~Sp--Dg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~ 284 (732)
..|.+|++.++.. +..+... ...+..+.++| +|++|+..+.++ .+.++|+.++.
T Consensus 176 -----------~~v~lwd~~~~~~--~~~~~~h--~~~v~~~~~~~~~~g~~l~sgs~Dg-----~v~~wd~~~~~---- 231 (354)
T 2pbi_B 176 -----------GTCALWDVESGQL--LQSFHGH--GADVLCLDLAPSETGNTFVSGGCDK-----KAMVWDMRSGQ---- 231 (354)
T ss_dssp -----------SEEEEEETTTCCE--EEEEECC--SSCEEEEEECCCSSCCEEEEEETTS-----CEEEEETTTCC----
T ss_pred -----------CcEEEEeCCCCeE--EEEEcCC--CCCeEEEEEEeCCCCCEEEEEeCCC-----eEEEEECCCCc----
Confidence 3689999987642 2233332 22344566665 678877665433 38888987742
Q ss_pred cccccCCCCCcEEeeecccce-EEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecCCEE
Q 004766 285 GFKKRDGLLPFVKLIDGFDAQ-YEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQM 363 (732)
Q Consensus 285 ~~~~~~~~~~~~~l~~~~~~~-~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~~l 363 (732)
+...+....... ...|+|+|+.|+..+.. ..|..+|+.+......+..+.....+..+.+++++.+
T Consensus 232 ---------~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D----~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~ 298 (354)
T 2pbi_B 232 ---------CVQAFETHESDVNSVRYYPSGDAFASGSDD----ATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRL 298 (354)
T ss_dssp ---------EEEEECCCSSCEEEEEECTTSSEEEEEETT----SCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSE
T ss_pred ---------EEEEecCCCCCeEEEEEeCCCCEEEEEeCC----CeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCE
Confidence 122222211111 22488998877655432 3577888877642222222221234667888887777
Q ss_pred EEEEecCCeeEEEEEeCCCCceeeecccccceeeEeecccCCcEEE
Q 004766 364 IVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVF 409 (732)
Q Consensus 364 ~~~~~~~g~~~l~~~d~~~g~~~~~l~~~~g~v~~~~~s~d~~~l~ 409 (732)
++....++ .|++||+.+|+.+..+..+.+.|..+.++|++..++
T Consensus 299 l~~g~~d~--~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~ 342 (354)
T 2pbi_B 299 LFAGYNDY--TINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFC 342 (354)
T ss_dssp EEEEETTS--CEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEE
T ss_pred EEEEECCC--cEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEE
Confidence 77777774 788999987877666665677788899999998554
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=99.15 E-value=4.2e-08 Score=105.80 Aligned_cols=248 Identities=12% Similarity=-0.011 Sum_probs=150.4
Q ss_pred EEEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCc
Q 004766 132 AALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTE 211 (732)
Q Consensus 132 ~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~ 211 (732)
..+..++|||||++||.... ..+|+|||+++++.+....... ..-.++++|++.|+....
T Consensus 148 ~~V~sv~fspdg~~lasgs~-----Dg~v~iWd~~~~~~~~~~~~h~-~~v~~~s~~~~~l~sgs~-------------- 207 (420)
T 4gga_A 148 EYISSVAWIKEGNYLAVGTS-----SAEVQLWDVQQQKRLRNMTSHS-ARVGSLSWNSYILSSGSR-------------- 207 (420)
T ss_dssp CCEEEEEECTTSSEEEEEET-----TSCEEEEETTTTEEEEEECCCS-SCEEEEEEETTEEEEEET--------------
T ss_pred CcEEEEEECCCCCEEEEEEC-----CCeEEEEEcCCCcEEEEEeCCC-CceEEEeeCCCEEEEEeC--------------
Confidence 34789999999999986542 2479999999998654322111 122344557777765542
Q ss_pred ccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCC
Q 004766 212 TDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDG 291 (732)
Q Consensus 212 ~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 291 (732)
...++.++..+.... +..+.. +........++|+|++++....++. +.+++..++...
T Consensus 208 -----d~~i~~~d~~~~~~~-~~~~~~--h~~~~~~~~~~~~g~~l~s~~~D~~-----v~i~~~~~~~~~--------- 265 (420)
T 4gga_A 208 -----SGHIHHHDVRVAEHH-VATLSG--HSQEVCGLRWAPDGRHLASGGNDNL-----VNVWPSAPGEGG--------- 265 (420)
T ss_dssp -----TSEEEEEETTSSSCE-EEEEEC--CSSCEEEEEECTTSSEEEEEETTSC-----EEEEESSCCSSC---------
T ss_pred -----CCceeEeeeccccee-eEEecc--cccceeeeeecCCCCeeeeeecccc-----ceEEeecccccc---------
Confidence 336788887654322 222322 2334568899999999987665433 677787764311
Q ss_pred CCCcEEeeecccc-eEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecCCEEEEEEecC
Q 004766 292 LLPFVKLIDGFDA-QYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSD 370 (732)
Q Consensus 292 ~~~~~~l~~~~~~-~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~~l~~~~~~~ 370 (732)
............. ....|+|++..++....- ..+..|..+|+.++.....+..+ ..+..+.+.+++..++.....
T Consensus 266 ~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~g-s~D~~I~iwd~~t~~~~~~~~~~---~~v~~~~~~~~~~~lv~~sg~ 341 (420)
T 4gga_A 266 WVPLQTFTQHQGAVKAVAWCPWQSNVLATGGG-TSDRHIRIWNVCSGACLSAVDAH---SQVCSILWSPHYKELISGHGF 341 (420)
T ss_dssp SCCSEEECCCSSCEEEEEECTTCTTEEEEEEC-TTTCEEEEEETTTTEEEEEEECS---SCEEEEEEETTTTEEEEEECT
T ss_pred ceeeeeecccCCceeeeeeCCCcccEEEEEee-cCCCEEEEEeCCccccceeeccc---cceeeeeecCCCCeEEEEEec
Confidence 1112222221111 123588877766654332 22457888999887633333322 345667777654433333322
Q ss_pred CeeEEEEEeCCCCceeeecccccceeeEeecccCCcEEEEEEecCCCCceEEEEECCCC
Q 004766 371 VKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTE 429 (732)
Q Consensus 371 g~~~l~~~d~~~g~~~~~l~~~~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~ 429 (732)
....|++||..+++.+..+..+.+.|..+.++||+..|+ +.+.. .++..||+...
T Consensus 342 ~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~-S~s~D---~tvriWdv~~~ 396 (420)
T 4gga_A 342 AQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVA-SAAAD---ETLRLWRCFEL 396 (420)
T ss_dssp TTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEE-EEETT---TEEEEECCSCS
T ss_pred CCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEE-EEecC---CeEEEEECCCC
Confidence 225799999998888778876777888999999998654 44432 46778887543
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=99.14 E-value=5.9e-08 Score=100.41 Aligned_cols=239 Identities=10% Similarity=0.029 Sum_probs=145.4
Q ss_pred CCEEEEeEEECCCC-cEEEEEEeccCCceEEEEEEECCCCc-----eecc-cccceeeeeEEEEeCCcEEEEEEecCCCC
Q 004766 130 GTAALIKVSVSEDA-KYLAYALSYSGSDWATIKLMRIEDQI-----VEAD-ALSWFKFSSIAWTHDSKGFFYSRYPAPKE 202 (732)
Q Consensus 130 ~~~~~~~~~~SPDG-~~la~~~~~~G~e~~~i~v~dl~~g~-----~~~~-~~~~~~~~~~~WspDg~~l~y~~~~~~~~ 202 (732)
+...+..++|||++ ++|+ +.+.+ .+|++||+.+.. .+.. .........++|+|||+.|+....+
T Consensus 16 H~~~V~~l~~~~~~~~~l~-s~s~D----~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D---- 86 (319)
T 3frx_A 16 HNGWVTSLATSAGQPNLLL-SASRD----KTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWD---- 86 (319)
T ss_dssp CSSCEEEEEECSSCTTEEE-EEETT----SEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETT----
T ss_pred ccceEEEEEccCCCccEEE-EecCC----ccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCC----
Confidence 34456788999977 5554 43322 489999986532 1111 1111124678999999988876543
Q ss_pred CCCCCCCCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCC
Q 004766 203 GKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEG 282 (732)
Q Consensus 203 ~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~ 282 (732)
..|.+|++.++.. ...+.. +...+..+.|+|++++|+..+.++. +.++|+.+..
T Consensus 87 ---------------~~v~~wd~~~~~~--~~~~~~--h~~~v~~~~~~~~~~~l~s~s~D~~-----i~vwd~~~~~-- 140 (319)
T 3frx_A 87 ---------------KTLRLWDVATGET--YQRFVG--HKSDVMSVDIDKKASMIISGSRDKT-----IKVWTIKGQC-- 140 (319)
T ss_dssp ---------------SEEEEEETTTTEE--EEEEEC--CSSCEEEEEECTTSCEEEEEETTSC-----EEEEETTSCE--
T ss_pred ---------------CEEEEEECCCCCe--eEEEcc--CCCcEEEEEEcCCCCEEEEEeCCCe-----EEEEECCCCe--
Confidence 3689999987632 122322 2345678999999999876654433 6677876521
Q ss_pred cccccccCCCCCcEEeeecccceE-EEEEec------CCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEE
Q 004766 283 LEGFKKRDGLLPFVKLIDGFDAQY-EVIAND------DTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESA 355 (732)
Q Consensus 283 ~~~~~~~~~~~~~~~l~~~~~~~~-~~~s~d------g~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~ 355 (732)
...+........ ..+.|. +..++..+. ...|..+|+.+......+..+. ..+..+
T Consensus 141 ------------~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~----d~~i~~wd~~~~~~~~~~~~h~--~~v~~~ 202 (319)
T 3frx_A 141 ------------LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGN----DKMVKAWNLNQFQIEADFIGHN--SNINTL 202 (319)
T ss_dssp ------------EEEECCCSSCEEEEEECCC------CCEEEEEET----TSCEEEEETTTTEEEEEECCCC--SCEEEE
T ss_pred ------------EEEEeccCCcEEEEEEccCCCCCCCccEEEEEeC----CCEEEEEECCcchhheeecCCC--CcEEEE
Confidence 222222111111 124443 333443322 3458888987765333444444 568889
Q ss_pred EEecCCEEEEEEecCCeeEEEEEeCCCCceeeecccccceeeEeecccCCcEEEEEEecCCCCceEEEEECCCC
Q 004766 356 TAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTE 429 (732)
Q Consensus 356 ~~~~~~~l~~~~~~~g~~~l~~~d~~~g~~~~~l~~~~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~ 429 (732)
.+++++.++++...++ .|++||+.+++.+..+.. ...+..+.++|++..++.... ..+..+++..+
T Consensus 203 ~~sp~g~~l~s~~~dg--~i~iwd~~~~~~~~~~~~-~~~v~~~~~sp~~~~la~~~~-----~~i~v~~~~~~ 268 (319)
T 3frx_A 203 TASPDGTLIASAGKDG--EIMLWNLAAKKAMYTLSA-QDEVFSLAFSPNRYWLAAATA-----TGIKVFSLDPQ 268 (319)
T ss_dssp EECTTSSEEEEEETTC--EEEEEETTTTEEEEEEEC-CSCEEEEEECSSSSEEEEEET-----TEEEEEEETTE
T ss_pred EEcCCCCEEEEEeCCC--eEEEEECCCCcEEEEecC-CCcEEEEEEcCCCCEEEEEcC-----CCcEEEEeCcC
Confidence 9998777888888774 799999987776555553 345778889999886654332 24666666554
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=99.14 E-value=7.7e-09 Score=111.26 Aligned_cols=242 Identities=11% Similarity=0.080 Sum_probs=142.7
Q ss_pred CEEEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceeccc-ccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCC
Q 004766 131 TAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADA-LSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAG 209 (732)
Q Consensus 131 ~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~-~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~ 209 (732)
...+..+.|||||++|+.... ..+|++||+.+++.+... ........++|+||++.|+....+.
T Consensus 139 ~~~v~~~~~~~~~~~l~s~s~-----d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~---------- 203 (420)
T 3vl1_A 139 VSEITKLKFFPSGEALISSSQ-----DMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDG---------- 203 (420)
T ss_dssp SSCEEEEEECTTSSEEEEEET-----TSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTS----------
T ss_pred cCccEEEEECCCCCEEEEEeC-----CCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCC----------
Confidence 345788999999998886532 248999999988754321 1222357899999999988765432
Q ss_pred CcccCCcccEEEEEECCCCCCCCeEEEecCC-C---------------------CeeEEEeEEecCCcEEEEEEecCCcc
Q 004766 210 TETDSNLYHEFYYHFLGTKQSEDILCWKDPE-H---------------------PKYIFSGHVTEDGQYLVMCIEENCDP 267 (732)
Q Consensus 210 ~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~-~---------------------~~~~~~~~~SpDg~~l~~~~~~~~~~ 267 (732)
.|.+|++.++.. +..+.... . ......+.|||||++|+....++
T Consensus 204 ---------~v~iwd~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg--- 269 (420)
T 3vl1_A 204 ---------TIRLWECGTGTT--IHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSG--- 269 (420)
T ss_dssp ---------CEEEEETTTTEE--EEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTS---
T ss_pred ---------cEEEeECCCCce--eEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCC---
Confidence 477788765431 12222110 0 01122456789999997765433
Q ss_pred eEEEEEEeCCCCCCCcccccccCCCCCcEEeeecccceE--EEEEecCCeEEEEeCCCCCCceEEEEeCCCCCC-ceEec
Q 004766 268 VNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQY--EVIANDDTVFTFLTNKDAPKYKIIRVDLKEPND-WFEVI 344 (732)
Q Consensus 268 ~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~-~~~l~ 344 (732)
.|.++|+.++. ....+........ ..|+|+++.+++.... ...|..+|+.++.. ...+.
T Consensus 270 --~i~i~d~~~~~-------------~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~---dg~i~vwd~~~~~~~~~~~~ 331 (420)
T 3vl1_A 270 --VITVHNVFSKE-------------QTIQLPSKFTCSCNSLTVDGNNANYIYAGYE---NGMLAQWDLRSPECPVGEFL 331 (420)
T ss_dssp --CEEEEETTTCC-------------EEEEECCTTSSCEEEEEECSSCTTEEEEEET---TSEEEEEETTCTTSCSEEEE
T ss_pred --eEEEEECCCCc-------------eeEEcccccCCCceeEEEeCCCCCEEEEEeC---CCeEEEEEcCCCcCchhhhh
Confidence 38888987642 1222222222222 2589998834444333 34789999987653 34444
Q ss_pred cCCCCCceeEEEEecCCEEEEEEecCCeeEEEEEeCCCCceee---------ecccccceeeEeecccCCc---EEEEEE
Q 004766 345 PEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLH---------QLPIEIGSVNAISARREDS---VVFISF 412 (732)
Q Consensus 345 ~~~~~~~l~~~~~~~~~~l~~~~~~~g~~~l~~~d~~~g~~~~---------~l~~~~g~v~~~~~s~d~~---~l~~~~ 412 (732)
.+. ...+..+.+.+ +.++++...+ ..|.+|++.+++... .+....+.+..+.+++++. .++..-
T Consensus 332 ~~~-~~~v~~~~~~~-~~~l~s~~~d--~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g 407 (420)
T 3vl1_A 332 INE-GTPINNVYFAA-GALFVSSGFD--TSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVG 407 (420)
T ss_dssp EST-TSCEEEEEEET-TEEEEEETTT--EEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEE
T ss_pred ccC-CCCceEEEeCC-CCEEEEecCC--ccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEc
Confidence 433 35677776655 7778887777 478888876532211 1111234566677777776 555443
Q ss_pred ecCCCCceEEEEECC
Q 004766 413 TSFLIPGIVYQCNLK 427 (732)
Q Consensus 413 ss~~~p~~~y~~d~~ 427 (732)
+. ..+..|+++
T Consensus 408 ~~----g~~~~~~~~ 418 (420)
T 3vl1_A 408 KN----NFCALYNLS 418 (420)
T ss_dssp TT----TEEEEEESC
T ss_pred CC----ceEEEEecc
Confidence 22 345556553
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.14 E-value=4.9e-08 Score=101.29 Aligned_cols=250 Identities=12% Similarity=0.033 Sum_probs=145.6
Q ss_pred CCEEEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCc----eecc-cccceeeeeEEEEe--CCcEEEEEEecCCCC
Q 004766 130 GTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQI----VEAD-ALSWFKFSSIAWTH--DSKGFFYSRYPAPKE 202 (732)
Q Consensus 130 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~----~~~~-~~~~~~~~~~~Wsp--Dg~~l~y~~~~~~~~ 202 (732)
+.-.+..++|||||++||.... ...|++||+.++. .+.. .........++|+| |++.|+....+
T Consensus 10 H~~~v~~~~~~~~~~~l~~~~~-----dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~d---- 80 (351)
T 3f3f_A 10 HDDLVHDVVYDFYGRHVATCSS-----DQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYD---- 80 (351)
T ss_dssp CSSCEEEEEECSSSSEEEEEET-----TSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETT----
T ss_pred cccceeEEEEcCCCCEEEEeeC-----CCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCC----
Confidence 3445789999999999886632 2489999998764 2111 11122357899999 68888876543
Q ss_pred CCCCCCCCcccCCcccEEEEEECCCCCCCC-----eEEEecCCCCeeEEEeEEecC--CcEEEEEEecCCcceEEEEEEe
Q 004766 203 GKDMDAGTETDSNLYHEFYYHFLGTKQSED-----ILCWKDPEHPKYIFSGHVTED--GQYLVMCIEENCDPVNKVYYCD 275 (732)
Q Consensus 203 ~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~-----~~v~~~~~~~~~~~~~~~SpD--g~~l~~~~~~~~~~~~~l~~~d 275 (732)
..|.+|++.++.... ..+.....+...+..+.|+|+ +++|+....+ ..|.++|
T Consensus 81 ---------------g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d-----g~v~iwd 140 (351)
T 3f3f_A 81 ---------------KTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGND-----GILRLYD 140 (351)
T ss_dssp ---------------SCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT-----CEEEEEE
T ss_pred ---------------CeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCC-----CcEEEec
Confidence 257888887653211 223322333445678999999 9998776543 3488889
Q ss_pred CCCCCCCcccccccCCCCCcEE---ee-------eccc-ceEEEEEec---CCeEEEEeCCCCCCceEEEEeCCCCCC--
Q 004766 276 LSALPEGLEGFKKRDGLLPFVK---LI-------DGFD-AQYEVIAND---DTVFTFLTNKDAPKYKIIRVDLKEPND-- 339 (732)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~---l~-------~~~~-~~~~~~s~d---g~~l~~~s~~~~~~~~l~~~d~~~~~~-- 339 (732)
+.++... ..+.. .. .... .....|+|+ ++.++..+.. ..+...+...+..
T Consensus 141 ~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~ 206 (351)
T 3f3f_A 141 ALEPSDL----------RSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALE----QAIIYQRGKDGKLHV 206 (351)
T ss_dssp CSSTTCT----------TCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETT----EEEEEEECTTSCEEE
T ss_pred CCChHHh----------ccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCC----CcEEEEccCCCceee
Confidence 8764311 00100 00 0001 112247776 6665554432 2344444444431
Q ss_pred ceEeccCCCCCceeEEEEecCC----EEEEEEecCCeeEEEEEeCCCC--------------------------------
Q 004766 340 WFEVIPEAERDVLESATAVNLN----QMIVSYLSDVKYVLQIRDLKNG-------------------------------- 383 (732)
Q Consensus 340 ~~~l~~~~~~~~l~~~~~~~~~----~l~~~~~~~g~~~l~~~d~~~g-------------------------------- 383 (732)
...+..+ ...+..+.+++++ .++++...++ .|++||+.++
T Consensus 207 ~~~~~~h--~~~i~~~~~~p~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (351)
T 3f3f_A 207 AAKLPGH--KSLIRSISWAPSIGRWYQLIATGCKDG--RIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDS 282 (351)
T ss_dssp EEECCCC--CSCEEEEEECCCSSCSSEEEEEEETTS--CEEEEEEEECC-------------------------------
T ss_pred eeecCCC--CcceeEEEECCCCCCcceEEEEEcCCC--eEEEEeCCCCcCccccCCcccceeccCCCccccccccccccc
Confidence 1222222 3568889999865 7888888885 5777787643
Q ss_pred --------------ceeeecccccceeeEeecccCCcEEEEEEecCCCCceEEEEECCCCC
Q 004766 384 --------------SLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 430 (732)
Q Consensus 384 --------------~~~~~l~~~~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~~ 430 (732)
+.+..+..+.+.|..+.++++++.++ +.+. -..+..|++.+++
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~-s~~~---dg~v~iw~~~~~~ 339 (351)
T 3f3f_A 283 NTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILS-SAGD---DGKVRLWKATYSN 339 (351)
T ss_dssp --------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEE-EEET---TSCEEEEEECTTS
T ss_pred ccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEE-EecC---CCcEEEEecCcCc
Confidence 11222222345677888888887554 3332 2467778877664
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=99.13 E-value=2.1e-08 Score=103.79 Aligned_cols=237 Identities=10% Similarity=0.038 Sum_probs=142.3
Q ss_pred CEEEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecccc-cceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCC
Q 004766 131 TAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADAL-SWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAG 209 (732)
Q Consensus 131 ~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~-~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~ 209 (732)
...+..+.|||||++|+-.. ...+|++||+.+|+.+.... .......++|+|+++.|+....+.
T Consensus 65 ~~~v~~~~~s~dg~~l~s~s-----~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~---------- 129 (319)
T 3frx_A 65 SHIVQDCTLTADGAYALSAS-----WDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDK---------- 129 (319)
T ss_dssp SSCEEEEEECTTSSEEEEEE-----TTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTS----------
T ss_pred cccEEEEEECCCCCEEEEEe-----CCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCC----------
Confidence 34567889999999988553 22589999999998653221 122347899999999888765433
Q ss_pred CcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCC------cEEEEEEecCCcceEEEEEEeCCCCCCCc
Q 004766 210 TETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDG------QYLVMCIEENCDPVNKVYYCDLSALPEGL 283 (732)
Q Consensus 210 ~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg------~~l~~~~~~~~~~~~~l~~~d~~~~~~~~ 283 (732)
.|.+|++... .+.....+......+.++|++ ..|+..+.+ ..+.++|+.+..
T Consensus 130 ---------~i~vwd~~~~-----~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d-----~~i~~wd~~~~~--- 187 (319)
T 3frx_A 130 ---------TIKVWTIKGQ-----CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGND-----KMVKAWNLNQFQ--- 187 (319)
T ss_dssp ---------CEEEEETTSC-----EEEEECCCSSCEEEEEECCC------CCEEEEEETT-----SCEEEEETTTTE---
T ss_pred ---------eEEEEECCCC-----eEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCC-----CEEEEEECCcch---
Confidence 5788887532 222222233456678888854 355544332 237788887632
Q ss_pred ccccccCCCCCcEEeeecccce-EEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecCCE
Q 004766 284 EGFKKRDGLLPFVKLIDGFDAQ-YEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQ 362 (732)
Q Consensus 284 ~~~~~~~~~~~~~~l~~~~~~~-~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~~ 362 (732)
....+....... ...|+|+|+.|+..+. ...|..+|+.++.....+. .. ..+..+.+++++.
T Consensus 188 ----------~~~~~~~h~~~v~~~~~sp~g~~l~s~~~----dg~i~iwd~~~~~~~~~~~-~~--~~v~~~~~sp~~~ 250 (319)
T 3frx_A 188 ----------IEADFIGHNSNINTLTASPDGTLIASAGK----DGEIMLWNLAAKKAMYTLS-AQ--DEVFSLAFSPNRY 250 (319)
T ss_dssp ----------EEEEECCCCSCEEEEEECTTSSEEEEEET----TCEEEEEETTTTEEEEEEE-CC--SCEEEEEECSSSS
T ss_pred ----------hheeecCCCCcEEEEEEcCCCCEEEEEeC----CCeEEEEECCCCcEEEEec-CC--CcEEEEEEcCCCC
Confidence 111222211111 2258999987775443 3468889998776333332 22 4578899998766
Q ss_pred EEEEEecCCeeEEEEEeCCCCceeeecccc--------cceeeEeecccCCcEEEEEEecCCCCceEEEEECCC
Q 004766 363 MIVSYLSDVKYVLQIRDLKNGSLLHQLPIE--------IGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKT 428 (732)
Q Consensus 363 l~~~~~~~g~~~l~~~d~~~g~~~~~l~~~--------~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~ 428 (732)
+++....+ .+.+|+++++.....+... ...+..+.++|||+.|+.. +. -..+..||+.+
T Consensus 251 ~la~~~~~---~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg-~~---Dg~i~vWd~~t 317 (319)
T 3frx_A 251 WLAAATAT---GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAG-YT---DNVIRVWQVMT 317 (319)
T ss_dssp EEEEEETT---EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEE-ET---TSCEEEEEEEE
T ss_pred EEEEEcCC---CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEe-ec---CceEEEEEEee
Confidence 66666554 3777787654433333211 2345578889999876533 22 24566776544
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=99.12 E-value=4.5e-09 Score=112.14 Aligned_cols=248 Identities=12% Similarity=0.036 Sum_probs=149.5
Q ss_pred EEEeEEECCC----C---cEEEEEEeccCCceEEEEEEECCCCce-----ec-cccc-----ceeeeeEEEE----eCCc
Q 004766 133 ALIKVSVSED----A---KYLAYALSYSGSDWATIKLMRIEDQIV-----EA-DALS-----WFKFSSIAWT----HDSK 190 (732)
Q Consensus 133 ~~~~~~~SPD----G---~~la~~~~~~G~e~~~i~v~dl~~g~~-----~~-~~~~-----~~~~~~~~Ws----pDg~ 190 (732)
.+..+.|+|+ | ++|+.... + ..|++||+.+++. +. .... ......++|+ ||++
T Consensus 64 ~v~~~~~~~~~~~~g~~~~~l~s~~~-d----g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 138 (397)
T 1sq9_A 64 GLHHVDVLQAIERDAFELCLVATTSF-S----GDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLS 138 (397)
T ss_dssp CEEEEEEEEEEETTTEEEEEEEEEET-T----SCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----C
T ss_pred cEEEEEEecccccCCccccEEEEEcC-C----CCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCc
Confidence 4678899999 9 88876642 2 3699999988773 32 1111 1345789999 9999
Q ss_pred E-EEEEEecCCCCCCCCCCCCcccCCcccEEEEEECCC------CCCCC---eEEEec-----CCCCeeEEEeEEecCCc
Q 004766 191 G-FFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGT------KQSED---ILCWKD-----PEHPKYIFSGHVTEDGQ 255 (732)
Q Consensus 191 ~-l~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt------~~~~~---~~v~~~-----~~~~~~~~~~~~SpDg~ 255 (732)
. |+....+ ..|++|++.+ +.... ...+.. ..+...+..+.|+|+|
T Consensus 139 ~~l~~~~~d-------------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~- 198 (397)
T 1sq9_A 139 HRLVATDVK-------------------GTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG- 198 (397)
T ss_dssp EEEEEEETT-------------------SCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-
T ss_pred eEEEEEeCC-------------------CcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-
Confidence 8 7766432 2477777766 32221 002211 1122344678999999
Q ss_pred EEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCCCCcEEeee---c---ccc-eEEEEEecCCeEEEEeCCCCCCce
Q 004766 256 YLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLID---G---FDA-QYEVIANDDTVFTFLTNKDAPKYK 328 (732)
Q Consensus 256 ~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l~~---~---~~~-~~~~~s~dg~~l~~~s~~~~~~~~ 328 (732)
.++.... ...+.++|+.++. +...+.. . ... ....|+|+++.|+..+.. +....
T Consensus 199 ~l~~~~~-----dg~i~i~d~~~~~-------------~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d-~~~g~ 259 (397)
T 1sq9_A 199 LIATGFN-----NGTVQISELSTLR-------------PLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDS-NSFGC 259 (397)
T ss_dssp EEEEECT-----TSEEEEEETTTTE-------------EEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEE-TTEEE
T ss_pred eEEEEeC-----CCcEEEEECCCCc-------------eeEEEeccccccccCCccceEEECCCCCEEEEEecC-CCCce
Confidence 5554432 2458888987632 1222222 1 111 122588998877765432 11257
Q ss_pred EEEEeCCCCCCceEeccCC-----------CCCceeEEEEecCCEEEEEEecCCeeEEEEEeCCCCceeeecc------c
Q 004766 329 IIRVDLKEPNDWFEVIPEA-----------ERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLP------I 391 (732)
Q Consensus 329 l~~~d~~~~~~~~~l~~~~-----------~~~~l~~~~~~~~~~l~~~~~~~g~~~l~~~d~~~g~~~~~l~------~ 391 (732)
|..+|+.++.....+.... ....+..+.+++++.++++...++ .|++||+.+++.+..+. .
T Consensus 260 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~ 337 (397)
T 1sq9_A 260 ITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDG--KLRFWDVKTKERITTLNMHCDDIE 337 (397)
T ss_dssp EEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTS--EEEEEETTTTEEEEEEECCGGGCS
T ss_pred EEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCC--eEEEEEcCCCceeEEEecccCccc
Confidence 9999998876334443300 135688899998667777777774 79999998887766666 3
Q ss_pred c---------------cceeeEeecccCCc---------EEEEEEecCCCCceEEEEECCCC
Q 004766 392 E---------------IGSVNAISARREDS---------VVFISFTSFLIPGIVYQCNLKTE 429 (732)
Q Consensus 392 ~---------------~g~v~~~~~s~d~~---------~l~~~~ss~~~p~~~y~~d~~~~ 429 (732)
. ...+..+.+++++. .++++.+. -..+..|++.+|
T Consensus 338 ~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~---dg~i~iw~~~~g 396 (397)
T 1sq9_A 338 IEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCL---DRSIRWFREAGG 396 (397)
T ss_dssp SGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEET---TTEEEEEEEEC-
T ss_pred chhhhhccccccccccCCceeEEEeccccccccccccccceEEEecC---CCcEEEEEcCCC
Confidence 3 55677888888873 34444433 256777777665
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=99.12 E-value=8.3e-09 Score=109.78 Aligned_cols=264 Identities=8% Similarity=-0.010 Sum_probs=153.8
Q ss_pred EEEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceeccc-ccceeeeeEEEEeCCcEEEEEEecCCCCCC------
Q 004766 132 AALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADA-LSWFKFSSIAWTHDSKGFFYSRYPAPKEGK------ 204 (732)
Q Consensus 132 ~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~-~~~~~~~~~~WspDg~~l~y~~~~~~~~~~------ 204 (732)
..+..+.|||||++|+-.. ...+|+|||+.+++.+... ........++|+|||+.|+....+..-...
T Consensus 67 ~~V~~~~~sp~~~~l~s~s-----~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~ 141 (380)
T 3iz6_a 67 GKVYSLDWTPEKNWIVSAS-----QDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQA 141 (380)
T ss_dssp SCEEEEEECTTSSCEEEEE-----TTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCS
T ss_pred cEEEEEEEcCCCCEEEEEe-----CCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCc
Confidence 4467899999999987553 2248999999998754321 111124678999999998876543211000
Q ss_pred ----------------------CCCC--C-CcccCCcccEEEEEECCCCCCCCeEEEec---CCCCeeEEEeEEec-CCc
Q 004766 205 ----------------------DMDA--G-TETDSNLYHEFYYHFLGTKQSEDILCWKD---PEHPKYIFSGHVTE-DGQ 255 (732)
Q Consensus 205 ----------------------~~~~--~-~~~~~~~~~~v~~~~lgt~~~~~~~v~~~---~~~~~~~~~~~~Sp-Dg~ 255 (732)
.+.. + ..........|.+|++.++.. +..+.. ..+...+..+.+++ ++.
T Consensus 142 ~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~--~~~~~~~~~~~h~~~v~~~~~~~~~~~ 219 (380)
T 3iz6_a 142 DRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQR--ISIFGSEFPSGHTADVLSLSINSLNAN 219 (380)
T ss_dssp SCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCE--EEEECCCSSSSCCSCEEEEEECSSSCC
T ss_pred cccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcE--EEEeecccCCCCccCeEEEEeecCCCC
Confidence 0000 0 000112345688888876542 222311 11223456778876 777
Q ss_pred EEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCCCCcEEeeecccc-eEEEEEecCCeEEEEeCCCCCCceEEEEeC
Q 004766 256 YLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDA-QYEVIANDDTVFTFLTNKDAPKYKIIRVDL 334 (732)
Q Consensus 256 ~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~ 334 (732)
.++..+.++ .+.++|+.... .....+...... ....|+|+|+.|+..+. ...|..+|+
T Consensus 220 ~l~sgs~D~-----~v~~wd~~~~~------------~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~----D~~i~lwd~ 278 (380)
T 3iz6_a 220 MFISGSCDT-----TVRLWDLRITS------------RAVRTYHGHEGDINSVKFFPDGQRFGTGSD----DGTCRLFDM 278 (380)
T ss_dssp EEEEEETTS-----CEEEEETTTTC------------CCCEEECCCSSCCCEEEECTTSSEEEEECS----SSCEEEEET
T ss_pred EEEEEECCC-----eEEEEECCCCC------------cceEEECCcCCCeEEEEEecCCCeEEEEcC----CCeEEEEEC
Confidence 776554433 37788886421 112233222221 22358999987765433 346888898
Q ss_pred CCCCCceEeccCCC-----CCceeEEEEecCCEEEEEEecCCeeEEEEEeCCCCceeeecc----cccceeeEeecccCC
Q 004766 335 KEPNDWFEVIPEAE-----RDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLP----IEIGSVNAISARRED 405 (732)
Q Consensus 335 ~~~~~~~~l~~~~~-----~~~l~~~~~~~~~~l~~~~~~~g~~~l~~~d~~~g~~~~~l~----~~~g~v~~~~~s~d~ 405 (732)
.++.....+..+.. ...+..+.+++++.+++....++ .|++||..+++....+. .+.+.|..+.+++++
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg--~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg 356 (380)
T 3iz6_a 279 RTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNG--DCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDG 356 (380)
T ss_dssp TTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTS--CEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSS
T ss_pred CCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCC--CEEEEECCCCceEEEEecccCCCCCceEEEEECCCC
Confidence 87753333322211 12367788888777777777774 78999988777644442 235667888999999
Q ss_pred cEEEEEEecCCCCceEEEEECCCC
Q 004766 406 SVVFISFTSFLIPGIVYQCNLKTE 429 (732)
Q Consensus 406 ~~l~~~~ss~~~p~~~y~~d~~~~ 429 (732)
..|+ +.+. -..+..|++.++
T Consensus 357 ~~l~-sgs~---D~~i~iW~~~~~ 376 (380)
T 3iz6_a 357 SALC-TGSW---DKNLKIWAFSGH 376 (380)
T ss_dssp SEEE-EECT---TSCEEEEECCSS
T ss_pred CEEE-EeeC---CCCEEEEecCCC
Confidence 8554 3332 246777777654
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.11 E-value=1.6e-08 Score=105.94 Aligned_cols=251 Identities=11% Similarity=0.012 Sum_probs=142.2
Q ss_pred CCEEEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCce--ec-ccccceeeeeEEEEeCCcEEEEEEecCCCCCCCC
Q 004766 130 GTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIV--EA-DALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDM 206 (732)
Q Consensus 130 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~--~~-~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~ 206 (732)
+...+..++|||||++||.... ..++++||+.++.. +. .......+..++|+|||+.|+....+.
T Consensus 60 h~~~v~~~~~sp~g~~l~s~s~-----D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~------- 127 (345)
T 3fm0_A 60 HQRTVRKVAWSPCGNYLASASF-----DATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDK------- 127 (345)
T ss_dssp CSSCEEEEEECTTSSEEEEEET-----TSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTS-------
T ss_pred cCCcEEEEEECCCCCEEEEEEC-----CCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCC-------
Confidence 3445788999999999986642 24688999887652 11 111122357899999999888775433
Q ss_pred CCCCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccc
Q 004766 207 DAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGF 286 (732)
Q Consensus 207 ~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~ 286 (732)
.|++|++.++... .++.....+...+..+.|+|||++|+..+.++. +.+++..++.
T Consensus 128 ------------~v~iwd~~~~~~~-~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~-----i~~w~~~~~~------ 183 (345)
T 3fm0_A 128 ------------SVWVWEVDEEDEY-ECVSVLNSHTQDVKHVVWHPSQELLASASYDDT-----VKLYREEEDD------ 183 (345)
T ss_dssp ------------CEEEEEECTTSCE-EEEEEECCCCSCEEEEEECSSSSCEEEEETTSC-----EEEEEEETTE------
T ss_pred ------------eEEEEECCCCCCe-EEEEEecCcCCCeEEEEECCCCCEEEEEeCCCc-----EEEEEecCCC------
Confidence 5888888765321 122222223345678999999999887664433 5556655421
Q ss_pred cccCCCCCcEEeeecccceE-EEEEecCCeEEEEeCCCCCCceEEEEeCCCCC----------Cce---EeccCCCCCce
Q 004766 287 KKRDGLLPFVKLIDGFDAQY-EVIANDDTVFTFLTNKDAPKYKIIRVDLKEPN----------DWF---EVIPEAERDVL 352 (732)
Q Consensus 287 ~~~~~~~~~~~l~~~~~~~~-~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~----------~~~---~l~~~~~~~~l 352 (732)
......+........ ..|+|+|+.|+..+.++ ..+||.....+.. .+. .+.. .....+
T Consensus 184 -----~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~--~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v 255 (345)
T 3fm0_A 184 -----WVCCATLEGHESTVWSLAFDPSGQRLASCSDDR--TVRIWRQYLPGNEQGVACSGSDPSWKCICTLSG-FHSRTI 255 (345)
T ss_dssp -----EEEEEEECCCSSCEEEEEECTTSSEEEEEETTS--CEEEEEEECTTCTTCCCCC---CEEEEEEEECS-SCSSCE
T ss_pred -----EEEEEEecCCCCceEEEEECCCCCEEEEEeCCC--eEEEeccccCCCCccceeeccCCccceeEEecC-CCCCcE
Confidence 000112221111112 25899998877655432 3344443222111 011 1111 123567
Q ss_pred eEEEEecCCEEEEEEecCCeeEEEEEeCCCCcee----ee-----cccccceeeEeecccCCcEEEEEEecCCCCceEEE
Q 004766 353 ESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLL----HQ-----LPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQ 423 (732)
Q Consensus 353 ~~~~~~~~~~l~~~~~~~g~~~l~~~d~~~g~~~----~~-----l~~~~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~ 423 (732)
..+.+++++..+++...++ .|.+|+.+.+... .. ...+...|..++++|++..++++.+.. ..+..
T Consensus 256 ~~v~~~~~~~~l~s~~~d~--~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~D---g~v~~ 330 (345)
T 3fm0_A 256 YDIAWCQLTGALATACGDD--AIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDD---GEVAF 330 (345)
T ss_dssp EEEEECTTTCCEEEEETTS--CEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETT---SCEEE
T ss_pred EEEEEecCCCEEEEEeCCC--eEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCC---CcEEE
Confidence 7888888666677777775 4666766533210 01 112345678889999886555555542 46777
Q ss_pred EECCCC
Q 004766 424 CNLKTE 429 (732)
Q Consensus 424 ~d~~~~ 429 (732)
+++.++
T Consensus 331 W~~~~~ 336 (345)
T 3fm0_A 331 WKYQRP 336 (345)
T ss_dssp EEECC-
T ss_pred EEecCC
Confidence 777665
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.11 E-value=2.7e-08 Score=104.94 Aligned_cols=245 Identities=13% Similarity=-0.006 Sum_probs=147.1
Q ss_pred CEEEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCC--ceecc-cccceeeeeEEEEeC--CcEEEEEEecCCCCCCC
Q 004766 131 TAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQ--IVEAD-ALSWFKFSSIAWTHD--SKGFFYSRYPAPKEGKD 205 (732)
Q Consensus 131 ~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g--~~~~~-~~~~~~~~~~~WspD--g~~l~y~~~~~~~~~~~ 205 (732)
...+..++|||||++||.... + ..|+|||+.++ +.+.. .........++|+|+ ++.|+....+
T Consensus 11 ~~~v~~~~~s~~~~~l~~~~~-d----g~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d------- 78 (379)
T 3jrp_A 11 NELIHDAVLDYYGKRLATCSS-D----KTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD------- 78 (379)
T ss_dssp CCCEEEEEECSSSSEEEEEET-T----SCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT-------
T ss_pred cccEEEEEEcCCCCEEEEEEC-C----CcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccC-------
Confidence 345778999999999986642 2 36899999743 33221 111223478999988 8888776533
Q ss_pred CCCCCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecC--CcEEEEEEecCCcceEEEEEEeCCCCCCCc
Q 004766 206 MDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTED--GQYLVMCIEENCDPVNKVYYCDLSALPEGL 283 (732)
Q Consensus 206 ~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpD--g~~l~~~~~~~~~~~~~l~~~d~~~~~~~~ 283 (732)
..|.+|++.++....+..+ ..+...+..+.|+|+ |++|+....+ ..+.++|+.+...
T Consensus 79 ------------g~v~iwd~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~l~~~~~d-----~~i~v~d~~~~~~-- 137 (379)
T 3jrp_A 79 ------------GKVLIWKEENGRWSQIAVH--AVHSASVNSVQWAPHEYGPLLLVASSD-----GKVSVVEFKENGT-- 137 (379)
T ss_dssp ------------SCEEEEEEETTEEEEEEEE--CCCSSCEEEEEECCGGGCSEEEEEETT-----SEEEEEECCTTSC--
T ss_pred ------------CEEEEEEcCCCceeEeeee--cCCCcceEEEEeCCCCCCCEEEEecCC-----CcEEEEecCCCCc--
Confidence 2578888876532222222 223345678999999 8988776543 3478888876421
Q ss_pred ccccccCCCCCcEEeeecccce-EEEEEe-------------cCCeEEEEeCCCCCCceEEEEeCCCCCCc----eEecc
Q 004766 284 EGFKKRDGLLPFVKLIDGFDAQ-YEVIAN-------------DDTVFTFLTNKDAPKYKIIRVDLKEPNDW----FEVIP 345 (732)
Q Consensus 284 ~~~~~~~~~~~~~~l~~~~~~~-~~~~s~-------------dg~~l~~~s~~~~~~~~l~~~d~~~~~~~----~~l~~ 345 (732)
.....+....... ...|+| ++..|+..+.. ..|..+|+.++... ..+..
T Consensus 138 ---------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~ 204 (379)
T 3jrp_A 138 ---------TSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGAD----NLVKIWKYNSDAQTYVLESTLEG 204 (379)
T ss_dssp ---------CCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETT----SCEEEEEEETTTTEEEEEEEECC
T ss_pred ---------eeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCC----CeEEEEEecCCCcceeeEEEEec
Confidence 1111222211111 224777 57766655443 35777777655421 12222
Q ss_pred CCCCCceeEEEEecC---CEEEEEEecCCeeEEEEEeCCCCce---eeeccc--ccceeeEeecccCCcEEEEEEecCCC
Q 004766 346 EAERDVLESATAVNL---NQMIVSYLSDVKYVLQIRDLKNGSL---LHQLPI--EIGSVNAISARREDSVVFISFTSFLI 417 (732)
Q Consensus 346 ~~~~~~l~~~~~~~~---~~l~~~~~~~g~~~l~~~d~~~g~~---~~~l~~--~~g~v~~~~~s~d~~~l~~~~ss~~~ 417 (732)
+ ...+..+.++++ +.++++...++ .|.+||+.+++. ...+.. ....+..+.++++++.++....
T Consensus 205 h--~~~v~~~~~sp~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~---- 276 (379)
T 3jrp_A 205 H--SDWVRDVAWSPTVLLRSYLASVSQDR--TCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGG---- 276 (379)
T ss_dssp C--SSCEEEEEECCCCSSSEEEEEEETTS--CEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEES----
T ss_pred c--cCcEeEEEECCCCCCCCeEEEEeCCC--EEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecC----
Confidence 3 356888999987 67888888775 578888876531 122222 3456778889999986654432
Q ss_pred CceEEEEECCCC
Q 004766 418 PGIVYQCNLKTE 429 (732)
Q Consensus 418 p~~~y~~d~~~~ 429 (732)
-..++.|++..+
T Consensus 277 dg~i~iw~~~~~ 288 (379)
T 3jrp_A 277 DNKVTLWKENLE 288 (379)
T ss_dssp SSSEEEEEEEET
T ss_pred CCcEEEEeCCCC
Confidence 245666666543
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.11 E-value=4.4e-10 Score=119.25 Aligned_cols=227 Identities=6% Similarity=-0.042 Sum_probs=133.2
Q ss_pred EEeEEECCCCcEEEEEEeccCCceEEEEEEECCCC--ceeccc-ccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCC
Q 004766 134 LIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQ--IVEADA-LSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGT 210 (732)
Q Consensus 134 ~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g--~~~~~~-~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~ 210 (732)
+..++|||||++||... ....|++||+.++ +.+... ........++|+|||+.|+....+.
T Consensus 14 v~~~~~s~~g~~l~~~~-----~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~----------- 77 (377)
T 3dwl_C 14 SYEHAFNSQRTEFVTTT-----ATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDR----------- 77 (377)
T ss_dssp CSCCEECSSSSEEECCC-----SSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTS-----------
T ss_pred EEEEEECCCCCEEEEec-----CCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCC-----------
Confidence 44788999999988542 2357999999988 333211 1122357899999999888775432
Q ss_pred cccCCcccEEEEEECCCCC-CCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCccccccc
Q 004766 211 ETDSNLYHEFYYHFLGTKQ-SEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKR 289 (732)
Q Consensus 211 ~~~~~~~~~v~~~~lgt~~-~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~ 289 (732)
.|++|++.++. ......+ ..+...+..+.|+|||++|+....++ .+.++|+.++..
T Consensus 78 --------~v~vwd~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d~-----~i~iwd~~~~~~-------- 134 (377)
T 3dwl_C 78 --------NAYVYEKRPDGTWKQTLVL--LRLNRAATFVRWSPNEDKFAVGSGAR-----VISVCYFEQEND-------- 134 (377)
T ss_dssp --------SEEEC------CCCCEEEC--CCCSSCEEEEECCTTSSCCEEEESSS-----CEEECCC-------------
T ss_pred --------eEEEEEcCCCCceeeeeEe--cccCCceEEEEECCCCCEEEEEecCC-----eEEEEEECCccc--------
Confidence 47888887654 1122222 22334567899999999988766433 377778776320
Q ss_pred CCCCCcEEeeecccceE--EEEEecCCeEEEEeCCCCCCceEEEEeCCCCC-----------------CceEeccCCCCC
Q 004766 290 DGLLPFVKLIDGFDAQY--EVIANDDTVFTFLTNKDAPKYKIIRVDLKEPN-----------------DWFEVIPEAERD 350 (732)
Q Consensus 290 ~~~~~~~~l~~~~~~~~--~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~-----------------~~~~l~~~~~~~ 350 (732)
......+.......+ ..|+|+++.|+..+.. ..|..+|+.... .....+.+ ..
T Consensus 135 --~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 206 (377)
T 3dwl_C 135 --WWVSKHLKRPLRSTILSLDWHPNNVLLAAGCAD----RKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPS--GG 206 (377)
T ss_dssp --CCCCEEECSSCCSCEEEEEECTTSSEEEEEESS----SCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCC--SS
T ss_pred --ceeeeEeecccCCCeEEEEEcCCCCEEEEEeCC----CEEEEEEEEecccCCCccccccccccchhhhhhcccC--Cc
Confidence 001223322122222 2588998877765543 346666654211 01111122 35
Q ss_pred ceeEEEEecCCEEEEEEecCCeeEEEEEeCCCCce----eeecccccceeeEeecccCCcEEE
Q 004766 351 VLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSL----LHQLPIEIGSVNAISARREDSVVF 409 (732)
Q Consensus 351 ~l~~~~~~~~~~l~~~~~~~g~~~l~~~d~~~g~~----~~~l~~~~g~v~~~~~s~d~~~l~ 409 (732)
.+..+.+++++.++++...++ .|++||+.+++. +..+..+...+..+.+++++..++
T Consensus 207 ~v~~~~~sp~~~~l~~~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 267 (377)
T 3dwl_C 207 WVHAVGFSPSGNALAYAGHDS--SVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVA 267 (377)
T ss_dssp SEEEEEECTTSSCEEEEETTT--EEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEE
T ss_pred eEEEEEECCCCCEEEEEeCCC--cEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEE
Confidence 578899998777777777774 688899887765 445555566677888899987543
|
| >3ds8_A LIN2722 protein; unkonwn function, structural genomics, PSI, MCSG, P structure initiative; 1.80A {Listeria innocua} | Back alignment and structure |
|---|
Probab=99.11 E-value=4.2e-10 Score=112.47 Aligned_cols=154 Identities=19% Similarity=0.083 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCC-----eeeEEEEcCCcccccccccCCCCCccccccCC
Q 004766 542 FDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPD-----LFGCALAHVGVMDMLRYHKFTIGHAWVSDFGC 616 (732)
Q Consensus 542 ~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~-----~f~a~v~~~p~~d~~~~~~~~~~~~~~~~~g~ 616 (732)
.+|+.++++.|.++- .-+++.++||||||+++..++.++|+ .++++|+..+..+........ ..+ ...+.
T Consensus 77 a~~l~~~i~~l~~~~--~~~~~~lvGHS~Gg~ia~~~~~~~~~~~~~~~v~~lv~i~~p~~g~~~~~~~--~~~-~~~~~ 151 (254)
T 3ds8_A 77 SKWLKIAMEDLKSRY--GFTQMDGVGHSNGGLALTYYAEDYAGDKTVPTLRKLVAIGSPFNDLDPNDNG--MDL-SFKKL 151 (254)
T ss_dssp HHHHHHHHHHHHHHH--CCSEEEEEEETHHHHHHHHHHHHSTTCTTSCEEEEEEEESCCTTCSCHHHHC--SCT-TCSSC
T ss_pred HHHHHHHHHHHHHHh--CCCceEEEEECccHHHHHHHHHHccCCccccceeeEEEEcCCcCcccccccc--ccc-ccccC
Confidence 456666667777652 22689999999999999999999998 899999888766543322110 011 11233
Q ss_pred CCCHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEeeC------CCCCCCchHHHHHHHHHHHhhcCCCCCCCCCC
Q 004766 617 SEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTAD------HDDRVVPLHSLKLLATMQYVLCTSLENSPQTN 690 (732)
Q Consensus 617 p~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~------~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~ 690 (732)
|.....+..+.... ..+. ...|+|.++|. +|..||+..+..+...+... ..
T Consensus 152 p~~~~~~~~~~~~~--~~~~-----------~~~~vl~I~G~~~~~~~~Dg~Vp~~ss~~l~~~~~~~----------~~ 208 (254)
T 3ds8_A 152 PNSTPQMDYFIKNQ--TEVS-----------PDLEVLAIAGELSEDNPTDGIVPTISSLATRLFMPGS----------AK 208 (254)
T ss_dssp SSCCHHHHHHHHTG--GGSC-----------TTCEEEEEEEESBTTBCBCSSSBHHHHTGGGGTSBTT----------BS
T ss_pred CcchHHHHHHHHHH--hhCC-----------CCcEEEEEEecCCCCCCCCcEeeHHHHHHHHHHhhcc----------Cc
Confidence 43222333332211 1111 25799999999 99999999988877666543 23
Q ss_pred CEEEEEeCC--CCCCCCCchHHHHHHHHHHHHHHHHHh
Q 004766 691 PIIGRIERK--AGHGVGLPTQKMIDEAADRYGFMAKML 726 (732)
Q Consensus 691 ~~~~~~~~~--~gH~~~~~~~~~~~~~~~~~~fl~~~l 726 (732)
....+++.+ ++|....... +..+.+..||.+..
T Consensus 209 ~~~~~~~~g~~a~Hs~l~~~~---~v~~~i~~fL~~~~ 243 (254)
T 3ds8_A 209 AYIEDIQVGEDAVHQTLHETP---KSIEKTYWFLEKFK 243 (254)
T ss_dssp EEEEEEEESGGGCGGGGGGSH---HHHHHHHHHHHTCC
T ss_pred ceEEEEEeCCCCchhcccCCH---HHHHHHHHHHHHhc
Confidence 345555555 6687544322 35667788887754
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.09 E-value=2e-08 Score=106.20 Aligned_cols=258 Identities=10% Similarity=0.004 Sum_probs=132.2
Q ss_pred EeEEECCCCcEEEEEEeccCCceEEEEEEECC-CCceecc-ccc-ceeeeeEEEEeCCcEE-EEEEecCCCCCCCCCCCC
Q 004766 135 IKVSVSEDAKYLAYALSYSGSDWATIKLMRIE-DQIVEAD-ALS-WFKFSSIAWTHDSKGF-FYSRYPAPKEGKDMDAGT 210 (732)
Q Consensus 135 ~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~-~g~~~~~-~~~-~~~~~~~~WspDg~~l-~y~~~~~~~~~~~~~~~~ 210 (732)
..++|||||++|+.+ +.+ .|.+||+. +|+.... ... ......++|+|||+.| +|+.... .
T Consensus 43 ~~~a~spdg~~l~~~-~~~-----~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~----------~ 106 (365)
T 1jof_A 43 SWMTFDHERKNIYGA-AMK-----KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQP----------P 106 (365)
T ss_dssp SEEEECTTSSEEEEE-EBT-----EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSST----------T
T ss_pred cEEEECCCCCEEEEE-ccc-----eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCC----------c
Confidence 468899999987544 322 78899987 7775321 110 0113568999999974 4443210 0
Q ss_pred cccCC-----cccEEEEEECCC-CCCCC-eEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCC-CCCCC
Q 004766 211 ETDSN-----LYHEFYYHFLGT-KQSED-ILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLS-ALPEG 282 (732)
Q Consensus 211 ~~~~~-----~~~~v~~~~lgt-~~~~~-~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~-~~~~~ 282 (732)
..... ....+.++++.. +.... +.++... .......++|||||++|++.. .+. ..|++++++ ++..
T Consensus 107 ~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~spdG~~l~~~~-~~~---~~v~~~~~~~~g~~- 180 (365)
T 1jof_A 107 YAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQ-ENTGIHGMVFDPTETYLYSAD-LTA---NKLWTHRKLASGEV- 180 (365)
T ss_dssp CCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECC-TTCCEEEEEECTTSSEEEEEE-TTT---TEEEEEEECTTSCE-
T ss_pred ceeccceeecCCceEEEEccCCCCcCcceEeeEEeC-CCCcceEEEECCCCCEEEEEc-CCC---CEEEEEEECCCCCE-
Confidence 00000 233566777753 22111 1111111 122456889999999986543 222 458888876 4320
Q ss_pred cccccccCCCCCcEEee--e-cccceEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCce----Ee--ccCC-CC-C-
Q 004766 283 LEGFKKRDGLLPFVKLI--D-GFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWF----EV--IPEA-ER-D- 350 (732)
Q Consensus 283 ~~~~~~~~~~~~~~~l~--~-~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~----~l--~~~~-~~-~- 350 (732)
.....+. . +.......|+|||+.+|+....+ ....++.++.+++. .. .+ ++.. .. .
T Consensus 181 ----------~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~-~~v~v~~~~~~~g~-~~~~~~~~~~~~~~~~g~~~ 248 (365)
T 1jof_A 181 ----------ELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAG-NRICEYVIDPATHM-PVYTHHSFPLIPPGIPDRDP 248 (365)
T ss_dssp ----------EEEEEEECSSTTCCEEEEEECTTSSEEEEEETTT-TEEEEEEECTTTCC-EEEEEEEEESSCTTCCCBCT
T ss_pred ----------EEeeeEecCCCCCCCCEeEECCCCCEEEEEECCC-CeEEEEEEeCCCCc-EEEccceEEcCCCCcCCccc
Confidence 0011111 1 11222336999999888765432 24455556655554 21 11 2221 01 1
Q ss_pred ------ceeEEE-EecCCE-EEEEEecCC---eeEEEEEeCC-CCceeee---cccccceeeEeeccc---CCcEEEEEE
Q 004766 351 ------VLESAT-AVNLNQ-MIVSYLSDV---KYVLQIRDLK-NGSLLHQ---LPIEIGSVNAISARR---EDSVVFISF 412 (732)
Q Consensus 351 ------~l~~~~-~~~~~~-l~~~~~~~g---~~~l~~~d~~-~g~~~~~---l~~~~g~v~~~~~s~---d~~~l~~~~ 412 (732)
....+. ++++++ |++...... ...|.+|+++ +|+.... +.........+.++| |++.+++..
T Consensus 249 ~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~ 328 (365)
T 1jof_A 249 ETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITD 328 (365)
T ss_dssp TTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEEC
T ss_pred ccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEE
Confidence 466788 888654 554443322 1268888875 5664221 221222234556678 788776543
Q ss_pred ecCCCCceEEEEECCCC
Q 004766 413 TSFLIPGIVYQCNLKTE 429 (732)
Q Consensus 413 ss~~~p~~~y~~d~~~~ 429 (732)
.. -..+..+++...
T Consensus 329 ~~---~~~v~v~~~~~~ 342 (365)
T 1jof_A 329 DQ---EGWLEIYRWKDE 342 (365)
T ss_dssp SS---SCEEEEEEEETT
T ss_pred cC---CCeEEEEEEchh
Confidence 21 245555554443
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.09 E-value=1.5e-08 Score=106.16 Aligned_cols=245 Identities=9% Similarity=0.009 Sum_probs=148.6
Q ss_pred EEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceeccc--ccceeeeeEEEEeC---CcEEEEEEecCCCCCCCCC
Q 004766 133 ALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADA--LSWFKFSSIAWTHD---SKGFFYSRYPAPKEGKDMD 207 (732)
Q Consensus 133 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~--~~~~~~~~~~WspD---g~~l~y~~~~~~~~~~~~~ 207 (732)
.+..++|||||++++.+.+... ....|++||+.+++..... ........++|+|+ |+.|+....+
T Consensus 20 ~v~~~~~~p~~~~l~~~~s~~~-~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d--------- 89 (357)
T 3i2n_A 20 TVFDCKWVPCSAKFVTMGNFAR-GTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFG--------- 89 (357)
T ss_dssp CEEEEEECTTSSEEEEEEC--C-CCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETT---------
T ss_pred ceEEEEEcCCCceEEEecCccC-CCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCC---------
Confidence 4678999999988776643211 1368999999998753221 11223578999999 5777766433
Q ss_pred CCCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEe------EEecCCcEEEEEEecCCcceEEEEEEeCCCCCC
Q 004766 208 AGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSG------HVTEDGQYLVMCIEENCDPVNKVYYCDLSALPE 281 (732)
Q Consensus 208 ~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~------~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~ 281 (732)
..|.+|++.++... +..+... ...+..+ +|+|||++|+....++ .+.++|+.++..
T Consensus 90 ----------g~i~iwd~~~~~~~-~~~~~~~--~~~v~~~~~~~~~~~s~~~~~l~~~~~d~-----~i~vwd~~~~~~ 151 (357)
T 3i2n_A 90 ----------GNLHIWNLEAPEMP-VYSVKGH--KEIINAIDGIGGLGIGEGAPEIVTGSRDG-----TVKVWDPRQKDD 151 (357)
T ss_dssp ----------SCEEEECTTSCSSC-SEEECCC--SSCEEEEEEESGGGCC-CCCEEEEEETTS-----CEEEECTTSCSS
T ss_pred ----------CeEEEEeCCCCCcc-EEEEEec--ccceEEEeeccccccCCCccEEEEEeCCC-----eEEEEeCCCCCC
Confidence 35888998876422 2233322 2234445 4689999987665433 378889876421
Q ss_pred CcccccccCCCCCcEEeeeccc----ceEE-E----EEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCce
Q 004766 282 GLEGFKKRDGLLPFVKLIDGFD----AQYE-V----IANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVL 352 (732)
Q Consensus 282 ~~~~~~~~~~~~~~~~l~~~~~----~~~~-~----~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l 352 (732)
+...+..... .... . |+++++.++..+. ...|..+|+.++. ......+ ...+
T Consensus 152 ------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~----d~~i~i~d~~~~~-~~~~~~~--~~~v 212 (357)
T 3i2n_A 152 ------------PVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYD----NGDIKLFDLRNMA-LRWETNI--KNGV 212 (357)
T ss_dssp ------------CSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEET----TSEEEEEETTTTE-EEEEEEC--SSCE
T ss_pred ------------cceeccccCCCCCCceEEEEEEeccCCCCCEEEEEcc----CCeEEEEECccCc-eeeecCC--CCce
Confidence 1222211110 1111 1 5688887776543 3478999998876 2333333 3568
Q ss_pred eEEEEec---CCEEEEEEecCCeeEEEEEeCCCCceeeecc-----cccceeeEeecccCCcEEEEEEecCCCCceEEEE
Q 004766 353 ESATAVN---LNQMIVSYLSDVKYVLQIRDLKNGSLLHQLP-----IEIGSVNAISARREDSVVFISFTSFLIPGIVYQC 424 (732)
Q Consensus 353 ~~~~~~~---~~~l~~~~~~~g~~~l~~~d~~~g~~~~~l~-----~~~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~ 424 (732)
..+.+++ ++..++....++ .|++||+.+++....+. .....+..+.+++++..++++.+. -..+..|
T Consensus 213 ~~~~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---dg~i~iw 287 (357)
T 3i2n_A 213 CSLEFDRKDISMNKLVATSLEG--KFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGG---AGGLHLW 287 (357)
T ss_dssp EEEEESCSSSSCCEEEEEESTT--EEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEET---TSEEEEE
T ss_pred EEEEcCCCCCCCCEEEEECCCC--eEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeC---CCcEEEe
Confidence 8889986 566666666664 68888887555433333 345667788889988755555444 2467788
Q ss_pred ECCCC
Q 004766 425 NLKTE 429 (732)
Q Consensus 425 d~~~~ 429 (732)
|+.++
T Consensus 288 d~~~~ 292 (357)
T 3i2n_A 288 KYEYP 292 (357)
T ss_dssp EEECC
T ss_pred ecCCC
Confidence 87655
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.09 E-value=6.7e-09 Score=112.92 Aligned_cols=182 Identities=9% Similarity=-0.024 Sum_probs=105.8
Q ss_pred eeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCCcccEEEEEECCCCCCCCeEEEecCCCC----eeEEEeEEecCCc
Q 004766 180 FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHP----KYIFSGHVTEDGQ 255 (732)
Q Consensus 180 ~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~----~~~~~~~~SpDg~ 255 (732)
...++|||||+.|+..+.++ .|.+|+..+ ++.....+. .-+.+++|||||+
T Consensus 88 V~~vawSPdG~~LAs~s~dg-------------------~V~iwd~~~------~l~~l~~~~~~~~~sv~svafSPDG~ 142 (588)
T 2j04_A 88 PRVCKPSPIDDWMAVLSNNG-------------------NVSVFKDNK------MLTNLDSKGNLSSRTYHCFEWNPIES 142 (588)
T ss_dssp EEEEEECSSSSCEEEEETTS-------------------CEEEEETTE------EEEECCCSSCSTTTCEEEEEECSSSS
T ss_pred EEEEEECCCCCEEEEEeCCC-------------------cEEEEeCCc------eeeeccCCCccccccEEEEEEcCCCC
Confidence 47889999999998876443 467777432 222211111 1256899999999
Q ss_pred EEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCC--CCcEEeeecc----cceE-EEEEecCCeEEEEeCCCCCCce
Q 004766 256 YLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGL--LPFVKLIDGF----DAQY-EVIANDDTVFTFLTNKDAPKYK 328 (732)
Q Consensus 256 ~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~--~~~~~l~~~~----~~~~-~~~s~dg~~l~~~s~~~~~~~~ 328 (732)
+|+..+.++ .|.++++.++... ++ .....+.... .... ..|+||| ++..+. ...
T Consensus 143 ~LAsgs~DG-----tVkIWd~~~~~l~--------~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~----D~t 203 (588)
T 2j04_A 143 SIVVGNEDG-----ELQFFSIRKNSEN--------TPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALS----NNS 203 (588)
T ss_dssp CEEEEETTS-----EEEEEECCCCTTT--------CCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEET----TCC
T ss_pred EEEEEcCCC-----EEEEEECCCCccc--------cccceeeeeeecccccccccEEEEEEcCCc--EEEEeC----CCe
Confidence 998876543 3777788764210 00 0012221111 1112 2599998 443333 235
Q ss_pred EEEEeCCCCCC---ceEeccCCCCCceeEEEEecCCEEEEEEecCCeeEEEEEeCCCCceeeecc-cccceeeEeec--c
Q 004766 329 IIRVDLKEPND---WFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLP-IEIGSVNAISA--R 402 (732)
Q Consensus 329 l~~~d~~~~~~---~~~l~~~~~~~~l~~~~~~~~~~l~~~~~~~g~~~l~~~d~~~g~~~~~l~-~~~g~v~~~~~--s 402 (732)
+..+++.++.. ++.+.+.. ...+.++.|+ ++.++.. . + ..|++||+.+++. ..+. .+...+..+.+ +
T Consensus 204 VrlWd~~~~~~~~~~~tL~~~h-~~~V~svaFs-g~~LASa-~-~--~tIkLWd~~~~~~-~~~~~gh~~~V~~va~~~s 276 (588)
T 2j04_A 204 VFSMTVSASSHQPVSRMIQNAS-RRKITDLKIV-DYKVVLT-C-P--GYVHKIDLKNYSI-SSLKTGSLENFHIIPLNHE 276 (588)
T ss_dssp EEEECCCSSSSCCCEEEEECCC-SSCCCCEEEE-TTEEEEE-C-S--SEEEEEETTTTEE-EEEECSCCSCCCEEEETTC
T ss_pred EEEEECCCCccccceeeecccc-cCcEEEEEEE-CCEEEEE-e-C--CeEEEEECCCCeE-EEEEcCCCceEEEEEeeeC
Confidence 88888877652 23343222 2567788888 4555444 3 3 4899999985554 2333 23556777788 8
Q ss_pred cCCcEEEEEE
Q 004766 403 REDSVVFISF 412 (732)
Q Consensus 403 ~d~~~l~~~~ 412 (732)
+|+..+..++
T Consensus 277 ~d~~~La~a~ 286 (588)
T 2j04_A 277 KESTILLMSN 286 (588)
T ss_dssp SSCEEEEECS
T ss_pred CCCCEEEEEc
Confidence 8887665544
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.08 E-value=1.2e-08 Score=111.07 Aligned_cols=193 Identities=9% Similarity=0.024 Sum_probs=117.4
Q ss_pred EEEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecccccce-----eeeeEEEEeCCcEEEEEEecCCCCCCCC
Q 004766 132 AALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWF-----KFSSIAWTHDSKGFFYSRYPAPKEGKDM 206 (732)
Q Consensus 132 ~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~~~~-----~~~~~~WspDg~~l~y~~~~~~~~~~~~ 206 (732)
-.+..++|||||++||-+.. + .++++||.++ .+....... .+.+++|||||+.|+....+
T Consensus 86 ~~V~~vawSPdG~~LAs~s~-d----g~V~iwd~~~--~l~~l~~~~~~~~~sv~svafSPDG~~LAsgs~D-------- 150 (588)
T 2j04_A 86 CYPRVCKPSPIDDWMAVLSN-N----GNVSVFKDNK--MLTNLDSKGNLSSRTYHCFEWNPIESSIVVGNED-------- 150 (588)
T ss_dssp CCEEEEEECSSSSCEEEEET-T----SCEEEEETTE--EEEECCCSSCSTTTCEEEEEECSSSSCEEEEETT--------
T ss_pred CcEEEEEECCCCCEEEEEeC-C----CcEEEEeCCc--eeeeccCCCccccccEEEEEEcCCCCEEEEEcCC--------
Confidence 34789999999999996642 2 3688999544 221100111 25789999999999987643
Q ss_pred CCCCcccCCcccEEEEEECCCCCCCCe---EEEec----CCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCC
Q 004766 207 DAGTETDSNLYHEFYYHFLGTKQSEDI---LCWKD----PEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSAL 279 (732)
Q Consensus 207 ~~~~~~~~~~~~~v~~~~lgt~~~~~~---~v~~~----~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~ 279 (732)
..|.+|++.++..... .+..- ..+..++.+++||||| ++..+.+ +.++++++.++
T Consensus 151 -----------GtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D-----~tVrlWd~~~~ 212 (588)
T 2j04_A 151 -----------GELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSN-----NSVFSMTVSAS 212 (588)
T ss_dssp -----------SEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETT-----CCEEEECCCSS
T ss_pred -----------CEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCC-----CeEEEEECCCC
Confidence 3688999877532111 12221 2234578899999999 5444432 33788888764
Q ss_pred CCCcccccccCCCCCcEEeeeccc--ceEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEec-cCCCCCceeEEE
Q 004766 280 PEGLEGFKKRDGLLPFVKLIDGFD--AQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVI-PEAERDVLESAT 356 (732)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~-~~~~~~~l~~~~ 356 (732)
.. ...+..+..+.. ..-..|+ |+.|+..+ ...|..+|+.++. ...+. .+ ...+.++.
T Consensus 213 ~~----------~~~~~tL~~~h~~~V~svaFs--g~~LASa~-----~~tIkLWd~~~~~-~~~~~~gh--~~~V~~va 272 (588)
T 2j04_A 213 SH----------QPVSRMIQNASRRKITDLKIV--DYKVVLTC-----PGYVHKIDLKNYS-ISSLKTGS--LENFHIIP 272 (588)
T ss_dssp SS----------CCCEEEEECCCSSCCCCEEEE--TTEEEEEC-----SSEEEEEETTTTE-EEEEECSC--CSCCCEEE
T ss_pred cc----------ccceeeecccccCcEEEEEEE--CCEEEEEe-----CCeEEEEECCCCe-EEEEEcCC--CceEEEEE
Confidence 21 001223322211 1122476 56666443 2478899988775 32232 33 36678889
Q ss_pred E--ecCCEEEEEEecCCeeEEEEE
Q 004766 357 A--VNLNQMIVSYLSDVKYVLQIR 378 (732)
Q Consensus 357 ~--~~~~~l~~~~~~~g~~~l~~~ 378 (732)
+ ++++..++.+.++|. +|+..
T Consensus 273 ~~~s~d~~~La~a~edG~-klw~~ 295 (588)
T 2j04_A 273 LNHEKESTILLMSNKTSY-KVLLE 295 (588)
T ss_dssp ETTCSSCEEEEECSSCEE-EEEES
T ss_pred eeeCCCCCEEEEEcCCCC-EEEee
Confidence 9 886777888887876 66654
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.07 E-value=1.5e-08 Score=105.54 Aligned_cols=240 Identities=10% Similarity=-0.021 Sum_probs=145.1
Q ss_pred EEEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCc----eecccccceeeeeEEEEeCCc-EEEEEEecCCCCCCCC
Q 004766 132 AALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQI----VEADALSWFKFSSIAWTHDSK-GFFYSRYPAPKEGKDM 206 (732)
Q Consensus 132 ~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~----~~~~~~~~~~~~~~~WspDg~-~l~y~~~~~~~~~~~~ 206 (732)
-.+..++|||||++|+.... ...|++||+.+++ .............++|+||++ .|+....+
T Consensus 12 ~~v~~~~~s~~~~~l~~~~~-----d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-------- 78 (342)
T 1yfq_A 12 DYISDIKIIPSKSLLLITSW-----DGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQ-------- 78 (342)
T ss_dssp SCEEEEEEEGGGTEEEEEET-----TSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETT--------
T ss_pred CcEEEEEEcCCCCEEEEEcC-----CCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCC--------
Confidence 45778999999999987642 1479999998876 322222222357899999999 88776533
Q ss_pred CCCCcccCCcccEEEEEEC-CCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCC-------
Q 004766 207 DAGTETDSNLYHEFYYHFL-GTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSA------- 278 (732)
Q Consensus 207 ~~~~~~~~~~~~~v~~~~l-gt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~------- 278 (732)
..|++|++ .++.. ..+....+...+..+.|+| ++.|+....+ ..|.++|+.+
T Consensus 79 -----------g~i~~wd~~~~~~~---~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d-----~~i~iwd~~~~~~~~~~ 138 (342)
T 1yfq_A 79 -----------GEILKVDLIGSPSF---QALTNNEANLGICRICKYG-DDKLIAASWD-----GLIEVIDPRNYGDGVIA 138 (342)
T ss_dssp -----------SCEEEECSSSSSSE---EECBSCCCCSCEEEEEEET-TTEEEEEETT-----SEEEEECHHHHTTBCEE
T ss_pred -----------CeEEEEEeccCCce---EeccccCCCCceEEEEeCC-CCEEEEEcCC-----CeEEEEccccccccccc
Confidence 35889998 66532 2222210334567899999 8888766533 3477888764
Q ss_pred --CCCCcccccccCCCCCcEEeeecccceEEEEEecCCeEEEEeCCCCCCceEEEEeCCC-CCC-ceEeccCCCCCceeE
Q 004766 279 --LPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKE-PND-WFEVIPEAERDVLES 354 (732)
Q Consensus 279 --~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~-~~~-~~~l~~~~~~~~l~~ 354 (732)
+.. ...+..........|++++ ++..+. ...|..+|+.+ +.. ...... .....+..
T Consensus 139 ~~~~~-------------~~~~~~~~~v~~~~~~~~~--l~~~~~----d~~i~i~d~~~~~~~~~~~~~~-~~~~~i~~ 198 (342)
T 1yfq_A 139 VKNLN-------------SNNTKVKNKIFTMDTNSSR--LIVGMN----NSQVQWFRLPLCEDDNGTIEES-GLKYQIRD 198 (342)
T ss_dssp EEESC-------------SSSSSSCCCEEEEEECSSE--EEEEES----TTEEEEEESSCCTTCCCEEEEC-SCSSCEEE
T ss_pred ccCCe-------------eeEEeeCCceEEEEecCCc--EEEEeC----CCeEEEEECCccccccceeeec-CCCCceeE
Confidence 210 0011111111112366554 544333 34688899887 442 222222 22356788
Q ss_pred EEEec-CCEEEEEEecCCeeEEEEEeCCCC------ceeeeccccc---------ceeeEeecccCCcEEEEEEecCCCC
Q 004766 355 ATAVN-LNQMIVSYLSDVKYVLQIRDLKNG------SLLHQLPIEI---------GSVNAISARREDSVVFISFTSFLIP 418 (732)
Q Consensus 355 ~~~~~-~~~l~~~~~~~g~~~l~~~d~~~g------~~~~~l~~~~---------g~v~~~~~s~d~~~l~~~~ss~~~p 418 (732)
+.+++ ++.+++....++ .+.+|+++.+ +....+.... +.+..+.++++++.++... . -
T Consensus 199 i~~~~~~~~~l~~~~~dg--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~---d 272 (342)
T 1yfq_A 199 VALLPKEQEGYACSSIDG--RVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAG-S---D 272 (342)
T ss_dssp EEECSGGGCEEEEEETTS--EEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEE-T---T
T ss_pred EEECCCCCCEEEEEecCC--cEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEec-C---C
Confidence 89987 677777777775 5667776644 3333343322 2677888899988665332 2 3
Q ss_pred ceEEEEECCCCC
Q 004766 419 GIVYQCNLKTET 430 (732)
Q Consensus 419 ~~~y~~d~~~~~ 430 (732)
..++.||+.+++
T Consensus 273 g~i~vwd~~~~~ 284 (342)
T 1yfq_A 273 GIISCWNLQTRK 284 (342)
T ss_dssp SCEEEEETTTTE
T ss_pred ceEEEEcCccHh
Confidence 579999998773
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=99.06 E-value=5.8e-08 Score=103.43 Aligned_cols=251 Identities=8% Similarity=0.002 Sum_probs=147.1
Q ss_pred EEEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCc------ee-cccccceeeeeEEEEeC----C---cEEEEEEe
Q 004766 132 AALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQI------VE-ADALSWFKFSSIAWTHD----S---KGFFYSRY 197 (732)
Q Consensus 132 ~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~------~~-~~~~~~~~~~~~~WspD----g---~~l~y~~~ 197 (732)
..+..++|+| ++|+... .+ ..|++||+.+++ .+ ...........++|+|| | +.|+....
T Consensus 17 ~~i~~~~~~~--~~l~s~~-~d----g~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~ 89 (397)
T 1sq9_A 17 ADIFSVSACN--SFTVSCS-GD----GYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSF 89 (397)
T ss_dssp SCEEEEEECS--SEEEEEE-TT----SEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEET
T ss_pred cCeEEEEecC--CeEEEEc-CC----CEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcC
Confidence 3467889999 6666543 22 489999999887 22 11112223478999999 8 88887653
Q ss_pred cCCCCCCCCCCCCcccCCcccEEEEEECCCCCCCCeE-EEecCCC-----CeeEEEeEEe----cCCcE-EEEEEecCCc
Q 004766 198 PAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDIL-CWKDPEH-----PKYIFSGHVT----EDGQY-LVMCIEENCD 266 (732)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~-v~~~~~~-----~~~~~~~~~S----pDg~~-l~~~~~~~~~ 266 (732)
+ ..|++|++.++...... +...... ...+..+.|+ |+|++ |+....++
T Consensus 90 d-------------------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg-- 148 (397)
T 1sq9_A 90 S-------------------GDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKG-- 148 (397)
T ss_dssp T-------------------SCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTS--
T ss_pred C-------------------CCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCC--
Confidence 3 25788887665431111 2222222 1456789999 99999 66554332
Q ss_pred ceEEEEEEeCCC------CCCCcccccccCCCCCcEEeee--------cccceEEEEEecCCeEEEEeCCCCCCceEEEE
Q 004766 267 PVNKVYYCDLSA------LPEGLEGFKKRDGLLPFVKLID--------GFDAQYEVIANDDTVFTFLTNKDAPKYKIIRV 332 (732)
Q Consensus 267 ~~~~l~~~d~~~------~~~~~~~~~~~~~~~~~~~l~~--------~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~ 332 (732)
.|+++|+.+ +..- . ..+...+.. ........|+|++ .|+. ... ...|..+
T Consensus 149 ---~i~iwd~~~~~~~~~~~~~--~------~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~-~~~---dg~i~i~ 212 (397)
T 1sq9_A 149 ---TTYIWKFHPFADESNSLTL--N------WSPTLELQGTVESPMTPSQFATSVDISERG-LIAT-GFN---NGTVQIS 212 (397)
T ss_dssp ---CEEEEEEESSSSHHHHTTT--C------CCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEE-ECT---TSEEEEE
T ss_pred ---cEEEEeCCcccccccccee--e------ccCcceeeeeeccccCCCCCceEEEECCCc-eEEE-EeC---CCcEEEE
Confidence 366777665 2210 0 000002211 1111223588988 4443 332 3478899
Q ss_pred eCCCCCCceEecc---C-CCCCceeEEEEecCCEEEEEEecC-CeeEEEEEeCCCCceeeeccc-------------ccc
Q 004766 333 DLKEPNDWFEVIP---E-AERDVLESATAVNLNQMIVSYLSD-VKYVLQIRDLKNGSLLHQLPI-------------EIG 394 (732)
Q Consensus 333 d~~~~~~~~~l~~---~-~~~~~l~~~~~~~~~~l~~~~~~~-g~~~l~~~d~~~g~~~~~l~~-------------~~g 394 (732)
|+.++.....+.. + .....+..+.+++++.+++....+ +...|++||+.+++.+..+.. ...
T Consensus 213 d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (397)
T 1sq9_A 213 ELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSS 292 (397)
T ss_dssp ETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSS
T ss_pred ECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCC
Confidence 9987653333333 2 003568889998765555554443 335899999988887667765 556
Q ss_pred eeeEeecccCCcEEEEEEecCCCCceEEEEECCCCC
Q 004766 395 SVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 430 (732)
Q Consensus 395 ~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~~ 430 (732)
.+..+.++++++.++.. + .-..++.||+.+++
T Consensus 293 ~v~~~~~~~~~~~l~~~-~---~dg~i~iwd~~~~~ 324 (397)
T 1sq9_A 293 WVMSLSFNDSGETLCSA-G---WDGKLRFWDVKTKE 324 (397)
T ss_dssp CEEEEEECSSSSEEEEE-E---TTSEEEEEETTTTE
T ss_pred cEEEEEECCCCCEEEEE-e---CCCeEEEEEcCCCc
Confidence 67788899998865533 2 23589999998774
|
| >3c5v_A PME-1, protein phosphatase methylesterase 1; demethylase, PP2A, alternative splicing, hydrolase, phosphoprotein, serine esterase; 2.00A {Homo sapiens} PDB: 3c5w_P | Back alignment and structure |
|---|
Probab=99.06 E-value=1.7e-09 Score=111.90 Aligned_cols=101 Identities=18% Similarity=0.142 Sum_probs=67.9
Q ss_pred CccEEEEEcCCCCccCCCCcChhHHHHHHh-cCcEEEEEcccCCCCCchhHHhcccccCCccHH----HHHHHHHHHHHH
Q 004766 480 SHPCLLYGYGGFNISVTPSFSVSRTILMRH-LGAVFCIANIRGGGEYGEEWHKGGALAKKQNCF----DDFISASEYLIS 554 (732)
Q Consensus 480 ~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~-~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~----~D~~~~~~~l~~ 554 (732)
..|+||++||+.++. ..|.. +...|.+ .+|.|+++|+||.|..... .....++ +|+.+.++.|..
T Consensus 37 ~~p~lvllHG~~~~~--~~w~~-~~~~L~~~~~~~via~Dl~GhG~S~~~-------~~~~~~~~~~a~dl~~~l~~l~~ 106 (316)
T 3c5v_A 37 EGPVLLLLHGGGHSA--LSWAV-FTAAIISRVQCRIVALDLRSHGETKVK-------NPEDLSAETMAKDVGNVVEAMYG 106 (316)
T ss_dssp SSCEEEEECCTTCCG--GGGHH-HHHHHHTTBCCEEEEECCTTSTTCBCS-------CTTCCCHHHHHHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCccc--ccHHH-HHHHHhhcCCeEEEEecCCCCCCCCCC-------CccccCHHHHHHHHHHHHHHHhc
Confidence 458899999986543 23443 4456772 2999999999998865321 0111233 455555555532
Q ss_pred cCCCCCCcEEEEecChhHHHHHHHHhh--CCCeeeEEEEcCC
Q 004766 555 AGYTQSRKLCIEGGSNGGLLVGACINQ--RPDLFGCALAHVG 594 (732)
Q Consensus 555 ~~~~d~~~i~i~G~S~GG~l~~~~~~~--~p~~f~a~v~~~p 594 (732)
+. ++++.++||||||++++.++.+ +|+ ++++|+..+
T Consensus 107 -~~--~~~~~lvGhSmGG~ia~~~A~~~~~p~-v~~lvl~~~ 144 (316)
T 3c5v_A 107 -DL--PPPIMLIGHSMGGAIAVHTASSNLVPS-LLGLCMIDV 144 (316)
T ss_dssp -TC--CCCEEEEEETHHHHHHHHHHHTTCCTT-EEEEEEESC
T ss_pred -cC--CCCeEEEEECHHHHHHHHHHhhccCCC-cceEEEEcc
Confidence 11 2689999999999999999985 587 788877654
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=99.06 E-value=8.4e-08 Score=101.79 Aligned_cols=245 Identities=12% Similarity=0.072 Sum_probs=141.9
Q ss_pred CEEEEeEEECC-CCcEEEEEEeccCCceEEEEEEECCCCceeccccc---ceeeeeEEEEeCCcEEEEEEecCCCCCCCC
Q 004766 131 TAALIKVSVSE-DAKYLAYALSYSGSDWATIKLMRIEDQIVEADALS---WFKFSSIAWTHDSKGFFYSRYPAPKEGKDM 206 (732)
Q Consensus 131 ~~~~~~~~~SP-DG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~~---~~~~~~~~WspDg~~l~y~~~~~~~~~~~~ 206 (732)
...+..+.||| |+++|+... .+ ..|++||+.++........ ......++|+||++.|+....
T Consensus 118 ~~~v~~~~~~~~~~~~l~s~~-~d----~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--------- 183 (383)
T 3ei3_B 118 GDAITGMKFNQFNTNQLFVSS-IR----GATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDS--------- 183 (383)
T ss_dssp TCBEEEEEEETTEEEEEEEEE-TT----TEEEEEETTSCEEEEEECCCCSSCCEEEEEEETTTTEEEEEET---------
T ss_pred CCceeEEEeCCCCCCEEEEEe-CC----CEEEEEECCCCceEEEeccCCCCCCeEEEEECCCCCEEEEECC---------
Confidence 34578899999 667666543 22 3799999987553221111 122478999999998887653
Q ss_pred CCCCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccc
Q 004766 207 DAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGF 286 (732)
Q Consensus 207 ~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~ 286 (732)
...|++|++. + +.+..+.. +...+..++|+|+|++++++.... ..|.++|+.+....
T Consensus 184 ----------d~~i~i~d~~-~--~~~~~~~~--h~~~v~~~~~~~~~~~~l~s~~~d----~~i~iwd~~~~~~~---- 240 (383)
T 3ei3_B 184 ----------TGRLLLLGLD-G--HEIFKEKL--HKAKVTHAEFNPRCDWLMATSSVD----ATVKLWDLRNIKDK---- 240 (383)
T ss_dssp ----------TSEEEEEETT-S--CEEEEEEC--SSSCEEEEEECSSCTTEEEEEETT----SEEEEEEGGGCCST----
T ss_pred ----------CCCEEEEECC-C--CEEEEecc--CCCcEEEEEECCCCCCEEEEEeCC----CEEEEEeCCCCCcc----
Confidence 2368999983 2 22222322 334567899999999444444322 34888898763210
Q ss_pred cccCCCCCcEEeeecccce-EEEEEe-cCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCC-----CCceeEEEEec
Q 004766 287 KKRDGLLPFVKLIDGFDAQ-YEVIAN-DDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAE-----RDVLESATAVN 359 (732)
Q Consensus 287 ~~~~~~~~~~~l~~~~~~~-~~~~s~-dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~-----~~~l~~~~~~~ 359 (732)
......+ ...... ...|+| +|+.|+..+. ...|..+|+.++.....+..+.. ...+. ..|.+
T Consensus 241 -----~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p 309 (383)
T 3ei3_B 241 -----NSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQ----RNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIK-ATWHP 309 (383)
T ss_dssp -----TCEEEEE-ECSSCEEEEEECTTTSCEEEEEES----SSEEEEEETTBTTSCSEEEECCBCCCTTSCCCC-CEECS
T ss_pred -----cceEEEe-cCCCceEEEEEcCCCCCEEEEEcC----CCcEEEEECCCCccccccccccccccccccceE-EeccC
Confidence 1112222 222222 235899 8888776544 34788899887653344432220 01122 23443
Q ss_pred CCE-EEEEEecC------CeeEEEEEeCCCCceeeecccc--cceeeEeecccCCcEEEEEEecCCCCceEEEEECCC
Q 004766 360 LNQ-MIVSYLSD------VKYVLQIRDLKNGSLLHQLPIE--IGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKT 428 (732)
Q Consensus 360 ~~~-l~~~~~~~------g~~~l~~~d~~~g~~~~~l~~~--~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~ 428 (732)
+.. +.+....+ ....|++||+.+++.+..+..+ .+.+..+.+++++..++.. + -..+..||+.+
T Consensus 310 ~~~~~~~~~s~dg~~s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~-s----d~~i~iw~~~~ 382 (383)
T 3ei3_B 310 MYDLIVAGRYPDDQLLLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASG-M----GFNILIWNRED 382 (383)
T ss_dssp SSSEEEEECBCCTTTCTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEE-E----TTEEEEEECC-
T ss_pred CCCceEEEecCCcccccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEe-c----CCcEEEEecCC
Confidence 222 22222211 2257999999888877777653 4556666889999866433 3 26788888753
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.05 E-value=9.6e-08 Score=97.69 Aligned_cols=232 Identities=11% Similarity=0.068 Sum_probs=142.7
Q ss_pred EeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccC
Q 004766 135 IKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDS 214 (732)
Q Consensus 135 ~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~ 214 (732)
.++.|+|+++.|.++-. .+ ..|+.+|.++++........ ....++|+|||+ |++..
T Consensus 16 Egp~w~~~~~~l~~~d~-~~---~~i~~~d~~~~~~~~~~~~~-~~~~i~~~~dG~-l~v~~------------------ 71 (297)
T 3g4e_A 16 ESPVWEEVSNSLLFVDI-PA---KKVCRWDSFTKQVQRVTMDA-PVSSVALRQSGG-YVATI------------------ 71 (297)
T ss_dssp EEEEEETTTTEEEEEET-TT---TEEEEEETTTCCEEEEECSS-CEEEEEEBTTSS-EEEEE------------------
T ss_pred cCCeEECCCCEEEEEEC-CC---CEEEEEECCCCcEEEEeCCC-ceEEEEECCCCC-EEEEE------------------
Confidence 48999998888877642 22 37999999988753222222 347899999998 55442
Q ss_pred CcccEEEEEECCCCCCCCeEEEecCCC--CeeEEEeEEecCCcEEEEEEecCC-------cceEEEEEEeCCCCCCCccc
Q 004766 215 NLYHEFYYHFLGTKQSEDILCWKDPEH--PKYIFSGHVTEDGQYLVMCIEENC-------DPVNKVYYCDLSALPEGLEG 285 (732)
Q Consensus 215 ~~~~~v~~~~lgt~~~~~~~v~~~~~~--~~~~~~~~~SpDg~~l~~~~~~~~-------~~~~~l~~~d~~~~~~~~~~ 285 (732)
...|++++..++..+ .+...... ......+.++|||+. ++...... .....||.++..+.
T Consensus 72 --~~~l~~~d~~~g~~~--~~~~~~~~~~~~~~~di~~d~dG~l-~~~~~~~~~~~~~~~~~~~~l~~~d~~g~------ 140 (297)
T 3g4e_A 72 --GTKFCALNWKEQSAV--VLATVDNDKKNNRFNDGKVDPAGRY-FAGTMAEETAPAVLERHQGALYSLFPDHH------ 140 (297)
T ss_dssp --TTEEEEEETTTTEEE--EEEECCTTCSSEEEEEEEECTTSCE-EEEEEECCSBTTBCCTTCEEEEEECTTSC------
T ss_pred --CCeEEEEECCCCcEE--EEEecCCCCCCCCCCCEEECCCCCE-EEecCCcccccccccCCCcEEEEEECCCC------
Confidence 125888888765322 23222111 123457889999994 44432211 12467898886541
Q ss_pred ccccCCCCCcEEeeecccc-eEEEEEecCCeEEEEeCCCCCCceEEEEeC--CCCC--CceEeccC-CCCCceeEEEEec
Q 004766 286 FKKRDGLLPFVKLIDGFDA-QYEVIANDDTVFTFLTNKDAPKYKIIRVDL--KEPN--DWFEVIPE-AERDVLESATAVN 359 (732)
Q Consensus 286 ~~~~~~~~~~~~l~~~~~~-~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~--~~~~--~~~~l~~~-~~~~~l~~~~~~~ 359 (732)
...+...... .-..|+|||+.||+.... ..+|+++++ +++. ..+.+..- .......++.+.+
T Consensus 141 ---------~~~~~~~~~~pngi~~spdg~~lyv~~~~---~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~ 208 (297)
T 3g4e_A 141 ---------VKKYFDQVDISNGLDWSLDHKIFYYIDSL---SYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDA 208 (297)
T ss_dssp ---------EEEEEEEESBEEEEEECTTSCEEEEEEGG---GTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBT
T ss_pred ---------EEEEeeccccccceEEcCCCCEEEEecCC---CCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECC
Confidence 2222222221 123589999988876543 346888876 4443 11222211 1123456778877
Q ss_pred CCEEEEEEecCCeeEEEEEeCCCCceeeecccccceeeEeecc-cCCcEEEEEEecC
Q 004766 360 LNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISAR-REDSVVFISFTSF 415 (732)
Q Consensus 360 ~~~l~~~~~~~g~~~l~~~d~~~g~~~~~l~~~~g~v~~~~~s-~d~~~l~~~~ss~ 415 (732)
++.+++....+ ..|+++|+++|+.+..+..|...+..+.+. +|+++|+++..+.
T Consensus 209 ~G~lwva~~~~--~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~~~~ 263 (297)
T 3g4e_A 209 EGKLWVACYNG--GRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMYVTCARD 263 (297)
T ss_dssp TSCEEEEEETT--TEEEEECTTTCCEEEEEECSSSBEEEEEEESGGGCEEEEEEBCT
T ss_pred CCCEEEEEcCC--CEEEEEcCCCceEEEEEECCCCCceEEEEeCCCCCEEEEEcCCc
Confidence 67788776655 469999998898878888775556677776 7888999887654
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.05 E-value=3.5e-08 Score=102.91 Aligned_cols=223 Identities=10% Similarity=0.004 Sum_probs=125.1
Q ss_pred EeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceeccc-cc------ceeeeeEEEEeCCcEEEEEEecCCCCCCCCC
Q 004766 135 IKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADA-LS------WFKFSSIAWTHDSKGFFYSRYPAPKEGKDMD 207 (732)
Q Consensus 135 ~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~-~~------~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~ 207 (732)
..+.|||||++++++.... .+|+++|+++++.+... .. ......++|+|||+.|++...+.....
T Consensus 46 ~~~~~s~dg~~~~v~~~~~----~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~---- 117 (349)
T 1jmx_B 46 GTAMMAPDNRTAYVLNNHY----GDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLN---- 117 (349)
T ss_dssp CEEEECTTSSEEEEEETTT----TEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECS----
T ss_pred ceeEECCCCCEEEEEeCCC----CcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccc----
Confidence 4788999999877665322 37999999998854321 11 111367899999999998864310000
Q ss_pred CCCcccCCcccEEEEEECCCCCCC-CeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccc
Q 004766 208 AGTETDSNLYHEFYYHFLGTKQSE-DILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGF 286 (732)
Q Consensus 208 ~~~~~~~~~~~~v~~~~lgt~~~~-~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~ 286 (732)
.. .......|+++++.++... .+..+..+. ....++|||||+ +++. . .+++++|+.++... ..+
T Consensus 118 -~~--~~~~~~~i~~~d~~~~~~~~~~~~~~~~~---~~~~~~~s~dg~-l~~~--~-----~~i~~~d~~~~~~~-~~~ 182 (349)
T 1jmx_B 118 -DH--YVVKPPRLEVFSTADGLEAKPVRTFPMPR---QVYLMRAADDGS-LYVA--G-----PDIYKMDVKTGKYT-VAL 182 (349)
T ss_dssp -SC--EEECCCEEEEEEGGGGGGBCCSEEEECCS---SCCCEEECTTSC-EEEE--S-----SSEEEECTTTCCEE-EEE
T ss_pred -cc--cccCCCeEEEEECCCccccceeeeccCCC---cccceeECCCCc-EEEc--c-----CcEEEEeCCCCcee-ccc
Confidence 00 0011357999998764322 122333322 234678999999 5542 1 12888888764311 000
Q ss_pred cccC------------------CCCCc--E--Eeeec-----------------------------------ccceEEEE
Q 004766 287 KKRD------------------GLLPF--V--KLIDG-----------------------------------FDAQYEVI 309 (732)
Q Consensus 287 ~~~~------------------~~~~~--~--~l~~~-----------------------------------~~~~~~~~ 309 (732)
.... ..... . .+... .......+
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (349)
T 1jmx_B 183 PLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLR 262 (349)
T ss_dssp CSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEE
T ss_pred cccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEe
Confidence 0000 00000 0 00000 00001136
Q ss_pred Ee-cCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecCC-EEEEEEecCCeeEEEEEeCCCCceee
Q 004766 310 AN-DDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLN-QMIVSYLSDVKYVLQIRDLKNGSLLH 387 (732)
Q Consensus 310 s~-dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~-~l~~~~~~~g~~~l~~~d~~~g~~~~ 387 (732)
+| ||+.+|+. ..+|+++|+++++ ....++.. .....+.+++++ .|++ ...+ ..|.+||+++++.+.
T Consensus 263 sp~dg~~l~~~------~~~v~~~d~~~~~-~~~~~~~~--~~~~~~~~s~dg~~l~~-~~~~--~~v~v~d~~~~~~~~ 330 (349)
T 1jmx_B 263 SPKDPNQIYGV------LNRLAKYDLKQRK-LIKAANLD--HTYYCVAFDKKGDKLYL-GGTF--NDLAVFNPDTLEKVK 330 (349)
T ss_dssp CSSCTTEEEEE------ESEEEEEETTTTE-EEEEEECS--SCCCEEEECSSSSCEEE-ESBS--SEEEEEETTTTEEEE
T ss_pred cCCCCCEEEEE------cCeEEEEECccCe-EEEEEcCC--CCccceEECCCCCEEEE-ecCC--CeEEEEeccccceee
Confidence 68 88888765 3479999998876 22233322 235678888754 4555 4333 689999998888777
Q ss_pred ecccc
Q 004766 388 QLPIE 392 (732)
Q Consensus 388 ~l~~~ 392 (732)
.+..+
T Consensus 331 ~~~~~ 335 (349)
T 1jmx_B 331 NIKLP 335 (349)
T ss_dssp EEECS
T ss_pred eeecC
Confidence 77665
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.05 E-value=2e-08 Score=115.94 Aligned_cols=239 Identities=11% Similarity=0.089 Sum_probs=143.2
Q ss_pred CEEEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecccc-cceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCC
Q 004766 131 TAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADAL-SWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAG 209 (732)
Q Consensus 131 ~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~-~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~ 209 (732)
...+..+.|||||++|+-.. ...+|+|||+.++..+.... .......++|+||++.|+..+.+.
T Consensus 430 ~~~v~~v~~s~~g~~l~sgs-----~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~---------- 494 (694)
T 3dm0_A 430 SHFVEDVVLSSDGQFALSGS-----WDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDR---------- 494 (694)
T ss_dssp SSCEEEEEECTTSSEEEEEE-----TTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTS----------
T ss_pred CCcEEEEEECCCCCEEEEEe-----CCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCC----------
Confidence 34577899999999988553 22489999999987543221 222357899999999988775433
Q ss_pred CcccCCcccEEEEEECCCCCCCCeEEEec-CCCCeeEEEeEEecCCc--EEEEEEecCCcceEEEEEEeCCCCCCCcccc
Q 004766 210 TETDSNLYHEFYYHFLGTKQSEDILCWKD-PEHPKYIFSGHVTEDGQ--YLVMCIEENCDPVNKVYYCDLSALPEGLEGF 286 (732)
Q Consensus 210 ~~~~~~~~~~v~~~~lgt~~~~~~~v~~~-~~~~~~~~~~~~SpDg~--~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~ 286 (732)
.|.+|++.+.. ...+... ..+...+..+.|+|++. .|+..+.+ ..|.++|+.+..
T Consensus 495 ---------~i~iwd~~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d-----~~v~vwd~~~~~------ 552 (694)
T 3dm0_A 495 ---------TIKLWNTLGEC--KYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWD-----KTVKVWNLSNCK------ 552 (694)
T ss_dssp ---------CEEEECTTSCE--EEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETT-----SCEEEEETTTCC------
T ss_pred ---------EEEEEECCCCc--ceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCC-----CeEEEEECCCCc------
Confidence 57777764321 1111111 12334567899999984 44433322 237788987632
Q ss_pred cccCCCCCcEEeeecccce-EEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecCCEEEE
Q 004766 287 KKRDGLLPFVKLIDGFDAQ-YEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIV 365 (732)
Q Consensus 287 ~~~~~~~~~~~l~~~~~~~-~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~~l~~ 365 (732)
....+....... ...|+|+|+.|+..+. ...|..+|+.++.....+ . ....+..+.+++++.+++
T Consensus 553 -------~~~~~~~h~~~v~~v~~spdg~~l~sg~~----Dg~i~iwd~~~~~~~~~~-~--~~~~v~~~~~sp~~~~l~ 618 (694)
T 3dm0_A 553 -------LRSTLAGHTGYVSTVAVSPDGSLCASGGK----DGVVLLWDLAEGKKLYSL-E--ANSVIHALCFSPNRYWLC 618 (694)
T ss_dssp -------EEEEECCCSSCEEEEEECTTSSEEEEEET----TSBCEEEETTTTEEEECC-B--CSSCEEEEEECSSSSEEE
T ss_pred -------EEEEEcCCCCCEEEEEEeCCCCEEEEEeC----CCeEEEEECCCCceEEEe-c--CCCcEEEEEEcCCCcEEE
Confidence 122222222211 2258999987765443 346888898876522222 2 235688889998666666
Q ss_pred EEecCCeeEEEEEeCCCCceeeeccccc-------------------ceeeEeecccCCcEEEEEEecCCCCceEEEEEC
Q 004766 366 SYLSDVKYVLQIRDLKNGSLLHQLPIEI-------------------GSVNAISARREDSVVFISFTSFLIPGIVYQCNL 426 (732)
Q Consensus 366 ~~~~~g~~~l~~~d~~~g~~~~~l~~~~-------------------g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~ 426 (732)
....+ .|++||+.+++.+..+.... ..+.++.+++|++.|+ +.+. -..+..+++
T Consensus 619 ~~~~~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~-sgs~---Dg~i~iW~i 691 (694)
T 3dm0_A 619 AATEH---GIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLF-SGYT---DGVIRVWGI 691 (694)
T ss_dssp EEETT---EEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEE-EEET---TSEEEEEEC
T ss_pred EEcCC---CEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEE-EEcC---CCeEEEEec
Confidence 66554 49999998777655443210 1245677889988665 3332 246777765
Q ss_pred C
Q 004766 427 K 427 (732)
Q Consensus 427 ~ 427 (732)
.
T Consensus 692 ~ 692 (694)
T 3dm0_A 692 G 692 (694)
T ss_dssp -
T ss_pred c
Confidence 3
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.05 E-value=7e-08 Score=100.92 Aligned_cols=210 Identities=14% Similarity=0.027 Sum_probs=109.6
Q ss_pred EeEEECCCCcEEEEEEeccCCceEEEEEEECC-CCce--eccc-ccc---------eeeeeEEEEeCCcEEEEEEecCCC
Q 004766 135 IKVSVSEDAKYLAYALSYSGSDWATIKLMRIE-DQIV--EADA-LSW---------FKFSSIAWTHDSKGFFYSRYPAPK 201 (732)
Q Consensus 135 ~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~-~g~~--~~~~-~~~---------~~~~~~~WspDg~~l~y~~~~~~~ 201 (732)
..++|||||++|+++...+ ..|.+||+. +|.. +... ..+ .....++|+|||+ ++++..
T Consensus 89 ~~~a~spdg~~l~~~~~~~----~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~---- 159 (347)
T 3hfq_A 89 AYVAVDEARQLVYSANYHK----GTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDL---- 159 (347)
T ss_dssp SEEEEETTTTEEEEEETTT----TEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEET----
T ss_pred EEEEECCCCCEEEEEeCCC----CEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeC----
Confidence 3688999999987765322 268888885 4432 1111 000 0134689999999 655432
Q ss_pred CCCCCCCCCcccCCcccEEEEEECCC-CCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCC
Q 004766 202 EGKDMDAGTETDSNLYHEFYYHFLGT-KQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALP 280 (732)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~v~~~~lgt-~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~ 280 (732)
....|+++++.. +.......+..... .....++|||||++|++...... .-.+|.++..++.
T Consensus 160 --------------~~~~v~~~~~~~~g~~~~~~~~~~~~g-~~p~~~~~spdg~~l~v~~~~~~--~v~v~~~~~~~g~ 222 (347)
T 3hfq_A 160 --------------GSDKVYVYNVSDAGQLSEQSVLTMEAG-FGPRHLVFSPDGQYAFLAGELSS--QIASLKYDTQTGA 222 (347)
T ss_dssp --------------TTTEEEEEEECTTSCEEEEEEEECCTT-CCEEEEEECTTSSEEEEEETTTT--EEEEEEEETTTTE
T ss_pred --------------CCCEEEEEEECCCCcEEEeeeEEcCCC-CCCceEEECCCCCEEEEEeCCCC--EEEEEEecCCCCc
Confidence 223688888873 22111111122111 12346899999999877653322 3334444432321
Q ss_pred CCcccccccCCCCCcEEeeec-------ccceEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEe--ccCCCCCc
Q 004766 281 EGLEGFKKRDGLLPFVKLIDG-------FDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEV--IPEAERDV 351 (732)
Q Consensus 281 ~~~~~~~~~~~~~~~~~l~~~-------~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l--~~~~~~~~ 351 (732)
. .....+... .......|+|||+.||+.... ...|.+++++.....+.+ ++.. ...
T Consensus 223 ~-----------~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~---~~~v~v~~~~~~g~~~~~~~~~~~-~~~ 287 (347)
T 3hfq_A 223 F-----------TQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRG---YNTLAVFAVTADGHLTLIQQISTE-GDF 287 (347)
T ss_dssp E-----------EEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEET---TTEEEEEEECGGGCEEEEEEEECS-SSC
T ss_pred e-----------EEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCC---CCEEEEEEECCCCcEEEeEEEecC-CCC
Confidence 0 001111110 001123589999988875443 235666666522112222 2221 234
Q ss_pred eeEEEEecCCE-EEEEEecCCeeEEEEEeCCCCce
Q 004766 352 LESATAVNLNQ-MIVSYLSDVKYVLQIRDLKNGSL 385 (732)
Q Consensus 352 l~~~~~~~~~~-l~~~~~~~g~~~l~~~d~~~g~~ 385 (732)
...+.+++++. |++....++.-.++.+|.++|+.
T Consensus 288 ~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l 322 (347)
T 3hfq_A 288 PRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKL 322 (347)
T ss_dssp CCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCE
T ss_pred cCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeE
Confidence 56788988654 66555555544555557777765
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.04 E-value=1.2e-08 Score=105.76 Aligned_cols=222 Identities=12% Similarity=-0.029 Sum_probs=130.8
Q ss_pred EEEEEECCCCceecccc-cce--eeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCCcccEEEEEECCCCCCCCeEE
Q 004766 159 TIKLMRIEDQIVEADAL-SWF--KFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILC 235 (732)
Q Consensus 159 ~i~v~dl~~g~~~~~~~-~~~--~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v 235 (732)
+|+++|+.+++.+.... ... ....++|+|||+.++++.. ....|+++++.++... ..
T Consensus 12 ~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~------------------~~~~v~~~d~~~~~~~--~~ 71 (337)
T 1pby_B 12 KLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVN------------------KSESLVKIDLVTGETL--GR 71 (337)
T ss_dssp EEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEET------------------TTTEEEEEETTTCCEE--EE
T ss_pred eEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeC------------------CCCeEEEEECCCCCeE--ee
Confidence 79999999998654222 221 2468999999999888752 2346899998776432 11
Q ss_pred EecCCCC---eeEEEeEEecCCcEEEEEEecC-----Cc--ceEEEEEEeCCCCCCCcccccccCCCCCcEEeeecccce
Q 004766 236 WKDPEHP---KYIFSGHVTEDGQYLVMCIEEN-----CD--PVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQ 305 (732)
Q Consensus 236 ~~~~~~~---~~~~~~~~SpDg~~l~~~~~~~-----~~--~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 305 (732)
+...... .....++|||||++|++..... .. ....|+++|++++. ....+..+....
T Consensus 72 ~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~-------------~~~~~~~~~~~~ 138 (337)
T 1pby_B 72 IDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLS-------------RRKAFEAPRQIT 138 (337)
T ss_dssp EECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTE-------------EEEEEECCSSCC
T ss_pred EEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCc-------------EEEEEeCCCCcc
Confidence 2211100 0123678999999988775220 00 13679999987642 112222222222
Q ss_pred EEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCC-CCceeEEEEecCC-EEEEEEecCCe-----------
Q 004766 306 YEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAE-RDVLESATAVNLN-QMIVSYLSDVK----------- 372 (732)
Q Consensus 306 ~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~-~~~l~~~~~~~~~-~l~~~~~~~g~----------- 372 (732)
...|+|||+.|++. + ..|+.+|+++++. ...++... ... +.+++++ .+++....++.
T Consensus 139 ~~~~s~dg~~l~~~-~-----~~i~~~d~~~~~~-~~~~~~~~~~~~---~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~ 208 (337)
T 1pby_B 139 MLAWARDGSKLYGL-G-----RDLHVMDPEAGTL-VEDKPIQSWEAE---TYAQPDVLAVWNQHESSGVMATPFYTARKD 208 (337)
T ss_dssp CEEECTTSSCEEEE-S-----SSEEEEETTTTEE-EEEECSTTTTTT---TBCCCBCCCCCCCCTTTTEEEEEEEEEBTT
T ss_pred eeEECCCCCEEEEe-C-----CeEEEEECCCCcE-eeeeeccccCCC---ceeCCCccEEeeeccCCCceeeeeeccccc
Confidence 23589999988876 1 3599999987752 22222221 111 1333332 23332222111
Q ss_pred ----------eEEEEEeCCCCceeeecccc--cceeeEeecccCCcEEEEEEecCCCCceEEEEECCCCC
Q 004766 373 ----------YVLQIRDLKNGSLLHQLPIE--IGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 430 (732)
Q Consensus 373 ----------~~l~~~d~~~g~~~~~l~~~--~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~~ 430 (732)
..|+++|+.+++.. .+.+. ...+..+.+++|++.+++. -..++.+|+.+++
T Consensus 209 ~~~~~~~~~~~~v~~~d~~~~~~~-~~~~~~~~~~~~~~~~s~dg~~l~~~------~~~v~~~d~~~~~ 271 (337)
T 1pby_B 209 IDPADPTAYRTGLLTMDLETGEMA-MREVRIMDVFYFSTAVNPAKTRAFGA------YNVLESFDLEKNA 271 (337)
T ss_dssp SCTTSGGGEEEEEEEEETTTCCEE-EEEEEECSSCEEEEEECTTSSEEEEE------ESEEEEEETTTTE
T ss_pred cccccccccccceEEEeCCCCCce-EeecCCCCCceeeEEECCCCCEEEEe------CCeEEEEECCCCc
Confidence 16899999877763 44433 2345567889999988766 2689999998874
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=99.04 E-value=5.9e-09 Score=113.16 Aligned_cols=248 Identities=7% Similarity=-0.067 Sum_probs=140.4
Q ss_pred EEEeEEECC-CCcEEEEEEeccCCceEEEEEEECCCCcee---cccccceeeeeEEEEe-CCcEEEEEEecCCCCCCCCC
Q 004766 133 ALIKVSVSE-DAKYLAYALSYSGSDWATIKLMRIEDQIVE---ADALSWFKFSSIAWTH-DSKGFFYSRYPAPKEGKDMD 207 (732)
Q Consensus 133 ~~~~~~~SP-DG~~la~~~~~~G~e~~~i~v~dl~~g~~~---~~~~~~~~~~~~~Wsp-Dg~~l~y~~~~~~~~~~~~~ 207 (732)
.+..++||| ++++||... .+ .+|+|||+.+++.. ........+..++|+| |++.|+..+.
T Consensus 121 ~V~~l~~~P~~~~~lasGs-~d----g~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~---------- 185 (435)
T 4e54_B 121 RATSLAWHPTHPSTVAVGS-KG----GDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSM---------- 185 (435)
T ss_dssp CEEEEEECSSCTTCEEEEE-TT----SCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECS----------
T ss_pred CEEEEEEeCCCCCEEEEEe-CC----CEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeC----------
Confidence 367899999 566777543 22 47999999887632 1111222357899998 6777665532
Q ss_pred CCCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCccccc
Q 004766 208 AGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFK 287 (732)
Q Consensus 208 ~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~ 287 (732)
...|.+|++.+... ..+............++++|||++|+....+ ..|.++|+.+..
T Consensus 186 ---------D~~v~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d-----g~i~~wd~~~~~------- 242 (435)
T 4e54_B 186 ---------EGTTRLQDFKGNIL--RVFASSDTINIWFCSLDVSASSRMVVTGDNV-----GNVILLNMDGKE------- 242 (435)
T ss_dssp ---------SSCEEEEETTSCEE--EEEECCSSCSCCCCCEEEETTTTEEEEECSS-----SBEEEEESSSCB-------
T ss_pred ---------CCEEEEeeccCCce--eEEeccCCCCccEEEEEECCCCCEEEEEeCC-----CcEeeeccCcce-------
Confidence 23588889865421 1222222222344578999999998765433 337888987632
Q ss_pred ccCCCCCcEEeeecccceE-EEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEecc-CCCCCceeEEEEecCCEEEE
Q 004766 288 KRDGLLPFVKLIDGFDAQY-EVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIP-EAERDVLESATAVNLNQMIV 365 (732)
Q Consensus 288 ~~~~~~~~~~l~~~~~~~~-~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~-~~~~~~l~~~~~~~~~~l~~ 365 (732)
...+........ ..|+|+++.+++....+ ..|..+|+.+......+.. ......+..+.+++++..++
T Consensus 243 -------~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d---~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~ 312 (435)
T 4e54_B 243 -------LWNLRMHKKKVTHVALNPCCDWFLATASVD---QTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLL 312 (435)
T ss_dssp -------CCCSBCCSSCEEEEEECTTCSSEEEEEETT---SBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEE
T ss_pred -------eEEEecccceEEeeeecCCCceEEEEecCc---ceeeEEecccccccceEEEeeeccccccceeECCCCCeeE
Confidence 111111111111 24888888766555433 3466778876542122211 11125677888888777777
Q ss_pred EEecCCeeEEEEEeCCCCceeeecccccc------eeeEeecccCCcEEEEEEecC--------CCCceEEEEECCCCC
Q 004766 366 SYLSDVKYVLQIRDLKNGSLLHQLPIEIG------SVNAISARREDSVVFISFTSF--------LIPGIVYQCNLKTET 430 (732)
Q Consensus 366 ~~~~~g~~~l~~~d~~~g~~~~~l~~~~g------~v~~~~~s~d~~~l~~~~ss~--------~~p~~~y~~d~~~~~ 430 (732)
+...++ .|++||+.+++....+..... ......+++++..+.+..+.. .....+..+|..+++
T Consensus 313 s~~~D~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~ 389 (435)
T 4e54_B 313 TTDQKS--EIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGK 389 (435)
T ss_dssp EEESSS--CEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCC
T ss_pred EEcCCC--EEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCc
Confidence 777774 688999987765433322110 111223445555554433211 122457788887775
|
| >3g02_A Epoxide hydrolase; alpha/beta hydrolase fold, enantioselective, mutant, directed evolution; 1.50A {Aspergillus niger} SCOP: c.69.1.11 PDB: 1qo7_A 3g0i_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=5.8e-09 Score=111.39 Aligned_cols=120 Identities=14% Similarity=0.028 Sum_probs=85.0
Q ss_pred CCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHh------cCcEEEEEcccCCCCCchhHHhcc
Q 004766 460 DGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRH------LGAVFCIANIRGGGEYGEEWHKGG 533 (732)
Q Consensus 460 dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~------~G~~v~~~~~rG~g~~g~~~~~~~ 533 (732)
+| .+|++..+.++. +..|.||++||.+++.. .|...+ ..|.+ .||.|+++|.||.|.....
T Consensus 93 ~g-~~i~~~~~~~~~----~~~~pllllHG~~~s~~--~~~~~~-~~L~~~~~~~~~gf~vv~~DlpG~G~S~~~----- 159 (408)
T 3g02_A 93 EG-LTIHFAALFSER----EDAVPIALLHGWPGSFV--EFYPIL-QLFREEYTPETLPFHLVVPSLPGYTFSSGP----- 159 (408)
T ss_dssp TT-EEEEEEEECCSC----TTCEEEEEECCSSCCGG--GGHHHH-HHHHHHCCTTTCCEEEEEECCTTSTTSCCS-----
T ss_pred CC-EEEEEEEecCCC----CCCCeEEEECCCCCcHH--HHHHHH-HHHhcccccccCceEEEEECCCCCCCCCCC-----
Confidence 89 999988776543 34678999999987643 344433 44554 4999999999998854321
Q ss_pred cccCCccHHHHHHHHHHHHHHcCCCCCC-cEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCc
Q 004766 534 ALAKKQNCFDDFISASEYLISAGYTQSR-KLCIEGGSNGGLLVGACINQRPDLFGCALAHVGV 595 (732)
Q Consensus 534 ~~~~~~~~~~D~~~~~~~l~~~~~~d~~-~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~ 595 (732)
......+++++.+.+..|++. ...+ ++.++|+|+||+++..++.++|++.+..+...++
T Consensus 160 -~~~~~~~~~~~a~~~~~l~~~--lg~~~~~~lvG~S~Gg~ia~~~A~~~p~~~~~~l~~~~~ 219 (408)
T 3g02_A 160 -PLDKDFGLMDNARVVDQLMKD--LGFGSGYIIQGGDIGSFVGRLLGVGFDACKAVHLNFCNM 219 (408)
T ss_dssp -CSSSCCCHHHHHHHHHHHHHH--TTCTTCEEEEECTHHHHHHHHHHHHCTTEEEEEESCCCC
T ss_pred -CCCCCCCHHHHHHHHHHHHHH--hCCCCCEEEeCCCchHHHHHHHHHhCCCceEEEEeCCCC
Confidence 111234567777777666654 2234 8999999999999999999999877777665443
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=99.03 E-value=1.4e-07 Score=96.43 Aligned_cols=229 Identities=12% Similarity=-0.001 Sum_probs=131.8
Q ss_pred EEEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCc--eec-ccccceeeeeEEEEeC--CcEEEEEEecCCCCCCCC
Q 004766 132 AALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQI--VEA-DALSWFKFSSIAWTHD--SKGFFYSRYPAPKEGKDM 206 (732)
Q Consensus 132 ~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~--~~~-~~~~~~~~~~~~WspD--g~~l~y~~~~~~~~~~~~ 206 (732)
..+..++|||||++||-.. ...+|+|||++++. .+. ..........++|+|+ |+.|+....+
T Consensus 10 ~~V~~~~~s~~g~~las~s-----~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D-------- 76 (297)
T 2pm7_B 10 EMIHDAVMDYYGKRMATCS-----SDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD-------- 76 (297)
T ss_dssp SCEEEEEECTTSSEEEEEE-----TTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETT--------
T ss_pred CceEEEEECCCCCEEEEEe-----CCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCC--------
Confidence 3467899999999998653 22479999997542 221 1111123478999874 7777766533
Q ss_pred CCCCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecC--CcEEEEEEecCCcceEEEEEEeCCCCCCCcc
Q 004766 207 DAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTED--GQYLVMCIEENCDPVNKVYYCDLSALPEGLE 284 (732)
Q Consensus 207 ~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpD--g~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~ 284 (732)
..|.+|++.++....+..+.. +...+..++|+|+ |++|+..+.+ ..+.++|+.++..
T Consensus 77 -----------~~v~iWd~~~~~~~~~~~~~~--h~~~v~~v~~~p~~~g~~l~s~s~d-----~~v~~wd~~~~~~--- 135 (297)
T 2pm7_B 77 -----------GKVMIWKEENGRWSQIAVHAV--HSASVNSVQWAPHEYGPMLLVASSD-----GKVSVVEFKENGT--- 135 (297)
T ss_dssp -----------TEEEEEEBSSSCBCCCEEECC--CSSCEEEEEECCGGGCSEEEEEETT-----SEEEEEEBCSSSC---
T ss_pred -----------CEEEEEEcCCCceEEEEEeec--CCCceeEEEeCcCCCCcEEEEEECC-----CcEEEEEecCCCc---
Confidence 368899987654333333322 2335678999998 8887765533 3477778765310
Q ss_pred cccccCCCCCcEEeeecccce-EEEEEec-------------CCeEEEEeCCCCCCceEEEEeCCCCCC----ceEeccC
Q 004766 285 GFKKRDGLLPFVKLIDGFDAQ-YEVIAND-------------DTVFTFLTNKDAPKYKIIRVDLKEPND----WFEVIPE 346 (732)
Q Consensus 285 ~~~~~~~~~~~~~l~~~~~~~-~~~~s~d-------------g~~l~~~s~~~~~~~~l~~~d~~~~~~----~~~l~~~ 346 (732)
.....+....... ...|+|+ ++.|+. ...+ ..|..+|+.++.. ...+..+
T Consensus 136 --------~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~s-gs~D---~~v~lwd~~~~~~~~~~~~~l~~H 203 (297)
T 2pm7_B 136 --------TSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVT-GGAD---NLVKIWKYNSDAQTYVLESTLEGH 203 (297)
T ss_dssp --------BCCEEEECCSSCEEEEEECCCC------------CCEEEE-EETT---SCEEEEEEETTTTEEEEEEEECCC
T ss_pred --------eeeeeeecccCccceEeecCCcccccccCCCCCCcceEEE-EcCC---CcEEEEEEcCCCceEEEEEEecCC
Confidence 0011121111111 1247775 334443 3322 2466666655431 1233334
Q ss_pred CCCCceeEEEEecC---CEEEEEEecCCeeEEEEEeCCCCc--e-eeecc--cccceeeEeecccCCcEEEE
Q 004766 347 AERDVLESATAVNL---NQMIVSYLSDVKYVLQIRDLKNGS--L-LHQLP--IEIGSVNAISARREDSVVFI 410 (732)
Q Consensus 347 ~~~~~l~~~~~~~~---~~l~~~~~~~g~~~l~~~d~~~g~--~-~~~l~--~~~g~v~~~~~s~d~~~l~~ 410 (732)
. ..+..+.|+++ +.++++...|+ .|.+||+.++. . ...+. .....+..++++++++.|+.
T Consensus 204 ~--~~V~~v~~sp~~~~~~~las~s~D~--~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las 271 (297)
T 2pm7_B 204 S--DWVRDVAWSPTVLLRSYMASVSQDR--TCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLAL 271 (297)
T ss_dssp S--SCEEEEEECCCCSSSEEEEEEETTS--CEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEE
T ss_pred C--CceEEEEECCCCCCceEEEEEECCC--cEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEE
Confidence 3 56888999985 36788888875 67788876532 1 11221 12456778889999986653
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.03 E-value=3e-07 Score=96.73 Aligned_cols=250 Identities=13% Similarity=0.027 Sum_probs=127.8
Q ss_pred eCCEEEEEEEcC-CCCeeEEEEEeCCCCCceEEeCCCCcCCCCCEEEEeEEECCCCcEEEEEEeccCCceEEEEEEECCC
Q 004766 89 RGNKYFYFHNTG-LQPQSVLYVQDSLDAKAKVLLDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIED 167 (732)
Q Consensus 89 ~g~~~~~~~~~~-~~~~~~l~~r~~~~~~~~~l~D~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~ 167 (732)
+|.++|....++ ....-.+|..+..++..+.+...... + .....+++ ||++|+.+...+ ..|.+|++.+
T Consensus 60 dg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~---~-~~p~~~~~--dg~~l~~~~~~~----~~v~~~~~~~ 129 (361)
T 3scy_A 60 DGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTM---G-ADPCYLTT--NGKNIVTANYSG----GSITVFPIGQ 129 (361)
T ss_dssp TSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECS---S-SCEEEEEE--CSSEEEEEETTT----TEEEEEEBCT
T ss_pred CCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccC---C-CCcEEEEE--CCCEEEEEECCC----CEEEEEEeCC
Confidence 455565554432 22334457665433443333221111 1 11223445 999877654222 3688999875
Q ss_pred Cceecccc-----c----------ceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCCcccEEEEEECCCCCC--
Q 004766 168 QIVEADAL-----S----------WFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQS-- 230 (732)
Q Consensus 168 g~~~~~~~-----~----------~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~-- 230 (732)
...+.... . ......++|+|||+.|+++.. ....|+++++.....
T Consensus 130 ~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~------------------~~~~v~v~~~~~~~~~~ 191 (361)
T 3scy_A 130 DGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDL------------------GTDQIHKFNINPNANAD 191 (361)
T ss_dssp TSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEET------------------TTTEEEEEEECTTCCTT
T ss_pred CCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeC------------------CCCEEEEEEEcCCCCcc
Confidence 43221100 0 001245899999999888742 223577777664332
Q ss_pred --C-Ce-----EEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCCCCcEEeeec-
Q 004766 231 --E-DI-----LCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDG- 301 (732)
Q Consensus 231 --~-~~-----~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~- 301 (732)
+ -. ........ .....++|||||++|++.... ...|.++++.++.. .....+...
T Consensus 192 ~~~~l~~~~~~~~~~~~~~-~~~~~~~~spdg~~l~v~~~~----~~~v~v~~~~~g~~-----------~~~~~~~~~~ 255 (361)
T 3scy_A 192 NKEKFLTKGTPEAFKVAPG-SGPRHLIFNSDGKFAYLINEI----GGTVIAFRYADGML-----------DEIQTVAADT 255 (361)
T ss_dssp TCCCCEEEEEEEEEECCTT-CCEEEEEECTTSSEEEEEETT----TCEEEEEEEETTEE-----------EEEEEEESCS
T ss_pred cccceeecccccceecCCC-CCCeEEEEcCCCCEEEEEcCC----CCeEEEEEecCCce-----------EEeEEEecCC
Confidence 1 00 11222221 223578999999998766532 24577777765320 001111110
Q ss_pred --cc-ceEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEe--ccCCCCCceeEEEEecCCE-EEEEEecCCeeEE
Q 004766 302 --FD-AQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEV--IPEAERDVLESATAVNLNQ-MIVSYLSDVKYVL 375 (732)
Q Consensus 302 --~~-~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l--~~~~~~~~l~~~~~~~~~~-l~~~~~~~g~~~l 375 (732)
.. .....|+|||+.||+..........+|.++..++. ++.+ ++. ......+.+++++. |++....++.-.+
T Consensus 256 ~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~-~~~~~~~~~--g~~~~~~~~spdg~~l~~~~~~~~~v~v 332 (361)
T 3scy_A 256 VNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGT-LTKVGYQLT--GIHPRNFIITPNGKYLLVACRDTNVIQI 332 (361)
T ss_dssp SCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCC-EEEEEEEEC--SSCCCEEEECTTSCEEEEEETTTTEEEE
T ss_pred CCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCc-EEEeeEecC--CCCCceEEECCCCCEEEEEECCCCCEEE
Confidence 11 11235899999887544321334445555544554 2222 222 23456788988654 6655555655566
Q ss_pred EEEeCCCCce
Q 004766 376 QIRDLKNGSL 385 (732)
Q Consensus 376 ~~~d~~~g~~ 385 (732)
+.+|.++|+.
T Consensus 333 ~~~d~~~g~~ 342 (361)
T 3scy_A 333 FERDQATGLL 342 (361)
T ss_dssp EEECTTTCCE
T ss_pred EEEECCCCcE
Confidence 6678777775
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=99.02 E-value=4.7e-08 Score=102.98 Aligned_cols=212 Identities=6% Similarity=-0.053 Sum_probs=123.4
Q ss_pred EEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecc---cccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCC
Q 004766 133 ALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEAD---ALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAG 209 (732)
Q Consensus 133 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~---~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~ 209 (732)
.+..+.|||||++|+.... + ..|++||+++++.... .........++|+||++.|+....+.
T Consensus 54 ~v~~~~~~~~~~~l~~~~~-d----g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~---------- 118 (372)
T 1k8k_C 54 QVTGVDWAPDSNRIVTCGT-D----RNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSR---------- 118 (372)
T ss_dssp CEEEEEEETTTTEEEEEET-T----SCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTS----------
T ss_pred cccEEEEeCCCCEEEEEcC-C----CeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCC----------
Confidence 4778999999999986642 2 3799999998873221 11222357899999999888875332
Q ss_pred CcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcc---cc
Q 004766 210 TETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLE---GF 286 (732)
Q Consensus 210 ~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~---~~ 286 (732)
.|++|++.+.............+...+..+.|+|||++|+....++ .++++|+........ ..
T Consensus 119 ---------~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-----~i~~~d~~~~~~~~~~~~~~ 184 (372)
T 1k8k_C 119 ---------VISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDF-----KCRIFSAYIKEVEERPAPTP 184 (372)
T ss_dssp ---------SEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTS-----CEEEEECCCTTTSCCCCCBT
T ss_pred ---------EEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCC-----CEEEEEcccccccccccccc
Confidence 4677777654321111111122234567899999999987765433 377778642110000 00
Q ss_pred cc--cCCCCCcEEeeecccc-eEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecCCEE
Q 004766 287 KK--RDGLLPFVKLIDGFDA-QYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQM 363 (732)
Q Consensus 287 ~~--~~~~~~~~~l~~~~~~-~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~~l 363 (732)
+. .........+...... ....|+|+++.|+..+. ...|..+|+.++.....+..+ ...+..+.+++++.+
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d~~i~i~d~~~~~~~~~~~~~--~~~v~~~~~~~~~~~ 258 (372)
T 1k8k_C 185 WGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSH----DSTVCLADADKKMAVATLASE--TLPLLAVTFITESSL 258 (372)
T ss_dssp TBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEET----TTEEEEEEGGGTTEEEEEECS--SCCEEEEEEEETTEE
T ss_pred cccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeC----CCEEEEEECCCCceeEEEccC--CCCeEEEEEecCCCE
Confidence 00 0001112222111111 12258899887776553 346888998877644444333 356788999987777
Q ss_pred EEEEecCCeeEEEEEeCCC
Q 004766 364 IVSYLSDVKYVLQIRDLKN 382 (732)
Q Consensus 364 ~~~~~~~g~~~l~~~d~~~ 382 (732)
++.. .++ .|++|++.+
T Consensus 259 l~~~-~d~--~i~i~~~~~ 274 (372)
T 1k8k_C 259 VAAG-HDC--FPVLFTYDS 274 (372)
T ss_dssp EEEE-TTS--SCEEEEEET
T ss_pred EEEE-eCC--eEEEEEccC
Confidence 7666 554 566777765
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.02 E-value=2.8e-07 Score=94.56 Aligned_cols=246 Identities=11% Similarity=0.016 Sum_probs=145.3
Q ss_pred EEEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCc
Q 004766 132 AALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTE 211 (732)
Q Consensus 132 ~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~ 211 (732)
..+..+.|||||++||-.. ...+|++||+++++.+....... .....++++++.|+....+
T Consensus 68 ~~V~~v~~~~~~~~l~sgs-----~Dg~v~iw~~~~~~~~~~~~~h~-~~~~~~~~~~~~l~s~~~~------------- 128 (318)
T 4ggc_A 68 EYISSVAWIKEGNYLAVGT-----SSAEVQLWDVQQQKRLRNMTSHS-ARVGSLSWNSYILSSGSRS------------- 128 (318)
T ss_dssp CCEEEEEECTTSSEEEEEE-----TTSEEEEEETTTTEEEEEEECCS-SCEEEEEEETTEEEEEETT-------------
T ss_pred CeEEEEEECCCCCEEEEEE-----CCCcEEEeecCCceeEEEecCcc-ceEEEeecCCCEEEEEecC-------------
Confidence 4477899999999998553 22489999999998654322211 1345677888877665432
Q ss_pred ccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCC
Q 004766 212 TDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDG 291 (732)
Q Consensus 212 ~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 291 (732)
..+..+...+... .+..+.. +........++++|++|+....++ .+.++|+.++...
T Consensus 129 ------~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~l~s~~~d~-----~i~iwd~~~~~~~--------- 185 (318)
T 4ggc_A 129 ------GHIHHHDVRVAEH-HVATLSG--HSQEVCGLRWAPDGRHLASGGNDN-----LVNVWPSAPGEGG--------- 185 (318)
T ss_dssp ------SEEEEEETTSSSC-EEEEEEC--CSSCEEEEEECTTSSEEEEEETTS-----CEEEEESSCBTTB---------
T ss_pred ------CceEeeecCCCce-eEEEEcC--ccCceEEEEEcCCCCEEEEEecCc-----ceeEEECCCCccc---------
Confidence 2455666554432 1222222 233456788999999987665433 3778888764321
Q ss_pred CCCcEEeeecccc-eEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecC-CEEEEEEec
Q 004766 292 LLPFVKLIDGFDA-QYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNL-NQMIVSYLS 369 (732)
Q Consensus 292 ~~~~~~l~~~~~~-~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~-~~l~~~~~~ 369 (732)
............. ....+++++..++..... .....|..+|...... ....... ..+....+.++ +.+++.. .
T Consensus 186 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~i~lwd~~~~~~-~~~~~~~--~~v~~~~~~~~~~~~~~~s-g 260 (318)
T 4ggc_A 186 WVPLQTFTQHQGAVKAVAWCPWQSNVLATGGG-TSDRHIRIWNVCSGAC-LSAVDAH--SQVCSILWSPHYKELISGH-G 260 (318)
T ss_dssp SCCSEEECCCCSCEEEEEECTTSTTEEEEEEC-TTTCEEEEEETTTCCE-EEEEECS--SCEEEEEEETTTTEEEEEE-C
T ss_pred ccceeeecccCCceEEEEecCCCCcEEEEEec-CCCCEEEEEecccccc-cccccce--eeeeeeeecccccceEEEE-E
Confidence 0111111111111 122467776666544332 2244677788777652 2222222 44566667664 4444433 2
Q ss_pred CCeeEEEEEeCCCCceeeecccccceeeEeecccCCcEEEEEEecCCCCceEEEEECCC
Q 004766 370 DVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKT 428 (732)
Q Consensus 370 ~g~~~l~~~d~~~g~~~~~l~~~~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~ 428 (732)
.....|++||+.+++.+..+..+.+.|..+.+++|++.|+ +.+. -..+..||+..
T Consensus 261 ~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~-S~s~---D~~v~iWd~~~ 315 (318)
T 4ggc_A 261 FAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVA-SAAA---DETLRLWRCFE 315 (318)
T ss_dssp TTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEE-EEET---TTEEEEECCSC
T ss_pred cCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEE-EEec---CCeEEEEECCC
Confidence 2225799999998988788876777888999999998554 4433 24677777643
|
| >2ha2_A ACHE, acetylcholinesterase; hydrolase fold, serine esterase, homod glycosylated protein, hydrolase; HET: NAG FUC SCK SCU P6G; 2.05A {Mus musculus} SCOP: c.69.1.1 PDB: 1j07_A* 1mah_A* 1j06_A* 1n5r_A* 2gyv_A* 2gyw_A* 2h9y_A* 2ha0_A* 2gyu_A* 2ha3_A* 2wls_A* 4a23_A* 2c0q_A* 2jey_A* 2jgm_A* 2whr_A* 2c0p_A* 1ku6_A* 1q84_A* 1q83_A* ... | Back alignment and structure |
|---|
Probab=99.02 E-value=2.2e-10 Score=127.03 Aligned_cols=131 Identities=22% Similarity=0.151 Sum_probs=89.5
Q ss_pred ccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCC---CCcChhHHHHHHhcCcEEEEEcccCC-CCCchhHHhcc
Q 004766 458 SKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVT---PSFSVSRTILMRHLGAVFCIANIRGG-GEYGEEWHKGG 533 (732)
Q Consensus 458 s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~---~~~~~~~~~~l~~~G~~v~~~~~rG~-g~~g~~~~~~~ 533 (732)
+.|. .. +.++.|+.. .+++.|+||++|||...... ..+.. ..++.+.|++|+.+|||.+ -+|+... ..
T Consensus 93 ~edc-l~--l~v~~P~~~-~~~~~Pviv~iHGGg~~~g~~~~~~~~~--~~la~~~g~vvv~~nYRlg~~Gf~~~~--~~ 164 (543)
T 2ha2_A 93 SEDC-LY--LNVWTPYPR-PASPTPVLIWIYGGGFYSGAASLDVYDG--RFLAQVEGAVLVSMNYRVGTFGFLALP--GS 164 (543)
T ss_dssp ESCC-CE--EEEEEESSC-CSSCEEEEEEECCSTTTCCCTTSGGGCT--HHHHHHHCCEEEEECCCCHHHHHCCCT--TC
T ss_pred CCcC-Ce--EEEeecCCC-CCCCCeEEEEECCCccccCCCCCCcCCh--HHHHhcCCEEEEEecccccccccccCC--CC
Confidence 4566 44 455677653 24568999999998533222 23443 2344447999999999953 1222110 00
Q ss_pred cccCCccHHHHHHHHHHHHHHcC---CCCCCcEEEEecChhHHHHHHHHhhC--CCeeeEEEEcCCcc
Q 004766 534 ALAKKQNCFDDFISASEYLISAG---YTQSRKLCIEGGSNGGLLVGACINQR--PDLFGCALAHVGVM 596 (732)
Q Consensus 534 ~~~~~~~~~~D~~~~~~~l~~~~---~~d~~~i~i~G~S~GG~l~~~~~~~~--p~~f~a~v~~~p~~ 596 (732)
........+.|+++|++|+.++- -.||+||.|+|+|+||.+++.++... +.+|+++|+.+|..
T Consensus 165 ~~~~~n~gl~D~~~al~wv~~~i~~fggDp~~v~i~G~SaGg~~~~~~~~~~~~~~lf~~~i~~sg~~ 232 (543)
T 2ha2_A 165 REAPGNVGLLDQRLALQWVQENIAAFGGDPMSVTLFGESAGAASVGMHILSLPSRSLFHRAVLQSGTP 232 (543)
T ss_dssp SSCCSCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHSHHHHTTCSEEEEESCCS
T ss_pred CCCCCcccHHHHHHHHHHHHHHHHHhCCChhheEEEeechHHHHHHHHHhCcccHHhHhhheeccCCc
Confidence 11223346899999999998762 26999999999999999998887752 46999999999864
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.01 E-value=6.3e-08 Score=98.86 Aligned_cols=239 Identities=6% Similarity=-0.081 Sum_probs=142.3
Q ss_pred EEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCccc
Q 004766 134 LIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETD 213 (732)
Q Consensus 134 ~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~ 213 (732)
..++.|+|||+.|.++...++ .|+++|.+++ ............+++++|||+ |+++..
T Consensus 30 ~eg~~~d~~g~~l~~~~~~~~----~i~~~~~~~~-~~~~~~~~~~~~~l~~~~dg~-l~v~~~---------------- 87 (296)
T 3e5z_A 30 TEGPVYVPARSAVIFSDVRQN----RTWAWSDDGQ-LSPEMHPSHHQNGHCLNKQGH-LIACSH---------------- 87 (296)
T ss_dssp EEEEEEEGGGTEEEEEEGGGT----EEEEEETTSC-EEEEESSCSSEEEEEECTTCC-EEEEET----------------
T ss_pred ccCCeEeCCCCEEEEEeCCCC----EEEEEECCCC-eEEEECCCCCcceeeECCCCc-EEEEec----------------
Confidence 358999999997777754333 7999999887 322221222246899999998 444421
Q ss_pred CCcccEEEEEECCCCCCCCeEEEecCCCC--eeEEEeEEecCCcEEEEEEecCC------------cceEEEEEEeCCCC
Q 004766 214 SNLYHEFYYHFLGTKQSEDILCWKDPEHP--KYIFSGHVTEDGQYLVMCIEENC------------DPVNKVYYCDLSAL 279 (732)
Q Consensus 214 ~~~~~~v~~~~lgt~~~~~~~v~~~~~~~--~~~~~~~~SpDg~~l~~~~~~~~------------~~~~~l~~~d~~~~ 279 (732)
....|++++..++... .+....... .....++++|||+.++.....+. .....||.++..+
T Consensus 88 --~~~~i~~~d~~~g~~~--~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~g- 162 (296)
T 3e5z_A 88 --GLRRLERQREPGGEWE--SIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPDG- 162 (296)
T ss_dssp --TTTEEEEECSTTCCEE--EEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTTS-
T ss_pred --CCCeEEEEcCCCCcEE--EEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCCC-
Confidence 2246888887655422 222111110 11235789999985432110000 0124788888663
Q ss_pred CCCcccccccCCCCCcEEeeecccc-eEEEEEecCCeEEEEeCCCCCCceEEEEeCC-CCCCc---eEeccCCCCCceeE
Q 004766 280 PEGLEGFKKRDGLLPFVKLIDGFDA-QYEVIANDDTVFTFLTNKDAPKYKIIRVDLK-EPNDW---FEVIPEAERDVLES 354 (732)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~-~~~~~---~~l~~~~~~~~l~~ 354 (732)
. ...+...... .-..|+|||+.+ +.... ..+|++++++ ++. + ..++ ........+
T Consensus 163 ~--------------~~~~~~~~~~~~gi~~s~dg~~l-v~~~~---~~~i~~~~~~~~g~-~~~~~~~~-~~~~~~p~~ 222 (296)
T 3e5z_A 163 T--------------LSAPIRDRVKPNGLAFLPSGNLL-VSDTG---DNATHRYCLNARGE-TEYQGVHF-TVEPGKTDG 222 (296)
T ss_dssp C--------------EEEEECCCSSEEEEEECTTSCEE-EEETT---TTEEEEEEECSSSC-EEEEEEEE-CCSSSCCCS
T ss_pred C--------------EEEeecCCCCCccEEECCCCCEE-EEeCC---CCeEEEEEECCCCc-CcCCCeEe-eCCCCCCCe
Confidence 1 2233322221 123589999877 44332 3478888876 333 3 2333 222234456
Q ss_pred EEEecCCEEEEEEecCCeeEEEEEeCCCCceeeecccccceeeEeec-ccCCcEEEEEEecCCCCceEEEEECCCCC
Q 004766 355 ATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISA-RREDSVVFISFTSFLIPGIVYQCNLKTET 430 (732)
Q Consensus 355 ~~~~~~~~l~~~~~~~g~~~l~~~d~~~g~~~~~l~~~~g~v~~~~~-s~d~~~l~~~~ss~~~p~~~y~~d~~~~~ 430 (732)
+.+.+++.+++.. + ..|++|+.+ |+.+..+..+.+ +..+.+ +++++.|+++.. ..+|++++.+++
T Consensus 223 i~~d~~G~l~v~~--~--~~v~~~~~~-g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~-----~~l~~~~~~~~~ 288 (296)
T 3e5z_A 223 LRVDAGGLIWASA--G--DGVHVLTPD-GDELGRVLTPQT-TSNLCFGGPEGRTLYMTVS-----TEFWSIETNVRG 288 (296)
T ss_dssp EEEBTTSCEEEEE--T--TEEEEECTT-SCEEEEEECSSC-CCEEEEESTTSCEEEEEET-----TEEEEEECSCCB
T ss_pred EEECCCCCEEEEc--C--CeEEEECCC-CCEEEEEECCCC-ceeEEEECCCCCEEEEEcC-----CeEEEEEccccc
Confidence 7888767787776 3 469999987 777677776655 666666 578888887643 379999988764
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.01 E-value=4.6e-07 Score=93.96 Aligned_cols=241 Identities=12% Similarity=0.067 Sum_probs=144.0
Q ss_pred ceEEeCCC-CcCCCCCEEEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecccccceeeeeEEEEeCCcEEEEE
Q 004766 117 AKVLLDPN-TLSDDGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWFKFSSIAWTHDSKGFFYS 195 (732)
Q Consensus 117 ~~~l~D~~-~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~~~~~~~~~~WspDg~~l~y~ 195 (732)
.++|++.. .+ ..++.|+||++.|.++-..+ ..|+++|.++++........ ....++|+|||+.++.+
T Consensus 40 ~~~~~~~~~~~-------~egp~~~~~~~~l~~~d~~~----~~i~~~d~~~~~~~~~~~~~-~v~~i~~~~dg~l~v~~ 107 (326)
T 2ghs_A 40 GRVLDETPMLL-------GEGPTFDPASGTAWWFNILE----RELHELHLASGRKTVHALPF-MGSALAKISDSKQLIAS 107 (326)
T ss_dssp CEEEECSCCSB-------EEEEEEETTTTEEEEEEGGG----TEEEEEETTTTEEEEEECSS-CEEEEEEEETTEEEEEE
T ss_pred eEEeeccCCCC-------CcCCeEeCCCCEEEEEECCC----CEEEEEECCCCcEEEEECCC-cceEEEEeCCCeEEEEE
Confidence 46666642 22 24789999988887774332 37999999988743222222 34788999999755432
Q ss_pred EecCCCCCCCCCCCCcccCCcccEEEEEECCCCCCCCeEEEecCC--CCeeEEEeEEecCCcEEEEEEecC--CcceEEE
Q 004766 196 RYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPE--HPKYIFSGHVTEDGQYLVMCIEEN--CDPVNKV 271 (732)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~--~~~~~~~~~~SpDg~~l~~~~~~~--~~~~~~l 271 (732)
. ..|++++..++... .+..... .......+.++|||+.. +..... ......|
T Consensus 108 -~--------------------~gl~~~d~~~g~~~--~~~~~~~~~~~~~~~~i~~d~~G~l~-v~~~~~~~~~~~~~l 163 (326)
T 2ghs_A 108 -D--------------------DGLFLRDTATGVLT--LHAELESDLPGNRSNDGRMHPSGALW-IGTMGRKAETGAGSI 163 (326)
T ss_dssp -T--------------------TEEEEEETTTCCEE--EEECSSTTCTTEEEEEEEECTTSCEE-EEEEETTCCTTCEEE
T ss_pred -C--------------------CCEEEEECCCCcEE--EEeeCCCCCCCCCCCCEEECCCCCEE-EEeCCCcCCCCceEE
Confidence 1 13888887665422 2222111 11345678999999854 333221 0124679
Q ss_pred EEEeCCCCCCCcccccccCCCCCcEEeeecccc-eEEEEEecCCeEEEEeCCCCCCceEEEEeCC--CC-C--CceEecc
Q 004766 272 YYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDA-QYEVIANDDTVFTFLTNKDAPKYKIIRVDLK--EP-N--DWFEVIP 345 (732)
Q Consensus 272 ~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~--~~-~--~~~~l~~ 345 (732)
|.++ .+ . ...+...... ....|++||+.+|+.... ..+|++++++ ++ . ..+.+..
T Consensus 164 ~~~~-~g-~--------------~~~~~~~~~~~~~i~~s~dg~~lyv~~~~---~~~I~~~d~~~~~Gl~~~~~~~~~~ 224 (326)
T 2ghs_A 164 YHVA-KG-K--------------VTKLFADISIPNSICFSPDGTTGYFVDTK---VNRLMRVPLDARTGLPTGKAEVFID 224 (326)
T ss_dssp EEEE-TT-E--------------EEEEEEEESSEEEEEECTTSCEEEEEETT---TCEEEEEEBCTTTCCBSSCCEEEEE
T ss_pred EEEe-CC-c--------------EEEeeCCCcccCCeEEcCCCCEEEEEECC---CCEEEEEEcccccCCcccCceEEEE
Confidence 9998 32 2 2223222211 123589999988886443 3479999875 44 2 1122211
Q ss_pred -CCCCCceeEEEEecCCEEEEEEecCCeeEEEEEeCCCCceeeecccccceeeEeecc-cCCcEEEEEEecC
Q 004766 346 -EAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISAR-REDSVVFISFTSF 415 (732)
Q Consensus 346 -~~~~~~l~~~~~~~~~~l~~~~~~~g~~~l~~~d~~~g~~~~~l~~~~g~v~~~~~s-~d~~~l~~~~ss~ 415 (732)
........++.+.+++.+++....+ ..|++++.+ |+.++.+..+...+..+.++ ++++.|+++....
T Consensus 225 ~~~~~~~p~gi~~d~~G~lwva~~~~--~~v~~~d~~-g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~~~~ 293 (326)
T 2ghs_A 225 STGIKGGMDGSVCDAEGHIWNARWGE--GAVDRYDTD-GNHIARYEVPGKQTTCPAFIGPDASRLLVTSARE 293 (326)
T ss_dssp CTTSSSEEEEEEECTTSCEEEEEETT--TEEEEECTT-CCEEEEEECSCSBEEEEEEESTTSCEEEEEEBCT
T ss_pred CCCCCCCCCeeEECCCCCEEEEEeCC--CEEEEECCC-CCEEEEEECCCCCcEEEEEecCCCCEEEEEecCC
Confidence 1112345677777667777765544 379999984 77667777765556677776 7888888776554
|
| >1ea5_A ACHE, acetylcholinesterase; hydrolase, serine hydrolase, neurotransmitter cleavage, catalytic triad, alpha/beta hydrolase; HET: NAG; 1.80A {Torpedo californica} SCOP: c.69.1.1 PDB: 1ax9_A* 1amn_A* 1cfj_A* 1fss_A* 1gpk_A* 1gpn_A* 1oce_A* 1qid_A 1qie_A 1qif_A 1qig_A 1qih_A 1qii_A 1qij_A 1qik_A 1qim_A 1qti_A* 1vot_A* 1vxo_A* 1vxr_A* ... | Back alignment and structure |
|---|
Probab=99.01 E-value=2.4e-10 Score=126.48 Aligned_cols=225 Identities=19% Similarity=0.174 Sum_probs=131.1
Q ss_pred ccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCc---cCCCCcChhHHHHHHhcCcEEEEEcccCCC-CCchhHHhcc
Q 004766 458 SKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNI---SVTPSFSVSRTILMRHLGAVFCIANIRGGG-EYGEEWHKGG 533 (732)
Q Consensus 458 s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~---~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g-~~g~~~~~~~ 533 (732)
+.|. . .+.++.|+.. .++.|+||++|||... .....|.. ..++.+.|++|+.+|||.+. +|...- ..
T Consensus 91 sedc-l--~lnv~~P~~~--~~~~Pv~v~iHGG~~~~g~~~~~~~~~--~~la~~~~~vvv~~nYRlg~~Gf~~~~--~~ 161 (537)
T 1ea5_A 91 SEDC-L--YLNIWVPSPR--PKSTTVMVWIYGGGFYSGSSTLDVYNG--KYLAYTEEVVLVSLSYRVGAFGFLALH--GS 161 (537)
T ss_dssp CSCC-C--EEEEEECSSC--CSSEEEEEEECCSTTTCCCTTCGGGCT--HHHHHHHTCEEEECCCCCHHHHHCCCT--TC
T ss_pred CCcC-C--eEEEeccCCC--CCCCeEEEEECCCcccCCCCCCCccCh--HHHHhcCCEEEEEeccCccccccccCC--CC
Confidence 4455 4 4455678653 3678999999998433 22223443 34454689999999999531 111000 00
Q ss_pred cccCCccHHHHHHHHHHHHHHcC---CCCCCcEEEEecChhHHHHHHHHhh--CCCeeeEEEEcCCccccccccc-CCC-
Q 004766 534 ALAKKQNCFDDFISASEYLISAG---YTQSRKLCIEGGSNGGLLVGACINQ--RPDLFGCALAHVGVMDMLRYHK-FTI- 606 (732)
Q Consensus 534 ~~~~~~~~~~D~~~~~~~l~~~~---~~d~~~i~i~G~S~GG~l~~~~~~~--~p~~f~a~v~~~p~~d~~~~~~-~~~- 606 (732)
....+...+.|..+|++|+.++- -.||+||.|+|+|+||.+++.++.. .+.+|+++|+.+|......... ...
T Consensus 162 ~~~~~n~gl~D~~~al~wv~~ni~~fggdp~~vtl~G~SaGg~~~~~~~~~~~~~~lf~~~i~~Sg~~~~~~~~~~~~~~ 241 (537)
T 1ea5_A 162 QEAPGNVGLLDQRMALQWVHDNIQFFGGDPKTVTIFGESAGGASVGMHILSPGSRDLFRRAILQSGSPNCPWASVSVAEG 241 (537)
T ss_dssp SSSCSCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCHHHHTTCSEEEEESCCTTCTTSCBCHHHH
T ss_pred CCCcCccccHHHHHHHHHHHHHHHHhCCCccceEEEecccHHHHHHHHHhCccchhhhhhheeccCCccCCccccCHHHH
Confidence 11223346899999999998862 3699999999999999999988875 2468999999999754211110 000
Q ss_pred ---CCccccccCCCC--CHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhcC
Q 004766 607 ---GHAWVSDFGCSE--EEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCT 681 (732)
Q Consensus 607 ---~~~~~~~~g~p~--~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~ 681 (732)
........|++. ..+..+.|++.++-..+........ ......+...-.-|..+-+.++.++.+.-+..
T Consensus 242 ~~~~~~~a~~lgc~~~~~~~~~~cLr~~~~~~l~~a~~~~~~---~~~~~~~~f~PvvDg~~lp~~p~~~~~~g~~~--- 315 (537)
T 1ea5_A 242 RRRAVELGRNLNCNLNSDEELIHCLREKKPQELIDVEWNVLP---FDSIFRFSFVPVIDGEFFPTSLESMLNSGNFK--- 315 (537)
T ss_dssp HHHHHHHHHHTTCCCSSHHHHHHHHHHSCHHHHHHHGGGGCS---SSCSSCCSSCCBCCSSSSSSCHHHHHHHTCSC---
T ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHhhCCHHHHHHHHhhhcc---ccccccccceeeECcccCCcCHHHHHhcCCCC---
Confidence 001113456652 3445677777655322211000000 00000111122236667777777665543322
Q ss_pred CCCCCCCCCCEEEEEeCCCCCCC
Q 004766 682 SLENSPQTNPIIGRIERKAGHGV 704 (732)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~~gH~~ 704 (732)
++|+.+-...++|+.+
T Consensus 316 -------~vp~liG~~~~Eg~~f 331 (537)
T 1ea5_A 316 -------KTQILLGVNKDEGSFF 331 (537)
T ss_dssp -------CSCEEEEEETBTTHHH
T ss_pred -------CCCEEEeeecchhHHH
Confidence 7899999999998743
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.01 E-value=4e-07 Score=94.45 Aligned_cols=252 Identities=11% Similarity=0.047 Sum_probs=146.6
Q ss_pred EEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceeccc-ccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcc
Q 004766 134 LIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADA-LSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTET 212 (732)
Q Consensus 134 ~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~-~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~ 212 (732)
..++.|+|||+ |.++. ..+ ..|+++|+++++..... .......+++|+|||+ |+++....
T Consensus 47 ~~~~~~~~~g~-l~~~~-~~~---~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~-l~v~~~~~------------- 107 (333)
T 2dg1_A 47 LEGLNFDRQGQ-LFLLD-VFE---GNIFKINPETKEIKRPFVSHKANPAAIKIHKDGR-LFVCYLGD------------- 107 (333)
T ss_dssp EEEEEECTTSC-EEEEE-TTT---CEEEEECTTTCCEEEEEECSSSSEEEEEECTTSC-EEEEECTT-------------
T ss_pred ccCcEECCCCC-EEEEE-CCC---CEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCc-EEEEeCCC-------------
Confidence 46889999998 44332 222 37999999988754321 1112347899999997 44443211
Q ss_pred cCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecC--CcceEEEEEEeCCCCCCCcccccccC
Q 004766 213 DSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEEN--CDPVNKVYYCDLSALPEGLEGFKKRD 290 (732)
Q Consensus 213 ~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~--~~~~~~l~~~d~~~~~~~~~~~~~~~ 290 (732)
......|++++..++... .+............+.++|||+.++ ..... ......||.++.+++.
T Consensus 108 -~~~~~~i~~~d~~~~~~~--~~~~~~~~~~~~~~i~~d~~g~l~v-~~~~~~~~~~~~~l~~~~~~~~~---------- 173 (333)
T 2dg1_A 108 -FKSTGGIFAATENGDNLQ--DIIEDLSTAYCIDDMVFDSKGGFYF-TDFRGYSTNPLGGVYYVSPDFRT---------- 173 (333)
T ss_dssp -SSSCCEEEEECTTSCSCE--EEECSSSSCCCEEEEEECTTSCEEE-EECCCBTTBCCEEEEEECTTSCC----------
T ss_pred -CCCCceEEEEeCCCCEEE--EEEccCccCCcccceEECCCCCEEE-EeccccccCCCceEEEEeCCCCE----------
Confidence 011246888887765322 1222111123456789999997544 33211 1124679999876532
Q ss_pred CCCCcEEeeecccc-eEEEEEecCCeEEEEeCCCCCCceEEEEeCCC-CCCceE----ec-cCCCCCceeEEEEecCCEE
Q 004766 291 GLLPFVKLIDGFDA-QYEVIANDDTVFTFLTNKDAPKYKIIRVDLKE-PNDWFE----VI-PEAERDVLESATAVNLNQM 363 (732)
Q Consensus 291 ~~~~~~~l~~~~~~-~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~-~~~~~~----l~-~~~~~~~l~~~~~~~~~~l 363 (732)
...+...... ....|++||+.+|+.... ...|+++++++ +..... +. .........++.+.+++.+
T Consensus 174 ----~~~~~~~~~~~~~i~~~~dg~~l~v~~~~---~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l 246 (333)
T 2dg1_A 174 ----VTPIIQNISVANGIALSTDEKVLWVTETT---ANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNL 246 (333)
T ss_dssp ----EEEEEEEESSEEEEEECTTSSEEEEEEGG---GTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCE
T ss_pred ----EEEeecCCCcccceEECCCCCEEEEEeCC---CCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCE
Confidence 2233222211 123588999888876543 34788888853 221221 11 1111134567788776777
Q ss_pred EEEEecCCeeEEEEEeCCCCceeeecccccc------eeeEeecccCCcEEEEEEecC--CCCceEEEEECCC
Q 004766 364 IVSYLSDVKYVLQIRDLKNGSLLHQLPIEIG------SVNAISARREDSVVFISFTSF--LIPGIVYQCNLKT 428 (732)
Q Consensus 364 ~~~~~~~g~~~l~~~d~~~g~~~~~l~~~~g------~v~~~~~s~d~~~l~~~~ss~--~~p~~~y~~d~~~ 428 (732)
++....+ ..|+++|.+ |+.++.+..+.. .+..+.+++|++.|+++.+.- .....+|++++..
T Consensus 247 ~v~~~~~--~~v~~~d~~-g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g~~~~~~~l~~~~~~~ 316 (333)
T 2dg1_A 247 YVAMYGQ--GRVLVFNKR-GYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNGFA 316 (333)
T ss_dssp EEEEETT--TEEEEECTT-SCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEECSS
T ss_pred EEEEcCC--CEEEEECCC-CCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCccCCCCCceEEEEeccc
Confidence 7776554 478899985 766566665532 456677788888888776553 2346788888653
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=99.00 E-value=1.6e-07 Score=98.25 Aligned_cols=236 Identities=11% Similarity=0.016 Sum_probs=138.9
Q ss_pred EEEeEEE-----CC-CCcEEEEEEeccCCceEEEEEEECCCCce-------ec-ccccceeeeeEEEEeCCcEEEEEEec
Q 004766 133 ALIKVSV-----SE-DAKYLAYALSYSGSDWATIKLMRIEDQIV-------EA-DALSWFKFSSIAWTHDSKGFFYSRYP 198 (732)
Q Consensus 133 ~~~~~~~-----SP-DG~~la~~~~~~G~e~~~i~v~dl~~g~~-------~~-~~~~~~~~~~~~WspDg~~l~y~~~~ 198 (732)
.+..+.| +| ||++|+-.. ...+|++||+.+++. .. ..........++|+||++.|+....+
T Consensus 23 ~V~~~~~~~s~~~~~d~~~l~sgs-----~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D 97 (343)
T 2xzm_R 23 WVTSIVAGFSQKENEDSPVLISGS-----RDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWD 97 (343)
T ss_dssp CEEEEEECCCSSTTCCCCEEEEEE-----TTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETT
T ss_pred hhhheeeEEEeecCCCCCEEEEEc-----CCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCC
Confidence 3567777 77 999887443 224799999976431 11 11111124789999999988766533
Q ss_pred CCCCCCCCCCCCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCC
Q 004766 199 APKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSA 278 (732)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~ 278 (732)
..|.+|++.++.. +..+.. +...+..++|+|||++|+..+.++ .+.++|+.+
T Consensus 98 -------------------~~v~lwd~~~~~~--~~~~~~--h~~~v~~v~~sp~~~~l~s~~~d~-----~i~~wd~~~ 149 (343)
T 2xzm_R 98 -------------------KTLRLWDLRTGTT--YKRFVG--HQSEVYSVAFSPDNRQILSAGAER-----EIKLWNILG 149 (343)
T ss_dssp -------------------SEEEEEETTSSCE--EEEEEC--CCSCEEEEEECSSTTEEEEEETTS-----CEEEEESSS
T ss_pred -------------------CcEEEEECCCCcE--EEEEcC--CCCcEEEEEECCCCCEEEEEcCCC-----EEEEEeccC
Confidence 3689999877542 122322 334567899999999987665433 377778764
Q ss_pred CCCCcccccccCCCCCcEEee---eccc-ceEEEEEecC----------CeEEEEeCCCCCCceEEEEeCCCCCCceEec
Q 004766 279 LPEGLEGFKKRDGLLPFVKLI---DGFD-AQYEVIANDD----------TVFTFLTNKDAPKYKIIRVDLKEPNDWFEVI 344 (732)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~l~---~~~~-~~~~~~s~dg----------~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~ 344 (732)
.. ..... .... .....|+|++ ..|+..+. ...|..+|..... ...+.
T Consensus 150 ~~--------------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~----d~~i~iwd~~~~~-~~~~~ 210 (343)
T 2xzm_R 150 EC--------------KFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGW----DGRLKVWNTNFQI-RYTFK 210 (343)
T ss_dssp CE--------------EEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEET----TSEEEEEETTTEE-EEEEE
T ss_pred Cc--------------eeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcC----CCEEEEEcCCCce-eEEEc
Confidence 21 00000 0000 1112366665 34443322 3467778843321 23333
Q ss_pred cCCCCCceeEEEEecCCEEEEEEecCCeeEEEEEeCCCC-ceeeecccccceeeEeecccCCcEEEEEEecCCCCceEEE
Q 004766 345 PEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNG-SLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQ 423 (732)
Q Consensus 345 ~~~~~~~l~~~~~~~~~~l~~~~~~~g~~~l~~~d~~~g-~~~~~l~~~~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~ 423 (732)
.+. ..+..+.+++++.++++...++ .|++||+.+. .....+. ....+..+.++|++..+... + -..+..
T Consensus 211 ~h~--~~v~~~~~s~~g~~l~sgs~dg--~v~iwd~~~~~~~~~~~~-~~~~v~~v~~sp~~~~la~~--~---d~~v~i 280 (343)
T 2xzm_R 211 AHE--SNVNHLSISPNGKYIATGGKDK--KLLIWDILNLTYPQREFD-AGSTINQIAFNPKLQWVAVG--T---DQGVKI 280 (343)
T ss_dssp CCS--SCEEEEEECTTSSEEEEEETTC--EEEEEESSCCSSCSEEEE-CSSCEEEEEECSSSCEEEEE--E---SSCEEE
T ss_pred Ccc--ccceEEEECCCCCEEEEEcCCC--eEEEEECCCCcccceeec-CCCcEEEEEECCCCCEEEEE--C---CCCEEE
Confidence 443 5688899998777788887774 7889998433 2222222 23457788889998755432 2 235888
Q ss_pred EECCCCC
Q 004766 424 CNLKTET 430 (732)
Q Consensus 424 ~d~~~~~ 430 (732)
+|+.+++
T Consensus 281 w~~~~~~ 287 (343)
T 2xzm_R 281 FNLMTQS 287 (343)
T ss_dssp EESSSCC
T ss_pred EEeCCCC
Confidence 8887764
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.00 E-value=2.4e-08 Score=106.95 Aligned_cols=247 Identities=12% Similarity=0.083 Sum_probs=146.0
Q ss_pred CCEEEEeEEECC-CCcEEEEEEeccCCceEEEEEEECCCCce-------ec-ccccceeeeeEEEEeCCc-EEEEEEecC
Q 004766 130 GTAALIKVSVSE-DAKYLAYALSYSGSDWATIKLMRIEDQIV-------EA-DALSWFKFSSIAWTHDSK-GFFYSRYPA 199 (732)
Q Consensus 130 ~~~~~~~~~~SP-DG~~la~~~~~~G~e~~~i~v~dl~~g~~-------~~-~~~~~~~~~~~~WspDg~-~l~y~~~~~ 199 (732)
+...+..+.||| |+++||.... ...|+|||+.++.. +. ..........++|+||++ .|+....
T Consensus 80 h~~~V~~~~~~p~~~~~l~s~s~-----dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~-- 152 (402)
T 2aq5_A 80 HTAPVLDIAWCPHNDNVIASGSE-----DCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGC-- 152 (402)
T ss_dssp CSSCEEEEEECTTCTTEEEEEET-----TSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEET--
T ss_pred CCCCEEEEEeCCCCCCEEEEEeC-----CCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcC--
Confidence 345688999999 8988876632 24799999998732 11 111122357899999985 5554432
Q ss_pred CCCCCCCCCCCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCC
Q 004766 200 PKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSAL 279 (732)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~ 279 (732)
...|++|++.++.. +..+....+...+..++|+|||++|+....+ ..|.++|+.++
T Consensus 153 -----------------dg~i~iwd~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~ 208 (402)
T 2aq5_A 153 -----------------DNVILVWDVGTGAA--VLTLGPDVHPDTIYSVDWSRDGALICTSCRD-----KRVRVIEPRKG 208 (402)
T ss_dssp -----------------TSCEEEEETTTTEE--EEEECTTTCCSCEEEEEECTTSSCEEEEETT-----SEEEEEETTTT
T ss_pred -----------------CCEEEEEECCCCCc--cEEEecCCCCCceEEEEECCCCCEEEEEecC-----CcEEEEeCCCC
Confidence 23588999886532 1222102334456789999999998876543 34888998764
Q ss_pred CCCcccccccCCCCCcEEeeecc-c--ceEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEE
Q 004766 280 PEGLEGFKKRDGLLPFVKLIDGF-D--AQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESAT 356 (732)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~l~~~~-~--~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~ 356 (732)
. ....+.... . .....|+|+|..|+...+. .....|..+|+.+......+........+..+.
T Consensus 209 ~-------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 274 (402)
T 2aq5_A 209 T-------------VVAEKDRPHEGTRPVHAVFVSEGKILTTGFSR-MSERQVALWDTKHLEEPLSLQELDTSSGVLLPF 274 (402)
T ss_dssp E-------------EEEEEECSSCSSSCCEEEECSTTEEEEEEECT-TCCEEEEEEETTBCSSCSEEEECCCCSSCEEEE
T ss_pred c-------------eeeeeccCCCCCcceEEEEcCCCcEEEEeccC-CCCceEEEEcCccccCCceEEeccCCCceeEEE
Confidence 2 122221111 1 1233588987655543221 235689999998765211222211124567788
Q ss_pred EecCCE-EEEEEecCCeeEEEEEeCCCCce-eeeccc--ccceeeEeecccCCcEEEEEEecCCCCceEEEEECCCC
Q 004766 357 AVNLNQ-MIVSYLSDVKYVLQIRDLKNGSL-LHQLPI--EIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTE 429 (732)
Q Consensus 357 ~~~~~~-l~~~~~~~g~~~l~~~d~~~g~~-~~~l~~--~~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~ 429 (732)
+++++. +++....++ .|++|++.+++. +..+.. ..+.+..+.+++++..++ ++ -..+..|++.++
T Consensus 275 ~s~~~~~l~~~g~~dg--~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~---s~---~~~~~~~~l~~~ 343 (402)
T 2aq5_A 275 FDPDTNIVYLCGKGDS--SIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEV---NK---CEIARFYKLHER 343 (402)
T ss_dssp EETTTTEEEEEETTCS--CEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCG---GG---TEEEEEEEEETT
T ss_pred EcCCCCEEEEEEcCCC--eEEEEEecCCCcceEeecccccCCcccceEEecccccce---ec---ceeEEEEEcCCC
Confidence 887644 555555564 688889887763 334432 235566778888876432 11 125566666565
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.00 E-value=3.1e-08 Score=103.65 Aligned_cols=242 Identities=6% Similarity=-0.027 Sum_probs=142.9
Q ss_pred EEEeEEECCC---CcEEEEEEeccCCceEEEEEEECCCCc-eecc-cccceeeeeE------EEEeCCcEEEEEEecCCC
Q 004766 133 ALIKVSVSED---AKYLAYALSYSGSDWATIKLMRIEDQI-VEAD-ALSWFKFSSI------AWTHDSKGFFYSRYPAPK 201 (732)
Q Consensus 133 ~~~~~~~SPD---G~~la~~~~~~G~e~~~i~v~dl~~g~-~~~~-~~~~~~~~~~------~WspDg~~l~y~~~~~~~ 201 (732)
.+..+.|+|+ |++|+.... + ..|++||+.+++ .+.. .........+ +|+||++.|+....+
T Consensus 67 ~v~~~~~~~~~~~~~~l~~~~~-d----g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d--- 138 (357)
T 3i2n_A 67 PIKCGTFGATSLQQRYLATGDF-G----GNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRD--- 138 (357)
T ss_dssp CEEEEECTTCCTTTCCEEEEET-T----SCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETT---
T ss_pred cEEEEEEcCCCCCCceEEEecC-C----CeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCC---
Confidence 3678899999 688876532 2 379999999887 3321 1111123455 467899988876533
Q ss_pred CCCCCCCCCcccCCcccEEEEEECCCCCCCCeEEEecCCC--CeeEEEeE----EecCCcEEEEEEecCCcceEEEEEEe
Q 004766 202 EGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEH--PKYIFSGH----VTEDGQYLVMCIEENCDPVNKVYYCD 275 (732)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~--~~~~~~~~----~SpDg~~l~~~~~~~~~~~~~l~~~d 275 (732)
..|.+|++.++.... ..+..... ......+. |+|++++|+....+ ..|.++|
T Consensus 139 ----------------~~i~vwd~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d-----~~i~i~d 196 (357)
T 3i2n_A 139 ----------------GTVKVWDPRQKDDPV-ANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDN-----GDIKLFD 196 (357)
T ss_dssp ----------------SCEEEECTTSCSSCS-EEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETT-----SEEEEEE
T ss_pred ----------------CeEEEEeCCCCCCcc-eeccccCCCCCCceEEEEEEeccCCCCCEEEEEccC-----CeEEEEE
Confidence 358888887764222 22322111 11233444 88999998876533 3488899
Q ss_pred CCCCCCCcccccccCCCCCcEEeeeccc-ceEEEEEe---cCCeEEEEeCCCCCCceEEEEeCCCCCCceEec-----cC
Q 004766 276 LSALPEGLEGFKKRDGLLPFVKLIDGFD-AQYEVIAN---DDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVI-----PE 346 (732)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~s~---dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~-----~~ 346 (732)
+.++. ......... .....|+| +++.|+..+.. ..|..+|+.++.....+. .+
T Consensus 197 ~~~~~--------------~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~~~ 258 (357)
T 3i2n_A 197 LRNMA--------------LRWETNIKNGVCSLEFDRKDISMNKLVATSLE----GKFHVFDMRTQHPTKGFASVSEKAH 258 (357)
T ss_dssp TTTTE--------------EEEEEECSSCEEEEEESCSSSSCCEEEEEEST----TEEEEEEEEEEETTTEEEEEEEECC
T ss_pred CccCc--------------eeeecCCCCceEEEEcCCCCCCCCEEEEECCC----CeEEEEeCcCCCcccceeeeccCCC
Confidence 88742 111111111 11225888 78877765442 367777776543222221 33
Q ss_pred CCCCceeEEEEecCCE-EEEEEecCCeeEEEEEeCCCCce-------------------eeecccccceeeEeecccCCc
Q 004766 347 AERDVLESATAVNLNQ-MIVSYLSDVKYVLQIRDLKNGSL-------------------LHQLPIEIGSVNAISARREDS 406 (732)
Q Consensus 347 ~~~~~l~~~~~~~~~~-l~~~~~~~g~~~l~~~d~~~g~~-------------------~~~l~~~~g~v~~~~~s~d~~ 406 (732)
...+..+.+++++. ++++...++ .|++||+.++.. +..+....+.+..+.++++++
T Consensus 259 --~~~v~~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 334 (357)
T 3i2n_A 259 --KSTVWQVRHLPQNRELFLTAGGAG--GLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKR 334 (357)
T ss_dssp --SSCEEEEEEETTEEEEEEEEETTS--EEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSST
T ss_pred --cCCEEEEEECCCCCcEEEEEeCCC--cEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCC
Confidence 35688899998655 778887775 677788764432 122333355677888999998
Q ss_pred EEEEEEecCCCCceEEEEECCCC
Q 004766 407 VVFISFTSFLIPGIVYQCNLKTE 429 (732)
Q Consensus 407 ~l~~~~ss~~~p~~~y~~d~~~~ 429 (732)
.++++.+. -..+..||+.+.
T Consensus 335 ~l~~s~~~---d~~i~iw~~~~~ 354 (357)
T 3i2n_A 335 GLCVCSSF---DQTVRVLIVTKL 354 (357)
T ss_dssp TEEEEEET---TSEEEEEEECC-
T ss_pred eEEEEecC---CCcEEEEECCCc
Confidence 77655543 246888887654
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.99 E-value=6.9e-08 Score=104.64 Aligned_cols=243 Identities=11% Similarity=0.085 Sum_probs=140.6
Q ss_pred EEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCce-----------ecc-cccc------------eeeeeEEEEeC
Q 004766 133 ALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIV-----------EAD-ALSW------------FKFSSIAWTHD 188 (732)
Q Consensus 133 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~-----------~~~-~~~~------------~~~~~~~WspD 188 (732)
.+..++|||||++||.... ...|+|||+.+++. +.. .... .....++|+|+
T Consensus 30 ~V~~v~~s~~g~~la~g~~-----dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~ 104 (447)
T 3dw8_B 30 IISTVEFNHSGELLATGDK-----GGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQ 104 (447)
T ss_dssp SEEEEEECSSSSEEEEEET-----TSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCC
T ss_pred cEEEEEECCCCCEEEEEcC-----CCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCC
Confidence 3678999999999987642 24799999987762 111 1111 22477999999
Q ss_pred C--cEEEEEEecCCCCCCCCCCCCcccCCcccEEEEEECCCCCCC-----------------------------------
Q 004766 189 S--KGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSE----------------------------------- 231 (732)
Q Consensus 189 g--~~l~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~----------------------------------- 231 (732)
+ ..|+....+. .|.+|++.++...
T Consensus 105 ~~~~~l~s~s~d~-------------------~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 165 (447)
T 3dw8_B 105 KNAAQFLLSTNDK-------------------TIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVE 165 (447)
T ss_dssp CSSSEEEEEECSS-------------------CEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEE
T ss_pred CCcceEEEeCCCC-------------------eEEEEecccccCCcceecccCccccccCcccccceEeccccchheeee
Confidence 8 6777665432 3555555431100
Q ss_pred --CeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCCCCcEEe------eeccc
Q 004766 232 --DILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKL------IDGFD 303 (732)
Q Consensus 232 --~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l------~~~~~ 303 (732)
...++.. .+...+..++|+|||++|+.. .+ ..|.++|+.... .....+ ..+..
T Consensus 166 ~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~-~d-----~~i~iwd~~~~~------------~~~~~~~~~~~~~~~~~ 226 (447)
T 3dw8_B 166 ASPRRIFAN-AHTYHINSISINSDYETYLSA-DD-----LRINLWHLEITD------------RSFNIVDIKPANMEELT 226 (447)
T ss_dssp EEEEEEECS-CCSSCCCEEEECTTSSEEEEE-CS-----SEEEEEETTEEE------------EEEEEEECCCSSGGGCC
T ss_pred ccceEEecc-CCCcceEEEEEcCCCCEEEEe-CC-----CeEEEEECCCCC------------ceeeeeecccccccccC
Confidence 0001111 122345578999999998754 32 347888887311 001111 01111
Q ss_pred ce--EEEEEecC-CeEEEEeCCCCCCceEEEEeCCCCCC----ceEeccCCCC-----------CceeEEEEecCCEEEE
Q 004766 304 AQ--YEVIANDD-TVFTFLTNKDAPKYKIIRVDLKEPND----WFEVIPEAER-----------DVLESATAVNLNQMIV 365 (732)
Q Consensus 304 ~~--~~~~s~dg-~~l~~~s~~~~~~~~l~~~d~~~~~~----~~~l~~~~~~-----------~~l~~~~~~~~~~l~~ 365 (732)
.. ...|+|+| ..|+..+. ...|..+|+.++.. ...+..+. . ..+..+.+++++.+++
T Consensus 227 ~~v~~~~~~p~~~~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~s~~g~~l~ 301 (447)
T 3dw8_B 227 EVITAAEFHPNSCNTFVYSSS----KGTIRLCDMRASALCDRHSKLFEEPE-DPSNRSFFSEIISSISDVKFSHSGRYMM 301 (447)
T ss_dssp CCEEEEEECSSCTTEEEEEET----TSCEEEEETTTCSSSCTTCEEECCC------CCHHHHHTTCEEEEEECTTSSEEE
T ss_pred cceEEEEECCCCCcEEEEEeC----CCeEEEEECcCCccccceeeEeccCC-CccccccccccCceEEEEEECCCCCEEE
Confidence 11 22589998 55555443 23688889887652 23333332 1 1688899998766666
Q ss_pred EEecCCeeEEEEEeCCC-Cceeeecccccce---------------eeEeecccCCcEEEEEEecCCCCceEEEEECCCC
Q 004766 366 SYLSDVKYVLQIRDLKN-GSLLHQLPIEIGS---------------VNAISARREDSVVFISFTSFLIPGIVYQCNLKTE 429 (732)
Q Consensus 366 ~~~~~g~~~l~~~d~~~-g~~~~~l~~~~g~---------------v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~ 429 (732)
.... ..|.+||+.+ ++.+..+..+... +..+.++++++.++ +.+ .-..++.||+.++
T Consensus 302 ~~~~---~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~-s~s---~dg~v~iwd~~~~ 374 (447)
T 3dw8_B 302 TRDY---LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVM-TGS---YNNFFRMFDRNTK 374 (447)
T ss_dssp EEES---SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEE-EEC---STTEEEEEETTTC
T ss_pred EeeC---CeEEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCCCEEE-Eec---cCCEEEEEEcCCC
Confidence 6555 4799999975 6554445433211 11267889988663 333 2368999999988
Q ss_pred C
Q 004766 430 T 430 (732)
Q Consensus 430 ~ 430 (732)
+
T Consensus 375 ~ 375 (447)
T 3dw8_B 375 R 375 (447)
T ss_dssp C
T ss_pred c
Confidence 5
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.99 E-value=7.7e-08 Score=111.05 Aligned_cols=242 Identities=11% Similarity=0.043 Sum_probs=150.7
Q ss_pred CCEEEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCcee-----c-ccccceeeeeEEEEeCCcEEEEEEecCCCCC
Q 004766 130 GTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVE-----A-DALSWFKFSSIAWTHDSKGFFYSRYPAPKEG 203 (732)
Q Consensus 130 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~-----~-~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~ 203 (732)
+.-.+..++|+|++..++++.+.+ .+|++||+.++... . ..........++|+|||+.|+..+.+
T Consensus 381 H~~~V~~v~~~~~~~~~l~s~s~D----~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~D----- 451 (694)
T 3dm0_A 381 HTDMVTAIATPIDNADIIVSASRD----KSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWD----- 451 (694)
T ss_dssp CSSCEEEEECCTTCCSEEEEEETT----SEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETT-----
T ss_pred CCceeEEEEecCCCCCEEEEEeCC----CcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCC-----
Confidence 344577889999875444444333 48999999764311 1 11111124789999999988876533
Q ss_pred CCCCCCCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCc
Q 004766 204 KDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGL 283 (732)
Q Consensus 204 ~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~ 283 (732)
..|.+|++.++... ..+.. +...+.+++|||||++|+..+.++. |.++|+.+..
T Consensus 452 --------------g~v~vwd~~~~~~~--~~~~~--h~~~v~~~~~s~~~~~l~s~s~D~~-----i~iwd~~~~~--- 505 (694)
T 3dm0_A 452 --------------GELRLWDLAAGVST--RRFVG--HTKDVLSVAFSLDNRQIVSASRDRT-----IKLWNTLGEC--- 505 (694)
T ss_dssp --------------SEEEEEETTTTEEE--EEEEC--CSSCEEEEEECTTSSCEEEEETTSC-----EEEECTTSCE---
T ss_pred --------------CcEEEEECCCCcce--eEEeC--CCCCEEEEEEeCCCCEEEEEeCCCE-----EEEEECCCCc---
Confidence 36899999775322 22222 3345678999999999876654433 6777765421
Q ss_pred ccccccCCCCCcEEeee---cccc--eEEEEEecCCe-EEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEE
Q 004766 284 EGFKKRDGLLPFVKLID---GFDA--QYEVIANDDTV-FTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATA 357 (732)
Q Consensus 284 ~~~~~~~~~~~~~~l~~---~~~~--~~~~~s~dg~~-l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~ 357 (732)
...+.. +... ....|+|++.. +++.... ...|..+|+.+......+..+. ..+..+.+
T Consensus 506 -----------~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~---d~~v~vwd~~~~~~~~~~~~h~--~~v~~v~~ 569 (694)
T 3dm0_A 506 -----------KYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASW---DKTVKVWNLSNCKLRSTLAGHT--GYVSTVAV 569 (694)
T ss_dssp -----------EEEECSSTTSCSSCEEEEEECSCSSSCEEEEEET---TSCEEEEETTTCCEEEEECCCS--SCEEEEEE
T ss_pred -----------ceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeC---CCeEEEEECCCCcEEEEEcCCC--CCEEEEEE
Confidence 111111 1111 12247887642 3333332 2358888988776344454444 56888999
Q ss_pred ecCCEEEEEEecCCeeEEEEEeCCCCceeeecccccceeeEeecccCCcEEEEEEecCCCCceEEEEECCCCC
Q 004766 358 VNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 430 (732)
Q Consensus 358 ~~~~~l~~~~~~~g~~~l~~~d~~~g~~~~~l~~~~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~~ 430 (732)
++++.++++...++ .|++||+.+++.+..+.. ...+..+.+++++..+... +. ..+..+|+.+++
T Consensus 570 spdg~~l~sg~~Dg--~i~iwd~~~~~~~~~~~~-~~~v~~~~~sp~~~~l~~~-~~----~~i~iwd~~~~~ 634 (694)
T 3dm0_A 570 SPDGSLCASGGKDG--VVLLWDLAEGKKLYSLEA-NSVIHALCFSPNRYWLCAA-TE----HGIKIWDLESKS 634 (694)
T ss_dssp CTTSSEEEEEETTS--BCEEEETTTTEEEECCBC-SSCEEEEEECSSSSEEEEE-ET----TEEEEEETTTTE
T ss_pred eCCCCEEEEEeCCC--eEEEEECCCCceEEEecC-CCcEEEEEEcCCCcEEEEE-cC----CCEEEEECCCCC
Confidence 98777888888875 688999988876555543 3456778888888654432 22 358999998774
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=98.99 E-value=3.4e-07 Score=94.89 Aligned_cols=243 Identities=12% Similarity=0.043 Sum_probs=144.3
Q ss_pred CCCEEEEeEEECCCC-cEEEEEEeccCCceEEEEEEECCCCceec----ccc--cceeeeeEEEEeCCcEEEEEEecCCC
Q 004766 129 DGTAALIKVSVSEDA-KYLAYALSYSGSDWATIKLMRIEDQIVEA----DAL--SWFKFSSIAWTHDSKGFFYSRYPAPK 201 (732)
Q Consensus 129 ~~~~~~~~~~~SPDG-~~la~~~~~~G~e~~~i~v~dl~~g~~~~----~~~--~~~~~~~~~WspDg~~l~y~~~~~~~ 201 (732)
++.-.+..++||||+ ++|| +.+.+ .+|+|||+.+++... ... .......++|+|||+.|+....+
T Consensus 36 GH~~~V~~v~~sp~~~~~l~-S~s~D----~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d--- 107 (340)
T 4aow_A 36 GHNGWVTQIATTPQFPDMIL-SASRD----KTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWD--- 107 (340)
T ss_dssp CCSSCEEEEEECTTCTTEEE-EEETT----SCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETT---
T ss_pred CccCCEEEEEEeCCCCCEEE-EEcCC----CeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEccc---
Confidence 344567899999984 6665 33222 479999998765211 111 11234789999999988876533
Q ss_pred CCCCCCCCCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCC
Q 004766 202 EGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPE 281 (732)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~ 281 (732)
..|+.++....... ..... .........+++++++|+..+.++ .+.++|+....
T Consensus 108 ----------------~~i~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~l~s~s~d~-----~~~~~d~~~~~- 161 (340)
T 4aow_A 108 ----------------GTLRLWDLTTGTTT--RRFVG--HTKDVLSVAFSSDNRQIVSGSRDK-----TIKLWNTLGVC- 161 (340)
T ss_dssp ----------------SEEEEEETTTTEEE--EEEEC--CSSCEEEEEECTTSSCEEEEETTS-----CEEEECTTSCE-
T ss_pred ----------------ccceEEeeccccee--eeecC--CCCceeEEEEeecCccceeecCCC-----eEEEEEeCCCc-
Confidence 35777877654321 12222 122345678899999987665433 26667765421
Q ss_pred CcccccccCCCCCcEEeeecccce--EEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEec
Q 004766 282 GLEGFKKRDGLLPFVKLIDGFDAQ--YEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVN 359 (732)
Q Consensus 282 ~~~~~~~~~~~~~~~~l~~~~~~~--~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~ 359 (732)
............ ...+++++...++++.. ....|..+|+.++.....+..+. ..+..+.+++
T Consensus 162 ------------~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~--~d~~i~i~d~~~~~~~~~~~~h~--~~v~~~~~s~ 225 (340)
T 4aow_A 162 ------------KYTVQDESHSEWVSCVRFSPNSSNPIIVSCG--WDKLVKVWNLANCKLKTNHIGHT--GYLNTVTVSP 225 (340)
T ss_dssp ------------EEEECSSSCSSCEEEEEECSCSSSCEEEEEE--TTSCEEEEETTTTEEEEEECCCS--SCEEEEEECT
T ss_pred ------------eEEEEeccccCcccceEEccCCCCcEEEEEc--CCCEEEEEECCCCceeeEecCCC--CcEEEEEECC
Confidence 011111111111 22466666544433321 13458888988776344444443 5688899998
Q ss_pred CCEEEEEEecCCeeEEEEEeCCCCceeeecccccceeeEeecccCCcEEEEEEecCCCCceEEEEECCCC
Q 004766 360 LNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTE 429 (732)
Q Consensus 360 ~~~l~~~~~~~g~~~l~~~d~~~g~~~~~l~~~~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~ 429 (732)
++.++++...++ .|.+||+.+++.+..+.. ...+..+.+++++..+ .... -..+..+|+.++
T Consensus 226 ~~~~l~s~s~Dg--~i~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~~-~~~~----d~~i~iwd~~~~ 287 (340)
T 4aow_A 226 DGSLCASGGKDG--QAMLWDLNEGKHLYTLDG-GDIINALCFSPNRYWL-CAAT----GPSIKIWDLEGK 287 (340)
T ss_dssp TSSEEEEEETTC--EEEEEETTTTEEEEEEEC-SSCEEEEEECSSSSEE-EEEE----TTEEEEEETTTT
T ss_pred CCCEEEEEeCCC--eEEEEEeccCceeeeecC-CceEEeeecCCCCcee-eccC----CCEEEEEECCCC
Confidence 777888887774 788999987776555543 3345667777776533 2222 257889998776
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=98.99 E-value=8.7e-08 Score=102.55 Aligned_cols=245 Identities=11% Similarity=0.037 Sum_probs=145.3
Q ss_pred eEEECCCCcEEEEEEeccCCceEEEEEEECCCCcee-c----ccccceeeeeEEEEe-CCcEEEEEEecCCCCCCCCCCC
Q 004766 136 KVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVE-A----DALSWFKFSSIAWTH-DSKGFFYSRYPAPKEGKDMDAG 209 (732)
Q Consensus 136 ~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~-~----~~~~~~~~~~~~Wsp-Dg~~l~y~~~~~~~~~~~~~~~ 209 (732)
.+.++|+...+++... + ...|+|||+.....+ . ..........++|+| |++.|+....+
T Consensus 39 ~~~~~~~~~~~~~~~~--~--~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~d----------- 103 (402)
T 2aq5_A 39 FCAVNPKFMALICEAS--G--GGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSED----------- 103 (402)
T ss_dssp SEEECSSEEEEEBCCS--S--SCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETT-----------
T ss_pred cEEECCCeEEEEEEEc--C--CCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCC-----------
Confidence 4678887654443322 2 247999999654322 1 111122357899999 88877776533
Q ss_pred CcccCCcccEEEEEECCCCCC-----CCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcc
Q 004766 210 TETDSNLYHEFYYHFLGTKQS-----EDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLE 284 (732)
Q Consensus 210 ~~~~~~~~~~v~~~~lgt~~~-----~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~ 284 (732)
..|.+|++.++.. +.+..+.. +...+..+.|+|+|+.++++.... ..|.++|+.++.
T Consensus 104 --------g~v~vw~~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~~p~~~~~l~s~~~d----g~i~iwd~~~~~---- 165 (402)
T 2aq5_A 104 --------CTVMVWEIPDGGLVLPLREPVITLEG--HTKRVGIVAWHPTAQNVLLSAGCD----NVILVWDVGTGA---- 165 (402)
T ss_dssp --------SEEEEEECCTTCCSSCBCSCSEEEEC--CSSCEEEEEECSSBTTEEEEEETT----SCEEEEETTTTE----
T ss_pred --------CeEEEEEccCCCCccccCCceEEecC--CCCeEEEEEECcCCCCEEEEEcCC----CEEEEEECCCCC----
Confidence 3688899877532 22233332 234567899999995444443322 238888987642
Q ss_pred cccccCCCCCcEEee-ecccceE--EEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEe-ccCCCCCceeEEEEecC
Q 004766 285 GFKKRDGLLPFVKLI-DGFDAQY--EVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEV-IPEAERDVLESATAVNL 360 (732)
Q Consensus 285 ~~~~~~~~~~~~~l~-~~~~~~~--~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l-~~~~~~~~l~~~~~~~~ 360 (732)
....+. ......+ ..|+|+|+.|+..+. ...|..+|+.++.....+ ..+. ...+..+.++++
T Consensus 166 ---------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d~~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 231 (402)
T 2aq5_A 166 ---------AVLTLGPDVHPDTIYSVDWSRDGALICTSCR----DKRVRVIEPRKGTVVAEKDRPHE-GTRPVHAVFVSE 231 (402)
T ss_dssp ---------EEEEECTTTCCSCEEEEEECTTSSCEEEEET----TSEEEEEETTTTEEEEEEECSSC-SSSCCEEEECST
T ss_pred ---------ccEEEecCCCCCceEEEEECCCCCEEEEEec----CCcEEEEeCCCCceeeeeccCCC-CCcceEEEEcCC
Confidence 122221 1111122 258999988876554 347999999887633444 2333 334677888887
Q ss_pred CEEEEEEec-CCeeEEEEEeCCCCce-eeecccc-cceeeEeecccCCcEEEEEEecCCCCceEEEEECCCCC
Q 004766 361 NQMIVSYLS-DVKYVLQIRDLKNGSL-LHQLPIE-IGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 430 (732)
Q Consensus 361 ~~l~~~~~~-~g~~~l~~~d~~~g~~-~~~l~~~-~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~~ 430 (732)
+.+++.... .....|.+||+.+++. ......+ ...+..+.++++++.++++.+. -..+..||+.+++
T Consensus 232 ~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~---dg~i~i~d~~~~~ 301 (402)
T 2aq5_A 232 GKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKG---DSSIRYFEITSEA 301 (402)
T ss_dssp TEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETT---CSCEEEEEECSST
T ss_pred CcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcC---CCeEEEEEecCCC
Confidence 777766521 2236899999986553 2223322 3456677888999877655432 2468888887764
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=98.99 E-value=2.1e-08 Score=105.30 Aligned_cols=250 Identities=10% Similarity=0.024 Sum_probs=141.6
Q ss_pred EEEeEEECCC----CcEEEEEEeccCCceEEEEEEECCCCceecccc-cceeeeeEEEEe-CCcEEEEEEecCCCCCCCC
Q 004766 133 ALIKVSVSED----AKYLAYALSYSGSDWATIKLMRIEDQIVEADAL-SWFKFSSIAWTH-DSKGFFYSRYPAPKEGKDM 206 (732)
Q Consensus 133 ~~~~~~~SPD----G~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~-~~~~~~~~~Wsp-Dg~~l~y~~~~~~~~~~~~ 206 (732)
.+..+.|||+ |++|+... . ...|++||+.+++.+.... .......++|+| |++.|+....+
T Consensus 71 ~v~~~~~~~~~~~~~~~l~~~~-~----dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~d-------- 137 (366)
T 3k26_A 71 NFYTCAWTYDSNTSHPLLAVAG-S----RGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKD-------- 137 (366)
T ss_dssp CEEEEEEEECTTTCCEEEEEEE-T----TCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETT--------
T ss_pred cEEEEEeccCCCCCCCEEEEec-C----CCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCC--------
Confidence 4678899999 66776553 2 2489999999988553221 222357899999 88877776533
Q ss_pred CCCCcccCCcccEEEEEECCCCCCCCeEEEec-CCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCC--c
Q 004766 207 DAGTETDSNLYHEFYYHFLGTKQSEDILCWKD-PEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEG--L 283 (732)
Q Consensus 207 ~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~-~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~--~ 283 (732)
..|++|++.++.. +..+.. ..+...+..+.|+|||++|+....++ .|.++|+.++... +
T Consensus 138 -----------g~i~iwd~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~ 199 (366)
T 3k26_A 138 -----------HALRLWNIQTDTL--VAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDH-----SLKLWRINSKRMMNAI 199 (366)
T ss_dssp -----------SCEEEEETTTTEE--EEEECSTTSCSSCEEEEEECTTSSEEEEEETTS-----CEEEEESCSHHHHHHH
T ss_pred -----------CeEEEEEeecCeE--EEEecccccccCceeEEEECCCCCEEEEecCCC-----CEEEEECCCCcccccc
Confidence 3588999876531 222211 22344567899999999987765433 3788888753210 0
Q ss_pred c---cccccCCCCCc---------EEeeecccceE--EEEEecCCeEEEEeCCCCCCceEEEEeCCCCCC----------
Q 004766 284 E---GFKKRDGLLPF---------VKLIDGFDAQY--EVIANDDTVFTFLTNKDAPKYKIIRVDLKEPND---------- 339 (732)
Q Consensus 284 ~---~~~~~~~~~~~---------~~l~~~~~~~~--~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~---------- 339 (732)
. .+.++...... ..........+ ..|+ ++.++..+. ...|..+|+.+...
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~----d~~i~~wd~~~~~~~~~~~~~~~~ 273 (366)
T 3k26_A 200 KESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSC----ENAIVCWKPGKMEDDIDKIKPSES 273 (366)
T ss_dssp HHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECS----SSEEEEEEESSTTCCGGGCCTTCC
T ss_pred ceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEec----CCEEEEEeCCCccccccccccCCc
Confidence 0 00000000000 00000011111 1244 565544332 34677788766531
Q ss_pred ----ceEeccCCCCCceeEEEEecC--CEEEEEEecCCeeEEEEEeCCCCceee----ecccc--cceeeEeecccCCcE
Q 004766 340 ----WFEVIPEAERDVLESATAVNL--NQMIVSYLSDVKYVLQIRDLKNGSLLH----QLPIE--IGSVNAISARREDSV 407 (732)
Q Consensus 340 ----~~~l~~~~~~~~l~~~~~~~~--~~l~~~~~~~g~~~l~~~d~~~g~~~~----~l~~~--~g~v~~~~~s~d~~~ 407 (732)
...+..+. ..+..+.++++ +.++++...++ .|++||+.+++... .+..+ .+.+..+.++++++.
T Consensus 274 ~~~~~~~~~~~~--~~v~~~~~s~~~~~~~l~~~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 349 (366)
T 3k26_A 274 NVTILGRFDYSQ--CDIWYMRFSMDFWQKMLALGNQVG--KLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSI 349 (366)
T ss_dssp CEEEEEEEECSS--CCSSCCCCEECTTSSEEEEECTTS--CEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSE
T ss_pred chheeccccccC--CcEEEEEEcCCCCCcEEEEEecCC--cEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCe
Confidence 11121121 33555667765 67777777774 68999998775422 34433 467888899999886
Q ss_pred EEEEEecCCCCceEEEEECC
Q 004766 408 VFISFTSFLIPGIVYQCNLK 427 (732)
Q Consensus 408 l~~~~ss~~~p~~~y~~d~~ 427 (732)
++.. +. -..++.||+.
T Consensus 350 l~s~-~~---dg~i~iwd~~ 365 (366)
T 3k26_A 350 LIAV-CD---DASIWRWDRL 365 (366)
T ss_dssp EEEE-ET---TSEEEEEEC-
T ss_pred EEEE-eC---CCEEEEEEec
Confidence 6533 22 2578888764
|
| >3ils_A PKS, aflatoxin biosynthesis polyketide synthase; A/B hydrolase, thioesterase, norsolorinic acid, P polyketide, acyltransferase; 1.70A {Aspergillus parasiticus} | Back alignment and structure |
|---|
Probab=98.98 E-value=1.7e-09 Score=108.85 Aligned_cols=100 Identities=10% Similarity=0.010 Sum_probs=66.6
Q ss_pred CCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCccHHHHHHHHHHHHHHcCCC
Q 004766 479 GSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYT 558 (732)
Q Consensus 479 ~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~ 558 (732)
+..|.||++||+.+... .|.. +.. |. .||.|+.+|+||.+.. .....+++++.+.+..+++.- .
T Consensus 19 ~~~~~lv~lhg~~~~~~--~~~~-~~~-l~-~~~~v~~~d~~G~~~~----------~~~~~~~~~~~~~~~~~i~~~-~ 82 (265)
T 3ils_A 19 VARKTLFMLPDGGGSAF--SYAS-LPR-LK-SDTAVVGLNCPYARDP----------ENMNCTHGAMIESFCNEIRRR-Q 82 (265)
T ss_dssp TSSEEEEEECCTTCCGG--GGTT-SCC-CS-SSEEEEEEECTTTTCG----------GGCCCCHHHHHHHHHHHHHHH-C
T ss_pred CCCCEEEEECCCCCCHH--HHHH-HHh-cC-CCCEEEEEECCCCCCC----------CCCCCCHHHHHHHHHHHHHHh-C
Confidence 56688999999977643 3333 223 55 8999999999995321 111234555554443333321 1
Q ss_pred CCCcEEEEecChhHHHHHHHHh---hCCCeeeEEEEcCC
Q 004766 559 QSRKLCIEGGSNGGLLVGACIN---QRPDLFGCALAHVG 594 (732)
Q Consensus 559 d~~~i~i~G~S~GG~l~~~~~~---~~p~~f~a~v~~~p 594 (732)
..+++.++|||+||+++..++. .+|+..+.+|+..+
T Consensus 83 ~~~~~~l~GhS~Gg~ia~~~a~~l~~~~~~v~~lvl~~~ 121 (265)
T 3ils_A 83 PRGPYHLGGWSSGGAFAYVVAEALVNQGEEVHSLIIIDA 121 (265)
T ss_dssp SSCCEEEEEETHHHHHHHHHHHHHHHTTCCEEEEEEESC
T ss_pred CCCCEEEEEECHhHHHHHHHHHHHHhCCCCceEEEEEcC
Confidence 2258999999999999999887 67888888876654
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=98.98 E-value=5.3e-08 Score=101.19 Aligned_cols=210 Identities=11% Similarity=0.005 Sum_probs=115.8
Q ss_pred EEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCc---eecccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCC
Q 004766 134 LIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQI---VEADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGT 210 (732)
Q Consensus 134 ~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~---~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~ 210 (732)
...++|||||++|+++...+ ..|++||+..|. .+...........++|+|||+.|+++..
T Consensus 86 ~~~~~~s~dg~~l~~~~~~~----~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~------------- 148 (343)
T 1ri6_A 86 LTHISTDHQGQFVFVGSYNA----GNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPAL------------- 148 (343)
T ss_dssp CSEEEECTTSSEEEEEETTT----TEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEG-------------
T ss_pred CcEEEEcCCCCEEEEEecCC----CeEEEEECCCCccccccccccCCCCceEEEECCCCCEEEEecC-------------
Confidence 34788999999987775322 268899984332 2221111112467899999998877641
Q ss_pred cccCCcccEEEEEECCC-CCCCCeE--EEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCccccc
Q 004766 211 ETDSNLYHEFYYHFLGT-KQSEDIL--CWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFK 287 (732)
Q Consensus 211 ~~~~~~~~~v~~~~lgt-~~~~~~~--v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~ 287 (732)
....|+++++.+ +...... ...... ......+.|+|||++|++.... ...+.++++......
T Consensus 149 -----~~~~v~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~pdg~~l~~~~~~----~~~i~~~~~~~~~g~----- 213 (343)
T 1ri6_A 149 -----KQDRICLFTVSDDGHLVAQDPAEVTTVE-GAGPRHMVFHPNEQYAYCVNEL----NSSVDVWELKDPHGN----- 213 (343)
T ss_dssp -----GGTEEEEEEECTTSCEEEEEEEEEECST-TCCEEEEEECTTSSEEEEEETT----TTEEEEEESSCTTSC-----
T ss_pred -----CCCEEEEEEecCCCceeeecccccccCC-CCCcceEEECCCCCEEEEEeCC----CCEEEEEEecCCCCc-----
Confidence 234688888875 3221111 222222 1234578999999998776532 245777787431100
Q ss_pred ccCCCCCcEEee---eccc----ceEEEEEecCCeEEEEeCCCCCCceEEEEeCC--CCCCceEe--ccCCCCCceeEEE
Q 004766 288 KRDGLLPFVKLI---DGFD----AQYEVIANDDTVFTFLTNKDAPKYKIIRVDLK--EPNDWFEV--IPEAERDVLESAT 356 (732)
Q Consensus 288 ~~~~~~~~~~l~---~~~~----~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~--~~~~~~~l--~~~~~~~~l~~~~ 356 (732)
........ .+.. .....|+|||+.|++.... ...|.+++++ ++. .+.+ ++.. ..+..+.
T Consensus 214 ----~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~---~~~i~v~d~~~~~~~-~~~~~~~~~~--~~~~~~~ 283 (343)
T 1ri6_A 214 ----IECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRT---ASLITVFSVSEDGSV-LSKEGFQPTE--TQPRGFN 283 (343)
T ss_dssp ----CEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETT---TTEEEEEEECTTSCC-EEEEEEEECS--SSCCCEE
T ss_pred ----EEEEeeccccCccccccCCccceEECCCCCEEEEEecC---CCEEEEEEEcCCCCc-eEEeeeecCC--CccceEE
Confidence 00011111 0100 1123589999988765432 2457777766 333 2222 2222 2266788
Q ss_pred EecCCE-EEEEEecCCeeEEEEEeCCCCce
Q 004766 357 AVNLNQ-MIVSYLSDVKYVLQIRDLKNGSL 385 (732)
Q Consensus 357 ~~~~~~-l~~~~~~~g~~~l~~~d~~~g~~ 385 (732)
+++++. +++....++.-.++.+|.++|+.
T Consensus 284 ~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~ 313 (343)
T 1ri6_A 284 VDHSGKYLIAAGQKSHHISVYEIVGEQGLL 313 (343)
T ss_dssp ECTTSSEEEEECTTTCEEEEEEEETTTTEE
T ss_pred ECCCCCEEEEecCCCCeEEEEEEcCCCcee
Confidence 887654 55554455544555557766654
|
| >1kez_A Erythronolide synthase; polyketide synthase, modular polyketide synthase, thioesterase, 6-DEB, TE, DEBS, alpha, beta-hydrolase; 2.80A {Saccharopolyspora erythraea} SCOP: c.69.1.22 PDB: 1mo2_A | Back alignment and structure |
|---|
Probab=98.97 E-value=1.5e-09 Score=111.52 Aligned_cols=206 Identities=11% Similarity=-0.083 Sum_probs=118.7
Q ss_pred CCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCccHHHHHHHHHH-HHHHcC
Q 004766 478 DGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASE-YLISAG 556 (732)
Q Consensus 478 ~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~-~l~~~~ 556 (732)
.+..|.||++||..+......|.. +...|. .+|.|+.+|+||.|.... ...+++++.+.+. .+.+.
T Consensus 64 ~~~~~~lvllhG~~~~~~~~~~~~-~~~~l~-~~~~v~~~d~~G~G~s~~----------~~~~~~~~a~~~~~~l~~~- 130 (300)
T 1kez_A 64 GPGEVTVICCAGTAAISGPHEFTR-LAGALR-GIAPVRAVPQPGYEEGEP----------LPSSMAAVAAVQADAVIRT- 130 (300)
T ss_dssp CSCSSEEEECCCSSTTCSTTTTHH-HHHHTS-SSCCBCCCCCTTSSTTCC----------BCSSHHHHHHHHHHHHHHH-
T ss_pred CCCCCeEEEECCCcccCcHHHHHH-HHHhcC-CCceEEEecCCCCCCCCC----------CCCCHHHHHHHHHHHHHHh-
Confidence 356789999999876542234443 445566 679999999999775211 1235566665544 44443
Q ss_pred CCCCCcEEEEecChhHHHHHHHHhhCC---CeeeEEEEcCCcccccc-ccc-C--CCCCccccccCCCCCHHHHHHHHh-
Q 004766 557 YTQSRKLCIEGGSNGGLLVGACINQRP---DLFGCALAHVGVMDMLR-YHK-F--TIGHAWVSDFGCSEEEEEFYWLIK- 628 (732)
Q Consensus 557 ~~d~~~i~i~G~S~GG~l~~~~~~~~p---~~f~a~v~~~p~~d~~~-~~~-~--~~~~~~~~~~g~p~~~~~~~~~~~- 628 (732)
.+.+++.++|+|+||.++..++.++| +.++++|+..+...... ... + .....+......+........+..
T Consensus 131 -~~~~~~~LvGhS~GG~vA~~~A~~~p~~g~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (300)
T 1kez_A 131 -QGDKPFVVAGHSAGALMAYALATELLDRGHPPRGVVLIDVYPPGHQDAMNAWLEELTATLFDRETVRMDDTRLTALGAY 209 (300)
T ss_dssp -CSSCCEEEECCTHHHHHHHHHHHHTTTTTCCCSEEECBTCCCTTTCHHHHHHHHHHHGGGCCCCSSCCCHHHHHHHHHH
T ss_pred -cCCCCEEEEEECHhHHHHHHHHHHHHhcCCCccEEEEECCCCCcchhHHHHHHHHHHHHHHhCcCCccchHHHHHHHHH
Confidence 23468999999999999999999988 48899988777543211 000 0 000000000001111111111111
Q ss_pred ---cCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeCCCCCCCC
Q 004766 629 ---YSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVG 705 (732)
Q Consensus 629 ---~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~ 705 (732)
...+ ... .+..|+|+++| .|+.+++.+ .. +... -...+.++++++ ||...
T Consensus 210 ~~~~~~~-~~~----------~i~~P~lii~G-~d~~~~~~~-~~----~~~~---------~~~~~~~~~i~g-gH~~~ 262 (300)
T 1kez_A 210 DRLTGQW-RPR----------ETGLPTLLVSA-GEPMGPWPD-DS----WKPT---------WPFEHDTVAVPG-DHFTM 262 (300)
T ss_dssp HHHTTTC-CCC----------CCSCCBEEEEE-SSCSSCCCS-SC----CSCC---------CSSCCEEEEESS-CTTTS
T ss_pred HHHHhcC-CCC----------CCCCCEEEEEe-CCCCCCCcc-cc----hhhh---------cCCCCeEEEecC-CChhh
Confidence 1111 112 37889999999 577787765 22 2221 123468889999 99875
Q ss_pred C-chHHHHHHHHHHHHHHHHHh
Q 004766 706 L-PTQKMIDEAADRYGFMAKML 726 (732)
Q Consensus 706 ~-~~~~~~~~~~~~~~fl~~~l 726 (732)
. ... ....+.+.+||.+..
T Consensus 263 ~~e~~--~~~~~~i~~fl~~~~ 282 (300)
T 1kez_A 263 VQEHA--DAIARHIDAWLGGGN 282 (300)
T ss_dssp SSSCS--HHHHHHHHHHHTCC-
T ss_pred ccccH--HHHHHHHHHHHHhcc
Confidence 3 322 245556778886543
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.97 E-value=8.3e-08 Score=99.78 Aligned_cols=246 Identities=13% Similarity=0.037 Sum_probs=129.1
Q ss_pred CEEEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCc-------eecc-cccceeeeeEEEEeCCcEEEEEEecCCCC
Q 004766 131 TAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQI-------VEAD-ALSWFKFSSIAWTHDSKGFFYSRYPAPKE 202 (732)
Q Consensus 131 ~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~-------~~~~-~~~~~~~~~~~WspDg~~l~y~~~~~~~~ 202 (732)
...+..++|||||++||-... ..+|++||++++. .+.. .........++|+|||+.|+....+
T Consensus 58 ~~~v~~v~~sp~~~~las~s~-----D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D---- 128 (330)
T 2hes_X 58 KKAIRSVAWRPHTSLLAAGSF-----DSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRD---- 128 (330)
T ss_dssp CSCEEEEEECTTSSEEEEEET-----TSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETT----
T ss_pred cCCEEEEEECCCCCEEEEEeC-----CCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCC----
Confidence 345788999999998885532 2478999986432 1111 1111124789999999988877543
Q ss_pred CCCCCCCCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCC
Q 004766 203 GKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEG 282 (732)
Q Consensus 203 ~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~ 282 (732)
..|++|++........++.....+...+..+.|+|||++|+..+.++. |.+++..++.
T Consensus 129 ---------------~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~-----i~iW~~~~~~-- 186 (330)
T 2hes_X 129 ---------------KSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDT-----VRIWKDYDDD-- 186 (330)
T ss_dssp ---------------SCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSC-----EEEEEEETTE--
T ss_pred ---------------CEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCe-----EEEEECCCCC--
Confidence 358888885432222233222233445678999999999876654433 5555654321
Q ss_pred cccccccCCCCCcEEeeecccceE-EEEEec--CCeEEEEeCCCCCCceEEEEeCCCCC-----Cce--EeccCCCCCce
Q 004766 283 LEGFKKRDGLLPFVKLIDGFDAQY-EVIAND--DTVFTFLTNKDAPKYKIIRVDLKEPN-----DWF--EVIPEAERDVL 352 (732)
Q Consensus 283 ~~~~~~~~~~~~~~~l~~~~~~~~-~~~s~d--g~~l~~~s~~~~~~~~l~~~d~~~~~-----~~~--~l~~~~~~~~l 352 (732)
..+...+........ ..|+|+ +..|+..+. + ..|..+++.++. .+. ..++......+
T Consensus 187 ---------~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~-D---~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v 253 (330)
T 2hes_X 187 ---------WECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSD-D---STVRVWKYMGDDEDDQQEWVCEAILPDVHKRQV 253 (330)
T ss_dssp ---------EEEEEEECCCSSCEEEEEECCSSSSCEEEEEET-T---SCEEEEEEEEECTTSCEEEEEEEECCSCCSSCE
T ss_pred ---------eeEEEEccCCCCcEEEEEecCCCCeeEEEEEeC-C---CeEEEEEecCCCccccceeEEeeecccccccce
Confidence 011222222211222 247887 334443332 2 234445543321 111 12222123567
Q ss_pred eEEEEecCCEEEEEEecCCeeEEEEEeCCCCce--eeec-ccccc-eeeEeeccc--CCcEEEEEEecCCCCceEEEEEC
Q 004766 353 ESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSL--LHQL-PIEIG-SVNAISARR--EDSVVFISFTSFLIPGIVYQCNL 426 (732)
Q Consensus 353 ~~~~~~~~~~l~~~~~~~g~~~l~~~d~~~g~~--~~~l-~~~~g-~v~~~~~s~--d~~~l~~~~ss~~~p~~~y~~d~ 426 (732)
..+.+++ +.++++...++ .|.+|+..+++. .... ..+.. .+..+.+++ ++. ++++.+.. ..+..+|+
T Consensus 254 ~~v~~s~-~~~l~s~~~dg--~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~-~las~s~D---g~v~~W~~ 326 (330)
T 2hes_X 254 YNVAWGF-NGLIASVGADG--VLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKT-ILATGGDD---GIVNFWSL 326 (330)
T ss_dssp EEEEECT-TSCEEEEETTS--CEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----C-CEEEEETT---SEEEEEEC
T ss_pred EEEEEcC-CCEEEEEeCCC--EEEEEEcCCCceEEEeccccccccceEEEEEEecCCCce-EEEEecCC---CcEEEEEe
Confidence 8888886 44666777775 677788766642 1111 22233 577777777 454 33444432 46777776
Q ss_pred C
Q 004766 427 K 427 (732)
Q Consensus 427 ~ 427 (732)
.
T Consensus 327 ~ 327 (330)
T 2hes_X 327 E 327 (330)
T ss_dssp -
T ss_pred c
Confidence 4
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.97 E-value=1.5e-07 Score=98.74 Aligned_cols=239 Identities=10% Similarity=0.037 Sum_probs=138.1
Q ss_pred CCEEEEeEEECCC---CcEEEEEEeccCCceEEEEEEECCC-Cceecccc--cceeeeeEEEEeCCcEEEEEEecCCCCC
Q 004766 130 GTAALIKVSVSED---AKYLAYALSYSGSDWATIKLMRIED-QIVEADAL--SWFKFSSIAWTHDSKGFFYSRYPAPKEG 203 (732)
Q Consensus 130 ~~~~~~~~~~SPD---G~~la~~~~~~G~e~~~i~v~dl~~-g~~~~~~~--~~~~~~~~~WspDg~~l~y~~~~~~~~~ 203 (732)
+...+..++|||| |++|+.... + ..|++||+.+ +..+.... .......++|+||++.|+....+
T Consensus 38 h~~~v~~~~~~~~~~~g~~l~~~~~-d----g~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d----- 107 (368)
T 3mmy_A 38 PDDSIGCLSFSPPTLPGNFLIAGSW-A----NDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCD----- 107 (368)
T ss_dssp CSSCEEEEEECCTTSSSEEEEEEET-T----SEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETT-----
T ss_pred CCCceEEEEEcCCCCCceEEEEECC-C----CcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCC-----
Confidence 3345789999999 688876532 2 4799999987 55432111 22235789999999998876533
Q ss_pred CCCCCCCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEE--ecCCcEEEEEEecCCcceEEEEEEeCCCCCC
Q 004766 204 KDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHV--TEDGQYLVMCIEENCDPVNKVYYCDLSALPE 281 (732)
Q Consensus 204 ~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~--SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~ 281 (732)
..|.+|++.++... .+.. +...+..+.| +|+|++|+....+ ..|.++|+.++..
T Consensus 108 --------------g~v~iwd~~~~~~~--~~~~---~~~~v~~~~~~~~~~~~~l~~~~~d-----g~i~vwd~~~~~~ 163 (368)
T 3mmy_A 108 --------------KTAKMWDLSSNQAI--QIAQ---HDAPVKTIHWIKAPNYSCVMTGSWD-----KTLKFWDTRSSNP 163 (368)
T ss_dssp --------------SEEEEEETTTTEEE--EEEE---CSSCEEEEEEEECSSCEEEEEEETT-----SEEEEECSSCSSC
T ss_pred --------------CcEEEEEcCCCCce--eecc---ccCceEEEEEEeCCCCCEEEEccCC-----CcEEEEECCCCcE
Confidence 36889998765421 2222 2234567888 9999988766543 3478888876431
Q ss_pred CcccccccCCCCCcEEe--------eecccceE-------------------------EEEEecCCe----EEEEeCCCC
Q 004766 282 GLEGFKKRDGLLPFVKL--------IDGFDAQY-------------------------EVIANDDTV----FTFLTNKDA 324 (732)
Q Consensus 282 ~~~~~~~~~~~~~~~~l--------~~~~~~~~-------------------------~~~s~dg~~----l~~~s~~~~ 324 (732)
. ..+.. ......+ ....+... ..+.+++.. ++..+.
T Consensus 164 ~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 236 (368)
T 3mmy_A 164 M-MVLQL---PERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSI--- 236 (368)
T ss_dssp S-EEEEC---SSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEET---
T ss_pred E-EEEec---CCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecC---
Confidence 1 00000 0000000 00000000 011111111 222221
Q ss_pred CCceEEEEeCCCCC---CceEeccCCCC----------CceeEEEEecCCEEEEEEecCCeeEEEEEeCCCCceeeeccc
Q 004766 325 PKYKIIRVDLKEPN---DWFEVIPEAER----------DVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPI 391 (732)
Q Consensus 325 ~~~~l~~~d~~~~~---~~~~l~~~~~~----------~~l~~~~~~~~~~l~~~~~~~g~~~l~~~d~~~g~~~~~l~~ 391 (732)
...|..+++.... ....+..+... ..+..+.+++++.++++...++ .|++||+.+++.+..+..
T Consensus 237 -dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~ 313 (368)
T 3mmy_A 237 -EGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDG--RFSFWDKDARTKLKTSEQ 313 (368)
T ss_dssp -TSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTS--CEEEEETTTTEEEEECCC
T ss_pred -CCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCC--eEEEEECCCCcEEEEecC
Confidence 3456677776542 12223222210 1478889998777777777774 689999998887677765
Q ss_pred ccceeeEeecccCCcEEEEEE
Q 004766 392 EIGSVNAISARREDSVVFISF 412 (732)
Q Consensus 392 ~~g~v~~~~~s~d~~~l~~~~ 412 (732)
+.+.+..+.+++++..++...
T Consensus 314 ~~~~v~~~~~s~~g~~l~~~s 334 (368)
T 3mmy_A 314 LDQPISACCFNHNGNIFAYAS 334 (368)
T ss_dssp CSSCEEEEEECTTSSCEEEEE
T ss_pred CCCCceEEEECCCCCeEEEEe
Confidence 567788899999998766443
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=98.96 E-value=7.1e-07 Score=96.09 Aligned_cols=253 Identities=12% Similarity=0.031 Sum_probs=150.8
Q ss_pred eEEeCCCCcCCCCCEEEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecc---cccceeeeeEEEEeCCcEEEE
Q 004766 118 KVLLDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEAD---ALSWFKFSSIAWTHDSKGFFY 194 (732)
Q Consensus 118 ~~l~D~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~---~~~~~~~~~~~WspDg~~l~y 194 (732)
..+||.-.+..+ +.+.-+.||+++ .||...+ .+|+|||+.+|+.+.. ......+..++|+|||+.|+.
T Consensus 94 ~~~l~ap~~~~d--~y~~~l~wS~~n-~lAvgld------~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~las 164 (420)
T 4gga_A 94 DRILDAPEIRND--YYLNLVDWSSGN-VLAVALD------NSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAV 164 (420)
T ss_dssp SEEEECTTCCCC--TTCBCEEECTTS-EEEEEET------TEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEE
T ss_pred ceEEECCCCccc--ccceeEEECCCC-EEEEEeC------CEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEE
Confidence 445665444322 334568899865 7887752 2799999999985432 112223578999999999988
Q ss_pred EEecCCCCCCCCCCCCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEE
Q 004766 195 SRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYC 274 (732)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~ 274 (732)
...+. .|.+|++.++. .+.....+.... .+++.+++.|+..+.+ ..++++
T Consensus 165 gs~Dg-------------------~v~iWd~~~~~----~~~~~~~h~~~v--~~~s~~~~~l~sgs~d-----~~i~~~ 214 (420)
T 4gga_A 165 GTSSA-------------------EVQLWDVQQQK----RLRNMTSHSARV--GSLSWNSYILSSGSRS-----GHIHHH 214 (420)
T ss_dssp EETTS-------------------CEEEEETTTTE----EEEEECCCSSCE--EEEEEETTEEEEEETT-----SEEEEE
T ss_pred EECCC-------------------eEEEEEcCCCc----EEEEEeCCCCce--EEEeeCCCEEEEEeCC-----CceeEe
Confidence 75433 58889987653 232222233333 3456678877654432 346777
Q ss_pred eCCCCCCCcccccccCCCCCcEEeeecccce-EEEEEecCCeEEEEeCCCCCCceEEEEeCCCCC----CceEeccCCCC
Q 004766 275 DLSALPEGLEGFKKRDGLLPFVKLIDGFDAQ-YEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPN----DWFEVIPEAER 349 (732)
Q Consensus 275 d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~----~~~~l~~~~~~ 349 (732)
+..... .....+....... ...++++|+.++...+. ..+..++..++. .......+ .
T Consensus 215 d~~~~~------------~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D----~~v~i~~~~~~~~~~~~~~~~~~~--~ 276 (420)
T 4gga_A 215 DVRVAE------------HHVATLSGHSQEVCGLRWAPDGRHLASGGND----NLVNVWPSAPGEGGWVPLQTFTQH--Q 276 (420)
T ss_dssp ETTSSS------------CEEEEEECCSSCEEEEEECTTSSEEEEEETT----SCEEEEESSCCSSCSCCSEEECCC--S
T ss_pred eecccc------------eeeEEecccccceeeeeecCCCCeeeeeecc----ccceEEeeccccccceeeeeeccc--C
Confidence 766521 1122222222222 22478888887765553 357777776653 12223223 3
Q ss_pred CceeEEEEecC-CEEEEEEecCCeeEEEEEeCCCCceeeecccccceeeEeecccCCcEEEEEEecCCCCceEEEEECCC
Q 004766 350 DVLESATAVNL-NQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKT 428 (732)
Q Consensus 350 ~~l~~~~~~~~-~~l~~~~~~~g~~~l~~~d~~~g~~~~~l~~~~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~ 428 (732)
..+..+.+.+. ..+++.........|.+||+.+|+....+..+ ..+..+.++++++.++....+ .-..++.+|..+
T Consensus 277 ~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~-~~v~~~~~~~~~~~lv~~sg~--~d~~I~iwd~~~ 353 (420)
T 4gga_A 277 GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELISGHGF--AQNQLVIWKYPT 353 (420)
T ss_dssp SCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECS-SCEEEEEEETTTTEEEEEECT--TTCCEEEEETTT
T ss_pred CceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccc-cceeeeeecCCCCeEEEEEec--CCCEEEEEECCC
Confidence 55777888763 45555543222257999999988875555543 344566678888877654322 235788999888
Q ss_pred CC
Q 004766 429 ET 430 (732)
Q Consensus 429 ~~ 430 (732)
++
T Consensus 354 ~~ 355 (420)
T 4gga_A 354 MA 355 (420)
T ss_dssp CC
T ss_pred Cc
Confidence 75
|
| >3lcr_A Tautomycetin biosynthetic PKS; alpha-beta hydrolase, thioesterase, polyketide synthase, phosphopantetheine, transferase, hydrolase; 2.00A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=98.96 E-value=8.7e-09 Score=106.64 Aligned_cols=208 Identities=7% Similarity=-0.116 Sum_probs=116.0
Q ss_pred CCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCccHHHHHHHHHH-HHHHcCC
Q 004766 479 GSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASE-YLISAGY 557 (732)
Q Consensus 479 ~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~-~l~~~~~ 557 (732)
+..|.||++||.........|.. +...|. .||.|+.+|+||.|... ....+++++.+.+. .+.+.
T Consensus 79 ~~~~~lv~lhG~~~~~~~~~~~~-~~~~L~-~~~~v~~~d~~G~G~~~----------~~~~~~~~~~~~~~~~l~~~-- 144 (319)
T 3lcr_A 79 QLGPQLILVCPTVMTTGPQVYSR-LAEELD-AGRRVSALVPPGFHGGQ----------ALPATLTVLVRSLADVVQAE-- 144 (319)
T ss_dssp CSSCEEEEECCSSTTCSGGGGHH-HHHHHC-TTSEEEEEECTTSSTTC----------CEESSHHHHHHHHHHHHHHH--
T ss_pred CCCCeEEEECCCCcCCCHHHHHH-HHHHhC-CCceEEEeeCCCCCCCC----------CCCCCHHHHHHHHHHHHHHh--
Confidence 56789999999422111234443 445565 89999999999977421 11223444443322 22222
Q ss_pred CCCCcEEEEecChhHHHHHHHHhhC---CCeeeEEEEcCCcccccc--ccc-C--CCCCcccc---ccCCCC-CHHHHHH
Q 004766 558 TQSRKLCIEGGSNGGLLVGACINQR---PDLFGCALAHVGVMDMLR--YHK-F--TIGHAWVS---DFGCSE-EEEEFYW 625 (732)
Q Consensus 558 ~d~~~i~i~G~S~GG~l~~~~~~~~---p~~f~a~v~~~p~~d~~~--~~~-~--~~~~~~~~---~~g~p~-~~~~~~~ 625 (732)
...+++.++|+|+||.++..++.+. |+.++++|+..+...... ... + ........ .+.... .......
T Consensus 145 ~~~~~~~lvGhS~Gg~vA~~~A~~~~~~~~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 224 (319)
T 3lcr_A 145 VADGEFALAGHSSGGVVAYEVARELEARGLAPRGVVLIDSYSFDGDGGRPEELFRSALNERFVEYLRLTGGGNLSQRITA 224 (319)
T ss_dssp HTTSCEEEEEETHHHHHHHHHHHHHHHTTCCCSCEEEESCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_pred cCCCCEEEEEECHHHHHHHHHHHHHHhcCCCccEEEEECCCCCCccchhhHHHHHHHHHHHHhhhhcccCCCchhHHHHH
Confidence 1225899999999999999998876 888888887655432111 000 0 00000000 011111 0111111
Q ss_pred HHh----cCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeCCCC
Q 004766 626 LIK----YSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAG 701 (732)
Q Consensus 626 ~~~----~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g 701 (732)
+.. +.-+ ... .+..|+|+++|.+ +.+++.....+.+.+.. .+.++++++ +
T Consensus 225 ~~~~~~~~~~~-~~~----------~i~~PvLli~g~~-~~~~~~~~~~~~~~~~~-------------~~~~~~~~g-~ 278 (319)
T 3lcr_A 225 QVWCLELLRGW-RPE----------GLTAPTLYVRPAQ-PLVEQEKPEWRGDVLAA-------------MGQVVEAPG-D 278 (319)
T ss_dssp HHHHHHHTTTC-CCC----------CCSSCEEEEEESS-CSSSCCCTHHHHHHHHT-------------CSEEEEESS-C
T ss_pred HHHHHHHHhcC-CCC----------CcCCCEEEEEeCC-CCCCcccchhhhhcCCC-------------CceEEEeCC-C
Confidence 111 1111 111 3789999999987 67787777777766653 256777776 6
Q ss_pred CCCCCc-hHHHHHHHHHHHHHHHHHhC
Q 004766 702 HGVGLP-TQKMIDEAADRYGFMAKMLG 727 (732)
Q Consensus 702 H~~~~~-~~~~~~~~~~~~~fl~~~l~ 727 (732)
|..... .. ..+..+.+.+||.+...
T Consensus 279 H~~~~~~~~-~~~va~~i~~fL~~~~~ 304 (319)
T 3lcr_A 279 HFTIIEGEH-VASTAHIVGDWLREAHA 304 (319)
T ss_dssp TTGGGSTTT-HHHHHHHHHHHHHHHHC
T ss_pred cHHhhCccc-HHHHHHHHHHHHHhccc
Confidence 654332 22 24566678889987653
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=2.2e-06 Score=95.37 Aligned_cols=248 Identities=13% Similarity=0.114 Sum_probs=139.9
Q ss_pred EeEEECCCCcEEEEEEeccCCceEEEEEEECC--CCceecccccceeeeeEEEE----eCCcEEEEEEecCCCCCCCCCC
Q 004766 135 IKVSVSEDAKYLAYALSYSGSDWATIKLMRIE--DQIVEADALSWFKFSSIAWT----HDSKGFFYSRYPAPKEGKDMDA 208 (732)
Q Consensus 135 ~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~--~g~~~~~~~~~~~~~~~~Ws----pDg~~l~y~~~~~~~~~~~~~~ 208 (732)
..+.+||||++|..+ +.. ..|.++|+. +++.+.....+....++++| |||++++.+..
T Consensus 200 ~~v~~SpDGr~lyv~-~~d----g~V~viD~~~~t~~~v~~i~~G~~P~~ia~s~~~~pDGk~l~v~n~----------- 263 (567)
T 1qks_A 200 HISRLSASGRYLFVI-GRD----GKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAY----------- 263 (567)
T ss_dssp EEEEECTTSCEEEEE-ETT----SEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEE-----------
T ss_pred cceEECCCCCEEEEE-cCC----CeEEEEECCCCCCcEeEEEecCCCCceeEEccccCCCCCEEEEEEc-----------
Confidence 478999999986544 332 279999996 77654332222234688999 79999988753
Q ss_pred CCcccCCcccEEEEEECCCCCCCCeEEEec--CC------CCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCC
Q 004766 209 GTETDSNLYHEFYYHFLGTKQSEDILCWKD--PE------HPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALP 280 (732)
Q Consensus 209 ~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~--~~------~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~ 280 (732)
.+..|.+++..+.+....+-... .+ ++ ....+..|+++...++.... ...|+++|..+..
T Consensus 264 -------~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~-rva~i~~s~~~~~~vv~~~~----~g~v~~vd~~~~~ 331 (567)
T 1qks_A 264 -------WPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEP-RVAAILASHYRPEFIVNVKE----TGKILLVDYTDLN 331 (567)
T ss_dssp -------ETTEEEEEETTTCCEEEEEECCEECTTTCCEESCC-CEEEEEECSSSSEEEEEETT----TTEEEEEETTCSS
T ss_pred -------cCCeEEEEECCCCcEEEEEeccccccccccccCCC-ceEEEEEcCCCCEEEEEecC----CCeEEEEecCCCc
Confidence 23456777766543211111000 00 11 23467778988776655422 3579999987521
Q ss_pred CCcccccccCCCCCcEEeeecccceEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccC-CC-CCceeEEEE-
Q 004766 281 EGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPE-AE-RDVLESATA- 357 (732)
Q Consensus 281 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~-~~-~~~l~~~~~- 357 (732)
......+..+....-..|+|||+++++..+. ..+|..+|+++++ ....++- .. .+.-.+..+
T Consensus 332 -----------~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~---sn~V~ViD~~t~k-l~~~i~vgg~~Phpg~g~~~~ 396 (567)
T 1qks_A 332 -----------NLKTTEISAERFLHDGGLDGSHRYFITAANA---RNKLVVIDTKEGK-LVAIEDTGGQTPHPGRGANFV 396 (567)
T ss_dssp -----------EEEEEEEECCSSEEEEEECTTSCEEEEEEGG---GTEEEEEETTTTE-EEEEEECSSSSBCCTTCEEEE
T ss_pred -----------cceeeeeeccccccCceECCCCCEEEEEeCC---CCeEEEEECCCCc-EEEEEeccCcCCCCccceeeE
Confidence 0001111111111112489999988776543 3479999999876 2323332 11 011123333
Q ss_pred ecC-CEEEEEEecCCeeEEEEEeCCCC-------ceeeecccc-cceeeEeecccCCcEEEEEEecCCCC-----ceEEE
Q 004766 358 VNL-NQMIVSYLSDVKYVLQIRDLKNG-------SLLHQLPIE-IGSVNAISARREDSVVFISFTSFLIP-----GIVYQ 423 (732)
Q Consensus 358 ~~~-~~l~~~~~~~g~~~l~~~d~~~g-------~~~~~l~~~-~g~v~~~~~s~d~~~l~~~~ss~~~p-----~~~y~ 423 (732)
.++ +.++++ ..-+...|.++|.+++ +.++.|... .+.+ .+..+|+++.+|+.. ...| .++..
T Consensus 397 ~p~~g~v~~t-~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~-~i~~~p~~~~l~v~~--~~~~~~~~~~~v~v 472 (567)
T 1qks_A 397 HPTFGPVWAT-SHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSL-FIKTHPNSQYLYVDA--TLNPEAEISGSVAV 472 (567)
T ss_dssp ETTTEEEEEE-EBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCC-CEECCTTCSEEEEEC--TTCSSHHHHTCEEE
T ss_pred CCCCCcEEEe-CCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCE-EEEeCCCCCeEEEec--CCCCCcccCceEEE
Confidence 443 445444 3334457999998763 344555543 3333 456789999888653 2333 48889
Q ss_pred EECCCC
Q 004766 424 CNLKTE 429 (732)
Q Consensus 424 ~d~~~~ 429 (732)
+|..+.
T Consensus 473 ~d~~~~ 478 (567)
T 1qks_A 473 FDIKAM 478 (567)
T ss_dssp EEGGGC
T ss_pred EECCcc
Confidence 998755
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=98.94 E-value=1.1e-07 Score=99.71 Aligned_cols=243 Identities=12% Similarity=0.033 Sum_probs=141.4
Q ss_pred CEEEEeEEECCC---CcEEEEEEeccCCceEEEEEEECCCCceecccc------cceeeeeEEEEeC----CcEEEEEEe
Q 004766 131 TAALIKVSVSED---AKYLAYALSYSGSDWATIKLMRIEDQIVEADAL------SWFKFSSIAWTHD----SKGFFYSRY 197 (732)
Q Consensus 131 ~~~~~~~~~SPD---G~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~------~~~~~~~~~WspD----g~~l~y~~~ 197 (732)
...+..++|||+ |..++++....| .|++||+.+++.+.... ....+..++|+|| |+.|+....
T Consensus 18 ~~~v~~i~~~p~~~~~~~~~~~~~~~~----~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~ 93 (366)
T 3k26_A 18 NQPLFGVQFNWHSKEGDPLVFATVGSN----RVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGS 93 (366)
T ss_dssp CSCEEEEEECTTCCTTSCEEEEEEETT----EEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEET
T ss_pred CCceEEEEEecccCCCCceEEEECCCC----EEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecC
Confidence 345778999985 665555543332 69999999776432111 1123578999999 556665542
Q ss_pred cCCCCCCCCCCCCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEec-CCcEEEEEEecCCcceEEEEEEeC
Q 004766 198 PAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTE-DGQYLVMCIEENCDPVNKVYYCDL 276 (732)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~~l~~~d~ 276 (732)
...|.+|++.++.. +..+.. +...+..+.|+| ++++|+....++ .|.++|+
T Consensus 94 -------------------dg~i~v~d~~~~~~--~~~~~~--~~~~i~~~~~~~~~~~~l~s~~~dg-----~i~iwd~ 145 (366)
T 3k26_A 94 -------------------RGIIRIINPITMQC--IKHYVG--HGNAINELKFHPRDPNLLLSVSKDH-----ALRLWNI 145 (366)
T ss_dssp -------------------TCEEEEECTTTCCE--EEEEES--CCSCEEEEEECSSCTTEEEEEETTS-----CEEEEET
T ss_pred -------------------CCEEEEEEchhceE--eeeecC--CCCcEEEEEECCCCCCEEEEEeCCC-----eEEEEEe
Confidence 23688999876532 223332 334567899999 888887665433 3888898
Q ss_pred CCCCCCcccccccCCCCCcEEee--ecccceE--EEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEecc-------
Q 004766 277 SALPEGLEGFKKRDGLLPFVKLI--DGFDAQY--EVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIP------- 345 (732)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~--~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~------- 345 (732)
.++. ....+. ......+ ..|+|+++.|+..+.. ..|..+|+.++.....+..
T Consensus 146 ~~~~-------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~~~~ 208 (366)
T 3k26_A 146 QTDT-------------LVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMD----HSLKLWRINSKRMMNAIKESYDYNPN 208 (366)
T ss_dssp TTTE-------------EEEEECSTTSCSSCEEEEEECTTSSEEEEEETT----SCEEEEESCSHHHHHHHHHHHTCCGG
T ss_pred ecCe-------------EEEEecccccccCceeEEEECCCCCEEEEecCC----CCEEEEECCCCccccccceeEEecCC
Confidence 7642 112221 1111222 2488998877765442 3688888876531110000
Q ss_pred -------------------CCCCCceeEEEEecCCEEEEEEecCCeeEEEEEeCCCCce--------------eeecccc
Q 004766 346 -------------------EAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSL--------------LHQLPIE 392 (732)
Q Consensus 346 -------------------~~~~~~l~~~~~~~~~~l~~~~~~~g~~~l~~~d~~~g~~--------------~~~l~~~ 392 (732)
......+..+.+.+ + ++++...++ .|.+||+.+++. +..+..+
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~-~l~~~~~d~--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (366)
T 3k26_A 209 KTNRPFISQKIHFPDFSTRDIHRNYVDCVRWLG-D-LILSKSCEN--AIVCWKPGKMEDDIDKIKPSESNVTILGRFDYS 284 (366)
T ss_dssp GCSSCCCCEEECCCSEEECSSCSSCCCEEEEET-T-EEEEECSSS--EEEEEEESSTTCCGGGCCTTCCCEEEEEEEECS
T ss_pred CCcccccceeeccCccccccCCcceEEEEEEcC-C-EEEEEecCC--EEEEEeCCCccccccccccCCcchheecccccc
Confidence 00124567777774 4 555555553 688899876543 1222223
Q ss_pred cceeeEeecccC--CcEEEEEEecCCCCceEEEEECCCCC
Q 004766 393 IGSVNAISARRE--DSVVFISFTSFLIPGIVYQCNLKTET 430 (732)
Q Consensus 393 ~g~v~~~~~s~d--~~~l~~~~ss~~~p~~~y~~d~~~~~ 430 (732)
...+..+.++++ +..++.. + .-..++.||+.+++
T Consensus 285 ~~~v~~~~~s~~~~~~~l~~~-~---~dg~i~vwd~~~~~ 320 (366)
T 3k26_A 285 QCDIWYMRFSMDFWQKMLALG-N---QVGKLYVWDLEVED 320 (366)
T ss_dssp SCCSSCCCCEECTTSSEEEEE-C---TTSCEEEEECCSSS
T ss_pred CCcEEEEEEcCCCCCcEEEEE-e---cCCcEEEEECCCCC
Confidence 344556667777 7755533 2 23578899988764
|
| >2fj0_A JuvenIle hormone esterase; manduca sexta, alpha-beta hydrolase; HET: TFC; 2.70A {Trichoplusia NI} | Back alignment and structure |
|---|
Probab=98.94 E-value=1e-09 Score=121.84 Aligned_cols=125 Identities=14% Similarity=0.097 Sum_probs=84.7
Q ss_pred EEEEEEEc-----CCCCCCCC----ccEEEEEcCCCCc---cCCCCcChhHHHHHHhcCcEEEEEcccCCC-CCchhHHh
Q 004766 465 IPMFIVSK-----KNIKLDGS----HPCLLYGYGGFNI---SVTPSFSVSRTILMRHLGAVFCIANIRGGG-EYGEEWHK 531 (732)
Q Consensus 465 i~~~~~~p-----~~~~~~~~----~P~vv~~hG~~~~---~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g-~~g~~~~~ 531 (732)
+.+.++.| +.. ..++ .|+||++|||... .....+.. ..|+++|++|+.+|||.+. +|...
T Consensus 91 L~lnv~~P~~~~~~~~-~~~~~~~~~Pviv~iHGGg~~~g~~~~~~~~~---~~l~~~g~vvv~~nYRl~~~Gf~~~--- 163 (551)
T 2fj0_A 91 IHANIHVPYYALPRDA-ADKNRFAGLPVLVFIHGGGFAFGSGDSDLHGP---EYLVSKDVIVITFNYRLNVYGFLSL--- 163 (551)
T ss_dssp CEEEEEEEGGGCCCC---------CEEEEEEECCSTTTSCCSCTTTCBC---TTGGGGSCEEEEECCCCHHHHHCCC---
T ss_pred eEEEEEecCccccccc-cccCcCCCCCEEEEEcCCccccCCCcccccCH---HHHHhCCeEEEEeCCcCCccccccC---
Confidence 55666677 322 2234 8999999998532 22222332 2344599999999999642 11110
Q ss_pred cccccCCccHHHHHHHHHHHHHHcC---CCCCCcEEEEecChhHHHHHHHHhh--CCCeeeEEEEcCCcc
Q 004766 532 GGALAKKQNCFDDFISASEYLISAG---YTQSRKLCIEGGSNGGLLVGACINQ--RPDLFGCALAHVGVM 596 (732)
Q Consensus 532 ~~~~~~~~~~~~D~~~~~~~l~~~~---~~d~~~i~i~G~S~GG~l~~~~~~~--~p~~f~a~v~~~p~~ 596 (732)
......+...+.|++++++|+.++- -.||+||.|+|+|+||.+++.++.. .+.+|+++|+.+|..
T Consensus 164 ~~~~~~~n~gl~D~~~al~wv~~~i~~fggDp~~v~l~G~SaGg~~~~~~~~~~~~~~lf~~~i~~sg~~ 233 (551)
T 2fj0_A 164 NSTSVPGNAGLRDMVTLLKWVQRNAHFFGGRPDDVTLMGQSAGAAATHILSLSKAADGLFRRAILMSGTS 233 (551)
T ss_dssp SSSSCCSCHHHHHHHHHHHHHHHHTGGGTEEEEEEEEEEETHHHHHHHHHTTCGGGTTSCSEEEEESCCT
T ss_pred cccCCCCchhHHHHHHHHHHHHHHHHHhCCChhhEEEEEEChHHhhhhccccCchhhhhhhheeeecCCc
Confidence 0001223456899999999998762 2599999999999999999988875 467999999999864
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=98.94 E-value=4.4e-07 Score=95.82 Aligned_cols=266 Identities=9% Similarity=0.008 Sum_probs=139.0
Q ss_pred EECCCCcEEEEEEeccCCceE-EEEEEECCCCceecccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCCc
Q 004766 138 SVSEDAKYLAYALSYSGSDWA-TIKLMRIEDQIVEADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNL 216 (732)
Q Consensus 138 ~~SPDG~~la~~~~~~G~e~~-~i~v~dl~~g~~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~~ 216 (732)
..+|||++ +|+.+..+.... +|+++|.++++.+.....+.. .++++||||++||++...... ..+...
T Consensus 27 ~~~~~~~~-~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~-p~i~~spDg~~lyv~n~~~~~---------~~rg~~ 95 (373)
T 2mad_H 27 APGADGRR-SYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFL-PNPVAAHSGSEFALASTSFSR---------IAKGKR 95 (373)
T ss_pred cCCCCCCE-EEEeCCcccCCccEEEEEECCCCeEEEEecCCCC-CCeEECCCCCEEEEEeccccc---------cccCCC
Confidence 45688965 677764222212 899999999986543222222 489999999999887532100 000112
Q ss_pred ccEEEEEECCCCCCCCeEEEecCCC---CeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCccc-ccccCCC
Q 004766 217 YHEFYYHFLGTKQSEDILCWKDPEH---PKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEG-FKKRDGL 292 (732)
Q Consensus 217 ~~~v~~~~lgt~~~~~~~v~~~~~~---~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~-~~~~~~~ 292 (732)
...|.+++..+......+-...... ...-..+.+||||++|++..... .+.|.++| ++++.. .. +.. +
T Consensus 96 ~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~---~~~v~viD-~t~~~~-~~~i~~---~ 167 (373)
T 2mad_H 96 TDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAA---GPAVGLVV-QGGSSD-DQLLSS---P 167 (373)
T ss_pred CCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCC---CCeEEEEE-CCCCEE-eEEcCC---C
Confidence 3457788876543221111110000 01123688999999998764322 25688899 775311 11 100 0
Q ss_pred CCcEEeeecccceEE-------------------------------------EEEecCCeEEEEeCCCCCCceEEEEeCC
Q 004766 293 LPFVKLIDGFDAQYE-------------------------------------VIANDDTVFTFLTNKDAPKYKIIRVDLK 335 (732)
Q Consensus 293 ~~~~~l~~~~~~~~~-------------------------------------~~s~dg~~l~~~s~~~~~~~~l~~~d~~ 335 (732)
.+. .+.......+. .++++++.+++.+. ..+++.+|+.
T Consensus 168 ~~~-~~~~~~~~~~~~~~~dg~~~~vd~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~----~~~v~vid~~ 242 (373)
T 2mad_H 168 TCY-HIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVY----SGKILQADIS 242 (373)
T ss_pred ceE-EEEeCCCceEEEEcCCCCEEEEECCCcEEEEEeccccccCCcceeecceeEecCCEEEEEcC----CceEEEEecc
Confidence 000 00000000001 12333444444432 1257777776
Q ss_pred CCCC-c-eE--eccCC---C---CCceeEEEEecC-CEEEEEEecC-------CeeEEEEEeCCCCceeeecccccceee
Q 004766 336 EPND-W-FE--VIPEA---E---RDVLESATAVNL-NQMIVSYLSD-------VKYVLQIRDLKNGSLLHQLPIEIGSVN 397 (732)
Q Consensus 336 ~~~~-~-~~--l~~~~---~---~~~l~~~~~~~~-~~l~~~~~~~-------g~~~l~~~d~~~g~~~~~l~~~~g~v~ 397 (732)
+... . .. +.... . ......+.++++ +++|+..... ....|+++|+++++.+++|+.+. ...
T Consensus 243 ~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~-~p~ 321 (373)
T 2mad_H 243 AAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGH-DVD 321 (373)
T ss_pred CCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCC-CcC
Confidence 5430 0 00 00000 0 001122455554 5677655421 23589999999888878886553 345
Q ss_pred EeecccCCcEEEEEEecCCCCceEEEEECCCCC
Q 004766 398 AISARREDSVVFISFTSFLIPGIVYQCNLKTET 430 (732)
Q Consensus 398 ~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~~ 430 (732)
.+.+++|++.+++..+.. ...+..+|+++++
T Consensus 322 ~i~~s~Dg~~~l~v~~~~--~~~V~ViD~~t~~ 352 (373)
T 2mad_H 322 AISVAQDGGPDLYALSAG--TEVLHIYDAGAGD 352 (373)
T ss_pred eEEECCCCCeEEEEEcCC--CCeEEEEECCCCC
Confidence 778899999555554322 3689999998885
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=7e-08 Score=119.26 Aligned_cols=253 Identities=10% Similarity=0.078 Sum_probs=153.7
Q ss_pred CEEEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceeccc-ccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCC
Q 004766 131 TAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADA-LSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAG 209 (732)
Q Consensus 131 ~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~-~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~ 209 (732)
...+..++|||||++||.... ..+|+|||+.+|+.+... ........++|+|+++..++.+.
T Consensus 657 ~~~v~~~~~s~~~~~l~s~~~-----d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg------------ 719 (1249)
T 3sfz_A 657 EDEVLCCAFSSDDSYIATCSA-----DKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATG------------ 719 (1249)
T ss_dssp SSCEEEEEECTTSSEEEEEET-----TSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEE------------
T ss_pred CCCEEEEEEecCCCEEEEEeC-----CCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEE------------
Confidence 345778999999999986642 247999999999855321 12223478999997654333321
Q ss_pred CcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCccccccc
Q 004766 210 TETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKR 289 (732)
Q Consensus 210 ~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~ 289 (732)
.....|.+|++.++.. +.....+...+..+.|+|||++|+..+.+ ..|.++|+.++... ..+...
T Consensus 720 -----~~d~~v~vwd~~~~~~----~~~~~~h~~~v~~~~~sp~~~~l~s~s~d-----g~v~vwd~~~~~~~-~~~~~~ 784 (1249)
T 3sfz_A 720 -----SNDFFLKLWDLNQKEC----RNTMFGHTNSVNHCRFSPDDELLASCSAD-----GTLRLWDVRSANER-KSINVK 784 (1249)
T ss_dssp -----ETTSCEEEEETTSSSE----EEEECCCSSCEEEEEECSSTTEEEEEESS-----SEEEEEEGGGTEEE-EEEECC
T ss_pred -----eCCCeEEEEECCCcch----hheecCCCCCEEEEEEecCCCEEEEEECC-----CeEEEEeCCCCccc-ceeccc
Confidence 1223588999877542 22222234456789999999998876543 34778887763210 000000
Q ss_pred CCCCCcEEeeecc--cceEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecCCEEEEEE
Q 004766 290 DGLLPFVKLIDGF--DAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSY 367 (732)
Q Consensus 290 ~~~~~~~~l~~~~--~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~~l~~~~ 367 (732)
............. ......|+|+|+.+++.++ ..+..+|+.++.....+... ....+..+.+++++.+++..
T Consensus 785 ~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~-----~~v~~~d~~~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~ 858 (1249)
T 3sfz_A 785 RFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAK-----NKVLLFDIHTSGLLAEIHTG-HHSTIQYCDFSPYDHLAVIA 858 (1249)
T ss_dssp CCC--------CCCCCBCCCCBCTTSSEEEEEET-----TEEEEEETTTCCEEEEEECS-SSSCCCEEEECSSTTEEEEE
T ss_pred ccccccCCccccccceEEEEEECCCCCEEEEEcC-----CcEEEEEecCCCceeEEcCC-CCCceEEEEEcCCCCEEEEE
Confidence 0000000000000 0111248899998887552 46889999887633333322 23567888888877777777
Q ss_pred ecCCeeEEEEEeCCCCceeeecccccceeeEeecccCCcEEEEEEecCCCCceEEEEECC
Q 004766 368 LSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLK 427 (732)
Q Consensus 368 ~~~g~~~l~~~d~~~g~~~~~l~~~~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~ 427 (732)
..++ .|.+|++.+++....+..+.+.+..+.++++++.++. .+. -..+..|++.
T Consensus 859 ~~dg--~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s-~s~---dg~v~vw~~~ 912 (1249)
T 3sfz_A 859 LSQY--CVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLT-ASD---DQTIRVWETK 912 (1249)
T ss_dssp CSSS--CEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEE-EET---TSCEEEEEHH
T ss_pred eCCC--eEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEE-EeC---CCeEEEEEcc
Confidence 7664 6889999888766666656677888899999986553 332 2456677654
|
| >1p0i_A Cholinesterase; serine hydrolase, butyrate, hydrolase; HET: NAG FUC MES; 2.00A {Homo sapiens} SCOP: c.69.1.1 PDB: 1p0m_A* 1p0p_A* 1p0q_A* 1xlu_A* 1xlv_A* 1xlw_A* 2wsl_A* 2pm8_A* 3djy_A* 3dkk_A* 2wij_A* 2wif_A* 2wik_A* 2y1k_A* 2j4c_A* 2xmb_A* 2xmc_A* 2xmd_A* 2xmg_A* 2wig_A* ... | Back alignment and structure |
|---|
Probab=98.93 E-value=2e-09 Score=119.01 Aligned_cols=127 Identities=17% Similarity=0.126 Sum_probs=87.7
Q ss_pred EEEEEEEcCCCCCCCCccEEEEEcCCCCc---cCCCCcChhHHHHHHhcCcEEEEEcccCCC-CCchhHHhcccccCCcc
Q 004766 465 IPMFIVSKKNIKLDGSHPCLLYGYGGFNI---SVTPSFSVSRTILMRHLGAVFCIANIRGGG-EYGEEWHKGGALAKKQN 540 (732)
Q Consensus 465 i~~~~~~p~~~~~~~~~P~vv~~hG~~~~---~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g-~~g~~~~~~~~~~~~~~ 540 (732)
+.+.++.|+.. .++.|+||++|||... .....|.. ..++.+.|++|+.+|||.+. +|.... .........
T Consensus 93 l~lnv~~P~~~--~~~~Pv~v~iHGGg~~~g~~~~~~~~~--~~la~~~~~vvv~~nYRlg~~Gf~~~~--~~~~~~~n~ 166 (529)
T 1p0i_A 93 LYLNVWIPAPK--PKNATVLIWIYGGGFQTGTSSLHVYDG--KFLARVERVIVVSMNYRVGALGFLALP--GNPEAPGNM 166 (529)
T ss_dssp CEEEEEEESSC--CSSEEEEEEECCSTTTSCCTTCGGGCT--HHHHHHHCCEEEEECCCCHHHHHCCCT--TCTTSCSCH
T ss_pred CeEEEeeCCCC--CCCCeEEEEECCCccccCCCCccccCh--HHHhccCCeEEEEecccccccccccCC--CCCCCcCcc
Confidence 45566778653 2578999999998532 22223443 23444479999999999541 111100 000122334
Q ss_pred HHHHHHHHHHHHHHc---CCCCCCcEEEEecChhHHHHHHHHhhC--CCeeeEEEEcCCccc
Q 004766 541 CFDDFISASEYLISA---GYTQSRKLCIEGGSNGGLLVGACINQR--PDLFGCALAHVGVMD 597 (732)
Q Consensus 541 ~~~D~~~~~~~l~~~---~~~d~~~i~i~G~S~GG~l~~~~~~~~--p~~f~a~v~~~p~~d 597 (732)
.+.|+++|++|+.++ --.||+||.|+|+|+||.+++.++... +.+|+++|+.+|...
T Consensus 167 gl~D~~~al~wv~~~i~~fggdp~~vti~G~SaGg~~~~~~~~~~~~~~lf~~~i~~Sg~~~ 228 (529)
T 1p0i_A 167 GLFDQQLALQWVQKNIAAFGGNPKSVTLFGESAGAASVSLHLLSPGSHSLFTRAILQSGSFN 228 (529)
T ss_dssp HHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGGGGCSEEEEESCCTT
T ss_pred cHHHHHHHHHHHHHHHHHhCCChhheEEeeccccHHHHHHHHhCccchHHHHHHHHhcCccc
Confidence 589999999999876 236999999999999999999888753 468999999999764
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=98.93 E-value=3.9e-07 Score=95.94 Aligned_cols=267 Identities=11% Similarity=0.036 Sum_probs=139.4
Q ss_pred CCCCcEEEEEEeccCC--ceEEEEEEECCCCceecccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCCcc
Q 004766 140 SEDAKYLAYALSYSGS--DWATIKLMRIEDQIVEADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLY 217 (732)
Q Consensus 140 SPDG~~la~~~~~~G~--e~~~i~v~dl~~g~~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~~~ 217 (732)
.||+++ +|+.+.+.+ ....|+++|.++++.+.....+... ++++||||++||.+...... .......
T Consensus 12 ~~~~~~-~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p-~i~~spdg~~lyv~~~~~~~---------~~~g~~~ 80 (361)
T 2oiz_A 12 APQENR-IYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG-HVQVSNDGKKIYTMTTYHER---------ITRGKRS 80 (361)
T ss_dssp SCGGGE-EEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE-EEEECTTSSEEEEEEEEETT---------SSSSCEE
T ss_pred CCCCCE-EEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC-ceEECCCCCEEEEEEecccc---------cccCCCC
Confidence 358876 566553311 1248999999999865432223333 89999999998877531100 0001123
Q ss_pred cEEEEEECCCCCCCCeEEEecCC--CCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCccc-ccccCCCCC
Q 004766 218 HEFYYHFLGTKQSEDILCWKDPE--HPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEG-FKKRDGLLP 294 (732)
Q Consensus 218 ~~v~~~~lgt~~~~~~~v~~~~~--~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~-~~~~~~~~~ 294 (732)
..|..+++.+......+-..... .......+++||||++|+...... .+.|.++|++++.. +.. +.. ..+
T Consensus 81 ~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~---~~~v~v~d~~~~~~-~~~~i~~---~~~ 153 (361)
T 2oiz_A 81 DVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASP---ATSIGIVDVAKGDY-VEDVTAA---AGC 153 (361)
T ss_dssp EEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESS---SEEEEEEETTTTEE-EEEEGGG---TTE
T ss_pred CEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCC---CCeEEEEECCCCcE-EEEEecC---CCc
Confidence 46888888765432221111000 001123578999999997664321 25688889876421 111 100 000
Q ss_pred cEEeeeccc-ceEEEEEecCC--------------------------------------eEEEEeCCCCCCceEEEEeCC
Q 004766 295 FVKLIDGFD-AQYEVIANDDT--------------------------------------VFTFLTNKDAPKYKIIRVDLK 335 (732)
Q Consensus 295 ~~~l~~~~~-~~~~~~s~dg~--------------------------------------~l~~~s~~~~~~~~l~~~d~~ 335 (732)
+........ ..+...++||+ .+++.+. ..+++.+|+.
T Consensus 154 ~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~----~~~v~v~d~~ 229 (361)
T 2oiz_A 154 WSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSY----YGNVYSADFS 229 (361)
T ss_dssp EEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBT----TSEEEEEECS
T ss_pred ceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeC----CCeEEEEEec
Confidence 000000000 01112233333 3333321 1246777765
Q ss_pred CCCCceEe-----ccC---CCCCce---eEEEEecC-CEEEEEEecC--------CeeEEEEEeCCCCceeeecccccce
Q 004766 336 EPNDWFEV-----IPE---AERDVL---ESATAVNL-NQMIVSYLSD--------VKYVLQIRDLKNGSLLHQLPIEIGS 395 (732)
Q Consensus 336 ~~~~~~~l-----~~~---~~~~~l---~~~~~~~~-~~l~~~~~~~--------g~~~l~~~d~~~g~~~~~l~~~~g~ 395 (732)
+.. ...+ ... ...... ..+.++++ +++|+....+ ....|++||+++++.+..+..+.
T Consensus 230 ~~~-~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~-- 306 (361)
T 2oiz_A 230 GDE-VKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD-- 306 (361)
T ss_dssp SSS-CEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--
T ss_pred CCC-ceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--
Confidence 443 1110 000 000000 12566665 6777765522 23489999999998877777655
Q ss_pred eeEeecccCCcEEEEEEecCCCCceEEEEECCCCCCceEEEEe
Q 004766 396 VNAISARREDSVVFISFTSFLIPGIVYQCNLKTETPEMKIFRE 438 (732)
Q Consensus 396 v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~~~~~~~l~~ 438 (732)
...+.+++|++.++.+ + . ..+..+|+++++ ++.+..
T Consensus 307 p~~ia~spdg~~l~v~-n-~---~~v~v~D~~t~~--l~~~~~ 342 (361)
T 2oiz_A 307 ALSMTIDQQRNLMLTL-D-G---GNVNVYDISQPE--PKLLRT 342 (361)
T ss_dssp CCEEEEETTTTEEEEE-C-S---SCEEEEECSSSS--CEEEEE
T ss_pred eeEEEECCCCCEEEEe-C-C---CeEEEEECCCCc--ceeeEE
Confidence 6788899999966533 2 2 889999999883 344443
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.93 E-value=3.2e-07 Score=97.75 Aligned_cols=201 Identities=12% Similarity=0.123 Sum_probs=118.3
Q ss_pred EEEEeEEECC-CCcEEEEEEeccCCceEEEEEEECCCCceecccc--------------cceeeeeEEEEe-CCcEEEEE
Q 004766 132 AALIKVSVSE-DAKYLAYALSYSGSDWATIKLMRIEDQIVEADAL--------------SWFKFSSIAWTH-DSKGFFYS 195 (732)
Q Consensus 132 ~~~~~~~~SP-DG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~--------------~~~~~~~~~Wsp-Dg~~l~y~ 195 (732)
..+..++||| ||++||.... + ..|++||+.+++...... .......++|+| +++.|+..
T Consensus 44 ~~v~~~~~s~~~~~~l~~~~~-d----g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~ 118 (408)
T 4a11_B 44 GGINTLDIEPVEGRYMLSGGS-D----GVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSS 118 (408)
T ss_dssp SCEEEEEECTTTCCEEEEEET-T----SCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEE
T ss_pred CcEEEEEEecCCCCEEEEEcC-C----CeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEE
Confidence 3467899999 9999887642 2 379999999876432111 222357899999 55566655
Q ss_pred EecCCCCCCCCCCCCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecC---CcEEEEEEecCCcceEEEE
Q 004766 196 RYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTED---GQYLVMCIEENCDPVNKVY 272 (732)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpD---g~~l~~~~~~~~~~~~~l~ 272 (732)
.. ...|.+|++.++.. ...+... .....+.++|. +.+++....++ .+.
T Consensus 119 ~~-------------------d~~i~iwd~~~~~~--~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~-----~v~ 169 (408)
T 4a11_B 119 SF-------------------DKTLKVWDTNTLQT--ADVFNFE---ETVYSHHMSPVSTKHCLVAVGTRGP-----KVQ 169 (408)
T ss_dssp ET-------------------TSEEEEEETTTTEE--EEEEECS---SCEEEEEECSSCSSCCEEEEEESSS-----SEE
T ss_pred eC-------------------CCeEEEeeCCCCcc--ceeccCC---CceeeeEeecCCCCCcEEEEEcCCC-----eEE
Confidence 32 23688999886532 2233322 23456777774 44776655433 388
Q ss_pred EEeCCCCCCCcccccccCCCCCcEEeeecccce-EEEEEecCCeEEEEeCCCCCCceEEEEeCCCCC-CceEecc-----
Q 004766 273 YCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQ-YEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPN-DWFEVIP----- 345 (732)
Q Consensus 273 ~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~-~~~~l~~----- 345 (732)
++|+.++. ....+....... ...|+|+++.+++....+ ..|..+|+.++. ....+-.
T Consensus 170 ~~d~~~~~-------------~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~ 233 (408)
T 4a11_B 170 LCDLKSGS-------------CSHILQGHRQEILAVSWSPRYDYILATASAD---SRVKLWDVRRASGCLITLDQHNGKK 233 (408)
T ss_dssp EEESSSSC-------------CCEEECCCCSCEEEEEECSSCTTEEEEEETT---SCEEEEETTCSSCCSEECCTTTTCS
T ss_pred EEeCCCcc-------------eeeeecCCCCcEEEEEECCCCCcEEEEEcCC---CcEEEEECCCCCccccccccccccc
Confidence 88987642 122332222211 225889988755554433 357888886553 1222200
Q ss_pred --------CCCCCceeEEEEecCCEEEEEEecCCeeEEEEEeCCCCc
Q 004766 346 --------EAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGS 384 (732)
Q Consensus 346 --------~~~~~~l~~~~~~~~~~l~~~~~~~g~~~l~~~d~~~g~ 384 (732)
......+..+.+++++..+++...++ .|.+||+.+++
T Consensus 234 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~vwd~~~~~ 278 (408)
T 4a11_B 234 SQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDN--RMRLWNSSNGE 278 (408)
T ss_dssp CCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTS--CEEEEETTTCC
T ss_pred ceeeccccccccCceeEEEEcCCCCEEEEecCCC--eEEEEECCCCc
Confidence 11134577888888666666666664 57777776554
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.92 E-value=3.2e-08 Score=109.55 Aligned_cols=248 Identities=10% Similarity=0.027 Sum_probs=142.6
Q ss_pred EEeEEECCCC---------cEEEEEEec--------------cCCceEEEEEEECCCCceec-----ccccceeeeeEEE
Q 004766 134 LIKVSVSEDA---------KYLAYALSY--------------SGSDWATIKLMRIEDQIVEA-----DALSWFKFSSIAW 185 (732)
Q Consensus 134 ~~~~~~SPDG---------~~la~~~~~--------------~G~e~~~i~v~dl~~g~~~~-----~~~~~~~~~~~~W 185 (732)
+..+.|+|++ ++||.+... .++...+|+|||+++++... .......+..++|
T Consensus 136 V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~w 215 (524)
T 2j04_B 136 VTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKW 215 (524)
T ss_dssp -CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEE
T ss_pred eeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEE
Confidence 4466788876 777776533 13445689999998876311 1111112467999
Q ss_pred EeC------CcEEEEEEecCCCCCCCCCCCCcccCCcccEEEEEECCCCCCC---------CeEEEecCCCCeeEEEeEE
Q 004766 186 THD------SKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSE---------DILCWKDPEHPKYIFSGHV 250 (732)
Q Consensus 186 spD------g~~l~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~---------~~~v~~~~~~~~~~~~~~~ 250 (732)
+|+ ++.|+....+ ..|.+|++.++... ....+.. +...+.+++|
T Consensus 216 sp~~~~~~~~~~LAs~s~D-------------------gtvrlWd~~~~~~~~~~~~~~~~p~~~l~~--h~~~v~sv~~ 274 (524)
T 2j04_B 216 HEGCHAPHLVGCLSFVSQE-------------------GTINFLEIIDNATDVHVFKMCEKPSLTLSL--ADSLITTFDF 274 (524)
T ss_dssp CSSCCCSSSSCEEEEEETT-------------------SCEEEEECCCCSSSSSEEECCCSCSEEECC--TTTCEEEEEE
T ss_pred CCCCCCCCCCceEEEEecC-------------------CeEEEEEcCCCccccccceeecCceEEEEc--CCCCEEEEEe
Confidence 997 4566655433 25888888655321 0112222 2235678999
Q ss_pred ecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCCCCcEEeeecccceEE---EEEecCCeEEEEeCCCCCCc
Q 004766 251 TEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYE---VIANDDTVFTFLTNKDAPKY 327 (732)
Q Consensus 251 SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~s~dg~~l~~~s~~~~~~~ 327 (732)
++++ .|+..+.+ ..|.++|+.++. .+...+......... .++++|..+++.+.. ..
T Consensus 275 s~~~-~lasgs~D-----gtV~lWD~~~~~------------~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~---D~ 333 (524)
T 2j04_B 275 LSPT-TVVCGFKN-----GFVAEFDLTDPE------------VPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAV---DG 333 (524)
T ss_dssp SSSS-EEEEEETT-----SEEEEEETTBCS------------SCSEEEECSSSCEEEEEEECCTTSCCEEEEEET---TS
T ss_pred cCCC-eEEEEeCC-----CEEEEEECCCCC------------CceEEeecccccEEEEEEEcCCCCCeEEEEecc---CC
Confidence 9875 55444332 348888987632 112222222222222 246666344444433 34
Q ss_pred eEEEEeCCCCCCceEeccCCCCCceeEEEEecCCEEEEEEecCCeeEEEEEeCCCCceeeecccccceeeEeecccCCcE
Q 004766 328 KIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSV 407 (732)
Q Consensus 328 ~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~~l~~~~~~~g~~~l~~~d~~~g~~~~~l~~~~g~v~~~~~s~d~~~ 407 (732)
.|.++|+.++.....+..+.....+..+.+++++..+++...+ ..|.+||+.++..+..+..+.+.|..++++|+++.
T Consensus 334 tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d--~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~ 411 (524)
T 2j04_B 334 YFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGA--SSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPM 411 (524)
T ss_dssp EEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSS--SEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCB
T ss_pred eEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCC--CcEEEEECcccccceeeecCCCceEEEEeCCCCCe
Confidence 6888898765433344443322235678888865566666655 36899999877765556556778889999999986
Q ss_pred EEEEEecCCCCceEEEEECCCC
Q 004766 408 VFISFTSFLIPGIVYQCNLKTE 429 (732)
Q Consensus 408 l~~~~ss~~~p~~~y~~d~~~~ 429 (732)
++ +.+. -.++..+|+..+
T Consensus 412 l~-Sgs~---Dgtv~lwd~~~~ 429 (524)
T 2j04_B 412 VL-AGSA---DGSLIITNAARR 429 (524)
T ss_dssp CE-EEET---TTEEECCBSCSS
T ss_pred EE-EEEC---CCEEEEEechHh
Confidence 54 3332 246777776543
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=6.2e-08 Score=119.72 Aligned_cols=245 Identities=13% Similarity=0.092 Sum_probs=151.3
Q ss_pred CEEEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceeccc-ccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCC
Q 004766 131 TAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADA-LSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAG 209 (732)
Q Consensus 131 ~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~-~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~ 209 (732)
...+..++|||||++||.... + .+|++||+.+++.+... ........++|+|||+.|+....+
T Consensus 615 ~~~v~~~~~s~~~~~l~s~~~-d----~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d----------- 678 (1249)
T 3sfz_A 615 TDAVYHACFSQDGQRIASCGA-D----KTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSAD----------- 678 (1249)
T ss_dssp SSCEEEEEECTTSSEEEEEET-T----SCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETT-----------
T ss_pred cccEEEEEECCCCCEEEEEeC-C----CeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCC-----------
Confidence 345778999999999986632 2 37999999999854321 122235789999999988876532
Q ss_pred CcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCccccccc
Q 004766 210 TETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKR 289 (732)
Q Consensus 210 ~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~ 289 (732)
..|.+|++.++.. +..+.. +...+..+.|+|++...++.+.... ..+.++|+.++.
T Consensus 679 --------~~v~vwd~~~~~~--~~~~~~--~~~~v~~~~~~~~~~~~~l~sg~~d---~~v~vwd~~~~~--------- 734 (1249)
T 3sfz_A 679 --------KKVKIWDSATGKL--VHTYDE--HSEQVNCCHFTNKSNHLLLATGSND---FFLKLWDLNQKE--------- 734 (1249)
T ss_dssp --------SEEEEEETTTCCE--EEEEEC--CSSCEEEEEECSSSSCCEEEEEETT---SCEEEEETTSSS---------
T ss_pred --------CeEEEEECCCCce--EEEEcC--CCCcEEEEEEecCCCceEEEEEeCC---CeEEEEECCCcc---------
Confidence 3699999987642 223332 3345678899997554333332222 348888987742
Q ss_pred CCCCCcEEeeecccce-EEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEecc-----------CCCCCceeEEEE
Q 004766 290 DGLLPFVKLIDGFDAQ-YEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIP-----------EAERDVLESATA 357 (732)
Q Consensus 290 ~~~~~~~~l~~~~~~~-~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~-----------~~~~~~l~~~~~ 357 (732)
....+....... ...|+|+|+.++..+.. ..|..+|+.++.....+.. ......+..+.+
T Consensus 735 ----~~~~~~~h~~~v~~~~~sp~~~~l~s~s~d----g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 806 (1249)
T 3sfz_A 735 ----CRNTMFGHTNSVNHCRFSPDDELLASCSAD----GTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSW 806 (1249)
T ss_dssp ----EEEEECCCSSCEEEEEECSSTTEEEEEESS----SEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCB
T ss_pred ----hhheecCCCCCEEEEEEecCCCEEEEEECC----CeEEEEeCCCCcccceecccccccccCCccccccceEEEEEE
Confidence 122222222222 22589999877765543 3688888876542222111 011124556677
Q ss_pred ecCCEEEEEEecCCeeEEEEEeCCCCceeeeccc-ccceeeEeecccCCcEEEEEEecCCCCceEEEEECCCCC
Q 004766 358 VNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPI-EIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 430 (732)
Q Consensus 358 ~~~~~l~~~~~~~g~~~l~~~d~~~g~~~~~l~~-~~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~~ 430 (732)
++++..++.... ..+.+|++.++.....+.. ..+.+..+.+++++..++.... -..+..||+.+++
T Consensus 807 s~dg~~l~~~~~---~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~----dg~v~vwd~~~~~ 873 (1249)
T 3sfz_A 807 SADGDKIIVAAK---NKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALS----QYCVELWNIDSRL 873 (1249)
T ss_dssp CTTSSEEEEEET---TEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECS----SSCEEEEETTTTE
T ss_pred CCCCCEEEEEcC---CcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeC----CCeEEEEEcCCCc
Confidence 776555555543 3688999987776555543 3566777888999986664433 3468888887763
|
| >1tca_A Lipase; hydrolase(carboxylic esterase); HET: NAG; 1.55A {Candida antarctica} SCOP: c.69.1.17 PDB: 1lbs_A* 1lbt_A* 1tcb_A* 1tcc_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=9.7e-09 Score=105.79 Aligned_cols=120 Identities=16% Similarity=0.054 Sum_probs=85.5
Q ss_pred eeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCccHH
Q 004766 463 TKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCF 542 (732)
Q Consensus 463 ~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~ 542 (732)
.++...++.|+.+. .+..+.||++||..+.... .|...+...|.++||.|+.+|+||.|... .....
T Consensus 14 ~~l~~~i~~p~~~~-~~~~~~VvllHG~~~~~~~-~~~~~l~~~L~~~G~~v~~~d~~g~g~~~-----------~~~~~ 80 (317)
T 1tca_A 14 SVLDAGLTCQGASP-SSVSKPILLVPGTGTTGPQ-SFDSNWIPLSTQLGYTPCWISPPPFMLND-----------TQVNT 80 (317)
T ss_dssp HHHHHTEEETTBCT-TSCSSEEEEECCTTCCHHH-HHTTTHHHHHHTTTCEEEEECCTTTTCSC-----------HHHHH
T ss_pred HHHhheeeCCCCCC-CCCCCeEEEECCCCCCcch-hhHHHHHHHHHhCCCEEEEECCCCCCCCc-----------HHHHH
Confidence 45556677777653 3455779999998776422 14323456677689999999999865311 11235
Q ss_pred HHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCC---CeeeEEEEcCCccc
Q 004766 543 DDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRP---DLFGCALAHVGVMD 597 (732)
Q Consensus 543 ~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p---~~f~a~v~~~p~~d 597 (732)
+++.+.++++.+.. ..+++.++|||+||+++..++.++| +.++++|+..|..+
T Consensus 81 ~~l~~~i~~~~~~~--g~~~v~lVGhS~GG~va~~~~~~~~~~~~~v~~lV~l~~~~~ 136 (317)
T 1tca_A 81 EYMVNAITALYAGS--GNNKLPVLTWSQGGLVAQWGLTFFPSIRSKVDRLMAFAPDYK 136 (317)
T ss_dssp HHHHHHHHHHHHHT--TSCCEEEEEETHHHHHHHHHHHHCGGGTTTEEEEEEESCCTT
T ss_pred HHHHHHHHHHHHHh--CCCCEEEEEEChhhHHHHHHHHHcCccchhhhEEEEECCCCC
Confidence 77888888887652 2368999999999999998887765 78999998887643
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=98.92 E-value=3.1e-07 Score=95.41 Aligned_cols=223 Identities=9% Similarity=0.034 Sum_probs=137.8
Q ss_pred EEEeEEECCCCc-EEEEEEeccCCceEEEEEEEC-CCCceecccc--cceeeeeEEEEeCCcEEEEEEecCCCCCCCCCC
Q 004766 133 ALIKVSVSEDAK-YLAYALSYSGSDWATIKLMRI-EDQIVEADAL--SWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDA 208 (732)
Q Consensus 133 ~~~~~~~SPDG~-~la~~~~~~G~e~~~i~v~dl-~~g~~~~~~~--~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~ 208 (732)
.+..+.|||||+ +|+.... + ..|++||+ .+++...... .......++|+| ++.|+....+
T Consensus 58 ~v~~~~~~~~~~~~l~~~~~-d----g~i~~wd~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d---------- 121 (342)
T 1yfq_A 58 PLLCCNFIDNTDLQIYVGTV-Q----GEILKVDLIGSPSFQALTNNEANLGICRICKYG-DDKLIAASWD---------- 121 (342)
T ss_dssp CEEEEEEEESSSEEEEEEET-T----SCEEEECSSSSSSEEECBSCCCCSCEEEEEEET-TTEEEEEETT----------
T ss_pred ceEEEEECCCCCcEEEEEcC-C----CeEEEEEeccCCceEeccccCCCCceEEEEeCC-CCEEEEEcCC----------
Confidence 467899999999 7876642 2 37999999 8887543322 223357899999 8888776533
Q ss_pred CCcccCCcccEEEEEECCC---------CCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCC-
Q 004766 209 GTETDSNLYHEFYYHFLGT---------KQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSA- 278 (732)
Q Consensus 209 ~~~~~~~~~~~v~~~~lgt---------~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~- 278 (732)
..|++|++.+ ..... .+ . .......+.|+|++ ++.... ...|.++|+.+
T Consensus 122 ---------~~i~iwd~~~~~~~~~~~~~~~~~--~~--~-~~~~v~~~~~~~~~--l~~~~~-----d~~i~i~d~~~~ 180 (342)
T 1yfq_A 122 ---------GLIEVIDPRNYGDGVIAVKNLNSN--NT--K-VKNKIFTMDTNSSR--LIVGMN-----NSQVQWFRLPLC 180 (342)
T ss_dssp ---------SEEEEECHHHHTTBCEEEEESCSS--SS--S-SCCCEEEEEECSSE--EEEEES-----TTEEEEEESSCC
T ss_pred ---------CeEEEEcccccccccccccCCeee--EE--e-eCCceEEEEecCCc--EEEEeC-----CCeEEEEECCcc
Confidence 3688888764 22111 11 1 23345688999998 444332 23588889876
Q ss_pred CCCCcccccccCCCCCcEEeeecccc--eEEEEEe-cCCeEEEEeCCCCCCceEEEEeCCCC------CCceEeccCCC-
Q 004766 279 LPEGLEGFKKRDGLLPFVKLIDGFDA--QYEVIAN-DDTVFTFLTNKDAPKYKIIRVDLKEP------NDWFEVIPEAE- 348 (732)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~s~-dg~~l~~~s~~~~~~~~l~~~d~~~~------~~~~~l~~~~~- 348 (732)
+.. ........... ....|+| +++.++..+.. ..+..++++.. .....+..+..
T Consensus 181 ~~~------------~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d----g~i~i~~~~~~~~~~~~~~~~~~~~~~~~ 244 (342)
T 1yfq_A 181 EDD------------NGTIEESGLKYQIRDVALLPKEQEGYACSSID----GRVAVEFFDDQGDDYNSSKRFAFRCHRLN 244 (342)
T ss_dssp TTC------------CCEEEECSCSSCEEEEEECSGGGCEEEEEETT----SEEEEEECCTTCCSTTCTTCEEEECCCCC
T ss_pred ccc------------cceeeecCCCCceeEEEECCCCCCEEEEEecC----CcEEEEEEcCCCcccccccceeeeccccc
Confidence 321 11112221111 1225888 88877765542 34666665544 32334433321
Q ss_pred ------CCceeEEEEecCCEEEEEEecCCeeEEEEEeCCCCceeeecccc-cceeeEeecccCCcEEEEEE
Q 004766 349 ------RDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIE-IGSVNAISARREDSVVFISF 412 (732)
Q Consensus 349 ------~~~l~~~~~~~~~~l~~~~~~~g~~~l~~~d~~~g~~~~~l~~~-~g~v~~~~~s~d~~~l~~~~ 412 (732)
...+..+.+++++.++++...++ .|++||+.+++.+..+... .+.+..+. +++..++...
T Consensus 245 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg--~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s 311 (342)
T 1yfq_A 245 LKDTNLAYPVNSIEFSPRHKFLYTAGSDG--IISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLAT 311 (342)
T ss_dssp TTCCSSCCCEEEEEECTTTCCEEEEETTS--CEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEE
T ss_pred ccccccceeEEEEEEcCCCCEEEEecCCc--eEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEe
Confidence 12688899988767777777774 6899999888876777665 66777776 7887655443
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.91 E-value=2.6e-06 Score=86.91 Aligned_cols=234 Identities=12% Similarity=0.059 Sum_probs=142.4
Q ss_pred EEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceeccc-ccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCc
Q 004766 133 ALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADA-LSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTE 211 (732)
Q Consensus 133 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~-~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~ 211 (732)
.+..+.| |||++|+.... ...|++||+.+++..... ........++|+||++.|+....+.
T Consensus 20 ~v~~~~~-~~~~~l~s~~~-----dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg------------ 81 (313)
T 3odt_A 20 DVRDVVA-VDDSKVASVSR-----DGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDT------------ 81 (313)
T ss_dssp CEEEEEE-EETTEEEEEET-----TSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTS------------
T ss_pred CcEEEEe-cCCCEEEEEEc-----CCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCC------------
Confidence 4667888 99999875532 248999999888744321 1122357899999999988875432
Q ss_pred ccCCcccEEEEEECCCCCCCC-eEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccC
Q 004766 212 TDSNLYHEFYYHFLGTKQSED-ILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRD 290 (732)
Q Consensus 212 ~~~~~~~~v~~~~lgt~~~~~-~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~ 290 (732)
.+..|++....... ...+. .+...+..+.| ++++++....+ ..+.++|...
T Consensus 82 -------~i~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~--~~~~l~~~~~d-----~~i~~~d~~~------------ 133 (313)
T 3odt_A 82 -------MINGVPLFATSGEDPLYTLI--GHQGNVCSLSF--QDGVVISGSWD-----KTAKVWKEGS------------ 133 (313)
T ss_dssp -------CEEEEETTCCTTSCC-CEEC--CCSSCEEEEEE--ETTEEEEEETT-----SEEEEEETTE------------
T ss_pred -------eEEEEEeeecCCCCcccchh--hcccCEEEEEe--cCCEEEEEeCC-----CCEEEEcCCc------------
Confidence 47777776543221 11222 22334455666 67777655432 3477777221
Q ss_pred CCCCcEEeeecccceE-EEEEe-cCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecCCEEEEEEe
Q 004766 291 GLLPFVKLIDGFDAQY-EVIAN-DDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYL 368 (732)
Q Consensus 291 ~~~~~~~l~~~~~~~~-~~~s~-dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~~l~~~~~ 368 (732)
....+........ ..+.+ +++.++..+.. ..|..+|.... ...+.. .....+..+.+++++. ++...
T Consensus 134 ---~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d----~~i~i~d~~~~--~~~~~~-~~~~~i~~~~~~~~~~-~~~~~ 202 (313)
T 3odt_A 134 ---LVYNLQAHNASVWDAKVVSFSENKFLTASAD----KTIKLWQNDKV--IKTFSG-IHNDVVRHLAVVDDGH-FISCS 202 (313)
T ss_dssp ---EEEEEECCSSCEEEEEEEETTTTEEEEEETT----SCEEEEETTEE--EEEECS-SCSSCEEEEEEEETTE-EEEEE
T ss_pred ---EEEecccCCCceeEEEEccCCCCEEEEEECC----CCEEEEecCce--EEEEec-cCcccEEEEEEcCCCe-EEEcc
Confidence 1222222222222 23566 77777655442 35777773322 233332 1246688899988666 56666
Q ss_pred cCCeeEEEEEeCCCCceeeecccccceeeEeecccCCcEEEEEEecCCCCceEEEEECCCCC
Q 004766 369 SDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 430 (732)
Q Consensus 369 ~~g~~~l~~~d~~~g~~~~~l~~~~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~~ 430 (732)
.++ .|++||+.+++.+..+..+.+.+..+.+++++ .++ +.+ .-..++.||+.+++
T Consensus 203 ~dg--~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~-~~~---~dg~v~iwd~~~~~ 257 (313)
T 3odt_A 203 NDG--LIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIV-SCG---EDRTVRIWSKENGS 257 (313)
T ss_dssp TTS--EEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEE-EEE---TTSEEEEECTTTCC
T ss_pred CCC--eEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEE-EEe---cCCEEEEEECCCCc
Confidence 664 79999998888766776566778888899988 343 332 24679999998875
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=98.91 E-value=8.5e-07 Score=94.78 Aligned_cols=238 Identities=9% Similarity=-0.006 Sum_probs=147.1
Q ss_pred EEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecccc--cceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCc
Q 004766 134 LIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADAL--SWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTE 211 (732)
Q Consensus 134 ~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~--~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~ 211 (732)
+..+.||++ ..++... + ..|++||+++|+...... .......++|+|||+.|+....+
T Consensus 96 ~~~~~~s~~-~l~~~~~--d----~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d------------- 155 (401)
T 4aez_A 96 LNLLDWSNL-NVVAVAL--E----RNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGN------------- 155 (401)
T ss_dssp CBCEEECTT-SEEEEEE--T----TEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETT-------------
T ss_pred EEEEeecCC-CEEEEEC--C----CeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCC-------------
Confidence 445778873 3444332 2 379999999998543211 12235789999999998887533
Q ss_pred ccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCC
Q 004766 212 TDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDG 291 (732)
Q Consensus 212 ~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 291 (732)
..|.+|++.++.. +..+. .+...+..+.| +++.++..+.+ ..+.++|+....
T Consensus 156 ------g~i~iwd~~~~~~--~~~~~--~~~~~v~~~~~--~~~~l~~~~~d-----g~i~i~d~~~~~----------- 207 (401)
T 4aez_A 156 ------GLVDIYDVESQTK--LRTMA--GHQARVGCLSW--NRHVLSSGSRS-----GAIHHHDVRIAN----------- 207 (401)
T ss_dssp ------SCEEEEETTTCCE--EEEEC--CCSSCEEEEEE--ETTEEEEEETT-----SEEEEEETTSSS-----------
T ss_pred ------CeEEEEECcCCeE--EEEec--CCCCceEEEEE--CCCEEEEEcCC-----CCEEEEecccCc-----------
Confidence 2588889876532 22222 22334556677 56776655432 348888987421
Q ss_pred CCCcEEeeecccceE-EEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecC-CEEEEEEec
Q 004766 292 LLPFVKLIDGFDAQY-EVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNL-NQMIVSYLS 369 (732)
Q Consensus 292 ~~~~~~l~~~~~~~~-~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~-~~l~~~~~~ 369 (732)
.....+........ ..|+|++..|+..+.. ..|..+|+.++.....+..+. ..+..+.++++ ..+++....
T Consensus 208 -~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d----~~v~iwd~~~~~~~~~~~~~~--~~v~~~~~~p~~~~ll~~~~g 280 (401)
T 4aez_A 208 -HQIGTLQGHSSEVCGLAWRSDGLQLASGGND----NVVQIWDARSSIPKFTKTNHN--AAVKAVAWCPWQSNLLATGGG 280 (401)
T ss_dssp -CEEEEEECCSSCEEEEEECTTSSEEEEEETT----SCEEEEETTCSSEEEEECCCS--SCCCEEEECTTSTTEEEEECC
T ss_pred -ceeeEEcCCCCCeeEEEEcCCCCEEEEEeCC----CeEEEccCCCCCccEEecCCc--ceEEEEEECCCCCCEEEEecC
Confidence 11222322222222 2488988877765543 368889998876334444443 56788999874 467766542
Q ss_pred CCeeEEEEEeCCCCceeeecccccceeeEeecccCCcEEEEEEecCCCCceEEEEECCCC
Q 004766 370 DVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTE 429 (732)
Q Consensus 370 ~g~~~l~~~d~~~g~~~~~l~~~~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~ 429 (732)
.....|++||+.+++.+..+. ....+..+.++++++.++.+..+ .-..++.||+.++
T Consensus 281 s~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~--~dg~i~v~~~~~~ 337 (401)
T 4aez_A 281 TMDKQIHFWNAATGARVNTVD-AGSQVTSLIWSPHSKEIMSTHGF--PDNNLSIWSYSSS 337 (401)
T ss_dssp TTTCEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECT--TTCEEEEEEEETT
T ss_pred CCCCEEEEEECCCCCEEEEEe-CCCcEEEEEECCCCCeEEEEeec--CCCcEEEEecCCc
Confidence 112579999998887766664 34567788899999877654322 2357888887776
|
| >2k2q_B Surfactin synthetase thioesterase subunit; A/B-hydrolase, NRPS, non-ribosomal peptide synthetase, type II thioesterase, antibiotic biosynthesis; NMR {Bacillus subtilis} PDB: 2ron_A | Back alignment and structure |
|---|
Probab=98.91 E-value=1.1e-09 Score=108.56 Aligned_cols=92 Identities=15% Similarity=0.144 Sum_probs=64.3
Q ss_pred CCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCccHHHHHHHHHHHHHHc-CC
Q 004766 479 GSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISA-GY 557 (732)
Q Consensus 479 ~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~-~~ 557 (732)
+..|.||++||..+... .|.. +...|. .+|.|+++|.||.|.... ...+|+.+.++.+.+. +.
T Consensus 11 ~~~~~lv~lhg~g~~~~--~~~~-~~~~L~-~~~~vi~~Dl~GhG~S~~------------~~~~~~~~~~~~~~~~l~~ 74 (242)
T 2k2q_B 11 SEKTQLICFPFAGGYSA--SFRP-LHAFLQ-GECEMLAAEPPGHGTNQT------------SAIEDLEELTDLYKQELNL 74 (242)
T ss_dssp TCCCEEESSCCCCHHHH--HHHH-HHHHHC-CSCCCEEEECCSSCCSCC------------CTTTHHHHHHHHTTTTCCC
T ss_pred CCCceEEEECCCCCCHH--HHHH-HHHhCC-CCeEEEEEeCCCCCCCCC------------CCcCCHHHHHHHHHHHHHh
Confidence 45678999999877642 3433 345566 689999999999886421 1235666666666543 22
Q ss_pred CCCCcEEEEecChhHHHHHHHHhh------CCCee
Q 004766 558 TQSRKLCIEGGSNGGLLVGACINQ------RPDLF 586 (732)
Q Consensus 558 ~d~~~i~i~G~S~GG~l~~~~~~~------~p~~f 586 (732)
...+++.++||||||+++..++.+ +|+..
T Consensus 75 ~~~~~~~lvGhSmGG~iA~~~A~~~~~~~~~p~~v 109 (242)
T 2k2q_B 75 RPDRPFVLFGHSMGGMITFRLAQKLEREGIFPQAV 109 (242)
T ss_dssp CCCSSCEEECCSSCCHHHHHHHHHHHHHHCSSCSE
T ss_pred hcCCCEEEEeCCHhHHHHHHHHHHHHHcCCCCCEE
Confidence 223689999999999999998875 67753
|
| >3lp5_A Putative cell surface hydrolase; structural genom PSI2, MCSG, protein structure initiative, midwest center FO structural genomics; 2.00A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=98.90 E-value=2.4e-08 Score=98.66 Aligned_cols=200 Identities=11% Similarity=0.006 Sum_probs=116.3
Q ss_pred ccEEEEEcCCCCccCCCCcChhHHHHHHhcC---cEEEEEcccCCCC--CchhHH--------hcccccCC------ccH
Q 004766 481 HPCLLYGYGGFNISVTPSFSVSRTILMRHLG---AVFCIANIRGGGE--YGEEWH--------KGGALAKK------QNC 541 (732)
Q Consensus 481 ~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G---~~v~~~~~rG~g~--~g~~~~--------~~~~~~~~------~~~ 541 (732)
.+.||++||..+... .|.. +...|.++| +.|+.+++++.|. +...+. .-+...+. ...
T Consensus 4 ~~pvv~iHG~~~~~~--~~~~-~~~~L~~~~~~~~~vi~~~v~~~G~~~~~G~~~~~~~~P~i~v~f~~n~~~~~~~~~~ 80 (250)
T 3lp5_A 4 MAPVIMVPGSSASQN--RFDS-LITELGKETPKKHSVLKLTVQTDGTIKYSGSIAANDNEPFIVIGFANNRDGKANIDKQ 80 (250)
T ss_dssp CCCEEEECCCGGGHH--HHHH-HHHHHHHHSSSCCCEEEEEECTTSCEEEEECCCTTCSSCEEEEEESCCCCSHHHHHHH
T ss_pred CCCEEEECCCCCCHH--HHHH-HHHHHHhcCCCCceEEEEEEecCCeEEEeeecCCCCcCCeEEEEeccCCCcccCHHHH
Confidence 456788999877532 3443 345565566 6777777765543 111110 00001111 112
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhC-----CCeeeEEEEcCCcccccccccCCCCCccccccCC
Q 004766 542 FDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQR-----PDLFGCALAHVGVMDMLRYHKFTIGHAWVSDFGC 616 (732)
Q Consensus 542 ~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~-----p~~f~a~v~~~p~~d~~~~~~~~~~~~~~~~~g~ 616 (732)
.+++.+++++|.++- ..+++.++||||||+++..++.++ |+..+.+|+..+..+-.... .
T Consensus 81 a~~l~~~~~~l~~~~--~~~~~~lvGHSmGg~~a~~~~~~~~~~~~~~~v~~lv~l~~p~~g~~~~-------------~ 145 (250)
T 3lp5_A 81 AVWLNTAFKALVKTY--HFNHFYALGHSNGGLIWTLFLERYLKESPKVHIDRLMTIASPYNMESTS-------------T 145 (250)
T ss_dssp HHHHHHHHHHHHTTS--CCSEEEEEEETHHHHHHHHHHHHTGGGSTTCEEEEEEEESCCTTTTCCC-------------S
T ss_pred HHHHHHHHHHHHHHc--CCCCeEEEEECHhHHHHHHHHHHccccccchhhCEEEEECCCCCccccc-------------c
Confidence 467778888887652 346899999999999999988876 67788887665543322110 0
Q ss_pred CCCHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEeeC----CCCCCCchHHHHHHHHHHHhhcCCCCCCCCCCCE
Q 004766 617 SEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTAD----HDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPI 692 (732)
Q Consensus 617 p~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~----~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 692 (732)
......++.|....+ .+. ...|+|+++|. +|..||...++.+...++.. ....
T Consensus 146 ~~~~~~~~~l~~~~~--~lp-----------~~vpvl~I~G~~~~~~Dg~Vp~~sa~~l~~l~~~~----------~~~~ 202 (250)
T 3lp5_A 146 TAKTSMFKELYRYRT--GLP-----------ESLTVYSIAGTENYTSDGTVPYNSVNYGKYIFQDQ----------VKHF 202 (250)
T ss_dssp SCCCHHHHHHHHTGG--GSC-----------TTCEEEEEECCCCCCTTTBCCHHHHTTHHHHHTTT----------SSEE
T ss_pred cccCHHHHHHHhccc--cCC-----------CCceEEEEEecCCCCCCceeeHHHHHHHHHHhccc----------ccce
Confidence 011123444433211 111 24699999999 99999988887766666542 2333
Q ss_pred EEEEeC--CCCCCCCCchHHHHHHHHHHHHHHHH
Q 004766 693 IGRIER--KAGHGVGLPTQKMIDEAADRYGFMAK 724 (732)
Q Consensus 693 ~~~~~~--~~gH~~~~~~~~~~~~~~~~~~fl~~ 724 (732)
....+. +++|...... -+..+.+..||.+
T Consensus 203 ~~~~v~g~~a~H~~l~e~---~~v~~~I~~FL~~ 233 (250)
T 3lp5_A 203 TEITVTGANTAHSDLPQN---KQIVSLIRQYLLA 233 (250)
T ss_dssp EEEECTTTTBSSCCHHHH---HHHHHHHHHHTSC
T ss_pred EEEEEeCCCCchhcchhC---HHHHHHHHHHHhc
Confidence 334444 4679765322 2566677778753
|
| >1gpl_A RP2 lipase; serine esterase, hydrolase, lipid degradation, pancreas, glycoprotein, chimeric; 2.01A {Cavia porcellus} SCOP: b.12.1.2 c.69.1.19 PDB: 1lpb_B* 1lpa_B* 1n8s_A | Back alignment and structure |
|---|
Probab=98.90 E-value=2.7e-09 Score=114.81 Aligned_cols=113 Identities=12% Similarity=-0.034 Sum_probs=80.1
Q ss_pred CCccEEEEEcCCCCccCCCCcChhHHHHHH-hcCcEEEEEcccCCCCCchhHHhcccccCCccHHHHHHHHHHHHHHcCC
Q 004766 479 GSHPCLLYGYGGFNISVTPSFSVSRTILMR-HLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGY 557 (732)
Q Consensus 479 ~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~-~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~ 557 (732)
...|+||++||..+.. ...|...+...|. ..||.|+++|.||.|.... .... ..-....+|+.+.+++|.++.-
T Consensus 68 ~~~~~vvllHG~~~s~-~~~w~~~~~~~l~~~~~~~Vi~~D~~g~g~s~~--~~~~--~~~~~~~~dl~~~i~~l~~~~g 142 (432)
T 1gpl_A 68 LNRKTRFIIHGFTDSG-ENSWLSDMCKNMFQVEKVNCICVDWKGGSKAQY--SQAS--QNIRVVGAEVAYLVQVLSTSLN 142 (432)
T ss_dssp TTSEEEEEECCTTCCT-TSHHHHHHHHHHHHHCCEEEEEEECHHHHTSCH--HHHH--HHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCeEEEECCCCCCC-CchHHHHHHHHHHhcCCcEEEEEECccccCccc--hhhH--hhHHHHHHHHHHHHHHHHHhcC
Confidence 4679999999987654 2234442333344 3699999999999775432 1110 0112334788888888875533
Q ss_pred CCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCcc
Q 004766 558 TQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVM 596 (732)
Q Consensus 558 ~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~ 596 (732)
++.+++.++|||+||.+++.++.++|++++.+++..|..
T Consensus 143 ~~~~~i~lvGhSlGg~vA~~~a~~~p~~v~~iv~l~pa~ 181 (432)
T 1gpl_A 143 YAPENVHIIGHSLGAHTAGEAGKRLNGLVGRITGLDPAE 181 (432)
T ss_dssp CCGGGEEEEEETHHHHHHHHHHHTTTTCSSEEEEESCBC
T ss_pred CCcccEEEEEeCHHHHHHHHHHHhcccccceeEEecccc
Confidence 467899999999999999999999999999988876643
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.88 E-value=1.7e-07 Score=101.47 Aligned_cols=244 Identities=14% Similarity=0.108 Sum_probs=141.9
Q ss_pred EEEEeEEECC-CCcEEEEEEeccCCceEEEEEEECCC---Cceec--cc-ccceeeeeEEEEeCCcEEEEEEecCCCCCC
Q 004766 132 AALIKVSVSE-DAKYLAYALSYSGSDWATIKLMRIED---QIVEA--DA-LSWFKFSSIAWTHDSKGFFYSRYPAPKEGK 204 (732)
Q Consensus 132 ~~~~~~~~SP-DG~~la~~~~~~G~e~~~i~v~dl~~---g~~~~--~~-~~~~~~~~~~WspDg~~l~y~~~~~~~~~~ 204 (732)
..+..++||| ||++||... ...+|+|||+.+ +.... .. ........++|+||++.|+....+
T Consensus 64 ~~V~~~~~s~~~~~~l~s~s-----~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d------ 132 (437)
T 3gre_A 64 NSITSSAVSPGETPYLITGS-----DQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSKD------ 132 (437)
T ss_dssp SCEEEEEEECSSSCEEEEEE-----TTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEEETT------
T ss_pred CceEEEEECCCCCCEEEEec-----CCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEEeCC------
Confidence 4577899999 999988664 224899999977 44221 11 112235789999999988877543
Q ss_pred CCCCCCcccCCcccEEEEEECC---CCCCCCe----EEE--ecCC--CCeeEEEeE--EecCCcEEEEEEecCCcceEEE
Q 004766 205 DMDAGTETDSNLYHEFYYHFLG---TKQSEDI----LCW--KDPE--HPKYIFSGH--VTEDGQYLVMCIEENCDPVNKV 271 (732)
Q Consensus 205 ~~~~~~~~~~~~~~~v~~~~lg---t~~~~~~----~v~--~~~~--~~~~~~~~~--~SpDg~~l~~~~~~~~~~~~~l 271 (732)
..|.+|++. ++..... .+. .... .......+. +++|+++|+....+ ..|
T Consensus 133 -------------g~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----~~i 194 (437)
T 3gre_A 133 -------------GQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNL-----SRV 194 (437)
T ss_dssp -------------SEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETT-----SEE
T ss_pred -------------CEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCC-----CeE
Confidence 257777764 2211100 010 0000 112223333 67899988776543 348
Q ss_pred EEEeCCCCCCCcccccccCCCCCcEEeee--cccceE-EEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEec-cCC
Q 004766 272 YYCDLSALPEGLEGFKKRDGLLPFVKLID--GFDAQY-EVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVI-PEA 347 (732)
Q Consensus 272 ~~~d~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~-~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~-~~~ 347 (732)
.++|+.++. ....+.. ...... ..|+|+++.|+..+.. ..|..+|+.++.....+. ++
T Consensus 195 ~iwd~~~~~-------------~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~~- 256 (437)
T 3gre_A 195 IIFDIRTLE-------------RLQIIENSPRHGAVSSICIDEECCVLILGTTR----GIIDIWDIRFNVLIRSWSFGD- 256 (437)
T ss_dssp EEEETTTCC-------------EEEEEECCGGGCCEEEEEECTTSCEEEEEETT----SCEEEEETTTTEEEEEEBCTT-
T ss_pred EEEeCCCCe-------------eeEEEccCCCCCceEEEEECCCCCEEEEEcCC----CeEEEEEcCCccEEEEEecCC-
Confidence 889987742 1233332 112122 2488998877765443 468889988765333332 33
Q ss_pred CCCceeEEEEec----CCEEEEEEecCCeeEEEEEeCCCCceeeecccc--------------------------cceee
Q 004766 348 ERDVLESATAVN----LNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIE--------------------------IGSVN 397 (732)
Q Consensus 348 ~~~~l~~~~~~~----~~~l~~~~~~~g~~~l~~~d~~~g~~~~~l~~~--------------------------~g~v~ 397 (732)
...+..+.+.+ ++.++++...+ ..|++||+.+++.+..+... .+.+.
T Consensus 257 -~~~v~~~~~~~~~s~~~~~l~s~~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~ 333 (437)
T 3gre_A 257 -HAPITHVEVCQFYGKNSVIVVGGSSK--TFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALS 333 (437)
T ss_dssp -CEEEEEEEECTTTCTTEEEEEEESTT--EEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGC
T ss_pred -CCceEEEEeccccCCCccEEEEEcCC--CcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceE
Confidence 24677775553 34577777777 47999999878754444321 11233
Q ss_pred EeecccCCcEEEEEEecCCCCceEEEEECCCCC
Q 004766 398 AISARREDSVVFISFTSFLIPGIVYQCNLKTET 430 (732)
Q Consensus 398 ~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~~ 430 (732)
.+.++ +++ ++++.+. -..++.||+.+++
T Consensus 334 ~l~~~-~~~-~l~s~~~---d~~i~~wd~~~~~ 361 (437)
T 3gre_A 334 TISVS-NDK-ILLTDEA---TSSIVMFSLNELS 361 (437)
T ss_dssp CEEEE-TTE-EEEEEGG---GTEEEEEETTCGG
T ss_pred EEEEC-Cce-EEEecCC---CCeEEEEECCCcc
Confidence 44555 443 4444433 3589999998875
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=98.88 E-value=2.7e-07 Score=104.34 Aligned_cols=241 Identities=11% Similarity=0.065 Sum_probs=146.8
Q ss_pred EEeEEECC--CCcEEEEEEeccCCceEEEEEEECCCC--------ceecc-cccceeeeeEEEEeCCcEEEEEEecCCCC
Q 004766 134 LIKVSVSE--DAKYLAYALSYSGSDWATIKLMRIEDQ--------IVEAD-ALSWFKFSSIAWTHDSKGFFYSRYPAPKE 202 (732)
Q Consensus 134 ~~~~~~SP--DG~~la~~~~~~G~e~~~i~v~dl~~g--------~~~~~-~~~~~~~~~~~WspDg~~l~y~~~~~~~~ 202 (732)
+..++||| ||++||.... ...|++||+.++ ..+.. .........++|+|||+.|+....+.
T Consensus 67 v~~~~~sp~~~~~~l~s~~~-----dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~--- 138 (615)
T 1pgu_A 67 VTTVKFSPIKGSQYLCSGDE-----SGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGR--- 138 (615)
T ss_dssp EEEEEECSSTTCCEEEEEET-----TSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCS---
T ss_pred EEEEEECcCCCCCEEEEecC-----CCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCC---
Confidence 77899999 9999987642 247999999766 22211 11122357899999999998876432
Q ss_pred CCCCCCCCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCC
Q 004766 203 GKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEG 282 (732)
Q Consensus 203 ~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~ 282 (732)
.....|+.|+.+. .+.....+...+..+.|+|+|+++++..... ..+.++|+.++.
T Consensus 139 ------------~~~~~v~~~d~~~------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d----~~v~vwd~~~~~-- 194 (615)
T 1pgu_A 139 ------------DNFGVFISWDSGN------SLGEVSGHSQRINACHLKQSRPMRSMTVGDD----GSVVFYQGPPFK-- 194 (615)
T ss_dssp ------------SCSEEEEETTTCC------EEEECCSCSSCEEEEEECSSSSCEEEEEETT----TEEEEEETTTBE--
T ss_pred ------------CCccEEEEEECCC------cceeeecCCccEEEEEECCCCCcEEEEEeCC----CcEEEEeCCCcc--
Confidence 1224577777332 2222233344567899999999655554432 347788877632
Q ss_pred cccccccCCCCCcEEeeeccc---ce-EEEEEec-CCeEEEEeCCCCCCceEEEEeCCCCCCceEeccC--CCCCceeEE
Q 004766 283 LEGFKKRDGLLPFVKLIDGFD---AQ-YEVIAND-DTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPE--AERDVLESA 355 (732)
Q Consensus 283 ~~~~~~~~~~~~~~~l~~~~~---~~-~~~~s~d-g~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~--~~~~~l~~~ 355 (732)
....+..... .. ...|+|+ |+.|+..+. ...|..+|+.+++....+... .....+..+
T Consensus 195 -----------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~----dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~ 259 (615)
T 1pgu_A 195 -----------FSASDRTHHKQGSFVRDVEFSPDSGEFVITVGS----DRKISCFDGKSGEFLKYIEDDQEPVQGGIFAL 259 (615)
T ss_dssp -----------EEEEECSSSCTTCCEEEEEECSTTCCEEEEEET----TCCEEEEETTTCCEEEECCBTTBCCCSCEEEE
T ss_pred -----------eeeeecccCCCCceEEEEEECCCCCCEEEEEeC----CCeEEEEECCCCCEeEEecccccccCCceEEE
Confidence 1222222222 11 2358998 877776544 236888999887633333120 223567888
Q ss_pred EEecCCEEEEEEecCCeeEEEEEeCCCCceeeecccc----cceeeEeecccCCcEEEEEEecCCCCceEEEEECCCC
Q 004766 356 TAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIE----IGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTE 429 (732)
Q Consensus 356 ~~~~~~~l~~~~~~~g~~~l~~~d~~~g~~~~~l~~~----~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~ 429 (732)
.++ ++.++++...++ .|.+||+.+++.+..+..+ ...+..+.++ +++.++... . -..++.||+.++
T Consensus 260 ~~~-~~~~l~~~~~d~--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~-~---~g~i~~~d~~~~ 329 (615)
T 1pgu_A 260 SWL-DSQKFATVGADA--TIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLS-L---DGTLNFYELGHD 329 (615)
T ss_dssp EES-SSSEEEEEETTS--EEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEE-T---TSCEEEEETTEE
T ss_pred EEc-CCCEEEEEcCCC--cEEEEECCCCcEEEEEcCCCCcccCceeEEEeC-CCCeEEEEE-C---CCCEEEEECCCC
Confidence 888 667777777764 6889999888766666543 1333344443 566554332 2 356888887765
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.88 E-value=9.1e-08 Score=111.44 Aligned_cols=245 Identities=12% Similarity=-0.011 Sum_probs=147.3
Q ss_pred CCEEEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCc--eecc-cccceeeeeEEEEeC--CcEEEEEEecCCCCCC
Q 004766 130 GTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQI--VEAD-ALSWFKFSSIAWTHD--SKGFFYSRYPAPKEGK 204 (732)
Q Consensus 130 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~--~~~~-~~~~~~~~~~~WspD--g~~l~y~~~~~~~~~~ 204 (732)
+.-.+..+.|||||++|+.+.. + ..|+|||+.++. .+.. ......+..++|+|+ ++.|+....+.
T Consensus 8 H~~~V~~l~~s~dg~~latg~~-d----g~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg----- 77 (753)
T 3jro_A 8 HNELIHDAVLDYYGKRLATCSS-D----KTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDG----- 77 (753)
T ss_dssp CCCCEEEECCCSSSCCEEEEET-T----TEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTS-----
T ss_pred CcceeEEEEECCCCCeEEEEEC-C----CcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCC-----
Confidence 3345778999999998886632 2 379999998543 2211 111223578999998 88888775433
Q ss_pred CCCCCCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecC--CcEEEEEEecCCcceEEEEEEeCCCCCCC
Q 004766 205 DMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTED--GQYLVMCIEENCDPVNKVYYCDLSALPEG 282 (732)
Q Consensus 205 ~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpD--g~~l~~~~~~~~~~~~~l~~~d~~~~~~~ 282 (732)
.|++|++.++... .+.....+...+..+.|+|+ |+.++..+.+ ..|.++|+.++..
T Consensus 78 --------------~I~vwd~~~~~~~--~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~d-----g~I~vwdl~~~~~- 135 (753)
T 3jro_A 78 --------------KVLIWKEENGRWS--QIAVHAVHSASVNSVQWAPHEYGPLLLVASSD-----GKVSVVEFKENGT- 135 (753)
T ss_dssp --------------CEEEEEEETTEEE--EEEEECCCSSCEEEEEECCGGGCSEEEEEETT-----SEEEEEECCSSSC-
T ss_pred --------------eEEEEECCCCccc--ccccccCCCCCeEEEEECCCCCCCEEEEEeCC-----CcEEEEEeecCCC-
Confidence 5888888765322 22222223445678999999 8988776543 3488888876421
Q ss_pred cccccccCCCCCcEEeeecccce-EEEEEe-------------cCCeEEEEeCCCCCCceEEEEeCCCCCC----ceEec
Q 004766 283 LEGFKKRDGLLPFVKLIDGFDAQ-YEVIAN-------------DDTVFTFLTNKDAPKYKIIRVDLKEPND----WFEVI 344 (732)
Q Consensus 283 ~~~~~~~~~~~~~~~l~~~~~~~-~~~~s~-------------dg~~l~~~s~~~~~~~~l~~~d~~~~~~----~~~l~ 344 (732)
.....+....... ...|+| +++.++..+.. +.|..+|+.++.. ...+.
T Consensus 136 ----------~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~d----g~I~iwd~~~~~~~~~~~~~~~ 201 (753)
T 3jro_A 136 ----------TSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGAD----NLVKIWKYNSDAQTYVLESTLE 201 (753)
T ss_dssp ----------CCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETT----SCEEEEEEETTTTEEEEEEEEC
T ss_pred ----------cceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECC----CeEEEEeccCCcccceeeeeec
Confidence 1112222211111 124677 56766655443 3477777765531 12222
Q ss_pred cCCCCCceeEEEEecC---CEEEEEEecCCeeEEEEEeCCCCcee--eec-cc--ccceeeEeecccCCcEEEEEEecCC
Q 004766 345 PEAERDVLESATAVNL---NQMIVSYLSDVKYVLQIRDLKNGSLL--HQL-PI--EIGSVNAISARREDSVVFISFTSFL 416 (732)
Q Consensus 345 ~~~~~~~l~~~~~~~~---~~l~~~~~~~g~~~l~~~d~~~g~~~--~~l-~~--~~g~v~~~~~s~d~~~l~~~~ss~~ 416 (732)
.+. ..+..+.++++ +.++++...++ .|++||+.+++.. ..+ .. ..+.+..+.+++++..++.. +.
T Consensus 202 ~h~--~~V~~l~~sp~~~~~~~l~s~s~Dg--~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~-s~-- 274 (753)
T 3jro_A 202 GHS--DWVRDVAWSPTVLLRSYLASVSQDR--TCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALS-GG-- 274 (753)
T ss_dssp CCS--SCEEEEEECCCCSSSEEEEEEESSS--CEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEE-CS--
T ss_pred CCC--CcEEEEEeccCCCCCCEEEEEecCC--EEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEE-cC--
Confidence 333 56888999987 68888888775 6888888765321 111 11 24556678888998865433 22
Q ss_pred CCceEEEEECCC
Q 004766 417 IPGIVYQCNLKT 428 (732)
Q Consensus 417 ~p~~~y~~d~~~ 428 (732)
-..++.|++.+
T Consensus 275 -Dg~I~vwd~~~ 285 (753)
T 3jro_A 275 -DNKVTLWKENL 285 (753)
T ss_dssp -SSCEECCBCCS
T ss_pred -CCEEEEEecCC
Confidence 35677777764
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=98.87 E-value=6.7e-07 Score=94.15 Aligned_cols=92 Identities=13% Similarity=0.124 Sum_probs=59.2
Q ss_pred EEEecCCeEEEEeCCCC-------CCceEEEEeCCCCCCceEeccCCCCCceeEEEEecCCEEEEEEecCCeeEEEEEeC
Q 004766 308 VIANDDTVFTFLTNKDA-------PKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDL 380 (732)
Q Consensus 308 ~~s~dg~~l~~~s~~~~-------~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~~l~~~~~~~g~~~l~~~d~ 380 (732)
.+++|++++|+....++ ....|+.+|+++.+....+ +-. . ..++.++++++.++.... ..|.+||.
T Consensus 260 a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i-~~~--~-p~~ia~spdg~~l~v~n~---~~v~v~D~ 332 (361)
T 2oiz_A 260 GLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARI-PGR--D-ALSMTIDQQRNLMLTLDG---GNVNVYDI 332 (361)
T ss_dssp EEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEE-ECT--T-CCEEEEETTTTEEEEECS---SCEEEEEC
T ss_pred EEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEE-ecC--C-eeEEEECCCCCEEEEeCC---CeEEEEEC
Confidence 57899999987653111 2347999999987633333 332 2 678899986554444443 67999999
Q ss_pred CCC--ceeeecccccceeeEeecccCCc
Q 004766 381 KNG--SLLHQLPIEIGSVNAISARREDS 406 (732)
Q Consensus 381 ~~g--~~~~~l~~~~g~v~~~~~s~d~~ 406 (732)
+++ +.+..+.........+.++|+|.
T Consensus 333 ~t~~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 333 SQPEPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp SSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred CCCcceeeEEeccCCCCcEEEEecCCCC
Confidence 999 77666532122233566778775
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=98.86 E-value=3.1e-06 Score=88.48 Aligned_cols=245 Identities=13% Similarity=0.118 Sum_probs=134.5
Q ss_pred eEEECCCCcEEEEEEec-----cCCceEEEEEEECCCCceeccc-cc-------ceeeeeEEEEeCCcEEEEEEecCCCC
Q 004766 136 KVSVSEDAKYLAYALSY-----SGSDWATIKLMRIEDQIVEADA-LS-------WFKFSSIAWTHDSKGFFYSRYPAPKE 202 (732)
Q Consensus 136 ~~~~SPDG~~la~~~~~-----~G~e~~~i~v~dl~~g~~~~~~-~~-------~~~~~~~~WspDg~~l~y~~~~~~~~ 202 (732)
.+.+||||++|..+... .|.....|.++|.++++.+... .. +.....+++||||+++|++...
T Consensus 82 ~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~---- 157 (386)
T 3sjl_D 82 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFS---- 157 (386)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECS----
T ss_pred cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcC----
Confidence 38999999987665421 2223457999999999865321 11 1123679999999998876421
Q ss_pred CCCCCCCCcccCCcccEEEEEECCCCCCCCeEEEecCCCCe-eE----EEeEEecCCcEEEEEEecCCcceEEEEEEeCC
Q 004766 203 GKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPK-YI----FSGHVTEDGQYLVMCIEENCDPVNKVYYCDLS 277 (732)
Q Consensus 203 ~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~-~~----~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~ 277 (732)
....|.++++.+......+ ..+.... +- .-+..++||+.+++....... + .+..
T Consensus 158 -------------~~~~VsVID~~t~~vv~tI--~v~g~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~----v--~~~~ 216 (386)
T 3sjl_D 158 -------------PAPAVGVVDLEGKAFKRML--DVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGT----P--EITH 216 (386)
T ss_dssp -------------SSCEEEEEETTTTEEEEEE--ECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSC----C--EEEE
T ss_pred -------------CCCeEEEEECCCCcEEEEE--ECCCcceeecCCCceeEEECCCCCEEEEECCCCCe----E--EEee
Confidence 1246778887765322111 1110000 00 013667788776655432111 1 0100
Q ss_pred CCCCCcccccccCCCCCcEEeeecccceEEEEE-ecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCC---------
Q 004766 278 ALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIA-NDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEA--------- 347 (732)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s-~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~--------- 347 (732)
+.. +.. . ...+.. ...|. ++| +++|.+.. .+++.+|+.+.. .+ ++..-
T Consensus 217 ~~~-----~~~---~--~~~~~~-----~~~~~~~dG-~~~~vs~~----g~V~v~d~~~~~-~~-v~~~~~~~~~~~~~ 274 (386)
T 3sjl_D 217 TEV-----FHP---E--DEFLIN-----HPAYSQKAG-RLVWPTYT----GKIHQIDLSSGD-AK-FLPAVEALTEAERA 274 (386)
T ss_dssp CCC-----CSC---T--TSCBCS-----CCEEETTTT-EEEEEBTT----SEEEEEECTTSS-CE-ECCCEESSCHHHHH
T ss_pred cce-----ecc---c--cccccc-----cceeEcCCC-cEEEEeCC----CEEEEEECCCCc-ce-eecceecccccccc
Confidence 100 000 0 000100 01243 455 66666662 479999987654 11 11100
Q ss_pred CC---CceeEEEEecC-CEEEEEEecC-------CeeEEEEEeCCCCceeeecccccceeeEeecccCCcEEEEEEecCC
Q 004766 348 ER---DVLESATAVNL-NQMIVSYLSD-------VKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFL 416 (732)
Q Consensus 348 ~~---~~l~~~~~~~~-~~l~~~~~~~-------g~~~l~~~d~~~g~~~~~l~~~~g~v~~~~~s~d~~~l~~~~ss~~ 416 (732)
.. ...+.+.++++ +++|+....+ .-.+|+++|+++++.+++|.++. .+.++.+++|++.++|..+.
T Consensus 275 ~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~-~~~~lavs~D~~~~ly~tn~-- 351 (386)
T 3sjl_D 275 DGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGH-EIDSINVSQDEKPLLYALST-- 351 (386)
T ss_dssp TTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE-EECEEEECSSSSCEEEEEET--
T ss_pred ccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCC-CcceEEECCCCCeEEEEEcC--
Confidence 00 01223555653 6788876532 23689999999999888887653 34467889999744444332
Q ss_pred CCceEEEEECCCCC
Q 004766 417 IPGIVYQCNLKTET 430 (732)
Q Consensus 417 ~p~~~y~~d~~~~~ 430 (732)
....+..+|..+++
T Consensus 352 ~~~~VsViD~~t~k 365 (386)
T 3sjl_D 352 GDKTLYIHDAESGE 365 (386)
T ss_dssp TTTEEEEEETTTCC
T ss_pred CCCeEEEEECCCCc
Confidence 24689999999886
|
| >2bce_A Cholesterol esterase; hydrolase, serine esterase, lipase; 1.60A {Bos taurus} SCOP: c.69.1.1 PDB: 1akn_A* 1aql_A* 1f6w_A 1jmy_A | Back alignment and structure |
|---|
Probab=98.86 E-value=3.6e-09 Score=117.62 Aligned_cols=133 Identities=17% Similarity=0.159 Sum_probs=87.4
Q ss_pred EccCCCeeEEEEEEEcCCCC-CCCCccEEEEEcCCCCccCC---CCc----ChhHHHHHHhcCcEEEEEcccCCC-CCch
Q 004766 457 PSKDGSTKIPMFIVSKKNIK-LDGSHPCLLYGYGGFNISVT---PSF----SVSRTILMRHLGAVFCIANIRGGG-EYGE 527 (732)
Q Consensus 457 ~s~dG~~~i~~~~~~p~~~~-~~~~~P~vv~~hG~~~~~~~---~~~----~~~~~~~l~~~G~~v~~~~~rG~g-~~g~ 527 (732)
.+.|. +.+.++.|+... .+++.|+||++|||...... ..+ ......+..+.|++|+.+|||.+. +|..
T Consensus 76 ~sedc---l~lnv~~P~~~~~~~~~~PV~v~iHGGg~~~Gs~~~~~~~~~~~~~~~~la~~~~vvvV~~nYRLg~~Gfl~ 152 (579)
T 2bce_A 76 GNEDC---LYLNIWVPQGRKEVSHDLPVMIWIYGGAFLMGASQGANFLSNYLYDGEEIATRGNVIVVTFNYRVGPLGFLS 152 (579)
T ss_dssp SCSCC---CEEEEEEEECSSSCCCSEEEEEECCCCSEEEC-------CTTGGGCCHHHHHHHTCEEEEECCCCHHHHHCC
T ss_pred CCCCC---CEEEEEECCCCCCCCCCCeEEEEECCCcccCCCCCccccccccccChHHHhcCCCEEEEEeCCccccccCCc
Confidence 34555 445566786542 34678999999999532211 111 111134445468999999999532 2111
Q ss_pred hHHhccccc-CCccHHHHHHHHHHHHHHcC---CCCCCcEEEEecChhHHHHHHHHhh--CCCeeeEEEEcCCcc
Q 004766 528 EWHKGGALA-KKQNCFDDFISASEYLISAG---YTQSRKLCIEGGSNGGLLVGACINQ--RPDLFGCALAHVGVM 596 (732)
Q Consensus 528 ~~~~~~~~~-~~~~~~~D~~~~~~~l~~~~---~~d~~~i~i~G~S~GG~l~~~~~~~--~p~~f~a~v~~~p~~ 596 (732)
..... .+...+.|+.+|++|+.++- -.||+||.|+|+|+||.+++.++.. ...+|+++|+.+|..
T Consensus 153 ----~~~~~~pgn~gl~D~~~Al~wv~~ni~~fGgDp~~Vti~G~SAGg~~~~~~~~~~~~~~lf~~ai~~Sg~~ 223 (579)
T 2bce_A 153 ----TGDSNLPGNYGLWDQHMAIAWVKRNIEAFGGDPDQITLFGESAGGASVSLQTLSPYNKGLIKRAISQSGVG 223 (579)
T ss_dssp ----CSSTTCCCCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGTTTCSEEEEESCCT
T ss_pred ----CCCCCCCCccchHHHHHHHHHHHHHHHHhCCCcccEEEecccccchheeccccCcchhhHHHHHHHhcCCc
Confidence 11111 12235899999999998762 3699999999999999999988764 356999999988753
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=98.85 E-value=5.7e-07 Score=93.20 Aligned_cols=242 Identities=11% Similarity=0.068 Sum_probs=141.9
Q ss_pred EEEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecccc-cceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCC
Q 004766 132 AALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADAL-SWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGT 210 (732)
Q Consensus 132 ~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~-~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~ 210 (732)
..+..+.|||||++|+-.. ....|++++...+....... .........|+++++.|+....+.
T Consensus 87 ~~V~~~~~s~dg~~l~s~~-----~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~----------- 150 (340)
T 4aow_A 87 HFVSDVVISSDGQFALSGS-----WDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDK----------- 150 (340)
T ss_dssp SCEEEEEECTTSSEEEEEE-----TTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTS-----------
T ss_pred CCEEEEEECCCCCEEEEEc-----ccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCC-----------
Confidence 4577899999999988553 22478999998876432211 111235678899999887765332
Q ss_pred cccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccC
Q 004766 211 ETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRD 290 (732)
Q Consensus 211 ~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~ 290 (732)
.+.+|++.... ........+......+.+++++...++.+.... ..+.++|+.++.
T Consensus 151 --------~~~~~d~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d---~~i~i~d~~~~~---------- 206 (340)
T 4aow_A 151 --------TIKLWNTLGVC---KYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWD---KLVKVWNLANCK---------- 206 (340)
T ss_dssp --------CEEEECTTSCE---EEEECSSSCSSCEEEEEECSCSSSCEEEEEETT---SCEEEEETTTTE----------
T ss_pred --------eEEEEEeCCCc---eEEEEeccccCcccceEEccCCCCcEEEEEcCC---CEEEEEECCCCc----------
Confidence 46667665332 122222222334556788888765433332222 337788887632
Q ss_pred CCCCcEEeeecccceE-EEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecCCEEEEEEec
Q 004766 291 GLLPFVKLIDGFDAQY-EVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLS 369 (732)
Q Consensus 291 ~~~~~~~l~~~~~~~~-~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~~l~~~~~~ 369 (732)
....+........ ..|+|+|+.|+..+. +..|..+|+.+......+ .. ...+..+.+++++.++... .
T Consensus 207 ---~~~~~~~h~~~v~~~~~s~~~~~l~s~s~----Dg~i~iwd~~~~~~~~~~-~~--~~~v~~~~~~~~~~~~~~~-~ 275 (340)
T 4aow_A 207 ---LKTNHIGHTGYLNTVTVSPDGSLCASGGK----DGQAMLWDLNEGKHLYTL-DG--GDIINALCFSPNRYWLCAA-T 275 (340)
T ss_dssp ---EEEEECCCSSCEEEEEECTTSSEEEEEET----TCEEEEEETTTTEEEEEE-EC--SSCEEEEEECSSSSEEEEE-E
T ss_pred ---eeeEecCCCCcEEEEEECCCCCEEEEEeC----CCeEEEEEeccCceeeee-cC--CceEEeeecCCCCceeecc-C
Confidence 1222222111111 248899887765443 346888998876533333 22 2457778888855565554 4
Q ss_pred CCeeEEEEEeCCCCceeeeccc---------ccceeeEeecccCCcEEEEEEecCCCCceEEEEECCCCC
Q 004766 370 DVKYVLQIRDLKNGSLLHQLPI---------EIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 430 (732)
Q Consensus 370 ~g~~~l~~~d~~~g~~~~~l~~---------~~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~~ 430 (732)
+ ..|++||+.++.....+.. ....|..+++++|++.|+ +.+. -..++.||+.+|+
T Consensus 276 d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~-sgs~---Dg~v~iW~~~tGt 339 (340)
T 4aow_A 276 G--PSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLF-AGYT---DNLVRVWQVTIGT 339 (340)
T ss_dssp T--TEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEE-EEET---TSCEEEEEEEC--
T ss_pred C--CEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEE-EEeC---CCEEEEEeCCCcC
Confidence 4 3689999986654333321 244577888999998654 3333 2468888988874
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=98.85 E-value=4.2e-07 Score=98.28 Aligned_cols=246 Identities=10% Similarity=0.017 Sum_probs=143.5
Q ss_pred EEeEEECCCCcEEEEEEeccCCceEEEEEEECCC----------Cceec-ccccceeeeeEEEEeCCc-EEEEEEecCCC
Q 004766 134 LIKVSVSEDAKYLAYALSYSGSDWATIKLMRIED----------QIVEA-DALSWFKFSSIAWTHDSK-GFFYSRYPAPK 201 (732)
Q Consensus 134 ~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~----------g~~~~-~~~~~~~~~~~~WspDg~-~l~y~~~~~~~ 201 (732)
+..++|+|++..++++.... ..|++||+.+ +..+. ..........++|+|+++ .|+...
T Consensus 131 v~~l~~~p~~~~~lat~~~d----g~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~----- 201 (430)
T 2xyi_A 131 VNRARYMPQNACVIATKTPS----SDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS----- 201 (430)
T ss_dssp CSEEEEETTEEEEEEEECSS----SCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC-----
T ss_pred EEEEEECCCCCcEEEEECCC----CcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe-----
Confidence 55788999855444444333 3699999976 22211 111122347899999998 555442
Q ss_pred CCCCCCCCCcccCCcccEEEEEECCCCCCCC-----eEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeC
Q 004766 202 EGKDMDAGTETDSNLYHEFYYHFLGTKQSED-----ILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDL 276 (732)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~-----~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~ 276 (732)
....|.+|++.++.... ...+. .+...+..++|+|++..++++.... ..|+++|+
T Consensus 202 --------------~dg~i~vwd~~~~~~~~~~~~~~~~~~--~h~~~v~~v~~~p~~~~~l~s~~~d----g~i~i~d~ 261 (430)
T 2xyi_A 202 --------------DDHTICLWDINATPKEHRVIDAKNIFT--GHTAVVEDVAWHLLHESLFGSVADD----QKLMIWDT 261 (430)
T ss_dssp --------------TTSCEEEEETTSCCBGGGEEECSEEEC--CCSSCEEEEEECSSCTTEEEEEETT----SEEEEEET
T ss_pred --------------CCCeEEEEeCCCCCCCCceeccceeec--CCCCCEeeeEEeCCCCCEEEEEeCC----CeEEEEEC
Confidence 22358889987643221 12222 2233467899999655554444322 35888898
Q ss_pred CCCCCCcccccccCCCCCcEEeeeccc-ceEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCC-CceEeccCCCCCceeE
Q 004766 277 SALPEGLEGFKKRDGLLPFVKLIDGFD-AQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPN-DWFEVIPEAERDVLES 354 (732)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~-~~~~l~~~~~~~~l~~ 354 (732)
.++.. ..+...+..... .....|+|+++.+++....+ ..|..+|+.+.. ....+..+. ..+..
T Consensus 262 ~~~~~----------~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~d---g~v~vwd~~~~~~~~~~~~~h~--~~v~~ 326 (430)
T 2xyi_A 262 RNNNT----------SKPSHTVDAHTAEVNCLSFNPYSEFILATGSAD---KTVALWDLRNLKLKLHSFESHK--DEIFQ 326 (430)
T ss_dssp TCSCS----------SSCSEEEECCSSCEEEEEECSSCTTEEEEEETT---SEEEEEETTCTTSCSEEEECCS--SCEEE
T ss_pred CCCCC----------CcceeEeecCCCCeEEEEeCCCCCCEEEEEeCC---CeEEEEeCCCCCCCeEEeecCC--CCEEE
Confidence 76320 112223322211 12235899888766655443 468889987743 234444443 56888
Q ss_pred EEEecCC-EEEEEEecCCeeEEEEEeCCCC--------------ceeeecccccceeeEeecccCCcEEEEEEecCCCCc
Q 004766 355 ATAVNLN-QMIVSYLSDVKYVLQIRDLKNG--------------SLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPG 419 (732)
Q Consensus 355 ~~~~~~~-~l~~~~~~~g~~~l~~~d~~~g--------------~~~~~l~~~~g~v~~~~~s~d~~~l~~~~ss~~~p~ 419 (732)
+.|++++ .++++...++ .|.+||+... +.+..+......+..+.++++++.++++.+. -.
T Consensus 327 i~~sp~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~---dg 401 (430)
T 2xyi_A 327 VQWSPHNETILASSGTDR--RLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSE---DN 401 (430)
T ss_dssp EEECSSCTTEEEEEETTS--CCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEET---TS
T ss_pred EEECCCCCCEEEEEeCCC--cEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEEC---CC
Confidence 9999854 5788877774 6888898642 1112222224557788899988855555443 25
Q ss_pred eEEEEECCC
Q 004766 420 IVYQCNLKT 428 (732)
Q Consensus 420 ~~y~~d~~~ 428 (732)
.+..+++..
T Consensus 402 ~i~iw~~~~ 410 (430)
T 2xyi_A 402 IMQVWQMAE 410 (430)
T ss_dssp EEEEEEECH
T ss_pred CEEEeEccc
Confidence 677777654
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.85 E-value=1.7e-06 Score=88.25 Aligned_cols=231 Identities=11% Similarity=0.069 Sum_probs=141.3
Q ss_pred EEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCc---eecc-cccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCC
Q 004766 133 ALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQI---VEAD-ALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDA 208 (732)
Q Consensus 133 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~---~~~~-~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~ 208 (732)
.+..+.|||||++|+.... + ..|++|++.... .+.. .........+.| +++.|+....+
T Consensus 61 ~v~~~~~~~~~~~l~~~~~-d----g~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d---------- 123 (313)
T 3odt_A 61 FLNSVCYDSEKELLLFGGK-D----TMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWD---------- 123 (313)
T ss_dssp CEEEEEEETTTTEEEEEET-T----SCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETT----------
T ss_pred cEEEEEECCCCCEEEEecC-C----CeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCC----------
Confidence 3678999999999987642 2 368889987643 1111 111112356777 67777766432
Q ss_pred CCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEec-CCcEEEEEEecCCcceEEEEEEeCCCCCCCccccc
Q 004766 209 GTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTE-DGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFK 287 (732)
Q Consensus 209 ~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~ 287 (732)
..|.+|+.+ .....+.. +......+.++| ++++++....++ .+.++|....
T Consensus 124 ---------~~i~~~d~~----~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~d~-----~i~i~d~~~~-------- 175 (313)
T 3odt_A 124 ---------KTAKVWKEG----SLVYNLQA--HNASVWDAKVVSFSENKFLTASADK-----TIKLWQNDKV-------- 175 (313)
T ss_dssp ---------SEEEEEETT----EEEEEEEC--CSSCEEEEEEEETTTTEEEEEETTS-----CEEEEETTEE--------
T ss_pred ---------CCEEEEcCC----cEEEeccc--CCCceeEEEEccCCCCEEEEEECCC-----CEEEEecCce--------
Confidence 357788722 12222322 233456788888 899887665433 3677773321
Q ss_pred ccCCCCCcEEeeecccce--EEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecCCEEEE
Q 004766 288 KRDGLLPFVKLIDGFDAQ--YEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIV 365 (732)
Q Consensus 288 ~~~~~~~~~~l~~~~~~~--~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~~l~~ 365 (732)
...+....... ...|+|++. ++..+. ...|..+|+.+++....+..+. ..+..+.+++++. ++
T Consensus 176 -------~~~~~~~~~~~i~~~~~~~~~~-~~~~~~----dg~i~i~d~~~~~~~~~~~~~~--~~i~~~~~~~~~~-l~ 240 (313)
T 3odt_A 176 -------IKTFSGIHNDVVRHLAVVDDGH-FISCSN----DGLIKLVDMHTGDVLRTYEGHE--SFVYCIKLLPNGD-IV 240 (313)
T ss_dssp -------EEEECSSCSSCEEEEEEEETTE-EEEEET----TSEEEEEETTTCCEEEEEECCS--SCEEEEEECTTSC-EE
T ss_pred -------EEEEeccCcccEEEEEEcCCCe-EEEccC----CCeEEEEECCchhhhhhhhcCC--ceEEEEEEecCCC-EE
Confidence 12222111111 224888876 444332 3478999998876444443343 5688899998664 55
Q ss_pred EEecCCeeEEEEEeCCCCceeeecccccceeeEeecccCCcEEEEEEecCCCCceEEEEECCCCC
Q 004766 366 SYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 430 (732)
Q Consensus 366 ~~~~~g~~~l~~~d~~~g~~~~~l~~~~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~~ 430 (732)
+...+ ..|++||+.+++....+..+...+..+.+++++. ++ +.++ -..++.||+.+++
T Consensus 241 ~~~~d--g~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~-~~~~---dg~i~iw~~~~~~ 298 (313)
T 3odt_A 241 SCGED--RTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-II-VGSS---DNLVRIFSQEKSR 298 (313)
T ss_dssp EEETT--SEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EE-EEET---TSCEEEEESCGGG
T ss_pred EEecC--CEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EE-EEeC---CCcEEEEeCCCCc
Confidence 55666 4799999988887677776666788888999987 33 3222 3578889987663
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.84 E-value=5.9e-07 Score=106.42 Aligned_cols=208 Identities=11% Similarity=0.012 Sum_probs=126.6
Q ss_pred EEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcc
Q 004766 133 ALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTET 212 (732)
Q Consensus 133 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~ 212 (732)
.+..++|||||++||.... ..+|+|||..+++.+........+..++|+| |+.|+....
T Consensus 19 ~V~~lafspdg~~lAsgs~-----Dg~I~lw~~~~~~~~~~~~~~~~V~~l~fsp-g~~L~S~s~--------------- 77 (902)
T 2oaj_A 19 KPIAAAFDFTQNLLAIATV-----TGEVHIYGQQQVEVVIKLEDRSAIKEMRFVK-GIYLVVINA--------------- 77 (902)
T ss_dssp CEEEEEEETTTTEEEEEET-----TSEEEEECSTTCEEEEECSSCCCEEEEEEET-TTEEEEEET---------------
T ss_pred CcEEEEECCCCCEEEEEeC-----CCEEEEEeCCCcEEEEEcCCCCCEEEEEEcC-CCEEEEEEC---------------
Confidence 3668999999999997642 2489999998877543222222357899999 886665543
Q ss_pred cCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCC
Q 004766 213 DSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGL 292 (732)
Q Consensus 213 ~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~ 292 (732)
...|.+|++.++.. +..+.. ...+..++|+|||++|+....++ .|.++|+.++... .+.. .
T Consensus 78 ----D~~v~lWd~~~~~~--~~~~~~---~~~V~~v~~sp~g~~l~sgs~dg-----~V~lwd~~~~~~~--~~~i---~ 138 (902)
T 2oaj_A 78 ----KDTVYVLSLYSQKV--LTTVFV---PGKITSIDTDASLDWMLIGLQNG-----SMIVYDIDRDQLS--SFKL---D 138 (902)
T ss_dssp ----TCEEEEEETTTCSE--EEEEEC---SSCEEEEECCTTCSEEEEEETTS-----CEEEEETTTTEEE--EEEE---C
T ss_pred ----cCeEEEEECCCCcE--EEEEcC---CCCEEEEEECCCCCEEEEEcCCC-----cEEEEECCCCccc--ccee---c
Confidence 24699999987532 222322 23467899999999998766443 3788898764210 0000 0
Q ss_pred CCc---EEeeeccc-ceEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccC----------------CCCCce
Q 004766 293 LPF---VKLIDGFD-AQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPE----------------AERDVL 352 (732)
Q Consensus 293 ~~~---~~l~~~~~-~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~----------------~~~~~l 352 (732)
..+ ..+..... .....|+|++..+++.... +..+ .+|+.++.....+..+ .....+
T Consensus 139 ~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~---dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V 214 (902)
T 2oaj_A 139 NLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYE---YVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKV 214 (902)
T ss_dssp CHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECS---SCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCE
T ss_pred cccccccccccCCCCeEEEEEccCCCCEEEEEeC---CCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCe
Confidence 000 00000001 1122588865444444433 3467 8999876533333322 001458
Q ss_pred eEEEEecCCEEEEEEecCCeeEEEEEeCCCCcee
Q 004766 353 ESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLL 386 (732)
Q Consensus 353 ~~~~~~~~~~l~~~~~~~g~~~l~~~d~~~g~~~ 386 (732)
..+.|++++.++++...|+ .|.+||+.+|+.+
T Consensus 215 ~~v~fspdg~~lasgs~Dg--~i~lWd~~~g~~~ 246 (902)
T 2oaj_A 215 IQSLYHPNSLHIITIHEDN--SLVFWDANSGHMI 246 (902)
T ss_dssp EEEEECTTSSEEEEEETTC--CEEEEETTTCCEE
T ss_pred EEEEEcCCCCEEEEEECCC--eEEEEECCCCcEE
Confidence 8899998777888888885 6899999888754
|
| >1dx4_A ACHE, acetylcholinesterase; hydrolase, serine esterase, synapse, membrane, nerve, muscle neurotransmitter degradation, glycoprotein; HET: NAG MAN BMA 760; 2.70A {Drosophila melanogaster} SCOP: c.69.1.1 PDB: 1qo9_A* 1qon_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=7.6e-09 Score=115.60 Aligned_cols=117 Identities=18% Similarity=0.145 Sum_probs=80.7
Q ss_pred CCCccEEEEEcCCCCc---cCCCCcChhHHHHHHhcCcEEEEEcccCC-CCCc---hhHHh-cccccCCccHHHHHHHHH
Q 004766 478 DGSHPCLLYGYGGFNI---SVTPSFSVSRTILMRHLGAVFCIANIRGG-GEYG---EEWHK-GGALAKKQNCFDDFISAS 549 (732)
Q Consensus 478 ~~~~P~vv~~hG~~~~---~~~~~~~~~~~~~l~~~G~~v~~~~~rG~-g~~g---~~~~~-~~~~~~~~~~~~D~~~~~ 549 (732)
+++.|+||++|||... ...+.|... .++++.|++|+.+|||-| -||. ..+.. ......+...+.|+++|+
T Consensus 138 ~~~~PV~v~iHGGg~~~g~~~~~~~~~~--~l~~~~~~vvv~~nYRlg~~Gfl~~~~~~~~~~~~~~~~n~gl~D~~~al 215 (585)
T 1dx4_A 138 TNGLPILIWIYGGGFMTGSATLDIYNAD--IMAAVGNVIVASFQYRVGAFGFLHLAPEMPSEFAEEAPGNVGLWDQALAI 215 (585)
T ss_dssp CSSEEEEEEECCSTTTCCCTTCGGGCCH--HHHHHHTCEEEEECCCCTHHHHCCCGGGSCGGGTTSSCSCHHHHHHHHHH
T ss_pred CCCCCEEEEECCCcccCCCCCCCCCCch--hhhccCCEEEEEecccccchhhcccccccccccCCCCCCcccHHHHHHHH
Confidence 4678999999998533 222334432 344447999999999932 1221 11110 011122334689999999
Q ss_pred HHHHHcC---CCCCCcEEEEecChhHHHHHHHHhh--CCCeeeEEEEcCCcc
Q 004766 550 EYLISAG---YTQSRKLCIEGGSNGGLLVGACINQ--RPDLFGCALAHVGVM 596 (732)
Q Consensus 550 ~~l~~~~---~~d~~~i~i~G~S~GG~l~~~~~~~--~p~~f~a~v~~~p~~ 596 (732)
+|+.++- -.||+||.|+|+|+||.+++.++.. ...+|+++|+.+|..
T Consensus 216 ~wv~~ni~~fggDp~~vti~G~SaGg~~v~~~~~~~~~~~lf~~ai~~Sg~~ 267 (585)
T 1dx4_A 216 RWLKDNAHAFGGNPEWMTLFGESAGSSSVNAQLMSPVTRGLVKRGMMQSGTM 267 (585)
T ss_dssp HHHHHSTGGGTEEEEEEEEEEETHHHHHHHHHHHCTTTTTSCCEEEEESCCT
T ss_pred HHHHHHHHHhCCCcceeEEeecchHHHHHHHHHhCCcccchhHhhhhhcccc
Confidence 9999872 3599999999999999999888875 236999999998864
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.83 E-value=1.2e-06 Score=91.00 Aligned_cols=244 Identities=11% Similarity=0.032 Sum_probs=131.2
Q ss_pred EEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCc--eec---ccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCC
Q 004766 133 ALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQI--VEA---DALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMD 207 (732)
Q Consensus 133 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~--~~~---~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~ 207 (732)
.+..+.|||+ +||-.. ...+|++||+.++. .+. ..........++|+||++.|+....+.
T Consensus 16 ~v~~~~~s~~--~las~~-----~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~-------- 80 (330)
T 2hes_X 16 KIWSFDFSQG--ILATGS-----TDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDS-------- 80 (330)
T ss_dssp CEEEEEEETT--EEEEEE-----SSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTS--------
T ss_pred ceeeeccCCC--EEEEEc-----CCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCC--------
Confidence 3567889998 555332 22479999998764 221 110222357899999999888765432
Q ss_pred CCCcccCCcccEEEEEECCCCCC---CCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcc
Q 004766 208 AGTETDSNLYHEFYYHFLGTKQS---EDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLE 284 (732)
Q Consensus 208 ~~~~~~~~~~~~v~~~~lgt~~~---~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~ 284 (732)
.|.+|++..... ....+.....+...+..++|||||++|+..+.++. +.++|+......
T Consensus 81 -----------~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~-----v~iwd~~~~~~~-- 142 (330)
T 2hes_X 81 -----------TVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKS-----VWIWETDESGEE-- 142 (330)
T ss_dssp -----------CEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSC-----EEEEECCTTCCC--
T ss_pred -----------cEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCE-----EEEEeccCCCCC--
Confidence 477787743211 11122222223345678999999999887664433 777887431100
Q ss_pred cccccCCCCCcEEeeecccce-EEEEEecCCeEEEEeCCCCCCceEEEEeCCCCC--CceEeccCCCCCceeEEEEecC-
Q 004766 285 GFKKRDGLLPFVKLIDGFDAQ-YEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPN--DWFEVIPEAERDVLESATAVNL- 360 (732)
Q Consensus 285 ~~~~~~~~~~~~~l~~~~~~~-~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~--~~~~l~~~~~~~~l~~~~~~~~- 360 (732)
......+....... ...|+|++..|+..+.+ ..|..+|+.++. ....+..+. ..+..+.++++
T Consensus 143 -------~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D----~~i~iW~~~~~~~~~~~~~~~h~--~~v~~~~~~~~~ 209 (330)
T 2hes_X 143 -------YECISVLQEHSQDVKHVIWHPSEALLASSSYD----DTVRIWKDYDDDWECVAVLNGHE--GTVWSSDFDKTE 209 (330)
T ss_dssp -------CEEEEEECCCSSCEEEEEECSSSSEEEEEETT----SCEEEEEEETTEEEEEEEECCCS--SCEEEEEECCSS
T ss_pred -------eEEEEEeccCCCceEEEEECCCCCEEEEEcCC----CeEEEEECCCCCeeEEEEccCCC--CcEEEEEecCCC
Confidence 01111222211111 22589998876654432 245555654432 223343443 56778888875
Q ss_pred -CEEEEEEecCCeeEEEEEeCCCCc--------eeeeccc-ccceeeEeecccCCcEEEEEEecCCCCceEEEEECCCC
Q 004766 361 -NQMIVSYLSDVKYVLQIRDLKNGS--------LLHQLPI-EIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTE 429 (732)
Q Consensus 361 -~~l~~~~~~~g~~~l~~~d~~~g~--------~~~~l~~-~~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~ 429 (732)
...+++...++ .|.+|++.++. ....+.. +...|..+.+++++ ++++.+. -..+..+|..++
T Consensus 210 ~~~~l~s~s~D~--~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~--~l~s~~~---dg~v~iw~~~~~ 281 (330)
T 2hes_X 210 GVFRLCSGSDDS--TVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG--LIASVGA---DGVLAVYEEVDG 281 (330)
T ss_dssp SSCEEEEEETTS--CEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS--CEEEEET---TSCEEEEEEETT
T ss_pred CeeEEEEEeCCC--eEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC--EEEEEeC---CCEEEEEEcCCC
Confidence 45677777775 57777765331 1122222 34556677777544 3333332 245777776655
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=98.82 E-value=1.9e-06 Score=93.93 Aligned_cols=244 Identities=12% Similarity=0.100 Sum_probs=144.4
Q ss_pred ECCCCcEEEEEEeccCCceEEEEEEECCCCceecccc-cceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCCcc
Q 004766 139 VSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADAL-SWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLY 217 (732)
Q Consensus 139 ~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~-~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~~~ 217 (732)
+++++++|+-.. ...+|++||+.+++.+.... .......++|+||+ .|+.... .
T Consensus 128 ~~~~~~~l~sgs-----~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~-------------------d 182 (464)
T 3v7d_B 128 LQFEDNYVITGA-----DDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGST-------------------D 182 (464)
T ss_dssp EEEETTEEEEEE-----TTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEET-------------------T
T ss_pred EEECCCEEEEEc-----CCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeC-------------------C
Confidence 444677776553 22479999999998553221 22235789999988 5554432 2
Q ss_pred cEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEe--cCCcEEEEEEecCCcceEEEEEEeCCCCCCCccccccc------
Q 004766 218 HEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVT--EDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKR------ 289 (732)
Q Consensus 218 ~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~S--pDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~------ 289 (732)
..|.+|++.++.. +..+.. +...+..+.++ +++++++..+.++ .+.++|+.++..........
T Consensus 183 g~i~vwd~~~~~~--~~~~~~--h~~~v~~l~~~~~~~~~~l~s~s~d~-----~i~vwd~~~~~~~~~~~~~~~~~~~~ 253 (464)
T 3v7d_B 183 RTVRVWDIKKGCC--THVFEG--HNSTVRCLDIVEYKNIKYIVTGSRDN-----TLHVWKLPKESSVPDHGEEHDYPLVF 253 (464)
T ss_dssp SCEEEEETTTTEE--EEEECC--CSSCEEEEEEEESSSCEEEEEEETTS-----CEEEEECCCCCCC------CCSSEEE
T ss_pred CCEEEEECCCCcE--EEEECC--CCCccEEEEEecCCCCCEEEEEcCCC-----cEEEeeCCCCcccccccccCCcceEe
Confidence 3588999876532 223332 23344566666 6888887665433 37777877642110000000
Q ss_pred ---CCCCCcEEeeecccceEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecCCEEEEE
Q 004766 290 ---DGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVS 366 (732)
Q Consensus 290 ---~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~~l~~~ 366 (732)
...........+.......++++++.++..+.. ..|..+|+.++.....+..+. ..+..+.+++++..+++
T Consensus 254 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d----~~i~vwd~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~s 327 (464)
T 3v7d_B 254 HTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYD----NTLIVWDVAQMKCLYILSGHT--DRIYSTIYDHERKRCIS 327 (464)
T ss_dssp SCGGGCTTEEEEECCCSSCEEEEEEETTEEEEEETT----SCEEEEETTTTEEEEEECCCS--SCEEEEEEETTTTEEEE
T ss_pred eccCCCeEEEEEccCccceEEEEcCCCCEEEEEeCC----CeEEEEECCCCcEEEEecCCC--CCEEEEEEcCCCCEEEE
Confidence 000000111222223344567888877765543 368889998776444444443 56888999886667777
Q ss_pred EecCCeeEEEEEeCCCCceeeecccccceeeEeecccCCcEEEEEEecCCCCceEEEEECCCCC
Q 004766 367 YLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 430 (732)
Q Consensus 367 ~~~~g~~~l~~~d~~~g~~~~~l~~~~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~~ 430 (732)
...++ .|++||+.+|+.+..+..+...+..+.++ ++.+ ++.+. -..+..||+.+++
T Consensus 328 g~~dg--~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l-~s~s~---dg~v~vwd~~~~~ 383 (464)
T 3v7d_B 328 ASMDT--TIRIWDLENGELMYTLQGHTALVGLLRLS--DKFL-VSAAA---DGSIRGWDANDYS 383 (464)
T ss_dssp EETTS--CEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEE-EEEET---TSEEEEEETTTCC
T ss_pred EeCCC--cEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEE-EEEeC---CCcEEEEECCCCc
Confidence 77774 68999998888767776566667667665 4443 34333 3578999998774
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.81 E-value=4.4e-06 Score=85.51 Aligned_cols=254 Identities=12% Similarity=0.040 Sum_probs=143.0
Q ss_pred eEEeCCCCcCCCCCEEEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceeccc---ccceeeeeEEEEeCCcEEEE
Q 004766 118 KVLLDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADA---LSWFKFSSIAWTHDSKGFFY 194 (732)
Q Consensus 118 ~~l~D~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~---~~~~~~~~~~WspDg~~l~y 194 (732)
+.+||.-.+..+ +.++-+.|||++ .||.+.+ .+|+|||+++|+.+... ........++|+|||+.|+.
T Consensus 14 ~rvldap~~~~d--~y~~~l~WS~~~-~lAvg~D------~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~s 84 (318)
T 4ggc_A 14 DRILDAPEIRND--YYLNLVDWSSGN-VLAVALD------NSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAV 84 (318)
T ss_dssp SEEEECTTCCCC--TTCBCEEECTTS-EEEEEET------TEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEE
T ss_pred CEEeeCCCCccc--ccceEEEECCCC-EEEEEeC------CEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEE
Confidence 445675444322 113457899997 7776642 37999999999855321 12222478999999999887
Q ss_pred EEecCCCCCCCCCCCCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEE
Q 004766 195 SRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYC 274 (732)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~ 274 (732)
...+ ..|.+|++.+++. +..+.. +... ...++++++.++..... ..+.++
T Consensus 85 gs~D-------------------g~v~iw~~~~~~~--~~~~~~--h~~~--~~~~~~~~~~l~s~~~~-----~~~~~~ 134 (318)
T 4ggc_A 85 GTSS-------------------AEVQLWDVQQQKR--LRNMTS--HSAR--VGSLSWNSYILSSGSRS-----GHIHHH 134 (318)
T ss_dssp EETT-------------------SEEEEEETTTTEE--EEEEEC--CSSC--EEEEEEETTEEEEEETT-----SEEEEE
T ss_pred EECC-------------------CcEEEeecCCcee--EEEecC--ccce--EEEeecCCCEEEEEecC-----CceEee
Confidence 6543 3688999877532 122222 2222 23567788877654432 234555
Q ss_pred eCCCCCCCcccccccCCCCCcEEeeecccce-EEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCC---ceEeccCCCCC
Q 004766 275 DLSALPEGLEGFKKRDGLLPFVKLIDGFDAQ-YEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPND---WFEVIPEAERD 350 (732)
Q Consensus 275 d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~---~~~l~~~~~~~ 350 (732)
+..... .....+....... ...+.++|+.|+..+. ...|..+|+.+++. ....... ...
T Consensus 135 ~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~----d~~i~iwd~~~~~~~~~~~~~~~~-~~~ 197 (318)
T 4ggc_A 135 DVRVAE------------HHVATLSGHSQEVCGLRWAPDGRHLASGGN----DNLVNVWPSAPGEGGWVPLQTFTQ-HQG 197 (318)
T ss_dssp ETTSSS------------CEEEEEECCSSCEEEEEECTTSSEEEEEET----TSCEEEEESSCBTTBSCCSEEECC-CCS
T ss_pred ecCCCc------------eeEEEEcCccCceEEEEEcCCCCEEEEEec----CcceeEEECCCCcccccceeeecc-cCC
Confidence 554421 1122222222222 2246778877665443 23577888876541 1111111 124
Q ss_pred ceeEEEEecC-CEEEEEEecCCeeEEEEEeCCCCceeeecccccceeeEeecccCCcEEEEEEecCCCCceEEEEECCCC
Q 004766 351 VLESATAVNL-NQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTE 429 (732)
Q Consensus 351 ~l~~~~~~~~-~~l~~~~~~~g~~~l~~~d~~~g~~~~~l~~~~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~ 429 (732)
.+..+.+.++ ..++..........|.+|+...+....... ....+..+.++++++.+++... ..-..++.+|+.++
T Consensus 198 ~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~sg--~~d~~i~iwd~~~~ 274 (318)
T 4ggc_A 198 AVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-AHSQVCSILWSPHYKELISGHG--FAQNQLVIWKYPTM 274 (318)
T ss_dssp CEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEEETTTTEEEEEEC--TTTCCEEEEETTTC
T ss_pred ceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccc-ceeeeeeeeecccccceEEEEE--cCCCEEEEEECCCC
Confidence 5666777653 445555444444678999987665432222 3344556667788887665432 23467899999887
Q ss_pred C
Q 004766 430 T 430 (732)
Q Consensus 430 ~ 430 (732)
+
T Consensus 275 ~ 275 (318)
T 4ggc_A 275 A 275 (318)
T ss_dssp C
T ss_pred c
Confidence 5
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=98.79 E-value=1.2e-07 Score=97.88 Aligned_cols=241 Identities=12% Similarity=-0.006 Sum_probs=132.2
Q ss_pred CEEEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCce--ec-ccccceeeeeEEEEeC--CcEEEEEEecCCCCCCC
Q 004766 131 TAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIV--EA-DALSWFKFSSIAWTHD--SKGFFYSRYPAPKEGKD 205 (732)
Q Consensus 131 ~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~--~~-~~~~~~~~~~~~WspD--g~~l~y~~~~~~~~~~~ 205 (732)
.-.+..++|||||++||-.. ...+|+|||+.++.. +. .......+..++|+|+ ++.|+-.+.+
T Consensus 13 ~~~V~~v~~s~~g~~lasgs-----~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D------- 80 (316)
T 3bg1_A 13 EDMIHDAQMDYYGTRLATCS-----SDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYD------- 80 (316)
T ss_dssp -CCEEEEEECGGGCEEEEEE-----TTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETT-------
T ss_pred cCeEEEeeEcCCCCEEEEEe-----CCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECC-------
Confidence 34477899999999988553 224899999988752 11 1111223478999864 7777766533
Q ss_pred CCCCCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecC--CcEEEEEEecCCcceEEEEEEeCCCCCCCc
Q 004766 206 MDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTED--GQYLVMCIEENCDPVNKVYYCDLSALPEGL 283 (732)
Q Consensus 206 ~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpD--g~~l~~~~~~~~~~~~~l~~~d~~~~~~~~ 283 (732)
..|.+|++.++.......+. .+...+..++|+|+ |.+|+..+.++ .+.++++.++..
T Consensus 81 ------------~~v~iWd~~~~~~~~~~~~~--~h~~~V~~v~~~p~~~g~~lasgs~D~-----~i~lwd~~~~~~-- 139 (316)
T 3bg1_A 81 ------------RKVIIWREENGTWEKSHEHA--GHDSSVNSVCWAPHDYGLILACGSSDG-----AISLLTYTGEGQ-- 139 (316)
T ss_dssp ------------SCEEEECCSSSCCCEEEEEC--CCSSCCCEEEECCTTTCSCEEEECSSS-----CEEEEEECSSSC--
T ss_pred ------------CEEEEEECCCCcceEEEEcc--CCCCceEEEEECCCCCCcEEEEEcCCC-----CEEEEecCCCCC--
Confidence 35888888765322222222 22334567899998 77776554332 266667654210
Q ss_pred ccccccCCCCCcEE--eeeccc--ceEEEEEecC-----------------CeEEEEeCCCCCCceEEEEeCCCCCCce-
Q 004766 284 EGFKKRDGLLPFVK--LIDGFD--AQYEVIANDD-----------------TVFTFLTNKDAPKYKIIRVDLKEPNDWF- 341 (732)
Q Consensus 284 ~~~~~~~~~~~~~~--l~~~~~--~~~~~~s~dg-----------------~~l~~~s~~~~~~~~l~~~d~~~~~~~~- 341 (732)
+.. ...... .....|+|++ +.|+ .... ...|..+|+.+...+.
T Consensus 140 -----------~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-sgs~---D~~v~lWd~~~~~~~~~ 204 (316)
T 3bg1_A 140 -----------WEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFA-SGGC---DNLIKLWKEEEDGQWKE 204 (316)
T ss_dssp -----------EEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEE-CCBT---TSBCCEEEECTTSCEEE
T ss_pred -----------cceeeeeccccCCcceEEEccccCCccccccccccCccccceEE-EecC---CCeEEEEEeCCCCccce
Confidence 100 000000 0111355542 2332 2222 2345556665432222
Q ss_pred --EeccCCCCCceeEEEEecCC----EEEEEEecCCeeEEEEEeCCCCc---e-eeecccccceeeEeecccCCcEEEEE
Q 004766 342 --EVIPEAERDVLESATAVNLN----QMIVSYLSDVKYVLQIRDLKNGS---L-LHQLPIEIGSVNAISARREDSVVFIS 411 (732)
Q Consensus 342 --~l~~~~~~~~l~~~~~~~~~----~l~~~~~~~g~~~l~~~d~~~g~---~-~~~l~~~~g~v~~~~~s~d~~~l~~~ 411 (732)
.+..+. ..+..+.+++++ .++++...++ .|.+|++.++. . ...+....+.+..++++|+++.|+..
T Consensus 205 ~~~l~~h~--~~V~~v~~sp~~~~~~~~las~s~D~--~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~ 280 (316)
T 3bg1_A 205 EQKLEAHS--DWVRDVAWAPSIGLPTSTIASCSQDG--RVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVS 280 (316)
T ss_dssp EECCBCCS--SCEEEEECCCCSSCSCCEEEEEETTC--EEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEE
T ss_pred eeecccCC--CceEEEEecCCCCCCCceEEEEcCCC--eEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEE
Confidence 222332 568889988753 6778888884 68889886521 1 12232234567788899999866533
Q ss_pred EecCCCCceEEEEECC
Q 004766 412 FTSFLIPGIVYQCNLK 427 (732)
Q Consensus 412 ~ss~~~p~~~y~~d~~ 427 (732)
+. . ..+..|+..
T Consensus 281 -~~-D--~~v~lw~~~ 292 (316)
T 3bg1_A 281 -GG-D--NKVTLWKES 292 (316)
T ss_dssp -ES-S--SCEEEEEEC
T ss_pred -cC-C--CeEEEEEEC
Confidence 22 1 345555543
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=98.79 E-value=2.4e-06 Score=89.72 Aligned_cols=233 Identities=8% Similarity=0.026 Sum_probs=144.9
Q ss_pred EEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcc
Q 004766 133 ALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTET 212 (732)
Q Consensus 133 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~ 212 (732)
.+..++|||||++||...+ + .++|||+++++.+...... ....+.|+++++.++++..
T Consensus 21 ~V~~v~fs~dg~~la~g~~----~--~~~iw~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--------------- 78 (355)
T 3vu4_A 21 PVTDYEFNQDQSCLILSTL----K--SFEIYNVHPVAHIMSQEMR-HLSKVRMLHRTNYVAFVTG--------------- 78 (355)
T ss_dssp CCCEEEECTTSSEEEEECS----S--EEEEEEETTEEEEEEEECS-CCCEEEECTTSSEEEEECS---------------
T ss_pred ceEEEEECCCCCEEEEEcC----C--EEEEEecCCcceeeeeecC-CeEEEEEcCCCCEEEEEEC---------------
Confidence 3568899999999986532 1 3679999887644221111 2366889999998877632
Q ss_pred cCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCC
Q 004766 213 DSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGL 292 (732)
Q Consensus 213 ~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~ 292 (732)
....|.+|++.++.. +..++. ...+..+.+++++. ++.. + ..++++|+.++...
T Consensus 79 ---~d~~v~iWd~~~~~~--~~~~~~---~~~v~~v~~~~~~~--~~~~-~-----~~i~i~d~~~~~~~---------- 132 (355)
T 3vu4_A 79 ---VKEVVHIWDDVKKQD--VSRIKV---DAPVKDLFLSREFI--VVSY-G-----DVISVFKFGNPWKR---------- 132 (355)
T ss_dssp ---STTEEEEEETTTTEE--EEEEEC---SSCEEEEEECSSEE--EEEE-T-----TEEEEEESSTTCCB----------
T ss_pred ---CccEEEEEECCCCcE--EEEEEC---CCceEEEEEcCCEE--EEEE-c-----CEEEEEECCCCcee----------
Confidence 224799999876532 122222 22355778887753 3322 2 34888898874111
Q ss_pred CCcEEeeecccceEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCC----------------CceEeccCCCCCceeEEE
Q 004766 293 LPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPN----------------DWFEVIPEAERDVLESAT 356 (732)
Q Consensus 293 ~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~----------------~~~~l~~~~~~~~l~~~~ 356 (732)
...+.. ......+++ ..+++.+.. ..+.|..+|+.++. ....+..+. ..+..+.
T Consensus 133 --~~~~~~--~~~~~~~s~--~~la~~sg~--~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~--~~v~~~~ 202 (355)
T 3vu4_A 133 --ITDDIR--FGGVCEFSN--GLLVYSNEF--NLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHT--NPIKMVR 202 (355)
T ss_dssp --SSCCEE--EEEEEEEET--TEEEEEESS--CTTCEEEEECCC------------------CCEEECCCS--SCEEEEE
T ss_pred --eEEecc--CCceEEEEc--cEEEEeCCC--cCcEEEEEECCCCCccccccccccccccCcccEEEEccC--CceEEEE
Confidence 111111 112334565 566655232 23467888887643 024444443 5688999
Q ss_pred EecCCEEEEEEecCCeeE-EEEEeCCCCceeeeccc--ccceeeEeecccCCcEEEEEEecCCCCceEEEEECCCC
Q 004766 357 AVNLNQMIVSYLSDVKYV-LQIRDLKNGSLLHQLPI--EIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTE 429 (732)
Q Consensus 357 ~~~~~~l~~~~~~~g~~~-l~~~d~~~g~~~~~l~~--~~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~ 429 (732)
+++++.++++...++ . |.+||+.+|+.+..+.. ..+.+..+.++|+++.++. .+. -..+..+|+..+
T Consensus 203 ~s~~g~~l~s~s~d~--~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s-~s~---d~~v~iw~~~~~ 272 (355)
T 3vu4_A 203 LNRKSDMVATCSQDG--TIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAV-VSD---KWTLHVFEIFND 272 (355)
T ss_dssp ECTTSSEEEEEETTC--SEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEE-EET---TCEEEEEESSCC
T ss_pred ECCCCCEEEEEeCCC--CEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEE-EEC---CCEEEEEEccCC
Confidence 998778888888884 5 88999998887777762 4667888999999986553 332 257888888654
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.77 E-value=5.3e-07 Score=97.55 Aligned_cols=205 Identities=10% Similarity=0.016 Sum_probs=119.0
Q ss_pred EEeEEECCCC--cEEEEEEeccCCceEEEEEEECCCCceec---------------------------------------
Q 004766 134 LIKVSVSEDA--KYLAYALSYSGSDWATIKLMRIEDQIVEA--------------------------------------- 172 (732)
Q Consensus 134 ~~~~~~SPDG--~~la~~~~~~G~e~~~i~v~dl~~g~~~~--------------------------------------- 172 (732)
+..+.|+|++ .+|+.+. .+ .+|++||+.++....
T Consensus 96 V~~l~~~~~~~~~~l~s~s-~d----~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (447)
T 3dw8_B 96 INKIRWLPQKNAAQFLLST-ND----KTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRR 170 (447)
T ss_dssp CCEEEECCCCSSSEEEEEE-CS----SCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEE
T ss_pred eEEEEEcCCCCcceEEEeC-CC----CeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceE
Confidence 6689999998 6776553 22 378999987644210
Q ss_pred --ccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCCcccEEEEEECCCCCCCCeEEE-----ecCCCCeeE
Q 004766 173 --DALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCW-----KDPEHPKYI 245 (732)
Q Consensus 173 --~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~-----~~~~~~~~~ 245 (732)
..........++|+|||+.|+.. .+ ..|.+|++.+.... ..++ ....+...+
T Consensus 171 ~~~~~h~~~v~~~~~~~~~~~l~s~-~d-------------------~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~v 229 (447)
T 3dw8_B 171 IFANAHTYHINSISINSDYETYLSA-DD-------------------LRINLWHLEITDRS-FNIVDIKPANMEELTEVI 229 (447)
T ss_dssp EECSCCSSCCCEEEECTTSSEEEEE-CS-------------------SEEEEEETTEEEEE-EEEEECCCSSGGGCCCCE
T ss_pred EeccCCCcceEEEEEcCCCCEEEEe-CC-------------------CeEEEEECCCCCce-eeeeecccccccccCcce
Confidence 00111124689999999988764 32 36888888743211 1111 111223456
Q ss_pred EEeEEecCC-cEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCCCCcEEeeeccc------------c-eEEEEEe
Q 004766 246 FSGHVTEDG-QYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFD------------A-QYEVIAN 311 (732)
Q Consensus 246 ~~~~~SpDg-~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~------------~-~~~~~s~ 311 (732)
..++|+|+| +.|+..+.++ .|.++|+.++... ......+..... . ....|+|
T Consensus 230 ~~~~~~p~~~~~l~s~~~dg-----~i~iwd~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 295 (447)
T 3dw8_B 230 TAAEFHPNSCNTFVYSSSKG-----TIRLCDMRASALC---------DRHSKLFEEPEDPSNRSFFSEIISSISDVKFSH 295 (447)
T ss_dssp EEEEECSSCTTEEEEEETTS-----CEEEEETTTCSSS---------CTTCEEECCC-----CCHHHHHTTCEEEEEECT
T ss_pred EEEEECCCCCcEEEEEeCCC-----eEEEEECcCCccc---------cceeeEeccCCCccccccccccCceEEEEEECC
Confidence 789999999 7776665433 3888898774310 000122222111 1 1225899
Q ss_pred cCCeEEEEeCCCCCCceEEEEeCCC-CCCceEeccCCCCC----------c---eeEEEEecCCEEEEEEecCCeeEEEE
Q 004766 312 DDTVFTFLTNKDAPKYKIIRVDLKE-PNDWFEVIPEAERD----------V---LESATAVNLNQMIVSYLSDVKYVLQI 377 (732)
Q Consensus 312 dg~~l~~~s~~~~~~~~l~~~d~~~-~~~~~~l~~~~~~~----------~---l~~~~~~~~~~l~~~~~~~g~~~l~~ 377 (732)
+|+.|+..+. ..|..+|+.+ +.....+..+..-. . +..+.|++++..+++...++ .|++
T Consensus 296 ~g~~l~~~~~-----~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg--~v~i 368 (447)
T 3dw8_B 296 SGRYMMTRDY-----LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNN--FFRM 368 (447)
T ss_dssp TSSEEEEEES-----SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTT--EEEE
T ss_pred CCCEEEEeeC-----CeEEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCC--EEEE
Confidence 9987775433 4688889876 43233333332100 0 12378888766677777774 7899
Q ss_pred EeCCCCce
Q 004766 378 RDLKNGSL 385 (732)
Q Consensus 378 ~d~~~g~~ 385 (732)
||+.+++.
T Consensus 369 wd~~~~~~ 376 (447)
T 3dw8_B 369 FDRNTKRD 376 (447)
T ss_dssp EETTTCCE
T ss_pred EEcCCCcc
Confidence 99987765
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=98.77 E-value=2.6e-06 Score=90.61 Aligned_cols=264 Identities=9% Similarity=0.003 Sum_probs=140.8
Q ss_pred ECCCCcEEEEEEeccCCc-eEEEEEEECCCCceecccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCCcc
Q 004766 139 VSEDAKYLAYALSYSGSD-WATIKLMRIEDQIVEADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLY 217 (732)
Q Consensus 139 ~SPDG~~la~~~~~~G~e-~~~i~v~dl~~g~~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~~~ 217 (732)
..||++++ |+.+.+... ...|.++|+++++.+.....+... ++++||||++||.+...... .......
T Consensus 80 p~~~~~~v-yV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P-gia~SpDgk~lyVan~~~~~---------~~~G~~~ 148 (426)
T 3c75_H 80 PAPDARRV-YIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP-HPVAAEDGSFFAQASTVFER---------IARGKRT 148 (426)
T ss_dssp CCCCTTEE-EEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC-EEEECTTSSCEEEEEEEEEE---------TTEEEEE
T ss_pred CCCCCCEE-EEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC-ceEECCCCCEEEEEeccccc---------cccCCCC
Confidence 35788874 665543211 168999999999976433223334 89999999999887531000 0000123
Q ss_pred cEEEEEECCCCCCCCeEEEecCCC---CeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCCCC
Q 004766 218 HEFYYHFLGTKQSEDILCWKDPEH---PKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLP 294 (732)
Q Consensus 218 ~~v~~~~lgt~~~~~~~v~~~~~~---~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~ 294 (732)
..|..+|..+......+....... ...-..+.+||||++|++..... .+.|.++|+++.+. ...+.. +..
T Consensus 149 ~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~---~~~VsVID~~t~kv-v~~I~v---~g~ 221 (426)
T 3c75_H 149 DYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSP---APAVGVVDLEGKTF-DRMLDV---PDC 221 (426)
T ss_dssp EEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSS---SCEEEEEETTTTEE-EEEEEC---CSE
T ss_pred CEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCC---CCeEEEEECCCCeE-EEEEEc---CCc
Confidence 468888877754322222210000 00112578999999997764321 35688999887421 000100 000
Q ss_pred cEEeeecccceEEE-------------------------------------EEecCCeEEEEeCCCCCCceEEEEeCCCC
Q 004766 295 FVKLIDGFDAQYEV-------------------------------------IANDDTVFTFLTNKDAPKYKIIRVDLKEP 337 (732)
Q Consensus 295 ~~~l~~~~~~~~~~-------------------------------------~s~dg~~l~~~s~~~~~~~~l~~~d~~~~ 337 (732)
..+.......+.. ++++++++++.+. ..+|+.+|+.+.
T Consensus 222 -~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~----~g~V~ViD~~~~ 296 (426)
T 3c75_H 222 -YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTY----TGKIFQADLTAE 296 (426)
T ss_dssp -EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBT----TSEEEEEEECSS
T ss_pred -eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeC----CCcEEEEeccCC
Confidence 0000000001111 2444455554432 125777777554
Q ss_pred CCceEeccC------CC---C---CceeEEEEecC-CEEEEEEecC-------CeeEEEEEeCCCCceeeecccccceee
Q 004766 338 NDWFEVIPE------AE---R---DVLESATAVNL-NQMIVSYLSD-------VKYVLQIRDLKNGSLLHQLPIEIGSVN 397 (732)
Q Consensus 338 ~~~~~l~~~------~~---~---~~l~~~~~~~~-~~l~~~~~~~-------g~~~l~~~d~~~g~~~~~l~~~~g~v~ 397 (732)
. ..++.. .. . .....+.++++ +++|+..... +...|.++|+++++.+.+|..+.. ..
T Consensus 297 ~--~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~~-P~ 373 (426)
T 3c75_H 297 G--ATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGHE-ID 373 (426)
T ss_dssp C--EEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEE-EC
T ss_pred c--eEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCCC-cC
Confidence 3 111110 00 0 00112566654 6777765421 246899999999988888876532 44
Q ss_pred EeecccCCcEEEEEEecCCCCceEEEEECCCCC
Q 004766 398 AISARREDSVVFISFTSFLIPGIVYQCNLKTET 430 (732)
Q Consensus 398 ~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~~ 430 (732)
.+.+++|++.++|+... ....+..+|+.+++
T Consensus 374 gia~spDg~~~lyv~n~--~s~~VsVID~~t~k 404 (426)
T 3c75_H 374 SINVSQDAEPLLYALSA--GTQTLHIYDAATGE 404 (426)
T ss_dssp EEEECCSSSCEEEEEET--TTTEEEEEETTTCC
T ss_pred eEEEccCCCEEEEEEcC--CCCeEEEEECCCCC
Confidence 67889999834444332 24689999999885
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=98.76 E-value=1.2e-06 Score=89.70 Aligned_cols=239 Identities=11% Similarity=-0.007 Sum_probs=135.1
Q ss_pred EEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCccc
Q 004766 134 LIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETD 213 (732)
Q Consensus 134 ~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~ 213 (732)
..++.|+|||+.|.|+-..++ .|+.++. +|+............+++|++||+ |+.+..
T Consensus 47 ~egp~~~~~g~~l~~~d~~~~----~i~~~~~-~g~~~~~~~~~~~~~gl~~d~dG~-l~v~~~---------------- 104 (305)
T 3dr2_A 47 SEGPAWWEAQRTLVWSDLVGR----RVLGWRE-DGTVDVLLDATAFTNGNAVDAQQR-LVHCEH---------------- 104 (305)
T ss_dssp EEEEEEEGGGTEEEEEETTTT----EEEEEET-TSCEEEEEESCSCEEEEEECTTSC-EEEEET----------------
T ss_pred ccCCeEeCCCCEEEEEECCCC----EEEEEeC-CCCEEEEeCCCCccceeeECCCCC-EEEEEC----------------
Confidence 358999999998888743322 6888898 454322111111246899999998 444421
Q ss_pred CCcccEEEEEECCCCCCCCeEEEecCCCC--eeEEEeEEecCCcEEEEEEec-CC------------cceEEEEEEeCCC
Q 004766 214 SNLYHEFYYHFLGTKQSEDILCWKDPEHP--KYIFSGHVTEDGQYLVMCIEE-NC------------DPVNKVYYCDLSA 278 (732)
Q Consensus 214 ~~~~~~v~~~~lgt~~~~~~~v~~~~~~~--~~~~~~~~SpDg~~l~~~~~~-~~------------~~~~~l~~~d~~~ 278 (732)
....|++++.. +.. ..+....... .....+.++|||+.. ++... +. .....||.++.++
T Consensus 105 --~~~~v~~~~~~-g~~--~~~~~~~~~~~~~~~~~i~~d~dG~l~-~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~ 178 (305)
T 3dr2_A 105 --GRRAITRSDAD-GQA--HLLVGRYAGKRLNSPNDLIVARDGAIW-FTDPPFGLRKPSQGCPADPELAHHSVYRLPPDG 178 (305)
T ss_dssp --TTTEEEEECTT-SCE--EEEECEETTEECSCCCCEEECTTSCEE-EECCSGGGSCGGGSCCCCCSSSCEEEEEECSSS
T ss_pred --CCCEEEEECCC-CCE--EEEEeccCCCccCCCCCEEECCCCCEE-EeCcCCCccccccccccccccCCCeEEEEcCCC
Confidence 22357777764 221 1222111110 012357899999844 32100 00 1136799999866
Q ss_pred CCCCcccccccCCCCCcEEeeecccc-eEEEEEecCCeEEEEeCCC--CCCceEEEEeCCCCC-CceEeccCCCCCceeE
Q 004766 279 LPEGLEGFKKRDGLLPFVKLIDGFDA-QYEVIANDDTVFTFLTNKD--APKYKIIRVDLKEPN-DWFEVIPEAERDVLES 354 (732)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~s~dg~~l~~~s~~~--~~~~~l~~~d~~~~~-~~~~l~~~~~~~~l~~ 354 (732)
+. +..+. +... .-..|+|||+.||+..... ....+|+++++++.. .-..++.........+
T Consensus 179 g~--------------~~~~~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdg 243 (305)
T 3dr2_A 179 SP--------------LQRMA-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDG 243 (305)
T ss_dssp CC--------------CEEEE-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCS
T ss_pred Cc--------------EEEEe-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCe
Confidence 43 22332 2221 1235899999888765431 112578888876542 0011221111223456
Q ss_pred EEEecCCEEEEEEecCCeeEEEEEeCCCCceeeecccccceeeEeecccCCcEEEEEEecCCCCceEEEEEC
Q 004766 355 ATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNL 426 (732)
Q Consensus 355 ~~~~~~~~l~~~~~~~g~~~l~~~d~~~g~~~~~l~~~~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~ 426 (732)
+.+.+++.|++.. .+ .|++++.+ |+.+..+..+.+ +..+.++++++.|+++.+. .+|++++
T Consensus 244 i~~d~~G~lwv~~-~~---gv~~~~~~-g~~~~~~~~~~~-~~~~~f~~d~~~L~it~~~-----~l~~~~~ 304 (305)
T 3dr2_A 244 FCVDRGGWLWSSS-GT---GVCVFDSD-GQLLGHIPTPGT-ASNCTFDQAQQRLFITGGP-----CLWMLPL 304 (305)
T ss_dssp EEECTTSCEEECC-SS---EEEEECTT-SCEEEEEECSSC-CCEEEECTTSCEEEEEETT-----EEEEEEC
T ss_pred EEECCCCCEEEec-CC---cEEEECCC-CCEEEEEECCCc-eeEEEEeCCCCEEEEEcCC-----eEEEEEC
Confidence 7777766776654 22 49999985 777677776653 5566667888888876543 6887764
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=98.76 E-value=4e-06 Score=88.47 Aligned_cols=77 Identities=10% Similarity=0.043 Sum_probs=51.3
Q ss_pred EEEecCCeEEEEeCCCC------CCceEEEEeCCCCCCceEeccCCCCCceeEEEEecCCE-EEEEEecCCeeEEEEEeC
Q 004766 308 VIANDDTVFTFLTNKDA------PKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQ-MIVSYLSDVKYVLQIRDL 380 (732)
Q Consensus 308 ~~s~dg~~l~~~s~~~~------~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~~-l~~~~~~~g~~~l~~~d~ 380 (732)
.+++||+++|+..+... ....|+.+|+++.+....+ +-. ....++.+++|++ +++.... +...|.++|.
T Consensus 273 ~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i-~~g--~~p~~i~~s~Dg~~~l~v~~~-~~~~V~ViD~ 348 (373)
T 2mad_H 273 AYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQI-SLG--HDVDAISVAQDGGPDLYALSA-GTEVLHIYDA 348 (373)
T ss_pred EECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEE-ECC--CCcCeEEECCCCCeEEEEEcC-CCCeEEEEEC
Confidence 47889999998764321 2357999999987633333 322 2356788888655 5555442 2358999999
Q ss_pred CCCceeee
Q 004766 381 KNGSLLHQ 388 (732)
Q Consensus 381 ~~g~~~~~ 388 (732)
++++.++.
T Consensus 349 ~t~~vv~~ 356 (373)
T 2mad_H 349 GAGDQDQS 356 (373)
T ss_pred CCCCEEee
Confidence 98887666
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=98.75 E-value=9.7e-08 Score=100.97 Aligned_cols=212 Identities=8% Similarity=-0.026 Sum_probs=115.1
Q ss_pred CEEEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCc----eecccccceeeeeEEEEeCCcEEEEEEecCCCCCCCC
Q 004766 131 TAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQI----VEADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDM 206 (732)
Q Consensus 131 ~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~----~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~ 206 (732)
...+..+.|||||++|+.... + .+|++||+.+++ .............++|+||++.|+....+.
T Consensus 55 ~~~v~~~~~s~~~~~l~s~s~-d----~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~------- 122 (377)
T 3dwl_C 55 DKIVTCVDWAPKSNRIVTCSQ-D----RNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGAR------- 122 (377)
T ss_dssp SSCEEEEEECTTTCCEEEEET-T----SSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSS-------
T ss_pred CceEEEEEEeCCCCEEEEEeC-C----CeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCC-------
Confidence 345778999999999886642 2 369999999877 221111222357899999999888876432
Q ss_pred CCCCcccCCcccEEEEEECCCCCCC-CeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCccc
Q 004766 207 DAGTETDSNLYHEFYYHFLGTKQSE-DILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEG 285 (732)
Q Consensus 207 ~~~~~~~~~~~~~v~~~~lgt~~~~-~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~ 285 (732)
.|.+|++.++... ....+..+ +...+..++|+|||++|+..+.++. +.++|+.........
T Consensus 123 ------------~i~iwd~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~~~~~d~~-----i~iwd~~~~~~~~~~ 184 (377)
T 3dwl_C 123 ------------VISVCYFEQENDWWVSKHLKRP-LRSTILSLDWHPNNVLLAAGCADRK-----AYVLSAYVRDVDAKP 184 (377)
T ss_dssp ------------CEEECCC-----CCCCEEECSS-CCSCEEEEEECTTSSEEEEEESSSC-----EEEEEECCSSCC-CC
T ss_pred ------------eEEEEEECCcccceeeeEeecc-cCCCeEEEEEcCCCCEEEEEeCCCE-----EEEEEEEecccCCCc
Confidence 4778888765421 11222221 3345678999999999887765433 667776432100000
Q ss_pred -ccccCCCCCcEEeee--cccceE--EEEEecCCeEEEEeCCCCCCceEEEEeCCCCCC----ceEeccCCCCCceeEEE
Q 004766 286 -FKKRDGLLPFVKLID--GFDAQY--EVIANDDTVFTFLTNKDAPKYKIIRVDLKEPND----WFEVIPEAERDVLESAT 356 (732)
Q Consensus 286 -~~~~~~~~~~~~l~~--~~~~~~--~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~----~~~l~~~~~~~~l~~~~ 356 (732)
....+...+...+.. +....+ ..|+|+|+.|+..+.. ..|..+|+.++.. ...+..+. ..+..+.
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d----~~i~iwd~~~~~~~~~~~~~~~~~~--~~v~~~~ 258 (377)
T 3dwl_C 185 EASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHD----SSVTIAYPSAPEQPPRALITVKLSQ--LPLRSLL 258 (377)
T ss_dssp CSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEETT----TEEC-CEECSTTSCEEECCCEECSS--SCEEEEE
T ss_pred cccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEeCC----CcEEEEECCCCCCcceeeEeecCCC--CceEEEE
Confidence 000000001111221 111112 2589999877765542 3677788877763 23333333 5678899
Q ss_pred EecCCEEEEEEecCCeeEEEEEeCC
Q 004766 357 AVNLNQMIVSYLSDVKYVLQIRDLK 381 (732)
Q Consensus 357 ~~~~~~l~~~~~~~g~~~l~~~d~~ 381 (732)
+++++.+++....++ +.+|+..
T Consensus 259 ~s~~~~~l~~~~~~~---~~~~~~~ 280 (377)
T 3dwl_C 259 WANESAIVAAGYNYS---PILLQGN 280 (377)
T ss_dssp EEETTEEEEEESSSS---EEEECCC
T ss_pred EcCCCCEEEEEcCCc---EEEEEeC
Confidence 998778777776553 4466654
|
| >3bix_A Neuroligin-1, neuroligin I; esterase domain, alpha-beta hydrolase, cell adhesion, cell J glycoprotein, membrane, postsynaptic cell membrane; HET: NAG; 1.80A {Rattus norvegicus} PDB: 3biw_A* 3b3q_A* 3be8_A* 2wqz_A* 2xb6_A* 2vh8_A 3bl8_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=3e-08 Score=110.47 Aligned_cols=126 Identities=21% Similarity=0.221 Sum_probs=84.3
Q ss_pred EEEEEEEcCCCC---CCCCccEEEEEcCCCCccCC-CCcChhHHHHHHhcCcEEEEEcccCCC-CCchhHHhcccccCCc
Q 004766 465 IPMFIVSKKNIK---LDGSHPCLLYGYGGFNISVT-PSFSVSRTILMRHLGAVFCIANIRGGG-EYGEEWHKGGALAKKQ 539 (732)
Q Consensus 465 i~~~~~~p~~~~---~~~~~P~vv~~hG~~~~~~~-~~~~~~~~~~l~~~G~~v~~~~~rG~g-~~g~~~~~~~~~~~~~ 539 (732)
+.+.++.|+... .+++.|+||++|||...... ..+.. ..+....|++|+.+|||.+. +|... ........
T Consensus 112 L~l~v~~P~~~~~~~~~~~~Pv~v~iHGGg~~~g~~~~~~~--~~la~~~~~vvv~~~YRl~~~Gfl~~---~~~~~~~n 186 (574)
T 3bix_A 112 LYLNIYVPTEDDIRDSGGPKPVMVYIHGGSYMEGTGNLYDG--SVLASYGNVIVITVNYRLGVLGFLST---GDQAAKGN 186 (574)
T ss_dssp CEEEEEEEC--------CCEEEEEECCCSSSSSCCGGGSCC--HHHHHHHTCEEEEECCCCHHHHHCCC---SSSSCCCC
T ss_pred CEEEEEECCCCCcCCCCCCCcEEEEECCCcccCCCCCccCc--hhhhccCCEEEEEeCCcCcccccCcC---CCCCCCCc
Confidence 556677786532 23568999999998433222 23443 23444347999999999542 11100 00011233
Q ss_pred cHHHHHHHHHHHHHHcC---CCCCCcEEEEecChhHHHHHHHHhhCC---CeeeEEEEcCCc
Q 004766 540 NCFDDFISASEYLISAG---YTQSRKLCIEGGSNGGLLVGACINQRP---DLFGCALAHVGV 595 (732)
Q Consensus 540 ~~~~D~~~~~~~l~~~~---~~d~~~i~i~G~S~GG~l~~~~~~~~p---~~f~a~v~~~p~ 595 (732)
..+.|..+|++|+.++- -.||+||.|+|.|+||.+++.++.... .+|+++|+.+|.
T Consensus 187 ~gl~D~~~al~wv~~ni~~fggdp~~vti~G~SaGg~~~~~~~~~~~~~~glf~~aI~~Sg~ 248 (574)
T 3bix_A 187 YGLLDLIQALRWTSENIGFFGGDPLRITVFGSGAGGSCVNLLTLSHYSEKGLFQRAIAQSGT 248 (574)
T ss_dssp HHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHTCTTSCTTSCCEEEEESCC
T ss_pred ccHHHHHHHHHHHHHHHHHhCCCchhEEEEeecccHHHHHHHhhCCCcchhHHHHHHHhcCC
Confidence 46899999999999862 269999999999999999998887532 689999998863
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.71 E-value=1.8e-06 Score=90.06 Aligned_cols=241 Identities=7% Similarity=-0.044 Sum_probs=127.7
Q ss_pred EECCCCcEEEEEEeccCCceEEEEEEECCCCceecccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCCcc
Q 004766 138 SVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLY 217 (732)
Q Consensus 138 ~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~~~ 217 (732)
.+++|+++|+-.. ...+|++||+++|+.+..... .....+.|+|+ ++..+.+.. ..-....
T Consensus 43 ~~~~d~~~l~sg~-----~Dg~v~iwd~~~~~~~~~~~~-~~v~~~~~~~~---~~s~s~D~~----------i~~w~~~ 103 (343)
T 3lrv_A 43 SMYYDKWVCMCRC-----EDGALHFTQLKDSKTITTITT-PNPRTGGEHPA---IISRGPCNR----------LLLLYPG 103 (343)
T ss_dssp SSSEEEEEEEEEE-----ETTEEEEEEESSSSCEEEEEE-ECCCTTCCCCS---EEEECSTTE----------EEEEETT
T ss_pred hhcCCCCEEEEEC-----CCCcEEEEECCCCcEEEEEec-CCceeeeeCCc---eEEecCCCe----------EEEEEcc
Confidence 4667888777543 224899999999885432111 12245566666 332221110 0000001
Q ss_pred cEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEec--CCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCCCCc
Q 004766 218 HEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTE--DGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPF 295 (732)
Q Consensus 218 ~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~Sp--Dg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~ 295 (732)
..+..+++.++.. +..+.. .+...+..+.++| +|++++..+.++ .+.++|+.++. ..
T Consensus 104 ~~~~~~~~~~~~~--~~~~~~-~~~~~v~~~~~~~~~~~~~l~s~s~dg-----~i~~wd~~~~~-------------~~ 162 (343)
T 3lrv_A 104 NQITILDSKTNKV--LREIEV-DSANEIIYMYGHNEVNTEYFIWADNRG-----TIGFQSYEDDS-------------QY 162 (343)
T ss_dssp TEEEEEETTTCCE--EEEEEC-CCSSCEEEEECCC---CCEEEEEETTC-----CEEEEESSSSC-------------EE
T ss_pred CceEEeecCCcce--eEEeec-CCCCCEEEEEcCCCCCCCEEEEEeCCC-----cEEEEECCCCc-------------EE
Confidence 1233344433321 111211 1123456899999 999987665433 38888988742 11
Q ss_pred EEeeeccc--ceEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCc-eEeccCCCCCceeEEEEecCCEEEEEEecCCe
Q 004766 296 VKLIDGFD--AQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDW-FEVIPEAERDVLESATAVNLNQMIVSYLSDVK 372 (732)
Q Consensus 296 ~~l~~~~~--~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~-~~l~~~~~~~~l~~~~~~~~~~l~~~~~~~g~ 372 (732)
........ .....|+|+|..|+..+. +..|..+|+.++... ..+.. .....+..+.+++++..+++..++
T Consensus 163 ~~~~~~~~~~i~~~~~~pdg~~lasg~~----dg~i~iwd~~~~~~~~~~~~~-~h~~~v~~l~fs~~g~~l~s~~~~-- 235 (343)
T 3lrv_A 163 IVHSAKSDVEYSSGVLHKDSLLLALYSP----DGILDVYNLSSPDQASSRFPV-DEEAKIKEVKFADNGYWMVVECDQ-- 235 (343)
T ss_dssp EEECCCSSCCCCEEEECTTSCEEEEECT----TSCEEEEESSCTTSCCEECCC-CTTSCEEEEEECTTSSEEEEEESS--
T ss_pred EEEecCCCCceEEEEECCCCCEEEEEcC----CCEEEEEECCCCCCCccEEec-cCCCCEEEEEEeCCCCEEEEEeCC--
Confidence 11111111 122358999886664332 346888999887643 33433 123678899999876666666643
Q ss_pred eEEEEEeCCCCceeeeccc---ccceee--EeecccCCcEEEEEEecCCCCceEEEEECCCC
Q 004766 373 YVLQIRDLKNGSLLHQLPI---EIGSVN--AISARREDSVVFISFTSFLIPGIVYQCNLKTE 429 (732)
Q Consensus 373 ~~l~~~d~~~g~~~~~l~~---~~g~v~--~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~ 429 (732)
.|.+||+.+++....+.. +...+. .+.+++++..++....+ . ..+..|+..++
T Consensus 236 -~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~-d--~~i~v~~~~~~ 293 (343)
T 3lrv_A 236 -TVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNE-S--NSLTIYKFDKK 293 (343)
T ss_dssp -BEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETT-T--TEEEEEEECTT
T ss_pred -eEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCC-C--CcEEEEEEccc
Confidence 799999987765444432 112222 47788999866543221 2 24555555443
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=98.70 E-value=1.1e-06 Score=92.72 Aligned_cols=212 Identities=9% Similarity=0.008 Sum_probs=106.5
Q ss_pred eEEECCCCcE-EEEEEecc-----CC----ceEEEEEEECC-CCceecc-cc----cceeeeeEEEEeCCcEEEEEEecC
Q 004766 136 KVSVSEDAKY-LAYALSYS-----GS----DWATIKLMRIE-DQIVEAD-AL----SWFKFSSIAWTHDSKGFFYSRYPA 199 (732)
Q Consensus 136 ~~~~SPDG~~-la~~~~~~-----G~----e~~~i~v~dl~-~g~~~~~-~~----~~~~~~~~~WspDg~~l~y~~~~~ 199 (732)
.+.|||||++ ++++.+.+ ++ ...++.++++. +|+.... .. ......+++|||||+.|+++..
T Consensus 87 ~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~-- 164 (365)
T 1jof_A 87 ANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADL-- 164 (365)
T ss_dssp GGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEET--
T ss_pred cEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcC--
Confidence 4679999997 45554300 00 11367888886 4653211 10 1223478999999998866531
Q ss_pred CCCCCCCCCCCcccCCcccEEEEEECC-CCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCC
Q 004766 200 PKEGKDMDAGTETDSNLYHEFYYHFLG-TKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSA 278 (732)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~v~~~~lg-t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~ 278 (732)
....|+++++. ++....+.....+........++|||||++|++...... .-.+|.++.++
T Consensus 165 ----------------~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~--~v~v~~~~~~~ 226 (365)
T 1jof_A 165 ----------------TANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGN--RICEYVIDPAT 226 (365)
T ss_dssp ----------------TTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTT--EEEEEEECTTT
T ss_pred ----------------CCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCC--eEEEEEEeCCC
Confidence 12468888887 443211111221111123457899999999876643222 34455555544
Q ss_pred CCCCcccccccCCCCCcEEee---ecc-----------cceEEE-EEecCCeEEEEeCCCCC---CceEEEEeCC-CCCC
Q 004766 279 LPEGLEGFKKRDGLLPFVKLI---DGF-----------DAQYEV-IANDDTVFTFLTNKDAP---KYKIIRVDLK-EPND 339 (732)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~l~---~~~-----------~~~~~~-~s~dg~~l~~~s~~~~~---~~~l~~~d~~-~~~~ 339 (732)
+.... ....+. .+. ...... |+|||+.||+ ++++.. ...|.+++++ ++.
T Consensus 227 g~~~~----------~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v-~~~~~~~~~~~~i~v~~~~~~g~- 294 (365)
T 1jof_A 227 HMPVY----------THHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFA-SSRANKFELQGYIAGFKLRDCGS- 294 (365)
T ss_dssp CCEEE----------EEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEE-EEEESSTTSCCEEEEEEECTTSC-
T ss_pred CcEEE----------ccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEE-ECCCCCCCCCCeEEEEEECCCCC-
Confidence 32000 000111 010 112235 8999998874 443321 1256666664 444
Q ss_pred ceE---eccCCCCCceeEEEEec---C-CEEEEEEecCCeeEEEEEeCCC
Q 004766 340 WFE---VIPEAERDVLESATAVN---L-NQMIVSYLSDVKYVLQIRDLKN 382 (732)
Q Consensus 340 ~~~---l~~~~~~~~l~~~~~~~---~-~~l~~~~~~~g~~~l~~~d~~~ 382 (732)
... +++.. ......+.+++ + +.|++....+ ..|.+|+++.
T Consensus 295 ~~~~~~~~~~~-~~~~~~~a~sp~~~dg~~l~v~~~~~--~~v~v~~~~~ 341 (365)
T 1jof_A 295 IEKQLFLSPTP-TSGGHSNAVSPCPWSDEWMAITDDQE--GWLEIYRWKD 341 (365)
T ss_dssp EEEEEEEEECS-SCCTTCCCEEECTTCTTEEEEECSSS--CEEEEEEEET
T ss_pred EEEeeeeeecC-CCCcccceecCCCcCCCEEEEEEcCC--CeEEEEEEch
Confidence 332 22211 12234556666 4 4555544333 4577777653
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=98.70 E-value=1.3e-05 Score=87.21 Aligned_cols=239 Identities=11% Similarity=0.041 Sum_probs=139.7
Q ss_pred CEEEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecccc-cceeeeeEEEEe--CCcEEEEEEecCCCCCCCCC
Q 004766 131 TAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADAL-SWFKFSSIAWTH--DSKGFFYSRYPAPKEGKDMD 207 (732)
Q Consensus 131 ~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~-~~~~~~~~~Wsp--Dg~~l~y~~~~~~~~~~~~~ 207 (732)
...+..+.|+|++ +|+.. +.+ .+|++||+++++.+.... .......++|++ |++.|+....+
T Consensus 162 ~~~V~~l~~~~~~-~l~s~-s~d----g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d--------- 226 (464)
T 3v7d_B 162 DGGVWALKYAHGG-ILVSG-STD----RTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRD--------- 226 (464)
T ss_dssp SSCEEEEEECSTT-EEEEE-ETT----SCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETT---------
T ss_pred CcCEEEEEEcCCC-EEEEE-eCC----CCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCC---------
Confidence 3457789999999 44433 222 479999999998543221 122346778884 67777766533
Q ss_pred CCCcccCCcccEEEEEECCCCCCCCe-------------------EEEecCCCCeeEEEeEEecCCcEEEEEEecCCcce
Q 004766 208 AGTETDSNLYHEFYYHFLGTKQSEDI-------------------LCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPV 268 (732)
Q Consensus 208 ~~~~~~~~~~~~v~~~~lgt~~~~~~-------------------~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~ 268 (732)
..|.+|++.+...... ++.....+.... ..++++|++++....++
T Consensus 227 ----------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~l~~~~~d~---- 290 (464)
T 3v7d_B 227 ----------NTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASV--RTVSGHGNIVVSGSYDN---- 290 (464)
T ss_dssp ----------SCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCE--EEEEEETTEEEEEETTS----
T ss_pred ----------CcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceE--EEEcCCCCEEEEEeCCC----
Confidence 2477777765432210 011111111122 34589999988766443
Q ss_pred EEEEEEeCCCCCCCcccccccCCCCCcEEeeecccceE-EEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCC
Q 004766 269 NKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQY-EVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEA 347 (732)
Q Consensus 269 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~ 347 (732)
.|.++|+.++. ....+........ ..|+|+|+.++..+.. ..|..+|+.++.....+..+.
T Consensus 291 -~i~vwd~~~~~-------------~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d----g~i~vwd~~~~~~~~~~~~h~ 352 (464)
T 3v7d_B 291 -TLIVWDVAQMK-------------CLYILSGHTDRIYSTIYDHERKRCISASMD----TTIRIWDLENGELMYTLQGHT 352 (464)
T ss_dssp -CEEEEETTTTE-------------EEEEECCCSSCEEEEEEETTTTEEEEEETT----SCEEEEETTTTEEEEEECCCS
T ss_pred -eEEEEECCCCc-------------EEEEecCCCCCEEEEEEcCCCCEEEEEeCC----CcEEEEECCCCcEEEEEeCCC
Confidence 38888987632 1222222222222 2588998887765442 358889998876444444443
Q ss_pred CCCceeEEEEecCCEEEEEEecCCeeEEEEEeCCCCceeeecccccceeeEeecccCCcEEEEEEecCCCCceEEEEECC
Q 004766 348 ERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLK 427 (732)
Q Consensus 348 ~~~~l~~~~~~~~~~l~~~~~~~g~~~l~~~d~~~g~~~~~l~~~~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~ 427 (732)
..+..+.+.+ ..+++...++ .|.+||+.+++...... ....+..+.+++++..++. .+ -..+..||+.
T Consensus 353 --~~v~~~~~~~--~~l~s~s~dg--~v~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~-~~----dg~i~iwd~~ 420 (464)
T 3v7d_B 353 --ALVGLLRLSD--KFLVSAAADG--SIRGWDANDYSRKFSYH-HTNLSAITTFYVSDNILVS-GS----ENQFNIYNLR 420 (464)
T ss_dssp --SCEEEEEECS--SEEEEEETTS--EEEEEETTTCCEEEEEE-CTTCCCEEEEEECSSEEEE-EE----TTEEEEEETT
T ss_pred --CcEEEEEEcC--CEEEEEeCCC--cEEEEECCCCceeeeec-CCCCccEEEEEeCCCEEEE-ec----CCeEEEEECC
Confidence 5677777764 4555666664 68999998765432332 2233344556777775543 33 2589999999
Q ss_pred CCC
Q 004766 428 TET 430 (732)
Q Consensus 428 ~~~ 430 (732)
+++
T Consensus 421 ~g~ 423 (464)
T 3v7d_B 421 SGK 423 (464)
T ss_dssp TCC
T ss_pred CCc
Confidence 885
|
| >1ei9_A Palmitoyl protein thioesterase 1; alpha/beta hydrolase, glycoprotein, hydrolase; HET: NDG NAG; 2.25A {Bos taurus} SCOP: c.69.1.13 PDB: 1eh5_A* 1exw_A* 3gro_A | Back alignment and structure |
|---|
Probab=98.69 E-value=2.7e-07 Score=93.13 Aligned_cols=105 Identities=14% Similarity=0.059 Sum_probs=64.9
Q ss_pred cEEEEEcCCCCccCC-CCcChhHHHHHHhc--CcEEEEEcccCCCCCchhHHhcccccCCccHHHHHHHHHHHHHHcCCC
Q 004766 482 PCLLYGYGGFNISVT-PSFSVSRTILMRHL--GAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYT 558 (732)
Q Consensus 482 P~vv~~hG~~~~~~~-~~~~~~~~~~l~~~--G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~ 558 (732)
+.||++||..+.... ..|.. +...|++. |+.|+++|+ |.|....... +.. ....+++.+.++.+......
T Consensus 6 ~pvVllHG~~~~~~~~~~~~~-~~~~L~~~~~g~~v~~~d~-G~g~s~~~~~--~~~---~~~~~~~~~~~~~l~~~~~l 78 (279)
T 1ei9_A 6 LPLVIWHGMGDSCCNPLSMGA-IKKMVEKKIPGIHVLSLEI-GKTLREDVEN--SFF---LNVNSQVTTVCQILAKDPKL 78 (279)
T ss_dssp CCEEEECCTTCCSCCTTTTHH-HHHHHHHHSTTCCEEECCC-SSSHHHHHHH--HHH---SCHHHHHHHHHHHHHSCGGG
T ss_pred CcEEEECCCCCCCCCcccHHH-HHHHHHHHCCCcEEEEEEe-CCCCcccccc--ccc---cCHHHHHHHHHHHHHhhhhc
Confidence 348999998766422 24443 44556544 889999997 7664321111 100 11223333444444332111
Q ss_pred CCCcEEEEecChhHHHHHHHHhhCCCe-eeEEEEcCC
Q 004766 559 QSRKLCIEGGSNGGLLVGACINQRPDL-FGCALAHVG 594 (732)
Q Consensus 559 d~~~i~i~G~S~GG~l~~~~~~~~p~~-f~a~v~~~p 594 (732)
.+++.++||||||+++..++.++|+. .+.+|+..+
T Consensus 79 -~~~~~lvGhSmGG~ia~~~a~~~~~~~v~~lv~~~~ 114 (279)
T 1ei9_A 79 -QQGYNAMGFSQGGQFLRAVAQRCPSPPMVNLISVGG 114 (279)
T ss_dssp -TTCEEEEEETTHHHHHHHHHHHCCSSCEEEEEEESC
T ss_pred -cCCEEEEEECHHHHHHHHHHHHcCCcccceEEEecC
Confidence 26899999999999999999999984 888875543
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=98.68 E-value=5.3e-06 Score=85.94 Aligned_cols=238 Identities=10% Similarity=0.019 Sum_probs=132.8
Q ss_pred CCcEEEEEEeccCCceEEEEEEECCCCceecccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCCcccEEE
Q 004766 142 DAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFY 221 (732)
Q Consensus 142 DG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~~~~~v~ 221 (732)
++++|..+...+ ..|.++|+++++.+...........++++||| .||.+.. ....|+
T Consensus 52 ~~~~lyv~~~~~----~~v~viD~~t~~~~~~i~~~~~p~~i~~~~~g-~lyv~~~------------------~~~~v~ 108 (328)
T 3dsm_A 52 RDGIGWIVVNNS----HVIFAIDINTFKEVGRITGFTSPRYIHFLSDE-KAYVTQI------------------WDYRIF 108 (328)
T ss_dssp ETTEEEEEEGGG----TEEEEEETTTCCEEEEEECCSSEEEEEEEETT-EEEEEEB------------------SCSEEE
T ss_pred ECCEEEEEEcCC----CEEEEEECcccEEEEEcCCCCCCcEEEEeCCC-eEEEEEC------------------CCCeEE
Confidence 456655554322 37999999999865422222234778999998 5655531 234688
Q ss_pred EEECCCCCCCCeEEEecCCC---CeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCCCCcEEe
Q 004766 222 YHFLGTKQSEDILCWKDPEH---PKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKL 298 (732)
Q Consensus 222 ~~~lgt~~~~~~~v~~~~~~---~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l 298 (732)
+++..+..... ....... ......+++ +++.|++... +. ...|.++|++++. ....+
T Consensus 109 ~iD~~t~~~~~--~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~-~~--~~~v~viD~~t~~-------------~~~~i 168 (328)
T 3dsm_A 109 IINPKTYEITG--YIECPDMDMESGSTEQMVQ--YGKYVYVNCW-SY--QNRILKIDTETDK-------------VVDEL 168 (328)
T ss_dssp EEETTTTEEEE--EEECTTCCTTTCBCCCEEE--ETTEEEEEEC-TT--CCEEEEEETTTTE-------------EEEEE
T ss_pred EEECCCCeEEE--EEEcCCccccCCCcceEEE--ECCEEEEEcC-CC--CCEEEEEECCCCe-------------EEEEE
Confidence 88877653211 1121210 001123455 5666655532 11 3569999988742 01122
Q ss_pred eecccceEEEEEecCCeEEEEeCCCCC-------CceEEEEeCCCCCCceEeccCCCCCceeEEEEecC-CEEEEEEecC
Q 004766 299 IDGFDAQYEVIANDDTVFTFLTNKDAP-------KYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNL-NQMIVSYLSD 370 (732)
Q Consensus 299 ~~~~~~~~~~~s~dg~~l~~~s~~~~~-------~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~-~~l~~~~~~~ 370 (732)
..+.......++++|+ +|+.+..... ...|+++|.++++ ....+.-........+.++++ +.+|+.. .
T Consensus 169 ~~g~~p~~i~~~~dG~-l~v~~~~~~~~~~~~~~~~~v~~id~~t~~-v~~~~~~~~g~~p~~la~~~d~~~lyv~~-~- 244 (328)
T 3dsm_A 169 TIGIQPTSLVMDKYNK-MWTITDGGYEGSPYGYEAPSLYRIDAETFT-VEKQFKFKLGDWPSEVQLNGTRDTLYWIN-N- 244 (328)
T ss_dssp ECSSCBCCCEECTTSE-EEEEBCCBCTTCSSCBCCCEEEEEETTTTE-EEEEEECCTTCCCEEEEECTTSCEEEEES-S-
T ss_pred EcCCCccceEEcCCCC-EEEEECCCccCCccccCCceEEEEECCCCe-EEEEEecCCCCCceeEEEecCCCEEEEEc-c-
Confidence 2222222224677775 7766653210 2579999998775 222222111234567888874 5555542 2
Q ss_pred CeeEEEEEeCCCCceeeecccc--cceeeEeecccCCcEEEEEE-ecCCCCceEEEEECCCCC
Q 004766 371 VKYVLQIRDLKNGSLLHQLPIE--IGSVNAISARREDSVVFISF-TSFLIPGIVYQCNLKTET 430 (732)
Q Consensus 371 g~~~l~~~d~~~g~~~~~l~~~--~g~v~~~~~s~d~~~l~~~~-ss~~~p~~~y~~d~~~~~ 430 (732)
.|+++|.++++.......+ ......+..+|+++.++++- .++.....++++|+. ++
T Consensus 245 ---~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~ 303 (328)
T 3dsm_A 245 ---DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GK 303 (328)
T ss_dssp ---SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CC
T ss_pred ---EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CC
Confidence 7999999877652211112 23456778888777787764 334557889999987 64
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=98.66 E-value=2.5e-07 Score=100.20 Aligned_cols=206 Identities=10% Similarity=0.026 Sum_probs=116.9
Q ss_pred EEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCccc
Q 004766 134 LIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETD 213 (732)
Q Consensus 134 ~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~ 213 (732)
+..+.|||||++|+... ....|++||+.+...............++|+|+++.++++...
T Consensus 212 ~~~~~~~~~~~~l~~g~-----~dg~i~~wd~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~--------------- 271 (435)
T 4e54_B 212 FCSLDVSASSRMVVTGD-----NVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASV--------------- 271 (435)
T ss_dssp CCCEEEETTTTEEEEEC-----SSSBEEEEESSSCBCCCSBCCSSCEEEEEECTTCSSEEEEEET---------------
T ss_pred EEEEEECCCCCEEEEEe-----CCCcEeeeccCcceeEEEecccceEEeeeecCCCceEEEEecC---------------
Confidence 34678999999988552 2247999999866543322222235789999999876665422
Q ss_pred CCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCCC
Q 004766 214 SNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLL 293 (732)
Q Consensus 214 ~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~ 293 (732)
...|.+|++.+......++.. ..+...+..++|||||++|+..+.++ .|.++|+.++...
T Consensus 272 ---d~~v~iwd~~~~~~~~~~~~~-~~h~~~v~~~~~spdg~~l~s~~~D~-----~i~iwd~~~~~~~----------- 331 (435)
T 4e54_B 272 ---DQTVKIWDLRQVRGKASFLYS-LPHRHPVNAACFSPDGARLLTTDQKS-----EIRVYSASQWDCP----------- 331 (435)
T ss_dssp ---TSBCCEEETTTCCSSSCCSBC-CBCSSCEEECCBCTTSSEEEEEESSS-----CEEEEESSSSSSE-----------
T ss_pred ---cceeeEEecccccccceEEEe-eeccccccceeECCCCCeeEEEcCCC-----EEEEEECCCCccc-----------
Confidence 234777888665433222211 12233466889999999998765443 3778888764311
Q ss_pred CcEEeeecc-------cceEEEEEecCCeEEEEeCCC--------CCCceEEEEeCCCCCCceEeccCCCCCceeEE-EE
Q 004766 294 PFVKLIDGF-------DAQYEVIANDDTVFTFLTNKD--------APKYKIIRVDLKEPNDWFEVIPEAERDVLESA-TA 357 (732)
Q Consensus 294 ~~~~l~~~~-------~~~~~~~s~dg~~l~~~s~~~--------~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~-~~ 357 (732)
..+.... ......|++++..+++....+ .....|..+|..++.....+..+. ...+..+ .+
T Consensus 332 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~-~~~v~s~~~f 408 (435)
T 4e54_B 332 --LGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPE-SSGISSLNEF 408 (435)
T ss_dssp --EEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSS-CCCCCCEEEE
T ss_pred --eEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCC-CCcEEEEEEE
Confidence 1111100 000123666666555443221 112347788888876444444332 2334444 56
Q ss_pred ecCCEEEEEEecCCeeEEEEEeCCCCce
Q 004766 358 VNLNQMIVSYLSDVKYVLQIRDLKNGSL 385 (732)
Q Consensus 358 ~~~~~l~~~~~~~g~~~l~~~d~~~g~~ 385 (732)
++++.+++... ++ .|++|++++|+.
T Consensus 409 spdg~~lasg~-d~--~i~iW~~~~gk~ 433 (435)
T 4e54_B 409 NPMGDTLASAM-GY--HILIWSQQEART 433 (435)
T ss_dssp CTTSSCEEEEC-SS--EEEECCCC----
T ss_pred CCCCCEEEEEc-CC--cEEEEECCcCee
Confidence 77666666654 43 699999987765
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.66 E-value=1.7e-06 Score=102.38 Aligned_cols=241 Identities=7% Similarity=0.004 Sum_probs=131.7
Q ss_pred EEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecc-c-----------ccceeeeeEEEEeCCcEEEEEEecCCC
Q 004766 134 LIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEAD-A-----------LSWFKFSSIAWTHDSKGFFYSRYPAPK 201 (732)
Q Consensus 134 ~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~-~-----------~~~~~~~~~~WspDg~~l~y~~~~~~~ 201 (732)
+..+++||||++||-.. ...+|++||+.+|..... . ........++|||||+.|+....+.
T Consensus 438 v~sv~~spdg~~laSgs-----~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~Dg-- 510 (902)
T 2oaj_A 438 KRQKLPAEYGTAFITGH-----SNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETG-- 510 (902)
T ss_dssp CCCCCCCSEEEEEEEEE-----TTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTS--
T ss_pred CCcccccccCcEEEEec-----CCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCc--
Confidence 34567899999888443 335899999998853210 0 1112357899999999999876443
Q ss_pred CCCCCCCCCcccCCcccEEEEEECCCCCC---------CC--------------------------------eEEEecCC
Q 004766 202 EGKDMDAGTETDSNLYHEFYYHFLGTKQS---------ED--------------------------------ILCWKDPE 240 (732)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~v~~~~lgt~~~---------~~--------------------------------~~v~~~~~ 240 (732)
.|.+|++.++.. .+ .++.....
T Consensus 511 -----------------tV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~ 573 (902)
T 2oaj_A 511 -----------------DVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHA 573 (902)
T ss_dssp -----------------CEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECC
T ss_pred -----------------EEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEc
Confidence 466666654310 00 11222222
Q ss_pred CCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCCCCcE--Eeeecc-----cceE-EEEE--
Q 004766 241 HPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFV--KLIDGF-----DAQY-EVIA-- 310 (732)
Q Consensus 241 ~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~--~l~~~~-----~~~~-~~~s-- 310 (732)
+...+..+++|||| +|+..+.+ ..|.++|++++.. .. .+ ..+ .... ..|+
T Consensus 574 h~~~V~svafSpdG-~lAsgs~D-----~tv~lwd~~~~~~-------------~~~~~~-~~~~~gh~~~V~sv~Fs~~ 633 (902)
T 2oaj_A 574 NKGKTSAINNSNIG-FVGIAYAA-----GSLMLIDRRGPAI-------------IYMENI-REISGAQSACVTCIEFVIM 633 (902)
T ss_dssp CSCSEEEEEECBTS-EEEEEETT-----SEEEEEETTTTEE-------------EEEEEG-GGTCSSCCCCEEEEEEEEE
T ss_pred CCCcEEEEEecCCc-EEEEEeCC-----CcEEEEECCCCeE-------------EEEeeh-hHhccccccceEEEEEEEE
Confidence 34556789999999 87766543 3477889876310 00 11 111 1111 2488
Q ss_pred ---ecC---CeEEEEeCCCCCCceEEEEeC---CCCCCceEeccCC---CCCceeEEE-Ee-------------------
Q 004766 311 ---NDD---TVFTFLTNKDAPKYKIIRVDL---KEPNDWFEVIPEA---ERDVLESAT-AV------------------- 358 (732)
Q Consensus 311 ---~dg---~~l~~~s~~~~~~~~l~~~d~---~~~~~~~~l~~~~---~~~~l~~~~-~~------------------- 358 (732)
||| ..|+..+++ ..|..+|+ .+++....+..+. .+..+-.+. +.
T Consensus 634 ~~~~Dg~~~~~l~sgs~D----~tv~~wd~~p~~~g~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~ 709 (902)
T 2oaj_A 634 EYGDDGYSSILMVCGTDM----GEVITYKILPASGGKFDVQLMDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSK 709 (902)
T ss_dssp ECTTSSSEEEEEEEEETT----SEEEEEEEEECGGGCEEEEEEEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGG
T ss_pred ecCCCCCcceEEEEEecC----CcEEEEEEecCCCCcEEEEecCceecCCCCceEEEEeEecCCCCcccCCHHHHhccCC
Confidence 886 455544443 35666666 4544222332221 012232333 22
Q ss_pred ---cCCEEEEEEecCCeeEEEEEeCCCCceeeecccccceeeEe---e------cccCCcEEEEEEecCCCCceEEEEEC
Q 004766 359 ---NLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAI---S------ARREDSVVFISFTSFLIPGIVYQCNL 426 (732)
Q Consensus 359 ---~~~~l~~~~~~~g~~~l~~~d~~~g~~~~~l~~~~g~v~~~---~------~s~d~~~l~~~~ss~~~p~~~y~~d~ 426 (732)
. +..++...+ ..|++|++.+++..+++-...+.+..+ . .++++..|+.. + .-.++..|++
T Consensus 710 ~~~~-~~~~l~~~~---~~ir~~~~~~~k~~~k~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~-~---~~g~i~~~s~ 781 (902)
T 2oaj_A 710 GLCI-PGIVLITGF---DDIRLITLGKSKSTHKGFKYPLAATGLSYISTVEKNNDRKNLTVIITL-E---INGHLRVFTI 781 (902)
T ss_dssp TCCC-CEEEEEECS---SEEEEECTTCCCEEEEECSSCEEEEEEEEEEEECSSSCEEEEEEEEEE-E---TTSEEEEEET
T ss_pred CCCC-CeEEEEEec---cceEEEeCccccceeeEcccceeeeEEEEEEeccccccccCceEEEEE-e---CCCcEEEEEC
Confidence 2 334444443 479999998888755552223344343 3 34555444332 2 3468999999
Q ss_pred CCCC
Q 004766 427 KTET 430 (732)
Q Consensus 427 ~~~~ 430 (732)
.+.+
T Consensus 782 p~l~ 785 (902)
T 2oaj_A 782 PDFK 785 (902)
T ss_dssp TTCC
T ss_pred cchH
Confidence 8875
|
| >1bu8_A Protein (pancreatic lipase related protein 2); hydrolase, lipid degradation; HET: NAG; 1.80A {Rattus norvegicus} SCOP: b.12.1.2 c.69.1.19 PDB: 2oxe_A* 2pvs_A 1eth_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=4.7e-08 Score=105.51 Aligned_cols=114 Identities=9% Similarity=-0.018 Sum_probs=81.4
Q ss_pred CCCccEEEEEcCCCCccCCCCcChhH-HHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCccHHHHHHHHHHHHHHcC
Q 004766 478 DGSHPCLLYGYGGFNISVTPSFSVSR-TILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAG 556 (732)
Q Consensus 478 ~~~~P~vv~~hG~~~~~~~~~~~~~~-~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~ 556 (732)
+...|+||++||..+.. ...|...+ ..+++..||.|+++|.||.|..... ... ..-....+|+.+.+++|.++.
T Consensus 67 ~~~~p~vvliHG~~~~~-~~~w~~~l~~~l~~~~~~~Vi~~D~~G~G~S~~~--~~~--~~~~~~~~dl~~li~~L~~~~ 141 (452)
T 1bu8_A 67 QLDRKTRFIVHGFIDKG-EDGWLLDMCKKMFQVEKVNCICVDWRRGSRTEYT--QAS--YNTRVVGAEIAFLVQVLSTEM 141 (452)
T ss_dssp CTTSEEEEEECCSCCTT-CTTHHHHHHHHHHTTCCEEEEEEECHHHHSSCHH--HHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCCC-CchHHHHHHHHHHhhCCCEEEEEechhcccCchh--HhH--hhHHHHHHHHHHHHHHHHHhc
Confidence 35679999999987654 23454433 3444434999999999998765421 110 011123567888888887543
Q ss_pred CCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCcc
Q 004766 557 YTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVM 596 (732)
Q Consensus 557 ~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~ 596 (732)
-++.+++.++|||+||.+++.++.++|++++++|...|..
T Consensus 142 g~~~~~i~LvGhSlGg~vA~~~a~~~p~~v~~iv~ldpa~ 181 (452)
T 1bu8_A 142 GYSPENVHLIGHSLGAHVVGEAGRRLEGHVGRITGLDPAE 181 (452)
T ss_dssp CCCGGGEEEEEETHHHHHHHHHHHHTTTCSSEEEEESCBC
T ss_pred CCCccceEEEEEChhHHHHHHHHHhcccccceEEEecCCc
Confidence 3457899999999999999999999999999999876643
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.65 E-value=5.4e-06 Score=87.03 Aligned_cols=206 Identities=11% Similarity=0.012 Sum_probs=121.5
Q ss_pred EEEEeEEECCC--CcEEEEEEeccCCceEEEEEEECCCCc--eec-ccccceeeeeEEEEeC--CcEEEEEEecCCCCCC
Q 004766 132 AALIKVSVSED--AKYLAYALSYSGSDWATIKLMRIEDQI--VEA-DALSWFKFSSIAWTHD--SKGFFYSRYPAPKEGK 204 (732)
Q Consensus 132 ~~~~~~~~SPD--G~~la~~~~~~G~e~~~i~v~dl~~g~--~~~-~~~~~~~~~~~~WspD--g~~l~y~~~~~~~~~~ 204 (732)
..+..+.|||+ |++|+.... + ..|++||+.+++ .+. ..........++|+|+ ++.|+....+
T Consensus 56 ~~v~~~~~~~~~~~~~l~s~~~-d----g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d------ 124 (379)
T 3jrp_A 56 GPVWRVDWAHPKFGTILASCSY-D----GKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSD------ 124 (379)
T ss_dssp SCEEEEEECCGGGCSEEEEEET-T----SCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT------
T ss_pred CcEEEEEeCCCCCCCEEEEecc-C----CEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCC------
Confidence 34678999988 888876532 2 379999999886 221 1112223578999999 8888877533
Q ss_pred CCCCCCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEec-------------CCcEEEEEEecCCcceEEE
Q 004766 205 DMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTE-------------DGQYLVMCIEENCDPVNKV 271 (732)
Q Consensus 205 ~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~Sp-------------Dg~~l~~~~~~~~~~~~~l 271 (732)
..|.+|++.+........+.. +...+..+.|+| |+++|+....++ .|
T Consensus 125 -------------~~i~v~d~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg-----~i 184 (379)
T 3jrp_A 125 -------------GKVSVVEFKENGTTSPIIIDA--HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADN-----LV 184 (379)
T ss_dssp -------------SEEEEEECCTTSCCCEEEEEC--CTTCEEEEEECCCC----------CTTCEEEEEETTS-----CE
T ss_pred -------------CcEEEEecCCCCceeeEEecC--CCCceEEEEEcCccccccccccCCCCCCEEEEEeCCC-----eE
Confidence 368899987764433333333 233467899999 689887765443 37
Q ss_pred EEEeCCCCCCCcccccccCCCCCcEEeeecccce-EEEEEec---CCeEEEEeCCCCCCceEEEEeCCCCCC--ceEecc
Q 004766 272 YYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQ-YEVIAND---DTVFTFLTNKDAPKYKIIRVDLKEPND--WFEVIP 345 (732)
Q Consensus 272 ~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~s~d---g~~l~~~s~~~~~~~~l~~~d~~~~~~--~~~l~~ 345 (732)
+++|+.++... ......+....... ...|+|+ ++.|+..+. + ..|..+|+.++.. ...+..
T Consensus 185 ~i~d~~~~~~~---------~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~-d---g~i~iwd~~~~~~~~~~~~~~ 251 (379)
T 3jrp_A 185 KIWKYNSDAQT---------YVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQ-D---RTCIIWTQDNEQGPWKKTLLK 251 (379)
T ss_dssp EEEEEETTTTE---------EEEEEEECCCSSCEEEEEECCCCSSSEEEEEEET-T---SCEEEEEESSTTSCCEEEESS
T ss_pred EEEEecCCCcc---------eeeEEEEecccCcEeEEEECCCCCCCCeEEEEeC-C---CEEEEEeCCCCCccceeeeec
Confidence 77787653210 00011111111111 2358998 555554333 2 3467777766531 122222
Q ss_pred C-CCCCceeEEEEecCCEEEEEEecCCeeEEEEEeCCCC
Q 004766 346 E-AERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNG 383 (732)
Q Consensus 346 ~-~~~~~l~~~~~~~~~~l~~~~~~~g~~~l~~~d~~~g 383 (732)
. .....+..+.|++++.+++....++ .|++|++.++
T Consensus 252 ~~~~~~~v~~~~~s~~g~~l~~~~~dg--~i~iw~~~~~ 288 (379)
T 3jrp_A 252 EEKFPDVLWRASWSLSGNVLALSGGDN--KVTLWKENLE 288 (379)
T ss_dssp SSCCSSCEEEEEECSSSCCEEEEESSS--SEEEEEEEET
T ss_pred cccCCCcEEEEEEcCCCCEEEEecCCC--cEEEEeCCCC
Confidence 1 1235678899998766666766675 4666776533
|
| >1w52_X Pancreatic lipase related protein 2; detergent, cleaved flap; HET: DDQ; 2.99A {Equus caballus} | Back alignment and structure |
|---|
Probab=98.62 E-value=7.7e-08 Score=103.79 Aligned_cols=114 Identities=10% Similarity=-0.036 Sum_probs=80.4
Q ss_pred CCCccEEEEEcCCCCccCCCCcChhH-HHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCccHHHHHHHHHHHHHHcC
Q 004766 478 DGSHPCLLYGYGGFNISVTPSFSVSR-TILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAG 556 (732)
Q Consensus 478 ~~~~P~vv~~hG~~~~~~~~~~~~~~-~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~ 556 (732)
+...|+||++||..+.. ...|...+ ..+++..||.|+++|.||.|..... ... ..-....+|+.+.+++|.++.
T Consensus 67 ~~~~p~vvliHG~~~~~-~~~w~~~~~~~l~~~~~~~Vi~~D~~g~G~S~~~--~~~--~~~~~~~~dl~~~i~~L~~~~ 141 (452)
T 1w52_X 67 QSSRKTHFVIHGFRDRG-EDSWPSDMCKKILQVETTNCISVDWSSGAKAEYT--QAV--QNIRIVGAETAYLIQQLLTEL 141 (452)
T ss_dssp CTTSCEEEEECCTTCCS-SSSHHHHHHHHHHTTSCCEEEEEECHHHHTSCHH--HHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEEcCCCCCC-CchHHHHHHHHHHhhCCCEEEEEecccccccccH--HHH--HhHHHHHHHHHHHHHHHHHhc
Confidence 35679999999987654 23454433 3444434999999999998765421 111 011223467778888887542
Q ss_pred CCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCcc
Q 004766 557 YTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVM 596 (732)
Q Consensus 557 ~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~ 596 (732)
-.+.+++.++|||+||.+++.++.++|++++.+|...|..
T Consensus 142 g~~~~~i~LvGhSlGg~vA~~~a~~~p~~v~~iv~ldpa~ 181 (452)
T 1w52_X 142 SYNPENVHIIGHSLGAHTAGEAGRRLEGRVGRVTGLDPAE 181 (452)
T ss_dssp CCCGGGEEEEEETHHHHHHHHHHHHTTTCSSEEEEESCBC
T ss_pred CCCcccEEEEEeCHHHHHHHHHHHhcccceeeEEeccccc
Confidence 2456899999999999999999999999999999876643
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=1.7e-05 Score=88.18 Aligned_cols=238 Identities=13% Similarity=0.008 Sum_probs=136.5
Q ss_pred EEECCCCcEEEEEEeccCCceEEEEEEECCCCceecccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCCc
Q 004766 137 VSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNL 216 (732)
Q Consensus 137 ~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~~ 216 (732)
+.|+.|...++|+..... .+|.++|+++++.+.....+....++++||||+++|.+..
T Consensus 159 ~~~~~d~~~~~~V~~~~~---~~V~viD~~t~~v~~~i~~g~~p~~v~~SpDGr~lyv~~~------------------- 216 (567)
T 1qks_A 159 QMNDWDLENLFSVTLRDA---GQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGR------------------- 216 (567)
T ss_dssp CCSCCCGGGEEEEEETTT---TEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEET-------------------
T ss_pred cccccCCCceEEEEeCCC---CeEEEEECCCCeEEEEEeCCCCccceEECCCCCEEEEEcC-------------------
Confidence 346666555666665433 3899999999986643222223468999999998887632
Q ss_pred ccEEEEEECC--CCCCCCeEEEecCCCCeeEEEeEEe----cCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccC
Q 004766 217 YHEFYYHFLG--TKQSEDILCWKDPEHPKYIFSGHVT----EDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRD 290 (732)
Q Consensus 217 ~~~v~~~~lg--t~~~~~~~v~~~~~~~~~~~~~~~S----pDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~ 290 (732)
...|..+++. +.. .+.+.+-.. .-..+++| |||+++++..... ..+.++|..+.+
T Consensus 217 dg~V~viD~~~~t~~----~v~~i~~G~-~P~~ia~s~~~~pDGk~l~v~n~~~----~~v~ViD~~t~~---------- 277 (567)
T 1qks_A 217 DGKVNMIDLWMKEPT----TVAEIKIGS-EARSIETSKMEGWEDKYAIAGAYWP----PQYVIMDGETLE---------- 277 (567)
T ss_dssp TSEEEEEETTSSSCC----EEEEEECCS-EEEEEEECCSTTCTTTEEEEEEEET----TEEEEEETTTCC----------
T ss_pred CCeEEEEECCCCCCc----EeEEEecCC-CCceeEEccccCCCCCEEEEEEccC----CeEEEEECCCCc----------
Confidence 2368889985 432 222222211 23578999 7999997765432 347788877632
Q ss_pred CCCCcEEeee-c--c-------cce--EEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCce-EeccCCCCCceeEEEE
Q 004766 291 GLLPFVKLID-G--F-------DAQ--YEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWF-EVIPEAERDVLESATA 357 (732)
Q Consensus 291 ~~~~~~~l~~-~--~-------~~~--~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~-~l~~~~~~~~l~~~~~ 357 (732)
....+.. + . ... ..+.++++..+++.. .+ .++|+.+|..+..... .-++. ...+.++.+
T Consensus 278 ---~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~-~~--~g~v~~vd~~~~~~~~v~~i~~--~~~~~d~~~ 349 (567)
T 1qks_A 278 ---PKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNV-KE--TGKILLVDYTDLNNLKTTEISA--ERFLHDGGL 349 (567)
T ss_dssp ---EEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEE-TT--TTEEEEEETTCSSEEEEEEEEC--CSSEEEEEE
T ss_pred ---EEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEe-cC--CCeEEEEecCCCccceeeeeec--cccccCceE
Confidence 1111111 1 0 001 123567776666544 22 4589999987654111 11222 245677888
Q ss_pred ecCCE-EEEEEecCCeeEEEEEeCCCCceeeeccc-c----cceeeEeecccCCcEEEEEEecCCCCceEEEEECCC
Q 004766 358 VNLNQ-MIVSYLSDVKYVLQIRDLKNGSLLHQLPI-E----IGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKT 428 (732)
Q Consensus 358 ~~~~~-l~~~~~~~g~~~l~~~d~~~g~~~~~l~~-~----~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~ 428 (732)
+++++ +++.... ..+|.++|+++++....+.. . .+....+ .++++..++++. -.....+..+|..+
T Consensus 350 ~pdgr~~~va~~~--sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~--~~g~~~Vsvid~~~ 421 (567)
T 1qks_A 350 DGSHRYFITAANA--RNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATS--HMGDDSVALIGTDP 421 (567)
T ss_dssp CTTSCEEEEEEGG--GTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEE--BSSSSEEEEEECCT
T ss_pred CCCCCEEEEEeCC--CCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeC--CCCCCeEEEecCCC
Confidence 87655 4444433 35799999998886555554 2 2211112 356666665432 22335677888765
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.61 E-value=5.2e-06 Score=89.54 Aligned_cols=209 Identities=7% Similarity=-0.003 Sum_probs=121.8
Q ss_pred EEEEeEEECCCCcEEEEEEeccCCceEEEEEEECC---CCceecccc-------------cceeeeeE--EEEeCCcEEE
Q 004766 132 AALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIE---DQIVEADAL-------------SWFKFSSI--AWTHDSKGFF 193 (732)
Q Consensus 132 ~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~---~g~~~~~~~-------------~~~~~~~~--~WspDg~~l~ 193 (732)
..+..+.|+||+++|+.... ...|++||++ +|+.+.... .......+ .|+||++.|+
T Consensus 112 ~~v~~~~~~~~~~~l~s~s~-----dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 186 (437)
T 3gre_A 112 STVTQITMIPNFDAFAVSSK-----DGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLV 186 (437)
T ss_dssp SCEEEEEECTTSSEEEEEET-----TSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEE
T ss_pred CCEEEEEEeCCCCEEEEEeC-----CCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEE
Confidence 34778999999999886532 2479999985 454321100 00111222 2667888777
Q ss_pred EEEecCCCCCCCCCCCCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEE
Q 004766 194 YSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYY 273 (732)
Q Consensus 194 y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~ 273 (732)
....+ ..|++|++.++.. +..+....+...+..++|+|||++|+..+.++ .|.+
T Consensus 187 ~~~~d-------------------~~i~iwd~~~~~~--~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg-----~i~i 240 (437)
T 3gre_A 187 ALTNL-------------------SRVIIFDIRTLER--LQIIENSPRHGAVSSICIDEECCVLILGTTRG-----IIDI 240 (437)
T ss_dssp EEETT-------------------SEEEEEETTTCCE--EEEEECCGGGCCEEEEEECTTSCEEEEEETTS-----CEEE
T ss_pred EEeCC-------------------CeEEEEeCCCCee--eEEEccCCCCCceEEEEECCCCCEEEEEcCCC-----eEEE
Confidence 76533 3689999977542 23333321234567899999999998766543 3788
Q ss_pred EeCCCCCCCcccccccCCCCCcEEeeecccceEE--EEE----ecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCC
Q 004766 274 CDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYE--VIA----NDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEA 347 (732)
Q Consensus 274 ~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~s----~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~ 347 (732)
+|+.++. +...+.......+. .|+ +++..|+ .... +..|..+|+.++.....+..+.
T Consensus 241 wd~~~~~-------------~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~-s~~~---dg~i~iwd~~~~~~~~~~~~~~ 303 (437)
T 3gre_A 241 WDIRFNV-------------LIRSWSFGDHAPITHVEVCQFYGKNSVIVV-GGSS---KTFLTIWNFVKGHCQYAFINSD 303 (437)
T ss_dssp EETTTTE-------------EEEEEBCTTCEEEEEEEECTTTCTTEEEEE-EEST---TEEEEEEETTTTEEEEEEESSS
T ss_pred EEcCCcc-------------EEEEEecCCCCceEEEEeccccCCCccEEE-EEcC---CCcEEEEEcCCCcEEEEEEcCC
Confidence 8987632 12222111111111 233 3443333 3322 3578888988765333333221
Q ss_pred ------------------------CCCceeEEEEecCCEEEEEEecCCeeEEEEEeCCCCceeeeccc
Q 004766 348 ------------------------ERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPI 391 (732)
Q Consensus 348 ------------------------~~~~l~~~~~~~~~~l~~~~~~~g~~~l~~~d~~~g~~~~~l~~ 391 (732)
....+..+.+++ +.++++...++ .|++||+.+++....+..
T Consensus 304 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~--~i~~wd~~~~~~~~~~~~ 368 (437)
T 3gre_A 304 EQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVSN-DKILLTDEATS--SIVMFSLNELSSSKAVIS 368 (437)
T ss_dssp SCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEET-TEEEEEEGGGT--EEEEEETTCGGGCEEEEC
T ss_pred CCCccceecccccccccceecccccCCceEEEEECC-ceEEEecCCCC--eEEEEECCCcccceEEec
Confidence 112356677774 77888887774 799999988876555543
|
| >1ex9_A Lactonizing lipase; alpha-beta hydrolase fold, phosphonate inhibitor; HET: OCP; 2.54A {Pseudomonas aeruginosa} SCOP: c.69.1.18 | Back alignment and structure |
|---|
Probab=98.60 E-value=1.1e-07 Score=96.50 Aligned_cols=101 Identities=15% Similarity=0.148 Sum_probs=75.3
Q ss_pred CCccEEEEEcCCCCccC---CCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCccHHHHHHHHHHHHHHc
Q 004766 479 GSHPCLLYGYGGFNISV---TPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISA 555 (732)
Q Consensus 479 ~~~P~vv~~hG~~~~~~---~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~ 555 (732)
++.|.||++||..+... ...|.. +...|.++||.|+.+|+||.|... ...+++.+.++.+++.
T Consensus 5 ~~~~~vvlvHG~~~~~~~~~~~~~~~-~~~~L~~~G~~v~~~d~~g~g~s~-------------~~~~~~~~~i~~~~~~ 70 (285)
T 1ex9_A 5 QTKYPIVLAHGMLGFDNILGVDYWFG-IPSALRRDGAQVYVTEVSQLDTSE-------------VRGEQLLQQVEEIVAL 70 (285)
T ss_dssp CCSSCEEEECCTTCCSEETTEESSTT-HHHHHHHTTCCEEEECCCSSSCHH-------------HHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEeCCCCCCccccccccHHH-HHHHHHhCCCEEEEEeCCCCCCch-------------hhHHHHHHHHHHHHHH
Confidence 45688999999877643 224443 445566699999999999876421 2345666666655544
Q ss_pred CCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCc
Q 004766 556 GYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGV 595 (732)
Q Consensus 556 ~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~ 595 (732)
.+.+++.++|||+||.++..++.++|+.++++|+..|.
T Consensus 71 --~~~~~v~lvGhS~GG~~a~~~a~~~p~~v~~lv~i~~p 108 (285)
T 1ex9_A 71 --SGQPKVNLIGHSHGGPTIRYVAAVRPDLIASATSVGAP 108 (285)
T ss_dssp --HCCSCEEEEEETTHHHHHHHHHHHCGGGEEEEEEESCC
T ss_pred --hCCCCEEEEEECHhHHHHHHHHHhChhheeEEEEECCC
Confidence 23468999999999999999999999999999988774
|
| >1ys1_X Lipase; CIS peptide Leu 234, Ca2+ ION, inhibitor hexylphosphonic acid (R) 2-methyl-3-phenylpropyl ester, hydrolase; HET: 2HR; 1.10A {Burkholderia cepacia} PDB: 1ys2_X* 4lip_D 1hqd_A 2lip_A 1oil_A* 3lip_A 2nw6_A 5lip_A* 1cvl_A 2es4_A 1tah_B 1qge_D 1qge_E | Back alignment and structure |
|---|
Probab=98.60 E-value=1.5e-07 Score=96.82 Aligned_cols=104 Identities=16% Similarity=0.127 Sum_probs=77.5
Q ss_pred CCccEEEEEcCCCCccCC----CCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCccHHHHHHHHHHHHHH
Q 004766 479 GSHPCLLYGYGGFNISVT----PSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLIS 554 (732)
Q Consensus 479 ~~~P~vv~~hG~~~~~~~----~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~ 554 (732)
.+.|+||++||..+.... ..|.. +...|.++||.|+++|+||.|.... .....+++.+.++.+++
T Consensus 6 ~~~~~vVlvHG~~~~~~~~~~~~~w~~-l~~~L~~~G~~V~~~d~~g~g~s~~----------~~~~~~~l~~~i~~~l~ 74 (320)
T 1ys1_X 6 ATRYPIILVHGLTGTDKYAGVLEYWYG-IQEDLQQRGATVYVANLSGFQSDDG----------PNGRGEQLLAYVKTVLA 74 (320)
T ss_dssp CCSSCEEEECCTTCCSEETTTEESSTT-HHHHHHHTTCCEEECCCCSSCCSSS----------TTSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCccccchHHHHHH-HHHHHHhCCCEEEEEcCCCCCCCCC----------CCCCHHHHHHHHHHHHH
Confidence 456889999998776421 34444 4455666999999999999775321 12345666666666655
Q ss_pred cCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCc
Q 004766 555 AGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGV 595 (732)
Q Consensus 555 ~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~ 595 (732)
. .+.+++.++|||+||+++..++.++|++++++|...+.
T Consensus 75 ~--~~~~~v~lvGHS~GG~va~~~a~~~p~~V~~lV~i~~p 113 (320)
T 1ys1_X 75 A--TGATKVNLVGHSQGGLTSRYVAAVAPDLVASVTTIGTP 113 (320)
T ss_dssp H--HCCSCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCC
T ss_pred H--hCCCCEEEEEECHhHHHHHHHHHhChhhceEEEEECCC
Confidence 4 24568999999999999999999999999999988774
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=98.59 E-value=3.3e-05 Score=83.54 Aligned_cols=234 Identities=13% Similarity=0.080 Sum_probs=136.7
Q ss_pred EEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecccc-cceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcc
Q 004766 134 LIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADAL-SWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTET 212 (732)
Q Consensus 134 ~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~-~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~ 212 (732)
+..+.+ ++++|+... ...+|++||+.+++.+.... .......+.| |++.|+....+
T Consensus 202 v~~~~~--~~~~l~s~s-----~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d-------------- 258 (445)
T 2ovr_B 202 VRCMHL--HEKRVVSGS-----RDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYD-------------- 258 (445)
T ss_dssp EEEEEE--ETTEEEEEE-----TTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETT--------------
T ss_pred EEEEEe--cCCEEEEEe-----CCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCC--------------
Confidence 444445 355555442 12478889988887543211 1112345555 77777766432
Q ss_pred cCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCC
Q 004766 213 DSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGL 292 (732)
Q Consensus 213 ~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~ 292 (732)
..|.+|++.++. .+.....+...+..+.+ ||++++....++ .+.++|+.++.
T Consensus 259 -----g~i~iwd~~~~~----~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~-----~i~i~d~~~~~------------ 310 (445)
T 2ovr_B 259 -----FMVKVWDPETET----CLHTLQGHTNRVYSLQF--DGIHVVSGSLDT-----SIRVWDVETGN------------ 310 (445)
T ss_dssp -----SCEEEEEGGGTE----EEEEECCCSSCEEEEEE--CSSEEEEEETTS-----CEEEEETTTCC------------
T ss_pred -----CEEEEEECCCCc----EeEEecCCCCceEEEEE--CCCEEEEEeCCC-----eEEEEECCCCC------------
Confidence 357888876542 22222222334445555 899887665433 38888987742
Q ss_pred CCcEEeeecccceEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCC-CCCceeEEEEecCCEEEEEEecCC
Q 004766 293 LPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEA-ERDVLESATAVNLNQMIVSYLSDV 371 (732)
Q Consensus 293 ~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~-~~~~l~~~~~~~~~~l~~~~~~~g 371 (732)
....+ .+.......++++++.++..+. +..|..+|+.++.....+..+. ....+..+.+.+ .++++...++
T Consensus 311 -~~~~~-~~~~~~v~~~~~~~~~l~~~~~----dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~~~dg 382 (445)
T 2ovr_B 311 -CIHTL-TGHQSLTSGMELKDNILVSGNA----DSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK--NFVITSSDDG 382 (445)
T ss_dssp -EEEEE-CCCCSCEEEEEEETTEEEEEET----TSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECS--SEEEEEETTS
T ss_pred -EEEEE-cCCcccEEEEEEeCCEEEEEeC----CCeEEEEECCCCcEEEEEccCCCCCCCEEEEEECC--CEEEEEeCCC
Confidence 12222 2222233446667776665443 3468889998776444443311 234577777753 4566666664
Q ss_pred eeEEEEEeCCCCceeeecc-----cccceeeEeecccCCcEEEEEEecCCCCceEEEEECCC
Q 004766 372 KYVLQIRDLKNGSLLHQLP-----IEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKT 428 (732)
Q Consensus 372 ~~~l~~~d~~~g~~~~~l~-----~~~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~ 428 (732)
.|.+||+.+|+.+..+. ...+.+..+.+++++..++....+-+.+..++.+|...
T Consensus 383 --~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 383 --TVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp --EEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred --eEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCC
Confidence 78999999888766662 23566788888988775555444444467788888754
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=98.58 E-value=6.8e-06 Score=85.90 Aligned_cols=246 Identities=13% Similarity=0.028 Sum_probs=127.4
Q ss_pred EECCCCcEEEEEEecc-CCceEEEEEEECCCCceecccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCCc
Q 004766 138 SVSEDAKYLAYALSYS-GSDWATIKLMRIEDQIVEADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNL 216 (732)
Q Consensus 138 ~~SPDG~~la~~~~~~-G~e~~~i~v~dl~~g~~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~~ 216 (732)
.+.|||+++ |+.+.. ......|+++|.++++.+.....+.. .++++||||+++|.+...... + ....+
T Consensus 39 ~~~pd~~~v-yV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~-P~va~spDG~~lyVan~~~~r-------~--~~G~~ 107 (386)
T 3sjl_D 39 APAPDARRV-YVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFL-PNPVVADDGSFIAHASTVFSR-------I--ARGER 107 (386)
T ss_dssp CCCCCTTEE-EEEECGGGCSSEEEEEEETTTTEEEEEEEECSS-CEEEECTTSSCEEEEEEEEEE-------T--TEEEE
T ss_pred ccCCCCCEE-EEEcCcccCCCCEEEEEECCCCeEEEEEECCCC-CcEEECCCCCEEEEEcccccc-------c--ccCCC
Confidence 467999986 555543 11125899999999987643322222 349999999998887421000 0 00012
Q ss_pred ccEEEEEECCCCCCCCeEEEec------CCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccC
Q 004766 217 YHEFYYHFLGTKQSEDILCWKD------PEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRD 290 (732)
Q Consensus 217 ~~~v~~~~lgt~~~~~~~v~~~------~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~ 290 (732)
...|.+++..+......+.... ...+ ..+.+||||++|++... .. .+.+.++|+++++.
T Consensus 108 ~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P---~~~a~spDGk~lyVan~-~~--~~~VsVID~~t~~v--------- 172 (386)
T 3sjl_D 108 TDYVEVFDPVTLLPTADIELPDAPRFLVGTYP---WMTSLTPDGKTLLFYQF-SP--APAVGVVDLEGKAF--------- 172 (386)
T ss_dssp EEEEEEECTTTCCEEEEEEETTCCCCCBSCCG---GGEEECTTSSEEEEEEC-SS--SCEEEEEETTTTEE---------
T ss_pred CCEEEEEECCCCeEEEEEECCCccccccCCCC---ceEEEcCCCCEEEEEEc-CC--CCeEEEEECCCCcE---------
Confidence 3458888887754322221211 0112 25789999999876532 21 25699999987420
Q ss_pred CCCCcEEeeecc--------cceEEEEEecCCeEEEEeCCCCCCceEEEEeCCC-CCCc---eEeccCCCCCceeEEEEe
Q 004766 291 GLLPFVKLIDGF--------DAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKE-PNDW---FEVIPEAERDVLESATAV 358 (732)
Q Consensus 291 ~~~~~~~l~~~~--------~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~-~~~~---~~l~~~~~~~~l~~~~~~ 358 (732)
...+.... ...+...++||+. ..+++.+ +... ..++............+.
T Consensus 173 ----v~tI~v~g~~~~~P~g~~~~~~~~~DG~~--------------~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~ 234 (386)
T 3sjl_D 173 ----KRMLDVPDCYHIFPTAPDTFFMHCRDGSL--------------AKVAFGTEGTPEITHTEVFHPEDEFLINHPAYS 234 (386)
T ss_dssp ----EEEEECCSEEEEEEEETTEEEEEETTSCE--------------EEEECCSSSCCEEEECCCCSCTTSCBCSCCEEE
T ss_pred ----EEEEECCCcceeecCCCceeEEECCCCCE--------------EEEECCCCCeEEEeecceeccccccccccceeE
Confidence 11111100 0011123444443 3333332 1100 011111111111223443
Q ss_pred -cCCEEEEEEecCCeeEEEEEeCCCCc--eeeecc-cc---------cceeeEeecccCCcEEEEEEec-----CCC-Cc
Q 004766 359 -NLNQMIVSYLSDVKYVLQIRDLKNGS--LLHQLP-IE---------IGSVNAISARREDSVVFISFTS-----FLI-PG 419 (732)
Q Consensus 359 -~~~~l~~~~~~~g~~~l~~~d~~~g~--~~~~l~-~~---------~g~v~~~~~s~d~~~l~~~~ss-----~~~-p~ 419 (732)
+++++++... + .+++++|..++. ...++. +. .+....+..+++++++|+.... -.. ..
T Consensus 235 ~~dG~~~~vs~-~--g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~ 311 (386)
T 3sjl_D 235 QKAGRLVWPTY-T--GKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASR 311 (386)
T ss_dssp TTTTEEEEEBT-T--SEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEE
T ss_pred cCCCcEEEEeC-C--CEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCC
Confidence 4566666443 3 479999987443 222232 00 1122235567899999987642 122 36
Q ss_pred eEEEEECCCCC
Q 004766 420 IVYQCNLKTET 430 (732)
Q Consensus 420 ~~y~~d~~~~~ 430 (732)
+++.+|+.+++
T Consensus 312 ~V~viD~~t~k 322 (386)
T 3sjl_D 312 FVVVLDAKTGE 322 (386)
T ss_dssp EEEEEETTTCC
T ss_pred EEEEEECCCCe
Confidence 89999999986
|
| >3icv_A Lipase B, CALB; circular permutation, cleavage on PAIR of basic residues, glycoprotein, hydrolase, lipid degradation, zymogen, disulf; HET: NAG BTB; 1.49A {Candida antarctica} PDB: 3icw_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=2.3e-07 Score=93.92 Aligned_cols=116 Identities=16% Similarity=0.029 Sum_probs=78.9
Q ss_pred EEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCccHHHHHH
Q 004766 467 MFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFI 546 (732)
Q Consensus 467 ~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~ 546 (732)
..|+.|.. .+.+..+.||++||..+... ..|...+...|.++||.|+.+|++|.|... .....+++.
T Consensus 52 ~~i~~p~~-~~~~~~~pVVLvHG~~~~~~-~~w~~~l~~~L~~~Gy~V~a~DlpG~G~~~-----------~~~~~~~la 118 (316)
T 3icv_A 52 AGLTCQGA-SPSSVSKPILLVPGTGTTGP-QSFDSNWIPLSAQLGYTPCWISPPPFMLND-----------TQVNTEYMV 118 (316)
T ss_dssp HTEEETTB-BTTBCSSEEEEECCTTCCHH-HHHTTTHHHHHHHTTCEEEEECCTTTTCSC-----------HHHHHHHHH
T ss_pred hhEeCCCC-CCCCCCCeEEEECCCCCCcH-HHHHHHHHHHHHHCCCeEEEecCCCCCCCc-----------HHHHHHHHH
Confidence 33444533 22345567999999866431 234312456677689999999999876321 112356777
Q ss_pred HHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhC---CCeeeEEEEcCCccc
Q 004766 547 SASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQR---PDLFGCALAHVGVMD 597 (732)
Q Consensus 547 ~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~---p~~f~a~v~~~p~~d 597 (732)
+.++.+.+. ...+++.|+||||||+++..++..+ +++.+.+|+..|...
T Consensus 119 ~~I~~l~~~--~g~~~v~LVGHSmGGlvA~~al~~~p~~~~~V~~lV~lapp~~ 170 (316)
T 3icv_A 119 NAITTLYAG--SGNNKLPVLTWSQGGLVAQWGLTFFPSIRSKVDRLMAFAPDYK 170 (316)
T ss_dssp HHHHHHHHH--TTSCCEEEEEETHHHHHHHHHHHHCGGGTTTEEEEEEESCCTT
T ss_pred HHHHHHHHH--hCCCceEEEEECHHHHHHHHHHHhccccchhhceEEEECCCCC
Confidence 778887765 2336899999999999998777764 589999998877643
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=98.57 E-value=1.4e-06 Score=92.87 Aligned_cols=237 Identities=11% Similarity=-0.029 Sum_probs=121.4
Q ss_pred EEECCCCcEEEEEEeccCCceEEEEEEECCCCceecc------cccceeeeeEEEEe--------CCcEEEEEEecCCCC
Q 004766 137 VSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEAD------ALSWFKFSSIAWTH--------DSKGFFYSRYPAPKE 202 (732)
Q Consensus 137 ~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~------~~~~~~~~~~~Wsp--------Dg~~l~y~~~~~~~~ 202 (732)
..++|++++||-.. ...+|++||+++++.... ......+..++|+| ||+.|+-...|
T Consensus 95 ~~~~~~~~~las~~-----~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D---- 165 (393)
T 4gq1_A 95 NSSPVYSLFLACVC-----QDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDD---- 165 (393)
T ss_dssp --CCEEEEEEEEEE-----TTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETT----
T ss_pred eecCCCCCEEEEEe-----CCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECC----
Confidence 34677777777543 225899999998864221 11112357899998 88888776543
Q ss_pred CCCCCCCCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCC
Q 004766 203 GKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEG 282 (732)
Q Consensus 203 ~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~ 282 (732)
..|.+|++.++.. ...++.. .....+++|+|++..+++..... ..+.++|+.++...
T Consensus 166 ---------------~tv~~Wd~~~~~~-~~~~~~~---~~~v~~v~~~p~~~~~l~~~~~d----~~v~~wd~~t~~~~ 222 (393)
T 4gq1_A 166 ---------------CTLIIWRLTDEGP-ILAGYPL---SSPGISVQFRPSNPNQLIVGERN----GNIRIFDWTLNLSA 222 (393)
T ss_dssp ---------------SEEEEEEEETTEE-EEEEEEC---SSCEEEEEEETTEEEEEEEEETT----SEEEEEETTCCC--
T ss_pred ---------------CeEEEEECCCCce-eeeecCC---CCCcEEEEECCCCCceEEecCCC----CEEEEEECCCCccc
Confidence 3688899865432 1222322 23456899999998665555432 34778888764321
Q ss_pred cccccccCCC--CCcEE----------eeeccc--ceEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCC
Q 004766 283 LEGFKKRDGL--LPFVK----------LIDGFD--AQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAE 348 (732)
Q Consensus 283 ~~~~~~~~~~--~~~~~----------l~~~~~--~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~ 348 (732)
.......... ..... ...... .....+.+||+.++-.+. ...+..+|+.++.....+..+..
T Consensus 223 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~----d~~i~vwd~~~~~~~~~l~~~~~ 298 (393)
T 4gq1_A 223 EENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCK----SGAWLRWNLFANNDYNEISDSTM 298 (393)
T ss_dssp --------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECT----TSEEEEEEC--------------
T ss_pred ccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeC----CCCEEEEECccCCCCceEeeecC
Confidence 1000000000 00000 000000 011223478887765433 23566777755431111111100
Q ss_pred ----------------CCceeEEEEec--CCEEEEEEecCCeeEEEEEeCCCCceeeecccccceeeEeecccCCcEEEE
Q 004766 349 ----------------RDVLESATAVN--LNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFI 410 (732)
Q Consensus 349 ----------------~~~l~~~~~~~--~~~l~~~~~~~g~~~l~~~d~~~g~~~~~l~~~~g~v~~~~~s~d~~~l~~ 410 (732)
........+.+ ++.+++....++ .|++||..+|+....+......|..++++|||+.|+.
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg--~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~ 376 (393)
T 4gq1_A 299 KLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHG--LIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAI 376 (393)
T ss_dssp -----CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTT--EEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEE
T ss_pred ccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCC--EEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEE
Confidence 00011122222 345566666664 7899999888764444434567888999999998765
Q ss_pred E
Q 004766 411 S 411 (732)
Q Consensus 411 ~ 411 (732)
.
T Consensus 377 a 377 (393)
T 4gq1_A 377 A 377 (393)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >2cb9_A Fengycin synthetase; thioesterase, non-ribosomal peptide synthesis, alpha/beta- hydrolases, catalytic triade, hydrolase; 1.8A {Bacillus subtilis} PDB: 2cbg_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=4.5e-07 Score=89.74 Aligned_cols=194 Identities=9% Similarity=-0.065 Sum_probs=106.0
Q ss_pred CCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCccHHHHHHHHHHHHHHcCCC
Q 004766 479 GSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYT 558 (732)
Q Consensus 479 ~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~ 558 (732)
+..|.||++||..+.. ..|. .+...|. .++.|+.+|++|.+. ..+|+.+.++.+.
T Consensus 20 ~~~~~l~~~hg~~~~~--~~~~-~~~~~l~-~~~~v~~~d~~g~~~----------------~~~~~~~~i~~~~----- 74 (244)
T 2cb9_A 20 QGGKNLFCFPPISGFG--IYFK-DLALQLN-HKAAVYGFHFIEEDS----------------RIEQYVSRITEIQ----- 74 (244)
T ss_dssp CCSSEEEEECCTTCCG--GGGH-HHHHHTT-TTSEEEEECCCCSTT----------------HHHHHHHHHHHHC-----
T ss_pred CCCCCEEEECCCCCCH--HHHH-HHHHHhC-CCceEEEEcCCCHHH----------------HHHHHHHHHHHhC-----
Confidence 3467899999987653 2343 3445566 789999999998421 2456665555442
Q ss_pred CCCcEEEEecChhHHHHHHHHhhC---CCeeeEEEEcCCcccccccccCCCCCccccccCCCCCHHHH----HHHHhcCc
Q 004766 559 QSRKLCIEGGSNGGLLVGACINQR---PDLFGCALAHVGVMDMLRYHKFTIGHAWVSDFGCSEEEEEF----YWLIKYSP 631 (732)
Q Consensus 559 d~~~i~i~G~S~GG~l~~~~~~~~---p~~f~a~v~~~p~~d~~~~~~~~~~~~~~~~~g~p~~~~~~----~~~~~~sp 631 (732)
..+++.++|+|+||.++..++.+. ++....+|+..+............... ..++-.+...+.+ ..+..+..
T Consensus 75 ~~~~~~l~GhS~Gg~va~~~a~~~~~~~~~v~~lvl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (244)
T 2cb9_A 75 PEGPYVLLGYSAGGNLAFEVVQAMEQKGLEVSDFIIVDAYKKDQSITADTENDD-SAAYLPEAVRETVMQKKRCYQEYWA 153 (244)
T ss_dssp SSSCEEEEEETHHHHHHHHHHHHHHHTTCCEEEEEEESCCCCCSCCCCC--------CCSCHHHHHHHTHHHHHHHHHHH
T ss_pred CCCCEEEEEECHhHHHHHHHHHHHHHcCCCccEEEEEcCCCCcccccccccHHH-HHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 135799999999999999888764 567777776655432100000000000 0111111000111 11122211
Q ss_pred c-cCCCCCCCCCCCCCCCCCeEEEEeeC--CCCCCCchHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeCCCCC--CCCC
Q 004766 632 L-HNVRRPWEQNPDKPFQYPSTLLLTAD--HDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGH--GVGL 706 (732)
Q Consensus 632 ~-~~~~~~~~~~~~~~~~~~p~Li~~g~--~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH--~~~~ 706 (732)
. .... .+..|+|+++|. +|. +++... ..+++. ....+.++++++ || .+..
T Consensus 154 ~~~~~~----------~i~~Pvl~i~g~~~~D~-~~~~~~----~~w~~~---------~~~~~~~~~i~g-gH~~~~~~ 208 (244)
T 2cb9_A 154 QLINEG----------RIKSNIHFIEAGIQTET-SGAMVL----QKWQDA---------AEEGYAEYTGYG-AHKDMLEG 208 (244)
T ss_dssp HCCCCS----------CBSSEEEEEECSBCSCC-CHHHHT----TSSGGG---------BSSCEEEEECSS-BGGGTTSH
T ss_pred hhccCC----------CcCCCEEEEEccCcccc-ccccch----hHHHHh---------cCCCCEEEEecC-ChHHHcCh
Confidence 0 1222 278899999999 786 433221 222222 023578899986 99 5543
Q ss_pred chHHHHHHHHHHHHHHHHH
Q 004766 707 PTQKMIDEAADRYGFMAKM 725 (732)
Q Consensus 707 ~~~~~~~~~~~~~~fl~~~ 725 (732)
+. .....+.+.+||.+.
T Consensus 209 ~~--~~~~~~~i~~~L~~~ 225 (244)
T 2cb9_A 209 EF--AEKNANIILNILDKI 225 (244)
T ss_dssp HH--HHHHHHHHHHHHHTC
T ss_pred HH--HHHHHHHHHHHHhcC
Confidence 22 234455667787654
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=98.54 E-value=3.2e-05 Score=82.21 Aligned_cols=78 Identities=10% Similarity=0.156 Sum_probs=51.7
Q ss_pred EEEecCCeEEEEeCCC------CCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecCCE-EEEEEecCCeeEEEEEeC
Q 004766 308 VIANDDTVFTFLTNKD------APKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQ-MIVSYLSDVKYVLQIRDL 380 (732)
Q Consensus 308 ~~s~dg~~l~~~s~~~------~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~~-l~~~~~~~g~~~l~~~d~ 380 (732)
.+++||+++|+..... .+...|..+|+++.+....+ +-. ....++.+++|++ +++..... ...|.++|.
T Consensus 325 a~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I-~vg--~~P~gia~spDg~~~lyv~n~~-s~~VsVID~ 400 (426)
T 3c75_H 325 AYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKI-ELG--HEIDSINVSQDAEPLLYALSAG-TQTLHIYDA 400 (426)
T ss_dssp EEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEE-EEE--EEECEEEECCSSSCEEEEEETT-TTEEEEEET
T ss_pred EEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEE-ECC--CCcCeEEEccCCCEEEEEEcCC-CCeEEEEEC
Confidence 5789999998764211 12457999999988733333 211 2345678887655 55555532 257999999
Q ss_pred CCCceeeec
Q 004766 381 KNGSLLHQL 389 (732)
Q Consensus 381 ~~g~~~~~l 389 (732)
++++.+++|
T Consensus 401 ~t~kvv~tI 409 (426)
T 3c75_H 401 ATGEELRSV 409 (426)
T ss_dssp TTCCEEEEE
T ss_pred CCCCEEEEe
Confidence 999887776
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.54 E-value=2.8e-06 Score=93.84 Aligned_cols=220 Identities=11% Similarity=0.070 Sum_probs=128.7
Q ss_pred EEeEEECCC------CcEEEEEEeccCCceEEEEEEECCCCcee------------cccccceeeeeEEEEeCCcEEEEE
Q 004766 134 LIKVSVSED------AKYLAYALSYSGSDWATIKLMRIEDQIVE------------ADALSWFKFSSIAWTHDSKGFFYS 195 (732)
Q Consensus 134 ~~~~~~SPD------G~~la~~~~~~G~e~~~i~v~dl~~g~~~------------~~~~~~~~~~~~~WspDg~~l~y~ 195 (732)
+..++|||+ |++||-+.. + .+|++||+.++... ...........++|+|++ .|+..
T Consensus 210 V~~v~wsp~~~~~~~~~~LAs~s~-D----gtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~lasg 283 (524)
T 2j04_B 210 VWDLKWHEGCHAPHLVGCLSFVSQ-E----GTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-TVVCG 283 (524)
T ss_dssp EEEEEECSSCCCSSSSCEEEEEET-T----SCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-EEEEE
T ss_pred EEEEEECCCCCCCCCCceEEEEec-C----CeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC-eEEEE
Confidence 567889997 567775532 2 47999999876421 001111234789999875 56655
Q ss_pred EecCCCCCCCCCCCCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEe--EEecCC-cEEEEEEecCCcceEEEE
Q 004766 196 RYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSG--HVTEDG-QYLVMCIEENCDPVNKVY 272 (732)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~--~~SpDg-~~l~~~~~~~~~~~~~l~ 272 (732)
+.+ ..|.+|++.++... ...+... ...+.++ .++|+| +.|+-.+.+ ..+.
T Consensus 284 s~D-------------------gtV~lWD~~~~~~~-~~~~~~H--~~~V~sv~~~~s~~g~~~laS~S~D-----~tvk 336 (524)
T 2j04_B 284 FKN-------------------GFVAEFDLTDPEVP-SFYDQVH--DSYILSVSTAYSDFEDTVVSTVAVD-----GYFY 336 (524)
T ss_dssp ETT-------------------SEEEEEETTBCSSC-SEEEECS--SSCEEEEEEECCTTSCCEEEEEETT-----SEEE
T ss_pred eCC-------------------CEEEEEECCCCCCc-eEEeecc--cccEEEEEEEcCCCCCeEEEEeccC-----CeEE
Confidence 433 36899999865322 2233332 2345566 678998 655544432 2377
Q ss_pred EEeCCCCCCCcccccccCCCCCcEEeeeccc---ceEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCC
Q 004766 273 YCDLSALPEGLEGFKKRDGLLPFVKLIDGFD---AQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAER 349 (732)
Q Consensus 273 ~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~ 349 (732)
++|+.++. ....+..... .....|+|+++.++. +.. ...+..+|+.++.....+..+.
T Consensus 337 lWD~~~~~-------------~~~~~~~~~~~~~v~~v~fsp~~~~l~s-~~~---d~tv~lwd~~~~~~~~~l~gH~-- 397 (524)
T 2j04_B 337 IFNPKDIA-------------TTKTTVSRFRGSNLVPVVYCPQIYSYIY-SDG---ASSLRAVPSRAAFAVHPLVSRE-- 397 (524)
T ss_dssp EECGGGHH-------------HHCEEEEECSCCSCCCEEEETTTTEEEE-ECS---SSEEEEEETTCTTCCEEEEECS--
T ss_pred EEECCCCC-------------cccccccccccCcccceEeCCCcCeEEE-eCC---CCcEEEEECcccccceeeecCC--
Confidence 88887632 1112222111 112358999887553 322 2357788988776445566654
Q ss_pred CceeEEEEecCCEEEEEEecCCeeEEEEEeCCCCceeeecccc-----cceeeEeecccCCcEE
Q 004766 350 DVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIE-----IGSVNAISARREDSVV 408 (732)
Q Consensus 350 ~~l~~~~~~~~~~l~~~~~~~g~~~l~~~d~~~g~~~~~l~~~-----~g~v~~~~~s~d~~~l 408 (732)
..+.++.+++++.++++...|+ .|.+|++. ++.+...... ...+..++++++++.+
T Consensus 398 ~~V~sva~Sp~g~~l~Sgs~Dg--tv~lwd~~-~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~ 458 (524)
T 2j04_B 398 TTITAIGVSRLHPMVLAGSADG--SLIITNAA-RRLLHGIKNSSATQKSLRLWKWDYSIKDDKY 458 (524)
T ss_dssp SCEEEEECCSSCCBCEEEETTT--EEECCBSC-SSTTTCC------CCCCEEEECBCCSSSCEE
T ss_pred CceEEEEeCCCCCeEEEEECCC--EEEEEech-HhhccccccCccceeeeEEEEeccCCCCCeE
Confidence 5688899998777788888885 68888875 3222211100 1124466778888744
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=98.52 E-value=2.3e-05 Score=84.42 Aligned_cols=208 Identities=9% Similarity=0.023 Sum_probs=120.8
Q ss_pred eeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCCcccEEEEEECCCC--------CCCCeEEEecCCCCeeEEEeEEe
Q 004766 180 FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTK--------QSEDILCWKDPEHPKYIFSGHVT 251 (732)
Q Consensus 180 ~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~--------~~~~~~v~~~~~~~~~~~~~~~S 251 (732)
...++|+|++..++++.. ....|++|++.+. .......+... ......++|+
T Consensus 131 v~~l~~~p~~~~~lat~~------------------~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~l~~~ 190 (430)
T 2xyi_A 131 VNRARYMPQNACVIATKT------------------PSSDVLVFDYTKHPSKPEPSGECQPDLRLRGH--QKEGYGLSWN 190 (430)
T ss_dssp CSEEEEETTEEEEEEEEC------------------SSSCEEEEEGGGSCSSCCTTCCCCCSEEEECC--SSCCCCEEEC
T ss_pred EEEEEECCCCCcEEEEEC------------------CCCcEEEEECCCcccccCccccCCCcEEecCC--CCCeEEEEeC
Confidence 478999998655655542 1235888888652 11222223222 2234578999
Q ss_pred cCCc-EEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCCCCcEEeeecccce-EEEEEecCCeEEEEeCCCCCCceE
Q 004766 252 EDGQ-YLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQ-YEVIANDDTVFTFLTNKDAPKYKI 329 (732)
Q Consensus 252 pDg~-~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~s~dg~~l~~~s~~~~~~~~l 329 (732)
|+++ +|+....+ ..|.++++.++...... ..+...+....... ...|+|++..+++.... ...|
T Consensus 191 ~~~~~~l~s~~~d-----g~i~vwd~~~~~~~~~~------~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~---dg~i 256 (430)
T 2xyi_A 191 PNLNGYLLSASDD-----HTICLWDINATPKEHRV------IDAKNIFTGHTAVVEDVAWHLLHESLFGSVAD---DQKL 256 (430)
T ss_dssp TTSTTEEEEECTT-----SCEEEEETTSCCBGGGE------EECSEEECCCSSCEEEEEECSSCTTEEEEEET---TSEE
T ss_pred CCCCCeEEEEeCC-----CeEEEEeCCCCCCCCce------eccceeecCCCCCEeeeEEeCCCCCEEEEEeC---CCeE
Confidence 9999 55544322 23788888763211000 00011221111111 12488855555544433 3478
Q ss_pred EEEeCCCCC---CceEeccCCCCCceeEEEEecCC-EEEEEEecCCeeEEEEEeCCCC-ceeeecccccceeeEeecccC
Q 004766 330 IRVDLKEPN---DWFEVIPEAERDVLESATAVNLN-QMIVSYLSDVKYVLQIRDLKNG-SLLHQLPIEIGSVNAISARRE 404 (732)
Q Consensus 330 ~~~d~~~~~---~~~~l~~~~~~~~l~~~~~~~~~-~l~~~~~~~g~~~l~~~d~~~g-~~~~~l~~~~g~v~~~~~s~d 404 (732)
..+|+.++. ....+..+. ..+..+.+.+++ .++++...++ .|.+||+.+. +.+..+..+.+.+..+.++++
T Consensus 257 ~i~d~~~~~~~~~~~~~~~~~--~~v~~i~~~p~~~~~l~tg~~dg--~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~ 332 (430)
T 2xyi_A 257 MIWDTRNNNTSKPSHTVDAHT--AEVNCLSFNPYSEFILATGSADK--TVALWDLRNLKLKLHSFESHKDEIFQVQWSPH 332 (430)
T ss_dssp EEEETTCSCSSSCSEEEECCS--SCEEEEEECSSCTTEEEEEETTS--EEEEEETTCTTSCSEEEECCSSCEEEEEECSS
T ss_pred EEEECCCCCCCcceeEeecCC--CCeEEEEeCCCCCCEEEEEeCCC--eEEEEeCCCCCCCeEEeecCCCCEEEEEECCC
Confidence 899988762 233343333 568889998754 4787887775 6899998763 334455545667888899999
Q ss_pred CcEEEEEEecCCCCceEEEEECCC
Q 004766 405 DSVVFISFTSFLIPGIVYQCNLKT 428 (732)
Q Consensus 405 ~~~l~~~~ss~~~p~~~y~~d~~~ 428 (732)
++.++++.+.. ..+..||+..
T Consensus 333 ~~~~l~s~~~d---~~i~iwd~~~ 353 (430)
T 2xyi_A 333 NETILASSGTD---RRLHVWDLSK 353 (430)
T ss_dssp CTTEEEEEETT---SCCEEEEGGG
T ss_pred CCCEEEEEeCC---CcEEEEeCCC
Confidence 87766665543 4677888765
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=98.51 E-value=2.4e-06 Score=90.56 Aligned_cols=200 Identities=9% Similarity=-0.080 Sum_probs=119.9
Q ss_pred EEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceeccc------ccceeeeeEEEEe-CCcEEEEEEecCCCCCCC
Q 004766 133 ALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADA------LSWFKFSSIAWTH-DSKGFFYSRYPAPKEGKD 205 (732)
Q Consensus 133 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~------~~~~~~~~~~Wsp-Dg~~l~y~~~~~~~~~~~ 205 (732)
.+..+.|+|++...+++.+. ..+|++||+.+|+.+... ........++|+| |++.|+....+
T Consensus 159 ~v~~~~~~~~~~~~l~s~s~----D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D------- 227 (380)
T 3iz6_a 159 YASSCQYVPDQETRLITGSG----DQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCD------- 227 (380)
T ss_dssp CCCCCBCCSSSSSCEEEECT----TSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETT-------
T ss_pred ceEEEEEecCCCCEEEEECC----CCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECC-------
Confidence 34567789976543334322 247999999998854311 1111246778876 77766665433
Q ss_pred CCCCCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCccc
Q 004766 206 MDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEG 285 (732)
Q Consensus 206 ~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~ 285 (732)
..|.+|++..... .+..+.. +...+..++|+|||++|+..+.++ .+.++|+.++..
T Consensus 228 ------------~~v~~wd~~~~~~-~~~~~~~--h~~~v~~v~~~p~~~~l~s~s~D~-----~i~lwd~~~~~~---- 283 (380)
T 3iz6_a 228 ------------TTVRLWDLRITSR-AVRTYHG--HEGDINSVKFFPDGQRFGTGSDDG-----TCRLFDMRTGHQ---- 283 (380)
T ss_dssp ------------SCEEEEETTTTCC-CCEEECC--CSSCCCEEEECTTSSEEEEECSSS-----CEEEEETTTTEE----
T ss_pred ------------CeEEEEECCCCCc-ceEEECC--cCCCeEEEEEecCCCeEEEEcCCC-----eEEEEECCCCcE----
Confidence 3588899864322 2223332 233456889999999987655433 377889876421
Q ss_pred ccccCCCCCcEEeeecc--------cceEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEecc--CCCCCceeEE
Q 004766 286 FKKRDGLLPFVKLIDGF--------DAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIP--EAERDVLESA 355 (732)
Q Consensus 286 ~~~~~~~~~~~~l~~~~--------~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~--~~~~~~l~~~ 355 (732)
...+.... ......|+|+|+.|+..+. ++.|..+|+.+++....+.. ......+..+
T Consensus 284 ---------~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~----dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l 350 (380)
T 3iz6_a 284 ---------LQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYS----NGDCYVWDTLLAEMVLNLGTLQNSHEGRISCL 350 (380)
T ss_dssp ---------EEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECT----TSCEEEEETTTCCEEEEECCSCSSCCCCCCEE
T ss_pred ---------EEEecccccccccccCceEEEEECCCCCEEEEEEC----CCCEEEEECCCCceEEEEecccCCCCCceEEE
Confidence 11111100 0112358999987765433 34688899877663333311 1223567889
Q ss_pred EEecCCEEEEEEecCCeeEEEEEeCCC
Q 004766 356 TAVNLNQMIVSYLSDVKYVLQIRDLKN 382 (732)
Q Consensus 356 ~~~~~~~l~~~~~~~g~~~l~~~d~~~ 382 (732)
.+++++.++++...|+ .|.+|++..
T Consensus 351 ~~s~dg~~l~sgs~D~--~i~iW~~~~ 375 (380)
T 3iz6_a 351 GLSSDGSALCTGSWDK--NLKIWAFSG 375 (380)
T ss_dssp EECSSSSEEEEECTTS--CEEEEECCS
T ss_pred EECCCCCEEEEeeCCC--CEEEEecCC
Confidence 9998777888888885 688888863
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.51 E-value=1.2e-05 Score=85.21 Aligned_cols=118 Identities=10% Similarity=-0.015 Sum_probs=74.8
Q ss_pred CCEEEEeEEECC-CCcEEEEEEeccCCceEEEEEEECCCCceecccccceeeeeEEEEeCCc---EEEEEEecCCCCCCC
Q 004766 130 GTAALIKVSVSE-DAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWFKFSSIAWTHDSK---GFFYSRYPAPKEGKD 205 (732)
Q Consensus 130 ~~~~~~~~~~SP-DG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~~~~~~~~~~WspDg~---~l~y~~~~~~~~~~~ 205 (732)
+...+..+.|+| ++++|+... .+ ..|++||+.+++.+...........+.|+|++. .|+....+
T Consensus 98 ~~~~v~~~~~~~~~~~~l~s~~-~d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 165 (408)
T 4a11_B 98 HRYSVETVQWYPHDTGMFTSSS-FD----KTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRG------- 165 (408)
T ss_dssp CSSCEEEEEECTTCTTCEEEEE-TT----SEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESS-------
T ss_pred CCCcEEEEEEccCCCcEEEEEe-CC----CeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCC-------
Confidence 344578899999 666666442 22 379999999988553322222246788888544 66665432
Q ss_pred CCCCCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCC
Q 004766 206 MDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSAL 279 (732)
Q Consensus 206 ~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~ 279 (732)
..|++|++.++... ..+.. +...+..+.|+|+++++++..... ..+.++|+.++
T Consensus 166 ------------~~v~~~d~~~~~~~--~~~~~--~~~~v~~~~~~~~~~~ll~~~~~d----g~i~i~d~~~~ 219 (408)
T 4a11_B 166 ------------PKVQLCDLKSGSCS--HILQG--HRQEILAVSWSPRYDYILATASAD----SRVKLWDVRRA 219 (408)
T ss_dssp ------------SSEEEEESSSSCCC--EEECC--CCSCEEEEEECSSCTTEEEEEETT----SCEEEEETTCS
T ss_pred ------------CeEEEEeCCCccee--eeecC--CCCcEEEEEECCCCCcEEEEEcCC----CcEEEEECCCC
Confidence 35888998765432 33332 234567899999999765555432 23778888653
|
| >1hpl_A Lipase; hydrolase(carboxylic esterase); 2.30A {Equus caballus} SCOP: b.12.1.2 c.69.1.19 | Back alignment and structure |
|---|
Probab=98.51 E-value=1.2e-07 Score=101.62 Aligned_cols=113 Identities=10% Similarity=-0.009 Sum_probs=77.9
Q ss_pred CCCccEEEEEcCCCCccCCCCcChhH-HHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCccHHHHHHHHHHHHHHcC
Q 004766 478 DGSHPCLLYGYGGFNISVTPSFSVSR-TILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAG 556 (732)
Q Consensus 478 ~~~~P~vv~~hG~~~~~~~~~~~~~~-~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~ 556 (732)
+...|+||++||..+.. ...|...+ ..+++..+|.|+++|.||+|.... ..+. ..-...-+++.+.+++|.++.
T Consensus 66 ~~~~p~vvliHG~~~s~-~~~w~~~l~~~ll~~~~~~VI~vD~~g~g~s~y--~~~~--~~~~~v~~~la~ll~~L~~~~ 140 (449)
T 1hpl_A 66 NTGRKTRFIIHGFIDKG-EESWLSTMCQNMFKVESVNCICVDWKSGSRTAY--SQAS--QNVRIVGAEVAYLVGVLQSSF 140 (449)
T ss_dssp CTTSEEEEEECCCCCTT-CTTHHHHHHHHHHHHCCEEEEEEECHHHHSSCH--HHHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEecCCCCC-CccHHHHHHHHHHhcCCeEEEEEeCCcccCCcc--HHHH--HHHHHHHHHHHHHHHHHHHhc
Confidence 45679999999976543 23454433 345554799999999999775431 1110 000112356667777776442
Q ss_pred CCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCc
Q 004766 557 YTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGV 595 (732)
Q Consensus 557 ~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~ 595 (732)
..+.+++.++|||+||.+++.++.++|++++.++...|.
T Consensus 141 g~~~~~v~LIGhSlGg~vA~~~a~~~p~~v~~iv~Ldpa 179 (449)
T 1hpl_A 141 DYSPSNVHIIGHSLGSHAAGEAGRRTNGAVGRITGLDPA 179 (449)
T ss_dssp CCCGGGEEEEEETHHHHHHHHHHHHTTTCSSEEEEESCB
T ss_pred CCCcccEEEEEECHhHHHHHHHHHhcchhcceeeccCcc
Confidence 246789999999999999999999999999999876654
|
| >3n2z_B Lysosomal Pro-X carboxypeptidase; alpha/beta hydrolase, PRCP, serine carboxypeptidase, hydrola; HET: NAG; 2.79A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.49 E-value=4.7e-07 Score=96.81 Aligned_cols=113 Identities=19% Similarity=0.094 Sum_probs=75.4
Q ss_pred CccEEEEEcCCCCccCCCC-cChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcc---ccc----CCccHHHHHHHHHHH
Q 004766 480 SHPCLLYGYGGFNISVTPS-FSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGG---ALA----KKQNCFDDFISASEY 551 (732)
Q Consensus 480 ~~P~vv~~hG~~~~~~~~~-~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~---~~~----~~~~~~~D~~~~~~~ 551 (732)
..|+ |+.|||.+...... .......+..+.|+.|++.|.||.|..... .... ... .-...++|+...+++
T Consensus 38 g~Pi-~l~~Ggeg~~~~~~~~~g~~~~lA~~~~~~Vi~~DhRg~G~S~p~-~~~~~~~~~~l~~lt~~q~~~Dl~~~~~~ 115 (446)
T 3n2z_B 38 GGSI-LFYTGNEGDIIWFCNNTGFMWDVAEELKAMLVFAEHRYYGESLPF-GDNSFKDSRHLNFLTSEQALADFAELIKH 115 (446)
T ss_dssp TCEE-EEEECCSSCHHHHHHHCHHHHHHHHHHTEEEEEECCTTSTTCCTT-GGGGGSCTTTSTTCSHHHHHHHHHHHHHH
T ss_pred CCCE-EEEeCCCCcchhhhhcccHHHHHHHHhCCcEEEEecCCCCCCCCC-CccccccchhhccCCHHHHHHHHHHHHHH
Confidence 3565 55589887532111 122234555556999999999998876321 1000 011 113457888888888
Q ss_pred HHHcC-CCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCC
Q 004766 552 LISAG-YTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVG 594 (732)
Q Consensus 552 l~~~~-~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p 594 (732)
|...- .....++.++||||||.++++++.++|+++.++|+.++
T Consensus 116 l~~~~~~~~~~p~il~GhS~GG~lA~~~~~~yP~~v~g~i~ssa 159 (446)
T 3n2z_B 116 LKRTIPGAENQPVIAIGGSYGGMLAAWFRMKYPHMVVGALAASA 159 (446)
T ss_dssp HHHHSTTGGGCCEEEEEETHHHHHHHHHHHHCTTTCSEEEEETC
T ss_pred HHHhcccCCCCCEEEEEeCHHHHHHHHHHHhhhccccEEEEecc
Confidence 87641 12335899999999999999999999999999988654
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=98.49 E-value=3.4e-05 Score=79.75 Aligned_cols=228 Identities=8% Similarity=-0.065 Sum_probs=135.3
Q ss_pred EEEEecc--CCceEEEEEEECCCCceeccccc-------ceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCCcc
Q 004766 147 AYALSYS--GSDWATIKLMRIEDQIVEADALS-------WFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLY 217 (732)
Q Consensus 147 a~~~~~~--G~e~~~i~v~dl~~g~~~~~~~~-------~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~~~ 217 (732)
+|+++.+ |++...|.++|.++++....... +....++++ +++.+|.+.. ..
T Consensus 4 ~~v~neg~~g~~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~--~~~~lyv~~~------------------~~ 63 (328)
T 3dsm_A 4 LFITNEGNFQYSNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVI--RDGIGWIVVN------------------NS 63 (328)
T ss_dssp EEEEECCCTTSCCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEE--ETTEEEEEEG------------------GG
T ss_pred EEEEecCCCCCCCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEE--ECCEEEEEEc------------------CC
Confidence 4666655 44456899999999986532110 001134554 5667777643 23
Q ss_pred cEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCCCCcEE
Q 004766 218 HEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVK 297 (732)
Q Consensus 218 ~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~ 297 (732)
..|.+++..+...... + .... ....+++++|| .|++.. .. ...|+++|++++.. ...
T Consensus 64 ~~v~viD~~t~~~~~~-i-~~~~---~p~~i~~~~~g-~lyv~~-~~---~~~v~~iD~~t~~~-------------~~~ 120 (328)
T 3dsm_A 64 HVIFAIDINTFKEVGR-I-TGFT---SPRYIHFLSDE-KAYVTQ-IW---DYRIFIINPKTYEI-------------TGY 120 (328)
T ss_dssp TEEEEEETTTCCEEEE-E-ECCS---SEEEEEEEETT-EEEEEE-BS---CSEEEEEETTTTEE-------------EEE
T ss_pred CEEEEEECcccEEEEE-c-CCCC---CCcEEEEeCCC-eEEEEE-CC---CCeEEEEECCCCeE-------------EEE
Confidence 4688899887643221 2 2212 23567889999 554443 12 35689999887420 112
Q ss_pred eeecc------cceEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecCCEEEEEEecCC
Q 004766 298 LIDGF------DAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDV 371 (732)
Q Consensus 298 l~~~~------~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~~l~~~~~~~g 371 (732)
+..+. ......+ +++++|+... + ....|.++|+++++ ....++.. .....+.+++++++++....+.
T Consensus 121 i~~g~~~~~~~~p~~i~~--~~~~lyv~~~-~-~~~~v~viD~~t~~-~~~~i~~g--~~p~~i~~~~dG~l~v~~~~~~ 193 (328)
T 3dsm_A 121 IECPDMDMESGSTEQMVQ--YGKYVYVNCW-S-YQNRILKIDTETDK-VVDELTIG--IQPTSLVMDKYNKMWTITDGGY 193 (328)
T ss_dssp EECTTCCTTTCBCCCEEE--ETTEEEEEEC-T-TCCEEEEEETTTTE-EEEEEECS--SCBCCCEECTTSEEEEEBCCBC
T ss_pred EEcCCccccCCCcceEEE--ECCEEEEEcC-C-CCCEEEEEECCCCe-EEEEEEcC--CCccceEEcCCCCEEEEECCCc
Confidence 22122 1111123 5778876532 1 13479999998876 22223322 2234567777678777654330
Q ss_pred --------eeEEEEEeCCCCceeeecccccc-eeeEeecccCCcEEEEEEecCCCCceEEEEECCCCC
Q 004766 372 --------KYVLQIRDLKNGSLLHQLPIEIG-SVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 430 (732)
Q Consensus 372 --------~~~l~~~d~~~g~~~~~l~~~~g-~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~~ 430 (732)
...|+++|.++++..+.+..+.+ ....+.++++++.++++-+ .++.+|+.+++
T Consensus 194 ~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~------~v~~~d~~t~~ 255 (328)
T 3dsm_A 194 EGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN------DIWRMPVEADR 255 (328)
T ss_dssp TTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS------SEEEEETTCSS
T ss_pred cCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc------EEEEEECCCCc
Confidence 25899999988887666766532 4567888999988876532 79999998875
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=98.49 E-value=3.1e-05 Score=79.16 Aligned_cols=247 Identities=8% Similarity=0.051 Sum_probs=136.7
Q ss_pred EeEEECCCCcEEEEEEe---ccCCceEEEEEEECCCCceecccc-----cceeeeeEEEEeCCcEEEEEEecCCCCCCCC
Q 004766 135 IKVSVSEDAKYLAYALS---YSGSDWATIKLMRIEDQIVEADAL-----SWFKFSSIAWTHDSKGFFYSRYPAPKEGKDM 206 (732)
Q Consensus 135 ~~~~~SPDG~~la~~~~---~~G~e~~~i~v~dl~~g~~~~~~~-----~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~ 206 (732)
.++.|+|||+.++ +.. ..+.....|+++|..+|+...... ......++++++|+..|+++..
T Consensus 21 ~~~~~~~~g~l~~-~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~--------- 90 (314)
T 1pjx_A 21 EGPVFDKNGDFYI-VAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM--------- 90 (314)
T ss_dssp EEEEECTTSCEEE-EETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET---------
T ss_pred cCceECCCCCEEE-EEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEEC---------
Confidence 4788999997443 310 001112379999988887543221 1112467899999334665531
Q ss_pred CCCCcccCCcccEEEEEECCCCCCCCeEE-EecCCC--CeeEEEeEEecCCcEEEEEEecCC-----------cceEEEE
Q 004766 207 DAGTETDSNLYHEFYYHFLGTKQSEDILC-WKDPEH--PKYIFSGHVTEDGQYLVMCIEENC-----------DPVNKVY 272 (732)
Q Consensus 207 ~~~~~~~~~~~~~v~~~~lgt~~~~~~~v-~~~~~~--~~~~~~~~~SpDg~~l~~~~~~~~-----------~~~~~l~ 272 (732)
...|++++.. +.. ..+ ...... ......+++++||+..+ ...... .....|+
T Consensus 91 ----------~~~l~~~d~~-g~~--~~~~~~~~~~~~~~~~~~i~~d~~g~l~v-~~~~~~~~~~~~~~~~~~~~~~l~ 156 (314)
T 1pjx_A 91 ----------RLGLLVVQTD-GTF--EEIAKKDSEGRRMQGCNDCAFDYEGNLWI-TAPAGEVAPADYTRSMQEKFGSIY 156 (314)
T ss_dssp ----------TTEEEEEETT-SCE--EECCSBCTTSCBCBCCCEEEECTTSCEEE-EECBCBCTTSCCCBTTSSSCEEEE
T ss_pred ----------CCCEEEEeCC-CCE--EEEEeccCCCccccCCcCEEECCCCCEEE-EecCcccccccccccccCCCCeEE
Confidence 1257888765 321 111 111110 11234788999997543 332110 0125788
Q ss_pred EEeCCCCCCCcccccccCCCCCcEEeeecccc-eEEEEE----ecCCeEEEEeCCCCCCceEEEEeCC-CCC--CceEe-
Q 004766 273 YCDLSALPEGLEGFKKRDGLLPFVKLIDGFDA-QYEVIA----NDDTVFTFLTNKDAPKYKIIRVDLK-EPN--DWFEV- 343 (732)
Q Consensus 273 ~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~s----~dg~~l~~~s~~~~~~~~l~~~d~~-~~~--~~~~l- 343 (732)
.++.++ . ...+...... .-..++ ++|+.+|+.... ..+|++++++ ++. ....+
T Consensus 157 ~~~~~g-~--------------~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~---~~~i~~~~~~~~g~~~~~~~~~ 218 (314)
T 1pjx_A 157 CFTTDG-Q--------------MIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETP---TKKLWSYDIKGPAKIENKKVWG 218 (314)
T ss_dssp EECTTS-C--------------EEEEEEEESSEEEEEEEECTTSCEEEEEEEETT---TTEEEEEEEEETTEEEEEEEEE
T ss_pred EECCCC-C--------------EEEeccCCCCcceEEEecccCCCCCEEEEEECC---CCeEEEEECCCCCccccceEEE
Confidence 888652 2 2222222111 122478 888777765432 3468888865 232 00111
Q ss_pred -ccCCCCCceeEEEEecCCEEEEEEecCCeeEEEEEeCCCCceeeecccccceeeEeecccCCcEEEEEEecCCCCceEE
Q 004766 344 -IPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVY 422 (732)
Q Consensus 344 -~~~~~~~~l~~~~~~~~~~l~~~~~~~g~~~l~~~d~~~g~~~~~l~~~~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y 422 (732)
++........++.+.+++.+++....+ ..|.+++.++|+.+..+..+...+..+.++++++.|+++... ...++
T Consensus 219 ~~~~~~~~~p~~i~~d~~G~l~v~~~~~--~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~---~~~l~ 293 (314)
T 1pjx_A 219 HIPGTHEGGADGMDFDEDNNLLVANWGS--SHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHE---NNAVW 293 (314)
T ss_dssp ECCCCSSCEEEEEEEBTTCCEEEEEETT--TEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETT---TTEEE
T ss_pred ECCCCCCCCCCceEECCCCCEEEEEcCC--CEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCC---CCeEE
Confidence 111100345667777767787776544 378999987677655666554556677778898877766433 35789
Q ss_pred EEECCC
Q 004766 423 QCNLKT 428 (732)
Q Consensus 423 ~~d~~~ 428 (732)
++++..
T Consensus 294 ~~~~~~ 299 (314)
T 1pjx_A 294 KFEWQR 299 (314)
T ss_dssp EEECSS
T ss_pred EEeCCC
Confidence 998764
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=98.48 E-value=6.3e-05 Score=81.05 Aligned_cols=228 Identities=13% Similarity=0.096 Sum_probs=135.2
Q ss_pred EECCCCcEEEEEEeccCCceEEEEEEECCCCceecccc-cceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCCc
Q 004766 138 SVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADAL-SWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNL 216 (732)
Q Consensus 138 ~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~-~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~~ 216 (732)
.+++||++|+.... ...|++||+.+++.+.... .......++| |++.|+....+
T Consensus 138 ~~~~d~~~l~~g~~-----dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~d------------------ 192 (435)
T 1p22_A 138 CLQYDDQKIVSGLR-----DNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSD------------------ 192 (435)
T ss_dssp EEECCSSEEEEEES-----SSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETT------------------
T ss_pred EEEECCCEEEEEeC-----CCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCC------------------
Confidence 46679999886642 2479999999988543221 1112356666 88877776533
Q ss_pred ccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCCCCcE
Q 004766 217 YHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFV 296 (732)
Q Consensus 217 ~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~ 296 (732)
..|.+|++.++.. +..+. .+...+..+.++ +..++..+.+ ..|.++|+.++. .....
T Consensus 193 -g~i~vwd~~~~~~--~~~~~--~h~~~v~~l~~~--~~~l~s~s~d-----g~i~vwd~~~~~-----------~~~~~ 249 (435)
T 1p22_A 193 -STVRVWDVNTGEM--LNTLI--HHCEAVLHLRFN--NGMMVTCSKD-----RSIAVWDMASPT-----------DITLR 249 (435)
T ss_dssp -SCEEEEESSSCCE--EEEEC--CCCSCEEEEECC--TTEEEEEETT-----SCEEEEECSSSS-----------CCEEE
T ss_pred -CeEEEEECCCCcE--EEEEc--CCCCcEEEEEEc--CCEEEEeeCC-----CcEEEEeCCCCC-----------Cceee
Confidence 3588999877642 12222 233345567775 4465554433 237888887642 11111
Q ss_pred EeeecccceEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecCCEEEEEEecCCeeEEE
Q 004766 297 KLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQ 376 (732)
Q Consensus 297 ~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~~l~~~~~~~g~~~l~ 376 (732)
....+....+..+..+++.++..+. +..|..+|+.++.....+..+. ..+..+.+.+ .++++...++ .|.
T Consensus 250 ~~~~~~~~~v~~~~~~~~~l~s~~~----dg~i~vwd~~~~~~~~~~~~~~--~~v~~~~~~~--~~l~~g~~dg--~i~ 319 (435)
T 1p22_A 250 RVLVGHRAAVNVVDFDDKYIVSASG----DRTIKVWNTSTCEFVRTLNGHK--RGIACLQYRD--RLVVSGSSDN--TIR 319 (435)
T ss_dssp EEECCCSSCEEEEEEETTEEEEEET----TSEEEEEETTTCCEEEEEECCS--SCEEEEEEET--TEEEEEETTS--CEE
T ss_pred eEecCCCCcEEEEEeCCCEEEEEeC----CCeEEEEECCcCcEEEEEcCCC--CcEEEEEeCC--CEEEEEeCCC--eEE
Confidence 2222233333344557887776544 3468899998876444444343 4566677643 4555666664 689
Q ss_pred EEeCCCCceeeecccccceeeEeecccCCcEEEEEEecCCCCceEEEEECCCC
Q 004766 377 IRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTE 429 (732)
Q Consensus 377 ~~d~~~g~~~~~l~~~~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~ 429 (732)
+||+.+|+.+..+..+...+..+.+ ++..++ +.+. -..+..+|+.++
T Consensus 320 iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~-sg~~---dg~i~vwd~~~~ 366 (435)
T 1p22_A 320 LWDIECGACLRVLEGHEELVRCIRF--DNKRIV-SGAY---DGKIKVWDLVAA 366 (435)
T ss_dssp EEETTTCCEEEEECCCSSCEEEEEC--CSSEEE-EEET---TSCEEEEEHHHH
T ss_pred EEECCCCCEEEEEeCCcCcEEEEEe--cCCEEE-EEeC---CCcEEEEECCCC
Confidence 9999988876677655566766665 566544 3332 256888887543
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=98.45 E-value=3.5e-05 Score=78.36 Aligned_cols=206 Identities=11% Similarity=0.024 Sum_probs=112.8
Q ss_pred CEEEEeEEECCC--CcEEEEEEeccCCceEEEEEEECCCCceec---ccccceeeeeEEEEeC--CcEEEEEEecCCCCC
Q 004766 131 TAALIKVSVSED--AKYLAYALSYSGSDWATIKLMRIEDQIVEA---DALSWFKFSSIAWTHD--SKGFFYSRYPAPKEG 203 (732)
Q Consensus 131 ~~~~~~~~~SPD--G~~la~~~~~~G~e~~~i~v~dl~~g~~~~---~~~~~~~~~~~~WspD--g~~l~y~~~~~~~~~ 203 (732)
...+..+.|||+ |++||-.. ...+|++||+++++... ..........++|+|| |+.|+....+
T Consensus 53 ~~~V~~v~~s~~~~g~~l~s~s-----~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d----- 122 (297)
T 2pm7_B 53 EGPVWRVDWAHPKFGTILASCS-----YDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSD----- 122 (297)
T ss_dssp SSCEEEEEECCGGGCSEEEEEE-----TTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETT-----
T ss_pred cCCeEEEEecCCCcCCEEEEEc-----CCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECC-----
Confidence 345778899874 88877543 22489999999875211 1111223478999998 7777766533
Q ss_pred CCCCCCCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecC-------------CcEEEEEEecCCcceEE
Q 004766 204 KDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTED-------------GQYLVMCIEENCDPVNK 270 (732)
Q Consensus 204 ~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpD-------------g~~l~~~~~~~~~~~~~ 270 (732)
..|.+|++.++.......+.. +...+..++|+|+ +++|+..+.++ .
T Consensus 123 --------------~~v~~wd~~~~~~~~~~~~~~--h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~-----~ 181 (297)
T 2pm7_B 123 --------------GKVSVVEFKENGTTSPIIIDA--HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADN-----L 181 (297)
T ss_dssp --------------SEEEEEEBCSSSCBCCEEEEC--CSSCEEEEEECCCC------------CCEEEEEETTS-----C
T ss_pred --------------CcEEEEEecCCCceeeeeeec--ccCccceEeecCCcccccccCCCCCCcceEEEEcCCC-----c
Confidence 368888887653222233332 2234567899997 45666554332 2
Q ss_pred EEEEeCCCCCCCcccccccCCCCCcEEeeecccceE-EEEEecC--CeEEEEeCCCCCCceEEEEeCCCCC-Cce-Eecc
Q 004766 271 VYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQY-EVIANDD--TVFTFLTNKDAPKYKIIRVDLKEPN-DWF-EVIP 345 (732)
Q Consensus 271 l~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~s~dg--~~l~~~s~~~~~~~~l~~~d~~~~~-~~~-~l~~ 345 (732)
|.++|+.++... ......+........ ..|+|++ ..+++....+ ..|..+|+.+.. .+. .++.
T Consensus 182 v~lwd~~~~~~~---------~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D---~~v~iWd~~~~~~~~~~~~~~ 249 (297)
T 2pm7_B 182 VKIWKYNSDAQT---------YVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQD---RTCIIWTQDNEQGPWKKTLLK 249 (297)
T ss_dssp EEEEEEETTTTE---------EEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETT---SCEEEEEESSTTSCCEEEESS
T ss_pred EEEEEEcCCCce---------EEEEEEecCCCCceEEEEECCCCCCceEEEEEECC---CcEEEEEeCCCCCccceeeee
Confidence 666676542100 000112221111112 2488985 3333333332 246666665532 122 2331
Q ss_pred -CCCCCceeEEEEecCCEEEEEEecCCeeEEEEEeCC
Q 004766 346 -EAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLK 381 (732)
Q Consensus 346 -~~~~~~l~~~~~~~~~~l~~~~~~~g~~~l~~~d~~ 381 (732)
......+..+.|++++.++++...++ .|.+|+..
T Consensus 250 ~~~~~~~v~~~~~s~~g~~las~~~D~--~v~lw~~~ 284 (297)
T 2pm7_B 250 EEKFPDVLWRASWSLSGNVLALSGGDN--KVTLWKEN 284 (297)
T ss_dssp SSCCSSCEEEEEECSSSCCEEEEETTS--CEEEEEEC
T ss_pred cccCCCcEEEEEECCCCCEEEEEcCCC--cEEEEEEC
Confidence 22235677889998777777777776 45566543
|
| >1rp1_A Pancreatic lipase related protein 1; hydrolase, lipid degradation; HET: NAG; 2.10A {Canis lupus familiaris} SCOP: b.12.1.2 c.69.1.19 PDB: 2ppl_A | Back alignment and structure |
|---|
Probab=98.43 E-value=3.5e-07 Score=98.16 Aligned_cols=112 Identities=9% Similarity=0.060 Sum_probs=75.3
Q ss_pred CCCccEEEEEcCCCCccCCCCcChhH-HHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCccHHHHHHHHHHHHHHcC
Q 004766 478 DGSHPCLLYGYGGFNISVTPSFSVSR-TILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAG 556 (732)
Q Consensus 478 ~~~~P~vv~~hG~~~~~~~~~~~~~~-~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~ 556 (732)
+...|+||++||..+.. ...|...+ ..++...||.|+++|+||+|... +..+. ..-....+|+.+.+++|.++.
T Consensus 67 ~~~~p~vvliHG~~~s~-~~~w~~~l~~~ll~~~~~~VI~vD~~g~g~s~--y~~~~--~~~~~~a~~l~~ll~~L~~~~ 141 (450)
T 1rp1_A 67 QTDKKTRFIIHGFIDKG-EENWLLDMCKNMFKVEEVNCICVDWKKGSQTS--YTQAA--NNVRVVGAQVAQMLSMLSANY 141 (450)
T ss_dssp CTTSEEEEEECCCCCTT-CTTHHHHHHHHHTTTCCEEEEEEECHHHHSSC--HHHHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEccCCCCC-CcchHHHHHHHHHhcCCeEEEEEeCccccCCc--chHHH--HHHHHHHHHHHHHHHHHHHhc
Confidence 35679999999976543 22444433 34455348999999999976432 11110 001122356667777776432
Q ss_pred CCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCc
Q 004766 557 YTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGV 595 (732)
Q Consensus 557 ~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~ 595 (732)
..+.+++.++|||+||.+++.++.++|+ ++.++...|.
T Consensus 142 g~~~~~v~LVGhSlGg~vA~~~a~~~p~-v~~iv~Ldpa 179 (450)
T 1rp1_A 142 SYSPSQVQLIGHSLGAHVAGEAGSRTPG-LGRITGLDPV 179 (450)
T ss_dssp CCCGGGEEEEEETHHHHHHHHHHHTSTT-CCEEEEESCC
T ss_pred CCChhhEEEEEECHhHHHHHHHHHhcCC-cccccccCcc
Confidence 2457899999999999999999999999 8888866554
|
| >2dst_A Hypothetical protein TTHA1544; conserved hypothetical protein, structural genomics, NPPSFA; 2.00A {Thermus thermophilus} SCOP: c.69.1.39 | Back alignment and structure |
|---|
Probab=98.43 E-value=9.8e-07 Score=77.80 Aligned_cols=97 Identities=11% Similarity=0.002 Sum_probs=64.9
Q ss_pred ccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccC
Q 004766 458 SKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAK 537 (732)
Q Consensus 458 s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~ 537 (732)
..+| .++.+... ++.|.||++| +.. ..|... |+ ++|.|+.+|+||.|..... .
T Consensus 8 ~~~g-~~~~~~~~--------g~~~~vv~~H-~~~----~~~~~~----l~-~~~~v~~~d~~G~G~s~~~--------~ 60 (131)
T 2dst_A 8 HLYG-LNLVFDRV--------GKGPPVLLVA-EEA----SRWPEA----LP-EGYAFYLLDLPGYGRTEGP--------R 60 (131)
T ss_dssp EETT-EEEEEEEE--------CCSSEEEEES-SSG----GGCCSC----CC-TTSEEEEECCTTSTTCCCC--------C
T ss_pred EECC-EEEEEEEc--------CCCCeEEEEc-CCH----HHHHHH----Hh-CCcEEEEECCCCCCCCCCC--------C
Confidence 3478 77754422 2357899999 211 123322 55 6699999999998754211 1
Q ss_pred CccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCe
Q 004766 538 KQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDL 585 (732)
Q Consensus 538 ~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~ 585 (732)
. . ++++.+.+..+++. .+.+++.++|+|+||.++..++.++|.+
T Consensus 61 ~-~-~~~~~~~~~~~~~~--~~~~~~~lvG~S~Gg~~a~~~a~~~p~l 104 (131)
T 2dst_A 61 M-A-PEELAHFVAGFAVM--MNLGAPWVLLRGLGLALGPHLEALGLRA 104 (131)
T ss_dssp C-C-HHHHHHHHHHHHHH--TTCCSCEEEECGGGGGGHHHHHHTTCCE
T ss_pred C-C-HHHHHHHHHHHHHH--cCCCccEEEEEChHHHHHHHHHhcCCcE
Confidence 1 1 66666666655554 2446899999999999999999999964
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=98.43 E-value=1e-05 Score=83.52 Aligned_cols=107 Identities=9% Similarity=-0.060 Sum_probs=66.6
Q ss_pred EEEEeEEECC--CCcEEEEEEeccCCceEEEEEEECCCCce---------ec-ccccceeeeeEEEEeC--CcEEEEEEe
Q 004766 132 AALIKVSVSE--DAKYLAYALSYSGSDWATIKLMRIEDQIV---------EA-DALSWFKFSSIAWTHD--SKGFFYSRY 197 (732)
Q Consensus 132 ~~~~~~~~SP--DG~~la~~~~~~G~e~~~i~v~dl~~g~~---------~~-~~~~~~~~~~~~WspD--g~~l~y~~~ 197 (732)
..+..+.|+| ||++|+.... + ..|++||+.+++. +. ..........++|+|+ ++.|+....
T Consensus 58 ~~v~~~~~~~~~d~~~l~s~~~-d----g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~ 132 (351)
T 3f3f_A 58 SSIVAIDWASPEYGRIIASASY-D----KTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGN 132 (351)
T ss_dssp SCEEEEEECCGGGCSEEEEEET-T----SCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEET
T ss_pred CcEEEEEEcCCCCCCEEEEEcC-C----CeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecC
Confidence 3477899999 6998886642 2 3799999988731 11 1111223578999999 988887653
Q ss_pred cCCCCCCCCCCCCcccCCcccEEEEEECCCCCCCCeEEEec---------CCCCeeEEEeEEecC---CcEEEEEEe
Q 004766 198 PAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKD---------PEHPKYIFSGHVTED---GQYLVMCIE 262 (732)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~---------~~~~~~~~~~~~SpD---g~~l~~~~~ 262 (732)
+ ..|++|++.++......-... .........+.|+|+ ++.++....
T Consensus 133 d-------------------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 190 (351)
T 3f3f_A 133 D-------------------GILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSAL 190 (351)
T ss_dssp T-------------------CEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEET
T ss_pred C-------------------CcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecC
Confidence 3 368888887654322111100 011223457889997 887776653
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.43 E-value=0.00015 Score=72.27 Aligned_cols=207 Identities=8% Similarity=-0.036 Sum_probs=125.4
Q ss_pred EEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecccccc-eeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcc
Q 004766 134 LIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSW-FKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTET 212 (732)
Q Consensus 134 ~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~~~-~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~ 212 (732)
..++.|+|++++|.++ +... ..|++++++++......... ....+++++|+++.||++..
T Consensus 38 ~~gi~~d~~~~~ly~~-d~~~---~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~--------------- 98 (267)
T 1npe_A 38 IIGLAFDCVDKVVYWT-DISE---PSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDS--------------- 98 (267)
T ss_dssp EEEEEEETTTTEEEEE-ETTT---TEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEET---------------
T ss_pred EEEEEEecCCCEEEEE-ECCC---CEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEEC---------------
Confidence 4588999998887665 3332 37999999876532211111 13478999999888887732
Q ss_pred cCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCC
Q 004766 213 DSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGL 292 (732)
Q Consensus 213 ~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~ 292 (732)
...+|++.++.+.. ...+.... .....+++++|++.+|++...... ...|+.+++++..
T Consensus 99 ---~~~~I~~~~~~g~~--~~~~~~~~--~~~P~~i~vd~~~g~lyv~~~~~~--~~~I~~~~~dg~~------------ 157 (267)
T 1npe_A 99 ---QLDRIEVAKMDGTQ--RRVLFDTG--LVNPRGIVTDPVRGNLYWTDWNRD--NPKIETSHMDGTN------------ 157 (267)
T ss_dssp ---TTTEEEEEETTSCS--CEEEECSS--CSSEEEEEEETTTTEEEEEECCSS--SCEEEEEETTSCC------------
T ss_pred ---CCCEEEEEEcCCCC--EEEEEECC--CCCccEEEEeeCCCEEEEEECCCC--CcEEEEEecCCCC------------
Confidence 23468888876432 22333221 123357899999888877653211 3568888876521
Q ss_pred CCcEEeee-ccc-ceEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecCCEEEEEEecC
Q 004766 293 LPFVKLID-GFD-AQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSD 370 (732)
Q Consensus 293 ~~~~~l~~-~~~-~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~~l~~~~~~~ 370 (732)
.+.+.. +.. ..-..++++++.||+.... ..+|+++++++.. ...++... ..-.++.... +.+|++...+
T Consensus 158 --~~~~~~~~~~~P~gia~d~~~~~lyv~d~~---~~~I~~~~~~g~~-~~~~~~~~--~~P~gi~~d~-~~lyva~~~~ 228 (267)
T 1npe_A 158 --RRILAQDNLGLPNGLTFDAFSSQLCWVDAG---THRAECLNPAQPG-RRKVLEGL--QYPFAVTSYG-KNLYYTDWKT 228 (267)
T ss_dssp --CEEEECTTCSCEEEEEEETTTTEEEEEETT---TTEEEEEETTEEE-EEEEEECC--CSEEEEEEET-TEEEEEETTT
T ss_pred --cEEEEECCCCCCcEEEEcCCCCEEEEEECC---CCEEEEEecCCCc-eEEEecCC--CCceEEEEeC-CEEEEEECCC
Confidence 122221 111 1122578888888875443 3579999987654 33343322 2234566554 7888876554
Q ss_pred CeeEEEEEeCCCCceeeeccc
Q 004766 371 VKYVLQIRDLKNGSLLHQLPI 391 (732)
Q Consensus 371 g~~~l~~~d~~~g~~~~~l~~ 391 (732)
.+|+++|.++|+.++.|..
T Consensus 229 --~~v~~~d~~~g~~~~~i~~ 247 (267)
T 1npe_A 229 --NSVIAMDLAISKEMDTFHP 247 (267)
T ss_dssp --TEEEEEETTTTEEEEEECC
T ss_pred --CeEEEEeCCCCCceEEEcc
Confidence 4799999988887666653
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=98.43 E-value=2.1e-05 Score=82.28 Aligned_cols=260 Identities=7% Similarity=-0.097 Sum_probs=136.9
Q ss_pred CCcEEEEEEeccCCceE-EEEEEECCCCceecccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCCcccEE
Q 004766 142 DAKYLAYALSYSGSDWA-TIKLMRIEDQIVEADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEF 220 (732)
Q Consensus 142 DG~~la~~~~~~G~e~~-~i~v~dl~~g~~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~~~~~v 220 (732)
+..+ +|+.+.+++.-. ++.|+|+++++.+.....+.. .++++||||+.+|.+...... + ....+...|
T Consensus 30 ~~~~-~yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG~~-P~i~~spDg~~lyVan~~~~r-------~--~~G~~~~~V 98 (368)
T 1mda_H 30 ISRR-SHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFL-SLAVAGHSGSDFALASTSFAR-------S--AKGKRTDYV 98 (368)
T ss_dssp CTTE-EEEEECTTTCSSEEEEEEETTTTEEEEEEEECTT-CEEEECTTSSCEEEEEEEETT-------T--TSSSEEEEE
T ss_pred CCCe-EEEECCccCCccceEEEEECCCCeEEEEEeCCCC-CceEECCCCCEEEEEcccccc-------c--ccCCCCCEE
Confidence 3344 677766543112 899999999997643322222 379999999999887532100 0 001234678
Q ss_pred EEEECCCCCCCCeEEEecC------CCCeeEEEeEEecCCcEEEEEEecCCcceEEEEE--EeCCC------CCCCcccc
Q 004766 221 YYHFLGTKQSEDILCWKDP------EHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYY--CDLSA------LPEGLEGF 286 (732)
Q Consensus 221 ~~~~lgt~~~~~~~v~~~~------~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~--~d~~~------~~~~~~~~ 286 (732)
..+|+.+.+....+..... ..+ ..+.+||||+++++..... .+.+.+ +|+.+ +.+. .+
T Consensus 99 sviD~~T~~vv~~I~v~~~~~~~~g~~P---~~ia~SpDGk~lyVan~~~---~~~v~V~~iD~~tv~~i~v~~~~--~~ 170 (368)
T 1mda_H 99 EVFDPVTFLPIADIELPDAPRFSVGPRV---HIIGNCASSACLLFFLFGS---SAAAGLSVPGASDDQLTKSASCF--HI 170 (368)
T ss_dssp EEECTTTCCEEEEEEETTSCSCCBSCCT---TSEEECTTSSCEEEEECSS---SCEEEEEETTTEEEEEEECSSCC--CC
T ss_pred EEEECCCCCEEEEEECCCccccccCCCc---ceEEEcCCCCEEEEEccCC---CCeEEEEEEchhhceEEECCCce--EE
Confidence 8889887654322222100 112 2578999999987764321 133555 55533 0000 00
Q ss_pred cccC--------CCCCcEEeeecc----cce-------------EEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCce
Q 004766 287 KKRD--------GLLPFVKLIDGF----DAQ-------------YEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWF 341 (732)
Q Consensus 287 ~~~~--------~~~~~~~l~~~~----~~~-------------~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~ 341 (732)
.+++ ..-.+..+.... +.. .+..+++++.+++.+. ..++.+|+.+.. .
T Consensus 171 ~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~~~~~~~~~~~vs~-----~~V~viD~~~~~--~ 243 (368)
T 1mda_H 171 HPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVA-----SSILQGDIPAAG--A 243 (368)
T ss_dssp EEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBS-----SCCEEEECCSSC--C
T ss_pred ccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCccccccCCEEEEEcC-----CEEEEEECCCCc--c
Confidence 0000 000000000000 000 0001455566666554 357778876543 1
Q ss_pred EeccCC---------CCC---ceeEEEEecC-CEEEEEEecC-C-----eeEEEEEeCCCCceeeecccccceeeEeecc
Q 004766 342 EVIPEA---------ERD---VLESATAVNL-NQMIVSYLSD-V-----KYVLQIRDLKNGSLLHQLPIEIGSVNAISAR 402 (732)
Q Consensus 342 ~l~~~~---------~~~---~l~~~~~~~~-~~l~~~~~~~-g-----~~~l~~~d~~~g~~~~~l~~~~g~v~~~~~s 402 (732)
.++..- ... ....+.++++ +++|+..... + ...+.++|+++++.+.+|+.+. ....+.++
T Consensus 244 ~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s 322 (368)
T 1mda_H 244 TMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAA 322 (368)
T ss_dssp EEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEEC
T ss_pred eEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEEC
Confidence 111100 000 0111556765 6677765523 3 2345699999888878887654 34577889
Q ss_pred cCCcEEEEEEecCCCCceEEEEECCCCC
Q 004766 403 REDSVVFISFTSFLIPGIVYQCNLKTET 430 (732)
Q Consensus 403 ~d~~~l~~~~ss~~~p~~~y~~d~~~~~ 430 (732)
+|++.++++... ....+..+|+.+++
T Consensus 323 ~Dg~~l~va~~~--~~~~VsVID~~t~k 348 (368)
T 1mda_H 323 QDGASDNYANSA--GTEVLDIYDAASDQ 348 (368)
T ss_dssp CSSSCEEEEEET--TTTEEEEEESSSCE
T ss_pred CCCCEEEEEccC--CCCeEEEEECCCCc
Confidence 999888776551 13689999998874
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=0.00022 Score=73.55 Aligned_cols=247 Identities=9% Similarity=0.050 Sum_probs=135.8
Q ss_pred EEeEEECCCCcEEEEEEeccCCc---------------------eEEEEEEECCCCceecccccc--eeeeeEEEEeCCc
Q 004766 134 LIKVSVSEDAKYLAYALSYSGSD---------------------WATIKLMRIEDQIVEADALSW--FKFSSIAWTHDSK 190 (732)
Q Consensus 134 ~~~~~~SPDG~~la~~~~~~G~e---------------------~~~i~v~dl~~g~~~~~~~~~--~~~~~~~WspDg~ 190 (732)
+.+++++|||+.++.. ..+.. ..+|+++|.++|+.+...... ....+++++|||+
T Consensus 26 v~~va~d~~G~l~v~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~ 103 (329)
T 3fvz_A 26 VSGVALDSKNNLVIFH--RGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGN 103 (329)
T ss_dssp EEEEEECTTCCEEEEE--CTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSC
T ss_pred ceEEEECCCCCEEEEe--CCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCCC
Confidence 5688999999866432 22210 026999999988865322111 1236789999998
Q ss_pred EEEEEEecCCCCCCCCCCCCcccCCcccEEEEEECCCCCCCCeEEEec-------CCCCeeEEEeEEecCCcEEEEEEec
Q 004766 191 GFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKD-------PEHPKYIFSGHVTEDGQYLVMCIEE 263 (732)
Q Consensus 191 ~l~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~-------~~~~~~~~~~~~SpDg~~l~~~~~~ 263 (732)
|+++. ....+|++++..+... .+..+.. ........+++++|++..|++....
T Consensus 104 -l~v~d------------------~~~~~v~~~~~~g~~~-~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~ 163 (329)
T 3fvz_A 104 -YWVTD------------------VALHQVFKLDPHSKEG-PLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGY 163 (329)
T ss_dssp -EEEEE------------------TTTTEEEEECTTCSSC-CSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECS
T ss_pred -EEEEE------------------CCCCEEEEEeCCCCeE-EEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCC
Confidence 65552 1234688888754321 1122211 1111234688999944444444321
Q ss_pred CCcceEEEEEEeCCCCCCCcccccccCCCCCcEEeee-c---------cc-ceEEEEEecCCeEEEEeCCCCCCceEEEE
Q 004766 264 NCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLID-G---------FD-AQYEVIANDDTVFTFLTNKDAPKYKIIRV 332 (732)
Q Consensus 264 ~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l~~-~---------~~-~~~~~~s~dg~~l~~~s~~~~~~~~l~~~ 332 (732)
. ...|++++.++.. ...+.. + .. ..-..++++++.||+.... +.+|.++
T Consensus 164 -~--~~~I~~~~~~g~~--------------~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~---~~~I~~~ 223 (329)
T 3fvz_A 164 -C--NSRIVQFSPSGKF--------------VTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRE---NGRIQCF 223 (329)
T ss_dssp -S--CCEEEEECTTSCE--------------EEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETT---TTEEEEE
T ss_pred -C--CCeEEEEcCCCCE--------------EEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECC---CCEEEEE
Confidence 1 3568888854411 111110 0 00 1112477886778765432 4579999
Q ss_pred eCCCCCCceEeccCCCCCceeEEEEecCCEEEEEEecC-----CeeEEEEEeCCCCceeeeccc---ccceeeEeecccC
Q 004766 333 DLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSD-----VKYVLQIRDLKNGSLLHQLPI---EIGSVNAISARRE 404 (732)
Q Consensus 333 d~~~~~~~~~l~~~~~~~~l~~~~~~~~~~l~~~~~~~-----g~~~l~~~d~~~g~~~~~l~~---~~g~v~~~~~s~d 404 (732)
+.++++....+........+..+.+.+ +.++...... ....+++++..+|+.+..+.. .......++++++
T Consensus 224 ~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~d 302 (329)
T 3fvz_A 224 KTDTKEFVREIKHASFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASED 302 (329)
T ss_dssp ETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTT
T ss_pred ECCCCcEEEEEeccccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCC
Confidence 988665333332222223455677777 5555443221 124789999888887665531 2234557778888
Q ss_pred CcEEEEEEecCCCCceEEEEECC
Q 004766 405 DSVVFISFTSFLIPGIVYQCNLK 427 (732)
Q Consensus 405 ~~~l~~~~ss~~~p~~~y~~d~~ 427 (732)
| .++++-.. ..+++++++.
T Consensus 303 G-~lyvad~~---~~~I~~~~~~ 321 (329)
T 3fvz_A 303 G-TVYIGDAH---TNTVWKFTLT 321 (329)
T ss_dssp S-EEEEEESS---SCCEEEEEEE
T ss_pred C-CEEEEECC---CCEEEEEeCC
Confidence 8 56654332 3467777654
|
| >1jmk_C SRFTE, surfactin synthetase; thioesterase, non-ribosomal peptide synthesis, alpha-beta hydrolase, cyclic peptide; 1.71A {Bacillus subtilis} SCOP: c.69.1.22 | Back alignment and structure |
|---|
Probab=98.39 E-value=1.3e-06 Score=85.39 Aligned_cols=90 Identities=9% Similarity=0.018 Sum_probs=62.1
Q ss_pred CccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCccHHHHHHHHHHHHHHcCCCC
Q 004766 480 SHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQ 559 (732)
Q Consensus 480 ~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d 559 (732)
..|.|+++||..+.. ..|. .+...|. . +.|+.+|++|.+. ..+|+.+.++.+..
T Consensus 16 ~~~~l~~~hg~~~~~--~~~~-~~~~~l~-~-~~v~~~d~~g~~~----------------~~~~~~~~i~~~~~----- 69 (230)
T 1jmk_C 16 QEQIIFAFPPVLGYG--LMYQ-NLSSRLP-S-YKLCAFDFIEEED----------------RLDRYADLIQKLQP----- 69 (230)
T ss_dssp CSEEEEEECCTTCCG--GGGH-HHHHHCT-T-EEEEEECCCCSTT----------------HHHHHHHHHHHHCC-----
T ss_pred CCCCEEEECCCCCch--HHHH-HHHHhcC-C-CeEEEecCCCHHH----------------HHHHHHHHHHHhCC-----
Confidence 357899999987653 2333 2345566 5 9999999998542 23466666655421
Q ss_pred CCcEEEEecChhHHHHHHHHhhC---CCeeeEEEEcCCc
Q 004766 560 SRKLCIEGGSNGGLLVGACINQR---PDLFGCALAHVGV 595 (732)
Q Consensus 560 ~~~i~i~G~S~GG~l~~~~~~~~---p~~f~a~v~~~p~ 595 (732)
.+++.++|+|+||.++..++.+. ++..+.+|+..+.
T Consensus 70 ~~~~~l~G~S~Gg~ia~~~a~~~~~~~~~v~~lvl~~~~ 108 (230)
T 1jmk_C 70 EGPLTLFGYSAGCSLAFEAAKKLEGQGRIVQRIIMVDSY 108 (230)
T ss_dssp SSCEEEEEETHHHHHHHHHHHHHHHTTCCEEEEEEESCC
T ss_pred CCCeEEEEECHhHHHHHHHHHHHHHcCCCccEEEEECCC
Confidence 25799999999999999888764 4567777766554
|
| >2x5x_A PHB depolymerase PHAZ7; biopolymers, oxyanion HOLE, hydrolase, biodegradation, catal; HET: PG4; 1.20A {Paucimonas lemoignei} PDB: 2vtv_A* 2x76_A | Back alignment and structure |
|---|
Probab=98.38 E-value=1e-06 Score=91.00 Aligned_cols=110 Identities=9% Similarity=-0.010 Sum_probs=77.2
Q ss_pred CccEEEEEcCCCCccC--------CCCc----ChhHHHHHHhcCcE---EEEEcccCCCCCchhHHhcccccCCccHHHH
Q 004766 480 SHPCLLYGYGGFNISV--------TPSF----SVSRTILMRHLGAV---FCIANIRGGGEYGEEWHKGGALAKKQNCFDD 544 (732)
Q Consensus 480 ~~P~vv~~hG~~~~~~--------~~~~----~~~~~~~l~~~G~~---v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D 544 (732)
..+.||++||..+... ...| .. +...|.++||. |+.+|+||.|..... ..........++
T Consensus 39 ~~~pVVlvHG~~~~~~~~~~~~~~~~~w~~~~~~-l~~~L~~~Gy~~~~V~~~D~~g~G~S~~~----~~~~~~~~~~~~ 113 (342)
T 2x5x_A 39 TKTPVIFIHGNGDNAISFDMPPGNVSGYGTPARS-VYAELKARGYNDCEIFGVTYLSSSEQGSA----QYNYHSSTKYAI 113 (342)
T ss_dssp CSCCEEEECCTTCCGGGGGCCCCCCTTTCCCSSC-HHHHHHHTTCCTTSEEEECCSCHHHHTCG----GGCCBCHHHHHH
T ss_pred CCCeEEEECCcCCCcccccccccccccccccHHH-HHHHHHhCCCCCCeEEEEeCCCCCccCCc----cccCCHHHHHHH
Confidence 3455899999877431 2344 43 44556658998 999999986531100 001122345788
Q ss_pred HHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhC--CCeeeEEEEcCCcc
Q 004766 545 FISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQR--PDLFGCALAHVGVM 596 (732)
Q Consensus 545 ~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~--p~~f~a~v~~~p~~ 596 (732)
+.+.++.+.+. ...+++.++||||||+++..++.++ |++++.+|+..|..
T Consensus 114 l~~~I~~l~~~--~g~~~v~LVGHSmGG~iA~~~a~~~~~p~~V~~lVlla~p~ 165 (342)
T 2x5x_A 114 IKTFIDKVKAY--TGKSQVDIVAHSMGVSMSLATLQYYNNWTSVRKFINLAGGI 165 (342)
T ss_dssp HHHHHHHHHHH--HTCSCEEEEEETHHHHHHHHHHHHHTCGGGEEEEEEESCCT
T ss_pred HHHHHHHHHHH--hCCCCEEEEEECHHHHHHHHHHHHcCchhhhcEEEEECCCc
Confidence 88888888765 2346899999999999999999988 89999999877654
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=98.36 E-value=0.00018 Score=76.80 Aligned_cols=203 Identities=11% Similarity=0.073 Sum_probs=118.5
Q ss_pred EEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcc
Q 004766 133 ALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTET 212 (732)
Q Consensus 133 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~ 212 (732)
...+++|+|||+ +|+.+..+ ..|+++|++++............. ++|+|||+.|+.+...
T Consensus 132 ~P~~la~d~~g~--lyv~d~~~---~~I~~id~~~g~~~~~~~~~~~~~-ia~~~~g~~l~~~d~~-------------- 191 (409)
T 3hrp_A 132 YMWGIAAVGNNT--VLAYQRDD---PRVRLISVDDNKVTTVHPGFKGGK-PAVTKDKQRVYSIGWE-------------- 191 (409)
T ss_dssp CEEEEEECSTTE--EEEEETTT---TEEEEEETTTTEEEEEEETCCBCB-CEECTTSSEEEEEBSS--------------
T ss_pred CceEEEEeCCCC--EEEEecCC---CcEEEEECCCCEEEEeeccCCCCc-eeEecCCCcEEEEecC--------------
Confidence 456788999998 45555433 379999999887543222221224 9999999987776321
Q ss_pred cCCcccEEEEEECCCCCCCCeEEEec-CCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCC
Q 004766 213 DSNLYHEFYYHFLGTKQSEDILCWKD-PEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDG 291 (732)
Q Consensus 213 ~~~~~~~v~~~~lgt~~~~~~~v~~~-~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 291 (732)
....|++++..++... ..+-.. ........+++++|++..|++. . . ...|+.++.+++.
T Consensus 192 ---~~~~I~~~d~~~~~~~-~~~g~~~~~~~~~p~~iav~p~~g~lyv~-d-~---~~~I~~~d~~~~~----------- 251 (409)
T 3hrp_A 192 ---GTHTVYVYMKASGWAP-TRIGQLGSTFSGKIGAVALDETEEWLYFV-D-S---NKNFGRFNVKTQE----------- 251 (409)
T ss_dssp ---TTCEEEEEEGGGTTCE-EEEEECCTTSCSCCCBCEECTTSSEEEEE-C-T---TCEEEEEETTTCC-----------
T ss_pred ---CCceEEEEEcCCCcee-EEeeeccchhcCCcEEEEEeCCCCeEEEE-E-C---CCcEEEEECCCCC-----------
Confidence 1227888887654321 111010 1011223478899977777663 2 2 3469999987642
Q ss_pred CCCcEEe----ee---cccce-EEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCC-------------CCC
Q 004766 292 LLPFVKL----ID---GFDAQ-YEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEA-------------ERD 350 (732)
Q Consensus 292 ~~~~~~l----~~---~~~~~-~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~-------------~~~ 350 (732)
...+ .. ..... ...++|+++.||+... .+.+|++++.++. ...+.... .-.
T Consensus 252 ---~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~---~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~ 323 (409)
T 3hrp_A 252 ---VTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQ---NLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFA 323 (409)
T ss_dssp ---EEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEET---TTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCS
T ss_pred ---EEEEecccccCCCCCCccccEEEeCCCCEEEEEeC---CCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeC
Confidence 1111 11 11111 3358887788887543 2457999987653 23333221 012
Q ss_pred ceeEEEEecCCEEEEEEe-cCCeeEEEEEeCCCCce
Q 004766 351 VLESATAVNLNQMIVSYL-SDVKYVLQIRDLKNGSL 385 (732)
Q Consensus 351 ~l~~~~~~~~~~l~~~~~-~~g~~~l~~~d~~~g~~ 385 (732)
...++.+.+++.||++.. .+ .+|+++++.+|+.
T Consensus 324 ~P~gia~d~dG~lyvad~~~~--~~I~~~~~~~G~v 357 (409)
T 3hrp_A 324 QPNGMTVDEDGNFYIVDGFKG--YCLRKLDILDGYV 357 (409)
T ss_dssp SEEEEEECTTCCEEEEETTTT--CEEEEEETTTTEE
T ss_pred CCeEEEEeCCCCEEEEeCCCC--CEEEEEECCCCEE
Confidence 346788887667777754 44 6899999666764
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=98.34 E-value=1e-05 Score=86.10 Aligned_cols=211 Identities=8% Similarity=-0.121 Sum_probs=108.3
Q ss_pred CCCEEEEeEEECC--------CCcEEEEEEeccCCceEEEEEEECCCCceeccc-ccceeeeeEEEEeCCcEEEEEEecC
Q 004766 129 DGTAALIKVSVSE--------DAKYLAYALSYSGSDWATIKLMRIEDQIVEADA-LSWFKFSSIAWTHDSKGFFYSRYPA 199 (732)
Q Consensus 129 ~~~~~~~~~~~SP--------DG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~-~~~~~~~~~~WspDg~~l~y~~~~~ 199 (732)
++.-.+..+.||| ||++||-.. +..+|+|||+.++..+... ........++|+|++..++.+..
T Consensus 134 gH~~~v~~v~~~p~~~~~~~~d~~~las~s-----~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~-- 206 (393)
T 4gq1_A 134 GHHNFVNDIDIADVYSADNRLAEQVIASVG-----DDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGE-- 206 (393)
T ss_dssp SCSSCEEEEEEEEEECTTCSEEEEEEEEEE-----TTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEE--
T ss_pred CCCCceEEEEEccccccccCCCCCEEEEEE-----CCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecC--
Confidence 3445678899998 999988553 3358999999877643221 11223468999999876555432
Q ss_pred CCCCCCCCCCCcccCCcccEEEEEECCCCCCCCeEEEec---------------------CCCCeeEEEeEEe-cCCcEE
Q 004766 200 PKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKD---------------------PEHPKYIFSGHVT-EDGQYL 257 (732)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~---------------------~~~~~~~~~~~~S-pDg~~l 257 (732)
....|.+|++.++.......... .........+.|+ |||+.|
T Consensus 207 ----------------~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l 270 (393)
T 4gq1_A 207 ----------------RNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGI 270 (393)
T ss_dssp ----------------TTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEE
T ss_pred ----------------CCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEE
Confidence 22367888887654221110000 0011112345565 899998
Q ss_pred EEEEecCCcceEEEEEEeCCCCCCCcccccccCC-----CC-CcEEeeecccceEEEEEecCCeEEEEeCCCCCCceEEE
Q 004766 258 VMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDG-----LL-PFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIR 331 (732)
Q Consensus 258 ~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~-----~~-~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~ 331 (732)
+....+ ..+.++|+..++.......+... .. ..+............+.+..+.+++.+. .....|..
T Consensus 271 ~s~s~d-----~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg--s~Dg~V~l 343 (393)
T 4gq1_A 271 LAMCKS-----GAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAH--SQHGLIQL 343 (393)
T ss_dssp EEECTT-----SEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEE--TTTTEEEE
T ss_pred EEEeCC-----CCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEE--CCCCEEEE
Confidence 755432 34667777654321000000000 00 0000000000001124443344444432 22457889
Q ss_pred EeCCCCCCceEeccCCCCCceeEEEEecCCEEEEEEecCC
Q 004766 332 VDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDV 371 (732)
Q Consensus 332 ~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~~l~~~~~~~g 371 (732)
+|+.++.....+..+. ..+.++.|++++..++...++|
T Consensus 344 wd~~~~~~~~~~~~~~--~~V~svafspdG~~LA~as~~G 381 (393)
T 4gq1_A 344 INTYEKDSNSIPIQLG--MPIVDFCWHQDGSHLAIATEGS 381 (393)
T ss_dssp EETTCTTCCEEEEECS--SCEEEEEECTTSSEEEEEESSE
T ss_pred EECCCCcEEEEecCCC--CcEEEEEEcCCCCEEEEEeCCC
Confidence 9998876445555544 5788999999877777777775
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=98.33 E-value=0.00011 Score=74.83 Aligned_cols=220 Identities=10% Similarity=0.001 Sum_probs=106.0
Q ss_pred EEEEeEEECCC----CcEEEEEEeccCCceEEEEEEECCCCceecccc--cceeeeeEEEEeCCcEEEEEEecCCCCC-C
Q 004766 132 AALIKVSVSED----AKYLAYALSYSGSDWATIKLMRIEDQIVEADAL--SWFKFSSIAWTHDSKGFFYSRYPAPKEG-K 204 (732)
Q Consensus 132 ~~~~~~~~SPD----G~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~--~~~~~~~~~WspDg~~l~y~~~~~~~~~-~ 204 (732)
..+..+.+||| +++++-.. .++.|+++.+|+.+.... .......++++|||+.+.-.....+... .
T Consensus 112 ~~v~sla~spd~~~~~~~l~s~g-------~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l 184 (356)
T 2w18_A 112 REIRALFCSSDDESEKQVLLKSG-------NIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETIL 184 (356)
T ss_dssp EEEEEECC------CCEEEEEEE-------EEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEE
T ss_pred cceEEEEECCCccccccEEEeCC-------CeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeE
Confidence 45778889999 98888632 235566666666433211 1112344555666654332111111000 0
Q ss_pred CC----CCCCc-ccCCcccEEEEEECCCCCCCCeEEEecCCC-CeeEEEeEEecCCcEEEEEEecC-------CcceEEE
Q 004766 205 DM----DAGTE-TDSNLYHEFYYHFLGTKQSEDILCWKDPEH-PKYIFSGHVTEDGQYLVMCIEEN-------CDPVNKV 271 (732)
Q Consensus 205 ~~----~~~~~-~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~-~~~~~~~~~SpDg~~l~~~~~~~-------~~~~~~l 271 (732)
.| +++.. ........|.+|++.+++.. ..+..... .......+|||||++++..+.+. .+....+
T Consensus 185 ~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l--~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tI 262 (356)
T 2w18_A 185 TFAEVQGMQEALLGTTIMNNIVIWNLKTGQLL--KKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQL 262 (356)
T ss_dssp EEEEEETSTTEEEEEETTSEEEEEETTTCCEE--EEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEE
T ss_pred EeeccCCCCceEEEecCCCcEEEEECCCCcEE--EEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEE
Confidence 00 00000 01234567999999887532 22322111 11234568999999986544211 1123556
Q ss_pred EEEeCCCCCCCcccccccCCCCCcEEee----ecccceEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCC
Q 004766 272 YYCDLSALPEGLEGFKKRDGLLPFVKLI----DGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEA 347 (732)
Q Consensus 272 ~~~d~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~ 347 (732)
.+++..++. ....+. .+....+...+.++..++ .... +..|..+|+.+++...++..+.
T Consensus 263 klWd~~tgk-------------~l~v~~~~~p~Gh~~~~lsg~~sg~~lA-SgS~---DgTIkIWDl~tGk~l~tL~gH~ 325 (356)
T 2w18_A 263 IVINPKTTL-------------SVGVMLYCLPPGQAGRFLEGDVKDHCAA-AILT---SGTIAIWDLLLGQCTALLPPVS 325 (356)
T ss_dssp EEEETTTTE-------------EEEEEEECCCTTCCCCEEEEEEETTEEE-EEET---TSCEEEEETTTCSEEEEECCC-
T ss_pred EEEECCCCE-------------EEEEEEeeccCCCcceeEccccCCCEEE-EEcC---CCcEEEEECCCCcEEEEecCCC
Confidence 667776632 011110 011001111111222222 2222 3468889999987555665554
Q ss_pred CCCceeEEEEecCCEEEEEEecCCeeEEEEEeC
Q 004766 348 ERDVLESATAVNLNQMIVSYLSDVKYVLQIRDL 380 (732)
Q Consensus 348 ~~~~l~~~~~~~~~~l~~~~~~~g~~~l~~~d~ 380 (732)
+..+..+.|++++.++++...|+ .|++||.
T Consensus 326 -~~vvs~vafSPDG~~LaSGS~D~--TIklWd~ 355 (356)
T 2w18_A 326 -DQHWSFVKWSGTDSHLLAGQKDG--NIFVYHY 355 (356)
T ss_dssp --CCCCEEEECSSSSEEEEECTTS--CEEEEEE
T ss_pred -CCeEEEEEECCCCCEEEEEECCC--cEEEecC
Confidence 34455678898778888888884 6777774
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=98.28 E-value=0.0026 Score=68.33 Aligned_cols=229 Identities=15% Similarity=0.086 Sum_probs=133.4
Q ss_pred EEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecccc-cceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCc
Q 004766 133 ALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADAL-SWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTE 211 (732)
Q Consensus 133 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~-~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~ 211 (732)
.+..+.++ +++|+... .+ .+|++||+++++.+.... .......+.|+ ++.|+....
T Consensus 161 ~v~~~~~~--~~~l~s~~-~d----g~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~-------------- 217 (445)
T 2ovr_B 161 GVWSSQMR--DNIIISGS-TD----RTLKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSR-------------- 217 (445)
T ss_dssp CEEEEEEE--TTEEEEEE-TT----SCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEET--------------
T ss_pred CEEEEEec--CCEEEEEe-CC----CeEEEEECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeC--------------
Confidence 35566676 55555442 22 479999999998543221 11123566774 566766543
Q ss_pred ccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCC
Q 004766 212 TDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDG 291 (732)
Q Consensus 212 ~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 291 (732)
...|.+|++.++.. +..+.. +......+.+ ||++++....++ .+.++|+.++.
T Consensus 218 -----dg~i~~wd~~~~~~--~~~~~~--~~~~v~~~~~--~~~~l~~~~~dg-----~i~iwd~~~~~----------- 270 (445)
T 2ovr_B 218 -----DATLRVWDIETGQC--LHVLMG--HVAAVRCVQY--DGRRVVSGAYDF-----MVKVWDPETET----------- 270 (445)
T ss_dssp -----TSEEEEEESSSCCE--EEEEEC--CSSCEEEEEE--CSSCEEEEETTS-----CEEEEEGGGTE-----------
T ss_pred -----CCEEEEEECCCCcE--EEEEcC--CcccEEEEEE--CCCEEEEEcCCC-----EEEEEECCCCc-----------
Confidence 23689999876542 222322 2233444555 888887665433 37888887632
Q ss_pred CCCcEEeeecccceEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecCCEEEEEEecCC
Q 004766 292 LLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDV 371 (732)
Q Consensus 292 ~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~~l~~~~~~~g 371 (732)
....+. +.......+..++..++..+. ...|..+|+.++.....+..+. ..+..+.+.+ + ++++...++
T Consensus 271 --~~~~~~-~~~~~v~~~~~~~~~l~~~~~----d~~i~i~d~~~~~~~~~~~~~~--~~v~~~~~~~-~-~l~~~~~dg 339 (445)
T 2ovr_B 271 --CLHTLQ-GHTNRVYSLQFDGIHVVSGSL----DTSIRVWDVETGNCIHTLTGHQ--SLTSGMELKD-N-ILVSGNADS 339 (445)
T ss_dssp --EEEEEC-CCSSCEEEEEECSSEEEEEET----TSCEEEEETTTCCEEEEECCCC--SCEEEEEEET-T-EEEEEETTS
T ss_pred --EeEEec-CCCCceEEEEECCCEEEEEeC----CCeEEEEECCCCCEEEEEcCCc--ccEEEEEEeC-C-EEEEEeCCC
Confidence 122222 222223334447777765544 2358889998876444444433 4566666654 4 555666664
Q ss_pred eeEEEEEeCCCCceeeeccc---ccceeeEeecccCCcEEEEEEecCCCCceEEEEECCCCC
Q 004766 372 KYVLQIRDLKNGSLLHQLPI---EIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 430 (732)
Q Consensus 372 ~~~l~~~d~~~g~~~~~l~~---~~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~~ 430 (732)
.|.+||+.+++.+..+.. ....+..+.+ +++.++ +.+. -..+..||+.+++
T Consensus 340 --~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~-s~~~---dg~v~iwd~~~~~ 393 (445)
T 2ovr_B 340 --TVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF--NKNFVI-TSSD---DGTVKLWDLKTGE 393 (445)
T ss_dssp --CEEEEETTTCCEEEEECSTTSCSSCEEEEEE--CSSEEE-EEET---TSEEEEEETTTCC
T ss_pred --eEEEEECCCCcEEEEEccCCCCCCCEEEEEE--CCCEEE-EEeC---CCeEEEEECCCCc
Confidence 688999988887666664 2445666665 445443 3332 3689999998885
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.26 E-value=1.7e-05 Score=92.25 Aligned_cols=207 Identities=11% Similarity=0.008 Sum_probs=122.6
Q ss_pred EEEEeEEECCC--CcEEEEEEeccCCceEEEEEEECCCCc--eec-ccccceeeeeEEEEeC--CcEEEEEEecCCCCCC
Q 004766 132 AALIKVSVSED--AKYLAYALSYSGSDWATIKLMRIEDQI--VEA-DALSWFKFSSIAWTHD--SKGFFYSRYPAPKEGK 204 (732)
Q Consensus 132 ~~~~~~~~SPD--G~~la~~~~~~G~e~~~i~v~dl~~g~--~~~-~~~~~~~~~~~~WspD--g~~l~y~~~~~~~~~~ 204 (732)
..+..+.|||+ |++|+.+.. + ..|++||+.+++ .+. ..........++|+|+ ++.|+....+
T Consensus 54 ~~V~~l~~s~~~~~~~l~s~s~-D----g~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~d------ 122 (753)
T 3jro_A 54 GPVWRVDWAHPKFGTILASCSY-D----GKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSD------ 122 (753)
T ss_dssp SCEEEEEECCTTSCSEEEEEET-T----SCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT------
T ss_pred CceEEEEecCCCCCCEEEEEeC-C----CeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCC------
Confidence 44778999998 998886642 2 479999999886 221 1112223578999999 8888877533
Q ss_pred CCCCCCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEec-------------CCcEEEEEEecCCcceEEE
Q 004766 205 DMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTE-------------DGQYLVMCIEENCDPVNKV 271 (732)
Q Consensus 205 ~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~Sp-------------Dg~~l~~~~~~~~~~~~~l 271 (732)
..|.+|++.++.......... +...+..+.|+| ||+.++....++. |
T Consensus 123 -------------g~I~vwdl~~~~~~~~~~~~~--~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~-----I 182 (753)
T 3jro_A 123 -------------GKVSVVEFKENGTTSPIIIDA--HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNL-----V 182 (753)
T ss_dssp -------------SEEEEEECCSSSCCCCEEEEC--CSSCEEEEEECCCC---------CGGGCCEEEEETTSC-----E
T ss_pred -------------CcEEEEEeecCCCcceeEeec--CCCceEEEEecCcccccccccccCCCCCEEEEEECCCe-----E
Confidence 368899987764333333332 234567889999 6888876654432 7
Q ss_pred EEEeCCCCCCCcccccccCCCCCcEEeeecccceE-EEEEec---CCeEEEEeCCCCCCceEEEEeCCCCCC--ceEecc
Q 004766 272 YYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQY-EVIAND---DTVFTFLTNKDAPKYKIIRVDLKEPND--WFEVIP 345 (732)
Q Consensus 272 ~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~s~d---g~~l~~~s~~~~~~~~l~~~d~~~~~~--~~~l~~ 345 (732)
.++|+.++... ......+........ ..|+|+ |+.|+..+. .+.|..+|+.++.. ...+..
T Consensus 183 ~iwd~~~~~~~---------~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~----Dg~I~iwd~~~~~~~~~~~~~~ 249 (753)
T 3jro_A 183 KIWKYNSDAQT---------YVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQ----DRTCIIWTQDNEQGPWKKTLLK 249 (753)
T ss_dssp EEEEEETTTTE---------EEEEEEECCCSSCEEEEEECCCCSSSEEEEEEES----SSCEEEEEESSSSSCCBCCBSS
T ss_pred EEEeccCCccc---------ceeeeeecCCCCcEEEEEeccCCCCCCEEEEEec----CCEEEEecCCCCCCcceeEEec
Confidence 77777653210 001111211111112 258898 555554333 23577777766531 111111
Q ss_pred -CCCCCceeEEEEecCCEEEEEEecCCeeEEEEEeCCCCc
Q 004766 346 -EAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGS 384 (732)
Q Consensus 346 -~~~~~~l~~~~~~~~~~l~~~~~~~g~~~l~~~d~~~g~ 384 (732)
......+..+.+++++.++++...+| .|++|++.++.
T Consensus 250 ~~~~~~~v~~l~~spdg~~l~s~s~Dg--~I~vwd~~~~~ 287 (753)
T 3jro_A 250 EEKFPDVLWRASWSLSGNVLALSGGDN--KVTLWKENLEG 287 (753)
T ss_dssp SSCCSSCCCCEEECTTTCCEEEECSSS--CEECCBCCSSS
T ss_pred cCCCCCceEEEEEcCCCCEEEEEcCCC--EEEEEecCCCC
Confidence 11234577889988777777777775 58888886443
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=98.25 E-value=8.3e-05 Score=77.66 Aligned_cols=80 Identities=11% Similarity=-0.010 Sum_probs=51.9
Q ss_pred EEEecCCeEEEEeCCC-C----CCceEEEEeCCCCCCceEeccCCCCCceeEEEEecCC-EEEEEEe-cCCeeEEEEEeC
Q 004766 308 VIANDDTVFTFLTNKD-A----PKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLN-QMIVSYL-SDVKYVLQIRDL 380 (732)
Q Consensus 308 ~~s~dg~~l~~~s~~~-~----~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~-~l~~~~~-~~g~~~l~~~d~ 380 (732)
.+++||+++|+..... + ....+..+|+++.+.... ++-. ....++.+++|+ ++++... .+ ..|.++|+
T Consensus 270 ~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~-i~vg--~~p~gi~~s~Dg~~l~va~~~~~--~~VsVID~ 344 (368)
T 1mda_H 270 AKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGP-ISNG--HDSDAIIAAQDGASDNYANSAGT--EVLDIYDA 344 (368)
T ss_dssp EEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEEC-CEEE--EEECEEEECCSSSCEEEEEETTT--TEEEEEES
T ss_pred EEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEE-EECC--CCcceEEECCCCCEEEEEccCCC--CeEEEEEC
Confidence 4899999999865411 1 012455999988762222 2211 235678888765 4666665 33 57999999
Q ss_pred CCCceeeecccc
Q 004766 381 KNGSLLHQLPIE 392 (732)
Q Consensus 381 ~~g~~~~~l~~~ 392 (732)
++++.++.|...
T Consensus 345 ~t~kvv~~I~vg 356 (368)
T 1mda_H 345 ASDQDQSSVELD 356 (368)
T ss_dssp SSCEEEEECCCC
T ss_pred CCCcEEEEEECC
Confidence 999887788654
|
| >2hfk_A Pikromycin, type I polyketide synthase pikaiv; alpha/beta hydrolase, thioesterase; HET: E4H; 1.79A {Streptomyces venezuelae} PDB: 2h7x_A* 2h7y_A* 2hfj_A* 1mna_A 1mn6_A 1mnq_A | Back alignment and structure |
|---|
Probab=98.24 E-value=1.1e-06 Score=90.83 Aligned_cols=209 Identities=11% Similarity=-0.039 Sum_probs=107.0
Q ss_pred EEEEEcC--CCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCccHHHHHHHHHHHHHHcCCCCC
Q 004766 483 CLLYGYG--GFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQS 560 (732)
Q Consensus 483 ~vv~~hG--~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~ 560 (732)
.|+++|| +.+. ...|. .+...|. .++.|+.++.||.|...... ......+++++.+.+..++..- ...
T Consensus 91 ~l~~~hg~g~~~~--~~~~~-~l~~~L~-~~~~v~~~d~~G~g~~~~~~-----~~~~~~~~~~~a~~~~~~i~~~-~~~ 160 (319)
T 2hfk_A 91 VLVGCTGTAANGG--PHEFL-RLSTSFQ-EERDFLAVPLPGYGTGTGTG-----TALLPADLDTALDAQARAILRA-AGD 160 (319)
T ss_dssp EEEEECCCCTTCS--TTTTH-HHHHTTT-TTCCEEEECCTTCCBC---C-----BCCEESSHHHHHHHHHHHHHHH-HTT
T ss_pred cEEEeCCCCCCCc--HHHHH-HHHHhcC-CCCceEEecCCCCCCCcccc-----cCCCCCCHHHHHHHHHHHHHHh-cCC
Confidence 7899998 3332 23443 3445566 79999999999977520000 0111234444443332222210 123
Q ss_pred CcEEEEecChhHHHHHHHHhhC----CCeeeEEEEcCCccccccc-c-cC--CCCCccccccCCCCCHHHHHHHHhcCc-
Q 004766 561 RKLCIEGGSNGGLLVGACINQR----PDLFGCALAHVGVMDMLRY-H-KF--TIGHAWVSDFGCSEEEEEFYWLIKYSP- 631 (732)
Q Consensus 561 ~~i~i~G~S~GG~l~~~~~~~~----p~~f~a~v~~~p~~d~~~~-~-~~--~~~~~~~~~~g~p~~~~~~~~~~~~sp- 631 (732)
+++.++|+|+||.++..++.+. ++..+.+|+..+....... . .+ .....+....-.+.....+..+..|.-
T Consensus 161 ~p~~l~G~S~GG~vA~~~A~~l~~~~g~~v~~lvl~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (319)
T 2hfk_A 161 APVVLLGHAGGALLAHELAFRLERAHGAPPAGIVLVDPYPPGHQEPIEVWSRQLGEGLFAGELEPMSDARLLAMGRYARF 240 (319)
T ss_dssp SCEEEEEETHHHHHHHHHHHHHHHHHSCCCSEEEEESCCCTTSCHHHHHTHHHHHHHHHHTCSSCCCHHHHHHHHHHHHH
T ss_pred CCEEEEEECHHHHHHHHHHHHHHHhhCCCceEEEEeCCCCCCchhHHHHHHHHhhHHHHHhhccccchHHHHHHHHHHHH
Confidence 5799999999999999988875 4557777765543211000 0 00 000000000111212222222222110
Q ss_pred --ccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchH-HHHHHHHHHHhhcCCCCCCCCCCCEEEEEeCCCCCCCCCch
Q 004766 632 --LHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLH-SLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPT 708 (732)
Q Consensus 632 --~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~ 708 (732)
..... .+..|+|+++| +|..+++.. ...+ ... ....+.++.++ +||......
T Consensus 241 ~~~~~~~----------~i~~Pvl~i~g-~D~~~~~~~~~~~~----~~~---------~~~~~~~~~v~-g~H~~~~~e 295 (319)
T 2hfk_A 241 LAGPRPG----------RSSAPVLLVRA-SEPLGDWQEERGDW----RAH---------WDLPHTVADVP-GDHFTMMRD 295 (319)
T ss_dssp HHSCCCC----------CCCSCEEEEEE-SSCSSCCCGGGCCC----SCC---------CSSCSEEEEES-SCTTHHHHT
T ss_pred HHhCCCC----------CcCCCEEEEEc-CCCCCCccccccch----hhc---------CCCCCEEEEeC-CCcHHHHHH
Confidence 01112 37889999999 999988765 3222 111 12346778887 599742111
Q ss_pred HHHHHHHHHHHHHHHHHhC
Q 004766 709 QKMIDEAADRYGFMAKMLG 727 (732)
Q Consensus 709 ~~~~~~~~~~~~fl~~~l~ 727 (732)
. .....+.+.+||.+...
T Consensus 296 ~-~~~~~~~i~~~L~~~~~ 313 (319)
T 2hfk_A 296 H-APAVAEAVLSWLDAIEG 313 (319)
T ss_dssp C-HHHHHHHHHHHHHHHHC
T ss_pred h-HHHHHHHHHHHHHhcCC
Confidence 1 23445567788876543
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.24 E-value=7.3e-05 Score=77.82 Aligned_cols=61 Identities=15% Similarity=0.152 Sum_probs=44.6
Q ss_pred EEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecccccceeeeeEEE--EeCCcEEEEEEec
Q 004766 133 ALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWFKFSSIAW--THDSKGFFYSRYP 198 (732)
Q Consensus 133 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~~~~~~~~~~W--spDg~~l~y~~~~ 198 (732)
.+..+.|||||++|+.... + ..|++||+.+++.+...........++| +||++.|+....+
T Consensus 88 ~v~~~~~~~~~~~l~s~~~-d----g~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d 150 (368)
T 3mmy_A 88 PVLDVCWSDDGSKVFTASC-D----KTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWD 150 (368)
T ss_dssp CEEEEEECTTSSEEEEEET-T----SEEEEEETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEETT
T ss_pred CEEEEEECcCCCEEEEEcC-C----CcEEEEEcCCCCceeeccccCceEEEEEEeCCCCCEEEEccCC
Confidence 4678999999999985532 2 4899999999986543333334578999 8899888776543
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.23 E-value=0.00018 Score=74.56 Aligned_cols=179 Identities=9% Similarity=0.047 Sum_probs=99.8
Q ss_pred EEEEEECCCCceecccc--cceeeeeEEEEe--CCcEEEEEEecCCCCCCCCCCCCcccCCcccEEEEEECCCCCCCCeE
Q 004766 159 TIKLMRIEDQIVEADAL--SWFKFSSIAWTH--DSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDIL 234 (732)
Q Consensus 159 ~i~v~dl~~g~~~~~~~--~~~~~~~~~Wsp--Dg~~l~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~ 234 (732)
.+.++|+.+++.+.... .......++|+| +++.|+....+ ..|.+|++.++.. ..
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~d-------------------g~i~~wd~~~~~~--~~ 163 (343)
T 3lrv_A 105 QITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNR-------------------GTIGFQSYEDDSQ--YI 163 (343)
T ss_dssp EEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETT-------------------CCEEEEESSSSCE--EE
T ss_pred ceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCC-------------------CcEEEEECCCCcE--EE
Confidence 34556666776433221 111247899999 99988876543 3588999886543 22
Q ss_pred EEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCCCCcEEeee-cccceE-EEEEec
Q 004766 235 CWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLID-GFDAQY-EVIAND 312 (732)
Q Consensus 235 v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~-~~~s~d 312 (732)
+..... ...+..++|+|||++|+....+ ..|.++|+.++... ...+.. ...... ..|+|+
T Consensus 164 ~~~~~~-~~~i~~~~~~pdg~~lasg~~d-----g~i~iwd~~~~~~~------------~~~~~~~h~~~v~~l~fs~~ 225 (343)
T 3lrv_A 164 VHSAKS-DVEYSSGVLHKDSLLLALYSPD-----GILDVYNLSSPDQA------------SSRFPVDEEAKIKEVKFADN 225 (343)
T ss_dssp EECCCS-SCCCCEEEECTTSCEEEEECTT-----SCEEEEESSCTTSC------------CEECCCCTTSCEEEEEECTT
T ss_pred EEecCC-CCceEEEEECCCCCEEEEEcCC-----CEEEEEECCCCCCC------------ccEEeccCCCCEEEEEEeCC
Confidence 332222 2234578999999998765433 34888898874310 122222 111112 258999
Q ss_pred CCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCC-CCCcee--EEEEecCCEEEEEEec-CCeeEEEEEeCCCC
Q 004766 313 DTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEA-ERDVLE--SATAVNLNQMIVSYLS-DVKYVLQIRDLKNG 383 (732)
Q Consensus 313 g~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~-~~~~l~--~~~~~~~~~l~~~~~~-~g~~~l~~~d~~~g 383 (732)
|..|+..+ . . .|..+|+.++.....+.+.. ....+. .+.+++++.+++.... ++ .+.+|+.+++
T Consensus 226 g~~l~s~~-~---~-~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~--~i~v~~~~~~ 293 (343)
T 3lrv_A 226 GYWMVVEC-D---Q-TVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESN--SLTIYKFDKK 293 (343)
T ss_dssp SSEEEEEE-S---S-BEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTT--EEEEEEECTT
T ss_pred CCEEEEEe-C---C-eEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCC--cEEEEEEccc
Confidence 98777655 2 1 68889998765222221110 012222 4788876666666554 54 5667766433
|
| >2zyr_A Lipase, putative; fatty acid, hydrolase; HET: 1PE; 1.77A {Archaeoglobus fulgidus} PDB: 2zys_A* 2zyi_A* 2zyh_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=1.2e-06 Score=93.60 Aligned_cols=113 Identities=13% Similarity=0.093 Sum_probs=77.0
Q ss_pred CCccEEEEEcCCCCccCCCCcChhHHHHHHhcCc---EEEEEcccCCCCC----------ch--hH--------------
Q 004766 479 GSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGA---VFCIANIRGGGEY----------GE--EW-------------- 529 (732)
Q Consensus 479 ~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~---~v~~~~~rG~g~~----------g~--~~-------------- 529 (732)
+..|.||++||..+... .|.. +...|.++|| .|+++|+||.|.. |. ..
T Consensus 20 ~~~ppVVLlHG~g~s~~--~w~~-la~~La~~Gy~~~~Via~DlpG~G~S~~~~~Dv~~~G~~~~~G~n~~p~id~~~l~ 96 (484)
T 2zyr_A 20 EDFRPVVFVHGLAGSAG--QFES-QGMRFAANGYPAEYVKTFEYDTISWALVVETDMLFSGLGSEFGLNISQIIDPETLD 96 (484)
T ss_dssp -CCCCEEEECCTTCCGG--GGHH-HHHHHHHTTCCGGGEEEECCCHHHHHHHTTTSTTTTTGGGHHHHHHGGGSCHHHHH
T ss_pred CCCCEEEEECCCCCCHH--HHHH-HHHHHHHcCCCcceEEEEECCCCCcccccccccccccccccccccccccccccccc
Confidence 45678999999876542 3443 4456666899 6999999997631 00 00
Q ss_pred ---HhcccccCCccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCC---CeeeEEEEcCCccc
Q 004766 530 ---HKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRP---DLFGCALAHVGVMD 597 (732)
Q Consensus 530 ---~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p---~~f~a~v~~~p~~d 597 (732)
.... .......++++.+.++.++++ ...+++.++||||||+++..++.++| +.++++|+..|..+
T Consensus 97 ~v~~~~~-~~~~~~~~~dla~~L~~ll~~--lg~~kV~LVGHSmGG~IAl~~A~~~Pe~~~~V~~LVlIapp~~ 167 (484)
T 2zyr_A 97 KILSKSR-ERLIDETFSRLDRVIDEALAE--SGADKVDLVGHSMGTFFLVRYVNSSPERAAKVAHLILLDGVWG 167 (484)
T ss_dssp HHHTSCH-HHHHHHHHHHHHHHHHHHHHH--HCCSCEEEEEETHHHHHHHHHHHTCHHHHHTEEEEEEESCCCS
T ss_pred ccccccc-cCchhhhHHHHHHHHHHHHHH--hCCCCEEEEEECHHHHHHHHHHHHCccchhhhCEEEEECCccc
Confidence 0000 001123467777888887765 23368999999999999999999988 48899998887654
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.22 E-value=0.0023 Score=63.55 Aligned_cols=231 Identities=9% Similarity=-0.013 Sum_probs=133.9
Q ss_pred CcEEEEEEeccCCceEEEEEEECCCCceecc------cccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCCc
Q 004766 143 AKYLAYALSYSGSDWATIKLMRIEDQIVEAD------ALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNL 216 (732)
Q Consensus 143 G~~la~~~~~~G~e~~~i~v~dl~~g~~~~~------~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~~ 216 (732)
|.+|.|+. ...|+.++++++..... ........+++|+|+++.||++.. .
T Consensus 1 ~~~l~~~~------~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~------------------~ 56 (267)
T 1npe_A 1 GTHLLFAQ------TGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDI------------------S 56 (267)
T ss_dssp CEEEEEEE------EEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEET------------------T
T ss_pred CcEEEEEc------CCeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEEC------------------C
Confidence 56677764 24799999987653210 011112368999999888988742 2
Q ss_pred ccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCCCCcE
Q 004766 217 YHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFV 296 (732)
Q Consensus 217 ~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~ 296 (732)
..+|+++++.+... ..+.... .....+++++|+++.|++.... ...|+++++++.. .+
T Consensus 57 ~~~I~~~~~~g~~~--~~~~~~~--~~~p~~ia~d~~~~~lyv~d~~----~~~I~~~~~~g~~--------------~~ 114 (267)
T 1npe_A 57 EPSIGRASLHGGEP--TTIIRQD--LGSPEGIALDHLGRTIFWTDSQ----LDRIEVAKMDGTQ--------------RR 114 (267)
T ss_dssp TTEEEEEESSSCCC--EEEECTT--CCCEEEEEEETTTTEEEEEETT----TTEEEEEETTSCS--------------CE
T ss_pred CCEEEEEecCCCCc--EEEEECC--CCCccEEEEEecCCeEEEEECC----CCEEEEEEcCCCC--------------EE
Confidence 34788888865432 2333221 1234578899999888766432 3468888887521 12
Q ss_pred Eeee-ccc-ceEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecC-CEEEEEEecCCee
Q 004766 297 KLID-GFD-AQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNL-NQMIVSYLSDVKY 373 (732)
Q Consensus 297 ~l~~-~~~-~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~-~~l~~~~~~~g~~ 373 (732)
.+.. +.. ..-..++|+++.||+... .....+|+++++++.. .+.+.... -....++.++++ +.||+..... .
T Consensus 115 ~~~~~~~~~P~~i~vd~~~g~lyv~~~-~~~~~~I~~~~~dg~~-~~~~~~~~-~~~P~gia~d~~~~~lyv~d~~~--~ 189 (267)
T 1npe_A 115 VLFDTGLVNPRGIVTDPVRGNLYWTDW-NRDNPKIETSHMDGTN-RRILAQDN-LGLPNGLTFDAFSSQLCWVDAGT--H 189 (267)
T ss_dssp EEECSSCSSEEEEEEETTTTEEEEEEC-CSSSCEEEEEETTSCC-CEEEECTT-CSCEEEEEEETTTTEEEEEETTT--T
T ss_pred EEEECCCCCccEEEEeeCCCEEEEEEC-CCCCcEEEEEecCCCC-cEEEEECC-CCCCcEEEEcCCCCEEEEEECCC--C
Confidence 2222 111 112247887888887543 2224689999987654 34443222 234567888864 6788776554 5
Q ss_pred EEEEEeCCCCceeeecccccceeeEeecccCCcEEEEEEecCCCCceEEEEECCCCC
Q 004766 374 VLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 430 (732)
Q Consensus 374 ~l~~~d~~~g~~~~~l~~~~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~~ 430 (732)
+|++++++ |...+.+.........++ .+++.++++-. ....++++|..+++
T Consensus 190 ~I~~~~~~-g~~~~~~~~~~~~P~gi~--~d~~~lyva~~---~~~~v~~~d~~~g~ 240 (267)
T 1npe_A 190 RAECLNPA-QPGRRKVLEGLQYPFAVT--SYGKNLYYTDW---KTNSVIAMDLAISK 240 (267)
T ss_dssp EEEEEETT-EEEEEEEEECCCSEEEEE--EETTEEEEEET---TTTEEEEEETTTTE
T ss_pred EEEEEecC-CCceEEEecCCCCceEEE--EeCCEEEEEEC---CCCeEEEEeCCCCC
Confidence 89999997 433222211111222343 34566766432 23578999988774
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=98.21 E-value=0.00082 Score=72.20 Aligned_cols=229 Identities=11% Similarity=0.080 Sum_probs=127.5
Q ss_pred EEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecccc-cceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcc
Q 004766 134 LIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADAL-SWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTET 212 (732)
Q Consensus 134 ~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~-~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~ 212 (732)
+..+.| ||++|+.... + .+|++||+.+++.+.... .......++|+ ++.|+....+
T Consensus 176 v~~l~~--~~~~l~sg~~-d----g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~d-------------- 232 (435)
T 1p22_A 176 VLCLQY--DERVIITGSS-D----STVRVWDVNTGEMLNTLIHHCEAVLHLRFN--NGMMVTCSKD-------------- 232 (435)
T ss_dssp EEEEEC--CSSEEEEEET-T----SCEEEEESSSCCEEEEECCCCSCEEEEECC--TTEEEEEETT--------------
T ss_pred EEEEEE--CCCEEEEEcC-C----CeEEEEECCCCcEEEEEcCCCCcEEEEEEc--CCEEEEeeCC--------------
Confidence 445555 8888875532 2 479999999998543221 11124677776 3456655432
Q ss_pred cCCcccEEEEEECCCCCCCCe-EEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCC
Q 004766 213 DSNLYHEFYYHFLGTKQSEDI-LCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDG 291 (732)
Q Consensus 213 ~~~~~~~v~~~~lgt~~~~~~-~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 291 (732)
..|.+|++.++..... ..+. .+...+..+.+ +|++|+..+.+ ..+.++|+.++.
T Consensus 233 -----g~i~vwd~~~~~~~~~~~~~~--~~~~~v~~~~~--~~~~l~s~~~d-----g~i~vwd~~~~~----------- 287 (435)
T 1p22_A 233 -----RSIAVWDMASPTDITLRRVLV--GHRAAVNVVDF--DDKYIVSASGD-----RTIKVWNTSTCE----------- 287 (435)
T ss_dssp -----SCEEEEECSSSSCCEEEEEEC--CCSSCEEEEEE--ETTEEEEEETT-----SEEEEEETTTCC-----------
T ss_pred -----CcEEEEeCCCCCCceeeeEec--CCCCcEEEEEe--CCCEEEEEeCC-----CeEEEEECCcCc-----------
Confidence 3588889876543211 1222 22233445555 88888766543 348888987742
Q ss_pred CCCcEEeeecccceEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecCCEEEEEEecCC
Q 004766 292 LLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDV 371 (732)
Q Consensus 292 ~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~~l~~~~~~~g 371 (732)
....+. +.......+..+++.++..+. ...|..+|+.++.....+..+. ..+..+.+ . +..+++...++
T Consensus 288 --~~~~~~-~~~~~v~~~~~~~~~l~~g~~----dg~i~iwd~~~~~~~~~~~~h~--~~v~~~~~-~-~~~l~sg~~dg 356 (435)
T 1p22_A 288 --FVRTLN-GHKRGIACLQYRDRLVVSGSS----DNTIRLWDIECGACLRVLEGHE--ELVRCIRF-D-NKRIVSGAYDG 356 (435)
T ss_dssp --EEEEEE-CCSSCEEEEEEETTEEEEEET----TSCEEEEETTTCCEEEEECCCS--SCEEEEEC-C-SSEEEEEETTS
T ss_pred --EEEEEc-CCCCcEEEEEeCCCEEEEEeC----CCeEEEEECCCCCEEEEEeCCc--CcEEEEEe-c-CCEEEEEeCCC
Confidence 122222 222233334456776665443 3468889998876444444443 45777776 3 45666666664
Q ss_pred eeEEEEEeCCCCc---------eeeecccccceeeEeecccCCcEEEEEEecCCCCceEEEEECCCC
Q 004766 372 KYVLQIRDLKNGS---------LLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTE 429 (732)
Q Consensus 372 ~~~l~~~d~~~g~---------~~~~l~~~~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~ 429 (732)
.|.+||+.+++ .+..+..+.+.+..+.+ ++..++ +.+ .-..+..+|+.++
T Consensus 357 --~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~-s~s---~Dg~i~iwd~~~~ 415 (435)
T 1p22_A 357 --KIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIV-SSS---HDDTILIWDFLND 415 (435)
T ss_dssp --CEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEE-ECC---SSSEEEEEC----
T ss_pred --cEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEE-EEe---CCCEEEEEECCCC
Confidence 68889986444 23344434455555554 555443 222 3457888887765
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=98.19 E-value=0.00059 Score=71.19 Aligned_cols=204 Identities=9% Similarity=-0.021 Sum_probs=114.7
Q ss_pred EeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccC
Q 004766 135 IKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDS 214 (732)
Q Consensus 135 ~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~ 214 (732)
....++++++.++++.. .+ .+|++||+.+|+.+...........+.|+++. ++.+.
T Consensus 62 ~~~~~~~~~~~~~~~~~---~d-~~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~--~~~~~------------------ 117 (355)
T 3vu4_A 62 SKVRMLHRTNYVAFVTG---VK-EVVHIWDDVKKQDVSRIKVDAPVKDLFLSREF--IVVSY------------------ 117 (355)
T ss_dssp CEEEECTTSSEEEEECS---ST-TEEEEEETTTTEEEEEEECSSCEEEEEECSSE--EEEEE------------------
T ss_pred EEEEEcCCCCEEEEEEC---Cc-cEEEEEECCCCcEEEEEECCCceEEEEEcCCE--EEEEE------------------
Confidence 46788999999987743 22 38999999999865422222234677887764 44432
Q ss_pred CcccEEEEEECCCC-CCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccc---cC
Q 004766 215 NLYHEFYYHFLGTK-QSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKK---RD 290 (732)
Q Consensus 215 ~~~~~v~~~~lgt~-~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~---~~ 290 (732)
...|++|++.+. ..-.. + .. + ....++++ .++++.+... ...|.++|+.++.... .... ..
T Consensus 118 --~~~i~i~d~~~~~~~~~~-~-~~---~--~~~~~~s~--~~la~~sg~~---~g~v~iwd~~~~~~~~-~~~~~~~~~ 182 (355)
T 3vu4_A 118 --GDVISVFKFGNPWKRITD-D-IR---F--GGVCEFSN--GLLVYSNEFN---LGQIHITKLQSSGSAT-TQDQGVQQK 182 (355)
T ss_dssp --TTEEEEEESSTTCCBSSC-C-EE---E--EEEEEEET--TEEEEEESSC---TTCEEEEECCC---------------
T ss_pred --cCEEEEEECCCCceeeEE-e-cc---C--CceEEEEc--cEEEEeCCCc---CcEEEEEECCCCCccc-ccccccccc
Confidence 125889998876 22111 1 11 1 12345666 6777653222 2347888887632000 0000 00
Q ss_pred CCCC-cEEeeecccceE-EEEEecCCeEEEEeCCCCCCce-EEEEeCCCCCCceEeccCCCCCceeEEEEecCCEEEEEE
Q 004766 291 GLLP-FVKLIDGFDAQY-EVIANDDTVFTFLTNKDAPKYK-IIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSY 367 (732)
Q Consensus 291 ~~~~-~~~l~~~~~~~~-~~~s~dg~~l~~~s~~~~~~~~-l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~~l~~~~ 367 (732)
...+ ...+........ ..|+|||+.|+..+. ... |..+|+.++.....+........+..+.+++++.++++.
T Consensus 183 ~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~----d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~ 258 (355)
T 3vu4_A 183 AILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQ----DGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVV 258 (355)
T ss_dssp ----CCEEECCCSSCEEEEEECTTSSEEEEEET----TCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEE
T ss_pred ccCcccEEEEccCCceEEEEECCCCCEEEEEeC----CCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEE
Confidence 0001 222222222222 258999987775443 235 888899887744444421123578899999877778888
Q ss_pred ecCCeeEEEEEeCCCC
Q 004766 368 LSDVKYVLQIRDLKNG 383 (732)
Q Consensus 368 ~~~g~~~l~~~d~~~g 383 (732)
..+ ..|.+||+.++
T Consensus 259 s~d--~~v~iw~~~~~ 272 (355)
T 3vu4_A 259 SDK--WTLHVFEIFND 272 (355)
T ss_dssp ETT--CEEEEEESSCC
T ss_pred ECC--CEEEEEEccCC
Confidence 777 47888998654
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.16 E-value=0.00025 Score=69.99 Aligned_cols=198 Identities=13% Similarity=0.096 Sum_probs=121.8
Q ss_pred eeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEE
Q 004766 181 SSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMC 260 (732)
Q Consensus 181 ~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~ 260 (732)
.+++|+||| .||.+... .....|...++.++.....+ ..+.. .+. ..++.+|+.|+..
T Consensus 24 ~Gl~~~~dg-~Lyvstg~----------------~~~s~v~~iD~~tg~v~~~i--~l~~~-~fg--eGi~~~g~~lyv~ 81 (266)
T 2iwa_A 24 QGLVYAEND-TLFESTGL----------------YGRSSVRQVALQTGKVENIH--KMDDS-YFG--EGLTLLNEKLYQV 81 (266)
T ss_dssp EEEEECSTT-EEEEEECS----------------TTTCEEEEEETTTCCEEEEE--ECCTT-CCE--EEEEEETTEEEEE
T ss_pred ccEEEeCCC-eEEEECCC----------------CCCCEEEEEECCCCCEEEEE--ecCCC-cce--EEEEEeCCEEEEE
Confidence 679999986 56665421 12457999999887533221 11221 132 3455567787666
Q ss_pred EecCCcceEEEEEEeCCCCCCCcccccccCCCCCcEEeeecccceEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCc
Q 004766 261 IEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDW 340 (732)
Q Consensus 261 ~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~ 340 (732)
... .+.++++|.++.+ ....+..+....+ .+++||+++|+ ++ + ..+|..+|.++.+..
T Consensus 82 t~~----~~~v~viD~~t~~-------------v~~~i~~g~~~g~-glt~Dg~~l~v-s~-g--s~~l~viD~~t~~v~ 139 (266)
T 2iwa_A 82 VWL----KNIGFIYDRRTLS-------------NIKNFTHQMKDGW-GLATDGKILYG-SD-G--TSILYEIDPHTFKLI 139 (266)
T ss_dssp ETT----CSEEEEEETTTTE-------------EEEEEECCSSSCC-EEEECSSSEEE-EC-S--SSEEEEECTTTCCEE
T ss_pred Eec----CCEEEEEECCCCc-------------EEEEEECCCCCeE-EEEECCCEEEE-EC-C--CCeEEEEECCCCcEE
Confidence 532 3569999988742 1222222201122 36789999885 55 2 348999999887632
Q ss_pred eEec-cCC--CCCceeEEEEecCCEEEEEEecCCeeEEEEEeCCCCceeeeccccc-------------ceeeEeecccC
Q 004766 341 FEVI-PEA--ERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEI-------------GSVNAISARRE 404 (732)
Q Consensus 341 ~~l~-~~~--~~~~l~~~~~~~~~~l~~~~~~~g~~~l~~~d~~~g~~~~~l~~~~-------------g~v~~~~~s~d 404 (732)
..+. ... +-..+..+.+.+ +.+|+..... ..|.++|+++|+.+..|.++. ....+++++++
T Consensus 140 ~~I~Vg~~~~p~~~~nele~~d-g~lyvn~~~~--~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~ 216 (266)
T 2iwa_A 140 KKHNVKYNGHRVIRLNELEYIN-GEVWANIWQT--DCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQE 216 (266)
T ss_dssp EEEECEETTEECCCEEEEEEET-TEEEEEETTS--SEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETT
T ss_pred EEEEECCCCcccccceeEEEEC-CEEEEecCCC--CeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCC
Confidence 3322 111 112355677774 7887665443 589999999999878887631 23467888999
Q ss_pred CcEEEEEEecCCCCceEEEEECCC
Q 004766 405 DSVVFISFTSFLIPGIVYQCNLKT 428 (732)
Q Consensus 405 ~~~l~~~~ss~~~p~~~y~~d~~~ 428 (732)
+++++++-..+ +.+|.+++..
T Consensus 217 ~~~lfVTgk~~---~~v~~i~l~~ 237 (266)
T 2iwa_A 217 NKRIFVTGKLW---PKLFEIKLHL 237 (266)
T ss_dssp TTEEEEEETTC---SEEEEEEEEE
T ss_pred CCEEEEECCCC---CeEEEEEEec
Confidence 99988876554 5788887654
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=98.16 E-value=5.2e-05 Score=81.77 Aligned_cols=116 Identities=8% Similarity=-0.065 Sum_probs=75.1
Q ss_pred EEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCC--------ce---ecc-cccceeeeeEEEEeC-CcEEEEEEecC
Q 004766 133 ALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQ--------IV---EAD-ALSWFKFSSIAWTHD-SKGFFYSRYPA 199 (732)
Q Consensus 133 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g--------~~---~~~-~~~~~~~~~~~WspD-g~~l~y~~~~~ 199 (732)
.+..++|||||++||..... |+....|+|||+.++ +. +.. .........++|+|+ ++.|+....+
T Consensus 94 ~v~~l~~spdg~~lav~~~s-gs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~D- 171 (434)
T 2oit_A 94 PIHHLALSCDNLTLSACMMS-SEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLAD- 171 (434)
T ss_dssp CEEEEEECTTSCEEEEEEEE-TTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETT-
T ss_pred cccEEEEcCCCCEEEEEEec-cCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECC-
Confidence 37789999999999875422 344579999999765 11 111 111223578999998 6666655433
Q ss_pred CCCCCCCCCCCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCC
Q 004766 200 PKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLS 277 (732)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~ 277 (732)
..|++|++.++. .+.....+...+..++|||||++|+....++ .|.++|..
T Consensus 172 ------------------g~v~iwD~~~~~----~~~~~~~~~~~v~~v~wspdg~~lasgs~dg-----~v~iwd~~ 222 (434)
T 2oit_A 172 ------------------GSIAVLQVTETV----KVCATLPSTVAVTSVCWSPKGKQLAVGKQNG-----TVVQYLPT 222 (434)
T ss_dssp ------------------SCEEEEEESSSE----EEEEEECGGGCEEEEEECTTSSCEEEEETTS-----CEEEECTT
T ss_pred ------------------CeEEEEEcCCCc----ceeeccCCCCceeEEEEcCCCCEEEEEcCCC-----cEEEEccC
Confidence 358889987652 2221111223467899999999998766433 37788876
|
| >3tej_A Enterobactin synthase component F; nonribosomal peptide, thioesterase, carrier domain, ATP- BIN enterobactin biosynthesis, ION transport, iron; HET: UF0; 1.90A {Escherichia coli} PDB: 2roq_A | Back alignment and structure |
|---|
Probab=98.15 E-value=1.1e-05 Score=83.70 Aligned_cols=102 Identities=15% Similarity=0.025 Sum_probs=68.4
Q ss_pred CCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCccHHHHHHHH-HHHHHHcCC
Q 004766 479 GSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISA-SEYLISAGY 557 (732)
Q Consensus 479 ~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~-~~~l~~~~~ 557 (732)
+..|.|+++||+.+.. ..|.. +...|. .++.|+.++.+|.|.. ... ..+++++.+. ++.+.+..
T Consensus 99 g~~~~l~~lhg~~~~~--~~~~~-l~~~L~-~~~~v~~~d~~g~~~~---~~~-------~~~~~~~a~~~~~~i~~~~- 163 (329)
T 3tej_A 99 GNGPTLFCFHPASGFA--WQFSV-LSRYLD-PQWSIIGIQSPRPNGP---MQT-------AANLDEVCEAHLATLLEQQ- 163 (329)
T ss_dssp CSSCEEEEECCTTSCC--GGGGG-GGGTSC-TTCEEEEECCCTTTSH---HHH-------CSSHHHHHHHHHHHHHHHC-
T ss_pred CCCCcEEEEeCCcccc--hHHHH-HHHhcC-CCCeEEEeeCCCCCCC---CCC-------CCCHHHHHHHHHHHHHHhC-
Confidence 4567899999987753 34443 234455 7899999999986541 111 1234444443 33333321
Q ss_pred CCCCcEEEEecChhHHHHHHHHhh---CCCeeeEEEEcCCcc
Q 004766 558 TQSRKLCIEGGSNGGLLVGACINQ---RPDLFGCALAHVGVM 596 (732)
Q Consensus 558 ~d~~~i~i~G~S~GG~l~~~~~~~---~p~~f~a~v~~~p~~ 596 (732)
..+++.++|||+||.++..++.+ +|+....+|+..+..
T Consensus 164 -~~~~~~l~G~S~Gg~ia~~~a~~L~~~~~~v~~lvl~d~~~ 204 (329)
T 3tej_A 164 -PHGPYYLLGYSLGGTLAQGIAARLRARGEQVAFLGLLDTWP 204 (329)
T ss_dssp -SSSCEEEEEETHHHHHHHHHHHHHHHTTCCEEEEEEESCCC
T ss_pred -CCCCEEEEEEccCHHHHHHHHHHHHhcCCcccEEEEeCCCC
Confidence 12579999999999999999988 999999888766543
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=98.14 E-value=0.00061 Score=68.89 Aligned_cols=192 Identities=11% Similarity=0.098 Sum_probs=113.1
Q ss_pred eeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEE
Q 004766 181 SSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMC 260 (732)
Q Consensus 181 ~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~ 260 (732)
.+++|+|||+.|+++.. ....|++++..++ ...+..+. .....++++|||+.++ .
T Consensus 31 eg~~~d~~g~~l~~~~~------------------~~~~i~~~~~~~~----~~~~~~~~--~~~~~l~~~~dg~l~v-~ 85 (296)
T 3e5z_A 31 EGPVYVPARSAVIFSDV------------------RQNRTWAWSDDGQ----LSPEMHPS--HHQNGHCLNKQGHLIA-C 85 (296)
T ss_dssp EEEEEEGGGTEEEEEEG------------------GGTEEEEEETTSC----EEEEESSC--SSEEEEEECTTCCEEE-E
T ss_pred cCCeEeCCCCEEEEEeC------------------CCCEEEEEECCCC----eEEEECCC--CCcceeeECCCCcEEE-E
Confidence 67999999998888742 3347999998765 23343332 2356789999999543 3
Q ss_pred EecCCcceEEEEEEeCCCCCCCcccccccCCCCCcEEeeeccc------ceEEEEEecCCeEEEEeC-------------
Q 004766 261 IEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFD------AQYEVIANDDTVFTFLTN------------- 321 (732)
Q Consensus 261 ~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~------~~~~~~s~dg~~l~~~s~------------- 321 (732)
. .. ...|++++..++. ...+..... .....++++|+ +|+...
T Consensus 86 ~-~~---~~~i~~~d~~~g~--------------~~~~~~~~~~~~~~~~~~i~~d~~G~-l~vtd~~~g~~~~~~~~~~ 146 (296)
T 3e5z_A 86 S-HG---LRRLERQREPGGE--------------WESIADSFEGKKLNSPNDVCLAPDGS-LWFSDPTYGIDKPEEGYGG 146 (296)
T ss_dssp E-TT---TTEEEEECSTTCC--------------EEEEECEETTEECCCCCCEEECTTSC-EEEEECSHHHHCGGGSSCC
T ss_pred e-cC---CCeEEEEcCCCCc--------------EEEEeeccCCCCCCCCCCEEECCCCC-EEEECCccccccccccccc
Confidence 2 21 2458889986543 222221110 01124788875 665321
Q ss_pred -CCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecCCEEEEEEecCCeeEEEEEeCC-CCce---eeeccccccee
Q 004766 322 -KDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLK-NGSL---LHQLPIEIGSV 396 (732)
Q Consensus 322 -~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~~l~~~~~~~g~~~l~~~d~~-~g~~---~~~l~~~~g~v 396 (732)
.......|++++.. +. ...+.... ....++.+++++.+++....+ ..|++++++ +|+. .+.+....+.+
T Consensus 147 ~~~~~~~~l~~~~~~-g~-~~~~~~~~--~~~~gi~~s~dg~~lv~~~~~--~~i~~~~~~~~g~~~~~~~~~~~~~~~p 220 (296)
T 3e5z_A 147 EMELPGRWVFRLAPD-GT-LSAPIRDR--VKPNGLAFLPSGNLLVSDTGD--NATHRYCLNARGETEYQGVHFTVEPGKT 220 (296)
T ss_dssp CCCSSSCEEEEECTT-SC-EEEEECCC--SSEEEEEECTTSCEEEEETTT--TEEEEEEECSSSCEEEEEEEECCSSSCC
T ss_pred cccCCCcEEEEECCC-CC-EEEeecCC--CCCccEEECCCCCEEEEeCCC--CeEEEEEECCCCcCcCCCeEeeCCCCCC
Confidence 01123589999877 43 34443332 445778888866655544433 578999885 4543 12222223344
Q ss_pred eEeecccCCcEEEEEEecCCCCceEEEEECCC
Q 004766 397 NAISARREDSVVFISFTSFLIPGIVYQCNLKT 428 (732)
Q Consensus 397 ~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~ 428 (732)
..+..+++|+ ++++. ...++++|+.+
T Consensus 221 ~~i~~d~~G~-l~v~~-----~~~v~~~~~~g 246 (296)
T 3e5z_A 221 DGLRVDAGGL-IWASA-----GDGVHVLTPDG 246 (296)
T ss_dssp CSEEEBTTSC-EEEEE-----TTEEEEECTTS
T ss_pred CeEEECCCCC-EEEEc-----CCeEEEECCCC
Confidence 5567778886 66554 46899999863
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.14 E-value=0.0022 Score=65.17 Aligned_cols=237 Identities=9% Similarity=0.008 Sum_probs=122.8
Q ss_pred EEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCccc
Q 004766 134 LIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETD 213 (732)
Q Consensus 134 ~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~ 213 (732)
..++.|+|||+ +|..+..+. .|+.+|.+++......... ...++++++||+ |+++....
T Consensus 34 pegia~~~~g~--lyv~d~~~~---~I~~~d~~g~~~~~~~~~~-~p~gia~~~dG~-l~vad~~~-------------- 92 (306)
T 2p4o_A 34 LENLASAPDGT--IFVTNHEVG---EIVSITPDGNQQIHATVEG-KVSGLAFTSNGD-LVATGWNA-------------- 92 (306)
T ss_dssp EEEEEECTTSC--EEEEETTTT---EEEEECTTCCEEEEEECSS-EEEEEEECTTSC-EEEEEECT--------------
T ss_pred cceEEECCCCC--EEEEeCCCC---eEEEECCCCceEEEEeCCC-CceeEEEcCCCc-EEEEeccC--------------
Confidence 45789999998 455554332 6889998765422111222 347899999998 55543211
Q ss_pred CCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCCC
Q 004766 214 SNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLL 293 (732)
Q Consensus 214 ~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~ 293 (732)
...+|++++..++.. ..+...+. ..+..+++..+++. +++. ... ...||.+|..++........ ....
T Consensus 93 --~~~~v~~~d~~~g~~--~~~~~~~~-~~~~~g~~~~~~~~-~~v~-d~~---~g~i~~~d~~~~~~~v~~~~--~~~~ 160 (306)
T 2p4o_A 93 --DSIPVVSLVKSDGTV--ETLLTLPD-AIFLNGITPLSDTQ-YLTA-DSY---RGAIWLIDVVQPSGSIWLEH--PMLA 160 (306)
T ss_dssp --TSCEEEEEECTTSCE--EEEEECTT-CSCEEEEEESSSSE-EEEE-ETT---TTEEEEEETTTTEEEEEEEC--GGGS
T ss_pred --CcceEEEEcCCCCeE--EEEEeCCC-ccccCcccccCCCc-EEEE-ECC---CCeEEEEeCCCCcEeEEEEC--Cccc
Confidence 123577776555432 22333222 22334555555554 3333 221 24689998764210000000 0000
Q ss_pred CcEEeeecccceEEEEEecCCeEEEEeCCCCCCceEEEEeCCC-CC--CceEeccCCCCCceeEEEEecCCEEEEEEecC
Q 004766 294 PFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKE-PN--DWFEVIPEAERDVLESATAVNLNQMIVSYLSD 370 (732)
Q Consensus 294 ~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~-~~--~~~~l~~~~~~~~l~~~~~~~~~~l~~~~~~~ 370 (732)
.......... ..-+++||+.||+.... +.+|+++++++ +. ..+ ++... ....++.+.+++.+++....+
T Consensus 161 -~~~~~~~~~~-pngis~dg~~lyv~d~~---~~~I~~~~~~~~g~~~~~~-~~~~~--~~P~gi~vd~dG~l~va~~~~ 232 (306)
T 2p4o_A 161 -RSNSESVFPA-ANGLKRFGNFLYVSNTE---KMLLLRIPVDSTDKPGEPE-IFVEQ--TNIDDFAFDVEGNLYGATHIY 232 (306)
T ss_dssp -CSSTTCCSCS-EEEEEEETTEEEEEETT---TTEEEEEEBCTTSCBCCCE-EEEES--CCCSSEEEBTTCCEEEECBTT
T ss_pred -cccccCCCCc-CCCcCcCCCEEEEEeCC---CCEEEEEEeCCCCCCCccE-EEecc--CCCCCeEECCCCCEEEEeCCC
Confidence 0000011111 11248899888865432 45799999875 32 112 22211 223567777767787765544
Q ss_pred CeeEEEEEeCCCCceee--ecccccceeeEeecc---cCCcEEEEEEec
Q 004766 371 VKYVLQIRDLKNGSLLH--QLPIEIGSVNAISAR---REDSVVFISFTS 414 (732)
Q Consensus 371 g~~~l~~~d~~~g~~~~--~l~~~~g~v~~~~~s---~d~~~l~~~~ss 414 (732)
.+|.+++.+ |+... .+..+......+.+. +|+++||++.+.
T Consensus 233 --~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 233 --NSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp --CCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred --CeEEEECCC-CCEEEEeecccccCCceEEEEecccCCCCEEEEECCC
Confidence 578999986 76522 344442334566666 788888887654
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=98.08 E-value=0.001 Score=67.31 Aligned_cols=194 Identities=12% Similarity=0.046 Sum_probs=115.7
Q ss_pred eeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEE
Q 004766 181 SSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMC 260 (732)
Q Consensus 181 ~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~ 260 (732)
.++.|+|+++.|+++.. ...+|++++..++.. ..+..+ .....++++|||+.+ +.
T Consensus 16 Egp~w~~~~~~l~~~d~------------------~~~~i~~~d~~~~~~---~~~~~~---~~~~~i~~~~dG~l~-v~ 70 (297)
T 3g4e_A 16 ESPVWEEVSNSLLFVDI------------------PAKKVCRWDSFTKQV---QRVTMD---APVSSVALRQSGGYV-AT 70 (297)
T ss_dssp EEEEEETTTTEEEEEET------------------TTTEEEEEETTTCCE---EEEECS---SCEEEEEEBTTSSEE-EE
T ss_pred cCCeEECCCCEEEEEEC------------------CCCEEEEEECCCCcE---EEEeCC---CceEEEEECCCCCEE-EE
Confidence 57999999889998742 345799999876532 334332 234578999999943 33
Q ss_pred EecCCcceEEEEEEeCCCCCCCcccccccCCCCCcEEeeecc---c-c--eEEEEEecCCeEEEEeCCC--------CCC
Q 004766 261 IEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGF---D-A--QYEVIANDDTVFTFLTNKD--------APK 326 (732)
Q Consensus 261 ~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~---~-~--~~~~~s~dg~~l~~~s~~~--------~~~ 326 (732)
. . ..|+++|.+++. ++.+.... . . .-..++++|+ ||+.+... ...
T Consensus 71 ~-~-----~~l~~~d~~~g~--------------~~~~~~~~~~~~~~~~~di~~d~dG~-l~~~~~~~~~~~~~~~~~~ 129 (297)
T 3g4e_A 71 I-G-----TKFCALNWKEQS--------------AVVLATVDNDKKNNRFNDGKVDPAGR-YFAGTMAEETAPAVLERHQ 129 (297)
T ss_dssp E-T-----TEEEEEETTTTE--------------EEEEEECCTTCSSEEEEEEEECTTSC-EEEEEEECCSBTTBCCTTC
T ss_pred E-C-----CeEEEEECCCCc--------------EEEEEecCCCCCCCCCCCEEECCCCC-EEEecCCcccccccccCCC
Confidence 2 1 358889987642 22222110 0 0 1124778876 67655321 234
Q ss_pred ceEEEEeCCCCCCceEeccCCCCCceeEEEEecCC-EEEEEEecCCeeEEEEEeC--CCCcee--eec-ccc--cceeeE
Q 004766 327 YKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLN-QMIVSYLSDVKYVLQIRDL--KNGSLL--HQL-PIE--IGSVNA 398 (732)
Q Consensus 327 ~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~-~l~~~~~~~g~~~l~~~d~--~~g~~~--~~l-~~~--~g~v~~ 398 (732)
..|++++.++ . ...+.... ....++.+++++ .+|+..... .+|+++++ ++|... +.+ .++ .+....
T Consensus 130 ~~l~~~d~~g-~-~~~~~~~~--~~pngi~~spdg~~lyv~~~~~--~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g 203 (297)
T 3g4e_A 130 GALYSLFPDH-H-VKKYFDQV--DISNGLDWSLDHKIFYYIDSLS--YSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDG 203 (297)
T ss_dssp EEEEEECTTS-C-EEEEEEEE--SBEEEEEECTTSCEEEEEEGGG--TEEEEEEECTTTCCEEEEEEEEECCGGGCEEEE
T ss_pred cEEEEEECCC-C-EEEEeecc--ccccceEEcCCCCEEEEecCCC--CcEEEEeccCCCCcccCcEEEEECCCCCCCCCe
Confidence 6899998753 3 33333322 335678888764 576666544 47888876 456431 111 122 345567
Q ss_pred eecccCCcEEEEEEecCCCCceEEEEECCCCC
Q 004766 399 ISARREDSVVFISFTSFLIPGIVYQCNLKTET 430 (732)
Q Consensus 399 ~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~~ 430 (732)
+..+++|+ ++++... ...++++|+.+++
T Consensus 204 ~~~d~~G~-lwva~~~---~~~v~~~d~~tG~ 231 (297)
T 3g4e_A 204 MCIDAEGK-LWVACYN---GGRVIRLDPVTGK 231 (297)
T ss_dssp EEEBTTSC-EEEEEET---TTEEEEECTTTCC
T ss_pred eEECCCCC-EEEEEcC---CCEEEEEcCCCce
Confidence 77788885 6665433 2579999998775
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=98.06 E-value=0.00086 Score=67.18 Aligned_cols=218 Identities=9% Similarity=0.058 Sum_probs=120.9
Q ss_pred eEEEEEEECCCCceeccc-ccc-eeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCCcccEEEEEECCCCCCCCeE
Q 004766 157 WATIKLMRIEDQIVEADA-LSW-FKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDIL 234 (732)
Q Consensus 157 ~~~i~v~dl~~g~~~~~~-~~~-~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~ 234 (732)
...|+++|.++|+.+-.. ... ....++.++|||+.|+ + .+ ..|+.++. +++ +
T Consensus 14 ~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv-s-~~-------------------~~V~~~d~-~G~----~ 67 (276)
T 3no2_A 14 WNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF-S-YS-------------------KGAKMITR-DGR----E 67 (276)
T ss_dssp CSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE-E-CB-------------------SEEEEECT-TSC----E
T ss_pred CCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE-e-CC-------------------CCEEEECC-CCC----E
Confidence 358999999999865221 111 1236788999998555 3 21 24666665 332 3
Q ss_pred EEecCCC-CeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCCCCcEEeee-c----c-cceEE
Q 004766 235 CWKDPEH-PKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLID-G----F-DAQYE 307 (732)
Q Consensus 235 v~~~~~~-~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l~~-~----~-~~~~~ 307 (732)
+++.... .....++.+++||+.++..... ...++.++.++.. .++.-.. . . .....
T Consensus 68 ~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~----~~~v~~vd~~Gk~-------------l~~~~~~~~~~~~~~~~~~v 130 (276)
T 3no2_A 68 LWNIAAPAGCEMQTARILPDGNALVAWCGH----PSTILEVNMKGEV-------------LSKTEFETGIERPHAQFRQI 130 (276)
T ss_dssp EEEEECCTTCEEEEEEECTTSCEEEEEEST----TEEEEEECTTSCE-------------EEEEEECCSCSSGGGSCSCC
T ss_pred EEEEcCCCCccccccEECCCCCEEEEecCC----CCEEEEEeCCCCE-------------EEEEeccCCCCcccccccCc
Confidence 3332211 1234577899999998754421 2467777764421 0111000 0 0 00111
Q ss_pred EEEecCCeEEEEeCCCCCCceEEEEeCCCCC-CceEeccCCCCCceeEEEEecCCEEEEEEecCCeeEEEEEeCCCCcee
Q 004766 308 VIANDDTVFTFLTNKDAPKYKIIRVDLKEPN-DWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLL 386 (732)
Q Consensus 308 ~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~-~~~~l~~~~~~~~l~~~~~~~~~~l~~~~~~~g~~~l~~~d~~~g~~~ 386 (732)
...++|+.++... .+.+|+.+|.+ ++ .|+.-.+ .. ..++...+++.+++....+ .+|+.+|+++|+.+
T Consensus 131 ~~~~~G~~lv~~~----~~~~v~~~d~~-G~~~w~~~~~---~~-~~~~~~~~~g~~~v~~~~~--~~v~~~d~~tG~~~ 199 (276)
T 3no2_A 131 NKNKKGNYLVPLF----ATSEVREIAPN-GQLLNSVKLS---GT-PFSSAFLDNGDCLVACGDA--HCFVQLNLESNRIV 199 (276)
T ss_dssp EECTTSCEEEEET----TTTEEEEECTT-SCEEEEEECS---SC-CCEEEECTTSCEEEECBTT--SEEEEECTTTCCEE
T ss_pred eECCCCCEEEEec----CCCEEEEECCC-CCEEEEEECC---CC-ccceeEcCCCCEEEEeCCC--CeEEEEeCcCCcEE
Confidence 3567887665332 24579999988 54 2332211 12 2234445556677766555 47999999889876
Q ss_pred eecccc--c----ceeeEeecccCCcEEEEEEecCC------CCceEEEEECCCC
Q 004766 387 HQLPIE--I----GSVNAISARREDSVVFISFTSFL------IPGIVYQCNLKTE 429 (732)
Q Consensus 387 ~~l~~~--~----g~v~~~~~s~d~~~l~~~~ss~~------~p~~~y~~d~~~~ 429 (732)
.++... . ..+..+...++|+.++..+.+-. ...+++.++. +|
T Consensus 200 w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~-~g 253 (276)
T 3no2_A 200 RRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDS-EG 253 (276)
T ss_dssp EEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECT-TS
T ss_pred EEecCCCCCCccccccccceEcCCCCEEEEeccCccccccccCCceEEEECC-CC
Confidence 666421 1 12445556678876665554432 3567888876 44
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=98.05 E-value=0.0012 Score=65.39 Aligned_cols=236 Identities=9% Similarity=0.058 Sum_probs=125.3
Q ss_pred EEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecccccc-eeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcc
Q 004766 134 LIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSW-FKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTET 212 (732)
Q Consensus 134 ~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~~~-~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~ 212 (732)
..++.++|||+ |.++.+..+ ..|+++|..++......... ....++++++||+ |+++..
T Consensus 26 p~~i~~~~~g~-l~v~~~~~~---~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~--------------- 85 (270)
T 1rwi_B 26 PSGVAVDSAGN-VYVTSEGMY---GRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGT-VYVTDF--------------- 85 (270)
T ss_dssp EEEEEECTTCC-EEEEECSSS---CEEEEECC-----EECCCCSCCSCCCEEECTTCC-EEEEET---------------
T ss_pred ccceEECCCCC-EEEEccCCC---CcEEEecCCCcccceEeeCCcCCcceeEECCCCC-EEEEcC---------------
Confidence 45788999998 433143222 37888887765532211111 1236789999987 665531
Q ss_pred cCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCC
Q 004766 213 DSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGL 292 (732)
Q Consensus 213 ~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~ 292 (732)
...|++++..+... ..+... ......+++++++|+ |++... . ...|++++..+..
T Consensus 86 ----~~~i~~~d~~~~~~---~~~~~~-~~~~p~~i~~~~~g~-l~v~~~-~---~~~i~~~~~~~~~------------ 140 (270)
T 1rwi_B 86 ----NNRVVTLAAGSNNQ---TVLPFD-GLNYPEGLAVDTQGA-VYVADR-G---NNRVVKLAAGSKT------------ 140 (270)
T ss_dssp ----TTEEEEECTTCSCC---EECCCC-SCSSEEEEEECTTCC-EEEEEG-G---GTEEEEECTTCCS------------
T ss_pred ----CCEEEEEeCCCceE---eeeecC-CcCCCcceEECCCCC-EEEEEC-C---CCEEEEEECCCce------------
Confidence 33688888765422 112111 112345788999998 443322 2 2457777654421
Q ss_pred CCcEEeeecc-cceEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecCCEEEEEEecCC
Q 004766 293 LPFVKLIDGF-DAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDV 371 (732)
Q Consensus 293 ~~~~~l~~~~-~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~~l~~~~~~~g 371 (732)
......... ...-..++++|+ +|+.... ...|++++.++.. .. ...........++.+.+++.+++....+
T Consensus 141 -~~~~~~~~~~~p~~i~~~~~g~-l~v~~~~---~~~i~~~~~~~~~-~~-~~~~~~~~~p~~i~~d~~g~l~v~~~~~- 212 (270)
T 1rwi_B 141 -QTVLPFTGLNDPDGVAVDNSGN-VYVTDTD---NNRVVKLEAESNN-QV-VLPFTDITAPWGIAVDEAGTVYVTEHNT- 212 (270)
T ss_dssp -CEECCCCSCCSCCCEEECTTCC-EEEEEGG---GTEEEEECTTTCC-EE-ECCCSSCCSEEEEEECTTCCEEEEETTT-
T ss_pred -eEeeccccCCCceeEEEeCCCC-EEEEECC---CCEEEEEecCCCc-eE-eecccCCCCceEEEECCCCCEEEEECCC-
Confidence 000001111 111124677775 6654432 3479999987765 22 2222212446678888766788776544
Q ss_pred eeEEEEEeCCCCceeeecccc-cceeeEeecccCCcEEEEEEecCCCCceEEEEECCC
Q 004766 372 KYVLQIRDLKNGSLLHQLPIE-IGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKT 428 (732)
Q Consensus 372 ~~~l~~~d~~~g~~~~~l~~~-~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~ 428 (732)
..|++++.+ +.....+... ...+..+..++++. ++++-.. -.++..+++..
T Consensus 213 -~~v~~~~~~-~~~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~~---~~~v~~~~~~~ 264 (270)
T 1rwi_B 213 -NQVVKLLAG-STTSTVLPFTGLNTPLAVAVDSDRT-VYVADRG---NDRVVKLTSLE 264 (270)
T ss_dssp -SCEEEECTT-CSCCEECCCCSCSCEEEEEECTTCC-EEEEEGG---GTEEEEECCCG
T ss_pred -CcEEEEcCC-CCcceeeccCCCCCceeEEECCCCC-EEEEECC---CCEEEEEcCCC
Confidence 468899986 4332333222 23455677778875 6655332 34677776543
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=98.05 E-value=0.014 Score=59.54 Aligned_cols=222 Identities=10% Similarity=0.045 Sum_probs=128.8
Q ss_pred EEEEEEECCCCc-eecccccc-eeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCCcccEEEEEECCCCCCCCeEE
Q 004766 158 ATIKLMRIEDQI-VEADALSW-FKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILC 235 (732)
Q Consensus 158 ~~i~v~dl~~g~-~~~~~~~~-~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v 235 (732)
..|+.+|++++. .......+ .....+.|.+.+..||++-. ...+|++.++.+......++
T Consensus 13 ~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~------------------~~~~I~r~~~~g~~~~~~~~ 74 (318)
T 3sov_A 13 RDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDV------------------SEEAIKRTEFNKTESVQNVV 74 (318)
T ss_dssp EEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEET------------------TTTEEEEEETTSSSCCCEEE
T ss_pred CeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEEC------------------CCCcEEEEEccCCCceEEEE
Confidence 689999998764 11111111 12367899998888988732 23478999887653222233
Q ss_pred EecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCCCCcEEee-ecccceE-EEEEecC
Q 004766 236 WKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLI-DGFDAQY-EVIANDD 313 (732)
Q Consensus 236 ~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~-~~~s~dg 313 (732)
...-..+ .++++.+.+..|++.... ...|.++++++.. .+.+. ....... ..+.|.+
T Consensus 75 ~~~l~~p---~glavd~~~g~ly~~d~~----~~~I~~~~~dG~~--------------~~~l~~~~~~~P~giavdp~~ 133 (318)
T 3sov_A 75 VSGLLSP---DGLACDWLGEKLYWTDSE----TNRIEVSNLDGSL--------------RKVLFWQELDQPRAIALDPSS 133 (318)
T ss_dssp EECCSCC---CEEEEETTTTEEEEEETT----TTEEEEEETTSCS--------------CEEEECSSCSSEEEEEEEGGG
T ss_pred cCCCCCc---cEEEEEcCCCeEEEEECC----CCEEEEEECCCCc--------------EEEEEeCCCCCccEEEEeCCC
Confidence 3221222 367888888888776432 3568888987632 22232 2221111 2467777
Q ss_pred CeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEec-CCEEEEEEecCCeeEEEEEeCCCCceeeeccc-
Q 004766 314 TVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVN-LNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPI- 391 (732)
Q Consensus 314 ~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~-~~~l~~~~~~~g~~~l~~~d~~~g~~~~~l~~- 391 (732)
..||+.- .+ ...+|+++++++.. .+.++... -..-.++.+++ ++.||++-... .+|++++++ |...+.+..
T Consensus 134 g~ly~td-~~-~~~~I~r~~~dG~~-~~~~~~~~-l~~Pnglavd~~~~~lY~aD~~~--~~I~~~d~d-G~~~~~~~~~ 206 (318)
T 3sov_A 134 GFMYWTD-WG-EVPKIERAGMDGSS-RFIIINSE-IYWPNGLTLDYEEQKLYWADAKL--NFIHKSNLD-GTNRQAVVKG 206 (318)
T ss_dssp TEEEEEE-CS-SSCEEEEEETTSCS-CEEEECSS-CSCEEEEEEETTTTEEEEEETTT--TEEEEEETT-SCSCEEEECS
T ss_pred CEEEEEe-cC-CCCEEEEEEcCCCC-eEEEEECC-CCCccEEEEeccCCEEEEEECCC--CEEEEEcCC-CCceEEEecC
Confidence 7777643 22 24689999988754 34454432 23456788885 47888876544 689999997 544333321
Q ss_pred ccceeeEeecccCCcEEEEEEecCCCCceEEEEECCCCC
Q 004766 392 EIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 430 (732)
Q Consensus 392 ~~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~~ 430 (732)
......+++. +++.++++ . .....+++++..+|+
T Consensus 207 ~~~~P~glav--~~~~lywt--d-~~~~~V~~~~~~~G~ 240 (318)
T 3sov_A 207 SLPHPFALTL--FEDILYWT--D-WSTHSILACNKYTGE 240 (318)
T ss_dssp CCSCEEEEEE--ETTEEEEE--E-TTTTEEEEEETTTCC
T ss_pred CCCCceEEEE--eCCEEEEE--e-cCCCeEEEEECCCCC
Confidence 1222233443 34556655 2 234678888887665
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.01 E-value=0.00098 Score=65.75 Aligned_cols=193 Identities=12% Similarity=0.009 Sum_probs=109.6
Q ss_pred EeEEECCCCcEEEEEEe-ccCCceEEEEEEECCCCceecccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCccc
Q 004766 135 IKVSVSEDAKYLAYALS-YSGSDWATIKLMRIEDQIVEADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETD 213 (732)
Q Consensus 135 ~~~~~SPDG~~la~~~~-~~G~e~~~i~v~dl~~g~~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~ 213 (732)
.++.++||| + +|..+ ..|. ..|+++|+++|+.+....-+........+++|+.||.+.
T Consensus 24 ~Gl~~~~dg-~-Lyvstg~~~~--s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t----------------- 82 (266)
T 2iwa_A 24 QGLVYAEND-T-LFESTGLYGR--SSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVV----------------- 82 (266)
T ss_dssp EEEEECSTT-E-EEEEECSTTT--CEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEE-----------------
T ss_pred ccEEEeCCC-e-EEEECCCCCC--CEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEE-----------------
Confidence 578899996 4 44443 2222 489999999999664321111112233455677888774
Q ss_pred CCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCCC
Q 004766 214 SNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLL 293 (732)
Q Consensus 214 ~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~ 293 (732)
+....++.++..+...... +..+ .+ .+..+++||++|+.+ + + .+.|+++|.++.+
T Consensus 83 -~~~~~v~viD~~t~~v~~~--i~~g-~~---~g~glt~Dg~~l~vs-~-g---s~~l~viD~~t~~------------- 137 (266)
T 2iwa_A 83 -WLKNIGFIYDRRTLSNIKN--FTHQ-MK---DGWGLATDGKILYGS-D-G---TSILYEIDPHTFK------------- 137 (266)
T ss_dssp -TTCSEEEEEETTTTEEEEE--EECC-SS---SCCEEEECSSSEEEE-C-S---SSEEEEECTTTCC-------------
T ss_pred -ecCCEEEEEECCCCcEEEE--EECC-CC---CeEEEEECCCEEEEE-C-C---CCeEEEEECCCCc-------------
Confidence 3445789999876532211 1111 01 134578899998754 2 3 3579999988732
Q ss_pred CcEEeeecccc-------eEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEec-cC----------CCCCceeEE
Q 004766 294 PFVKLIDGFDA-------QYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVI-PE----------AERDVLESA 355 (732)
Q Consensus 294 ~~~~l~~~~~~-------~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~-~~----------~~~~~l~~~ 355 (732)
....+..+... .. .+. +| ++|. .+.. ...|.++|+++++....+- +. .....+.++
T Consensus 138 v~~~I~Vg~~~~p~~~~nel-e~~-dg-~lyv-n~~~--~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGI 211 (266)
T 2iwa_A 138 LIKKHNVKYNGHRVIRLNEL-EYI-NG-EVWA-NIWQ--TDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGI 211 (266)
T ss_dssp EEEEEECEETTEECCCEEEE-EEE-TT-EEEE-EETT--SSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEE
T ss_pred EEEEEEECCCCcccccceeE-EEE-CC-EEEE-ecCC--CCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEE
Confidence 12222211110 11 233 55 6664 3332 3479999999987222221 11 112467899
Q ss_pred EEecC-CEEEEEEecCCeeEEEEEeCC
Q 004766 356 TAVNL-NQMIVSYLSDVKYVLQIRDLK 381 (732)
Q Consensus 356 ~~~~~-~~l~~~~~~~g~~~l~~~d~~ 381 (732)
.+.++ +++|++.... ++|+++++.
T Consensus 212 a~~~~~~~lfVTgk~~--~~v~~i~l~ 236 (266)
T 2iwa_A 212 AWDQENKRIFVTGKLW--PKLFEIKLH 236 (266)
T ss_dssp EEETTTTEEEEEETTC--SEEEEEEEE
T ss_pred EEcCCCCEEEEECCCC--CeEEEEEEe
Confidence 99975 5677776544 578887765
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.97 E-value=0.0074 Score=63.55 Aligned_cols=206 Identities=8% Similarity=-0.045 Sum_probs=125.5
Q ss_pred EEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecccccc-eeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcc
Q 004766 134 LIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSW-FKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTET 212 (732)
Q Consensus 134 ~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~~~-~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~ 212 (732)
..++.|++.+++|.++ +..+ ..|+.++++++........+ ....++++.+.+..||++-.
T Consensus 118 ~~gl~~d~~~~~ly~~-D~~~---~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~--------------- 178 (386)
T 3v65_B 118 AIALDFHHRRELVFWS-DVTL---DRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDS--------------- 178 (386)
T ss_dssp EEEEEEETTTTEEEEE-ETTT---TEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEET---------------
T ss_pred cEEEEEecCCCeEEEE-eCCC---CcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcC---------------
Confidence 4578899988877655 4333 27899999877532211111 12367888888888888732
Q ss_pred cCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCC
Q 004766 213 DSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGL 292 (732)
Q Consensus 213 ~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~ 292 (732)
...+|++.++.+.. ...+.... .....+++++|++.+|++..... ...|+.+++++..
T Consensus 179 ---~~~~I~~~~~dg~~--~~~l~~~~--l~~P~giavdp~~g~ly~td~~~---~~~I~r~~~dG~~------------ 236 (386)
T 3v65_B 179 ---GTSRIEVANLDGAH--RKVLLWQS--LEKPRAIALHPMEGTIYWTDWGN---TPRIEASSMDGSG------------ 236 (386)
T ss_dssp ---TTTEEEECBTTSCS--CEEEECSS--CSCEEEEEEETTTTEEEEEECSS---SCEEEEEETTSCS------------
T ss_pred ---CCCeEEEEeCCCCc--eEEeecCC--CCCCcEEEEEcCCCeEEEeccCC---CCEEEEEeCCCCC------------
Confidence 23468877776432 22333222 12335788999999988765432 3679999987631
Q ss_pred CCcEEeee-ccc-ceEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecCCEEEEEEecC
Q 004766 293 LPFVKLID-GFD-AQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSD 370 (732)
Q Consensus 293 ~~~~~l~~-~~~-~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~~l~~~~~~~ 370 (732)
.+.+.. +.. ..-..+++++++||+.-. ...+|+++++++.. .+.++... .....++.+.. +.+|++...+
T Consensus 237 --~~~~~~~~~~~PnGlavd~~~~~lY~aD~---~~~~I~~~d~dG~~-~~~~~~~~-~~~P~giav~~-~~ly~td~~~ 308 (386)
T 3v65_B 237 --RRIIADTHLFWPNGLTIDYAGRRMYWVDA---KHHVIERANLDGSH-RKAVISQG-LPHPFAITVFE-DSLYWTDWHT 308 (386)
T ss_dssp --CEEEECSSCSCEEEEEEEGGGTEEEEEET---TTTEEEEECTTSCS-CEEEECSS-CSSEEEEEEET-TEEEEEETTT
T ss_pred --cEEEEECCCCCeeeEEEeCCCCEEEEEEC---CCCEEEEEeCCCCe-eEEEEECC-CCCceEEEEEC-CEEEEeeCCC
Confidence 223322 221 112258888889987533 34589999988654 34454433 23445677755 7888876544
Q ss_pred CeeEEEEEeCCCCceeeecc
Q 004766 371 VKYVLQIRDLKNGSLLHQLP 390 (732)
Q Consensus 371 g~~~l~~~d~~~g~~~~~l~ 390 (732)
.+|.+++..+|+..+.|.
T Consensus 309 --~~V~~~~~~~G~~~~~i~ 326 (386)
T 3v65_B 309 --KSINSANKFTGKNQEIIR 326 (386)
T ss_dssp --TEEEEEETTTCCSCEEEE
T ss_pred --CeEEEEECCCCcceEEEc
Confidence 578888865676645554
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.97 E-value=0.0075 Score=63.54 Aligned_cols=220 Identities=10% Similarity=-0.050 Sum_probs=126.2
Q ss_pred EEEEEECCCCceecccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCCcccEEEEEECCCCCCCCeEEEec
Q 004766 159 TIKLMRIEDQIVEADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKD 238 (732)
Q Consensus 159 ~i~v~dl~~g~~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~ 238 (732)
.|+.+++.++.............+++|.+++..||++-. ...+|+++++.+...+ .+...
T Consensus 97 ~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~------------------~~~~I~r~~~~g~~~~--~~~~~ 156 (386)
T 3v65_B 97 DIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDV------------------TLDRILRANLNGSNVE--EVVST 156 (386)
T ss_dssp CEEEECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEET------------------TTTEEEEEETTSCCEE--EEECS
T ss_pred cceeeccCCCcEEEEecCCCccEEEEEecCCCeEEEEeC------------------CCCcEEEEecCCCCcE--EEEeC
Confidence 688889887663221111112478999998888988732 2347899988754322 23221
Q ss_pred CCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCCCCcEEeee-cccce-EEEEEecCCeE
Q 004766 239 PEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLID-GFDAQ-YEVIANDDTVF 316 (732)
Q Consensus 239 ~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~-~~~~s~dg~~l 316 (732)
.. ....++++++.+..|++.... ...|+++++++.. .+.+.. +.... -..+.|.++.|
T Consensus 157 ~~--~~p~glavd~~~g~lY~~d~~----~~~I~~~~~dg~~--------------~~~l~~~~l~~P~giavdp~~g~l 216 (386)
T 3v65_B 157 GL--ESPGGLAVDWVHDKLYWTDSG----TSRIEVANLDGAH--------------RKVLLWQSLEKPRAIALHPMEGTI 216 (386)
T ss_dssp SC--SCCCCEEEETTTTEEEEEETT----TTEEEECBTTSCS--------------CEEEECSSCSCEEEEEEETTTTEE
T ss_pred CC--CCccEEEEEeCCCeEEEEcCC----CCeEEEEeCCCCc--------------eEEeecCCCCCCcEEEEEcCCCeE
Confidence 11 112367888888888776432 2468888887631 222322 21111 12467777888
Q ss_pred EEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEec-CCEEEEEEecCCeeEEEEEeCCCCceeeecc-cccc
Q 004766 317 TFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVN-LNQMIVSYLSDVKYVLQIRDLKNGSLLHQLP-IEIG 394 (732)
Q Consensus 317 ~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~-~~~l~~~~~~~g~~~l~~~d~~~g~~~~~l~-~~~g 394 (732)
|+.- .+. ..+|+++++++.. .+.++... -..-.++.+++ ++.||++.... .+|++++++ |...+.+. ....
T Consensus 217 y~td-~~~-~~~I~r~~~dG~~-~~~~~~~~-~~~PnGlavd~~~~~lY~aD~~~--~~I~~~d~d-G~~~~~~~~~~~~ 289 (386)
T 3v65_B 217 YWTD-WGN-TPRIEASSMDGSG-RRIIADTH-LFWPNGLTIDYAGRRMYWVDAKH--HVIERANLD-GSHRKAVISQGLP 289 (386)
T ss_dssp EEEE-CSS-SCEEEEEETTSCS-CEEEECSS-CSCEEEEEEEGGGTEEEEEETTT--TEEEEECTT-SCSCEEEECSSCS
T ss_pred EEec-cCC-CCEEEEEeCCCCC-cEEEEECC-CCCeeeEEEeCCCCEEEEEECCC--CEEEEEeCC-CCeeEEEEECCCC
Confidence 7653 322 3689999988765 34454432 23456788884 47888876544 589999987 54323332 1222
Q ss_pred eeeEeecccCCcEEEEEEecCCCCceEEEEECCCCC
Q 004766 395 SVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 430 (732)
Q Consensus 395 ~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~~ 430 (732)
...+++. +++.+|++- + .-..|.+++..+|+
T Consensus 290 ~P~giav--~~~~ly~td--~-~~~~V~~~~~~~G~ 320 (386)
T 3v65_B 290 HPFAITV--FEDSLYWTD--W-HTKSINSANKFTGK 320 (386)
T ss_dssp SEEEEEE--ETTEEEEEE--T-TTTEEEEEETTTCC
T ss_pred CceEEEE--ECCEEEEee--C-CCCeEEEEECCCCc
Confidence 2334444 344565542 2 33577888865554
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.95 E-value=0.0098 Score=61.66 Aligned_cols=220 Identities=10% Similarity=-0.045 Sum_probs=125.6
Q ss_pred EEEEEECCCCceecccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCCcccEEEEEECCCCCCCCeEEEec
Q 004766 159 TIKLMRIEDQIVEADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKD 238 (732)
Q Consensus 159 ~i~v~dl~~g~~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~ 238 (732)
.|+.+++++..............+++|.+.+..||++-. ...+|+++++.+...+ .+...
T Consensus 54 ~I~~i~~~g~~~~~~~~~~~~~~~l~~d~~~~~ly~~D~------------------~~~~I~r~~~~g~~~~--~~~~~ 113 (349)
T 3v64_C 54 DIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDV------------------TLDRILRANLNGSNVE--EVVST 113 (349)
T ss_dssp CEEEECTTSCCEEEEECSCSCEEEEEEETTTTEEEEEET------------------TTTEEEEEETTSCSCE--EEECS
T ss_pred ceEEEeCCCCeeEEeecCCCceEEEEEeccccEEEEEec------------------cCCceEEEecCCCCce--EEEeC
Confidence 588888877653221111112478999998888988732 2347899988765322 23322
Q ss_pred CCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCCCCcEEeee-cccce-EEEEEecCCeE
Q 004766 239 PEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLID-GFDAQ-YEVIANDDTVF 316 (732)
Q Consensus 239 ~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~-~~~~s~dg~~l 316 (732)
.. ....++++.+.++.|++.... ...|+++++++.. .+.+.. +.... -..+.|.++.|
T Consensus 114 ~~--~~p~glavd~~~g~ly~~d~~----~~~I~~~~~dG~~--------------~~~l~~~~l~~P~~iavdp~~g~l 173 (349)
T 3v64_C 114 GL--ESPGGLAVDWVHDKLYWTDSG----TSRIEVANLDGAH--------------RKVLLWQSLEKPRAIALHPMEGTI 173 (349)
T ss_dssp SC--SCCCEEEEETTTTEEEEEETT----TTEEEEEETTSCS--------------CEEEECTTCSCEEEEEEETTTTEE
T ss_pred CC--CCccEEEEecCCCeEEEEcCC----CCeEEEEcCCCCc--------------eEEEEeCCCCCcceEEEecCcCeE
Confidence 11 112467888888888776432 3468889987632 222322 21111 12467777778
Q ss_pred EEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEec-CCEEEEEEecCCeeEEEEEeCCCCceeeec-ccccc
Q 004766 317 TFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVN-LNQMIVSYLSDVKYVLQIRDLKNGSLLHQL-PIEIG 394 (732)
Q Consensus 317 ~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~-~~~l~~~~~~~g~~~l~~~d~~~g~~~~~l-~~~~g 394 (732)
|+.- ... ..+|+++++++.. .+.++... -..-.++.+++ ++.||++.... .+|++++++ |...+.+ .....
T Consensus 174 y~td-~~~-~~~I~r~~~dG~~-~~~~~~~~-~~~PnGla~d~~~~~lY~aD~~~--~~I~~~~~d-G~~~~~~~~~~~~ 246 (349)
T 3v64_C 174 YWTD-WGN-TPRIEASSMDGSG-RRIIADTH-LFWPNGLTIDYAGRRMYWVDAKH--HVIERANLD-GSHRKAVISQGLP 246 (349)
T ss_dssp EEEE-CSS-SCEEEEEETTSCS-CEESCCSS-CSCEEEEEEETTTTEEEEEETTT--TEEEEEETT-SCSCEEEECSSCS
T ss_pred EEec-cCC-CCEEEEEeCCCCC-cEEEEECC-CCCcceEEEeCCCCEEEEEECCC--CEEEEEeCC-CCceEEEEeCCCC
Confidence 7653 322 3689999988754 34444432 23456788884 47788876544 589999987 5432333 22222
Q ss_pred eeeEeecccCCcEEEEEEecCCCCceEEEEECCCCC
Q 004766 395 SVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 430 (732)
Q Consensus 395 ~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~~ 430 (732)
...+++. +++.++++- + .-..+.+++..+|+
T Consensus 247 ~P~giav--~~~~ly~td--~-~~~~V~~~~~~~G~ 277 (349)
T 3v64_C 247 HPFAITV--FEDSLYWTD--W-HTKSINSANKFTGK 277 (349)
T ss_dssp SEEEEEE--ETTEEEEEE--T-TTTEEEEEETTTCC
T ss_pred CceEEEE--ECCEEEEec--C-CCCeEEEEEccCCC
Confidence 2334444 334555542 1 23567777755554
|
| >2hih_A Lipase 46 kDa form; A1 phospholipase, phospholipid binding, hydrolase; 2.86A {Staphylococcus hyicus} | Back alignment and structure |
|---|
Probab=97.94 E-value=3.3e-05 Score=82.01 Aligned_cols=115 Identities=11% Similarity=0.046 Sum_probs=65.8
Q ss_pred CCccEEEEEcCCCCccC------CCCcCh---hHHHHHHhcCcEEEEEcccCCCCCchhHH------hcccccCCcc---
Q 004766 479 GSHPCLLYGYGGFNISV------TPSFSV---SRTILMRHLGAVFCIANIRGGGEYGEEWH------KGGALAKKQN--- 540 (732)
Q Consensus 479 ~~~P~vv~~hG~~~~~~------~~~~~~---~~~~~l~~~G~~v~~~~~rG~g~~g~~~~------~~~~~~~~~~--- 540 (732)
+..|.||++||..+... ...|.. .+...|.++||.|+++|+||.|.....-. ..+....+..
T Consensus 50 ~~~~pVVLvHG~~g~~~~~~~~~~~~W~~~~~~l~~~L~~~Gy~Via~Dl~G~G~S~~~~~~l~~~i~~g~g~sg~~~~~ 129 (431)
T 2hih_A 50 KNKDPFVFVHGFTGFVGEVAAKGENYWGGTKANLRNHLRKAGYETYEASVSALASNHERAVELYYYLKGGRVDYGAAHSE 129 (431)
T ss_dssp SCSSCEEEECCTTCCCGGGSCTTCCTTTTTTCCHHHHHHHTTCCEEEECCCSSSCHHHHHHHHHHHHHCEEEECCHHHHH
T ss_pred CCCCeEEEECCCCCCcccccccchhhhhccHHHHHHHHHhCCCEEEEEcCCCCCCCccchHHhhhhhhhccccccccccc
Confidence 45677999999877421 233431 34566666899999999999765321100 0000000000
Q ss_pred --HHHHHHHHHHHHHHcCCCC-CCcEEEEecChhHHHHHHHHhh--------------------------CCCeeeEEEE
Q 004766 541 --CFDDFISASEYLISAGYTQ-SRKLCIEGGSNGGLLVGACINQ--------------------------RPDLFGCALA 591 (732)
Q Consensus 541 --~~~D~~~~~~~l~~~~~~d-~~~i~i~G~S~GG~l~~~~~~~--------------------------~p~~f~a~v~ 591 (732)
.++++.+.+..+++. .. .+++.++||||||+++..++.. +|++++.+|+
T Consensus 130 ~~~~~~~a~dl~~ll~~--l~~~~kv~LVGHSmGG~iA~~lA~~l~~~~~~~~~~~~~~gg~i~~l~~g~~p~~V~slv~ 207 (431)
T 2hih_A 130 KYGHERYGKTYEGVLKD--WKPGHPVHFIGHSMGGQTIRLLEHYLRFGDKAEIAYQQQHGGIISELFKGGQDNMVTSITT 207 (431)
T ss_dssp HHTCCSEEEEECCSCTT--CBTTBCEEEEEETTHHHHHHHHHHHHHHCCHHHHHHHHHHCSCCCHHHHCCCCSCEEEEEE
T ss_pred cCCHHHHHHHHHHHHHH--hCCCCCEEEEEEChhHHHHHHHHHHhccccccchhhccccccccccccccCcccceeEEEE
Confidence 000000000001111 11 2689999999999999988765 6889999887
Q ss_pred cCCc
Q 004766 592 HVGV 595 (732)
Q Consensus 592 ~~p~ 595 (732)
..+.
T Consensus 208 i~tP 211 (431)
T 2hih_A 208 IATP 211 (431)
T ss_dssp ESCC
T ss_pred ECCC
Confidence 7653
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=97.92 E-value=0.0015 Score=67.67 Aligned_cols=250 Identities=8% Similarity=0.014 Sum_probs=125.8
Q ss_pred EEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceeccc----c---cceeeeeEEEEeCCcEEEEEEecCCCCCCCC
Q 004766 134 LIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADA----L---SWFKFSSIAWTHDSKGFFYSRYPAPKEGKDM 206 (732)
Q Consensus 134 ~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~----~---~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~ 206 (732)
..++.+||||+.++ +....+....+|+.++ +|+..+.. . ......+++++|||+ |+++-...
T Consensus 19 p~~va~~~~g~~~v-~~~~~~~~~~~l~~~~--~g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~-L~v~D~g~------- 87 (343)
T 2qe8_A 19 PGNITLTPDGRLFL-SLHQFYQPEMQVAELT--QDGLIPFPPQSGNAIITFDTVLGIKSDGNGI-VWMLDNGN------- 87 (343)
T ss_dssp EEEEEECTTSCEEE-EECGGGCCSCSEEEEE--TTEEEESCCCCSSCCCCCSCEEEEEECSSSE-EEEEECHH-------
T ss_pred cceEEECCCCCEEE-EeCCCCCCceEEEEEC--CCCeecCCCcccCcccceeEeeEEEEcCCCc-EEEEcCCC-------
Confidence 45888999998533 3222111114677777 56543110 0 111246889999985 66552110
Q ss_pred CCCCcccCCcccEEEEEECCCCCCCCeEEEecCC----CCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCC
Q 004766 207 DAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPE----HPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEG 282 (732)
Q Consensus 207 ~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~----~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~ 282 (732)
......+|+++++.++... ..+..+. ...+..++++++++..+++..... .....|+++|+.++...
T Consensus 88 ------~~~~~~~i~~~d~~tg~~~--~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~-~~~~~i~v~d~~~g~~~ 158 (343)
T 2qe8_A 88 ------QSKSVPKLVAWDTLNNQLS--RVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAP-DDKAALIRVDLQTGLAA 158 (343)
T ss_dssp ------HHTSCCEEEEEETTTTEEE--EEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCS-GGGCEEEEEETTTCCEE
T ss_pred ------CcCCCCeEEEEECCCCeEE--EEEECChhhcccccccceEEEecCCCEEEEEcCcc-CCCCeEEEEECCCCCEE
Confidence 0001357899998765421 2222211 112335788998877776654311 12456889998764310
Q ss_pred cccccccC-CCC--CcEEeeec--------------c--cceEEEEEecCCeEEEEeCCCCCCceEEEEeCC---CCC--
Q 004766 283 LEGFKKRD-GLL--PFVKLIDG--------------F--DAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLK---EPN-- 338 (732)
Q Consensus 283 ~~~~~~~~-~~~--~~~~l~~~--------------~--~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~---~~~-- 338 (732)
++.... ... +......+ + ...-..++|||+.||+..... .+|++++.. .+.
T Consensus 159 --r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~---~~l~~~~~~~~~~~~~~ 233 (343)
T 2qe8_A 159 --RVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHS---TSMYRIKSADLSNLQLT 233 (343)
T ss_dssp --EECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSC---SEEEEEEHHHHTCTTCC
T ss_pred --EEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCC---CeEEEEEHHHhcCCCCC
Confidence 000000 000 00000000 0 011125899999888765432 379998742 111
Q ss_pred ------CceEeccCCCCCceeEEEEecCCEEEEEEecCCeeEEEEEeCCCCceeeecccc-cceeeEeecccCCcEEEEE
Q 004766 339 ------DWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIE-IGSVNAISARREDSVVFIS 411 (732)
Q Consensus 339 ------~~~~l~~~~~~~~l~~~~~~~~~~l~~~~~~~g~~~l~~~d~~~g~~~~~l~~~-~g~v~~~~~s~d~~~l~~~ 411 (732)
.+. ...+. ....++.+.+++.++++...+ ..|.+||.++|+....+..+ ......+.+++++. ++++
T Consensus 234 ~~~~~~~~~-~~g~~--g~pdgia~d~~G~l~va~~~~--~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~-l~v~ 307 (343)
T 2qe8_A 234 DAELGSKIE-RYSEK--PICDGISIDKDHNIYVGDLAH--SAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGY-LYFD 307 (343)
T ss_dssp HHHHHTTCE-EEEEC--CSCSCEEECTTCCEEEEEGGG--TEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSC-EEEE
T ss_pred hhhhhcceE-ecccC--CCCceEEECCCCCEEEEccCC--CeEEEEECCCCCEEEEEECCceecCCeeEECCCCc-EEEE
Confidence 011 11111 123467777767788876555 57999998447642222223 22345666777654 6665
Q ss_pred Eec
Q 004766 412 FTS 414 (732)
Q Consensus 412 ~ss 414 (732)
.+.
T Consensus 308 ~~~ 310 (343)
T 2qe8_A 308 CNQ 310 (343)
T ss_dssp ECC
T ss_pred eCc
Confidence 543
|
| >3tjm_A Fatty acid synthase; thioesterase domain, fatty acid synthesis, hydrolase-hydrola inhibitor complex; HET: 7FA; 1.48A {Homo sapiens} PDB: 1xkt_A | Back alignment and structure |
|---|
Probab=97.91 E-value=2.4e-05 Score=78.99 Aligned_cols=95 Identities=9% Similarity=-0.088 Sum_probs=60.6
Q ss_pred CCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCccHHHHHHHHHHHHHHcCCC
Q 004766 479 GSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYT 558 (732)
Q Consensus 479 ~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~ 558 (732)
+..|.||++||..+.. ..|.. +...| .+.|+.++.++.. ...+++++.+.+..+++.-.
T Consensus 22 ~~~~~l~~~hg~~~~~--~~~~~-~~~~L---~~~v~~~d~~~~~--------------~~~~~~~~a~~~~~~i~~~~- 80 (283)
T 3tjm_A 22 SSERPLFLVHPIEGST--TVFHS-LASRL---SIPTYGLQCTRAA--------------PLDSIHSLAAYYIDCIRQVQ- 80 (283)
T ss_dssp SSSCCEEEECCTTCCS--GGGHH-HHHHC---SSCEEEECCCTTS--------------CCSCHHHHHHHHHHHHTTTC-
T ss_pred CCCCeEEEECCCCCCH--HHHHH-HHHhc---CceEEEEecCCCC--------------CCCCHHHHHHHHHHHHHHhC-
Confidence 4567889999987753 23332 23333 3889999986421 12345555554444443311
Q ss_pred CCCcEEEEecChhHHHHHHHHhhC---CCeee---EEEEcCC
Q 004766 559 QSRKLCIEGGSNGGLLVGACINQR---PDLFG---CALAHVG 594 (732)
Q Consensus 559 d~~~i~i~G~S~GG~l~~~~~~~~---p~~f~---a~v~~~p 594 (732)
..+++.++|||+||.++..++.+. |+... .+|+..+
T Consensus 81 ~~~~~~l~GhS~Gg~va~~~a~~~~~~~~~v~~~~~lvlid~ 122 (283)
T 3tjm_A 81 PEGPYRVAGYSYGACVAFEMCSQLQAQQSPAPTHNSLFLFDG 122 (283)
T ss_dssp CSSCCEEEEETHHHHHHHHHHHHHHHHHTTSCCCCEEEEESC
T ss_pred CCCCEEEEEECHhHHHHHHHHHHHHHcCCCCCccceEEEEcC
Confidence 126899999999999999888754 77776 6665543
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=97.91 E-value=0.0043 Score=62.05 Aligned_cols=238 Identities=11% Similarity=0.052 Sum_probs=125.9
Q ss_pred EEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecccc------cceeeeeEEEEeCCcEEEEEEecCCCCCCCC
Q 004766 133 ALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADAL------SWFKFSSIAWTHDSKGFFYSRYPAPKEGKDM 206 (732)
Q Consensus 133 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~------~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~ 206 (732)
...++.++|||+. |+.+... ..|+++|.++........ ......++++++.+..|+++..
T Consensus 31 ~p~~v~~~~~g~l--~v~~~~~---~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~--------- 96 (286)
T 1q7f_A 31 EPSGVAVNAQNDI--IVADTNN---HRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTER--------- 96 (286)
T ss_dssp CEEEEEECTTCCE--EEEEGGG---TEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEEC---------
T ss_pred CCceEEECCCCCE--EEEECCC---CEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcC---------
Confidence 3567889999973 3333222 378999987433211110 0012357788533335666531
Q ss_pred CCCCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccc
Q 004766 207 DAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGF 286 (732)
Q Consensus 207 ~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~ 286 (732)
.....|++++.. +. .+..+... ......+++++|||+ |++... . ...|++++.++..
T Consensus 97 --------~~~~~i~~~d~~-g~--~~~~~~~~-~~~~~~~i~~~~~g~-l~v~~~-~---~~~i~~~~~~g~~------ 153 (286)
T 1q7f_A 97 --------SPTHQIQIYNQY-GQ--FVRKFGAT-ILQHPRGVTVDNKGR-IIVVEC-K---VMRVIIFDQNGNV------ 153 (286)
T ss_dssp --------GGGCEEEEECTT-SC--EEEEECTT-TCSCEEEEEECTTSC-EEEEET-T---TTEEEEECTTSCE------
T ss_pred --------CCCCEEEEECCC-Cc--EEEEecCc-cCCCceEEEEeCCCC-EEEEEC-C---CCEEEEEcCCCCE------
Confidence 113467777732 21 11122211 112345789999997 433322 1 2468888865421
Q ss_pred cccCCCCCcEEeee--ccc-ceEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecCCEE
Q 004766 287 KKRDGLLPFVKLID--GFD-AQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQM 363 (732)
Q Consensus 287 ~~~~~~~~~~~l~~--~~~-~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~~l 363 (732)
...+.. ... .....++++|+ +|+.... ...|++++.++.. ...+..........++.+++++.+
T Consensus 154 --------~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~~---~~~i~~~~~~g~~-~~~~~~~g~~~~p~~i~~d~~G~l 220 (286)
T 1q7f_A 154 --------LHKFGCSKHLEFPNGVVVNDKQE-IFISDNR---AHCVKVFNYEGQY-LRQIGGEGITNYPIGVGINSNGEI 220 (286)
T ss_dssp --------EEEEECTTTCSSEEEEEECSSSE-EEEEEGG---GTEEEEEETTCCE-EEEESCTTTSCSEEEEEECTTCCE
T ss_pred --------EEEeCCCCccCCcEEEEECCCCC-EEEEECC---CCEEEEEcCCCCE-EEEEccCCccCCCcEEEECCCCCE
Confidence 112211 111 11124677764 6654322 3578999975532 333322221134667888876778
Q ss_pred EEEEecCCeeEEEEEeCCCCceeeeccccc--ceeeEeecccCCcEEEEEEecCCCCceEEEEECC
Q 004766 364 IVSYLSDVKYVLQIRDLKNGSLLHQLPIEI--GSVNAISARREDSVVFISFTSFLIPGIVYQCNLK 427 (732)
Q Consensus 364 ~~~~~~~g~~~l~~~d~~~g~~~~~l~~~~--g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~ 427 (732)
++....++ ..|.+|+.+ |+.+..+..+. ..+..+.+++++. ++++ +. -.++..++..
T Consensus 221 ~v~~~~~~-~~i~~~~~~-g~~~~~~~~~~~~~~~~~i~~~~~g~-l~vs-~~---~~~v~v~~~~ 279 (286)
T 1q7f_A 221 LIADNHNN-FNLTIFTQD-GQLISALESKVKHAQCFDVALMDDGS-VVLA-SK---DYRLYIYRYV 279 (286)
T ss_dssp EEEECSSS-CEEEEECTT-SCEEEEEEESSCCSCEEEEEEETTTE-EEEE-ET---TTEEEEEECS
T ss_pred EEEeCCCC-EEEEEECCC-CCEEEEEcccCCCCcceeEEECCCCc-EEEE-CC---CCeEEEEEcc
Confidence 87765442 379999975 76656665432 2344677778875 6665 32 2567777654
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=97.88 E-value=0.0022 Score=62.53 Aligned_cols=193 Identities=9% Similarity=0.060 Sum_probs=117.0
Q ss_pred eeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEE
Q 004766 181 SSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMC 260 (732)
Q Consensus 181 ~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~ 260 (732)
.++.|+ |+ .||.+.... ....|.++++.+++...... .+. ..| ....+++|..|+..
T Consensus 46 qGL~~~-~~-~LyestG~~----------------g~S~v~~vD~~Tgkv~~~~~--l~~-~~F--geGit~~g~~ly~l 102 (262)
T 3nol_A 46 EGFFYR-NG-YFYESTGLN----------------GRSSIRKVDIESGKTLQQIE--LGK-RYF--GEGISDWKDKIVGL 102 (262)
T ss_dssp EEEEEE-TT-EEEEEEEET----------------TEEEEEEECTTTCCEEEEEE--CCT-TCC--EEEEEEETTEEEEE
T ss_pred ceEEEE-CC-EEEEECCCC----------------CCceEEEEECCCCcEEEEEe--cCC-ccc--eeEEEEeCCEEEEE
Confidence 578888 65 666654221 23478889998875432221 111 112 34466778888666
Q ss_pred EecCCcceEEEEEEeCCCCCCCcccccccCCCCCcEEeeecccceEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCc
Q 004766 261 IEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDW 340 (732)
Q Consensus 261 ~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~ 340 (732)
... .+.++++|.++.+ ....+..+. ..+ .+++||++||+ ++ + ..+|+.+|.++.+..
T Consensus 103 tw~----~~~v~v~D~~t~~-------------~~~ti~~~~-eG~-glt~dg~~L~~-Sd--G-s~~i~~iDp~T~~v~ 159 (262)
T 3nol_A 103 TWK----NGLGFVWNIRNLR-------------QVRSFNYDG-EGW-GLTHNDQYLIM-SD--G-TPVLRFLDPESLTPV 159 (262)
T ss_dssp ESS----SSEEEEEETTTCC-------------EEEEEECSS-CCC-CEEECSSCEEE-CC--S-SSEEEEECTTTCSEE
T ss_pred Eee----CCEEEEEECccCc-------------EEEEEECCC-Cce-EEecCCCEEEE-EC--C-CCeEEEEcCCCCeEE
Confidence 442 3579999998742 122222221 112 25678888775 44 2 357999999887622
Q ss_pred eEecc-C--CCCCceeEEEEecCCEEEEEEecCCeeEEEEEeCCCCceeeecccc------------cceeeEeecccCC
Q 004766 341 FEVIP-E--AERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIE------------IGSVNAISARRED 405 (732)
Q Consensus 341 ~~l~~-~--~~~~~l~~~~~~~~~~l~~~~~~~g~~~l~~~d~~~g~~~~~l~~~------------~g~v~~~~~s~d~ 405 (732)
..+.- . .+-..+..+.+.+ +.+++..... ..|.++|+++|+.+..|.++ .....+++.++++
T Consensus 160 ~~I~V~~~g~~~~~lNELe~~~-G~lyan~w~~--~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~ 236 (262)
T 3nol_A 160 RTITVTAHGEELPELNELEWVD-GEIFANVWQT--NKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEH 236 (262)
T ss_dssp EEEECEETTEECCCEEEEEEET-TEEEEEETTS--SEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTT
T ss_pred EEEEeccCCccccccceeEEEC-CEEEEEEccC--CeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCC
Confidence 22211 1 1113345567775 7888766444 48999999999987777653 1234678888888
Q ss_pred cEEEEEEecCCCCceEEEEE
Q 004766 406 SVVFISFTSFLIPGIVYQCN 425 (732)
Q Consensus 406 ~~l~~~~ss~~~p~~~y~~d 425 (732)
++++++--.| +.+|++.
T Consensus 237 ~~lfVTGK~W---p~~~ev~ 253 (262)
T 3nol_A 237 HRLFVTGKLW---PKVFEIT 253 (262)
T ss_dssp TEEEEEETTC---SEEEEEE
T ss_pred CEEEEECCCC---CceEEEE
Confidence 8888776555 4566654
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.88 E-value=0.01 Score=58.09 Aligned_cols=203 Identities=12% Similarity=0.047 Sum_probs=119.3
Q ss_pred EEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceeccc-ccc-eeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCC
Q 004766 133 ALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADA-LSW-FKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGT 210 (732)
Q Consensus 133 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~-~~~-~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~ 210 (732)
.+++++++||++.|..+.+. ...|+.+|+. |+.+... ..+ .+..++++.+||+ ++++.
T Consensus 28 ~lSGla~~~~~~~L~aV~d~----~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~-~~vs~-------------- 87 (255)
T 3qqz_A 28 NISSLTWSAQSNTLFSTINK----PAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQ-FVISD-------------- 87 (255)
T ss_dssp CEEEEEEETTTTEEEEEEET----TEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTE-EEEEE--------------
T ss_pred CcceeEEeCCCCEEEEEECC----CCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCE-EEEEE--------------
Confidence 37899999999888776654 2579999998 6654321 221 2457899998874 44442
Q ss_pred cccCCcccEEEEEECCCCCC-CCeEEEe-----cCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcc
Q 004766 211 ETDSNLYHEFYYHFLGTKQS-EDILCWK-----DPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLE 284 (732)
Q Consensus 211 ~~~~~~~~~v~~~~lgt~~~-~~~~v~~-----~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~ 284 (732)
.+..+++.++++.... ..+.... .+.+.+ +.+++++|+++.|++...+. ...||.++ +....
T Consensus 88 ----E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g-~EGLA~d~~~~~L~va~E~~---p~~i~~~~--g~~~~-- 155 (255)
T 3qqz_A 88 ----ERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCG-FEGLAYSRQDHTFWFFKEKN---PIEVYKVN--GLLSS-- 155 (255)
T ss_dssp ----TTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSC-CEEEEEETTTTEEEEEEESS---SEEEEEEE--STTCS--
T ss_pred ----CCCCcEEEEEcCCCCeeeeeeeeccccccccccCC-cceEEEeCCCCEEEEEECcC---CceEEEEc--ccccC--
Confidence 1235677777765432 1011111 111222 35899999999988765443 35688887 11100
Q ss_pred cccccCCCCCcEEee--------ecccceEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCC-CceEeccCCC-----CC
Q 004766 285 GFKKRDGLLPFVKLI--------DGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPN-DWFEVIPEAE-----RD 350 (732)
Q Consensus 285 ~~~~~~~~~~~~~l~--------~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~-~~~~l~~~~~-----~~ 350 (732)
.....+. .-.+..-..+.|..++||+++... ..|+.+|.++.- ....|.+... -.
T Consensus 156 --------~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s---~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~ 224 (255)
T 3qqz_A 156 --------NELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHES---RALQEVTLVGEVIGEMSLTKGSRGLSHNIK 224 (255)
T ss_dssp --------SCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTT---TEEEEECTTCCEEEEEECSTTGGGCSSCCC
T ss_pred --------CceeeecchhhccccccCCceeEEEcCCCCeEEEEECCC---CeEEEEcCCCCEEEEEEcCCccCCcccccC
Confidence 0011110 011222234778888999998764 478999977642 1222332110 12
Q ss_pred ceeEEEEecCCEEEEEEecCCeeEEEEEeCC
Q 004766 351 VLESATAVNLNQMIVSYLSDVKYVLQIRDLK 381 (732)
Q Consensus 351 ~l~~~~~~~~~~l~~~~~~~g~~~l~~~d~~ 381 (732)
.-+++++.+++.+|+....| .+|++...
T Consensus 225 qpEGia~d~~G~lyIvsE~n---~~y~f~~~ 252 (255)
T 3qqz_A 225 QAEGVAMDASGNIYIVSEPN---RFYRFTPQ 252 (255)
T ss_dssp SEEEEEECTTCCEEEEETTT---EEEEEEC-
T ss_pred CCCeeEECCCCCEEEEcCCc---eEEEEEec
Confidence 45889998877888886655 78888754
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=97.87 E-value=0.0016 Score=68.64 Aligned_cols=235 Identities=11% Similarity=0.073 Sum_probs=121.2
Q ss_pred C--CCCcEEEEEEeccCCceEEEEEEECCCCc---eecccc---------cceeeeeEEEEeCCcEEEEEEecCCCCCCC
Q 004766 140 S--EDAKYLAYALSYSGSDWATIKLMRIEDQI---VEADAL---------SWFKFSSIAWTHDSKGFFYSRYPAPKEGKD 205 (732)
Q Consensus 140 S--PDG~~la~~~~~~G~e~~~i~v~dl~~g~---~~~~~~---------~~~~~~~~~WspDg~~l~y~~~~~~~~~~~ 205 (732)
| +|+++|....- ++ .+|+|+|+.+.. .+..++ .......+.-+||| |+++......
T Consensus 90 ~~~~~r~~l~v~~l--~s--~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG--i~Vs~~g~~~---- 159 (462)
T 2ece_A 90 KPNIERRFLIVPGL--RS--SRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA--IYISALGNEE---- 159 (462)
T ss_dssp CTTCCSCEEEEEBT--TT--CCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC--EEEEEEEETT----
T ss_pred CCCccCCEEEEccC--CC--CeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe--EEEEcCCCcC----
Confidence 7 88988765532 22 489999997551 111222 11123456778999 6665543311
Q ss_pred CCCCCcccCCcccEEEEEECCCCCCCCeEEEecC-CCCeeEEEeEEecCCcEEEEEEec------C----C----cceEE
Q 004766 206 MDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDP-EHPKYIFSGHVTEDGQYLVMCIEE------N----C----DPVNK 270 (732)
Q Consensus 206 ~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~-~~~~~~~~~~~SpDg~~l~~~~~~------~----~----~~~~~ 270 (732)
...+..|.+.+..|.+.. --++.. ....+.+++.|+||++.++.+.+. . . ....+
T Consensus 160 --------g~~~g~v~vlD~~T~~v~--~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~ 229 (462)
T 2ece_A 160 --------GEGPGGILMLDHYSFEPL--GKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNR 229 (462)
T ss_dssp --------SCSCCEEEEECTTTCCEE--EECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCE
T ss_pred --------CCCCCeEEEEECCCCeEE--EEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCE
Confidence 234457888887765421 112211 112344568899999966544211 0 0 12467
Q ss_pred EEEEeCCCCCCCcccccccCCCCCcEEeeecccceE----E-EEEecCCeEEEEeC-----CCCCCceEEEEeCCCCCCc
Q 004766 271 VYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQY----E-VIANDDTVFTFLTN-----KDAPKYKIIRVDLKEPNDW 340 (732)
Q Consensus 271 l~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~-~~s~dg~~l~~~s~-----~~~~~~~l~~~d~~~~~~~ 340 (732)
|.++|+++++ ....+..+..... . .++|+|+.+|+... .. ..|+.+..+.+. |
T Consensus 230 V~v~D~~~~k-------------~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Ls---s~V~v~~~d~g~-~ 292 (462)
T 2ece_A 230 IHFWDLRKRK-------------RIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLS---SSIWLWFYEDGK-W 292 (462)
T ss_dssp EEEEETTTTE-------------EEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCC---EEEEEEEEETTE-E
T ss_pred EEEEECCCCc-------------EeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCC---ceEEEEEecCCc-e
Confidence 9999998632 0122222211111 1 14889988887654 32 244433222221 1
Q ss_pred eE--e--ccC---------CC------CCceeEEEEecCCEEEEEEecCCeeEEEEEeCCCC---ceeeecccc-c----
Q 004766 341 FE--V--IPE---------AE------RDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNG---SLLHQLPIE-I---- 393 (732)
Q Consensus 341 ~~--l--~~~---------~~------~~~l~~~~~~~~~~l~~~~~~~g~~~l~~~d~~~g---~~~~~l~~~-~---- 393 (732)
+. + ++. .+ .....++.+++|++.++.+.+.. ..|.++|+.+. +.+..+... .
T Consensus 293 ~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~-d~VavfdV~d~~~~~lv~~I~tGG~~~~~ 371 (462)
T 2ece_A 293 NAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGI-GEVRQYDISNPFKPVLTGKVKLGGIFHRA 371 (462)
T ss_dssp EEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTT-TEEEEEECSSTTSCEEEEEEECBTTTTCB
T ss_pred eEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCC-CEEEEEEecCCCCcEEEEEEEeCCeeccc
Confidence 11 1 011 00 12356788888655444444432 57888887422 223333322 0
Q ss_pred ---------ceeeEeecccCCcEEEEEE
Q 004766 394 ---------GSVNAISARREDSVVFISF 412 (732)
Q Consensus 394 ---------g~v~~~~~s~d~~~l~~~~ 412 (732)
+.-..+.+++||+.|+++-
T Consensus 372 ~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 372 DHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred cccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 1234677899999888765
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=97.86 E-value=0.00046 Score=70.69 Aligned_cols=203 Identities=9% Similarity=-0.047 Sum_probs=110.8
Q ss_pred eeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEec--CCcEE
Q 004766 180 FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTE--DGQYL 257 (732)
Q Consensus 180 ~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~Sp--Dg~~l 257 (732)
...++|+|||+.|+....+ ..|.+|++.++... ++.....+...+..++|++ +|++|
T Consensus 16 V~~v~~s~~g~~lasgs~D-------------------~~v~lwd~~~~~~~--~~~~l~gH~~~V~~v~~~~~~~~~~l 74 (316)
T 3bg1_A 16 IHDAQMDYYGTRLATCSSD-------------------RSVKIFDVRNGGQI--LIADLRGHEGPVWQVAWAHPMYGNIL 74 (316)
T ss_dssp EEEEEECGGGCEEEEEETT-------------------TEEEEEEEETTEEE--EEEEEECCSSCEEEEEECCGGGSSCE
T ss_pred EEEeeEcCCCCEEEEEeCC-------------------CeEEEEEecCCCcE--EEEEEcCCCccEEEEEeCCCCCCCEE
Confidence 4789999999998876543 36888887654221 2222222334567889986 48887
Q ss_pred EEEEecCCcceEEEEEEeCCCCCCCcccccccCCCCCcEEeeeccc-ceEEEEEec--CCeEEEEeCCCCCCceEEEEeC
Q 004766 258 VMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFD-AQYEVIAND--DTVFTFLTNKDAPKYKIIRVDL 334 (732)
Q Consensus 258 ~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~s~d--g~~l~~~s~~~~~~~~l~~~d~ 334 (732)
+..+.++ .+.++|+.++.. .....+..... .....|+|+ |..|+. ... ...|..+|+
T Consensus 75 ~s~s~D~-----~v~iWd~~~~~~-----------~~~~~~~~h~~~V~~v~~~p~~~g~~las-gs~---D~~i~lwd~ 134 (316)
T 3bg1_A 75 ASCSYDR-----KVIIWREENGTW-----------EKSHEHAGHDSSVNSVCWAPHDYGLILAC-GSS---DGAISLLTY 134 (316)
T ss_dssp EEEETTS-----CEEEECCSSSCC-----------CEEEEECCCSSCCCEEEECCTTTCSCEEE-ECS---SSCEEEEEE
T ss_pred EEEECCC-----EEEEEECCCCcc-----------eEEEEccCCCCceEEEEECCCCCCcEEEE-EcC---CCCEEEEec
Confidence 7655433 377788876320 11112211111 112358887 444443 332 234666676
Q ss_pred CCCCCceEec-cCCCCCceeEEEEecC-----------------CEEEEEEecCCeeEEEEEeCCCCc---eeeeccccc
Q 004766 335 KEPNDWFEVI-PEAERDVLESATAVNL-----------------NQMIVSYLSDVKYVLQIRDLKNGS---LLHQLPIEI 393 (732)
Q Consensus 335 ~~~~~~~~l~-~~~~~~~l~~~~~~~~-----------------~~l~~~~~~~g~~~l~~~d~~~g~---~~~~l~~~~ 393 (732)
.++..+.... .......+..+.++++ ..++++...++ .|++||+.++. ....+..+.
T Consensus 135 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~--~v~lWd~~~~~~~~~~~~l~~h~ 212 (316)
T 3bg1_A 135 TGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDN--LIKLWKEEEDGQWKEEQKLEAHS 212 (316)
T ss_dssp CSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTS--BCCEEEECTTSCEEEEECCBCCS
T ss_pred CCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCC--eEEEEEeCCCCccceeeecccCC
Confidence 6543222111 1111234555666653 24566666664 57778876442 223444445
Q ss_pred ceeeEeecccCC---cEEEEEEecCCCCceEEEEECCC
Q 004766 394 GSVNAISARRED---SVVFISFTSFLIPGIVYQCNLKT 428 (732)
Q Consensus 394 g~v~~~~~s~d~---~~l~~~~ss~~~p~~~y~~d~~~ 428 (732)
..|..+.++|++ ..++++.+.. ..+..+++.+
T Consensus 213 ~~V~~v~~sp~~~~~~~~las~s~D---~~v~iw~~~~ 247 (316)
T 3bg1_A 213 DWVRDVAWAPSIGLPTSTIASCSQD---GRVFIWTCDD 247 (316)
T ss_dssp SCEEEEECCCCSSCSCCEEEEEETT---CEEEEEECSS
T ss_pred CceEEEEecCCCCCCCceEEEEcCC---CeEEEEEccC
Confidence 668888888876 2344444432 4678888765
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.83 E-value=0.024 Score=58.67 Aligned_cols=206 Identities=8% Similarity=-0.045 Sum_probs=125.0
Q ss_pred EEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecccccc-eeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcc
Q 004766 134 LIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSW-FKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTET 212 (732)
Q Consensus 134 ~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~~~-~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~ 212 (732)
..++.|+|.+++|.++ +..+ ..|+.++++++........+ ....+++..+.+..||++-.
T Consensus 75 ~~~l~~d~~~~~ly~~-D~~~---~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~--------------- 135 (349)
T 3v64_C 75 AIALDFHHRRELVFWS-DVTL---DRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDS--------------- 135 (349)
T ss_dssp EEEEEEETTTTEEEEE-ETTT---TEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEET---------------
T ss_pred eEEEEEeccccEEEEE-eccC---CceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcC---------------
Confidence 4578899988877665 4333 27899999877532211111 12367888888888888732
Q ss_pred cCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCC
Q 004766 213 DSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGL 292 (732)
Q Consensus 213 ~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~ 292 (732)
....|++.++.+.. ...+.... .....+++++|++.+|++..... ...|+.+++++..
T Consensus 136 ---~~~~I~~~~~dG~~--~~~l~~~~--l~~P~~iavdp~~g~ly~td~~~---~~~I~r~~~dG~~------------ 193 (349)
T 3v64_C 136 ---GTSRIEVANLDGAH--RKVLLWQS--LEKPRAIALHPMEGTIYWTDWGN---TPRIEASSMDGSG------------ 193 (349)
T ss_dssp ---TTTEEEEEETTSCS--CEEEECTT--CSCEEEEEEETTTTEEEEEECSS---SCEEEEEETTSCS------------
T ss_pred ---CCCeEEEEcCCCCc--eEEEEeCC--CCCcceEEEecCcCeEEEeccCC---CCEEEEEeCCCCC------------
Confidence 23468888886543 22333221 12235789999999988775432 2679999987632
Q ss_pred CCcEEeee-ccc-ceEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecCCEEEEEEecC
Q 004766 293 LPFVKLID-GFD-AQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSD 370 (732)
Q Consensus 293 ~~~~~l~~-~~~-~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~~l~~~~~~~ 370 (732)
.+.+.. +.. ..-..+++++++||+.-. ...+|.++++++.. .+.++... .....++.++. +.+|++...+
T Consensus 194 --~~~~~~~~~~~PnGla~d~~~~~lY~aD~---~~~~I~~~~~dG~~-~~~~~~~~-~~~P~giav~~-~~ly~td~~~ 265 (349)
T 3v64_C 194 --RRIIADTHLFWPNGLTIDYAGRRMYWVDA---KHHVIERANLDGSH-RKAVISQG-LPHPFAITVFE-DSLYWTDWHT 265 (349)
T ss_dssp --CEESCCSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCS-CEEEECSS-CSSEEEEEEET-TEEEEEETTT
T ss_pred --cEEEEECCCCCcceEEEeCCCCEEEEEEC---CCCEEEEEeCCCCc-eEEEEeCC-CCCceEEEEEC-CEEEEecCCC
Confidence 122221 111 111247888888887533 24589999988754 34454433 23345677755 7888876544
Q ss_pred CeeEEEEEeCCCCceeeecc
Q 004766 371 VKYVLQIRDLKNGSLLHQLP 390 (732)
Q Consensus 371 g~~~l~~~d~~~g~~~~~l~ 390 (732)
.+|.+++..+|+..+.|.
T Consensus 266 --~~V~~~~~~~G~~~~~i~ 283 (349)
T 3v64_C 266 --KSINSANKFTGKNQEIIR 283 (349)
T ss_dssp --TEEEEEETTTCCSCEEEE
T ss_pred --CeEEEEEccCCCccEEec
Confidence 578888865676544443
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=97.83 E-value=0.004 Score=63.52 Aligned_cols=153 Identities=14% Similarity=0.126 Sum_probs=81.6
Q ss_pred EeEEec---CCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCCCCcEEeeeccc--ceE--EEEEecCCeEEEE
Q 004766 247 SGHVTE---DGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFD--AQY--EVIANDDTVFTFL 319 (732)
Q Consensus 247 ~~~~Sp---Dg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~--~~~s~dg~~l~~~ 319 (732)
.++||| ||..|+-.+.+ ..|.++|+++++ ....+..+.. ... ..|+|||..++..
T Consensus 183 ~l~fs~~~g~~~~LaSgS~D-----~TIkIWDl~TGk-------------~l~tL~g~~~~v~~v~~vafSpdG~~lvs~ 244 (356)
T 2w18_A 183 ILTFAEVQGMQEALLGTTIM-----NNIVIWNLKTGQ-------------LLKKMHIDDSYQASVCHKAYSEMGLLFIVL 244 (356)
T ss_dssp EEEEEEEETSTTEEEEEETT-----SEEEEEETTTCC-------------EEEEEECCC---CCCEEEEEEETTEEEEEE
T ss_pred eEEeeccCCCCceEEEecCC-----CcEEEEECCCCc-------------EEEEEcCCCcceeeeEEEEECCCCCEEEEe
Confidence 345555 45555443322 348888998753 1333332111 111 2489998877654
Q ss_pred eCC--------CCCCceEEEEeCCCCCCceEec---cCCCCCceeEEEEecCCEEEEEEecCCeeEEEEEeCCCCceeee
Q 004766 320 TNK--------DAPKYKIIRVDLKEPNDWFEVI---PEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQ 388 (732)
Q Consensus 320 s~~--------~~~~~~l~~~d~~~~~~~~~l~---~~~~~~~l~~~~~~~~~~l~~~~~~~g~~~l~~~d~~~g~~~~~ 388 (732)
+.. +.....+..+|+.++.....+. +......+-..... +.++++...|+ .|++||+.+|+.+..
T Consensus 245 s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~Dg--TIkIWDl~tGk~l~t 320 (356)
T 2w18_A 245 SHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSG--TIAIWDLLLGQCTAL 320 (356)
T ss_dssp C------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTS--CEEEEETTTCSEEEE
T ss_pred ccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC--CCEEEEEcCCC--cEEEEECCCCcEEEE
Confidence 431 2335567778887775322221 22211112122222 34666776674 799999999988777
Q ss_pred cccccc-eeeEeecccCCcEEEEEEecCCCCceEEEEE
Q 004766 389 LPIEIG-SVNAISARREDSVVFISFTSFLIPGIVYQCN 425 (732)
Q Consensus 389 l~~~~g-~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d 425 (732)
+..+.. .+..+.++|||+.|+ +.+. -.+++.||
T Consensus 321 L~gH~~~vvs~vafSPDG~~La-SGS~---D~TIklWd 354 (356)
T 2w18_A 321 LPPVSDQHWSFVKWSGTDSHLL-AGQK---DGNIFVYH 354 (356)
T ss_dssp ECCC--CCCCEEEECSSSSEEE-EECT---TSCEEEEE
T ss_pred ecCCCCCeEEEEEECCCCCEEE-EEEC---CCcEEEec
Confidence 764433 344578899998654 3332 24566655
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=97.81 E-value=0.02 Score=58.38 Aligned_cols=221 Identities=11% Similarity=0.019 Sum_probs=124.9
Q ss_pred EEEEEECCCCceecccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCCcccEEEEEECCCCC--CCCeEEE
Q 004766 159 TIKLMRIEDQIVEADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQ--SEDILCW 236 (732)
Q Consensus 159 ~i~v~dl~~g~~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~--~~~~~v~ 236 (732)
.|+.+|+++++............+++|.++++.||++-. ...+|++.++.+.. .....+.
T Consensus 11 ~I~~i~~~~~~~~~~~~~~~~p~g~~~d~~~~~ly~~D~------------------~~~~I~~~~~~g~~~~~~~~~~~ 72 (316)
T 1ijq_A 11 EVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDL------------------SQRMICSTQLDRAHGVSSYDTVI 72 (316)
T ss_dssp SEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEET------------------TTTEEEEEEC--------CEEEE
T ss_pred eEEEEECCCcceEehhcCCCceEEEEEEeCCCEEEEEEC------------------CCCcEEEEECCCCCCCcccEEEE
Confidence 588999988764322111112468999998888988742 23578888886510 1122333
Q ss_pred ecC-CCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCCCCcEEeee-cccc-eEEEEEecC
Q 004766 237 KDP-EHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLID-GFDA-QYEVIANDD 313 (732)
Q Consensus 237 ~~~-~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~-~~~~~s~dg 313 (732)
... ..+ .++++++.++.|++.... ...|.++++++.. .+.+.. .... .-..+.|.+
T Consensus 73 ~~~~~~p---~glavd~~~~~ly~~d~~----~~~I~~~~~~g~~--------------~~~~~~~~~~~P~~iavdp~~ 131 (316)
T 1ijq_A 73 SRDIQAP---DGLAVDWIHSNIYWTDSV----LGTVSVADTKGVK--------------RKTLFRENGSKPRAIVVDPVH 131 (316)
T ss_dssp CSSCSCC---CEEEEETTTTEEEEEETT----TTEEEEEETTSSS--------------EEEEEECTTCCEEEEEEETTT
T ss_pred eCCCCCc---CEEEEeecCCeEEEEECC----CCEEEEEeCCCCc--------------eEEEEECCCCCcceEEeCCCC
Confidence 221 112 367888888887765432 3568888887631 223332 1111 112467777
Q ss_pred CeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEec-CCEEEEEEecCCeeEEEEEeCCCCceeeecc-c
Q 004766 314 TVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVN-LNQMIVSYLSDVKYVLQIRDLKNGSLLHQLP-I 391 (732)
Q Consensus 314 ~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~-~~~l~~~~~~~g~~~l~~~d~~~g~~~~~l~-~ 391 (732)
+.||+.. .+ ...+|+++++++.. .+.++... -..-.++.+.+ ++.||+..... .+|++++++ |...+.+. .
T Consensus 132 g~ly~~d-~~-~~~~I~~~~~dG~~-~~~~~~~~-~~~P~gla~d~~~~~lY~~D~~~--~~I~~~d~d-g~~~~~~~~~ 204 (316)
T 1ijq_A 132 GFMYWTD-WG-TPAKIKKGGLNGVD-IYSLVTEN-IQWPNGITLDLLSGRLYWVDSKL--HSISSIDVN-GGNRKTILED 204 (316)
T ss_dssp TEEEEEE-CS-SSCEEEEEETTSCC-EEEEECSS-CSCEEEEEEETTTTEEEEEETTT--TEEEEEETT-SCSCEEEEEC
T ss_pred CEEEEEc-cC-CCCeEEEEcCCCCC-eEEEEECC-CCCceEEEEeccCCEEEEEECCC--CeEEEEecC-CCceEEEeec
Confidence 7887653 32 23689999987654 34444332 24456788885 47788776544 589999997 54433332 1
Q ss_pred c--cceeeEeecccCCcEEEEEEecCCCCceEEEEECCCCC
Q 004766 392 E--IGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 430 (732)
Q Consensus 392 ~--~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~~ 430 (732)
+ .....+++. +++.++++- ..-.++++++..+++
T Consensus 205 ~~~~~~P~giav--~~~~ly~~d---~~~~~V~~~~~~~g~ 240 (316)
T 1ijq_A 205 EKRLAHPFSLAV--FEDKVFWTD---IINEAIFSANRLTGS 240 (316)
T ss_dssp TTTTSSEEEEEE--ETTEEEEEE---TTTTEEEEEETTTCC
T ss_pred CCccCCcEEEEE--ECCEEEEEE---CCCCeEEEEeCCCCc
Confidence 1 122234444 345566543 234678888876664
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=97.80 E-value=0.021 Score=60.43 Aligned_cols=223 Identities=10% Similarity=-0.002 Sum_probs=126.2
Q ss_pred EEEEEEECCCCceecccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCCcccEEEEEECCCCC--CCCeEE
Q 004766 158 ATIKLMRIEDQIVEADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQ--SEDILC 235 (732)
Q Consensus 158 ~~i~v~dl~~g~~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~--~~~~~v 235 (732)
..|+.+|++++.............+++|.+.+..||++-. ...+|+++++.+.. .....+
T Consensus 92 ~~I~~i~l~~~~~~~~~~~~~~~~~l~~d~~~~~lywsD~------------------~~~~I~~~~~~g~~~~~~~~~~ 153 (400)
T 3p5b_L 92 HEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDL------------------SQRMICSTQLDRAHGVSSYDTV 153 (400)
T ss_dssp TEEEEECTTSCSCEEEECSCSCEEEEEEETTTTEEEEEET------------------TTTEEEEEEC------CCCEEE
T ss_pred ceeEEEccCCcceeEeccccCcceEEeeeeccCceEEEec------------------CCCeEEEEEcccCCCCCcceEE
Confidence 3789999987753321111112478999998888988732 23468888876422 122334
Q ss_pred EecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCCCCcEEeee-cccce-EEEEEecC
Q 004766 236 WKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLID-GFDAQ-YEVIANDD 313 (732)
Q Consensus 236 ~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~-~~~~s~dg 313 (732)
.... .....++++.+.++.|++.... ...|.++++++.. .+.+.. ..... -..+.|.+
T Consensus 154 ~~~~--~~~p~glavD~~~~~lY~~d~~----~~~I~~~~~~g~~--------------~~~l~~~~~~~P~~iavdp~~ 213 (400)
T 3p5b_L 154 ISRD--IQAPDGLAVDWIHSNIYWTDSV----LGTVSVADTKGVK--------------RKTLFRENGSKPRAIVVDPVH 213 (400)
T ss_dssp ECSS--CSCEEEEEEETTTTEEEEEETT----TTEEEEECTTTCS--------------EEEEEECSSCCEEEEEEETTT
T ss_pred EeCC--CCCcccEEEEecCCceEEEECC----CCeEEEEeCCCCc--------------eEEEEeCCCCCcceEEEeccc
Confidence 3321 1233578888878888766432 3468888887632 223332 22211 12467777
Q ss_pred CeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEec-CCEEEEEEecCCeeEEEEEeCCCCceeeecccc
Q 004766 314 TVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVN-LNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIE 392 (732)
Q Consensus 314 ~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~-~~~l~~~~~~~g~~~l~~~d~~~g~~~~~l~~~ 392 (732)
+.||+. +.+ ...+|+++++++.. .+.++... -..-.++.+.. ++.||++.... ..|++++++ |...+.+...
T Consensus 214 g~ly~t-d~~-~~~~I~~~~~dG~~-~~~~~~~~-l~~P~glavd~~~~~lY~aD~~~--~~I~~~d~d-G~~~~~~~~~ 286 (400)
T 3p5b_L 214 GFMYWT-DWG-TPAKIKKGGLNGVD-IYSLVTEN-IQWPNGITLDLLSGRLYWVDSKL--HSISSIDVN-GGNRKTILED 286 (400)
T ss_dssp TEEEEE-ECS-SSCCEEEEETTSCS-CEEEECSS-CSCEEEEEEETTTTEEEEEETTT--TEEEEEETT-SCCCEEEEEC
T ss_pred CeEEEE-eCC-CCCEEEEEeCCCCc-cEEEEECC-CCceEEEEEEeCCCEEEEEECCC--CEEEEEeCC-CCccEEEEeC
Confidence 777764 332 23579999998765 34554432 24456788884 47788875543 689999997 5443333211
Q ss_pred ---cceeeEeecccCCcEEEEEEecCCCCceEEEEECCCCC
Q 004766 393 ---IGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 430 (732)
Q Consensus 393 ---~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~~ 430 (732)
.....+++. +++.++++- ..-.+|+++|..+|+
T Consensus 287 ~~~l~~P~gl~v--~~~~lywtd---~~~~~V~~~~~~~G~ 322 (400)
T 3p5b_L 287 EKRLAHPFSLAV--FEDKVFWTD---IINEAIFSANRLTGS 322 (400)
T ss_dssp SSTTSSEEEEEE--ETTEEEEEE---SSSCSEEEEESSSCC
T ss_pred CCCCCCCEEEEE--eCCEEEEec---CCCCeEEEEEcCCCC
Confidence 112223333 445565543 223567788866664
|
| >2dsn_A Thermostable lipase; T1 lipase, hydrolase; 1.50A {Geobacillus zalihae} PDB: 3umj_A 2z5g_A 1ji3_A 3auk_A 2w22_A* 1ku0_A | Back alignment and structure |
|---|
Probab=97.77 E-value=0.00011 Score=76.82 Aligned_cols=88 Identities=9% Similarity=0.044 Sum_probs=53.2
Q ss_pred CccEEEEEcCCCCccCC-----CCcCh---hHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCccHHHHHHHHHHH
Q 004766 480 SHPCLLYGYGGFNISVT-----PSFSV---SRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEY 551 (732)
Q Consensus 480 ~~P~vv~~hG~~~~~~~-----~~~~~---~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~ 551 (732)
+.|.||++||..+.... ..|.. .+...|.++||.|+++|+||.|.. +..+ .++...++.
T Consensus 5 ~~~pVVLvHG~~g~~~~~~~~~~yW~~~~~~la~~L~~~G~~Via~Dl~g~G~s---~~~a----------~~l~~~i~~ 71 (387)
T 2dsn_A 5 NDAPIVLLHGFTGWGREEMFGFKYWGGVRGDIEQWLNDNGYRTYTLAVGPLSSN---WDRA----------CEAYAQLVG 71 (387)
T ss_dssp CCCCEEEECCSSCCCTTSGGGCCTTTTTTCCHHHHHHHTTCCEEEECCCSSBCH---HHHH----------HHHHHHHHC
T ss_pred CCCcEEEECCCCCCCcccccccchhhhhhHHHHHHHHHCCCEEEEecCCCCCCc---cccH----------HHHHHHHHh
Confidence 44568999998775422 22332 233566668999999999996542 1110 122221210
Q ss_pred --------HHHc-----------C----CCCCCcEEEEecChhHHHHHHHHh
Q 004766 552 --------LISA-----------G----YTQSRKLCIEGGSNGGLLVGACIN 580 (732)
Q Consensus 552 --------l~~~-----------~----~~d~~~i~i~G~S~GG~l~~~~~~ 580 (732)
+.+. . ....+++.++||||||+++..++.
T Consensus 72 ~~vDy~~~~a~~~~~~~~~~~l~~ll~~~~~~~kv~LVGHSmGG~va~~~a~ 123 (387)
T 2dsn_A 72 GTVDYGAAHAAKHGHARFGRTYPGLLPELKRGGRIHIIAHSQGGQTARMLVS 123 (387)
T ss_dssp EEEECCHHHHHHHTSCSEEEEECCSCGGGGTTCCEEEEEETTHHHHHHHHHH
T ss_pred hhhhhhhhhhhhccchhhhhhHHHHHHHhcCCCceEEEEECHHHHHHHHHHH
Confidence 1100 0 123478999999999999998886
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=97.77 E-value=0.029 Score=55.94 Aligned_cols=232 Identities=11% Similarity=0.040 Sum_probs=128.1
Q ss_pred EEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecccc--cceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCc
Q 004766 134 LIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADAL--SWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTE 211 (732)
Q Consensus 134 ~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~--~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~ 211 (732)
+.++.++|||+.. ++ +..+ ..|+++|.. ++...... ......++++++||+ |+++..
T Consensus 17 ~~~i~~d~~g~l~-v~-~~~~---~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~-------------- 75 (299)
T 2z2n_A 17 PYGITVSDKGKVW-IT-QHKA---NMISCINLD-GKITEYPLPTPDAKVMCLTISSDGE-VWFTEN-------------- 75 (299)
T ss_dssp EEEEEECTTSCEE-EE-ETTT---TEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSC-EEEEET--------------
T ss_pred ccceEECCCCCEE-EE-ecCC---CcEEEEcCC-CCeEEecCCcccCceeeEEECCCCC-EEEeCC--------------
Confidence 5678899999843 33 3222 268889988 65332111 112346788989886 555532
Q ss_pred ccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCC
Q 004766 212 TDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDG 291 (732)
Q Consensus 212 ~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 291 (732)
....|++++.. +. ...+..+........+.+++||+.. +... . ...|++++..+ .
T Consensus 76 ----~~~~i~~~~~~-g~---~~~~~~~~~~~~~~~i~~~~~g~l~-v~~~-~---~~~i~~~d~~g-~----------- 130 (299)
T 2z2n_A 76 ----AANKIGRITKK-GI---IKEYTLPNPDSAPYGITEGPNGDIW-FTEM-N---GNRIGRITDDG-K----------- 130 (299)
T ss_dssp ----TTTEEEEECTT-SC---EEEEECSSTTCCEEEEEECTTSCEE-EEET-T---TTEEEEECTTC-C-----------
T ss_pred ----CCCeEEEECCC-Cc---EEEEeCCCcCCCceeeEECCCCCEE-EEec-C---CceEEEECCCC-C-----------
Confidence 12357777754 11 2223322122345678889998643 3322 1 24588888732 2
Q ss_pred CCCcEEeee--ccc-ceEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecCCEEEEEEe
Q 004766 292 LLPFVKLID--GFD-AQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYL 368 (732)
Q Consensus 292 ~~~~~~l~~--~~~-~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~~l~~~~~ 368 (732)
...... ... .....++++| .+|+.... ...|+++|. ++. ...+..........++.+.+++.+++...
T Consensus 131 ---~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~---~~~i~~~~~-~g~-~~~~~~~~~~~~~~~i~~~~~g~l~v~~~ 201 (299)
T 2z2n_A 131 ---IREYELPNKGSYPSFITLGSDN-ALWFTENQ---NNAIGRITE-SGD-ITEFKIPTPASGPVGITKGNDDALWFVEI 201 (299)
T ss_dssp ---EEEEECSSTTCCEEEEEECTTS-CEEEEETT---TTEEEEECT-TCC-EEEEECSSTTCCEEEEEECTTSSEEEEET
T ss_pred ---EEEecCCCCCCCCceEEEcCCC-CEEEEeCC---CCEEEEEcC-CCc-EEEeeCCCCCCcceeEEECCCCCEEEEcc
Confidence 111111 111 1112356666 56665432 347999998 554 33331122124456777776667777654
Q ss_pred cCCeeEEEEEeCCCCceeeecccc--cceeeEeecccCCcEEEEEEecCCCCceEEEEECCCC
Q 004766 369 SDVKYVLQIRDLKNGSLLHQLPIE--IGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTE 429 (732)
Q Consensus 369 ~~g~~~l~~~d~~~g~~~~~l~~~--~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~ 429 (732)
.. ..|++++. +|+. ..+..+ ...+..+..++++. ++++.. ....++++|+ ++
T Consensus 202 ~~--~~i~~~~~-~g~~-~~~~~~~~~~~~~~i~~~~~g~-l~v~~~---~~~~i~~~d~-~g 255 (299)
T 2z2n_A 202 IG--NKIGRITT-SGEI-TEFKIPTPNARPHAITAGAGID-LWFTEW---GANKIGRLTS-NN 255 (299)
T ss_dssp TT--TEEEEECT-TCCE-EEEECSSTTCCEEEEEECSTTC-EEEEET---TTTEEEEEET-TT
T ss_pred CC--ceEEEECC-CCcE-EEEECCCCCCCceeEEECCCCC-EEEecc---CCceEEEECC-CC
Confidence 43 47899998 5765 344333 34456677777876 665532 2467999998 44
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=97.76 E-value=0.0027 Score=69.29 Aligned_cols=247 Identities=11% Similarity=0.041 Sum_probs=127.2
Q ss_pred EEECC-----CCcEEEEEEeccCCceEEEEEEECCCCceecc-ccc-ceeeeeEEE-E-eCCcEEEEEEecCC---CCCC
Q 004766 137 VSVSE-----DAKYLAYALSYSGSDWATIKLMRIEDQIVEAD-ALS-WFKFSSIAW-T-HDSKGFFYSRYPAP---KEGK 204 (732)
Q Consensus 137 ~~~SP-----DG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~-~~~-~~~~~~~~W-s-pDg~~l~y~~~~~~---~~~~ 204 (732)
+..|. ||++|.. .+..+ ..|.++|+++.+.... .+. +....++++ + ||++++|....... ....
T Consensus 90 ~~~s~t~g~~DG~~lfV-nd~~~---~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~ 165 (595)
T 1fwx_A 90 VHMSFTEGKYDGRFLFM-NDKAN---TRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGT 165 (595)
T ss_dssp EEEEEETTEEEEEEEEE-EETTT---TEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSS
T ss_pred cccCCCCCCcCCCEEEE-EcCCC---CEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCc
Confidence 66676 9987754 44333 3799999999884431 122 122467777 5 99999977653210 0001
Q ss_pred CCCCCCcccCCcccEEEEEECCCCCCCCeEEEecC--CCCeeEEEeEEecCCcEEEEEEecCCc----------ceE---
Q 004766 205 DMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDP--EHPKYIFSGHVTEDGQYLVMCIEENCD----------PVN--- 269 (732)
Q Consensus 205 ~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~--~~~~~~~~~~~SpDg~~l~~~~~~~~~----------~~~--- 269 (732)
.+. ....+...+-..+..+.+ .+++.. .++ ..++.||||++++.++..... ...
T Consensus 166 ~l~----~~~~~~~~vtvID~~t~~----v~~qI~Vgg~p---d~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~ 234 (595)
T 1fwx_A 166 NME----DVANYVNVFTAVDADKWE----VAWQVLVSGNL---DNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIV 234 (595)
T ss_dssp STT----CGGGEEEEEEEEETTTTE----EEEEEEESSCC---CCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEE
T ss_pred ccc----cccccCceEEEEECCCCe----EEEEEEeCCCc---cceEECCCCCEEEEEecCcccCcchhhccccccceEE
Confidence 110 112334457777776543 233211 122 256789999999887744310 011
Q ss_pred --------------------EEEEEeCCCCCCCcccccccCCCCC-cEEeeecccceEEEEEecCCeEEEEeCCCCCCce
Q 004766 270 --------------------KVYYCDLSALPEGLEGFKKRDGLLP-FVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYK 328 (732)
Q Consensus 270 --------------------~l~~~d~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~ 328 (732)
.+-++|.++.+ ... ...+..+....-..++|||+++|+ ++... .+
T Consensus 235 V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~-----------~~~~~~~Ipvg~~PhGv~~sPDGk~v~V-~~~~s--~~ 300 (595)
T 1fwx_A 235 VFNIAEIEKAIAAGDYQELNGVKVVDGRKEA-----------SSLFTRYIPIANNPHGCNMAPDKKHLCV-AGKLS--PT 300 (595)
T ss_dssp EEEHHHHHHHHHHTCSEEETTEEEEECSGGG-----------CCSSEEEEEEESSCCCEEECTTSSEEEE-ECTTS--SB
T ss_pred EeeccceeEeccCCCeeEECcEEEEeCcccC-----------CceeEEEEecCCCceEEEEcCCCCEEEE-eCCCC--Ce
Confidence 24445544310 011 112222222222358999988775 55443 46
Q ss_pred EEEEeCCCCCC---------ceEeccCCCCCceeEEEEecCCEEEEEEecCCeeEEEEEeCCC----------Cceeeec
Q 004766 329 IIRVDLKEPND---------WFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKN----------GSLLHQL 389 (732)
Q Consensus 329 l~~~d~~~~~~---------~~~l~~~~~~~~l~~~~~~~~~~l~~~~~~~g~~~l~~~d~~~----------g~~~~~l 389 (732)
+..+|+++... -..+..-..+.--..+.+++++.+|++..-+ ++|.+|++++ .+.+.++
T Consensus 301 VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~aF~~dG~aY~t~~ld--sqV~kwdi~~a~~~~~g~~~~~vi~ki 378 (595)
T 1fwx_A 301 VTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRGNAYTSLFLD--SQVVKWNIEDAIRAYAGEKVDPIKDKL 378 (595)
T ss_dssp EEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEEECTTSEEEEEETTT--TEEEEEEHHHHHHHHHTCSCCCEEEEE
T ss_pred EEEEECcccccccccccCcccceEEEcCCCCCcceEEECCCCeEEEEEecC--CcEEEEEhhHhhhhhcccccceeEEEe
Confidence 77888764310 0011111111223456777767666665555 6788899875 2333445
Q ss_pred ccc--ccee---eEeecccCCcEEEEEEecC
Q 004766 390 PIE--IGSV---NAISARREDSVVFISFTSF 415 (732)
Q Consensus 390 ~~~--~g~v---~~~~~s~d~~~l~~~~ss~ 415 (732)
... .|.. .+.+.++||+.|+ +.+.+
T Consensus 379 dV~yqpGh~~~~~g~t~~~DGk~l~-~~Nk~ 408 (595)
T 1fwx_A 379 DVHYQPGHLKTVMGETLDATNDWLV-CLSKF 408 (595)
T ss_dssp ECSSCEEEEEETTTTSTTCCSSEEE-EEESC
T ss_pred ecccccccceeccceEeCCCCCEEE-EcCCC
Confidence 443 2322 1235688998765 34433
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=97.75 E-value=0.0032 Score=63.95 Aligned_cols=193 Identities=11% Similarity=0.114 Sum_probs=109.9
Q ss_pred eeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEE
Q 004766 181 SSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMC 260 (732)
Q Consensus 181 ~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~ 260 (732)
.+++|+|||+.|+++.. ....|++++.. +. ..++..+. ....++.+++||+.++ .
T Consensus 48 egp~~~~~g~~l~~~d~------------------~~~~i~~~~~~-g~---~~~~~~~~--~~~~gl~~d~dG~l~v-~ 102 (305)
T 3dr2_A 48 EGPAWWEAQRTLVWSDL------------------VGRRVLGWRED-GT---VDVLLDAT--AFTNGNAVDAQQRLVH-C 102 (305)
T ss_dssp EEEEEEGGGTEEEEEET------------------TTTEEEEEETT-SC---EEEEEESC--SCEEEEEECTTSCEEE-E
T ss_pred cCCeEeCCCCEEEEEEC------------------CCCEEEEEeCC-CC---EEEEeCCC--CccceeeECCCCCEEE-E
Confidence 57999999999988742 23468888873 32 23333332 2456889999999543 3
Q ss_pred EecCCcceEEEEEEeCCCCCCCcccccccCCCCCcEEeeeccc------ceEEEEEecCCeEEEEe-----CC-------
Q 004766 261 IEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFD------AQYEVIANDDTVFTFLT-----NK------- 322 (732)
Q Consensus 261 ~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~------~~~~~~s~dg~~l~~~s-----~~------- 322 (732)
. .. ...|++++.++ . ...+..... ..-..++++|+ +||.- ..
T Consensus 103 ~-~~---~~~v~~~~~~g-~--------------~~~~~~~~~~~~~~~~~~i~~d~dG~-l~~td~~~g~~~~~~~~~~ 162 (305)
T 3dr2_A 103 E-HG---RRAITRSDADG-Q--------------AHLLVGRYAGKRLNSPNDLIVARDGA-IWFTDPPFGLRKPSQGCPA 162 (305)
T ss_dssp E-TT---TTEEEEECTTS-C--------------EEEEECEETTEECSCCCCEEECTTSC-EEEECCSGGGSCGGGSCCC
T ss_pred E-CC---CCEEEEECCCC-C--------------EEEEEeccCCCccCCCCCEEECCCCC-EEEeCcCCCcccccccccc
Confidence 2 11 24588888753 2 222222111 01124778775 66531 10
Q ss_pred --CCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecCC-EEEEEEecC---CeeEEEEEeCCCCcee--eec-cccc
Q 004766 323 --DAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLN-QMIVSYLSD---VKYVLQIRDLKNGSLL--HQL-PIEI 393 (732)
Q Consensus 323 --~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~-~l~~~~~~~---g~~~l~~~d~~~g~~~--~~l-~~~~ 393 (732)
......|+++|.++++ ++.+. . .....++.+++++ .||+..... +...|++++++.+... +.+ ..+.
T Consensus 163 ~~~~~~~~v~~~d~~~g~-~~~~~-~--~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~ 238 (305)
T 3dr2_A 163 DPELAHHSVYRLPPDGSP-LQRMA-D--LDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPD 238 (305)
T ss_dssp CCSSSCEEEEEECSSSCC-CEEEE-E--ESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSS
T ss_pred ccccCCCeEEEEcCCCCc-EEEEe-c--CCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCC
Confidence 0124679999987766 45444 2 2345678888765 466665432 1257999998644310 111 1123
Q ss_pred ceeeEeecccCCcEEEEEEecCCCCceEEEEECCC
Q 004766 394 GSVNAISARREDSVVFISFTSFLIPGIVYQCNLKT 428 (732)
Q Consensus 394 g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~ 428 (732)
+....+..+++|+ ++++. ...+++++...
T Consensus 239 ~~pdgi~~d~~G~-lwv~~-----~~gv~~~~~~g 267 (305)
T 3dr2_A 239 GLPDGFCVDRGGW-LWSSS-----GTGVCVFDSDG 267 (305)
T ss_dssp SCCCSEEECTTSC-EEECC-----SSEEEEECTTS
T ss_pred CCCCeEEECCCCC-EEEec-----CCcEEEECCCC
Confidence 3444566778887 66543 34699999853
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=97.68 E-value=0.0076 Score=64.05 Aligned_cols=194 Identities=9% Similarity=0.013 Sum_probs=106.7
Q ss_pred EEECCCCcEEEEEEeccCCceEEEEEEECCCCceeccc----c-cceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCc
Q 004766 137 VSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADA----L-SWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTE 211 (732)
Q Consensus 137 ~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~----~-~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~ 211 (732)
+.|+|+|++|..+ +..+.. .|++++..++...... . ......+++++|++..||++ .
T Consensus 176 ia~~~~g~~l~~~-d~~~~~--~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~-d-------------- 237 (409)
T 3hrp_A 176 PAVTKDKQRVYSI-GWEGTH--TVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFV-D-------------- 237 (409)
T ss_dssp CEECTTSSEEEEE-BSSTTC--EEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEE-C--------------
T ss_pred eeEecCCCcEEEE-ecCCCc--eEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEE-E--------------
Confidence 7899999976555 443332 7899998876532111 1 11123678999966677774 1
Q ss_pred ccCCcccEEEEEECCCCCCCCeEEEec---CCCCeeE-E-EeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccc
Q 004766 212 TDSNLYHEFYYHFLGTKQSEDILCWKD---PEHPKYI-F-SGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGF 286 (732)
Q Consensus 212 ~~~~~~~~v~~~~lgt~~~~~~~v~~~---~~~~~~~-~-~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~ 286 (732)
...+|++++..++. ..++.. ....... . .++++|++..|++.... ...|+.++.++.
T Consensus 238 ----~~~~I~~~d~~~~~---~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~----~~~I~~~~~~g~------- 299 (409)
T 3hrp_A 238 ----SNKNFGRFNVKTQE---VTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQN----LSSVYKITPDGE------- 299 (409)
T ss_dssp ----TTCEEEEEETTTCC---EEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETT----TTEEEEECTTCC-------
T ss_pred ----CCCcEEEEECCCCC---EEEEecccccCCCCCCccccEEEeCCCCEEEEEeCC----CCEEEEEecCCC-------
Confidence 12479999987653 233311 0011121 2 78999987777665422 356888887652
Q ss_pred cccCCCCCcEEeeec---------------cc-ceEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCC--
Q 004766 287 KKRDGLLPFVKLIDG---------------FD-AQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAE-- 348 (732)
Q Consensus 287 ~~~~~~~~~~~l~~~---------------~~-~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~-- 348 (732)
...+... +. ..-..++++|+ ||+. +.. .+.+|.++++.++. ...+.....
T Consensus 300 --------~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~-lyva-d~~-~~~~I~~~~~~~G~-v~~~~g~~~~~ 367 (409)
T 3hrp_A 300 --------CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGN-FYIV-DGF-KGYCLRKLDILDGY-VSTVAGQVDVA 367 (409)
T ss_dssp --------EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCC-EEEE-ETT-TTCEEEEEETTTTE-EEEEEECTTCB
T ss_pred --------EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCC-EEEE-eCC-CCCEEEEEECCCCE-EEEEeCCCCCC
Confidence 1111110 11 11124788876 6654 320 25689999976654 444443210
Q ss_pred -----------CCceeEEEEecCCEEEEEEecCCeeEEEEEeC
Q 004766 349 -----------RDVLESATAVNLNQMIVSYLSDVKYVLQIRDL 380 (732)
Q Consensus 349 -----------~~~l~~~~~~~~~~l~~~~~~~g~~~l~~~d~ 380 (732)
-....++.+.+++.||++...+ .+|+++++
T Consensus 368 g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n--~~Ir~i~~ 408 (409)
T 3hrp_A 368 SQIDGTPLEATFNYPYDICYDGEGGYWIAEAWG--KAIRKYAV 408 (409)
T ss_dssp SCCCBSTTTCCBSSEEEEEECSSSEEEEEESTT--CEEEEEEE
T ss_pred CcCCCChhceEeCCceEEEEcCCCCEEEEECCC--CeEEEEEe
Confidence 0224566666656666665444 45555543
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.67 E-value=0.0054 Score=60.01 Aligned_cols=200 Identities=16% Similarity=0.206 Sum_probs=114.5
Q ss_pred eeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEE
Q 004766 180 FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVM 259 (732)
Q Consensus 180 ~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~ 259 (732)
.++++|.||+++||.+... +.+|+..+.. +.....+.+.+. .-..++++.++|++++
T Consensus 29 lSGla~~~~~~~L~aV~d~------------------~~~I~~ld~~-g~v~~~i~l~g~---~D~EGIa~~~~g~~~v- 85 (255)
T 3qqz_A 29 ISSLTWSAQSNTLFSTINK------------------PAAIVEMTTN-GDLIRTIPLDFV---KDLETIEYIGDNQFVI- 85 (255)
T ss_dssp EEEEEEETTTTEEEEEEET------------------TEEEEEEETT-CCEEEEEECSSC---SSEEEEEECSTTEEEE-
T ss_pred cceeEEeCCCCEEEEEECC------------------CCeEEEEeCC-CCEEEEEecCCC---CChHHeEEeCCCEEEE-
Confidence 5899999999988887542 3468888876 322211111111 1235788888887543
Q ss_pred EEecCCcceEEEEEEeCCCCCCCcccccccCCCCCcEEee-------ecccceEEEEEecCCeEEEEeCCCCCCceEEEE
Q 004766 260 CIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLI-------DGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRV 332 (732)
Q Consensus 260 ~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l~-------~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~ 332 (732)
+ ..+. ..++++++..... . ....... ...+.+-..|+|++++||+...+. ...||.+
T Consensus 86 s-~E~~---~~l~~~~v~~~~~-i---------~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~--p~~i~~~ 149 (255)
T 3qqz_A 86 S-DERD---YAIYVISLTPNSE-V---------KILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKN--PIEVYKV 149 (255)
T ss_dssp E-ETTT---TEEEEEEECTTCC-E---------EEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESS--SEEEEEE
T ss_pred E-ECCC---CcEEEEEcCCCCe-e---------eeeeeeccccccccccCCcceEEEeCCCCEEEEEECcC--CceEEEE
Confidence 3 2222 4577777654211 0 0001110 011112235888888999866553 3478888
Q ss_pred e--CCCCCCceEec-----cCCCCCceeEEEEecC-CEEEEEEecCCeeEEEEEeCCCCceeeecccccc---------e
Q 004766 333 D--LKEPNDWFEVI-----PEAERDVLESATAVNL-NQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIG---------S 395 (732)
Q Consensus 333 d--~~~~~~~~~l~-----~~~~~~~l~~~~~~~~-~~l~~~~~~~g~~~l~~~d~~~g~~~~~l~~~~g---------~ 395 (732)
+ +.+.. .+.+- ....-..++++++.+. +++++.+.+. ..|..+|.+ |+.+..+.+..+ .
T Consensus 150 ~g~~~~~~-l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s--~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~q 225 (255)
T 3qqz_A 150 NGLLSSNE-LHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHES--RALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQ 225 (255)
T ss_dssp ESTTCSSC-CEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTT--TEEEEECTT-CCEEEEEECSTTGGGCSSCCCS
T ss_pred cccccCCc-eeeecchhhccccccCCceeEEEcCCCCeEEEEECCC--CeEEEEcCC-CCEEEEEEcCCccCCcccccCC
Confidence 7 12211 22220 0111234677888764 6788877655 578889986 776555555422 4
Q ss_pred eeEeecccCCcEEEEEEecCCCCceEEEEECC
Q 004766 396 VNAISARREDSVVFISFTSFLIPGIVYQCNLK 427 (732)
Q Consensus 396 v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~ 427 (732)
..+++++++|+ +|++ + .|..+|++...
T Consensus 226 pEGia~d~~G~-lyIv-s---E~n~~y~f~~~ 252 (255)
T 3qqz_A 226 AEGVAMDASGN-IYIV-S---EPNRFYRFTPQ 252 (255)
T ss_dssp EEEEEECTTCC-EEEE-E---TTTEEEEEEC-
T ss_pred CCeeEECCCCC-EEEE-c---CCceEEEEEec
Confidence 46788889886 6665 3 45689988754
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=97.67 E-value=0.0053 Score=59.87 Aligned_cols=190 Identities=8% Similarity=-0.015 Sum_probs=115.7
Q ss_pred eeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEE
Q 004766 181 SSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMC 260 (732)
Q Consensus 181 ~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~ 260 (732)
.++.++ ++.||.+.. ...+|..+++.+++....+ .. . ..| ....+++|+.|+..
T Consensus 58 qGL~~~--~~~Ly~stG------------------~~g~v~~iD~~Tgkv~~~~-l~--~-~~F--geGit~~g~~Ly~l 111 (268)
T 3nok_A 58 QGLVFH--QGHFFESTG------------------HQGTLRQLSLESAQPVWME-RL--G-NIF--AEGLASDGERLYQL 111 (268)
T ss_dssp EEEEEE--TTEEEEEET------------------TTTEEEECCSSCSSCSEEE-EC--T-TCC--EEEEEECSSCEEEE
T ss_pred ceEEEE--CCEEEEEcC------------------CCCEEEEEECCCCcEEeEE-CC--C-Ccc--eeEEEEeCCEEEEE
Confidence 467776 467777642 2224888899888765544 32 2 223 33456788888666
Q ss_pred EecCCcceEEEEEEeCCCCCCCcccccccCCCCCcEEeeecccceEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCc
Q 004766 261 IEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDW 340 (732)
Q Consensus 261 ~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~ 340 (732)
... .+.++++|.++.+ ....+.... ..+ .+++||++||+ ++ + ..+|+.+|.++.+..
T Consensus 112 tw~----~~~v~V~D~~Tl~-------------~~~ti~~~~-eGw-GLt~Dg~~L~v-Sd--G-s~~l~~iDp~T~~v~ 168 (268)
T 3nok_A 112 TWT----EGLLFTWSGMPPQ-------------RERTTRYSG-EGW-GLCYWNGKLVR-SD--G-GTMLTFHEPDGFALV 168 (268)
T ss_dssp ESS----SCEEEEEETTTTE-------------EEEEEECSS-CCC-CEEEETTEEEE-EC--S-SSEEEEECTTTCCEE
T ss_pred Ecc----CCEEEEEECCcCc-------------EEEEEeCCC-cee-EEecCCCEEEE-EC--C-CCEEEEEcCCCCeEE
Confidence 432 3679999998742 122222211 112 25678888775 44 2 457999999887632
Q ss_pred eEec-cCC--CCCceeEEEEecCCEEEEEEecCCeeEEEEEeCCCCceeeecccc-------------cceeeEeecccC
Q 004766 341 FEVI-PEA--ERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIE-------------IGSVNAISARRE 404 (732)
Q Consensus 341 ~~l~-~~~--~~~~l~~~~~~~~~~l~~~~~~~g~~~l~~~d~~~g~~~~~l~~~-------------~g~v~~~~~s~d 404 (732)
..+. ... +-..+..+.+.+ +.|++..... ..|.++|+++|+.+..|.+. .....+++.+++
T Consensus 169 ~~I~V~~~g~~v~~lNeLe~~d-G~lyanvw~s--~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~ 245 (268)
T 3nok_A 169 GAVQVKLRGQPVELINELECAN-GVIYANIWHS--SDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPG 245 (268)
T ss_dssp EEEECEETTEECCCEEEEEEET-TEEEEEETTC--SEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTT
T ss_pred EEEEeCCCCcccccccccEEeC-CEEEEEECCC--CeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCC
Confidence 2221 111 112456677776 7888766443 58999999999987777653 124467888888
Q ss_pred CcEEEEEEecCCCCceEEEEE
Q 004766 405 DSVVFISFTSFLIPGIVYQCN 425 (732)
Q Consensus 405 ~~~l~~~~ss~~~p~~~y~~d 425 (732)
+++++++---| +.+|.+.
T Consensus 246 ~~rlfVTGK~W---p~~~ev~ 263 (268)
T 3nok_A 246 SGRIFMTGKLW---PRLFEVR 263 (268)
T ss_dssp TCCEEEEETTC---SEEEEEE
T ss_pred CCEEEEeCCCC---CceEEEE
Confidence 88888765444 4566554
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=97.66 E-value=0.015 Score=59.57 Aligned_cols=186 Identities=7% Similarity=-0.050 Sum_probs=99.7
Q ss_pred EEEEeCCCCCceEEeCCCCcCCCCCEEEEeEEECCCCcEEEEEEeccC--CceEEEEEEECCCCceecccccceeeeeEE
Q 004766 107 LYVQDSLDAKAKVLLDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSG--SDWATIKLMRIEDQIVEADALSWFKFSSIA 184 (732)
Q Consensus 107 l~~r~~~~~~~~~l~D~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G--~e~~~i~v~dl~~g~~~~~~~~~~~~~~~~ 184 (732)
|++.+..++..+.+.+...- .....+..+.++|||+.+ ++..... .....|+.+| +|+............+++
T Consensus 111 l~~~d~~~g~~~~~~~~~~~--~~~~~~~~i~~d~~G~l~-v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~~~~~~i~ 185 (326)
T 2ghs_A 111 LFLRDTATGVLTLHAELESD--LPGNRSNDGRMHPSGALW-IGTMGRKAETGAGSIYHVA--KGKVTKLFADISIPNSIC 185 (326)
T ss_dssp EEEEETTTCCEEEEECSSTT--CTTEEEEEEEECTTSCEE-EEEEETTCCTTCEEEEEEE--TTEEEEEEEEESSEEEEE
T ss_pred EEEEECCCCcEEEEeeCCCC--CCCCCCCCEEECCCCCEE-EEeCCCcCCCCceEEEEEe--CCcEEEeeCCCcccCCeE
Confidence 66666544554444443210 112457789999999843 3332110 1125788888 565332111111236799
Q ss_pred EEeCCcEEEEEEecCCCCCCCCCCCCcccCCcccEEEEEECC--CC-CCCC-eEEEecCCCCeeEEEeEEecCCcEEEEE
Q 004766 185 WTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLG--TK-QSED-ILCWKDPEHPKYIFSGHVTEDGQYLVMC 260 (732)
Q Consensus 185 WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~lg--t~-~~~~-~~v~~~~~~~~~~~~~~~SpDg~~l~~~ 260 (732)
|+|||+.|+++.. ....|+++++. ++ .... ..+...........++.++++|... +.
T Consensus 186 ~s~dg~~lyv~~~------------------~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lw-va 246 (326)
T 2ghs_A 186 FSPDGTTGYFVDT------------------KVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIW-NA 246 (326)
T ss_dssp ECTTSCEEEEEET------------------TTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEE-EE
T ss_pred EcCCCCEEEEEEC------------------CCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEE-EE
Confidence 9999999988742 23478888875 43 2222 2232222222344578899999743 33
Q ss_pred EecCCcceEEEEEEeCCCCCCCcccccccCCCCCcEEeeecc-cceEEEEE-ecCCeEEEEeCCCCC----------Cce
Q 004766 261 IEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGF-DAQYEVIA-NDDTVFTFLTNKDAP----------KYK 328 (732)
Q Consensus 261 ~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~s-~dg~~l~~~s~~~~~----------~~~ 328 (732)
... ...|++++.++.. ...+.... ......|+ ++++.||+.+...+. .+.
T Consensus 247 ~~~----~~~v~~~d~~g~~--------------~~~i~~~~~~~~~~af~g~d~~~L~vt~~~~~~~~~~~~~~p~~g~ 308 (326)
T 2ghs_A 247 RWG----EGAVDRYDTDGNH--------------IARYEVPGKQTTCPAFIGPDASRLLVTSAREHLDDDAITANPQHGL 308 (326)
T ss_dssp EET----TTEEEEECTTCCE--------------EEEEECSCSBEEEEEEESTTSCEEEEEEBCTTCCHHHHHHCTTTTC
T ss_pred EeC----CCEEEEECCCCCE--------------EEEEECCCCCcEEEEEecCCCCEEEEEecCCCCChhHhccCCCCce
Confidence 321 1358888874310 22222211 11223476 788899988765431 256
Q ss_pred EEEEeC
Q 004766 329 IIRVDL 334 (732)
Q Consensus 329 l~~~d~ 334 (732)
|+++++
T Consensus 309 ~~~~~~ 314 (326)
T 2ghs_A 309 TFELGI 314 (326)
T ss_dssp EEECSS
T ss_pred EEEEeC
Confidence 777764
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=97.65 E-value=0.038 Score=56.32 Aligned_cols=206 Identities=9% Similarity=-0.004 Sum_probs=123.5
Q ss_pred EEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecc-cccc-eeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCc
Q 004766 134 LIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEAD-ALSW-FKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTE 211 (732)
Q Consensus 134 ~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~-~~~~-~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~ 211 (732)
..++.|.+.++.|.++ +..+ ..|+.++++++..... ...+ ....++++.+.+..||++-.
T Consensus 37 ~~~ld~d~~~~~lyw~-D~~~---~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~-------------- 98 (318)
T 3sov_A 37 AAAVDFVFSHGLIYWS-DVSE---EAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDS-------------- 98 (318)
T ss_dssp EEEEEEEGGGTEEEEE-ETTT---TEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEET--------------
T ss_pred cEEEEEEeCCCEEEEE-ECCC---CcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEEC--------------
Confidence 3467799887777555 4433 3789999987642110 0111 12357888877878887631
Q ss_pred ccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCC
Q 004766 212 TDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDG 291 (732)
Q Consensus 212 ~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 291 (732)
...+|.+.++.+.. ...+.... ...-.++++.|.+.+|++.... . ...|+.+++++..
T Consensus 99 ----~~~~I~~~~~dG~~--~~~l~~~~--~~~P~giavdp~~g~ly~td~~-~--~~~I~r~~~dG~~----------- 156 (318)
T 3sov_A 99 ----ETNRIEVSNLDGSL--RKVLFWQE--LDQPRAIALDPSSGFMYWTDWG-E--VPKIERAGMDGSS----------- 156 (318)
T ss_dssp ----TTTEEEEEETTSCS--CEEEECSS--CSSEEEEEEEGGGTEEEEEECS-S--SCEEEEEETTSCS-----------
T ss_pred ----CCCEEEEEECCCCc--EEEEEeCC--CCCccEEEEeCCCCEEEEEecC-C--CCEEEEEEcCCCC-----------
Confidence 23468888876532 22333221 1223578899988888776532 1 3579999987631
Q ss_pred CCCcEEeee-cccc-eEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecCCEEEEEEec
Q 004766 292 LLPFVKLID-GFDA-QYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLS 369 (732)
Q Consensus 292 ~~~~~~l~~-~~~~-~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~~l~~~~~~ 369 (732)
.+.+.. +... .-..+++++++||+.-. ...+|+++++++.. .+.++... ...-.++.+.. +.+|++...
T Consensus 157 ---~~~~~~~~l~~Pnglavd~~~~~lY~aD~---~~~~I~~~d~dG~~-~~~~~~~~-~~~P~glav~~-~~lywtd~~ 227 (318)
T 3sov_A 157 ---RFIIINSEIYWPNGLTLDYEEQKLYWADA---KLNFIHKSNLDGTN-RQAVVKGS-LPHPFALTLFE-DILYWTDWS 227 (318)
T ss_dssp ---CEEEECSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCS-CEEEECSC-CSCEEEEEEET-TEEEEEETT
T ss_pred ---eEEEEECCCCCccEEEEeccCCEEEEEEC---CCCEEEEEcCCCCc-eEEEecCC-CCCceEEEEeC-CEEEEEecC
Confidence 222322 2111 11258888889987532 35689999998754 45555422 23345677765 788887543
Q ss_pred CCeeEEEEEeCCCCceeeecc
Q 004766 370 DVKYVLQIRDLKNGSLLHQLP 390 (732)
Q Consensus 370 ~g~~~l~~~d~~~g~~~~~l~ 390 (732)
+ ..|.+++..+|+..+.|.
T Consensus 228 ~--~~V~~~~~~~G~~~~~i~ 246 (318)
T 3sov_A 228 T--HSILACNKYTGEGLREIH 246 (318)
T ss_dssp T--TEEEEEETTTCCSCEEEE
T ss_pred C--CeEEEEECCCCCceEEEe
Confidence 3 589999987787645554
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=97.65 E-value=0.09 Score=55.45 Aligned_cols=207 Identities=7% Similarity=0.004 Sum_probs=119.8
Q ss_pred EEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCc----eecccc-cceeeeeEEEEeCCcEEEEEEecCCCCCCCCCC
Q 004766 134 LIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQI----VEADAL-SWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDA 208 (732)
Q Consensus 134 ~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~----~~~~~~-~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~ 208 (732)
..++.|++.++.|.++ +..+ ..|+.+++.++. ...... ......+++..+.++.||++-.
T Consensus 114 ~~~l~~d~~~~~lyws-D~~~---~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~----------- 178 (400)
T 3p5b_L 114 VVALDTEVASNRIYWS-DLSQ---RMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDS----------- 178 (400)
T ss_dssp EEEEEEETTTTEEEEE-ETTT---TEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEET-----------
T ss_pred ceEEeeeeccCceEEE-ecCC---CeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEEC-----------
Confidence 4578899988877655 4333 268888887632 111111 1112356787776778887731
Q ss_pred CCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccc
Q 004766 209 GTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKK 288 (732)
Q Consensus 209 ~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~ 288 (732)
...+|.+.++.+... ..+..... ....++++.|.+.+|+++.... ...|+.+++++..
T Consensus 179 -------~~~~I~~~~~~g~~~--~~l~~~~~--~~P~~iavdp~~g~ly~td~~~---~~~I~~~~~dG~~-------- 236 (400)
T 3p5b_L 179 -------VLGTVSVADTKGVKR--KTLFRENG--SKPRAIVVDPVHGFMYWTDWGT---PAKIKKGGLNGVD-------- 236 (400)
T ss_dssp -------TTTEEEEECTTTCSE--EEEEECSS--CCEEEEEEETTTTEEEEEECSS---SCCEEEEETTSCS--------
T ss_pred -------CCCeEEEEeCCCCce--EEEEeCCC--CCcceEEEecccCeEEEEeCCC---CCEEEEEeCCCCc--------
Confidence 234688888765432 23333221 1235789999988887765322 2469999987632
Q ss_pred cCCCCCcEEeee-cccc-eEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCC-CCCceeEEEEecCCEEEE
Q 004766 289 RDGLLPFVKLID-GFDA-QYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEA-ERDVLESATAVNLNQMIV 365 (732)
Q Consensus 289 ~~~~~~~~~l~~-~~~~-~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~-~~~~l~~~~~~~~~~l~~ 365 (732)
.+.+.. +... .-..+++++++||+.-. ...+|.++|+++.. .+.++... .-..-.++.++. +.+|+
T Consensus 237 ------~~~~~~~~l~~P~glavd~~~~~lY~aD~---~~~~I~~~d~dG~~-~~~~~~~~~~l~~P~gl~v~~-~~lyw 305 (400)
T 3p5b_L 237 ------IYSLVTENIQWPNGITLDLLSGRLYWVDS---KLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVFE-DKVFW 305 (400)
T ss_dssp ------CEEEECSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCC-CEEEEECSSTTSSEEEEEEET-TEEEE
T ss_pred ------cEEEEECCCCceEEEEEEeCCCEEEEEEC---CCCEEEEEeCCCCc-cEEEEeCCCCCCCCEEEEEeC-CEEEE
Confidence 223322 1111 11247888888887532 34689999998765 44454321 112234666665 78888
Q ss_pred EEecCCeeEEEEEeCCCCceeeecc
Q 004766 366 SYLSDVKYVLQIRDLKNGSLLHQLP 390 (732)
Q Consensus 366 ~~~~~g~~~l~~~d~~~g~~~~~l~ 390 (732)
+.... ..|++++..+|+.++.|.
T Consensus 306 td~~~--~~V~~~~~~~G~~~~~i~ 328 (400)
T 3p5b_L 306 TDIIN--EAIFSANRLTGSDVNLLA 328 (400)
T ss_dssp EESSS--CSEEEEESSSCCCCEEEE
T ss_pred ecCCC--CeEEEEEcCCCCceEEEe
Confidence 76444 578889866687655554
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=97.60 E-value=0.07 Score=53.06 Aligned_cols=232 Identities=9% Similarity=-0.002 Sum_probs=126.9
Q ss_pred EEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceeccccc--ceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCc
Q 004766 134 LIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALS--WFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTE 211 (732)
Q Consensus 134 ~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~ 211 (732)
..++.+++||+. |+.+..+ ..|.++|.. ++....... .....++++++||+ |+++..
T Consensus 22 p~~i~~d~~g~l--~v~~~~~---~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~-------------- 80 (300)
T 2qc5_A 22 PYGITSSEDGKV--WFTQHKA---NKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGD-IWFTEN-------------- 80 (300)
T ss_dssp EEEEEECTTSCE--EEEETTT---TEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSC-EEEEET--------------
T ss_pred cceeeECCCCCE--EEEcCCC---CeEEEECCC-CceEEEECCCCCCcceeEEECCCCC-EEEEec--------------
Confidence 457788999983 3333222 268888887 654321111 12246788888886 555431
Q ss_pred ccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCC
Q 004766 212 TDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDG 291 (732)
Q Consensus 212 ~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 291 (732)
....|++++.. +.. ..+..+........++++++|+.. +.. .. ...|+.++.++ .
T Consensus 81 ----~~~~v~~~d~~-g~~---~~~~~~~~~~~~~~i~~~~~g~l~-v~~-~~---~~~i~~~~~~g-~----------- 135 (300)
T 2qc5_A 81 ----GANKIGKLSKK-GGF---TEYPLPQPDSGPYGITEGLNGDIW-FTQ-LN---GDRIGKLTADG-T----------- 135 (300)
T ss_dssp ----TTTEEEEECTT-SCE---EEEECSSTTCCEEEEEECSTTCEE-EEE-TT---TTEEEEECTTS-C-----------
T ss_pred ----CCCeEEEECCC-CCe---EEecCCCCCCCCccceECCCCCEE-EEc-cC---CCeEEEECCCC-C-----------
Confidence 22357777765 221 222222112334578888999743 332 11 23588888763 2
Q ss_pred CCCcEEee-e-cccceE-EEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecCCEEEEEEe
Q 004766 292 LLPFVKLI-D-GFDAQY-EVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYL 368 (732)
Q Consensus 292 ~~~~~~l~-~-~~~~~~-~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~~l~~~~~ 368 (732)
..... . ...... ..++++|+ +|+.... ...|++++. ++. ...+..........++.+.+++.+++...
T Consensus 136 ---~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~---~~~i~~~~~-~g~-~~~~~~~~~~~~~~~i~~d~~g~l~v~~~ 206 (300)
T 2qc5_A 136 ---IYEYDLPNKGSYPAFITLGSDNA-LWFTENQ---NNSIGRITN-TGK-LEEYPLPTNAAAPVGITSGNDGALWFVEI 206 (300)
T ss_dssp ---EEEEECSSTTCCEEEEEECTTSS-EEEEETT---TTEEEEECT-TCC-EEEEECSSTTCCEEEEEECTTSSEEEEET
T ss_pred ---EEEccCCCCCCCceeEEECCCCC-EEEEecC---CCeEEEECC-CCc-EEEeeCCCCCCCcceEEECCCCCEEEEcc
Confidence 11111 1 111111 23567776 6665432 346999998 444 33332222234466777776677877765
Q ss_pred cCCeeEEEEEeCCCCceeeecccc--cceeeEeecccCCcEEEEEEecCCCCceEEEEECCCC
Q 004766 369 SDVKYVLQIRDLKNGSLLHQLPIE--IGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTE 429 (732)
Q Consensus 369 ~~g~~~l~~~d~~~g~~~~~l~~~--~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~ 429 (732)
.. ..|++++. +|+. ..+..+ ...+..+..++++. ++++.. ....++++|+ ++
T Consensus 207 ~~--~~i~~~~~-~g~~-~~~~~~~~~~~~~~i~~d~~g~-l~v~~~---~~~~i~~~~~-~g 260 (300)
T 2qc5_A 207 MG--NKIGRITT-TGEI-SEYDIPTPNARPHAITAGKNSE-IWFTEW---GANQIGRITN-DN 260 (300)
T ss_dssp TT--TEEEEECT-TCCE-EEEECSSTTCCEEEEEECSTTC-EEEEET---TTTEEEEECT-TS
T ss_pred CC--CEEEEEcC-CCcE-EEEECCCCCCCceEEEECCCCC-EEEecc---CCCeEEEECC-CC
Confidence 44 46889998 4664 333333 33455677777776 666542 2468999998 44
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=97.58 E-value=0.0042 Score=61.37 Aligned_cols=192 Identities=8% Similarity=-0.018 Sum_probs=106.4
Q ss_pred EEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecccccc-eeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcc
Q 004766 134 LIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSW-FKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTET 212 (732)
Q Consensus 134 ~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~~~-~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~ 212 (732)
..++.++|||+ | |+.+. + ..|+++|..++......... ....+++++|||+ |+++..
T Consensus 69 p~~i~~~~~g~-l-~v~~~-~---~~i~~~d~~~~~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~--------------- 126 (270)
T 1rwi_B 69 PQGLAVDGAGT-V-YVTDF-N---NRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGA-VYVADR--------------- 126 (270)
T ss_dssp CCCEEECTTCC-E-EEEET-T---TEEEEECTTCSCCEECCCCSCSSEEEEEECTTCC-EEEEEG---------------
T ss_pred cceeEECCCCC-E-EEEcC-C---CEEEEEeCCCceEeeeecCCcCCCcceEECCCCC-EEEEEC---------------
Confidence 34788999998 3 33333 2 26899998876543221111 1246789999997 555431
Q ss_pred cCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCC
Q 004766 213 DSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGL 292 (732)
Q Consensus 213 ~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~ 292 (732)
....|++++.++... ..... .......++++++||+ |++... . ...|++++..+..
T Consensus 127 ---~~~~i~~~~~~~~~~---~~~~~-~~~~~p~~i~~~~~g~-l~v~~~-~---~~~i~~~~~~~~~------------ 182 (270)
T 1rwi_B 127 ---GNNRVVKLAAGSKTQ---TVLPF-TGLNDPDGVAVDNSGN-VYVTDT-D---NNRVVKLEAESNN------------ 182 (270)
T ss_dssp ---GGTEEEEECTTCCSC---EECCC-CSCCSCCCEEECTTCC-EEEEEG-G---GTEEEEECTTTCC------------
T ss_pred ---CCCEEEEEECCCcee---Eeecc-ccCCCceeEEEeCCCC-EEEEEC-C---CCEEEEEecCCCc------------
Confidence 234677776554321 11111 1111234678999998 444332 2 2468888877632
Q ss_pred CCcEEe-eecccc-eEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecCCEEEEEEecC
Q 004766 293 LPFVKL-IDGFDA-QYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSD 370 (732)
Q Consensus 293 ~~~~~l-~~~~~~-~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~~l~~~~~~~ 370 (732)
.... ..+... .-..++++| .+|+.... ...|++++.++.. ...+.........++.+.+++.+++....+
T Consensus 183 --~~~~~~~~~~~p~~i~~d~~g-~l~v~~~~---~~~v~~~~~~~~~--~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~ 254 (270)
T 1rwi_B 183 --QVVLPFTDITAPWGIAVDEAG-TVYVTEHN---TNQVVKLLAGSTT--STVLPFTGLNTPLAVAVDSDRTVYVADRGN 254 (270)
T ss_dssp --EEECCCSSCCSEEEEEECTTC-CEEEEETT---TSCEEEECTTCSC--CEECCCCSCSCEEEEEECTTCCEEEEEGGG
T ss_pred --eEeecccCCCCceEEEECCCC-CEEEEECC---CCcEEEEcCCCCc--ceeeccCCCCCceeEEECCCCCEEEEECCC
Confidence 1111 111111 112466776 67765543 3468999987654 222222212346678887766788776655
Q ss_pred CeeEEEEEeCC
Q 004766 371 VKYVLQIRDLK 381 (732)
Q Consensus 371 g~~~l~~~d~~ 381 (732)
.+|.++++.
T Consensus 255 --~~v~~~~~~ 263 (270)
T 1rwi_B 255 --DRVVKLTSL 263 (270)
T ss_dssp --TEEEEECCC
T ss_pred --CEEEEEcCC
Confidence 478888875
|
| >4ebb_A Dipeptidyl peptidase 2; hydrolase; HET: MSE NAG; 2.00A {Homo sapiens} PDB: 3jyh_A* 3n0t_A* | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00036 Score=75.43 Aligned_cols=116 Identities=23% Similarity=0.180 Sum_probs=78.0
Q ss_pred CCccEEEEEcCCCCccCCCCc--ChhHHHHHHhcCcEEEEEcccCCCCCch---hHHh--cccccCCccHHHHHHHHHHH
Q 004766 479 GSHPCLLYGYGGFNISVTPSF--SVSRTILMRHLGAVFCIANIRGGGEYGE---EWHK--GGALAKKQNCFDDFISASEY 551 (732)
Q Consensus 479 ~~~P~vv~~hG~~~~~~~~~~--~~~~~~~l~~~G~~v~~~~~rG~g~~g~---~~~~--~~~~~~~~~~~~D~~~~~~~ 551 (732)
+..|++|++ ||-+.. .... ...+..+..+.|..+++..+|=-|+.-. ...+ .-+...-...+.|+...+++
T Consensus 41 ~~gPIfl~~-gGEg~~-~~~~~~~g~~~~lA~~~~a~~v~lEHRyYG~S~P~~~~st~~~nL~yLt~eQALaD~a~fi~~ 118 (472)
T 4ebb_A 41 GEGPIFFYT-GNEGDV-WAFANNSAFVAELAAERGALLVFAEHRYYGKSLPFGAQSTQRGHTELLTVEQALADFAELLRA 118 (472)
T ss_dssp TTCCEEEEE-CCSSCH-HHHHHHCHHHHHHHHHHTCEEEEECCTTSTTCCTTGGGGGSTTSCTTCSHHHHHHHHHHHHHH
T ss_pred CCCcEEEEE-CCCccc-cccccCccHHHHHHHHhCCeEEEEecccccCCcCCCCCCccccccccCCHHHHHHHHHHHHHH
Confidence 447988888 443321 1111 1123456777899999999996444321 1111 01122334568899999998
Q ss_pred HHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCcc
Q 004766 552 LISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVM 596 (732)
Q Consensus 552 l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~ 596 (732)
+...--....+++++|+|+||.|++++-.++|++|.|+++.++++
T Consensus 119 ~k~~~~~~~~pwI~~GGSY~G~LaAW~R~kYP~lv~ga~ASSApv 163 (472)
T 4ebb_A 119 LRRDLGAQDAPAIAFGGSYGGMLSAYLRMKYPHLVAGALAASAPV 163 (472)
T ss_dssp HHHHTTCTTCCEEEEEETHHHHHHHHHHHHCTTTCSEEEEETCCT
T ss_pred HHhhcCCCCCCEEEEccCccchhhHHHHhhCCCeEEEEEecccce
Confidence 876633344789999999999999999999999999998876543
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=97.58 E-value=0.068 Score=56.29 Aligned_cols=243 Identities=10% Similarity=0.046 Sum_probs=123.4
Q ss_pred EEEEEEECCC-----Cceeccc---ccceeeeeEEE-----------E--eCCcEEEEEEecCCCCCCCCCCCCcccCCc
Q 004766 158 ATIKLMRIED-----QIVEADA---LSWFKFSSIAW-----------T--HDSKGFFYSRYPAPKEGKDMDAGTETDSNL 216 (732)
Q Consensus 158 ~~i~v~dl~~-----g~~~~~~---~~~~~~~~~~W-----------s--pDg~~l~y~~~~~~~~~~~~~~~~~~~~~~ 216 (732)
-.|-++|++. |+++... ..+-...++.| + +|+++|+... .+
T Consensus 43 d~la~vDvdp~s~ty~~vi~~~~~p~~gde~HH~gwn~css~~~~~~~~~~~r~~l~v~~------------------l~ 104 (462)
T 2ece_A 43 DFIAVVDVNPKSETYSKIVHKVELPYINDELHHFGWNACSSALCPNGKPNIERRFLIVPG------------------LR 104 (462)
T ss_dssp CEEEEEECCTTSTTTTSEEEEEECSSSCCCBCCCEESCCGGGGSTTCCTTCCSCEEEEEB------------------TT
T ss_pred CeEEEEECCCCCCCcceEEEEEECCCCCCcccccchhhhhhhcccccCCCccCCEEEEcc------------------CC
Confidence 4677788875 4433211 11112356677 8 8998888763 34
Q ss_pred ccEEEEEECCCCCCCCeEEEecC-------CCCeeEEEeEEecCCcEEEEEEecC--CcceEEEEEEeCCCCCCCccccc
Q 004766 217 YHEFYYHFLGTKQSEDILCWKDP-------EHPKYIFSGHVTEDGQYLVMCIEEN--CDPVNKVYYCDLSALPEGLEGFK 287 (732)
Q Consensus 217 ~~~v~~~~lgt~~~~~~~v~~~~-------~~~~~~~~~~~SpDg~~l~~~~~~~--~~~~~~l~~~d~~~~~~~~~~~~ 287 (732)
..+|++.+..+.+..-.++-... -.-..-..+..+||| |+++...+ ......+.++|.++.+.
T Consensus 105 s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG--i~Vs~~g~~~g~~~g~v~vlD~~T~~v------ 176 (462)
T 2ece_A 105 SSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA--IYISALGNEEGEGPGGILMLDHYSFEP------ 176 (462)
T ss_dssp TCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC--EEEEEEEETTSCSCCEEEEECTTTCCE------
T ss_pred CCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe--EEEEcCCCcCCCCCCeEEEEECCCCeE------
Confidence 56799999987654433322110 011123456789999 44443222 12246799999887431
Q ss_pred ccCCCCCcEEeeeccc---ceEE-EEEecCCeEEEEeCCC----------------CCCceEEEEeCCCCCCceEeccCC
Q 004766 288 KRDGLLPFVKLIDGFD---AQYE-VIANDDTVFTFLTNKD----------------APKYKIIRVDLKEPNDWFEVIPEA 347 (732)
Q Consensus 288 ~~~~~~~~~~l~~~~~---~~~~-~~s~dg~~l~~~s~~~----------------~~~~~l~~~d~~~~~~~~~l~~~~ 347 (732)
...+..+.. ..|. .|+|+++. ++.++.+ ....+|..+|+++++...++-...
T Consensus 177 -------~~~~~~~~~~~~~~Yd~~~~p~~~~-mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~ 248 (462)
T 2ece_A 177 -------LGKWEIDRGDQYLAYDFWWNLPNEV-LVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGE 248 (462)
T ss_dssp -------EEECCSBCTTCCCCCCEEEETTTTE-EEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCT
T ss_pred -------EEEEccCCCCccccceEEECCCCCE-EEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCC
Confidence 112211111 1222 36898884 4456521 113579999998764223332211
Q ss_pred CCCceeEEEE--ecCC-EEEEEEe---cCCeeEEEEEeCCCCce--eeecccc------------------cceeeEeec
Q 004766 348 ERDVLESATA--VNLN-QMIVSYL---SDVKYVLQIRDLKNGSL--LHQLPIE------------------IGSVNAISA 401 (732)
Q Consensus 348 ~~~~l~~~~~--~~~~-~l~~~~~---~~g~~~l~~~d~~~g~~--~~~l~~~------------------~g~v~~~~~ 401 (732)
+...-..+.+ ++++ .+|+... .+-.++|+++..+.|+. .+.|.++ ......+.+
T Consensus 249 ~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~l 328 (462)
T 2ece_A 249 ENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDI 328 (462)
T ss_dssp TEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEE
T ss_pred CCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEE
Confidence 1122223444 5543 4555444 12224565544433421 1111111 123456678
Q ss_pred ccCCcEEEEEEecCCCCceEEEEECCCCCCceEEEEe
Q 004766 402 RREDSVVFISFTSFLIPGIVYQCNLKTETPEMKIFRE 438 (732)
Q Consensus 402 s~d~~~l~~~~ss~~~p~~~y~~d~~~~~~~~~~l~~ 438 (732)
|+|++.||++-. ....+..||..... ..+++..
T Consensus 329 S~DGrfLYVSnr---g~d~VavfdV~d~~-~~~lv~~ 361 (462)
T 2ece_A 329 SLDDKFLYLSLW---GIGEVRQYDISNPF-KPVLTGK 361 (462)
T ss_dssp CTTSCEEEEEET---TTTEEEEEECSSTT-SCEEEEE
T ss_pred CCCCCEEEEEeC---CCCEEEEEEecCCC-CcEEEEE
Confidence 999998876543 23688888875332 2444443
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=97.57 E-value=0.091 Score=53.38 Aligned_cols=206 Identities=7% Similarity=0.004 Sum_probs=119.7
Q ss_pred EEeEEECCCCcEEEEEEeccCCceEEEEEEECCC----Cceecccccc-eeeeeEEEEeCCcEEEEEEecCCCCCCCCCC
Q 004766 134 LIKVSVSEDAKYLAYALSYSGSDWATIKLMRIED----QIVEADALSW-FKFSSIAWTHDSKGFFYSRYPAPKEGKDMDA 208 (732)
Q Consensus 134 ~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~----g~~~~~~~~~-~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~ 208 (732)
..++.|++++++|.++ +..+ ..|+.+++++ .......... ....++++.+.++.||++-.
T Consensus 32 p~g~~~d~~~~~ly~~-D~~~---~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~----------- 96 (316)
T 1ijq_A 32 VVALDTEVASNRIYWS-DLSQ---RMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDS----------- 96 (316)
T ss_dssp EEEEEEETTTTEEEEE-ETTT---TEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEET-----------
T ss_pred eEEEEEEeCCCEEEEE-ECCC---CcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEEC-----------
Confidence 3578899988877665 4332 3789999876 2211111011 12367888877888887632
Q ss_pred CCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccc
Q 004766 209 GTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKK 288 (732)
Q Consensus 209 ~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~ 288 (732)
...+|.+.++.+.. ...+..... ....+++++|++.+|++..... ...|+.+++++..
T Consensus 97 -------~~~~I~~~~~~g~~--~~~~~~~~~--~~P~~iavdp~~g~ly~~d~~~---~~~I~~~~~dG~~-------- 154 (316)
T 1ijq_A 97 -------VLGTVSVADTKGVK--RKTLFRENG--SKPRAIVVDPVHGFMYWTDWGT---PAKIKKGGLNGVD-------- 154 (316)
T ss_dssp -------TTTEEEEEETTSSS--EEEEEECTT--CCEEEEEEETTTTEEEEEECSS---SCEEEEEETTSCC--------
T ss_pred -------CCCEEEEEeCCCCc--eEEEEECCC--CCcceEEeCCCCCEEEEEccCC---CCeEEEEcCCCCC--------
Confidence 23468888876432 123333211 2335788999999887765321 2579999887621
Q ss_pred cCCCCCcEEeee-ccc-ceEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCC-CCCceeEEEEecCCEEEE
Q 004766 289 RDGLLPFVKLID-GFD-AQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEA-ERDVLESATAVNLNQMIV 365 (732)
Q Consensus 289 ~~~~~~~~~l~~-~~~-~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~-~~~~l~~~~~~~~~~l~~ 365 (732)
.+.+.. ... ..-..+++++++||+.-. ...+|.++|+++.. .+.+.... ......++.+.. +.+|+
T Consensus 155 ------~~~~~~~~~~~P~gla~d~~~~~lY~~D~---~~~~I~~~d~dg~~-~~~~~~~~~~~~~P~giav~~-~~ly~ 223 (316)
T 1ijq_A 155 ------IYSLVTENIQWPNGITLDLLSGRLYWVDS---KLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVFE-DKVFW 223 (316)
T ss_dssp ------EEEEECSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCS-CEEEEECTTTTSSEEEEEEET-TEEEE
T ss_pred ------eEEEEECCCCCceEEEEeccCCEEEEEEC---CCCeEEEEecCCCc-eEEEeecCCccCCcEEEEEEC-CEEEE
Confidence 222222 111 112247888889987543 24589999998654 34444321 112345677765 78888
Q ss_pred EEecCCeeEEEEEeCCCCceeeec
Q 004766 366 SYLSDVKYVLQIRDLKNGSLLHQL 389 (732)
Q Consensus 366 ~~~~~g~~~l~~~d~~~g~~~~~l 389 (732)
+...+ .+|.+++..+|+..+.|
T Consensus 224 ~d~~~--~~V~~~~~~~g~~~~~i 245 (316)
T 1ijq_A 224 TDIIN--EAIFSANRLTGSDVNLL 245 (316)
T ss_dssp EETTT--TEEEEEETTTCCCCEEE
T ss_pred EECCC--CeEEEEeCCCCcceEEE
Confidence 76444 57889987667654444
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=97.53 E-value=0.012 Score=57.40 Aligned_cols=192 Identities=13% Similarity=0.019 Sum_probs=107.7
Q ss_pred EEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCccc
Q 004766 134 LIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETD 213 (732)
Q Consensus 134 ~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~ 213 (732)
..++.++ || .|..+....| ...|+++|+++|+.+....-.....+..-+++++.||...
T Consensus 45 tqGL~~~-~~-~LyestG~~g--~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~lt----------------- 103 (262)
T 3nol_A 45 TEGFFYR-NG-YFYESTGLNG--RSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLT----------------- 103 (262)
T ss_dssp EEEEEEE-TT-EEEEEEEETT--EEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEE-----------------
T ss_pred cceEEEE-CC-EEEEECCCCC--CceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEE-----------------
Confidence 3578888 65 4544433333 3689999999999654321111122333556788888763
Q ss_pred CCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCCC
Q 004766 214 SNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLL 293 (732)
Q Consensus 214 ~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~ 293 (732)
++...++.++..+......+ ..+. .+..+++||+.|+.+. + .+.|+.+|.++.+
T Consensus 104 -w~~~~v~v~D~~t~~~~~ti--~~~~-----eG~glt~dg~~L~~Sd--G---s~~i~~iDp~T~~------------- 157 (262)
T 3nol_A 104 -WKNGLGFVWNIRNLRQVRSF--NYDG-----EGWGLTHNDQYLIMSD--G---TPVLRFLDPESLT------------- 157 (262)
T ss_dssp -SSSSEEEEEETTTCCEEEEE--ECSS-----CCCCEEECSSCEEECC--S---SSEEEEECTTTCS-------------
T ss_pred -eeCCEEEEEECccCcEEEEE--ECCC-----CceEEecCCCEEEEEC--C---CCeEEEEcCCCCe-------------
Confidence 45568999998876432221 1111 1245678999876542 2 3569999988742
Q ss_pred CcEEeeec---ccc----eEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEe-----ccC-----CCCCceeEEE
Q 004766 294 PFVKLIDG---FDA----QYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEV-----IPE-----AERDVLESAT 356 (732)
Q Consensus 294 ~~~~l~~~---~~~----~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l-----~~~-----~~~~~l~~~~ 356 (732)
....+... ... +.. |. +| +||...-. ...|+++|.++++....+ .+. .....+.+++
T Consensus 158 v~~~I~V~~~g~~~~~lNELe-~~-~G-~lyan~w~---~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA 231 (262)
T 3nol_A 158 PVRTITVTAHGEELPELNELE-WV-DG-EIFANVWQ---TNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIA 231 (262)
T ss_dssp EEEEEECEETTEECCCEEEEE-EE-TT-EEEEEETT---SSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEE
T ss_pred EEEEEEeccCCccccccceeE-EE-CC-EEEEEEcc---CCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEE
Confidence 01222111 110 112 33 45 67743322 237999999988621111 111 1235788999
Q ss_pred EecC-CEEEEEEecCCeeEEEEEeC
Q 004766 357 AVNL-NQMIVSYLSDVKYVLQIRDL 380 (732)
Q Consensus 357 ~~~~-~~l~~~~~~~g~~~l~~~d~ 380 (732)
+.++ ++||++...= ++|+.+.+
T Consensus 232 ~dp~~~~lfVTGK~W--p~~~ev~~ 254 (262)
T 3nol_A 232 WDKEHHRLFVTGKLW--PKVFEITL 254 (262)
T ss_dssp EETTTTEEEEEETTC--SEEEEEEE
T ss_pred EcCCCCEEEEECCCC--CceEEEEE
Confidence 9975 6677765433 56665544
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.50 E-value=0.024 Score=54.69 Aligned_cols=194 Identities=14% Similarity=0.155 Sum_probs=116.2
Q ss_pred eeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEE
Q 004766 181 SSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMC 260 (732)
Q Consensus 181 ~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~ 260 (732)
.++.|++ ..||.+.-. .....|..+++.+++..... ..+. ..+ +...+++|..|+..
T Consensus 24 qGL~~~~--~~LyestG~----------------~g~S~v~~vD~~tgkv~~~~--~l~~-~~f--geGi~~~~~~ly~l 80 (243)
T 3mbr_X 24 EGLFYLR--GHLYESTGE----------------TGRSSVRKVDLETGRILQRA--EVPP-PYF--GAGIVAWRDRLIQL 80 (243)
T ss_dssp EEEEEET--TEEEEEECC----------------TTSCEEEEEETTTCCEEEEE--ECCT-TCC--EEEEEEETTEEEEE
T ss_pred ccEEEEC--CEEEEECCC----------------CCCceEEEEECCCCCEEEEE--eCCC-Ccc--eeEEEEeCCEEEEE
Confidence 5788874 467665421 12357999999887543221 1222 122 34456678887666
Q ss_pred EecCCcceEEEEEEeCCCCCCCcccccccCCCCCcEEeeecccceEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCc
Q 004766 261 IEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDW 340 (732)
Q Consensus 261 ~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~ 340 (732)
... .+.++++|.++.. ....+..+. ..+ .+++|+++||+ ++ + ..+|+.+|.++.+..
T Consensus 81 tw~----~~~v~v~D~~tl~-------------~~~ti~~~~-~Gw-glt~dg~~L~v-Sd--g-s~~l~~iDp~t~~~~ 137 (243)
T 3mbr_X 81 TWR----NHEGFVYDLATLT-------------PRARFRYPG-EGW-ALTSDDSHLYM-SD--G-TAVIRKLDPDTLQQV 137 (243)
T ss_dssp ESS----SSEEEEEETTTTE-------------EEEEEECSS-CCC-EEEECSSCEEE-EC--S-SSEEEEECTTTCCEE
T ss_pred Eee----CCEEEEEECCcCc-------------EEEEEeCCC-Cce-EEeeCCCEEEE-EC--C-CCeEEEEeCCCCeEE
Confidence 432 3579999988742 122222221 223 25678888775 55 2 347999999887622
Q ss_pred eEeccCC---CCCceeEEEEecCCEEEEEEecCCeeEEEEEeCCCCceeeecccc------------c-ceeeEeecccC
Q 004766 341 FEVIPEA---ERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIE------------I-GSVNAISARRE 404 (732)
Q Consensus 341 ~~l~~~~---~~~~l~~~~~~~~~~l~~~~~~~g~~~l~~~d~~~g~~~~~l~~~------------~-g~v~~~~~s~d 404 (732)
..+--.. +-..+..+.+.+ +.+++..... ..|.++|+++|+.+..|.+. . ....+++.+++
T Consensus 138 ~~I~V~~~g~~~~~lNeLe~~~-G~lyanvw~s--~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~ 214 (243)
T 3mbr_X 138 GSIKVTAGGRPLDNLNELEWVN-GELLANVWLT--SRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAE 214 (243)
T ss_dssp EEEECEETTEECCCEEEEEEET-TEEEEEETTT--TEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETT
T ss_pred EEEEEccCCcccccceeeEEeC-CEEEEEECCC--CeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCC
Confidence 2221111 113455677776 7888666433 48999999999987777642 1 23467788888
Q ss_pred CcEEEEEEecCCCCceEEEEEC
Q 004766 405 DSVVFISFTSFLIPGIVYQCNL 426 (732)
Q Consensus 405 ~~~l~~~~ss~~~p~~~y~~d~ 426 (732)
+++++++---| +.+|.+.+
T Consensus 215 ~~~lfVTGK~w---p~~~~v~~ 233 (243)
T 3mbr_X 215 HDRLFVTGKRW---PMLYEIRL 233 (243)
T ss_dssp TTEEEEEETTC---SEEEEEEE
T ss_pred CCEEEEECCCC---CcEEEEEE
Confidence 88888765554 56776654
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.47 E-value=0.026 Score=54.46 Aligned_cols=194 Identities=13% Similarity=0.025 Sum_probs=107.1
Q ss_pred EeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccC
Q 004766 135 IKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDS 214 (732)
Q Consensus 135 ~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~ 214 (732)
.++.+++ .+|..+....| ...|+++|+++|+.+....-.....+..-++++++||...
T Consensus 24 qGL~~~~--~~LyestG~~g--~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~lt------------------ 81 (243)
T 3mbr_X 24 EGLFYLR--GHLYESTGETG--RSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLT------------------ 81 (243)
T ss_dssp EEEEEET--TEEEEEECCTT--SCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEE------------------
T ss_pred ccEEEEC--CEEEEECCCCC--CceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEE------------------
Confidence 5788876 45555543333 3589999999999664322111123334455678888763
Q ss_pred CcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCCCC
Q 004766 215 NLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLP 294 (732)
Q Consensus 215 ~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~ 294 (732)
++...++.++..+...... +..+. . +..+++||+.|+.+ ++ ...|+++|.++.. .
T Consensus 82 w~~~~v~v~D~~tl~~~~t--i~~~~-~----Gwglt~dg~~L~vS--dg---s~~l~~iDp~t~~-------------~ 136 (243)
T 3mbr_X 82 WRNHEGFVYDLATLTPRAR--FRYPG-E----GWALTSDDSHLYMS--DG---TAVIRKLDPDTLQ-------------Q 136 (243)
T ss_dssp SSSSEEEEEETTTTEEEEE--EECSS-C----CCEEEECSSCEEEE--CS---SSEEEEECTTTCC-------------E
T ss_pred eeCCEEEEEECCcCcEEEE--EeCCC-C----ceEEeeCCCEEEEE--CC---CCeEEEEeCCCCe-------------E
Confidence 4556899999877542221 12121 1 23556899887654 23 2569999988742 0
Q ss_pred cEEeeecccc----eEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCce--E---eccC------CCCCceeEEEEec
Q 004766 295 FVKLIDGFDA----QYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWF--E---VIPE------AERDVLESATAVN 359 (732)
Q Consensus 295 ~~~l~~~~~~----~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~--~---l~~~------~~~~~l~~~~~~~ 359 (732)
...+....+. ...-....+.++|.-. .. ...|.++|.++++... . |.+. .....+.++++.+
T Consensus 137 ~~~I~V~~~g~~~~~lNeLe~~~G~lyanv-w~--s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~ 213 (243)
T 3mbr_X 137 VGSIKVTAGGRPLDNLNELEWVNGELLANV-WL--TSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDA 213 (243)
T ss_dssp EEEEECEETTEECCCEEEEEEETTEEEEEE-TT--TTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEET
T ss_pred EEEEEEccCCcccccceeeEEeCCEEEEEE-CC--CCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcC
Confidence 1222111110 0111112244666433 22 2379999999886211 1 1111 1235789999987
Q ss_pred C-CEEEEEEecCCeeEEEEEeC
Q 004766 360 L-NQMIVSYLSDVKYVLQIRDL 380 (732)
Q Consensus 360 ~-~~l~~~~~~~g~~~l~~~d~ 380 (732)
+ ++|+++...= ++|+.+.+
T Consensus 214 ~~~~lfVTGK~w--p~~~~v~~ 233 (243)
T 3mbr_X 214 EHDRLFVTGKRW--PMLYEIRL 233 (243)
T ss_dssp TTTEEEEEETTC--SEEEEEEE
T ss_pred CCCEEEEECCCC--CcEEEEEE
Confidence 4 6777775443 56766654
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.46 E-value=0.046 Score=62.88 Aligned_cols=222 Identities=10% Similarity=-0.010 Sum_probs=122.8
Q ss_pred EEEEEECCCCceecccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCCcccEEEEEECCCCC--CCCeEEE
Q 004766 159 TIKLMRIEDQIVEADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQ--SEDILCW 236 (732)
Q Consensus 159 ~i~v~dl~~g~~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~--~~~~~v~ 236 (732)
.|+.+++.++.............+++|.+.+..||++.. ...+|++.++.... .....+.
T Consensus 405 ~Ir~i~l~~~~~~~l~~~~~~~~gl~~d~~~~~lY~sD~------------------~~~~I~~~~l~g~~~~~~~~~vi 466 (791)
T 3m0c_C 405 EVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDL------------------SQRMICSTQLDRAHGVSSYDTVI 466 (791)
T ss_dssp SEEEECTTSCCCEEEECSCSSEEEEEEETTTTEEEEEET------------------TTTEEEEEEC--------CEEEE
T ss_pred ceeEeeccCCcceeeecCCCceEEEeecccCCeeEEeec------------------cceeEEEEeccCCCCCcceeEEE
Confidence 577788876653221111112367899988888888742 23468888886431 1223444
Q ss_pred ecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCCCCcEEeee-cccce-EEEEEecCC
Q 004766 237 KDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLID-GFDAQ-YEVIANDDT 314 (732)
Q Consensus 237 ~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~-~~~~s~dg~ 314 (732)
.... ....++++.+.++.|++.... ...|+++++++.. .+.+.. ..... -.++.|.++
T Consensus 467 ~~~l--~~P~GLAvD~~~~~LY~tD~~----~~~I~v~~ldG~~--------------~~~l~~~~l~~P~gIaVDp~~g 526 (791)
T 3m0c_C 467 SRDI--QAPDGLAVDWIHSNIYWTDSV----LGTVSVADTKGVK--------------RKTLFRENGSKPRAIVVDPVHG 526 (791)
T ss_dssp CSSC--SCCCEEEEETTTTEEEEEETT----TTEEEEEETTSSS--------------EEEEEECTTCCEEEEEEETTTT
T ss_pred ecCC--CCcceeeeeecCCcEEEEecC----CCeEEEEeCCCCe--------------EEEEEeCCCCCcceEEEecCCC
Confidence 3211 122468888899988776432 3579999988632 233332 22211 124677777
Q ss_pred eEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEec-CCEEEEEEecCCeeEEEEEeCCCCceeeeccccc
Q 004766 315 VFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVN-LNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEI 393 (732)
Q Consensus 315 ~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~-~~~l~~~~~~~g~~~l~~~d~~~g~~~~~l~~~~ 393 (732)
.||+. +.+ ...+|.++++++.. .+.++... -..-.++.+.. +++||++-... ..|++++++ |...+.+....
T Consensus 527 ~LYwt-D~g-~~~~I~~~~~dG~~-~~~lv~~~-l~~P~GLavD~~~~~LYwaD~~~--~~I~~~d~d-G~~~~~v~~~~ 599 (791)
T 3m0c_C 527 FMYWT-DWG-TPAKIKKGGLNGVD-IYSLVTEN-IQWPNGITLDLLSGRLYWVDSKL--HSISSIDVN-GGNRKTILEDE 599 (791)
T ss_dssp EEEEE-ECS-SSCEEEEEETTSCC-EEEEECSS-CSCEEEEEEETTTTEEEEEETTT--TEEEEEETT-SCSCEEEEECT
T ss_pred CEEEe-cCC-CCCeEEEEecCCCc-eEEEEeCC-CCCceEEEEecCCCeEEEEeCCC--CcEEEEecC-CCceEEEecCC
Confidence 77764 332 23579999998765 45555433 23456788873 47888875443 689999997 65433432111
Q ss_pred ---ceeeEeecccCCcEEEEEEecCCCCceEEEEECCCCC
Q 004766 394 ---GSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 430 (732)
Q Consensus 394 ---g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~~ 430 (732)
....+++. +++.||++- ..-..|+++|..+|+
T Consensus 600 ~~l~~P~glav--~~~~lYwtD---~~~~~I~~~dk~tG~ 634 (791)
T 3m0c_C 600 KRLAHPFSLAV--FEDKVFWTD---IINEAIFSANRLTGS 634 (791)
T ss_dssp TTTSSEEEEEE--ETTEEEEEE---TTTTEEEEEETTTCC
T ss_pred CccCCCCEEEE--eCCEEEEEE---CCCCEEEEEeCCCCc
Confidence 11112332 344555432 223567777765554
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=97.46 E-value=0.032 Score=56.81 Aligned_cols=240 Identities=12% Similarity=0.073 Sum_probs=125.2
Q ss_pred eEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecccc--------------------cceeeeeEEEEeCCcEEEEE
Q 004766 136 KVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADAL--------------------SWFKFSSIAWTHDSKGFFYS 195 (732)
Q Consensus 136 ~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~--------------------~~~~~~~~~WspDg~~l~y~ 195 (732)
++.|+|+|+.+ |+.. .+ ..|+.+|..+++...... ......++++.+++..|+++
T Consensus 23 ~i~~d~~g~~l-~v~~-~~---~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~ 97 (322)
T 2fp8_A 23 SFTFDSTNKGF-YTSV-QD---GRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIV 97 (322)
T ss_dssp CEECCTTCSSE-EEEC-TT---SEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEE
T ss_pred EEEEcCCCCEE-EEEc-CC---CeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEE
Confidence 67889998733 3322 22 368888887765321100 00123578888733456665
Q ss_pred EecCCCCCCCCCCCCcccCCcccEEEEEECCCCCCCCeEEEecCCC--CeeEEEeEEec-CCcEEEEEEecC--------
Q 004766 196 RYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEH--PKYIFSGHVTE-DGQYLVMCIEEN-------- 264 (732)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~--~~~~~~~~~Sp-Dg~~l~~~~~~~-------- 264 (732)
.. ...|++++..++.. ..+...... .....++++++ ||+ |++.....
T Consensus 98 d~-------------------~~~i~~~d~~~g~~--~~~~~~~~~~~~~~p~~i~~d~~~G~-l~v~d~~~~~~~~~~~ 155 (322)
T 2fp8_A 98 DC-------------------YYHLSVVGSEGGHA--TQLATSVDGVPFKWLYAVTVDQRTGI-VYFTDVSTLYDDRGVQ 155 (322)
T ss_dssp ET-------------------TTEEEEECTTCEEC--EEEESEETTEECSCEEEEEECTTTCC-EEEEESCSSCCTTCHH
T ss_pred EC-------------------CCCEEEEeCCCCEE--EEecccCCCCcccccceEEEecCCCE-EEEECCcccccccccc
Confidence 31 12366666543321 122211111 11345788999 885 44443211
Q ss_pred -----CcceEEEEEEeCCCCCCCcccccccCCCCCcEEeeeccc-ceEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCC
Q 004766 265 -----CDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFD-AQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPN 338 (732)
Q Consensus 265 -----~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~ 338 (732)
......|+.++..++. ...+..... ..-..+++||+.||+.-.. +.+|+++++++..
T Consensus 156 ~~~~~~~~~g~v~~~d~~~~~--------------~~~~~~~~~~p~gia~~~dg~~lyv~d~~---~~~I~~~~~~~~~ 218 (322)
T 2fp8_A 156 QIMDTSDKTGRLIKYDPSTKE--------------TTLLLKELHVPGGAEVSADSSFVLVAEFL---SHQIVKYWLEGPK 218 (322)
T ss_dssp HHHHHTCCCEEEEEEETTTTE--------------EEEEEEEESCCCEEEECTTSSEEEEEEGG---GTEEEEEESSSTT
T ss_pred eehcccCCCceEEEEeCCCCE--------------EEEeccCCccCcceEECCCCCEEEEEeCC---CCeEEEEECCCCc
Confidence 0123679999876532 222222211 1122588998888875332 4579999987632
Q ss_pred --CceEeccCCCCCceeEEEEecCCEEEEEEec--------CCeeEEEEEeCCCCceeeecccccc----eeeEeecccC
Q 004766 339 --DWFEVIPEAERDVLESATAVNLNQMIVSYLS--------DVKYVLQIRDLKNGSLLHQLPIEIG----SVNAISARRE 404 (732)
Q Consensus 339 --~~~~l~~~~~~~~l~~~~~~~~~~l~~~~~~--------~g~~~l~~~d~~~g~~~~~l~~~~g----~v~~~~~s~d 404 (732)
..+.+.. .+ . ..++.+.+++.+++.... .....|.++|.+ |+.++.+..+.+ .+..+.. +
T Consensus 219 ~~~~~~~~~-~~-g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~--~ 292 (322)
T 2fp8_A 219 KGTAEVLVK-IP-N-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQE--H 292 (322)
T ss_dssp TTCEEEEEE-CS-S-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEE--E
T ss_pred CCccceEEe-CC-C-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEE--e
Confidence 2233322 21 2 566777776677777654 224679999986 876666665532 2222322 3
Q ss_pred CcEEEEEEecCCCCceEEEEECCC
Q 004766 405 DSVVFISFTSFLIPGIVYQCNLKT 428 (732)
Q Consensus 405 ~~~l~~~~ss~~~p~~~y~~d~~~ 428 (732)
+++|+++- .....+.++++..
T Consensus 293 ~g~L~v~~---~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 293 DGLLYIGT---LFHGSVGILVYDK 313 (322)
T ss_dssp TTEEEEEC---SSCSEEEEEEC--
T ss_pred CCEEEEee---cCCCceEEEeccc
Confidence 45566542 2234677777643
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=97.45 E-value=0.01 Score=60.79 Aligned_cols=160 Identities=9% Similarity=0.031 Sum_probs=94.7
Q ss_pred eEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCCCCcEEeeec-cc-ceEEEEEecCCeEEEEeC
Q 004766 244 YIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDG-FD-AQYEVIANDDTVFTFLTN 321 (732)
Q Consensus 244 ~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~-~~-~~~~~~s~dg~~l~~~s~ 321 (732)
...+++|+|||+ |++.... ...|+++|.+++. ...+... .. .....++++|+ +++.+.
T Consensus 46 ~~~~~~~~~~g~-l~~~~~~----~~~i~~~d~~~~~--------------~~~~~~~~~~~~~~i~~~~dg~-l~v~~~ 105 (333)
T 2dg1_A 46 QLEGLNFDRQGQ-LFLLDVF----EGNIFKINPETKE--------------IKRPFVSHKANPAAIKIHKDGR-LFVCYL 105 (333)
T ss_dssp CEEEEEECTTSC-EEEEETT----TCEEEEECTTTCC--------------EEEEEECSSSSEEEEEECTTSC-EEEEEC
T ss_pred cccCcEECCCCC-EEEEECC----CCEEEEEeCCCCc--------------EEEEeeCCCCCcceEEECCCCc-EEEEeC
Confidence 446889999998 4443321 2469999987643 2222211 11 11224778875 555543
Q ss_pred CC-CCCceEEEEeCCCCCCceEecc-CCCCCceeEEEEecCCEEEEEEecC----CeeEEEEEeCCCCceeeecccccce
Q 004766 322 KD-APKYKIIRVDLKEPNDWFEVIP-EAERDVLESATAVNLNQMIVSYLSD----VKYVLQIRDLKNGSLLHQLPIEIGS 395 (732)
Q Consensus 322 ~~-~~~~~l~~~d~~~~~~~~~l~~-~~~~~~l~~~~~~~~~~l~~~~~~~----g~~~l~~~d~~~g~~~~~l~~~~g~ 395 (732)
.+ .....|+++|.+++. ...++. ......+.++.+.+++.+++....+ ....|++++.++++. ..+......
T Consensus 106 ~~~~~~~~i~~~d~~~~~-~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~ 183 (333)
T 2dg1_A 106 GDFKSTGGIFAATENGDN-LQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTV-TPIIQNISV 183 (333)
T ss_dssp TTSSSCCEEEEECTTSCS-CEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCE-EEEEEEESS
T ss_pred CCCCCCceEEEEeCCCCE-EEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEE-EEeecCCCc
Confidence 22 112479999988776 343333 2223457778888767787766431 236899999875554 343322223
Q ss_pred eeEeecccCCcEEEEEEecCCCCceEEEEECCC
Q 004766 396 VNAISARREDSVVFISFTSFLIPGIVYQCNLKT 428 (732)
Q Consensus 396 v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~ 428 (732)
...+.++++++.++++-+. -..++++|+.+
T Consensus 184 ~~~i~~~~dg~~l~v~~~~---~~~i~~~d~~~ 213 (333)
T 2dg1_A 184 ANGIALSTDEKVLWVTETT---ANRLHRIALED 213 (333)
T ss_dssp EEEEEECTTSSEEEEEEGG---GTEEEEEEECT
T ss_pred ccceEECCCCCEEEEEeCC---CCeEEEEEecC
Confidence 4567788999877765432 35789999853
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=97.44 E-value=0.11 Score=51.48 Aligned_cols=231 Identities=10% Similarity=0.042 Sum_probs=123.8
Q ss_pred EEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecccc--cceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCc
Q 004766 134 LIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADAL--SWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTE 211 (732)
Q Consensus 134 ~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~--~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~ 211 (732)
+..+.++|||+.. ++ +..+ ..|+.+|.+ |+...... ......+++++|||+ |+++..
T Consensus 59 ~~~i~~~~~g~l~-v~-~~~~---~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~-------------- 117 (299)
T 2z2n_A 59 VMCLTISSDGEVW-FT-ENAA---NKIGRITKK-GIIKEYTLPNPDSAPYGITEGPNGD-IWFTEM-------------- 117 (299)
T ss_dssp EEEEEECTTSCEE-EE-ETTT---TEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSC-EEEEET--------------
T ss_pred eeeEEECCCCCEE-Ee-CCCC---CeEEEECCC-CcEEEEeCCCcCCCceeeEECCCCC-EEEEec--------------
Confidence 5678899999843 33 2222 268888876 44221111 112246788888885 555431
Q ss_pred ccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCC
Q 004766 212 TDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDG 291 (732)
Q Consensus 212 ~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 291 (732)
....|++++. ++.. ..+..+........+.++++|+.. +... . ...|+.++. ++.
T Consensus 118 ----~~~~i~~~d~-~g~~---~~~~~~~~~~~~~~i~~~~~g~l~-v~~~-~---~~~i~~~~~-~g~----------- 172 (299)
T 2z2n_A 118 ----NGNRIGRITD-DGKI---REYELPNKGSYPSFITLGSDNALW-FTEN-Q---NNAIGRITE-SGD----------- 172 (299)
T ss_dssp ----TTTEEEEECT-TCCE---EEEECSSTTCCEEEEEECTTSCEE-EEET-T---TTEEEEECT-TCC-----------
T ss_pred ----CCceEEEECC-CCCE---EEecCCCCCCCCceEEEcCCCCEE-EEeC-C---CCEEEEEcC-CCc-----------
Confidence 2346777776 3321 222222222344678899999643 3321 1 245888887 432
Q ss_pred CCCcEEe--eecccceE-EEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecCCEEEEEEe
Q 004766 292 LLPFVKL--IDGFDAQY-EVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYL 368 (732)
Q Consensus 292 ~~~~~~l--~~~~~~~~-~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~~l~~~~~ 368 (732)
.... ........ ..++++|. +|+.... ...|++++. ++. ...+........+.++.+.+++.+++...
T Consensus 173 ---~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~---~~~i~~~~~-~g~-~~~~~~~~~~~~~~~i~~~~~g~l~v~~~ 243 (299)
T 2z2n_A 173 ---ITEFKIPTPASGPVGITKGNDDA-LWFVEII---GNKIGRITT-SGE-ITEFKIPTPNARPHAITAGAGIDLWFTEW 243 (299)
T ss_dssp ---EEEEECSSTTCCEEEEEECTTSS-EEEEETT---TTEEEEECT-TCC-EEEEECSSTTCCEEEEEECSTTCEEEEET
T ss_pred ---EEEeeCCCCCCcceeEEECCCCC-EEEEccC---CceEEEECC-CCc-EEEEECCCCCCCceeEEECCCCCEEEecc
Confidence 1111 11111111 23566665 6665432 347999998 554 34332222234567788877667777654
Q ss_pred cCCeeEEEEEeCCCCceeeecccc--cceeeEeecccCCcEEEEEEecCCCCceEEEEECCCC
Q 004766 369 SDVKYVLQIRDLKNGSLLHQLPIE--IGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTE 429 (732)
Q Consensus 369 ~~g~~~l~~~d~~~g~~~~~l~~~--~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~ 429 (732)
.+ ..|++++.+ |+. ..+..+ ...+..+.. +++ .++++.+ ...++++++.++
T Consensus 244 ~~--~~i~~~d~~-g~~-~~~~~~~~~~~~~~i~~-~~g-~l~v~~~----~~~l~~~~~~~~ 296 (299)
T 2z2n_A 244 GA--NKIGRLTSN-NII-EEYPIQIKSAEPHGICF-DGE-TIWFAME----CDKIGKLTLIKD 296 (299)
T ss_dssp TT--TEEEEEETT-TEE-EEEECSSSSCCEEEEEE-CSS-CEEEEET----TTEEEEEEEC--
T ss_pred CC--ceEEEECCC-Cce-EEEeCCCCCCccceEEe-cCC-CEEEEec----CCcEEEEEcCcc
Confidence 43 478899984 654 444333 234555666 555 4666532 257888887655
|
| >1whs_A Serine carboxypeptidase II; HET: NAG FUC; 2.00A {Triticum aestivum} SCOP: c.69.1.5 PDB: 1bcs_A* 1bcr_A* 1wht_A* 3sc2_A* | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00076 Score=65.56 Aligned_cols=144 Identities=13% Similarity=0.055 Sum_probs=86.1
Q ss_pred EEEEEEccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCC-Cc---------C-------hhHHHHHHhcCcEE
Q 004766 452 HQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTP-SF---------S-------VSRTILMRHLGAVF 514 (732)
Q Consensus 452 ~~~~~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~-~~---------~-------~~~~~~l~~~G~~v 514 (732)
..+.+....| ..+..|++..+. .....|++|+++||||.+... .+ . ..-..| . +-..+
T Consensus 22 Gy~~v~~~~~-~~lFywf~es~~--~~~~~Pl~lwlnGGPGcSS~~~g~~~E~GP~~v~~~~~~l~~N~~sW-~-~~anv 96 (255)
T 1whs_A 22 GYITVDEGAG-RSLFYLLQEAPE--DAQPAPLVLWLNGGPGCSSVAYGASEELGAFRVKPRGAGLVLNEYRW-N-KVANV 96 (255)
T ss_dssp EEEEEETTTT-EEEEEEEECCCG--GGCSCCEEEEECCTTTBCTTTTHHHHTSSSEEECGGGCCEEECTTCG-G-GTSEE
T ss_pred EEEECCCCCC-cEEEEEEEEecC--CCCCCCEEEEECCCCchHHHHHHHHhccCCeEecCCCCeeeeCcccc-c-ccCCE
Confidence 3455554467 788888775543 235789999999999987544 21 0 000122 2 34678
Q ss_pred EEEcccCCCCCchhHHhccc-ccCCccHHHHHHHHHHHHHH-cCCCCCCcEEEEecChhHHHHHHHHhh----C--CCee
Q 004766 515 CIANIRGGGEYGEEWHKGGA-LAKKQNCFDDFISASEYLIS-AGYTQSRKLCIEGGSNGGLLVGACINQ----R--PDLF 586 (732)
Q Consensus 515 ~~~~~rG~g~~g~~~~~~~~-~~~~~~~~~D~~~~~~~l~~-~~~~d~~~i~i~G~S~GG~l~~~~~~~----~--p~~f 586 (732)
+.+|.+-|.||...-..... ........+|+...++...+ ......+++.|.|.|+||..+..++.. . .=.+
T Consensus 97 lfiDqPvGtGfSy~~~~~~~~~~~~~~~a~~~~~fl~~f~~~fp~~~~~~~yi~GESYgG~yvp~la~~i~~~n~~~inL 176 (255)
T 1whs_A 97 LFLDSPAGVGFSYTNTSSDIYTSGDNRTAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQLVHRSKNPVINL 176 (255)
T ss_dssp EEECCSTTSTTCEESSGGGGGSCCHHHHHHHHHHHHHHHHHHCGGGTTCEEEEEEEETHHHHHHHHHHHHHHHTCSSCEE
T ss_pred EEEecCCCCccCCCcCccccccCCHHHHHHHHHHHHHHHHHhCHHhcCCCEEEEecCCccccHHHHHHHHHHcCCccccc
Confidence 88896544444322111111 11222345666666554333 333345689999999999988776652 1 2357
Q ss_pred eEEEEcCCcccccc
Q 004766 587 GCALAHVGVMDMLR 600 (732)
Q Consensus 587 ~a~v~~~p~~d~~~ 600 (732)
+++++..|++|...
T Consensus 177 kGi~ign~~~d~~~ 190 (255)
T 1whs_A 177 KGFMVGNGLIDDYH 190 (255)
T ss_dssp EEEEEEEECCBHHH
T ss_pred ceEEecCCccCHHH
Confidence 89999999888754
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.39 E-value=0.12 Score=59.46 Aligned_cols=204 Identities=7% Similarity=0.025 Sum_probs=119.6
Q ss_pred EEeEEECCCCcEEEEEEeccCCceEEEEEEECCCC----ce---ecccccceeeeeEEEEeCCcEEEEEEecCCCCCCCC
Q 004766 134 LIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQ----IV---EADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDM 206 (732)
Q Consensus 134 ~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g----~~---~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~ 206 (732)
..++.+++.+.+|.++ +... ..|+.+++.+. .. +...+. ...+++..+.++.||++-
T Consensus 426 ~~gl~~d~~~~~lY~s-D~~~---~~I~~~~l~g~~~~~~~~~vi~~~l~--~P~GLAvD~~~~~LY~tD---------- 489 (791)
T 3m0c_C 426 VVALDTEVASNRIYWS-DLSQ---RMICSTQLDRAHGVSSYDTVISRDIQ--APDGLAVDWIHSNIYWTD---------- 489 (791)
T ss_dssp EEEEEEETTTTEEEEE-ETTT---TEEEEEEC--------CEEEECSSCS--CCCEEEEETTTTEEEEEE----------
T ss_pred eEEEeecccCCeeEEe-eccc---eeEEEEeccCCCCCcceeEEEecCCC--CcceeeeeecCCcEEEEe----------
Confidence 3477888877776555 4332 26888888753 11 111111 236788888888888873
Q ss_pred CCCCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccc
Q 004766 207 DAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGF 286 (732)
Q Consensus 207 ~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~ 286 (732)
....+|++.++.+.. ...+..... ....++++.|.+.+|+++.... ...|+++++++..
T Consensus 490 --------~~~~~I~v~~ldG~~--~~~l~~~~l--~~P~gIaVDp~~g~LYwtD~g~---~~~I~~~~~dG~~------ 548 (791)
T 3m0c_C 490 --------SVLGTVSVADTKGVK--RKTLFRENG--SKPRAIVVDPVHGFMYWTDWGT---PAKIKKGGLNGVD------ 548 (791)
T ss_dssp --------TTTTEEEEEETTSSS--EEEEEECTT--CCEEEEEEETTTTEEEEEECSS---SCEEEEEETTSCC------
T ss_pred --------cCCCeEEEEeCCCCe--EEEEEeCCC--CCcceEEEecCCCCEEEecCCC---CCeEEEEecCCCc------
Confidence 233478888887543 223333221 1235789999999988765322 2579999988632
Q ss_pred cccCCCCCcEEeee-cccc-eEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCC-CCceeEEEEecCCEE
Q 004766 287 KKRDGLLPFVKLID-GFDA-QYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAE-RDVLESATAVNLNQM 363 (732)
Q Consensus 287 ~~~~~~~~~~~l~~-~~~~-~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~-~~~l~~~~~~~~~~l 363 (732)
.+.+.. +... .-..+++.+++||+. + ....+|.++++++.. .+.++.... -..-.++.++. ++|
T Consensus 549 --------~~~lv~~~l~~P~GLavD~~~~~LYwa-D--~~~~~I~~~d~dG~~-~~~v~~~~~~l~~P~glav~~-~~l 615 (791)
T 3m0c_C 549 --------IYSLVTENIQWPNGITLDLLSGRLYWV-D--SKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVFE-DKV 615 (791)
T ss_dssp --------EEEEECSSCSCEEEEEEETTTTEEEEE-E--TTTTEEEEEETTSCS-CEEEEECTTTTSSEEEEEEET-TEE
T ss_pred --------eEEEEeCCCCCceEEEEecCCCeEEEE-e--CCCCcEEEEecCCCc-eEEEecCCCccCCCCEEEEeC-CEE
Confidence 223332 1111 112466778888875 3 234589999998765 445544321 12233566666 788
Q ss_pred EEEEecCCeeEEEEEeCCCCceeeec
Q 004766 364 IVSYLSDVKYVLQIRDLKNGSLLHQL 389 (732)
Q Consensus 364 ~~~~~~~g~~~l~~~d~~~g~~~~~l 389 (732)
|++.... ..|++++..+|+.+..|
T Consensus 616 YwtD~~~--~~I~~~dk~tG~~~~~l 639 (791)
T 3m0c_C 616 FWTDIIN--EAIFSANRLTGSDVNLL 639 (791)
T ss_dssp EEEETTT--TEEEEEETTTCCCCEEE
T ss_pred EEEECCC--CEEEEEeCCCCcceEEe
Confidence 8876554 57888987778654444
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.29 E-value=0.06 Score=57.43 Aligned_cols=158 Identities=12% Similarity=0.045 Sum_probs=87.3
Q ss_pred EeEEECC-CCcEEEEEEeccCCceEEEEEEECCCCceecccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCccc
Q 004766 135 IKVSVSE-DAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETD 213 (732)
Q Consensus 135 ~~~~~SP-DG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~ 213 (732)
..++++| ++.. +|+.+.. ..|+++|++++.............+++|++||+.||++.....
T Consensus 140 ~~lavdp~~~g~-Lyv~d~~----~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~------------- 201 (430)
T 3tc9_A 140 VWLSFDPKNHNH-LYLVGEQ----HPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNN------------- 201 (430)
T ss_dssp CEEEEETTEEEE-EEEEEBT----EEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSC-------------
T ss_pred CEEEECCCCCCe-EEEEeCC----CcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCC-------------
Confidence 4778998 4555 4555543 5899999998774332222223478999999998887743220
Q ss_pred CCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCCC
Q 004766 214 SNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLL 293 (732)
Q Consensus 214 ~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~ 293 (732)
.....++.............+. ....+ .+++++|++.+|++.... ..+|+.++.+++.
T Consensus 202 -~~~~~v~~~~~~g~~~~~~~l~-~~~~p---~giavdp~~g~lyv~d~~----~~~V~~~~~~~~~------------- 259 (430)
T 3tc9_A 202 -NDRPNNYILTRESGFKVITELT-KGQNC---NGAETHPINGELYFNSWN----AGQVFRYDFTTQE------------- 259 (430)
T ss_dssp -TTSEEEEEEEGGGTSCSEEEEE-ECSSC---CCEEECTTTCCEEEEETT----TTEEEEEETTTTE-------------
T ss_pred -cccceEEEEeCCCceeeeeeec-cCCCc---eEEEEeCCCCEEEEEECC----CCEEEEEECCCCc-------------
Confidence 1112344444332221111222 11222 367889965566555432 3469999987632
Q ss_pred CcEEeee--c-ccceEEEEEecCCeEEEEeCCCCCCceEEEEeCCC
Q 004766 294 PFVKLID--G-FDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKE 336 (732)
Q Consensus 294 ~~~~l~~--~-~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~ 336 (732)
...+.. . .......++|+|+.||+.... +.+|++++.++
T Consensus 260 -~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~---~~~I~~~~~d~ 301 (430)
T 3tc9_A 260 -TTPLFTIQDSGWEFHIQFHPSGNYAYIVVVN---QHYILRSDYDW 301 (430)
T ss_dssp -EEEEEECSSSSCCEEEEECTTSSEEEEEETT---TTEEEEEEEET
T ss_pred -EEEEEEcCCCCcceeEEEcCCCCEEEEEECC---CCEEEEEeCCc
Confidence 111211 1 112234589999888875432 45788877654
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=97.28 E-value=0.078 Score=54.14 Aligned_cols=201 Identities=8% Similarity=0.005 Sum_probs=106.2
Q ss_pred EEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCc-ee-ccc---------ccceeeeeEEEEeCCcEEEEEEecCCCC
Q 004766 134 LIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQI-VE-ADA---------LSWFKFSSIAWTHDSKGFFYSRYPAPKE 202 (732)
Q Consensus 134 ~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~-~~-~~~---------~~~~~~~~~~WspDg~~l~y~~~~~~~~ 202 (732)
..+++++|||+ .|+.+... ..|+++|.++.. .+ ... ..-....+++++|++..||++..
T Consensus 93 p~gia~d~~g~--l~v~d~~~---~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~----- 162 (329)
T 3fvz_A 93 PHGLSIDTDGN--YWVTDVAL---HQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDG----- 162 (329)
T ss_dssp EEEEEECTTSC--EEEEETTT---TEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEEC-----
T ss_pred ceEEEECCCCC--EEEEECCC---CEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeC-----
Confidence 56789999999 34444332 379999987652 11 110 00002367999994445666531
Q ss_pred CCCCCCCCcccCCcccEEEEEECCCCCCCCeEEEecC-C-------CCeeEEEeEEecCCcEEEEEEecCCcceEEEEEE
Q 004766 203 GKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDP-E-------HPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYC 274 (732)
Q Consensus 203 ~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~-~-------~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~ 274 (732)
....+|++++.... -+..+... . .-....+++++||+..|++.... ...|.++
T Consensus 163 ------------~~~~~I~~~~~~g~---~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~----~~~I~~~ 223 (329)
T 3fvz_A 163 ------------YCNSRIVQFSPSGK---FVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRE----NGRIQCF 223 (329)
T ss_dssp ------------SSCCEEEEECTTSC---EEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETT----TTEEEEE
T ss_pred ------------CCCCeEEEEcCCCC---EEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECC----CCEEEEE
Confidence 12346777773221 11222111 0 00124578999997776655422 3568888
Q ss_pred eCCCCCCCcccccccCCCCCcEEeeec-cc-ceE-EEEEecCCeEEEEeCC----CCCCceEEEEeCCCCCCceEeccC-
Q 004766 275 DLSALPEGLEGFKKRDGLLPFVKLIDG-FD-AQY-EVIANDDTVFTFLTNK----DAPKYKIIRVDLKEPNDWFEVIPE- 346 (732)
Q Consensus 275 d~~~~~~~~~~~~~~~~~~~~~~l~~~-~~-~~~-~~~s~dg~~l~~~s~~----~~~~~~l~~~d~~~~~~~~~l~~~- 346 (732)
+.+++.. ...+... .. ..+ ..++| ..++..... +....+++.+++.+++ ....+..
T Consensus 224 ~~~~G~~-------------~~~~~~~~~~~~~~~~~~~p--g~~~~~~g~~~v~~~~~~~v~~~~~~~g~-~~~~~~~~ 287 (329)
T 3fvz_A 224 KTDTKEF-------------VREIKHASFGRNVFAISYIP--GFLFAVNGKPYFGDQEPVQGFVMNFSSGE-IIDVFKPV 287 (329)
T ss_dssp ETTTCCE-------------EEEECCTTTTTCEEEEEEET--TEEEEEECCCCTTCSCCCCEEEEETTTCC-EEEEECCS
T ss_pred ECCCCcE-------------EEEEeccccCCCcceeeecC--CEEEEeCCCEEeccCCCcEEEEEEcCCCe-EEEEEcCC
Confidence 9874320 1112111 11 111 12455 223322211 1224578899988776 3333321
Q ss_pred -CCCCceeEEEEecCCEEEEEEecCCeeEEEEEeCC
Q 004766 347 -AERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLK 381 (732)
Q Consensus 347 -~~~~~l~~~~~~~~~~l~~~~~~~g~~~l~~~d~~ 381 (732)
.......++.+++++.+|++...+ .+|++|+++
T Consensus 288 ~~~~~~p~~ia~~~dG~lyvad~~~--~~I~~~~~~ 321 (329)
T 3fvz_A 288 RKHFDMPHDIVASEDGTVYIGDAHT--NTVWKFTLT 321 (329)
T ss_dssp SSCCSSEEEEEECTTSEEEEEESSS--CCEEEEEEE
T ss_pred CCccCCeeEEEECCCCCEEEEECCC--CEEEEEeCC
Confidence 112346778888877788776655 478888875
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=97.28 E-value=0.0064 Score=65.22 Aligned_cols=169 Identities=9% Similarity=-0.008 Sum_probs=94.6
Q ss_pred EEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCCCCcEEee--ecccceE--EEEEec-CCeEEEE
Q 004766 245 IFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLI--DGFDAQY--EVIAND-DTVFTFL 319 (732)
Q Consensus 245 ~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~--~~~s~d-g~~l~~~ 319 (732)
+..++|||||++|++....+ .....+.++|+.++..+.. ....++..+. .+....+ ..|+|+ +..|+..
T Consensus 95 v~~l~~spdg~~lav~~~sg-s~d~~v~iwd~~~~~~~~~-----~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~ 168 (434)
T 2oit_A 95 IHHLALSCDNLTLSACMMSS-EYGSIIAFFDVRTFSNEAK-----QQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVC 168 (434)
T ss_dssp EEEEEECTTSCEEEEEEEET-TTEEEEEEEEHHHHHCTTC-----SSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEE
T ss_pred ccEEEEcCCCCEEEEEEecc-CCCceEEEEEccccccCCc-----CCcceeeeeeccCCCCCceEEEEECCCCCCEEEEE
Confidence 56889999999998643111 1246688888765210000 0001111111 1111222 258897 4444433
Q ss_pred eCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecCCEEEEEEecCCeeEEEEEeCCCCceeeeccccc------
Q 004766 320 TNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEI------ 393 (732)
Q Consensus 320 s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~~l~~~~~~~g~~~l~~~d~~~g~~~~~l~~~~------ 393 (732)
+. +..|..+|+.++........+. ..+..+.|++++..++....++ .|++||.. ++....+..+.
T Consensus 169 s~----Dg~v~iwD~~~~~~~~~~~~~~--~~v~~v~wspdg~~lasgs~dg--~v~iwd~~-~~~~~~~~~~~~~~~~~ 239 (434)
T 2oit_A 169 LA----DGSIAVLQVTETVKVCATLPST--VAVTSVCWSPKGKQLAVGKQNG--TVVQYLPT-LQEKKVIPCPPFYESDH 239 (434)
T ss_dssp ET----TSCEEEEEESSSEEEEEEECGG--GCEEEEEECTTSSCEEEEETTS--CEEEECTT-CCEEEEECCCTTCCTTS
T ss_pred EC----CCeEEEEEcCCCcceeeccCCC--CceeEEEEcCCCCEEEEEcCCC--cEEEEccC-CcccccccCCcccCCCC
Confidence 33 2358888887764222222332 5688899998766666777774 68899987 66544554331
Q ss_pred -ceeeEeecccCCcEEEEEEecC----CCCceEEEEECCCC
Q 004766 394 -GSVNAISARREDSVVFISFTSF----LIPGIVYQCNLKTE 429 (732)
Q Consensus 394 -g~v~~~~~s~d~~~l~~~~ss~----~~p~~~y~~d~~~~ 429 (732)
..+..+.+++++. +++.+++. ..++.++.+++...
T Consensus 240 ~~~v~~v~w~~~~~-~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 240 PVRVLDVLWIGTYV-FAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp CEEEEEEEEEETTE-EEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred ceeEEEEEEecCce-EEEEEccCCCccCCCCceEEEEeccC
Confidence 2566777777654 44444433 34566888887654
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=97.28 E-value=0.26 Score=55.21 Aligned_cols=202 Identities=8% Similarity=-0.067 Sum_probs=123.2
Q ss_pred EEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecccccc-eeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcc
Q 004766 134 LIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSW-FKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTET 212 (732)
Q Consensus 134 ~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~~~-~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~ 212 (732)
..++.|++++.+|.++ +... ..|+.++++++........+ ....+++..+.++.||++-.
T Consensus 39 ~~~l~~d~~~~~lywt-D~~~---~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~--------------- 99 (628)
T 4a0p_A 39 ASALDFDVTDNRIYWT-DISL---KTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADT--------------- 99 (628)
T ss_dssp EEEEEEETTTTEEEEE-ETTT---TEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEET---------------
T ss_pred eEEEEEECCCCEEEEE-ECCC---CeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEEC---------------
Confidence 4578899988877665 4332 37888998876432111111 12357888778888888631
Q ss_pred cCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCC
Q 004766 213 DSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGL 292 (732)
Q Consensus 213 ~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~ 292 (732)
...+|.+.++.+.. ...+....- ..-.++++.|...+|+++.. +. ...|+.+++++..
T Consensus 100 ---~~~~I~v~~~dG~~--~~~l~~~~l--~~P~~iavdp~~G~lY~tD~-g~--~~~I~r~~~dG~~------------ 157 (628)
T 4a0p_A 100 ---GTNRIEVSKLDGQH--RQVLVWKDL--DSPRALALDPAEGFMYWTEW-GG--KPKIDRAAMDGSE------------ 157 (628)
T ss_dssp ---TTTEEEEEETTSTT--CEEEECSSC--CCEEEEEEETTTTEEEEEEC-SS--SCEEEEEETTSCS------------
T ss_pred ---CCCEEEEEecCCCc--EEEEEeCCC--CCcccEEEccCCCeEEEeCC-CC--CCEEEEEeCCCCc------------
Confidence 23578888886543 223332211 12357899998888877653 22 4679999988732
Q ss_pred CCcEEeeecccceE-EEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecCCEEEEEEecCC
Q 004766 293 LPFVKLIDGFDAQY-EVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDV 371 (732)
Q Consensus 293 ~~~~~l~~~~~~~~-~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~~l~~~~~~~g 371 (732)
.+.+..+..... ..+++++++||+.-. ...+|.++++++.. .+ ++.... ....+++++. +++|++...+
T Consensus 158 --~~~l~~~~~~P~GlalD~~~~~LY~aD~---~~~~I~~~d~dG~~-~~-v~~~~l-~~P~glav~~-~~ly~tD~~~- 227 (628)
T 4a0p_A 158 --RTTLVPNVGRANGLTIDYAKRRLYWTDL---DTNLIESSNMLGLN-RE-VIADDL-PHPFGLTQYQ-DYIYWTDWSR- 227 (628)
T ss_dssp --CEEEECSCSSEEEEEEETTTTEEEEEET---TTTEEEEEETTSCS-CE-EEEECC-SCEEEEEEET-TEEEEEETTT-
T ss_pred --eEEEECCCCCcceEEEccccCEEEEEEC---CCCEEEEEcCCCCc-eE-EeeccC-CCceEEEEEC-CEEEEecCCC-
Confidence 333443322111 247777888887543 24579999998765 33 443322 2344677776 7888886544
Q ss_pred eeEEEEEeCCCCceee
Q 004766 372 KYVLQIRDLKNGSLLH 387 (732)
Q Consensus 372 ~~~l~~~d~~~g~~~~ 387 (732)
..|+++|..+|+..+
T Consensus 228 -~~I~~~dk~tg~~~~ 242 (628)
T 4a0p_A 228 -RSIERANKTSGQNRT 242 (628)
T ss_dssp -TEEEEEETTTCCSCE
T ss_pred -CEEEEEECCCCCceE
Confidence 578899977776433
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=97.23 E-value=0.072 Score=52.85 Aligned_cols=195 Identities=7% Similarity=0.009 Sum_probs=103.3
Q ss_pred EEeEEE-CCCCcEEEEEEeccCCceEEEEEEECCCCceeccc-c-cceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCC
Q 004766 134 LIKVSV-SEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADA-L-SWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGT 210 (732)
Q Consensus 134 ~~~~~~-SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~-~-~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~ 210 (732)
...+.+ +++|+.+ ++ +..+. ..|+++|. +|+.+... . ......+++++|||+ |+++..
T Consensus 79 p~~i~~~~~~g~l~-v~-~~~~~--~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~------------- 139 (286)
T 1q7f_A 79 PNRVAVVRNSGDII-VT-ERSPT--HQIQIYNQ-YGQFVRKFGATILQHPRGVTVDNKGR-IIVVEC------------- 139 (286)
T ss_dssp EEEEEEETTTTEEE-EE-ECGGG--CEEEEECT-TSCEEEEECTTTCSCEEEEEECTTSC-EEEEET-------------
T ss_pred ceEEEEEcCCCeEE-EE-cCCCC--CEEEEECC-CCcEEEEecCccCCCceEEEEeCCCC-EEEEEC-------------
Confidence 557778 5777633 33 22212 47899994 55543211 1 111236789999996 555421
Q ss_pred cccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccC
Q 004766 211 ETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRD 290 (732)
Q Consensus 211 ~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~ 290 (732)
....|++++.... .+..+..........+++++|||+ |++.. .. ...|++++..+..
T Consensus 140 -----~~~~i~~~~~~g~---~~~~~~~~~~~~~p~~i~~~~~g~-l~v~~-~~---~~~i~~~~~~g~~---------- 196 (286)
T 1q7f_A 140 -----KVMRVIIFDQNGN---VLHKFGCSKHLEFPNGVVVNDKQE-IFISD-NR---AHCVKVFNYEGQY---------- 196 (286)
T ss_dssp -----TTTEEEEECTTSC---EEEEEECTTTCSSEEEEEECSSSE-EEEEE-GG---GTEEEEEETTCCE----------
T ss_pred -----CCCEEEEEcCCCC---EEEEeCCCCccCCcEEEEECCCCC-EEEEE-CC---CCEEEEEcCCCCE----------
Confidence 2346788775321 122232212222356889999998 43332 21 3468888875421
Q ss_pred CCCCcEEeeec--cc-ceEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecCCEEEEEE
Q 004766 291 GLLPFVKLIDG--FD-AQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSY 367 (732)
Q Consensus 291 ~~~~~~~l~~~--~~-~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~~l~~~~ 367 (732)
...+... .. ..-..++++| .+|+....+ +.+|.+++.++.. ...+..+.......++.+.+++.++++.
T Consensus 197 ----~~~~~~~g~~~~p~~i~~d~~G-~l~v~~~~~--~~~i~~~~~~g~~-~~~~~~~~~~~~~~~i~~~~~g~l~vs~ 268 (286)
T 1q7f_A 197 ----LRQIGGEGITNYPIGVGINSNG-EILIADNHN--NFNLTIFTQDGQL-ISALESKVKHAQCFDVALMDDGSVVLAS 268 (286)
T ss_dssp ----EEEESCTTTSCSEEEEEECTTC-CEEEEECSS--SCEEEEECTTSCE-EEEEEESSCCSCEEEEEEETTTEEEEEE
T ss_pred ----EEEEccCCccCCCcEEEECCCC-CEEEEeCCC--CEEEEEECCCCCE-EEEEcccCCCCcceeEEECCCCcEEEEC
Confidence 1122111 11 1112467777 466544321 2378888865432 3333333322335678888877888874
Q ss_pred ecCCeeEEEEEeCC
Q 004766 368 LSDVKYVLQIRDLK 381 (732)
Q Consensus 368 ~~~g~~~l~~~d~~ 381 (732)
.+ ..|.+|+..
T Consensus 269 -~~--~~v~v~~~~ 279 (286)
T 1q7f_A 269 -KD--YRLYIYRYV 279 (286)
T ss_dssp -TT--TEEEEEECS
T ss_pred -CC--CeEEEEEcc
Confidence 44 478888765
|
| >1ivy_A Human protective protein; carboxypeptidase, serine carboxypeptidase, protective protei glycoprotein, zymogen; HET: NAG NDG; 2.20A {Homo sapiens} SCOP: c.69.1.5 | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00071 Score=72.33 Aligned_cols=136 Identities=13% Similarity=0.101 Sum_probs=78.5
Q ss_pred EEccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChh----------------HHHHHHhcCcEEEEEcc
Q 004766 456 VPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVS----------------RTILMRHLGAVFCIANI 519 (732)
Q Consensus 456 ~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~----------------~~~~l~~~G~~v~~~~~ 519 (732)
++-.++ ..+..+++.... .....|++|++|||||.+....+..+ -.. +. +-..++.+|.
T Consensus 26 v~v~~~-~~lfy~f~~s~~--~~~~~Pl~lwlnGGPG~Ss~~g~~~e~GP~~~~~~~~~l~~n~~s-w~-~~~~~lfiDq 100 (452)
T 1ivy_A 26 LKSSGS-KHLHYWFVESQK--DPENSPVVLWLNGGPGCSSLDGLLTEHGPFLVQPDGVTLEYNPYS-WN-LIANVLYLES 100 (452)
T ss_dssp EECSTT-EEEEEEEECCSS--CGGGSCEEEEECCTTTBCTHHHHHTTTSSEEECTTSSCEEECTTC-GG-GSSEEEEECC
T ss_pred EeeCCC-CeEEEEEEEcCC--CCCCCCEEEEECCCCcHHHHHHHHHhcCCcEEeCCCceeeeCCCc-cc-ccccEEEEec
Confidence 344457 788888665433 12468999999999997643111000 011 12 4567888996
Q ss_pred -cCCCCCchhHHhcccccCCccHHHHHHHH-HHHHHHcCCCCCCcEEEEecChhHHHHHHHHh----hCCCeeeEEEEcC
Q 004766 520 -RGGGEYGEEWHKGGALAKKQNCFDDFISA-SEYLISAGYTQSRKLCIEGGSNGGLLVGACIN----QRPDLFGCALAHV 593 (732)
Q Consensus 520 -rG~g~~g~~~~~~~~~~~~~~~~~D~~~~-~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~----~~p~~f~a~v~~~ 593 (732)
+|.| |...- ............+|+... .+|+....-...+++.|.|.|+||..+..++. ..+-.++++++..
T Consensus 101 P~GtG-fS~~~-~~~~~~~~~~~a~~~~~~l~~f~~~~p~~~~~~~~i~GeSYgG~y~p~la~~i~~~~~~~l~g~~ign 178 (452)
T 1ivy_A 101 PAGVG-FSYSD-DKFYATNDTEVAQSNFEALQDFFRLFPEYKNNKLFLTGESYAGIYIPTLAVLVMQDPSMNLQGLAVGN 178 (452)
T ss_dssp STTST-TCEES-SCCCCCBHHHHHHHHHHHHHHHHHHSGGGTTSCEEEEEETTHHHHHHHHHHHHTTCTTSCEEEEEEES
T ss_pred CCCCC-cCCcC-CCCCcCCcHHHHHHHHHHHHHHHHhcHHhcCCCEEEEeeccceeehHHHHHHHHhcCccccceEEecC
Confidence 5654 33210 000000111234444444 44554432234578999999999995555444 3356789999999
Q ss_pred Ccccc
Q 004766 594 GVMDM 598 (732)
Q Consensus 594 p~~d~ 598 (732)
|++|.
T Consensus 179 ~~~d~ 183 (452)
T 1ivy_A 179 GLSSY 183 (452)
T ss_dssp CCSBH
T ss_pred CccCh
Confidence 98874
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=97.19 E-value=0.22 Score=49.38 Aligned_cols=230 Identities=11% Similarity=0.018 Sum_probs=123.7
Q ss_pred EEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecccc--cceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCC
Q 004766 133 ALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADAL--SWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGT 210 (732)
Q Consensus 133 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~--~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~ 210 (732)
....+.++++|+.. ++ +..+ ..|+++|.. |+...... ......++++.++|+ |+++..
T Consensus 63 ~~~~i~~~~~g~l~-v~-~~~~---~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~------------- 122 (300)
T 2qc5_A 63 KVMCLIVSSLGDIW-FT-ENGA---NKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGD-IWFTQL------------- 122 (300)
T ss_dssp CEEEEEECTTSCEE-EE-ETTT---TEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTC-EEEEET-------------
T ss_pred cceeEEECCCCCEE-EE-ecCC---CeEEEECCC-CCeEEecCCCCCCCCccceECCCCC-EEEEcc-------------
Confidence 35678899999733 33 3222 268889987 65432111 112346788888886 555431
Q ss_pred cccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccC
Q 004766 211 ETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRD 290 (732)
Q Consensus 211 ~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~ 290 (732)
....|++++.. +. ...+..+........+.++++|+ |++... . ...|+.++..+ .
T Consensus 123 -----~~~~i~~~~~~-g~---~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~-~---~~~i~~~~~~g-~---------- 177 (300)
T 2qc5_A 123 -----NGDRIGKLTAD-GT---IYEYDLPNKGSYPAFITLGSDNA-LWFTEN-Q---NNSIGRITNTG-K---------- 177 (300)
T ss_dssp -----TTTEEEEECTT-SC---EEEEECSSTTCCEEEEEECTTSS-EEEEET-T---TTEEEEECTTC-C----------
T ss_pred -----CCCeEEEECCC-CC---EEEccCCCCCCCceeEEECCCCC-EEEEec-C---CCeEEEECCCC-c----------
Confidence 12357777654 22 12222222223456788999998 444332 1 24588888733 1
Q ss_pred CCCCcEEeee--cccceE-EEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecCCEEEEEE
Q 004766 291 GLLPFVKLID--GFDAQY-EVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSY 367 (732)
Q Consensus 291 ~~~~~~~l~~--~~~~~~-~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~~l~~~~ 367 (732)
...... ...... ..++++| .+|+.... ...|++++. ++. ...+..........++.+.+++.+++..
T Consensus 178 ----~~~~~~~~~~~~~~~i~~d~~g-~l~v~~~~---~~~i~~~~~-~g~-~~~~~~~~~~~~~~~i~~d~~g~l~v~~ 247 (300)
T 2qc5_A 178 ----LEEYPLPTNAAAPVGITSGNDG-ALWFVEIM---GNKIGRITT-TGE-ISEYDIPTPNARPHAITAGKNSEIWFTE 247 (300)
T ss_dssp ----EEEEECSSTTCCEEEEEECTTS-SEEEEETT---TTEEEEECT-TCC-EEEEECSSTTCCEEEEEECSTTCEEEEE
T ss_pred ----EEEeeCCCCCCCcceEEECCCC-CEEEEccC---CCEEEEEcC-CCc-EEEEECCCCCCCceEEEECCCCCEEEec
Confidence 111111 111111 2355665 57765543 346999987 333 3333212223446677777667787776
Q ss_pred ecCCeeEEEEEeCCCCceeeecccc--cceeeEeecccCCcEEEEEEecCCCCceEEEEECC
Q 004766 368 LSDVKYVLQIRDLKNGSLLHQLPIE--IGSVNAISARREDSVVFISFTSFLIPGIVYQCNLK 427 (732)
Q Consensus 368 ~~~g~~~l~~~d~~~g~~~~~l~~~--~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~ 427 (732)
..+ ..|.+++.+ |+. ..+..+ ...+..+..+++|. ++++ +. . .++++|+.
T Consensus 248 ~~~--~~i~~~~~~-g~~-~~~~~~~~~~~~~~i~~~~~g~-l~v~--~~-~--~i~~~~p~ 299 (300)
T 2qc5_A 248 WGA--NQIGRITND-NTI-QEYQLQTENAEPHGITFGKDGS-VWFA--LK-C--KIGKLNLN 299 (300)
T ss_dssp TTT--TEEEEECTT-SCE-EEEECCSTTCCCCCEEECTTSC-EEEE--CS-S--EEEEEEEC
T ss_pred cCC--CeEEEECCC-CcE-EEEECCccCCccceeEeCCCCC-EEEE--cc-C--ceEEeCCC
Confidence 443 478899984 654 344333 23445566677765 5554 22 2 78877753
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.12 E-value=0.14 Score=51.37 Aligned_cols=256 Identities=9% Similarity=-0.004 Sum_probs=123.5
Q ss_pred CCcEEEEEE-eccCCceEEEEEEECCCCceecc-cccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCCcccE
Q 004766 142 DAKYLAYAL-SYSGSDWATIKLMRIEDQIVEAD-ALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHE 219 (732)
Q Consensus 142 DG~~la~~~-~~~G~e~~~i~v~dl~~g~~~~~-~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (732)
+++.++|.- ...+....+++++|+.+++.... .....+....+..-+++.+++.-... ......
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~--------------~~~~~~ 79 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYDG--------------RSRLSS 79 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCS--------------SCBCCC
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEEECCEEEEEcCCCC--------------CccCce
Confidence 444444442 22223334789999988873221 11111112233344665444322111 123356
Q ss_pred EEEEECCCCCCC-CeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCCCCcEEe
Q 004766 220 FYYHFLGTKQSE-DILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKL 298 (732)
Q Consensus 220 v~~~~lgt~~~~-~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l 298 (732)
++++++.+.... -..+-..+. +...... ..-+++..++.........++++++|+.+.. |..+
T Consensus 80 ~~~~d~~~~~~~~W~~~~~~p~-~r~~~~~-~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~--------------W~~~ 143 (301)
T 2vpj_A 80 VECLDYTADEDGVWYSVAPMNV-RRGLAGA-TTLGDMIYVSGGFDGSRRHTSMERYDPNIDQ--------------WSML 143 (301)
T ss_dssp EEEEETTCCTTCCCEEECCCSS-CCBSCEE-EEETTEEEEECCBCSSCBCCEEEEEETTTTE--------------EEEE
T ss_pred EEEEECCCCCCCeeEECCCCCC-CccceeE-EEECCEEEEEcccCCCcccceEEEEcCCCCe--------------EEEC
Confidence 889998775410 112211111 1111112 2236655444433322235679999987632 4443
Q ss_pred eecccc--eEEEEEecCCeEEEEeCCCC--CCceEEEEeCCCCCCceEeccCCCCCceeEEEEecCCEEEEEEecCC---
Q 004766 299 IDGFDA--QYEVIANDDTVFTFLTNKDA--PKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDV--- 371 (732)
Q Consensus 299 ~~~~~~--~~~~~s~dg~~l~~~s~~~~--~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~~l~~~~~~~g--- 371 (732)
...... ....... ++.||++...+. ....++.+|+.+.. |+.+.+......-......+ +.|++....++
T Consensus 144 ~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~d~~~~~-W~~~~~~p~~r~~~~~~~~~-~~i~v~GG~~~~~~ 220 (301)
T 2vpj_A 144 GDMQTAREGAGLVVA-SGVIYCLGGYDGLNILNSVEKYDPHTGH-WTNVTPMATKRSGAGVALLN-DHIYVVGGFDGTAH 220 (301)
T ss_dssp EECSSCCBSCEEEEE-TTEEEEECCBCSSCBCCCEEEEETTTTE-EEEECCCSSCCBSCEEEEET-TEEEEECCBCSSSB
T ss_pred CCCCCCcccceEEEE-CCEEEEECCCCCCcccceEEEEeCCCCc-EEeCCCCCcccccceEEEEC-CEEEEEeCCCCCcc
Confidence 321111 1122222 567887765432 24579999998876 88774322122222333444 78888765443
Q ss_pred eeEEEEEeCCCCceeeecc-cc--cceeeEeecccCCcEEEEEEecCC---CCceEEEEECCCCCCceEEEE
Q 004766 372 KYVLQIRDLKNGSLLHQLP-IE--IGSVNAISARREDSVVFISFTSFL---IPGIVYQCNLKTETPEMKIFR 437 (732)
Q Consensus 372 ~~~l~~~d~~~g~~~~~l~-~~--~g~v~~~~~s~d~~~l~~~~ss~~---~p~~~y~~d~~~~~~~~~~l~ 437 (732)
...++++|+.+++. +.+. +| ......+. .+ +.+++. .+.. .-..++.||+.+.+ .+.+.
T Consensus 221 ~~~v~~yd~~~~~W-~~~~~~p~~r~~~~~~~--~~-~~i~v~-GG~~~~~~~~~v~~yd~~~~~--W~~~~ 285 (301)
T 2vpj_A 221 LSSVEAYNIRTDSW-TTVTSMTTPRCYVGATV--LR-GRLYAI-AGYDGNSLLSSIECYDPIIDS--WEVVT 285 (301)
T ss_dssp CCCEEEEETTTTEE-EEECCCSSCCBSCEEEE--ET-TEEEEE-CCBCSSSBEEEEEEEETTTTE--EEEEE
T ss_pred cceEEEEeCCCCcE-EECCCCCCcccceeEEE--EC-CEEEEE-cCcCCCcccccEEEEcCCCCe--EEEcC
Confidence 35799999986664 4443 22 11111122 23 345443 2222 12578999998773 55543
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=97.12 E-value=0.094 Score=53.92 Aligned_cols=207 Identities=8% Similarity=-0.032 Sum_probs=101.8
Q ss_pred CEEEEeEEECCCCcEEEEEEeccC--CceEEEEEEECCCCceec-ccc------cceeeeeEEEEeCCcEEEEEEecCCC
Q 004766 131 TAALIKVSVSEDAKYLAYALSYSG--SDWATIKLMRIEDQIVEA-DAL------SWFKFSSIAWTHDSKGFFYSRYPAPK 201 (732)
Q Consensus 131 ~~~~~~~~~SPDG~~la~~~~~~G--~e~~~i~v~dl~~g~~~~-~~~------~~~~~~~~~WspDg~~l~y~~~~~~~ 201 (732)
.....++.++|||+ +|+++.+. .....|+++|+++|+.+. ... ......+++++|++..+|++.. .
T Consensus 66 ~~~p~gv~~d~~g~--L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~-~-- 140 (343)
T 2qe8_A 66 FDTVLGIKSDGNGI--VWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDP-A-- 140 (343)
T ss_dssp CSCEEEEEECSSSE--EEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEEC-C--
T ss_pred eeEeeEEEEcCCCc--EEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcC-c--
Confidence 34577899999997 34444330 002479999999988432 111 1112367899987766665521 0
Q ss_pred CCCCCCCCCcccCCcccEEEEEECCCCCCCC-------------------eEEE-ecCCC-----CeeEEEeEEecCCcE
Q 004766 202 EGKDMDAGTETDSNLYHEFYYHFLGTKQSED-------------------ILCW-KDPEH-----PKYIFSGHVTEDGQY 256 (732)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~-------------------~~v~-~~~~~-----~~~~~~~~~SpDg~~ 256 (732)
......|+++++.++.... ..++ ...+. .....++++||||++
T Consensus 141 ------------~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ 208 (343)
T 2qe8_A 141 ------------PDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEW 208 (343)
T ss_dssp ------------SGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCE
T ss_pred ------------cCCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCE
Confidence 0023356666654432100 0000 00000 012357899999999
Q ss_pred EEEEEecCCcceEEEEEEeCCCCCCC-c--ccccccCCCCCcEEeeecccceEEEEEecCCeEEEEeCCCCCCceEEEEe
Q 004766 257 LVMCIEENCDPVNKVYYCDLSALPEG-L--EGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVD 333 (732)
Q Consensus 257 l~~~~~~~~~~~~~l~~~d~~~~~~~-~--~~~~~~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d 333 (732)
|++.... ...+|.++....... + ..+ ...+..+-......-..++++| .+|+... ...+|.++|
T Consensus 209 ly~~~~~----~~~l~~~~~~~~~~~~~~~~~~-----~~~~~~~g~~g~pdgia~d~~G-~l~va~~---~~~~V~~~d 275 (343)
T 2qe8_A 209 LYLSPMH----STSMYRIKSADLSNLQLTDAEL-----GSKIERYSEKPICDGISIDKDH-NIYVGDL---AHSAIGVIT 275 (343)
T ss_dssp EEEEESS----CSEEEEEEHHHHTCTTCCHHHH-----HTTCEEEEECCSCSCEEECTTC-CEEEEEG---GGTEEEEEE
T ss_pred EEEEeCC----CCeEEEEEHHHhcCCCCChhhh-----hcceEecccCCCCceEEECCCC-CEEEEcc---CCCeEEEEE
Confidence 9876532 246888875321000 0 000 0001111110111122467776 4555432 245799999
Q ss_pred CCCCCCceEeccCCCCCceeEEEEecCCEEEEEEe
Q 004766 334 LKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYL 368 (732)
Q Consensus 334 ~~~~~~~~~l~~~~~~~~l~~~~~~~~~~l~~~~~ 368 (732)
.++++ +..++.........++.+.+++.++++..
T Consensus 276 ~~~G~-~~~~~~~~~~~~p~~va~~~~g~l~v~~~ 309 (343)
T 2qe8_A 276 SADRA-YKLLVTDEKLSWTDSFNFGSDGYLYFDCN 309 (343)
T ss_dssp TTTTE-EEEEEECGGGSCEEEEEECTTSCEEEEEC
T ss_pred CCCCC-EEEEEECCceecCCeeEECCCCcEEEEeC
Confidence 84444 44444321123355666665555666554
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=97.10 E-value=0.038 Score=55.04 Aligned_cols=200 Identities=10% Similarity=-0.010 Sum_probs=101.8
Q ss_pred EeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceeccc-cc-ceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcc
Q 004766 135 IKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADA-LS-WFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTET 212 (732)
Q Consensus 135 ~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~-~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~ 212 (732)
..+.++|||+.|+ +. + ..|+++|. +|+.+-.. .. .....+..++|||+.|+.....
T Consensus 40 ~~~~~~pdG~ilv-s~----~--~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~-------------- 97 (276)
T 3no2_A 40 NSVAATKAGEILF-SY----S--KGAKMITR-DGRELWNIAAPAGCEMQTARILPDGNALVAWCGH-------------- 97 (276)
T ss_dssp CEEEECTTSCEEE-EC----B--SEEEEECT-TSCEEEEEECCTTCEEEEEEECTTSCEEEEEEST--------------
T ss_pred cCeEECCCCCEEE-eC----C--CCEEEECC-CCCEEEEEcCCCCccccccEECCCCCEEEEecCC--------------
Confidence 3677999999776 31 2 25889998 67644211 11 1234678899999877654320
Q ss_pred cCCcccEEEEEECCCCCCCCeEEEecC------CCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccc
Q 004766 213 DSNLYHEFYYHFLGTKQSEDILCWKDP------EHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGF 286 (732)
Q Consensus 213 ~~~~~~~v~~~~lgt~~~~~~~v~~~~------~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~ 286 (732)
..+|+.++.. +. ++++.. ........+..++||.+|+... . ...|+.+|.++ +
T Consensus 98 ----~~~v~~vd~~-Gk----~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~--~---~~~v~~~d~~G-~------ 156 (276)
T 3no2_A 98 ----PSTILEVNMK-GE----VLSKTEFETGIERPHAQFRQINKNKKGNYLVPLF--A---TSEVREIAPNG-Q------ 156 (276)
T ss_dssp ----TEEEEEECTT-SC----EEEEEEECCSCSSGGGSCSCCEECTTSCEEEEET--T---TTEEEEECTTS-C------
T ss_pred ----CCEEEEEeCC-CC----EEEEEeccCCCCcccccccCceECCCCCEEEEec--C---CCEEEEECCCC-C------
Confidence 1234444331 11 111100 0001112456789999875432 1 34688888873 2
Q ss_pred cccCCCCCcEEeeecccceEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCC-ceEeccCCCC---CceeEEEEecCCE
Q 004766 287 KKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPND-WFEVIPEAER---DVLESATAVNLNQ 362 (732)
Q Consensus 287 ~~~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~-~~~l~~~~~~---~~l~~~~~~~~~~ 362 (732)
..|+. ............++|+.++ .... +.+|+.+|.++++. |+.-....+. ..+.++...+++.
T Consensus 157 ------~~w~~-~~~~~~~~~~~~~~g~~~v-~~~~---~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~ 225 (276)
T 3no2_A 157 ------LLNSV-KLSGTPFSSAFLDNGDCLV-ACGD---AHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGG 225 (276)
T ss_dssp ------EEEEE-ECSSCCCEEEECTTSCEEE-ECBT---TSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSC
T ss_pred ------EEEEE-ECCCCccceeEcCCCCEEE-EeCC---CCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCC
Confidence 11221 1111111123456666444 3322 34799999987762 3321111111 2245566666677
Q ss_pred EEEEEecC--------CeeEEEEEeCCCCceeeec
Q 004766 363 MIVSYLSD--------VKYVLQIRDLKNGSLLHQL 389 (732)
Q Consensus 363 l~~~~~~~--------g~~~l~~~d~~~g~~~~~l 389 (732)
+++..... +..+++.++.+ |+.+-++
T Consensus 226 i~v~~~~g~~~~~~~~~~~~~~~~~~~-g~~~W~~ 259 (276)
T 3no2_A 226 LYICNWQGHDREAGKGKHPQLVEIDSE-GKVVWQL 259 (276)
T ss_dssp EEEEEECTTCTTGGGSCCCSEEEECTT-SBEEEEE
T ss_pred EEEEeccCccccccccCCceEEEECCC-CCEEEEe
Confidence 77766422 23466666664 6654333
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=96.97 E-value=0.071 Score=51.92 Aligned_cols=188 Identities=9% Similarity=-0.071 Sum_probs=104.6
Q ss_pred EeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccC
Q 004766 135 IKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDS 214 (732)
Q Consensus 135 ~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~ 214 (732)
.++.++ |++|..+....| +|+++|+++|+.+...... ...+-.-+++++.||...
T Consensus 58 qGL~~~--~~~Ly~stG~~g----~v~~iD~~Tgkv~~~~l~~-~~FgeGit~~g~~Ly~lt------------------ 112 (268)
T 3nok_A 58 QGLVFH--QGHFFESTGHQG----TLRQLSLESAQPVWMERLG-NIFAEGLASDGERLYQLT------------------ 112 (268)
T ss_dssp EEEEEE--TTEEEEEETTTT----EEEECCSSCSSCSEEEECT-TCCEEEEEECSSCEEEEE------------------
T ss_pred ceEEEE--CCEEEEEcCCCC----EEEEEECCCCcEEeEECCC-CcceeEEEEeCCEEEEEE------------------
Confidence 467776 456655532222 4999999999965433322 122333466888887763
Q ss_pred CcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCCCC
Q 004766 215 NLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLP 294 (732)
Q Consensus 215 ~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~ 294 (732)
++...++.++..+......+ ..+. . +..+++||+.|+.+. + .+.|+++|.++.+.
T Consensus 113 w~~~~v~V~D~~Tl~~~~ti--~~~~-e----GwGLt~Dg~~L~vSd--G---s~~l~~iDp~T~~v------------- 167 (268)
T 3nok_A 113 WTEGLLFTWSGMPPQRERTT--RYSG-E----GWGLCYWNGKLVRSD--G---GTMLTFHEPDGFAL------------- 167 (268)
T ss_dssp SSSCEEEEEETTTTEEEEEE--ECSS-C----CCCEEEETTEEEEEC--S---SSEEEEECTTTCCE-------------
T ss_pred ccCCEEEEEECCcCcEEEEE--eCCC-c----eeEEecCCCEEEEEC--C---CCEEEEEcCCCCeE-------------
Confidence 45568999998775432221 1111 1 234568999876542 3 35799999887420
Q ss_pred cEEeeeccc-------ceEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCce--E---ecc------CCCCCceeEEE
Q 004766 295 FVKLIDGFD-------AQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWF--E---VIP------EAERDVLESAT 356 (732)
Q Consensus 295 ~~~l~~~~~-------~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~--~---l~~------~~~~~~l~~~~ 356 (732)
...+..... .+.. |. +| +||.-.-. ...|.++|.++++... . |.+ ......+.+++
T Consensus 168 ~~~I~V~~~g~~v~~lNeLe-~~-dG-~lyanvw~---s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA 241 (268)
T 3nok_A 168 VGAVQVKLRGQPVELINELE-CA-NG-VIYANIWH---SSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIA 241 (268)
T ss_dssp EEEEECEETTEECCCEEEEE-EE-TT-EEEEEETT---CSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEE
T ss_pred EEEEEeCCCCcccccccccE-Ee-CC-EEEEEECC---CCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEE
Confidence 112211111 0111 33 55 67743322 2379999999886211 1 111 11235789999
Q ss_pred EecC-CEEEEEEecCCeeEEEEEeC
Q 004766 357 AVNL-NQMIVSYLSDVKYVLQIRDL 380 (732)
Q Consensus 357 ~~~~-~~l~~~~~~~g~~~l~~~d~ 380 (732)
+.++ ++||++...= ++||.+.+
T Consensus 242 ~dp~~~rlfVTGK~W--p~~~ev~~ 264 (268)
T 3nok_A 242 VEPGSGRIFMTGKLW--PRLFEVRL 264 (268)
T ss_dssp ECTTTCCEEEEETTC--SEEEEEEE
T ss_pred EcCCCCEEEEeCCCC--CceEEEEE
Confidence 9874 6677765432 55655443
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=96.92 E-value=0.78 Score=51.29 Aligned_cols=228 Identities=11% Similarity=0.089 Sum_probs=133.4
Q ss_pred cEEEEEEeccCCceEEEEEEECCCCceec-ccccc-eeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCCcccEEE
Q 004766 144 KYLAYALSYSGSDWATIKLMRIEDQIVEA-DALSW-FKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFY 221 (732)
Q Consensus 144 ~~la~~~~~~G~e~~~i~v~dl~~g~~~~-~~~~~-~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~~~~~v~ 221 (732)
.+|.|+. + ..|+.+|+++..... ....+ ....+++|.+++..||++.. ...+|+
T Consensus 7 ~~Ll~s~---~---~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~------------------~~~~I~ 62 (628)
T 4a0p_A 7 AFLLFSR---R---ADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDI------------------SLKTIS 62 (628)
T ss_dssp CEEEEEE---T---TEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEET------------------TTTEEE
T ss_pred cEEEEEe---C---CcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEEC------------------CCCeEE
Confidence 3677763 2 378999998765211 11111 12368999999888988742 234788
Q ss_pred EEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCCCCcEEee-e
Q 004766 222 YHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLI-D 300 (732)
Q Consensus 222 ~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l~-~ 300 (732)
+.++.+... ..+..... ....++++.+.++.|++.... ...|.++++++.. .+.+. .
T Consensus 63 r~~~~g~~~--~~v~~~g~--~~P~GlAvD~~~~~LY~tD~~----~~~I~v~~~dG~~--------------~~~l~~~ 120 (628)
T 4a0p_A 63 RAFMNGSAL--EHVVEFGL--DYPEGMAVDWLGKNLYWADTG----TNRIEVSKLDGQH--------------RQVLVWK 120 (628)
T ss_dssp EEETTSCSC--EEEECSSC--SCCCEEEEETTTTEEEEEETT----TTEEEEEETTSTT--------------CEEEECS
T ss_pred EEECCCCCc--EEEEeCCC--CCcceEEEEeCCCEEEEEECC----CCEEEEEecCCCc--------------EEEEEeC
Confidence 888865432 23433221 112367888888888776432 3578999987632 22333 2
Q ss_pred cccceE-EEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEec-CCEEEEEEecCCeeEEEEE
Q 004766 301 GFDAQY-EVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVN-LNQMIVSYLSDVKYVLQIR 378 (732)
Q Consensus 301 ~~~~~~-~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~-~~~l~~~~~~~g~~~l~~~ 378 (732)
...... ..+.|....||+ ++.+ ...+|+++++++.. .+.++.. -....++.+.. +++||++.... ..|+++
T Consensus 121 ~l~~P~~iavdp~~G~lY~-tD~g-~~~~I~r~~~dG~~-~~~l~~~--~~~P~GlalD~~~~~LY~aD~~~--~~I~~~ 193 (628)
T 4a0p_A 121 DLDSPRALALDPAEGFMYW-TEWG-GKPKIDRAAMDGSE-RTTLVPN--VGRANGLTIDYAKRRLYWTDLDT--NLIESS 193 (628)
T ss_dssp SCCCEEEEEEETTTTEEEE-EECS-SSCEEEEEETTSCS-CEEEECS--CSSEEEEEEETTTTEEEEEETTT--TEEEEE
T ss_pred CCCCcccEEEccCCCeEEE-eCCC-CCCEEEEEeCCCCc-eEEEECC--CCCcceEEEccccCEEEEEECCC--CEEEEE
Confidence 222111 246676667776 4432 25689999998765 4555543 24456788886 37788876544 589999
Q ss_pred eCCCCceeeecccccceeeEeecccCCcEEEEEEecCCCCceEEEEECCCCC
Q 004766 379 DLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 430 (732)
Q Consensus 379 d~~~g~~~~~l~~~~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~~ 430 (732)
+++ |...+.+........+++. +++.+|++- ..-..++++|..+++
T Consensus 194 d~d-G~~~~v~~~~l~~P~glav--~~~~ly~tD---~~~~~I~~~dk~tg~ 239 (628)
T 4a0p_A 194 NML-GLNREVIADDLPHPFGLTQ--YQDYIYWTD---WSRRSIERANKTSGQ 239 (628)
T ss_dssp ETT-SCSCEEEEECCSCEEEEEE--ETTEEEEEE---TTTTEEEEEETTTCC
T ss_pred cCC-CCceEEeeccCCCceEEEE--ECCEEEEec---CCCCEEEEEECCCCC
Confidence 997 5432333211112223443 345666542 234678999987765
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0037 Score=71.34 Aligned_cols=222 Identities=11% Similarity=0.015 Sum_probs=116.9
Q ss_pred EEEEEECCCCceecccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCCcccEEEEEECCCCC--CCCeEEE
Q 004766 159 TIKLMRIEDQIVEADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQ--SEDILCW 236 (732)
Q Consensus 159 ~i~v~dl~~g~~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~--~~~~~v~ 236 (732)
.|+++++++++............+++|.+++..||++. ....+|+++++.+.. .....+.
T Consensus 387 ~I~~id~~~~~~~~~~~~~~~p~gla~d~~~~~Ly~sD------------------~~~~~I~~~~~~g~~~~~~~~~~i 448 (699)
T 1n7d_A 387 EVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSD------------------LSQRMICSTQLDRAHGVSSYDTVI 448 (699)
T ss_dssp C-CEECTTSCCEECCSCCCTTCCCCEEETTTTEEEECC------------------TTTTSBEEEESCCCCC-CCCCCBC
T ss_pred ceEEEeCCCCcceeeeccCcceEEEccccccCeEEEEe------------------cCCCeEEEEecCCCCCCcceEEEE
Confidence 68888988876443221111236899999888888762 123457888876410 0111111
Q ss_pred ecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCCCCcEEeee-ccc-ceEEEEEecCC
Q 004766 237 KDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLID-GFD-AQYEVIANDDT 314 (732)
Q Consensus 237 ~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l~~-~~~-~~~~~~s~dg~ 314 (732)
... .....++++.+.++.|++... . ...|+++++++.. .+.+.. +.. ..-..+.|+++
T Consensus 449 ~~~--~~~P~glavD~~~g~LY~tD~--~--~~~I~v~d~dg~~--------------~~~l~~~~~~~P~giavDp~~g 508 (699)
T 1n7d_A 449 SRD--IQAPDGLAVDWIHSNIYWTDS--V--LGTVSVADTKGVK--------------RKTLFREQGSKPRAIVVDPVHG 508 (699)
T ss_dssp CSC--C--CCCEECCCSSSBCEECCT--T--TSCEEEEBSSSCC--------------EEEECCCSSCCCCCEECCSSSS
T ss_pred eCC--CCCcceEEEEeeCCcEEEEec--c--CCeEEEEecCCCc--------------eEEEEeCCCCCcceEEEccCCC
Confidence 110 001135677776777655421 1 3458888887631 222222 111 11124667777
Q ss_pred eEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecC-CEEEEEEecCCeeEEEEEeCCCCceeeeccc-c
Q 004766 315 VFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNL-NQMIVSYLSDVKYVLQIRDLKNGSLLHQLPI-E 392 (732)
Q Consensus 315 ~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~-~~l~~~~~~~g~~~l~~~d~~~g~~~~~l~~-~ 392 (732)
.||+ ++.+ ...+|+++++++.. .+.++... -..-.++++.++ ++||++.... .+|++++++ |...+.+.. .
T Consensus 509 ~ly~-td~~-~~~~I~~~~~dG~~-~~~l~~~~-l~~PnGlavd~~~~~LY~aD~~~--~~I~~~d~d-G~~~~~~~~~~ 581 (699)
T 1n7d_A 509 FMYW-TDWG-TPAKIKKGGLNGVD-IYSLVTEN-IQWPNGITLDLLSGRLYWVDSKL--HSISSIDVN-GGNRKTILEDE 581 (699)
T ss_dssp CCEE-CCCS-SSCCEEBCCSSSCC-CCEESCSS-CSSCCCEEECTTTCCEEEEETTT--TEEEEECSS-SSCCEEECCCS
T ss_pred cEEE-cccC-CCCeEEEEeCCCCC-eeEEEeCC-CCCccEEEEeccCCEEEEEecCC--CeEEEEccC-CCceEEEEecC
Confidence 7775 4432 23579999887654 34444332 233457888853 6788776443 689999997 543233321 1
Q ss_pred --cceeeEeecccCCcEEEEEEecCCCCceEEEEECCCCC
Q 004766 393 --IGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 430 (732)
Q Consensus 393 --~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~~ 430 (732)
.....++++ +++.+|++- ..-.+|++++..+++
T Consensus 582 ~~~~~P~glav--d~~~lywtd---~~~~~V~~~d~~~G~ 616 (699)
T 1n7d_A 582 KRLAHPFSLAV--FEDKVFWTD---IINEAIFSANRLTGS 616 (699)
T ss_dssp SSCSSCCCCEE--ETTEEEEEC---STTTCEEEEETTTEE
T ss_pred CcCCCceEeEE--ECCEEEEEe---CCCCeEEEEEccCCC
Confidence 111112232 445555443 233678888876663
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=96.89 E-value=0.18 Score=53.68 Aligned_cols=157 Identities=10% Similarity=0.004 Sum_probs=84.0
Q ss_pred EeEEECCC--CcEEEEEEeccCCceEEEEEEECCCCceecccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcc
Q 004766 135 IKVSVSED--AKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTET 212 (732)
Q Consensus 135 ~~~~~SPD--G~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~ 212 (732)
.++.|+|+ +.. +|..+.. ..|+.+|+++|.............+++|++||+ ||++.....
T Consensus 142 ~gvavd~~s~~g~-Lyv~D~~----~~I~~id~~~g~v~~~~~~~~~P~giavd~dG~-lyVad~~~~------------ 203 (433)
T 4hw6_A 142 WRMMFDPNSNYDD-LYWVGQR----DAFRHVDFVNQYVDIKTTNIGQCADVNFTLNGD-MVVVDDQSS------------ 203 (433)
T ss_dssp CEEEECTTTTTCE-EEEECBT----SCEEEEETTTTEEEEECCCCSCEEEEEECTTCC-EEEEECCSC------------
T ss_pred ceEEEccccCCCE-EEEEeCC----CCEEEEECCCCEEEEeecCCCCccEEEECCCCC-EEEEcCCCC------------
Confidence 47889995 344 4555543 479999998887543222222247899999999 666542110
Q ss_pred cCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCC
Q 004766 213 DSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGL 292 (732)
Q Consensus 213 ~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~ 292 (732)
.....++.............+. ... ...+++++|++..|++... . ...|+.++.+++..
T Consensus 204 --~~~~gv~~~~~~~~~~~~~~~~-~~~---~P~giavd~~~G~lyv~d~--~--~~~V~~~d~~~g~~----------- 262 (433)
T 4hw6_A 204 --DTNTGIYLFTRASGFTERLSLC-NAR---GAKTCAVHPQNGKIYYTRY--H--HAMISSYDPATGTL----------- 262 (433)
T ss_dssp --TTSEEEEEECGGGTTCCEEEEE-ECS---SBCCCEECTTTCCEEECBT--T--CSEEEEECTTTCCE-----------
T ss_pred --cccceEEEEECCCCeecccccc-ccC---CCCEEEEeCCCCeEEEEEC--C--CCEEEEEECCCCeE-----------
Confidence 0112244444332221111121 111 1135788995555655432 1 35799999875420
Q ss_pred CCcEEeee-cc-c-ceEEEEEecCCeEEEEeCCCCCCceEEEEeCC
Q 004766 293 LPFVKLID-GF-D-AQYEVIANDDTVFTFLTNKDAPKYKIIRVDLK 335 (732)
Q Consensus 293 ~~~~~l~~-~~-~-~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~ 335 (732)
...+.. +. . .....++|+|+.||+.-.. +.+|++++.+
T Consensus 263 --~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~---~~~I~~~~~d 303 (433)
T 4hw6_A 263 --TEEEVMMDTKGSNFHIVWHPTGDWAYIIYNG---KHCIYRVDYN 303 (433)
T ss_dssp --EEEEEECSCCSSCEEEEECTTSSEEEEEETT---TTEEEEEEBC
T ss_pred --EEEEeccCCCCCcccEEEeCCCCEEEEEeCC---CCEEEEEeCC
Confidence 012211 11 1 1123589999888875432 4578888765
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=96.66 E-value=0.71 Score=48.98 Aligned_cols=120 Identities=8% Similarity=0.094 Sum_probs=68.9
Q ss_pred EEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecccc-cceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcc
Q 004766 134 LIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADAL-SWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTET 212 (732)
Q Consensus 134 ~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~-~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~ 212 (732)
..+++++|+|++|.++-..++.....+.+++.+++......+ ......+++++|++..||++..
T Consensus 181 P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~~~~~~l~~~~~p~giavdp~~g~lyv~d~--------------- 245 (430)
T 3tc9_A 181 VRTICWTHEADSMIITNDQNNNDRPNNYILTRESGFKVITELTKGQNCNGAETHPINGELYFNSW--------------- 245 (430)
T ss_dssp EEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTSCSEEEEEECSSCCCEEECTTTCCEEEEET---------------
T ss_pred cceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCceeeeeeeccCCCceEEEEeCCCCEEEEEEC---------------
Confidence 457899999997765543333333456667654432210111 1112367889995556777632
Q ss_pred cCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCC
Q 004766 213 DSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSA 278 (732)
Q Consensus 213 ~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~ 278 (732)
...+|++++..++... .++.... ..+-..++++|||++|++.... ...|+.++.++
T Consensus 246 ---~~~~V~~~~~~~~~~~--~~~~~~~-~~~P~gia~~pdG~~lyv~d~~----~~~I~~~~~d~ 301 (430)
T 3tc9_A 246 ---NAGQVFRYDFTTQETT--PLFTIQD-SGWEFHIQFHPSGNYAYIVVVN----QHYILRSDYDW 301 (430)
T ss_dssp ---TTTEEEEEETTTTEEE--EEEECSS-SSCCEEEEECTTSSEEEEEETT----TTEEEEEEEET
T ss_pred ---CCCEEEEEECCCCcEE--EEEEcCC-CCcceeEEEcCCCCEEEEEECC----CCEEEEEeCCc
Confidence 3357999988754321 2333322 1233578999999988776432 34577776553
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=96.66 E-value=0.36 Score=53.93 Aligned_cols=227 Identities=9% Similarity=0.021 Sum_probs=0.0
Q ss_pred EEEEEECCCC--ceecccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCCcccEEEEEECCCCCCCCeEEE
Q 004766 159 TIKLMRIEDQ--IVEADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCW 236 (732)
Q Consensus 159 ~i~v~dl~~g--~~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~ 236 (732)
+|+++|+++. +............+++|++++..||++ .....+|++.++.+......++.
T Consensus 19 ~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~s------------------D~~~~~I~r~~~~g~~~~~~v~~ 80 (619)
T 3s94_A 19 DLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWS------------------DVSEEAIKRTEFNKTESVQNVVV 80 (619)
T ss_dssp BEEEECCC---------CBCCSCEEEEEEETTTTEEEEE------------------ETTTTEEEEEEC-----CEEEEC
T ss_pred cEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEE------------------ECCCCeEEEEEccCCCceEEEEe
Q ss_pred ecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCCCCcEEee-ecccceEE-EEEecCC
Q 004766 237 KDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLI-DGFDAQYE-VIANDDT 314 (732)
Q Consensus 237 ~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~-~~s~dg~ 314 (732)
..-..+ .++++.+.++.|++...... .|.++++++.. .+.+. ........ .+.|.++
T Consensus 81 ~~~~~P---~GlAvD~~~~~ly~~d~~~~----~I~v~~~dG~~--------------~~~l~~~~l~~P~~Iavdp~~g 139 (619)
T 3s94_A 81 SGLLSP---DGLACDWLGEKLYWTDSETN----RIEVSNLDGSL--------------RKVLFWQELDQPRAIALDPSSG 139 (619)
T ss_dssp SSCSCE---EEEEEETTTTEEEEEETTTT----EEEEEETTSCS--------------CEEEECSSCSCCCCEEEETTTT
T ss_pred CCCCCc---CeEEEEecCCEEEEEeCCCC----EEEEEECCCCC--------------EEEEEeCCCCCCceEEEecCCC
Q ss_pred eEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecC-CEEEEEEecCCeeEEEEEeCCCCceeeeccccc
Q 004766 315 VFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNL-NQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEI 393 (732)
Q Consensus 315 ~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~-~~l~~~~~~~g~~~l~~~d~~~g~~~~~l~~~~ 393 (732)
.||+.-- +...+|++.++++.. .+.++... -..-.++.+..+ ++||+..... ..|++++++.+.....+....
T Consensus 140 ~ly~tD~--g~~~~I~r~~~dG~~-~~~l~~~~-~~~P~Glald~~~~~LY~aD~~~--~~I~~~~~dG~~~~~~~~~~~ 213 (619)
T 3s94_A 140 FMYWTDW--GEVPKIERAGMDGSS-RFIIINSE-IYWPNGLTLDYEEQKLYWADAKL--NFIHKSNLDGTNRQAVVKGSL 213 (619)
T ss_dssp EEEEEEC--SSSCEEEEEETTSCS-CEEEECSS-CSSEEEEEEETTTTEEEEEETTT--CCEEEESSSCCEEC-------
T ss_pred eEEEecc--CCCCEEEEEECCCCc-eEEEEeCC-CCCCcEEEEEccCCEEEEEeCCC--CeEEEecCCCCccEEEEeCCC
Q ss_pred ceeeEeecccCCcEEEEEEecCCCCceEEEEECCCCCCceEEE
Q 004766 394 GSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTETPEMKIF 436 (732)
Q Consensus 394 g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~~~~~~~l 436 (732)
....+++...+ .+|+ +-..-..++++|..+++ ..+.+
T Consensus 214 ~~P~gi~~~~~--~ly~---td~~~~~V~~~d~~tg~-~~~~i 250 (619)
T 3s94_A 214 PHPFALTLFED--ILYW---TDWSTHSILACNKYTGE-GLREI 250 (619)
T ss_dssp --CCCEEESSS--EEEE---ECTTTCSEEEEESSSCC-CCEEC
T ss_pred CCceEEEEeCC--EEEE---ecCCCCEEEEEECCCCc-ccEEE
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=96.64 E-value=0.3 Score=50.16 Aligned_cols=175 Identities=12% Similarity=0.041 Sum_probs=88.0
Q ss_pred EEEEEEECCC--Cceecccccc-------eeeeeEEEEe--CCcEEEEEEecCCCCCCCCCCCCcccCCcccEEEEEECC
Q 004766 158 ATIKLMRIED--QIVEADALSW-------FKFSSIAWTH--DSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLG 226 (732)
Q Consensus 158 ~~i~v~dl~~--g~~~~~~~~~-------~~~~~~~Wsp--Dg~~l~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~lg 226 (732)
..|+++|+++ ++.....+.+ ....++...+ ||+.-+|+.+... ......|+.++.+
T Consensus 83 G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~-------------~~s~ielf~~d~~ 149 (355)
T 3sre_A 83 GKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPG-------------SSSTVEVFKFQEE 149 (355)
T ss_dssp CEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECST-------------TCCEEEEEEEETT
T ss_pred CeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCC-------------CCCeEEEEEEECC
Confidence 4788888873 3322212211 1335677666 5664445544331 1122356666665
Q ss_pred CCCCCCeEEEecCCC-CeeEEEeEEecCCcEEEEEEecCC--------------cceEEEEEEeCCCCCCCcccccccCC
Q 004766 227 TKQSEDILCWKDPEH-PKYIFSGHVTEDGQYLVMCIEENC--------------DPVNKVYYCDLSALPEGLEGFKKRDG 291 (732)
Q Consensus 227 t~~~~~~~v~~~~~~-~~~~~~~~~SpDg~~l~~~~~~~~--------------~~~~~l~~~d~~~~~~~~~~~~~~~~ 291 (732)
++. ...+-+.... -....++...++|+..+ .+... .....||.++...
T Consensus 150 ~~~--~~~~~~~~g~~~~~pND~~v~~~G~fyv--t~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~~------------- 212 (355)
T 3sre_A 150 EKS--LLHLKTIRHKLLPSVNDIVAVGPEHFYA--TNDHYFIDPYLKSWEMHLGLAWSFVTYYSPND------------- 212 (355)
T ss_dssp TTE--EEEEEEECCTTCSSEEEEEEEETTEEEE--EESCSCSSHHHHHHHHHTTCCCEEEEEECTTC-------------
T ss_pred CCE--EEEEeccccCCCCCCceEEEeCCCCEEe--cCCcEeCCcccccchhhccCCccEEEEEECCe-------------
Confidence 432 1222221111 12245788899998543 22210 1246788887531
Q ss_pred CCCcEEeeecccce-EEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCc--eEeccCCCCCceeEEEEec-CCEEEEEE
Q 004766 292 LLPFVKLIDGFDAQ-YEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDW--FEVIPEAERDVLESATAVN-LNQMIVSY 367 (732)
Q Consensus 292 ~~~~~~l~~~~~~~-~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~--~~l~~~~~~~~l~~~~~~~-~~~l~~~~ 367 (732)
.+.+..+.... -..|||||+.+|+.... ..+|++++++..... ..++. . .....++.+.. ++.+++..
T Consensus 213 ---~~~~~~~l~~pNGia~spDg~~lYvadt~---~~~I~~~~~~~~g~l~~~~~~~-~-~g~PDGi~vD~e~G~lwva~ 284 (355)
T 3sre_A 213 ---VRVVAEGFDFANGINISPDGKYVYIAELL---AHKIHVYEKHANWTLTPLRVLS-F-DTLVDNISVDPVTGDLWVGC 284 (355)
T ss_dssp ---CEEEEEEESSEEEEEECTTSSEEEEEEGG---GTEEEEEEECTTSCEEEEEEEE-C-SSEEEEEEECTTTCCEEEEE
T ss_pred ---EEEeecCCcccCcceECCCCCEEEEEeCC---CCeEEEEEECCCCcEecCEEEe-C-CCCCceEEEeCCCCcEEEEe
Confidence 23333333221 12599999999986543 357888887642211 22332 1 23456677776 36777655
Q ss_pred ecC
Q 004766 368 LSD 370 (732)
Q Consensus 368 ~~~ 370 (732)
..+
T Consensus 285 ~~~ 287 (355)
T 3sre_A 285 HPN 287 (355)
T ss_dssp ESC
T ss_pred cCC
Confidence 433
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=96.62 E-value=0.006 Score=69.60 Aligned_cols=206 Identities=7% Similarity=0.025 Sum_probs=114.7
Q ss_pred EeEEECCCCcEEEEEEeccCCceEEEEEEECCC----Cceecccccc-eeeeeEEEEeCCcEEEEEEecCCCCCCCCCCC
Q 004766 135 IKVSVSEDAKYLAYALSYSGSDWATIKLMRIED----QIVEADALSW-FKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAG 209 (732)
Q Consensus 135 ~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~----g~~~~~~~~~-~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~ 209 (732)
.++.|++++.+|.++ +..+. .|+++++.+ .......... ....++++.+.++.||++-
T Consensus 409 ~gla~d~~~~~Ly~s-D~~~~---~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD------------- 471 (699)
T 1n7d_A 409 VALDTEVASNRIYWS-DLSQR---MICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTD------------- 471 (699)
T ss_dssp CCCEEETTTTEEEEC-CTTTT---SBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECC-------------
T ss_pred EEEccccccCeEEEE-ecCCC---eEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEe-------------
Confidence 367889988876554 43332 688889876 2211111111 1125677766666777652
Q ss_pred CcccCCcccEEEEEECCCCCCCCeEEEecC-CCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccc
Q 004766 210 TETDSNLYHEFYYHFLGTKQSEDILCWKDP-EHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKK 288 (732)
Q Consensus 210 ~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~-~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~ 288 (732)
....+|++.++.+... ..+.... ..+ .+++++|++.+|+++... . ...|+++++++..
T Consensus 472 -----~~~~~I~v~d~dg~~~--~~l~~~~~~~P---~giavDp~~g~ly~td~~-~--~~~I~~~~~dG~~-------- 530 (699)
T 1n7d_A 472 -----SVLGTVSVADTKGVKR--KTLFREQGSKP---RAIVVDPVHGFMYWTDWG-T--PAKIKKGGLNGVD-------- 530 (699)
T ss_dssp -----TTTSCEEEEBSSSCCE--EEECCCSSCCC---CCEECCSSSSCCEECCCS-S--SCCEEBCCSSSCC--------
T ss_pred -----ccCCeEEEEecCCCce--EEEEeCCCCCc---ceEEEccCCCcEEEcccC-C--CCeEEEEeCCCCC--------
Confidence 1234577777764321 1222211 122 367889988888765422 1 2568888876521
Q ss_pred cCCCCCcEEeee-ccc-ceEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCC-CCCceeEEEEecCCEEEE
Q 004766 289 RDGLLPFVKLID-GFD-AQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEA-ERDVLESATAVNLNQMIV 365 (732)
Q Consensus 289 ~~~~~~~~~l~~-~~~-~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~-~~~~l~~~~~~~~~~l~~ 365 (732)
.+.+.. ... ..-..|++++++||+.-. ...+|.++++++.. .+.++... ......++.+.. ++||+
T Consensus 531 ------~~~l~~~~l~~PnGlavd~~~~~LY~aD~---~~~~I~~~d~dG~~-~~~~~~~~~~~~~P~glavd~-~~lyw 599 (699)
T 1n7d_A 531 ------IYSLVTENIQWPNGITLDLLSGRLYWVDS---KLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVFE-DKVFW 599 (699)
T ss_dssp ------CCEESCSSCSSCCCEEECTTTCCEEEEET---TTTEEEEECSSSSC-CEEECCCSSSCSSCCCCEEET-TEEEE
T ss_pred ------eeEEEeCCCCCccEEEEeccCCEEEEEec---CCCeEEEEccCCCc-eEEEEecCCcCCCceEeEEEC-CEEEE
Confidence 111211 111 112357888888887543 24689999997654 34454321 112223566666 67887
Q ss_pred EEecCCeeEEEEEeCCCCceeeeccc
Q 004766 366 SYLSDVKYVLQIRDLKNGSLLHQLPI 391 (732)
Q Consensus 366 ~~~~~g~~~l~~~d~~~g~~~~~l~~ 391 (732)
+.... .+|.+++..+|+.++.|..
T Consensus 600 td~~~--~~V~~~d~~~G~~~~~i~~ 623 (699)
T 1n7d_A 600 TDIIN--EAIFSANRLTGSDVNLLAE 623 (699)
T ss_dssp ECSTT--TCEEEEETTTEEEEECCCT
T ss_pred EeCCC--CeEEEEEccCCCceEEeec
Confidence 76443 5799999877876666644
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=96.57 E-value=0.12 Score=51.96 Aligned_cols=163 Identities=6% Similarity=-0.019 Sum_probs=87.4
Q ss_pred EEeEEECCCCcEEEEEEeccC-----------CceEEEEEEECCCCceecccccceeeeeEEEE----eCCcEEEEEEec
Q 004766 134 LIKVSVSEDAKYLAYALSYSG-----------SDWATIKLMRIEDQIVEADALSWFKFSSIAWT----HDSKGFFYSRYP 198 (732)
Q Consensus 134 ~~~~~~SPDG~~la~~~~~~G-----------~e~~~i~v~dl~~g~~~~~~~~~~~~~~~~Ws----pDg~~l~y~~~~ 198 (732)
+..+.++|||+.+ ++....+ .....|+.+|.+ |+............+++|+ |||+.|+++..
T Consensus 119 ~~~i~~d~~g~l~-v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~- 195 (314)
T 1pjx_A 119 CNDCAFDYEGNLW-ITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAET- 195 (314)
T ss_dssp CCEEEECTTSCEE-EEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEESSEEEEEEEECTTSCEEEEEEEET-
T ss_pred CcCEEECCCCCEE-EEecCcccccccccccccCCCCeEEEECCC-CCEEEeccCCCCcceEEEecccCCCCCEEEEEEC-
Confidence 4578899999743 3322110 012478888876 5533211111123678999 99988877632
Q ss_pred CCCCCCCCCCCCcccCCcccEEEEEECC-CCCCCCe-EEEecCCCC-eeEEEeEEecCCcEEEEEEecCCcceEEEEEEe
Q 004766 199 APKEGKDMDAGTETDSNLYHEFYYHFLG-TKQSEDI-LCWKDPEHP-KYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCD 275 (732)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~v~~~~lg-t~~~~~~-~v~~~~~~~-~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d 275 (732)
....|+++++. ++..... .+...+... ....++++++||+..+ .... ...|++++
T Consensus 196 -----------------~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v-~~~~----~~~i~~~d 253 (314)
T 1pjx_A 196 -----------------PTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLV-ANWG----SSHIEVFG 253 (314)
T ss_dssp -----------------TTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEE-EEET----TTEEEEEC
T ss_pred -----------------CCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEE-EEcC----CCEEEEEc
Confidence 22467777764 2211111 122222211 3445788999997543 3221 23588888
Q ss_pred CCCCCCCcccccccCCCCCcEEeeecccc-eEEEEEecCCeEEEEeCCCCCCceEEEEeCCCC
Q 004766 276 LSALPEGLEGFKKRDGLLPFVKLIDGFDA-QYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEP 337 (732)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~ 337 (732)
.+++.. ...+...... .-..++++|+.||+.+..+ ..|++++++..
T Consensus 254 ~~~g~~-------------~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~---~~l~~~~~~~~ 300 (314)
T 1pjx_A 254 PDGGQP-------------KMRIRCPFEKPSNLHFKPQTKTIFVTEHEN---NAVWKFEWQRN 300 (314)
T ss_dssp TTCBSC-------------SEEEECSSSCEEEEEECTTSSEEEEEETTT---TEEEEEECSSC
T ss_pred CCCCcE-------------eEEEeCCCCCceeEEECCCCCEEEEEeCCC---CeEEEEeCCCC
Confidence 774320 1222111111 1124678888888766532 47899987654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 732 | ||||
| d1qfma1 | 430 | b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-termin | 1e-106 | |
| d1qfma2 | 280 | c.69.1.4 (A:431-710) Prolyl oligopeptidase, C-term | 2e-43 | |
| d1mpxa2 | 381 | c.69.1.21 (A:24-404) Alpha-amino acid ester hydrol | 1e-15 | |
| d1xfda2 | 258 | c.69.1.24 (A:592-849) Dipeptidyl aminopeptidase-li | 1e-13 | |
| d1sfra_ | 288 | c.69.1.3 (A:) Antigen 85a {Mycobacterium tuberculo | 5e-13 | |
| d2b9va2 | 385 | c.69.1.21 (A:50-434) Alpha-amino acid ester hydrol | 2e-12 | |
| d2bgra2 | 258 | c.69.1.24 (A:509-766) Dipeptidyl peptidase IV/CD26 | 4e-10 | |
| d1vlqa_ | 322 | c.69.1.25 (A:) Acetyl xylan esterase TM0077 {Therm | 7e-10 | |
| d2hu7a2 | 260 | c.69.1.33 (A:322-581) Acylamino-acid-releasing enz | 1e-08 | |
| d1r88a_ | 267 | c.69.1.3 (A:) Antigen pt51/mpb51 {Mycobacterium tu | 2e-07 | |
| d1dqza_ | 280 | c.69.1.3 (A:) Antigen 85c {Mycobacterium tuberculo | 5e-07 | |
| d2d81a1 | 318 | c.69.1.37 (A:21-338) Polyhydroxybutyrate depolymer | 2e-05 | |
| g1tme.1 | 280 | b.121.4.1 (4:,2:) Theilovirus capsid proteins {The | 0.001 | |
| d2gzsa1 | 265 | c.69.1.38 (A:41-305) Enterobactin and salmochelin | 0.001 |
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 430 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Score = 329 bits (844), Expect = e-106
Identities = 211/436 (48%), Positives = 290/436 (66%), Gaps = 11/436 (2%)
Query: 10 SLQYPVARRDESVVDDYHGVKIVDPYRWLEDPDAEEVKDFVQKQVELTDSVLKNCDVRDK 69
S QYP RDE+ + DYHG K+ DPY WLEDPD+E+ K FV+ Q ++T L+ C +R
Sbjct: 3 SFQYPDVYRDETAIQDYHGHKVCDPYAWLEDPDSEQTKAFVEAQNKITVPFLEQCPIRGL 62
Query: 70 LREKITKLFDSPRYDAPFKRGNKYFYFHNTGLQPQSVLYVQDSLDAKAKVLLDPNTLSDD 129
+E++T+L+D P+Y FK+G +YFYF+NTGLQ Q VLYVQDSL+ +A+V LDPN LSDD
Sbjct: 63 YKERMTELYDYPKYSCHFKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDD 122
Query: 130 GTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWFKFSSIAWTHDS 189
GT AL + SED +Y AY LS SGSDW TIK M+++ D L KFS +AWTHD
Sbjct: 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDG 182
Query: 190 KGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGH 249
KG FY+ YP D GTET +NL+ + YYH LGT QSEDILC + P+ PK++
Sbjct: 183 KGMFYNAYPQQDGKSD---GTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAE 239
Query: 250 VTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVI 309
+++DG+Y+++ I E CDPVN+++YCDL G+ G L +VKLID F+ +Y+ +
Sbjct: 240 LSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGI------LKWVKLIDNFEGEYDYV 293
Query: 310 ANDDTVFTFLTNKDAPKYKIIRVDLKEPN--DWFEVIPEAERDVLESATAVNLNQMIVSY 367
N+ TVFTF TN+ +P Y++I +D +P W ++PE E+DVLE V N +++ Y
Sbjct: 294 TNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCY 353
Query: 368 LSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLK 427
L DVK LQ+ DL G+LL P+E+GSV S +++D+ +F FTSFL PGI+Y C+L
Sbjct: 354 LHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLT 413
Query: 428 TETPEMKIFRETIIPG 443
E E ++FRE + G
Sbjct: 414 KEELEPRVFREVTVKG 429
|
| >d1qfma2 c.69.1.4 (A:431-710) Prolyl oligopeptidase, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Prolyl oligopeptidase, C-terminal domain domain: Prolyl oligopeptidase, C-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Score = 156 bits (393), Expect = 2e-43
Identities = 180/287 (62%), Positives = 219/287 (76%), Gaps = 8/287 (2%)
Query: 445 DRSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRT 504
D S++ Q+F PSKDG TKIPMFIV KK IKLDGSHP LYGYGGFNIS+TP++SVSR
Sbjct: 1 DASDYQTVQIFYPSKDG-TKIPMFIVHKKGIKLDGSHPAFLYGYGGFNISITPNYSVSRL 59
Query: 505 ILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSRKLC 564
I +RH+G V +ANIRGGGEYGE WHKGG LA KQNCFDDF A+EYLI GYT ++L
Sbjct: 60 IFVRHMGGVLAVANIRGGGEYGETWHKGGILANKQNCFDDFQCAAEYLIKEGYTSPKRLT 119
Query: 565 IEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHAWVSDFGCSEEEEEFY 624
I GGSNGGLLV C NQRPDLFGC +A VGVMDML++HK+TIGHAW +D+GCS+ ++ F
Sbjct: 120 INGGSNGGLLVATCANQRPDLFGCVIAQVGVMDMLKFHKYTIGHAWTTDYGCSDSKQHFE 179
Query: 625 WLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLE 684
WLIKYSPLHNV+ P + YPS LLLTADHDDRVVPLHSLK +AT+QY++
Sbjct: 180 WLIKYSPLHNVKLPEADDIQ----YPSMLLLTADHDDRVVPLHSLKFIATLQYIVG---R 232
Query: 685 NSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLGASWV 731
+ Q NP++ ++ KAGHG G PT K+I+E +D + F+A+ L W+
Sbjct: 233 SRKQNNPLLIHVDTKAGHGAGKPTAKVIEEVSDMFAFIARCLNIDWI 279
|
| >d1mpxa2 c.69.1.21 (A:24-404) Alpha-amino acid ester hydrolase {Xanthomonas citri [TaxId: 346]} Length = 381 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: Alpha-amino acid ester hydrolase species: Xanthomonas citri [TaxId: 346]
Score = 77.1 bits (188), Expect = 1e-15
Identities = 26/183 (14%), Positives = 56/183 (30%), Gaps = 17/183 (9%)
Query: 445 DRSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLL----YGYGGFNISVTPSFS 500
+++ +V +P +DG K+ IV K + P +L Y G +
Sbjct: 18 ASNDYIKREVMIPMRDG-VKLHTVIVLPKG---AKNAPIVLTRTPYDASGRTERLASPHM 73
Query: 501 VSRTILMRHL----GAVFCIANIRGGGEYGEEWHKGGAL-----AKKQNCFDDFISASEY 551
+ G + ++RG ++ L + + D ++
Sbjct: 74 KDLLSAGDDVFVEGGYIRVFQDVRGKYGSEGDYVMTRPLRGPLNPSEVDHATDAWDTIDW 133
Query: 552 LISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHAWV 611
L+ + K+ + G S G V + A+ ++D + A+
Sbjct: 134 LVKNVSESNGKVGMIGSSYEGFTVVMALTNPHPALKVAVPESPMIDGWMGDDWFNYGAFR 193
Query: 612 SDF 614
Sbjct: 194 QVN 196
|
| >d1xfda2 c.69.1.24 (A:592-849) Dipeptidyl aminopeptidase-like protein 6, DPP6, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: DPP6 catalytic domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 69.0 bits (167), Expect = 1e-13
Identities = 39/221 (17%), Positives = 67/221 (30%), Gaps = 14/221 (6%)
Query: 458 SKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGG-FNISVTPSFSVS-RTILMRHLGAVFC 515
D +PM I+ +P LL G + SV F VS T+++ GAV
Sbjct: 9 EIDD-YNLPMQILKPATFTDTTHYPLLLVVDGTPGSQSVAEKFEVSWETVMVSSHGAVVV 67
Query: 516 IANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLV 575
+ RG G G + D + A ++ Y ++ + G GG L
Sbjct: 68 KCDGRGSGFQGTKLLHEVRRRLGLLEEKDQMEAVRTMLKEQYIDRTRVAVFGKDYGGYLS 127
Query: 576 GACINQRPDLFGCALAHVGVMDMLRYHKFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNV 635
+ + + G + + K G + Y H V
Sbjct: 128 TYILPAKGENQGQTFTCGSALSPITDFKLYASAFSERYLGLHGLDNRAYE--MTKVAHRV 185
Query: 636 RRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQ 676
EQ D+++ H+ +L+ +
Sbjct: 186 SALEEQQFLIIHPT---------ADEKIHFQHTAELITQLI 217
|
| >d1sfra_ c.69.1.3 (A:) Antigen 85a {Mycobacterium tuberculosis [TaxId: 1773]} Length = 288 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Mycobacterial antigens domain: Antigen 85a species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 68.1 bits (165), Expect = 5e-13
Identities = 35/212 (16%), Positives = 63/212 (29%), Gaps = 17/212 (8%)
Query: 444 FDRSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCL--LYGYGGFNISVTPSFSV 501
F R V + VPS I + S + P L L G + +
Sbjct: 2 FSRPGLPVEYLQVPSPSMGRDIKVQFQSG-----GANSPALYLLDGLRAQDDFSGWDINT 56
Query: 502 SRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQN-CFDDFISAS--EYLISAGYT 558
G + Y + + A Q ++ F+++ +L + +
Sbjct: 57 PAFEWYDQSGLSVVMPVGGQSSFYSDWYQPACGKAGCQTYKWETFLTSELPGWLQANRHV 116
Query: 559 QSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHAWVSDFGCSE 618
+ + G S P F A A G++D + T+ + D G +
Sbjct: 117 KPTGSAVVGLSMAASSALTLAIYHPQQFVYAGAMSGLLDPSQAMGPTLIGLAMGDAGGYK 176
Query: 619 EEEEF------YWLIKYSPLHNVRRPWEQNPD 644
+ + W + PL NV + N
Sbjct: 177 ASDMWGPKEDPAWQ-RNDPLLNVGKLIANNTR 207
|
| >d2b9va2 c.69.1.21 (A:50-434) Alpha-amino acid ester hydrolase {Acetobacter pasteurianus [TaxId: 438]} Length = 385 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: Alpha-amino acid ester hydrolase species: Acetobacter pasteurianus [TaxId: 438]
Score = 67.4 bits (163), Expect = 2e-12
Identities = 33/233 (14%), Positives = 68/233 (29%), Gaps = 25/233 (10%)
Query: 437 RETIIPGFDRSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLL----YGYGGFN 492
+P + ++ +V VP +DG K+ IV KN + P LL Y G
Sbjct: 14 ASVHMPTDQQRDYIKREVMVPMRDG-VKLYTVIVIPKN---ARNAPILLTRTPYNAKGRA 69
Query: 493 ISVTPSFSVSRTILMRH-----LGAVFCIANIRGGGEYGEEWHKGGALAKKQNCF----- 542
V + ++ + G + +IRG ++ N
Sbjct: 70 NRVPNALTMREVLPQGDDVFVEGGYIRVFQDIRGKYGSQGDYVMTRPPHGPLNPTKTDET 129
Query: 543 DDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYH 602
D ++L+ + ++ + G S G V + A ++D
Sbjct: 130 TDAWDTVDWLVHNVPESNGRVGMTGSSYEGFTVVMALLDPHPALKVAAPESPMVDGWMGD 189
Query: 603 KFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLL 655
+ A+ Y++ + + ++ D +
Sbjct: 190 DWFHYGAFRQGAFD-------YFVSQMTARGGGNDIPRRDADDYTNFLKAGSA 235
|
| >d2bgra2 c.69.1.24 (A:509-766) Dipeptidyl peptidase IV/CD26, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: DPP6 catalytic domain-like domain: Dipeptidyl peptidase IV/CD26, C-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Score = 58.7 bits (140), Expect = 4e-10
Identities = 31/226 (13%), Positives = 65/226 (28%), Gaps = 16/226 (7%)
Query: 453 QVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGG-FNISVTPSFSVSRTI-LMRHL 510
++ + TK ++ + +P LL Y G + F ++ L
Sbjct: 5 KLDFIILNE-TKFWYQMILPPHFDKSKKYPLLLDVYAGPCSQKADTVFRLNWATYLASTE 63
Query: 511 GAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSN 570
+ + RG G G++ +D I A+ G+ ++++ I G S
Sbjct: 64 NIIVASFDGRGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSY 123
Query: 571 GGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHAWVSDFGCSEEEEEFYWLIKYS 630
GG + + +F C +A V Y + +
Sbjct: 124 GGYVTSMVLGSGSGVFKCGIAVAPVSRWEYYDSVYTERYMGLPTPEDNLDHYRNSTVMSR 183
Query: 631 PLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQ 676
+ + + + DD V S ++ +
Sbjct: 184 AENFKQVEYLL-------------IHGTADDNVHFQQSAQISKALV 216
|
| >d1vlqa_ c.69.1.25 (A:) Acetyl xylan esterase TM0077 {Thermotoga maritima [TaxId: 2336]} Length = 322 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetyl xylan esterase-like domain: Acetyl xylan esterase TM0077 species: Thermotoga maritima [TaxId: 2336]
Score = 58.6 bits (140), Expect = 7e-10
Identities = 39/304 (12%), Positives = 69/304 (22%), Gaps = 51/304 (16%)
Query: 444 FDRSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSR 503
+ V G +I +++ K + PC++ G P
Sbjct: 48 SHLKTVEAYDVTFSGYRG-QRIKGWLLVPKLE--EEKLPCVVQYIGYNGGRGFPH----D 100
Query: 504 TILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQN---------------------CF 542
+ +G + + + RG G + + F
Sbjct: 101 WLFWPSMGYICFVMDTRGQGSGWLKGDTPDYPEGPVDPQYPGFMTRGILDPRTYYYRRVF 160
Query: 543 DDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYH 602
D + A E S ++ I GGS GG + A + R
Sbjct: 161 TDAVRAVEAAASFPQVDQERIVIAGGSQGGGIALAVSALSKKAKALLCDVPFLCHFRRAV 220
Query: 603 KFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDR 662
+ H + K + ++ L D+
Sbjct: 221 QLVDTHPY-----AEITNFLKTHRDKEEIVFRTLSYFDGVNFAARAKIPALFSVGLMDNI 275
Query: 663 VVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFM 722
P P RI H G Q A ++ F+
Sbjct: 276 CPPSTVFAAYNYYA-------------GPKEIRIYPYNNHEGGGSFQ-----AVEQVKFL 317
Query: 723 AKML 726
K+
Sbjct: 318 KKLF 321
|
| >d2hu7a2 c.69.1.33 (A:322-581) Acylamino-acid-releasing enzyme, C-terminal donain {Aeropyrum pernix [TaxId: 56636]} Length = 260 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acylamino-acid-releasing enzyme, C-terminal donain domain: Acylamino-acid-releasing enzyme, C-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Score = 54.5 bits (129), Expect = 1e-08
Identities = 35/234 (14%), Positives = 67/234 (28%), Gaps = 18/234 (7%)
Query: 443 GFDRSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVS 502
RS V+V S DG +++P +++ P ++ +GG + S+
Sbjct: 4 DLRRSIAGSRLVWVESFDG-SRVPTYVLESGRA--PTPGPTVVLVHGGPFAEDSDSWDTF 60
Query: 503 RTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSRK 562
L V G E K + ++ + + +
Sbjct: 61 AASLAAAGFHVVMPNYRGSTGYGEEWRLKII---GDPCGGELEDVSAAARWARESGLASE 117
Query: 563 LCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHAWVSDFGCSEEEEE 622
L I G S GG + + +P LF +A V+D ++ + + E
Sbjct: 118 LYIMGYSYGGYMTLCALTMKPGLFKAGVAGASVVDWEEMYELSDAAFRNFIEQLTGGSRE 177
Query: 623 FYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQ 676
+P +D R L+L+ +
Sbjct: 178 IMR-------SRSPINHVDRIKEPLALI-----HPQNDSRTPLKPLLRLMGELL 219
|
| >d1r88a_ c.69.1.3 (A:) Antigen pt51/mpb51 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 267 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Mycobacterial antigens domain: Antigen pt51/mpb51 species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 50.7 bits (120), Expect = 2e-07
Identities = 31/201 (15%), Positives = 56/201 (27%), Gaps = 18/201 (8%)
Query: 451 VHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHL 510
+ VPS IP+ ++ + LL + + + +
Sbjct: 4 YENLMVPSPSMGRDIPVAFLAGGPHAV-----YLLDAFNAGPDVSNWVTAGNAMNTLAGK 58
Query: 511 GAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISA--SEYLISAGYTQSRKLCIEGG 568
G G W + G+ +D F+SA ++L + G
Sbjct: 59 GISVVAPA-GGAYSMYTNWEQDGSKQ-----WDTFLSAELPDWLAANRGLAPGGHAAVGA 112
Query: 569 SNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHAWVSDFGCSEEEEEFYWLI- 627
+ GG A PD FG A + G + A + FG + +
Sbjct: 113 AQGGYGAMALAAFHPDRFGFAGSMSGFLYPSNTTTNGAIAAGMQQFGGVDTNGMWGAPQL 172
Query: 628 ----KYSPLHNVRRPWEQNPD 644
+ P + + N
Sbjct: 173 GRWKWHDPWVHASLLAQNNTR 193
|
| >d1dqza_ c.69.1.3 (A:) Antigen 85c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Mycobacterial antigens domain: Antigen 85c species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 49.5 bits (117), Expect = 5e-07
Identities = 26/205 (12%), Positives = 50/205 (24%), Gaps = 19/205 (9%)
Query: 451 VHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPC--LLYGYGGFNISVTPSFSVSRTILMR 508
V + VPS I + G LL G + +
Sbjct: 6 VEYLQVPSASMGRDIKVQF-------QGGGPHAVYLLDGLRAQDDYNGWDINTPAFEEYY 58
Query: 509 HLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLI----SAGYTQSRKLC 564
G I + G + +W++ + + + + +
Sbjct: 59 QSGLSV-IMPVGGQSSFYTDWYQPSQSNGQNYTYKWETFLTREMPAWLQANKGVSPTGNA 117
Query: 565 IEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHAWVSDFGCSEEEEEFY 624
G S G P F A + G ++ T+ ++D G +
Sbjct: 118 AVGLSMSGGSALILAAYYPQQFPYAASLSGFLNPSESWWPTLIGLAMNDSGGYNANSMWG 177
Query: 625 WL-----IKYSPLHNVRRPWEQNPD 644
+ P+ + R N
Sbjct: 178 PSSDPAWKRNDPMVQIPRLVANNTR 202
|
| >d2d81a1 c.69.1.37 (A:21-338) Polyhydroxybutyrate depolymerase {Penicillium funiculosum [TaxId: 28572]} Length = 318 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PHB depolymerase-like domain: Polyhydroxybutyrate depolymerase species: Penicillium funiculosum [TaxId: 28572]
Score = 45.0 bits (106), Expect = 2e-05
Identities = 12/119 (10%), Positives = 31/119 (26%), Gaps = 15/119 (12%)
Query: 561 RKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMD---MLRYHKFTIGHAWVSDFGCS 617
+ + G ++GG + D+F + + +
Sbjct: 11 NSVSVSGLASGGYMAAQLGVAYSDVFNVGFGVFAGGPYDCARNQYYTSCMYNGYPSITTP 70
Query: 618 EEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQ 676
+ + + + + N+ + + T D V P +L A +
Sbjct: 71 TANMKSWSGNQIASVANLGQRK------------IYMWTGSSDTTVGPNVMNQLKAQLG 117
|
| >d2gzsa1 c.69.1.38 (A:41-305) Enterobactin and salmochelin hydrolase IroE {Escherichia coli [TaxId: 562]} Length = 265 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: IroE-like domain: Enterobactin and salmochelin hydrolase IroE species: Escherichia coli [TaxId: 562]
Score = 38.8 bits (89), Expect = 0.001
Identities = 21/231 (9%), Positives = 46/231 (19%), Gaps = 11/231 (4%)
Query: 449 FHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMR 508
+H S DG+ ++ +P L G + + + L
Sbjct: 11 YHFSATSFDSVDGTRHYRVWTAVPNTTAPASGYPILYMLDGNAVMDRLDDELLKQ--LSE 68
Query: 509 HLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGG 568
V + + ++ D S S G R+L
Sbjct: 69 KTPPVIVAVGYQTNLPFDLNSRAYDYTPAAESRKTDLHSGRFSRKSGGSNNFRQLLETR- 127
Query: 569 SNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHAWVSDFGCSEEEEEFYWLIK 628
+ + Q ++ G + + + S
Sbjct: 128 ------IAPKVEQGLNIDRQRRGLWGHSYGGLFVLDSWLSSSYFRSYYSASPSLGRGYDA 181
Query: 629 YSPLHNVRRPWEQNPDKPFQYPST--LLLTADHDDRVVPLHSLKLLATMQY 677
P + + + V L ++
Sbjct: 182 LLSRVTAVEPLQFCTKHLAIMEGSATQGDNRETHAVGVLSKIHTTLTILKD 232
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 732 | |||
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 100.0 | |
| d1qfma2 | 280 | Prolyl oligopeptidase, C-terminal domain {Pig (Sus | 100.0 | |
| d2hu7a2 | 260 | Acylamino-acid-releasing enzyme, C-terminal donain | 100.0 | |
| d2bgra2 | 258 | Dipeptidyl peptidase IV/CD26, C-terminal domain {P | 100.0 | |
| d1xfda2 | 258 | Dipeptidyl aminopeptidase-like protein 6, DPP6, C- | 99.97 | |
| d1vlqa_ | 322 | Acetyl xylan esterase TM0077 {Thermotoga maritima | 99.92 | |
| d1l7aa_ | 318 | Cephalosporin C deacetylase {Bacillus subtilis [Ta | 99.91 | |
| d2jbwa1 | 360 | 2,6-dihydropseudooxynicotine hydrolase {Arthrobact | 99.89 | |
| d1lzla_ | 317 | Heroin esterase {Rhodococcus sp. [TaxId: 1831]} | 99.86 | |
| d1dina_ | 233 | Dienelactone hydrolase {Pseudomonas sp., B13 [TaxI | 99.86 | |
| d1jfra_ | 260 | Lipase {Streptomyces exfoliatus [TaxId: 1905]} | 99.84 | |
| d1jkma_ | 358 | Carboxylesterase {Bacillus subtilis, brefeldin A e | 99.84 | |
| d1jjia_ | 311 | Carboxylesterase {Archaeon Archaeoglobus fulgidus | 99.84 | |
| d1mpxa2 | 381 | Alpha-amino acid ester hydrolase {Xanthomonas citr | 99.84 | |
| d1ju3a2 | 347 | Bacterial cocaine esterase N-terminal domain {Rhod | 99.83 | |
| d2pbla1 | 261 | Uncharacterized protein TM1040_2492 {Silicibacter | 99.83 | |
| d2fuka1 | 218 | XC6422 protein {Xanthomonas campestris [TaxId: 339 | 99.82 | |
| d1thta_ | 302 | Myristoyl-ACP-specific thioesterase {Vibrio harvey | 99.82 | |
| d1u4na_ | 308 | Carboxylesterase {Alicyclobacillus acidocaldarius | 99.82 | |
| d1ufoa_ | 238 | Hypothetical protein TT1662 {Thermus thermophilus | 99.81 | |
| d1lnsa3 | 405 | X-Prolyl dipeptidyl aminopeptidase PepX, middle do | 99.8 | |
| d1sfra_ | 288 | Antigen 85a {Mycobacterium tuberculosis [TaxId: 17 | 99.8 | |
| d2h1ia1 | 202 | Carboxylesterase {Bacillus cereus [TaxId: 1396]} | 99.78 | |
| d2b9va2 | 385 | Alpha-amino acid ester hydrolase {Acetobacter past | 99.78 | |
| d2gzsa1 | 265 | Enterobactin and salmochelin hydrolase IroE {Esche | 99.75 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.74 | |
| d3c8da2 | 246 | Enterochelin esterase, catalytic domain {Shigella | 99.74 | |
| d1vkha_ | 263 | Putative serine hydrolase Ydr428c {Baker's yeast ( | 99.73 | |
| d1jjfa_ | 255 | Feruloyl esterase domain of the cellulosomal xylan | 99.73 | |
| d2i3da1 | 218 | Hypothetical protein Atu1826 {Agrobacterium tumefa | 99.72 | |
| d1fj2a_ | 229 | Acyl protein thioesterase 1 {Human (Homo sapiens) | 99.72 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.71 | |
| d3b5ea1 | 209 | Uncharacterized protein Mll8374 {Mesorhizobium lot | 99.71 | |
| d1k8qa_ | 377 | Gastric lipase {Dog (Canis familiaris) [TaxId: 961 | 99.67 | |
| d1a8qa_ | 274 | Bromoperoxidase A1 {Streptomyces aureofaciens [Tax | 99.67 | |
| d2r8ba1 | 203 | Uncharacterized protein Atu2452 {Agrobacterium tum | 99.66 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.65 | |
| d1q0ra_ | 297 | Aclacinomycin methylesterase RdmC {Streptomyces pu | 99.65 | |
| d1tqha_ | 242 | Carboxylesterase Est {Bacillus stearothermophilus | 99.64 | |
| d1r88a_ | 267 | Antigen pt51/mpb51 {Mycobacterium tuberculosis [Ta | 99.64 | |
| d1uk8a_ | 271 | Meta-cleavage product hydrolase CumD {Pseudomonas | 99.63 | |
| d1dqza_ | 280 | Antigen 85c {Mycobacterium tuberculosis [TaxId: 17 | 99.62 | |
| d1j1ia_ | 268 | Meta cleavage compound hydrolase CarC {Janthinobac | 99.62 | |
| d1imja_ | 208 | Ccg1/TafII250-interacting factor B (Cib) {Human (H | 99.62 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 99.61 | |
| d1mtza_ | 290 | Tricorn interacting factor F1 {Archaeon Thermoplas | 99.61 | |
| d1auoa_ | 218 | Carboxylesterase {Pseudomonas fluorescens [TaxId: | 99.61 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.6 | |
| d1zd3a2 | 322 | Mammalian epoxide hydrolase, C-terminal domain {Hu | 99.6 | |
| d1uxoa_ | 186 | Hypothetical protein YdeN {Bacillus subtilis [TaxI | 99.59 | |
| d1wb4a1 | 273 | Feruloyl esterase domain of the cellulosomal xylan | 99.59 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 99.59 | |
| d1a8sa_ | 273 | Chloroperoxidase F {Pseudomonas fluorescens [TaxId | 99.59 | |
| d1c4xa_ | 281 | 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolas | 99.59 | |
| d1va4a_ | 271 | Arylesterase {Pseudomonas fluorescens [TaxId: 294] | 99.59 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 99.58 | |
| d1azwa_ | 313 | Proline iminopeptidase {Xanthomonas campestris, pv | 99.58 | |
| d1a88a_ | 275 | Chloroperoxidase L {Streptomyces lividans [TaxId: | 99.58 | |
| d2rhwa1 | 283 | 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolas | 99.58 | |
| d1b6ga_ | 310 | Haloalkane dehalogenase {Xanthobacter autotrophicu | 99.53 | |
| d1pv1a_ | 299 | Hypothetical esterase YJL068C {Baker's yeast (Sacc | 99.52 | |
| d1ehya_ | 293 | Bacterial epoxide hydrolase {Agrobacterium radioba | 99.52 | |
| d1brta_ | 277 | Bromoperoxidase A2 {Streptomyces aureofaciens [Tax | 99.51 | |
| d1xkla_ | 258 | Salicylic acid-binding protein 2 (SABP2) {Common t | 99.5 | |
| d1bn7a_ | 291 | Haloalkane dehalogenase {Rhodococcus sp. [TaxId: 1 | 99.5 | |
| d1hkha_ | 279 | Gamma-lactamase {Aureobacterium sp. [TaxId: 51671] | 99.48 | |
| d1wm1a_ | 313 | Proline aminopeptidase {Serratia marcescens [TaxId | 99.46 | |
| d1m33a_ | 256 | Biotin biosynthesis protein BioH {Escherichia coli | 99.46 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 99.44 | |
| d3c70a1 | 256 | Hydroxynitrile lyase {Rubber tree (Hevea brasilien | 99.43 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.4 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.38 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.35 | |
| d2d81a1 | 318 | Polyhydroxybutyrate depolymerase {Penicillium funi | 99.35 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.32 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.31 | |
| d1qlwa_ | 318 | A novel bacterial esterase {Alcaligenes sp. [TaxId | 99.3 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 99.29 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.26 | |
| d1r3da_ | 264 | Hypothetical protein VC1974 {Vibrio cholerae [TaxI | 99.25 | |
| d1mj5a_ | 298 | Haloalkane dehalogenase {Sphingomonas paucimobilis | 99.22 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 99.21 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 99.2 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.2 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 99.18 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.15 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.1 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.09 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 99.09 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.08 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.08 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 99.06 | |
| d1qo7a_ | 394 | Bacterial epoxide hydrolase {Aspergillus niger [Ta | 99.06 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.02 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 98.98 | |
| d2b61a1 | 357 | Homoserine O-acetyltransferase {Haemophilus influe | 98.95 | |
| d1pjaa_ | 268 | Palmitoyl protein thioesterase 2 {Human (Homo sapi | 98.95 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 98.95 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 98.94 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 98.93 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 98.91 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 98.91 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 98.9 | |
| d1ispa_ | 179 | Lipase A {Bacillus subtilis [TaxId: 1423]} | 98.89 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 98.89 | |
| d1llfa_ | 534 | Type-B carboxylesterase/lipase {Candida cylindrace | 98.86 | |
| d2pl5a1 | 362 | Homoserine O-acetyltransferase {Leptospira interro | 98.86 | |
| d1ukca_ | 517 | Esterase EstA {Aspergillus niger [TaxId: 5061]} | 98.84 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 98.8 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 98.78 | |
| d2vata1 | 376 | Acetyl-CoA:deacetylcephalosporin C acetyltransfera | 98.76 | |
| d1qe3a_ | 483 | Thermophilic para-nitrobenzyl esterase (PNB estera | 98.74 | |
| d1tcaa_ | 317 | Triacylglycerol lipase {Yeast (Candida antarctica) | 98.74 | |
| d1jmkc_ | 230 | Surfactin synthetase, SrfA {Bacillus subtilis [Tax | 98.71 | |
| d2h7ca1 | 532 | Mammalian carboxylesterase (liver carboxylesterase | 98.69 | |
| d1thga_ | 544 | Type-B carboxylesterase/lipase {Fungus (Geotrichum | 98.68 | |
| d1cvla_ | 319 | Lipase {Chromobacterium viscosum [TaxId: 42739]} | 98.65 | |
| d2ha2a1 | 542 | Acetylcholinesterase {Mouse (Mus musculus) [TaxId: | 98.64 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.63 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 98.6 | |
| d1ea5a_ | 532 | Acetylcholinesterase {Pacific electric ray (Torped | 98.6 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.58 | |
| d1p0ia_ | 526 | Butyryl cholinesterase {Human (Homo sapiens) [TaxI | 98.58 | |
| d1dx4a_ | 571 | Acetylcholinesterase {Fruit fly (Drosophila melano | 98.55 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.54 | |
| d2bcea_ | 579 | Bile-salt activated lipase (cholesterol esterase) | 98.52 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 98.52 | |
| d1ex9a_ | 285 | Lipase {Pseudomonas aeruginosa [TaxId: 287]} | 98.52 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 98.51 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 98.5 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 98.49 | |
| d2dsta1 | 122 | Hypothetical protein TTHA1544 {Thermus thermophilu | 98.48 | |
| d2h7xa1 | 283 | Picromycin polyketide synthase {Streptomyces venez | 98.46 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 98.46 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.43 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 98.38 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 98.34 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 98.31 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 98.31 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 98.29 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 98.17 | |
| d1xkta_ | 286 | Fatty acid synthase {Human (Homo sapiens) [TaxId: | 98.14 | |
| d2hu7a1 | 313 | Acylamino-acid-releasing enzyme, N-terminal donain | 98.08 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 97.98 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 97.93 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 97.83 | |
| d1ei9a_ | 279 | Palmitoyl protein thioesterase 1 {Cow (Bos taurus) | 97.79 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 97.77 | |
| d1rp1a2 | 337 | Pancreatic lipase, N-terminal domain {Dog (Canis f | 97.74 | |
| d1bu8a2 | 338 | Pancreatic lipase, N-terminal domain {Rat (Rattus | 97.59 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 97.58 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 97.57 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 97.56 | |
| d1mo2a_ | 255 | Erythromycin polyketide synthase {Saccharopolyspor | 97.55 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 97.45 | |
| d2hu7a1 | 313 | Acylamino-acid-releasing enzyme, N-terminal donain | 97.38 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 97.36 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 97.36 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 97.1 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 97.05 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 96.97 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 96.97 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 96.83 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 96.77 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 96.72 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 96.72 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 96.57 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 96.27 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 96.24 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 95.75 | |
| g1wht.1 | 409 | Serine carboxypeptidase II {Wheat (Triticum vulgar | 95.56 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 95.22 | |
| d1ivya_ | 452 | Human 'protective protein', HPP {Human (Homo sapie | 94.99 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 94.87 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 94.6 | |
| d1ku0a_ | 388 | Lipase L1 {Bacillus stearothermophilus [TaxId: 142 | 93.48 | |
| d1wpxa1 | 421 | Serine carboxypeptidase II {Baker's yeast (Sacchar | 92.44 | |
| g1gxs.1 | 425 | Hydroxynitrile lyase {Sorghum (Sorghum bicolor) [T | 90.81 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 90.1 | |
| d1ac5a_ | 483 | Serine carboxypeptidase II {Baker's yeast (Sacchar | 89.93 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 86.29 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 85.42 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 83.29 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 82.2 | |
| d1uwca_ | 261 | Feruloyl esterase A {Aspergillus niger [TaxId: 506 | 80.69 | |
| d1lgya_ | 265 | Triacylglycerol lipase {Rhizopus niveus [TaxId: 48 | 80.51 |
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=100.00 E-value=1.2e-55 Score=479.00 Aligned_cols=422 Identities=49% Similarity=0.926 Sum_probs=355.2
Q ss_pred CCCCCcccc-cCceeeeecCccccCCCccccCCCCHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhcCCCCCCCcEE
Q 004766 10 SLQYPVARR-DESVVDDYHGVKIVDPYRWLEDPDAEEVKDFVQKQVELTDSVLKNCDVRDKLREKITKLFDSPRYDAPFK 88 (732)
Q Consensus 10 ~~~~P~~~~-~~~~~~~~~g~~~~D~y~wLed~~~~~~~~~l~~qn~~t~~~l~~~~~~~~l~~~~~~~~~~~~~~~p~~ 88 (732)
.++||.++| +++ ++++||+++.|||+||||.++|++++||++||+||+++|+++|+++.+.++++++...++.++|.+
T Consensus 3 ~~~yP~~~~~~~~-~~~~hG~~~~DpY~WLed~~~~~v~~wl~~eN~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~ 81 (430)
T d1qfma1 3 SFQYPDVYRDETA-IQDYHGHKVCDPYAWLEDPDSEQTKAFVEAQNKITVPFLEQCPIRGLYKERMTELYDYPKYSCHFK 81 (430)
T ss_dssp CSCCCCCCCCTTC-EEEETTEEEECTTGGGGCTTSHHHHHHHHHHHHHHHHHHHSSTHHHHHHHHHHHHTCSCEECCCEE
T ss_pred CCCCCCCcCCCCe-eeccCCCEEeeCchhhcCCCCHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhcCCceeeeEE
Confidence 356766655 554 899999999999999999999999999999999999999999999999999999998899999999
Q ss_pred eCCEEEEEEEcCCCCeeEEEEEeCCCCCceEEeCCCCcCCCCCEEEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCC
Q 004766 89 RGNKYFYFHNTGLQPQSVLYVQDSLDAKAKVLLDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQ 168 (732)
Q Consensus 89 ~g~~~~~~~~~~~~~~~~l~~r~~~~~~~~~l~D~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g 168 (732)
+|+++||.++.+.+.+..+|++...++++++|||+|++++++.+.+.++++||||++|||+.+.+|+|.++|+++|+++|
T Consensus 82 ~g~~y~~~~~~~~~~~~~~~~~~~~~~~~evllD~n~la~~~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg 161 (430)
T d1qfma1 82 KGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGA 161 (430)
T ss_dssp ETTEEEEEEECSSCSSCEEEEESSSSSCCEEEECGGGGCSSSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTT
T ss_pred eCCEEEEEEecCCCccceEEeccccCCCeeeecchhhhcccccceecceEecCCCCEEEEEeccccCchheeEEeccCcc
Confidence 99999999988888888899988777889999999999988889999999999999999999999999999999999999
Q ss_pred ceecccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEe
Q 004766 169 IVEADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSG 248 (732)
Q Consensus 169 ~~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~ 248 (732)
+.++..+.++.+++++|++|++.|+|++.+.... ..++..++..++.+||+|++|+++.++++++++.+++.+..++
T Consensus 162 ~~~~~~i~~~~~~~~~W~~D~~~~~Y~~~~~~~~---~~~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~ 238 (430)
T d1qfma1 162 KELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDG---KSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGA 238 (430)
T ss_dssp EEEEEEEEEECSCCEEECTTSSEEEEEECCCCSS---CCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEE
T ss_pred eecccccccccccceEEcCCCCEEEEEEeccccC---cccccccccCCcceEEEEECCCCccccccccccccCCceEEee
Confidence 9888777777668899999999999999765431 1223445678899999999999999999999988877777788
Q ss_pred EEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCCCCcEEeeecccceEEEEEecCCeEEEEeCCCCCCce
Q 004766 249 HVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYK 328 (732)
Q Consensus 249 ~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~ 328 (732)
..|+||+++++....+.+..+.+|++++........ ...++.++.......+..+.++|+.||+++|.++++++
T Consensus 239 ~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tn~~a~~~~ 312 (430)
T d1qfma1 239 ELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGIT------GILKWVKLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYR 312 (430)
T ss_dssp EECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSC------SSCCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCE
T ss_pred eccCCcceeeEEeeccCCccEEEEEeeCCCcccccc------cccceeEeecccccceEEEecCCceeecccCcccccce
Confidence 999999999988877766567899999875322110 12235566666665666667789999999999999999
Q ss_pred EEEEeCCCCC--CceEeccCCCCCcee-EEEEecCCEEEEEEecCCeeEEEEEeCCCCceeeeccc-ccceeeEeecccC
Q 004766 329 IIRVDLKEPN--DWFEVIPEAERDVLE-SATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPI-EIGSVNAISARRE 404 (732)
Q Consensus 329 l~~~d~~~~~--~~~~l~~~~~~~~l~-~~~~~~~~~l~~~~~~~g~~~l~~~d~~~g~~~~~l~~-~~g~v~~~~~s~d 404 (732)
|+.++++.+. .|++++++.+...+. .+.+.+ ++|++..++++.++|+++++++++. ..+.+ +.+++..++.+++
T Consensus 313 L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~-~~lvl~~~~~~~~~l~v~~~~~~~~-~~~~~~~~~sv~~~~~~~~ 390 (430)
T d1qfma1 313 LINIDFTDPEESKWKVLVPEHEKDVLEWVACVRS-NFLVLCYLHDVKNTLQLHDLATGAL-LKIFPLEVGSVVGYSGQKK 390 (430)
T ss_dssp EEEEETTBCCGGGCEEEECCCSSCEEEEEEEETT-TEEEEEEEETTEEEEEEEETTTCCE-EEEECCCSSEEEEEECCTT
T ss_pred eEEecCCCCccccceEEecccCcceeeeEEEEEC-CEEEEEEEcCCEeEEEEEECCCCcE-EEecCCCCceEeeccCCCC
Confidence 9999998764 589999876544444 344445 8999999999999999999987765 45544 4778878888888
Q ss_pred CcEEEEEEecCCCCceEEEEECCCCCCceEEEEeecCCC
Q 004766 405 DSVVFISFTSFLIPGIVYQCNLKTETPEMKIFRETIIPG 443 (732)
Q Consensus 405 ~~~l~~~~ss~~~p~~~y~~d~~~~~~~~~~l~~~~~~~ 443 (732)
++.++|+++|+++|+++|.||+.+++.+.++++++++++
T Consensus 391 ~~~~~~~~ss~~tP~~~y~~Dl~t~~~~~~~~k~~~v~G 429 (430)
T d1qfma1 391 DTEIFYQFTSFLSPGIIYHCDLTKEELEPRVFREVTVKG 429 (430)
T ss_dssp CSEEEEEEECSSCCCEEEEEETTSSSCCCEEEEECCCTT
T ss_pred CCEEEEEEcCCCCCCeEEEEECCCCCcceeeEeccCCCC
Confidence 899999999999999999999999875567888876664
|
| >d1qfma2 c.69.1.4 (A:431-710) Prolyl oligopeptidase, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Prolyl oligopeptidase, C-terminal domain domain: Prolyl oligopeptidase, C-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=100.00 E-value=2.5e-33 Score=284.82 Aligned_cols=278 Identities=65% Similarity=1.202 Sum_probs=231.7
Q ss_pred CCCceEEEEEEEccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCC
Q 004766 446 RSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEY 525 (732)
Q Consensus 446 ~~~~~~~~~~~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~ 525 (732)
+++|.+|+|+|++.|| ++|+++|++|+++++++++|+||++|||++.+..+.+......++...|++++..+.+++..+
T Consensus 2 ~~~y~~e~v~~~s~DG-~~i~~~l~~P~~~~~~~~~P~iv~~HGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (280)
T d1qfma2 2 ASDYQTVQIFYPSKDG-TKIPMFIVHKKGIKLDGSHPAFLYGYGGFNISITPNYSVSRLIFVRHMGGVLAVANIRGGGEY 80 (280)
T ss_dssp GGGEEEEEEEEECTTS-CEEEEEEEEETTCCCSSCSCEEEECCCCTTCCCCCCCCHHHHHHHHHHCCEEEEECCTTSSTT
T ss_pred cccCEEEEEEEECCCC-CEEEEEEEEcCCCCCCCCeEEEEEECCCCcccCCCCcchhhhhhhcccceeeecccccccccc
Confidence 4568889999999999 999999999999888899999999999999988888887777777778999999999999888
Q ss_pred chhHHhcccccCCccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCcccccccccCC
Q 004766 526 GEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFT 605 (732)
Q Consensus 526 g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~ 605 (732)
+..+.............++...++.+...+...+..+++++|+|.||+++..++...+++++|+++.+++.|+.......
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (280)
T d1qfma2 81 GETWHKGGILANKQNCFDDFQCAAEYLIKEGYTSPKRLTINGGSNGGLLVATCANQRPDLFGCVIAQVGVMDMLKFHKYT 160 (280)
T ss_dssp HHHHHHTTSGGGTHHHHHHHHHHHHHHHHTTSCCGGGEEEEEETHHHHHHHHHHHHCGGGCSEEEEESCCCCTTTGGGST
T ss_pred chhhhhcccccccccccchhhhhhhhhhhhcccccccccccccccccchhhhhhhcccchhhheeeeccccchhhhcccc
Confidence 88888887777777888888999999999999999999999999999999999999999999999999999988776544
Q ss_pred CCCccccccCCCCCHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhcCCCCC
Q 004766 606 IGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLEN 685 (732)
Q Consensus 606 ~~~~~~~~~g~p~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~ 685 (732)
....+.........++........+|+.++... .......||+||+||++|++||+.|+.+++++|+++..+ .
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~----~~~~~~~pP~LiihG~~D~~Vp~~~s~~l~~aL~~~g~~---~ 233 (280)
T d1qfma2 161 IGHAWTTDYGCSDSKQHFEWLIKYSPLHNVKLP----EADDIQYPSMLLLTADHDDRVVPLHSLKFIATLQYIVGR---S 233 (280)
T ss_dssp TGGGGHHHHCCTTSHHHHHHHHHHCGGGCCCCC----SSTTCCCCEEEEEEETTCCSSCTHHHHHHHHHHHHHTTT---S
T ss_pred ccccceecccCCCcccccccccccccccccchh----hhcccCCCceEEeecccCCCCCHHHHHHHHHHHHHhhhh---h
Confidence 443333334444445555666777777665542 001125789999999999999999999999999876211 1
Q ss_pred CCCCCCEEEEEeCCCCCCCCCchHHHHHHHHHHHHHHHHHhCCCcC
Q 004766 686 SPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLGASWV 731 (732)
Q Consensus 686 ~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~~~~ 731 (732)
+..|+|++|++++++||++..+..+.++.++++++||.++|+.+|.
T Consensus 234 ~~~~~~~~l~~~~~~gHgf~~~~~~~~~~~~~~~~fl~k~L~~~~~ 279 (280)
T d1qfma2 234 RKQNNPLLIHVDTKAGHGAGKPTAKVIEEVSDMFAFIARCLNIDWI 279 (280)
T ss_dssp TTCCSCEEEEEESSCCSSTTCCHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred hcCCCcEEEEEeCcCCCCCCCcHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 2348999999999999999888777788999999999999999875
|
| >d2hu7a2 c.69.1.33 (A:322-581) Acylamino-acid-releasing enzyme, C-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acylamino-acid-releasing enzyme, C-terminal donain domain: Acylamino-acid-releasing enzyme, C-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=100.00 E-value=1e-33 Score=284.64 Aligned_cols=250 Identities=20% Similarity=0.254 Sum_probs=209.3
Q ss_pred ceEEEEEEEccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchh
Q 004766 449 FHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEE 528 (732)
Q Consensus 449 ~~~~~~~~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~ 528 (732)
...+.|+++|.|| ++|+++++.|++. .++.|+||++|||++.+....|.... ..|+++||+|+++|+||.+++|..
T Consensus 10 ~~~~~v~~~s~dG-~~i~~~l~~p~~~--~~~~Pviv~~HGG~~~~~~~~~~~~~-~~la~~G~~v~~~d~r~~~~~g~~ 85 (260)
T d2hu7a2 10 AGSRLVWVESFDG-SRVPTYVLESGRA--PTPGPTVVLVHGGPFAEDSDSWDTFA-ASLAAAGFHVVMPNYRGSTGYGEE 85 (260)
T ss_dssp EEEEEEEEECTTS-CEEEEEEEEETTS--CSSEEEEEEECSSSSCCCCSSCCHHH-HHHHHHTCEEEEECCTTCSSSCHH
T ss_pred CceEEEEEECCCC-CEEEEEEEeCCCC--CCCceEEEEECCCCccCCCccccHHH-HHHHhhccccccceeeeccccccc
Confidence 4678899999999 9999999999874 47889999999998877777777644 445559999999999999999999
Q ss_pred HHhcccccCCccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCcccccccccCCCCC
Q 004766 529 WHKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGH 608 (732)
Q Consensus 529 ~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~ 608 (732)
|............++|+.++++||.+++ ++++++|+|+|+||++++.++..+|+.|+|+++.+|+.++......+..
T Consensus 86 ~~~~~~~~~~~~~~~D~~~~~~~l~~~~--~~~~~~i~g~s~gg~~~~~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~- 162 (260)
T d2hu7a2 86 WRLKIIGDPCGGELEDVSAAARWARESG--LASELYIMGYSYGGYMTLCALTMKPGLFKAGVAGASVVDWEEMYELSDA- 162 (260)
T ss_dssp HHHTTTTCTTTHHHHHHHHHHHHHHHTT--CEEEEEEEEETHHHHHHHHHHHHSTTSSSEEEEESCCCCHHHHHHTCCH-
T ss_pred cccccccccchhhhhhhccccccccccc--ccceeeccccccccccccchhccCCcccccccccccchhhhhhhccccc-
Confidence 9999888888888999999999999985 5789999999999999999999999999999999999988665442221
Q ss_pred ccccccCCCCCHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhcCCCCCCCC
Q 004766 609 AWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQ 688 (732)
Q Consensus 609 ~~~~~~g~p~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~ 688 (732)
+...+.........+.+...+|+.++++ +.+|+||+||++|.+||+.++.+++++|++.
T Consensus 163 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~P~liihG~~D~~vp~~~~~~~~~~l~~~---------- 221 (260)
T d2hu7a2 163 -AFRNFIEQLTGGSREIMRSRSPINHVDR----------IKEPLALIHPQNDSRTPLKPLLRLMGELLAR---------- 221 (260)
T ss_dssp -HHHHHHHHHHCSCHHHHHHTCGGGCGGG----------CCSCEEEEEETTCSSSCSHHHHHHHHHHHHT----------
T ss_pred -ccccccccccccccccccccchhhcccc----------cCCCceeeecccCceecHHHHHHHHHHHHHC----------
Confidence 1111111000011345678899999987 7899999999999999999999999999998
Q ss_pred CCCEEEEEeCCCCCCCCCchHHHHHHHHHHHHHHHHHhC
Q 004766 689 TNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLG 727 (732)
Q Consensus 689 ~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 727 (732)
++++++++||++||++....+. .+.+..+++||.+||.
T Consensus 222 ~~~~~~~~~~g~~H~~~~~e~~-~~~~~~~~~fl~~hl~ 259 (260)
T d2hu7a2 222 GKTFEAHIIPDAGHAINTMEDA-VKILLPAVFFLATQRE 259 (260)
T ss_dssp TCCEEEEEETTCCSSCCBHHHH-HHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECcCCCCCCChHhH-HHHHHHHHHHHHHHhc
Confidence 9999999999999999876654 6888899999999974
|
| >d2bgra2 c.69.1.24 (A:509-766) Dipeptidyl peptidase IV/CD26, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: DPP6 catalytic domain-like domain: Dipeptidyl peptidase IV/CD26, C-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=100.00 E-value=1.2e-32 Score=276.62 Aligned_cols=253 Identities=16% Similarity=0.163 Sum_probs=210.0
Q ss_pred EEEEEEEccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccC-CCCcChh-HHHHHHhcCcEEEEEcccCCCCCchh
Q 004766 451 VHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISV-TPSFSVS-RTILMRHLGAVFCIANIRGGGEYGEE 528 (732)
Q Consensus 451 ~~~~~~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~-~~~~~~~-~~~~l~~~G~~v~~~~~rG~g~~g~~ 528 (732)
.|++.+...|| +++.+.|+.|+++++++++|+||++|||++... ...+... ...+++++||+|+.+|+||++++|..
T Consensus 3 ~~~~~~~~~~~-~~~~~~l~lP~~~~~~kk~P~iv~~HGGp~~~~~~~~~~~~~~~~~~a~~g~~V~~~d~rg~~~~~~~ 81 (258)
T d2bgra2 3 SKKLDFIILNE-TKFWYQMILPPHFDKSKKYPLLLDVYAGPCSQKADTVFRLNWATYLASTENIIVASFDGRGSGYQGDK 81 (258)
T ss_dssp EEEEEEEEETT-EEEEEEEEECTTCCTTSCEEEEEECCCCTTCCCCCCCCCCSHHHHHHHTTCCEEEEECCTTCSSSCHH
T ss_pred ceeEEEEEeCC-cEEEEEEEECCCcCCCCCeeEEEEEcCCCCcccCCCccCcCHHHHHHhcCCcEEEeecccccCCcchH
Confidence 57888999999 999999999999888889999999999854432 2233322 24566779999999999999999999
Q ss_pred HHhcccccCCccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCcccccccccCCCCC
Q 004766 529 WHKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGH 608 (732)
Q Consensus 529 ~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~ 608 (732)
|........+....+|+.+++++++++..+|+++|+++|+|+||.++++++..+|+++.++++..+..........
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~i~i~G~S~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 157 (258)
T d2bgra2 82 IMHAINRRLGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWEYYDSV---- 157 (258)
T ss_dssp HHGGGTTCTTSHHHHHHHHHHHHHTTSSSEEEEEEEEEEETHHHHHHHHHHTTTCSCCSEEEEESCCCCGGGSBHH----
T ss_pred HHHhhhhhhhhHHHHHHHHHHHHhhhhcccccccccccCcchhhcccccccccCCCcceEEEEeeccccccccccc----
Confidence 9999888888888999999999999999999999999999999999999999999999999998887765433221
Q ss_pred ccccccCCCCCHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhcCCCCCCCC
Q 004766 609 AWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQ 688 (732)
Q Consensus 609 ~~~~~~g~p~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~ 688 (732)
.+...++.+......+.+..++|+..+.+. ..+|+|++||++|++||+.++.+++++|+++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~P~li~hG~~D~~Vp~~~s~~~~~~l~~~---------- 218 (258)
T d2bgra2 158 YTERYMGLPTPEDNLDHYRNSTVMSRAENF---------KQVEYLLIHGTADDNVHFQQSAQISKALVDV---------- 218 (258)
T ss_dssp HHHHHHCCCSTTTTHHHHHHSCSGGGGGGG---------GGSEEEEEEETTCSSSCTHHHHHHHHHHHHH----------
T ss_pred ccchhcccccchhhHHHhhccccccccccc---------ccCChheeeecCCCcccHHHHHHHHHHHHHC----------
Confidence 111233444333334557788999888773 4589999999999999999999999999998
Q ss_pred CCCEEEEEeCCCCCCCCCchHHHHHHHHHHHHHHHHHhCC
Q 004766 689 TNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLGA 728 (732)
Q Consensus 689 ~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~ 728 (732)
|+++++++||+++|++...... .+.+..+.+||.++|..
T Consensus 219 g~~~~~~~~~g~~H~~~~~~~~-~~~~~~i~~fl~~~l~~ 257 (258)
T d2bgra2 219 GVDFQAMWYTDEDHGIASSTAH-QHIYTHMSHFIKQCFSL 257 (258)
T ss_dssp TCCCEEEEETTCCTTCCSHHHH-HHHHHHHHHHHHHHTTC
T ss_pred CCCEEEEEECCCCCCCCCCccH-HHHHHHHHHHHHHHhcC
Confidence 9999999999999998776554 67788999999999874
|
| >d1xfda2 c.69.1.24 (A:592-849) Dipeptidyl aminopeptidase-like protein 6, DPP6, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: DPP6 catalytic domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=1.1e-32 Score=276.82 Aligned_cols=242 Identities=17% Similarity=0.165 Sum_probs=191.7
Q ss_pred cCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccC-CCCcChh-HHHHHHhcCcEEEEEcccCCCCCchhHHhccccc
Q 004766 459 KDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISV-TPSFSVS-RTILMRHLGAVFCIANIRGGGEYGEEWHKGGALA 536 (732)
Q Consensus 459 ~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~-~~~~~~~-~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~ 536 (732)
.|| ++|+++|+.|++++.++++|+||++|||++... ...|... ...+|+++||+|+++|+||++++|..|.......
T Consensus 10 ~dg-~~l~~~l~~P~~~~~~~k~Pviv~~HGGp~~~~~~~~~~~~~~~~~la~~G~~vv~~d~rGs~~~g~~~~~~~~~~ 88 (258)
T d1xfda2 10 IDD-YNLPMQILKPATFTDTTHYPLLLVVDGTPGSQSVAEKFEVSWETVMVSSHGAVVVKCDGRGSGFQGTKLLHEVRRR 88 (258)
T ss_dssp ETT-EEECCBEEBCSSCCSSSCEEEEEECCCCTTCCCCCCCCCCSHHHHHHHTTCCEEECCCCTTCSSSHHHHHHTTTTC
T ss_pred eCC-eEEEEEEEECCCcCCCCceeEEEEEcCCccccCcCCCcCcchHHHHHhcCCcEEEEeccccccccchhHhhhhhcc
Confidence 399 999999999999877888999999999865432 3444432 2456787999999999999999999999988888
Q ss_pred CCccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCC----eeeEEEEcCCcccccccccCCCCCcccc
Q 004766 537 KKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPD----LFGCALAHVGVMDMLRYHKFTIGHAWVS 612 (732)
Q Consensus 537 ~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~----~f~a~v~~~p~~d~~~~~~~~~~~~~~~ 612 (732)
.+....+|+++++++|+++..+|++||+++|+|+||++++.++...++ .|++.+...|+..+..... .....
T Consensus 89 ~g~~~~~d~~~~i~~l~~~~~id~~ri~v~G~S~GG~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 164 (258)
T d1xfda2 89 LGLLEEKDQMEAVRTMLKEQYIDRTRVAVFGKDYGGYLSTYILPAKGENQGQTFTCGSALSPITDFKLYAS----AFSER 164 (258)
T ss_dssp TTTHHHHHHHHHHHHHHSSSSEEEEEEEEEEETHHHHHHHHCCCCSSSTTCCCCSEEEEESCCCCTTSSBH----HHHHH
T ss_pred chhHHHHHHHHhhhhhcccccccccceeccccCchHHHHHHHHhcCCcccceeeeeeeccccceeeecccc----ccccc
Confidence 888889999999999999999999999999999999999998876554 5777777777655432211 00111
Q ss_pred ccCCC-CCHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhcCCCCCCCCCCC
Q 004766 613 DFGCS-EEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNP 691 (732)
Q Consensus 613 ~~g~p-~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 691 (732)
.++.+ .+++ .+...+|..++... ..+|+||+||++|.+||+.++.+++++|++. +++
T Consensus 165 ~~~~~~~~~~---~~~~~s~~~~~~~~---------~~~p~Li~hG~~D~~vp~~~s~~~~~~l~~~----------~~~ 222 (258)
T d1xfda2 165 YLGLHGLDNR---AYEMTKVAHRVSAL---------EEQQFLIIHPTADEKIHFQHTAELITQLIRG----------KAN 222 (258)
T ss_dssp HHCCCSSCCS---STTTTCTHHHHTSC---------CSCEEEEEEETTCSSSCHHHHHHHHHHHHHT----------TCC
T ss_pred cccccccchH---Hhhccchhhhhhhh---------hcccccccccCCCCCcCHHHHHHHHHHHHHC----------CCC
Confidence 12222 1111 12345666666653 5789999999999999999999999999998 999
Q ss_pred EEEEEeCCCCCCCCCchHHHHHHHHHHHHHHHHHhCC
Q 004766 692 IIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLGA 728 (732)
Q Consensus 692 ~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~ 728 (732)
++++++|+++|++..... ....+..+++||.++|++
T Consensus 223 ~~~~~~p~~~H~~~~~~~-~~~~~~~~~~f~~~~~~~ 258 (258)
T d1xfda2 223 YSLQIYPDESHYFTSSSL-KQHLYRSIINFFVECFRI 258 (258)
T ss_dssp CEEEEETTCCSSCCCHHH-HHHHHHHHHHHHTTTTCC
T ss_pred EEEEEECCCCCCCCCCcC-HHHHHHHHHHHHHHhhCC
Confidence 999999999999876655 367778999999998864
|
| >d1vlqa_ c.69.1.25 (A:) Acetyl xylan esterase TM0077 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetyl xylan esterase-like domain: Acetyl xylan esterase TM0077 species: Thermotoga maritima [TaxId: 2336]
Probab=99.92 E-value=1.1e-24 Score=225.59 Aligned_cols=246 Identities=18% Similarity=0.170 Sum_probs=176.9
Q ss_pred CCCceEEEEEEEccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCC
Q 004766 446 RSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEY 525 (732)
Q Consensus 446 ~~~~~~~~~~~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~ 525 (732)
.+.+.++.++|++.|| .+|+++++.|++. .++.|+||++||+.+....+ .....+++ +||+|+++|+||.|..
T Consensus 50 ~~~~~~~~v~~~s~dG-~~l~~~l~~P~~~--~~~~P~Vv~~hG~~~~~~~~---~~~~~~a~-~G~~v~~~D~rG~G~s 122 (322)
T d1vlqa_ 50 LKTVEAYDVTFSGYRG-QRIKGWLLVPKLE--EEKLPCVVQYIGYNGGRGFP---HDWLFWPS-MGYICFVMDTRGQGSG 122 (322)
T ss_dssp CSSEEEEEEEEECGGG-CEEEEEEEEECCS--CSSEEEEEECCCTTCCCCCG---GGGCHHHH-TTCEEEEECCTTCCCS
T ss_pred CCCeEEEEEEEECCCC-cEEEEEEEeccCC--CCCccEEEEecCCCCCcCcH---HHHHHHHh-CCCEEEEeeccccCCC
Confidence 3456788999999999 9999999999874 47899999999976654322 22334444 9999999999999876
Q ss_pred chhHHhcccccC---------------------CccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCC
Q 004766 526 GEEWHKGGALAK---------------------KQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPD 584 (732)
Q Consensus 526 g~~~~~~~~~~~---------------------~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~ 584 (732)
+........... ....+.|.+++++++..+..+|++|++++|+|+||++++.++...|
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~a~~~~~~~~~~d~~ri~~~G~S~GG~~a~~~~~~~~- 201 (322)
T d1vlqa_ 123 WLKGDTPDYPEGPVDPQYPGFMTRGILDPRTYYYRRVFTDAVRAVEAAASFPQVDQERIVIAGGSQGGGIALAVSALSK- 201 (322)
T ss_dssp SSCCCCCBCCSSSBCCCCSSSTTTTTTCTTTCHHHHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHHHHCS-
T ss_pred CCCccccccccccccccccchhhhchhhhhhhhhHHHHHHHHHHHHHHHhcCCcCchhccccccccchHHHHHHHhcCC-
Confidence 554322111110 0123689999999999999999999999999999999999888855
Q ss_pred eeeEEEEcCCcccccccc-cCCCCCcccc--c-c-CCC-CCHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEeeC
Q 004766 585 LFGCALAHVGVMDMLRYH-KFTIGHAWVS--D-F-GCS-EEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTAD 658 (732)
Q Consensus 585 ~f~a~v~~~p~~d~~~~~-~~~~~~~~~~--~-~-g~p-~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~ 658 (732)
.|+++|+.+|........ .......+.. . + ..+ ..+...+.+..+||..++.+ +++|+||+||.
T Consensus 202 ~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~~----------i~~P~Lv~~G~ 271 (322)
T d1vlqa_ 202 KAKALLCDVPFLCHFRRAVQLVDTHPYAEITNFLKTHRDKEEIVFRTLSYFDGVNFAAR----------AKIPALFSVGL 271 (322)
T ss_dssp SCCEEEEESCCSCCHHHHHHHCCCTTHHHHHHHHHHCTTCHHHHHHHHHTTCHHHHHTT----------CCSCEEEEEET
T ss_pred CccEEEEeCCccccHHHHHhhccccchhhHHhhhhcCcchhhhHHHHhhhhhHHHHHhc----------CCCCEEEEEeC
Confidence 688888888866543222 1111111110 0 1 112 23344556677899888877 78999999999
Q ss_pred CCCCCCchHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeCCCCCCCCCchHHHHHHHHHHHHHHHHHhC
Q 004766 659 HDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLG 727 (732)
Q Consensus 659 ~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 727 (732)
+|.+||+.++.+++++ + +.++++++||++||++..... ....++||.++|.
T Consensus 272 ~D~~vp~~~~~~~~~~---~----------~~~~~l~~~p~~~H~~~~~~~-----~~~~~~~l~~~l~ 322 (322)
T d1vlqa_ 272 MDNICPPSTVFAAYNY---Y----------AGPKEIRIYPYNNHEGGGSFQ-----AVEQVKFLKKLFE 322 (322)
T ss_dssp TCSSSCHHHHHHHHHH---C----------CSSEEEEEETTCCTTTTHHHH-----HHHHHHHHHHHHC
T ss_pred CCCCcCHHHHHHHHHH---C----------CCCeEEEEECCCCCCCccccC-----HHHHHHHHHHHhC
Confidence 9999999998777654 3 568999999999998653221 2245789988873
|
| >d1l7aa_ c.69.1.25 (A:) Cephalosporin C deacetylase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetyl xylan esterase-like domain: Cephalosporin C deacetylase species: Bacillus subtilis [TaxId: 1423]
Probab=99.91 E-value=4.2e-24 Score=220.30 Aligned_cols=246 Identities=15% Similarity=0.103 Sum_probs=175.9
Q ss_pred CCCceEEEEEEEccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCC
Q 004766 446 RSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEY 525 (732)
Q Consensus 446 ~~~~~~~~~~~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~ 525 (732)
.+.+.+++++|++.|| .+|+++++.|++ .++.|+||++||+.+... .|... ...|+++||+|+++|+||.|+.
T Consensus 51 ~~~~~~~~v~~~~~dg-~~i~~~l~~P~~---~~~~P~vv~~HG~~~~~~--~~~~~-~~~la~~Gy~vi~~D~rG~G~s 123 (318)
T d1l7aa_ 51 ADGVKVYRLTYKSFGN-ARITGWYAVPDK---EGPHPAIVKYHGYNASYD--GEIHE-MVNWALHGYATFGMLVRGQQRS 123 (318)
T ss_dssp CSSEEEEEEEEEEGGG-EEEEEEEEEESS---CSCEEEEEEECCTTCCSG--GGHHH-HHHHHHTTCEEEEECCTTTSSS
T ss_pred CCCeEEEEEEEECCCC-cEEEEEEEecCC---CCCceEEEEecCCCCCcc--chHHH-HHHHHHCCCEEEEEeeCCCCCC
Confidence 4567888999999999 999999999987 478999999999877642 33333 3445559999999999999987
Q ss_pred chhHHhcccccC--------------CccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEE
Q 004766 526 GEEWHKGGALAK--------------KQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALA 591 (732)
Q Consensus 526 g~~~~~~~~~~~--------------~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~ 591 (732)
+..+........ ....+.|...+++++..++.+++++|+++|+|+||.+++.++...++ ++++++
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~v~~~~i~~~G~s~Gg~~~~~~~~~~~~-~~~~~~ 202 (318)
T d1l7aa_ 124 EDTSISPHGHALGWMTKGILDKDTYYYRGVYLDAVRALEVISSFDEVDETRIGVTGGSQGGGLTIAAAALSDI-PKAAVA 202 (318)
T ss_dssp CCCCCCSSCCSSSSTTTTTTCTTTCHHHHHHHHHHHHHHHHHHSTTEEEEEEEEEEETHHHHHHHHHHHHCSC-CSEEEE
T ss_pred CCCcccchhhhhcchhhchhhhhhhhhHHHHHHHHHHHHHHHhcccccCcceEEEeeccccHHHHHHhhcCcc-cceEEE
Confidence 654332211111 11346789999999999999999999999999999999999998765 566667
Q ss_pred cCCccccccc-ccCCCCCccc------cccCCC-CCHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCC
Q 004766 592 HVGVMDMLRY-HKFTIGHAWV------SDFGCS-EEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRV 663 (732)
Q Consensus 592 ~~p~~d~~~~-~~~~~~~~~~------~~~g~p-~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v 663 (732)
.+|....... ........+. ...+.. ...+.+..+..+++...+++ +++|+||+||.+|..|
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------i~~P~Lii~G~~D~~v 272 (318)
T d1l7aa_ 203 DYPYLSNFERAIDVALEQPYLEINSFFRRNGSPETEVQAMKTLSYFDIMNLADR----------VKVPVLMSIGLIDKVT 272 (318)
T ss_dssp ESCCSCCHHHHHHHCCSTTTTHHHHHHHHSCCHHHHHHHHHHHHTTCHHHHGGG----------CCSCEEEEEETTCSSS
T ss_pred eccccccHHHHhhcccccccchhhhhhhcccccccccccccccccccccccccc----------CCCCEEEEEECCCCCc
Confidence 7775543322 1111111110 111222 12223333444566666665 7899999999999999
Q ss_pred CchHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeCCCCCCCCCchHHHHHHHHHHHHHHHHHhCC
Q 004766 664 VPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLGA 728 (732)
Q Consensus 664 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~ 728 (732)
|+.++.+++++| +.++++++++++||.+.. +....+++||.++|+.
T Consensus 273 p~~~~~~~~~~l-------------~~~~~l~~~~~~gH~~~~------~~~~~~~~fl~~~LkG 318 (318)
T d1l7aa_ 273 PPSTVFAAYNHL-------------ETKKELKVYRYFGHEYIP------AFQTEKLAFFKQILKG 318 (318)
T ss_dssp CHHHHHHHHHHC-------------CSSEEEEEETTCCSSCCH------HHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHc-------------CCCcEEEEECCCCCCCcH------HHHHHHHHHHHHhCCC
Confidence 999998887764 457899999999997642 2334678999999863
|
| >d2jbwa1 c.69.1.41 (A:8-367) 2,6-dihydropseudooxynicotine hydrolase {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: 2,6-dihydropseudooxynicotine hydrolase-like domain: 2,6-dihydropseudooxynicotine hydrolase species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=99.89 E-value=3.9e-22 Score=208.53 Aligned_cols=240 Identities=15% Similarity=0.078 Sum_probs=167.3
Q ss_pred CceEEEEEEEccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCch
Q 004766 448 EFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGE 527 (732)
Q Consensus 448 ~~~~~~~~~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~ 527 (732)
....+++.++. || .+|+++++.|++ .++.|+||++||..+... .+. .+...|.++||+|+.+|+||.|+...
T Consensus 103 ~~~~e~v~ip~-dg-~~l~g~l~~P~~---~~~~P~Vi~~hG~~~~~e--~~~-~~~~~l~~~G~~vl~~D~~G~G~s~~ 174 (360)
T d2jbwa1 103 SPPAERHELVV-DG-IPMPVYVRIPEG---PGPHPAVIMLGGLESTKE--ESF-QMENLVLDRGMATATFDGPGQGEMFE 174 (360)
T ss_dssp SSCEEEEEEEE-TT-EEEEEEEECCSS---SCCEEEEEEECCSSCCTT--TTH-HHHHHHHHTTCEEEEECCTTSGGGTT
T ss_pred CCCeEEeecCc-CC-cccceEEEecCC---CCCceEEEEeCCCCccHH--HHH-HHHHHHHhcCCEEEEEccccccccCc
Confidence 34578888885 89 999999999976 478999999999765432 222 34455666999999999999876432
Q ss_pred hHHhcccccCCccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCcccccccccCCCC
Q 004766 528 EWHKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIG 607 (732)
Q Consensus 528 ~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~ 607 (732)
.. ........++.+++++|.....+|++||+|+|+|+||++++.++...| +++|+|+..|+.|+.........
T Consensus 175 ~~------~~~~~~~~~~~~v~d~l~~~~~vd~~rI~l~G~S~GG~~Al~~A~~~p-ri~a~V~~~~~~~~~~~~~~~~~ 247 (360)
T d2jbwa1 175 YK------RIAGDYEKYTSAVVDLLTKLEAIRNDAIGVLGRSLGGNYALKSAACEP-RLAACISWGGFSDLDYWDLETPL 247 (360)
T ss_dssp TC------CSCSCHHHHHHHHHHHHHHCTTEEEEEEEEEEETHHHHHHHHHHHHCT-TCCEEEEESCCSCSTTGGGSCHH
T ss_pred cc------cccccHHHHHHHHHHHHHhcccccccceeehhhhcccHHHHHHhhcCC-CcceEEEEcccccHHHHhhhhhh
Confidence 11 112233456778899999999999999999999999999999999877 58999999998876433221100
Q ss_pred --CccccccCCCCCHHHH-HHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhcCCCC
Q 004766 608 --HAWVSDFGCSEEEEEF-YWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLE 684 (732)
Q Consensus 608 --~~~~~~~g~p~~~~~~-~~~~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~ 684 (732)
..|....+.+...+.. .....++....+.+ +.+|+||+||.+|. ||+.++.++++++..
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------i~~P~Lii~G~~D~-vp~~~~~~l~~~~~~------- 309 (360)
T d2jbwa1 248 TKESWKYVSKVDTLEEARLHVHAALETRDVLSQ----------IACPTYILHGVHDE-VPLSFVDTVLELVPA------- 309 (360)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHTCCTTTGGG----------CCSCEEEEEETTSS-SCTHHHHHHHHHSCG-------
T ss_pred hhHHHHHhccCCchHHHHHHHHhhcchhhhHhh----------CCCCEEEEEeCCCC-cCHHHHHHHHHhcCC-------
Confidence 0111112222222222 22233444334443 88999999999996 799999999887753
Q ss_pred CCCCCCCEEEEEeCCCCCCCCCchHHHHHHHHHHHHHHHHHhCC
Q 004766 685 NSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLGA 728 (732)
Q Consensus 685 ~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~ 728 (732)
..+.+.++++++|...... .+....+.+||.++|..
T Consensus 310 -----~~~~l~~~~~g~H~~~~~~---~~~~~~i~dWl~~~L~~ 345 (360)
T d2jbwa1 310 -----EHLNLVVEKDGDHCCHNLG---IRPRLEMADWLYDVLVA 345 (360)
T ss_dssp -----GGEEEEEETTCCGGGGGGT---THHHHHHHHHHHHHHTS
T ss_pred -----CCeEEEEECCCCcCCCcCh---HHHHHHHHHHHHHHhcc
Confidence 3578889999999643222 23445678899999853
|
| >d1lzla_ c.69.1.2 (A:) Heroin esterase {Rhodococcus sp. [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Heroin esterase species: Rhodococcus sp. [TaxId: 1831]
Probab=99.86 E-value=6.9e-21 Score=196.06 Aligned_cols=246 Identities=18% Similarity=0.161 Sum_probs=159.2
Q ss_pred CCCCceEEEEEEEccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCC-cChhHHHHHHhcCcEEEEEcccCCC
Q 004766 445 DRSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPS-FSVSRTILMRHLGAVFCIANIRGGG 523 (732)
Q Consensus 445 ~~~~~~~~~~~~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~-~~~~~~~~l~~~G~~v~~~~~rG~g 523 (732)
....+..+.+.+++.||..+|++.+++|++. +++.|+|||+|||........ +......++.+.||+|+.+|||..+
T Consensus 44 ~~~~v~~~~~~~~~~~g~~~i~~~~~~P~~~--~~~~Pvvv~iHGGG~~~g~~~~~~~~~~~la~~~G~~V~~vdYrl~p 121 (317)
T d1lzla_ 44 SFDGVSLRELSAPGLDGDPEVKIRFVTPDNT--AGPVPVLLWIHGGGFAIGTAESSDPFCVEVARELGFAVANVEYRLAP 121 (317)
T ss_dssp CCTTEEEEEEEECCSTTCCCEEEEEEEESSC--CSCEEEEEEECCSTTTSCCGGGGHHHHHHHHHHHCCEEEEECCCCTT
T ss_pred CCCCceEEEEEEecCCCCceEEEEEECCCCC--CCCCcEEEEecCcccccccccccchHHHhHHhhcCCccccccccccc
Confidence 3445677889999999833799999999873 578999999999854332333 2233345556569999999999877
Q ss_pred CCchhHHhcccccCCccHHHHHHHHHHHHHHc---CCCCCCcEEEEecChhHHHHHHHHhhCCC----eeeEEEEcCCcc
Q 004766 524 EYGEEWHKGGALAKKQNCFDDFISASEYLISA---GYTQSRKLCIEGGSNGGLLVGACINQRPD----LFGCALAHVGVM 596 (732)
Q Consensus 524 ~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~---~~~d~~~i~i~G~S~GG~l~~~~~~~~p~----~f~a~v~~~p~~ 596 (732)
+. .....++|+.+++.|+.++ --+|++||+|+|.|+||++++.++.+.++ .....+...+..
T Consensus 122 e~-----------~~~~~~~d~~~~~~~~~~~~~~~g~D~~rI~l~G~SaGg~la~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (317)
T d1lzla_ 122 ET-----------TFPGPVNDCYAALLYIHAHAEELGIDPSRIAVGGQSAGGGLAAGTVLKARDEGVVPVAFQFLEIPEL 190 (317)
T ss_dssp TS-----------CTTHHHHHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHHCSSCCCEEEEESCCC
T ss_pred cc-----------cccccccccccchhHHHHHHHHhCCCHHHEEEEEeccccHHHHHHHhhhhhcccccccccccccccc
Confidence 53 2234578999999988754 23799999999999999999988875322 123333333322
Q ss_pred cccc-cc---cCCCCCcccc---------ccC----CCCCHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEeeCC
Q 004766 597 DMLR-YH---KFTIGHAWVS---------DFG----CSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADH 659 (732)
Q Consensus 597 d~~~-~~---~~~~~~~~~~---------~~g----~p~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~ 659 (732)
+... .. .+.....+.. .++ .+.++.. ....+|...... ...||+||+||++
T Consensus 191 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~---------~~~pp~li~~g~~ 258 (317)
T d1lzla_ 191 DDRLETVSMTNFVDTPLWHRPNAILSWKYYLGESYSGPEDPDV---SIYAAPSRATDL---------TGLPPTYLSTMEL 258 (317)
T ss_dssp CTTCCSHHHHHCSSCSSCCHHHHHHHHHHHHCTTCCCTTCSCC---CTTTCGGGCSCC---------TTCCCEEEEEETT
T ss_pred cccccccccccccccchhhhhhhHHHHhhhccccccCCCCchh---ccccCchhhhhc---------cCCCCeEEEECCC
Confidence 2111 00 0000000000 000 0000000 000112211111 2468999999999
Q ss_pred CCCCCchHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeCCCCCCCCC--chHHHHHHHHHHHHHHHHHhC
Q 004766 660 DDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGL--PTQKMIDEAADRYGFMAKMLG 727 (732)
Q Consensus 660 D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~--~~~~~~~~~~~~~~fl~~~l~ 727 (732)
|. ...++.+|+++|+++ |+++++++|++++|++.. ......+...++++||.++|.
T Consensus 259 D~--l~~~~~~~~~~L~~~----------G~~v~~~~~~g~~H~f~~~~~~~~~~~~~~~~~~~l~r~Lr 316 (317)
T d1lzla_ 259 DP--LRDEGIEYALRLLQA----------GVSVELHSFPGTFHGSALVATAAVSERGAAEALTAIRRGLR 316 (317)
T ss_dssp CT--THHHHHHHHHHHHHT----------TCCEEEEEETTCCTTGGGSTTSHHHHHHHHHHHHHHHHHTC
T ss_pred CC--CHHHHHHHHHHHHHC----------CCCEEEEEECcCccCCcccCCchHHHHHHHHHHHHHHHHhC
Confidence 94 567999999999998 999999999999998742 112234566788999999885
|
| >d1dina_ c.69.1.9 (A:) Dienelactone hydrolase {Pseudomonas sp., B13 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Dienelactone hydrolase domain: Dienelactone hydrolase species: Pseudomonas sp., B13 [TaxId: 306]
Probab=99.86 E-value=2e-21 Score=190.37 Aligned_cols=211 Identities=15% Similarity=0.131 Sum_probs=150.2
Q ss_pred EEEEEEEccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHH
Q 004766 451 VHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWH 530 (732)
Q Consensus 451 ~~~~~~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~ 530 (732)
.|+|.+++.|| .++++++..|++ +++|+||++|+++|... +...+...|+++||+|+++|+.|.++.+....
T Consensus 3 ~e~v~~~~~dg-~~~~a~~~~P~~----~~~P~vl~~h~~~G~~~---~~~~~a~~lA~~Gy~vl~pd~~~~~~~~~~~~ 74 (233)
T d1dina_ 3 TEGISIQSYDG-HTFGALVGSPAK----APAPVIVIAQEIFGVNA---FMRETVSWLVDQGYAAVCPDLYARQAPGTALD 74 (233)
T ss_dssp CTTCCEECTTS-CEECEEEECCSS----SSEEEEEEECCTTBSCH---HHHHHHHHHHHTTCEEEEECGGGGTSTTCBCC
T ss_pred ceEEEEEcCCC-CEEEEEEECCCC----CCceEEEEeCCCCCCCH---HHHHHHHHHHhcCCcceeeeeccCCCcCcccC
Confidence 35678999999 999999999975 68999999999887531 22234566777999999999987666543110
Q ss_pred -------h----cccccCCccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCccccc
Q 004766 531 -------K----GGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDML 599 (732)
Q Consensus 531 -------~----~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~ 599 (732)
. ............|+.+++++|.+.+. +.+||+++|+|+||.++..++.. +. +.++++..|..
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~d~~aa~~~l~~~~~-~~~~i~~~G~s~Gg~~a~~~a~~-~~-~~~~~~~~~~~--- 148 (233)
T d1dina_ 75 PQDERQREQAYKLWQAFDMEAGVGDLEAAIRYARHQPY-SNGKVGLVGYCLGGALAFLVAAK-GY-VDRAVGYYGVG--- 148 (233)
T ss_dssp TTSHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSTT-EEEEEEEEEETHHHHHHHHHHHH-TC-SSEEEEESCSC---
T ss_pred hHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhCCC-CCCceEEEEecccccceeecccc-cc-cceeccccccc---
Confidence 0 00111223457899999999998876 45899999999999999998876 43 45555443311
Q ss_pred ccccCCCCCccccccCCCCCHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhh
Q 004766 600 RYHKFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVL 679 (732)
Q Consensus 600 ~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~ 679 (732)
.. ++...+.+ ++.|+|++||++|++||+++..++.+.++ .
T Consensus 149 ------------------~~----------~~~~~~~~----------i~~Pvl~~~G~~D~~vp~e~~~~~~~~~~-~- 188 (233)
T d1dina_ 149 ------------------LE----------KQLNKVPE----------VKHPALFHMGGQDHFVPAPSRQLITEGFG-A- 188 (233)
T ss_dssp ------------------GG----------GGGGGGGG----------CCSCEEEEEETTCTTSCHHHHHHHHHHHT-T-
T ss_pred ------------------cc----------cchhhhhc----------cCCcceeeecccccCCCHHHHHHHHHHHh-c-
Confidence 00 11122222 67899999999999999998887776664 3
Q ss_pred cCCCCCCCCCCCEEEEEeCCCCCCCCCch------HHHHHHHHHHHHHHHH
Q 004766 680 CTSLENSPQTNPIIGRIERKAGHGVGLPT------QKMIDEAADRYGFMAK 724 (732)
Q Consensus 680 ~~~~~~~~~~~~~~~~~~~~~gH~~~~~~------~~~~~~~~~~~~fl~~ 724 (732)
+.++++++||+++|+|..+. ....+.+.++++||.+
T Consensus 189 ---------~~~~~~~~y~ga~HgF~~~~~~~y~~~aa~~a~~r~~~ffa~ 230 (233)
T d1dina_ 189 ---------NPLLQVHWYEEAGHSFARTSSSGYVASAAALANERTLDFLAP 230 (233)
T ss_dssp ---------CTTEEEEEETTCCTTTTCTTSTTCCHHHHHHHHHHHHHHHGG
T ss_pred ---------CCCEEEEEECCCCcCCCCCCCccCCHHHHHHHHHHHHHHHHc
Confidence 77899999999999986322 2223446778888864
|
| >d1jfra_ c.69.1.16 (A:) Lipase {Streptomyces exfoliatus [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Lipase domain: Lipase species: Streptomyces exfoliatus [TaxId: 1905]
Probab=99.84 E-value=4.7e-20 Score=183.43 Aligned_cols=208 Identities=15% Similarity=0.038 Sum_probs=151.4
Q ss_pred ceEEEEEEEccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchh
Q 004766 449 FHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEE 528 (732)
Q Consensus 449 ~~~~~~~~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~ 528 (732)
+.+..+.+....++....+.|++|++. .+++.|+||++||+.+.... +. .+...|+++||+|+++|++|.++...
T Consensus 21 ~~~~~~~~~~~~~~g~~~~~ly~P~~~-~~g~~P~Vv~~HG~~g~~~~--~~-~~a~~lA~~Gy~V~~~d~~~~~~~~~- 95 (260)
T d1jfra_ 21 YATSQTSVSSLVASGFGGGTIYYPTST-ADGTFGAVVISPGFTAYQSS--IA-WLGPRLASQGFVVFTIDTNTTLDQPD- 95 (260)
T ss_dssp SCEEEEEECTTTCSSSCCEEEEEESCC-TTCCEEEEEEECCTTCCGGG--TT-THHHHHHTTTCEEEEECCSSTTCCHH-
T ss_pred cceeEEEeccCCcCcccCEEEEEcCCC-CCCCccEEEEECCCCCCHHH--HH-HHHHHHHhCCCEEEEEeeCCCcCCch-
Confidence 444445554322211345778999863 35789999999998776432 32 35567778999999999998765432
Q ss_pred HHhcccccCCccHHHHHHHHHHHHHHc----CCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCcccccccccC
Q 004766 529 WHKGGALAKKQNCFDDFISASEYLISA----GYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKF 604 (732)
Q Consensus 529 ~~~~~~~~~~~~~~~D~~~~~~~l~~~----~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~ 604 (732)
....|+.+++++|.+. +.+|++||+++|+|+||.+++.++...| +++|+|+.+|....
T Consensus 96 -----------~~~~d~~~~~~~l~~~~~~~~~vD~~rI~v~G~S~GG~~al~aa~~~~-~~~A~v~~~~~~~~------ 157 (260)
T d1jfra_ 96 -----------SRGRQLLSALDYLTQRSSVRTRVDATRLGVMGHSMGGGGSLEAAKSRT-SLKAAIPLTGWNTD------ 157 (260)
T ss_dssp -----------HHHHHHHHHHHHHHHTSTTGGGEEEEEEEEEEETHHHHHHHHHHHHCT-TCSEEEEESCCCSC------
T ss_pred -----------hhHHHHHHHHHHHHhhhhhhccccccceEEEeccccchHHHHHHhhhc-cchhheeeeccccc------
Confidence 2247888889998874 6789999999999999999999998865 67888877664211
Q ss_pred CCCCccccccCCCCCHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhcCCCC
Q 004766 605 TIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLE 684 (732)
Q Consensus 605 ~~~~~~~~~~g~p~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~ 684 (732)
....+ +.+|+|++||.+|..||+.+..+.+.++...
T Consensus 158 ----------------------------~~~~~----------~~~P~l~i~G~~D~~vp~~~~~~~~~~~~~~------ 193 (260)
T d1jfra_ 158 ----------------------------KTWPE----------LRTPTLVVGADGDTVAPVATHSKPFYESLPG------ 193 (260)
T ss_dssp ----------------------------CCCTT----------CCSCEEEEEETTCSSSCTTTTHHHHHHHSCT------
T ss_pred ----------------------------ccccc----------cccceeEEecCCCCCCCHHHHHHHHHHhccc------
Confidence 11122 6789999999999999998865555554433
Q ss_pred CCCCCCCEEEEEeCCCCCCCCCchHHHHHHHHHHHHHHHHHhCCC
Q 004766 685 NSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLGAS 729 (732)
Q Consensus 685 ~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~~ 729 (732)
+.+.+++++++++|++...... .....+++||.++|..+
T Consensus 194 ----~~~~~~~~i~ga~H~~~~~~~~--~~~~~~~~wl~~~L~~d 232 (260)
T d1jfra_ 194 ----SLDKAYLELRGASHFTPNTSDT--TIAKYSISWLKRFIDSD 232 (260)
T ss_dssp ----TSCEEEEEETTCCTTGGGSCCH--HHHHHHHHHHHHHHSCC
T ss_pred ----CCCEEEEEECCCccCCCCCChH--HHHHHHHHHHHHHhcCc
Confidence 7889999999999998655443 34446789999998754
|
| >d1jkma_ c.69.1.2 (A:) Carboxylesterase {Bacillus subtilis, brefeldin A esterase [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Carboxylesterase species: Bacillus subtilis, brefeldin A esterase [TaxId: 1423]
Probab=99.84 E-value=6.3e-20 Score=191.53 Aligned_cols=256 Identities=16% Similarity=0.159 Sum_probs=164.4
Q ss_pred CCCCceEEEEEEEccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcC--hhHHHHHHhcCcEEEEEcccCC
Q 004766 445 DRSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFS--VSRTILMRHLGAVFCIANIRGG 522 (732)
Q Consensus 445 ~~~~~~~~~~~~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~--~~~~~~l~~~G~~v~~~~~rG~ 522 (732)
+...+..+...+++.|| ..|++.++.|++. +++.|+|||+|||.......... ......++++|++|+.+|||.+
T Consensus 73 ~~~~v~~~~~~i~~~dg-~~i~~~iy~P~~~--~~~~Pviv~~HGGG~~~gs~~~~~~~~~~~~la~~g~~VvsvdYRla 149 (358)
T d1jkma_ 73 DRDDVETSTETILGVDG-NEITLHVFRPAGV--EGVLPGLVYTHGGGMTILTTDNRVHRRWCTDLAAAGSVVVMVDFRNA 149 (358)
T ss_dssp CCCCEEEEEEEEECTTS-CEEEEEEEEETTC--CSCEEEEEEECCSTTTSSCSSSHHHHHHHHHHHHTTCEEEEEECCCS
T ss_pred CCCCccEEEEEEeCCCC-CEEEEEEEecCCC--CCCCCeEEEecCCeeeeccccccccchHHHHHHhhhheeeeeeeccc
Confidence 34456778888999999 9999999999874 47899999999994432222211 1234556669999999999997
Q ss_pred CCCchhHHhcccccCCccHHHHHHHHHHHHHHcC-CCCCCcEEEEecChhHHHHHHHHhh-----CCCeeeEEEEcCCcc
Q 004766 523 GEYGEEWHKGGALAKKQNCFDDFISASEYLISAG-YTQSRKLCIEGGSNGGLLVGACINQ-----RPDLFGCALAHVGVM 596 (732)
Q Consensus 523 g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~-~~d~~~i~i~G~S~GG~l~~~~~~~-----~p~~f~a~v~~~p~~ 596 (732)
++... .......++|+.++++||.++. ..|++||+|+|.|+||.|++.++.. .+..+.+.++.+|++
T Consensus 150 ~~~~p-------e~~~p~~l~D~~~a~~wl~~~~~~~~~~ri~i~G~SAGG~La~~~a~~~~~~~~~~~~~~~~~~~p~~ 222 (358)
T d1jkma_ 150 WTAEG-------HHPFPSGVEDCLAAVLWVDEHRESLGLSGVVVQGESGGGNLAIATTLLAKRRGRLDAIDGVYASIPYI 222 (358)
T ss_dssp EETTE-------ECCTTHHHHHHHHHHHHHHHTHHHHTEEEEEEEEETHHHHHHHHHHHHHHHTTCGGGCSEEEEESCCC
T ss_pred ccccc-------cCCCchhhHHHHHHHHHHHHhccccCCccceeecccCchHHHHHHHHHHhhcCCCcccccccccccee
Confidence 43211 1233567999999999998762 3578999999999999999877653 234678889999987
Q ss_pred ccccccc----CCCCCccccccCCCCCHHHHH-HHHhcCc--------ccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCC
Q 004766 597 DMLRYHK----FTIGHAWVSDFGCSEEEEEFY-WLIKYSP--------LHNVRRPWEQNPDKPFQYPSTLLLTADHDDRV 663 (732)
Q Consensus 597 d~~~~~~----~~~~~~~~~~~g~p~~~~~~~-~~~~~sp--------~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v 663 (732)
+...... +.....+....+......... ....|.| +...-.. ........||+||++|++|..
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~a---~~~~~~~lPp~li~~g~~D~l- 298 (358)
T d1jkma_ 223 SGGYAWDHERRLTELPSLVENDGYFIENGGMALLVRAYDPTGEHAEDPIAWPYFA---SEDELRGLPPFVVAVNELDPL- 298 (358)
T ss_dssp CCCTTSCHHHHHHHCTHHHHTTTSSSCHHHHHHHHHHHSSSSTTTTCTTTCGGGC---CHHHHTTCCCEEEEEETTCTT-
T ss_pred ccccCccchhhcccccchhcccccccchhhhhhHHhhcCCccCCccCcccccccc---chhhccCCCCEEEEECCCCCC-
Confidence 7542211 000000000001111111111 1222221 1110000 000001468999999999964
Q ss_pred CchHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeCCCCCCCC---Cc--hHHHHHHHHHHHHHHHHH
Q 004766 664 VPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVG---LP--TQKMIDEAADRYGFMAKM 725 (732)
Q Consensus 664 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~---~~--~~~~~~~~~~~~~fl~~~ 725 (732)
..++.+|+++|+++ |+++++++|++++|++. .. .....+....+..|+..+
T Consensus 299 -~~e~~~~~~~L~~a----------Gv~v~~~~~~g~~Hgf~~~~~~~~~~~~~~~~~~i~~Fl~~~ 354 (358)
T d1jkma_ 299 -RDEGIAFARRLARA----------GVDVAARVNIGLVHGADVIFRHWLPAALESTVRDVAGFAADR 354 (358)
T ss_dssp -HHHHHHHHHHHHHT----------TCCEEEEEETTCCTTHHHHSGGGCHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHC----------CCcEEEEEECCCccchhhhccccCCHHHHHHHHHHHHHHHHH
Confidence 46899999999998 99999999999999862 11 122223455677788664
|
| >d1jjia_ c.69.1.2 (A:) Carboxylesterase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Carboxylesterase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.84 E-value=8.3e-20 Score=186.97 Aligned_cols=229 Identities=16% Similarity=0.137 Sum_probs=160.4
Q ss_pred ceEEEEEEEccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCC-cChhHHHHHHhcCcEEEEEcccCCCCCch
Q 004766 449 FHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPS-FSVSRTILMRHLGAVFCIANIRGGGEYGE 527 (732)
Q Consensus 449 ~~~~~~~~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~-~~~~~~~~l~~~G~~v~~~~~rG~g~~g~ 527 (732)
..++.+++++.+| .|++.++.|+. +.|+|||+|||........ +......++++.|++|+.+|||.+.+.
T Consensus 54 ~~~~~~~i~~~~g--~i~~~iy~P~~-----~~P~il~iHGGg~~~g~~~~~~~~~~~l~~~~g~~Vv~v~Yrlap~~-- 124 (311)
T d1jjia_ 54 ERVEDRTIKGRNG--DIRVRVYQQKP-----DSPVLVYYHGGGFVICSIESHDALCRRIARLSNSTVVSVDYRLAPEH-- 124 (311)
T ss_dssp SEEEEEEEEETTE--EEEEEEEESSS-----SEEEEEEECCSTTTSCCTGGGHHHHHHHHHHHTSEEEEEECCCTTTS--
T ss_pred ceEEEEEEeCCCC--cEEEEEEcCCC-----CceEEEEEcCCCCccCChhhhhhhhhhhhhcCCcEEEEecccccccc--
Confidence 4677788888877 69999999864 4699999999954433333 222334555657999999999998763
Q ss_pred hHHhcccccCCccHHHHHHHHHHHHHHc---CCCCCCcEEEEecChhHHHHHHHHhh----CCCeeeEEEEcCCcccccc
Q 004766 528 EWHKGGALAKKQNCFDDFISASEYLISA---GYTQSRKLCIEGGSNGGLLVGACINQ----RPDLFGCALAHVGVMDMLR 600 (732)
Q Consensus 528 ~~~~~~~~~~~~~~~~D~~~~~~~l~~~---~~~d~~~i~i~G~S~GG~l~~~~~~~----~p~~f~a~v~~~p~~d~~~ 600 (732)
.-...++|..++++|+.++ ..+|++||+|+|.|+||.+++.++.. ......+.++..|.+|...
T Consensus 125 ---------~~p~~~~d~~~a~~~~~~~~~~~~~d~~ri~v~G~SaGG~la~~~~~~~~~~~~~~~~~~~l~~p~~~~~~ 195 (311)
T d1jjia_ 125 ---------KFPAAVYDCYDATKWVAENAEELRIDPSKIFVGGDSAGGNLAAAVSIMARDSGEDFIKHQILIYPVVNFVA 195 (311)
T ss_dssp ---------CTTHHHHHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHTTCCCEEEEEEESCCCCSSS
T ss_pred ---------ccchhhhhhhhhhhHHHHhHHHhCcChhHEEEEeeecCCcceeechhhhhhccccccceeeeecceeeecc
Confidence 2345678999999999875 35789999999999999998877653 2346788899999888643
Q ss_pred cccCCCCCccccccCC--C-CCHHHHHHH-------------HhcCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCC
Q 004766 601 YHKFTIGHAWVSDFGC--S-EEEEEFYWL-------------IKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVV 664 (732)
Q Consensus 601 ~~~~~~~~~~~~~~g~--p-~~~~~~~~~-------------~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~ 664 (732)
... ...+++. + ......... ...||+..... ..||+||+||++|..+
T Consensus 196 ~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~----------~~pP~li~~g~~D~l~- 258 (311)
T d1jjia_ 196 PTP------SLLEFGEGLWILDQKIMSWFSEQYFSREEDKFNPLASVIFADLE----------NLPPALIITAEYDPLR- 258 (311)
T ss_dssp CCH------HHHHTSSSCSSCCHHHHHHHHHHHCSSGGGGGCTTTSGGGSCCT----------TCCCEEEEEEEECTTH-
T ss_pred Ccc------cccccccccccccHHHhhhhhhhcccccccccccccchhhcccc----------cCCCEEEEEcCCCCCh-
Confidence 221 0011110 0 111111000 11367665443 5799999999999654
Q ss_pred chHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeCCCCCCCCCc---hHHHHHHHHHHHHHHH
Q 004766 665 PLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLP---TQKMIDEAADRYGFMA 723 (732)
Q Consensus 665 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~---~~~~~~~~~~~~~fl~ 723 (732)
.++..|+++|+++ |+++++++|++++|+|... ..+..+....+.+||.
T Consensus 259 -d~~~~~~~~L~~~----------Gv~v~~~~~~g~~H~F~~~~~~~~~a~~a~~~i~~fl~ 309 (311)
T d1jjia_ 259 -DEGEVFGQMLRRA----------GVEASIVRYRGVLHGFINYYPVLKAARDAINQIAALLV 309 (311)
T ss_dssp -HHHHHHHHHHHHT----------TCCEEEEEEEEEETTGGGGTTTCHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHC----------CCCEEEEEECCCCCccccCCCcCHHHHHHHHHHHHHhC
Confidence 5899999999998 9999999999999987421 1233456667777773
|
| >d1mpxa2 c.69.1.21 (A:24-404) Alpha-amino acid ester hydrolase {Xanthomonas citri [TaxId: 346]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: Alpha-amino acid ester hydrolase species: Xanthomonas citri [TaxId: 346]
Probab=99.84 E-value=3.2e-20 Score=195.35 Aligned_cols=261 Identities=13% Similarity=0.083 Sum_probs=170.8
Q ss_pred CCceEEEEEEEccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCc----cC-CCCcC---hhHHHHHHhcCcEEEEEc
Q 004766 447 SEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNI----SV-TPSFS---VSRTILMRHLGAVFCIAN 518 (732)
Q Consensus 447 ~~~~~~~~~~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~----~~-~~~~~---~~~~~~l~~~G~~v~~~~ 518 (732)
..+..+.+.++.+|| ++|.+.|++|++ .++.|+||..|+.... .. .+... .....+|+++||+|+++|
T Consensus 20 ~~~~~~~v~i~~rDG-~~L~~~v~~P~~---~~~~P~il~~~pYg~~~~~~~~~~~~~~~~~~~~~~~~a~~Gy~vv~~d 95 (381)
T d1mpxa2 20 NDYIKREVMIPMRDG-VKLHTVIVLPKG---AKNAPIVLTRTPYDASGRTERLASPHMKDLLSAGDDVFVEGGYIRVFQD 95 (381)
T ss_dssp CSEEEEEEEEECTTS-CEEEEEEEEETT---CCSEEEEEEEESSCHHHHTCSSCCSSHHHHSCGGGHHHHHTTCEEEEEE
T ss_pred cCceEEEEEEECCCC-CEEEEEEEEeCC---CCCccEEEEEccCCCCCcccccccccccccchhHHHHHHhCCCEEEEEe
Confidence 456778899999999 999999999987 4789999998753211 11 11110 112345566999999999
Q ss_pred ccCCCCCchhHHhcc-----cccCCccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcC
Q 004766 519 IRGGGEYGEEWHKGG-----ALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHV 593 (732)
Q Consensus 519 ~rG~g~~g~~~~~~~-----~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~ 593 (732)
.||.|+.+..|...+ ......+...|+.++++||.++...+.+||+++|+|+||+++++++++.|..++|+|+.+
T Consensus 96 ~RG~g~S~G~~~~~~~~~~~~~~~~~~~~~D~~~~i~w~~~~~~~~~~~vg~~G~SygG~~~~~~a~~~~~~l~a~v~~~ 175 (381)
T d1mpxa2 96 VRGKYGSEGDYVMTRPLRGPLNPSEVDHATDAWDTIDWLVKNVSESNGKVGMIGSSYEGFTVVMALTNPHPALKVAVPES 175 (381)
T ss_dssp CTTSTTCCSCCCTTCCCSBTTBCSSCCHHHHHHHHHHHHHHHCTTEEEEEEEEEETHHHHHHHHHHTSCCTTEEEEEEES
T ss_pred cCccCCCCCceeccchhhhhcccchhHHHHHHHHHHHHHhhcCCcCccceeeecccHHHHHHHHHHhccccccceeeeec
Confidence 999988776664322 222344678999999999999988888999999999999999999999999999999999
Q ss_pred CcccccccccCCC-CC-------cccc---ccCCC-----C--C-HH---------------------HH----------
Q 004766 594 GVMDMLRYHKFTI-GH-------AWVS---DFGCS-----E--E-EE---------------------EF---------- 623 (732)
Q Consensus 594 p~~d~~~~~~~~~-~~-------~~~~---~~g~p-----~--~-~~---------------------~~---------- 623 (732)
|+.|......... +. .|.. ..+.+ . + .. .+
T Consensus 176 ~~~d~~~~~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 255 (381)
T d1mpxa2 176 PMIDGWMGDDWFNYGAFRQVNFDYFTGQLSKRGKGAGIARQGHDDYSNFLQAGSAGDFAKAAGLEQLPWWHKLTEHAAYD 255 (381)
T ss_dssp CCCCTTTTSSSEETTEEBGGGHHHHHHHHSSSSCCCCCCCSSSCHHHHHHHHCSHHHHHHHTTGGGSHHHHHHHHTCSSC
T ss_pred cccccccccccccCchhhhccHHHHHhhhhhccccchhhhhhhhhHHHHHhcccccccchhhccccchHHHHHhhCCCcc
Confidence 9998754321100 00 0000 00000 0 0 00 00
Q ss_pred HHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeCCCCCC
Q 004766 624 YWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHG 703 (732)
Q Consensus 624 ~~~~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~ 703 (732)
.++...++....... .++.|+|+++|..|..+... +...++.++.. ...+.+..|++-|. +|+
T Consensus 256 ~~w~~~s~~~~~~~~--------~i~vP~l~i~G~~d~~~~~~-~~~~~~~~~~~-------~~~~~~~~LviGPw-~H~ 318 (381)
T d1mpxa2 256 AFWQEQALDKVMART--------PLKVPTMWLQGLWDQEDMWG-AIHSYAAMEPR-------DKRNTLNYLVMGPW-RHS 318 (381)
T ss_dssp HHHHTTCHHHHHHTS--------CCCSCEEEEEETTCSSCSSH-HHHHHHHHGGG-------CTTSSSEEEEEESC-CTT
T ss_pred chhhhcCchhhhhhc--------cccCceEEEeccccCCcccc-HHHHHHHHHHh-------ccccCCceEEEecC-cCC
Confidence 111222332211111 27889999999999866544 66667777655 22367788888765 664
Q ss_pred CC------------CchHHHHHHHHHHHHHHHHHhCC
Q 004766 704 VG------------LPTQKMIDEAADRYGFMAKMLGA 728 (732)
Q Consensus 704 ~~------------~~~~~~~~~~~~~~~fl~~~l~~ 728 (732)
.. ............+++||+++|+.
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~wFD~~LKg 355 (381)
T d1mpxa2 319 QVNYDGSALGALNFEGDTARQFRHDVLRPFFDQYLVD 355 (381)
T ss_dssp GGGSCCSEETTEECSSCHHHHHHHHTHHHHHHHHHST
T ss_pred CCccCCCcCCccccccchhhhhHHHHHHHHHHHHhCC
Confidence 21 11122233344578999999964
|
| >d1ju3a2 c.69.1.21 (A:5-351) Bacterial cocaine esterase N-terminal domain {Rhodococcus sp. mb1 [TaxId: 51612]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: Bacterial cocaine esterase N-terminal domain species: Rhodococcus sp. mb1 [TaxId: 51612]
Probab=99.83 E-value=3.3e-20 Score=193.53 Aligned_cols=241 Identities=15% Similarity=0.114 Sum_probs=165.4
Q ss_pred EEEEEEEccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCC--ccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchh
Q 004766 451 VHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFN--ISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEE 528 (732)
Q Consensus 451 ~~~~~~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~--~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~ 528 (732)
.+.+.++.+|| ++|.+.|++|++ +++.|+||+.||..+ ......+......|+. +||+|+++|.||.|+++..
T Consensus 5 ~~~v~ipmrDG-v~L~~~vy~P~~---~~~~P~il~~~pyg~~~~~~~~~~~~~~~~~a~-~GY~vv~~d~RG~g~S~G~ 79 (347)
T d1ju3a2 5 ASNVMVPMRDG-VRLAVDLYRPDA---DGPVPVLLVRNPYDKFDVFAWSTQSTNWLEFVR-DGYAVVIQDTRGLFASEGE 79 (347)
T ss_dssp EEEEEEECTTS-CEEEEEEEEECC---SSCEEEEEEEESSCTTCCHHHHTTSCCTHHHHH-TTCEEEEEECTTSTTCCSC
T ss_pred EeCeEEECCCC-CEEEEEEEEcCC---CCCEEEEEEEcCCCCccccCcCcccHHHHHHHH-CCCEEEEEeeCCccccCCc
Confidence 45599999999 999999999986 478999999987432 2111233333334444 9999999999999987765
Q ss_pred HHhcccccCCccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCcccccccccCC-CC
Q 004766 529 WHKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFT-IG 607 (732)
Q Consensus 529 ~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~-~~ 607 (732)
| ....+...|..++++|+.++.++| +||+++|.|+||+++.++|++.|..++|+|..++..|+....... .+
T Consensus 80 ~------~~~~~~~~d~~d~i~w~~~q~~~~-grVg~~G~SygG~~~~~~A~~~~~~l~aiv~~~~~~d~~~~~~~~~gg 152 (347)
T d1ju3a2 80 F------VPHVDDEADAEDTLSWILEQAWCD-GNVGMFGVSYLGVTQWQAAVSGVGGLKAIAPSMASADLYRAPWYGPGG 152 (347)
T ss_dssp C------CTTTTHHHHHHHHHHHHHHSTTEE-EEEEECEETHHHHHHHHHHTTCCTTEEEBCEESCCSCTCCCCCSCTTC
T ss_pred c------ccccchhhhHHHHHHHHHhhccCC-cceEeeeccccccchhhhhhcccccceeeeeccccchhhhhhhhhcCC
Confidence 4 233445689999999999999988 799999999999999999999999999999999999874321110 00
Q ss_pred Cc-------ccc--------ccCC--CCCH-------------------------------------------HHHHHHH
Q 004766 608 HA-------WVS--------DFGC--SEEE-------------------------------------------EEFYWLI 627 (732)
Q Consensus 608 ~~-------~~~--------~~g~--p~~~-------------------------------------------~~~~~~~ 627 (732)
.. |.. .... +.+. ..-+++.
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~ 232 (347)
T d1ju3a2 153 ALSVEALLGWSALIGTGLITSRSDARPEDAADFVQLAAILNDVAGAASVTPLAEQPLLGRLIPWVIDQVVDHPDNDESWQ 232 (347)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTSSSCCTTHHHHHHHHHHHHHCHHHHHTCSSTTCCTTHHHHCTHHHHTTTTCCSCCHHHH
T ss_pred ccchhhHHHHHHHhhccccccccccCcchhhHHhhhhhhcccchhhhccCccccccccccchhhHHHHhhhcccchhhhh
Confidence 00 000 0000 0000 0001234
Q ss_pred hcCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeCCCCCCCCC-
Q 004766 628 KYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGL- 706 (732)
Q Consensus 628 ~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~- 706 (732)
+.+|+..+.+ +..|+|+++|..|..++ .+.+++.+++. +.+..+++-|. +|+...
T Consensus 233 ~~~~~~~~~~----------i~vP~L~i~G~~D~~~~--~~~~~~~~~~~-----------~~~~~liigpw-~H~~~~~ 288 (347)
T d1ju3a2 233 SISLFERLGG----------LATPALITAGWYDGFVG--ESLRTFVAVKD-----------NADARLVVGPW-SHSNLTG 288 (347)
T ss_dssp TTCCHHHHTT----------CCCCEEEEEEEECTTHH--HHHHHHHHHTT-----------TSCEEEEEEEE-ESSCCSS
T ss_pred cCCHHHHhhc----------CCCCEEEeccccCCCcc--hhHHHHHHhhc-----------cCCceEEEcCc-cccCccc
Confidence 4456555555 88999999999997654 56777777764 55677777654 454311
Q ss_pred -----------chHHHHHHHHHHHHHHHHHhCC
Q 004766 707 -----------PTQKMIDEAADRYGFMAKMLGA 728 (732)
Q Consensus 707 -----------~~~~~~~~~~~~~~fl~~~l~~ 728 (732)
... ..+.....+.||+++|+.
T Consensus 289 ~~~~~~~g~~~~~~-~~~~~~~~l~wfD~~LKg 320 (347)
T d1ju3a2 289 RNADRKFGIAATYP-IQEATTMHKAFFDRHLRG 320 (347)
T ss_dssp EETTEECCGGGSCC-HHHHHHHHHHHHHHHTSC
T ss_pred ccCCCCCCcccccc-HHHHHHHHHHHHHHHhCC
Confidence 111 235556789999999964
|
| >d2pbla1 c.69.1.2 (A:1-261) Uncharacterized protein TM1040_2492 {Silicibacter sp. tm1040 [TaxId: 292414]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Uncharacterized protein TM1040 2492 species: Silicibacter sp. tm1040 [TaxId: 292414]
Probab=99.83 E-value=5.7e-20 Score=182.18 Aligned_cols=188 Identities=11% Similarity=0.065 Sum_probs=139.6
Q ss_pred eEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCccHHH
Q 004766 464 KIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFD 543 (732)
Q Consensus 464 ~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~ 543 (732)
.-.+-|++|++ .+.|+||++|||+....+......+...|+++||+|+.+|||.+++.. ....++
T Consensus 49 ~~~lDiy~P~~----~~~P~vv~iHGG~w~~g~~~~~~~~a~~l~~~G~~Vv~~~YRl~p~~~-----------~p~~~~ 113 (261)
T d2pbla1 49 RHKFDLFLPEG----TPVGLFVFVHGGYWMAFDKSSWSHLAVGALSKGWAVAMPSYELCPEVR-----------ISEITQ 113 (261)
T ss_dssp TCEEEEECCSS----SCSEEEEEECCSTTTSCCGGGCGGGGHHHHHTTEEEEEECCCCTTTSC-----------HHHHHH
T ss_pred CeEEEEeccCC----CCCCeEEEECCCCCccCChhHhhhHHHHHhcCCceeeccccccccccc-----------CchhHH
Confidence 33456778865 467999999999865544332223445566699999999999876531 234679
Q ss_pred HHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCC------CeeeEEEEcCCcccccccccCCCCCccccccCCC
Q 004766 544 DFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRP------DLFGCALAHVGVMDMLRYHKFTIGHAWVSDFGCS 617 (732)
Q Consensus 544 D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p------~~f~a~v~~~p~~d~~~~~~~~~~~~~~~~~g~p 617 (732)
|+.++++|+.++. ++||+|+|+|+||+|+++++.... ..+++++...|+.|+........ ...++
T Consensus 114 d~~~a~~~~~~~~---~~rI~l~G~SaGG~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-- 184 (261)
T d2pbla1 114 QISQAVTAAAKEI---DGPIVLAGHSAGGHLVARMLDPEVLPEAVGARIRNVVPISPLSDLRPLLRTSM----NEKFK-- 184 (261)
T ss_dssp HHHHHHHHHHHHS---CSCEEEEEETHHHHHHHHTTCTTTSCHHHHTTEEEEEEESCCCCCGGGGGSTT----HHHHC--
T ss_pred HHHHHHHHHHhcc---cCceEEEEcchHHHHHHHHhcCcccccchhhchhhhhccccccccchhhhhhh----ccccc--
Confidence 9999999999874 589999999999999988876532 25788899999888754332111 11122
Q ss_pred CCHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEe
Q 004766 618 EEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIE 697 (732)
Q Consensus 618 ~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 697 (732)
.+++. ..+.||+.++.. ..||+||+||.+|..|+..|+.+++++|+. ..+++
T Consensus 185 ~~~~~---~~~~SP~~~~~~----------~~~P~li~~G~~D~~~~~~qs~~~~~~l~~---------------~~~~~ 236 (261)
T d2pbla1 185 MDADA---AIAESPVEMQNR----------YDAKVTVWVGGAERPAFLDQAIWLVEAWDA---------------DHVIA 236 (261)
T ss_dssp CCHHH---HHHTCGGGCCCC----------CSCEEEEEEETTSCHHHHHHHHHHHHHHTC---------------EEEEE
T ss_pred CCHHH---HHHhCchhhccc----------CCCeEEEEEecCCCchHHHHHHHHHHHhCC---------------CceEe
Confidence 22332 467899999887 689999999999999999999999998863 45678
Q ss_pred CCCCCC
Q 004766 698 RKAGHG 703 (732)
Q Consensus 698 ~~~gH~ 703 (732)
++.+|+
T Consensus 237 ~~~~HF 242 (261)
T d2pbla1 237 FEKHHF 242 (261)
T ss_dssp TTCCTT
T ss_pred CCCCch
Confidence 999995
|
| >d2fuka1 c.69.1.36 (A:3-220) XC6422 protein {Xanthomonas campestris [TaxId: 339]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Atu1826-like domain: XC6422 protein species: Xanthomonas campestris [TaxId: 339]
Probab=99.82 E-value=2.4e-19 Score=171.28 Aligned_cols=207 Identities=13% Similarity=0.014 Sum_probs=148.4
Q ss_pred EEEEEEEccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCC--CCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchh
Q 004766 451 VHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGG--FNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEE 528 (732)
Q Consensus 451 ~~~~~~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~--~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~ 528 (732)
...+.+.+++| +|.+.+..|+... ..+.+++|++|+. +|.++...+...+...|+++||.|+.+|+||.|+....
T Consensus 8 ~~~l~i~gp~G--~l~~~~~~p~~~~-~~~~~~~vl~Hph~~~GG~~~~~~~~~la~~l~~~G~~vlrfd~RG~G~S~g~ 84 (218)
T d2fuka1 8 SAALTLDGPVG--PLDVAVDLPEPDV-AVQPVTAIVCHPLSTEGGSMHNKVVTMAARALRELGITVVRFNFRSVGTSAGS 84 (218)
T ss_dssp CEEEEEEETTE--EEEEEEECCCTTS-CCCSEEEEEECSCTTTTCSTTCHHHHHHHHHHHTTTCEEEEECCTTSTTCCSC
T ss_pred ceEEEEeCCCc--cEEEEEEcCCCCC-CCCCcEEEEECCCCCCCcCCCChHHHHHHHHHHHcCCeEEEeecCCCccCCCc
Confidence 35678888888 7999988886532 3455677777743 44433332333345667779999999999998875432
Q ss_pred HHhcccccCCccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCcccccccccCCCCC
Q 004766 529 WHKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGH 608 (732)
Q Consensus 529 ~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~ 608 (732)
........+|+.++++|+.++. +.++++++|+|+||.+++.++.+. ..+++|+.+|..+...+
T Consensus 85 ------~~~~~~~~~D~~a~~~~~~~~~--~~~~v~l~G~S~Gg~va~~~a~~~--~~~~lil~ap~~~~~~~------- 147 (218)
T d2fuka1 85 ------FDHGDGEQDDLRAVAEWVRAQR--PTDTLWLAGFSFGAYVSLRAAAAL--EPQVLISIAPPAGRWDF------- 147 (218)
T ss_dssp ------CCTTTHHHHHHHHHHHHHHHHC--TTSEEEEEEETHHHHHHHHHHHHH--CCSEEEEESCCBTTBCC-------
T ss_pred ------cCcCcchHHHHHHHHHHHhhcc--cCceEEEEEEcccchhhhhhhccc--ccceEEEeCCcccchhh-------
Confidence 2334556899999999999873 457999999999999998888763 24677887775432110
Q ss_pred ccccccCCCCCHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhcCCCCCCCC
Q 004766 609 AWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQ 688 (732)
Q Consensus 609 ~~~~~~g~p~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~ 688 (732)
++ . ....|+|++||++|..||+.++.++++++
T Consensus 148 ---------------------~~-----~---------~~~~P~Lvi~G~~D~~vp~~~~~~l~~~~------------- 179 (218)
T d2fuka1 148 ---------------------SD-----V---------QPPAQWLVIQGDADEIVDPQAVYDWLETL------------- 179 (218)
T ss_dssp ---------------------TT-----C---------CCCSSEEEEEETTCSSSCHHHHHHHHTTC-------------
T ss_pred ---------------------hc-----c---------ccccceeeEecCCCcCcCHHHHHHHHHHc-------------
Confidence 00 0 14579999999999999999988886654
Q ss_pred CCCEEEEEeCCCCCCCCCchHHHHHHHHHHHHHHHHHhCC
Q 004766 689 TNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLGA 728 (732)
Q Consensus 689 ~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~ 728 (732)
..+.+++++++++|+|..... +....+.+|+.++|..
T Consensus 180 ~~~~~l~~i~ga~H~f~~~~~---~l~~~~~~~v~~~l~~ 216 (218)
T d2fuka1 180 EQQPTLVRMPDTSHFFHRKLI---DLRGALQHGVRRWLPA 216 (218)
T ss_dssp SSCCEEEEETTCCTTCTTCHH---HHHHHHHHHHGGGCSS
T ss_pred cCCceEEEeCCCCCCCCCCHH---HHHHHHHHHHHHhcCC
Confidence 345688999999999876443 3445677899888864
|
| >d1thta_ c.69.1.13 (A:) Myristoyl-ACP-specific thioesterase {Vibrio harveyi [TaxId: 669]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterases domain: Myristoyl-ACP-specific thioesterase species: Vibrio harveyi [TaxId: 669]
Probab=99.82 E-value=1.2e-19 Score=184.83 Aligned_cols=236 Identities=12% Similarity=0.049 Sum_probs=154.3
Q ss_pred EEEEEEccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCch-hHH
Q 004766 452 HQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGE-EWH 530 (732)
Q Consensus 452 ~~~~~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~-~~~ 530 (732)
....+++.|| ..|++|.+.|++.. ..+.|+||++||..+.. ..|. .+...|.++||.|+.+|+||++|... .+.
T Consensus 5 ~~h~~~~~dg-~~l~~w~~~p~~~~-~~~~~~Vvi~HG~~~~~--~~~~-~~a~~L~~~G~~Vi~~D~rGh~G~S~g~~~ 79 (302)
T d1thta_ 5 IAHVLRVNNG-QELHVWETPPKENV-PFKNNTILIASGFARRM--DHFA-GLAEYLSTNGFHVFRYDSLHHVGLSSGSID 79 (302)
T ss_dssp EEEEEEETTT-EEEEEEEECCCTTS-CCCSCEEEEECTTCGGG--GGGH-HHHHHHHTTTCCEEEECCCBCC--------
T ss_pred eeeEEEcCCC-CEEEEEEecCcCCC-CCCCCEEEEeCCCcchH--HHHH-HHHHHHHHCCCEEEEecCCCCCCCCCCccc
Confidence 4456788999 99999999998743 46789999999965543 2343 45677777999999999999643322 111
Q ss_pred hcccccCCccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCcccccccccCC-----
Q 004766 531 KGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFT----- 605 (732)
Q Consensus 531 ~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~----- 605 (732)
.. .-....+|+.++++||.+++ +++++++|+||||++++.++.. ..++++|+.+|+.++..+....
T Consensus 80 ~~----~~~~~~~dl~~vi~~l~~~~---~~~i~lvG~SmGG~ial~~A~~--~~v~~li~~~g~~~~~~~~~~~~~~~~ 150 (302)
T d1thta_ 80 EF----TMTTGKNSLCTVYHWLQTKG---TQNIGLIAASLSARVAYEVISD--LELSFLITAVGVVNLRDTLEKALGFDY 150 (302)
T ss_dssp CC----CHHHHHHHHHHHHHHHHHTT---CCCEEEEEETHHHHHHHHHTTT--SCCSEEEEESCCSCHHHHHHHHHSSCG
T ss_pred CC----CHHHHHHHHHHHHHhhhccC---CceeEEEEEchHHHHHHHHhcc--cccceeEeecccccHHHHHHHHHhhcc
Confidence 11 11124678999999998764 5689999999999999887765 3478899999988764332100
Q ss_pred --CCCccccc----cCCCCCHHHHH-HHHhc------CcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHH
Q 004766 606 --IGHAWVSD----FGCSEEEEEFY-WLIKY------SPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLL 672 (732)
Q Consensus 606 --~~~~~~~~----~g~p~~~~~~~-~~~~~------sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~ 672 (732)
.......+ .+.......+. ..... ++...+++ +..|+|++||.+|..||+.++.+++
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------i~~PvLii~G~~D~~V~~~~~~~l~ 220 (302)
T d1thta_ 151 LSLPIDELPNDLDFEGHKLGSEVFVRDCFEHHWDTLDSTLDKVAN----------TSVPLIAFTANNDDWVKQEEVYDML 220 (302)
T ss_dssp GGSCGGGCCSEEEETTEEEEHHHHHHHHHHTTCSSHHHHHHHHTT----------CCSCEEEEEETTCTTSCHHHHHHHH
T ss_pred chhhhhhccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHhh----------cCCCEEEEEeCCCCccCHHHHHHHH
Confidence 00000000 00001111110 11110 12233444 7899999999999999999999998
Q ss_pred HHHHHhhcCCCCCCCCCCCEEEEEeCCCCCCCCCchHHHHHHHHHHHHHHH
Q 004766 673 ATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMA 723 (732)
Q Consensus 673 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~ 723 (732)
+.+. ....++.+++++||.+..........++.+..++.
T Consensus 221 ~~i~------------s~~~kl~~~~g~~H~l~e~~~~~~~~~~~~~~~~~ 259 (302)
T d1thta_ 221 AHIR------------TGHCKLYSLLGSSHDLGENLVVLRNFYQSVTKAAI 259 (302)
T ss_dssp TTCT------------TCCEEEEEETTCCSCTTSSHHHHHHHHHHHHHHHH
T ss_pred HhCC------------CCCceEEEecCCCcccccChHHHHHHHHHHHHHHh
Confidence 8765 34689999999999987655433344555555543
|
| >d1u4na_ c.69.1.2 (A:) Carboxylesterase {Alicyclobacillus acidocaldarius [TaxId: 405212]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Carboxylesterase species: Alicyclobacillus acidocaldarius [TaxId: 405212]
Probab=99.82 E-value=9.3e-20 Score=186.68 Aligned_cols=237 Identities=14% Similarity=0.090 Sum_probs=156.7
Q ss_pred eEEEEEEEccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCC-CCcChhHHHHHHhcCcEEEEEcccCCCCCchh
Q 004766 450 HVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVT-PSFSVSRTILMRHLGAVFCIANIRGGGEYGEE 528 (732)
Q Consensus 450 ~~~~~~~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~-~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~ 528 (732)
.++.+.++. +| .+|.+.+++|++. +++.|+|||+|||...... ..+......++.+.|+.|+.+|||...+.
T Consensus 45 ~~~~~~~~~-~g-~~i~~~~y~P~~~--~~~~Pvvv~iHGGg~~~g~~~~~~~~~~~~a~~~~~~v~~v~Yrl~p~~--- 117 (308)
T d1u4na_ 45 EVREFDMDL-PG-RTLKVRMYRPEGV--EPPYPALVYYHGGGWVVGDLETHDPVCRVLAKDGRAVVFSVDYRLAPEH--- 117 (308)
T ss_dssp EEEEEEEEE-TT-EEEEEEEEECTTC--CSSEEEEEEECCSTTTSCCTTTTHHHHHHHHHHHTSEEEEECCCCTTTS---
T ss_pred cEEEEEEec-CC-ceEEEEEEecccc--CCCCCEEEEEecCeeeeeccccccchhhhhhhccccccccccccccccc---
Confidence 566677765 78 8999999999875 4689999999999543322 23333334555544567888999987652
Q ss_pred HHhcccccCCccHHHHHHHHHHHHHHcC---CCCCCcEEEEecChhHHHHHHHHhhCCC----eeeEEEEcCCccccccc
Q 004766 529 WHKGGALAKKQNCFDDFISASEYLISAG---YTQSRKLCIEGGSNGGLLVGACINQRPD----LFGCALAHVGVMDMLRY 601 (732)
Q Consensus 529 ~~~~~~~~~~~~~~~D~~~~~~~l~~~~---~~d~~~i~i~G~S~GG~l~~~~~~~~p~----~f~a~v~~~p~~d~~~~ 601 (732)
......+|+.++++|+.++. .+|++||+++|+|+||++++.++....+ ...+..+..|..+....
T Consensus 118 --------~~p~~~~D~~~~~~~l~~~~~~~~~d~~ri~~~G~SaGG~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (308)
T d1u4na_ 118 --------KFPAAVEDAYDALQWIAERAADFHLDPARIAVGGDSAGGNLAAVTSILAKERGGPALAFQLLIYPSTGYDPA 189 (308)
T ss_dssp --------CTTHHHHHHHHHHHHHHTTTGGGTEEEEEEEEEEETHHHHHHHHHHHHHHHHTCCCCCCEEEESCCCCCCTT
T ss_pred --------ccccccchhhhhhhHHHHhHHhcCCCcceEEEeeccccchhHHHHHHhhhhccCCCcccccccccccccccc
Confidence 33456789999999998764 5799999999999999999988775333 23444555555443221
Q ss_pred ccCCCCCccccccCCC---CCHHHHHHHH------------hcCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCch
Q 004766 602 HKFTIGHAWVSDFGCS---EEEEEFYWLI------------KYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPL 666 (732)
Q Consensus 602 ~~~~~~~~~~~~~g~p---~~~~~~~~~~------------~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~ 666 (732)
... ....+.... .......... ..||...... ...||+||+||++|..+ .
T Consensus 190 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~d~---------~~~Pp~li~~g~~D~l~--~ 254 (308)
T d1u4na_ 190 HPP----ASIEENAEGYLLTGGMSLWFLDQYLNSLEELTHPWFSPVLYPDL---------SGLPPAYIATAQYDPLR--D 254 (308)
T ss_dssp SCC----HHHHHTSSSSSSCHHHHHHHHHHHCSSGGGGGCTTTCGGGCSCC---------TTCCCEEEEEEEECTTH--H
T ss_pred ccc----chhhhccccccccchhhhhhhhcccCccccccchhhhhhhchhh---------cCCCCeeEEecCcCCch--H
Confidence 110 000011100 0000000111 1122222222 24689999999999655 5
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeCCCCCCCCC---chHHHHHHHHHHHHHHHHHh
Q 004766 667 HSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGL---PTQKMIDEAADRYGFMAKML 726 (732)
Q Consensus 667 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~---~~~~~~~~~~~~~~fl~~~l 726 (732)
++.+|+++|+++ |++++++++++++|++.. ...+..+.+.++.+||.+.|
T Consensus 255 ~~~~~~~~L~~~----------G~~v~~~~~~g~~Hgf~~~~~~~~~a~~~~~~~~~fl~~~L 307 (308)
T d1u4na_ 255 VGKLYAEALNKA----------GVKVEIENFEDLIHGFAQFYSLSPGATKALVRIAEKLRDAL 307 (308)
T ss_dssp HHHHHHHHHHHT----------TCCEEEEEEEEEETTGGGGTTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHC----------CCCEEEEEECCCCEeCcccCCCCHHHHHHHHHHHHHHHHhh
Confidence 899999999998 999999999999998742 12234567788899998876
|
| >d1ufoa_ c.69.1.27 (A:) Hypothetical protein TT1662 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Hypothetical protein TT1662 domain: Hypothetical protein TT1662 species: Thermus thermophilus [TaxId: 274]
Probab=99.81 E-value=2.2e-19 Score=176.32 Aligned_cols=227 Identities=15% Similarity=0.043 Sum_probs=146.1
Q ss_pred eEEEEEEEccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhH
Q 004766 450 HVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEW 529 (732)
Q Consensus 450 ~~~~~~~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~ 529 (732)
++|++.+ .| +++....|+ ++.|+||++||..+... .|. .+...|+++||+|+++|+||.|+....+
T Consensus 4 ~~~~~~l---~g---~~~~~~~p~-----~~~~~vl~lHG~~~~~~--~~~-~~~~~la~~G~~V~~~D~~g~g~s~~~~ 69 (238)
T d1ufoa_ 4 RTERLTL---AG---LSVLARIPE-----APKALLLALHGLQGSKE--HIL-ALLPGYAERGFLLLAFDAPRHGEREGPP 69 (238)
T ss_dssp EEEEEEE---TT---EEEEEEEES-----SCCEEEEEECCTTCCHH--HHH-HTSTTTGGGTEEEEECCCTTSTTSSCCC
T ss_pred EEEEEEE---CC---EEEEecCCC-----CCCeEEEEeCCCCCCHH--HHH-HHHHHHHHCCCEEEEecCCCCCCCcccc
Confidence 3455443 46 344444554 46799999999877642 222 2234455699999999999987653322
Q ss_pred HhcccccCCcc---HH-HHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCcccccccccCC
Q 004766 530 HKGGALAKKQN---CF-DDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFT 605 (732)
Q Consensus 530 ~~~~~~~~~~~---~~-~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~ 605 (732)
........... .. .++.++...+...+.+++++++++|+|+||++++.++.++|+.+.+ ++..+..+...
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~G~S~Gg~~a~~~~~~~p~~~~~-~~~~~~~~~~~----- 143 (238)
T d1ufoa_ 70 PSSKSPRYVEEVYRVALGFKEEARRVAEEAERRFGLPLFLAGGSLGAFVAHLLLAEGFRPRGV-LAFIGSGFPMK----- 143 (238)
T ss_dssp CCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEETHHHHHHHHHHHTTCCCSCE-EEESCCSSCCC-----
T ss_pred cccccchhhhhhhhhHHhHHHHHHHHhhhccccCCceEEEEEecccHHHHHHHHhcCcchhhe-eeeeeeccccc-----
Confidence 11110000011 11 2222333334444567889999999999999999999998875544 44444332211
Q ss_pred CCCccccccCCCCCHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhcCCCCC
Q 004766 606 IGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLEN 685 (732)
Q Consensus 606 ~~~~~~~~~g~p~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~ 685 (732)
..+...+..+.. ..+...+|..+..+. ..+|+||+||.+|..||+.++.+++++|++.
T Consensus 144 -----~~~~~~~~~~~~-~~~~~~~~~~~~~~~---------~~~P~li~~G~~D~~v~~~~~~~~~~~l~~~------- 201 (238)
T d1ufoa_ 144 -----LPQGQVVEDPGV-LALYQAPPATRGEAY---------GGVPLLHLHGSRDHIVPLARMEKTLEALRPH------- 201 (238)
T ss_dssp -----CCTTCCCCCHHH-HHHHHSCGGGCGGGG---------TTCCEEEEEETTCTTTTHHHHHHHHHHHGGG-------
T ss_pred -----cccccccccccc-cchhhhhhhhhhhhh---------cCCCeEEEEcCCCCccCHHHHHHHHHHHHhc-------
Confidence 122222333333 344567787777663 6789999999999999999999999999987
Q ss_pred CCCCC--CEEEEEeCCCCCCCCCchHHHHHHHHHHHHHHHHHhC
Q 004766 686 SPQTN--PIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLG 727 (732)
Q Consensus 686 ~~~~~--~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 727 (732)
+. .+.+.+++++||.+.. +......+||.++|.
T Consensus 202 ---~~~~~~~~~~~~g~gH~~~~------~~~~~~~~f~~~~l~ 236 (238)
T d1ufoa_ 202 ---YPEGRLARFVEEGAGHTLTP------LMARVGLAFLEHWLE 236 (238)
T ss_dssp ---CTTCCEEEEEETTCCSSCCH------HHHHHHHHHHHHHHH
T ss_pred ---CCCceEEEEEECCCCCccCH------HHHHHHHHHHHHHhc
Confidence 54 4788899999998752 233456789988874
|
| >d1lnsa3 c.69.1.21 (A:146-550) X-Prolyl dipeptidyl aminopeptidase PepX, middle domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: X-Prolyl dipeptidyl aminopeptidase PepX, middle domain species: Lactococcus lactis [TaxId: 1358]
Probab=99.80 E-value=8e-19 Score=186.09 Aligned_cols=252 Identities=15% Similarity=0.075 Sum_probs=176.9
Q ss_pred CCCCCCCceEEEEEEEcc-----CCCe--eEEEEEEEcCCCCCCCCccEEEEEcCCCCc---------------------
Q 004766 442 PGFDRSEFHVHQVFVPSK-----DGST--KIPMFIVSKKNIKLDGSHPCLLYGYGGFNI--------------------- 493 (732)
Q Consensus 442 ~~~~~~~~~~~~~~~~s~-----dG~~--~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~--------------------- 493 (732)
|.|+.+.+..|.+++.+. || + .|.+.|++|++. ++.|+|+..+-.+..
T Consensus 14 ~~~~~~~~~re~v~v~~~~dt~rDG-~~d~l~~di~rP~~~---~k~Pvil~~sPY~~~~~~~~~~~~~~~~~~~~~~~~ 89 (405)
T d1lnsa3 14 ATFDSSLLEREVLWVESPVDSEQRG-ENDLIKIQIIRPKST---EKLPVVMTASPYHLGINDKANDLALHDMNVELEEKT 89 (405)
T ss_dssp SCSCGGGCEEEEEEEECSCCTTCSS-SCCEEEEEEEECCCS---SCEEEEEEECSSTTCCCHHHHHHHCCCCCCCCCCCC
T ss_pred ceecCCCceEeEEEEeCCCCCCCCC-CEeEEEEEEEccCCC---CCceEEEEeCCcCCCCcccccccccccccccccccc
Confidence 347766777788888766 89 8 599999999873 689999965442110
Q ss_pred -----------------------------cCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCccHHHH
Q 004766 494 -----------------------------SVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDD 544 (732)
Q Consensus 494 -----------------------------~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D 544 (732)
.....+.....++++.+||+|+.+|.||.|+++..|... .....+|
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GYavv~~D~RG~g~S~G~~~~~-----~~~e~~D 164 (405)
T d1lnsa3 90 SHEIHVEQKLPQKLSAKAKELPIVDKAPYRFTHGWTYSLNDYFLTRGFASIYVAGVGTRSSDGFQTSG-----DYQQIYS 164 (405)
T ss_dssp SEECCCCCCCCCCCCCCCCCCCEESSCSCBCCCCCCCHHHHHHHTTTCEEEEECCTTSTTSCSCCCTT-----SHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccchHHHHhCCCEEEEECCCCCCCCCCccccC-----Chhhhhh
Confidence 000111122345566699999999999999887766432 3456789
Q ss_pred HHHHHHHHHHcCCCC--------------CCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCcccccccccCCC----
Q 004766 545 FISASEYLISAGYTQ--------------SRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTI---- 606 (732)
Q Consensus 545 ~~~~~~~l~~~~~~d--------------~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~---- 606 (732)
..++|+||.++...+ .+|||++|.|+||++..+++++.|..++|+|..++..|+.+......
T Consensus 165 ~~~~IeWl~~~~~~~~~~~~~~~~~q~WsnGkVGm~G~SY~G~~q~~aA~~~pp~LkAivp~~~~~d~y~~~~~~G~~~~ 244 (405)
T d1lnsa3 165 MTAVIDWLNGRARAYTSRKKTHEIKASWANGKVAMTGKSYLGTMAYGAATTGVEGLELILAEAGISSWYNYYRENGLVRS 244 (405)
T ss_dssp HHHHHHHHTTSSCEESSTTCCCEECCTTEEEEEEEEEETHHHHHHHHHHTTTCTTEEEEEEESCCSBHHHHHBSSSSBCC
T ss_pred HHHHHHHHHhcccccccccccccccccccCCeeEEEecCHHHHHHHHHHhcCCccceEEEecCccccHHHHhhcCCcccc
Confidence 999999998643222 26899999999999999999999999999999999999754321100
Q ss_pred -CCcccc------------------------------------ccC-CCCCHHHHHHHHhcCcccCCCCCCCCCCCCCCC
Q 004766 607 -GHAWVS------------------------------------DFG-CSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQ 648 (732)
Q Consensus 607 -~~~~~~------------------------------------~~g-~p~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~ 648 (732)
...|.. +.. .+.. -+++.+.||..++++ +
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---d~~w~~~s~~~~~~~----------I 311 (405)
T d1lnsa3 245 PGGFPGEDLDVLAALTYSRNLDGADFLKGNAEYEKRLAEMTAALDRKSGDY---NQFWHDRNYLINTDK----------V 311 (405)
T ss_dssp CTTCTTCCHHHHHHHHCGGGGSHHHHHHHHHHHHHHHHHHHHHHCTTTCCC---CHHHHTTBGGGGGGG----------C
T ss_pred ccchhhhhhhhhhccccccccccchhhhchhhhhhccchhhhhhhhccccc---hhhhhhcChhhhhhc----------C
Confidence 000000 000 0000 123566788777776 8
Q ss_pred CCeEEEEeeCCCCCCCchHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeCCCCCCCCCchHHHHHHHHHHHHHHHHHhCC
Q 004766 649 YPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLGA 728 (732)
Q Consensus 649 ~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~ 728 (732)
++|+|+++|..|..|++.++.+++++|+. +.+..|.+.| .+|........ .+....++.||.++|..
T Consensus 312 ~vP~L~i~Gw~D~~v~~~~~~~~y~al~~-----------~~~~~Lilgp-w~H~~~~~~~~-~d~~~~~~~wFD~~LkG 378 (405)
T d1lnsa3 312 KADVLIVHGLQDWNVTPEQAYNFWKALPE-----------GHAKHAFLHR-GAHIYMNSWQS-IDFSETINAYFVAKLLD 378 (405)
T ss_dssp CSEEEEEEETTCCSSCTHHHHHHHHHSCT-----------TCCEEEEEES-CSSCCCTTBSS-CCHHHHHHHHHHHHHTT
T ss_pred CCCEEEEEeccCCCCCHHHHHHHHHHHHh-----------CCCcEEEEeC-CCCCCCccccc-chHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999863 5677888876 58875432211 23455678899999954
|
| >d1sfra_ c.69.1.3 (A:) Antigen 85a {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Mycobacterial antigens domain: Antigen 85a species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.80 E-value=1.5e-19 Score=183.24 Aligned_cols=254 Identities=14% Similarity=0.045 Sum_probs=177.3
Q ss_pred CCCceEEEEEEEcc-CCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcCh--hHHHHHHhcCcEEEEEcccCC
Q 004766 446 RSEFHVHQVFVPSK-DGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSV--SRTILMRHLGAVFCIANIRGG 522 (732)
Q Consensus 446 ~~~~~~~~~~~~s~-dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~--~~~~~l~~~G~~v~~~~~rG~ 522 (732)
...+.++.+.+.|+ .| .+|++.|+.| .+++|+|+++||+.+......|.. ....++++.|+++++++..+.
T Consensus 4 ~~~~~v~~~~~~s~~~~-r~~~~~v~~p-----~~~~Pvl~llhG~~~~~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 77 (288)
T d1sfra_ 4 RPGLPVEYLQVPSPSMG-RDIKVQFQSG-----GANSPALYLLDGLRAQDDFSGWDINTPAFEWYDQSGLSVVMPVGGQS 77 (288)
T ss_dssp STTCCCEEEEEEETTTT-EEEEEEEECC-----STTBCEEEEECCTTCCSSSCHHHHHCCHHHHHTTSSCEEEEECCCTT
T ss_pred CCCCEEEEEEEECCCCC-cEEEEEEeCC-----CCCceEEEEcCCCCCCCcchhhhhhccHHHHHHhCCCEEEEeccCCC
Confidence 33455677777765 67 8999887765 368999999999765433333321 246788889999999999877
Q ss_pred CCCchhHHhcc-cccCCccHHHHH--HHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCccccc
Q 004766 523 GEYGEEWHKGG-ALAKKQNCFDDF--ISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDML 599 (732)
Q Consensus 523 g~~g~~~~~~~-~~~~~~~~~~D~--~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~ 599 (732)
+.++..+.... ....+...++++ .+.+.+|.++..+|++|++|+|+|+||++++.++.++||+|+++++.+|.++..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~i~~~~~~d~~r~~i~G~S~GG~~A~~~a~~~pd~f~av~~~Sg~~~~~ 157 (288)
T d1sfra_ 78 SFYSDWYQPACGKAGCQTYKWETFLTSELPGWLQANRHVKPTGSAVVGLSMAASSALTLAIYHPQQFVYAGAMSGLLDPS 157 (288)
T ss_dssp CTTCBCSSCEEETTEEECCBHHHHHHTHHHHHHHHHHCBCSSSEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCSCTT
T ss_pred CCCccccCcccccccccchhHHHHHHHHhHHHHHHhcCCCCCceEEEEEccHHHHHHHHHHhccccccEEEEecCccccc
Confidence 65554333221 111112223443 356788888878999999999999999999999999999999999999998765
Q ss_pred ccccCC---------CCCccccccCCCCCHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCc-----
Q 004766 600 RYHKFT---------IGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVP----- 665 (732)
Q Consensus 600 ~~~~~~---------~~~~~~~~~g~p~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~----- 665 (732)
...... ........+|.+..+ .+.+++|+.++.... ...+++++.+|..|..++.
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----~~~~~~p~~~~~~~~-------~~~~~~~~~~G~~d~~~~~~~~~~ 226 (288)
T d1sfra_ 158 QAMGPTLIGLAMGDAGGYKASDMWGPKEDP----AWQRNDPLLNVGKLI-------ANNTRVWVYCGNGKPSDLGGNNLP 226 (288)
T ss_dssp STTHHHHHHHHHHHTTSCCHHHHHCSTTST----HHHHSCTTTTHHHHH-------HHTCEEEEECCCSCCBTTBCCSHH
T ss_pred ccccchhhhhhhhhcccccHhhhcCCcchh----hhHhcCHHHHHHHhh-------hcCCeEEEEeCCCCCCCccccccc
Confidence 332100 000011123443332 346778888775421 1357899999999988875
Q ss_pred ---------hHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeCCC-CCCCCCchHHHHHHHHHHHHHHHHHhCCCc
Q 004766 666 ---------LHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKA-GHGVGLPTQKMIDEAADRYGFMAKMLGASW 730 (732)
Q Consensus 666 ---------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-gH~~~~~~~~~~~~~~~~~~fl~~~l~~~~ 730 (732)
.+++++.++|+++ |.+..+.+++++ +|.... +.+.+.+.+.||.+.||..+
T Consensus 227 ~~~~e~~~~~~~~~l~~~l~~~----------g~~~~~~~~~~~G~H~w~~----w~~~l~~~l~~l~~alg~~~ 287 (288)
T d1sfra_ 227 AKFLEGFVRTSNIKFQDAYNAG----------GGHNGVFDFPDSGTHSWEY----WGAQLNAMKPDLQRALGATP 287 (288)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT----------TCCSEEEECCSCCCSSHHH----HHHHHHHTHHHHHHHHTCCC
T ss_pred cchhHHHHHHHHHHHHHHHHHC----------CCCeEEEEECCCCccChhH----HHHHHHHHHHHHHHhcCCCC
Confidence 5688999999988 899998888875 596421 23566678999999999764
|
| >d2h1ia1 c.69.1.14 (A:1-202) Carboxylesterase {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/thioesterase 1 domain: Carboxylesterase species: Bacillus cereus [TaxId: 1396]
Probab=99.78 E-value=4.2e-18 Score=162.56 Aligned_cols=192 Identities=12% Similarity=0.033 Sum_probs=137.3
Q ss_pred EEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcc-cccC----CccHHH
Q 004766 469 IVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGG-ALAK----KQNCFD 543 (732)
Q Consensus 469 ~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~-~~~~----~~~~~~ 543 (732)
++.|.. +++.|+||++||+.+.. ..|. .+...+. .++.|+.++....+..+..|.... .... .....+
T Consensus 5 i~~~~~---~~~~P~vi~lHG~g~~~--~~~~-~~~~~l~-~~~~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (202)
T d2h1ia1 5 VFQKGK---DTSKPVLLLLHGTGGNE--LDLL-PLAEIVD-SEASVLSVRGNVLENGMPRFFRRLAEGIFDEEDLIFRTK 77 (202)
T ss_dssp EEECCS---CTTSCEEEEECCTTCCT--TTTH-HHHHHHH-TTSCEEEECCSEEETTEEESSCEEETTEECHHHHHHHHH
T ss_pred cCCCCC---CCCCCEEEEECCCCCCH--HHHH-HHHHHhc-cCCceeeecccccCCCCccccccCCCCCCchHHHHHHHH
Confidence 455543 46789999999975543 2333 3456677 788888887643333222221111 0000 112356
Q ss_pred HHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCcccccccccCCCCCccccccCCCCCHHHH
Q 004766 544 DFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHAWVSDFGCSEEEEEF 623 (732)
Q Consensus 544 D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~~~~~~~g~p~~~~~~ 623 (732)
++...++++.++..+|++||+++|+|+||.+++.++.++|+.++++++..|.+...
T Consensus 78 ~~~~~i~~~~~~~~~d~~~i~~~G~S~Gg~~a~~la~~~~~~~~~~~~~~~~~~~~------------------------ 133 (202)
T d2h1ia1 78 ELNEFLDEAAKEYKFDRNNIVAIGYSNGANIAASLLFHYENALKGAVLHHPMVPRR------------------------ 133 (202)
T ss_dssp HHHHHHHHHHHHTTCCTTCEEEEEETHHHHHHHHHHHHCTTSCSEEEEESCCCSCS------------------------
T ss_pred HHHHHHHHHHHhccccccceeeecccccchHHHHHHHhccccccceeeecCCCCcc------------------------
Confidence 67777888888888999999999999999999999999999999999888754210
Q ss_pred HHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeCCCCCC
Q 004766 624 YWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHG 703 (732)
Q Consensus 624 ~~~~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~ 703 (732)
+..... ...+|++++||.+|++||+.++.+++++|+++ |.++++++|++ ||.
T Consensus 134 -------~~~~~~----------~~~~~~~i~~G~~D~~vp~~~~~~~~~~l~~~----------g~~~~~~~~~g-gH~ 185 (202)
T d2h1ia1 134 -------GMQLAN----------LAGKSVFIAAGTNDPICSSAESEELKVLLENA----------NANVTMHWENR-GHQ 185 (202)
T ss_dssp -------SCCCCC----------CTTCEEEEEEESSCSSSCHHHHHHHHHHHHTT----------TCEEEEEEESS-TTS
T ss_pred -------cccccc----------cccchhhcccccCCCccCHHHHHHHHHHHHHC----------CCCEEEEEECC-CCc
Confidence 001111 15679999999999999999999999999988 89999999986 898
Q ss_pred CCCchHHHHHHHHHHHHHHHHH
Q 004766 704 VGLPTQKMIDEAADRYGFMAKM 725 (732)
Q Consensus 704 ~~~~~~~~~~~~~~~~~fl~~~ 725 (732)
+.. +....+.+||.+.
T Consensus 186 ~~~------~~~~~~~~wl~k~ 201 (202)
T d2h1ia1 186 LTM------GEVEKAKEWYDKA 201 (202)
T ss_dssp CCH------HHHHHHHHHHHHH
T ss_pred CCH------HHHHHHHHHHHHh
Confidence 742 3345678899875
|
| >d2b9va2 c.69.1.21 (A:50-434) Alpha-amino acid ester hydrolase {Acetobacter pasteurianus [TaxId: 438]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: Alpha-amino acid ester hydrolase species: Acetobacter pasteurianus [TaxId: 438]
Probab=99.78 E-value=6.2e-18 Score=178.16 Aligned_cols=151 Identities=18% Similarity=0.186 Sum_probs=118.4
Q ss_pred CCCceEEEEEEEccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCC----ccCCCCcC-----hhHHHHHHhcCcEEEE
Q 004766 446 RSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFN----ISVTPSFS-----VSRTILMRHLGAVFCI 516 (732)
Q Consensus 446 ~~~~~~~~~~~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~----~~~~~~~~-----~~~~~~l~~~G~~v~~ 516 (732)
...+..+.|.++.+|| ++|.+.|+.|++ .++.|+||..|+... ......+. .....+++++||+|+.
T Consensus 23 ~~~~~~~~v~ipmrDG-~~L~~~v~~P~~---~~~~P~il~~tpY~~~~~~~~~~~~~~~~~~~~~~~~~~a~~Gy~vv~ 98 (385)
T d2b9va2 23 QRDYIKREVMVPMRDG-VKLYTVIVIPKN---ARNAPILLTRTPYNAKGRANRVPNALTMREVLPQGDDVFVEGGYIRVF 98 (385)
T ss_dssp CCSEEEEEEEEECTTS-CEEEEEEEEETT---CCSEEEEEEEESSCHHHHTCSSTTCSSHHHHSCGGGHHHHHTTCEEEE
T ss_pred CCCCeEeEEEEECCCC-CEEEEEEEEcCC---CCceeEEEEEccCCCCCccccCCcccccccccchHHHHHHhCCcEEEE
Confidence 3456788899999999 999999999986 478999998754311 11111111 1123456669999999
Q ss_pred EcccCCCCCchhHHhccc-----ccCCccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEE
Q 004766 517 ANIRGGGEYGEEWHKGGA-----LAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALA 591 (732)
Q Consensus 517 ~~~rG~g~~g~~~~~~~~-----~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~ 591 (732)
+|+||.|+++..|..... ........+|+.++++||.++...+++||+++|+|+||+++++++.+.|+.++|+|.
T Consensus 99 ~d~RG~g~S~G~~~~~~~~~~~~~~~~~~e~~D~~~~i~w~~~q~~~~~g~vg~~G~SygG~~~~~~a~~~~~~l~a~~~ 178 (385)
T d2b9va2 99 QDIRGKYGSQGDYVMTRPPHGPLNPTKTDETTDAWDTVDWLVHNVPESNGRVGMTGSSYEGFTVVMALLDPHPALKVAAP 178 (385)
T ss_dssp EECTTSTTCCSCCCTTCCCSBTTBCSSCCHHHHHHHHHHHHHHSCTTEEEEEEEEEEEHHHHHHHHHHTSCCTTEEEEEE
T ss_pred EcCCcccCCCCceeeccccccccccchhhHHHHHHHHHHHHHhccCccccceeeccccHHHHHHHHHHhccCCcceEEEE
Confidence 999999998887765432 234456789999999999999877789999999999999999999999999999999
Q ss_pred cCCcccccc
Q 004766 592 HVGVMDMLR 600 (732)
Q Consensus 592 ~~p~~d~~~ 600 (732)
.++..|...
T Consensus 179 ~~~~~d~~~ 187 (385)
T d2b9va2 179 ESPMVDGWM 187 (385)
T ss_dssp EEECCCTTT
T ss_pred ecccccccc
Confidence 999887654
|
| >d2gzsa1 c.69.1.38 (A:41-305) Enterobactin and salmochelin hydrolase IroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: IroE-like domain: Enterobactin and salmochelin hydrolase IroE species: Escherichia coli [TaxId: 562]
Probab=99.75 E-value=5e-18 Score=169.55 Aligned_cols=211 Identities=11% Similarity=0.047 Sum_probs=149.9
Q ss_pred ceEEEEEEEccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchh
Q 004766 449 FHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEE 528 (732)
Q Consensus 449 ~~~~~~~~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~ 528 (732)
+..+.+.+.+.||..++.++|+.|++..+++++|+|+++||+........ ....++...+|++++++++|+...++..
T Consensus 11 ~~~~~~~~~s~dg~~~~~~~v~~P~~~~~~~~yPvi~~lhG~~~~~~~~~--~~~~~~~~~~~~~vV~v~~~~~~~~~~~ 88 (265)
T d2gzsa1 11 YHFSATSFDSVDGTRHYRVWTAVPNTTAPASGYPILYMLDGNAVMDRLDD--ELLKQLSEKTPPVIVAVGYQTNLPFDLN 88 (265)
T ss_dssp EEEEEEEEECTTSSCEEEEEEEEESSCCCTTCEEEEEESSHHHHHHHCCH--HHHHHHTTSCCCEEEEEEESSSSSCCHH
T ss_pred ceeEEEEEEcCCCCEEEEEEEEcCCCCCCCCCceEEEEecCcchhhhHHH--HHHHHHHhcCCCeEEEecCCCCCcCccc
Confidence 46788899999984579999999999888899999999999753321111 1123556668999999999999887654
Q ss_pred HHhccc------------------ccCCccHHHHHH--HHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeE
Q 004766 529 WHKGGA------------------LAKKQNCFDDFI--SASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGC 588 (732)
Q Consensus 529 ~~~~~~------------------~~~~~~~~~D~~--~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a 588 (732)
...... ...+...+.++. .++.++.++..+|+++++|+|+|+||++++.++.+ ++.|.+
T Consensus 89 ~r~~d~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~d~~~~~i~G~S~GG~~a~~~~~~-~~~f~~ 167 (265)
T d2gzsa1 89 SRAYDYTPAAESRKTDLHSGRFSRKSGGSNNFRQLLETRIAPKVEQGLNIDRQRRGLWGHSYGGLFVLDSWLS-SSYFRS 167 (265)
T ss_dssp HHHHHTCCGGGGTTCSCC-----CCCCCHHHHHHHHHHTHHHHHTTTSCEEEEEEEEEEETHHHHHHHHHHHH-CSSCSE
T ss_pred ccccccccccCcccccccccchhccccchHHHHHHHHHHHHHHHHHhcCCCcCceEEEeccHHHHHHHHHHHc-CcccCE
Confidence 321110 001112233332 24556666667899999999999999999998876 678888
Q ss_pred EEEcCCcccccccccCCCCCccccccCCCCCHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEeeCC--------C
Q 004766 589 ALAHVGVMDMLRYHKFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADH--------D 660 (732)
Q Consensus 589 ~v~~~p~~d~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~--------D 660 (732)
+++.+|...+ .++.. +...+++..... ..+|+++.+|.. |
T Consensus 168 ~~a~s~~~~~-------------------~~~~~---~~~~~~~~~~~~----------~~~~~~~~~g~~~~~~~~~~d 215 (265)
T d2gzsa1 168 YYSASPSLGR-------------------GYDAL---LSRVTAVEPLQF----------CTKHLAIMEGSATQGDNRETH 215 (265)
T ss_dssp EEEESGGGST-------------------THHHH---HHHHHTSCTTTT----------TTCEEEEEECCC---------
T ss_pred EEEECCcccc-------------------cchhh---hhcccccccccc----------CCCcEEEEcCCcccccccccc
Confidence 8888775422 11122 333345444444 567899998877 7
Q ss_pred CCCCchHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeCCCCCCC
Q 004766 661 DRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGV 704 (732)
Q Consensus 661 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~ 704 (732)
.+|++.++.+++++|+++ |+++++.+||+++|+.
T Consensus 216 ~~~~~~~~~~l~~~L~~~----------g~~~~~~~~pG~~Hg~ 249 (265)
T d2gzsa1 216 AVGVLSKIHTTLTILKDK----------GVNAVFWDFPNLGHGP 249 (265)
T ss_dssp --CHHHHHHHHHHHHHHT----------TCCEEEEECTTCCHHH
T ss_pred cchhHHHHHHHHHHHHHC----------CCCEEEEEcCCCCcch
Confidence 889999999999999998 9999999999999963
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.74 E-value=2.9e-15 Score=149.15 Aligned_cols=260 Identities=17% Similarity=0.118 Sum_probs=174.5
Q ss_pred EEEEEEEc-CCCCeeEEEEEeCCCCCceEEeCCCCcCCCCCEEEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCce
Q 004766 92 KYFYFHNT-GLQPQSVLYVQDSLDAKAKVLLDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIV 170 (732)
Q Consensus 92 ~~~~~~~~-~~~~~~~l~~r~~~~~~~~~l~D~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~ 170 (732)
++.|..+. +++..+.||+.+..+...++|++...- +..++|||||++|||+....+. ..+++++..++..
T Consensus 5 ~iay~~~~~~~~~~~~l~i~d~dG~~~~~l~~~~~~-------~~sP~wSPDGk~IAf~~~~~~~--~~~~~~~~~~~~~ 75 (269)
T d2hqsa1 5 RIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQP-------LMSPAWSPDGSKLAYVTFESGR--SALVIQTLANGAV 75 (269)
T ss_dssp EEEEEEECSSSSCCEEEEEEETTSCSCEEEEEESSC-------EEEEEECTTSSEEEEEECTTSS--CEEEEEETTTCCE
T ss_pred eEEEEEEeCCCCceEEEEEEcCCCCCcEEEecCCCc-------eeeeEECCCCCEEEEEEeeccC--cceeeeecccCce
Confidence 56676554 444445799998766677777754322 4589999999999999876665 5789999998885
Q ss_pred ecccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEE
Q 004766 171 EADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHV 250 (732)
Q Consensus 171 ~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~ 250 (732)
...+........+.|||||+.|++..... ....+......... ... ..........+.+
T Consensus 76 ~~~~~~~~~~~~~~~spdg~~i~~~~~~~----------------~~~~~~~~~~~~~~----~~~-~~~~~~~~~~~~~ 134 (269)
T d2hqsa1 76 RQVASFPRHNGAPAFSPDGSKLAFALSKT----------------GSLNLYVMDLASGQ----IRQ-VTDGRSNNTEPTW 134 (269)
T ss_dssp EEEECCSSCEEEEEECTTSSEEEEEECTT----------------SSCEEEEEETTTCC----EEE-CCCCSSCEEEEEE
T ss_pred eEEeeeecccccceecCCCCeeeEeeecC----------------Cccceeeccccccc----cee-eeecccccccccc
Confidence 44333322346789999999999987533 11233333333221 111 1112223456789
Q ss_pred ecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCCCCcEEeeeccc-ceEEEEEecCCeEEEEeCCCCCCceE
Q 004766 251 TEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFD-AQYEVIANDDTVFTFLTNKDAPKYKI 329 (732)
Q Consensus 251 SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~s~dg~~l~~~s~~~~~~~~l 329 (732)
+++++.+++...... ...+++.+++++. ...++.... .....|+|+|+.+++.++.++ ...+
T Consensus 135 ~~~~~~~~~~~~~~g--~~~i~~~~~~~~~--------------~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~-~~~i 197 (269)
T d2hqsa1 135 FPDSQNLAFTSDQAG--RPQVYKVNINGGA--------------PQRITWEGSQNQDADVSSDGKFMVMVSSNGG-QQHI 197 (269)
T ss_dssp CTTSSEEEEEECTTS--SCEEEEEETTSSC--------------CEECCCSSSEEEEEEECTTSSEEEEEEECSS-CEEE
T ss_pred ccccccceecccccC--CceEeeeeccccc--------------ceeeecccccccccccccccceeEEEeecCC-ceee
Confidence 999999988876554 5679999988743 222332221 223469999999999887654 5679
Q ss_pred EEEeCCCCCCceEeccCCCCCceeEEEEecC-CEEEEEEecCCeeEEEEEeCCCCceeeecccccceeeEeeccc
Q 004766 330 IRVDLKEPNDWFEVIPEAERDVLESATAVNL-NQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARR 403 (732)
Q Consensus 330 ~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~-~~l~~~~~~~g~~~l~~~d~~~g~~~~~l~~~~g~v~~~~~s~ 403 (732)
+.++..++. ..++... .......|++| ++|++....++..+|++++++ |...++|+...+.+..++++|
T Consensus 198 ~~~~~~~~~--~~~~~~~--~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~d-g~~~~~lt~~~g~~~~p~WSP 267 (269)
T d2hqsa1 198 AKQDLATGG--VQVLSST--FLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDGQVKFPAWSP 267 (269)
T ss_dssp EEEETTTCC--EEECCCS--SSCEEEEECTTSSEEEEEEEETTEEEEEEEETT-SCCEEECCCSSSEEEEEEECC
T ss_pred eEeeccccc--ceEeecC--ccccceEECCCCCEEEEEEcCCCCcEEEEEECC-CCCEEEEeCCCCcEEeEEeCC
Confidence 999987765 4444443 23456788875 678888888888999999998 444477876677777777776
|
| >d3c8da2 c.69.1.2 (A:151-396) Enterochelin esterase, catalytic domain {Shigella flexneri 2a str. 2457T [TaxId: 198215]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Enterochelin esterase, catalytic domain species: Shigella flexneri 2a str. 2457T [TaxId: 198215]
Probab=99.74 E-value=4.2e-18 Score=167.99 Aligned_cols=227 Identities=14% Similarity=0.044 Sum_probs=144.7
Q ss_pred eEEEEEEEcc-CCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchh
Q 004766 450 HVHQVFVPSK-DGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEE 528 (732)
Q Consensus 450 ~~~~~~~~s~-dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~ 528 (732)
.++++.+.|. .| .+++++++.|++.. ++++|+||+.||+....... .......+++ +|....++.+...++.+..
T Consensus 14 ~~~~~~~~S~~lg-~~~~~~v~~P~~~~-~~~~Pvvv~lhG~~~~~~~~-~~~~l~~l~~-~~~~~~~i~v~~~~~~~~~ 89 (246)
T d3c8da2 14 PAKEIIWKSERLK-NSRRVWIFTTGDVT-AEERPLAVLLDGEFWAQSMP-VWPVLTSLTH-RQQLPPAVYVLIDAIDTTH 89 (246)
T ss_dssp CCEEEEEEETTTT-EEEEEEEEEC------CCCCEEEESSHHHHHHTSC-CHHHHHHHHH-TTSSCSCEEEEECCCSHHH
T ss_pred CcEEEEEECCCCC-CEEEEEEEECCCCC-CCCCCEEEEeCCcchhccCc-HHHHHHHHHH-hCCCCceEEeecccccccc
Confidence 4577778775 57 89999999999875 46899999999975443222 2223345555 6643222222222222222
Q ss_pred HHhcccccCCccHHHHHH-HH-HHHHHHc--CCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCcccccccccC
Q 004766 529 WHKGGALAKKQNCFDDFI-SA-SEYLISA--GYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKF 604 (732)
Q Consensus 529 ~~~~~~~~~~~~~~~D~~-~~-~~~l~~~--~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~ 604 (732)
+... ......+.+++ .. +.++.+. ..+|+++++|+|+|+||++++.++.++|++|+++++.+|..++....
T Consensus 90 ~~~~---~~~~~~~~~~~~~el~~~v~~~~~~~~d~~~~~i~G~S~GG~~al~~~~~~P~~F~a~~~~sg~~~~~~~~-- 164 (246)
T d3c8da2 90 RAHE---LPCNADFWLAVQQELLPLVKVIAPFSDRADRTVVAGQSFGGLSALYAGLHWPERFGCVLSQSGSYWWPHRG-- 164 (246)
T ss_dssp HHHH---SSSCHHHHHHHHHTHHHHHHHHSCCCCCGGGCEEEEETHHHHHHHHHHHHCTTTCCEEEEESCCTTTTCTT--
T ss_pred cccc---cCccHHHHHHHHHHhhhHHHHhcccccCccceEEEecCchhHHHhhhhccCCchhcEEEcCCcccccccCC--
Confidence 2111 11112233332 22 2223332 34689999999999999999999999999999999999977653221
Q ss_pred CCCCccccccCCCCCHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhcCCCC
Q 004766 605 TIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLE 684 (732)
Q Consensus 605 ~~~~~~~~~~g~p~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~ 684 (732)
+..... ..+.++...... ..+|+++.+|..|+++ +.++++|+++|+++
T Consensus 165 -----------~~~~~~----~~~~~~~~~~~~----------~~~~~~l~~G~~D~~~-~~~~~~l~~~L~~~------ 212 (246)
T d3c8da2 165 -----------GQQEGV----LLEKLKAGEVSA----------EGLRIVLEAGIREPMI-MRANQALYAQLHPI------ 212 (246)
T ss_dssp -----------SSSCCH----HHHHHHTTSSCC----------CSCEEEEEEESSCHHH-HHHHHHHHHHTGGG------
T ss_pred -----------ccchHH----HHHHhhhhhhhc----------cCCCeEEEecCCCcch-hHHHHHHHHHHHHC------
Confidence 111111 122345555544 5789999999999877 57899999999998
Q ss_pred CCCCCCCEEEEEeCCCCCCCCCchHHHHHHHHHHHHHHHHHh
Q 004766 685 NSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKML 726 (732)
Q Consensus 685 ~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l 726 (732)
|.++.+.++++ ||... -+.+.+.+.+.||.+.|
T Consensus 213 ----g~~~~~~~~~G-gH~~~----~W~~~l~~~l~~l~~~~ 245 (246)
T d3c8da2 213 ----KESIFWRQVDG-GHDAL----CWRGGLMQGLIDLWQPL 245 (246)
T ss_dssp ----TTSEEEEEESC-CSCHH----HHHHHHHHHHHHHHGGG
T ss_pred ----CCCEEEEEeCC-CCChH----HHHHHHHHHHHHHHHhh
Confidence 99999999987 89653 23456666777776654
|
| >d1vkha_ c.69.1.32 (A:) Putative serine hydrolase Ydr428c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Putative serine hydrolase Ydr428c domain: Putative serine hydrolase Ydr428c species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.73 E-value=7e-18 Score=168.16 Aligned_cols=190 Identities=12% Similarity=0.039 Sum_probs=127.2
Q ss_pred CCccEEEEEcCCCCccCC---CCcCh---hHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCccHHHHHHHHHHHH
Q 004766 479 GSHPCLLYGYGGFNISVT---PSFSV---SRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYL 552 (732)
Q Consensus 479 ~~~P~vv~~hG~~~~~~~---~~~~~---~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l 552 (732)
++.|+|||+|||...... ..|.. .+..++.++||.|+.+|||++++. .....++|+.++++|+
T Consensus 29 ~~~~~vv~iHGGg~~~~~~~~~~~~~~~~~l~~~~~~~g~~v~~~dYrl~p~~-----------~~~~~~~d~~~~~~~l 97 (263)
T d1vkha_ 29 NTREAVIYIHGGAWNDPENTPNDFNQLANTIKSMDTESTVCQYSIEYRLSPEI-----------TNPRNLYDAVSNITRL 97 (263)
T ss_dssp TCCEEEEEECCSTTTCTTCCGGGGHHHHHHHHHHCTTCCEEEEEECCCCTTTS-----------CTTHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCccCCCCCcchHHHHHHHHHHHHHhCCeEEEEeccccCcch-----------hhhHHHHhhhhhhhcc
Confidence 577999999998432211 12221 233455568999999999988763 1335689999999999
Q ss_pred HHcCCCCCCcEEEEecChhHHHHHHHHhhCCC-----------------eeeEEEEcCCcccccccccCCCCCcc-c-cc
Q 004766 553 ISAGYTQSRKLCIEGGSNGGLLVGACINQRPD-----------------LFGCALAHVGVMDMLRYHKFTIGHAW-V-SD 613 (732)
Q Consensus 553 ~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~-----------------~f~a~v~~~p~~d~~~~~~~~~~~~~-~-~~ 613 (732)
.++ .++++|+|+|+|+||.+++.++...++ ...+.+...++.++...........+ . ..
T Consensus 98 ~~~--~~~~~i~l~G~S~Gg~lal~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (263)
T d1vkha_ 98 VKE--KGLTNINMVGHSVGATFIWQILAALKDPQEKMSEAQLQMLGLLQIVKRVFLLDGIYSLKELLIEYPEYDCFTRLA 175 (263)
T ss_dssp HHH--HTCCCEEEEEETHHHHHHHHHHTGGGSCTTTCCHHHHHHHHHHTTEEEEEEESCCCCHHHHHHHCGGGHHHHHHH
T ss_pred ccc--ccccceeeeccCcHHHHHHHHHHhccCccccccccccccccccccccccccccccccchhhhhhccccchhhhcc
Confidence 987 467899999999999999988875443 34555666666555432210000000 0 11
Q ss_pred cCC-CC----CHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhcCCCCCCCC
Q 004766 614 FGC-SE----EEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQ 688 (732)
Q Consensus 614 ~g~-p~----~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~ 688 (732)
++. +. ..... . . .....+.+ ..+|+||+||.+|.+||+.++.+|+++|++.
T Consensus 176 ~~~~~~~~~~~~~~~--~-~-~~~~~~~~----------~~~P~lii~G~~D~~vp~~~s~~l~~~L~~~---------- 231 (263)
T d1vkha_ 176 FPDGIQMYEEEPSRV--M-P-YVKKALSR----------FSIDMHLVHSYSDELLTLRQTNCLISCLQDY---------- 231 (263)
T ss_dssp CTTCGGGCCCCHHHH--H-H-HHHHHHHH----------HTCEEEEEEETTCSSCCTHHHHHHHHHHHHT----------
T ss_pred ccccccccccccccc--C-c-cccccccc----------cCCCeeeeecCCCcccCHHHHHHHHHHHHHC----------
Confidence 111 10 00000 0 0 01111222 5789999999999999999999999999998
Q ss_pred CCCEEEEEeCCCCCCCC
Q 004766 689 TNPIIGRIERKAGHGVG 705 (732)
Q Consensus 689 ~~~~~~~~~~~~gH~~~ 705 (732)
|+++++.++++++|...
T Consensus 232 g~~~~~~~~~~~~H~~~ 248 (263)
T d1vkha_ 232 QLSFKLYLDDLGLHNDV 248 (263)
T ss_dssp TCCEEEEEECCCSGGGG
T ss_pred CCCEEEEEECCCCchhh
Confidence 99999999999999653
|
| >d1jjfa_ c.69.1.2 (A:) Feruloyl esterase domain of the cellulosomal xylanase z {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Feruloyl esterase domain of the cellulosomal xylanase z species: Clostridium thermocellum [TaxId: 1515]
Probab=99.73 E-value=1.7e-17 Score=164.59 Aligned_cols=202 Identities=14% Similarity=-0.012 Sum_probs=133.1
Q ss_pred ceEEEEEEEcc-CCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcCh----hHHHHHHhcC----cEEEEEcc
Q 004766 449 FHVHQVFVPSK-DGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSV----SRTILMRHLG----AVFCIANI 519 (732)
Q Consensus 449 ~~~~~~~~~s~-dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~----~~~~~l~~~G----~~v~~~~~ 519 (732)
-.++.+.+.|. +| ++++++|+.|+++.+++++|+|+++||+.+......... .........+ +.+...+.
T Consensus 20 g~~~~~~~~S~~~g-~~~~~~v~lP~~y~~~~~~Pvvv~lHG~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (255)
T d1jjfa_ 20 GQVVNISYFSTATN-STRPARVYLPPGYSKDKKYSVLYLLHGIGGSENDWFEGGGRANVIADNLIAEGKIKPLIIVTPNT 98 (255)
T ss_dssp CEEEEEEEEETTTT-EEEEEEEEECTTCCTTSCBCEEEEECCTTCCTTTTTTTTTCHHHHHHHHHHTTSSCCCEEEEECC
T ss_pred eEEEEEEEEecCCC-CEEEEEEEeCCCCCCCCCCcEEEEEecCCCChHHhhhhhHHHHHHHHHHHhhccCCcceeeeccc
Confidence 35677778764 78 999999999999888899999999999876644332111 1111222133 33333333
Q ss_pred cCCCCCchhHHhcccccCCccH-HHHHHHHHHHHHHc--CCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCcc
Q 004766 520 RGGGEYGEEWHKGGALAKKQNC-FDDFISASEYLISA--GYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVM 596 (732)
Q Consensus 520 rG~g~~g~~~~~~~~~~~~~~~-~~D~~~~~~~l~~~--~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~ 596 (732)
.........+. .+. -..+.+++.++.++ ..+|++++++.|+|+||+++..++.++|++|+++++.+|..
T Consensus 99 ~~~~~~~~~~~--------~~~~~~~~~~li~~i~~~~~~~~d~~~i~i~G~S~GG~~a~~~a~~~Pd~F~~v~~~sg~~ 170 (255)
T d1jjfa_ 99 NAAGPGIADGY--------ENFTKDLLNSLIPYIESNYSVYTDREHRAIAGLSMGGGQSFNIGLTNLDKFAYIGPISAAP 170 (255)
T ss_dssp CCCCTTCSCHH--------HHHHHHHHHTHHHHHHHHSCBCCSGGGEEEEEETHHHHHHHHHHHTCTTTCSEEEEESCCT
T ss_pred ccccccccccc--------cchHHHHHHHHHHHHHHhhccccccceeEeeeccchhHHHHHHHHhCCCcccEEEEEccCc
Confidence 22211111110 111 12222334444443 45789999999999999999999999999999999988866
Q ss_pred cccccccCCCCCccccccCCCCCHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHH
Q 004766 597 DMLRYHKFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQ 676 (732)
Q Consensus 597 d~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~ 676 (732)
+...... .+ + .+...... ..+|++|.||++|..++ ...+++++|+
T Consensus 171 ~~~~~~~---------~~--~------------~~~~~~~~----------~~~~~~i~~G~~D~~~~--~~~~~~~~L~ 215 (255)
T d1jjfa_ 171 NTYPNER---------LF--P------------DGGKAARE----------KLKLLFIACGTNDSLIG--FGQRVHEYCV 215 (255)
T ss_dssp TSCCHHH---------HC--T------------TTTHHHHH----------HCSEEEEEEETTCTTHH--HHHHHHHHHH
T ss_pred CCccccc---------cc--c------------cHHHHhhc----------cCCcceEEeCCCCCCch--HHHHHHHHHH
Confidence 4321110 00 0 01111111 46799999999999877 4678999999
Q ss_pred HhhcCCCCCCCCCCCEEEEEeCCCCCCC
Q 004766 677 YVLCTSLENSPQTNPIIGRIERKAGHGV 704 (732)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~gH~~ 704 (732)
++ |.++++.+++++||..
T Consensus 216 ~~----------g~~~~~~~~~~ggH~~ 233 (255)
T d1jjfa_ 216 AN----------NINHVYWLIQGGGHDF 233 (255)
T ss_dssp HT----------TCCCEEEEETTCCSSH
T ss_pred HC----------CCCEEEEEECCCCcCH
Confidence 98 9999999999999975
|
| >d2i3da1 c.69.1.36 (A:2-219) Hypothetical protein Atu1826 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Atu1826-like domain: Hypothetical protein Atu1826 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.72 E-value=5e-16 Score=149.41 Aligned_cols=210 Identities=14% Similarity=0.102 Sum_probs=152.6
Q ss_pred EEEEEccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCC--CccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHH
Q 004766 453 QVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGF--NISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWH 530 (732)
Q Consensus 453 ~~~~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~--~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~ 530 (732)
+|++.+++| +|.+++..++ .+..|++|++||.+ |.++...........+.++||.++.+|+||-|..
T Consensus 2 ev~i~g~~G--~Le~~~~~~~----~~~~~~~l~~Hp~p~~GG~~~~~~~~~~a~~l~~~G~~~lrfn~RG~g~S----- 70 (218)
T d2i3da1 2 EVIFNGPAG--RLEGRYQPSK----EKSAPIAIILHPHPQFGGTMNNQIVYQLFYLFQKRGFTTLRFNFRSIGRS----- 70 (218)
T ss_dssp EEEEEETTE--EEEEEEECCS----STTCCEEEEECCCGGGTCCTTSHHHHHHHHHHHHTTCEEEEECCTTSTTC-----
T ss_pred cEEEeCCCc--cEEEEEeCCC----CCCCCEEEEECCCcCcCCcCCcHHHHHHHHHHHhcCeeEEEEecCccCCC-----
Confidence 367888888 7999865443 24679999999964 4433333333345566779999999999998864
Q ss_pred hcccccCCccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCcccccccccCCCCCcc
Q 004766 531 KGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHAW 610 (732)
Q Consensus 531 ~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~~~ 610 (732)
.+.........+|..++++|+..+...+ .++.+.|+|+||.+++.++.+.+.. .++++..|.....
T Consensus 71 -~G~~~~~~~e~~d~~aa~~~~~~~~~~~-~~~~~~g~S~G~~~a~~~a~~~~~~-~~~~~~~~~~~~~----------- 136 (218)
T d2i3da1 71 -QGEFDHGAGELSDAASALDWVQSLHPDS-KSCWVAGYSFGAWIGMQLLMRRPEI-EGFMSIAPQPNTY----------- 136 (218)
T ss_dssp -CSCCCSSHHHHHHHHHHHHHHHHHCTTC-CCEEEEEETHHHHHHHHHHHHCTTE-EEEEEESCCTTTS-----------
T ss_pred -ccccccchhHHHHHHHHHhhhhcccccc-cceeEEeeehHHHHHHHHHHhhccc-cceeecccccccc-----------
Confidence 3444556677899999999999886543 4789999999999999999886654 4444444432211
Q ss_pred ccccCCCCCHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhcCCCCCCCCCC
Q 004766 611 VSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTN 690 (732)
Q Consensus 611 ~~~~g~p~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~ 690 (732)
+...+.. ...|+|++||.+|..|+..+..+++++++.. .+.
T Consensus 137 --------------------~~~~~~~----------~~~p~l~i~g~~D~~~~~~~~~~l~~~~~~~---------~~~ 177 (218)
T d2i3da1 137 --------------------DFSFLAP----------CPSSGLIINGDADKVAPEKDVNGLVEKLKTQ---------KGI 177 (218)
T ss_dssp --------------------CCTTCTT----------CCSCEEEEEETTCSSSCHHHHHHHHHHHTTS---------TTC
T ss_pred --------------------chhhccc----------cCCCceeeecccceecChHHHHHHHHHHhhc---------cCC
Confidence 0011111 4569999999999999999999999998864 155
Q ss_pred CEEEEEeCCCCCCCCCchHHHHHHHHHHHHHHHHHhCCC
Q 004766 691 PIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLGAS 729 (732)
Q Consensus 691 ~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~~ 729 (732)
.+++.+.++++|+|..... +..+.+.+||.++|-..
T Consensus 178 ~~~~~vi~gAdHfF~g~~~---~l~~~v~~~l~~~l~~~ 213 (218)
T d2i3da1 178 LITHRTLPGANHFFNGKVD---ELMGECEDYLDRRLNGE 213 (218)
T ss_dssp CEEEEEETTCCTTCTTCHH---HHHHHHHHHHHHHHTTC
T ss_pred CccEEEeCCCCCCCcCCHH---HHHHHHHHHHHHhcCCC
Confidence 6899999999999975333 44456889999998654
|
| >d1fj2a_ c.69.1.14 (A:) Acyl protein thioesterase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/thioesterase 1 domain: Acyl protein thioesterase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.72 E-value=3.1e-17 Score=159.56 Aligned_cols=194 Identities=12% Similarity=0.045 Sum_probs=128.2
Q ss_pred CCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccC------CCCCchhHHhcccccC-CccH---HHHHHHH
Q 004766 479 GSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRG------GGEYGEEWHKGGALAK-KQNC---FDDFISA 548 (732)
Q Consensus 479 ~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG------~g~~g~~~~~~~~~~~-~~~~---~~D~~~~ 548 (732)
+..++||++||..+... .|.. ....+...|+.+++++.+. .+..+..|+....... .... +++....
T Consensus 19 ~~~~~VI~lHG~G~~~~--~~~~-~~~~l~~~~~~~v~p~Ap~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~i~~~~~~ 95 (229)
T d1fj2a_ 19 KATAAVIFLHGLGDTGH--GWAE-AFAGIRSSHIKYICPHAPVRPVTLNMNVAMPSWFDIIGLSPDSQEDESGIKQAAEN 95 (229)
T ss_dssp CCSEEEEEECCSSSCHH--HHHH-HHHTTCCTTEEEEECCCCEEEEGGGTTEEEECSSCBCCCSTTCCBCHHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHH--HHHH-HHHHhcCCCCEEEeCCCCCCccccCCCcccccccccccccccchhhhHHHHHHHHH
Confidence 45579999999654321 2222 2223344789999887532 2233445654322111 1111 3333333
Q ss_pred ----HHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCcccccccccCCCCCccccccCCCCCHHHHH
Q 004766 549 ----SEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHAWVSDFGCSEEEEEFY 624 (732)
Q Consensus 549 ----~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~~~~~~~g~p~~~~~~~ 624 (732)
++.+.+. .++++||+++|+|+||.+++.++.++|+.|+++|+.++.+.......
T Consensus 96 l~~li~~~~~~-~i~~~ri~l~GfS~Gg~~a~~~~~~~~~~~~gvi~~sg~lp~~~~~~--------------------- 153 (229)
T d1fj2a_ 96 IKALIDQEVKN-GIPSNRIILGGFSQGGALSLYTALTTQQKLAGVTALSCWLPLRASFP--------------------- 153 (229)
T ss_dssp HHHHHHHHHHT-TCCGGGEEEEEETHHHHHHHHHHTTCSSCCSEEEEESCCCTTGGGSC---------------------
T ss_pred HHHHhhhhhhc-CCCccceeeeecccchHHHHHHHHhhccccCcccccccccccccccc---------------------
Confidence 3333333 47899999999999999999999999999999998877542111000
Q ss_pred HHHhcCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeCCCCCCC
Q 004766 625 WLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGV 704 (732)
Q Consensus 625 ~~~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~ 704 (732)
.++.... ...+|+|++||.+|++||+.++.+.++.|++. ..+..+++++|++.||.+
T Consensus 154 ----~~~~~~~-----------~~~~Pvli~hG~~D~~vp~~~~~~~~~~L~~~--------~~~~~v~~~~~~g~gH~i 210 (229)
T d1fj2a_ 154 ----QGPIGGA-----------NRDISILQCHGDCDPLVPLMFGSLTVEKLKTL--------VNPANVTFKTYEGMMHSS 210 (229)
T ss_dssp ----SSCCCST-----------TTTCCEEEEEETTCSSSCHHHHHHHHHHHHHH--------SCGGGEEEEEETTCCSSC
T ss_pred ----ccccccc-----------cccCceeEEEcCCCCeeCHHHHHHHHHHHHhc--------CCCCceEEEEeCCCCCcc
Confidence 0111111 13579999999999999999999999999985 125689999999999987
Q ss_pred CCchHHHHHHHHHHHHHHHHHh
Q 004766 705 GLPTQKMIDEAADRYGFMAKML 726 (732)
Q Consensus 705 ~~~~~~~~~~~~~~~~fl~~~l 726 (732)
.. ++..++.+||.++|
T Consensus 211 ~~------~~~~~~~~wL~~~L 226 (229)
T d1fj2a_ 211 CQ------QEMMDVKQFIDKLL 226 (229)
T ss_dssp CH------HHHHHHHHHHHHHS
T ss_pred CH------HHHHHHHHHHHhHC
Confidence 42 34556889999987
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.71 E-value=3e-15 Score=162.26 Aligned_cols=304 Identities=11% Similarity=0.111 Sum_probs=180.4
Q ss_pred EEEEeCCCCCceEEeCCCCcCCCCCEEEEeEEECCCCcEEEEEEecc----CCceEEEEEEECCCCceecccccceeeee
Q 004766 107 LYVQDSLDAKAKVLLDPNTLSDDGTAALIKVSVSEDAKYLAYALSYS----GSDWATIKLMRIEDQIVEADALSWFKFSS 182 (732)
Q Consensus 107 l~~r~~~~~~~~~l~D~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~----G~e~~~i~v~dl~~g~~~~~~~~~~~~~~ 182 (732)
+++.+..+++.++|++...+... ...+..++|||||++|||..+.. .+...+++++|+++|+..+..........
T Consensus 38 ~~~~~~~t~~~~~~~~~~~~~~~-~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~~~l~~~~~~~~~ 116 (470)
T d2bgra1 38 ILVFNAEYGNSSVFLENSTFDEF-GHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEERIPNNTQW 116 (470)
T ss_dssp EEEEETTTCCEEEEECTTTTTTS-SSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCTTEEE
T ss_pred EEEEECCCCCEEEEEchhhhhhc-cCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCcccccccCCccccc
Confidence 66666667777888988777532 23467899999999999997532 13346899999999986554433333478
Q ss_pred EEEEeCCcEEEEEEecCCCCCCCCCCCCcccCCcccEEEEEECCCCCCCCeE-------EEecCC-------CCeeEEEe
Q 004766 183 IAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDIL-------CWKDPE-------HPKYIFSG 248 (732)
Q Consensus 183 ~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~-------v~~~~~-------~~~~~~~~ 248 (732)
++|||||+.|+|++. ..+|++++.++....++ ++.... .......+
T Consensus 117 ~~~SPDG~~ia~~~~--------------------~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~ 176 (470)
T d2bgra1 117 VTWSPVGHKLAYVWN--------------------NDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSAL 176 (470)
T ss_dssp EEECSSTTCEEEEET--------------------TEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCE
T ss_pred cccccCcceeeEeec--------------------ccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCcccc
Confidence 999999999999853 24777776655322111 111000 00111346
Q ss_pred EEecCCcEEEEEEecCCc-------------------------------ceEEEEEEeCCCCCCCcccc-----------
Q 004766 249 HVTEDGQYLVMCIEENCD-------------------------------PVNKVYYCDLSALPEGLEGF----------- 286 (732)
Q Consensus 249 ~~SpDg~~l~~~~~~~~~-------------------------------~~~~l~~~d~~~~~~~~~~~----------- 286 (732)
.|||||++|++...+... ....++++++.++.......
T Consensus 177 ~wSPDGk~ia~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 256 (470)
T d2bgra1 177 WWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASML 256 (470)
T ss_dssp EECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEEGGGCCSSSCCCEEEECCCHHHH
T ss_pred EECCCCCccceeEecCCcCceEEEEeeccCCCCCCeeeeeccccccccCCcceEEEEECCCcceeeeccccccCCccccC
Confidence 799999999987643220 12356666665532110000
Q ss_pred ----------cccCC---------CCC--cEEeee--c------------------------ccceEEEEEecCCeE-EE
Q 004766 287 ----------KKRDG---------LLP--FVKLID--G------------------------FDAQYEVIANDDTVF-TF 318 (732)
Q Consensus 287 ----------~~~~~---------~~~--~~~l~~--~------------------------~~~~~~~~s~dg~~l-~~ 318 (732)
+.... ... ...+.. . .......++++++.. ++
T Consensus 257 ~~~~~~~~~~w~~~~~~~~~~~~r~~~~~~~~~~~~d~~tg~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 336 (470)
T d2bgra1 257 IGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKI 336 (470)
T ss_dssp TSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEE
T ss_pred CCCceEEEEEEcCCCceeEEEeeccCCceEEEEEEecCCCCcEEEEEEEeeeeeeccceeecccCCCceeeecCCCcEEE
Confidence 00000 000 000000 0 000011345555554 44
Q ss_pred EeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecCCEEEEEEecCC----eeEEEEEeCCCCceeeeccc---
Q 004766 319 LTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDV----KYVLQIRDLKNGSLLHQLPI--- 391 (732)
Q Consensus 319 ~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~~l~~~~~~~g----~~~l~~~d~~~g~~~~~l~~--- 391 (732)
.+.+++ ..+||.++.+++. ...+..+. ..+..+...+++.+++.+...+ ..+||.++++++...+.|+.
T Consensus 337 ~s~~dg-~~~ly~~~~~g~~-~~~lt~g~--~~v~~~~~~d~~~iyf~a~~~~~~p~~~~ly~v~~~g~~~~~~lt~~~~ 412 (470)
T d2bgra1 337 ISNEEG-YRHICYFQIDKKD-CTFITKGT--WEVIGIEALTSDYLYYISNEYKGMPGGRNLYKIQLSDYTKVTCLSCELN 412 (470)
T ss_dssp EECTTS-CEEEEEEETTCSC-CEESCCSS--SCEEEEEEECSSEEEEEESCGGGCTTCBEEEEEETTCTTCEEESSTTTS
T ss_pred EeccCc-CceeEEEeccCCc-eeeeccCC--eeEEEEEEECCCEEEEEEecCCCCcceEEEEEEECCCCCceeEeccccc
Confidence 555544 5689999988766 45554433 4455554344478888776432 34799999985554455542
Q ss_pred -ccceeeEeecccCCcEEEEEEecCCCCceEEEEECCCCCCceEEEE
Q 004766 392 -EIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTETPEMKIFR 437 (732)
Q Consensus 392 -~~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~~~~~~~l~ 437 (732)
+.+.+..+++||||++++.+++++.+|. +..++..+++ .+++|.
T Consensus 413 ~~~~~~~s~~fSpdgky~~~~~s~~~~P~-~~l~~~~~g~-~v~~le 457 (470)
T d2bgra1 413 PERCQYYSVSFSKEAKYYQLRCSGPGLPL-YTLHSSVNDK-GLRVLE 457 (470)
T ss_dssp TTTBCBEEEEECTTSSEEEEEECSBSSCE-EEEEETTTTE-EEEEEE
T ss_pred CCCCCEEEEEECCCCCEEEEEecCCCCCe-EEEEECCCCC-EEEEEe
Confidence 2455678889999999999999999987 4567777775 345554
|
| >d3b5ea1 c.69.1.14 (A:7-215) Uncharacterized protein Mll8374 {Mesorhizobium loti [TaxId: 381]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/thioesterase 1 domain: Uncharacterized protein Mll8374 species: Mesorhizobium loti [TaxId: 381]
Probab=99.71 E-value=1.4e-16 Score=152.64 Aligned_cols=193 Identities=17% Similarity=0.106 Sum_probs=131.9
Q ss_pred eEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhccc-ccCC----
Q 004766 464 KIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGA-LAKK---- 538 (732)
Q Consensus 464 ~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~-~~~~---- 538 (732)
..|..+..+. .+..|+||++||..+... .|. .+...|. .++.+++++.+.....+..|..... ....
T Consensus 10 ~~~~~~~~~~----~~~~p~vv~lHG~g~~~~--~~~-~l~~~l~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (209)
T d3b5ea1 10 AFPYRLLGAG----KESRECLFLLHGSGVDET--TLV-PLARRIA-PTATLVAARGRIPQEDGFRWFERIDPTRFEQKSI 81 (209)
T ss_dssp SSCEEEESTT----SSCCCEEEEECCTTBCTT--TTH-HHHHHHC-TTSEEEEECCSEEETTEEESSCEEETTEECHHHH
T ss_pred cceeEecCCC----CCCCCEEEEEcCCCCCHH--HHH-HHHHHhc-cCcEEEeeccCcCcccCccccccCCccccchhhH
Confidence 3455554332 356899999999876532 332 3455666 6888888877543333333322111 0000
Q ss_pred ccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCcccccccccCCCCCccccccCCCC
Q 004766 539 QNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHAWVSDFGCSE 618 (732)
Q Consensus 539 ~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~~~~~~~g~p~ 618 (732)
....+++.+.++.+.++.-+|++||+|+|+|+||.+++.++.++|++|+++|+.+|.....
T Consensus 82 ~~~~~~l~~~l~~~~~~~~id~~ri~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~g~~~~~------------------- 142 (209)
T d3b5ea1 82 LAETAAFAAFTNEAAKRHGLNLDHATFLGYSNGANLVSSLMLLHPGIVRLAALLRPMPVLD------------------- 142 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCGGGEEEEEETHHHHHHHHHHHHSTTSCSEEEEESCCCCCS-------------------
T ss_pred HHHHHHHHHHHHHHHHHhCcccCCEEEEeeCChHHHHHHHHHhCCCcceEEEEeCCccccc-------------------
Confidence 1124556667777777766899999999999999999999999999999999888743210
Q ss_pred CHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeC
Q 004766 619 EEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIER 698 (732)
Q Consensus 619 ~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 698 (732)
..+. .. ...+|+|++||.+|+.|+ ..+.+++++|++. |.++++++++
T Consensus 143 ----------~~~~---~~---------~~~~p~~~~~G~~D~~~~-~~~~~~~~~l~~~----------G~~v~~~~~~ 189 (209)
T d3b5ea1 143 ----------HVPA---TD---------LAGIRTLIIAGAADETYG-PFVPALVTLLSRH----------GAEVDARIIP 189 (209)
T ss_dssp ----------SCCC---CC---------CTTCEEEEEEETTCTTTG-GGHHHHHHHHHHT----------TCEEEEEEES
T ss_pred ----------cccc---cc---------cccchheeeeccCCCccC-HHHHHHHHHHHHC----------CCCeEEEEEC
Confidence 0011 11 256799999999999987 5788999999988 9999999998
Q ss_pred CCCCCCCCchHHHHHHHHHHHHHHH
Q 004766 699 KAGHGVGLPTQKMIDEAADRYGFMA 723 (732)
Q Consensus 699 ~~gH~~~~~~~~~~~~~~~~~~fl~ 723 (732)
+ ||++.. ++.+.+.+||.
T Consensus 190 g-gH~i~~------~~~~~~~~wl~ 207 (209)
T d3b5ea1 190 S-GHDIGD------PDAAIVRQWLA 207 (209)
T ss_dssp C-CSCCCH------HHHHHHHHHHH
T ss_pred C-CCCCCH------HHHHHHHHHhC
Confidence 7 799852 22334557763
|
| >d1k8qa_ c.69.1.6 (A:) Gastric lipase {Dog (Canis familiaris) [TaxId: 9615]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Gastric lipase domain: Gastric lipase species: Dog (Canis familiaris) [TaxId: 9615]
Probab=99.67 E-value=1.6e-16 Score=166.57 Aligned_cols=140 Identities=16% Similarity=0.135 Sum_probs=97.0
Q ss_pred CceEEEEEEEccCCCeeEEEEEEE--cCCCCCCCCccEEEEEcCCCCccCCCCcC---hhHHHHHHhcCcEEEEEcccCC
Q 004766 448 EFHVHQVFVPSKDGSTKIPMFIVS--KKNIKLDGSHPCLLYGYGGFNISVTPSFS---VSRTILMRHLGAVFCIANIRGG 522 (732)
Q Consensus 448 ~~~~~~~~~~s~dG~~~i~~~~~~--p~~~~~~~~~P~vv~~hG~~~~~~~~~~~---~~~~~~l~~~G~~v~~~~~rG~ 522 (732)
.|..|+..+++.|| ..|.++-+. +......++.|+||++||.++++..+... ..+...|+++||.|+++|.||.
T Consensus 24 ~y~~e~h~v~t~DG-~~l~~~ri~~~~~~~~~~~~~~~vlllHG~~~~~~~~~~~~~~~sla~~L~~~Gy~V~~~D~rG~ 102 (377)
T d1k8qa_ 24 GYPAEEYEVVTEDG-YILGIDRIPYGRKNSENIGRRPVAFLQHGLLASATNWISNLPNNSLAFILADAGYDVWLGNSRGN 102 (377)
T ss_dssp TCCCEEEEEECTTS-EEEEEEEECSCSSCCTTTTTCCEEEEECCTTCCGGGGSSSCTTTCHHHHHHHTTCEEEECCCTTS
T ss_pred CCCceEEEEEcCCC-CEEEEEEecCCCCCCccCCCCCeEEEECCCccchhHHhhcCccchHHHHHHHCCCEEEEEcCCCC
Confidence 46678889999999 998887553 22333457789999999987765433221 2245566669999999999998
Q ss_pred CCCchhH----HhcccccC--CccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEE
Q 004766 523 GEYGEEW----HKGGALAK--KQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCAL 590 (732)
Q Consensus 523 g~~g~~~----~~~~~~~~--~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v 590 (732)
|.....- ........ ......|+.++++++.+. ...+++.++|||+||++++.++.++|+..+.++
T Consensus 103 G~S~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~i~~i~~~--~g~~~v~lvGhS~GG~ia~~~a~~~p~~~~~l~ 174 (377)
T d1k8qa_ 103 TWARRNLYYSPDSVEFWAFSFDEMAKYDLPATIDFILKK--TGQDKLHYVGHSQGTTIGFIAFSTNPKLAKRIK 174 (377)
T ss_dssp TTSCEESSSCTTSTTTTCCCHHHHHHTHHHHHHHHHHHH--HCCSCEEEEEETHHHHHHHHHHHHCHHHHTTEE
T ss_pred CCCCCCCCCCCcchhhccCCHHHHhhhhHHHHHHHHHHH--cCCCCEEEEEecchHHHHHHHHHhhhhhhhhce
Confidence 8653210 00000000 112456888999998766 233689999999999999999999998765443
|
| >d1a8qa_ c.69.1.12 (A:) Bromoperoxidase A1 {Streptomyces aureofaciens [TaxId: 1894]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloperoxidase domain: Bromoperoxidase A1 species: Streptomyces aureofaciens [TaxId: 1894]
Probab=99.67 E-value=1.4e-15 Score=151.42 Aligned_cols=225 Identities=14% Similarity=0.098 Sum_probs=130.2
Q ss_pred EEEccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhccc
Q 004766 455 FVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGA 534 (732)
Q Consensus 455 ~~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~ 534 (732)
.++++|| ++|.+... |..|.||++||..++. ..|...... |.++||.|+++|.||.|.....
T Consensus 2 ~~~t~dG-~~l~y~~~--------G~g~~ivlvHG~~~~~--~~~~~~~~~-l~~~g~~vi~~D~~G~G~S~~~------ 63 (274)
T d1a8qa_ 2 ICTTRDG-VEIFYKDW--------GQGRPVVFIHGWPLNG--DAWQDQLKA-VVDAGYRGIAHDRRGHGHSTPV------ 63 (274)
T ss_dssp EEECTTS-CEEEEEEE--------CSSSEEEEECCTTCCG--GGGHHHHHH-HHHTTCEEEEECCTTSTTSCCC------
T ss_pred eEECcCC-CEEEEEEE--------CCCCeEEEECCCCCCH--HHHHHHHHH-HHHCCCEEEEEeCCCCcccccc------
Confidence 4688999 98886543 3457789999987654 244443334 4448999999999998864321
Q ss_pred ccCCccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhh-CCCeeeEEEEcCCcccccccccC-CCCC----
Q 004766 535 LAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQ-RPDLFGCALAHVGVMDMLRYHKF-TIGH---- 608 (732)
Q Consensus 535 ~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~-~p~~f~a~v~~~p~~d~~~~~~~-~~~~---- 608 (732)
....++.++...+..+++. ...+++.++|+|+||.+++.++.+ +|+++++++...+.......... ....
T Consensus 64 --~~~~~~~~~~~dl~~~l~~--l~~~~~~lvGhS~Gg~~~~~~~a~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (274)
T d1a8qa_ 64 --WDGYDFDTFADDLNDLLTD--LDLRDVTLVAHSMGGGELARYVGRHGTGRLRSAVLLSAIPPVMIKSDKNPDGVPDEV 139 (274)
T ss_dssp --SSCCSHHHHHHHHHHHHHH--TTCCSEEEEEETTHHHHHHHHHHHHCSTTEEEEEEESCCCSCCBCCSSCTTSBCHHH
T ss_pred --cccccchhhHHHHHHHHHH--hhhhhhcccccccccchHHHHHHHhhhccceeEEEEeccCccchhhhhccchhhHHH
Confidence 1223445555444444443 234689999999999988876554 68999988776653322111000 0000
Q ss_pred --------------cc---ccc-cC--CC---CCHHHHH----------------H---HHhcCcccCCCCCCCCCCCCC
Q 004766 609 --------------AW---VSD-FG--CS---EEEEEFY----------------W---LIKYSPLHNVRRPWEQNPDKP 646 (732)
Q Consensus 609 --------------~~---~~~-~g--~p---~~~~~~~----------------~---~~~~sp~~~~~~~~~~~~~~~ 646 (732)
.+ ... +. .+ ......+ . +...+....+.+
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--------- 210 (274)
T d1a8qa_ 140 FDALKNGVLTERSQFWKDTAEGFFSANRPGNKVTQGNKDAFWYMAMAQTIEGGVRCVDAFGYTDFTEDLKK--------- 210 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTTSTTCCCCHHHHHHHHHHHTTSCHHHHHHHHHHHHHCCCHHHHTT---------
T ss_pred HHHHHhhhhhhhHHHhhhhhhhhhhccccchhhhhhHHHHHHHhhhccchhhhhhHHHHhhccchHHHHHh---------
Confidence 00 000 00 00 0010000 0 111111112222
Q ss_pred CCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeCCCCCCCCCchHHHHHHHHHHHHHHHH
Q 004766 647 FQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAK 724 (732)
Q Consensus 647 ~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~ 724 (732)
+..|+|+++|.+|..+|+....+..+++. ..+++++++++||...-...+.....+.+.+||.+
T Consensus 211 -i~~Pvlii~G~~D~~~~~~~~~~~~~~~~-------------~~~~~~~i~~~gH~~~~~~~~p~~~~~~i~~FL~k 274 (274)
T d1a8qa_ 211 -FDIPTLVVHGDDDQVVPIDATGRKSAQII-------------PNAELKVYEGSSHGIAMVPGDKEKFNRDLLEFLNK 274 (274)
T ss_dssp -CCSCEEEEEETTCSSSCGGGTHHHHHHHS-------------TTCEEEEETTCCTTTTTSTTHHHHHHHHHHHHHTC
T ss_pred -ccceeeeeccCCCCCcCHHHHHHHHHHhC-------------CCCEEEEECCCCCcccccccCHHHHHHHHHHHHCc
Confidence 78899999999999999877655444432 12588999999998643222223455567888853
|
| >d2r8ba1 c.69.1.14 (A:44-246) Uncharacterized protein Atu2452 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/thioesterase 1 domain: Uncharacterized protein Atu2452 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.66 E-value=4.9e-16 Score=148.01 Aligned_cols=183 Identities=14% Similarity=0.064 Sum_probs=123.5
Q ss_pred CCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCC-CchhHHhcccccCCccHHHHHHHHHHHHHH--
Q 004766 478 DGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGE-YGEEWHKGGALAKKQNCFDDFISASEYLIS-- 554 (732)
Q Consensus 478 ~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~-~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~-- 554 (732)
.+..|+||++||+.+... .|. .+...+. .++.|+.++.+..++ ++..+...+ .+.....|+...++.+..
T Consensus 14 ~~~~P~vi~lHG~G~~~~--~~~-~~~~~l~-~~~~v~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l 86 (203)
T d2r8ba1 14 VAGAPLFVLLHGTGGDEN--QFF-DFGARLL-PQATILSPVGDVSEHGAARFFRRTG---EGVYDMVDLERATGKMADFI 86 (203)
T ss_dssp CTTSCEEEEECCTTCCHH--HHH-HHHHHHS-TTSEEEEECCSEEETTEEESSCBCG---GGCBCHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHH--HHH-HHHHHhc-cCCeEEEeccccccccccccccccC---ccccchhHHHHHHHHHHHHH
Confidence 356899999999765421 222 2344555 678888876653321 111111111 122223344333333321
Q ss_pred -c--CCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCcccccccccCCCCCccccccCCCCCHHHHHHHHhcCc
Q 004766 555 -A--GYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHAWVSDFGCSEEEEEFYWLIKYSP 631 (732)
Q Consensus 555 -~--~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~sp 631 (732)
. ..+++++|+++|+|+||.++..++..+|+.+.++++..|..... .
T Consensus 87 ~~~~~~~~~~~v~l~G~S~Gg~~a~~~a~~~p~~~~~~~~~~~~~~~~----------~--------------------- 135 (203)
T d2r8ba1 87 KANREHYQAGPVIGLGFSNGANILANVLIEQPELFDAAVLMHPLIPFE----------P--------------------- 135 (203)
T ss_dssp HHHHHHHTCCSEEEEEETHHHHHHHHHHHHSTTTCSEEEEESCCCCSC----------C---------------------
T ss_pred HHhhhcCCCceEEEEEecCHHHHHHHHHHhhhhcccceeeeccccccc----------c---------------------
Confidence 1 23688999999999999999999999999999999988864210 0
Q ss_pred ccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeCCCCCCCCCchHHH
Q 004766 632 LHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKM 711 (732)
Q Consensus 632 ~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~ 711 (732)
.... . ...+|++++||++|++||+.++.+++++|++. |.++++++|++ ||++..
T Consensus 136 ~~~~-~---------~~~~~~~i~hG~~D~~vp~~~~~~~~~~L~~~----------g~~v~~~~~~g-gH~~~~----- 189 (203)
T d2r8ba1 136 KISP-A---------KPTRRVLITAGERDPICPVQLTKALEESLKAQ----------GGTVETVWHPG-GHEIRS----- 189 (203)
T ss_dssp CCCC-C---------CTTCEEEEEEETTCTTSCHHHHHHHHHHHHHH----------SSEEEEEEESS-CSSCCH-----
T ss_pred cccc-c---------cccchhhccccCCCCcccHHHHHHHHHHHHHC----------CCCEEEEEECC-CCcCCH-----
Confidence 0000 1 15679999999999999999999999999998 99999999986 899753
Q ss_pred HHHHHHHHHHHHHH
Q 004766 712 IDEAADRYGFMAKM 725 (732)
Q Consensus 712 ~~~~~~~~~fl~~~ 725 (732)
+....+.+||.++
T Consensus 190 -~~~~~~~~wl~~~ 202 (203)
T d2r8ba1 190 -GEIDAVRGFLAAY 202 (203)
T ss_dssp -HHHHHHHHHHGGG
T ss_pred -HHHHHHHHHHHhc
Confidence 2344567888754
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.65 E-value=4.7e-14 Score=140.17 Aligned_cols=243 Identities=13% Similarity=0.103 Sum_probs=161.2
Q ss_pred cEEEEEEeccC-CceEEEEEEECCCCceecccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCCcccEEEE
Q 004766 144 KYLAYALSYSG-SDWATIKLMRIEDQIVEADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYY 222 (732)
Q Consensus 144 ~~la~~~~~~G-~e~~~i~v~dl~~g~~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 222 (732)
++|||++...| ...++|||+|.+++.....+.......+++|||||++|+|++... ....++.
T Consensus 4 ~~iay~~~~~~~~~~~~l~i~d~dG~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~----------------~~~~~~~ 67 (269)
T d2hqsa1 4 TRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFES----------------GRSALVI 67 (269)
T ss_dssp CEEEEEEECSSSSCCEEEEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTT----------------SSCEEEE
T ss_pred CeEEEEEEeCCCCceEEEEEEcCCCCCcEEEecCCCceeeeEECCCCCEEEEEEeec----------------cCcceee
Confidence 78999998864 446799999998877544332222236899999999999997543 3346788
Q ss_pred EECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCCCCcEEeeec-
Q 004766 223 HFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDG- 301 (732)
Q Consensus 223 ~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~- 301 (732)
.+..++... .+... ......+.|||||+.|++...... ...+......... .......
T Consensus 68 ~~~~~~~~~--~~~~~---~~~~~~~~~spdg~~i~~~~~~~~--~~~~~~~~~~~~~--------------~~~~~~~~ 126 (269)
T d2hqsa1 68 QTLANGAVR--QVASF---PRHNGAPAFSPDGSKLAFALSKTG--SLNLYVMDLASGQ--------------IRQVTDGR 126 (269)
T ss_dssp EETTTCCEE--EEECC---SSCEEEEEECTTSSEEEEEECTTS--SCEEEEEETTTCC--------------EEECCCCS
T ss_pred eecccCcee--EEeee---ecccccceecCCCCeeeEeeecCC--ccceeeccccccc--------------ceeeeecc
Confidence 887765432 23222 223457899999999999876544 3344444433211 1122221
Q ss_pred ccceEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecC-CEEEEEEecCCeeEEEEEeC
Q 004766 302 FDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNL-NQMIVSYLSDVKYVLQIRDL 380 (732)
Q Consensus 302 ~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~-~~l~~~~~~~g~~~l~~~d~ 380 (732)
.......++++++.+++.+.+.+ ...|+..+++++. ...+.... .......++++ ..+++....++...|++++.
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~g-~~~i~~~~~~~~~-~~~~~~~~--~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~ 202 (269)
T d2hqsa1 127 SNNTEPTWFPDSQNLAFTSDQAG-RPQVYKVNINGGA-PQRITWEG--SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDL 202 (269)
T ss_dssp SCEEEEEECTTSSEEEEEECTTS-SCEEEEEETTSSC-CEECCCSS--SEEEEEEECTTSSEEEEEEECSSCEEEEEEET
T ss_pred ccccccccccccccceecccccC-CceEeeeeccccc-ceeeeccc--ccccccccccccceeEEEeecCCceeeeEeec
Confidence 22223457888888888887654 5679999998876 34444332 45566778875 56777777888889999998
Q ss_pred CCCceeeecccccceeeEeecccCCcEEEEEEecCCCCceEEEEECCCCC
Q 004766 381 KNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 430 (732)
Q Consensus 381 ~~g~~~~~l~~~~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~~ 430 (732)
.++.. ++....+....+.++|||+.|+|... ......+|.+++.++.
T Consensus 203 ~~~~~--~~~~~~~~~~~p~~SPDG~~i~f~s~-~~~~~~l~~~~~dg~~ 249 (269)
T d2hqsa1 203 ATGGV--QVLSSTFLDETPSLAPNGTMVIYSSS-QGMGSVLNLVSTDGRF 249 (269)
T ss_dssp TTCCE--EECCCSSSCEEEEECTTSSEEEEEEE-ETTEEEEEEEETTSCC
T ss_pred ccccc--eEeecCccccceEECCCCCEEEEEEc-CCCCcEEEEEECCCCC
Confidence 75543 33334444556789999999987643 3456789999998764
|
| >d1q0ra_ c.69.1.28 (A:) Aclacinomycin methylesterase RdmC {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Aclacinomycin methylesterase RdmC domain: Aclacinomycin methylesterase RdmC species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.65 E-value=2e-15 Score=152.45 Aligned_cols=233 Identities=12% Similarity=0.062 Sum_probs=139.2
Q ss_pred CCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCc
Q 004766 460 DGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQ 539 (732)
Q Consensus 460 dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~ 539 (732)
+| ++|.+..+-+ ...|.||++||..++.. .|...+...|.++||.|+++|.||.|....... ....
T Consensus 8 g~-~~i~y~~~G~------~~~p~vvl~HG~~~~~~--~~~~~~~~~l~~~g~~vi~~D~~G~G~S~~~~~-----~~~~ 73 (297)
T d1q0ra_ 8 GD-VELWSDDFGD------PADPALLLVMGGNLSAL--GWPDEFARRLADGGLHVIRYDHRDTGRSTTRDF-----AAHP 73 (297)
T ss_dssp TT-EEEEEEEESC------TTSCEEEEECCTTCCGG--GSCHHHHHHHHTTTCEEEEECCTTSTTSCCCCT-----TTSC
T ss_pred CC-EEEEEEEecC------CCCCEEEEECCCCcChh--HHHHHHHHHHHhCCCEEEEEeCCCCcccccccc-----cccc
Confidence 67 8887766532 34689999999866532 344444455555999999999999886532211 1122
Q ss_pred cHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCcccccccc--------------cCC
Q 004766 540 NCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYH--------------KFT 605 (732)
Q Consensus 540 ~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~--------------~~~ 605 (732)
.+++|+.+.+..+++. .+.+++.++|+|+||.+++.++.++|++++++|+..+........ ...
T Consensus 74 ~~~~~~~~d~~~ll~~--l~~~~~~lvGhS~Gg~~a~~~a~~~P~~v~~lvli~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (297)
T d1q0ra_ 74 YGFGELAADAVAVLDG--WGVDRAHVVGLSMGATITQVIALDHHDRLSSLTMLLGGGLDIDFDANIERVMRGEPTLDGLP 151 (297)
T ss_dssp CCHHHHHHHHHHHHHH--TTCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCCTTCCHHHHHHHHHHTCCCSSCSC
T ss_pred cccchhhhhhcccccc--ccccceeeccccccchhhhhhhcccccceeeeEEEccccccccchhhhHHHhhhhhhhhhhh
Confidence 3577776666666554 345689999999999999999999999999998876654221100 000
Q ss_pred CCCc-cc---------------------------cccCCCCCHHHHHHHH----hcCc-c-----cCCC---CCCCCCCC
Q 004766 606 IGHA-WV---------------------------SDFGCSEEEEEFYWLI----KYSP-L-----HNVR---RPWEQNPD 644 (732)
Q Consensus 606 ~~~~-~~---------------------------~~~g~p~~~~~~~~~~----~~sp-~-----~~~~---~~~~~~~~ 644 (732)
.... +. .....+.+...+..+. .... . .... ...+....
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (297)
T d1q0ra_ 152 GPQQPFLDALALMNQPAEGRAAEVAKRVSKWRILSGTGVPFDDAEYARWEERAIDHAGGVLAEPYAHYSLTLPPPSRAAE 231 (297)
T ss_dssp CCCHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHHTTTCCSCCCGGGGCCCCCGGGGGG
T ss_pred hhhHHHHHHHHHhccccchhhHHHHHHHHHHhhhccccccchHHHHHHHHHHhhhhccccchhhhhhhhhhhccccchhh
Confidence 0000 00 0001112222111111 0000 0 0000 00000011
Q ss_pred CCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeCCCCCCCCCchHHHHHHHHHHHHHHHH
Q 004766 645 KPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAK 724 (732)
Q Consensus 645 ~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~ 724 (732)
...+..|+|+++|.+|..||+.++.++.+.+.. .++++++++||.......+ +..+.+.+||..
T Consensus 232 l~~i~~Pvlvi~G~~D~~~~~~~~~~~~~~~p~--------------~~~~~i~~~gH~~~~e~p~--~~~~~i~~~l~~ 295 (297)
T d1q0ra_ 232 LREVTVPTLVIQAEHDPIAPAPHGKHLAGLIPT--------------ARLAEIPGMGHALPSSVHG--PLAEVILAHTRS 295 (297)
T ss_dssp GGGCCSCEEEEEETTCSSSCTTHHHHHHHTSTT--------------EEEEEETTCCSSCCGGGHH--HHHHHHHHHHHH
T ss_pred hhccCCceEEEEeCCCCCCCHHHHHHHHHhCCC--------------CEEEEECCCCCcchhhCHH--HHHHHHHHHHHh
Confidence 124789999999999999999998877665542 4788999999998654443 445556666654
|
| >d1tqha_ c.69.1.29 (A:) Carboxylesterase Est {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/lipase domain: Carboxylesterase Est species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.64 E-value=6.7e-16 Score=149.71 Aligned_cols=211 Identities=15% Similarity=0.122 Sum_probs=127.4
Q ss_pred CccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCccHHHHHHHHHHHHHHcCCCC
Q 004766 480 SHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQ 559 (732)
Q Consensus 480 ~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d 559 (732)
..+.||++||..++.. .|.. +...|+++||.|+++|+||.|+....... ........+...++..+... .
T Consensus 10 ~~~~vvliHG~~~~~~--~~~~-l~~~L~~~G~~v~~~D~~G~G~s~~~~~~----~~~~~~~~~~~~~~~~~~~~---~ 79 (242)
T d1tqha_ 10 GERAVLLLHGFTGNSA--DVRM-LGRFLESKGYTCHAPIYKGHGVPPEELVH----TGPDDWWQDVMNGYEFLKNK---G 79 (242)
T ss_dssp SSCEEEEECCTTCCTH--HHHH-HHHHHHHTTCEEEECCCTTSSSCHHHHTT----CCHHHHHHHHHHHHHHHHHH---T
T ss_pred CCCeEEEECCCCCCHH--HHHH-HHHHHHHCCCEEEEEeCCCCccccccccc----cchhHHHHHHHHHHhhhhhc---c
Confidence 4467888999876532 3433 45566669999999999998865443221 11122344555555555544 3
Q ss_pred CCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCccccccccc-----------CCCCCcc------ccccCC--CCCH
Q 004766 560 SRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHK-----------FTIGHAW------VSDFGC--SEEE 620 (732)
Q Consensus 560 ~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~-----------~~~~~~~------~~~~g~--p~~~ 620 (732)
.+++.++|+|+||.++..++.++|.....+++............ ....... ...+.. ....
T Consensus 80 ~~~~~l~G~S~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (242)
T d1tqha_ 80 YEKIAVAGLSLGGVFSLKLGYTVPIEGIVTMCAPMYIKSEETMYEGVLEYAREYKKREGKSEEQIEQEMEKFKQTPMKTL 159 (242)
T ss_dssp CCCEEEEEETHHHHHHHHHHTTSCCSCEEEESCCSSCCCHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTTSCCTTH
T ss_pred cCceEEEEcchHHHHhhhhcccCcccccccccccccccchhHHHHHHHHHHHHHhhhccchhhhHHHHHhhhhhhccchh
Confidence 46899999999999999999999987655544333222110000 0000000 000000 0111
Q ss_pred HHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeCCC
Q 004766 621 EEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKA 700 (732)
Q Consensus 621 ~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 700 (732)
.... ............ +.+|+|+++|.+|..||+..+.+++++++ +..+++++++++
T Consensus 160 ~~~~-~~~~~~~~~~~~----------~~~p~lii~g~~D~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~ 216 (242)
T d1tqha_ 160 KALQ-ELIADVRDHLDL----------IYAPTFVVQARHDEMINPDSANIIYNEIE------------SPVKQIKWYEQS 216 (242)
T ss_dssp HHHH-HHHHHHHHTGGG----------CCSCEEEEEETTCSSSCTTHHHHHHHHCC------------CSSEEEEEETTC
T ss_pred hccc-ccccccccccce----------eccccceeecccCCccCHHHHHHHHHHcC------------CCCcEEEEECCC
Confidence 1000 011112223333 78899999999999999999999887764 345799999999
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHH
Q 004766 701 GHGVGLPTQKMIDEAADRYGFMAK 724 (732)
Q Consensus 701 gH~~~~~~~~~~~~~~~~~~fl~~ 724 (732)
||....... .....+.+.+||.+
T Consensus 217 gH~~~~~~~-~~~~~~~i~~Fl~~ 239 (242)
T d1tqha_ 217 GHVITLDQE-KDQLHEDIYAFLES 239 (242)
T ss_dssp CSSGGGSTT-HHHHHHHHHHHHHH
T ss_pred CCcCccccC-HHHHHHHHHHHHHh
Confidence 998654332 23456778889865
|
| >d1r88a_ c.69.1.3 (A:) Antigen pt51/mpb51 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Mycobacterial antigens domain: Antigen pt51/mpb51 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.64 E-value=5.3e-16 Score=154.51 Aligned_cols=220 Identities=13% Similarity=0.068 Sum_probs=146.7
Q ss_pred EEEEEEEcc-CCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcC--hhHHHHHHhcCcEEEEEcccCCCCCch
Q 004766 451 VHQVFVPSK-DGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFS--VSRTILMRHLGAVFCIANIRGGGEYGE 527 (732)
Q Consensus 451 ~~~~~~~s~-dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~--~~~~~~l~~~G~~v~~~~~rG~g~~g~ 527 (732)
+|++.++|+ .| ..||..+..+ ..|+|++.||..+......|. ......+++++++|+++|.- .+.+..
T Consensus 4 ~e~~~v~s~~~~-r~~~~~v~~~-------~~pvlylLhG~~g~~~~~~w~~~~~~~~~~~~~~~iVV~p~g~-~~~~y~ 74 (267)
T d1r88a_ 4 YENLMVPSPSMG-RDIPVAFLAG-------GPHAVYLLDAFNAGPDVSNWVTAGNAMNTLAGKGISVVAPAGG-AYSMYT 74 (267)
T ss_dssp CEEEEEEETTTT-EEEEEEEECC-------SSSEEEEECCSSCCSSSCHHHHTSCHHHHHTTSSSEEEEECCC-TTSTTS
T ss_pred eEEEEEecccCC-ceeeEEEECC-------CCCEEEEcCCCCCCCCcchhhhccHHHHHHhhCCeEEEEECCC-CCcCCc
Confidence 567888776 56 7899887643 349999999965532222232 22456677799999999852 223333
Q ss_pred hHHhcccccCCccHHHHHHH--HHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCcccccccccCC
Q 004766 528 EWHKGGALAKKQNCFDDFIS--ASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFT 605 (732)
Q Consensus 528 ~~~~~~~~~~~~~~~~D~~~--~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~ 605 (732)
.|... +...+++++. .+.++.++-.+|++|++|.|.||||++++.++.++||+|+++++.+|.+++.......
T Consensus 75 ~~~~~-----~~~~~~tfl~~eL~~~i~~~~~~d~~r~~i~G~SmGG~~Al~la~~~Pd~F~av~~~SG~~~~~~~~~~~ 149 (267)
T d1r88a_ 75 NWEQD-----GSKQWDTFLSAELPDWLAANRGLAPGGHAAVGAAQGGYGAMALAAFHPDRFGFAGSMSGFLYPSNTTTNG 149 (267)
T ss_dssp BCSSC-----TTCBHHHHHHTHHHHHHHHHSCCCSSCEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCCCTTSHHHHH
T ss_pred ccccc-----ccccHHHHHHHHHHHHHHHhcCCCCCceEEEEEcchHHHHHHHHHhCcccccEEEEeCCccCCCCccchh
Confidence 33222 2233566654 6777877777899999999999999999999999999999999999988754321100
Q ss_pred ---------CCCccccccCCCCCHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCc-----------
Q 004766 606 ---------IGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVP----------- 665 (732)
Q Consensus 606 ---------~~~~~~~~~g~p~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~----------- 665 (732)
.+......||.+..+. +.+.+|+.+++... ...+++++.+|.+|..+.+
T Consensus 150 ~~~~~~~~~~~~~~~~~~g~~~~~~----~~~~~p~~~~~~~~-------~~~~~~~~~~G~~d~~~~~~~~~~~~~~~~ 218 (267)
T d1r88a_ 150 AIAAGMQQFGGVDTNGMWGAPQLGR----WKWHDPWVHASLLA-------QNNTRVWVWSPTNPGASDPAAMIGQAAEAM 218 (267)
T ss_dssp HHHHHHHHHHCCCTHHHHCCGGGST----TGGGCTTTTHHHHH-------HTTCEEEEECCSSCCCSSGGGGTTCHHHHH
T ss_pred hhhhHHhhhcCCcHhhccCCcchHh----HHhcCHHHHHHhcc-------ccCceEEEEecCCCcccccchhhhhHHHhh
Confidence 0000112234432221 24567877665420 1357899999999977654
Q ss_pred hHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeCCCCCCC
Q 004766 666 LHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGV 704 (732)
Q Consensus 666 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~ 704 (732)
.++.++.++|++. ++.++.+.+.+++||..
T Consensus 219 ~~~~~~~~~l~~~---------~g~~~~~~~~~~G~H~W 248 (267)
T d1r88a_ 219 GNSRMFYNQYRSV---------GGHNGHFDFPASGDNGW 248 (267)
T ss_dssp HHHHHHHHHHHHT---------TCCSEEEECCSSCCSSH
T ss_pred hhHHHHHHHHHHc---------CCCcEEEEEcCCCeECh
Confidence 2456788888876 36788988888899964
|
| >d1uk8a_ c.69.1.10 (A:) Meta-cleavage product hydrolase CumD {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carbon-carbon bond hydrolase domain: Meta-cleavage product hydrolase CumD species: Pseudomonas fluorescens [TaxId: 294]
Probab=99.63 E-value=2.4e-15 Score=149.58 Aligned_cols=221 Identities=13% Similarity=0.014 Sum_probs=135.6
Q ss_pred ccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCC-CcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhccccc
Q 004766 458 SKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTP-SFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALA 536 (732)
Q Consensus 458 s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~-~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~ 536 (732)
..+| .++.+... |..|.||++||..+..... .|.. ....|+ +||.|+++|.||.|..... .
T Consensus 9 ~~~G-~~~~Y~~~--------G~G~pvvllHG~~~~~~~~~~~~~-~~~~l~-~~~~vi~~Dl~G~G~S~~~-------~ 70 (271)
T d1uk8a_ 9 LAAG-VLTNYHDV--------GEGQPVILIHGSGPGVSAYANWRL-TIPALS-KFYRVIAPDMVGFGFTDRP-------E 70 (271)
T ss_dssp EETT-EEEEEEEE--------CCSSEEEEECCCSTTCCHHHHHTT-THHHHT-TTSEEEEECCTTSTTSCCC-------T
T ss_pred EECC-EEEEEEEE--------eeCCeEEEECCCCCCccHHHHHHH-HHHHHh-CCCEEEEEeCCCCCCcccc-------c
Confidence 3489 88876533 3457789999986543221 1232 235566 8999999999998864321 1
Q ss_pred CCccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCcccccccc-------cCCCCCc
Q 004766 537 KKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYH-------KFTIGHA 609 (732)
Q Consensus 537 ~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~-------~~~~~~~ 609 (732)
.....++++...+..+++. .+.+++.++|+|+||.+++.++.++|++++++|+..|........ .......
T Consensus 71 ~~~~~~~~~~~~~~~~~~~--l~~~~~~lvG~S~Gg~ia~~~a~~~p~~~~~lil~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (271)
T d1uk8a_ 71 NYNYSKDSWVDHIIGIMDA--LEIEKAHIVGNAFGGGLAIATALRYSERVDRMVLMGAAGTRFDVTEGLNAVWGYTPSIE 148 (271)
T ss_dssp TCCCCHHHHHHHHHHHHHH--TTCCSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCCSCCCCCHHHHHHHTCCSCHH
T ss_pred cccccccccchhhhhhhhh--hcCCCceEeeccccceeehHHHHhhhccchheeecccCCCcccchhhhhhhhhccchhH
Confidence 2233567777777777765 344689999999999999999999999999999876643211100 0000000
Q ss_pred c----ccccCC-C--CCHHH-------------HHHHHhcC-------------cccCCCCCCCCCCCCCCCCCeEEEEe
Q 004766 610 W----VSDFGC-S--EEEEE-------------FYWLIKYS-------------PLHNVRRPWEQNPDKPFQYPSTLLLT 656 (732)
Q Consensus 610 ~----~~~~g~-p--~~~~~-------------~~~~~~~s-------------p~~~~~~~~~~~~~~~~~~~p~Li~~ 656 (732)
+ ...+.. + ..... .+.+.... ....+. .+..|+|+++
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----------~i~~P~lii~ 218 (271)
T d1uk8a_ 149 NMRNLLDIFAYDRSLVTDELARLRYEASIQPGFQESFSSMFPEPRQRWIDALASSDEDIK----------TLPNETLIIH 218 (271)
T ss_dssp HHHHHHHHHCSCGGGCCHHHHHHHHHHHTSTTHHHHHHTTSCSSTHHHHHHHCCCHHHHT----------TCCSCEEEEE
T ss_pred HHHHHHHHHhhhcccchhHHHHHHHhhhhchhHHHHHHhhcchhhhhhhhhccccHHHHH----------hhccceeEEe
Confidence 0 000000 0 00000 00011111 111122 3788999999
Q ss_pred eCCCCCCCchHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeCCCCCCCCCchHHHHHHHHHHHHHHHH
Q 004766 657 ADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAK 724 (732)
Q Consensus 657 g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~ 724 (732)
|.+|..+|+..+.++.+.+. ..++.+++++||....... .+..+.+.+||.+
T Consensus 219 G~~D~~~~~~~~~~~~~~~~--------------~~~~~~~~~~gH~~~~e~p--~~~~~~i~~Fl~e 270 (271)
T d1uk8a_ 219 GREDQVVPLSSSLRLGELID--------------RAQLHVFGRCGHWTQIEQT--DRFNRLVVEFFNE 270 (271)
T ss_dssp ETTCSSSCHHHHHHHHHHCT--------------TEEEEEESSCCSCHHHHTH--HHHHHHHHHHHHT
T ss_pred cCCCCCcCHHHHHHHHHhCC--------------CCEEEEECCCCCchHHHCH--HHHHHHHHHHHhc
Confidence 99999999988877766543 2588999999997543222 3455677888865
|
| >d1dqza_ c.69.1.3 (A:) Antigen 85c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Mycobacterial antigens domain: Antigen 85c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.62 E-value=9.2e-16 Score=153.92 Aligned_cols=226 Identities=12% Similarity=0.042 Sum_probs=148.9
Q ss_pred ceEEEEEEEcc-CCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcCh--hHHHHHHhcCcEEEEEcccCCCCC
Q 004766 449 FHVHQVFVPSK-DGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSV--SRTILMRHLGAVFCIANIRGGGEY 525 (732)
Q Consensus 449 ~~~~~~~~~s~-dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~--~~~~~l~~~G~~v~~~~~rG~g~~ 525 (732)
+.++.+.++|+ -| ..|++.+. .++.|+|++.||..+......|.. ...++++++|++|++|+... +.+
T Consensus 4 ~~v~~~~~~s~~~~-r~i~~~~~-------~~~~p~lyllhG~~g~~d~~~W~~~~~~~~~~~~~~~ivV~P~~~~-~~~ 74 (280)
T d1dqza_ 4 LPVEYLQVPSASMG-RDIKVQFQ-------GGGPHAVYLLDGLRAQDDYNGWDINTPAFEEYYQSGLSVIMPVGGQ-SSF 74 (280)
T ss_dssp SCEEEEEEEETTTT-EEEEEEEE-------CCSSSEEEECCCTTCCSSSCHHHHHSCHHHHHTTSSSEEEEECCCT-TCT
T ss_pred cEEEEEEEecccCC-CcceEEee-------CCCCCEEEECCCCCCCCccchhhhcchHHHHHHhCCcEEEEECCCC-CCc
Confidence 45677777665 57 88888863 246799999999766433333322 24567788999999999533 334
Q ss_pred chhHHhccccc--CCccHHHHHH--HHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCccccccc
Q 004766 526 GEEWHKGGALA--KKQNCFDDFI--SASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRY 601 (732)
Q Consensus 526 g~~~~~~~~~~--~~~~~~~D~~--~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~ 601 (732)
...|+...... .+...+++++ +.+.+|.++..+|++|++|.|+||||++++.++.++|++|+++++.+|.++....
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~el~~~i~~~~~~d~~r~~i~G~SmGG~~Al~lA~~~Pd~F~av~s~SG~~~~~~~ 154 (280)
T d1dqza_ 75 YTDWYQPSQSNGQNYTYKWETFLTREMPAWLQANKGVSPTGNAAVGLSMSGGSALILAAYYPQQFPYAASLSGFLNPSES 154 (280)
T ss_dssp TSBCSSSCTTTTCCSCCBHHHHHHTHHHHHHHHHHCCCSSSCEEEEETHHHHHHHHHHHHCTTTCSEEEEESCCCCTTST
T ss_pred CccccCCcccccCCcchhHHHHHHHHHHHHHHHhcCCCCCceEEEEechHHHHHHHHHHhCcCceeEEEEecCccCcccC
Confidence 44455443222 2223455543 4667777776789999999999999999999999999999999999998875422
Q ss_pred cc---------CCCCCccccccCCCCCHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCc-------
Q 004766 602 HK---------FTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVP------- 665 (732)
Q Consensus 602 ~~---------~~~~~~~~~~~g~p~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~------- 665 (732)
.. ...+.....-||.+.++. ..+++|+.++++.. ...+++++.+|..|...+.
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~----~~~~~p~~~~~~~~-------~~~~~~~~~~G~~~~~~~~~~~~~~~ 223 (280)
T d1dqza_ 155 WWPTLIGLAMNDSGGYNANSMWGPSSDPA----WKRNDPMVQIPRLV-------ANNTRIWVYCGNGTPSDLGGDNIPAK 223 (280)
T ss_dssp THHHHHHHHHHHTTSCCHHHHHCSTTSHH----HHHTCTTTTHHHHH-------HHTCEEEEECCCSCCCTTCCCSHHHH
T ss_pred cchhhhhhhHhhccCCCHhhccCCcchhh----hhhcCHHHHHHHhh-------hcCCeEEEEeCCCCCccccccccccc
Confidence 10 000111112345554432 45678887776520 1246899999998876552
Q ss_pred -------hHHHHHHHHHHHhhcCCCCCCCCCCC-EEEEEeCCCCCCC
Q 004766 666 -------LHSLKLLATMQYVLCTSLENSPQTNP-IIGRIERKAGHGV 704 (732)
Q Consensus 666 -------~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~gH~~ 704 (732)
.++.++.++|.++ +.+ +.+...+++||..
T Consensus 224 ~~e~~~~~~~~~~~~~l~~~----------g~~~~~~~~~~~GgH~W 260 (280)
T d1dqza_ 224 FLEGLTLRTNQTFRDTYAAD----------GGRNGVFNFPPNGTHSW 260 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHT----------TCCSEEEECCSCCCSSH
T ss_pred hhhHHHHHHHHHHHHHHHHc----------CCCeEEEEEcCCCccCc
Confidence 4567888888877 554 4444445678964
|
| >d1j1ia_ c.69.1.10 (A:) Meta cleavage compound hydrolase CarC {Janthinobacterium sp. J3 [TaxId: 213804]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carbon-carbon bond hydrolase domain: Meta cleavage compound hydrolase CarC species: Janthinobacterium sp. J3 [TaxId: 213804]
Probab=99.62 E-value=4.5e-15 Score=147.27 Aligned_cols=225 Identities=15% Similarity=0.106 Sum_probs=133.2
Q ss_pred ccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCC-CCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhccccc
Q 004766 458 SKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVT-PSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALA 536 (732)
Q Consensus 458 s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~-~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~ 536 (732)
..|| +++.+.. . |..|.||++||..+.... ..|.. ....|+ +||.|+++|.||.|.... .
T Consensus 8 ~~dg-~~l~y~~---~-----G~g~~vvllHG~~~~~~~~~~~~~-~~~~l~-~~~~v~~~D~~G~G~S~~--------~ 68 (268)
T d1j1ia_ 8 NAGG-VETRYLE---A-----GKGQPVILIHGGGAGAESEGNWRN-VIPILA-RHYRVIAMDMLGFGKTAK--------P 68 (268)
T ss_dssp EETT-EEEEEEE---E-----CCSSEEEEECCCSTTCCHHHHHTT-THHHHT-TTSEEEEECCTTSTTSCC--------C
T ss_pred EECC-EEEEEEE---E-----cCCCeEEEECCCCCCccHHHHHHH-HHHHHh-cCCEEEEEcccccccccC--------C
Confidence 3489 9887542 2 345779999998764322 12433 345566 899999999999875421 1
Q ss_pred CCccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCccccccccc-------CCCCCc
Q 004766 537 KKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHK-------FTIGHA 609 (732)
Q Consensus 537 ~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~-------~~~~~~ 609 (732)
.....++++...+..+++.-.. .+++.++|+|+||.+++.++.++|++++++|+..|..-...... ......
T Consensus 69 ~~~~~~~~~~~~~~~~i~~l~~-~~~~~liG~S~Gg~ia~~~a~~~p~~v~~lil~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (268)
T d1j1ia_ 69 DIEYTQDRRIRHLHDFIKAMNF-DGKVSIVGNSMGGATGLGVSVLHSELVNALVLMGSAGLVVEIHEDLRPIINYDFTRE 147 (268)
T ss_dssp SSCCCHHHHHHHHHHHHHHSCC-SSCEEEEEEHHHHHHHHHHHHHCGGGEEEEEEESCCBCCCC----------CCSCHH
T ss_pred ccccccccccccchhhHHHhhh-cccceeeeccccccccchhhccChHhhheeeecCCCccccccchhhhhhhhhhhhhh
Confidence 2233456666655555544222 25799999999999999999999999999988766422111100 000000
Q ss_pred ----cccc-cCC--CCCHH--------------------HHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCC
Q 004766 610 ----WVSD-FGC--SEEEE--------------------EFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDR 662 (732)
Q Consensus 610 ----~~~~-~g~--p~~~~--------------------~~~~~~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~ 662 (732)
.... +.. ....+ ....+........... ....+..|+|+++|++|..
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~l~~i~~P~l~i~G~~D~~ 221 (268)
T d1j1ia_ 148 GMVHLVKALTNDGFKIDDAMINSRYTYATDEATRKAYVATMQWIREQGGLFYDPE------FIRKVQVPTLVVQGKDDKV 221 (268)
T ss_dssp HHHHHHHHHSCTTCCCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHTSSBCCHH------HHTTCCSCEEEEEETTCSS
T ss_pred hhHHHHHHHhhhhhhhhhhhhHHHHHhhhhhhhhhhhhhhhhhhhccccccchhh------hHhhCCCCEEEEEeCCCCC
Confidence 0000 000 00000 0011111111111000 0113788999999999999
Q ss_pred CCchHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeCCCCCCCCCchHHHHHHHHHHHHHHHH
Q 004766 663 VVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAK 724 (732)
Q Consensus 663 v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~ 724 (732)
+|+..+.++.+.+. ..++++++++||....... .+....+.+||.+
T Consensus 222 ~~~~~~~~~~~~~~--------------~~~~~~~~~~gH~~~~e~p--~~~~~~i~~FL~~ 267 (268)
T d1j1ia_ 222 VPVETAYKFLDLID--------------DSWGYIIPHCGHWAMIEHP--EDFANATLSFLSL 267 (268)
T ss_dssp SCHHHHHHHHHHCT--------------TEEEEEESSCCSCHHHHSH--HHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhCC--------------CCEEEEECCCCCchHHhCH--HHHHHHHHHHHcC
Confidence 99988877766554 2588999999998643222 3455678888864
|
| >d1imja_ c.69.1.23 (A:) Ccg1/TafII250-interacting factor B (Cib) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Ccg1/TafII250-interacting factor B (Cib) domain: Ccg1/TafII250-interacting factor B (Cib) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=2.6e-16 Score=150.31 Aligned_cols=194 Identities=11% Similarity=-0.010 Sum_probs=121.9
Q ss_pred cCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCC
Q 004766 459 KDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKK 538 (732)
Q Consensus 459 ~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~ 538 (732)
-+| .+|.+....|.. +...|+||++||..++...+.... ....|+++||.|+++|+||.|..... .......
T Consensus 13 v~G-~~i~y~~~~~~~---~~~~~~vvllHG~~~~~~~w~~~~-~~~~la~~gy~via~D~~G~G~S~~~---~~~~~~~ 84 (208)
T d1imja_ 13 VQG-QALFFREALPGS---GQARFSVLLLHGIRFSSETWQNLG-TLHRLAQAGYRAVAIDLPGLGHSKEA---AAPAPIG 84 (208)
T ss_dssp ETT-EEECEEEEECSS---SCCSCEEEECCCTTCCHHHHHHHT-HHHHHHHTTCEEEEECCTTSGGGTTS---CCSSCTT
T ss_pred ECC-EEEEEEEecCCC---CCCCCeEEEECCCCCChhHHhhhH-HHHHHHHcCCeEEEeecccccCCCCC---Ccccccc
Confidence 389 899887777753 356788999999876543222111 23446669999999999997643211 1001111
Q ss_pred ccH-HHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCcccccccccCCCCCccccccCCC
Q 004766 539 QNC-FDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHAWVSDFGCS 617 (732)
Q Consensus 539 ~~~-~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~~~~~~~g~p 617 (732)
... .+++.+.++.+ +.+++.++|+|+||.+++.++.++|++++++|+..|... .++
T Consensus 85 ~~~~~~~l~~~~~~l------~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lV~~~p~~~--------------~~~--- 141 (208)
T d1imja_ 85 ELAPGSFLAAVVDAL------ELGPPVVISPSLSGMYSLPFLTAPGSQLPGFVPVAPICT--------------DKI--- 141 (208)
T ss_dssp SCCCTHHHHHHHHHH------TCCSCEEEEEGGGHHHHHHHHTSTTCCCSEEEEESCSCG--------------GGS---
T ss_pred hhhhhhhhhhccccc------ccccccccccCcHHHHHHHHHHHhhhhcceeeecCcccc--------------ccc---
Confidence 111 12333333332 346889999999999999999999999999998877421 111
Q ss_pred CCHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEe
Q 004766 618 EEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIE 697 (732)
Q Consensus 618 ~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 697 (732)
..+.+ .+ +..|+|+++|++|..+|... +.++. -...++.++
T Consensus 142 -~~~~~------------~~----------i~~P~Lii~G~~D~~~~~~~-----~~~~~-----------~~~~~~~~i 182 (208)
T d1imja_ 142 -NAANY------------AS----------VKTPALIVYGDQDPMGQTSF-----EHLKQ-----------LPNHRVLIM 182 (208)
T ss_dssp -CHHHH------------HT----------CCSCEEEEEETTCHHHHHHH-----HHHTT-----------SSSEEEEEE
T ss_pred -ccccc------------cc----------cccccccccCCcCcCCcHHH-----HHHHh-----------CCCCeEEEE
Confidence 01111 12 67899999999998776431 22332 234688899
Q ss_pred CCCCCCCCCchHHHHHHHHHHHHHHHH
Q 004766 698 RKAGHGVGLPTQKMIDEAADRYGFMAK 724 (732)
Q Consensus 698 ~~~gH~~~~~~~~~~~~~~~~~~fl~~ 724 (732)
+++||...... -.+....+.+||.+
T Consensus 183 ~~~gH~~~~~~--p~~~~~~l~~Fl~~ 207 (208)
T d1imja_ 183 KGAGHPCYLDK--PEEWHTGLLDFLQG 207 (208)
T ss_dssp TTCCTTHHHHC--HHHHHHHHHHHHHT
T ss_pred CCCCCchhhhC--HHHHHHHHHHHHhc
Confidence 99999642211 12445667788753
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.61 E-value=1.5e-13 Score=147.72 Aligned_cols=320 Identities=11% Similarity=0.038 Sum_probs=183.5
Q ss_pred EeCCEEEEEEEcCCC----CeeEEEEEeCCCCCceEEeCCCCcCCCCCEEEEeEEECCCCcEEEEEEeccCCceEEEEEE
Q 004766 88 KRGNKYFYFHNTGLQ----PQSVLYVQDSLDAKAKVLLDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLM 163 (732)
Q Consensus 88 ~~g~~~~~~~~~~~~----~~~~l~~r~~~~~~~~~l~D~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~ 163 (732)
++|.+++|..+.... ....+|+.+...+..+.|..... +...+..+.|||||++|||+.+ .+||++
T Consensus 70 pD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~----~~~~l~~~~wSPDG~~iafv~~------~nl~~~ 139 (465)
T d1xfda1 70 PDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEV----SNAKLQYAGWGPKGQQLIFIFE------NNIYYC 139 (465)
T ss_dssp TTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTC----CSCCCSBCCBCSSTTCEEEEET------TEEEEE
T ss_pred CCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccC----CccccceeeeccCCceEEEEec------ceEEEE
Confidence 366676665432211 11335555554555444433221 1122456889999999999963 279999
Q ss_pred ECCCCceecccccce-------------------eeeeEEEEeCCcEEEEEEecCCCCC----CCCCCCCc--------c
Q 004766 164 RIEDQIVEADALSWF-------------------KFSSIAWTHDSKGFFYSRYPAPKEG----KDMDAGTE--------T 212 (732)
Q Consensus 164 dl~~g~~~~~~~~~~-------------------~~~~~~WspDg~~l~y~~~~~~~~~----~~~~~~~~--------~ 212 (732)
++.++.....+..+. ...++.|||||++|+|.+.+..... ........ .
T Consensus 140 ~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp 219 (465)
T d1xfda1 140 AHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYP 219 (465)
T ss_dssp SSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECC
T ss_pred ecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeecccccccccceeeeeecc
Confidence 988776432221110 0146789999999999987654311 00000000 0
Q ss_pred cC---CcccEEEEEECCCCCCCCeEEEec---CCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccc
Q 004766 213 DS---NLYHEFYYHFLGTKQSEDILCWKD---PEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGF 286 (732)
Q Consensus 213 ~~---~~~~~v~~~~lgt~~~~~~~v~~~---~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~ 286 (732)
.. .-..+++++++.++... ...... .....+...+.|+||++.++...++.. ....++++|..++.+
T Consensus 220 ~~G~~np~~~l~v~d~~~~~~~-~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q-~~~~i~~~d~~tg~~----- 292 (465)
T d1xfda1 220 KAGSENPSISLHVIGLNGPTHD-LEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQ-NVSILTLCDATTGVC----- 292 (465)
T ss_dssp BTTSCCCEEEEEEEESSSSCCC-EECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTS-CEEEEEEEETTTCCE-----
T ss_pred ccCCCCCceeEEEEecCCCcEE-EEEeccCcCccccceeeeeEEcCCCeEEEEEEcccc-ccceEEEEcCCCCcE-----
Confidence 00 11135788888665332 111110 011235668899999997777666544 467799999988642
Q ss_pred cccCCCCCcEEeeec----c---cceEEEEEecCCeEEEEeC-CCCCCceEEEEeCCC------CCCceEeccCCCCCce
Q 004766 287 KKRDGLLPFVKLIDG----F---DAQYEVIANDDTVFTFLTN-KDAPKYKIIRVDLKE------PNDWFEVIPEAERDVL 352 (732)
Q Consensus 287 ~~~~~~~~~~~l~~~----~---~~~~~~~s~dg~~l~~~s~-~~~~~~~l~~~d~~~------~~~~~~l~~~~~~~~l 352 (732)
+.+... + ......|++||+.++|+.. .......++.+.+.. +...+.|+... ..+
T Consensus 293 ---------~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~--w~V 361 (465)
T d1xfda1 293 ---------TKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGD--WDV 361 (465)
T ss_dssp ---------EEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSS--SCE
T ss_pred ---------EEEEEEcCCceEeccCCceeEccCCCeeEEEEeeeecccCceEEEEeccccccCCCceeEEeccCC--ceE
Confidence 222211 1 1122468999998877632 222344566665421 11234555443 334
Q ss_pred eEE-EEec-CCEEEEEEecCC--eeEEEEEeCCCCceeeeccc---ccceeeEeecccCCcEEEEEEecCCCCceEEEEE
Q 004766 353 ESA-TAVN-LNQMIVSYLSDV--KYVLQIRDLKNGSLLHQLPI---EIGSVNAISARREDSVVFISFTSFLIPGIVYQCN 425 (732)
Q Consensus 353 ~~~-~~~~-~~~l~~~~~~~g--~~~l~~~d~~~g~~~~~l~~---~~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d 425 (732)
..+ .+.. ++.+||.+..+. ..+||.++++.+...+.|+. ..+....+++|+++++++..++++..|. +..++
T Consensus 362 ~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~~~~lt~~~~~~~~~~~~~~S~~~~y~v~~~s~~~~P~-~~~~~ 440 (465)
T d1xfda1 362 TKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGPGVPM-VTVHN 440 (465)
T ss_dssp EEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECCSSSSCC-EEEEE
T ss_pred EEEEEEcCCCCEEEEEEeCCCCCceEEEEEECCCCCcceeeccccCCCCCEEEEEECCCCCEEEEEeecCCCCe-EEEEE
Confidence 444 4654 367888887653 45899999985444344442 2444557788999999999999998776 66677
Q ss_pred CCCCCCceEEEE
Q 004766 426 LKTETPEMKIFR 437 (732)
Q Consensus 426 ~~~~~~~~~~l~ 437 (732)
..+++ .+..|.
T Consensus 441 ~~~~~-~~~~Le 451 (465)
T d1xfda1 441 TTDKK-KMFDLE 451 (465)
T ss_dssp TTTCC-EEEEEE
T ss_pred CCCCC-EEEEEc
Confidence 77775 344553
|
| >d1mtza_ c.69.1.7 (A:) Tricorn interacting factor F1 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Proline iminopeptidase-like domain: Tricorn interacting factor F1 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.61 E-value=3.7e-16 Score=156.72 Aligned_cols=124 Identities=19% Similarity=0.157 Sum_probs=85.0
Q ss_pred EEccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccc
Q 004766 456 VPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGAL 535 (732)
Q Consensus 456 ~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~ 535 (732)
|..-|| .+|.+..+-.+ +..|+||++||+++.+. .|...+..+++ +||.|+++|.||.|.....
T Consensus 6 ~~~~~g-~~i~y~~~g~~-----~~~~~iv~lHG~~g~~~--~~~~~~~~~~~-~~~~vi~~D~~G~G~S~~~------- 69 (290)
T d1mtza_ 6 YAKVNG-IYIYYKLCKAP-----EEKAKLMTMHGGPGMSH--DYLLSLRDMTK-EGITVLFYDQFGCGRSEEP------- 69 (290)
T ss_dssp EEEETT-EEEEEEEECCS-----SCSEEEEEECCTTTCCS--GGGGGGGGGGG-GTEEEEEECCTTSTTSCCC-------
T ss_pred eEEECC-EEEEEEEcCCC-----CCCCeEEEECCCCCchH--HHHHHHHHHHH-CCCEEEEEeCCCCcccccc-------
Confidence 334589 99976655332 34588999999887643 34433445555 8999999999998864211
Q ss_pred cCCccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCcc
Q 004766 536 AKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVM 596 (732)
Q Consensus 536 ~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~ 596 (732)
.....+++++.+.+..++++- ...+++.++|+|+||.+++.++.++|++++++|+..|+.
T Consensus 70 ~~~~~~~~~~~~~l~~ll~~l-~~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 129 (290)
T d1mtza_ 70 DQSKFTIDYGVEEAEALRSKL-FGNEKVFLMGSSYGGALALAYAVKYQDHLKGLIVSGGLS 129 (290)
T ss_dssp CGGGCSHHHHHHHHHHHHHHH-HTTCCEEEEEETHHHHHHHHHHHHHGGGEEEEEEESCCS
T ss_pred ccccccccchhhhhhhhhccc-ccccccceecccccchhhhhhhhcChhhheeeeeccccc
Confidence 111223444544444444321 123589999999999999999999999999999887764
|
| >d1auoa_ c.69.1.14 (A:) Carboxylesterase {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/thioesterase 1 domain: Carboxylesterase species: Pseudomonas fluorescens [TaxId: 294]
Probab=99.61 E-value=7e-15 Score=141.54 Aligned_cols=191 Identities=17% Similarity=0.148 Sum_probs=123.0
Q ss_pred CCccEEEEEcCCCCccCCCCcChhHHHHHHhc--CcEEEEEccc------CCCCCchhHHhcccccC-CccHHHHHHHH-
Q 004766 479 GSHPCLLYGYGGFNISVTPSFSVSRTILMRHL--GAVFCIANIR------GGGEYGEEWHKGGALAK-KQNCFDDFISA- 548 (732)
Q Consensus 479 ~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~--G~~v~~~~~r------G~g~~g~~~~~~~~~~~-~~~~~~D~~~~- 548 (732)
...|+||++||..+.. ..|.. +...+... ++.+++++.+ +++-.+..|+....... .....+++.+.
T Consensus 12 ~~~~~Vi~lHG~G~~~--~~~~~-~~~~l~~~~~~~~~i~p~ap~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 88 (218)
T d1auoa_ 12 PADACVIWLHGLGADR--YDFMP-VAEALQESLLTTRFVLPQAPTRPVTINGGYEMPSWYDIKAMSPARSISLEELEVSA 88 (218)
T ss_dssp CCSEEEEEECCTTCCT--TTTHH-HHHHHHTTCTTEEEEECCCCEEEEGGGTTEEEECSSCEEECSSSCEECHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCh--hhHHH-HHHHHHHhCCCcEEEccCCCccccccCCCcccCcccccccccccccchHHHHHHHH
Confidence 3567999999964432 23432 33444423 4666666532 22223345654332221 22233333332
Q ss_pred --HHHHHH---cCCCCCCcEEEEecChhHHHHHHHH-hhCCCeeeEEEEcCCcccccccccCCCCCccccccCCCCCHHH
Q 004766 549 --SEYLIS---AGYTQSRKLCIEGGSNGGLLVGACI-NQRPDLFGCALAHVGVMDMLRYHKFTIGHAWVSDFGCSEEEEE 622 (732)
Q Consensus 549 --~~~l~~---~~~~d~~~i~i~G~S~GG~l~~~~~-~~~p~~f~a~v~~~p~~d~~~~~~~~~~~~~~~~~g~p~~~~~ 622 (732)
+..+++ +.-+|++||++.|+|+||.++..++ .+.+..|+++|+..+...... .. ......
T Consensus 89 ~~v~~li~~~~~~~i~~~ri~l~GfSqGg~~a~~~~l~~~~~~~~~~v~~~g~~~~~~-----------~~---~~~~~~ 154 (218)
T d1auoa_ 89 KMVTDLIEAQKRTGIDASRIFLAGFSQGGAVVFHTAFINWQGPLGGVIALSTYAPTFG-----------DE---LELSAS 154 (218)
T ss_dssp HHHHHHHHHHHHTTCCGGGEEEEEETHHHHHHHHHHHTTCCSCCCEEEEESCCCTTCC-----------TT---CCCCHH
T ss_pred HHHHHHHHHHHHhCCCCcceEEeeeCcchHHHHHHHHhcccccceeeeeccccCcccc-----------cc---cccchh
Confidence 333322 2346899999999999999998775 455778999999887542110 00 000000
Q ss_pred HHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeCCCCC
Q 004766 623 FYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGH 702 (732)
Q Consensus 623 ~~~~~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH 702 (732)
...+|+|++||.+|..||+.++.+++++|+++ |.++++++|+ .||
T Consensus 155 ------------------------~~~~pvl~~hG~~D~vvp~~~~~~~~~~L~~~----------g~~~~~~~~~-~gH 199 (218)
T d1auoa_ 155 ------------------------QQRIPALCLHGQYDDVVQNAMGRSAFEHLKSR----------GVTVTWQEYP-MGH 199 (218)
T ss_dssp ------------------------HHTCCEEEEEETTCSSSCHHHHHHHHHHHHTT----------TCCEEEEEES-CSS
T ss_pred ------------------------ccCCCEEEEecCCCCccCHHHHHHHHHHHHHC----------CCCEEEEEEC-CCC
Confidence 13569999999999999999999999999988 8999999996 789
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHhC
Q 004766 703 GVGLPTQKMIDEAADRYGFMAKMLG 727 (732)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~fl~~~l~ 727 (732)
.+.. ++...+.+||.+.||
T Consensus 200 ~i~~------~~~~~i~~wl~~~lg 218 (218)
T d1auoa_ 200 EVLP------QEIHDIGAWLAARLG 218 (218)
T ss_dssp SCCH------HHHHHHHHHHHHHHC
T ss_pred ccCH------HHHHHHHHHHHHhcC
Confidence 8742 345678999999987
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.60 E-value=5.9e-14 Score=145.13 Aligned_cols=281 Identities=11% Similarity=0.071 Sum_probs=166.3
Q ss_pred EE-eCCEEEEEEEcCCCCeeEEEEEeCCCCCceEEeCCCCcCCCCCEEEEeEEECCCCcEEEEEEeccCCceEEEEEEEC
Q 004766 87 FK-RGNKYFYFHNTGLQPQSVLYVQDSLDAKAKVLLDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRI 165 (732)
Q Consensus 87 ~~-~g~~~~~~~~~~~~~~~~l~~r~~~~~~~~~l~D~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl 165 (732)
++ +|.++.+..+ ..+|+.+..++....+ . +...+..++|||||++|+++....| ..|++||+
T Consensus 11 SP~dG~~~a~~~~------g~v~v~d~~~~~~~~~------~--~~~~v~~~~~spDg~~l~~~~~~~g---~~v~v~d~ 73 (360)
T d1k32a3 11 SPLDGDLIAFVSR------GQAFIQDVSGTYVLKV------P--EPLRIRYVRRGGDTKVAFIHGTREG---DFLGIYDY 73 (360)
T ss_dssp EECGGGCEEEEET------TEEEEECTTSSBEEEC------S--CCSCEEEEEECSSSEEEEEEEETTE---EEEEEEET
T ss_pred cCCCCCEEEEEEC------CeEEEEECCCCcEEEc------c--CCCCEEEEEECCCCCEEEEEEcCCC---CEEEEEEC
Confidence 45 6666666532 2477777644433332 1 1223678999999999999876544 47999999
Q ss_pred CCCceecccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeE
Q 004766 166 EDQIVEADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYI 245 (732)
Q Consensus 166 ~~g~~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~ 245 (732)
++|+.............++|||||+.|++...+ ..++.|++.++... .++.... ...
T Consensus 74 ~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~-------------------~~~~~~~~~~~~~~--~~~~~~~--~~~ 130 (360)
T d1k32a3 74 RTGKAEKFEENLGNVFAMGVDRNGKFAVVANDR-------------------FEIMTVDLETGKPT--VIERSRE--AMI 130 (360)
T ss_dssp TTCCEEECCCCCCSEEEEEECTTSSEEEEEETT-------------------SEEEEEETTTCCEE--EEEECSS--SCC
T ss_pred CCCcEEEeeCCCceEEeeeecccccccceeccc-------------------ccccccccccccee--eeeeccc--ccc
Confidence 999865443333334789999999999987533 36888998776432 3333222 233
Q ss_pred EEeEEecCCcEEEEEEecCC-----cceEEEEEEeCCCCCCCcccccccCCCCCcEEeeeccc-ceEEEEEecCCeEEEE
Q 004766 246 FSGHVTEDGQYLVMCIEENC-----DPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFD-AQYEVIANDDTVFTFL 319 (732)
Q Consensus 246 ~~~~~SpDg~~l~~~~~~~~-----~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~s~dg~~l~~~ 319 (732)
..++|||||++|++...... .....++++++.+++ ...++.... .....|+|||+.|++.
T Consensus 131 ~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~--------------~~~~~~~~~~~~~~~~spdg~~l~~~ 196 (360)
T d1k32a3 131 TDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK--------------IFAATTENSHDYAPAFDADSKNLYYL 196 (360)
T ss_dssp CCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE--------------EEECSCSSSBEEEEEECTTSCEEEEE
T ss_pred cchhhccceeeeeeeccccccceeeccccceeeeccccCc--------------eeeecccccccccccccCCCCEEEEE
Confidence 47899999999998775442 224668888987742 222222222 2223699999999988
Q ss_pred eCCCCC--------------CceEEEEeCCCCC-C---c--------------------eEeccCCCCCceeEEEEecCC
Q 004766 320 TNKDAP--------------KYKIIRVDLKEPN-D---W--------------------FEVIPEAERDVLESATAVNLN 361 (732)
Q Consensus 320 s~~~~~--------------~~~l~~~d~~~~~-~---~--------------------~~l~~~~~~~~l~~~~~~~~~ 361 (732)
+.+... ..+++.+.+.... . + ...++-. ......+...+++
T Consensus 197 s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 275 (360)
T d1k32a3 197 SYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVD-PGDYRMIIPLESS 275 (360)
T ss_dssp ESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCC-CBCEEEEEECSSE
T ss_pred eCCCceEcccccccceeeccccceEEEecccCccccceECCCcCcccccceeecccccceeecccC-cCceeEeeecCCC
Confidence 765321 1123333221110 0 0 0000000 0111223333322
Q ss_pred EEEEEEecC-----------CeeEEEEEeCCCCceeeecccccceeeEeecccCCcEEEEEEecCCCCceEEEEECCCCC
Q 004766 362 QMIVSYLSD-----------VKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 430 (732)
Q Consensus 362 ~l~~~~~~~-----------g~~~l~~~d~~~g~~~~~l~~~~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~~ 430 (732)
..++..... ....|++||+++++. ..+. +.+..++++|||+.|++...+ ..++.+|+.+++
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~~~---~~v~~~~~SpDG~~l~~~~~D----g~i~v~d~~~~~ 347 (360)
T d1k32a3 276 ILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKV-TEVK---NNLTDLRLSADRKTVMVRKDD----GKIYTFPLEKPE 347 (360)
T ss_dssp EEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCE-EEEE---EEEEEEEECTTSCEEEEEETT----SCEEEEESSCTT
T ss_pred ceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeE-EEec---CCcCEEEECCCCCEEEEEECC----CeEEEEECCCCC
Confidence 222222221 236889999986654 3333 457788899999988754433 579999998875
|
| >d1zd3a2 c.69.1.11 (A:225-547) Mammalian epoxide hydrolase, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Epoxide hydrolase domain: Mammalian epoxide hydrolase, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.60 E-value=1.9e-14 Score=146.94 Aligned_cols=120 Identities=15% Similarity=0.151 Sum_probs=87.6
Q ss_pred EEEEccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcc
Q 004766 454 VFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGG 533 (732)
Q Consensus 454 ~~~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~ 533 (732)
-.++..|| ++|++.-. |..|+||++||.+++.. .|... ...|.++||.|+++|.||.|.....
T Consensus 14 ~~v~~~~g-~~i~y~~~--------G~gp~vlllHG~~~~~~--~~~~~-~~~L~~~g~~vi~~D~~G~G~S~~~----- 76 (322)
T d1zd3a2 14 GYVTVKPR-VRLHFVEL--------GSGPAVCLCHGFPESWY--SWRYQ-IPALAQAGYRVLAMDMKGYGESSAP----- 76 (322)
T ss_dssp EEEEEETT-EEEEEEEE--------CCSSEEEEECCTTCCGG--GGTTH-HHHHHHTTCEEEEEECTTSTTSCCC-----
T ss_pred eEEEECCC-CEEEEEEE--------cCCCeEEEECCCCCCHH--HHHHH-HHHHHHCCCEEEEeccccccccccc-----
Confidence 34566799 99887543 34589999999877643 45543 3455558999999999998753211
Q ss_pred cccCCccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcC
Q 004766 534 ALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHV 593 (732)
Q Consensus 534 ~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~ 593 (732)
.......++++...+..+++. .+.+++.++|+|+||.++..++.++|++++++|+..
T Consensus 77 -~~~~~~~~~~~~~~i~~l~~~--l~~~~~~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~ 133 (322)
T d1zd3a2 77 -PEIEEYCMEVLCKEMVTFLDK--LGLSQAVFIGHDWGGMLVWYMALFYPERVRAVASLN 133 (322)
T ss_dssp -SCGGGGSHHHHHHHHHHHHHH--HTCSCEEEEEETHHHHHHHHHHHHCTTTEEEEEEES
T ss_pred -cccccccccccchhhhhhhhc--ccccccccccccchHHHHHHHHHhCCccccceEEEc
Confidence 111223567777777776665 345689999999999999999999999999998764
|
| >d1uxoa_ c.69.1.31 (A:) Hypothetical protein YdeN {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: YdeN-like domain: Hypothetical protein YdeN species: Bacillus subtilis [TaxId: 1423]
Probab=99.59 E-value=9e-15 Score=136.90 Aligned_cols=180 Identities=11% Similarity=-0.053 Sum_probs=113.9
Q ss_pred EEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCccHHHHHHHHHHHHHHcCCCCCCc
Q 004766 483 CLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSRK 562 (732)
Q Consensus 483 ~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~ 562 (732)
.||++||..++... .|...+...|+++||.|+++|++|.|.. .++|.+..++.+.. ....+
T Consensus 3 ~V~~vHG~~~~~~~-~~~~~l~~~L~~~G~~v~~~d~p~~~~~---------------~~~~~~~~l~~~~~---~~~~~ 63 (186)
T d1uxoa_ 3 QVYIIHGYRASSTN-HWFPWLKKRLLADGVQADILNMPNPLQP---------------RLEDWLDTLSLYQH---TLHEN 63 (186)
T ss_dssp EEEEECCTTCCTTS-TTHHHHHHHHHHTTCEEEEECCSCTTSC---------------CHHHHHHHHHTTGG---GCCTT
T ss_pred EEEEECCCCCCcch-hHHHHHHHHHHhCCCEEEEeccCCCCcc---------------hHHHHHHHHHHHHh---ccCCC
Confidence 58999997665433 3333445667779999999999987632 24555555554443 34578
Q ss_pred EEEEecChhHHHHHHHHhhCCCee--eEEEEcCCcccccccccCCCCCccccccCCCCCHHHHHHHHhcCcccCCCCCCC
Q 004766 563 LCIEGGSNGGLLVGACINQRPDLF--GCALAHVGVMDMLRYHKFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWE 640 (732)
Q Consensus 563 i~i~G~S~GG~l~~~~~~~~p~~f--~a~v~~~p~~d~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~sp~~~~~~~~~ 640 (732)
+.++|+|+||+++..++.++|+.. .++++.+|+........ .....+..+...... .+
T Consensus 64 ~~lvGhS~Gg~~a~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~------------~~--- 123 (186)
T d1uxoa_ 64 TYLVAHSLGCPAILRFLEHLQLRAALGGIILVSGFAKSLPTLQ-----MLDEFTQGSFDHQKI------------IE--- 123 (186)
T ss_dssp EEEEEETTHHHHHHHHHHTCCCSSCEEEEEEETCCSSCCTTCG-----GGGGGTCSCCCHHHH------------HH---
T ss_pred cEEEEechhhHHHHHHHHhCCccceeeEEeecccccccchhhh-----hhhhhhccccccccc------------cc---
Confidence 999999999999999999988743 44455555443221110 000111111111111 11
Q ss_pred CCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeCCCCCCCCCchH-HHHHHHHHHH
Q 004766 641 QNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQ-KMIDEAADRY 719 (732)
Q Consensus 641 ~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~-~~~~~~~~~~ 719 (732)
+.+|+|++||.+|.+||+.++.++++.+. .++++++++||....+.. ..-.....+.
T Consensus 124 -------~~~p~lvi~g~~D~~vp~~~~~~l~~~~~---------------~~~~~~~~~gH~~~~~~~~~~~~~~~~l~ 181 (186)
T d1uxoa_ 124 -------SAKHRAVIASKDDQIVPFSFSKDLAQQID---------------AALYEVQHGGHFLEDEGFTSLPIVYDVLT 181 (186)
T ss_dssp -------HEEEEEEEEETTCSSSCHHHHHHHHHHTT---------------CEEEEETTCTTSCGGGTCSCCHHHHHHHH
T ss_pred -------CCCCEEEEecCCCCCCCHHHHHHHHHHcC---------------CEEEEeCCCCCcCccccCcccHHHHHHHH
Confidence 45799999999999999999999887652 378899999997643321 1113344455
Q ss_pred HHHH
Q 004766 720 GFMA 723 (732)
Q Consensus 720 ~fl~ 723 (732)
+||.
T Consensus 182 ~~~~ 185 (186)
T d1uxoa_ 182 SYFS 185 (186)
T ss_dssp HHHH
T ss_pred HHHc
Confidence 6664
|
| >d1wb4a1 c.69.1.2 (A:803-1075) Feruloyl esterase domain of the cellulosomal xylanase y {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Feruloyl esterase domain of the cellulosomal xylanase y species: Clostridium thermocellum [TaxId: 1515]
Probab=99.59 E-value=1.4e-15 Score=152.02 Aligned_cols=224 Identities=9% Similarity=-0.095 Sum_probs=138.0
Q ss_pred ceEEEEEEEccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCC-cChhHHH-------HHHhcCcEEEEEccc
Q 004766 449 FHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPS-FSVSRTI-------LMRHLGAVFCIANIR 520 (732)
Q Consensus 449 ~~~~~~~~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~-~~~~~~~-------~l~~~G~~v~~~~~r 520 (732)
-+++.+.+++.+| + .++.|+.|+++++++++|+|+++||+.+...... +...... .....+++++.++.+
T Consensus 25 g~v~~~~~~~~~~-~-r~~~vylP~~y~~~k~yPvl~~lhG~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 102 (273)
T d1wb4a1 25 GRIVKETYTGING-T-KSLNVYLPYGYDPNKKYNIFYLMHGGGENENTIFSNDVKLQNILDHAIMNGELEPLIVVTPTFN 102 (273)
T ss_dssp CEEEEEEEEETTE-E-EEEEEEECTTCCTTSCCEEEEEECCTTCCTTSTTSTTTCHHHHHHHHHHHTSSCCEEEEECCSC
T ss_pred CeEEEEEEecCCC-e-EEEEEEeCCCCCCCCCceEEEEEeCCCCCcchhhhhccchhHHHHhhhhhhccCCceeeccccC
Confidence 3778899999888 5 5999999999888889999999999977643322 2221111 112237899999999
Q ss_pred CCCCCchhHHhcccccCCccHH-HHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCccccc
Q 004766 521 GGGEYGEEWHKGGALAKKQNCF-DDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDML 599 (732)
Q Consensus 521 G~g~~g~~~~~~~~~~~~~~~~-~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~ 599 (732)
+++..+..+............. .++...+..+..+..+|++|++|+|+|+||++++.++.++||+|+++++.+|.....
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~G~S~GG~~a~~~a~~~pd~f~a~~~~sg~~~~~ 182 (273)
T d1wb4a1 103 GGNCTAQNFYQEFRQNVIPFVESKYSTYAESTTPQGIAASRMHRGFGGFAMGGLTTWYVMVNCLDYVAYFMPLSGDYWYG 182 (273)
T ss_dssp STTCCTTTHHHHHHHTHHHHHHHHSCCSCSSCSHHHHHTTGGGEEEEEETHHHHHHHHHHHHHTTTCCEEEEESCCCCBS
T ss_pred CCCCccccchhcccccccchhhhhhhhhhhhhhhhcccCCccceEEEeeCCcchhhhhhhhcCCCcceEEEEeCcccccC
Confidence 8877776655443222211111 111122233334445799999999999999999999999999999999999875432
Q ss_pred ccccCCCCCccccccCCCCCHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhh
Q 004766 600 RYHKFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVL 679 (732)
Q Consensus 600 ~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~ 679 (732)
.... ... ......... ..... ...++++.+|..|. +......+.+.+.+..
T Consensus 183 ~~~~--------~~~-----~~~~~~~~~----~~~~~----------~~~~~~~~~g~~~~--~~~~~~~~~~~~~~~~ 233 (273)
T d1wb4a1 183 NSPQ--------DKA-----NSIAEAINR----SGLSK----------REYFVFAATGSEDI--AYANMNPQIEAMKALP 233 (273)
T ss_dssp SSHH--------HHH-----HHHHHHHHH----HTCCT----------TSCEEEEEEETTCT--THHHHHHHHHHHHTST
T ss_pred CCcc--------ccc-----ccchhhhhh----hhhcc----------cceEEEEecCCCCc--ccccchhHHHHHHHHH
Confidence 2110 000 000000000 11111 34567777777664 4445555656555431
Q ss_pred cCCCCCCCCCCCEEEEEeCCCCCC
Q 004766 680 CTSLENSPQTNPIIGRIERKAGHG 703 (732)
Q Consensus 680 ~~~~~~~~~~~~~~~~~~~~~gH~ 703 (732)
.........+..+.+.+++++||.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~ggH~ 257 (273)
T d1wb4a1 234 HFDYTSDFSKGNFYFLVAPGATHW 257 (273)
T ss_dssp TCCBBSCTTTCCEEEEEETTCCSS
T ss_pred HHHHHHHhcCCCEEEEEECCCccC
Confidence 111122344667888899999994
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.59 E-value=4.6e-14 Score=140.94 Aligned_cols=251 Identities=10% Similarity=0.058 Sum_probs=151.2
Q ss_pred EEECCC--CcEEEEEEeccCCceEEEEEEECCCCceecccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccC
Q 004766 137 VSVSED--AKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDS 214 (732)
Q Consensus 137 ~~~SPD--G~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~ 214 (732)
+.+||| |++|||+.. | +||++|+++|+..+.+........++|||||++|+|++.... .
T Consensus 4 ~~~sPdi~G~~v~f~~~--~----dl~~~d~~~g~~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~-------------~ 64 (281)
T d1k32a2 4 LLLNPDIHGDRIIFVCC--D----DLWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGS-------------S 64 (281)
T ss_dssp CCEEEEEETTEEEEEET--T----EEEEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEEST-------------T
T ss_pred cccCCCCCCCEEEEEeC--C----cEEEEECCCCCEEEEecCCCcccCEEECCCCCEEEEEEeeCC-------------C
Confidence 457899 999999953 2 699999999986554433333478999999999999976431 1
Q ss_pred CcccEEEEEECCCCCCCCeEEEecC----CCCeeEEEeEEecCCcEEEEEEecCCc-ceEEEEEEeCCCCCCCccccccc
Q 004766 215 NLYHEFYYHFLGTKQSEDILCWKDP----EHPKYIFSGHVTEDGQYLVMCIEENCD-PVNKVYYCDLSALPEGLEGFKKR 289 (732)
Q Consensus 215 ~~~~~v~~~~lgt~~~~~~~v~~~~----~~~~~~~~~~~SpDg~~l~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~~~ 289 (732)
....+||++++.++.... |.... ........+.|||||+.|++....... ....++.++..++.
T Consensus 65 ~~~~~i~~~~~~~g~~~~--lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~--------- 133 (281)
T d1k32a2 65 LNTADLYFYNGENGEIKR--ITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGIN--------- 133 (281)
T ss_dssp CCEEEEEEEETTTTEEEE--CCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTE---------
T ss_pred CCceEEEEEEecCCceEE--eeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCce---------
Confidence 233579999987764332 11110 001122467899999999987654331 23456666766531
Q ss_pred CCCCCcEEeeecccceEEEEEecCCeEEEEeCCCCCC--------ceEEEEeCCCCCCceEeccCCCCCceeEEEEecCC
Q 004766 290 DGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPK--------YKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLN 361 (732)
Q Consensus 290 ~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~--------~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~ 361 (732)
...... ......+.+++..+++........ ............ ...++... .....+.+.+ +
T Consensus 134 -----~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~-~ 202 (281)
T d1k32a2 134 -----FVPLNL--GPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGA-FKKIVDMS--THVSSPVIVG-H 202 (281)
T ss_dssp -----EEECCS--CSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTE-EEEEECCS--SCCEEEEEET-T
T ss_pred -----eEEecC--CccceeeecCCCeEEEeeccccceeeeeccCCcceeeeeccccc-eeeccCCc--cccceeeeec-c
Confidence 112111 112234667777777665432211 011111111111 12222222 2334455666 6
Q ss_pred EEEEEEecCCeeEEEEEeCCCCceeeecccccceeeEeecccCCcEEEEEEecCCCCceEEEEECCCCCCceEEEE
Q 004766 362 QMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTETPEMKIFR 437 (732)
Q Consensus 362 ~l~~~~~~~g~~~l~~~d~~~g~~~~~l~~~~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~~~~~~~l~ 437 (732)
.+++....++..+|+++|+++++ .++|+.... .....+++||+.|+|... ..+|.+|+++++ .+.+.
T Consensus 203 ~~~~~~~~~~~~~l~~~d~~g~~-~~~lt~~~~-~~~~~~SpDG~~I~f~~~-----~~l~~~d~~~g~--~~~i~ 269 (281)
T d1k32a2 203 RIYFITDIDGFGQIYSTDLDGKD-LRKHTSFTD-YYPRHLNTDGRRILFSKG-----GSIYIFNPDTEK--IEKIE 269 (281)
T ss_dssp EEEEEECTTSSCEEEEEETTSCS-CEECCCCCS-SCEEEEEESSSCEEEEET-----TEEEEECTTTCC--EEECC
T ss_pred ccceecccccccceEEEeCCCCc-eEEeecCCC-cccccCcCCCCEEEEEeC-----CEEEEEECCCCC--EEEec
Confidence 78888888888999999998554 477775422 222356799999887543 479999999885 55543
|
| >d1a8sa_ c.69.1.12 (A:) Chloroperoxidase F {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloperoxidase domain: Chloroperoxidase F species: Pseudomonas fluorescens [TaxId: 294]
Probab=99.59 E-value=1.9e-14 Score=142.83 Aligned_cols=222 Identities=18% Similarity=0.097 Sum_probs=131.6
Q ss_pred EEEccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhccc
Q 004766 455 FVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGA 534 (732)
Q Consensus 455 ~~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~ 534 (732)
+|++.|| ++|.+... |+.|.||++||..+... .|.... ..|.++||.|+++|.||.|....
T Consensus 2 ~f~~~dG-~~i~y~~~--------G~g~pvvllHG~~~~~~--~~~~~~-~~l~~~~~~vi~~D~~G~G~S~~------- 62 (273)
T d1a8sa_ 2 TFTTRDG-TQIYYKDW--------GSGQPIVFSHGWPLNAD--SWESQM-IFLAAQGYRVIAHDRRGHGRSSQ------- 62 (273)
T ss_dssp EEECTTS-CEEEEEEE--------SCSSEEEEECCTTCCGG--GGHHHH-HHHHHTTCEEEEECCTTSTTSCC-------
T ss_pred EEEeeCC-cEEEEEEE--------CCCCeEEEECCCCCCHH--HHHHHH-HHHHhCCCEEEEEechhcCcccc-------
Confidence 4778899 98866533 34567889999877543 354444 44544999999999999886432
Q ss_pred ccCCccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHH-HHhhCCCeeeEEEEcCCcccccccccCCCCCc----
Q 004766 535 LAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGA-CINQRPDLFGCALAHVGVMDMLRYHKFTIGHA---- 609 (732)
Q Consensus 535 ~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~-~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~~~---- 609 (732)
.....+++++.+.+..+++. .+.++..++|+|+||.+++. ++..+|++++++++..+...............
T Consensus 63 -~~~~~~~~~~~~~~~~~l~~--l~~~~~~lvg~s~gG~~~~~~~a~~~p~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~ 139 (273)
T d1a8sa_ 63 -PWSGNDMDTYADDLAQLIEH--LDLRDAVLFGFSTGGGEVARYIGRHGTARVAKAGLISAVPPLMLKTEANPGGLPMEV 139 (273)
T ss_dssp -CSSCCSHHHHHHHHHHHHHH--TTCCSEEEEEETHHHHHHHHHHHHHCSTTEEEEEEESCCCSCCBCCSSCTTSBCHHH
T ss_pred -ccccccccchHHHHHHHHHh--cCccceeeeeeccCCccchhhhhhhhhhccceeEEEecccccccccccccccchhhh
Confidence 11223556666665555544 23457889999998866555 45567999888877655332111000000000
Q ss_pred --------------c--------ccccCCC---CCHHHHH-------------------HHHhcCcccCCCCCCCCCCCC
Q 004766 610 --------------W--------VSDFGCS---EEEEEFY-------------------WLIKYSPLHNVRRPWEQNPDK 645 (732)
Q Consensus 610 --------------~--------~~~~g~p---~~~~~~~-------------------~~~~~sp~~~~~~~~~~~~~~ 645 (732)
. ...+..+ ......+ .+...+....+++
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 211 (273)
T d1a8sa_ 140 FDGIRQASLADRSQLYKDLASGPFFGFNQPGAKSSAGMVDWFWLQGMAAGHKNAYDCIKAFSETDFTEDLKK-------- 211 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSSSTTSTTCCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHCCCHHHHHT--------
T ss_pred hhhHHHHHHHHHHHHHHHHhhhhhhhcccchhhhhHHHHHHHHHhhcccchhhhhhhHHHhhhhhhhHHHHh--------
Confidence 0 0000011 1111111 1111222222233
Q ss_pred CCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeCCCCCCCCCchHHHHHHHHHHHHHHH
Q 004766 646 PFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMA 723 (732)
Q Consensus 646 ~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~ 723 (732)
+..|+|+++|.+|..||+..+.++.+++.. .+.+++++++||....... .+..+.+.+||.
T Consensus 212 --i~~Pvlii~g~~D~~~~~~~~~~~~~~~~~-------------~~~~~~i~~~gH~~~~e~p--~~~~~~i~~Fl~ 272 (273)
T d1a8sa_ 212 --IDVPTLVVHGDADQVVPIEASGIASAALVK-------------GSTLKIYSGAPHGLTDTHK--DQLNADLLAFIK 272 (273)
T ss_dssp --CCSCEEEEEETTCSSSCSTTTHHHHHHHST-------------TCEEEEETTCCSCHHHHTH--HHHHHHHHHHHH
T ss_pred --hccceEEEecCCCCCCCHHHHHHHHHHhCC-------------CCEEEEECCCCCchHHhCH--HHHHHHHHHHcC
Confidence 678999999999999999888777766532 2578889999998643322 345566778874
|
| >d1c4xa_ c.69.1.10 (A:) 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (BPHD) {Rhodococcus sp., strain rha1 [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carbon-carbon bond hydrolase domain: 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (BPHD) species: Rhodococcus sp., strain rha1 [TaxId: 1831]
Probab=99.59 E-value=4e-15 Score=149.04 Aligned_cols=226 Identities=12% Similarity=0.022 Sum_probs=127.6
Q ss_pred eeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCC-CcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCc--
Q 004766 463 TKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTP-SFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQ-- 539 (732)
Q Consensus 463 ~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~-~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~-- 539 (732)
.++++...-+ ...|+||++||..+..... .|.. ....|+ +||.|+++|.||.|..... .....
T Consensus 14 ~~~h~~~~G~------~~~p~ivllHG~~~~~~~~~~~~~-~~~~L~-~~~~vi~~D~~G~G~S~~~------~~~~~~~ 79 (281)
T d1c4xa_ 14 LASHALVAGD------PQSPAVVLLHGAGPGAHAASNWRP-IIPDLA-ENFFVVAPDLIGFGQSEYP------ETYPGHI 79 (281)
T ss_dssp SCEEEEEESC------TTSCEEEEECCCSTTCCHHHHHGG-GHHHHH-TTSEEEEECCTTSTTSCCC------SSCCSSH
T ss_pred EEEEEEEEec------CCCCEEEEECCCCCCCcHHHHHHH-HHHHHh-CCCEEEEEeCCCCcccccc------ccccccc
Confidence 6777665432 2468999999976543221 2333 345567 7999999999998754221 11111
Q ss_pred -cHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCccccccc--------ccCCCCCc-
Q 004766 540 -NCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRY--------HKFTIGHA- 609 (732)
Q Consensus 540 -~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~--------~~~~~~~~- 609 (732)
..+++.+..+..+++. ...+++.++|+|+||.++..++.++|++++++|+..|....... ........
T Consensus 80 ~~~~~~~~~~i~~~i~~--~~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvli~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (281)
T d1c4xa_ 80 MSWVGMRVEQILGLMNH--FGIEKSHIVGNSMGGAVTLQLVVEAPERFDKVALMGSVGAPMNARPPELARLLAFYADPRL 157 (281)
T ss_dssp HHHHHHHHHHHHHHHHH--HTCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSSCCSSCCHHHHHHHTGGGSCCH
T ss_pred hhhHHHhhhhccccccc--cccccceeccccccccccccccccccccccceEEeccccCccccchhHHHHHHHhhhhccc
Confidence 2234444444433333 12358999999999999999999999999999887764321110 00000000
Q ss_pred --c---ccc-cCCCCC----HHHHH------------HH-----Hhc-CcccCCCCCCCCCCCCCCCCCeEEEEeeCCCC
Q 004766 610 --W---VSD-FGCSEE----EEEFY------------WL-----IKY-SPLHNVRRPWEQNPDKPFQYPSTLLLTADHDD 661 (732)
Q Consensus 610 --~---~~~-~g~p~~----~~~~~------------~~-----~~~-sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~ 661 (732)
+ ... ..++.. ..... .+ ..+ ..+...... ......+..|+|+++|++|.
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~i~~P~lii~G~~D~ 234 (281)
T d1c4xa_ 158 TPYRELIHSFVYDPENFPGMEEIVKSRFEVANDPEVRRIQEVMFESMKAGMESLVIP---PATLGRLPHDVLVFHGRQDR 234 (281)
T ss_dssp HHHHHHHHTTSSCSTTCTTHHHHHHHHHHHHHCHHHHHHHHHHHHHHSSCCGGGCCC---HHHHTTCCSCEEEEEETTCS
T ss_pred chhhhhhhhhcccccccchhhhHHHHHhhhcccchhhhhhhhhhhHHhhhhhhhccc---hhhhhhhccceEEEEeCCCC
Confidence 0 001 111110 00000 00 000 000000000 00011378899999999999
Q ss_pred CCCchHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeCCCCCCCCCchHHHHHHHHHHHHHHH
Q 004766 662 RVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMA 723 (732)
Q Consensus 662 ~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~ 723 (732)
.+|+..+.++.+.+. ..++++++++||...-... .+....+.+||.
T Consensus 235 ~~~~~~~~~~~~~~~--------------~~~~~~i~~~gH~~~~e~p--~~~~~~i~~Fl~ 280 (281)
T d1c4xa_ 235 IVPLDTSLYLTKHLK--------------HAELVVLDRCGHWAQLERW--DAMGPMLMEHFR 280 (281)
T ss_dssp SSCTHHHHHHHHHCS--------------SEEEEEESSCCSCHHHHSH--HHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHCC--------------CCEEEEECCCCCchHHhCH--HHHHHHHHHHhC
Confidence 999988888776543 2578889999998643222 234455677874
|
| >d1va4a_ c.69.1.12 (A:) Arylesterase {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloperoxidase domain: Arylesterase species: Pseudomonas fluorescens [TaxId: 294]
Probab=99.59 E-value=1.5e-14 Score=143.34 Aligned_cols=222 Identities=17% Similarity=0.128 Sum_probs=133.9
Q ss_pred EEEccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhccc
Q 004766 455 FVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGA 534 (732)
Q Consensus 455 ~~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~ 534 (732)
.|.+.|| ++|.+... |..|+||++||..++.. .|.. ....|.++||.|+++|.||.|....
T Consensus 2 ~f~~~dG-~~l~y~~~--------G~g~~vv~lHG~~~~~~--~~~~-~~~~l~~~g~~vi~~D~~G~G~S~~------- 62 (271)
T d1va4a_ 2 TFVAKDG-TQIYFKDW--------GSGKPVLFSHGWLLDAD--MWEY-QMEYLSSRGYRTIAFDRRGFGRSDQ------- 62 (271)
T ss_dssp EEECTTS-CEEEEEEE--------SSSSEEEEECCTTCCGG--GGHH-HHHHHHTTTCEEEEECCTTSTTSCC-------
T ss_pred EEEeECC-eEEEEEEE--------cCCCeEEEECCCCCCHH--HHHH-HHHHHHhCCCEEEEEeccccccccc-------
Confidence 4677899 99976433 34567889999876542 3443 3455665899999999999886421
Q ss_pred ccCCccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHH-HHhhCCCeeeEEEEcCCcccccccccC-C--CCC--
Q 004766 535 LAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGA-CINQRPDLFGCALAHVGVMDMLRYHKF-T--IGH-- 608 (732)
Q Consensus 535 ~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~-~~~~~p~~f~a~v~~~p~~d~~~~~~~-~--~~~-- 608 (732)
.....+++++...+..+.+. .+.+++.++|+|+||.+++. ++.++|+++.++++..+.......... . ...
T Consensus 63 -~~~~~~~~~~~~~~~~~~~~--~~~~~~~~vg~s~gG~~~~~~~a~~~p~~v~~~v~~~~~~~~~~~~~~~~~~~~~~~ 139 (271)
T d1va4a_ 63 -PWTGNDYDTFADDIAQLIEH--LDLKEVTLVGFSMGGGDVARYIARHGSARVAGLVLLGAVTPLFGQKPDYPQGVPLDV 139 (271)
T ss_dssp -CSSCCSHHHHHHHHHHHHHH--HTCCSEEEEEETTHHHHHHHHHHHHCSTTEEEEEEESCCCSCCBCBTTBTTSBCHHH
T ss_pred -cccccccccccccceeeeee--cCCCcceeeccccccccccccccccccceeeEEEeecccccccccchhhhhhhhhhH
Confidence 12234566666666665554 34568999999998876654 556689999999887665432111100 0 000
Q ss_pred -------------cccc-----ccCC---C-CCHH----------------HHHHH---HhcCcccCCCCCCCCCCCCCC
Q 004766 609 -------------AWVS-----DFGC---S-EEEE----------------EFYWL---IKYSPLHNVRRPWEQNPDKPF 647 (732)
Q Consensus 609 -------------~~~~-----~~g~---p-~~~~----------------~~~~~---~~~sp~~~~~~~~~~~~~~~~ 647 (732)
.+.. .++. . .... ....+ ...+....+.+
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---------- 209 (271)
T d1va4a_ 140 FARFKTELLKDRAQFISDFNAPFYGINKGQVVSQGVQTQTLQIALLASLKATVDCVTAFAETDFRPDMAK---------- 209 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTGGGTCCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHCCCHHHHHH----------
T ss_pred HHHHHHHhhhhhhhhhhhhcchhhcccchhhhhhhHHHHHHhhhhhhhhhhhhhcccccchhhhhhhhhh----------
Confidence 0000 0010 0 0000 00111 11111112222
Q ss_pred CCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeCCCCCCCCCchHHHHHHHHHHHHHHH
Q 004766 648 QYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMA 723 (732)
Q Consensus 648 ~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~ 723 (732)
+..|+|+++|++|..+|+..+.++.+++.. .+++++++++||....... .+..+.+.+||.
T Consensus 210 i~~Pvl~i~g~~D~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~gH~~~~e~p--~~~~~~i~~fL~ 270 (271)
T d1va4a_ 210 IDVPTLVIHGDGDQIVPFETTGKVAAELIK-------------GAELKVYKDAPHGFAVTHA--QQLNEDLLAFLK 270 (271)
T ss_dssp CCSCEEEEEETTCSSSCGGGTHHHHHHHST-------------TCEEEEETTCCTTHHHHTH--HHHHHHHHHHHT
T ss_pred cccceeecccCCCCCCCHHHHHHHHHHhCC-------------CCEEEEECCCCCchHHhCH--HHHHHHHHHHHC
Confidence 678999999999999999988888766532 2578889999997643222 244556778875
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=1.4e-13 Score=147.93 Aligned_cols=285 Identities=13% Similarity=0.077 Sum_probs=171.2
Q ss_pred EEEEeCCCCCceEEeCCCCcCCCCCEEEEeEEECCCCcEEEEEEeccC----CceEEEEEEECCCCceecccc---ccee
Q 004766 107 LYVQDSLDAKAKVLLDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSG----SDWATIKLMRIEDQIVEADAL---SWFK 179 (732)
Q Consensus 107 l~~r~~~~~~~~~l~D~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G----~e~~~i~v~dl~~g~~~~~~~---~~~~ 179 (732)
|+..+..++.+++|++...+.... ...+.+||||++|+|..+... +....++++|+++|...+... ....
T Consensus 39 i~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~ 115 (465)
T d1xfda1 39 VRLWNVETNTSTVLIEGKKIESLR---AIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAK 115 (465)
T ss_dssp EEEBCGGGCCCEEEECTTTTTTTT---CSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCC
T ss_pred EEEEECCCCCEEEEEcCccccccc---cceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCccc
Confidence 666666667778889887664322 346789999999999876432 222478999999988543321 1222
Q ss_pred eeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCCcccEEEEEECCCCCCCCeEEEecCCCC---------------ee
Q 004766 180 FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHP---------------KY 244 (732)
Q Consensus 180 ~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~---------------~~ 244 (732)
...+.|||||+.|+|++.. .||+.+..++.... +...+.... ..
T Consensus 116 l~~~~wSPDG~~iafv~~~--------------------nl~~~~~~~~~~~~-lt~~g~~~~i~nG~~d~vyeee~~~~ 174 (465)
T d1xfda1 116 LQYAGWGPKGQQLIFIFEN--------------------NIYYCAHVGKQAIR-VVSTGKEGVIYNGLSDWLYEEEILKT 174 (465)
T ss_dssp CSBCCBCSSTTCEEEEETT--------------------EEEEESSSSSCCEE-EECCCBTTTEEEEECCHHHHHTTSSS
T ss_pred cceeeeccCCceEEEEecc--------------------eEEEEecCCCceEE-EecccCcceeeccccchhhhhhhccc
Confidence 3468999999999999632 46776665443211 111111110 11
Q ss_pred EEEeEEecCCcEEEEEEecCCc-----------------------------ceEEEEEEeCCCCCCCcccccccCCCCCc
Q 004766 245 IFSGHVTEDGQYLVMCIEENCD-----------------------------PVNKVYYCDLSALPEGLEGFKKRDGLLPF 295 (732)
Q Consensus 245 ~~~~~~SpDg~~l~~~~~~~~~-----------------------------~~~~l~~~d~~~~~~~~~~~~~~~~~~~~ 295 (732)
...+.|||||++|+|...+... ....++++|++++... +
T Consensus 175 ~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~------------~ 242 (465)
T d1xfda1 175 HIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHD------------L 242 (465)
T ss_dssp SEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCC------------E
T ss_pred cceEEECCCCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEE------------E
Confidence 2357799999999998643321 1235777777653211 1
Q ss_pred EEeee--ccc-ceE---EEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCce----eEEEEecCC-EEE
Q 004766 296 VKLID--GFD-AQY---EVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVL----ESATAVNLN-QMI 364 (732)
Q Consensus 296 ~~l~~--~~~-~~~---~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l----~~~~~~~~~-~l~ 364 (732)
..+.. ... ..+ ..|+++++.+++..++......|+.+|..++. .+.++.+..+..+ ....+++++ .++
T Consensus 243 ~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~-~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~ 321 (465)
T d1xfda1 243 EMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGV-CTKKHEDESEAWLHRQNEEPVFSKDGRKFF 321 (465)
T ss_dssp ECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCC-EEEEEEEECSSCCCCCCCCCEECTTSCSEE
T ss_pred EEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCc-EEEEEEEcCCceEeccCCceeEccCCCeeE
Confidence 10000 001 111 24888887666777887777889999999887 4555544322222 234566543 343
Q ss_pred E--EEecCCeeEEEEEeCC------CCceeeecccccceeeEe-ecccCCcEEEEEEecCCCCc--eEEEEECCCC
Q 004766 365 V--SYLSDVKYVLQIRDLK------NGSLLHQLPIEIGSVNAI-SARREDSVVFISFTSFLIPG--IVYQCNLKTE 429 (732)
Q Consensus 365 ~--~~~~~g~~~l~~~d~~------~g~~~~~l~~~~g~v~~~-~~s~d~~~l~~~~ss~~~p~--~~y~~d~~~~ 429 (732)
+ ....++..+++.+++. +|+..+.|+.....|..+ .++.+++.++|..+ ...|. .+|++++.++
T Consensus 322 fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vyF~a~-~~~p~~~hly~v~l~g~ 396 (465)
T d1xfda1 322 FIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLST-EDLPRRRQLYSANTVGN 396 (465)
T ss_dssp EEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEES-SSCTTCCEEEEECSSTT
T ss_pred EEEeeeecccCceEEEEeccccccCCCceeEEeccCCceEEEEEEEcCCCCEEEEEEe-CCCCCceEEEEEECCCC
Confidence 3 3456677777777542 244446677555555544 56788888888764 34454 5888888765
|
| >d1azwa_ c.69.1.7 (A:) Proline iminopeptidase {Xanthomonas campestris, pv. citri [TaxId: 339]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Proline iminopeptidase-like domain: Proline iminopeptidase species: Xanthomonas campestris, pv. citri [TaxId: 339]
Probab=99.58 E-value=1.9e-14 Score=146.74 Aligned_cols=126 Identities=14% Similarity=0.049 Sum_probs=90.5
Q ss_pred EEEEEEccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHh
Q 004766 452 HQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHK 531 (732)
Q Consensus 452 ~~~~~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~ 531 (732)
++-.+.+.|| .+|.+..+-. .+.|.||++||++++...+... ..++. .||.|+++|.||.|....
T Consensus 12 ~~~~i~~~dg-~~i~y~~~G~------~~g~pvvllHG~~g~~~~~~~~---~~~l~-~~~~Vi~~D~rG~G~S~~---- 76 (313)
T d1azwa_ 12 QQGSLKVDDR-HTLYFEQCGN------PHGKPVVMLHGGPGGGCNDKMR---RFHDP-AKYRIVLFDQRGSGRSTP---- 76 (313)
T ss_dssp EEEEEECSSS-CEEEEEEEEC------TTSEEEEEECSTTTTCCCGGGG---GGSCT-TTEEEEEECCTTSTTSBS----
T ss_pred CCCEEEeCCC-cEEEEEEecC------CCCCEEEEECCCCCCccchHHH---hHHhh-cCCEEEEEeccccCCCCc----
Confidence 4455677899 8888776642 2346788899998765443322 22234 899999999999875421
Q ss_pred cccccCCccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCcc
Q 004766 532 GGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVM 596 (732)
Q Consensus 532 ~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~ 596 (732)
.......+++++.+.+..+++. ...+++.|+|+|+||.+++.++.++|++++++|...++.
T Consensus 77 --~~~~~~~~~~~~~~dl~~~~~~--l~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lv~~~~~~ 137 (313)
T d1azwa_ 77 --HADLVDNTTWDLVADIERLRTH--LGVDRWQVFGGSWGSTLALAYAQTHPQQVTELVLRGIFL 137 (313)
T ss_dssp --TTCCTTCCHHHHHHHHHHHHHH--TTCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCC
T ss_pred --cccccchhHHHHHHHHHHHHHh--hccccceeEEecCCcHHHHHHHHHhhhceeeeeEecccc
Confidence 1122334567777777777765 334689999999999999999999999999998876643
|
| >d1a88a_ c.69.1.12 (A:) Chloroperoxidase L {Streptomyces lividans [TaxId: 1916]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloperoxidase domain: Chloroperoxidase L species: Streptomyces lividans [TaxId: 1916]
Probab=99.58 E-value=1.9e-14 Score=143.06 Aligned_cols=224 Identities=14% Similarity=0.069 Sum_probs=131.7
Q ss_pred EEEccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhccc
Q 004766 455 FVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGA 534 (732)
Q Consensus 455 ~~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~ 534 (732)
++++.|| ++|.+..+-|+ ..|+||++||..+... .|...... |.++||.|+++|.||.|....
T Consensus 2 ~i~~~dG-~~l~y~~~G~~------~~~~vv~lHG~~~~~~--~~~~~~~~-l~~~g~~vi~~D~~G~G~s~~------- 64 (275)
T d1a88a_ 2 TVTTSDG-TNIFYKDWGPR------DGLPVVFHHGWPLSAD--DWDNQMLF-FLSHGYRVIAHDRRGHGRSDQ------- 64 (275)
T ss_dssp EEECTTS-CEEEEEEESCT------TSCEEEEECCTTCCGG--GGHHHHHH-HHHTTCEEEEECCTTSTTSCC-------
T ss_pred EEEecCC-CEEEEEEecCC------CCCeEEEECCCCCCHH--HHHHHHHH-HHhCCCEEEEEeccccccccc-------
Confidence 4678899 99998877553 3467899999877543 45443434 444999999999999875432
Q ss_pred ccCCccHHHHHHHHHHHHHHcCCCCCCcEEEEecCh-hHHHHHHHHhhCCCeeeEEEEcCCcccccccccCCCC------
Q 004766 535 LAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSN-GGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIG------ 607 (732)
Q Consensus 535 ~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~-GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~~~~~------ 607 (732)
.....+++++.+.+..+++. .+.+++.++|+|+ ||.++..++.++|++++.+|+..+.............
T Consensus 65 -~~~~~~~~~~~~~~~~~l~~--l~~~~~~~vg~s~~G~~~~~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~ 141 (275)
T d1a88a_ 65 -PSTGHDMDTYAADVAALTEA--LDLRGAVHIGHSTGGGEVARYVARAEPGRVAKAVLVSAVPPVMVKSDTNPDGLPLEV 141 (275)
T ss_dssp -CSSCCSHHHHHHHHHHHHHH--HTCCSEEEEEETHHHHHHHHHHHHSCTTSEEEEEEESCCCSCCBCBTTBTTSBCHHH
T ss_pred -cccccccccccccccccccc--ccccccccccccccccchhhcccccCcchhhhhhhhcccccccccchhhhhhhhhhh
Confidence 11223455555555555443 2346788899887 5556666778899999999887654211100000000
Q ss_pred -------------Ccc-------ccccC--CC-CCHHHH----------------HHHHh---cCcccCCCCCCCCCCCC
Q 004766 608 -------------HAW-------VSDFG--CS-EEEEEF----------------YWLIK---YSPLHNVRRPWEQNPDK 645 (732)
Q Consensus 608 -------------~~~-------~~~~g--~p-~~~~~~----------------~~~~~---~sp~~~~~~~~~~~~~~ 645 (732)
..+ ...+. .. ...... +.+.. ......+.+
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-------- 213 (275)
T d1a88a_ 142 FDEFRAALAANRAQFYIDVPSGPFYGFNREGATVSQGLIDHWWLQGMMGAANAHYECIAAFSETDFTDDLKR-------- 213 (275)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHTTTTTTTSTTCCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHCCCHHHHHH--------
T ss_pred hhhhhhhhhhhhHHHHHhhhhhhhhhcccchhhHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhHHHHh--------
Confidence 000 00000 00 111111 11111 111111222
Q ss_pred CCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeCCCCCCCCCchHHHHHHHHHHHHHHH
Q 004766 646 PFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMA 723 (732)
Q Consensus 646 ~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~ 723 (732)
+..|+|+++|.+|..+|+.+..+..+++. ..+.+++++++||....... .+..+.+.+||.
T Consensus 214 --i~~P~l~i~G~~D~~~~~~~~~~~~~~~~-------------~~~~~~~i~~~gH~~~~e~p--~~~~~~i~~Fl~ 274 (275)
T d1a88a_ 214 --IDVPVLVAHGTDDQVVPYADAAPKSAELL-------------ANATLKSYEGLPHGMLSTHP--EVLNPDLLAFVK 274 (275)
T ss_dssp --CCSCEEEEEETTCSSSCSTTTHHHHHHHS-------------TTEEEEEETTCCTTHHHHCH--HHHHHHHHHHHH
T ss_pred --hccccceeecCCCCCcCHHHHHHHHHHhC-------------CCCEEEEECCCCCchHHhCH--HHHHHHHHHHHc
Confidence 67899999999999999887665554432 23688999999998654322 345567788875
|
| >d2rhwa1 c.69.1.10 (A:4-286) 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (BPHD) {Burkholderia xenovorans [TaxId: 36873]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carbon-carbon bond hydrolase domain: 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (BPHD) species: Burkholderia xenovorans [TaxId: 36873]
Probab=99.58 E-value=1.1e-14 Score=145.77 Aligned_cols=216 Identities=15% Similarity=0.007 Sum_probs=124.2
Q ss_pred CCccEEEEEcCCCCccCCCC-cChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCccHHHHHHHHHHHHHHcCC
Q 004766 479 GSHPCLLYGYGGFNISVTPS-FSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGY 557 (732)
Q Consensus 479 ~~~P~vv~~hG~~~~~~~~~-~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~ 557 (732)
|..|+||++||.......+. +...+..++. +||.|+++|.||.|..... ........+..+.+..+++.
T Consensus 28 G~G~~ivllHG~~~~~~~~~~~~~~l~~~~~-~g~~v~~~D~~G~G~S~~~-------~~~~~~~~~~~~~i~~li~~-- 97 (283)
T d2rhwa1 28 GNGETVIMLHGGGPGAGGWSNYYRNVGPFVD-AGYRVILKDSPGFNKSDAV-------VMDEQRGLVNARAVKGLMDA-- 97 (283)
T ss_dssp CCSSEEEEECCCSTTCCHHHHHTTTHHHHHH-TTCEEEEECCTTSTTSCCC-------CCSSCHHHHHHHHHHHHHHH--
T ss_pred cCCCeEEEECCCCCChhHHHHHHHHHHHHHH-CCCEEEEEeCCCCcccccc-------cccccccchhhhhccccccc--
Confidence 34588999999866543221 1222345556 9999999999998854221 11222333333444444443
Q ss_pred CCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCccccccccc-CC------------CCC--cc---ccccC-CC-
Q 004766 558 TQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHK-FT------------IGH--AW---VSDFG-CS- 617 (732)
Q Consensus 558 ~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~~-~~------------~~~--~~---~~~~g-~p- 617 (732)
.+.+++.++|+|+||.+++.++.++|++++++|+..|..-...... .. ... .+ ...+. .+
T Consensus 98 l~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (283)
T d2rhwa1 98 LDIDRAHLVGNAMGGATALNFALEYPDRIGKLILMGPGGLGPSMFAPMPMEGIKLLFKLYAEPSYETLKQMLQVFLYDQS 177 (283)
T ss_dssp HTCCCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCSCCCCCSSSCSSCHHHHHHHHHHHSCCHHHHHHHHHHHCSCGG
T ss_pred ccccccccccccchHHHHHHHHHHhhhhcceEEEeCCCcCCcchhhhhhHHHHHHHHHHhhhhhhhhHHHHHHHhhcccc
Confidence 2346899999999999999999999999999998776421110000 00 000 00 00000 10
Q ss_pred -CCHHH----HHHHHh-------------cCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhh
Q 004766 618 -EEEEE----FYWLIK-------------YSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVL 679 (732)
Q Consensus 618 -~~~~~----~~~~~~-------------~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~ 679 (732)
..++. +..+.. ..+...... .+....+..|+|+++|.+|..+|+.++.++.+.+.
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~i~~P~lii~G~~D~~~~~~~~~~~~~~~~--- 250 (283)
T d2rhwa1 178 LITEELLQGRWEAIQRQPEHLKNFLISAQKAPLSTWDV----TARLGEIKAKTFITWGRDDRFVPLDHGLKLLWNID--- 250 (283)
T ss_dssp GCCHHHHHHHHHHHHHCHHHHHHHHHHHHHSCGGGGCC----GGGGGGCCSCEEEEEETTCSSSCTHHHHHHHHHSS---
T ss_pred cCcHHHHHHHHHHhhhhhhhhhhhhhhhhhhhccccch----HHHHhhCCCCEEEEEeCCCCCcCHHHHHHHHHhCC---
Confidence 11111 000000 011110000 00011378899999999999999999888876653
Q ss_pred cCCCCCCCCCCCEEEEEeCCCCCCCCCchHHHHHHHHHHHHHHHH
Q 004766 680 CTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAK 724 (732)
Q Consensus 680 ~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~ 724 (732)
.+++++++++||....... .+..+.+.+||.+
T Consensus 251 -----------~~~~~~i~~~gH~~~~e~p--~~~~~~i~~FLk~ 282 (283)
T d2rhwa1 251 -----------DARLHVFSKCGHWAQWEHA--DEFNRLVIDFLRH 282 (283)
T ss_dssp -----------SEEEEEESSCCSCHHHHTH--HHHHHHHHHHHHH
T ss_pred -----------CCEEEEECCCCCchHHhCH--HHHHHHHHHHHhC
Confidence 2588899999997643322 3455667788864
|
| >d1b6ga_ c.69.1.8 (A:) Haloalkane dehalogenase {Xanthobacter autotrophicus [TaxId: 280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloalkane dehalogenase domain: Haloalkane dehalogenase species: Xanthobacter autotrophicus [TaxId: 280]
Probab=99.53 E-value=6.9e-14 Score=142.12 Aligned_cols=121 Identities=14% Similarity=0.093 Sum_probs=87.9
Q ss_pred ccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccC
Q 004766 458 SKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAK 537 (732)
Q Consensus 458 s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~ 537 (732)
+.|| .++++.-.-++ ...|+||++||..+... .|...... |.++||.|+++|.||.|.... ....
T Consensus 30 ~~~g-~~~~y~~~G~~-----~~~p~llllHG~~~~~~--~~~~~~~~-l~~~~~~vi~~Dl~G~G~S~~------~~~~ 94 (310)
T d1b6ga_ 30 GYPG-LRAHYLDEGNS-----DAEDVFLCLHGEPTWSY--LYRKMIPV-FAESGARVIAPDFFGFGKSDK------PVDE 94 (310)
T ss_dssp TCTT-CEEEEEEEECT-----TCSCEEEECCCTTCCGG--GGTTTHHH-HHHTTCEEEEECCTTSTTSCE------ESCG
T ss_pred CCCC-EEEEEEEecCC-----CCCCEEEEECCCCCchH--HHHHHHHH-hhccCceEEEeeecCcccccc------cccc
Confidence 4589 99886544332 34689999999877643 34443434 444999999999999886532 1111
Q ss_pred CccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCc
Q 004766 538 KQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGV 595 (732)
Q Consensus 538 ~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~ 595 (732)
...+++++.+.+..+++. ...+++.++|||+||.++..++.++|++++++|+..+.
T Consensus 95 ~~~~~~~~~~~l~~~l~~--l~~~~~~lvGhS~Gg~ia~~~A~~~P~~V~~lvl~~~~ 150 (310)
T d1b6ga_ 95 EDYTFEFHRNFLLALIER--LDLRNITLVVQDWGGFLGLTLPMADPSRFKRLIIMNAC 150 (310)
T ss_dssp GGCCHHHHHHHHHHHHHH--HTCCSEEEEECTHHHHHHTTSGGGSGGGEEEEEEESCC
T ss_pred ccccccccccchhhhhhh--ccccccccccceecccccccchhhhccccceEEEEcCc
Confidence 223677777777777765 23468999999999999999999999999999987654
|
| >d1pv1a_ c.69.1.34 (A:) Hypothetical esterase YJL068C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Hypothetical esterase YJL068C domain: Hypothetical esterase YJL068C species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.52 E-value=3.7e-14 Score=141.89 Aligned_cols=253 Identities=13% Similarity=0.058 Sum_probs=154.1
Q ss_pred eEEEEEEEcc-CCCeeEEEEEEEcCCCC-----CCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCC-
Q 004766 450 HVHQVFVPSK-DGSTKIPMFIVSKKNIK-----LDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGG- 522 (732)
Q Consensus 450 ~~~~~~~~s~-dG~~~i~~~~~~p~~~~-----~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~- 522 (732)
...++.+.|. -| .++++.++.|+++. +++++|+|.++||..+....+.-......++++.|.++++++.-..
T Consensus 13 ~~~~~s~~S~~l~-~~~~~~VyLP~~y~~~~~~~~~~yPVLYlLhG~~~~~~~w~~~~~~~~~~~~~~~~vv~~~~~p~~ 91 (299)
T d1pv1a_ 13 RLIKLSHNSNSTK-TSMNVNIYLPKHYYAQDFPRNKRIPTVFYLSGLTCTPDNASEKAFWQFQADKYGFAIVFPDTSPRG 91 (299)
T ss_dssp EEEEEEEECSSSS-SEEEEEEEECTTTTSCCCSSCTTBCEEEEECCTTCCHHHHHHHSCHHHHHHHHTCEEEECCSSCCS
T ss_pred EEEEEEEECcccC-CceEEEEEeCCcccccCcccCCCCCEEEEcCCCCCCHHHHHHhhhHHHHHHHcCCceecCCCcccc
Confidence 5677788775 57 89999999998763 3567999999999776532221112345667778999999874210
Q ss_pred ----C--------CCchhHHhcccc--cCCccHHHHHH--HHHHHHHHc-------CCCCCCcEEEEecChhHHHHHHHH
Q 004766 523 ----G--------EYGEEWHKGGAL--AKKQNCFDDFI--SASEYLISA-------GYTQSRKLCIEGGSNGGLLVGACI 579 (732)
Q Consensus 523 ----g--------~~g~~~~~~~~~--~~~~~~~~D~~--~~~~~l~~~-------~~~d~~~i~i~G~S~GG~l~~~~~ 579 (732)
+ +.+..|+..... ..+...++|++ ..+.++.+. ...++++.+|.|+||||+.++.++
T Consensus 92 ~~~~~~~~~~~~~g~~~~~y~d~~~~p~~~~~~~~~~i~~EL~p~i~~~~~~~~~r~~~~~~~~~I~G~SmGG~gAl~~a 171 (299)
T d1pv1a_ 92 DEVANDPEGSWDFGQGAGFYLNATQEPYAQHYQMYDYIHKELPQTLDSHFNKNGDVKLDFLDNVAITGHSMGGYGAICGY 171 (299)
T ss_dssp TTSCCCTTCCSSSSSSCCTTCBCCSHHHHTTCBHHHHHHTHHHHHHHHHHCC-----BCSSSSEEEEEETHHHHHHHHHH
T ss_pred cccCCcccccccccCCCccccccccCCcccccchHHHHHHHHHHHHHHhCCcccccccccccceEEEeecccHHHHHHHH
Confidence 0 011222222110 00111244443 233333332 223457899999999999999888
Q ss_pred hh--CCCeeeEEEEcCCcccccccccCCCCCccccccCCCCCHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEee
Q 004766 580 NQ--RPDLFGCALAHVGVMDMLRYHKFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTA 657 (732)
Q Consensus 580 ~~--~p~~f~a~v~~~p~~d~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g 657 (732)
.+ +|++|.++++.+|+.+........ ..+...+|.... ...+++|...+++.. ....+++++.+|
T Consensus 172 l~~~~p~~f~~~~s~s~~~~~~~~~~~~--~~~~~~~g~~~~-----~~~~~~~~~l~~~~~------~~~~~~i~~~~G 238 (299)
T d1pv1a_ 172 LKGYSGKRYKSCSAFAPIVNPSNVPWGQ--KAFKGYLGEEKA-----QWEAYDPCLLIKNIR------HVGDDRILIHVG 238 (299)
T ss_dssp HHTGGGTCCSEEEEESCCCCSTTSHHHH--HHHHHHSCC---------CGGGCHHHHGGGSC------CCTTCCEEEECC
T ss_pred HHhcCCCceEEEeeccCcCCcccccchh--hhhhhhcccchh-----hhhhcCHHHHHHHhh------ccCCcceeEecC
Confidence 65 599999999999987754321100 001112333211 123445554443310 024688999999
Q ss_pred CCCCCCCch-HHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeCCCCCCCCCchHHHHHHHHHHHHHHHHHhCC
Q 004766 658 DHDDRVVPL-HSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLGA 728 (732)
Q Consensus 658 ~~D~~v~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~ 728 (732)
.+|...+.. .+..|.++++++ .-..+++++..+|.||... . +.....+.+.|+.+.||+
T Consensus 239 ~~D~~~~~~~~~~~f~~~~~~~--------g~~~~~~~~~~~G~~Hsw~---y-W~~~i~~~l~f~a~~lgl 298 (299)
T d1pv1a_ 239 DSDPFLEEHLKPELLLEAVKAT--------SWQDYVEIKKVHGFDHSYY---F-VSTFVPEHAEFHARNLGL 298 (299)
T ss_dssp TTCTTTTTTCCTHHHHHHHTTS--------TTTTSEEEECCTTCCSSHH---H-HHHHHHHHHHHHHHHTTC
T ss_pred CCCcchhhhhcHHHHHHHHHhc--------CCCcceEEEecCCCCcCHH---H-HHHHHHHHHHHHHHhcCC
Confidence 999877754 357788888765 1124578888888889742 1 345666788999999986
|
| >d1ehya_ c.69.1.11 (A:) Bacterial epoxide hydrolase {Agrobacterium radiobacter [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Epoxide hydrolase domain: Bacterial epoxide hydrolase species: Agrobacterium radiobacter [TaxId: 358]
Probab=99.52 E-value=3.3e-13 Score=135.21 Aligned_cols=122 Identities=16% Similarity=0.058 Sum_probs=84.6
Q ss_pred EEEccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhccc
Q 004766 455 FVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGA 534 (732)
Q Consensus 455 ~~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~ 534 (732)
.+.. +| ++|++... |..|+||++||..++.. .|.. ....|+ .||.|+++|.||.|...... .
T Consensus 12 ~~~~-~~-~~l~y~~~--------G~gp~vv~lHG~~~~~~--~~~~-~~~~l~-~~~~vi~~D~~G~G~s~~~~----~ 73 (293)
T d1ehya_ 12 EVQL-PD-VKIHYVRE--------GAGPTLLLLHGWPGFWW--EWSK-VIGPLA-EHYDVIVPDLRGFGDSEKPD----L 73 (293)
T ss_dssp EEEC-SS-CEEEEEEE--------ECSSEEEEECCSSCCGG--GGHH-HHHHHH-TTSEEEEECCTTSTTSCCCC----T
T ss_pred EEEE-CC-EEEEEEEE--------CCCCeEEEECCCCCCHH--HHHH-HHHHHh-cCCEEEEecCCcccCCcccc----c
Confidence 3444 67 88876532 34688999999876542 3443 456677 79999999999987532210 0
Q ss_pred ccCCccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCcc
Q 004766 535 LAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVM 596 (732)
Q Consensus 535 ~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~ 596 (732)
......+++++...+..+++. ...+++.++|+|+||.+++.++.++|+++.++|+..|..
T Consensus 74 ~~~~~~~~~~~a~~~~~~~~~--l~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 133 (293)
T d1ehya_ 74 NDLSKYSLDKAADDQAALLDA--LGIEKAYVVGHDFAAIVLHKFIRKYSDRVIKAAIFDPIQ 133 (293)
T ss_dssp TCGGGGCHHHHHHHHHHHHHH--TTCCCEEEEEETHHHHHHHHHHHHTGGGEEEEEEECCSC
T ss_pred cccccccchhhhhHHHhhhhh--cCccccccccccccccchhcccccCccccceeeeeeccC
Confidence 111223456666666655554 234689999999999999999999999999999887753
|
| >d1brta_ c.69.1.12 (A:) Bromoperoxidase A2 {Streptomyces aureofaciens [TaxId: 1894]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloperoxidase domain: Bromoperoxidase A2 species: Streptomyces aureofaciens [TaxId: 1894]
Probab=99.51 E-value=5.7e-13 Score=132.24 Aligned_cols=215 Identities=14% Similarity=0.068 Sum_probs=120.6
Q ss_pred CCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCccHHHHHHHHHHHHHHcCCC
Q 004766 479 GSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYT 558 (732)
Q Consensus 479 ~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~ 558 (732)
|+.|.||++||.+++.. .|...... |.++||.|+++|.||.|.... .....+++++.+.+..+++. .
T Consensus 21 G~G~~ivllHG~~~~~~--~~~~~~~~-l~~~g~~vi~~D~~G~G~S~~--------~~~~~~~~~~~~dl~~~l~~--l 87 (277)
T d1brta_ 21 GTGQPVVLIHGFPLSGH--SWERQSAA-LLDAGYRVITYDRRGFGQSSQ--------PTTGYDYDTFAADLNTVLET--L 87 (277)
T ss_dssp CSSSEEEEECCTTCCGG--GGHHHHHH-HHHTTCEEEEECCTTSTTSCC--------CSSCCSHHHHHHHHHHHHHH--H
T ss_pred ccCCeEEEECCCCCCHH--HHHHHHHH-HHhCCCEEEEEeCCCCCcccc--------cccccchhhhhhhhhhhhhc--c
Confidence 45678999999877643 34443434 444999999999999876421 11223456666555555544 2
Q ss_pred CCCcEEEEecChhHHH-HHHHHhhCCCeeeEEEEcCCccccccccc-CCCCCc------------------cc----cc-
Q 004766 559 QSRKLCIEGGSNGGLL-VGACINQRPDLFGCALAHVGVMDMLRYHK-FTIGHA------------------WV----SD- 613 (732)
Q Consensus 559 d~~~i~i~G~S~GG~l-~~~~~~~~p~~f~a~v~~~p~~d~~~~~~-~~~~~~------------------~~----~~- 613 (732)
..+++.++|||+||.+ +..++.++|++++++|+..++........ ...... +. ..
T Consensus 88 ~~~~~~lvGhS~G~~~~~~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (277)
T d1brta_ 88 DLQDAVLVGFSTGTGEVARYVSSYGTARIAKVAFLASLEPFLLKTDDNPDGAAPQEFFDGIVAAVKADRYAFYTGFFNDF 167 (277)
T ss_dssp TCCSEEEEEEGGGHHHHHHHHHHHCSTTEEEEEEESCCCSCCBCBTTBTTCSBCHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred CcccccccccccchhhhhHHHHHhhhcccceEEEecCCCcccccchhhhhhhhhhhHHHHHHHhhhccchhhhhhccccc
Confidence 3468999999999754 55566678999999988765432211100 000000 00 00
Q ss_pred ------cCCCCCHHHH----HHH------Hhc-CcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHH
Q 004766 614 ------FGCSEEEEEF----YWL------IKY-SPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQ 676 (732)
Q Consensus 614 ------~g~p~~~~~~----~~~------~~~-sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~ 676 (732)
.......... ... ..+ .+...... ..+....+..|+|+++|.+|..+++....+..+++
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~i~~P~lii~g~~D~~~~~~~~~~~~~~~- 243 (277)
T d1brta_ 168 YNLDENLGTRISEEAVRNSWNTAASGGFFAAAAAPTTWYTD---FRADIPRIDVPALILHGTGDRTLPIENTARVFHKA- 243 (277)
T ss_dssp TTHHHHBTTTBCHHHHHHHHHHHHHSCHHHHHHGGGGTTCC---CTTTGGGCCSCEEEEEETTCSSSCGGGTHHHHHHH-
T ss_pred cccchhhhhhhhHHHhhhhhcccchhhhhhhhhhhhhhhhh---HHHHHHhcCccceeEeecCCCCcCHHHHHHHHHHh-
Confidence 0000000000 000 000 00000000 00112247889999999999999988765544432
Q ss_pred HhhcCCCCCCCCCCCEEEEEeCCCCCCCCCchHHHHHHHHHHHHHHHH
Q 004766 677 YVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAK 724 (732)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~ 724 (732)
....++++++++||...... ..+..+.+.+||.+
T Consensus 244 ------------~~~~~~~~i~~~gH~~~~e~--p~~~~~~i~~fL~k 277 (277)
T d1brta_ 244 ------------LPSAEYVEVEGAPHGLLWTH--AEEVNTALLAFLAK 277 (277)
T ss_dssp ------------CTTSEEEEETTCCTTHHHHT--HHHHHHHHHHHHHC
T ss_pred ------------CCCCEEEEECCCCCchHHhC--HHHHHHHHHHHHCc
Confidence 12357889999999864322 23455677888863
|
| >d1xkla_ c.69.1.20 (A:) Salicylic acid-binding protein 2 (SABP2) {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Hydroxynitrile lyase-like domain: Salicylic acid-binding protein 2 (SABP2) species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=99.50 E-value=6.6e-14 Score=136.72 Aligned_cols=218 Identities=12% Similarity=0.041 Sum_probs=125.6
Q ss_pred ccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCccHHHHHHHHHHHHHHcCCCCC
Q 004766 481 HPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQS 560 (732)
Q Consensus 481 ~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~ 560 (732)
.|.||++||.++.+. .|.. +...|+++||.|+++|.||.|..... .....++++....+..++..... .
T Consensus 2 G~~vvllHG~~~~~~--~w~~-~~~~L~~~g~~vi~~Dl~G~G~S~~~-------~~~~~~~~~~~~~~~~~~~~~~~-~ 70 (258)
T d1xkla_ 2 GKHFVLVHGACHGGW--SWYK-LKPLLEAAGHKVTALDLAASGTDLRK-------IEELRTLYDYTLPLMELMESLSA-D 70 (258)
T ss_dssp CCEEEEECCTTCCGG--GGTT-HHHHHHHTTCEEEECCCTTSTTCCCC-------GGGCCSHHHHHHHHHHHHHTSCS-S
T ss_pred CCcEEEECCCCCCHH--HHHH-HHHHHHhCCCEEEEecCCCCCCCCCC-------CCCCcchHHHHHHHhhhhhcccc-c
Confidence 367899999877643 4554 34566669999999999998864321 11223455555555555544332 3
Q ss_pred CcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCcccccccc------------cCC-C-CCccc-----ccc-------
Q 004766 561 RKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYH------------KFT-I-GHAWV-----SDF------- 614 (732)
Q Consensus 561 ~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~~~~------------~~~-~-~~~~~-----~~~------- 614 (732)
.++.++|+|+||.+++.++.++|++++.+|...|........ ... . ..... ...
T Consensus 71 ~~~~lvghS~Gg~va~~~a~~~p~~~~~lil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (258)
T d1xkla_ 71 EKVILVGHSLGGMNLGLAMEKYPQKIYAAVFLAAFMPDSVHNSSFVLEQYNERTPAENWLDTQFLPYGSPEEPLTSMFFG 150 (258)
T ss_dssp SCEEEEEETTHHHHHHHHHHHCGGGEEEEEEESCCCCCSSSCTTHHHHHHHHTSCTTTTTTCEEEECSCTTSCCEEEECC
T ss_pred ccccccccchhHHHHHHHhhhhccccceEEEecccCCCcccchHHHHHHHhhhhhhhhhhhhhhhhhhhhhhhccccccc
Confidence 578999999999999999999999999998876643211000 000 0 00000 000
Q ss_pred --------CCCCCHHHHHHHH-hcCcccCCCC---CCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhcCC
Q 004766 615 --------GCSEEEEEFYWLI-KYSPLHNVRR---PWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTS 682 (732)
Q Consensus 615 --------g~p~~~~~~~~~~-~~sp~~~~~~---~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~ 682 (732)
......+...... ...+...... ..+.......+..|+|+++|++|..+|+.....+.+.+..
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~----- 225 (258)
T d1xkla_ 151 PKFLAHKLYQLCSPEDLALASSLVRPSSLFMEDLSKAKYFTDERFGSVKRVYIVCTEDKGIPEEFQRWQIDNIGV----- 225 (258)
T ss_dssp HHHHHHHTSTTSCHHHHHHHHHHCCCBCCCHHHHHHCCCCCTTTGGGSCEEEEEETTCTTTTHHHHHHHHHHHCC-----
T ss_pred HHHHHHHhhhcccHHHHHHhhhhhhhhhhhhhhhhhhhhcccccccccceeEeeecCCCCCCHHHHHHHHHHCCC-----
Confidence 0000111111111 0111000000 0000000113678999999999999999888887766542
Q ss_pred CCCCCCCCCEEEEEeCCCCCCCCCchHHHHHHHHHHHHHHHHH
Q 004766 683 LENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKM 725 (732)
Q Consensus 683 ~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~ 725 (732)
.++++++++||....... .+..+.+.+|+.++
T Consensus 226 ---------~~~~~i~~~gH~~~~e~P--~~~~~~l~e~~~k~ 257 (258)
T d1xkla_ 226 ---------TEAIEIKGADHMAMLCEP--QKLCASLLEIAHKY 257 (258)
T ss_dssp ---------SEEEEETTCCSCHHHHSH--HHHHHHHHHHHHHC
T ss_pred ---------CEEEEECCCCCchHHhCH--HHHHHHHHHHHHhc
Confidence 478889999998643322 24555677777664
|
| >d1bn7a_ c.69.1.8 (A:) Haloalkane dehalogenase {Rhodococcus sp. [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloalkane dehalogenase domain: Haloalkane dehalogenase species: Rhodococcus sp. [TaxId: 1831]
Probab=99.50 E-value=7.9e-14 Score=139.81 Aligned_cols=115 Identities=13% Similarity=0.055 Sum_probs=84.4
Q ss_pred cCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCC
Q 004766 459 KDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKK 538 (732)
Q Consensus 459 ~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~ 538 (732)
.|| .+|++...-++ ..|+||++||.++... .|... ...|+ +||.|+++|.||.|.... ...
T Consensus 14 ~~g-~~i~y~~~G~~------~~p~lvllHG~~~~~~--~~~~~-~~~L~-~~~~vi~~d~~G~G~S~~--------~~~ 74 (291)
T d1bn7a_ 14 VLG-ERMHYVDVGPR------DGTPVLFLHGNPTSSY--LWRNI-IPHVA-PSHRCIAPDLIGMGKSDK--------PDL 74 (291)
T ss_dssp ETT-EEEEEEEESCS------SSSCEEEECCTTCCGG--GGTTT-HHHHT-TTSCEEEECCTTSTTSCC--------CSC
T ss_pred ECC-EEEEEEEeCCC------CCCeEEEECCCCCCHH--HHHHH-HHHHh-cCCEEEEEeCCCCccccc--------ccc
Confidence 489 89987765332 3477999999877643 34433 45566 799999999999886432 122
Q ss_pred ccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCC
Q 004766 539 QNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVG 594 (732)
Q Consensus 539 ~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p 594 (732)
..+++++...+..+++. .+-+++.++|+|+||.++..++.++|+.++++|+..+
T Consensus 75 ~~~~~~~~~~l~~~l~~--l~~~~~~lvGhS~Gg~ia~~~a~~~p~~~~~li~~~~ 128 (291)
T d1bn7a_ 75 DYFFDDHVRYLDAFIEA--LGLEEVVLVIHDWGSALGFHWAKRNPERVKGIACMEF 128 (291)
T ss_dssp CCCHHHHHHHHHHHHHH--TTCCSEEEEEEHHHHHHHHHHHHHCGGGEEEEEEEEE
T ss_pred ccchhHHHHHHhhhhhh--hccccccccccccccchhHHHHHhCCcceeeeeeecc
Confidence 34566777777666665 3446899999999999999999999999999987543
|
| >d1hkha_ c.69.1.12 (A:) Gamma-lactamase {Aureobacterium sp. [TaxId: 51671]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloperoxidase domain: Gamma-lactamase species: Aureobacterium sp. [TaxId: 51671]
Probab=99.48 E-value=2.9e-13 Score=134.72 Aligned_cols=104 Identities=15% Similarity=0.065 Sum_probs=71.9
Q ss_pred CCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCccHHHHHHHHHHHHHHcCCC
Q 004766 479 GSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYT 558 (732)
Q Consensus 479 ~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~ 558 (732)
|..|.||++||.++.+. .|......++. +||.|+++|.||.|.... .....+++++...+..+++. .
T Consensus 21 G~g~~illlHG~~~~~~--~~~~~~~~l~~-~~~~vi~~D~~G~G~S~~--------~~~~~~~~~~~~di~~~i~~--l 87 (279)
T d1hkha_ 21 GSGQPVVLIHGYPLDGH--SWERQTRELLA-QGYRVITYDRRGFGGSSK--------VNTGYDYDTFAADLHTVLET--L 87 (279)
T ss_dssp SSSEEEEEECCTTCCGG--GGHHHHHHHHH-TTEEEEEECCTTSTTSCC--------CSSCCSHHHHHHHHHHHHHH--H
T ss_pred ccCCeEEEECCCCCCHH--HHHHHHHHHHH-CCCEEEEEechhhCCccc--------cccccchhhhhhhhhhhhhh--c
Confidence 45688999999876543 45444445556 999999999999886422 12234566666555555544 2
Q ss_pred CCCcEEEEecChhHH-HHHHHHhhCCCeeeEEEEcCCc
Q 004766 559 QSRKLCIEGGSNGGL-LVGACINQRPDLFGCALAHVGV 595 (732)
Q Consensus 559 d~~~i~i~G~S~GG~-l~~~~~~~~p~~f~a~v~~~p~ 595 (732)
+.+++.++|||+||. ++..++..+|+++.++|+..+.
T Consensus 88 ~~~~~~lvGhS~Gg~~~a~~~a~~~p~~v~~lvli~~~ 125 (279)
T d1hkha_ 88 DLRDVVLVGFSMGTGELARYVARYGHERVAKLAFLASL 125 (279)
T ss_dssp TCCSEEEEEETHHHHHHHHHHHHHCSTTEEEEEEESCC
T ss_pred CcCccccccccccccchhhhhccccccccceeEEeecc
Confidence 446899999999965 5555666789999999876654
|
| >d1wm1a_ c.69.1.7 (A:) Proline aminopeptidase {Serratia marcescens [TaxId: 615]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Proline iminopeptidase-like domain: Proline aminopeptidase species: Serratia marcescens [TaxId: 615]
Probab=99.46 E-value=1.2e-12 Score=131.76 Aligned_cols=125 Identities=15% Similarity=0.129 Sum_probs=88.6
Q ss_pred EEEEEccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhc
Q 004766 453 QVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKG 532 (732)
Q Consensus 453 ~~~~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~ 532 (732)
.-++++.|| .+|.+...-++ ..|.||++||++++...+ ... ...|+ +||.|+++|.||.|.....
T Consensus 13 ~~~v~~~dG-~~i~y~~~G~~------~g~pvvllHG~~~~~~~w--~~~-~~~l~-~~~~vi~~D~rG~G~S~~~---- 77 (313)
T d1wm1a_ 13 SGWLDTGDG-HRIYWELSGNP------NGKPAVFIHGGPGGGISP--HHR-QLFDP-ERYKVLLFDQRGCGRSRPH---- 77 (313)
T ss_dssp EEEEECSSS-CEEEEEEEECT------TSEEEEEECCTTTCCCCG--GGG-GGSCT-TTEEEEEECCTTSTTCBST----
T ss_pred CCEEEeCCC-cEEEEEEecCC------CCCeEEEECCCCCcccch--HHH-HHHhh-cCCEEEEEeCCCccccccc----
Confidence 445677899 99988766432 246788899988875443 332 34466 8999999999998854321
Q ss_pred ccccCCccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCcc
Q 004766 533 GALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVM 596 (732)
Q Consensus 533 ~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~ 596 (732)
.......+.++.+.+..+.+. ....++.++|+|+||.++..++..+|+++++.++..+..
T Consensus 78 --~~~~~~~~~~~~~d~~~~~~~--~~~~~~~~vg~s~g~~~~~~~a~~~~~~v~~~v~~~~~~ 137 (313)
T d1wm1a_ 78 --ASLDNNTTWHLVADIERLREM--AGVEQWLVFGGSWGSTLALAYAQTHPERVSEMVLRGIFT 137 (313)
T ss_dssp --TCCTTCSHHHHHHHHHHHHHH--TTCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCC
T ss_pred --ccccccchhhHHHHHHhhhhc--cCCCcceeEeeecCCchhhHHHHHHhhhheeeeeccccc
Confidence 222233455555555555554 234689999999999999999999999999998776544
|
| >d1m33a_ c.69.1.26 (A:) Biotin biosynthesis protein BioH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Biotin biosynthesis protein BioH domain: Biotin biosynthesis protein BioH species: Escherichia coli [TaxId: 562]
Probab=99.46 E-value=1.3e-13 Score=135.69 Aligned_cols=95 Identities=14% Similarity=0.047 Sum_probs=68.4
Q ss_pred ccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCccHHHHHHHHHHHHHHcCCCCC
Q 004766 481 HPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQS 560 (732)
Q Consensus 481 ~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~ 560 (732)
.|.||++||..+... .|.. ....|. .||.|+++|.||.|... ......+.|+.+.+. ... .
T Consensus 11 ~~~lvllHG~~~~~~--~~~~-~~~~L~-~~~~vi~~D~~G~G~S~---------~~~~~~~~d~~~~~~---~~~---~ 71 (256)
T d1m33a_ 11 NVHLVLLHGWGLNAE--VWRC-IDEELS-SHFTLHLVDLPGFGRSR---------GFGALSLADMAEAVL---QQA---P 71 (256)
T ss_dssp SSEEEEECCTTCCGG--GGGG-THHHHH-TTSEEEEECCTTSTTCC---------SCCCCCHHHHHHHHH---TTS---C
T ss_pred CCeEEEECCCCCCHH--HHHH-HHHHHh-CCCEEEEEeCCCCCCcc---------ccccccccccccccc---ccc---c
Confidence 467888999876542 3443 346677 79999999999987542 122334555554433 222 3
Q ss_pred CcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCC
Q 004766 561 RKLCIEGGSNGGLLVGACINQRPDLFGCALAHVG 594 (732)
Q Consensus 561 ~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p 594 (732)
+++.++|+|+||.+++.++.++|+.++++++..+
T Consensus 72 ~~~~l~GhS~Gg~ia~~~a~~~p~~~~~l~~~~~ 105 (256)
T d1m33a_ 72 DKAIWLGWSLGGLVASQIALTHPERVRALVTVAS 105 (256)
T ss_dssp SSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESC
T ss_pred cceeeeecccchHHHHHHHHhCCcccceeeeeec
Confidence 6899999999999999999999999999877654
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.44 E-value=2.7e-11 Score=120.36 Aligned_cols=242 Identities=11% Similarity=0.007 Sum_probs=143.1
Q ss_pred eCCEEEEEEEcCCCCeeEEEEEeCCCCCceEEeCCCCcCCCCCEEEEeEEECCCCcEEEEEEeccCCc-eEEEEEEECCC
Q 004766 89 RGNKYFYFHNTGLQPQSVLYVQDSLDAKAKVLLDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSGSD-WATIKLMRIED 167 (732)
Q Consensus 89 ~g~~~~~~~~~~~~~~~~l~~r~~~~~~~~~l~D~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e-~~~i~v~dl~~ 167 (732)
.|++++|... ..||+.+..+++.+.|++... ....++|||||++|||+...++.. ..+|+++++.+
T Consensus 11 ~G~~v~f~~~------~dl~~~d~~~g~~~~Lt~~~~-------~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~ 77 (281)
T d1k32a2 11 HGDRIIFVCC------DDLWEHDLKSGSTRKIVSNLG-------VINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGEN 77 (281)
T ss_dssp ETTEEEEEET------TEEEEEETTTCCEEEEECSSS-------EEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTT
T ss_pred CCCEEEEEeC------CcEEEEECCCCCEEEEecCCC-------cccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecC
Confidence 4999988753 139999987788777765432 246899999999999998776654 35899999999
Q ss_pred Cceecccccce-------eeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCCcccEEEEEECCCCCCCCeEEEecCC
Q 004766 168 QIVEADALSWF-------KFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPE 240 (732)
Q Consensus 168 g~~~~~~~~~~-------~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~ 240 (732)
|+....+.... ....++|+|||+.|+|+..... ......++..+..+... .. ...
T Consensus 78 g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~-------------~~~~~~~~~~~~~~~~~----~~-~~~ 139 (281)
T d1k32a2 78 GEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQP-------------FSSMTCLYRVENDGINF----VP-LNL 139 (281)
T ss_dssp TEEEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSS-------------STTCCEEEEEEGGGTEE----EE-CCS
T ss_pred CceEEeeecCCCccCccccccccccCCCCCEEEEEEccCC-------------CccceeeeeecCCCcee----EE-ecC
Confidence 98654332211 1246789999999999864331 12233455556544321 11 111
Q ss_pred CCeeEEEeEEecCCcEEEEEEecCCc---------ceEEEEEEeCCCCCCCcccccccCCCCCcEEeeecccceEEEEEe
Q 004766 241 HPKYIFSGHVTEDGQYLVMCIEENCD---------PVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIAN 311 (732)
Q Consensus 241 ~~~~~~~~~~SpDg~~l~~~~~~~~~---------~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~ 311 (732)
.. ....++++|+.+++....... ....+....... ....+........ ...
T Consensus 140 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~-~~~ 199 (281)
T d1k32a2 140 GP---ATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGA----------------FKKIVDMSTHVSS-PVI 199 (281)
T ss_dssp CS---CSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTE----------------EEEEECCSSCCEE-EEE
T ss_pred Cc---cceeeecCCCeEEEeeccccceeeeeccCCcceeeeeccccc----------------eeeccCCccccce-eee
Confidence 11 134567788777665433221 011111111110 1222222222222 222
Q ss_pred cCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecC-CEEEEEEecCCeeEEEEEeCCCCceeeecc
Q 004766 312 DDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNL-NQMIVSYLSDVKYVLQIRDLKNGSLLHQLP 390 (732)
Q Consensus 312 dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~-~~l~~~~~~~g~~~l~~~d~~~g~~~~~l~ 390 (732)
.++.+++..+..+ ..+||++|+++.. .+.|+... ..... .+++| +.|++.. + .+||++|+++|+. ++|+
T Consensus 200 ~~~~~~~~~~~~~-~~~l~~~d~~g~~-~~~lt~~~-~~~~~--~~SpDG~~I~f~~--~--~~l~~~d~~~g~~-~~i~ 269 (281)
T d1k32a2 200 VGHRIYFITDIDG-FGQIYSTDLDGKD-LRKHTSFT-DYYPR--HLNTDGRRILFSK--G--GSIYIFNPDTEKI-EKIE 269 (281)
T ss_dssp ETTEEEEEECTTS-SCEEEEEETTSCS-CEECCCCC-SSCEE--EEEESSSCEEEEE--T--TEEEEECTTTCCE-EECC
T ss_pred eccccceeccccc-ccceEEEeCCCCc-eEEeecCC-Ccccc--cCcCCCCEEEEEe--C--CEEEEEECCCCCE-EEec
Confidence 3567777776644 5689999999876 56665543 23333 34544 5666643 3 3699999997776 6776
Q ss_pred c
Q 004766 391 I 391 (732)
Q Consensus 391 ~ 391 (732)
.
T Consensus 270 ~ 270 (281)
T d1k32a2 270 I 270 (281)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >d3c70a1 c.69.1.20 (A:2-257) Hydroxynitrile lyase {Rubber tree (Hevea brasiliensis) [TaxId: 3981]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Hydroxynitrile lyase-like domain: Hydroxynitrile lyase species: Rubber tree (Hevea brasiliensis) [TaxId: 3981]
Probab=99.43 E-value=1.6e-13 Score=134.03 Aligned_cols=102 Identities=16% Similarity=0.182 Sum_probs=73.7
Q ss_pred EEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCccHHHHHHHHHHHHHHcCCCCCCcE
Q 004766 484 LLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSRKL 563 (732)
Q Consensus 484 vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i 563 (732)
+|++||..+++ ..|.. +...|.++||.|+++|.||.|..... .....+++++.+.+..++.+- ...+++
T Consensus 5 ~vliHG~~~~~--~~w~~-~~~~L~~~g~~Via~Dl~G~G~S~~~-------~~~~~~~~~~~~~l~~~~~~~-~~~~~~ 73 (256)
T d3c70a1 5 FVLIHTICHGA--WIWHK-LKPLLEALGHKVTALDLAASGVDPRQ-------IEEIGSFDEYSEPLLTFLEAL-PPGEKV 73 (256)
T ss_dssp EEEECCTTCCG--GGGTT-HHHHHHHTTCEEEEECCTTSTTCSCC-------GGGCCSHHHHTHHHHHHHHHS-CTTCCE
T ss_pred EEEeCCCCCCH--HHHHH-HHHHHHhCCCEEEEEcCCCCCCCCCC-------CCCCCCHHHHHHHhhhhhhhh-ccccce
Confidence 47899987654 34544 34566669999999999998865321 112235667777666554442 234689
Q ss_pred EEEecChhHHHHHHHHhhCCCeeeEEEEcCCcc
Q 004766 564 CIEGGSNGGLLVGACINQRPDLFGCALAHVGVM 596 (732)
Q Consensus 564 ~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~ 596 (732)
.++|+|+||++++.++.++|++++++|...+..
T Consensus 74 ~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 106 (256)
T d3c70a1 74 ILVGESCGGLNIAIAADKYCEKIAAAVFHNSVL 106 (256)
T ss_dssp EEEEETTHHHHHHHHHHHHGGGEEEEEEESCCC
T ss_pred eecccchHHHHHHHHhhcCchhhhhhheecccc
Confidence 999999999999999999999999998776543
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.40 E-value=1e-09 Score=109.28 Aligned_cols=242 Identities=12% Similarity=0.070 Sum_probs=150.9
Q ss_pred EeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccC
Q 004766 135 IKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDS 214 (732)
Q Consensus 135 ~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~ 214 (732)
.++++||||++|+.+...+ ..|++||+++++.+...........++|++|++.++....
T Consensus 35 ~~va~spdG~~l~v~~~~~----~~i~v~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------- 93 (301)
T d1l0qa2 35 MGAVISPDGTKVYVANAHS----NDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNM----------------- 93 (301)
T ss_dssp EEEEECTTSSEEEEEEGGG----TEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEET-----------------
T ss_pred eEEEEeCCCCEEEEEECCC----CEEEEEECCCCceeeeeecccccccccccccccccccccc-----------------
Confidence 4788999999997654332 3799999999986543222223467899999998887643
Q ss_pred CcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCCCC
Q 004766 215 NLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLP 294 (732)
Q Consensus 215 ~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~ 294 (732)
....+.+++..++.. ....... .......++|||+++++..... ..+.+++..+.. .
T Consensus 94 -~~~~~~~~~~~~~~~--~~~~~~~---~~~~~~~~~~dg~~~~~~~~~~----~~~~~~~~~~~~-------------~ 150 (301)
T d1l0qa2 94 -ASSTLSVIDTTSNTV--AGTVKTG---KSPLGLALSPDGKKLYVTNNGD----KTVSVINTVTKA-------------V 150 (301)
T ss_dssp -TTTEEEEEETTTTEE--EEEEECS---SSEEEEEECTTSSEEEEEETTT----TEEEEEETTTTE-------------E
T ss_pred -ccceeeeccccccee--eeecccc---ccceEEEeecCCCeeeeeeccc----cceeeeeccccc-------------e
Confidence 234577777765431 1222222 2335688999999998776432 346677776531 1
Q ss_pred cEEeeecccceEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecC-CEEEEEEecCCee
Q 004766 295 FVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNL-NQMIVSYLSDVKY 373 (732)
Q Consensus 295 ~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~-~~l~~~~~~~g~~ 373 (732)
...+..........++++++.+++..... ..+...+..... ........ ....++.+..+ +.+++........
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~g~~~~v~~~~~~~~ 224 (301)
T d1l0qa2 151 INTVSVGRSPKGIAVTPDGTKVYVANFDS---MSISVIDTVTNS-VIDTVKVE--AAPSGIAVNPEGTKAYVTNVDKYFN 224 (301)
T ss_dssp EEEEECCSSEEEEEECTTSSEEEEEETTT---TEEEEEETTTTE-EEEEEECS--SEEEEEEECTTSSEEEEEEECSSCC
T ss_pred eeecccCCCceEEEeeccccceeeecccc---ccccccccccee-eeeccccc--CCcceeeccccccccccccccceee
Confidence 12222221122335788888887655432 345555555443 22222222 33456677764 5566665555556
Q ss_pred EEEEEeCCCCceeeecccccceeeEeecccCCcEEEEEEecCCCCceEEEEECCCCC
Q 004766 374 VLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 430 (732)
Q Consensus 374 ~l~~~d~~~g~~~~~l~~~~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~~ 430 (732)
.|++||+.+++.+..+... ..+..++++|||++++++.+. -.++..+|+++++
T Consensus 225 ~v~v~D~~t~~~~~~~~~~-~~~~~va~spdg~~l~va~~~---~~~i~v~D~~t~~ 277 (301)
T d1l0qa2 225 TVSMIDTGTNKITARIPVG-PDPAGIAVTPDGKKVYVALSF---CNTVSVIDTATNT 277 (301)
T ss_dssp EEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETT---TTEEEEEETTTTE
T ss_pred eeeeeecCCCeEEEEEcCC-CCEEEEEEeCCCCEEEEEECC---CCeEEEEECCCCe
Confidence 8999999888876666543 345678899999988766432 3579999999885
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.38 E-value=1.4e-10 Score=117.30 Aligned_cols=241 Identities=6% Similarity=-0.130 Sum_probs=152.5
Q ss_pred eEEECCCCcEEEEEEeccCCceEEEEEEECCCCceeccc-ccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccC
Q 004766 136 KVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADA-LSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDS 214 (732)
Q Consensus 136 ~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~-~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~ 214 (732)
.+++||+|++|||.. |+ .++++|+++++..... ........++|||||+.|+....+
T Consensus 22 ~~a~~~~g~~l~~~~---~~---~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~d---------------- 79 (311)
T d1nr0a1 22 VLGNTPAGDKIQYCN---GT---SVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVH---------------- 79 (311)
T ss_dssp CCEECTTSSEEEEEE---TT---EEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETT----------------
T ss_pred EEEEcCCCCEEEEEe---CC---EEEEEECCCCceeEEEcCCCCCEEEEEEeCCCCeEeccccC----------------
Confidence 467899999999974 33 5889999987643321 111235789999999998876533
Q ss_pred CcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCCCC
Q 004766 215 NLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLP 294 (732)
Q Consensus 215 ~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~ 294 (732)
..|.+|++.++.......+... ...+..++|+|||++|+..+.... ..+.+++++++..
T Consensus 80 ---g~i~iwd~~~~~~~~~~~~~~~--~~~v~~v~~s~d~~~l~~~~~~~~---~~~~v~~~~~~~~------------- 138 (311)
T d1nr0a1 80 ---GNVRIWDTTQTTHILKTTIPVF--SGPVKDISWDSESKRIAAVGEGRE---RFGHVFLFDTGTS------------- 138 (311)
T ss_dssp ---SEEEEEESSSTTCCEEEEEECS--SSCEEEEEECTTSCEEEEEECCSS---CSEEEEETTTCCB-------------
T ss_pred ---ceEeeeeeeccccccccccccc--cCcccccccccccccccccccccc---ccccccccccccc-------------
Confidence 3689999877653322233322 234568999999999987764332 2245556665321
Q ss_pred cEEeeecccceE-EEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecCCEEEEEEecCCee
Q 004766 295 FVKLIDGFDAQY-EVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKY 373 (732)
Q Consensus 295 ~~~l~~~~~~~~-~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~~l~~~~~~~g~~ 373 (732)
...+........ ..|+|+++.+++.... .+.|..+|+.+......+..+ ...+..+.+++++.+++....++
T Consensus 139 ~~~l~~h~~~v~~v~~~~~~~~~l~sgs~---d~~i~i~d~~~~~~~~~~~~~--~~~i~~v~~~p~~~~l~~~~~d~-- 211 (311)
T d1nr0a1 139 NGNLTGQARAMNSVDFKPSRPFRIISGSD---DNTVAIFEGPPFKFKSTFGEH--TKFVHSVRYNPDGSLFASTGGDG-- 211 (311)
T ss_dssp CBCCCCCSSCEEEEEECSSSSCEEEEEET---TSCEEEEETTTBEEEEEECCC--SSCEEEEEECTTSSEEEEEETTS--
T ss_pred cccccccccccccccccccceeeeccccc---ccccccccccccccccccccc--cccccccccCccccccccccccc--
Confidence 112222222112 2488988875554433 245888898876522333233 35688899988767777777664
Q ss_pred EEEEEeCCCCceeeeccc-------ccceeeEeecccCCcEEEEEEecCCCCceEEEEECCCCC
Q 004766 374 VLQIRDLKNGSLLHQLPI-------EIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 430 (732)
Q Consensus 374 ~l~~~d~~~g~~~~~l~~-------~~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~~ 430 (732)
.+.+|++.+++....+.. +.+.|..+.++++++.++ +.+. -..++.||+.+++
T Consensus 212 ~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~-tgs~---Dg~v~iwd~~t~~ 271 (311)
T d1nr0a1 212 TIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIA-SASA---DKTIKIWNVATLK 271 (311)
T ss_dssp CEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEE-EEET---TSEEEEEETTTTE
T ss_pred cccccccccccccccccccccccccccccccccccCCCCCEEE-EEeC---CCeEEEEECCCCc
Confidence 688899887765444432 135677888999998655 3332 2479999998874
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.35 E-value=2.5e-11 Score=124.78 Aligned_cols=183 Identities=12% Similarity=0.039 Sum_probs=120.7
Q ss_pred EEECC-CCcEEEEEEeccCCceEEEEEEECCCCceecccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCC
Q 004766 137 VSVSE-DAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSN 215 (732)
Q Consensus 137 ~~~SP-DG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~ 215 (732)
..||| ||+++|++.. | +|+++|+++|..++... ......++|||||+.|+++..+.
T Consensus 8 ~~fSP~dG~~~a~~~~--g----~v~v~d~~~~~~~~~~~-~~~v~~~~~spDg~~l~~~~~~~---------------- 64 (360)
T d1k32a3 8 EDFSPLDGDLIAFVSR--G----QAFIQDVSGTYVLKVPE-PLRIRYVRRGGDTKVAFIHGTRE---------------- 64 (360)
T ss_dssp EEEEECGGGCEEEEET--T----EEEEECTTSSBEEECSC-CSCEEEEEECSSSEEEEEEEETT----------------
T ss_pred ccccCCCCCEEEEEEC--C----eEEEEECCCCcEEEccC-CCCEEEEEECCCCCEEEEEEcCC----------------
Confidence 56999 9999999852 2 79999999998765432 33458899999999999986532
Q ss_pred cccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCCCCc
Q 004766 216 LYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPF 295 (732)
Q Consensus 216 ~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~ 295 (732)
...|++|++.++... .+ ..+......++|||||++|++...+ ..+++++++++. .
T Consensus 65 -g~~v~v~d~~~~~~~--~~---~~~~~~v~~~~~spdg~~l~~~~~~-----~~~~~~~~~~~~--------------~ 119 (360)
T d1k32a3 65 -GDFLGIYDYRTGKAE--KF---EENLGNVFAMGVDRNGKFAVVANDR-----FEIMTVDLETGK--------------P 119 (360)
T ss_dssp -EEEEEEEETTTCCEE--EC---CCCCCSEEEEEECTTSSEEEEEETT-----SEEEEEETTTCC--------------E
T ss_pred -CCEEEEEECCCCcEE--Ee---eCCCceEEeeeecccccccceeccc-----cccccccccccc--------------e
Confidence 235899998876432 11 1233445689999999999887643 348888887743 1
Q ss_pred EEeeeccc--ceEEEEEecCCeEEEEeCCC------CCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecCCEEEEEE
Q 004766 296 VKLIDGFD--AQYEVIANDDTVFTFLTNKD------APKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSY 367 (732)
Q Consensus 296 ~~l~~~~~--~~~~~~s~dg~~l~~~s~~~------~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~~l~~~~ 367 (732)
..+..... .....|+|||+.|++..... .....+..+++.++. ...+..+. .....+.+++++..++..
T Consensus 120 ~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~-~~~~~~~~--~~~~~~~~spdg~~l~~~ 196 (360)
T d1k32a3 120 TVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTEN--SHDYAPAFDADSKNLYYL 196 (360)
T ss_dssp EEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSS--SBEEEEEECTTSCEEEEE
T ss_pred eeeeecccccccchhhccceeeeeeeccccccceeeccccceeeeccccCc-eeeecccc--cccccccccCCCCEEEEE
Confidence 22222211 12246999999998866432 234568888988765 33344333 455667888765544444
Q ss_pred ecC
Q 004766 368 LSD 370 (732)
Q Consensus 368 ~~~ 370 (732)
..+
T Consensus 197 s~~ 199 (360)
T d1k32a3 197 SYR 199 (360)
T ss_dssp ESC
T ss_pred eCC
Confidence 444
|
| >d2d81a1 c.69.1.37 (A:21-338) Polyhydroxybutyrate depolymerase {Penicillium funiculosum [TaxId: 28572]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PHB depolymerase-like domain: Polyhydroxybutyrate depolymerase species: Penicillium funiculosum [TaxId: 28572]
Probab=99.35 E-value=5.1e-13 Score=133.69 Aligned_cols=125 Identities=12% Similarity=0.048 Sum_probs=85.4
Q ss_pred CCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEc---CCcccccccccCCCCCcccccc-CCC--CCHHHHHHHHhcCc
Q 004766 558 TQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAH---VGVMDMLRYHKFTIGHAWVSDF-GCS--EEEEEFYWLIKYSP 631 (732)
Q Consensus 558 ~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~---~p~~d~~~~~~~~~~~~~~~~~-g~p--~~~~~~~~~~~~sp 631 (732)
+||+||+|+|+|+||+|+..++..+|++|+++++. .|+.-..... . ....+ +.+ ..+.........+.
T Consensus 8 iDp~rI~V~G~SsGG~mA~~la~a~sd~f~aga~vvAg~p~~ca~~~~---~---~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (318)
T d2d81a1 8 VNPNSVSVSGLASGGYMAAQLGVAYSDVFNVGFGVFAGGPYDCARNQY---Y---TSCMYNGYPSITTPTANMKSWSGNQ 81 (318)
T ss_dssp EEEEEEEEEEETHHHHHHHHHHHHTTTTSCSEEEEESCCCTTTTSSSC---G---GGGSTTCCCCCHHHHHHHHHHBTTT
T ss_pred CCccceEEEEECHHHHHHHHHHHhcccceeeeEEEeccCchhhhcccc---h---HHHhhcCCCCCcChhHHHHHHhhcC
Confidence 79999999999999999999999999999754332 2221111000 0 00011 111 12233333344444
Q ss_pred ccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeCCCCCCCC
Q 004766 632 LHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVG 705 (732)
Q Consensus 632 ~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~ 705 (732)
+..+.+ ...+|+||+||.+|.+||+.++.+++++|++. ..+.++.++.++++||++.
T Consensus 82 i~~~~~---------~~~~pvll~hG~~D~~Vpp~~s~~l~~~l~~~--------~~~~~v~yv~~~gagH~fp 138 (318)
T d2d81a1 82 IASVAN---------LGQRKIYMWTGSSDTTVGPNVMNQLKAQLGNF--------DNSANVSYVTTTGAVHTFP 138 (318)
T ss_dssp BCCGGG---------GGGCEEEEEEETTCCSSCHHHHHHHHHHHTTT--------SCGGGEEEEEETTCCSSEE
T ss_pred Ccchhc---------cCCCCEEEEecCCCCCcCHHHHHHHHHHHHcC--------cCCCceEEEEeCCCCCCCC
Confidence 444444 26789999999999999999999999999875 1245789999999999973
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.32 E-value=7.6e-10 Score=114.52 Aligned_cols=130 Identities=8% Similarity=-0.064 Sum_probs=80.4
Q ss_pred EEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCccc
Q 004766 134 LIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETD 213 (732)
Q Consensus 134 ~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~ 213 (732)
.....+||||+++++......+...++|++|.++|+.+.....+ ...+++|||||++|++....... ...
T Consensus 23 ~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~-~~~~~a~SpDG~~l~va~~~~~~---------~~~ 92 (373)
T d2madh_ 23 TNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGG-FLPNPVAAHSGSEFALASTSFSR---------IAK 92 (373)
T ss_pred ccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCC-CCccEEEcCCCCEEEEEeecCCc---------ccc
Confidence 34677999999998775444344468999999999976532222 23579999999999998654311 001
Q ss_pred CCcccEEEEEECCCCCCCCeEEEecCCCCee-----EEEeEEecCCcEEEEEEecCCcceEEEEEEeCCC
Q 004766 214 SNLYHEFYYHFLGTKQSEDILCWKDPEHPKY-----IFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSA 278 (732)
Q Consensus 214 ~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~-----~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~ 278 (732)
......|.+|+..+++... ....+..... ...+.+|+||+++++...... ..+.+++..+
T Consensus 93 ~~~~~~v~v~D~~t~~~~~--~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~---~~~~~~~~~~ 157 (373)
T d2madh_ 93 GKRTDYVEVFDPVTFLPIA--DIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAG---PAVGLVVQGG 157 (373)
T ss_pred cccceEEEEEECCCCcEEE--EEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCC---CceEEeeccC
Confidence 1234568889888764321 1111111111 125689999999987765433 3455556554
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.31 E-value=1.3e-09 Score=110.03 Aligned_cols=211 Identities=10% Similarity=0.026 Sum_probs=129.6
Q ss_pred EEEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceec-ccc--cceeeeeEEEEeCCcEEEEEEecCCCCCCCCCC
Q 004766 132 AALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEA-DAL--SWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDA 208 (732)
Q Consensus 132 ~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~-~~~--~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~ 208 (732)
..+..++|||||++||-.. ...+|+|||+.++.... ... .......++|+|||+.|+....+.
T Consensus 59 ~~v~~~~~sp~g~~latg~-----~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~--------- 124 (311)
T d1nr0a1 59 HQTTVAKTSPSGYYCASGD-----VHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGR--------- 124 (311)
T ss_dssp SCEEEEEECTTSSEEEEEE-----TTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCS---------
T ss_pred CCEEEEEEeCCCCeEeccc-----cCceEeeeeeeccccccccccccccCccccccccccccccccccccc---------
Confidence 3477899999999998553 22479999999876321 111 112347899999999888775322
Q ss_pred CCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccc
Q 004766 209 GTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKK 288 (732)
Q Consensus 209 ~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~ 288 (732)
...+.++++.++..... + ..+...+..+.|+|+|+++++..... ..|.++|+.++.
T Consensus 125 --------~~~~~v~~~~~~~~~~~--l--~~h~~~v~~v~~~~~~~~~l~sgs~d----~~i~i~d~~~~~-------- 180 (311)
T d1nr0a1 125 --------ERFGHVFLFDTGTSNGN--L--TGQARAMNSVDFKPSRPFRIISGSDD----NTVAIFEGPPFK-------- 180 (311)
T ss_dssp --------SCSEEEEETTTCCBCBC--C--CCCSSCEEEEEECSSSSCEEEEEETT----SCEEEEETTTBE--------
T ss_pred --------ccccccccccccccccc--c--cccccccccccccccceeeecccccc----cccccccccccc--------
Confidence 22355666665543221 1 11223456889999999876655432 237788887632
Q ss_pred cCCCCCcEEeeecccce--EEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCC-----CCCceeEEEEecCC
Q 004766 289 RDGLLPFVKLIDGFDAQ--YEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEA-----ERDVLESATAVNLN 361 (732)
Q Consensus 289 ~~~~~~~~~l~~~~~~~--~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~-----~~~~l~~~~~~~~~ 361 (732)
........... ...|+|+++.|+..+.+ ..+..+|+.++.....+-... ....+..+.+++++
T Consensus 181 ------~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d----~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~ 250 (311)
T d1nr0a1 181 ------FKSTFGEHTKFVHSVRYNPDGSLFASTGGD----GTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDG 250 (311)
T ss_dssp ------EEEEECCCSSCEEEEEECTTSSEEEEEETT----SCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTS
T ss_pred ------cccccccccccccccccCcccccccccccc----ccccccccccccccccccccccccccccccccccccCCCC
Confidence 11111111111 22488999877765543 357788887665222211110 12457788998876
Q ss_pred EEEEEEecCCeeEEEEEeCCCCceeeecccc
Q 004766 362 QMIVSYLSDVKYVLQIRDLKNGSLLHQLPIE 392 (732)
Q Consensus 362 ~l~~~~~~~g~~~l~~~d~~~g~~~~~l~~~ 392 (732)
.++++...|+ .|++||+.+++.++.+...
T Consensus 251 ~~l~tgs~Dg--~v~iwd~~t~~~~~~l~~~ 279 (311)
T d1nr0a1 251 TKIASASADK--TIKIWNVATLKVEKTIPVG 279 (311)
T ss_dssp SEEEEEETTS--EEEEEETTTTEEEEEEECC
T ss_pred CEEEEEeCCC--eEEEEECCCCcEEEEEECC
Confidence 7777777775 6999999989877767543
|
| >d1qlwa_ c.69.1.15 (A:) A novel bacterial esterase {Alcaligenes sp. [TaxId: 512]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: A novel bacterial esterase domain: A novel bacterial esterase species: Alcaligenes sp. [TaxId: 512]
Probab=99.30 E-value=2.8e-13 Score=137.86 Aligned_cols=227 Identities=9% Similarity=-0.040 Sum_probs=121.4
Q ss_pred EEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcCh----hHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCcc
Q 004766 465 IPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSV----SRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQN 540 (732)
Q Consensus 465 i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~----~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~ 540 (732)
+.+..+.|.+ .++.| ||++||++++...+...+ .+..++.++||.|+++|+||.|.++........
T Consensus 46 ~~v~~~~p~~---~~~~P-vvllHG~~~~~~~w~~~~~~~~~~~~~~~~~Gy~V~~~D~~G~G~S~~~~~~~~~------ 115 (318)
T d1qlwa_ 46 MYVRYQIPQR---AKRYP-ITLIHGCCLTGMTWETTPDGRMGWDEYFLRKGYSTYVIDQSGRGRSATDISAINA------ 115 (318)
T ss_dssp EEEEEEEETT---CCSSC-EEEECCTTCCGGGGSSCTTSCCCHHHHHHHTTCCEEEEECTTSTTSCCCCHHHHH------
T ss_pred EEEEEECCCC---CCCCc-EEEECCCCCCcCccccCcccchhHHHHHHhCCCEEEEecCCCCCCCCCccccCCH------
Confidence 4444456654 24566 566899988765443321 244555559999999999999987654322111
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCe-eeEEEEcCCcccccccccCC-------------C
Q 004766 541 CFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDL-FGCALAHVGVMDMLRYHKFT-------------I 606 (732)
Q Consensus 541 ~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~-f~a~v~~~p~~d~~~~~~~~-------------~ 606 (732)
.+....+..+++.-.....++++.|+|+||.++..++..++.. ....++..++.......... .
T Consensus 116 --~~~~~~~~~~l~~~~~~~~~~~~~g~s~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (318)
T d1qlwa_ 116 --VKLGKAPASSLPDLFAAGHEAAWAIFRFGPRYPDAFKDTQFPVQAQAELWQQMVPDWLGSMPTPNPTVANLSKLAIKL 193 (318)
T ss_dssp --HHTTSSCGGGSCCCBCCCHHHHHHHTTSSSBTTBCCTTCCSCGGGHHHHHHHCCCBCGGGSCSSCHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHhhcccccccccccchhHHHHHHhhhcCccccceeeEeccccccccchhhhhhhHHHHHHHHhhh
Confidence 1111111111111122345677889999998877666543221 11111111111111000000 0
Q ss_pred CCccccccCCCCCHHHHHHH-Hh---------------cCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCch----
Q 004766 607 GHAWVSDFGCSEEEEEFYWL-IK---------------YSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPL---- 666 (732)
Q Consensus 607 ~~~~~~~~g~p~~~~~~~~~-~~---------------~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~---- 666 (732)
.......+.. .....+..- .. .+|..... .+..|+|++||++|.+||++
T Consensus 194 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~P~Lii~G~~D~~~p~~~~~~ 262 (318)
T d1qlwa_ 194 DGTVLLSHSQ-SGIYPFQTAAMNPKGITAIVSVEPGECPKPEDVKP----------LTSIPVLVVFGDHIEEFPRWAPRL 262 (318)
T ss_dssp TSEEEEEEGG-GTTHHHHHHHHCCTTEEEEEEESCSCCCCGGGCGG----------GTTSCEEEEECSSCTTCTTTHHHH
T ss_pred ccccchhhhc-ccchhhhhhhhhhhHHHHHHhhhcccccchhhhhh----------hccCCEEEEecCcCcccChhhhHH
Confidence 0000000000 000000000 00 01222222 26789999999999999964
Q ss_pred -HHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeCC-----CCCCCCCchHHHHHHHHHHHHHHHHH
Q 004766 667 -HSLKLLATMQYVLCTSLENSPQTNPIIGRIERK-----AGHGVGLPTQKMIDEAADRYGFMAKM 725 (732)
Q Consensus 667 -~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----~gH~~~~~~~~~~~~~~~~~~fl~~~ 725 (732)
++..+++.|+++ |.++++..+|+ +||....+.+. .+..+.+.+||.++
T Consensus 263 ~~~~~~~~~l~~~----------g~~~~~~~lp~~gi~G~gH~~~~e~~~-~~va~~i~~wL~~~ 316 (318)
T d1qlwa_ 263 KACHAFIDALNAA----------GGKGQLMSLPALGVHGNSHMMMQDRNN-LQVADLILDWIGRN 316 (318)
T ss_dssp HHHHHHHHHHHHT----------TCCEEEEEGGGGTCCCCCTTGGGSTTH-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh----------CCCcEEEEecccccCCCcCccccCcCH-HHHHHHHHHHHHhc
Confidence 455678888887 88999999774 56987554432 46677899999886
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.29 E-value=1.2e-09 Score=111.48 Aligned_cols=239 Identities=10% Similarity=0.006 Sum_probs=149.5
Q ss_pred EEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceec------ccccceeeeeEEEEeCCcEEEEEEecCCCCCCCC
Q 004766 133 ALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEA------DALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDM 206 (732)
Q Consensus 133 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~------~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~ 206 (732)
.+..++|||||++||-. ++ ..|+|||+.++.... ..........++|+|||+.|+....+
T Consensus 53 ~V~~v~fs~~g~~latg-----~d-g~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~d-------- 118 (337)
T d1gxra_ 53 VVCAVTISNPTRHVYTG-----GK-GCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEA-------- 118 (337)
T ss_dssp CCCEEEECSSSSEEEEE-----CB-SEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESS--------
T ss_pred cEEEEEECCCCCEEEEE-----EC-CEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeecc--------
Confidence 45688999999999854 22 369999998765221 01111124789999999998876533
Q ss_pred CCCCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccc
Q 004766 207 DAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGF 286 (732)
Q Consensus 207 ~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~ 286 (732)
..|.+|++...... .......+........++||+..++....+. .+.++++.++.
T Consensus 119 -----------g~i~iwd~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~-----~i~~~~~~~~~------ 174 (337)
T d1gxra_ 119 -----------STLSIWDLAAPTPR--IKAELTSSAPACYALAISPDSKVCFSCCSDG-----NIAVWDLHNQT------ 174 (337)
T ss_dssp -----------SEEEEEECCCC--E--EEEEEECSSSCEEEEEECTTSSEEEEEETTS-----CEEEEETTTTE------
T ss_pred -----------cccccccccccccc--ccccccccccccccccccccccccccccccc-----ccccccccccc------
Confidence 36888988754332 2222222223455788999999987665332 37788887632
Q ss_pred cccCCCCCcEEeeecccceE-EEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecCCEEEE
Q 004766 287 KKRDGLLPFVKLIDGFDAQY-EVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIV 365 (732)
Q Consensus 287 ~~~~~~~~~~~l~~~~~~~~-~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~~l~~ 365 (732)
............. ..|++++..+++.+. ...+..+|+.++.... .... ...+..+.+.+++.+++
T Consensus 175 -------~~~~~~~~~~~v~~l~~s~~~~~~~~~~~----d~~v~i~d~~~~~~~~-~~~~--~~~i~~l~~~~~~~~l~ 240 (337)
T d1gxra_ 175 -------LVRQFQGHTDGASCIDISNDGTKLWTGGL----DNTVRSWDLREGRQLQ-QHDF--TSQIFSLGYCPTGEWLA 240 (337)
T ss_dssp -------EEEEECCCSSCEEEEEECTTSSEEEEEET----TSEEEEEETTTTEEEE-EEEC--SSCEEEEEECTTSSEEE
T ss_pred -------ccccccccccccccccccccccccccccc----cccccccccccceeec-cccc--ccceEEEEEcccccccc
Confidence 1111111111111 247888888776543 3468888988775222 2222 24577888887666666
Q ss_pred EEecCCeeEEEEEeCCCCceeeecccccceeeEeecccCCcEEEEEEecCCCCceEEEEECCCCC
Q 004766 366 SYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 430 (732)
Q Consensus 366 ~~~~~g~~~l~~~d~~~g~~~~~l~~~~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~~ 430 (732)
....++ .+.+||+.+++. .....+...+..+.++++++.++ +.+. -..++.||..+++
T Consensus 241 ~~~~d~--~i~i~d~~~~~~-~~~~~~~~~i~~v~~s~~g~~l~-s~s~---Dg~i~iwd~~~~~ 298 (337)
T d1gxra_ 241 VGMESS--NVEVLHVNKPDK-YQLHLHESCVLSLKFAYCGKWFV-STGK---DNLLNAWRTPYGA 298 (337)
T ss_dssp EEETTS--CEEEEETTSSCE-EEECCCSSCEEEEEECTTSSEEE-EEET---TSEEEEEETTTCC
T ss_pred eecccc--cccccccccccc-ccccccccccceEEECCCCCEEE-EEeC---CCeEEEEECCCCC
Confidence 766664 688899886665 33333466778888999998654 3332 2578999988875
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.26 E-value=5.4e-10 Score=114.64 Aligned_cols=269 Identities=10% Similarity=0.016 Sum_probs=143.4
Q ss_pred EECCCCcEEEEEEeccCCceEEEEEEECCCCceecccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCCcc
Q 004766 138 SVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLY 217 (732)
Q Consensus 138 ~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~~~ 217 (732)
.+||||+++++.....+....+++|+|+++|+.+.....+ ...+++|||||+.|+++...... .....+.
T Consensus 8 a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g-~~~~~a~SpDg~~l~v~~~~~~~---------~~~g~~d 77 (355)
T d2bbkh_ 8 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGG-FLPNPVVADDGSFIAHASTVFSR---------IARGERT 77 (355)
T ss_dssp CCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEEC-SSCEEEECTTSSCEEEEEEEEEE---------TTEEEEE
T ss_pred eeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECC-CCCceEEcCCCCEEEEEeCCCcc---------ccccCCC
Confidence 4799999996554344444578999999999876432222 23578999999999887532210 0001233
Q ss_pred cEEEEEECCCCCCCCeEEEecCCCCee-----EEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCC
Q 004766 218 HEFYYHFLGTKQSEDILCWKDPEHPKY-----IFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGL 292 (732)
Q Consensus 218 ~~v~~~~lgt~~~~~~~v~~~~~~~~~-----~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~ 292 (732)
..|++|++.++.....+.. +..... ...+.|||||+++++..... ...+++++..+++.. ..+.. .
T Consensus 78 ~~v~v~D~~t~~~~~~~~~--~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~---~~~~~~~~~~~~~~~-~~~~~---~ 148 (355)
T d2bbkh_ 78 DYVEVFDPVTLLPTADIEL--PDAPRFLVGTYPWMTSLTPDGKTLLFYQFSP---APAVGVVDLEGKAFK-RMLDV---P 148 (355)
T ss_dssp EEEEEECTTTCCEEEEEEE--TTCCCCCBSCCGGGEEECTTSSEEEEEECSS---SCEEEEEETTTTEEE-EEEEC---C
T ss_pred CEEEEEECCCCCEEEEEec--CCcceeecCCCCceEEEecCCCeeEEecCCC---CceeeeeecCCCcEe-eEEec---C
Confidence 4688899887653322111 111100 12468999999998765332 244666777653210 00000 0
Q ss_pred CCcEEeeecccceEEEEEecCCeEEEEeCCC----------------------------------CCCceEEEEeCCCCC
Q 004766 293 LPFVKLIDGFDAQYEVIANDDTVFTFLTNKD----------------------------------APKYKIIRVDLKEPN 338 (732)
Q Consensus 293 ~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~----------------------------------~~~~~l~~~d~~~~~ 338 (732)
. ..............+++||+.+++..... ....+++.+++.++.
T Consensus 149 ~-~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 227 (355)
T d2bbkh_ 149 D-CYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGD 227 (355)
T ss_dssp S-EEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSS
T ss_pred C-cceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCCCeEEEecCCCeEEEEecCCCc
Confidence 0 00000000011112444444444322110 012356666665543
Q ss_pred CceEeccCCCC-----------CceeEEEEecC-CEEEEEEecC-------CeeEEEEEeCCCCceeeecccccceeeEe
Q 004766 339 DWFEVIPEAER-----------DVLESATAVNL-NQMIVSYLSD-------VKYVLQIRDLKNGSLLHQLPIEIGSVNAI 399 (732)
Q Consensus 339 ~~~~l~~~~~~-----------~~l~~~~~~~~-~~l~~~~~~~-------g~~~l~~~d~~~g~~~~~l~~~~g~v~~~ 399 (732)
...+-..... .....+.++++ ..+++..... +...|++||+.+++.+..+..+ ..+..+
T Consensus 228 -~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~~-~~~~~~ 305 (355)
T d2bbkh_ 228 -AKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG-HEIDSI 305 (355)
T ss_dssp -CEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEE
T ss_pred -EEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecCC-CCEEEE
Confidence 1111000000 00123556654 4455554433 2368999999988876666543 345678
Q ss_pred ecccCCcEEEEEEecCCCCceEEEEECCCCC
Q 004766 400 SARREDSVVFISFTSFLIPGIVYQCNLKTET 430 (732)
Q Consensus 400 ~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~~ 430 (732)
.++|||+.+++...+. ...++.||+.+++
T Consensus 306 a~spDG~~~l~v~~~~--d~~i~v~D~~tg~ 334 (355)
T d2bbkh_ 306 NVSQDEKPLLYALSTG--DKTLYIHDAESGE 334 (355)
T ss_dssp EECCSSSCEEEEEETT--TTEEEEEETTTCC
T ss_pred EEcCCCCeEEEEEECC--CCEEEEEECCCCC
Confidence 8899998766554443 3689999999986
|
| >d1r3da_ c.69.1.35 (A:) Hypothetical protein VC1974 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Hypothetical protein VC1974 domain: Hypothetical protein VC1974 species: Vibrio cholerae [TaxId: 666]
Probab=99.25 E-value=4.4e-11 Score=116.48 Aligned_cols=103 Identities=15% Similarity=0.085 Sum_probs=68.2
Q ss_pred CCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCccHHHHHHHHHHHHHHcCC
Q 004766 478 DGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGY 557 (732)
Q Consensus 478 ~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~ 557 (732)
++..|+||++||..+... .|.. +...|.+.||.|+++|.||.|....... ....+...+...+.....
T Consensus 13 ~~~~P~ivllHG~~~~~~--~~~~-~~~~L~~~g~~vi~~Dl~G~G~s~~~~~---------~~~~~~~~~~~~~~~~~~ 80 (264)
T d1r3da_ 13 TARTPLVVLVHGLLGSGA--DWQP-VLSHLARTQCAALTLDLPGHGTNPERHC---------DNFAEAVEMIEQTVQAHV 80 (264)
T ss_dssp BTTBCEEEEECCTTCCGG--GGHH-HHHHHTTSSCEEEEECCTTCSSCC----------------CHHHHHHHHHHHTTC
T ss_pred CCCCCeEEEeCCCCCCHH--HHHH-HHHHHHhCCCEEEEEecccccccccccc---------cccchhhhhhhhcccccc
Confidence 356799999999877643 4443 4455665899999999999886432211 111122222222333333
Q ss_pred CCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEc
Q 004766 558 TQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAH 592 (732)
Q Consensus 558 ~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~ 592 (732)
...+++.++|+|+||.++..++.++|+....++..
T Consensus 81 ~~~~~~~lvGhS~Gg~ia~~~a~~~~~~~~~~~~~ 115 (264)
T d1r3da_ 81 TSEVPVILVGYSLGGRLIMHGLAQGAFSRLNLRGA 115 (264)
T ss_dssp CTTSEEEEEEETHHHHHHHHHHHHTTTTTSEEEEE
T ss_pred cccCceeeeeecchHHHHHHHHHhCchhccccccc
Confidence 45578999999999999999999999987776643
|
| >d1mj5a_ c.69.1.8 (A:) Haloalkane dehalogenase {Sphingomonas paucimobilis, UT26, LinB [TaxId: 13689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloalkane dehalogenase domain: Haloalkane dehalogenase species: Sphingomonas paucimobilis, UT26, LinB [TaxId: 13689]
Probab=99.22 E-value=6.6e-11 Score=117.78 Aligned_cols=118 Identities=8% Similarity=-0.008 Sum_probs=79.0
Q ss_pred cCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCC
Q 004766 459 KDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKK 538 (732)
Q Consensus 459 ~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~ 538 (732)
-+| .+|++... |..|+||++||.+++.. .|... ...|+ .+|.|+++|.||.|.....- .....
T Consensus 15 ~~g-~~i~y~~~--------G~g~~vvllHG~~~~~~--~~~~~-~~~L~-~~~~vi~~Dl~G~G~S~~~~----~~~~~ 77 (298)
T d1mj5a_ 15 IKG-RRMAYIDE--------GTGDPILFQHGNPTSSY--LWRNI-MPHCA-GLGRLIACDLIGMGDSDKLD----PSGPE 77 (298)
T ss_dssp ETT-EEEEEEEE--------SCSSEEEEECCTTCCGG--GGTTT-GGGGT-TSSEEEEECCTTSTTSCCCS----SCSTT
T ss_pred ECC-EEEEEEEE--------cCCCcEEEECCCCCCHH--HHHHH-HHHHh-cCCEEEEEeCCCCCCCCCCc----ccccc
Confidence 389 89886532 34588999999877643 34433 34567 78999999999987543210 01111
Q ss_pred ccHHHHHHHHHHH-HHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCc
Q 004766 539 QNCFDDFISASEY-LISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGV 595 (732)
Q Consensus 539 ~~~~~D~~~~~~~-l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~ 595 (732)
.....+..+.+.. +.+.. ..+++.++|+|+||.++..++.++|+++.++++..+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~--~~~~~~lvGhS~Gg~va~~~a~~~p~~v~~l~~~~~~ 133 (298)
T d1mj5a_ 78 RYAYAEHRDYLDALWEALD--LGDRVVLVVHDWGSALGFDWARRHRERVQGIAYMEAI 133 (298)
T ss_dssp SSCHHHHHHHHHHHHHHTT--CTTCEEEEEEHHHHHHHHHHHHHTGGGEEEEEEEEEC
T ss_pred ccccchhhhhhcccccccc--ccccCeEEEecccchhHHHHHHHHHhhhheeeccccc
Confidence 1223344444333 33432 3468999999999999999999999999998876544
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.21 E-value=2.3e-09 Score=111.08 Aligned_cols=246 Identities=8% Similarity=-0.014 Sum_probs=144.5
Q ss_pred EEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecc-cc--cceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCC
Q 004766 134 LIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEAD-AL--SWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGT 210 (732)
Q Consensus 134 ~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~-~~--~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~ 210 (732)
+..++|||||++||+... ...|+|||+++++.... .. ....+..++|+||++.|+....+
T Consensus 10 It~~~~s~dg~~la~~~~-----~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D------------ 72 (371)
T d1k8kc_ 10 ISCHAWNKDRTQIAICPN-----NHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTD------------ 72 (371)
T ss_dssp CCEEEECTTSSEEEEECS-----SSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETT------------
T ss_pred eEEEEECCCCCEEEEEeC-----CCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECC------------
Confidence 447899999999997632 24799999998863221 11 11235789999999988876432
Q ss_pred cccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccC
Q 004766 211 ETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRD 290 (732)
Q Consensus 211 ~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~ 290 (732)
..|++|++.++.......+. .....+..+.|+|||++++..+.++ .-.+|.++.....
T Consensus 73 -------~~i~vWd~~~~~~~~~~~~~--~~~~~v~~i~~~p~~~~l~~~s~d~---~i~i~~~~~~~~~---------- 130 (371)
T d1k8kc_ 73 -------RNAYVWTLKGRTWKPTLVIL--RINRAARCVRWAPNEKKFAVGSGSR---VISICYFEQENDW---------- 130 (371)
T ss_dssp -------SCEEEEEEETTEEEEEEECC--CCSSCEEEEEECTTSSEEEEEETTS---SEEEEEEETTTTE----------
T ss_pred -------CeEEEEeecccccccccccc--cccccccccccccccccceeecccC---cceeeeeeccccc----------
Confidence 25788887655333222222 2223456889999999998776433 3455555533210
Q ss_pred CCCCcEEeeecccceE--EEEEecCCeEEEEeCCCCCCceEEEEeCCCCCC---------------ceEec-cCCCCCce
Q 004766 291 GLLPFVKLIDGFDAQY--EVIANDDTVFTFLTNKDAPKYKIIRVDLKEPND---------------WFEVI-PEAERDVL 352 (732)
Q Consensus 291 ~~~~~~~l~~~~~~~~--~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~---------------~~~l~-~~~~~~~l 352 (732)
.............+ ..|+|+|..|+..+.. ..+..+++..... -..+. .......+
T Consensus 131 --~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D----~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 204 (371)
T d1k8kc_ 131 --WVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCD----FKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWV 204 (371)
T ss_dssp --EEEEEECTTCCSCEEEEEECTTSSEEEEEETT----SCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCE
T ss_pred --ccccccccccccccccccccccccceeccccC----cEEEEEeeccCccccccccccccccccceeeeeeccCccCcE
Confidence 00011111111122 2488998877654432 2455555433210 00111 11122456
Q ss_pred eEEEEecCCEEEEEEecCCeeEEEEEeCCCCceeeecccccceeeEeecccCCcEEEEEEecCCCCceEEEEECCCC
Q 004766 353 ESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTE 429 (732)
Q Consensus 353 ~~~~~~~~~~l~~~~~~~g~~~l~~~d~~~g~~~~~l~~~~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~ 429 (732)
..+.+++++..+++...++ .|.+||+.+++.+..+......+..+.+++|+..+. + +...-..++.++...+
T Consensus 205 ~~~~~s~~g~~l~s~~~d~--~i~iwd~~~~~~~~~~~~~~~~v~s~~fs~d~~~la-~--g~d~~~~~~~~~~~~~ 276 (371)
T d1k8kc_ 205 HGVCFSANGSRVAWVSHDS--TVCLADADKKMAVATLASETLPLLAVTFITESSLVA-A--GHDCFPVLFTYDSAAG 276 (371)
T ss_dssp EEEEECSSSSEEEEEETTT--EEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEE-E--ETTSSCEEEEEETTTT
T ss_pred EEEEeecccccccccccCC--cceEEeeecccceeeeecccccceeeeecCCCCEEE-E--EcCCceEEEEeeCCCc
Confidence 7788888666666666664 689999987877666665556677888888886433 2 2233456777776554
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.20 E-value=5.7e-09 Score=106.33 Aligned_cols=235 Identities=14% Similarity=0.021 Sum_probs=145.7
Q ss_pred EEEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCce--ecc-cccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCC
Q 004766 132 AALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIV--EAD-ALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDA 208 (732)
Q Consensus 132 ~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~--~~~-~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~ 208 (732)
-.+..++|||||++|+.... ...|++||+..... ... ...........|+||+..++....+
T Consensus 98 ~~I~~v~~s~dg~~l~s~~~-----dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d---------- 162 (337)
T d1gxra_ 98 NYIRSCKLLPDGCTLIVGGE-----ASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSD---------- 162 (337)
T ss_dssp SBEEEEEECTTSSEEEEEES-----SSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETT----------
T ss_pred CcEEEEEEcCCCCEEEEeec-----ccccccccccccccccccccccccccccccccccccccccccccc----------
Confidence 34778999999999875532 24799999875542 111 1111123678899999988766432
Q ss_pred CCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccc
Q 004766 209 GTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKK 288 (732)
Q Consensus 209 ~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~ 288 (732)
..+..+++.++. +.............++|+++|+.++....+ ..+.++|+.++.
T Consensus 163 ---------~~i~~~~~~~~~----~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d-----~~v~i~d~~~~~-------- 216 (337)
T d1gxra_ 163 ---------GNIAVWDLHNQT----LVRQFQGHTDGASCIDISNDGTKLWTGGLD-----NTVRSWDLREGR-------- 216 (337)
T ss_dssp ---------SCEEEEETTTTE----EEEEECCCSSCEEEEEECTTSSEEEEEETT-----SEEEEEETTTTE--------
T ss_pred ---------cccccccccccc----cccccccccccccccccccccccccccccc-----ccccccccccce--------
Confidence 357888887643 122222223345678999999998876543 347888887632
Q ss_pred cCCCCCcEEeeecccceEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecCCEEEEEEe
Q 004766 289 RDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYL 368 (732)
Q Consensus 289 ~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~~l~~~~~ 368 (732)
...............|+|+++.|+..+. ...+..+|+.++. ......+ ...+..+.+++++.++++..
T Consensus 217 -----~~~~~~~~~~i~~l~~~~~~~~l~~~~~----d~~i~i~d~~~~~-~~~~~~~--~~~i~~v~~s~~g~~l~s~s 284 (337)
T d1gxra_ 217 -----QLQQHDFTSQIFSLGYCPTGEWLAVGME----SSNVEVLHVNKPD-KYQLHLH--ESCVLSLKFAYCGKWFVSTG 284 (337)
T ss_dssp -----EEEEEECSSCEEEEEECTTSSEEEEEET----TSCEEEEETTSSC-EEEECCC--SSCEEEEEECTTSSEEEEEE
T ss_pred -----eecccccccceEEEEEcccccccceecc----ccccccccccccc-ccccccc--ccccceEEECCCCCEEEEEe
Confidence 1111111111111247888888776544 2358888988776 2333333 35688899998777777777
Q ss_pred cCCeeEEEEEeCCCCceeeecccccceeeEeecccCCcEEEEEEecCCCCceEEEEEC
Q 004766 369 SDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNL 426 (732)
Q Consensus 369 ~~g~~~l~~~d~~~g~~~~~l~~~~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~ 426 (732)
.++ .|++||..+++.+..+. ..+.+..+.++++++.|+ +.+. -..+..||+
T Consensus 285 ~Dg--~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~d~~~l~-t~s~---D~~I~vWdl 335 (337)
T d1gxra_ 285 KDN--LLNAWRTPYGASIFQSK-ESSSVLSCDISVDDKYIV-TGSG---DKKATVYEV 335 (337)
T ss_dssp TTS--EEEEEETTTCCEEEEEE-CSSCEEEEEECTTSCEEE-EEET---TSCEEEEEE
T ss_pred CCC--eEEEEECCCCCEEEEcc-CCCCEEEEEEeCCCCEEE-EEeC---CCeEEEEEE
Confidence 774 68999998887654443 355677888899988654 3322 134666553
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.20 E-value=1.1e-09 Score=109.55 Aligned_cols=240 Identities=14% Similarity=0.049 Sum_probs=144.3
Q ss_pred CCCEEEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecccc--cceeeeeEEEEeCCcEEEEEEecCCCCCCCC
Q 004766 129 DGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADAL--SWFKFSSIAWTHDSKGFFYSRYPAPKEGKDM 206 (732)
Q Consensus 129 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~--~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~ 206 (732)
++...+..++|||||++||-.. . ..+|++||+++|+.+.... .......++|+|||+.+ .+..
T Consensus 10 GH~~~V~~l~~s~dg~~l~s~s-~----Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~~-~~~~--------- 74 (299)
T d1nr0a2 10 GHNKAITALSSSADGKTLFSAD-A----EGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLF-TVSW--------- 74 (299)
T ss_dssp CCSSCEEEEEECTTSSEEEEEE-T----TSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEE-EEET---------
T ss_pred CCCCCcEEEEECCCCCEEEEEc-C----CCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccceee-cccc---------
Confidence 3445578999999999987442 2 2479999999998653221 12234789999999744 3332
Q ss_pred CCCCcccCCcccEEEEEECCCCCCCC-eEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCccc
Q 004766 207 DAGTETDSNLYHEFYYHFLGTKQSED-ILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEG 285 (732)
Q Consensus 207 ~~~~~~~~~~~~~v~~~~lgt~~~~~-~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~ 285 (732)
...+.+|++....... ..+.... ......+.++|||+.++.... ..+.+++...
T Consensus 75 ----------d~~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~s~~g~~~~~~~~------~~i~~~~~~~------- 129 (299)
T d1nr0a2 75 ----------DDHLKVVPAGGSGVDSSKAVANKL--SSQPLGLAVSADGDIAVAACY------KHIAIYSHGK------- 129 (299)
T ss_dssp ----------TTEEEEECSSSSSSCTTSCCEEEC--SSCEEEEEECTTSSCEEEEES------SEEEEEETTE-------
T ss_pred ----------eeeEEEeccCCccccccccccccc--ccccccccccccccccccccc------cccccccccc-------
Confidence 2357777765432211 1111111 123457889999998765432 2355666432
Q ss_pred ccccCCCCCcEEeeecccceEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceE--eccCCCCCceeEEEEecCCEE
Q 004766 286 FKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFE--VIPEAERDVLESATAVNLNQM 363 (732)
Q Consensus 286 ~~~~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~--l~~~~~~~~l~~~~~~~~~~l 363 (732)
..............++|+++.++..+. +..|..+|++++. ... ...+. ..+..+.+++++..
T Consensus 130 ---------~~~~~~~~~~~~~~~s~~~~~l~~g~~----dg~i~~~d~~~~~-~~~~~~~~~~--~~i~~~~~~~~~~~ 193 (299)
T d1nr0a2 130 ---------LTEVPISYNSSCVALSNDKQFVAVGGQ----DSKVHVYKLSGAS-VSEVKTIVHP--AEITSVAFSNNGAF 193 (299)
T ss_dssp ---------EEEEECSSCEEEEEECTTSCEEEEEET----TSEEEEEEEETTE-EEEEEEEECS--SCEEEEEECTTSSE
T ss_pred ---------ccccccccccccccccccccccccccc----ccccccccccccc-cccccccccc--cccccccccccccc
Confidence 112222222233358899887776544 3468888887654 222 22332 56788888886666
Q ss_pred EEEEecCCeeEEEEEeCCCCceeeec---ccccceeeEeecccCCcEEEEEEecCCCCceEEEEECCCCC
Q 004766 364 IVSYLSDVKYVLQIRDLKNGSLLHQL---PIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 430 (732)
Q Consensus 364 ~~~~~~~g~~~l~~~d~~~g~~~~~l---~~~~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~~ 430 (732)
++....++ .|++|++.++.....+ ..+...+..+.++++++.++. .+. -..++.||+.+++
T Consensus 194 l~~~~~d~--~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s-gs~---dg~i~iwd~~~~~ 257 (299)
T d1nr0a2 194 LVATDQSR--KVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLAT-GSL---DNSVIVWNMNKPS 257 (299)
T ss_dssp EEEEETTS--CEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEE-EET---TSCEEEEETTCTT
T ss_pred cccccccc--ccccccccccccccccccccccccccccccccccccceEE-EcC---CCEEEEEECCCCC
Confidence 67776664 6889998766543322 223456778888999986553 222 2468899988764
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.18 E-value=4.8e-09 Score=106.09 Aligned_cols=248 Identities=8% Similarity=-0.041 Sum_probs=138.3
Q ss_pred CCCEEEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceeccc-ccceeeeeEEEEeCCcEEEEEEecCCCCCCCCC
Q 004766 129 DGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADA-LSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMD 207 (732)
Q Consensus 129 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~-~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~ 207 (732)
++.-.+..++|||||++||-.. ...+|+|||+.+++.+... ........++|+||++.|+....+..-......
T Consensus 53 GH~~~I~~l~~s~~~~~l~sgs-----~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~ 127 (340)
T d1tbga_ 53 GHLAKIYAMHWGTDSRLLVSAS-----QDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLK 127 (340)
T ss_dssp CCSSCEEEEEECTTSSEEEEEE-----TTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEESS
T ss_pred CCCCCEEEEEECCCCCEEEEEE-----CCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeeccccc
Confidence 3444577899999999988543 2247999999999865321 122234789999999999887654321000000
Q ss_pred CCCc----c---cCCcc-cE------------------EEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEE
Q 004766 208 AGTE----T---DSNLY-HE------------------FYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCI 261 (732)
Q Consensus 208 ~~~~----~---~~~~~-~~------------------v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~ 261 (732)
.... . ..... .. ...+...+. .................+.+++..++...
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (340)
T d1tbga_ 128 TREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETG----QQTTTFTGHTGDVMSLSLAPDTRLFVSGA 203 (340)
T ss_dssp SSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTT----EEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred ccccccccceecccccccccccccccccccccccccccccccccccc----cccccccccceeEeeeccccccceeEEee
Confidence 0000 0 00000 00 000000000 00000000111223445666666665433
Q ss_pred ecCCcceEEEEEEeCCCCCCCcccccccCCCCCcEEeeecccceE-EEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCc
Q 004766 262 EENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQY-EVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDW 340 (732)
Q Consensus 262 ~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~ 340 (732)
.+ ..+.++|+.++. +...+........ ..|+|+|+.|+..+. ...+..+++......
T Consensus 204 ~d-----~~v~i~d~~~~~-------------~~~~~~~h~~~i~~v~~~p~~~~l~s~s~----d~~i~~~~~~~~~~~ 261 (340)
T d1tbga_ 204 CD-----ASAKLWDVREGM-------------CRQTFTGHESDINAICFFPNGNAFATGSD----DATCRLFDLRADQEL 261 (340)
T ss_dssp TT-----TEEEEEETTTTE-------------EEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEETTTTEEE
T ss_pred cC-----ceEEEEECCCCc-------------EEEEEeCCCCCeEEEEECCCCCEEEEEeC----CCeEEEEeecccccc
Confidence 22 347778877632 1222222111111 248899887776543 235778888766533
Q ss_pred eEeccCCCCCceeEEEEecCCEEEEEEecCCeeEEEEEeCCCCceeeecccccceeeEeecccCCcEEE
Q 004766 341 FEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVF 409 (732)
Q Consensus 341 ~~l~~~~~~~~l~~~~~~~~~~l~~~~~~~g~~~l~~~d~~~g~~~~~l~~~~g~v~~~~~s~d~~~l~ 409 (732)
..+........+..+.+++++.++++...++ .|++||+.+++.+..+..+.+.|..+.+++++..++
T Consensus 262 ~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg--~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~ 328 (340)
T d1tbga_ 262 MTYSHDNIICGITSVSFSKSGRLLLAGYDDF--NCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVA 328 (340)
T ss_dssp EEECCTTCCSCEEEEEECSSSCEEEEEETTS--CEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEE
T ss_pred cccccccccCceEEEEECCCCCEEEEEECCC--EEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEE
Confidence 3332233335578888888777777777774 689999988888777776677788899999988654
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.15 E-value=7.3e-09 Score=110.96 Aligned_cols=290 Identities=11% Similarity=-0.013 Sum_probs=147.7
Q ss_pred EeCCEEEEEEEcCC----CCeeEEEEEeCCCCCceEEeCCCCcCCCCCEEEEeEEECCCCcEEEEEEeccCCceEEEEEE
Q 004766 88 KRGNKYFYFHNTGL----QPQSVLYVQDSLDAKAKVLLDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLM 163 (732)
Q Consensus 88 ~~g~~~~~~~~~~~----~~~~~l~~r~~~~~~~~~l~D~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~ 163 (732)
++|.++.|..+... .....+|+-+..+++...+.. ..-.+..++|||||++|||+.+ .+|+++
T Consensus 71 pDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~~~l~~-------~~~~~~~~~~SPDG~~ia~~~~------~~l~~~ 137 (470)
T d2bgra1 71 PDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEER-------IPNNTQWVTWSPVGHKLAYVWN------NDIYVK 137 (470)
T ss_dssp TTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSC-------CCTTEEEEEECSSTTCEEEEET------TEEEEE
T ss_pred CCCCEEEEEECCcceeeeccCceEEEEECCCCccccccc-------CCccccccccccCcceeeEeec------ccceEE
Confidence 37778777654211 112345555544333221111 1112568899999999999853 279999
Q ss_pred ECCCCceecccccc-------------------eeeeeEEEEeCCcEEEEEEecCCCCC-CC---CC---CCCc------
Q 004766 164 RIEDQIVEADALSW-------------------FKFSSIAWTHDSKGFFYSRYPAPKEG-KD---MD---AGTE------ 211 (732)
Q Consensus 164 dl~~g~~~~~~~~~-------------------~~~~~~~WspDg~~l~y~~~~~~~~~-~~---~~---~~~~------ 211 (732)
++.+|+....+... .....+.|||||+.|+|.+.+..... .. .. ....
T Consensus 138 ~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~ 217 (470)
T d2bgra1 138 IEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVP 217 (470)
T ss_dssp SSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEE
T ss_pred ECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEecCCcCceEEEEeeccCCCCCCeeeeec
Confidence 99988754322110 01245789999999999987654211 00 00 0000
Q ss_pred -c---cCCcccEEEEEECCCCCCCCeEE--Ee-----cCCCCeeEEEeEEecCCcEEEEEEecCCc-ceEEEEEEeCCCC
Q 004766 212 -T---DSNLYHEFYYHFLGTKQSEDILC--WK-----DPEHPKYIFSGHVTEDGQYLVMCIEENCD-PVNKVYYCDLSAL 279 (732)
Q Consensus 212 -~---~~~~~~~v~~~~lgt~~~~~~~v--~~-----~~~~~~~~~~~~~SpDg~~l~~~~~~~~~-~~~~l~~~d~~~~ 279 (732)
. .......++++++.++....... .. ......+...+.|+++++.+++...+..+ ....++.+|..++
T Consensus 218 ~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~r~~~~~~~~~~~~d~~tg 297 (470)
T d2bgra1 218 YPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSG 297 (470)
T ss_dssp CCBTTSCCCEEEEEEEEGGGCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTT
T ss_pred cccccccCCcceEEEEECCCcceeeeccccccCCccccCCCCceEEEEEEcCCCceeEEEeeccCCceEEEEEEecCCCC
Confidence 0 00112345666665443221110 00 01122344566777777765554433321 0122333333221
Q ss_pred CCC-cc-------------c--------ccc---------------------cCCCCCcEEeeecccceEEEEEecCCeE
Q 004766 280 PEG-LE-------------G--------FKK---------------------RDGLLPFVKLIDGFDAQYEVIANDDTVF 316 (732)
Q Consensus 280 ~~~-~~-------------~--------~~~---------------------~~~~~~~~~l~~~~~~~~~~~s~dg~~l 316 (732)
... +. . +.. +........++.+.......++++++.+
T Consensus 298 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~~dg~~~ly~~~~~g~~~~~lt~g~~~v~~~~~~d~~~i 377 (470)
T d2bgra1 298 RWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFITKGTWEVIGIEALTSDYL 377 (470)
T ss_dssp EEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSCCEESCCSSSCEEEEEEECSSEE
T ss_pred cEEEEEEEeeeeeeccceeecccCCCceeeecCCCcEEEEeccCcCceeEEEeccCCceeeeccCCeeEEEEEEECCCEE
Confidence 100 00 0 000 0000012223322222223467788999
Q ss_pred EEEeCCCC---CCceEEEEeCCCCCCceEeccCC--CCCceeEEEEecC-CEEEEEEecCCeeEEEEEeCCCCceeeecc
Q 004766 317 TFLTNKDA---PKYKIIRVDLKEPNDWFEVIPEA--ERDVLESATAVNL-NQMIVSYLSDVKYVLQIRDLKNGSLLHQLP 390 (732)
Q Consensus 317 ~~~s~~~~---~~~~l~~~d~~~~~~~~~l~~~~--~~~~l~~~~~~~~-~~l~~~~~~~g~~~l~~~d~~~g~~~~~l~ 390 (732)
||.++... ...+||++++.++...+.|.... ....+..+.+++| ++++..+.....+.+.+++..+|+.++.|+
T Consensus 378 yf~a~~~~~~p~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~s~~fSpdgky~~~~~s~~~~P~~~l~~~~~g~~v~~le 457 (470)
T d2bgra1 378 YYISNEYKGMPGGRNLYKIQLSDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVLE 457 (470)
T ss_dssp EEEESCGGGCTTCBEEEEEETTCTTCEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTTEEEEEEE
T ss_pred EEEEecCCCCcceEEEEEEECCCCCceeEecccccCCCCCEEEEEECCCCCEEEEEecCCCCCeEEEEECCCCCEEEEEe
Confidence 99887532 23469999998765444444322 1234567888886 456667766666778888888888766664
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.10 E-value=5.2e-09 Score=108.16 Aligned_cols=287 Identities=6% Similarity=-0.100 Sum_probs=145.1
Q ss_pred CcEEeCCEEEEEEEcCCCCeeEEEEEeCCCCCceEEeCCCCcCCCCCEEEEeEEECCCCcEEEEEEec-----cCCceEE
Q 004766 85 APFKRGNKYFYFHNTGLQPQSVLYVQDSLDAKAKVLLDPNTLSDDGTAALIKVSVSEDAKYLAYALSY-----SGSDWAT 159 (732)
Q Consensus 85 ~p~~~g~~~~~~~~~~~~~~~~l~~r~~~~~~~~~l~D~~~l~~~~~~~~~~~~~SPDG~~la~~~~~-----~G~e~~~ 159 (732)
.|..+|...|............+|..+...++..-.+..... ..+.|||||++|+++... .|+....
T Consensus 26 a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~--------~~~a~spDg~~i~~~~~~~~~~~~g~~d~~ 97 (368)
T d1mdah_ 26 GPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFL--------SLAVAGHSGSDFALASTSFARSAKGKRTDY 97 (368)
T ss_dssp CCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTT--------CEEEECTTSSCEEEEEEEETTTTSSSEEEE
T ss_pred ccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCCC--------CcceECCCCCEEEEEcccCccccccccCCe
Confidence 455567665544322222224588887554432222222111 258899999999998653 2455568
Q ss_pred EEEEECCCCceecccc--------cceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCCcccEEEEEECCCCCCC
Q 004766 160 IKLMRIEDQIVEADAL--------SWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSE 231 (732)
Q Consensus 160 i~v~dl~~g~~~~~~~--------~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~ 231 (732)
|++||+.+++.+.... .+.....++|||||++|++.... +..++++++.++...
T Consensus 98 v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~------------------~~~v~~~d~~~~~~~ 159 (368)
T d1mdah_ 98 VEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFG------------------SSAAAGLSVPGASDD 159 (368)
T ss_dssp EEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECS------------------SSCEEEEEETTTEEE
T ss_pred EEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCC------------------CCeEEEEECCCCcEe
Confidence 9999999998543211 11112568999999999987432 235778888765322
Q ss_pred CeEEEecCCCCee-----EEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCCCCcEEeeecccceE
Q 004766 232 DILCWKDPEHPKY-----IFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQY 306 (732)
Q Consensus 232 ~~~v~~~~~~~~~-----~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 306 (732)
.....+..... ...+.+++||+.+++...... ...+........ . . ......
T Consensus 160 --~~~~~~~~~~~~~~~~~~~v~~~~Dg~~~~~~~~~~~---~~~~~~~~~~~~-----------~--~-----~~~~~~ 216 (368)
T d1mdah_ 160 --QLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAP---AAAGIVGAQCTG-----------A--Q-----NCSSQA 216 (368)
T ss_dssp --EEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSC---CCCEECCCCSCT-----------T--S-----CBCSCC
T ss_pred --EEeeccCcceEccCCCceEEEEcCCCCEEEEEecCCc---eeeeeeeccccc-----------c--c-----ccceee
Confidence 11121111100 012456777776665543322 111211111000 0 0 000000
Q ss_pred EEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCC-----------CCCceeEEEEecC-CEEEEEEecCC---
Q 004766 307 EVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEA-----------ERDVLESATAVNL-NQMIVSYLSDV--- 371 (732)
Q Consensus 307 ~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~-----------~~~~l~~~~~~~~-~~l~~~~~~~g--- 371 (732)
..+.+++.. +.+. ..+++.+++.... ...+.... .......+.++++ +.+++....+.
T Consensus 217 ~~~~~~g~~--~~~~----~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~ 289 (368)
T d1mdah_ 217 AQANYPGML--VWAV----ASSILQGDIPAAG-ATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSC 289 (368)
T ss_dssp EEETTTTEE--EECB----SSCCEEEECCSSC-CEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCT
T ss_pred cccccCcEE--EEec----CCCEEEEeecCCc-eEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCcee
Confidence 112222211 1111 1123333333222 01000000 0000123555654 55666554432
Q ss_pred ---eeEEEEEeCCCCceeeecccccceeeEeecccCCcEEEEEEecCCCCceEEEEECCCCC
Q 004766 372 ---KYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 430 (732)
Q Consensus 372 ---~~~l~~~d~~~g~~~~~l~~~~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~~ 430 (732)
..+|+++|..+++.+..+..+ ..+..+.+++||+.++|...+. -..++.||..+++
T Consensus 290 ~~~~~~v~v~D~~t~~~~~~~~~~-~~~~~~a~spDG~~~ly~s~~~--~~~v~v~D~~tgk 348 (368)
T d1mdah_ 290 LAAAENTSSVTASVGQTSGPISNG-HDSDAIIAAQDGASDNYANSAG--TEVLDIYDAASDQ 348 (368)
T ss_dssp TSCEEEEEEEESSSCCEEECCEEE-EEECEEEECCSSSCEEEEEETT--TTEEEEEESSSCE
T ss_pred ecCCceEEEEECCCCcEeEEecCC-CceeEEEECCCCCEEEEEEeCC--CCeEEEEECCCCC
Confidence 357999999989876666543 4566788999998655544443 3589999999885
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.09 E-value=6.8e-09 Score=109.69 Aligned_cols=129 Identities=13% Similarity=-0.027 Sum_probs=81.3
Q ss_pred eEEeCCCCcCCCCCEEEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecccccceeeeeEEEEeCCcEEEEEEe
Q 004766 118 KVLLDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWFKFSSIAWTHDSKGFFYSRY 197 (732)
Q Consensus 118 ~~l~D~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~~~~~~~~~~WspDg~~l~y~~~ 197 (732)
+++++++.... .+.+++|.+.+.++...+ ..+|+|||+++++.+.....+....+++|||||++||...
T Consensus 12 ~~~~~~~~~p~-------~~~~~~d~~~~~~V~~~~---dg~v~vwD~~t~~~~~~l~~g~~~~~vafSPDGk~l~~~~- 80 (426)
T d1hzua2 12 KVLVKPEDRPK-------KQLNDLDLPNLFSVTLRD---AGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIG- 80 (426)
T ss_dssp EESSCGGGSCS-------SCCSCCCGGGEEEEEETT---TTEEEEEETTTCSEEEEEECCSSEEEEEECTTSCEEEEEE-
T ss_pred eeeCCcccCCC-------cccccCCCCeEEEEEEcC---CCEEEEEECCCCcEEEEEeCCCCeeEEEECCCCCEEEEEe-
Confidence 56665554421 345778887776665432 2489999999999765332222357899999999887653
Q ss_pred cCCCCCCCCCCCCcccCCcccEEEEEECCCCCCCCeEEEecC-CCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeC
Q 004766 198 PAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDP-EHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDL 276 (732)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~-~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~ 276 (732)
+...|.+|++.++......-.... .......++.|||||++|+...... ..+.++|.
T Consensus 81 ------------------~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~----~~v~i~d~ 138 (426)
T d1hzua2 81 ------------------RDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWP----PQFAIMDG 138 (426)
T ss_dssp ------------------TTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEES----SEEEEEET
T ss_pred ------------------CCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCC----CeEEEEcC
Confidence 223689999987754321111111 1123445778899999987665432 34677787
Q ss_pred CCC
Q 004766 277 SAL 279 (732)
Q Consensus 277 ~~~ 279 (732)
+++
T Consensus 139 ~~~ 141 (426)
T d1hzua2 139 ETL 141 (426)
T ss_dssp TTC
T ss_pred Ccc
Confidence 764
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.09 E-value=1.3e-08 Score=101.12 Aligned_cols=230 Identities=13% Similarity=0.060 Sum_probs=130.3
Q ss_pred CCEEEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecccc-cceeeeeEEEEeCCcEEEEEEecCCCCCCCCCC
Q 004766 130 GTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADAL-SWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDA 208 (732)
Q Consensus 130 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~-~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~ 208 (732)
+...+..++|||||++||-+. +..+|+|||+++++.+.... .......++|+|++..++......
T Consensus 16 H~~~I~~l~~sp~~~~l~s~s-----~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~--------- 81 (317)
T d1vyhc1 16 HRSPVTRVIFHPVFSVMVSAS-----EDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADM--------- 81 (317)
T ss_dssp CSSCEEEEEECSSSSEEEEEE-----SSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTS---------
T ss_pred CCCCeEEEEEcCCCCEEEEEe-----CCCeEEEEECCCCCEEEEEeCCCCcEEEEeeeccccccccccccc---------
Confidence 344578999999999887442 22479999999998543211 122347899999999888765332
Q ss_pred CCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccc
Q 004766 209 GTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKK 288 (732)
Q Consensus 209 ~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~ 288 (732)
.+..++..... ................++|++..++....+ ..+.++++.++..
T Consensus 82 ----------~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-----~~~~~~~~~~~~~------- 135 (317)
T d1vyhc1 82 ----------TIKLWDFQGFE----CIRTMHGHDHNVSSVSIMPNGDHIVSASRD-----KTIKMWEVQTGYC------- 135 (317)
T ss_dssp ----------CCCEEETTSSC----EEECCCCCSSCEEEEEECSSSSEEEEEETT-----SEEEEEETTTCCE-------
T ss_pred ----------ccccccccccc----cccccccccccceeeeccCCCceEEeeccC-----cceeEeeccccee-------
Confidence 12333333221 111111122344578899999998765533 2355667665321
Q ss_pred cCCCCCcEEeeecccce-EEEEEecCCeEEEEeCCC--------------------------------------------
Q 004766 289 RDGLLPFVKLIDGFDAQ-YEVIANDDTVFTFLTNKD-------------------------------------------- 323 (732)
Q Consensus 289 ~~~~~~~~~l~~~~~~~-~~~~s~dg~~l~~~s~~~-------------------------------------------- 323 (732)
...+....... ...+++++..|+..+..+
T Consensus 136 ------~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 209 (317)
T d1vyhc1 136 ------VKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSE 209 (317)
T ss_dssp ------EEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC
T ss_pred ------eeEEccCCCcceeeecccCCCEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccce
Confidence 11111111000 012333333332221110
Q ss_pred --------------CCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecCCEEEEEEecCCeeEEEEEeCCCCceeeec
Q 004766 324 --------------APKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQL 389 (732)
Q Consensus 324 --------------~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~~l~~~~~~~g~~~l~~~d~~~g~~~~~l 389 (732)
.....+..+++.++.....+..+. ..+..+.+++++.++++...++ .|++||+.+++.+..+
T Consensus 210 ~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~ 285 (317)
T d1vyhc1 210 TKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHD--NWVRGVLFHSGGKFILSCADDK--TLRVWDYKNKRCMKTL 285 (317)
T ss_dssp -------CCEEEEEETTSEEEEEETTTTEEEEEEECCS--SCEEEEEECSSSSCEEEEETTT--EEEEECCTTSCCCEEE
T ss_pred eeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCC--CCEEEEEECCCCCEEEEEECCC--eEEEEECCCCcEEEEE
Confidence 001234445555544223333332 4567788887667777777774 6899999888877777
Q ss_pred ccccceeeEeecccCCcEEE
Q 004766 390 PIEIGSVNAISARREDSVVF 409 (732)
Q Consensus 390 ~~~~g~v~~~~~s~d~~~l~ 409 (732)
..+.+.|..++++++++.|+
T Consensus 286 ~~h~~~V~~~~~s~~~~~l~ 305 (317)
T d1vyhc1 286 NAHEHFVTSLDFHKTAPYVV 305 (317)
T ss_dssp ECCSSCEEEEEECSSSSCEE
T ss_pred cCCCCCEEEEEEcCCCCEEE
Confidence 66667788889999988654
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.08 E-value=2.7e-09 Score=108.39 Aligned_cols=118 Identities=10% Similarity=0.113 Sum_probs=73.4
Q ss_pred eEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecc-ccc-ceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCccc
Q 004766 136 KVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEAD-ALS-WFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETD 213 (732)
Q Consensus 136 ~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~-~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~ 213 (732)
++++|++|++|+.... ..+|.|||+++++.+.. ... .....+++|||||+.+|.+..
T Consensus 1 g~a~~~~~~~l~~~~~-----~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~---------------- 59 (346)
T d1jmxb_ 1 GPALKAGHEYMIVTNY-----PNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNN---------------- 59 (346)
T ss_dssp CCCCCTTCEEEEEEET-----TTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEET----------------
T ss_pred CccCCCCCcEEEEEcC-----CCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEEC----------------
Confidence 3679999999987642 13799999999987642 222 222368999999998887642
Q ss_pred CCcccEEEEEECCCCCCCCeEEEecCCCCe----eEEEeEEecCCcEEEEEEecCC-------cceEEEEEEeCCC
Q 004766 214 SNLYHEFYYHFLGTKQSEDILCWKDPEHPK----YIFSGHVTEDGQYLVMCIEENC-------DPVNKVYYCDLSA 278 (732)
Q Consensus 214 ~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~----~~~~~~~SpDg~~l~~~~~~~~-------~~~~~l~~~d~~~ 278 (732)
....|+.+++.++... ..+....... ...++++||||+++++...... .....+.+++..+
T Consensus 60 --~~~~v~~~d~~t~~~~--~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~ 131 (346)
T d1jmxb_ 60 --HYGDIYGIDLDTCKNT--FHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTAD 131 (346)
T ss_dssp --TTTEEEEEETTTTEEE--EEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGG
T ss_pred --CCCcEEEEeCccCeee--eeecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEeccc
Confidence 3357889998876321 1111111110 1136789999999977653321 0123466666554
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.08 E-value=8.4e-09 Score=105.44 Aligned_cols=275 Identities=13% Similarity=0.040 Sum_probs=139.1
Q ss_pred CCCcEEeCCEEEEEEEcCCCCeeEEEEEeCCCCCceEEeCCCCcCCCCCEEEEeEEECCCCcEEEEEEecc-----CCce
Q 004766 83 YDAPFKRGNKYFYFHNTGLQPQSVLYVQDSLDAKAKVLLDPNTLSDDGTAALIKVSVSEDAKYLAYALSYS-----GSDW 157 (732)
Q Consensus 83 ~~~p~~~g~~~~~~~~~~~~~~~~l~~r~~~~~~~~~l~D~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~-----G~e~ 157 (732)
...|.++|.++|..-.........+|+.+...++..-.++.... ..++|||||++|+++.... |...
T Consensus 6 ~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~--------~~~a~SpDg~~l~v~~~~~~~~~~g~~d 77 (355)
T d2bbkh_ 6 LEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFL--------PNPVVADDGSFIAHASTVFSRIARGERT 77 (355)
T ss_dssp CCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSS--------CEEEECTTSSCEEEEEEEEEETTEEEEE
T ss_pred eEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCCC--------CceEEcCCCCEEEEEeCCCccccccCCC
Confidence 34677888887655333333445688877554432111221111 2678999999998775421 2334
Q ss_pred EEEEEEECCCCceecccc--------cceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCCcccEEEEEECCCCC
Q 004766 158 ATIKLMRIEDQIVEADAL--------SWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQ 229 (732)
Q Consensus 158 ~~i~v~dl~~g~~~~~~~--------~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~ 229 (732)
..|++||+++++.+.... .......++|+|||+.+++..... ...++.++..++.
T Consensus 78 ~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~-----------------~~~~~~~~~~~~~ 140 (355)
T d2bbkh_ 78 DYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSP-----------------APAVGVVDLEGKA 140 (355)
T ss_dssp EEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSS-----------------SCEEEEEETTTTE
T ss_pred CEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCC-----------------CceeeeeecCCCc
Confidence 589999999998543211 011125689999999998875322 1223333433321
Q ss_pred CCCeEEEecCCCC-----eeEEEeEEecCCcEEEEEEecCC---------------------------------cceEEE
Q 004766 230 SEDILCWKDPEHP-----KYIFSGHVTEDGQYLVMCIEENC---------------------------------DPVNKV 271 (732)
Q Consensus 230 ~~~~~v~~~~~~~-----~~~~~~~~SpDg~~l~~~~~~~~---------------------------------~~~~~l 271 (732)
... ....+... .-...+.+++||+.+++...... .....+
T Consensus 141 ~~~--~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (355)
T d2bbkh_ 141 FKR--MLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKI 218 (355)
T ss_dssp EEE--EEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEE
T ss_pred Eee--EEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCCCeEEEecCCCeE
Confidence 100 00000000 00012334444444433221110 012346
Q ss_pred EEEeCCCCCCCcccccccCCCCC-c-EEeeecccceEEEEEecCCeEEEEeCCC------CCCceEEEEeCCCCCCceEe
Q 004766 272 YYCDLSALPEGLEGFKKRDGLLP-F-VKLIDGFDAQYEVIANDDTVFTFLTNKD------APKYKIIRVDLKEPNDWFEV 343 (732)
Q Consensus 272 ~~~d~~~~~~~~~~~~~~~~~~~-~-~~l~~~~~~~~~~~s~dg~~l~~~s~~~------~~~~~l~~~d~~~~~~~~~l 343 (732)
+++++.++........ ...... . ..... .......+++++..+|+..... .....|..+|+.+++....+
T Consensus 219 ~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~p-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~ 296 (355)
T d2bbkh_ 219 HQIDLSSGDAKFLPAV-EALTEAERADGWRP-GGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKF 296 (355)
T ss_dssp EEEECTTSSCEECCCE-ESSCHHHHHTTEEE-CSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEE
T ss_pred EEEecCCCcEEEEecc-CCcccceEeeeeec-cceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEe
Confidence 7777665321100000 000000 0 00000 0111234788998888765432 12357899999887633333
Q ss_pred ccCCCCCceeEEEEecCCE--EEEEEecCCeeEEEEEeCCCCceeeeccc
Q 004766 344 IPEAERDVLESATAVNLNQ--MIVSYLSDVKYVLQIRDLKNGSLLHQLPI 391 (732)
Q Consensus 344 ~~~~~~~~l~~~~~~~~~~--l~~~~~~~g~~~l~~~d~~~g~~~~~l~~ 391 (732)
+.. ..+..+.+++|++ +++....+ ..|++||+++|+.++.|..
T Consensus 297 -~~~--~~~~~~a~spDG~~~l~v~~~~d--~~i~v~D~~tg~~~~~i~~ 341 (355)
T d2bbkh_ 297 -EMG--HEIDSINVSQDEKPLLYALSTGD--KTLYIHDAESGEELRSVNQ 341 (355)
T ss_dssp -EEE--EEECEEEECCSSSCEEEEEETTT--TEEEEEETTTCCEEEEECC
T ss_pred -cCC--CCEEEEEEcCCCCeEEEEEECCC--CEEEEEECCCCCEEEEEeC
Confidence 222 3466788888643 44444444 5799999999998777763
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.06 E-value=2.4e-08 Score=103.26 Aligned_cols=240 Identities=16% Similarity=0.071 Sum_probs=139.0
Q ss_pred EEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecccc-------------------cceeeeeEEEEeCCcEEE
Q 004766 133 ALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADAL-------------------SWFKFSSIAWTHDSKGFF 193 (732)
Q Consensus 133 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~-------------------~~~~~~~~~WspDg~~l~ 193 (732)
.+..++|||||++||-.. + ..|+|||+.+|+.+.... .......++|+|||+.|+
T Consensus 64 ~V~~l~fs~dg~~lasg~-----d-~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~ 137 (388)
T d1erja_ 64 VVCCVKFSNDGEYLATGC-----N-KTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLA 137 (388)
T ss_dssp CCCEEEECTTSSEEEEEC-----B-SCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEE
T ss_pred cEEEEEECCCCCEEEEEe-----C-CeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcce
Confidence 456889999999988542 2 369999999887432100 011135789999999888
Q ss_pred EEEecCCCCCCCCCCCCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEE
Q 004766 194 YSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYY 273 (732)
Q Consensus 194 y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~ 273 (732)
....+. .|..|+..++. .+.....+...+..+.+++++..++..... ..+.+
T Consensus 138 s~~~dg-------------------~v~i~~~~~~~----~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~-----~~i~~ 189 (388)
T d1erja_ 138 TGAEDR-------------------LIRIWDIENRK----IVMILQGHEQDIYSLDYFPSGDKLVSGSGD-----RTVRI 189 (388)
T ss_dssp EEETTS-------------------CEEEEETTTTE----EEEEECCCSSCEEEEEECTTSSEEEEEETT-----SEEEE
T ss_pred eccccc-------------------ccccccccccc----cccccccccccccccccccccccccccccc-----eeeee
Confidence 765332 47788876542 222222223345678999999998766532 34777
Q ss_pred EeCCCCCCCcccccccCCCCCcEEeeecccceE-EEEEe-cCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCC----
Q 004766 274 CDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQY-EVIAN-DDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEA---- 347 (732)
Q Consensus 274 ~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~s~-dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~---- 347 (732)
+|..+.. ............ ..+.+ ++..|+..+. ...|..+++.++.....+....
T Consensus 190 ~d~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----d~~i~i~~~~~~~~~~~~~~~~~~~~ 251 (388)
T d1erja_ 190 WDLRTGQ--------------CSLTLSIEDGVTTVAVSPGDGKYIAAGSL----DRAVRVWDSETGFLVERLDSENESGT 251 (388)
T ss_dssp EETTTTE--------------EEEEEECSSCEEEEEECSTTCCEEEEEET----TSCEEEEETTTCCEEEEEC------C
T ss_pred eeccccc--------------cccccccccccccccccCCCCCeEEEEcC----CCeEEEeecccCccceeecccccccc
Confidence 8877631 111111111111 22444 5655554333 2358888887765222222111
Q ss_pred -CCCceeEEEEecCCEEEEEEecCCeeEEEEEeCCCCceeeecc------------cccceeeEeecccCCcEEEEEEec
Q 004766 348 -ERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLP------------IEIGSVNAISARREDSVVFISFTS 414 (732)
Q Consensus 348 -~~~~l~~~~~~~~~~l~~~~~~~g~~~l~~~d~~~g~~~~~l~------------~~~g~v~~~~~s~d~~~l~~~~ss 414 (732)
....+..+.+++++.++++...++ .|.+||+.+++...... .....+..+.++++++.++. .+.
T Consensus 252 ~h~~~v~~l~~s~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s-g~~ 328 (388)
T d1erja_ 252 GHKDSVYSVVFTRDGQSVVSGSLDR--SVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILS-GSK 328 (388)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTS--EEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEE-EET
T ss_pred CCCCCEEEEEECCCCCEEEEEECCC--cEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEE-EeC
Confidence 124577888888666777777774 68888886554321111 11344667788888876543 332
Q ss_pred CCCCceEEEEECCCCC
Q 004766 415 FLIPGIVYQCNLKTET 430 (732)
Q Consensus 415 ~~~p~~~y~~d~~~~~ 430 (732)
-..++.||+.+++
T Consensus 329 ---dg~i~vwd~~~~~ 341 (388)
T d1erja_ 329 ---DRGVLFWDKKSGN 341 (388)
T ss_dssp ---TSEEEEEETTTCC
T ss_pred ---CCEEEEEECCCCc
Confidence 2579999998885
|
| >d1qo7a_ c.69.1.11 (A:) Bacterial epoxide hydrolase {Aspergillus niger [TaxId: 5061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Epoxide hydrolase domain: Bacterial epoxide hydrolase species: Aspergillus niger [TaxId: 5061]
Probab=99.06 E-value=7.2e-10 Score=116.08 Aligned_cols=119 Identities=14% Similarity=0.020 Sum_probs=85.1
Q ss_pred cCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcC------cEEEEEcccCCCCCchhHHhc
Q 004766 459 KDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLG------AVFCIANIRGGGEYGEEWHKG 532 (732)
Q Consensus 459 ~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G------~~v~~~~~rG~g~~g~~~~~~ 532 (732)
-|| ++|+..-+.... +..|.||++||.+++.. .|... ...|++.| |.|+++|.||.|....
T Consensus 89 i~G-~~iHf~h~~~~~----~~~~pLlLlHG~P~s~~--~w~~v-i~~La~~g~~~~~~f~VIaPDLpG~G~S~~----- 155 (394)
T d1qo7a_ 89 IEG-LTIHFAALFSER----EDAVPIALLHGWPGSFV--EFYPI-LQLFREEYTPETLPFHLVVPSLPGYTFSSG----- 155 (394)
T ss_dssp ETT-EEEEEEEECCSC----TTCEEEEEECCSSCCGG--GGHHH-HHHHHHHCCTTTCCEEEEEECCTTSTTSCC-----
T ss_pred ECC-EEEEEEEEeccC----CCCCEEEEeccccccHH--HHHHH-HHhhccccCCcccceeeecccccccCCCCC-----
Confidence 489 999987664432 45788999999998854 44443 45566577 9999999999875422
Q ss_pred ccccCCccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcC
Q 004766 533 GALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHV 593 (732)
Q Consensus 533 ~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~ 593 (732)
........+.++.+.+..|.+. ...++..+.|+|+||.++..++..+|+...++++..
T Consensus 156 -P~~~~~y~~~~~a~~~~~l~~~--lg~~~~~~vg~~~Gg~v~~~~a~~~p~~~~~~~l~~ 213 (394)
T d1qo7a_ 156 -PPLDKDFGLMDNARVVDQLMKD--LGFGSGYIIQGGDIGSFVGRLLGVGFDACKAVHLNL 213 (394)
T ss_dssp -CCSSSCCCHHHHHHHHHHHHHH--TTCTTCEEEEECTHHHHHHHHHHHHCTTEEEEEESC
T ss_pred -CCCCCccCHHHHHHHHHHHHhh--ccCcceEEEEecCchhHHHHHHHHhhccccceeEee
Confidence 1122234566677766666655 223578889999999999999999899888876654
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.02 E-value=1.5e-07 Score=93.00 Aligned_cols=232 Identities=10% Similarity=0.070 Sum_probs=139.9
Q ss_pred EEEEEeccCCceEEEEEEECCCCceecccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCCcccEEEEEEC
Q 004766 146 LAYALSYSGSDWATIKLMRIEDQIVEADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFL 225 (732)
Q Consensus 146 la~~~~~~G~e~~~i~v~dl~~g~~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l 225 (732)
-||+.+.++ .+|.|+|+++++.+.....+....+++|||||++|+.+. ....+|.+|++
T Consensus 3 ~~yV~~~~~---~~v~v~D~~t~~~~~~i~~g~~p~~va~spdG~~l~v~~------------------~~~~~i~v~d~ 61 (301)
T d1l0qa2 3 FAYIANSES---DNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVAN------------------AHSNDVSIIDT 61 (301)
T ss_dssp EEEEEETTT---TEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEE------------------GGGTEEEEEET
T ss_pred EEEEEECCC---CEEEEEECCCCeEEEEEECCCCceEEEEeCCCCEEEEEE------------------CCCCEEEEEEC
Confidence 366654333 279999999998664322222346799999999998764 23457999999
Q ss_pred CCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCCCCcEEeeecccce
Q 004766 226 GTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQ 305 (732)
Q Consensus 226 gt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 305 (732)
.++.. +..+.... ....+.+++||+++++..... ..+.+++..++. ....+.......
T Consensus 62 ~t~~~--~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~-------------~~~~~~~~~~~~ 119 (301)
T d1l0qa2 62 ATNNV--IATVPAGS---SPQGVAVSPDGKQVYVTNMAS----STLSVIDTTSNT-------------VAGTVKTGKSPL 119 (301)
T ss_dssp TTTEE--EEEEECSS---SEEEEEECTTSSEEEEEETTT----TEEEEEETTTTE-------------EEEEEECSSSEE
T ss_pred CCCce--eeeeeccc---ccccccccccccccccccccc----ceeeecccccce-------------eeeeccccccce
Confidence 87642 12222222 235789999999988765432 346777876632 122222222222
Q ss_pred EEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecCCE-EEEEEecCCeeEEEEEeCCCCc
Q 004766 306 YEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQ-MIVSYLSDVKYVLQIRDLKNGS 384 (732)
Q Consensus 306 ~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~~-l~~~~~~~g~~~l~~~d~~~g~ 384 (732)
...++|||+.+++....+ ..+..++..+... ...+... .....+.+.+++. +++..... ..+.+++....+
T Consensus 120 ~~~~~~dg~~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 191 (301)
T d1l0qa2 120 GLALSPDGKKLYVTNNGD---KTVSVINTVTKAV-INTVSVG--RSPKGIAVTPDGTKVYVANFDS--MSISVIDTVTNS 191 (301)
T ss_dssp EEEECTTSSEEEEEETTT---TEEEEEETTTTEE-EEEEECC--SSEEEEEECTTSSEEEEEETTT--TEEEEEETTTTE
T ss_pred EEEeecCCCeeeeeeccc---cceeeeeccccce-eeecccC--CCceEEEeeccccceeeecccc--ccccccccccee
Confidence 345899999888766543 3577788777652 2223332 3356677776544 44444333 356666665444
Q ss_pred eeeecccccceeeEeecccCCcEEEEEEecCCCCceEEEEECCCCC
Q 004766 385 LLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 430 (732)
Q Consensus 385 ~~~~l~~~~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~~ 430 (732)
....+..+ .....+.++++++.+++.... .....++.+|+.+++
T Consensus 192 ~~~~~~~~-~~~~~~~~~~~g~~~~v~~~~-~~~~~v~v~D~~t~~ 235 (301)
T d1l0qa2 192 VIDTVKVE-AAPSGIAVNPEGTKAYVTNVD-KYFNTVSMIDTGTNK 235 (301)
T ss_dssp EEEEEECS-SEEEEEEECTTSSEEEEEEEC-SSCCEEEEEETTTTE
T ss_pred eeeccccc-CCcceeecccccccccccccc-ceeeeeeeeecCCCe
Confidence 43333333 334466778889887765433 345689999998874
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.98 E-value=5.9e-08 Score=102.26 Aligned_cols=79 Identities=15% Similarity=-0.013 Sum_probs=49.1
Q ss_pred eeEEEEecCCE-EEEEEec--CC--eeEEEEEeCCCCceeeecc-------c--ccceeeEeecccCCcEEEEEEe-cCC
Q 004766 352 LESATAVNLNQ-MIVSYLS--DV--KYVLQIRDLKNGSLLHQLP-------I--EIGSVNAISARREDSVVFISFT-SFL 416 (732)
Q Consensus 352 l~~~~~~~~~~-l~~~~~~--~g--~~~l~~~d~~~g~~~~~l~-------~--~~g~v~~~~~s~d~~~l~~~~s-s~~ 416 (732)
+..+.+++++. +++.... ++ ...|.+||+++++...++. + ....+..+.+||||++++++.. +-.
T Consensus 306 v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~ 385 (426)
T d1hzua2 306 SLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKN 385 (426)
T ss_dssp CCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCTT
T ss_pred eeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECCCCCEEEEEEecCCC
Confidence 44566676543 3332111 11 1368999998887544331 1 1234567789999999988653 345
Q ss_pred CCceEEEEECCCCC
Q 004766 417 IPGIVYQCNLKTET 430 (732)
Q Consensus 417 ~p~~~y~~d~~~~~ 430 (732)
....+.++|..+.+
T Consensus 386 ~~~~i~v~D~~T~k 399 (426)
T d1hzua2 386 DSSALVVVDDKTLK 399 (426)
T ss_dssp SCCEEEEEETTTTE
T ss_pred CCCeEEEEECCCCe
Confidence 66789999988874
|
| >d2b61a1 c.69.1.40 (A:2-358) Homoserine O-acetyltransferase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: O-acetyltransferase domain: Homoserine O-acetyltransferase species: Haemophilus influenzae [TaxId: 727]
Probab=98.95 E-value=6.6e-09 Score=105.04 Aligned_cols=114 Identities=15% Similarity=0.138 Sum_probs=77.4
Q ss_pred CCccEEEEEcCCCCccCC------CCcChhH---HHHHHhcCcEEEEEcccCCCC--CchhHHhcc-----cccCCccHH
Q 004766 479 GSHPCLLYGYGGFNISVT------PSFSVSR---TILMRHLGAVFCIANIRGGGE--YGEEWHKGG-----ALAKKQNCF 542 (732)
Q Consensus 479 ~~~P~vv~~hG~~~~~~~------~~~~~~~---~~~l~~~G~~v~~~~~rG~g~--~g~~~~~~~-----~~~~~~~~~ 542 (732)
.+-++||+.|+--|.+.. +.|...+ -..++..-|-|+++|+-|++. .|..-.... ......-++
T Consensus 37 ~~~NaVlv~h~~tg~~~~~~~~~~~gWW~~liG~g~alDt~kyfVI~~n~lG~~~gSs~p~s~~p~tg~~~g~~FP~iti 116 (357)
T d2b61a1 37 EKNNAVLICHALTGDAEPYFDDGRDGWWQNFMGAGLALDTDRYFFISSNVLGGCKGTTGPSSINPQTGKPYGSQFPNIVV 116 (357)
T ss_dssp TCCCEEEEECCTTCCSCSCCSSSCCCTTGGGEETTSSEETTTCEEEEECCTTCSSSSSCTTSBCTTTSSBCGGGCCCCCH
T ss_pred CCCCEEEEcCCCCccccccccCCCCCcHHHhcCCCCccCCCceEEEEecccCCccccCCcCCCCCCCCCCCCcccccchh
Confidence 345899999997665432 2232221 234666779999999998653 121110000 112344678
Q ss_pred HHHHHHHHHHHHcCCCCCCcE-EEEecChhHHHHHHHHhhCCCeeeEEEEcCC
Q 004766 543 DDFISASEYLISAGYTQSRKL-CIEGGSNGGLLVGACINQRPDLFGCALAHVG 594 (732)
Q Consensus 543 ~D~~~~~~~l~~~~~~d~~~i-~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p 594 (732)
.|.+.+-.-|++. ..-+|| +++|+||||+.++..+.++||....+|+.+.
T Consensus 117 ~D~v~aq~~Ll~~--LGI~~l~~viG~SmGGmqAl~wa~~~Pd~v~~~i~i~~ 167 (357)
T d2b61a1 117 QDIVKVQKALLEH--LGISHLKAIIGGSFGGMQANQWAIDYPDFMDNIVNLCS 167 (357)
T ss_dssp HHHHHHHHHHHHH--TTCCCEEEEEEETHHHHHHHHHHHHSTTSEEEEEEESC
T ss_pred HHHHHHHHHHHHH--hCcceEEEEecccHHHHHHHHHHHhhhHHHhhhccccc
Confidence 9999998888865 233578 8889999999999999999999998877655
|
| >d1pjaa_ c.69.1.13 (A:) Palmitoyl protein thioesterase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterases domain: Palmitoyl protein thioesterase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.95 E-value=2.2e-09 Score=104.61 Aligned_cols=97 Identities=18% Similarity=0.157 Sum_probs=69.3
Q ss_pred EEEEEcCCCCccCCCCcChhHHHHHHhc--CcEEEEEcccCCCCCchhHHhcccccCCccHHHHHHHHHHHHHHcCCCCC
Q 004766 483 CLLYGYGGFNISVTPSFSVSRTILMRHL--GAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQS 560 (732)
Q Consensus 483 ~vv~~hG~~~~~~~~~~~~~~~~~l~~~--G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~ 560 (732)
.||++||..++.. .|... ...|.+. ||.|+++|.||.|.... ....+++++...+..++++. .
T Consensus 4 PvvllHG~~~~~~--~~~~~-~~~l~~~~~~~~v~~~d~~G~g~S~~---------~~~~~~~~~~~~l~~~l~~l--~- 68 (268)
T d1pjaa_ 4 PVIVVHGLFDSSY--SFRHL-LEYINETHPGTVVTVLDLFDGRESLR---------PLWEQVQGFREAVVPIMAKA--P- 68 (268)
T ss_dssp CEEEECCTTCCGG--GGHHH-HHHHHHHSTTCCEEECCSSCSGGGGS---------CHHHHHHHHHHHHHHHHHHC--T-
T ss_pred CEEEECCCCCCHH--HHHHH-HHHHHhhCCCeEEEEeCCCCCCCCCC---------ccccCHHHHHHHHHHHHhcc--C-
Confidence 3567899877643 44433 3444433 89999999999765321 12245677777777666653 3
Q ss_pred CcEEEEecChhHHHHHHHHhhCCC-eeeEEEEcCC
Q 004766 561 RKLCIEGGSNGGLLVGACINQRPD-LFGCALAHVG 594 (732)
Q Consensus 561 ~~i~i~G~S~GG~l~~~~~~~~p~-~f~a~v~~~p 594 (732)
+++.++|||+||.++..++.++|+ +.+.+|+..+
T Consensus 69 ~~~~lvGhS~GG~ia~~~a~~~p~~~v~~lvl~~~ 103 (268)
T d1pjaa_ 69 QGVHLICYSQGGLVCRALLSVMDDHNVDSFISLSS 103 (268)
T ss_dssp TCEEEEEETHHHHHHHHHHHHCTTCCEEEEEEESC
T ss_pred CeEEEEccccHHHHHHHHHHHCCccccceEEEECC
Confidence 799999999999999999999999 5888876654
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=98.95 E-value=6.8e-08 Score=97.31 Aligned_cols=264 Identities=11% Similarity=0.013 Sum_probs=129.4
Q ss_pred EEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCcee----cccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCC
Q 004766 134 LIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVE----ADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAG 209 (732)
Q Consensus 134 ~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~----~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~ 209 (732)
+..++|||||++|+.+...+ ..|++|++.++... ..........+++|||||+.|+.....
T Consensus 39 v~~la~spDG~~L~v~~~~d----~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~----------- 103 (333)
T d1ri6a_ 39 VQPMVVSPDKRYLYVGVRPE----FRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYN----------- 103 (333)
T ss_dssp CCCEEECTTSSEEEEEETTT----TEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETT-----------
T ss_pred EeEEEEeCCCCEEEEEECCC----CeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCCEEeecccC-----------
Confidence 34789999999996553222 36788888755421 111111123579999999999877432
Q ss_pred CcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCccccccc
Q 004766 210 TETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKR 289 (732)
Q Consensus 210 ~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~ 289 (732)
...+..++........ ............++.+||||++++...... ..+++++........
T Consensus 104 -------~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~----~~i~~~~~~~~~~~~------ 164 (333)
T d1ri6a_ 104 -------AGNVSVTRLEDGLPVG--VVDVVEGLDGCHSANISPDNRTLWVPALKQ----DRICLFTVSDDGHLV------ 164 (333)
T ss_dssp -------TTEEEEEEEETTEEEE--EEEEECCCTTBCCCEECTTSSEEEEEEGGG----TEEEEEEECTTSCEE------
T ss_pred -------CCceeeecccccccee--cccccCCCccceEEEeeecceeeecccccc----ceeeEEEeccCCcce------
Confidence 2245555544332211 111111222334678999999987665432 345666654421000
Q ss_pred CCCCCcEEee--ecccceEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCC--CceEec--cCC--CCCceeEEEEecCC
Q 004766 290 DGLLPFVKLI--DGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPN--DWFEVI--PEA--ERDVLESATAVNLN 361 (732)
Q Consensus 290 ~~~~~~~~l~--~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~--~~~~l~--~~~--~~~~l~~~~~~~~~ 361 (732)
........ .+.......+++++..++..... .....++.++..... ....+. +.. .........+++++
T Consensus 165 --~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~ 241 (333)
T d1ri6a_ 165 --AQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNEL-NSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDG 241 (333)
T ss_dssp --EEEEEEEECSTTCCEEEEEECTTSSEEEEEETT-TTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTS
T ss_pred --eeeceeeeeecCCCccEEEEeccceeEEeeccc-cCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEeccc
Confidence 00000011 11111223577777766654433 223334444333222 011111 111 11223445666654
Q ss_pred -EEEEEEecCCeeEEEEEeCCCCceeeeccc-c-cceeeEeecccCCcEEEEEEecCCCCceEEEEECCCCCCceEEEEe
Q 004766 362 -QMIVSYLSDVKYVLQIRDLKNGSLLHQLPI-E-IGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTETPEMKIFRE 438 (732)
Q Consensus 362 -~l~~~~~~~g~~~l~~~d~~~g~~~~~l~~-~-~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~~~~~~~l~~ 438 (732)
.+++.....+...++..+.+ +........ + .+....++++|||+.|+++ .+...--.+|.+|.++|+ ++.+..
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~p~~~a~spDGk~l~va-~~~~~~v~v~~id~~tG~--l~~~~~ 317 (333)
T d1ri6a_ 242 RHLYACDRTASLITVFSVSED-GSVLSKEGFQPTETQPRGFNVDHSGKYLIAA-GQKSHHISVYEIVGEQGL--LHEKGR 317 (333)
T ss_dssp SEEEEEETTTTEEEEEEECTT-SCCEEEEEEEECSSSCCCEEECTTSSEEEEE-CTTTCEEEEEEEETTTTE--EEEEEE
T ss_pred CceeeecccCCeEEEEEEcCC-CCEEEEEEEeCCCCCeeEEEEeCCCCEEEEE-ECCCCeEEEEEEECCCCc--EEEEEe
Confidence 45555555544445444443 222122211 1 2334567889999987654 333333457778888884 544433
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=98.94 E-value=5.8e-07 Score=94.56 Aligned_cols=164 Identities=13% Similarity=0.080 Sum_probs=92.8
Q ss_pred EEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCcee--ccccccee----eeeEEEEeCCcEEEEEEecCCCCCCCC
Q 004766 133 ALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVE--ADALSWFK----FSSIAWTHDSKGFFYSRYPAPKEGKDM 206 (732)
Q Consensus 133 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~--~~~~~~~~----~~~~~WspDg~~l~y~~~~~~~~~~~~ 206 (732)
.+..++|||||++|+.+ +.+| .+++||+.+++.. .....+.. ..+++|||||++|+.+..
T Consensus 63 ~~~~v~fSpDG~~l~~~-s~dg----~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~--------- 128 (432)
T d1qksa2 63 AVHISRLSASGRYLFVI-GRDG----KVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAY--------- 128 (432)
T ss_dssp CEEEEEECTTSCEEEEE-ETTS----EEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEE---------
T ss_pred CeeEEEECCCCCEEEEE-cCCC----CEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcC---------
Confidence 36688999999999654 4333 7999999988632 11111111 134567789999887643
Q ss_pred CCCCcccCCcccEEEEEECCCCCCCCeEEEec--CC-----CCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCC
Q 004766 207 DAGTETDSNLYHEFYYHFLGTKQSEDILCWKD--PE-----HPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSAL 279 (732)
Q Consensus 207 ~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~--~~-----~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~ 279 (732)
.+..|.+|+..+++......... .. .......+.+||||+.+++.... ...+++++..+.
T Consensus 129 ---------~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~----~~~i~~~d~~~~ 195 (432)
T d1qksa2 129 ---------WPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKE----TGKILLVDYTDL 195 (432)
T ss_dssp ---------ETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETT----TTEEEEEETTCS
T ss_pred ---------CCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEcc----CCeEEEEEccCC
Confidence 23467888877654221111000 00 01123457889999998776543 246888887763
Q ss_pred CCCcccccccCCCCCcEEeeecccceEEEEEecCCeEEEEeCCCCCCceEEEEeCCCC
Q 004766 280 PEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEP 337 (732)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~ 337 (732)
.. .....+..+....-..++|||+.+++.+... ..+..+|.++.
T Consensus 196 ~~-----------~~~~~i~~g~~~~~~~~spdg~~~~va~~~~---~~v~v~d~~~~ 239 (432)
T d1qksa2 196 NN-----------LKTTEISAERFLHDGGLDGSHRYFITAANAR---NKLVVIDTKEG 239 (432)
T ss_dssp SE-----------EEEEEEECCSSEEEEEECTTSCEEEEEEGGG---TEEEEEETTTT
T ss_pred Cc-----------ceEEEEcccCccccceECCCCCEEEEecccc---ceEEEeecccc
Confidence 21 0111222222112235899998888766532 24556665543
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=98.93 E-value=6.6e-07 Score=91.63 Aligned_cols=289 Identities=10% Similarity=-0.071 Sum_probs=139.0
Q ss_pred CCCcEEeCCEEEEEEEcCCCCeeEEEEEeCCCCCceEEeCCCCcCCCCCEEEEeEEECCCCcEEEEEEecc-----CCce
Q 004766 83 YDAPFKRGNKYFYFHNTGLQPQSVLYVQDSLDAKAKVLLDPNTLSDDGTAALIKVSVSEDAKYLAYALSYS-----GSDW 157 (732)
Q Consensus 83 ~~~p~~~g~~~~~~~~~~~~~~~~l~~r~~~~~~~~~l~D~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~-----G~e~ 157 (732)
...+.++|.++|............+|+.+...++..--++... ...+.|||||++|++..... +...
T Consensus 25 ~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~--------~~~~a~SpDG~~l~va~~~~~~~~~~~~~ 96 (373)
T d2madh_ 25 DEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGF--------LPNPVAAHSGSEFALASTSFSRIAKGKRT 96 (373)
T ss_pred ccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCC--------CccEEEcCCCCEEEEEeecCCcccccccc
Confidence 3456678888766532222223458887654443221122111 12688999999999886533 2334
Q ss_pred EEEEEEECCCCceecccccc--------eeeeeEEEEeCCcEEEEEEecCCCCCCCCC--------------------CC
Q 004766 158 ATIKLMRIEDQIVEADALSW--------FKFSSIAWTHDSKGFFYSRYPAPKEGKDMD--------------------AG 209 (732)
Q Consensus 158 ~~i~v~dl~~g~~~~~~~~~--------~~~~~~~WspDg~~l~y~~~~~~~~~~~~~--------------------~~ 209 (732)
..|+|||+.+++.+...... .....+.|+|||+.+++...........+. .+
T Consensus 97 ~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g 176 (373)
T d2madh_ 97 DYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLSSPTCYHIHPGA 176 (373)
T ss_pred eEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEeccceeEEEecCC
Confidence 57999999999865321100 012468999999998876543211100000 00
Q ss_pred Cc--ccCCcccEEEEEECCCCCCCCeEEEe--cCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCccc
Q 004766 210 TE--TDSNLYHEFYYHFLGTKQSEDILCWK--DPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEG 285 (732)
Q Consensus 210 ~~--~~~~~~~~v~~~~lgt~~~~~~~v~~--~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~ 285 (732)
.. ........+.+++..+.......... ......+.....+++++..++... ...+++++..+.......
T Consensus 177 ~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~~~ 250 (373)
T d2madh_ 177 PSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVY------SGKILQADISAAGATNKA 250 (373)
T ss_pred CcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEEEecC------CceEEEEEcCCCeEEEEE
Confidence 00 00011123344444333211111000 001111222344555555543321 123445554432100000
Q ss_pred ccccCCCCCcEEee-ecccceEEEEEecCCeEEEEeCCC------CCCceEEEEeCCCCCCceEeccCCCCCceeEEEEe
Q 004766 286 FKKRDGLLPFVKLI-DGFDAQYEVIANDDTVFTFLTNKD------APKYKIIRVDLKEPNDWFEVIPEAERDVLESATAV 358 (732)
Q Consensus 286 ~~~~~~~~~~~~l~-~~~~~~~~~~s~dg~~l~~~s~~~------~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~ 358 (732)
.. +.......... .........+++++..+++....+ .....+..+|+.+++....+ +.. .....+.++
T Consensus 251 ~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~-~~~--~~~~~~a~s 326 (373)
T d2madh_ 251 PI-DALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQI-SLG--HDVDAISVA 326 (373)
T ss_pred ee-ccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEe-cCC--CCeeEEEEC
Confidence 00 00000000000 001111234788888877655432 12346888898887633333 332 346678888
Q ss_pred cCC-EE-EEEEecCCeeEEEEEeCCCCceeeeccc
Q 004766 359 NLN-QM-IVSYLSDVKYVLQIRDLKNGSLLHQLPI 391 (732)
Q Consensus 359 ~~~-~l-~~~~~~~g~~~l~~~d~~~g~~~~~l~~ 391 (732)
+|+ .+ |+....+ ..|++||+.+|+.++.|..
T Consensus 327 pDG~~~l~vt~~~d--~~v~v~D~~tg~~~~~~~~ 359 (373)
T d2madh_ 327 QDGGPDLYALSAGT--EVLHIYDAGAGDQDQSTVE 359 (373)
T ss_pred CCCCEEEEEEeCCC--CeEEEEECCCCCEEEEECC
Confidence 764 44 4444444 5799999999998777764
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.91 E-value=4.3e-08 Score=101.16 Aligned_cols=217 Identities=8% Similarity=-0.017 Sum_probs=123.3
Q ss_pred CEEEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceec---ccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCC
Q 004766 131 TAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEA---DALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMD 207 (732)
Q Consensus 131 ~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~---~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~ 207 (732)
...+..+.|||||++|+-.. . ..+|+|||+.++.... ..........+.|+||++.|+....+.
T Consensus 51 ~~~V~~l~fsp~~~~l~s~s-~----D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~-------- 117 (371)
T d1k8kc_ 51 NGQVTGVDWAPDSNRIVTCG-T----DRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSR-------- 117 (371)
T ss_dssp SSCEEEEEEETTTTEEEEEE-T----TSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTS--------
T ss_pred CCCEEEEEECCCCCEEEEEE-C----CCeEEEEeecccccccccccccccccccccccccccccceeecccC--------
Confidence 34577899999999987553 1 2479999998876322 111122357899999999988875332
Q ss_pred CCCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCccc-c
Q 004766 208 AGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEG-F 286 (732)
Q Consensus 208 ~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~-~ 286 (732)
.+.++++...................+..++|+|||++|+..+.++. +.++++......... .
T Consensus 118 -----------~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~-----v~v~~~~~~~~~~~~~~ 181 (371)
T d1k8kc_ 118 -----------VISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFK-----CRIFSAYIKEVEERPAP 181 (371)
T ss_dssp -----------SEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSC-----EEEEECCCTTTSCCCCC
T ss_pred -----------cceeeeeecccccccccccccccccccccccccccccceeccccCcE-----EEEEeeccCcccccccc
Confidence 24444443332221222222222334568999999999876654332 556665442211000 0
Q ss_pred cccCCCCCc-EEeee--cccce-E-EEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecCC
Q 004766 287 KKRDGLLPF-VKLID--GFDAQ-Y-EVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLN 361 (732)
Q Consensus 287 ~~~~~~~~~-~~l~~--~~~~~-~-~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~ 361 (732)
.......+. ..+.. ..... . ..|+|+|+.|+..+. +..|..+|+.++.....+..+. ..+..+.+++++
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~----d~~i~iwd~~~~~~~~~~~~~~--~~v~s~~fs~d~ 255 (371)
T d1k8kc_ 182 TPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSH----DSTVCLADADKKMAVATLASET--LPLLAVTFITES 255 (371)
T ss_dssp BTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEET----TTEEEEEEGGGTTEEEEEECSS--CCEEEEEEEETT
T ss_pred ccccccccceeeeeeccCccCcEEEEEeeccccccccccc----CCcceEEeeecccceeeeeccc--ccceeeeecCCC
Confidence 000000000 11111 11111 1 248999998876654 3468889988776455554443 567889998877
Q ss_pred EEEEEEecCCeeEEEEEeCCCC
Q 004766 362 QMIVSYLSDVKYVLQIRDLKNG 383 (732)
Q Consensus 362 ~l~~~~~~~g~~~l~~~d~~~g 383 (732)
.+++... ++...++.++...+
T Consensus 256 ~~la~g~-d~~~~~~~~~~~~~ 276 (371)
T d1k8kc_ 256 SLVAAGH-DCFPVLFTYDSAAG 276 (371)
T ss_dssp EEEEEET-TSSCEEEEEETTTT
T ss_pred CEEEEEc-CCceEEEEeeCCCc
Confidence 7766544 55567777776533
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.91 E-value=4.9e-08 Score=98.77 Aligned_cols=212 Identities=11% Similarity=0.069 Sum_probs=121.2
Q ss_pred EEEEeEEECC--CCcEEEEEEeccCCceEEEEEEECCCCceeccc---------ccceeeeeEEEEeCCcEEEEEEecCC
Q 004766 132 AALIKVSVSE--DAKYLAYALSYSGSDWATIKLMRIEDQIVEADA---------LSWFKFSSIAWTHDSKGFFYSRYPAP 200 (732)
Q Consensus 132 ~~~~~~~~SP--DG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~---------~~~~~~~~~~WspDg~~l~y~~~~~~ 200 (732)
..+..++||| ||++||-. +...+|+|||+..++..... ........++|+|||+.|+.+....
T Consensus 64 ~~v~~v~fsP~~~g~~lasg-----s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~- 137 (325)
T d1pgua1 64 SVVTTVKFSPIKGSQYLCSG-----DESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGR- 137 (325)
T ss_dssp SCEEEEEECSSTTCCEEEEE-----ETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCS-
T ss_pred CCEEEEEEeeCCCCCEEEEE-----eCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeeccc-
Confidence 3477889998 56777633 22347999998766532110 0111246799999999998876322
Q ss_pred CCCCCCCCCCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCC
Q 004766 201 KEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALP 280 (732)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~ 280 (732)
...+.+++..++. .+.....+...+..+.|+|++.++++...... .+.+++.....
T Consensus 138 ----------------~~~~~~~~~~~~~----~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~----~v~~~d~~~~~ 193 (325)
T d1pgua1 138 ----------------DNFGVFISWDSGN----SLGEVSGHSQRINACHLKQSRPMRSMTVGDDG----SVVFYQGPPFK 193 (325)
T ss_dssp ----------------SCSEEEEETTTCC----EEEECCSCSSCEEEEEECSSSSCEEEEEETTT----EEEEEETTTBE
T ss_pred ----------------cceEEEEeecccc----cceeeeecccccccccccccccceEEEeeccc----ccccccccccc
Confidence 2235555655442 23332233445678999999998777664432 36667765421
Q ss_pred CCcccccccCCCCCcEEeee--cccc-eE-EEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCC--ceeE
Q 004766 281 EGLEGFKKRDGLLPFVKLID--GFDA-QY-EVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERD--VLES 354 (732)
Q Consensus 281 ~~~~~~~~~~~~~~~~~l~~--~~~~-~~-~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~--~l~~ 354 (732)
. ...... .... .. ..|+||+..+++....+ ..|..+|+.+++....+-.+.... .+-.
T Consensus 194 ~-------------~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d---~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s 257 (325)
T d1pgua1 194 F-------------SASDRTHHKQGSFVRDVEFSPDSGEFVITVGSD---RKISCFDGKSGEFLKYIEDDQEPVQGGIFA 257 (325)
T ss_dssp E-------------EEEECSSSCTTCCEEEEEECSTTCCEEEEEETT---CCEEEEETTTCCEEEECCBTTBCCCSCEEE
T ss_pred c-------------ceecccccCCCCccEEeeeccccceeccccccc---cceeeeeeccccccccccccccccccceee
Confidence 0 111111 1111 11 24889866665544433 358888988876444443333111 1223
Q ss_pred EEEecCCEEEEEEecCCeeEEEEEeCCCCceeeecccc
Q 004766 355 ATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIE 392 (732)
Q Consensus 355 ~~~~~~~~l~~~~~~~g~~~l~~~d~~~g~~~~~l~~~ 392 (732)
+.+.+ +..+++...|+ .|++||+.+++.++.+...
T Consensus 258 ~~~~d-g~~l~s~s~D~--~i~iwd~~~~~~~~~~~~~ 292 (325)
T d1pgua1 258 LSWLD-SQKFATVGADA--TIRVWDVTTSKCVQKWTLD 292 (325)
T ss_dssp EEESS-SSEEEEEETTS--EEEEEETTTTEEEEEEECC
T ss_pred eeccC-CCEEEEEeCCC--eEEEEECCCCCEEEEEEec
Confidence 33333 55666777775 6889999988876666543
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.90 E-value=1.3e-07 Score=94.99 Aligned_cols=229 Identities=13% Similarity=0.020 Sum_probs=125.0
Q ss_pred EEEEEEECCCCceeccc---ccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCCcccEEEEEECCCCCCCCeE
Q 004766 158 ATIKLMRIEDQIVEADA---LSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDIL 234 (732)
Q Consensus 158 ~~i~v~dl~~g~~~~~~---~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~ 234 (732)
.+|+|||+++++.+... ..+....++++||||+.++.+. .....|+.|++.+++...
T Consensus 11 ~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~------------------~~~~~v~v~D~~t~~~~~-- 70 (337)
T d1pbyb_ 11 DKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATV------------------NKSESLVKIDLVTGETLG-- 70 (337)
T ss_dssp TEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEE------------------TTTTEEEEEETTTCCEEE--
T ss_pred CEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEE------------------CCCCeEEEEECCCCcEEE--
Confidence 38999999999865321 1122246899999999887763 233479999998764321
Q ss_pred EEecCCCC---eeEEEeEEecCCcEEEEEEecCC-------cceEEEEEEeCCCCCCCcccccccCCCCCcEEeeecccc
Q 004766 235 CWKDPEHP---KYIFSGHVTEDGQYLVMCIEENC-------DPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDA 304 (732)
Q Consensus 235 v~~~~~~~---~~~~~~~~SpDg~~l~~~~~~~~-------~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 304 (732)
-....... .....+++||||++++....... .....+.++|..++. ....+......
T Consensus 71 ~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-------------~~~~~~~~~~~ 137 (337)
T d1pbyb_ 71 RIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLS-------------RRKAFEAPRQI 137 (337)
T ss_dssp EEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTE-------------EEEEEECCSSC
T ss_pred EEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCe-------------EEEeccccCCc
Confidence 11111111 11136789999999987764321 013457777777632 01122112222
Q ss_pred eEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCC---------------------------------------------
Q 004766 305 QYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPND--------------------------------------------- 339 (732)
Q Consensus 305 ~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~--------------------------------------------- 339 (732)
....+++||+.++..... +..+|..++..
T Consensus 138 ~~~~~s~dg~~l~~~~~~------~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (337)
T d1pbyb_ 138 TMLAWARDGSKLYGLGRD------LHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDP 211 (337)
T ss_dssp CCEEECTTSSCEEEESSS------EEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCT
T ss_pred eEEEEcCCCCEEEEEcCC------cceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccce
Confidence 223578888877764321 11222221100
Q ss_pred -------------------c--eEeccCCCCCceeEEEEecCCEEEEEEecCCeeEEEEEeCCCCceeeecccccceeeE
Q 004766 340 -------------------W--FEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNA 398 (732)
Q Consensus 340 -------------------~--~~l~~~~~~~~l~~~~~~~~~~l~~~~~~~g~~~l~~~d~~~g~~~~~l~~~~g~v~~ 398 (732)
. ....+. ........+.+++..++.. ...|.+||+.+++.+..+..+ ..+..
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~----~~~i~v~d~~~~~~~~~~~~~-~~~~~ 284 (337)
T d1pbyb_ 212 ADPTAYRTGLLTMDLETGEMAMREVRIM--DVFYFSTAVNPAKTRAFGA----YNVLESFDLEKNASIKRVPLP-HSYYS 284 (337)
T ss_dssp TSGGGEEEEEEEEETTTCCEEEEEEEEC--SSCEEEEEECTTSSEEEEE----ESEEEEEETTTTEEEEEEECS-SCCCE
T ss_pred eeecccCccEEEEEcCCCcEEEEEecCC--CcceEEEEecccceEEEEc----cccEEEEECCCCcEEEEEcCC-CCEEE
Confidence 0 000000 0111112222322222221 136889999988876777644 34557
Q ss_pred eecccCCcEEEEEEecCCCCceEEEEECCCCCCceEEEE
Q 004766 399 ISARREDSVVFISFTSFLIPGIVYQCNLKTETPEMKIFR 437 (732)
Q Consensus 399 ~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~~~~~~~l~ 437 (732)
+.+++||+.+++.. .-.++..||..+.+ ....++
T Consensus 285 ~~~s~dG~~l~v~~----~~~~i~v~D~~t~~-~v~~i~ 318 (337)
T d1pbyb_ 285 VNVSTDGSTVWLGG----ALGDLAAYDAETLE-KKGQVD 318 (337)
T ss_dssp EEECTTSCEEEEES----BSSEEEEEETTTCC-EEEEEE
T ss_pred EEECCCCCEEEEEe----CCCcEEEEECCCCc-EEEEEE
Confidence 88999999887642 23679999998876 344444
|
| >d1ispa_ c.69.1.18 (A:) Lipase A {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Bacterial lipase domain: Lipase A species: Bacillus subtilis [TaxId: 1423]
Probab=98.89 E-value=4.5e-09 Score=96.51 Aligned_cols=169 Identities=12% Similarity=-0.067 Sum_probs=103.2
Q ss_pred ccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCccHHHHHHHHHHHHHHcCCCCC
Q 004766 481 HPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQS 560 (732)
Q Consensus 481 ~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~ 560 (732)
.| ||++||..+... .|. .+...|.++||.++.++.+|.+.....- ....+++...++.+.++ ...
T Consensus 3 ~P-Vv~vHG~~~~~~--~~~-~l~~~l~~~g~~~~~~~~~~~~~~~~~~---------~~~~~~l~~~i~~~~~~--~~~ 67 (179)
T d1ispa_ 3 NP-VVMVHGIGGASF--NFA-GIKSYLVSQGWSRDKLYAVDFWDKTGTN---------YNNGPVLSRFVQKVLDE--TGA 67 (179)
T ss_dssp CC-EEEECCTTCCGG--GGH-HHHHHHHHTTCCGGGEEECCCSCTTCCH---------HHHHHHHHHHHHHHHHH--HCC
T ss_pred CC-EEEECCCCCCHH--HHH-HHHHHHHHcCCeEEEEecCCcccccccc---------chhhhhHHHHHHHHHHh--cCC
Confidence 35 566899876532 343 3456676699999988888865432111 12345566666666654 234
Q ss_pred CcEEEEecChhHHHHHHHHhhC--CCeeeEEEEcCCcccccccccCCCCCccccccCCCCCHHHHHHHHhcCcccCCCCC
Q 004766 561 RKLCIEGGSNGGLLVGACINQR--PDLFGCALAHVGVMDMLRYHKFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRP 638 (732)
Q Consensus 561 ~~i~i~G~S~GG~l~~~~~~~~--p~~f~a~v~~~p~~d~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~sp~~~~~~~ 638 (732)
+++.++||||||.++..++.++ |++.+.+|+..+....... ... | ....
T Consensus 68 ~~v~lvGHSmGG~va~~~~~~~~~~~~V~~~V~l~~p~~g~~~----------~~l--~----------------~~~~- 118 (179)
T d1ispa_ 68 KKVDIVAHSMGGANTLYYIKNLDGGNKVANVVTLGGANRLTTG----------KAL--P----------------GTDP- 118 (179)
T ss_dssp SCEEEEEETHHHHHHHHHHHHSSGGGTEEEEEEESCCGGGTCS----------BCC--C----------------CSCT-
T ss_pred ceEEEEeecCcCHHHHHHHHHcCCchhhCEEEEECCCCCCchh----------hhc--C----------------Cccc-
Confidence 6899999999999999988775 6788888876553211000 000 0 0111
Q ss_pred CCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeCCCCCCCCCchHHHHHHHHHH
Q 004766 639 WEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADR 718 (732)
Q Consensus 639 ~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~ 718 (732)
....|++.++|..|..|++..+ ++. +. .....++.+|....... +..+.+
T Consensus 119 --------~~~~~~~~i~~~~D~~v~~~~~-----~l~------------~~--~~~~~~~~~H~~l~~~~---~v~~~i 168 (179)
T d1ispa_ 119 --------NQKILYTSIYSSADMIVMNYLS-----RLD------------GA--RNVQIHGVGHIGLLYSS---QVNSLI 168 (179)
T ss_dssp --------TCCCEEEEEEETTCSSSCHHHH-----CCB------------TS--EEEEESSCCTGGGGGCH---HHHHHH
T ss_pred --------ccCceEEEEEecCCcccCchhh-----cCC------------Cc--eEEEECCCCchhhccCH---HHHHHH
Confidence 1457999999999999998653 121 22 44566899996432211 334445
Q ss_pred HHHHH
Q 004766 719 YGFMA 723 (732)
Q Consensus 719 ~~fl~ 723 (732)
.+||.
T Consensus 169 ~~~L~ 173 (179)
T d1ispa_ 169 KEGLN 173 (179)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 55553
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=98.89 E-value=5.7e-08 Score=102.55 Aligned_cols=199 Identities=12% Similarity=-0.019 Sum_probs=113.6
Q ss_pred EEEEEECCCCceecccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCCcccEEEEEECCCCCCCCeEEEec
Q 004766 159 TIKLMRIEDQIVEADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKD 238 (732)
Q Consensus 159 ~i~v~dl~~g~~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~ 238 (732)
+|.|||+++++.+.....+....+++|||||++||.+.. ...+.+|++.++... .+.+.
T Consensus 43 ~v~v~D~~t~~v~~~~~~g~~~~~v~fSpDG~~l~~~s~-------------------dg~v~~~d~~t~~~~--~~~~i 101 (432)
T d1qksa2 43 QIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGR-------------------DGKVNMIDLWMKEPT--TVAEI 101 (432)
T ss_dssp EEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEET-------------------TSEEEEEETTSSSCC--EEEEE
T ss_pred EEEEEECCCCcEEEEEeCCCCeeEEEECCCCCEEEEEcC-------------------CCCEEEEEeeCCCce--EEEEE
Confidence 799999999997653322323578999999999976542 236889998876533 22221
Q ss_pred ---CCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCCCCcEEeeecccceEEEEEecCCe
Q 004766 239 ---PEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTV 315 (732)
Q Consensus 239 ---~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dg~~ 315 (732)
........++.+||||++|+...... ..+.++|.+++.... .+......................++|+|..
T Consensus 102 ~~~~~~~~~~~s~~~SpDG~~l~vs~~~~----~~v~i~d~~t~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~ 176 (432)
T d1qksa2 102 KIGSEARSIETSKMEGWEDKYAIAGAYWP----PQYVIMDGETLEPKK-IQSTRGMTYDEQEYHPEPRVAAILASHYRPE 176 (432)
T ss_dssp ECCSEEEEEEECCSTTCTTTEEEEEEEET----TEEEEEETTTCCEEE-EEECCEECTTTCCEESCCCEEEEEECSSSSE
T ss_pred ecCCCCCCeEEecccCCCCCEEEEEcCCC----CeEEEEeCcccccee-eeccCCccccceeccCCCceeEEEECCCCCE
Confidence 11123445677899999997765433 347888988753110 0000000000000000111112247888888
Q ss_pred EEEEeCCCCCCceEEEEeCCCCCCce-EeccCCCCCceeEEEEecCCEEEEEEecCCeeEEEEEeCCCCceeeec
Q 004766 316 FTFLTNKDAPKYKIIRVDLKEPNDWF-EVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQL 389 (732)
Q Consensus 316 l~~~s~~~~~~~~l~~~d~~~~~~~~-~l~~~~~~~~l~~~~~~~~~~l~~~~~~~g~~~l~~~d~~~g~~~~~l 389 (732)
+++.... ...+..++..+....+ .-++. ...+.++.++++++.++....++ ..+.+++.++++....+
T Consensus 177 ~~vs~~~---~~~i~~~d~~~~~~~~~~~i~~--g~~~~~~~~spdg~~~~va~~~~-~~v~v~d~~~~~~~~~~ 245 (432)
T d1qksa2 177 FIVNVKE---TGKILLVDYTDLNNLKTTEISA--ERFLHDGGLDGSHRYFITAANAR-NKLVVIDTKEGKLVAIE 245 (432)
T ss_dssp EEEEETT---TTEEEEEETTCSSEEEEEEEEC--CSSEEEEEECTTSCEEEEEEGGG-TEEEEEETTTTEEEEEE
T ss_pred EEEEEcc---CCeEEEEEccCCCcceEEEEcc--cCccccceECCCCCEEEEecccc-ceEEEeecccceEEEEe
Confidence 7765543 3478888887765211 11232 24567888988755444444333 47888898866654444
|
| >d1llfa_ c.69.1.17 (A:) Type-B carboxylesterase/lipase {Candida cylindracea, cholesterol esterase [TaxId: 44322]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Type-B carboxylesterase/lipase species: Candida cylindracea, cholesterol esterase [TaxId: 44322]
Probab=98.86 E-value=5.7e-10 Score=121.77 Aligned_cols=220 Identities=16% Similarity=0.147 Sum_probs=127.3
Q ss_pred EEEEEEEcCCCCCCCCccEEEEEcCCCCc-cCCCCcChhH---HHHHHhcCcEEEEEcccCCC-CCc--hhHHhcccccC
Q 004766 465 IPMFIVSKKNIKLDGSHPCLLYGYGGFNI-SVTPSFSVSR---TILMRHLGAVFCIANIRGGG-EYG--EEWHKGGALAK 537 (732)
Q Consensus 465 i~~~~~~p~~~~~~~~~P~vv~~hG~~~~-~~~~~~~~~~---~~~l~~~G~~v~~~~~rG~g-~~g--~~~~~~~~~~~ 537 (732)
+.+-|+.|+....+.+.|+|||+|||... .....|.+.. ..++..++++||.+|||-|- ||- ..-.. ...
T Consensus 98 L~LnI~~P~~~~~~~~~PVlv~ihGG~f~~g~~~~~~~~~~~~~~~~~~~~vIvVt~nYRLg~~GFl~~~~~~~---~~~ 174 (534)
T d1llfa_ 98 LTINVVRPPGTKAGANLPVMLWIFGGGFEIGSPTIFPPAQMVTKSVLMGKPIIHVAVNYRVASWGFLAGDDIKA---EGS 174 (534)
T ss_dssp CEEEEEECTTCCTTCCEEEEEEECCSTTTSCCGGGSCCHHHHHHHHHTTCCCEEEEECCCCHHHHHCCSHHHHH---HTC
T ss_pred CEEEEEECCCCCCCCCCeEEEEECCCccccCCCCCCCchhccchhhhccCCeEEEEeecCCCcccccCCccccc---ccc
Confidence 56777888776667889999999998432 2222344332 23344589999999999642 111 11111 112
Q ss_pred CccHHHHHHHHHHHHHHc---CCCCCCcEEEEecChhHHHHHHHHhh-----CC---CeeeEEEEcCCcccccccccCCC
Q 004766 538 KQNCFDDFISASEYLISA---GYTQSRKLCIEGGSNGGLLVGACINQ-----RP---DLFGCALAHVGVMDMLRYHKFTI 606 (732)
Q Consensus 538 ~~~~~~D~~~~~~~l~~~---~~~d~~~i~i~G~S~GG~l~~~~~~~-----~p---~~f~a~v~~~p~~d~~~~~~~~~ 606 (732)
+-..+.|++.|++|++++ ---||+||.|+|+|+||..+.+.+.. .| .+|+.+|+.+|..-.........
T Consensus 175 gN~Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SaGa~~v~~~l~~~~~~~sp~s~gLF~raI~qSGs~~~~~~~~~~~ 254 (534)
T d1llfa_ 175 GNAGLKDQRLGMQWVADNIAGFGGDPSKVTIFGESAGSMSVLCHLIWNDGDNTYKGKPLFRAGIMQSGAMVPSDPVDGTY 254 (534)
T ss_dssp TTHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHGGGGCCEETTEESCSEEEEESCCSCCCCCTTSHH
T ss_pred cccchhHHHHHHHHHHhhhhhhccCCcceeeeeecchHHHHHHHHhccccccccchhhhhhhhhhccCccccCcccchhh
Confidence 334789999999999987 22599999999999999988877641 12 37999999997431111111000
Q ss_pred C----CccccccCCCCCHHHHHHHHhcCcccCCCCCC---CCC--CCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHH
Q 004766 607 G----HAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPW---EQN--PDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQY 677 (732)
Q Consensus 607 ~----~~~~~~~g~p~~~~~~~~~~~~sp~~~~~~~~---~~~--~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~ 677 (732)
. .......|++...+..+.|++.++-.-++... ..+ ........|+ -|..+-+.++.++.+.=+
T Consensus 255 ~~~~~~~la~~lGc~~~~~~l~cLR~~~a~~L~~a~~~~~~~~~~~~~~~~f~Pv------iDG~~lp~~p~~~l~~g~- 327 (534)
T d1llfa_ 255 GNEIYDLFVSSAGCGSASDKLACLRSASSDTLLDATNNTPGFLAYSSLRLSYLPR------PDGKNITDDMYKLVRDGK- 327 (534)
T ss_dssp HHHHHHHHHHHTTCTTCSSHHHHHHHSCHHHHHHHHHTSCCTTSTTTTSCSSCCC------CCSSSSCSCHHHHHHTTC-
T ss_pred hhhhhhHHHhhhcccCcccccccccCCCHHHHHHHHHhcccccccccccceeecc------cccccCCCChhhHhhcCC-
Confidence 0 01123457665555567777766532211000 000 0000011232 355566677665543222
Q ss_pred hhcCCCCCCCCCCCEEEEEeCCCCCC
Q 004766 678 VLCTSLENSPQTNPIIGRIERKAGHG 703 (732)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~gH~ 703 (732)
..++|+.+-...++|..
T Consensus 328 ---------~~~vPlliG~~~dEg~~ 344 (534)
T d1llfa_ 328 ---------YASVPVIIGDQNDEGTI 344 (534)
T ss_dssp ---------SCCCCEEEEEETBTTHH
T ss_pred ---------cccceeEEeeecCccce
Confidence 22688888888888743
|
| >d2pl5a1 c.69.1.40 (A:5-366) Homoserine O-acetyltransferase {Leptospira interrogans [TaxId: 173]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: O-acetyltransferase domain: Homoserine O-acetyltransferase species: Leptospira interrogans [TaxId: 173]
Probab=98.86 E-value=1.1e-07 Score=96.06 Aligned_cols=230 Identities=13% Similarity=0.113 Sum_probs=130.3
Q ss_pred CCccEEEEEcCCCCccCC----------CCcChhH---HHHHHhcCcEEEEEcccCCCCC--chhHHhcc-----cccCC
Q 004766 479 GSHPCLLYGYGGFNISVT----------PSFSVSR---TILMRHLGAVFCIANIRGGGEY--GEEWHKGG-----ALAKK 538 (732)
Q Consensus 479 ~~~P~vv~~hG~~~~~~~----------~~~~~~~---~~~l~~~G~~v~~~~~rG~g~~--g~~~~~~~-----~~~~~ 538 (732)
.+-++||+.|+--|.+.. +.|...+ -..++..-|-|+++|.-|+|.. |..-.... .....
T Consensus 40 ~~~NaVlv~h~~tG~~~~~g~~~~~~~~~gww~~liG~g~~lDt~~yfVI~~n~lG~~~~ss~~~s~~p~~~~~yg~~fP 119 (362)
T d2pl5a1 40 SKNNAILICHALSGDAHAAGYHSGSDKKPGWWDDYIGPGKSFDTNQYFIICSNVIGGCKGSSGPLSIHPETSTPYGSRFP 119 (362)
T ss_dssp TSCCEEEEECCSSCCSCCSSBSSTTCSSCCTTTTTEETTSSEETTTCEEEEECCTTCSSSSSSTTSBCTTTSSBCGGGSC
T ss_pred CCCCEEEECCCCCcchhccccCCccCCCcchHHHhcCCCCccCccccEEEeeccccCcccccCccccccccccccCcCCc
Confidence 345899999997665422 2232111 2335667799999999986532 21110000 01233
Q ss_pred ccHHHHHHHHHHHHHHc-CCCCCCcEE-EEecChhHHHHHHHHhhCCCeeeEEEEcCCccccc-------ccc--cCCCC
Q 004766 539 QNCFDDFISASEYLISA-GYTQSRKLC-IEGGSNGGLLVGACINQRPDLFGCALAHVGVMDML-------RYH--KFTIG 607 (732)
Q Consensus 539 ~~~~~D~~~~~~~l~~~-~~~d~~~i~-i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~~d~~-------~~~--~~~~~ 607 (732)
.-++.|++++-.-|.+. |. +|+. ++|+||||+.+...+.++|+..+.+|+.++-.-.. ... .....
T Consensus 120 ~~t~~D~v~~~~~ll~~LGI---~~l~~viG~SmGGmqAl~wA~~yPd~v~~~v~ia~sa~~s~~~~~~~~~~~~aI~~D 196 (362)
T d2pl5a1 120 FVSIQDMVKAQKLLVESLGI---EKLFCVAGGSMGGMQALEWSIAYPNSLSNCIVMASTAEHSAMQIAFNEVGRQAILSD 196 (362)
T ss_dssp CCCHHHHHHHHHHHHHHTTC---SSEEEEEEETHHHHHHHHHHHHSTTSEEEEEEESCCSBCCHHHHHHHHHHHHHHHTS
T ss_pred cchhHHHHHHHHHHHHHhCc---CeeEEEeehhHHHHHHHHHHHhCchHhhhhcccccccccCHHHHHHHHHHHHHHhcC
Confidence 45789988887777765 33 3554 88999999999999999999999998776522110 000 00000
Q ss_pred Ccc------------------------------------------------------ccccCC----CCCHHHHHHHHhc
Q 004766 608 HAW------------------------------------------------------VSDFGC----SEEEEEFYWLIKY 629 (732)
Q Consensus 608 ~~~------------------------------------------------------~~~~g~----p~~~~~~~~~~~~ 629 (732)
+.| ....|. ..|+..+-++.+.
T Consensus 197 p~~~~G~Y~~~~P~~GL~~AR~~~~~~y~s~~~~~~~f~~~~~~~~~~~~~~~ve~yl~~~g~k~~~rfDan~yl~l~~a 276 (362)
T d2pl5a1 197 PNWKNGLYDENSPRKGLALARMVGHITYLSDDKMREKFGRNPPRGNILSTDFAVGSYLIYQGESFVDRFDANSYIYVTKA 276 (362)
T ss_dssp TTCGGGTCSSSCCHHHHHHHHHHHHHTTBCHHHHHHHHTTSCCSSCTTTTTTTSCGGGGSTTCCSSSCCCHHHHHHHHHH
T ss_pred CccccCCcccCChhHHHHHHHHHHHHHHcCchhhhhhhccccccccccchhHHHHHHHHHHHHHHHhcCCHHHHHHHHhh
Confidence 001 001111 1233333222221
Q ss_pred CcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEe-CCCCCCCCCch
Q 004766 630 SPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIE-RKAGHGVGLPT 708 (732)
Q Consensus 630 sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~gH~~~~~~ 708 (732)
.-.+.+.+.-+..+....++.|+|++....|-..|+++.+.+++.|..+ +..+.+++. ...||...--.
T Consensus 277 ~~~~Di~~~~~l~~aL~~I~AkvLvi~~~sD~lFpp~~~~~~a~~l~~a----------~~~v~~~eI~S~~GHdaFL~e 346 (362)
T d2pl5a1 277 LDHYSLGKGKELTAALSNATCRFLVVSYSSDWLYPPAQSREIVKSLEAA----------DKRVFYVELQSGEGHDSFLLK 346 (362)
T ss_dssp HHHCBCCSHHHHHHHHTTCCSEEEEEEETTCCSSCHHHHHHHHHHHHHT----------TCCEEEEEECCCBSSGGGGSC
T ss_pred hhcccccccccHHHHHhhCCCCEEEEEeCcccCcCHHHHHHHHHHHHhC----------CCCeEEEEeCCCCCcchhccC
Confidence 1111221100000001138899999999999999999999999999988 888877755 45788532111
Q ss_pred HHHHHHHHHHHHHHH
Q 004766 709 QKMIDEAADRYGFMA 723 (732)
Q Consensus 709 ~~~~~~~~~~~~fl~ 723 (732)
.. +....+-+||.
T Consensus 347 ~~--~~~~~I~~FL~ 359 (362)
T d2pl5a1 347 NP--KQIEILKGFLE 359 (362)
T ss_dssp CH--HHHHHHHHHHH
T ss_pred HH--HHHHHHHHHHc
Confidence 11 23334556664
|
| >d1ukca_ c.69.1.17 (A:) Esterase EstA {Aspergillus niger [TaxId: 5061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Esterase EstA species: Aspergillus niger [TaxId: 5061]
Probab=98.84 E-value=2.4e-09 Score=116.26 Aligned_cols=228 Identities=15% Similarity=0.107 Sum_probs=127.6
Q ss_pred EEEEEEEcCCCCCCCCccEEEEEcCCC-CccCCCCcChhHHHHHHhcCcEEEEEcccCCC-CCc--hhHHhcccccCCcc
Q 004766 465 IPMFIVSKKNIKLDGSHPCLLYGYGGF-NISVTPSFSVSRTILMRHLGAVFCIANIRGGG-EYG--EEWHKGGALAKKQN 540 (732)
Q Consensus 465 i~~~~~~p~~~~~~~~~P~vv~~hG~~-~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g-~~g--~~~~~~~~~~~~~~ 540 (732)
+..-|+.|+....+++.|++|++|||. .......+......+..+.+.+||.+|||-|- ||= ..-... ..+-.
T Consensus 81 L~LnI~~P~~~~~~~~~PV~v~ihGG~~~~G~~~~~~~~~~~~~~~~~vVvVt~nYRlg~~GFl~~~~~~~~---~~~N~ 157 (517)
T d1ukca_ 81 LFINVFKPSTATSQSKLPVWLFIQGGGYAENSNANYNGTQVIQASDDVIVFVTFNYRVGALGFLASEKVRQN---GDLNA 157 (517)
T ss_dssp CEEEEEEETTCCTTCCEEEEEEECCSTTTSCCSCSCCCHHHHHHTTSCCEEEEECCCCHHHHHCCCHHHHHS---SCTTH
T ss_pred CEEEEEeCCCCCCCCCceEEEEEcCCccccCCCccccchhhhhhhccccceEEEEecccceeecCccccccc---cccch
Confidence 556667787654557789999999983 22222334443333344467899999999542 110 000111 11234
Q ss_pred HHHHHHHHHHHHHHc---CCCCCCcEEEEecChhHHHHHHHHhh----CCCeeeEEEEcCCcccccccccCCC--CCccc
Q 004766 541 CFDDFISASEYLISA---GYTQSRKLCIEGGSNGGLLVGACINQ----RPDLFGCALAHVGVMDMLRYHKFTI--GHAWV 611 (732)
Q Consensus 541 ~~~D~~~~~~~l~~~---~~~d~~~i~i~G~S~GG~l~~~~~~~----~p~~f~a~v~~~p~~d~~~~~~~~~--~~~~~ 611 (732)
.+.|++.|++|++++ ---||++|.|+|+|+||..+...+.. ...+|..+|+++|............ .....
T Consensus 158 Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~l~s~~~~~~gLF~raI~qSg~~~~~~~~~~~~~~~~~~a 237 (517)
T d1ukca_ 158 GLLDQRKALRWVKQYIEQFGGDPDHIVIHGVSAGAGSVAYHLSAYGGKDEGLFIGAIVESSFWPTQRTVSEMEFQFERFV 237 (517)
T ss_dssp HHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHTGGGTCCCSSCSEEEEESCCCCCCCCSGGGHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhhcCCcccccccccccchhhHHHHHhccccccccccceeeecccccccccchhhHHHHHHHHH
Confidence 689999999999886 23599999999999999999876653 2249999999998653321111000 00011
Q ss_pred cccCCCCCHHHHHHHHhcCcccCCCCCCC-CCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhcCCCCCCCCCC
Q 004766 612 SDFGCSEEEEEFYWLIKYSPLHNVRRPWE-QNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTN 690 (732)
Q Consensus 612 ~~~g~p~~~~~~~~~~~~sp~~~~~~~~~-~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~ 690 (732)
...|+....+..+.|++.+.-.-+..... ..........+.+...-.-|..+-+.++.+..+.=+ ...+
T Consensus 238 ~~lg~~~~~~~l~cLr~~~~~~L~~a~~~~~~~~~~~~~~~~~~~~pv~Dg~~lp~~p~~~~~~g~----------~~~v 307 (517)
T d1ukca_ 238 NDTGCSSARDSLECLREQDIATIQKGNTGSPFPGGSSSPLPDWYFLPVTDGSLVPDELYNAFDAGN----------FIKV 307 (517)
T ss_dssp HHTTCTTCSSHHHHHHHSCHHHHHHHSSCCCCTTCCSSSCCSCCSCCCCCSSSSCSCHHHHHHHTC----------SCCC
T ss_pred hhhcccchhhhHhhhccCCHHHHHHhhhccccccccccccccccccceecccccccChHHHhhcCC----------cccc
Confidence 33465544445666766554211110000 000000000011112223455566666655543322 2278
Q ss_pred CEEEEEeCCCCCCCC
Q 004766 691 PIIGRIERKAGHGVG 705 (732)
Q Consensus 691 ~~~~~~~~~~gH~~~ 705 (732)
|+.+-...++|..+.
T Consensus 308 plliG~t~~Eg~~f~ 322 (517)
T d1ukca_ 308 PVLVGDDTDEGSNFA 322 (517)
T ss_dssp CEEEEEETBGGGGTS
T ss_pred ceEEeeccCchhhhh
Confidence 999988888887764
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.80 E-value=6e-07 Score=90.43 Aligned_cols=246 Identities=10% Similarity=-0.012 Sum_probs=136.3
Q ss_pred eEEECCCCcEEEEEEeccCCceEEEEEEECCCCce--ecc-ccc-ceeeeeEEEEeC--CcEEEEEEecCCCCCCCCCCC
Q 004766 136 KVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIV--EAD-ALS-WFKFSSIAWTHD--SKGFFYSRYPAPKEGKDMDAG 209 (732)
Q Consensus 136 ~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~--~~~-~~~-~~~~~~~~WspD--g~~l~y~~~~~~~~~~~~~~~ 209 (732)
.++|+|+|++|||.. |. ...|+.+|...... ... ... ......++|+|+ |+.|+-...
T Consensus 22 ~l~~~~~~~~la~~~---~~-~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~------------ 85 (325)
T d1pgua1 22 HLSYDPTTNAIAYPC---GK-SAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDE------------ 85 (325)
T ss_dssp CCEEETTTTEEEEEE---TT-EEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEET------------
T ss_pred EEEECCCCCEEEEEe---CC-CEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeC------------
Confidence 577999999999984 22 24566666544331 111 111 112478999985 455544332
Q ss_pred CcccCCcccEEEEEECCCCCCCCeEEEe----cCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCccc
Q 004766 210 TETDSNLYHEFYYHFLGTKQSEDILCWK----DPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEG 285 (732)
Q Consensus 210 ~~~~~~~~~~v~~~~lgt~~~~~~~v~~----~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~ 285 (732)
...|.+|++..+.....+-.. ......-+..+.|++||++|+..+.... ..+.+++.+++.
T Consensus 86 -------Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~---~~~~~~~~~~~~----- 150 (325)
T d1pgua1 86 -------SGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRD---NFGVFISWDSGN----- 150 (325)
T ss_dssp -------TSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSS---CSEEEEETTTCC-----
T ss_pred -------CCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeecccc---ceEEEEeecccc-----
Confidence 235777776543322211110 0111223567899999999988765433 224455555432
Q ss_pred ccccCCCCCcEEeeecccceE-EEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEecc-CCCCCceeEEEEecC-CE
Q 004766 286 FKKRDGLLPFVKLIDGFDAQY-EVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIP-EAERDVLESATAVNL-NQ 362 (732)
Q Consensus 286 ~~~~~~~~~~~~l~~~~~~~~-~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~-~~~~~~l~~~~~~~~-~~ 362 (732)
....+........ ..|++++..+++....+ ..+..+++...+....+.. ......+..+.+.++ +.
T Consensus 151 --------~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d---~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~ 219 (325)
T d1pgua1 151 --------SLGEVSGHSQRINACHLKQSRPMRSMTVGDD---GSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGE 219 (325)
T ss_dssp --------EEEECCSCSSCEEEEEECSSSSCEEEEEETT---TEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCC
T ss_pred --------cceeeeecccccccccccccccceEEEeecc---cccccccccccccceecccccCCCCccEEeeeccccce
Confidence 1222221111111 24888887766554432 3577788766542222222 222345778888874 56
Q ss_pred EEEEEecCCeeEEEEEeCCCCceeeecccccceee----EeecccCCcEEEEEEecCCCCceEEEEECCCCC
Q 004766 363 MIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVN----AISARREDSVVFISFTSFLIPGIVYQCNLKTET 430 (732)
Q Consensus 363 l~~~~~~~g~~~l~~~d~~~g~~~~~l~~~~g~v~----~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~~ 430 (732)
++++...++ .|.+||+.+++.+..+..+...+. .+.+ +|+..++ +.+. -..+..||+.+++
T Consensus 220 ~l~s~~~d~--~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~-~dg~~l~-s~s~---D~~i~iwd~~~~~ 284 (325)
T d1pgua1 220 FVITVGSDR--KISCFDGKSGEFLKYIEDDQEPVQGGIFALSW-LDSQKFA-TVGA---DATIRVWDVTTSK 284 (325)
T ss_dssp EEEEEETTC--CEEEEETTTCCEEEECCBTTBCCCSCEEEEEE-SSSSEEE-EEET---TSEEEEEETTTTE
T ss_pred ecccccccc--ceeeeeeccccccccccccccccccceeeeec-cCCCEEE-EEeC---CCeEEEEECCCCC
Confidence 777777774 688899988887667764433222 2222 5666543 4433 2578899998874
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.78 E-value=9.7e-07 Score=90.70 Aligned_cols=244 Identities=16% Similarity=0.035 Sum_probs=137.9
Q ss_pred EEEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceeccccc-ceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCC
Q 004766 132 AALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALS-WFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGT 210 (732)
Q Consensus 132 ~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~ 210 (732)
..+..++|||||++|+.... ...|++||..+++.+..... ......+.|++++..++....+
T Consensus 122 ~~V~~l~~s~~~~~l~s~~~-----dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~------------ 184 (388)
T d1erja_ 122 LYIRSVCFSPDGKFLATGAE-----DRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGD------------ 184 (388)
T ss_dssp CBEEEEEECTTSSEEEEEET-----TSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETT------------
T ss_pred CCEEEEEECCCCCcceeccc-----ccccccccccccccccccccccccccccccccccccccccccc------------
Confidence 44778999999999886532 23799999998885533221 1124678999999988876532
Q ss_pred cccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccC
Q 004766 211 ETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRD 290 (732)
Q Consensus 211 ~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~ 290 (732)
..+..|+..+... ...... .........+++||++|+....++ .+++++..++... ..+
T Consensus 185 -------~~i~~~d~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~l~~~~~d~-----~i~i~~~~~~~~~-~~~---- 243 (388)
T d1erja_ 185 -------RTVRIWDLRTGQC--SLTLSI--EDGVTTVAVSPGDGKYIAAGSLDR-----AVRVWDSETGFLV-ERL---- 243 (388)
T ss_dssp -------SEEEEEETTTTEE--EEEEEC--SSCEEEEEECSTTCCEEEEEETTS-----CEEEEETTTCCEE-EEE----
T ss_pred -------eeeeeeecccccc--cccccc--ccccccccccCCCCCeEEEEcCCC-----eEEEeecccCccc-eee----
Confidence 3578888765422 112211 122222233455888877655332 3778887764210 000
Q ss_pred CCCCcEEeeecccce-EEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCC------------ceEeccCCCCCceeEEEE
Q 004766 291 GLLPFVKLIDGFDAQ-YEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPND------------WFEVIPEAERDVLESATA 357 (732)
Q Consensus 291 ~~~~~~~l~~~~~~~-~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~------------~~~l~~~~~~~~l~~~~~ 357 (732)
.............. ...|+|+|+.|+..+.. ..|..+|+.++.. ......+ ...+..+.+
T Consensus 244 -~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~ 316 (388)
T d1erja_ 244 -DSENESGTGHKDSVYSVVFTRDGQSVVSGSLD----RSVKLWNLQNANNKSDSKTPNSGTCEVTYIGH--KDFVLSVAT 316 (388)
T ss_dssp -C------CCCSSCEEEEEECTTSSEEEEEETT----SEEEEEEC---------------CEEEEEECC--SSCEEEEEE
T ss_pred -ccccccccCCCCCEEEEEECCCCCEEEEEECC----CcEEEEeccCCccccccccccccceeeecccc--cceEEEEEE
Confidence 00000000011111 12488998877654432 3577777765431 0111112 245677888
Q ss_pred ecCCEEEEEEecCCeeEEEEEeCCCCceeeecccccceeeEee------cccCCcEEEEEEecCCCCceEEEEEC
Q 004766 358 VNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAIS------ARREDSVVFISFTSFLIPGIVYQCNL 426 (732)
Q Consensus 358 ~~~~~l~~~~~~~g~~~l~~~d~~~g~~~~~l~~~~g~v~~~~------~s~d~~~l~~~~ss~~~p~~~y~~d~ 426 (732)
++++.++++...++ .|++||+.+|+.+..+..+.+.|..+. ++|+++.+ ++.+.. ..+..|++
T Consensus 317 s~~~~~l~sg~~dg--~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l-~s~s~D---g~I~iW~~ 385 (388)
T d1erja_ 317 TQNDEYILSGSKDR--GVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVF-ATGSGD---CKARIWKY 385 (388)
T ss_dssp CGGGCEEEEEETTS--EEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEE-EEEETT---SEEEEEEE
T ss_pred CCCCCEEEEEeCCC--EEEEEECCCCcEEEEEeCCCCCEEEEEEecCcccCCCCCEE-EEEeCC---CEEEEEee
Confidence 87667777777775 699999998988777776655555543 46677644 344332 45666664
|
| >d2vata1 c.69.1.40 (A:7-382) Acetyl-CoA:deacetylcephalosporin C acetyltransferase CefG {Acremonium chrysogenum [TaxId: 5044]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: O-acetyltransferase domain: Acetyl-CoA:deacetylcephalosporin C acetyltransferase CefG species: Acremonium chrysogenum [TaxId: 5044]
Probab=98.76 E-value=1.9e-08 Score=102.40 Aligned_cols=135 Identities=11% Similarity=0.075 Sum_probs=89.2
Q ss_pred EEccCCCeeEE-EEEEEcC-CCCCCCCccEEEEEcCCCCccCCCCcChhH---HHHHHhcCcEEEEEcccCCCCCchhHH
Q 004766 456 VPSKDGSTKIP-MFIVSKK-NIKLDGSHPCLLYGYGGFNISVTPSFSVSR---TILMRHLGAVFCIANIRGGGEYGEEWH 530 (732)
Q Consensus 456 ~~s~dG~~~i~-~~~~~p~-~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~---~~~l~~~G~~v~~~~~rG~g~~g~~~~ 530 (732)
|+-..| ..|+ +.|.|.- +.-...+.++||+.|+-.+.+....|...+ -..++..-|-|+++|+-|++ +|..-.
T Consensus 18 F~le~G-~~l~~~~laY~t~G~ln~~~~NaVlv~h~ltg~~~~~~WW~~liG~g~alDt~kyfVI~~n~lG~~-~gst~p 95 (376)
T d2vata1 18 FTLESG-VILRDVPVAYKSWGRMNVSRDNCVIVCHTLTSSAHVTSWWPTLFGQGRAFDTSRYFIICLNYLGSP-FGSAGP 95 (376)
T ss_dssp EECTTS-CEEEEEEEEEEEESCCCTTSCCEEEEECCTTCCSCGGGTCGGGBSTTSSBCTTTCEEEEECCTTCS-SSSSST
T ss_pred EEeCCC-CCcCCceEEEEeecccCCCCCCEEEEcCCCcCCccccccHHHhCCCCCccCccceEEEEeccCCCC-cCCCCC
Confidence 444567 6664 5555542 111124568999999988776655553322 24567788999999999875 222111
Q ss_pred hc------c----cccCCccHHHHHHHHHHHHHHcCCCCCCcE-EEEecChhHHHHHHHHhhCCCeeeEEEEcCC
Q 004766 531 KG------G----ALAKKQNCFDDFISASEYLISAGYTQSRKL-CIEGGSNGGLLVGACINQRPDLFGCALAHVG 594 (732)
Q Consensus 531 ~~------~----~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i-~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p 594 (732)
.. + ......-++.|.+.+-..|.+. ..-+|+ +|+|+||||+.+...+.++|++...+|..+.
T Consensus 96 ~s~~p~~~~~~~yg~~FP~~ti~D~v~aq~~ll~~--LGI~~l~aViG~SmGGmqal~wa~~~Pd~v~~li~Ia~ 168 (376)
T d2vata1 96 CSPDPDAEGQRPYGAKFPRTTIRDDVRIHRQVLDR--LGVRQIAAVVGASMGGMHTLEWAFFGPEYVRKIVPIAT 168 (376)
T ss_dssp TSBCTTTC--CBCGGGCCCCCHHHHHHHHHHHHHH--HTCCCEEEEEEETHHHHHHHHHGGGCTTTBCCEEEESC
T ss_pred CCCCcccccCCcccccCCcchhHHHHHHHHHHHHH--hCcceEEEeecccHHHHHHHHHHHhchHHHhhhccccc
Confidence 10 0 0123345789999987766665 223576 7899999999999999999999988876654
|
| >d1qe3a_ c.69.1.1 (A:) Thermophilic para-nitrobenzyl esterase (PNB esterase) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Thermophilic para-nitrobenzyl esterase (PNB esterase) species: Bacillus subtilis [TaxId: 1423]
Probab=98.74 E-value=4.6e-09 Score=112.96 Aligned_cols=127 Identities=17% Similarity=0.180 Sum_probs=88.1
Q ss_pred EEEEEEEcCCCCCCCCccEEEEEcCCC---CccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhccccc-CCcc
Q 004766 465 IPMFIVSKKNIKLDGSHPCLLYGYGGF---NISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALA-KKQN 540 (732)
Q Consensus 465 i~~~~~~p~~~~~~~~~P~vv~~hG~~---~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~-~~~~ 540 (732)
+.+-|+.|+. .+++.|+||++|||. |+.....+.. ..++.+.+.+||.+|||-|- +|--........ .+-.
T Consensus 82 L~lni~~P~~--~~~~lPV~v~ihGG~~~~g~~~~~~~~~--~~~~~~~~vVvV~~nYRlg~-~GFl~~~~~~~~~~gN~ 156 (483)
T d1qe3a_ 82 LYVNVFAPDT--PSQNLPVMVWIHGGAFYLGAGSEPLYDG--SKLAAQGEVIVVTLNYRLGP-FGFLHLSSFDEAYSDNL 156 (483)
T ss_dssp CEEEEEEECS--SCCSEEEEEEECCSTTTSCCTTSGGGCC--HHHHHHHTCEEEEECCCCHH-HHSCCCTTTCTTSCSCH
T ss_pred CEEEEEECCC--CCCCCceEEEEeecccccCCcccccccc--ccccccCceEEEeecccccc-hhhcccccccccccccc
Confidence 5666777875 356899999999994 3322333333 34556578999999999542 111000111111 2234
Q ss_pred HHHHHHHHHHHHHHc---CCCCCCcEEEEecChhHHHHHHHHhh--CCCeeeEEEEcCCcc
Q 004766 541 CFDDFISASEYLISA---GYTQSRKLCIEGGSNGGLLVGACINQ--RPDLFGCALAHVGVM 596 (732)
Q Consensus 541 ~~~D~~~~~~~l~~~---~~~d~~~i~i~G~S~GG~l~~~~~~~--~p~~f~a~v~~~p~~ 596 (732)
.+.|++.|++|++++ ---||++|.|+|+|+||..+..++.. ...+|+.+|+.+|..
T Consensus 157 Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~l~sp~~~gLF~raI~~SGs~ 217 (483)
T d1qe3a_ 157 GLLDQAAALKWVRENISAFGGDPDNVTVFGESAGGMSIAALLAMPAAKGLFQKAIMESGAS 217 (483)
T ss_dssp HHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHTTCGGGTTSCSEEEEESCCC
T ss_pred ccHHHHHHHHHHHHHHHHcCCCcccceeeccccccchhhhhhcccccCCcceeeccccCCc
Confidence 599999999999876 22599999999999999999888774 234999999999864
|
| >d1tcaa_ c.69.1.17 (A:) Triacylglycerol lipase {Yeast (Candida antarctica), form b [TaxId: 34362]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Triacylglycerol lipase species: Yeast (Candida antarctica), form b [TaxId: 34362]
Probab=98.74 E-value=3.8e-08 Score=97.62 Aligned_cols=102 Identities=20% Similarity=0.071 Sum_probs=72.8
Q ss_pred CCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCccHHHHHHHHHHHHHHcCCC
Q 004766 479 GSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYT 558 (732)
Q Consensus 479 ~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~ 558 (732)
...| ||++||.........|. .+..+|.++||.|+.+|++|.|.- ......+++.++++++.+. +
T Consensus 30 ~~~P-VvlvHG~~~~~~~~~~~-~~~~~L~~~Gy~v~~~d~~g~g~~-----------d~~~sae~la~~i~~v~~~--~ 94 (317)
T d1tcaa_ 30 VSKP-ILLVPGTGTTGPQSFDS-NWIPLSTQLGYTPCWISPPPFMLN-----------DTQVNTEYMVNAITALYAG--S 94 (317)
T ss_dssp CSSE-EEEECCTTCCHHHHHTT-THHHHHHTTTCEEEEECCTTTTCS-----------CHHHHHHHHHHHHHHHHHH--T
T ss_pred CCCc-EEEECCCCCCCcchhHH-HHHHHHHhCCCeEEEecCCCCCCC-----------chHhHHHHHHHHHHHHHHh--c
Confidence 4456 56789965443222232 355677779999999999986521 1233457888889998776 3
Q ss_pred CCCcEEEEecChhHHHHHHHHhhCCC---eeeEEEEcCCc
Q 004766 559 QSRKLCIEGGSNGGLLVGACINQRPD---LFGCALAHVGV 595 (732)
Q Consensus 559 d~~~i~i~G~S~GG~l~~~~~~~~p~---~f~a~v~~~p~ 595 (732)
..+||.|+|||+||+++.+++.++|+ +.+.+|...|.
T Consensus 95 g~~kV~lVGhS~GG~~a~~~l~~~p~~~~~V~~~v~i~~~ 134 (317)
T d1tcaa_ 95 GNNKLPVLTWSQGGLVAQWGLTFFPSIRSKVDRLMAFAPD 134 (317)
T ss_dssp TSCCEEEEEETHHHHHHHHHHHHCGGGTTTEEEEEEESCC
T ss_pred cCCceEEEEeCchHHHHHHHHHHCCCcchheeEEEEeCCC
Confidence 34689999999999999999998885 46777766654
|
| >d1jmkc_ c.69.1.22 (C:) Surfactin synthetase, SrfA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterase domain of polypeptide, polyketide and fatty acid synthases domain: Surfactin synthetase, SrfA species: Bacillus subtilis [TaxId: 1423]
Probab=98.71 E-value=3.3e-08 Score=94.24 Aligned_cols=81 Identities=10% Similarity=0.034 Sum_probs=58.8
Q ss_pred CCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCccHHHHHHHHHHHHHHcCCC
Q 004766 479 GSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYT 558 (732)
Q Consensus 479 ~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~ 558 (732)
++.|+||++||..+.. ..|.. +...|. +|.|..++++|.++ ..+++++++..+.
T Consensus 15 ~~~~~l~~lhg~~g~~--~~~~~-la~~L~--~~~v~~~~~~g~~~----------------~a~~~~~~i~~~~----- 68 (230)
T d1jmkc_ 15 DQEQIIFAFPPVLGYG--LMYQN-LSSRLP--SYKLCAFDFIEEED----------------RLDRYADLIQKLQ----- 68 (230)
T ss_dssp TCSEEEEEECCTTCCG--GGGHH-HHHHCT--TEEEEEECCCCSTT----------------HHHHHHHHHHHHC-----
T ss_pred CCCCeEEEEcCCCCCH--HHHHH-HHHHCC--CCEEeccCcCCHHH----------------HHHHHHHHHHHhC-----
Confidence 5678999999998875 34543 345553 79999999998543 3466666665442
Q ss_pred CCCcEEEEecChhHHHHHHHHhhCCCe
Q 004766 559 QSRKLCIEGGSNGGLLVGACINQRPDL 585 (732)
Q Consensus 559 d~~~i~i~G~S~GG~l~~~~~~~~p~~ 585 (732)
...++.++|||+||.++..++.+.|++
T Consensus 69 ~~~~~~lvGhS~GG~vA~~~A~~~~~~ 95 (230)
T d1jmkc_ 69 PEGPLTLFGYSAGCSLAFEAAKKLEGQ 95 (230)
T ss_dssp CSSCEEEEEETHHHHHHHHHHHHHHHT
T ss_pred CCCcEEEEeeccChHHHHHHHHhhhhh
Confidence 235799999999999999888876543
|
| >d2h7ca1 c.69.1.1 (A:1021-1553) Mammalian carboxylesterase (liver carboxylesterase I) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Mammalian carboxylesterase (liver carboxylesterase I) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.69 E-value=2.4e-08 Score=108.76 Aligned_cols=128 Identities=19% Similarity=0.224 Sum_probs=90.4
Q ss_pred EEEEEEEcCCCCCCCCccEEEEEcCCCCcc-CCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccc-cCCccHH
Q 004766 465 IPMFIVSKKNIKLDGSHPCLLYGYGGFNIS-VTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGAL-AKKQNCF 542 (732)
Q Consensus 465 i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~-~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~-~~~~~~~ 542 (732)
+..-|+.|+....+.+.|+||++|||.-.. ....+.. ..++++++.+||.+|||-|- +| |...+.. ..+-..+
T Consensus 97 L~LnI~~P~~~~~~~~lPV~v~ihGG~~~~gs~~~~~~--~~~~~~~~vIvVt~nYRLg~-~G--Fl~~~~~~~~gN~Gl 171 (532)
T d2h7ca1 97 LYLNIYTPADLTKKNRLPVMVWIHGGGLMVGAASTYDG--LALAAHENVVVVTIQYRLGI-WG--FFSTGDEHSRGNWGH 171 (532)
T ss_dssp CEEEEEECSCTTSCCCEEEEEEECCSTTTSCCSTTSCC--HHHHHHHTCEEEEECCCCHH-HH--HCCCSSTTCCCCHHH
T ss_pred CEEEEEECCCCCCCCCcEEEEEEeCCcccccccccCCc--hhhhhcCceEEEEEeeccCC-Cc--ccccccccccccccc
Confidence 556677887765667899999999994322 2223333 24556699999999999541 11 1111111 1223469
Q ss_pred HHHHHHHHHHHHc---CCCCCCcEEEEecChhHHHHHHHHhh--CCCeeeEEEEcCCccc
Q 004766 543 DDFISASEYLISA---GYTQSRKLCIEGGSNGGLLVGACINQ--RPDLFGCALAHVGVMD 597 (732)
Q Consensus 543 ~D~~~~~~~l~~~---~~~d~~~i~i~G~S~GG~l~~~~~~~--~p~~f~a~v~~~p~~d 597 (732)
.|.+.|++|++++ ---||++|-|+|+|+||..+..++.. ...+|+.+|+.++..-
T Consensus 172 ~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~l~sp~~~~LF~raI~~SG~~~ 231 (532)
T d2h7ca1 172 LDQVAALRWVQDNIASFGGNPGSVTIFGESAGGESVSVLVLSPLAKNLFHRAISESGVAL 231 (532)
T ss_dssp HHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGTTSCSEEEEESCCTT
T ss_pred HHHHHHHHHHHHHHHHhcCCcceeeeeccccccchHHHHHhhhhccCcchhhhhhccccc
Confidence 9999999999876 23599999999999999998887763 3459999999998653
|
| >d1thga_ c.69.1.17 (A:) Type-B carboxylesterase/lipase {Fungus (Geotrichum candidum), ATCC 34614 [TaxId: 27317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Type-B carboxylesterase/lipase species: Fungus (Geotrichum candidum), ATCC 34614 [TaxId: 27317]
Probab=98.68 E-value=8.7e-09 Score=112.36 Aligned_cols=128 Identities=19% Similarity=0.249 Sum_probs=88.2
Q ss_pred EEEEEEEcCCCCCCCCccEEEEEcCCCCccC-CCCcChh---HHHHHHhcCcEEEEEcccCCC-CC--chhHHhcccccC
Q 004766 465 IPMFIVSKKNIKLDGSHPCLLYGYGGFNISV-TPSFSVS---RTILMRHLGAVFCIANIRGGG-EY--GEEWHKGGALAK 537 (732)
Q Consensus 465 i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~-~~~~~~~---~~~~l~~~G~~v~~~~~rG~g-~~--g~~~~~~~~~~~ 537 (732)
+.+-|+.|++...+.+.|+||++|||.-... ...+... -..++...+.+||.+|||-|- || ..+... ...
T Consensus 106 L~LnI~~P~~~~~~~~lPV~V~ihGG~f~~G~~~~~~~~~~~~~~~~~~~~vIvVt~nYRlg~~Gfl~~~~~~~---~~~ 182 (544)
T d1thga_ 106 LYLNVFRPAGTKPDAKLPVMVWIYGGAFVYGSSAAYPGNSYVKESINMGQPVVFVSINYRTGPFGFLGGDAITA---EGN 182 (544)
T ss_dssp CEEEEEEETTCCTTCCEEEEEEECCCTTCCSGGGGCCSHHHHHHHHHTTCCCEEEEECCCCHHHHHCCSHHHHH---HTC
T ss_pred CEEEEEECCCCCCCCCCCEEEEeccCCCccCCCccCCcchhhhhhhhccCCeEEEecccccccccccCCchhhc---ccc
Confidence 5666778877666678999999999843221 1222221 123455689999999999531 11 111111 112
Q ss_pred CccHHHHHHHHHHHHHHc---CCCCCCcEEEEecChhHHHHHHHHhh--------CCCeeeEEEEcCCc
Q 004766 538 KQNCFDDFISASEYLISA---GYTQSRKLCIEGGSNGGLLVGACINQ--------RPDLFGCALAHVGV 595 (732)
Q Consensus 538 ~~~~~~D~~~~~~~l~~~---~~~d~~~i~i~G~S~GG~l~~~~~~~--------~p~~f~a~v~~~p~ 595 (732)
+-..+.|.+.|++|++++ ---||++|-|+|+|+||..+..++.- ...+|+.+|+++|.
T Consensus 183 gN~Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SaGa~~v~~~l~sp~~~~~~~s~gLF~raI~qSG~ 251 (544)
T d1thga_ 183 TNAGLHDQRKGLEWVSDNIANFGGDPDKVMIFGESAGAMSVAHQLIAYGGDNTYNGKKLFHSAILQSGG 251 (544)
T ss_dssp TTHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHGGGTCCEETTEESCSEEEEESCC
T ss_pred ccHHHHHhhhhhhhhhhhhcccccCCCceEeeeeccchHHHHHHHhCcCCCcccchhhhhccccccccc
Confidence 334689999999999876 23599999999999999998887753 12499999999885
|
| >d1cvla_ c.69.1.18 (A:) Lipase {Chromobacterium viscosum [TaxId: 42739]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Bacterial lipase domain: Lipase species: Chromobacterium viscosum [TaxId: 42739]
Probab=98.65 E-value=4.3e-08 Score=98.72 Aligned_cols=102 Identities=17% Similarity=0.143 Sum_probs=74.4
Q ss_pred CCccEEEEEcCCCCccCCC----CcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCccHHHHHHHHHHHHHH
Q 004766 479 GSHPCLLYGYGGFNISVTP----SFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLIS 554 (732)
Q Consensus 479 ~~~P~vv~~hG~~~~~~~~----~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~ 554 (732)
.++|+| ++||.++..... .|. .+...|.++||.|+++|+||.|... ......+++.+.++.+++
T Consensus 7 ~k~Pvv-lvHG~~g~~~~~~~~~~~~-~~~~~L~~~G~~V~~~~~~g~g~s~----------~~~~~~~~l~~~i~~~~~ 74 (319)
T d1cvla_ 7 TRYPVI-LVHGLAGTDKFANVVDYWY-GIQSDLQSHGAKVYVANLSGFQSDD----------GPNGRGEQLLAYVKQVLA 74 (319)
T ss_dssp CSSCEE-EECCTTBSSEETTTEESST-THHHHHHHTTCCEEECCCBCSSCTT----------STTSHHHHHHHHHHHHHH
T ss_pred CCCCEE-EECCCCCCcchhhhhhhHH-HHHHHHHHCCCEEEEecCCCCCCCC----------CCcccHHHHHHHHHHHHH
Confidence 467864 679987654321 233 3556677799999999999876421 112245677777766665
Q ss_pred cCCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCC
Q 004766 555 AGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVG 594 (732)
Q Consensus 555 ~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p 594 (732)
. ...++|.++|||+||+++..++.++|++++.+|+..+
T Consensus 75 ~--~~~~~v~lvGhS~GG~~~~~~~~~~p~~v~~vv~i~~ 112 (319)
T d1cvla_ 75 A--TGATKVNLIGHSQGGLTSRYVAAVAPQLVASVTTIGT 112 (319)
T ss_dssp H--HCCSCEEEEEETTHHHHHHHHHHHCGGGEEEEEEESC
T ss_pred H--hCCCCEEEEeccccHHHHHHHHHHCccccceEEEECC
Confidence 4 3457999999999999999999999999999988765
|
| >d2ha2a1 c.69.1.1 (A:1-542) Acetylcholinesterase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Acetylcholinesterase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.64 E-value=1.3e-08 Score=111.25 Aligned_cols=128 Identities=21% Similarity=0.180 Sum_probs=87.5
Q ss_pred EEEEEEEcCCCCCCCCccEEEEEcCCC---CccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCccH
Q 004766 465 IPMFIVSKKNIKLDGSHPCLLYGYGGF---NISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNC 541 (732)
Q Consensus 465 i~~~~~~p~~~~~~~~~P~vv~~hG~~---~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~ 541 (732)
+.+-|+.|+.. ...+.|+||++|||. |+...+.+... .+.++.+.+||.+|||-|- +|--.........+-..
T Consensus 97 L~LnI~~P~~~-~~~~lPV~v~ihGG~~~~gs~~~~~~~~~--~~~~~~~vvvVt~nYRlg~-~Gfl~~~~~~~~~gN~G 172 (542)
T d2ha2a1 97 LYLNVWTPYPR-PASPTPVLIWIYGGGFYSGAASLDVYDGR--FLAQVEGAVLVSMNYRVGT-FGFLALPGSREAPGNVG 172 (542)
T ss_dssp CEEEEEEESSC-CSSCEEEEEEECCSTTTCCCTTSGGGCTH--HHHHHHCCEEEEECCCCHH-HHHCCCTTCSSCCSCHH
T ss_pred CEEEEEecCCC-CCCCCcEEEEEEECccccccCcccccCch--hhhhhccceeEeeeeeccc-eeeecccccccCCCcCC
Confidence 44556677642 346789999999983 34444445543 3445589999999999431 11100011111223346
Q ss_pred HHHHHHHHHHHHHc---CCCCCCcEEEEecChhHHHHHHHHhhC--CCeeeEEEEcCCcc
Q 004766 542 FDDFISASEYLISA---GYTQSRKLCIEGGSNGGLLVGACINQR--PDLFGCALAHVGVM 596 (732)
Q Consensus 542 ~~D~~~~~~~l~~~---~~~d~~~i~i~G~S~GG~l~~~~~~~~--p~~f~a~v~~~p~~ 596 (732)
+.|++.|++|++++ ---||++|-|+|+|+||..+..++... ..+|..+|+.++..
T Consensus 173 l~Dq~~AL~WV~~nI~~FGGDP~~VTi~G~SAGa~sv~~ll~sp~~~~LF~~aI~~SG~~ 232 (542)
T d2ha2a1 173 LLDQRLALQWVQENIAAFGGDPMSVTLFGESAGAASVGMHILSLPSRSLFHRAVLQSGTP 232 (542)
T ss_dssp HHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHSHHHHTTCSEEEEESCCS
T ss_pred cccHHHHHHHHHHHHHHhhcCccccccccccccccchhhhhhhhhhhHHhhhheeecccc
Confidence 99999999999876 235999999999999999999877742 25999999998854
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.63 E-value=1.5e-05 Score=79.74 Aligned_cols=252 Identities=11% Similarity=0.081 Sum_probs=142.7
Q ss_pred EEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecccc-cceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCc
Q 004766 133 ALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADAL-SWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTE 211 (732)
Q Consensus 133 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~-~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~ 211 (732)
.+.++.|.+||+ | |.++..+. .|+.++.++++...... ......++++++||+ |+++....
T Consensus 41 ~lEG~~~D~~G~-L-y~~D~~~g---~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~-l~va~~~~------------ 102 (319)
T d2dg1a1 41 QLEGLNFDRQGQ-L-FLLDVFEG---NIFKINPETKEIKRPFVSHKANPAAIKIHKDGR-LFVCYLGD------------ 102 (319)
T ss_dssp CEEEEEECTTSC-E-EEEETTTC---EEEEECTTTCCEEEEEECSSSSEEEEEECTTSC-EEEEECTT------------
T ss_pred CcEeCEECCCCC-E-EEEECCCC---EEEEEECCCCeEEEEEeCCCCCeeEEEECCCCC-EEEEecCC------------
Confidence 356899999998 5 44454443 68888988876432211 111246899999996 44443211
Q ss_pred ccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCC--cceEEEEEEeCCCCCCCccccccc
Q 004766 212 TDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENC--DPVNKVYYCDLSALPEGLEGFKKR 289 (732)
Q Consensus 212 ~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~--~~~~~l~~~d~~~~~~~~~~~~~~ 289 (732)
......++..+..+... ..+.+..........+.+++||+ |++...... .....++.++.+++.
T Consensus 103 --~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~~nd~~~d~~G~-l~vtd~~~~~~~~~g~v~~~~~dg~~--------- 168 (319)
T d2dg1a1 103 --FKSTGGIFAATENGDNL--QDIIEDLSTAYCIDDMVFDSKGG-FYFTDFRGYSTNPLGGVYYVSPDFRT--------- 168 (319)
T ss_dssp --SSSCCEEEEECTTSCSC--EEEECSSSSCCCEEEEEECTTSC-EEEEECCCBTTBCCEEEEEECTTSCC---------
T ss_pred --CccceeEEEEcCCCcee--eeeccCCCcccCCcceeEEeccc-eeecccccccccCcceeEEEecccce---------
Confidence 01223455555544322 22222211122234688999997 444432221 124568888876532
Q ss_pred CCCCCcEEeeecccceE-EEEEecCCeEEEEeCCCCCCceEEEEeCCCCCC-ce----Ee-ccCCCCCceeEEEEecCCE
Q 004766 290 DGLLPFVKLIDGFDAQY-EVIANDDTVFTFLTNKDAPKYKIIRVDLKEPND-WF----EV-IPEAERDVLESATAVNLNQ 362 (732)
Q Consensus 290 ~~~~~~~~l~~~~~~~~-~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~-~~----~l-~~~~~~~~l~~~~~~~~~~ 362 (732)
...+..+..... ..|++|++.||+.-.. ..+|++++++.... .. .+ ........-.++.+..++.
T Consensus 169 -----~~~~~~~~~~pnGia~s~dg~~lyvad~~---~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~ 240 (319)
T d2dg1a1 169 -----VTPIIQNISVANGIALSTDEKVLWVTETT---ANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDN 240 (319)
T ss_dssp -----EEEEEEEESSEEEEEECTTSSEEEEEEGG---GTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCC
T ss_pred -----eEEEeeccceeeeeeeccccceEEEeccc---CCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCC
Confidence 333433322211 2589999988875432 45799998764321 11 11 1111112245677777678
Q ss_pred EEEEEecCCeeEEEEEeCCCCceeeecccccc------eeeEeecccCCcEEEEEEecCCCC--ceEEEEECC
Q 004766 363 MIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIG------SVNAISARREDSVVFISFTSFLIP--GIVYQCNLK 427 (732)
Q Consensus 363 l~~~~~~~g~~~l~~~d~~~g~~~~~l~~~~g------~v~~~~~s~d~~~l~~~~ss~~~p--~~~y~~d~~ 427 (732)
|++....+ ..|.+++.+ |+.+.+|.+|.. .+..+.+.++.+.++++..+...+ ..+|.++..
T Consensus 241 l~Va~~~~--g~V~~~~p~-G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~g~l~~~~~~ 310 (319)
T d2dg1a1 241 LYVAMYGQ--GRVLVFNKR-GYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNGF 310 (319)
T ss_dssp EEEEEETT--TEEEEECTT-SCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEECS
T ss_pred EEEEEcCC--CEEEEECCC-CcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEcCCCCcCCceeEEEEeCC
Confidence 88877655 579999985 988888877621 234555666777777766554333 457777654
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.60 E-value=1.3e-06 Score=87.38 Aligned_cols=110 Identities=12% Similarity=-0.034 Sum_probs=65.9
Q ss_pred EeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceeccc---cc---ceeeeeEEEEeCCcEEEEEEecCCCCCCCCCC
Q 004766 135 IKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADA---LS---WFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDA 208 (732)
Q Consensus 135 ~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~---~~---~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~ 208 (732)
..+++||||++|+.+...+ ..|++||+++|+.+... .. ......++||||++.++..........
T Consensus 37 ~~i~~spDg~~l~v~~~~~----~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~----- 107 (337)
T d1pbyb_ 37 MVPMVAPGGRIAYATVNKS----ESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLEL----- 107 (337)
T ss_dssp CCEEECTTSSEEEEEETTT----TEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECS-----
T ss_pred cEEEECCCCCEEEEEECCC----CeEEEEECCCCcEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCccee-----
Confidence 4789999999886653222 37999999999864311 10 112357899999999988764321100
Q ss_pred CCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEE
Q 004766 209 GTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMC 260 (732)
Q Consensus 209 ~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~ 260 (732)
.........+..++..+.... ..+.... ....+.+||||++++..
T Consensus 108 --~~~~~~~~~~~~~d~~~~~~~--~~~~~~~---~~~~~~~s~dg~~l~~~ 152 (337)
T d1pbyb_ 108 --THFEVQPTRVALYDAETLSRR--KAFEAPR---QITMLAWARDGSKLYGL 152 (337)
T ss_dssp --SCEEECCCEEEEEETTTTEEE--EEEECCS---SCCCEEECTTSSCEEEE
T ss_pred --eeccccccceeeccccCCeEE--EeccccC---CceEEEEcCCCCEEEEE
Confidence 000112345677777654321 2222222 23467899999998764
|
| >d1ea5a_ c.69.1.1 (A:) Acetylcholinesterase {Pacific electric ray (Torpedo californica) [TaxId: 7787]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Acetylcholinesterase species: Pacific electric ray (Torpedo californica) [TaxId: 7787]
Probab=98.60 E-value=1.8e-08 Score=109.58 Aligned_cols=127 Identities=22% Similarity=0.184 Sum_probs=87.3
Q ss_pred EEEEEEEcCCCCCCCCccEEEEEcCCC---CccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCccH
Q 004766 465 IPMFIVSKKNIKLDGSHPCLLYGYGGF---NISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNC 541 (732)
Q Consensus 465 i~~~~~~p~~~~~~~~~P~vv~~hG~~---~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~ 541 (732)
+..-|+.|+.. .++.|++|++|||. |+...+.+.. ..++.+++.+||.+|||-|- +|--.........+-..
T Consensus 92 L~LnI~~P~~~--~~~lPV~v~ihGG~~~~g~~~~~~~~~--~~~~~~~~vvvVt~nYRlg~-~GFl~~~~~~~~~gN~G 166 (532)
T d1ea5a_ 92 LYLNIWVPSPR--PKSTTVMVWIYGGGFYSGSSTLDVYNG--KYLAYTEEVVLVSLSYRVGA-FGFLALHGSQEAPGNVG 166 (532)
T ss_dssp CEEEEEECSSC--CSSEEEEEEECCSTTTCCCTTCGGGCT--HHHHHHHTCEEEECCCCCHH-HHHCCCTTCSSSCSCHH
T ss_pred CEEEEEeCCCC--CCCCcEEEEEEcCCcccccCCccccCc--chhhcccCccEEEEeecccc-ccccccccccCCCCccc
Confidence 44556677653 45789999999983 3333344443 34455689999999999541 11100111111223347
Q ss_pred HHHHHHHHHHHHHc---CCCCCCcEEEEecChhHHHHHHHHhh--CCCeeeEEEEcCCcc
Q 004766 542 FDDFISASEYLISA---GYTQSRKLCIEGGSNGGLLVGACINQ--RPDLFGCALAHVGVM 596 (732)
Q Consensus 542 ~~D~~~~~~~l~~~---~~~d~~~i~i~G~S~GG~l~~~~~~~--~p~~f~a~v~~~p~~ 596 (732)
+.|.+.|++|++++ ---||++|.|+|+|+||..+..++.. ...+|..+|+.++..
T Consensus 167 l~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~~~sp~~~~lF~~aI~~Sg~~ 226 (532)
T d1ea5a_ 167 LLDQRMALQWVHDNIQFFGGDPKTVTIFGESAGGASVGMHILSPGSRDLFRRAILQSGSP 226 (532)
T ss_dssp HHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCHHHHTTCSEEEEESCCT
T ss_pred chhHHHHHHHHHHHHHhhcCCccceEeeeecccccchhhhccCccchhhhhhheeecccc
Confidence 99999999999886 23599999999999999998888774 234899999988754
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.58 E-value=2.5e-05 Score=76.93 Aligned_cols=242 Identities=11% Similarity=0.108 Sum_probs=141.7
Q ss_pred eEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCC
Q 004766 136 KVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSN 215 (732)
Q Consensus 136 ~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~ 215 (732)
++.|.+....|.|+ |..+ ..|+.+|.++|+........ ..+.+++.+||+ |+++..
T Consensus 22 gp~wd~~~~~l~wv-Di~~---~~I~r~d~~~g~~~~~~~~~-~~~~i~~~~dg~-l~va~~------------------ 77 (295)
T d2ghsa1 22 GPTFDPASGTAWWF-NILE---RELHELHLASGRKTVHALPF-MGSALAKISDSK-QLIASD------------------ 77 (295)
T ss_dssp EEEEETTTTEEEEE-EGGG---TEEEEEETTTTEEEEEECSS-CEEEEEEEETTE-EEEEET------------------
T ss_pred CCeEECCCCEEEEE-ECCC---CEEEEEECCCCeEEEEECCC-CcEEEEEecCCC-EEEEEe------------------
Confidence 79999988878766 4333 37999999999754322222 247788999986 444431
Q ss_pred cccEEEEEECCCCCCCCeEEEecCC-CC-eeEEEeEEecCCcEEEEEEecCC-cceEEEEEEeCCCCCCCcccccccCCC
Q 004766 216 LYHEFYYHFLGTKQSEDILCWKDPE-HP-KYIFSGHVTEDGQYLVMCIEENC-DPVNKVYYCDLSALPEGLEGFKKRDGL 292 (732)
Q Consensus 216 ~~~~v~~~~lgt~~~~~~~v~~~~~-~~-~~~~~~~~SpDg~~l~~~~~~~~-~~~~~l~~~d~~~~~~~~~~~~~~~~~ 292 (732)
..|++++..++..+ .+..... .+ ....+..+.|+|+..+-...... .....+|.++ .+.
T Consensus 78 --~gl~~~d~~tg~~~--~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~--~g~------------ 139 (295)
T d2ghsa1 78 --DGLFLRDTATGVLT--LHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGK------------ 139 (295)
T ss_dssp --TEEEEEETTTCCEE--EEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTE------------
T ss_pred --CccEEeecccceee--EEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeec--CCc------------
Confidence 24888888776432 2322111 11 23457788999985443332221 1123455443 221
Q ss_pred CCcEEeeecccc-eEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCC-----CceEec-cCCCCCceeEEEEecCCEEEE
Q 004766 293 LPFVKLIDGFDA-QYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPN-----DWFEVI-PEAERDVLESATAVNLNQMIV 365 (732)
Q Consensus 293 ~~~~~l~~~~~~-~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~-----~~~~l~-~~~~~~~l~~~~~~~~~~l~~ 365 (732)
...+..+... .-..|+++++.+|+.-.. ..+|++++++... .....+ .........++.+..++.|++
T Consensus 140 --~~~~~~~~~~~Ng~~~s~d~~~l~~~dt~---~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWv 214 (295)
T d2ghsa1 140 --VTKLFADISIPNSICFSPDGTTGYFVDTK---VNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWN 214 (295)
T ss_dssp --EEEEEEEESSEEEEEECTTSCEEEEEETT---TCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEE
T ss_pred --EEEEeeccCCcceeeecCCCceEEEeecc---cceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEe
Confidence 2233332221 123589999988876543 3578888765321 112222 112234456777776677887
Q ss_pred EEecCCeeEEEEEeCCCCceeeecccccceeeEeec-ccCCcEEEEEEecCCC----------CceEEEEECC
Q 004766 366 SYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISA-RREDSVVFISFTSFLI----------PGIVYQCNLK 427 (732)
Q Consensus 366 ~~~~~g~~~l~~~d~~~g~~~~~l~~~~g~v~~~~~-s~d~~~l~~~~ss~~~----------p~~~y~~d~~ 427 (732)
..-.. ..|.++|.+ |+.+..|.+|...++++.+ -+|.++|+++..+... .+.+|.+++.
T Consensus 215 a~~~~--g~V~~~dp~-G~~~~~i~lP~~~~T~~~FGG~d~~~LyvTta~~~~~~~~~~~~p~~G~l~~~~~~ 284 (295)
T d2ghsa1 215 ARWGE--GAVDRYDTD-GNHIARYEVPGKQTTCPAFIGPDASRLLVTSAREHLDDDAITANPQHGLTFELGIE 284 (295)
T ss_dssp EEETT--TEEEEECTT-CCEEEEEECSCSBEEEEEEESTTSCEEEEEEBCTTCCHHHHHHCTTTTCEEECSSC
T ss_pred eeeCC--CceEEecCC-CcEeeEecCCCCceEEEEEeCCCCCEEEEEECCcCCChhHhccCCCCceEEEEcCC
Confidence 76555 479999986 8888899888545555554 3677889988665332 2467766543
|
| >d1p0ia_ c.69.1.1 (A:) Butyryl cholinesterase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Butyryl cholinesterase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.58 E-value=3.1e-08 Score=107.55 Aligned_cols=127 Identities=18% Similarity=0.139 Sum_probs=86.0
Q ss_pred EEEEEEEcCCCCCCCCccEEEEEcCCC---CccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCccH
Q 004766 465 IPMFIVSKKNIKLDGSHPCLLYGYGGF---NISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNC 541 (732)
Q Consensus 465 i~~~~~~p~~~~~~~~~P~vv~~hG~~---~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~ 541 (732)
+.+-|+.|... .++.|+||++|||. |+.....+... .+.++.+.+||.+|||-|- +|---........+-..
T Consensus 90 L~lnI~~P~~~--~~~~PV~v~ihGG~~~~gs~~~~~~~~~--~~~~~~~vVvVt~nYRlg~-~Gfl~~~~~~~~~gN~G 164 (526)
T d1p0ia_ 90 LYLNVWIPAPK--PKNATVLIWIYGGGFQTGTSSLHVYDGK--FLARVERVIVVSMNYRVGA-LGFLALPGNPEAPGNMG 164 (526)
T ss_dssp CEEEEEEESSC--CSSEEEEEEECCSTTTSCCTTCGGGCTH--HHHHHHCCEEEEECCCCHH-HHHCCCTTCTTSCSCHH
T ss_pred CEEEEEeCCCC--CCCCceEEEEECCCcccccCcccccCcc--ccccccceeEEeccccccc-ccccCCCCccccccccc
Confidence 55566677652 46789999999983 33333344432 3445589999999999541 11000001111223346
Q ss_pred HHHHHHHHHHHHHc---CCCCCCcEEEEecChhHHHHHHHHhh--CCCeeeEEEEcCCcc
Q 004766 542 FDDFISASEYLISA---GYTQSRKLCIEGGSNGGLLVGACINQ--RPDLFGCALAHVGVM 596 (732)
Q Consensus 542 ~~D~~~~~~~l~~~---~~~d~~~i~i~G~S~GG~l~~~~~~~--~p~~f~a~v~~~p~~ 596 (732)
+.|.+.|++|++++ ---||+||-|+|.|+||..+..++.. ...+|..+|+.++..
T Consensus 165 l~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~~~sp~~~~lf~~aI~~Sg~~ 224 (526)
T d1p0ia_ 165 LFDQQLALQWVQKNIAAFGGNPKSVTLFGESAGAASVSLHLLSPGSHSLFTRAILQSGSF 224 (526)
T ss_dssp HHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGGGGCSEEEEESCCT
T ss_pred ccchhhhhhhHHHHHHHhhcCchheeehhhccccceeeccccCCcchhhhhhhhcccccc
Confidence 99999999999876 23599999999999999999877653 334899999887754
|
| >d1dx4a_ c.69.1.1 (A:) Acetylcholinesterase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Acetylcholinesterase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.55 E-value=9.9e-08 Score=104.56 Aligned_cols=119 Identities=18% Similarity=0.159 Sum_probs=82.5
Q ss_pred CCCCccEEEEEcCCC---CccCCCCcChhHHHHHHhcCcEEEEEcccCCC-CC---chhHHhccc-ccCCccHHHHHHHH
Q 004766 477 LDGSHPCLLYGYGGF---NISVTPSFSVSRTILMRHLGAVFCIANIRGGG-EY---GEEWHKGGA-LAKKQNCFDDFISA 548 (732)
Q Consensus 477 ~~~~~P~vv~~hG~~---~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g-~~---g~~~~~~~~-~~~~~~~~~D~~~~ 548 (732)
..++.|+|||+|||. |+...+.|... .+.++.+.+||.+|||-|- || +........ ...+-..+.|.+.|
T Consensus 135 ~~~~lPV~V~ihGG~f~~Gs~~~~~~~~~--~l~~~~~vVvVtinYRlg~fGFl~~~~~~~~~~~~~~~gN~Gl~Dq~~A 212 (571)
T d1dx4a_ 135 TTNGLPILIWIYGGGFMTGSATLDIYNAD--IMAAVGNVIVASFQYRVGAFGFLHLAPEMPSEFAEEAPGNVGLWDQALA 212 (571)
T ss_dssp CCSSEEEEEEECCSTTTCCCTTCGGGCCH--HHHHHHTCEEEEECCCCTHHHHCCCGGGSCGGGTTSSCSCHHHHHHHHH
T ss_pred CCCCCeEEEEEeCCCccCCCCcccccchh--hhhhcCCeeEEeecceeccccccccccccccccccCCCCcccchHHHHH
Confidence 357899999999983 44444556653 3445457999999999642 11 110001111 11233469999999
Q ss_pred HHHHHHc---CCCCCCcEEEEecChhHHHHHHHHhh--CCCeeeEEEEcCCccc
Q 004766 549 SEYLISA---GYTQSRKLCIEGGSNGGLLVGACINQ--RPDLFGCALAHVGVMD 597 (732)
Q Consensus 549 ~~~l~~~---~~~d~~~i~i~G~S~GG~l~~~~~~~--~p~~f~a~v~~~p~~d 597 (732)
++|++++ ---||++|-|+|+|+||..+..++.. ...+|+.+|+.++...
T Consensus 213 L~WV~~nI~~FGGDP~~VTl~G~SAGa~sv~~ll~sp~~~~lf~~aI~~Sg~~~ 266 (571)
T d1dx4a_ 213 IRWLKDNAHAFGGNPEWMTLFGESAGSSSVNAQLMSPVTRGLVKRGMMQSGTMN 266 (571)
T ss_dssp HHHHHHSTGGGTEEEEEEEEEEETHHHHHHHHHHHCTTTTTSCCEEEEESCCTT
T ss_pred HHHHHHhhhhhccCCCceEeccccCccceeeeeeccccccccccccceeccccc
Confidence 9999987 22599999999999999999877764 2358999999888654
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.54 E-value=1.4e-05 Score=79.12 Aligned_cols=251 Identities=9% Similarity=0.054 Sum_probs=131.9
Q ss_pred EEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCccc
Q 004766 134 LIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETD 213 (732)
Q Consensus 134 ~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~ 213 (732)
+.+++++|||+. |+.+..+ .+|+.+|..+.......... ...+++|+|||+ |+++....
T Consensus 30 ~e~iAv~pdG~l--~vt~~~~---~~I~~i~p~g~~~~~~~~~~-~~~gla~~~dG~-l~v~~~~~-------------- 88 (302)
T d2p4oa1 30 LENLASAPDGTI--FVTNHEV---GEIVSITPDGNQQIHATVEG-KVSGLAFTSNGD-LVATGWNA-------------- 88 (302)
T ss_dssp EEEEEECTTSCE--EEEETTT---TEEEEECTTCCEEEEEECSS-EEEEEEECTTSC-EEEEEECT--------------
T ss_pred cCCEEECCCCCE--EEEeCCC---CEEEEEeCCCCEEEEEcCCC-CcceEEEcCCCC-eEEEecCC--------------
Confidence 568999999984 3344433 37888886654322112222 347899999998 55554322
Q ss_pred CCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCCC
Q 004766 214 SNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLL 293 (732)
Q Consensus 214 ~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~ 293 (732)
..++.+.+.+.......+...+. ......+.+.+||+.++. ... ...+|.++..++.... +..+ ..
T Consensus 89 ----~~~~~~~~~~~~~~~~~~~~~~~-~~~~n~i~~~~~g~~~v~--~~~---~~~i~~~~~~~~~~~~--~~~~--~~ 154 (302)
T d2p4oa1 89 ----DSIPVVSLVKSDGTVETLLTLPD-AIFLNGITPLSDTQYLTA--DSY---RGAIWLIDVVQPSGSI--WLEH--PM 154 (302)
T ss_dssp ----TSCEEEEEECTTSCEEEEEECTT-CSCEEEEEESSSSEEEEE--ETT---TTEEEEEETTTTEEEE--EEEC--GG
T ss_pred ----ceEEEEEecccccceeeccccCC-ccccceeEEccCCCEEee--ccc---cccceeeeccCCccee--EecC--Cc
Confidence 12344444333223333444333 234557888999976432 222 3457777776532000 0000 00
Q ss_pred CcEEeeecccceEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCc--eEeccCCCCCceeEEEEecCCEEEEEEecCC
Q 004766 294 PFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDW--FEVIPEAERDVLESATAVNLNQMIVSYLSDV 371 (732)
Q Consensus 294 ~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~--~~l~~~~~~~~l~~~~~~~~~~l~~~~~~~g 371 (732)
...............++.+++.+|+.... ..+|++++....... ..+..+. ....++.+.+++.|++....+
T Consensus 155 ~~~~~~~~~~~~~ngi~~~~~~l~~~~~~---~~~i~~~~~~~~~~~~~~~~~~~~--~~pdgia~d~dG~l~va~~~~- 228 (302)
T d2p4oa1 155 LARSNSESVFPAANGLKRFGNFLYVSNTE---KMLLLRIPVDSTDKPGEPEIFVEQ--TNIDDFAFDVEGNLYGATHIY- 228 (302)
T ss_dssp GSCSSTTCCSCSEEEEEEETTEEEEEETT---TTEEEEEEBCTTSCBCCCEEEEES--CCCSSEEEBTTCCEEEECBTT-
T ss_pred cceeeccCcccccccccccCCceeeecCC---CCeEEeccccccccccccccccCC--CCCcceEECCCCCEEEEEcCC-
Confidence 00000000001112245677888876543 457999998764311 1122222 335678888777888776655
Q ss_pred eeEEEEEeCCCCceeeecc--cccceeeEeec---ccCCcEEEEEEec--------CCCCceEEEEECC
Q 004766 372 KYVLQIRDLKNGSLLHQLP--IEIGSVNAISA---RREDSVVFISFTS--------FLIPGIVYQCNLK 427 (732)
Q Consensus 372 ~~~l~~~d~~~g~~~~~l~--~~~g~v~~~~~---s~d~~~l~~~~ss--------~~~p~~~y~~d~~ 427 (732)
.+|++++.+ |+.....+ .+......+.+ ++|+++||++.+. -..|..++++++.
T Consensus 229 -~~V~~i~p~-G~~~~~~~~~~~~~~pt~vafg~~~~D~~~Lyvtt~~g~~~~~~~~~~~~~~~~~~~~ 295 (302)
T d2p4oa1 229 -NSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNGGMFLPPPTGVVPANVVRLEVG 295 (302)
T ss_dssp -CCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECTTSSSCCTTCCCCEEEEEEECS
T ss_pred -CcEEEECCC-CCEEEEEecCCCCCCceEEEEcCCCCCCCEEEEECCCCccCCCcCCcCCCeEEEEeCC
Confidence 478999886 66422332 23222345555 5688888876542 2345566666643
|
| >d2bcea_ c.69.1.1 (A:) Bile-salt activated lipase (cholesterol esterase) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Bile-salt activated lipase (cholesterol esterase) species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.52 E-value=5.1e-08 Score=107.04 Aligned_cols=129 Identities=19% Similarity=0.183 Sum_probs=84.8
Q ss_pred EEEEEEEcCCCC-CCCCccEEEEEcCCC---CccCCCCcChhH----HHHHHhcCcEEEEEcccCCCCCchhHHhccccc
Q 004766 465 IPMFIVSKKNIK-LDGSHPCLLYGYGGF---NISVTPSFSVSR----TILMRHLGAVFCIANIRGGGEYGEEWHKGGALA 536 (732)
Q Consensus 465 i~~~~~~p~~~~-~~~~~P~vv~~hG~~---~~~~~~~~~~~~----~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~ 536 (732)
+..-|+.|+... .+.+.|+||++|||. |+.....+.+.. ..+....+.+||.+|||-|- +| |.......
T Consensus 81 L~LNI~~P~~~~~~~~~lPV~V~iHGG~f~~Gs~~~~~~~~~~~~dg~~la~~~~vIvVt~nYRlg~-~G--Fl~~~~~~ 157 (579)
T d2bcea_ 81 LYLNIWVPQGRKEVSHDLPVMIWIYGGAFLMGASQGANFLSNYLYDGEEIATRGNVIVVTFNYRVGP-LG--FLSTGDSN 157 (579)
T ss_dssp CEEEEEEEECSSSCCCSEEEEEECCCCSEEEC-------CTTGGGCCHHHHHHHTCEEEEECCCCHH-HH--HCCCSSTT
T ss_pred CEEEEEECCCCCCCCCCCcEEEEECCCcccCCCCCCcccCCccccchhhhhccCCEEEEeecccccc-cc--cccccccC
Confidence 556667776532 345789999999983 333333332211 23445467999999999541 11 11111112
Q ss_pred -CCccHHHHHHHHHHHHHHc---CCCCCCcEEEEecChhHHHHHHHHhh--CCCeeeEEEEcCCcc
Q 004766 537 -KKQNCFDDFISASEYLISA---GYTQSRKLCIEGGSNGGLLVGACINQ--RPDLFGCALAHVGVM 596 (732)
Q Consensus 537 -~~~~~~~D~~~~~~~l~~~---~~~d~~~i~i~G~S~GG~l~~~~~~~--~p~~f~a~v~~~p~~ 596 (732)
.+-..+.|.+.|++|++++ ---||++|-|+|+|+||..+...+.. ...+|+.+|+++|..
T Consensus 158 ~~gN~Gl~Dq~~AL~WV~~nI~~FGGDP~~VTl~G~SAGa~sv~~~l~sp~~~gLF~raI~~SGs~ 223 (579)
T d2bcea_ 158 LPGNYGLWDQHMAIAWVKRNIEAFGGDPDQITLFGESAGGASVSLQTLSPYNKGLIKRAISQSGVG 223 (579)
T ss_dssp CCCCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGTTTCSEEEEESCCT
T ss_pred CCccchhhHHHHHHHHHhhhhhhhccCcCceEeeecccccchhhhhhhhhcccCccccceeccCCc
Confidence 2234699999999999887 23599999999999999999877663 356999999998754
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.52 E-value=2.3e-05 Score=77.71 Aligned_cols=153 Identities=13% Similarity=0.085 Sum_probs=88.1
Q ss_pred eEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCCCCcEEeeecccceEEEEEecCCeEEEEeCCCCCCc
Q 004766 248 GHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKY 327 (732)
Q Consensus 248 ~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~ 327 (732)
..+++||.+++..+.++ .|.++|+..+. ..... .........++++++.|+..+. ..
T Consensus 181 ~~~~~~~~~l~s~~~dg-----~i~~~d~~~~~-------------~~~~~-~~~~~~v~~~~~~~~~l~s~s~----d~ 237 (342)
T d2ovrb2 181 YSLQFDGIHVVSGSLDT-----SIRVWDVETGN-------------CIHTL-TGHQSLTSGMELKDNILVSGNA----DS 237 (342)
T ss_dssp EEEEECSSEEEEEETTS-----CEEEEETTTCC-------------EEEEE-CCCCSCEEEEEEETTEEEEEET----TS
T ss_pred ccccCCCCEEEEEeCCC-----eEEEeecccce-------------eeeEe-cccccceeEEecCCCEEEEEcC----CC
Confidence 34566788776554332 37778877632 12222 2222334456777776665443 24
Q ss_pred eEEEEeCCCCCCceEeccCCC-CCceeEEEEecCCEEEEEEecCCeeEEEEEeCCCCceeeecccc-----cceeeEeec
Q 004766 328 KIIRVDLKEPNDWFEVIPEAE-RDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIE-----IGSVNAISA 401 (732)
Q Consensus 328 ~l~~~d~~~~~~~~~l~~~~~-~~~l~~~~~~~~~~l~~~~~~~g~~~l~~~d~~~g~~~~~l~~~-----~g~v~~~~~ 401 (732)
.|..+|+........+..+.. ...+..+.+. +.++++...++ .|++||+.+|+.++.+... .+.|..+++
T Consensus 238 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~s~Dg--~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~ 313 (342)
T d2ovrb2 238 TVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDG--TVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRA 313 (342)
T ss_dssp CEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTS--EEEEEETTTCCEEEEEEECTTGGGTCEEEEEEE
T ss_pred EEEEEecccccccccccccceeeeceeecccC--CCeeEEEcCCC--EEEEEECCCCCEEEEEecccCCCCCCCEEEEEE
Confidence 688888877663333433221 2334444444 34666677774 7999999989876666431 345778888
Q ss_pred ccCCcEEEEEEecCCCCceEEEEECC
Q 004766 402 RREDSVVFISFTSFLIPGIVYQCNLK 427 (732)
Q Consensus 402 s~d~~~l~~~~ss~~~p~~~y~~d~~ 427 (732)
++++..++....+-+.-..++.+|..
T Consensus 314 s~~~~~la~g~~dGt~~~~l~~~Df~ 339 (342)
T d2ovrb2 314 SNTKLVCAVGSRNGTEETKLLVLDFD 339 (342)
T ss_dssp CSSEEEEEEECSSSSSCCEEEEEECC
T ss_pred CCCCCEEEEEeCCCCCeeEEEEEeCC
Confidence 88875444333333445567777764
|
| >d1ex9a_ c.69.1.18 (A:) Lipase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Bacterial lipase domain: Lipase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.52 E-value=1.5e-07 Score=92.66 Aligned_cols=99 Identities=17% Similarity=0.246 Sum_probs=70.8
Q ss_pred CCccEEEEEcCCCCccCCC---CcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCccHHHHHHHHHHHHHHc
Q 004766 479 GSHPCLLYGYGGFNISVTP---SFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISA 555 (732)
Q Consensus 479 ~~~P~vv~~hG~~~~~~~~---~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~ 555 (732)
.++| ||++||..+..... .|. .+...|.++||.|++++++|.+ ..+..+ +++.+.++.+.+.
T Consensus 6 ~~~P-vvlvHG~~g~~~~~~~~yw~-~i~~~L~~~G~~v~~~~~~~~~---~~~~~a----------~~l~~~i~~~~~~ 70 (285)
T d1ex9a_ 6 TKYP-IVLAHGMLGFDNILGVDYWF-GIPSALRRDGAQVYVTEVSQLD---TSEVRG----------EQLLQQVEEIVAL 70 (285)
T ss_dssp CSSC-EEEECCTTCCSEETTEESST-THHHHHHHTTCCEEEECCCSSS---CHHHHH----------HHHHHHHHHHHHH
T ss_pred CCCC-EEEECCCCCCccccchhhHH-HHHHHHHhCCCEEEEeCCCCCC---CcHHHH----------HHHHHHHHHHHHH
Confidence 5678 68889976653322 244 3556677799999999999854 333322 4455555555443
Q ss_pred CCCCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCC
Q 004766 556 GYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVG 594 (732)
Q Consensus 556 ~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p 594 (732)
...+++.++||||||+++..++.++|++++.+|....
T Consensus 71 --~g~~~v~ligHS~GG~~~r~~~~~~p~~v~~lv~i~t 107 (285)
T d1ex9a_ 71 --SGQPKVNLIGHSHGGPTIRYVAAVRPDLIASATSVGA 107 (285)
T ss_dssp --HCCSCEEEEEETTHHHHHHHHHHHCGGGEEEEEEESC
T ss_pred --cCCCeEEEEEECccHHHHHHHHHHCCccceeEEEECC
Confidence 2346899999999999999999999999999986543
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.51 E-value=1.8e-06 Score=88.48 Aligned_cols=127 Identities=8% Similarity=-0.045 Sum_probs=78.0
Q ss_pred EEECCCCcEEEEEEeccCCceEEEEEEECCCCceecccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCCc
Q 004766 137 VSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNL 216 (732)
Q Consensus 137 ~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~~ 216 (732)
..++|||++..+......+...+||++|.++++.+.....+. ...++|||||+.|++....... .....+
T Consensus 25 ~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~-~~~~a~spDg~~i~~~~~~~~~---------~~~g~~ 94 (368)
T d1mdah_ 25 HGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAF-LSLAVAGHSGSDFALASTSFAR---------SAKGKR 94 (368)
T ss_dssp CCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECT-TCEEEECTTSSCEEEEEEEETT---------TTSSSE
T ss_pred cccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCC-CCcceECCCCCEEEEEcccCcc---------cccccc
Confidence 457889987655543332333689999999999765332222 2578999999999987642210 001134
Q ss_pred ccEEEEEECCCCCCCCeEEEecCCCCee-----EEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCC
Q 004766 217 YHEFYYHFLGTKQSEDILCWKDPEHPKY-----IFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSAL 279 (732)
Q Consensus 217 ~~~v~~~~lgt~~~~~~~v~~~~~~~~~-----~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~ 279 (732)
...|.+|+..+......+ ..+..... ...++|||||++|++..... ..++++|++++
T Consensus 95 d~~v~v~D~~t~~~~~~i--~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~----~~v~~~d~~~~ 156 (368)
T d1mdah_ 95 TDYVEVFDPVTFLPIADI--ELPDAPRFSVGPRVHIIGNCASSACLLFFLFGS----SAAAGLSVPGA 156 (368)
T ss_dssp EEEEEEECTTTCCEEEEE--EETTSCSCCBSCCTTSEEECTTSSCEEEEECSS----SCEEEEEETTT
T ss_pred CCeEEEEECCCCcEeeee--cCCccceecccCCccceEECCCCCEEEEEeCCC----CeEEEEECCCC
Confidence 456899998876432221 11111110 12578999999998765322 34788898874
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.50 E-value=4.1e-05 Score=76.26 Aligned_cols=247 Identities=12% Similarity=0.089 Sum_probs=133.2
Q ss_pred EECCCCcEEEEEEeccCCceEEEEEEECCCCceecccc-cceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCCc
Q 004766 138 SVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADAL-SWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNL 216 (732)
Q Consensus 138 ~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~-~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~~ 216 (732)
.+++||++||-.. ...+|+|||+.+++.+.... .......++|+||+ .|+....+
T Consensus 18 c~~~~~~~l~tgs-----~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~~-~l~s~s~D------------------ 73 (355)
T d1nexb2 18 CLQFEDNYVITGA-----DDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTD------------------ 73 (355)
T ss_dssp EEEEETTEEEEEE-----TTTEEEEEETTTTEEEEEEECCSSCEEEEEEETTT-EEEEEETT------------------
T ss_pred EEEECCCEEEEEe-----CCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCCC-EEEEEecc------------------
Confidence 3667899887442 22489999999998653221 12235789999875 55544322
Q ss_pred ccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCccc---------cc
Q 004766 217 YHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEG---------FK 287 (732)
Q Consensus 217 ~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~---------~~ 287 (732)
..|+.|++...... ................+++++++++....++ .+.++++.+....... ..
T Consensus 74 -~~i~iw~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-----~i~iw~~~~~~~~~~~~~~~~~~~~~~ 145 (355)
T d1nexb2 74 -RTVRVWDIKKGCCT--HVFEGHNSTVRCLDIVEYKNIKYIVTGSRDN-----TLHVWKLPKESSVPDHGEEHDYPLVFH 145 (355)
T ss_dssp -CCEEEEETTTTEEE--EEECCCSSCEEEEEEEEETTEEEEEEEETTS-----EEEEEECCC-----------CCCEEES
T ss_pred -cccccccccccccc--cccccccccccccccccccccceeeeecCCC-----cEEEEEccCCceeccccccceecccee
Confidence 35778887654321 1222222222334566789999887765432 3666776553211000 00
Q ss_pred ccCCCCCcEEeeecccceEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecCCEEEEEE
Q 004766 288 KRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSY 367 (732)
Q Consensus 288 ~~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~~l~~~~ 367 (732)
.....................+.++++.++.... ...+..+|+.++......... ........+++++..++..
T Consensus 146 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~----d~~i~~~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 219 (355)
T d1nexb2 146 TPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSY----DNTLIVWDVAQMKCLYILSGH--TDRIYSTIYDHERKRCISA 219 (355)
T ss_dssp CTTTCTTEEEEEECCSSCEEEEEEETTEEEEEET----TSCEEEEETTTTEEEEEECCC--SSCEEEEEEETTTTEEEEE
T ss_pred ccccccceeeeeeeccccccccccccceeeeecc----cceeeeeecccccceeeeecc--ccccccccccccceeeecc
Confidence 0000000000111111122335566766654333 235788888776522222222 3455667777655566666
Q ss_pred ecCCeeEEEEEeCCCCceeeecccccceeeEeecccCCcEEEEEEecCCCCceEEEEECCCCC
Q 004766 368 LSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 430 (732)
Q Consensus 368 ~~~g~~~l~~~d~~~g~~~~~l~~~~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~~ 430 (732)
..++ .|++|+..++..+..+..+...+..+.++ ++.++ +.+. -..+..+|+.++.
T Consensus 220 ~~d~--~i~i~d~~~~~~~~~~~~h~~~v~~~~~~--~~~l~-~~~~---dg~i~iwd~~~~~ 274 (355)
T d1nexb2 220 SMDT--TIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLV-SAAA---DGSIRGWDANDYS 274 (355)
T ss_dssp ETTS--CEEEEETTTCCEEEEECCCSSCCCEEEEC--SSEEE-EECT---TSEEEEEETTTCC
T ss_pred cccc--eEEeeeccccccccccccccccccccccc--cceee-eeec---ccccccccccccc
Confidence 6664 68899998887766666555566666654 44443 3332 3578899988774
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=98.49 E-value=4.7e-05 Score=75.59 Aligned_cols=245 Identities=9% Similarity=0.021 Sum_probs=117.3
Q ss_pred cEEEEEEeccCCceEEEEEEECCCCce---ecccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCCcccEE
Q 004766 144 KYLAYALSYSGSDWATIKLMRIEDQIV---EADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEF 220 (732)
Q Consensus 144 ~~la~~~~~~G~e~~~i~v~dl~~g~~---~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~~~~~v 220 (732)
|+..|+.+..+ .+|+||++.+... +..........+++|||||++||.+.. ....|
T Consensus 3 ~~~v~v~~~~~---~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~------------------~d~~i 61 (333)
T d1ri6a_ 3 KQTVYIASPES---QQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVR------------------PEFRV 61 (333)
T ss_dssp EEEEEEEEGGG---TEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEET------------------TTTEE
T ss_pred ceEEEEECCCC---CcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEEC------------------CCCeE
Confidence 56677765333 4899999865431 221111123478999999999976642 22357
Q ss_pred EEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCCCCcEEeee
Q 004766 221 YYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLID 300 (732)
Q Consensus 221 ~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l~~ 300 (732)
..|++.+.......+..... ......+++||||++|+...... ..+.+++..... .........
T Consensus 62 ~~~~i~~~~~~~~~~~~~~~-~~~p~~l~~spDg~~l~v~~~~~----~~v~~~~~~~~~-----------~~~~~~~~~ 125 (333)
T d1ri6a_ 62 LAYRIAPDDGALTFAAESAL-PGSLTHISTDHQGQFVFVGSYNA----GNVSVTRLEDGL-----------PVGVVDVVE 125 (333)
T ss_dssp EEEEECTTTCCEEEEEEEEC-SSCCSEEEECTTSSEEEEEETTT----TEEEEEEEETTE-----------EEEEEEEEC
T ss_pred EEEEEeCCCCcEEEeeeccc-CCCceEEEEcCCCCEEeecccCC----Cceeeecccccc-----------ceecccccC
Confidence 77777654333222222211 11123689999999987664322 224444433311 000111111
Q ss_pred cc-cceEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceE----eccCCCCCceeEEEEecCC-EEEEEEecCCeeE
Q 004766 301 GF-DAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFE----VIPEAERDVLESATAVNLN-QMIVSYLSDVKYV 374 (732)
Q Consensus 301 ~~-~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~----l~~~~~~~~l~~~~~~~~~-~l~~~~~~~g~~~ 374 (732)
.. ......++||++.++...... ..+..++......... ............+.+++++ .++......+...
T Consensus 126 ~~~~~~~v~~s~d~~~~~~~~~~~---~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~ 202 (333)
T d1ri6a_ 126 GLDGCHSANISPDNRTLWVPALKQ---DRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVD 202 (333)
T ss_dssp CCTTBCCCEECTTSSEEEEEEGGG---TEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEE
T ss_pred CCccceEEEeeecceeeecccccc---ceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceE
Confidence 11 111124889998877655432 3455555544321110 1111112334566776643 4444544444344
Q ss_pred EEEEeCCCCce--eeecc-cc-----cceeeEeecccCCcEEEEEEecCCCCceEEEEECCCC
Q 004766 375 LQIRDLKNGSL--LHQLP-IE-----IGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTE 429 (732)
Q Consensus 375 l~~~d~~~g~~--~~~l~-~~-----~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~ 429 (732)
++.++...... ...+. .+ ......+.+++|++.+++.... .....+|..+..++
T Consensus 203 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~-~~~~~~~~~~~~~~ 264 (333)
T d1ri6a_ 203 VWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRT-ASLITVFSVSEDGS 264 (333)
T ss_dssp EEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETT-TTEEEEEEECTTSC
T ss_pred EEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeeccc-CCeEEEEEEcCCCC
Confidence 44443332211 01111 11 1223345678888876654433 33344555554443
|
| >d2dsta1 c.69.1.39 (A:2-123) Hypothetical protein TTHA1544 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: TTHA1544-like domain: Hypothetical protein TTHA1544 species: Thermus thermophilus [TaxId: 274]
Probab=98.48 E-value=2.1e-07 Score=77.93 Aligned_cols=99 Identities=11% Similarity=-0.027 Sum_probs=69.5
Q ss_pred EEccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccc
Q 004766 456 VPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGAL 535 (732)
Q Consensus 456 ~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~ 535 (732)
|..-+| ++|.+... |+.|.||++||.+.. |. ..|. ++|.|+++|.||.|...
T Consensus 5 ~~~~~G-~~l~y~~~--------G~G~pvlllHG~~~~-----w~----~~L~-~~yrvi~~DlpG~G~S~--------- 56 (122)
T d2dsta1 5 YLHLYG-LNLVFDRV--------GKGPPVLLVAEEASR-----WP----EALP-EGYAFYLLDLPGYGRTE--------- 56 (122)
T ss_dssp EEEETT-EEEEEEEE--------CCSSEEEEESSSGGG-----CC----SCCC-TTSEEEEECCTTSTTCC---------
T ss_pred EEEECC-EEEEEEEE--------cCCCcEEEEeccccc-----cc----cccc-CCeEEEEEeccccCCCC---------
Confidence 334578 88877654 567889999995332 22 3356 89999999999987542
Q ss_pred cCCccHHHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhhCCCe
Q 004766 536 AKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDL 585 (732)
Q Consensus 536 ~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~ 585 (732)
....+.+++.+.+..+++. .+-++..++|+|+||.++..++...+..
T Consensus 57 -~p~~s~~~~a~~i~~ll~~--L~i~~~~viG~S~Gg~ia~~laa~~~~~ 103 (122)
T d2dsta1 57 -GPRMAPEELAHFVAGFAVM--MNLGAPWVLLRGLGLALGPHLEALGLRA 103 (122)
T ss_dssp -CCCCCHHHHHHHHHHHHHH--TTCCSCEEEECGGGGGGHHHHHHTTCCE
T ss_pred -CcccccchhHHHHHHHHHH--hCCCCcEEEEeCccHHHHHHHHhhcccc
Confidence 1234556666666666655 2345789999999999999998876653
|
| >d2h7xa1 c.69.1.22 (A:9-291) Picromycin polyketide synthase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterase domain of polypeptide, polyketide and fatty acid synthases domain: Picromycin polyketide synthase species: Streptomyces venezuelae [TaxId: 54571]
Probab=98.46 E-value=2.4e-08 Score=98.85 Aligned_cols=211 Identities=11% Similarity=-0.010 Sum_probs=110.3
Q ss_pred CCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCccHHHHHHHH-HHHHHHcC
Q 004766 478 DGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISA-SEYLISAG 556 (732)
Q Consensus 478 ~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~-~~~l~~~~ 556 (732)
.+..|.|+.+||.........|.. +...|. .++.|+.++.+|.|..... .......+++++.+. ++.+.+.
T Consensus 57 ~~~~~~l~c~~~~~~~g~~~~y~~-la~~L~-~~~~V~al~~pG~~~~~~~-----~~~~~~~s~~~~a~~~~~~i~~~- 128 (283)
T d2h7xa1 57 AEGRAVLVGCTGTAANGGPHEFLR-LSTSFQ-EERDFLAVPLPGYGTGTGT-----GTALLPADLDTALDAQARAILRA- 128 (283)
T ss_dssp -CCCCEEEEECCCCTTCSTTTTHH-HHHTTT-TTCCEEEECCTTCCBC--------CBCCEESSHHHHHHHHHHHHHHH-
T ss_pred CCCCceEEEeCCCCCCCCHHHHHH-HHHhcC-CCceEEEEeCCCCCCCCCC-----ccccccCCHHHHHHHHHHHHHHh-
Confidence 356789999998543332334543 456677 6899999999996532111 011112345666553 3444433
Q ss_pred CCCCCcEEEEecChhHHHHHHHHhhC----CCeeeEEEEcCCccccccc--ccCC--CCCcc-ccccCCCCCHHHHH---
Q 004766 557 YTQSRKLCIEGGSNGGLLVGACINQR----PDLFGCALAHVGVMDMLRY--HKFT--IGHAW-VSDFGCSEEEEEFY--- 624 (732)
Q Consensus 557 ~~d~~~i~i~G~S~GG~l~~~~~~~~----p~~f~a~v~~~p~~d~~~~--~~~~--~~~~~-~~~~g~p~~~~~~~--- 624 (732)
.....+.++|||+||+++..++.+. ++...++|+..+..-.... .... ..... ..+. .+.+.....
T Consensus 129 -~~~~P~vL~GhS~GG~vA~e~A~~l~~~~g~~v~~LvL~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~a~~ 206 (283)
T d2h7xa1 129 -AGDAPVVLLGHSGGALLAHELAFRLERAHGAPPAGIVLVDPYPPGHQEPIEVWSRQLGEGLFAGEL-EPMSDARLLAMG 206 (283)
T ss_dssp -HTTSCEEEEEETHHHHHHHHHHHHHHHHHSCCCSEEEEESCCCTTCCHHHHHTHHHHHHHHHHTCS-SCCCHHHHHHHH
T ss_pred -cCCCceEEEEeccchHHHHHHHHhhHHHcCCCceEEEEecCCccccccchhhhhhhhHHHhhcccc-cccccHHHHHHH
Confidence 2235799999999999998888764 3456666654432211000 0000 00000 0011 111111111
Q ss_pred -HHHhcCcccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCCchHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEeCCCCCC
Q 004766 625 -WLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHG 703 (732)
Q Consensus 625 -~~~~~sp~~~~~~~~~~~~~~~~~~~p~Li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gH~ 703 (732)
++..+.. .... .+..|+|+++|.+|..++......+.+.+ ...+.++.+++ ||.
T Consensus 207 ~~~~~~~~-~~~~----------~~~~Pvl~i~g~~d~~~~~~~~~~w~~~~-------------~~~~~~~~v~G-~H~ 261 (283)
T d2h7xa1 207 RYARFLAG-PRPG----------RSSAPVLLVRASEPLGDWQEERGDWRAHW-------------DLPHTVADVPG-DHF 261 (283)
T ss_dssp HHHHHHHS-CCCC----------CCCSCEEEEEESSCSSCCCGGGCCCSCCC-------------SSCSEEEEESS-CTT
T ss_pred HHHHHHhh-cccc----------ccCCCeEEEEeCCCCCCCHHHHHHHHHhC-------------CCCcEEEEEcC-CCc
Confidence 1111111 1112 37889999999999999887654442211 34567788876 886
Q ss_pred CCCchHHHHHHHHHHHHHHHH
Q 004766 704 VGLPTQKMIDEAADRYGFMAK 724 (732)
Q Consensus 704 ~~~~~~~~~~~~~~~~~fl~~ 724 (732)
.....+ .....+.+-+||..
T Consensus 262 ~ml~e~-~~~vA~~i~~~L~~ 281 (283)
T d2h7xa1 262 TMMRDH-APAVAEAVLSWLDA 281 (283)
T ss_dssp HHHHTT-HHHHHHHHHHHHHH
T ss_pred ccccCC-HHHHHHHHHHHHHh
Confidence 432111 12334456777764
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.46 E-value=7.3e-06 Score=81.33 Aligned_cols=61 Identities=8% Similarity=0.118 Sum_probs=41.7
Q ss_pred ceeEEEEecCCEEEEEEecCCeeEEEEEeCCCCceeeecccccceeeEeecccCCcEEEEEEec
Q 004766 351 VLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTS 414 (732)
Q Consensus 351 ~l~~~~~~~~~~l~~~~~~~g~~~l~~~d~~~g~~~~~l~~~~g~v~~~~~s~d~~~l~~~~ss 414 (732)
.+..+.+++++.++++...|| .|++||+++++.+..+... .....++++++++.+++..++
T Consensus 253 ~v~~l~~sp~~~~lasg~~Dg--~v~vWD~~~~~~l~~~~~~-~~~~~~~~s~~~~~l~~a~sd 313 (342)
T d1yfqa_ 253 PVNSIEFSPRHKFLYTAGSDG--IISCWNLQTRKKIKNFAKF-NEDSVVKIACSDNILCLATSD 313 (342)
T ss_dssp CEEEEEECTTTCCEEEEETTS--CEEEEETTTTEEEEECCCC-SSSEEEEEEECSSEEEEEEEC
T ss_pred cceeEEecCCccEEEEECCCC--EEEEEECCCCcEEEEecCC-CCCEEEEEEeCCCEEEEEEcC
Confidence 456788888777888888885 6899999988766555432 122235566788877665544
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.43 E-value=4e-05 Score=76.19 Aligned_cols=247 Identities=9% Similarity=0.085 Sum_probs=137.7
Q ss_pred EeEEECCCCcEEEEEEeccCC----ceEEEEEEECCCCceeccc----cc-ceeeeeEEEEeCCcEEEEEEecCCCCCCC
Q 004766 135 IKVSVSEDAKYLAYALSYSGS----DWATIKLMRIEDQIVEADA----LS-WFKFSSIAWTHDSKGFFYSRYPAPKEGKD 205 (732)
Q Consensus 135 ~~~~~SPDG~~la~~~~~~G~----e~~~i~v~dl~~g~~~~~~----~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~ 205 (732)
.+++|.|||+.. ++ +..+. ...+|+.+|.+++...... .. .....++++.+||+.|+++.
T Consensus 21 EGpa~d~dG~ly-~~-~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad--------- 89 (314)
T d1pjxa_ 21 EGPVFDKNGDFY-IV-APEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVAD--------- 89 (314)
T ss_dssp EEEEECTTSCEE-EE-ETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEE---------
T ss_pred eEeEEeCCCCEE-EE-ECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEE---------
Confidence 478999999843 33 22211 1236899999988743211 11 11135789999998777652
Q ss_pred CCCCCcccCCcccEEEEEECCCCCCCCeEEEecCCCCe--eEEEeEEecCCcEEEEEEecCC-----------cceEEEE
Q 004766 206 MDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPK--YIFSGHVTEDGQYLVMCIEENC-----------DPVNKVY 272 (732)
Q Consensus 206 ~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~--~~~~~~~SpDg~~l~~~~~~~~-----------~~~~~l~ 272 (732)
....+.+.+..+.... ++....+... ...++.+.+||.. +++..... .....+|
T Consensus 90 ----------~~~~i~~~~~~g~~~~--~~~~~~~g~~~~~pndl~~d~~G~l-yvtd~~~~~~~~~~~~~~~~~~G~v~ 156 (314)
T d1pjxa_ 90 ----------MRLGLLVVQTDGTFEE--IAKKDSEGRRMQGCNDCAFDYEGNL-WITAPAGEVAPADYTRSMQEKFGSIY 156 (314)
T ss_dssp ----------TTTEEEEEETTSCEEE--CCSBCTTSCBCBCCCEEEECTTSCE-EEEECBCBCTTSCCCBTTSSSCEEEE
T ss_pred ----------CCCeEEEEeCCCcEEE--EEeccccccccCCCcEEEECCCCCE-EEecCccCcccccccceeccCCceEE
Confidence 1234667666543211 1111111111 1135788999964 34432110 1235688
Q ss_pred EEeCCCCCCCcccccccCCCCCcEEeeecccce-EEEEEecCC----eEEEEeCCCCCCceEEEEeCCCCCC--ceEec-
Q 004766 273 YCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQ-YEVIANDDT----VFTFLTNKDAPKYKIIRVDLKEPND--WFEVI- 344 (732)
Q Consensus 273 ~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~s~dg~----~l~~~s~~~~~~~~l~~~d~~~~~~--~~~l~- 344 (732)
.++.++. ...+..+.... -..|+++++ .||+. + ....+|+++|+..... ...++
T Consensus 157 ~~~~dg~---------------~~~~~~~~~~pNGi~~~~d~d~~~~~lyv~-d--~~~~~i~~~d~~~~g~~~~~~~~~ 218 (314)
T d1pjxa_ 157 CFTTDGQ---------------MIQVDTAFQFPNGIAVRHMNDGRPYQLIVA-E--TPTKKLWSYDIKGPAKIENKKVWG 218 (314)
T ss_dssp EECTTSC---------------EEEEEEEESSEEEEEEEECTTSCEEEEEEE-E--TTTTEEEEEEEEETTEEEEEEEEE
T ss_pred EEeecCc---------------eeEeeCCcceeeeeEECCCCCcceeEEEEE-e--ecccceEEeeccCccccceeeEEE
Confidence 8876542 22333322211 124788765 45553 3 2346799988754431 11222
Q ss_pred --cCCCCCceeEEEEecCCEEEEEEecCCeeEEEEEeCCCCceeeecccccceeeEeecccCCcEEEEEEecCCCCceEE
Q 004766 345 --PEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVY 422 (732)
Q Consensus 345 --~~~~~~~l~~~~~~~~~~l~~~~~~~g~~~l~~~d~~~g~~~~~l~~~~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y 422 (732)
+........++.+..++.|++..... .+|+++|.++|+....+..|....+.+++.+|+++|+++-+. -.++|
T Consensus 219 ~~~~~~~~~pdGiavD~~GnlyVa~~~~--g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~---~g~i~ 293 (314)
T d1pjxa_ 219 HIPGTHEGGADGMDFDEDNNLLVANWGS--SHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHE---NNAVW 293 (314)
T ss_dssp ECCCCSSCEEEEEEEBTTCCEEEEEETT--TEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETT---TTEEE
T ss_pred EccccccccceeeEEecCCcEEEEEcCC--CEEEEEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECC---CCcEE
Confidence 11112234577887767888776544 589999998666555666664455677788888888876543 36899
Q ss_pred EEECCC
Q 004766 423 QCNLKT 428 (732)
Q Consensus 423 ~~d~~~ 428 (732)
++++..
T Consensus 294 ~~~~~~ 299 (314)
T d1pjxa_ 294 KFEWQR 299 (314)
T ss_dssp EEECSS
T ss_pred EEECCC
Confidence 988753
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=98.38 E-value=1.6e-05 Score=78.07 Aligned_cols=194 Identities=16% Similarity=0.083 Sum_probs=112.0
Q ss_pred EEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCccc
Q 004766 134 LIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETD 213 (732)
Q Consensus 134 ~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~ 213 (732)
+..+.+||||+.++...+ ..+.+++......... . .....++|+||++.|+....+
T Consensus 102 ~~~~~~s~~g~~~~~~~~------~~i~~~~~~~~~~~~~--~-~~~~~~~~s~~~~~l~~g~~d--------------- 157 (299)
T d1nr0a2 102 PLGLAVSADGDIAVAACY------KHIAIYSHGKLTEVPI--S-YNSSCVALSNDKQFVAVGGQD--------------- 157 (299)
T ss_dssp EEEEEECTTSSCEEEEES------SEEEEEETTEEEEEEC--S-SCEEEEEECTTSCEEEEEETT---------------
T ss_pred cccccccccccccccccc------cccccccccccccccc--c-ccccccccccccccccccccc---------------
Confidence 557889999998776532 2578888543222211 1 123678999999988876432
Q ss_pred CCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCCC
Q 004766 214 SNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLL 293 (732)
Q Consensus 214 ~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~ 293 (732)
..|..|++.++......... +...+..++|+|+|++|+....++ .++++++.++... .
T Consensus 158 ----g~i~~~d~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~l~~~~~d~-----~i~~~~~~~~~~~----------~ 215 (299)
T d1nr0a2 158 ----SKVHVYKLSGASVSEVKTIV---HPAEITSVAFSNNGAFLVATDQSR-----KVIPYSVANNFEL----------A 215 (299)
T ss_dssp ----SEEEEEEEETTEEEEEEEEE---CSSCEEEEEECTTSSEEEEEETTS-----CEEEEEGGGTTEE----------S
T ss_pred ----cccccccccccccccccccc---cccccccccccccccccccccccc-----ccccccccccccc----------c
Confidence 35788887654322111111 223456889999999987665432 3788887763210 0
Q ss_pred CcEEeeecccceE-EEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEecc-CCCCCceeEEEEecCCEEEEEEecCC
Q 004766 294 PFVKLIDGFDAQY-EVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIP-EAERDVLESATAVNLNQMIVSYLSDV 371 (732)
Q Consensus 294 ~~~~l~~~~~~~~-~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~-~~~~~~l~~~~~~~~~~l~~~~~~~g 371 (732)
....+........ ..|+|+|+.|+..+.+ ..|..+|+.++.....+.. ......+..+.+.+ +..+++...|+
T Consensus 216 ~~~~~~~h~~~v~~l~~s~~~~~l~sgs~d----g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~s~D~ 290 (299)
T d1nr0a2 216 HTNSWTFHTAKVACVSWSPDNVRLATGSLD----NSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLN-ETTIVSAGQDS 290 (299)
T ss_dssp CCCCCCCCSSCEEEEEECTTSSEEEEEETT----SCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEE-TTEEEEEETTS
T ss_pred ccccccccccccccccccccccceEEEcCC----CEEEEEECCCCCcceEEEecCCCCCcEEEEEECC-CCEEEEEeCCC
Confidence 0111111111112 2488999887765443 3588889887652222222 22234566666655 44566666774
Q ss_pred eeEEEEEeC
Q 004766 372 KYVLQIRDL 380 (732)
Q Consensus 372 ~~~l~~~d~ 380 (732)
.|.+||+
T Consensus 291 --~i~iWdl 297 (299)
T d1nr0a2 291 --NIKFWNV 297 (299)
T ss_dssp --CEEEEEC
T ss_pred --EEEEEec
Confidence 6888886
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.34 E-value=4.8e-05 Score=74.25 Aligned_cols=193 Identities=10% Similarity=0.018 Sum_probs=115.9
Q ss_pred EEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecccc-cceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCc
Q 004766 133 ALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADAL-SWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTE 211 (732)
Q Consensus 133 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~-~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~ 211 (732)
.+....++|+++.++.... ...+++||+.+++.+.... .......++|+||++.|+....+.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~-----d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~------------ 165 (317)
T d1vyhc1 103 NVSSVSIMPNGDHIVSASR-----DKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQ------------ 165 (317)
T ss_dssp CEEEEEECSSSSEEEEEET-----TSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTS------------
T ss_pred cceeeeccCCCceEEeecc-----CcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCCC------------
Confidence 3567889999999876532 2478999999987543211 111246789999999887765332
Q ss_pred ccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCc--------------------EEEEEEecCCcceEEE
Q 004766 212 TDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQ--------------------YLVMCIEENCDPVNKV 271 (732)
Q Consensus 212 ~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~--------------------~l~~~~~~~~~~~~~l 271 (732)
.|+.+++.+... ...+. ........+.++|++. .++.... ...+
T Consensus 166 -------~v~~~~~~~~~~--~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~i 229 (317)
T d1vyhc1 166 -------TVRVWVVATKEC--KAELR--EHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSR-----DKTI 229 (317)
T ss_dssp -------CEEEEETTTCCE--EEEEC--CCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEET-----TSEE
T ss_pred -------eEEEEeecccee--eEEEe--cCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccC-----CCEE
Confidence 467777765431 11121 1222334555555543 3322221 2347
Q ss_pred EEEeCCCCCCCcccccccCCCCCcEEeeecccceE-EEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCC
Q 004766 272 YYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQY-EVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERD 350 (732)
Q Consensus 272 ~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~ 350 (732)
.++++.++. +...+........ ..++|+|+.|+..+. ++.|..+|+.+++....+-.+. .
T Consensus 230 ~~~~~~~~~-------------~~~~~~~~~~~v~~~~~~~~~~~l~s~~~----dg~i~iwd~~~~~~~~~~~~h~--~ 290 (317)
T d1vyhc1 230 KMWDVSTGM-------------CLMTLVGHDNWVRGVLFHSGGKFILSCAD----DKTLRVWDYKNKRCMKTLNAHE--H 290 (317)
T ss_dssp EEEETTTTE-------------EEEEEECCSSCEEEEEECSSSSCEEEEET----TTEEEEECCTTSCCCEEEECCS--S
T ss_pred EEEECCCCc-------------EEEEEeCCCCCEEEEEECCCCCEEEEEEC----CCeEEEEECCCCcEEEEEcCCC--C
Confidence 777877632 1222322222111 258898887775443 3468899998877556665554 5
Q ss_pred ceeEEEEecCCEEEEEEecCCeeEEEEEe
Q 004766 351 VLESATAVNLNQMIVSYLSDVKYVLQIRD 379 (732)
Q Consensus 351 ~l~~~~~~~~~~l~~~~~~~g~~~l~~~d 379 (732)
.+..+.+++++.++++...|+ .|++||
T Consensus 291 ~V~~~~~s~~~~~l~s~s~Dg--~i~iWd 317 (317)
T d1vyhc1 291 FVTSLDFHKTAPYVVTGSVDQ--TVKVWE 317 (317)
T ss_dssp CEEEEEECSSSSCEEEEETTS--EEEEEC
T ss_pred CEEEEEEcCCCCEEEEEeCCC--eEEEeC
Confidence 688899988767777777775 577775
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=98.31 E-value=8.6e-06 Score=81.50 Aligned_cols=78 Identities=8% Similarity=-0.023 Sum_probs=52.0
Q ss_pred EEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecCCEEEEEEecCCeeEEEEEeCCCCceeee
Q 004766 309 IANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQ 388 (732)
Q Consensus 309 ~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~~l~~~~~~~g~~~l~~~d~~~g~~~~~ 388 (732)
+++++..+++.. ...+..+|+.+++. ...++.. ..+.++.+++|+..++....+ ..|.+||+++++.+..
T Consensus 259 ~~~~~~~~~~~~-----~~~v~v~d~~~~~~-~~~~~~~--~~~~~va~s~DG~~l~v~~~d--~~v~v~D~~t~~~i~~ 328 (346)
T d1jmxb_ 259 RSPKDPNQIYGV-----LNRLAKYDLKQRKL-IKAANLD--HTYYCVAFDKKGDKLYLGGTF--NDLAVFNPDTLEKVKN 328 (346)
T ss_dssp ECSSCTTEEEEE-----ESEEEEEETTTTEE-EEEEECS--SCCCEEEECSSSSCEEEESBS--SEEEEEETTTTEEEEE
T ss_pred EeCCCCEEEEec-----CCeEEEEECCCCcE-EEEEcCC--CCEEEEEEcCCCCEEEEEeCC--CcEEEEECccCCEEEE
Confidence 556666555432 23588889888762 2223332 346789999876655555566 4799999999998888
Q ss_pred ccccccee
Q 004766 389 LPIEIGSV 396 (732)
Q Consensus 389 l~~~~g~v 396 (732)
|.+|.+..
T Consensus 329 i~~p~g~~ 336 (346)
T d1jmxb_ 329 IKLPGGDM 336 (346)
T ss_dssp EECSSSCC
T ss_pred EECCCCCc
Confidence 98876554
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.31 E-value=0.00022 Score=70.71 Aligned_cols=234 Identities=11% Similarity=0.084 Sum_probs=126.3
Q ss_pred EEEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecccccc----------------e------eeeeEEEEeCC
Q 004766 132 AALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSW----------------F------KFSSIAWTHDS 189 (732)
Q Consensus 132 ~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~~~----------------~------~~~~~~WspDg 189 (732)
.......++|++++++.... ...|++||+.++..+...... . ...-..+.+++
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~-----d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 171 (355)
T d1nexb2 97 VRCLDIVEYKNIKYIVTGSR-----DNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHG 171 (355)
T ss_dssp EEEEEEEEETTEEEEEEEET-----TSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEET
T ss_pred ccccccccccccceeeeecC-----CCcEEEEEccCCceeccccccceeccceeccccccceeeeeeecccccccccccc
Confidence 33455678899998887642 247899999876532110000 0 00123466677
Q ss_pred cEEEEEEecCCCCCCCCCCCCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceE
Q 004766 190 KGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVN 269 (732)
Q Consensus 190 ~~l~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~ 269 (732)
+.++....+ ..+..+++.+.. .+..... .........++|++++++....++
T Consensus 172 ~~~~~~~~d-------------------~~i~~~d~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~d~----- 223 (355)
T d1nexb2 172 NIVVSGSYD-------------------NTLIVWDVAQMK--CLYILSG--HTDRIYSTIYDHERKRCISASMDT----- 223 (355)
T ss_dssp TEEEEEETT-------------------SCEEEEETTTTE--EEEEECC--CSSCEEEEEEETTTTEEEEEETTS-----
T ss_pred ceeeeeccc-------------------ceeeeeeccccc--ceeeeec--cccccccccccccceeeecccccc-----
Confidence 766665432 357788876542 1122222 223456788999999998766443
Q ss_pred EEEEEeCCCCCCCcccccccCCCCCcEEeeecccceEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCC
Q 004766 270 KVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAER 349 (732)
Q Consensus 270 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~ 349 (732)
.+.++++.++. ....+. +....+..++.+++.|+..+. +..|..+|+.+.. ..+..+..
T Consensus 224 ~i~i~d~~~~~-------------~~~~~~-~h~~~v~~~~~~~~~l~~~~~----dg~i~iwd~~~~~--~~~~~~~~- 282 (355)
T d1nexb2 224 TIRIWDLENGE-------------LMYTLQ-GHTALVGLLRLSDKFLVSAAA----DGSIRGWDANDYS--RKFSYHHT- 282 (355)
T ss_dssp CEEEEETTTCC-------------EEEEEC-CCSSCCCEEEECSSEEEEECT----TSEEEEEETTTCC--EEEEEECT-
T ss_pred eEEeeeccccc-------------cccccc-cccccccccccccceeeeeec----ccccccccccccc--eecccccC-
Confidence 37788887642 122222 222222334556666554332 3468888988765 33333331
Q ss_pred CceeEEEEecCCEEEEEEecCCeeEEEEEeCCCCceeee-cccccceeeEeecccCCcEEEEEEecCCCCceEEEEE
Q 004766 350 DVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQ-LPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCN 425 (732)
Q Consensus 350 ~~l~~~~~~~~~~l~~~~~~~g~~~l~~~d~~~g~~~~~-l~~~~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d 425 (732)
....-..+.+++.+++... ++ .|++||+.+|+.+.. +..+.+.|..++++++ .++++.+. ..--.++.+|
T Consensus 283 ~~~~~~~~~~~~~~l~~g~-d~--~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~~--~~~~~~s~-dg~~~l~~~d 353 (355)
T d1nexb2 283 NLSAITTFYVSDNILVSGS-EN--QFNIYNLRSGKLVHANILKDADQIWSVNFKGK--TLVAAVEK-DGQSFLEILD 353 (355)
T ss_dssp TCCCCCEEEECSSEEEEEE-TT--EEEEEETTTCCBCCSCTTTTCSEEEEEEEETT--EEEEEEES-SSCEEEEEEE
T ss_pred CceEEEEEcCCCCEEEEEe-CC--EEEEEECCCCCEEEEEecCCCCCEEEEEEcCC--eEEEEEEC-CCcEEEEEEe
Confidence 2222223344466766665 43 699999998887543 3334566777776653 45444333 3223455555
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.29 E-value=0.00013 Score=72.06 Aligned_cols=96 Identities=8% Similarity=0.036 Sum_probs=64.6
Q ss_pred ceEEEEeCCCCCCceEeccCCCCCceeEEEEecCCEEEEEEecCCeeEEEEEeCCCCceeeecccc--cceeeEeecccC
Q 004766 327 YKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIE--IGSVNAISARRE 404 (732)
Q Consensus 327 ~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~~l~~~~~~~g~~~l~~~d~~~g~~~~~l~~~--~g~v~~~~~s~d 404 (732)
..+..+|+.++.....+..+. ..+..+.+++++.++++...++ .|++|++...+....+... ...+..+.++++
T Consensus 206 ~~v~i~d~~~~~~~~~~~~h~--~~i~~v~~~p~~~~l~s~s~d~--~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 281 (340)
T d1tbga_ 206 ASAKLWDVREGMCRQTFTGHE--SDINAICFFPNGNAFATGSDDA--TCRLFDLRADQELMTYSHDNIICGITSVSFSKS 281 (340)
T ss_dssp TEEEEEETTTTEEEEEECCCS--SCEEEEEECTTSSEEEEEETTS--CEEEEETTTTEEEEEECCTTCCSCEEEEEECSS
T ss_pred ceEEEEECCCCcEEEEEeCCC--CCeEEEEECCCCCEEEEEeCCC--eEEEEeecccccccccccccccCceEEEEECCC
Confidence 467788887766344444443 5688899988667777777774 6888898766554444332 445777888999
Q ss_pred CcEEEEEEecCCCCceEEEEECCCCC
Q 004766 405 DSVVFISFTSFLIPGIVYQCNLKTET 430 (732)
Q Consensus 405 ~~~l~~~~ss~~~p~~~y~~d~~~~~ 430 (732)
++.++..... ..++.||+.+++
T Consensus 282 ~~~l~~g~~d----g~i~iwd~~~~~ 303 (340)
T d1tbga_ 282 GRLLLAGYDD----FNCNVWDALKAD 303 (340)
T ss_dssp SCEEEEEETT----SCEEEEETTTCC
T ss_pred CCEEEEEECC----CEEEEEECCCCc
Confidence 8866543322 568899988775
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.17 E-value=0.00082 Score=69.57 Aligned_cols=257 Identities=12% Similarity=0.074 Sum_probs=140.5
Q ss_pred eCCEEEEEEEcCCCCeeEEEEEeCCCCCceEEeCCCCcCCCCCEEEEeEEECCCCcEEEEEEeccC-----------Cce
Q 004766 89 RGNKYFYFHNTGLQPQSVLYVQDSLDAKAKVLLDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSG-----------SDW 157 (732)
Q Consensus 89 ~g~~~~~~~~~~~~~~~~l~~r~~~~~~~~~l~D~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G-----------~e~ 157 (732)
+|.++.|....++.+.+.|++++..+++. +-+. +. ....+++.|++|++.|.|+..... ...
T Consensus 135 d~~~la~s~d~~G~e~~~l~v~Dl~tg~~--~~~~--i~---~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~~~ 207 (430)
T d1qfma1 135 DGEYFAYGLSASGSDWVTIKFMKVDGAKE--LPDV--LE---RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLH 207 (430)
T ss_dssp TSSEEEEEEEETTCSCEEEEEEETTTTEE--EEEE--EE---EECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCC
T ss_pred CCCEEEEEeccccCchheeEEeccCccee--cccc--cc---cccccceEEcCCCCEEEEEEeccccCcccccccccCCc
Confidence 44555555555555556666665543321 1010 00 011247889999999999864321 112
Q ss_pred EEEEEEECCCCce----e-cccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCCcccEEEEEECCCCCCC-
Q 004766 158 ATIKLMRIEDQIV----E-ADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSE- 231 (732)
Q Consensus 158 ~~i~v~dl~~g~~----~-~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~- 231 (732)
..++...+.++.. + .+......+..+..|+|++.+++..... ......+|+.++......
T Consensus 208 ~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~--------------~~~~~~~~~~d~~~~~~~~ 273 (430)
T d1qfma1 208 QKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREG--------------CDPVNRLWYCDLQQESNGI 273 (430)
T ss_dssp CEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECS--------------SSSCCEEEEEEGGGSSSSS
T ss_pred ceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeecc--------------CCccEEEEEeeCCCccccc
Confidence 4788888876541 1 1111111124566788999988766433 123346777777543221
Q ss_pred -----CeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCCCCcEEeeecccceE
Q 004766 232 -----DILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQY 306 (732)
Q Consensus 232 -----~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 306 (732)
...+....... + .. ...+|..+++..+.. ..+..|..++++... ...|+.++...+...
T Consensus 274 ~~~~~~~~~~~~~~~~-~--~~-~~~~~~~~~~~Tn~~-a~~~~L~~~~~~~~~-----------~~~w~~vi~~~~~~~ 337 (430)
T d1qfma1 274 TGILKWVKLIDNFEGE-Y--DY-VTNEGTVFTFKTNRH-SPNYRLINIDFTDPE-----------ESKWKVLVPEHEKDV 337 (430)
T ss_dssp CSSCCCEEEECSSSSC-E--EE-EEEETTEEEEEECTT-CTTCEEEEEETTBCC-----------GGGCEEEECCCSSCE
T ss_pred ccccceeEeecccccc-e--EE-EecCCceeecccCcc-cccceeEEecCCCCc-----------cccceEEecccCcce
Confidence 12233222211 1 12 233555555555543 346789999987632 233666665433222
Q ss_pred --EEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEec-CCEEEEEEecC-CeeEEEEEeCCC
Q 004766 307 --EVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVN-LNQMIVSYLSD-VKYVLQIRDLKN 382 (732)
Q Consensus 307 --~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~-~~~l~~~~~~~-g~~~l~~~d~~~ 382 (732)
..++..+++|++....+ ...+|.+++++++. +..+.+.. ...+.++.... ++.+++.+..- ..+.++.+|+++
T Consensus 338 ~~~~~~~~~~~lvl~~~~~-~~~~l~v~~~~~~~-~~~~~~~~-~~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t 414 (430)
T d1qfma1 338 LEWVACVRSNFLVLCYLHD-VKNTLQLHDLATGA-LLKIFPLE-VGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTK 414 (430)
T ss_dssp EEEEEEETTTEEEEEEEET-TEEEEEEEETTTCC-EEEEECCC-SSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTS
T ss_pred eeeEEEEECCEEEEEEEcC-CEeEEEEEECCCCc-EEEecCCC-CceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCC
Confidence 23445567777665554 36789999998876 56665544 34455444333 25677666543 346899999988
Q ss_pred Cce
Q 004766 383 GSL 385 (732)
Q Consensus 383 g~~ 385 (732)
|+.
T Consensus 415 ~~~ 417 (430)
T d1qfma1 415 EEL 417 (430)
T ss_dssp SSC
T ss_pred CCc
Confidence 863
|
| >d1xkta_ c.69.1.22 (A:) Fatty acid synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterase domain of polypeptide, polyketide and fatty acid synthases domain: Fatty acid synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.14 E-value=5.5e-06 Score=80.35 Aligned_cols=92 Identities=13% Similarity=0.013 Sum_probs=56.7
Q ss_pred CccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCccHHHHHHHHHHHHHHcCCCC
Q 004766 480 SHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQ 559 (732)
Q Consensus 480 ~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d 559 (732)
+.| ||++||+.++.. .| ..++...++.|+.+|.+|-|.... -.....|+.+++. +. ..
T Consensus 25 ~~P-l~l~Hg~~gs~~--~~----~~l~~~L~~~v~~~d~~g~~~~~~----------~~~~a~~~~~~~~---~~--~~ 82 (286)
T d1xkta_ 25 ERP-LFLVHPIEGSTT--VF----HSLASRLSIPTYGLQCTRAAPLDS----------IHSLAAYYIDCIR---QV--QP 82 (286)
T ss_dssp SCC-EEEECCTTCCCG--GG----HHHHHTCSSCEEEECCCTTSCCSC----------HHHHHHHHHHHHH---HH--CC
T ss_pred CCe-EEEECCCCccHH--HH----HHHHHHcCCeEEEEeCCCCCCCCC----------HHHHHHHHHHHHH---Hh--cC
Confidence 345 779999988742 33 234444578899999998664321 0111233333333 22 23
Q ss_pred CCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcC
Q 004766 560 SRKLCIEGGSNGGLLVGACINQRPDLFGCALAHV 593 (732)
Q Consensus 560 ~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~ 593 (732)
.+++.++|||+||.++..++.++|++...++...
T Consensus 83 ~~~~~lvGhS~Gg~vA~~~A~~~p~~~~~v~~l~ 116 (286)
T d1xkta_ 83 EGPYRVAGYSYGACVAFEMCSQLQAQQSPAPTHN 116 (286)
T ss_dssp SSCCEEEEETHHHHHHHHHHHHHHHC------CC
T ss_pred CCceEEeecCCccHHHHHHHHHHHHcCCCceeEE
Confidence 3689999999999999999999999877765443
|
| >d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Acylamino-acid-releasing enzyme, N-terminal donain domain: Acylamino-acid-releasing enzyme, N-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=98.08 E-value=0.003 Score=55.74 Aligned_cols=287 Identities=10% Similarity=0.082 Sum_probs=155.5
Q ss_pred HHHHHHhhcCCCCCCCcE-EeCCEEEEEEEcCCCCeeEEEEEeCCCCCceEEeCCCCcCCCCCEEEEeEEECCCCcEEEE
Q 004766 70 LREKITKLFDSPRYDAPF-KRGNKYFYFHNTGLQPQSVLYVQDSLDAKAKVLLDPNTLSDDGTAALIKVSVSEDAKYLAY 148 (732)
Q Consensus 70 l~~~~~~~~~~~~~~~p~-~~g~~~~~~~~~~~~~~~~l~~r~~~~~~~~~l~D~~~l~~~~~~~~~~~~~SPDG~~la~ 148 (732)
+...++.++..+.++.-- .+++.+.|+....+. -.+|... +.+.+.+.-.-++ ....+.+.=.+|.|
T Consensus 4 ivk~lE~lv~ip~Y~v~Gkl~~d~ll~~~~seG~--vni~~l~---g~~~vkLtkePI~-------~~~~Pk~~ldfi~f 71 (313)
T d2hu7a1 4 IVRDVERLIAVEKYSLQGVVDGDKLLVVGFSEGS--VNAYLYD---GGETVKLNREPIN-------SVLDPHYGVGRVIL 71 (313)
T ss_dssp HHHHHHHHHHSCEEEEEEEETTTEEEEEEEETTE--EEEEEES---SSSCEECCSSCCS-------EECEECTTBSEEEE
T ss_pred HHHHHHHHhcccceeEEEEecCCcEEEEEeccce--EEEEEEe---CCEEEEEeccccc-------CcCCCccCcceEEE
Confidence 333444444444444433 356666666544332 2245432 2323333222222 13345555678899
Q ss_pred EEec-cCCceEEEEEEECC-CCceec-ccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCCcccEEEEEEC
Q 004766 149 ALSY-SGSDWATIKLMRIE-DQIVEA-DALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFL 225 (732)
Q Consensus 149 ~~~~-~G~e~~~i~v~dl~-~g~~~~-~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l 225 (732)
+.|. .|.|...|++.++. .|+... +.....+..+.+ -|++.++|+..-+ . .++++-+
T Consensus 72 ~RDV~kGkE~Hai~~~Nlk~~GEE~~i~spk~vRI~S~~--yddk~vvF~Gase----------------d--~~~LYvi 131 (313)
T d2hu7a1 72 VRDVSKGAEQHALFKVNTSRPGEEQRLEAVKPMRILSGV--DTGEAVVFTGATE----------------D--RVALYAL 131 (313)
T ss_dssp EEECSTTSCCEEEEEEETTSTTCEEECTTSCSBEEEEEE--ECSSCEEEEEECS----------------S--CEEEEEE
T ss_pred EeehhcCcceeeEEEEccCCCCeeeEecCCceEEEEEee--ecCceEEEecccC----------------C--ceEEEEE
Confidence 9874 48888999999997 244332 333334445554 4888899985322 1 2334444
Q ss_pred CCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCCCCcEEeeecccce
Q 004766 226 GTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQ 305 (732)
Q Consensus 226 gt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 305 (732)
..+.-. .+...+. | ++.-.=.|.+|+-..--... ...+++.|+.+|. ++-++.+ +.+
T Consensus 132 egGklr--kL~~vPp---F--sFVtDI~~d~I~G~g~~~g~-~~sfF~adl~SG~--------------lri~tpk-eGS 188 (313)
T d2hu7a1 132 DGGGLR--ELARLPG---F--GFVSDIRGDLIAGLGFFGGG-RVSLFTSNLSSGG--------------LRVFDSG-EGS 188 (313)
T ss_dssp ETTEEE--EEEEESS---C--EEEEEEETTEEEEEEEEETT-EEEEEEEETTTEE--------------EEEECCS-SEE
T ss_pred eCCcee--eeccCCC---c--ceEEeccCCeEEEEeeecCC-cceEEEEecccCC--------------EEEecCC-CCc
Confidence 333222 2323322 2 22233357787654432222 3458899996542 3334332 223
Q ss_pred E--EEEEecCCeEEEEeCC-CCCCceEEEEeCCCCCCceEe-ccCCC-----CCceeEEEEecCCEEEEEEecCCeeEEE
Q 004766 306 Y--EVIANDDTVFTFLTNK-DAPKYKIIRVDLKEPNDWFEV-IPEAE-----RDVLESATAVNLNQMIVSYLSDVKYVLQ 376 (732)
Q Consensus 306 ~--~~~s~dg~~l~~~s~~-~~~~~~l~~~d~~~~~~~~~l-~~~~~-----~~~l~~~~~~~~~~l~~~~~~~g~~~l~ 376 (732)
. .+.++ |..+ .++. ......+..+|+++++ ...+ +|+.+ ...|..+...++++|++.+.++|++.|+
T Consensus 189 ~~~ay~~~-gnKV--~sdyEt~gEsywit~D~~s~~-yerve~P~kd~~sy~p~~I~~~~Y~Pdd~L~iiakrdG~s~lF 264 (313)
T d2hu7a1 189 FSSASISP-GMKV--TAGLETAREARLVTVDPRDGS-VEDLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVF 264 (313)
T ss_dssp EEEEEECT-TSCE--EEEEEESSCEEEEEECTTTCC-EEECCCSSCHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEE
T ss_pred ccceeEcc-Ccee--eeccCCCCceEEEEEecccCc-eeeeecCcccceeecceEEEeeeeCCCCcEEEEEecCCchhee
Confidence 2 24555 4444 2322 2223445577888776 3333 23331 1223444456778898899999999886
Q ss_pred EEeCCCCceeeecccccceeeEeecccCCcEEEEEEecCCCCceEEEE
Q 004766 377 IRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQC 424 (732)
Q Consensus 377 ~~d~~~g~~~~~l~~~~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~ 424 (732)
+ +|+. +..|.|.+..... =++.++++.+|..+|+.+..+
T Consensus 265 ~----nGk~---in~p~G~~~gat~--i~~~iyfshsSL~tP~kI~~~ 303 (313)
T d2hu7a1 265 I----DGER---VEAPQGNHGRVVL--WRGKLVTSHTSLSTPPRIVSL 303 (313)
T ss_dssp E----TTEE---ECCCSSEEEEEEE--ETTEEEEEEEETTEEEEEEEE
T ss_pred e----cceE---ecCCCCcccceEE--ECCEEEEeecccCCCceeEEc
Confidence 4 4754 5666777765543 256799999999999998764
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=97.98 E-value=0.00028 Score=72.29 Aligned_cols=120 Identities=12% Similarity=0.038 Sum_probs=63.5
Q ss_pred EEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecc-ccc-ceeeeeEEEEeCCcEEEEEEecCCCCCCCC-CCC
Q 004766 133 ALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEAD-ALS-WFKFSSIAWTHDSKGFFYSRYPAPKEGKDM-DAG 209 (732)
Q Consensus 133 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~-~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~~-~~~ 209 (732)
.++....+||||+| |+.+...+ +|.++|+++++.... .+. .....+++++|||+++|+....+-. ..+ .++
T Consensus 73 ~~s~t~gtpDGr~l-fV~d~~~~---rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~--v~~~~dg 146 (441)
T d1qnia2 73 HISMTDGRYDGKYL-FINDKANT---RVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFV--IPQPNDG 146 (441)
T ss_dssp EEEEETTEEEEEEE-EEEETTTT---EEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSC--EESSCSS
T ss_pred CcceecccCCCCEE-EEEcCCCC---EEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCc--ccccCcc
Confidence 34455578999987 45454433 789999999985431 121 2234789999999987765432210 000 001
Q ss_pred Ccc-cCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEec
Q 004766 210 TET-DSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEE 263 (732)
Q Consensus 210 ~~~-~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~ 263 (732)
... +......+-..+..+......+.. ..+ ...+.++|||+++++....
T Consensus 147 ~~~~~~~~~~~~~~iD~~t~~v~~qI~v--~~~---p~~v~~spdGk~a~vt~~n 196 (441)
T d1qnia2 147 TDFSLDNSYTMFTAIDAETMDVAWQVIV--DGN---LDNTDADYTGKYATSTCYN 196 (441)
T ss_dssp SCCCGGGEEEEEEEEETTTCSEEEEEEE--SSC---CCCEEECSSSSEEEEEESC
T ss_pred cccccccccceEEeecCccceeeEEEec--CCC---ccceEECCCCCEEEEEecC
Confidence 100 011112233345444322111111 111 2367899999999877643
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.93 E-value=0.0026 Score=60.48 Aligned_cols=227 Identities=14% Similarity=0.070 Sum_probs=115.7
Q ss_pred EECCCCcEEEEEEeccCCceEEEEEEECCCCceecccc-cceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCCc
Q 004766 138 SVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADAL-SWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNL 216 (732)
Q Consensus 138 ~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~-~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~~ 216 (732)
.+++||++||-.. ...+|+|||+.+++.+..-. .......+ ++|++.|+....+
T Consensus 20 c~~~d~~~l~sgs-----~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v--~~~~~~l~s~s~D------------------ 74 (293)
T d1p22a2 20 CLQYDDQKIVSGL-----RDNTIKIWDKNTLECKRILTGHTGSVLCL--QYDERVIITGSSD------------------ 74 (293)
T ss_dssp EEECCSSEEEEEE-----SSSCEEEEESSSCCEEEEECCCSSCEEEE--ECCSSEEEEEETT------------------
T ss_pred EEEEcCCEEEEEe-----CCCeEEEEECCCCcEEEEEecCCCCEeee--ecccceeeccccc------------------
Confidence 4788999887442 23479999999998653221 11122344 4588877765433
Q ss_pred ccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCCCCcE
Q 004766 217 YHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFV 296 (732)
Q Consensus 217 ~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~ 296 (732)
..|.+|++.++... ...... ... .....+....++.....+ .+.+++..+.... ...
T Consensus 75 -~~i~~~~~~~~~~~--~~~~~~--~~~--~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~-----------~~~ 131 (293)
T d1p22a2 75 -STVRVWDVNTGEML--NTLIHH--CEA--VLHLRFNNGMMVTCSKDR-----SIAVWDMASPTDI-----------TLR 131 (293)
T ss_dssp -SCEEEEESSSCCEE--EEECCC--CSC--EEEEECCTTEEEEEETTS-----CEEEEECSSSSCC-----------EEE
T ss_pred -cccccccccccccc--cccccc--ccc--cccccccccceeeccccc-----ceeEeeccccccc-----------ccc
Confidence 25788888765321 111111 111 233455555555444322 2455565542210 011
Q ss_pred EeeecccceEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecCCEEEEEEecCCeeEEE
Q 004766 297 KLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQ 376 (732)
Q Consensus 297 ~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~~l~~~~~~~g~~~l~ 376 (732)
...................++..+. ...+..+|+.+++....+..+. ..+..+.+.+ . .+++...++ .|+
T Consensus 132 ~~~~~~~~~v~~~~~~~~~~~~~s~----d~~i~~~d~~~~~~~~~~~~~~--~~v~~~~~~~-~-~l~~~~~dg--~i~ 201 (293)
T d1p22a2 132 RVLVGHRAAVNVVDFDDKYIVSASG----DRTIKVWNTSTCEFVRTLNGHK--RGIACLQYRD-R-LVVSGSSDN--TIR 201 (293)
T ss_dssp EEECCCSSCEEEEEEETTEEEEEET----TSEEEEEETTTCCEEEEEECCS--SCEEEEEEET-T-EEEEEETTS--CEE
T ss_pred ccccccccccccceecccccccccC----CCceeeecCCCCcEEEEEcccc--cccccccCCC-C-eEEEecCCC--EEE
Confidence 1111111222233444555554433 3468888988776333333332 3455555544 4 455556664 688
Q ss_pred EEeCCCCceeeecccccceeeEeecccCCcEEEEEEecCCCCceEEEEECCC
Q 004766 377 IRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKT 428 (732)
Q Consensus 377 ~~d~~~g~~~~~l~~~~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~ 428 (732)
+||+.+++.+.........+..+ ++++..++ +.+. -..++.+|+.+
T Consensus 202 i~d~~~~~~~~~~~~~~~~v~~~--~~~~~~l~-sg~~---dg~i~iwd~~~ 247 (293)
T d1p22a2 202 LWDIECGACLRVLEGHEELVRCI--RFDNKRIV-SGAY---DGKIKVWDLVA 247 (293)
T ss_dssp EEETTTCCEEEEECCCSSCEEEE--ECCSSEEE-EEET---TSCEEEEEHHH
T ss_pred EEecccceeeeeecccceeeeec--cccceEEE-EEcC---CCEEEEEECCC
Confidence 99998776654444333344333 34555443 3332 24677777643
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.83 E-value=6.3e-05 Score=77.23 Aligned_cols=119 Identities=11% Similarity=0.094 Sum_probs=73.8
Q ss_pred EEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecc-----cc--cceeeeeEEEEeCCcEEEEEEecCCCCCCCC
Q 004766 134 LIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEAD-----AL--SWFKFSSIAWTHDSKGFFYSRYPAPKEGKDM 206 (732)
Q Consensus 134 ~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~-----~~--~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~ 206 (732)
+..+.||||| +|| +. +...+|+|||+.+++.+.. .. ....+..++|||||+.|+..+.+.
T Consensus 187 ~~~v~~s~dg-~la-sg----s~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~------- 253 (393)
T d1sq9a_ 187 ATSVDISERG-LIA-TG----FNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSN------- 253 (393)
T ss_dssp CCEEEECTTS-EEE-EE----CTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEET-------
T ss_pred EEEEEECCCC-EEE-EE----eCCCcEEEEeecccccccccccccccccccceEEEcccccccceeeeecCCC-------
Confidence 3467899998 444 32 2235899999999875421 11 111247899999999998876543
Q ss_pred CCCCcccCCcccEEEEEECCCCCCCCeE---------EEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCC
Q 004766 207 DAGTETDSNLYHEFYYHFLGTKQSEDIL---------CWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLS 277 (732)
Q Consensus 207 ~~~~~~~~~~~~~v~~~~lgt~~~~~~~---------v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~ 277 (732)
....|.+|++.++.....+ ......+...+..++|||||++|+-.+.+ ..|.++|++
T Consensus 254 ---------t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D-----~~v~vWd~~ 319 (393)
T d1sq9a_ 254 ---------SFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWD-----GKLRFWDVK 319 (393)
T ss_dssp ---------TEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETT-----SEEEEEETT
T ss_pred ---------CcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCC-----CEEEEEECC
Confidence 1234677887765321110 00001123457789999999998755433 348888988
Q ss_pred CC
Q 004766 278 AL 279 (732)
Q Consensus 278 ~~ 279 (732)
++
T Consensus 320 ~g 321 (393)
T d1sq9a_ 320 TK 321 (393)
T ss_dssp TT
T ss_pred CC
Confidence 75
|
| >d1ei9a_ c.69.1.13 (A:) Palmitoyl protein thioesterase 1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterases domain: Palmitoyl protein thioesterase 1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.79 E-value=0.00014 Score=69.61 Aligned_cols=105 Identities=12% Similarity=0.037 Sum_probs=61.1
Q ss_pred CCccEEEEEcCCCCccCCCCcChhHHHHHHhc--CcEEEEEcccCCCCCchhHHhcccccCCccHHHHHHHHHHHHHHcC
Q 004766 479 GSHPCLLYGYGGFNISVTPSFSVSRTILMRHL--GAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAG 556 (732)
Q Consensus 479 ~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~--G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~ 556 (732)
.+.| ||++||-.++...+.-...+..++.++ |+.|..+++..+.. .....+. ...+.++++.+...+++-
T Consensus 4 ~P~P-VVLvHGlg~s~~~~~~m~~l~~~l~~~~pG~~V~~l~~g~~~~---~~~~~~~----~~~~~~~~e~v~~~I~~~ 75 (279)
T d1ei9a_ 4 APLP-LVIWHGMGDSCCNPLSMGAIKKMVEKKIPGIHVLSLEIGKTLR---EDVENSF----FLNVNSQVTTVCQILAKD 75 (279)
T ss_dssp SSCC-EEEECCTTCCSCCTTTTHHHHHHHHHHSTTCCEEECCCSSSHH---HHHHHHH----HSCHHHHHHHHHHHHHSC
T ss_pred CCCc-EEEECCCCCCCCChHHHHHHHHHHHHHCCCeEEEEEEcCCCcc---cccccch----hhhHHHHHHHHHHHHHhc
Confidence 4566 678899766544443333455666655 88888888643211 1111111 112344444444444432
Q ss_pred CCCCCcEEEEecChhHHHHHHHHhhCCC-eeeEEEE
Q 004766 557 YTQSRKLCIEGGSNGGLLVGACINQRPD-LFGCALA 591 (732)
Q Consensus 557 ~~d~~~i~i~G~S~GG~l~~~~~~~~p~-~f~a~v~ 591 (732)
..-.+++-++|||+||+++-+++.+.++ ..+-.|+
T Consensus 76 ~~~~~~v~lVGhSqGGLiaR~~i~~~~~~~V~~lIT 111 (279)
T d1ei9a_ 76 PKLQQGYNAMGFSQGGQFLRAVAQRCPSPPMVNLIS 111 (279)
T ss_dssp GGGTTCEEEEEETTHHHHHHHHHHHCCSSCEEEEEE
T ss_pred cccccceeEEEEccccHHHHHHHHHcCCCCcceEEE
Confidence 2334689999999999999988888765 2444444
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.77 E-value=0.00062 Score=69.43 Aligned_cols=146 Identities=12% Similarity=0.077 Sum_probs=84.8
Q ss_pred eEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCCCCcEEeeecccceE-EEEEecCCeEEEEeCC
Q 004766 244 YIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQY-EVIANDDTVFTFLTNK 322 (732)
Q Consensus 244 ~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~s~dg~~l~~~s~~ 322 (732)
+...+++|||| +|+ +.+. ...|.++|+.++... ..+ .....+........ ..|+|||+.|+..+.+
T Consensus 186 ~~~~v~~s~dg-~la-sgs~----Dg~i~iwd~~~~~~~-~~~------~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D 252 (393)
T d1sq9a_ 186 FATSVDISERG-LIA-TGFN----NGTVQISELSTLRPL-YNF------ESQHSMINNSNSIRSVKFSPQGSLLAIAHDS 252 (393)
T ss_dssp CCCEEEECTTS-EEE-EECT----TSEEEEEETTTTEEE-EEE------ECCC---CCCCCEEEEEECSSTTEEEEEEEE
T ss_pred cEEEEEECCCC-EEE-EEeC----CCcEEEEeecccccc-ccc------ccccccccccceEEEcccccccceeeeecCC
Confidence 44578899998 443 3322 234788898764210 000 00001111111111 2489999988765543
Q ss_pred CCCCceEEEEeCCCCCCceEec-------------cCCCCCceeEEEEecCCEEEEEEecCCeeEEEEEeCCCCceeeec
Q 004766 323 DAPKYKIIRVDLKEPNDWFEVI-------------PEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQL 389 (732)
Q Consensus 323 ~~~~~~l~~~d~~~~~~~~~l~-------------~~~~~~~l~~~~~~~~~~l~~~~~~~g~~~l~~~d~~~g~~~~~l 389 (732)
+ ....+..+|++++.....+. .|. ..+..+.+++++.++++...|+ .|++||+++|+.+..+
T Consensus 253 ~-t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~--~~V~~l~fspd~~~l~S~s~D~--~v~vWd~~~g~~~~~l 327 (393)
T d1sq9a_ 253 N-SFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHS--SWVMSLSFNDSGETLCSAGWDG--KLRFWDVKTKERITTL 327 (393)
T ss_dssp T-TEEEEEEEETTTCCEEEEECBC--------CCBSBS--SCEEEEEECSSSSEEEEEETTS--EEEEEETTTTEEEEEE
T ss_pred C-Ccceeeecccccceeeeeeccccccccceeeeeccc--CceeeeccCCCCCeeEEECCCC--EEEEEECCCCCEEEEE
Confidence 2 23456777888765333332 222 4578899998778888888884 7999999999887777
Q ss_pred ccccceee----EeecccCCcE
Q 004766 390 PIEIGSVN----AISARREDSV 407 (732)
Q Consensus 390 ~~~~g~v~----~~~~s~d~~~ 407 (732)
..+...|. .+.+++++..
T Consensus 328 ~gH~~~v~~~~~~~~~~~~~~~ 349 (393)
T d1sq9a_ 328 NMHCDDIEIEEDILAVDEHGDS 349 (393)
T ss_dssp ECCGGGCSSGGGCCCBCTTSCB
T ss_pred CCcCCcccCCccEEEECCCCCE
Confidence 65443332 2455666653
|
| >d1rp1a2 c.69.1.19 (A:1-336) Pancreatic lipase, N-terminal domain {Dog (Canis familiaris) [TaxId: 9615]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Pancreatic lipase, N-terminal domain domain: Pancreatic lipase, N-terminal domain species: Dog (Canis familiaris) [TaxId: 9615]
Probab=97.74 E-value=1.7e-05 Score=78.11 Aligned_cols=112 Identities=7% Similarity=-0.033 Sum_probs=74.3
Q ss_pred CCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCccHHHHHHHHHHHHHHcCC
Q 004766 478 DGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGY 557 (732)
Q Consensus 478 ~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~ 557 (732)
+...|++|++||.-+.............+|...++.|+++|.+.+... .+..+.. +-...-+.+...+++|.++..
T Consensus 67 ~~~~pt~iiiHGw~~~~~~~~~~~~~~a~l~~~d~NVI~VDW~~~a~~--~Y~~a~~--n~~~Vg~~ia~~i~~l~~~~g 142 (337)
T d1rp1a2 67 QTDKKTRFIIHGFIDKGEENWLLDMCKNMFKVEEVNCICVDWKKGSQT--SYTQAAN--NVRVVGAQVAQMLSMLSANYS 142 (337)
T ss_dssp CTTSEEEEEECCCCCTTCTTHHHHHHHHHTTTCCEEEEEEECHHHHSS--CHHHHHH--HHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCEEEEeCCCcCCCCcchHHHHHHHHHhcCCceEEEEeeccccCc--chHHHHH--HHHHHHHHHHHHHHHHHHhcC
Confidence 467899999999876654433333346777766799999999764322 1222211 111223555666777777656
Q ss_pred CCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCC
Q 004766 558 TQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVG 594 (732)
Q Consensus 558 ~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p 594 (732)
+++++|-++|||.|+.+++.+..+ ......++..-|
T Consensus 143 ~~~~~vhlIGhSLGAhvAG~aG~~-~~~l~rItgLDP 178 (337)
T d1rp1a2 143 YSPSQVQLIGHSLGAHVAGEAGSR-TPGLGRITGLDP 178 (337)
T ss_dssp CCGGGEEEEEETHHHHHHHHHHHT-STTCCEEEEESC
T ss_pred CChhheEEEeecHHHhhhHHHHHh-hccccceeccCC
Confidence 789999999999999999987765 444555555444
|
| >d1bu8a2 c.69.1.19 (A:1-336) Pancreatic lipase, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Pancreatic lipase, N-terminal domain domain: Pancreatic lipase, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.59 E-value=4.2e-05 Score=75.03 Aligned_cols=114 Identities=10% Similarity=-0.035 Sum_probs=76.9
Q ss_pred CCCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCccHHHHHHHHHHHHHHcCC
Q 004766 478 DGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGY 557 (732)
Q Consensus 478 ~~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~ 557 (732)
+...|++|++||.-+.............+|....+.|+++|...+... .+..+... -...-+.+...++.|.....
T Consensus 67 ~~~~pt~iiiHG~~~~~~~~~~~~~~~a~l~~~d~NVi~VDW~~~a~~--~Y~~a~~n--~~~Vg~~ia~~i~~l~~~~g 142 (338)
T d1bu8a2 67 QLDRKTRFIVHGFIDKGEDGWLLDMCKKMFQVEKVNCICVDWRRGSRT--EYTQASYN--TRVVGAEIAFLVQVLSTEMG 142 (338)
T ss_dssp CTTSEEEEEECCSCCTTCTTHHHHHHHHHHTTCCEEEEEEECHHHHSS--CHHHHHHH--HHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCceEEEeCcccCCCCcccHHHHHHHHHhcCCceEEEEechhhccc--chHHHHHh--HHHHHHHHHHHHHHHHHhcC
Confidence 567899999999866554434344446778766799999999764332 12222111 11122344456667766655
Q ss_pred CCCCcEEEEecChhHHHHHHHHhhCCCeeeEEEEcCCc
Q 004766 558 TQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGV 595 (732)
Q Consensus 558 ~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~p~ 595 (732)
+++++|-++|||.|+.+++.+..+-+.+...++..-|.
T Consensus 143 ~~~~~vhlIGhSLGAhiaG~ag~~l~~kigrItgLDPA 180 (338)
T d1bu8a2 143 YSPENVHLIGHSLGAHVVGEAGRRLEGHVGRITGLDPA 180 (338)
T ss_dssp CCGGGEEEEEETHHHHHHHHHHHHTTTCSSEEEEESCB
T ss_pred CCcceeEEEeccHHHHHHHHHHHhhccccccccccccC
Confidence 78999999999999999999988766666666655553
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.58 E-value=0.029 Score=53.11 Aligned_cols=222 Identities=10% Similarity=-0.013 Sum_probs=124.0
Q ss_pred EEEEEECCCCceecccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCCcccEEEEEECCCCC--CCCeEEE
Q 004766 159 TIKLMRIEDQIVEADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQ--SEDILCW 236 (732)
Q Consensus 159 ~i~v~dl~~g~~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~--~~~~~v~ 236 (732)
.|+.+++++..............++.|.+.++.||++-. ....|++.++.... .....+.
T Consensus 11 ~I~~~~l~~~~~~~~~~~~~~~~~id~d~~~~~lYw~D~------------------~~~~I~~~~l~~~~~~~~~~~~~ 72 (266)
T d1ijqa1 11 EVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDL------------------SQRMICSTQLDRAHGVSSYDTVI 72 (266)
T ss_dssp SEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEET------------------TTTEEEEEEC--------CEEEE
T ss_pred eEEEEECCCCcceeeeCCCCceEEEEEEeCCCEEEEEEC------------------CCCEEEEEEecCCCCCcceEEEE
Confidence 488899987763322111112356888888899988732 22357777764321 1222333
Q ss_pred ecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCCCCcEEeee-cccceE-EEEEecCC
Q 004766 237 KDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLID-GFDAQY-EVIANDDT 314 (732)
Q Consensus 237 ~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~-~~~s~dg~ 314 (732)
.... ....++++.+-++.|++... . ...|.++++++.. ...+.. ...... ..+.|...
T Consensus 73 ~~~~--~~p~glAvD~~~~~lY~~d~-~---~~~I~v~~~~g~~--------------~~~~~~~~~~~P~~l~vd~~~g 132 (266)
T d1ijqa1 73 SRDI--QAPDGLAVDWIHSNIYWTDS-V---LGTVSVADTKGVK--------------RKTLFRENGSKPRAIVVDPVHG 132 (266)
T ss_dssp CSSC--SCCCEEEEETTTTEEEEEET-T---TTEEEEEETTSSS--------------EEEEEECTTCCEEEEEEETTTT
T ss_pred eCCC--CCcceEEEeeccceEEEEec-C---CCEEEeEecCCce--------------EEEEEcCCCCCcceEEEEcccC
Confidence 2211 11235778788888877542 2 3468888887632 222222 222111 23566666
Q ss_pred eEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEec-CCEEEEEEecCCeeEEEEEeCCCCceeeecccc-
Q 004766 315 VFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVN-LNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIE- 392 (732)
Q Consensus 315 ~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~-~~~l~~~~~~~g~~~l~~~d~~~g~~~~~l~~~- 392 (732)
.+|+. +. +...+|+++++++.. .+.++... -....++.+.. +++||+..... ..|..++++ |...+.+...
T Consensus 133 ~ly~~-~~-~~~~~I~r~~~dGs~-~~~l~~~~-~~~p~gl~iD~~~~~lYw~d~~~--~~I~~~~~d-G~~~~~~~~~~ 205 (266)
T d1ijqa1 133 FMYWT-DW-GTPAKIKKGGLNGVD-IYSLVTEN-IQWPNGITLDLLSGRLYWVDSKL--HSISSIDVN-GGNRKTILEDE 205 (266)
T ss_dssp EEEEE-EC-SSSCEEEEEETTSCC-EEEEECSS-CSCEEEEEEETTTTEEEEEETTT--TEEEEEETT-SCSCEEEEECT
T ss_pred eEEEe-cc-CCCcceeEeccCCCc-eecccccc-cceeeEEEeeccccEEEEecCCc--CEEEEEECC-CCCEEEEEeCC
Confidence 77764 33 235689999998765 45666543 24456788874 37788875444 589999997 5432333211
Q ss_pred cc--eeeEeecccCCcEEEEEEecCCCCceEEEEECCCCC
Q 004766 393 IG--SVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 430 (732)
Q Consensus 393 ~g--~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~~ 430 (732)
.. ...+++ .+++.++++- .....+++++..+++
T Consensus 206 ~~~~~p~~la--v~~~~ly~td---~~~~~I~~~~~~~g~ 240 (266)
T d1ijqa1 206 KRLAHPFSLA--VFEDKVFWTD---IINEAIFSANRLTGS 240 (266)
T ss_dssp TTTSSEEEEE--EETTEEEEEE---TTTTEEEEEETTTCC
T ss_pred CcccccEEEE--EECCEEEEEE---CCCCeEEEEECCCCc
Confidence 11 122333 3456676542 234689999987775
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=97.57 E-value=0.0067 Score=60.85 Aligned_cols=164 Identities=10% Similarity=-0.019 Sum_probs=79.5
Q ss_pred eEEECCCCcEEEEEEeccCCceEEEEEEECCCCceeccc-ccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccC
Q 004766 136 KVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADA-LSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDS 214 (732)
Q Consensus 136 ~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~-~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~ 214 (732)
.+.+||||++|.- .+. + ....+.++-+++...... ..+.....+..+||++.++......
T Consensus 44 ~la~s~d~~~ly~-~~~-~--~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~--------------- 104 (365)
T d1jofa_ 44 WMTFDHERKNIYG-AAM-K--KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQ--------------- 104 (365)
T ss_dssp EEEECTTSSEEEE-EEB-T--EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSS---------------
T ss_pred EEEEcCCCCEEEE-EeC-C--cEEEEEEeCCCCeEEEeeecCCCCcEEEEECCCCCEEEEEEecC---------------
Confidence 6889999997754 432 2 245566665554322111 1111235678899999877665322
Q ss_pred CcccEEEEEECCC-------------CCCCCeE-EEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCC
Q 004766 215 NLYHEFYYHFLGT-------------KQSEDIL-CWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALP 280 (732)
Q Consensus 215 ~~~~~v~~~~lgt-------------~~~~~~~-v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~ 280 (732)
....++...+.. ....... ..+... .....++.+||||++++... .+. ..|++++.....
T Consensus 105 -~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~-~~h~h~v~~sPdG~~l~v~d-~g~---d~v~~~~~~~~g 178 (365)
T d1jofa_ 105 -PPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQE-NTGIHGMVFDPTETYLYSAD-LTA---NKLWTHRKLASG 178 (365)
T ss_dssp -TTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCT-TCCEEEEEECTTSSEEEEEE-TTT---TEEEEEEECTTS
T ss_pred -CCCEEEEeEccCCCCcceeEeeeecceecCcccCcccCC-CCcceEEEECCCCCEEEEee-CCC---CEEEEEEccCCC
Confidence 111222222111 0000000 011111 22346889999999997654 222 346666543210
Q ss_pred CCcccccccCCCCCcEEeee---cccceEEEEEecCCeEEEEeCCCCCCceEEEEeCCCC
Q 004766 281 EGLEGFKKRDGLLPFVKLID---GFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEP 337 (732)
Q Consensus 281 ~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~ 337 (732)
.+ ........ +.......++|||+.+|+....+ .+|..+++++.
T Consensus 179 -~~---------~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~---~~V~v~~~~~~ 225 (365)
T d1jofa_ 179 -EV---------ELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAG---NRICEYVIDPA 225 (365)
T ss_dssp -CE---------EEEEEEECSSTTCCEEEEEECTTSSEEEEEETTT---TEEEEEEECTT
T ss_pred -ce---------eeccceeecCCCCceEEEEECCCCceEEEeccCC---CEEEEEEecCC
Confidence 00 00111111 22223346899998887655432 35666665544
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.56 E-value=0.0024 Score=61.33 Aligned_cols=190 Identities=8% Similarity=-0.061 Sum_probs=105.1
Q ss_pred EEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCccc
Q 004766 134 LIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETD 213 (732)
Q Consensus 134 ~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~ 213 (732)
.....++++|..++... . ..+.+++..+++.+...... ....+.+|+++.+++...+.
T Consensus 83 ~~~~~~~~~~~~~~~~~----~--~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~v~~~~~-------------- 140 (287)
T d1pgua2 83 PKVASANNDGFTAVLTN----D--DDLLILQSFTGDIIKSVRLN--SPGSAVSLSQNYVAVGLEEG-------------- 140 (287)
T ss_dssp EEEEEECSSSEEEEEET----T--SEEEEEETTTCCEEEEEECS--SCEEEEEECSSEEEEEETTT--------------
T ss_pred eeeeeeccCCceEEEee----c--ccceeeeccceeeeeecccc--ceeeeeeccCcceeeecccc--------------
Confidence 34567889988776542 1 25778888888755432211 24467889998888775332
Q ss_pred CCcccEEEEEECCCCCCCCeEEEec-CCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCC
Q 004766 214 SNLYHEFYYHFLGTKQSEDILCWKD-PEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGL 292 (732)
Q Consensus 214 ~~~~~~v~~~~lgt~~~~~~~v~~~-~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~ 292 (732)
..+..|++.... ..... .........++|||||++|+....++ .+.++|+.++...
T Consensus 141 ----~~v~~~~~~~~~----~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg-----~i~i~d~~~~~~~---------- 197 (287)
T d1pgua2 141 ----NTIQVFKLSDLE----VSFDLKTPLRAKPSYISISPSETYIAAGDVMG-----KILLYDLQSREVK---------- 197 (287)
T ss_dssp ----SCEEEEETTEEE----EEEECSSCCSSCEEEEEECTTSSEEEEEETTS-----CEEEEETTTTEEE----------
T ss_pred ----ceeeeeeccccc----eeeeeeeccCCceeEEEeccCccccccccccc-----cccceeecccccc----------
Confidence 236666664321 11111 11223456789999999988765433 3778888764210
Q ss_pred CCcEEeeecccceE--EEEEec----------CCeEEEEeCCCCCCceEEEEeCCCCC-CceEeccCCCCCceeEEEEec
Q 004766 293 LPFVKLIDGFDAQY--EVIAND----------DTVFTFLTNKDAPKYKIIRVDLKEPN-DWFEVIPEAERDVLESATAVN 359 (732)
Q Consensus 293 ~~~~~l~~~~~~~~--~~~s~d----------g~~l~~~s~~~~~~~~l~~~d~~~~~-~~~~l~~~~~~~~l~~~~~~~ 359 (732)
........... ..|+|+ +..|+ .... ...|+.+|+..+. ....+..+. ..+..+.|.+
T Consensus 198 ---~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~-sgs~---D~~i~iw~~~~~~~~~~~~~~h~--~~V~~v~~~~ 268 (287)
T d1pgua2 198 ---TSRWAFRTSKINAISWKPAEKGANEEEIEEDLVA-TGSL---DTNIFIYSVKRPMKIIKALNAHK--DGVNNLLWET 268 (287)
T ss_dssp ---ECCSCCCSSCEEEEEECCCC------CCSCCEEE-EEET---TSCEEEEESSCTTCCEEETTSST--TCEEEEEEEE
T ss_pred ---cccccccccccceeeecccccccccccCCCCeeE-eecC---CCeEEEEECCCCCeEEEEeCCCC--CCeEEEEECC
Confidence 00000000111 124443 33333 2222 3468888987654 233333343 5678898888
Q ss_pred CCEEEEEEecCCeeEEEEEeC
Q 004766 360 LNQMIVSYLSDVKYVLQIRDL 380 (732)
Q Consensus 360 ~~~l~~~~~~~g~~~l~~~d~ 380 (732)
++. +++...|+ .|++|++
T Consensus 269 ~~~-l~s~g~D~--~v~iW~i 286 (287)
T d1pgua2 269 PST-LVSSGADA--CIKRWNV 286 (287)
T ss_dssp TTE-EEEEETTS--CEEEEEE
T ss_pred CCE-EEEEECCC--eEEEEEE
Confidence 555 56666775 5677763
|
| >d1mo2a_ c.69.1.22 (A:) Erythromycin polyketide synthase {Saccharopolyspora erythraea [TaxId: 1836]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterase domain of polypeptide, polyketide and fatty acid synthases domain: Erythromycin polyketide synthase species: Saccharopolyspora erythraea [TaxId: 1836]
Probab=97.55 E-value=0.00014 Score=69.75 Aligned_cols=99 Identities=14% Similarity=0.058 Sum_probs=61.7
Q ss_pred CCccEEEEEcCCCCccCCCCcChhHHHHHHhcCcEEEEEcccCCCCCchhHHhcccccCCccHHHHHHHH-HHHHHHcCC
Q 004766 479 GSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISA-SEYLISAGY 557 (732)
Q Consensus 479 ~~~P~vv~~hG~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~-~~~l~~~~~ 557 (732)
+..|.|+.+||.++......|.. +...|. ..+.|+.++.+|.+. .+....+++++.+. ++.+.+.
T Consensus 40 ~~~~~l~c~~~~~~gg~~~~y~~-La~~L~-~~~~V~al~~pG~~~----------~e~~~~s~~~~a~~~~~~i~~~-- 105 (255)
T d1mo2a_ 40 PGEVTVICCAGTAAISGPHEFTR-LAGALR-GIAPVRAVPQPGYEE----------GEPLPSSMAAVAAVQADAVIRT-- 105 (255)
T ss_dssp SCSSEEEEECCCSSSCSGGGGHH-HHHHHT-TTCCEEEECCTTSST----------TCCEESSHHHHHHHHHHHHHHT--
T ss_pred CCCCeEEEECCCCCCCCHHHHHH-HHHhcC-CCceEEEEeCCCcCC----------CCCCCCCHHHHHHHHHHHHHHh--
Confidence 45788999998543322234443 455566 568999999998653 12223356666654 3344443
Q ss_pred CCCCcEEEEecChhHHHHHHHHhhC---CCeeeEEEE
Q 004766 558 TQSRKLCIEGGSNGGLLVGACINQR---PDLFGCALA 591 (732)
Q Consensus 558 ~d~~~i~i~G~S~GG~l~~~~~~~~---p~~f~a~v~ 591 (732)
.....+.++|||+||.++..++.+. ......+|+
T Consensus 106 ~~~~P~~L~GhS~Gg~vA~e~A~~l~~~g~~v~~lvl 142 (255)
T d1mo2a_ 106 QGDKPFVVAGHSAGALMAYALATELLDRGHPPRGVVL 142 (255)
T ss_dssp TSSSCEEEEECSTTHHHHHHHHHHHHHHTCCCSEEEE
T ss_pred CCCCCEEEEEeCCcHHHHHHHHHhhHhcCCCccEEEE
Confidence 2235799999999999999888653 333444443
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.45 E-value=0.024 Score=54.64 Aligned_cols=176 Identities=10% Similarity=-0.022 Sum_probs=103.3
Q ss_pred EEEEEEECCCCceecccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCCcccEEEEEECCCCCCCCeEEEe
Q 004766 158 ATIKLMRIEDQIVEADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWK 237 (732)
Q Consensus 158 ~~i~v~dl~~g~~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~ 237 (732)
..|+++|+..+..+...... ......+++|++.|+....+ ..|++|++.+.. .+..
T Consensus 157 ~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~l~s~~~d-------------------g~i~~~d~~~~~----~~~~ 212 (342)
T d2ovrb2 157 FMVKVWDPETETCLHTLQGH-TNRVYSLQFDGIHVVSGSLD-------------------TSIRVWDVETGN----CIHT 212 (342)
T ss_dssp SCEEEEEGGGTEEEEEECCC-SSCEEEEEECSSEEEEEETT-------------------SCEEEEETTTCC----EEEE
T ss_pred CeEEEeecccceeeEEEcCc-ccccccccCCCCEEEEEeCC-------------------CeEEEeecccce----eeeE
Confidence 36889999877654322211 12456778899988876543 258888887653 2222
Q ss_pred cCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCCCCcEEeeecc--cceEEEEEecCCe
Q 004766 238 DPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGF--DAQYEVIANDDTV 315 (732)
Q Consensus 238 ~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~s~dg~~ 315 (732)
...+..... ++++++++|+..+.+ ..++++++.... ....+.... ......++.+++.
T Consensus 213 ~~~~~~~v~--~~~~~~~~l~s~s~d-----~~i~iwd~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~ 272 (342)
T d2ovrb2 213 LTGHQSLTS--GMELKDNILVSGNAD-----STVKIWDIKTGQ-------------CLQTLQGPNKHQSAVTCLQFNKNF 272 (342)
T ss_dssp ECCCCSCEE--EEEEETTEEEEEETT-----SCEEEEETTTCC-------------EEEEECSTTSCSSCEEEEEECSSE
T ss_pred eccccccee--EEecCCCEEEEEcCC-----CEEEEEeccccc-------------ccccccccceeeeceeecccCCCe
Confidence 222223333 456667777655433 237888877632 122222111 1223345667776
Q ss_pred EEEEeCCCCCCceEEEEeCCCCCCceEeccC---CCCCceeEEEEecCCEEEEEEecCCe--eEEEEEeCC
Q 004766 316 FTFLTNKDAPKYKIIRVDLKEPNDWFEVIPE---AERDVLESATAVNLNQMIVSYLSDVK--YVLQIRDLK 381 (732)
Q Consensus 316 l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~---~~~~~l~~~~~~~~~~l~~~~~~~g~--~~l~~~d~~ 381 (732)
++..+. ++.|..+|+.+++....+... .....+..+.+++++.+++....+|. .+|++||++
T Consensus 273 ~~s~s~----Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~ 339 (342)
T d2ovrb2 273 VITSSD----DGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFD 339 (342)
T ss_dssp EEEEET----TSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECC
T ss_pred eEEEcC----CCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCC
Confidence 654433 347889999888744444321 11245788899886677778787773 579999986
|
| >d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Acylamino-acid-releasing enzyme, N-terminal donain domain: Acylamino-acid-releasing enzyme, N-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=97.38 E-value=0.039 Score=48.52 Aligned_cols=222 Identities=11% Similarity=0.029 Sum_probs=122.6
Q ss_pred CCcEEEEEEeccCCceEEEEEEECCCCceecccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCCcccEEE
Q 004766 142 DAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFY 221 (732)
Q Consensus 142 DG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~~~~~v~ 221 (732)
|+..|.|.....|. .+++++ .+|+.+..+.+... ....=-+.=..|.|+++-.. ....+.||
T Consensus 24 ~~d~ll~~~~seG~--vni~~l--~g~~~vkLtkePI~-~~~~Pk~~ldfi~f~RDV~k-------------GkE~Hai~ 85 (313)
T d2hu7a1 24 DGDKLLVVGFSEGS--VNAYLY--DGGETVKLNREPIN-SVLDPHYGVGRVILVRDVSK-------------GAEQHALF 85 (313)
T ss_dssp TTTEEEEEEEETTE--EEEEEE--SSSSCEECCSSCCS-EECEECTTBSEEEEEEECST-------------TSCCEEEE
T ss_pred cCCcEEEEEeccce--EEEEEE--eCCEEEEEeccccc-CcCCCccCcceEEEEeehhc-------------CcceeeEE
Confidence 45556666544554 456655 46665544433321 11110111246778876442 23456788
Q ss_pred EEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCCCCcEEeeec
Q 004766 222 YHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDG 301 (732)
Q Consensus 222 ~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~ 301 (732)
..++..+.++ .-.+.+. +..+ .+..-|++.++|..+... ...+|+++ +|. ++.|..-
T Consensus 86 ~~Nlk~~GEE--~~i~spk-~vRI--~S~~yddk~vvF~Gased--~~~LYvie--gGk--------------lrkL~~v 142 (313)
T d2hu7a1 86 KVNTSRPGEE--QRLEAVK-PMRI--LSGVDTGEAVVFTGATED--RVALYALD--GGG--------------LRELARL 142 (313)
T ss_dssp EEETTSTTCE--EECTTSC-SBEE--EEEEECSSCEEEEEECSS--CEEEEEEE--TTE--------------EEEEEEE
T ss_pred EEccCCCCee--eEecCCc-eEEE--EEeeecCceEEEecccCC--ceEEEEEe--CCc--------------eeeeccC
Confidence 8887644332 1111221 2233 344569999999987655 56688776 332 4455431
Q ss_pred ccceEEEEEe-cCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecCCEEEEEEecCCeeEEEEEeC
Q 004766 302 FDAQYEVIAN-DDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDL 380 (732)
Q Consensus 302 ~~~~~~~~s~-dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~~l~~~~~~~g~~~l~~~d~ 380 (732)
. .+.+++. .|+++.=+.-..+....++..|+.++. .+.+.|.+ ..+......+++++...+..-+.+....+|+
T Consensus 143 P--pFsFVtDI~~d~I~G~g~~~g~~~sfF~adl~SG~-lri~tpke--GS~~~ay~~~gnKV~sdyEt~gEsywit~D~ 217 (313)
T d2hu7a1 143 P--GFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGG-LRVFDSGE--GSFSSASISPGMKVTAGLETAREARLVTVDP 217 (313)
T ss_dssp S--SCEEEEEEETTEEEEEEEEETTEEEEEEEETTTEE-EEEECCSS--EEEEEEEECTTSCEEEEEEESSCEEEEEECT
T ss_pred C--CcceEEeccCCeEEEEeeecCCcceEEEEecccCC-EEEecCCC--CcccceeEccCceeeeccCCCCceEEEEEec
Confidence 1 1222222 466554322222334458899997776 56665554 5677777888788866666667777667899
Q ss_pred CCCceeeecccccc--------eeeEeecccCCcEEEE
Q 004766 381 KNGSLLHQLPIEIG--------SVNAISARREDSVVFI 410 (732)
Q Consensus 381 ~~g~~~~~l~~~~g--------~v~~~~~s~d~~~l~~ 410 (732)
++++. .++.+|.. .+..+...||++.+.+
T Consensus 218 ~s~~y-erve~P~kd~~sy~p~~I~~~~Y~Pdd~L~ii 254 (313)
T d2hu7a1 218 RDGSV-EDLELPSKDFSSYRPTAITWLGYLPDGRLAVV 254 (313)
T ss_dssp TTCCE-EECCCSSCHHHHHCCSEEEEEEECTTSCEEEE
T ss_pred ccCce-eeeecCcccceeecceEEEeeeeCCCCcEEEE
Confidence 87776 78887732 2333445677664333
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.36 E-value=0.0075 Score=57.59 Aligned_cols=229 Identities=14% Similarity=0.090 Sum_probs=120.4
Q ss_pred EeCCCCcCCCCCEEEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecccccceeeeeEEEEeCCcEEEEEEecC
Q 004766 120 LLDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWFKFSSIAWTHDSKGFFYSRYPA 199 (732)
Q Consensus 120 l~D~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~~~~~~~~~~WspDg~~l~y~~~~~ 199 (732)
+.|.+.....+...+..+.+++++..+.... + .+|++|++.+.+.. . ....+.+++|+..++...
T Consensus 35 ~Wd~~~~~~~h~~~V~~~~~~~~~~~~s~s~--D----~~v~~w~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~--- 99 (287)
T d1pgua2 35 EWSSSSMHQDHSNLIVSLDNSKAQEYSSISW--D----DTLKVNGITKHEFG-S-----QPKVASANNDGFTAVLTN--- 99 (287)
T ss_dssp ETTTTEEECCCCSCEEEEECCSTTCCEEEET--T----TEEEETTEEEEECS-S-----CEEEEEECSSSEEEEEET---
T ss_pred EEECCCCCCCCCCCEEEEEecCCCeEEEEee--c----cccccccccccccc-c-----ceeeeeeccCCceEEEee---
Confidence 3455443333444567788888776443221 1 36777776543211 0 124567788876555431
Q ss_pred CCCCCCCCCCCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCC
Q 004766 200 PKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSAL 279 (732)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~ 279 (732)
...+..++..++... ..+... . ....+++++..+++...++. .+.++++.+.
T Consensus 100 -----------------~~~~~~~~~~~~~~~--~~~~~~--~---~~~~~~~~~~~~~v~~~~~~----~v~~~~~~~~ 151 (287)
T d1pgua2 100 -----------------DDDLLILQSFTGDII--KSVRLN--S---PGSAVSLSQNYVAVGLEEGN----TIQVFKLSDL 151 (287)
T ss_dssp -----------------TSEEEEEETTTCCEE--EEEECS--S---CEEEEEECSSEEEEEETTTS----CEEEEETTEE
T ss_pred -----------------cccceeeeccceeee--eecccc--c---eeeeeeccCcceeeeccccc----eeeeeecccc
Confidence 124666666554321 122211 1 13467889998887664332 3556666542
Q ss_pred CCCcccccccCCCCCcEEeeecccc--eEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceE-eccCCCCCceeEEE
Q 004766 280 PEGLEGFKKRDGLLPFVKLIDGFDA--QYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFE-VIPEAERDVLESAT 356 (732)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~-l~~~~~~~~l~~~~ 356 (732)
.. ...+...... ....|+|+|+.|+..+. ...|..+|+.++..... +..+. ..+..+.
T Consensus 152 ~~-------------~~~~~~~~~~~v~~~~~s~~~~~l~~g~~----dg~i~i~d~~~~~~~~~~~~~h~--~~v~~~~ 212 (287)
T d1pgua2 152 EV-------------SFDLKTPLRAKPSYISISPSETYIAAGDV----MGKILLYDLQSREVKTSRWAFRT--SKINAIS 212 (287)
T ss_dssp EE-------------EEECSSCCSSCEEEEEECTTSSEEEEEET----TSCEEEEETTTTEEEECCSCCCS--SCEEEEE
T ss_pred ce-------------eeeeeeccCCceeEEEeccCccccccccc----cccccceeecccccccccccccc--cccceee
Confidence 10 0111111111 12258999988775543 23588888877641111 11222 4466666
Q ss_pred Eec----------CCEEEEEEecCCeeEEEEEeCCCCc-eeeecccccceeeEeecccCCcEEEEEEec
Q 004766 357 AVN----------LNQMIVSYLSDVKYVLQIRDLKNGS-LLHQLPIEIGSVNAISARREDSVVFISFTS 414 (732)
Q Consensus 357 ~~~----------~~~l~~~~~~~g~~~l~~~d~~~g~-~~~~l~~~~g~v~~~~~s~d~~~l~~~~ss 414 (732)
+.+ ++.++++...|+ .|++|++.++. ..+.+..+...|..+.+++++. +++.++
T Consensus 213 ~~p~~~~~~~~~~~~~~l~sgs~D~--~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~~--l~s~g~ 277 (287)
T d1pgua2 213 WKPAEKGANEEEIEEDLVATGSLDT--NIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST--LVSSGA 277 (287)
T ss_dssp ECCCC------CCSCCEEEEEETTS--CEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE--EEEEET
T ss_pred ecccccccccccCCCCeeEeecCCC--eEEEEECCCCCeEEEEeCCCCCCeEEEEECCCCE--EEEEEC
Confidence 653 234666777774 68899986543 3344444456777888777753 345444
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=97.36 E-value=0.011 Score=59.24 Aligned_cols=106 Identities=9% Similarity=-0.055 Sum_probs=59.2
Q ss_pred EEeEEECCCCcEEEEEEeccCCceEEEEEEECC-CCceec-----ccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCC
Q 004766 134 LIKVSVSEDAKYLAYALSYSGSDWATIKLMRIE-DQIVEA-----DALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMD 207 (732)
Q Consensus 134 ~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~-~g~~~~-----~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~ 207 (732)
..++.+||||++|... +. |.+ .|++++.. +|.... ....+....+++|+|||+.+|.+..
T Consensus 147 ~h~v~~sPdG~~l~v~-d~-g~d--~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e---------- 212 (365)
T d1jofa_ 147 IHGMVFDPTETYLYSA-DL-TAN--KLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALME---------- 212 (365)
T ss_dssp EEEEEECTTSSEEEEE-ET-TTT--EEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEET----------
T ss_pred ceEEEECCCCCEEEEe-eC-CCC--EEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEecc----------
Confidence 3578899999988644 43 444 56666654 333211 1112223467999999997766531
Q ss_pred CCCcccCCcccEEEEEECCCCCCCCeEEE-ec--------------CCCCeeEEEeEEecCCcEEEEEE
Q 004766 208 AGTETDSNLYHEFYYHFLGTKQSEDILCW-KD--------------PEHPKYIFSGHVTEDGQYLVMCI 261 (732)
Q Consensus 208 ~~~~~~~~~~~~v~~~~lgt~~~~~~~v~-~~--------------~~~~~~~~~~~~SpDg~~l~~~~ 261 (732)
...+|..+++.++........ .. .........+.+||||++|+...
T Consensus 213 --------~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsn 273 (365)
T d1jofa_ 213 --------AGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASS 273 (365)
T ss_dssp --------TTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEE
T ss_pred --------CCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEc
Confidence 234566666654332111100 00 00112344678999999987654
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.10 E-value=0.051 Score=52.23 Aligned_cols=190 Identities=6% Similarity=-0.037 Sum_probs=100.9
Q ss_pred EEEEeCCCCCceEEeCCCCcCCCCCEEEEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecccccceeeeeEEEE
Q 004766 107 LYVQDSLDAKAKVLLDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWFKFSSIAWT 186 (732)
Q Consensus 107 l~~r~~~~~~~~~l~D~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~~~~~~~~~~Ws 186 (732)
|++.+..+++.+++.++..- ..........+.|+|+.. |+..........-.++.+..|+.......-....+++|+
T Consensus 80 l~~~d~~tg~~~~l~~~~~~--~~~~~~nd~~vd~~G~iw-~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~~~~Ng~~~s 156 (295)
T d2ghsa1 80 LFLRDTATGVLTLHAELESD--LPGNRSNDGRMHPSGALW-IGTMGRKAETGAGSIYHVAKGKVTKLFADISIPNSICFS 156 (295)
T ss_dssp EEEEETTTCCEEEEECSSTT--CTTEEEEEEEECTTSCEE-EEEEETTCCTTCEEEEEEETTEEEEEEEEESSEEEEEEC
T ss_pred cEEeecccceeeEEeeeecC--CCcccceeeEECCCCCEE-EEeccccccccceeEeeecCCcEEEEeeccCCcceeeec
Confidence 66666555665666665321 123557788999999844 343222111112234444566533211111113689999
Q ss_pred eCCcEEEEEEecCCCCCCCCCCCCcccCCcccEEEEEECCCCC----CCCeEEEecCCCCeeEEEeEEecCCcEEEEEEe
Q 004766 187 HDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQ----SEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIE 262 (732)
Q Consensus 187 pDg~~l~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~----~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~ 262 (732)
+|++.++++-. ....||++++.... .+.......+.......++++.++|.. .+...
T Consensus 157 ~d~~~l~~~dt------------------~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~Gnl-Wva~~ 217 (295)
T d2ghsa1 157 PDGTTGYFVDT------------------KVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHI-WNARW 217 (295)
T ss_dssp TTSCEEEEEET------------------TTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCE-EEEEE
T ss_pred CCCceEEEeec------------------ccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCE-Eeeee
Confidence 99999988742 34568888875321 112222233333345567888889874 33333
Q ss_pred cCCcceEEEEEEeCCCCCCCcccccccCCCCCcEEeeec-ccceEEEEE-ecCCeEEEEeCCCCC----------CceEE
Q 004766 263 ENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDG-FDAQYEVIA-NDDTVFTFLTNKDAP----------KYKII 330 (732)
Q Consensus 263 ~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~s-~dg~~l~~~s~~~~~----------~~~l~ 330 (732)
.+ ..|+.++.++.. ...+.-. ....-.+|. +|.+.||+.+...+. .+.|+
T Consensus 218 ~~----g~V~~~dp~G~~--------------~~~i~lP~~~~T~~~FGG~d~~~LyvTta~~~~~~~~~~~~p~~G~l~ 279 (295)
T d2ghsa1 218 GE----GAVDRYDTDGNH--------------IARYEVPGKQTTCPAFIGPDASRLLVTSAREHLDDDAITANPQHGLTF 279 (295)
T ss_dssp TT----TEEEEECTTCCE--------------EEEEECSCSBEEEEEEESTTSCEEEEEEBCTTCCHHHHHHCTTTTCEE
T ss_pred CC----CceEEecCCCcE--------------eeEecCCCCceEEEEEeCCCCCEEEEEECCcCCChhHhccCCCCceEE
Confidence 22 358888865421 2222111 111222354 688899988765321 35688
Q ss_pred EEeCCC
Q 004766 331 RVDLKE 336 (732)
Q Consensus 331 ~~d~~~ 336 (732)
++++..
T Consensus 280 ~~~~~~ 285 (295)
T d2ghsa1 280 ELGIEV 285 (295)
T ss_dssp ECSSCC
T ss_pred EEcCCC
Confidence 876643
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=97.05 E-value=0.036 Score=53.52 Aligned_cols=196 Identities=12% Similarity=0.010 Sum_probs=100.7
Q ss_pred eeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEE
Q 004766 181 SSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMC 260 (732)
Q Consensus 181 ~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~ 260 (732)
.+++++|||+ |+++.. ...+|++++.++. ...+.... ....+++++|||+.++..
T Consensus 31 e~iAv~pdG~-l~vt~~------------------~~~~I~~i~p~g~---~~~~~~~~---~~~~gla~~~dG~l~v~~ 85 (302)
T d2p4oa1 31 ENLASAPDGT-IFVTNH------------------EVGEIVSITPDGN---QQIHATVE---GKVSGLAFTSNGDLVATG 85 (302)
T ss_dssp EEEEECTTSC-EEEEET------------------TTTEEEEECTTCC---EEEEEECS---SEEEEEEECTTSCEEEEE
T ss_pred CCEEECCCCC-EEEEeC------------------CCCEEEEEeCCCC---EEEEEcCC---CCcceEEEcCCCCeEEEe
Confidence 5789999997 666532 3357888875532 22333322 345688999999954433
Q ss_pred EecCCcceEEEEEEeCCCCCCCcccccccCCCCCcEEeeecccce-E--EEEEecCCeEEEEeCCCCCCceEEEEeCCCC
Q 004766 261 IEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQ-Y--EVIANDDTVFTFLTNKDAPKYKIIRVDLKEP 337 (732)
Q Consensus 261 ~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~--~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~ 337 (732)
. ... .++.++..+.. . ....+....... . ..+.++| .+|+... ...++++++..++
T Consensus 86 ~-~~~----~~~~~~~~~~~-----------~-~~~~~~~~~~~~~~n~i~~~~~g-~~~v~~~---~~~~i~~~~~~~~ 144 (302)
T d2p4oa1 86 W-NAD----SIPVVSLVKSD-----------G-TVETLLTLPDAIFLNGITPLSDT-QYLTADS---YRGAIWLIDVVQP 144 (302)
T ss_dssp E-CTT----SCEEEEEECTT-----------S-CEEEEEECTTCSCEEEEEESSSS-EEEEEET---TTTEEEEEETTTT
T ss_pred c-CCc----eEEEEEecccc-----------c-ceeeccccCCccccceeEEccCC-CEEeecc---ccccceeeeccCC
Confidence 2 222 24444443311 0 022222211111 1 1355655 5554332 2457888888766
Q ss_pred CCceEecc--------CCCCCceeEEEEecCCEEEEEEecCCeeEEEEEeCCCCceeeeccc--ccceeeEeecccCCcE
Q 004766 338 NDWFEVIP--------EAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPI--EIGSVNAISARREDSV 407 (732)
Q Consensus 338 ~~~~~l~~--------~~~~~~l~~~~~~~~~~l~~~~~~~g~~~l~~~d~~~g~~~~~l~~--~~g~v~~~~~s~d~~~ 407 (732)
.....+.. ........++.+.. +.+++..... .+|++++............ ......++.++++|+
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~-~~l~~~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~- 220 (302)
T d2p4oa1 145 SGSIWLEHPMLARSNSESVFPAANGLKRFG-NFLYVSNTEK--MLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGN- 220 (302)
T ss_dssp EEEEEEECGGGSCSSTTCCSCSEEEEEEET-TEEEEEETTT--TEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCC-
T ss_pred cceeEecCCccceeeccCcccccccccccC-CceeeecCCC--CeEEeccccccccccccccccCCCCCcceEECCCCC-
Confidence 41110100 11112234555555 7788776655 5788998764332111111 122334567788886
Q ss_pred EEEEEecCCCCceEEEEECCCC
Q 004766 408 VFISFTSFLIPGIVYQCNLKTE 429 (732)
Q Consensus 408 l~~~~ss~~~p~~~y~~d~~~~ 429 (732)
+++.... -.+++++++..+
T Consensus 221 l~va~~~---~~~V~~i~p~G~ 239 (302)
T d2p4oa1 221 LYGATHI---YNSVVRIAPDRS 239 (302)
T ss_dssp EEEECBT---TCCEEEECTTCC
T ss_pred EEEEEcC---CCcEEEECCCCC
Confidence 5554333 257888887644
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=96.97 E-value=0.0084 Score=60.97 Aligned_cols=102 Identities=9% Similarity=-0.055 Sum_probs=57.6
Q ss_pred EEeCCcEEEEEEecCCCCCCCCCCCCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecC
Q 004766 185 WTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEEN 264 (732)
Q Consensus 185 WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~ 264 (732)
.+||||+||.+-. ...+|.++++.+.+... +.+.+.. ....++++||||+++++.....
T Consensus 79 gtpDGr~lfV~d~------------------~~~rVavIDl~t~k~~~--ii~iP~g-~gphgi~~spdg~t~YV~~~~~ 137 (441)
T d1qnia2 79 GRYDGKYLFINDK------------------ANTRVARIRLDIMKTDK--ITHIPNV-QAIHGLRLQKVPKTNYVFCNAE 137 (441)
T ss_dssp TEEEEEEEEEEET------------------TTTEEEEEETTTTEEEE--EEECTTC-CCEEEEEECCSSBCCEEEEEEC
T ss_pred ccCCCCEEEEEcC------------------CCCEEEEEECCCCcEee--EEecCCC-CCccceEEeccCCEEEEEeccC
Confidence 4799999887632 34579999998875432 2233322 2345789999999765443221
Q ss_pred C--------------cceEEEEEEeCCCCCCCcccccccCCCCCcEEeeecccceEEEEEecCCeEEEEe
Q 004766 265 C--------------DPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLT 320 (732)
Q Consensus 265 ~--------------~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s 320 (732)
. .....+-.+|..+.+ . ...+..+.......++|||+++|+.+
T Consensus 138 ~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~------------v-~~qI~v~~~p~~v~~spdGk~a~vt~ 194 (441)
T d1qnia2 138 FVIPQPNDGTDFSLDNSYTMFTAIDAETMD------------V-AWQVIVDGNLDNTDADYTGKYATSTC 194 (441)
T ss_dssp SCEESSCSSSCCCGGGEEEEEEEEETTTCS------------E-EEEEEESSCCCCEEECSSSSEEEEEE
T ss_pred CcccccCcccccccccccceEEeecCccce------------e-eEEEecCCCccceEECCCCCEEEEEe
Confidence 1 011233446665521 1 11222222333445899999888665
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=96.97 E-value=0.024 Score=55.36 Aligned_cols=159 Identities=10% Similarity=0.050 Sum_probs=94.1
Q ss_pred EEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCCCCcEEeeecccce--EEEEEecCCeEEEEeCC
Q 004766 245 IFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQ--YEVIANDDTVFTFLTNK 322 (732)
Q Consensus 245 ~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~s~dg~~l~~~s~~ 322 (732)
..+++|.++|+ |+++.. . ..+|+.++.+++. ........... -..+++||+ ||+....
T Consensus 42 lEG~~~D~~G~-Ly~~D~-~---~g~I~ri~p~g~~--------------~~~~~~~~~~~p~gla~~~dG~-l~va~~~ 101 (319)
T d2dg1a1 42 LEGLNFDRQGQ-LFLLDV-F---EGNIFKINPETKE--------------IKRPFVSHKANPAAIKIHKDGR-LFVCYLG 101 (319)
T ss_dssp EEEEEECTTSC-EEEEET-T---TCEEEEECTTTCC--------------EEEEEECSSSSEEEEEECTTSC-EEEEECT
T ss_pred cEeCEECCCCC-EEEEEC-C---CCEEEEEECCCCe--------------EEEEEeCCCCCeeEEEECCCCC-EEEEecC
Confidence 35889999997 655532 1 3578999877632 11221111111 124678875 5554432
Q ss_pred C-CCCceEEEEeCCCCCCceEeccC-CCCCceeEEEEecCCEEEEEEecC----CeeEEEEEeCCCCceeeeccccccee
Q 004766 323 D-APKYKIIRVDLKEPNDWFEVIPE-AERDVLESATAVNLNQMIVSYLSD----VKYVLQIRDLKNGSLLHQLPIEIGSV 396 (732)
Q Consensus 323 ~-~~~~~l~~~d~~~~~~~~~l~~~-~~~~~l~~~~~~~~~~l~~~~~~~----g~~~l~~~d~~~g~~~~~l~~~~g~v 396 (732)
+ .....++.++..+.. ...++.. .......++.+.+++.+++..... ....+++++.+ |+.++.+..+....
T Consensus 102 ~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~d-g~~~~~~~~~~~~p 179 (319)
T d2dg1a1 102 DFKSTGGIFAATENGDN-LQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPD-FRTVTPIIQNISVA 179 (319)
T ss_dssp TSSSCCEEEEECTTSCS-CEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTT-SCCEEEEEEEESSE
T ss_pred CCccceeEEEEcCCCce-eeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecc-cceeEEEeecccee
Confidence 2 234568888877665 4444432 223446677887777888875432 23578889886 54434443332334
Q ss_pred eEeecccCCcEEEEEEecCCCCceEEEEECCC
Q 004766 397 NAISARREDSVVFISFTSFLIPGIVYQCNLKT 428 (732)
Q Consensus 397 ~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~ 428 (732)
..+.+++|++.+|++-+ ...+++++++..
T Consensus 180 nGia~s~dg~~lyvad~---~~~~I~~~d~~~ 208 (319)
T d2dg1a1 180 NGIALSTDEKVLWVTET---TANRLHRIALED 208 (319)
T ss_dssp EEEEECTTSSEEEEEEG---GGTEEEEEEECT
T ss_pred eeeeeccccceEEEecc---cCCceEEEEEcC
Confidence 56788999998877643 346889988753
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.83 E-value=0.2 Score=46.86 Aligned_cols=202 Identities=8% Similarity=-0.037 Sum_probs=121.6
Q ss_pred EEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecccccc-eeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcc
Q 004766 134 LIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSW-FKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTET 212 (732)
Q Consensus 134 ~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~~~-~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~ 212 (732)
+.++.+-+..++|-++ +.... .|+..++.++........+ ....+++...-++.||++..
T Consensus 38 ~~~ld~D~~~~~iyws-d~~~~---~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~--------------- 98 (263)
T d1npea_ 38 IIGLAFDCVDKVVYWT-DISEP---SIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDS--------------- 98 (263)
T ss_dssp EEEEEEETTTTEEEEE-ETTTT---EEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEET---------------
T ss_pred EEEEEEEeCCCEEEEE-ECCCC---eEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEecc---------------
Confidence 3456777778888554 43332 6898999876533211111 12355666555778888732
Q ss_pred cCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCC
Q 004766 213 DSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGL 292 (732)
Q Consensus 213 ~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~ 292 (732)
....|.+.++..... ..+.... .....++++.|.+.+|++...... ...|+.+++++..
T Consensus 99 ---~~~~I~~~~~dg~~~--~~l~~~~--l~~p~~l~vdp~~g~ly~t~~~~~--~~~I~r~~~dG~~------------ 157 (263)
T d1npea_ 99 ---QLDRIEVAKMDGTQR--RVLFDTG--LVNPRGIVTDPVRGNLYWTDWNRD--NPKIETSHMDGTN------------ 157 (263)
T ss_dssp ---TTTEEEEEETTSCSC--EEEECSS--CSSEEEEEEETTTTEEEEEECCSS--SCEEEEEETTSCC------------
T ss_pred ---CCCEEEEEecCCceE--EEEeccc--ccCCcEEEEecccCcEEEeecCCC--CcEEEEecCCCCC------------
Confidence 334688888865432 2344322 123457889999999987764332 3469999987632
Q ss_pred CCcEEeee-cccceE-EEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecCCEEEEEEecC
Q 004766 293 LPFVKLID-GFDAQY-EVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSD 370 (732)
Q Consensus 293 ~~~~~l~~-~~~~~~-~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~~l~~~~~~~ 370 (732)
...+.. +..... ..+.+.+++||+.-. ...+|.++++++.. .+.++... .. -.++++.. ++||++....
T Consensus 158 --~~~i~~~~~~~P~glaiD~~~~~lYw~d~---~~~~I~~~~~~g~~-~~~v~~~~-~~-P~~lav~~-~~lYwtd~~~ 228 (263)
T d1npea_ 158 --RRILAQDNLGLPNGLTFDAFSSQLCWVDA---GTHRAECLNPAQPG-RRKVLEGL-QY-PFAVTSYG-KNLYYTDWKT 228 (263)
T ss_dssp --CEEEECTTCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTEEE-EEEEEECC-CS-EEEEEEET-TEEEEEETTT
T ss_pred --ceeeeeecccccceEEEeecCcEEEEEeC---CCCEEEEEECCCCC-eEEEECCC-CC-cEEEEEEC-CEEEEEECCC
Confidence 223332 211111 236667888887632 24579999998765 34555433 22 34677775 8888886654
Q ss_pred CeeEEEEEeCCCCcee
Q 004766 371 VKYVLQIRDLKNGSLL 386 (732)
Q Consensus 371 g~~~l~~~d~~~g~~~ 386 (732)
..|+++|..+|+..
T Consensus 229 --~~I~~~~~~~g~~~ 242 (263)
T d1npea_ 229 --NSVIAMDLAISKEM 242 (263)
T ss_dssp --TEEEEEETTTTEEE
T ss_pred --CEEEEEECCCCccc
Confidence 57999999878763
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.77 E-value=0.22 Score=46.57 Aligned_cols=206 Identities=11% Similarity=0.149 Sum_probs=120.3
Q ss_pred eEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCC
Q 004766 136 KVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSN 215 (732)
Q Consensus 136 ~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~ 215 (732)
+.-..|..+-||.-. | .+|.|+|+++.+.+....-....--..|. +.+.|.+++
T Consensus 67 sAIMhP~~~IiALra---g---~~LQiFnletK~klks~~~~e~VvfWkWi-s~~~L~lVT------------------- 120 (327)
T d1utca2 67 SAIMNPASKVIALKA---G---KTLQIFNIEMKSKMKAHTMTDDVTFWKWI-SLNTVALVT------------------- 120 (327)
T ss_dssp EEEECSSSSEEEEEE---T---TEEEEEETTTTEEEEEEECSSCCCEEEES-SSSEEEEEC-------------------
T ss_pred hhhcCCCCcEEEEec---C---CeEEEEehhHhhhhceEEcCCCcEEEEec-CCCEEEEEc-------------------
Confidence 445679889888764 3 37999999999876532211123456898 556888874
Q ss_pred cccEEEEEECCCCCCCCeEEEecCC--CCeeEEEeEEecCCcEEEEEEecCC--cceEEEEEEeCCCCCCCcccccccCC
Q 004766 216 LYHEFYYHFLGTKQSEDILCWKDPE--HPKYIFSGHVTEDGQYLVMCIEENC--DPVNKVYYCDLSALPEGLEGFKKRDG 291 (732)
Q Consensus 216 ~~~~v~~~~lgt~~~~~~~v~~~~~--~~~~~~~~~~SpDg~~l~~~~~~~~--~~~~~l~~~d~~~~~~~~~~~~~~~~ 291 (732)
...||-|++.+. .+.+.+|+... ....+.+...++|++|+++..-... .-...+-++..+.+
T Consensus 121 -~taVYHW~~~g~-s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~------------ 186 (327)
T d1utca2 121 -DNAVYHWSMEGE-SQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK------------ 186 (327)
T ss_dssp -SSEEEEEESSSS-CCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT------------
T ss_pred -CCceEEEcccCC-CCchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccC------------
Confidence 236999999543 34567776532 1235678899999999987653221 11233444444431
Q ss_pred CCCcEEeeecccceEEEEEecC----CeEEEEeCCCCCCceEEEEeCCCCC--------CceEe-ccCC-CCCceeEEEE
Q 004766 292 LLPFVKLIDGFDAQYEVIANDD----TVFTFLTNKDAPKYKIIRVDLKEPN--------DWFEV-IPEA-ERDVLESATA 357 (732)
Q Consensus 292 ~~~~~~l~~~~~~~~~~~s~dg----~~l~~~s~~~~~~~~l~~~d~~~~~--------~~~~l-~~~~-~~~~l~~~~~ 357 (732)
.....++....+..+.-+| ..++....++....+|..+++.++. ....+ +|++ .++.--.+.+
T Consensus 187 ---~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqv 263 (327)
T d1utca2 187 ---VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQI 263 (327)
T ss_dssp ---EEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEE
T ss_pred ---cCccccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEe
Confidence 3344454444443332233 2455555555556788888875521 11222 2332 1222234666
Q ss_pred ecCCEEEEEEecCCeeEEEEEeCCCCcee
Q 004766 358 VNLNQMIVSYLSDVKYVLQIRDLKNGSLL 386 (732)
Q Consensus 358 ~~~~~l~~~~~~~g~~~l~~~d~~~g~~~ 386 (732)
+....+++...+.| -|+++|+.||..+
T Consensus 264 s~kygiiyviTK~G--~i~lyDleTgt~i 290 (327)
T d1utca2 264 SEKHDVVFLITKYG--YIHLYDLETGTCI 290 (327)
T ss_dssp ETTTTEEEEEETTS--EEEEEETTTCCEE
T ss_pred eccCCEEEEEecCc--EEEEEEcccccEE
Confidence 65334655666664 6889999988753
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=96.72 E-value=0.059 Score=52.26 Aligned_cols=211 Identities=9% Similarity=0.029 Sum_probs=108.5
Q ss_pred eeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCCcccEEEEEECCCCCCCCeEEEecCCC---CeeEEEeEEecCCcEE
Q 004766 181 SSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEH---PKYIFSGHVTEDGQYL 257 (732)
Q Consensus 181 ~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~---~~~~~~~~~SpDg~~l 257 (732)
.+++|.|||+ ||++...... . .....+|++++..++.. .++..+.. ...-.++.+++||..|
T Consensus 21 EGpa~d~dG~-ly~~~~~~~~----------~-~~~~g~I~r~d~~~~~~---~~~~~~~~~~~~g~P~Gl~~~~dg~~l 85 (314)
T d1pjxa_ 21 EGPVFDKNGD-FYIVAPEVEV----------N-GKPAGEILRIDLKTGKK---TVICKPEVNGYGGIPAGCQCDRDANQL 85 (314)
T ss_dssp EEEEECTTSC-EEEEETTCEE----------T-TEECCEEEEECTTTCCE---EEEECCEETTEECCEEEEEECSSSSEE
T ss_pred eEeEEeCCCC-EEEEECcccc----------c-cccCCEEEEEECCCCcE---EEEECCccccCCCcceeEEEeCCCCEE
Confidence 5799999997 6665432100 0 11234789998876542 23322211 1123578999999987
Q ss_pred EEEEecCCcceEEEEEEeCCCCCCCcccccccCCCCCcEEeeecccceEEEEEecCCeEEEEeCC------------CCC
Q 004766 258 VMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNK------------DAP 325 (732)
Q Consensus 258 ~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~------------~~~ 325 (732)
++... ...+..++.++........ ..... .+. ...-..+.++| .|||.... ..+
T Consensus 86 ~vad~-----~~~i~~~~~~g~~~~~~~~--~~~g~---~~~---~pndl~~d~~G-~lyvtd~~~~~~~~~~~~~~~~~ 151 (314)
T d1pjxa_ 86 FVADM-----RLGLLVVQTDGTFEEIAKK--DSEGR---RMQ---GCNDCAFDYEG-NLWITAPAGEVAPADYTRSMQEK 151 (314)
T ss_dssp EEEET-----TTEEEEEETTSCEEECCSB--CTTSC---BCB---CCCEEEECTTS-CEEEEECBCBCTTSCCCBTTSSS
T ss_pred EEEEC-----CCeEEEEeCCCcEEEEEec--ccccc---ccC---CCcEEEECCCC-CEEEecCccCcccccccceeccC
Confidence 66532 2347788876632100000 00000 000 01112466776 56765321 123
Q ss_pred CceEEEEeCCCCCCceEeccCCCCCceeEEEEecCC-----EEEEEEecCCeeEEEEEeCCC-Ccee-eec--ccc---c
Q 004766 326 KYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLN-----QMIVSYLSDVKYVLQIRDLKN-GSLL-HQL--PIE---I 393 (732)
Q Consensus 326 ~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~-----~l~~~~~~~g~~~l~~~d~~~-g~~~-~~l--~~~---~ 393 (732)
..+||+++.++. ...+.... ..-.++.+++++ .|++..... .+|++++++. |... +++ .++ .
T Consensus 152 ~G~v~~~~~dg~--~~~~~~~~--~~pNGi~~~~d~d~~~~~lyv~d~~~--~~i~~~d~~~~g~~~~~~~~~~~~~~~~ 225 (314)
T d1pjxa_ 152 FGSIYCFTTDGQ--MIQVDTAF--QFPNGIAVRHMNDGRPYQLIVAETPT--KKLWSYDIKGPAKIENKKVWGHIPGTHE 225 (314)
T ss_dssp CEEEEEECTTSC--EEEEEEEE--SSEEEEEEEECTTSCEEEEEEEETTT--TEEEEEEEEETTEEEEEEEEEECCCCSS
T ss_pred CceEEEEeecCc--eeEeeCCc--ceeeeeEECCCCCcceeEEEEEeecc--cceEEeeccCccccceeeEEEEcccccc
Confidence 467999886543 23333221 223466776532 466654443 5788887642 3321 111 111 2
Q ss_pred ceeeEeecccCCcEEEEEEecCCCCceEEEEECCCCC
Q 004766 394 GSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 430 (732)
Q Consensus 394 g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~~ 430 (732)
+...++..+.+|+ |+++... ...++++|+++++
T Consensus 226 ~~pdGiavD~~Gn-lyVa~~~---~g~I~~~dp~~g~ 258 (314)
T d1pjxa_ 226 GGADGMDFDEDNN-LLVANWG---SSHIEVFGPDGGQ 258 (314)
T ss_dssp CEEEEEEEBTTCC-EEEEEET---TTEEEEECTTCBS
T ss_pred ccceeeEEecCCc-EEEEEcC---CCEEEEEeCCCCE
Confidence 3345667777886 5655332 3689999988774
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.72 E-value=0.034 Score=53.38 Aligned_cols=162 Identities=9% Similarity=0.017 Sum_probs=83.1
Q ss_pred eeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEE
Q 004766 180 FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVM 259 (732)
Q Consensus 180 ~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~ 259 (732)
+..++|||||+.|+..+.| ..|++|++.++.....+.... .+...+..++|+|++..+++
T Consensus 14 I~~l~fsp~~~~L~s~s~D-------------------g~v~iwd~~~~~~~~~~~~~~-~h~~~V~~v~f~~~~~~~l~ 73 (342)
T d1yfqa_ 14 ISDIKIIPSKSLLLITSWD-------------------GSLTVYKFDIQAKNVDLLQSL-RYKHPLLCCNFIDNTDLQIY 73 (342)
T ss_dssp EEEEEEEGGGTEEEEEETT-------------------SEEEEEEEETTTTEEEEEEEE-ECSSCEEEEEEEESSSEEEE
T ss_pred EEEEEEeCCCCEEEEEECC-------------------CeEEEEEccCCCcceEEEEec-CCCCCEEEEEEeCCCCCEEE
Confidence 4889999999999887643 368888886654322222211 12334668999998776655
Q ss_pred EEecCCcceEEEEEEeCCCCCCCcccccccCCCCCcEEeeec-ccce-EEEEEecCCeEEEEeCCCCCCceEEEEeCCCC
Q 004766 260 CIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDG-FDAQ-YEVIANDDTVFTFLTNKDAPKYKIIRVDLKEP 337 (732)
Q Consensus 260 ~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~-~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~ 337 (732)
+.... ..+.++++..... ....... .... ...+.+++..++..+. ...+..+|+.++
T Consensus 74 sg~~d----~~v~~w~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~wd~~~~ 132 (342)
T d1yfqa_ 74 VGTVQ----GEILKVDLIGSPS-------------FQALTNNEANLGICRICKYGDDKLIAASW----DGLIEVIDPRNY 132 (342)
T ss_dssp EEETT----SCEEEECSSSSSS-------------EEECBSCCCCSCEEEEEEETTTEEEEEET----TSEEEEECHHHH
T ss_pred Ecccc----cceeeeecccccc-------------ccccccccccccccccccccccccccccc----ccccceeecccc
Confidence 55432 2377778765321 1111111 1111 2234445555544333 235666776443
Q ss_pred CCceEecc----CCCCCceeEEEEecCCEEEEEEecCCeeEEEEEeCCCCc
Q 004766 338 NDWFEVIP----EAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGS 384 (732)
Q Consensus 338 ~~~~~l~~----~~~~~~l~~~~~~~~~~l~~~~~~~g~~~l~~~d~~~g~ 384 (732)
........ .........+.+......++....++ .|.+|++.+++
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~--~i~~~~~~~~~ 181 (342)
T d1yfqa_ 133 GDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNS--QVQWFRLPLCE 181 (342)
T ss_dssp TTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTT--EEEEEESSCCT
T ss_pred ccceeeecccccccccceeeeeeeeccCCceeeecCCC--cEEEEecccCc
Confidence 21111111 11111222334444344555556664 67888886554
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=96.57 E-value=0.32 Score=45.74 Aligned_cols=223 Identities=11% Similarity=0.051 Sum_probs=112.5
Q ss_pred EEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceeccc-----cc--ceeeeeEEEEeCCcEEEEEEecCCCCCCCC
Q 004766 134 LIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADA-----LS--WFKFSSIAWTHDSKGFFYSRYPAPKEGKDM 206 (732)
Q Consensus 134 ~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~-----~~--~~~~~~~~WspDg~~l~y~~~~~~~~~~~~ 206 (732)
-.+++++|||+ .|+.+... ..|+++|.+ |+.+... .. ......+++.++....+++..
T Consensus 25 P~gvavd~dg~--i~VaD~~n---~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~--------- 89 (279)
T d1q7fa_ 25 PSGVAVNAQND--IIVADTNN---HRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTER--------- 89 (279)
T ss_dssp EEEEEECTTCC--EEEEEGGG---TEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEEC---------
T ss_pred ccEEEEcCCCC--EEEEECCC---CEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceecc---------
Confidence 35788999998 46666443 378899976 4422110 00 001234555555544544432
Q ss_pred CCCCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccc
Q 004766 207 DAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGF 286 (732)
Q Consensus 207 ~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~ 286 (732)
....+|.+++.... ....+... .......++..++|+.++... . ...+++++.++..
T Consensus 90 --------~~~~~i~~~~~~g~---~~~~~~~~-~~~~p~~~avd~~G~i~v~~~--~---~~~~~~~~~~g~~------ 146 (279)
T d1q7fa_ 90 --------SPTHQIQIYNQYGQ---FVRKFGAT-ILQHPRGVTVDNKGRIIVVEC--K---VMRVIIFDQNGNV------ 146 (279)
T ss_dssp --------GGGCEEEEECTTSC---EEEEECTT-TCSCEEEEEECTTSCEEEEET--T---TTEEEEECTTSCE------
T ss_pred --------CCcccccccccccc---ceeecCCC-cccccceeccccCCcEEEEee--c---cceeeEeccCCce------
Confidence 12335665554321 11122111 112334677888888554322 1 2456667655410
Q ss_pred cccCCCCCcEEeee--cccceEE-EEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecCCEE
Q 004766 287 KKRDGLLPFVKLID--GFDAQYE-VIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQM 363 (732)
Q Consensus 287 ~~~~~~~~~~~l~~--~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~~l 363 (732)
....-. ....... .+.++| .+|+.... ...|++++.++.. ...+-.........++++.+++.+
T Consensus 147 --------~~~~g~~~~~~~~~~i~~d~~g-~i~v~d~~---~~~V~~~d~~G~~-~~~~g~~g~~~~P~giavD~~G~i 213 (279)
T d1q7fa_ 147 --------LHKFGCSKHLEFPNGVVVNDKQ-EIFISDNR---AHCVKVFNYEGQY-LRQIGGEGITNYPIGVGINSNGEI 213 (279)
T ss_dssp --------EEEEECTTTCSSEEEEEECSSS-EEEEEEGG---GTEEEEEETTCCE-EEEESCTTTSCSEEEEEECTTCCE
T ss_pred --------eecccccccccccceeeeccce-eEEeeecc---ccceeeeecCCce-eeeecccccccCCcccccccCCeE
Confidence 111111 1111111 244444 56654432 4578888876542 333322222234567888776778
Q ss_pred EEEEecCCeeEEEEEeCCCCceeeecccc--cceeeEeecccCCcEEEE
Q 004766 364 IVSYLSDVKYVLQIRDLKNGSLLHQLPIE--IGSVNAISARREDSVVFI 410 (732)
Q Consensus 364 ~~~~~~~g~~~l~~~d~~~g~~~~~l~~~--~g~v~~~~~s~d~~~l~~ 410 (732)
|++...+ ..+|.+++.+ |+.++.+..+ ......++.++||. +++
T Consensus 214 ~Vad~~~-~~~v~~f~~~-G~~~~~~~~~~~~~~p~~vav~~dG~-l~V 259 (279)
T d1q7fa_ 214 LIADNHN-NFNLTIFTQD-GQLISALESKVKHAQCFDVALMDDGS-VVL 259 (279)
T ss_dssp EEEECSS-SCEEEEECTT-SCEEEEEEESSCCSCEEEEEEETTTE-EEE
T ss_pred EEEECCC-CcEEEEECCC-CCEEEEEeCCCCCCCEeEEEEeCCCc-EEE
Confidence 8765433 2468888875 8865666433 22345667777774 544
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.27 E-value=0.44 Score=44.13 Aligned_cols=233 Identities=9% Similarity=0.048 Sum_probs=111.6
Q ss_pred EEeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceeccccc-ceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcc
Q 004766 134 LIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALS-WFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTET 212 (732)
Q Consensus 134 ~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~~-~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~ 212 (732)
-.++++++||+.. +++.... ..|..++..+......... .....++++++||+ |+++..
T Consensus 16 P~~vavd~dG~i~--v~~~~~~--~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~-i~v~d~--------------- 75 (260)
T d1rwia_ 16 PSGVAVDSAGNVY--VTSEGMY--GRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGT-VYVTDF--------------- 75 (260)
T ss_dssp EEEEEECTTCCEE--EEECSSS--CEEEEEC----CEEECCCCSCCSCCCEEECTTCC-EEEEET---------------
T ss_pred CCEEEEcCCCCEE--EEEcCCC--CEEEEEcCCCceEEEeccCCccCceEEEEcCCCC-EEEeee---------------
Confidence 4578899999833 2222221 3455555443322211111 11236789999986 544421
Q ss_pred cCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCC
Q 004766 213 DSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGL 292 (732)
Q Consensus 213 ~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~ 292 (732)
....+.+.+.++. ..+.... ......+++++++|+..+ . ... ...++.++..+...
T Consensus 76 ---~~~~i~~~~~~~~----~~~~~~~-~~~~p~~iavd~~g~i~v-~-d~~---~~~~~~~~~~~~~~----------- 131 (260)
T d1rwia_ 76 ---NNRVVTLAAGSNN----QTVLPFD-GLNYPEGLAVDTQGAVYV-A-DRG---NNRVVKLAAGSKTQ----------- 131 (260)
T ss_dssp ---TTEEEEECTTCSC----CEECCCC-SCCSEEEEEECTTCCEEE-E-EGG---GTEEEEECTTCSSC-----------
T ss_pred ---eeceeeeeeeccc----eeeeeee-eeeecccccccccceeEe-e-ccc---ccccccccccccee-----------
Confidence 1223333222221 1222211 112345788999998543 2 222 24566666554210
Q ss_pred CCcEEeeecccc-eEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecCCEEEEEEecCC
Q 004766 293 LPFVKLIDGFDA-QYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDV 371 (732)
Q Consensus 293 ~~~~~l~~~~~~-~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~~l~~~~~~~g 371 (732)
......+... .-..++++|+ +|+... ...+|++++.++.. ...+....-....++.+.+++.|+++...+
T Consensus 132 --~~~~~~~~~~p~~i~~~~~g~-~~v~~~---~~~~i~~~d~~~~~--~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~- 202 (260)
T d1rwia_ 132 --TVLPFTGLNDPDGVAVDNSGN-VYVTDT---DNNRVVKLEAESNN--QVVLPFTDITAPWGIAVDEAGTVYVTEHNT- 202 (260)
T ss_dssp --EECCCCSCCSCCEEEECTTCC-EEEEEG---GGTEEEEECTTTCC--EEECCCSSCCSEEEEEECTTCCEEEEETTT-
T ss_pred --eeeeecccCCcceeeecCCCC-Eeeecc---ccccccccccccce--eeeeeccccCCCccceeeeeeeeeeeecCC-
Confidence 1111111111 1123567665 554432 24579999987655 333332222344667777767888876655
Q ss_pred eeEEEEEeCCCCceeeecccc-cceeeEeecccCCcEEEEEEecCCCCceEEEEE
Q 004766 372 KYVLQIRDLKNGSLLHQLPIE-IGSVNAISARREDSVVFISFTSFLIPGIVYQCN 425 (732)
Q Consensus 372 ~~~l~~~d~~~g~~~~~l~~~-~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d 425 (732)
.+|++++.+ +.....+... .....++.++++++ |+++-. . -.++.+++
T Consensus 203 -~~i~~~~~~-~~~~~~~~~~~~~~P~~i~~d~~g~-l~vad~--~-~~rI~~i~ 251 (260)
T d1rwia_ 203 -NQVVKLLAG-STTSTVLPFTGLNTPLAVAVDSDRT-VYVADR--G-NDRVVKLT 251 (260)
T ss_dssp -TEEEEECTT-CSCCEECCCCSCCCEEEEEECTTCC-EEEEEG--G-GTEEEEEC
T ss_pred -CEEEEEeCC-CCeEEEEccCCCCCeEEEEEeCCCC-EEEEEC--C-CCEEEEEe
Confidence 478888876 4332333221 22334566677765 554411 1 23555554
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.24 E-value=0.44 Score=43.81 Aligned_cols=187 Identities=9% Similarity=0.085 Sum_probs=96.6
Q ss_pred EEEeCCcEEEEEEecCCCCCCCCCCCCcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEec
Q 004766 184 AWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEE 263 (732)
Q Consensus 184 ~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~ 263 (732)
++++||+.|+-...|. .|.+|++.+++. +..+.. +...+.. +++|+++|+..+.+
T Consensus 20 c~~~d~~~l~sgs~Dg-------------------~i~vWd~~~~~~--~~~l~~--H~~~V~~--v~~~~~~l~s~s~D 74 (293)
T d1p22a2 20 CLQYDDQKIVSGLRDN-------------------TIKIWDKNTLEC--KRILTG--HTGSVLC--LQYDERVIITGSSD 74 (293)
T ss_dssp EEECCSSEEEEEESSS-------------------CEEEEESSSCCE--EEEECC--CSSCEEE--EECCSSEEEEEETT
T ss_pred EEEEcCCEEEEEeCCC-------------------eEEEEECCCCcE--EEEEec--CCCCEee--eecccceeeccccc
Confidence 5788999888765433 588899876542 223332 2233433 45688887655433
Q ss_pred CCcceEEEEEEeCCCCCCCcccccccCCCCCcEEeeecccceEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCC---c
Q 004766 264 NCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPND---W 340 (732)
Q Consensus 264 ~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~---~ 340 (732)
+ .+.++++..+. ..............+.+....+...... ..+..++..+... .
T Consensus 75 ~-----~i~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 131 (293)
T d1p22a2 75 S-----TVRVWDVNTGE--------------MLNTLIHHCEAVLHLRFNNGMMVTCSKD----RSIAVWDMASPTDITLR 131 (293)
T ss_dssp S-----CEEEEESSSCC--------------EEEEECCCCSCEEEEECCTTEEEEEETT----SCEEEEECSSSSCCEEE
T ss_pred c-----ccccccccccc--------------ccccccccccccccccccccceeecccc----cceeEeecccccccccc
Confidence 2 37777876642 1111111111222233444444443332 2355556554431 1
Q ss_pred eEeccCCCCCceeEEEEecCCEEEEEEecCCeeEEEEEeCCCCceeeecccccceeeEeecccCCcEEEEEEecCCCCce
Q 004766 341 FEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGI 420 (732)
Q Consensus 341 ~~l~~~~~~~~l~~~~~~~~~~l~~~~~~~g~~~l~~~d~~~g~~~~~l~~~~g~v~~~~~s~d~~~l~~~~ss~~~p~~ 420 (732)
..+..+ ...+....+.. ..+ +....+ ..+.+||+.+++.+..+..+...+..+.. ++..++..... ..
T Consensus 132 ~~~~~~--~~~v~~~~~~~-~~~-~~~s~d--~~i~~~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d----g~ 199 (293)
T d1p22a2 132 RVLVGH--RAAVNVVDFDD-KYI-VSASGD--RTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSD----NT 199 (293)
T ss_dssp EEECCC--SSCEEEEEEET-TEE-EEEETT--SEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETT----SC
T ss_pred cccccc--ccccccceecc-ccc-ccccCC--CceeeecCCCCcEEEEEcccccccccccC--CCCeEEEecCC----CE
Confidence 122222 23444444444 444 444455 46889999888766666544444444443 44544433222 46
Q ss_pred EEEEECCCCC
Q 004766 421 VYQCNLKTET 430 (732)
Q Consensus 421 ~y~~d~~~~~ 430 (732)
+..+|+.+.+
T Consensus 200 i~i~d~~~~~ 209 (293)
T d1p22a2 200 IRLWDIECGA 209 (293)
T ss_dssp EEEEETTTCC
T ss_pred EEEEecccce
Confidence 7888887764
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.75 E-value=0.78 Score=42.56 Aligned_cols=231 Identities=8% Similarity=-0.027 Sum_probs=130.6
Q ss_pred CcEEEEEEeccCCceEEEEEEECCCCceec------ccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccCCc
Q 004766 143 AKYLAYALSYSGSDWATIKLMRIEDQIVEA------DALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNL 216 (732)
Q Consensus 143 G~~la~~~~~~G~e~~~i~v~dl~~g~~~~------~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~~~ 216 (732)
|.+|.|+.. ..|+-+++++..... .........++++.+-++.||++.. .
T Consensus 1 ~~fLl~s~~------~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~------------------~ 56 (263)
T d1npea_ 1 GTHLLFAQT------GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDI------------------S 56 (263)
T ss_dssp CEEEEEEEE------EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEET------------------T
T ss_pred CCEEEEeCC------CeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCEEEEEEC------------------C
Confidence 677888852 478888887654211 1111111245777777888888632 2
Q ss_pred ccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCCCCcE
Q 004766 217 YHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFV 296 (732)
Q Consensus 217 ~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~ 296 (732)
...|++..+.+... ..+....- ....++++..-++.|++.... ...|.++++++.. .+
T Consensus 57 ~~~I~~~~l~g~~~--~~v~~~~~--~~p~~iAvD~~~~~lY~~d~~----~~~I~~~~~dg~~--------------~~ 114 (263)
T d1npea_ 57 EPSIGRASLHGGEP--TTIIRQDL--GSPEGIALDHLGRTIFWTDSQ----LDRIEVAKMDGTQ--------------RR 114 (263)
T ss_dssp TTEEEEEESSSCCC--EEEECTTC--CCEEEEEEETTTTEEEEEETT----TTEEEEEETTSCS--------------CE
T ss_pred CCeEEEEEcccCCc--EEEEEecc--ccccEEEEeccCCeEEEeccC----CCEEEEEecCCce--------------EE
Confidence 34688888865432 23433221 123467777778888766422 3468888887632 12
Q ss_pred Eeeec-ccce-EEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEec-CCEEEEEEecCCee
Q 004766 297 KLIDG-FDAQ-YEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVN-LNQMIVSYLSDVKY 373 (732)
Q Consensus 297 ~l~~~-~~~~-~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~-~~~l~~~~~~~g~~ 373 (732)
.+... .... ...+.|....+|+. +.+....+|+++++++.. .+.++... -....++++.. +++||+..... .
T Consensus 115 ~l~~~~l~~p~~l~vdp~~g~ly~t-~~~~~~~~I~r~~~dG~~-~~~i~~~~-~~~P~glaiD~~~~~lYw~d~~~--~ 189 (263)
T d1npea_ 115 VLFDTGLVNPRGIVTDPVRGNLYWT-DWNRDNPKIETSHMDGTN-RRILAQDN-LGLPNGLTFDAFSSQLCWVDAGT--H 189 (263)
T ss_dssp EEECSSCSSEEEEEEETTTTEEEEE-ECCSSSCEEEEEETTSCC-CEEEECTT-CSCEEEEEEETTTTEEEEEETTT--T
T ss_pred EEecccccCCcEEEEecccCcEEEe-ecCCCCcEEEEecCCCCC-ceeeeeec-ccccceEEEeecCcEEEEEeCCC--C
Confidence 23221 1111 12466767777754 333345679999998765 35555433 23345777764 46788775433 5
Q ss_pred EEEEEeCCCCceeeecccccceeeEeecccCCcEEEEEEecCCCCceEEEEECCCCC
Q 004766 374 VLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 430 (732)
Q Consensus 374 ~l~~~d~~~g~~~~~l~~~~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~~ 430 (732)
.|...+++ |...+.+........+++. +++.+|++-. .-..+++.|..+++
T Consensus 190 ~I~~~~~~-g~~~~~v~~~~~~P~~lav--~~~~lYwtd~---~~~~I~~~~~~~g~ 240 (263)
T d1npea_ 190 RAECLNPA-QPGRRKVLEGLQYPFAVTS--YGKNLYYTDW---KTNSVIAMDLAISK 240 (263)
T ss_dssp EEEEEETT-EEEEEEEEECCCSEEEEEE--ETTEEEEEET---TTTEEEEEETTTTE
T ss_pred EEEEEECC-CCCeEEEECCCCCcEEEEE--ECCEEEEEEC---CCCEEEEEECCCCc
Confidence 78999997 5543433222111223443 3566665432 24578888988774
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.22 E-value=0.73 Score=42.54 Aligned_cols=191 Identities=9% Similarity=0.008 Sum_probs=96.5
Q ss_pred EeEEECCCCcEEEEEEeccCCceEEEEEEECCCCceecccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCCCcccC
Q 004766 135 IKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDS 214 (732)
Q Consensus 135 ~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~~~~~~ 214 (732)
.++++++||+. |+.+..+ ..+++.+..++..+..........++++.++|+ |+++..
T Consensus 60 ~gvav~~~g~i--~v~d~~~---~~i~~~~~~~~~~~~~~~~~~~p~~iavd~~g~-i~v~d~----------------- 116 (260)
T d1rwia_ 60 QGLAVDGAGTV--YVTDFNN---RVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGA-VYVADR----------------- 116 (260)
T ss_dssp CCEEECTTCCE--EEEETTT---EEEEECTTCSCCEECCCCSCCSEEEEEECTTCC-EEEEEG-----------------
T ss_pred eEEEEcCCCCE--EEeeeee---ceeeeeeeccceeeeeeeeeeecccccccccce-eEeecc-----------------
Confidence 36789999973 5555443 356655544444332111111236788989886 444421
Q ss_pred CcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCcccccccCCCCC
Q 004766 215 NLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLP 294 (732)
Q Consensus 215 ~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~ 294 (732)
...++++.+..+... .++.... .....+++++++|+. ++... . ...++.++.++..
T Consensus 117 -~~~~~~~~~~~~~~~---~~~~~~~-~~~p~~i~~~~~g~~-~v~~~-~---~~~i~~~d~~~~~-------------- 172 (260)
T d1rwia_ 117 -GNNRVVKLAAGSKTQ---TVLPFTG-LNDPDGVAVDNSGNV-YVTDT-D---NNRVVKLEAESNN-------------- 172 (260)
T ss_dssp -GGTEEEEECTTCSSC---EECCCCS-CCSCCEEEECTTCCE-EEEEG-G---GTEEEEECTTTCC--------------
T ss_pred -cccccccccccccee---eeeeecc-cCCcceeeecCCCCE-eeecc-c---cccccccccccce--------------
Confidence 223466665544321 2221111 111236788999983 33332 2 3468888876521
Q ss_pred cEEee-ecccceEE-EEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecCCEEEEEEecCCe
Q 004766 295 FVKLI-DGFDAQYE-VIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVK 372 (732)
Q Consensus 295 ~~~l~-~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~~l~~~~~~~g~ 372 (732)
...+. ........ .+.++| .||+ ++.. +.+|++++..+.. ..++....-..-.++.+.+++.|+++...+
T Consensus 173 ~~~~~~~~~~~p~gi~~d~~g-~l~v-sd~~--~~~i~~~~~~~~~--~~~~~~~~~~~P~~i~~d~~g~l~vad~~~-- 244 (260)
T d1rwia_ 173 QVVLPFTDITAPWGIAVDEAG-TVYV-TEHN--TNQVVKLLAGSTT--STVLPFTGLNTPLAVAVDSDRTVYVADRGN-- 244 (260)
T ss_dssp EEECCCSSCCSEEEEEECTTC-CEEE-EETT--TTEEEEECTTCSC--CEECCCCSCCCEEEEEECTTCCEEEEEGGG--
T ss_pred eeeeeccccCCCccceeeeee-eeee-eecC--CCEEEEEeCCCCe--EEEEccCCCCCeEEEEEeCCCCEEEEECCC--
Confidence 11111 11111111 355665 4655 3332 4578888876554 334433322334567777656777764443
Q ss_pred eEEEEEeC
Q 004766 373 YVLQIRDL 380 (732)
Q Consensus 373 ~~l~~~d~ 380 (732)
.+|.+++.
T Consensus 245 ~rI~~i~~ 252 (260)
T d1rwia_ 245 DRVVKLTS 252 (260)
T ss_dssp TEEEEECC
T ss_pred CEEEEEeC
Confidence 46776664
|
| >d1ivya_ c.69.1.5 (A:) Human 'protective protein', HPP {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Serine carboxypeptidase-like domain: Human 'protective protein', HPP species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.99 E-value=0.041 Score=56.55 Aligned_cols=137 Identities=13% Similarity=0.086 Sum_probs=82.3
Q ss_pred EEccCCCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCc--------------C--hhHHHHHHhcCcEEEEEcc
Q 004766 456 VPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSF--------------S--VSRTILMRHLGAVFCIANI 519 (732)
Q Consensus 456 ~~s~dG~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~--------------~--~~~~~~l~~~G~~v~~~~~ 519 (732)
+...++ ..+..|++..+.- ....|+++++-||||.+..... . ..-..|.. =..++.+|.
T Consensus 26 l~~~~~-~~lffw~~~s~~~--~~~~Pl~~wlnGGPG~SS~~g~~~e~GP~~v~~~~~~~~~N~~SW~~--~anllfIDq 100 (452)
T d1ivya_ 26 LKSSGS-KHLHYWFVESQKD--PENSPVVLWLNGGPGCSSLDGLLTEHGPFLVQPDGVTLEYNPYSWNL--IANVLYLES 100 (452)
T ss_dssp EECSTT-EEEEEEEECCSSC--GGGSCEEEEECCTTTBCTHHHHHTTTSSEEECTTSSCEEECTTCGGG--SSEEEEECC
T ss_pred eecCCC-ceEEEEEEEcCCC--CCCCCEEEEECCCCcHHHHHHHHHccCCcEEcCCCCeeccCCcchhc--ccCEEEEec
Confidence 344567 7888887754431 2568999999999997653110 0 01123333 356777798
Q ss_pred cCCCCCchhHHhcccccCCccHHHHHHHHHH-HHHHcCCCCCCcEEEEecChhHHHHHHHHhh---CC-CeeeEEEEcCC
Q 004766 520 RGGGEYGEEWHKGGALAKKQNCFDDFISASE-YLISAGYTQSRKLCIEGGSNGGLLVGACINQ---RP-DLFGCALAHVG 594 (732)
Q Consensus 520 rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~-~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~---~p-~~f~a~v~~~p 594 (732)
+-|.||...-.. .....-...-.|+..++. ++....-...+++.|.|-|+||..+..++.. .+ -.++++++..|
T Consensus 101 PvGtGfS~~~~~-~~~~~~~~~a~d~~~~l~~f~~~fp~~~~~~~yi~GESYgG~y~P~ia~~i~~~~~i~l~Gi~igng 179 (452)
T d1ivya_ 101 PAGVGFSYSDDK-FYATNDTEVAQSNFEALQDFFRLFPEYKNNKLFLTGESYAGIYIPTLAVLVMQDPSMNLQGLAVGNG 179 (452)
T ss_dssp STTSTTCEESSC-CCCCBHHHHHHHHHHHHHHHHHHSGGGTTSCEEEEEETTHHHHHHHHHHHHTTCTTSCEEEEEEESC
T ss_pred CCCcccccCCCC-CCCCCcHHHHHHHHHHHHHHHHhchhhcCCceEEeeccccchhhHHHHHHHHhcCcccccceEcCCC
Confidence 755556432110 011111123556655554 4444433345689999999999977776642 23 35899999999
Q ss_pred cccc
Q 004766 595 VMDM 598 (732)
Q Consensus 595 ~~d~ 598 (732)
++|.
T Consensus 180 ~~d~ 183 (452)
T d1ivya_ 180 LSSY 183 (452)
T ss_dssp CSBH
T ss_pred ccCc
Confidence 8874
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.87 E-value=1.5 Score=40.58 Aligned_cols=205 Identities=7% Similarity=0.009 Sum_probs=116.9
Q ss_pred EeEEECCCCcEEEEEEeccCCceEEEEEEECCCCce----ec-ccccceeeeeEEEEeCCcEEEEEEecCCCCCCCCCCC
Q 004766 135 IKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIV----EA-DALSWFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAG 209 (732)
Q Consensus 135 ~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~----~~-~~~~~~~~~~~~WspDg~~l~y~~~~~~~~~~~~~~~ 209 (732)
.++.+.+..++|-|+ +... ..|+..++.+... .. .........+++.-+-++.||++..
T Consensus 33 ~~id~d~~~~~lYw~-D~~~---~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~------------ 96 (266)
T d1ijqa1 33 VALDTEVASNRIYWS-DLSQ---RMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDS------------ 96 (266)
T ss_dssp EEEEEETTTTEEEEE-ETTT---TEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEET------------
T ss_pred EEEEEEeCCCEEEEE-ECCC---CEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccceEEEEec------------
Confidence 467788888888665 4332 2577677654221 00 0111111246777667888888732
Q ss_pred CcccCCcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEecCCcceEEEEEEeCCCCCCCccccccc
Q 004766 210 TETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKR 289 (732)
Q Consensus 210 ~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~ 289 (732)
...+|.+.++..... ..+..... ....++++.|...+|++... +. ...|+.+++++..
T Consensus 97 ------~~~~I~v~~~~g~~~--~~~~~~~~--~~P~~l~vd~~~g~ly~~~~-~~--~~~I~r~~~dGs~--------- 154 (266)
T d1ijqa1 97 ------VLGTVSVADTKGVKR--KTLFRENG--SKPRAIVVDPVHGFMYWTDW-GT--PAKIKKGGLNGVD--------- 154 (266)
T ss_dssp ------TTTEEEEEETTSSSE--EEEEECTT--CCEEEEEEETTTTEEEEEEC-SS--SCEEEEEETTSCC---------
T ss_pred ------CCCEEEeEecCCceE--EEEEcCCC--CCcceEEEEcccCeEEEecc-CC--CcceeEeccCCCc---------
Confidence 334688888875432 22232221 22357888998888877653 22 3579999987632
Q ss_pred CCCCCcEEeeec-ccc-eEEEEEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCC-CceeEEEEecCCEEEEE
Q 004766 290 DGLLPFVKLIDG-FDA-QYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAER-DVLESATAVNLNQMIVS 366 (732)
Q Consensus 290 ~~~~~~~~l~~~-~~~-~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~-~~l~~~~~~~~~~l~~~ 366 (732)
.+.+... ... .-..+.+.+++||+.-. ....|..+++++.. .+.++..... ....++++.. ++||++
T Consensus 155 -----~~~l~~~~~~~p~gl~iD~~~~~lYw~d~---~~~~I~~~~~dG~~-~~~~~~~~~~~~~p~~lav~~-~~ly~t 224 (266)
T d1ijqa1 155 -----IYSLVTENIQWPNGITLDLLSGRLYWVDS---KLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVFE-DKVFWT 224 (266)
T ss_dssp -----EEEEECSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCS-CEEEEECTTTTSSEEEEEEET-TEEEEE
T ss_pred -----eecccccccceeeEEEeeccccEEEEecC---CcCEEEEEECCCCC-EEEEEeCCCcccccEEEEEEC-CEEEEE
Confidence 3334321 111 11236677888998633 24589999998765 3444333211 2234577776 888887
Q ss_pred EecCCeeEEEEEeCCCCceeeec
Q 004766 367 YLSDVKYVLQIRDLKNGSLLHQL 389 (732)
Q Consensus 367 ~~~~g~~~l~~~d~~~g~~~~~l 389 (732)
.... ..|++++..+|+..+.+
T Consensus 225 d~~~--~~I~~~~~~~g~~~~~~ 245 (266)
T d1ijqa1 225 DIIN--EAIFSANRLTGSDVNLL 245 (266)
T ss_dssp ETTT--TEEEEEETTTCCCCEEE
T ss_pred ECCC--CeEEEEECCCCcceEEE
Confidence 6544 57999998777654444
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=94.60 E-value=1.6 Score=42.87 Aligned_cols=113 Identities=9% Similarity=0.022 Sum_probs=57.5
Q ss_pred CCCCcEEEEEEeccCCceEEEEEEECCCCceecc-cccce-eeeeEEEEeCCcEEEEEEecCCCCCCCC-CCCC-ccc-C
Q 004766 140 SEDAKYLAYALSYSGSDWATIKLMRIEDQIVEAD-ALSWF-KFSSIAWTHDSKGFFYSRYPAPKEGKDM-DAGT-ETD-S 214 (732)
Q Consensus 140 SPDG~~la~~~~~~G~e~~~i~v~dl~~g~~~~~-~~~~~-~~~~~~WspDg~~l~y~~~~~~~~~~~~-~~~~-~~~-~ 214 (732)
.+|||||... +... .+|-++|+++-+..+. .+.+. ...+++-++++++.|.....+-. ... .++. ..+ .
T Consensus 96 tyDGrylFVN-Dkan---~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~--vP~pndg~~l~d~~ 169 (459)
T d1fwxa2 96 KYDGRFLFMN-DKAN---TRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDE--TPLVNDGTNMEDVA 169 (459)
T ss_dssp EEEEEEEEEE-ETTT---TEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSC--EESSCSSSSTTCGG
T ss_pred ccceeEEEEE-cCCC---ceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccc--cccCCCCccccchh
Confidence 3589987544 3322 3789999988774321 12211 23566667777776665432200 000 0111 111 1
Q ss_pred CcccEEEEEECCCCCCCCeEEEecCCCCeeEEEeEEecCCcEEEEEEec
Q 004766 215 NLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEE 263 (732)
Q Consensus 215 ~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~ 263 (732)
.+...+...+..+.....++.... ......+|+||+|+++++..
T Consensus 170 ~y~~~~t~ID~~tm~V~~QV~V~g-----~ld~~~~s~dGK~af~TsyN 213 (459)
T d1fwxa2 170 NYVNVFTAVDADKWEVAWQVLVSG-----NLDNCDADYEGKWAFSTSYN 213 (459)
T ss_dssp -EEEEEEEEETTTTEEEEEEEESS-----CCCCEEECSSSSEEEEEESC
T ss_pred hcceEEEEEecCCceEEEEeeeCC-----ChhccccCCCCCEEEEEecc
Confidence 233345566666543222222211 12367899999999887743
|
| >d1ku0a_ c.69.1.18 (A:) Lipase L1 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Bacterial lipase domain: Lipase L1 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.48 E-value=0.073 Score=52.73 Aligned_cols=42 Identities=7% Similarity=-0.062 Sum_probs=27.7
Q ss_pred CCccEEEEEcCCCCccC-----CCCcCh---hHHHHHHhcCcEEEEEcccC
Q 004766 479 GSHPCLLYGYGGFNISV-----TPSFSV---SRTILMRHLGAVFCIANIRG 521 (732)
Q Consensus 479 ~~~P~vv~~hG~~~~~~-----~~~~~~---~~~~~l~~~G~~v~~~~~rG 521 (732)
.++| ||++||-+|... ...|.. .+...|...|+.|+++.+..
T Consensus 6 ~~yP-IVLvHGl~Gf~~~~l~~~~YW~G~~~~I~~~L~~~G~~V~~~~V~p 55 (388)
T d1ku0a_ 6 NDAP-IVLLHGFTGWGREEMLGFKYWGGVRGDIEQWLNDNGYRTYTLAVGP 55 (388)
T ss_dssp CCCC-EEEECCSSCCCTTSGGGCCTTTTTTCCHHHHHHHTTCCEEECCCCS
T ss_pred CCCC-EEEeCCcccCCccccCcccccCCchhhhHHHHHhCCCEEEEeccCC
Confidence 4577 677899765521 123432 25667777999999999854
|
| >d1wpxa1 c.69.1.5 (A:1-421) Serine carboxypeptidase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Serine carboxypeptidase-like domain: Serine carboxypeptidase II species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.44 E-value=0.49 Score=47.49 Aligned_cols=132 Identities=14% Similarity=0.142 Sum_probs=77.1
Q ss_pred CCeeEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCcCh---------------hHHHHHHhcCcEEEEEcccCCCCC
Q 004766 461 GSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSV---------------SRTILMRHLGAVFCIANIRGGGEY 525 (732)
Q Consensus 461 G~~~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~~~---------------~~~~~l~~~G~~v~~~~~rG~g~~ 525 (732)
+ ..+..|++...+ ...+.|+||++-||||.+....+.. .-..|.. =..++.+|.+=|.||
T Consensus 27 ~-~~lfyw~~~s~~--~~~~~Pl~~WlnGGPG~SS~~g~~~e~GP~~i~~~~~~~~N~~sW~~--~anllfiD~PvGtGf 101 (421)
T d1wpxa1 27 D-KHFFFWTFESRN--DPAKDPVILWLNGGPGCSSLTGLFFELGPSSIGPDLKPIGNPYSWNS--NATVIFLDQPVNVGF 101 (421)
T ss_dssp C-CEEEEEEECCSS--CTTTSCEEEEECCTTTBCTHHHHHHTTSSEEECTTSCEEECTTCGGG--SSEEEEECCSTTSTT
T ss_pred C-ceEEEEEEEeCC--CCCCCCEEEEECCCCcHHHHHHHHHhcCCcEECCCCccccCCccccc--ccCEEEEecCCCCCc
Confidence 5 577777664433 2356799999999999864311100 0012222 246777887765666
Q ss_pred chhHHhcccccCCccHHHHHHHHHHHHHHc-C-CC-CCCcEEEEecChhHHHHHHHHhh---CC---CeeeEEEEcCCcc
Q 004766 526 GEEWHKGGALAKKQNCFDDFISASEYLISA-G-YT-QSRKLCIEGGSNGGLLVGACINQ---RP---DLFGCALAHVGVM 596 (732)
Q Consensus 526 g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~-~-~~-d~~~i~i~G~S~GG~l~~~~~~~---~p---~~f~a~v~~~p~~ 596 (732)
...-.. .........+|+.+++....+. . +. -...+.|.|-|+||..+..++.+ +. --++++++..|++
T Consensus 102 Sy~~~~--~~~~~~~~a~d~~~fl~~f~~~fp~~~~k~~~~yi~GESYgG~yvP~la~~i~~~~~~~inlkGi~iGng~~ 179 (421)
T d1wpxa1 102 SYSGSS--GVSNTVAAGKDVYNFLELFFDQFPEYVNKGQDFHIAGESYAGHYIPVFASEILSHKDRNFNLTSVLIGNGLT 179 (421)
T ss_dssp CBCSSC--CCCSHHHHHHHHHHHHHHHHHHCTHHHHTCCCEEEEEETTHHHHHHHHHHHHHHCSSCSSCCCEEEEESCCC
T ss_pred eecCCc--cccchHHHHHHHHHHHHHHHHhChhhhccCCCcEEeeecccccccHHHHHHHHHccCCCcceeeeEecCCcc
Confidence 542111 1111122345666665544433 2 11 23579999999999977766542 22 2478999999988
Q ss_pred ccc
Q 004766 597 DML 599 (732)
Q Consensus 597 d~~ 599 (732)
|..
T Consensus 180 dp~ 182 (421)
T d1wpxa1 180 DPL 182 (421)
T ss_dssp CHH
T ss_pred cch
Confidence 863
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=90.10 E-value=2.6 Score=41.37 Aligned_cols=100 Identities=9% Similarity=0.017 Sum_probs=54.9
Q ss_pred CEEEEEEEcCCCCeeEEEEEeCCCCCc-eEEeCCCCcCCCCCEEEEeEEECCCCcEEEEEEec--------c-------C
Q 004766 91 NKYFYFHNTGLQPQSVLYVQDSLDAKA-KVLLDPNTLSDDGTAALIKVSVSEDAKYLAYALSY--------S-------G 154 (732)
Q Consensus 91 ~~~~~~~~~~~~~~~~l~~r~~~~~~~-~~l~D~~~l~~~~~~~~~~~~~SPDG~~la~~~~~--------~-------G 154 (732)
|+|.|.-..+. ..|-|.+...-+. +++.-||.-. +.+++++++++..-..... . .
T Consensus 99 GrylFVNDkan---~RVAvIdl~~fkt~kIi~iPn~~~------~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~ 169 (459)
T d1fwxa2 99 GRFLFMNDKAN---TRVARVRCDVMKCDAILEIPNAKG------IHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVA 169 (459)
T ss_dssp EEEEEEEETTT---TEEEEEETTTTEEEEEEECSSCCS------EEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG
T ss_pred eeEEEEEcCCC---ceEEEEECcceeeeEEEecCCCCC------CceeecccCCCeEEEEccCccccccCCCCccccchh
Confidence 45666644332 4467766544332 3444455432 3456666666543222110 0 1
Q ss_pred CceEEEEEEECCCCceecccccceeeeeEEEEeCCcEEEEEEecC
Q 004766 155 SDWATIKLMRIEDQIVEADALSWFKFSSIAWTHDSKGFFYSRYPA 199 (732)
Q Consensus 155 ~e~~~i~v~dl~~g~~~~~~~~~~~~~~~~WspDg~~l~y~~~~~ 199 (732)
.....+.++|.++.+......-+.......++|||+++++++.+.
T Consensus 170 ~y~~~~t~ID~~tm~V~~QV~V~g~ld~~~~s~dGK~af~TsyNS 214 (459)
T d1fwxa2 170 NYVNVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNS 214 (459)
T ss_dssp -EEEEEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCT
T ss_pred hcceEEEEEecCCceEEEEeeeCCChhccccCCCCCEEEEEeccc
Confidence 123467789999887542222112346789999999999988654
|
| >d1ac5a_ c.69.1.5 (A:) Serine carboxypeptidase II {Baker's yeast (Saccharomyces cerevisiae), kex1(delta)p [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Serine carboxypeptidase-like domain: Serine carboxypeptidase II species: Baker's yeast (Saccharomyces cerevisiae), kex1(delta)p [TaxId: 4932]
Probab=89.93 E-value=1.5 Score=44.65 Aligned_cols=133 Identities=15% Similarity=0.174 Sum_probs=71.8
Q ss_pred eEEEEEEEcCCCCCCCCccEEEEEcCCCCccCCCCc---------Ch------hHHHHHHhcCcEEEEEcccCCCCCchh
Q 004766 464 KIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSF---------SV------SRTILMRHLGAVFCIANIRGGGEYGEE 528 (732)
Q Consensus 464 ~i~~~~~~p~~~~~~~~~P~vv~~hG~~~~~~~~~~---------~~------~~~~~l~~~G~~v~~~~~rG~g~~g~~ 528 (732)
.+..|++...........|++|++-||||.+....+ .. .-..|. +=..++.+|.+-|.||...
T Consensus 50 ~~ffw~fe~~~~~~~~~~Pl~lWlnGGPGcSS~~g~f~E~GP~~v~~~~~l~~Np~SWn--~~an~lfIDqPvGvGfSy~ 127 (483)
T d1ac5a_ 50 EYFFWKFTNNDSNGNVDRPLIIWLNGGPGCSSMDGALVESGPFRVNSDGKLYLNEGSWI--SKGDLLFIDQPTGTGFSVE 127 (483)
T ss_dssp EEEEEEEECSCSGGGSSCCEEEEECCTTTBCTHHHHHHSSSSEEECTTSCEEECTTCGG--GTSEEEEECCSTTSTTCSS
T ss_pred eEEEEEEEecCCCCCCCCCEEEEECCCCcHHHHHHHHHccCCeEECCCCceeeCCCccc--ccCCEEEEeCCCCcCeeec
Confidence 455555544332222346999999999998642110 00 001222 2356778887766666432
Q ss_pred HHhc-cccc---CC---ccHHHHHHHHHH-HHHHcCCCCCCcEEEEecChhHHHHHHHHhh----C--------CCeeeE
Q 004766 529 WHKG-GALA---KK---QNCFDDFISASE-YLISAGYTQSRKLCIEGGSNGGLLVGACINQ----R--------PDLFGC 588 (732)
Q Consensus 529 ~~~~-~~~~---~~---~~~~~D~~~~~~-~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~----~--------p~~f~a 588 (732)
-... +... .. .....|+...+. |+.....--.+++.|.|-|+||..+-.++.. + +=.+++
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~a~~~~~fl~~f~~~fp~~~~~~~yI~GESYgG~YvP~la~~i~~~n~~~~~~~~~inLkG 207 (483)
T d1ac5a_ 128 QNKDEGKIDKNKFDEDLEDVTKHFMDFLENYFKIFPEDLTRKIILSGESYAGQYIPFFANAILNHNKFSKIDGDTYDLKA 207 (483)
T ss_dssp CCSSGGGSCTTSSCCSHHHHHHHHHHHHHHHHHHCTTGGGSEEEEEEEETHHHHHHHHHHHHHHHHHHCCSTTSCCEEEE
T ss_pred CCCCccccccccccCCHHHHHHHHHHHHHHHHHhCcccccCCeEEeecccccchHHHHHHHHHHhccccccCCCccccee
Confidence 1100 0000 01 112344444433 3333333345789999999999877665542 1 114888
Q ss_pred EEEcCCcccc
Q 004766 589 ALAHVGVMDM 598 (732)
Q Consensus 589 ~v~~~p~~d~ 598 (732)
+.++.|++|.
T Consensus 208 i~IGNg~~d~ 217 (483)
T d1ac5a_ 208 LLIGNGWIDP 217 (483)
T ss_dssp EEEEEECCCH
T ss_pred eeecCCccCh
Confidence 8888887765
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=86.29 E-value=14 Score=34.90 Aligned_cols=114 Identities=11% Similarity=0.114 Sum_probs=62.9
Q ss_pred EecCCeEEEEeCCC--CCCceEEEEeCCCCC-CceEeccCCCCCceeEEEEecCCEEEEEEecC---------------C
Q 004766 310 ANDDTVFTFLTNKD--APKYKIIRVDLKEPN-DWFEVIPEAERDVLESATAVNLNQMIVSYLSD---------------V 371 (732)
Q Consensus 310 s~dg~~l~~~s~~~--~~~~~l~~~d~~~~~-~~~~l~~~~~~~~l~~~~~~~~~~l~~~~~~~---------------g 371 (732)
..||...+++.|.. .....++.++..+.. .|..-+.........++.+.+++.+|++-... .
T Consensus 107 ~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~ 186 (340)
T d1v04a_ 107 DDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLA 186 (340)
T ss_dssp CTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCC
T ss_pred cCCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCC
Confidence 34666555555542 334455666544432 12222333334556788888778888874321 1
Q ss_pred eeEEEEEeCCCCceeeecccccceeeEeecccCCcEEEEEEecCCCCceEEEEECCCC
Q 004766 372 KYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTE 429 (732)
Q Consensus 372 ~~~l~~~d~~~g~~~~~l~~~~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~ 429 (732)
...++.++. ++. +.+........++..++|++.++++.+. ..++++|++...
T Consensus 187 ~g~v~~~~~--~~~-~~~~~~l~~pNGI~~s~d~~~lyVa~t~---~~~i~~y~~~~~ 238 (340)
T d1v04a_ 187 WSFVTYYSP--NDV-RVVAEGFDFANGINISPDGKYVYIAELL---AHKIHVYEKHAN 238 (340)
T ss_dssp CEEEEEECS--SCE-EEEEEEESSEEEEEECTTSSEEEEEEGG---GTEEEEEEECTT
T ss_pred ceeEEEEcC--Cce-EEEcCCCCccceeEECCCCCEEEEEeCC---CCeEEEEEeCCC
Confidence 245555553 332 3322222334567788999988887654 457888887643
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=85.42 E-value=13 Score=33.73 Aligned_cols=110 Identities=9% Similarity=0.057 Sum_probs=60.5
Q ss_pred EEecCCeEEEEeCCCCCCceEEEEeCCCCCCceEeccCCCCCceeEEEEecCCEEEEEEecCCeeEEEEEeCCCCceeee
Q 004766 309 IANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQ 388 (732)
Q Consensus 309 ~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~l~~~~~~~~~~l~~~~~~~g~~~l~~~d~~~g~~~~~ 388 (732)
+.++|. +++.... ..++..++.++.. ...+-..........+.+.+++.+++..... ..|++++.+ |+.+..
T Consensus 121 vd~~G~-i~v~~~~---~~~~~~~~~~g~~-~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~--~~V~~~d~~-G~~~~~ 192 (279)
T d1q7fa_ 121 VDNKGR-IIVVECK---VMRVIIFDQNGNV-LHKFGCSKHLEFPNGVVVNDKQEIFISDNRA--HCVKVFNYE-GQYLRQ 192 (279)
T ss_dssp ECTTSC-EEEEETT---TTEEEEECTTSCE-EEEEECTTTCSSEEEEEECSSSEEEEEEGGG--TEEEEEETT-CCEEEE
T ss_pred cccCCc-EEEEeec---cceeeEeccCCce-eecccccccccccceeeeccceeEEeeeccc--cceeeeecC-Cceeee
Confidence 445554 4544332 3467777755432 2222122222345566666657788776655 578899986 776566
Q ss_pred cccc--cceeeEeecccCCcEEEEEEecCCCCceEEEEECCCCC
Q 004766 389 LPIE--IGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 430 (732)
Q Consensus 389 l~~~--~g~v~~~~~s~d~~~l~~~~ss~~~p~~~y~~d~~~~~ 430 (732)
+..+ .....+++.+++|+ ++++-+ . .-..+..++. +|+
T Consensus 193 ~g~~g~~~~P~giavD~~G~-i~Vad~-~-~~~~v~~f~~-~G~ 232 (279)
T d1q7fa_ 193 IGGEGITNYPIGVGINSNGE-ILIADN-H-NNFNLTIFTQ-DGQ 232 (279)
T ss_dssp ESCTTTSCSEEEEEECTTCC-EEEEEC-S-SSCEEEEECT-TSC
T ss_pred ecccccccCCcccccccCCe-EEEEEC-C-CCcEEEEECC-CCC
Confidence 5422 22244667788887 555422 1 2245777775 454
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=83.29 E-value=27 Score=35.58 Aligned_cols=81 Identities=15% Similarity=0.114 Sum_probs=48.2
Q ss_pred ceEEEEeCCCCC-CceEeccCCCCCceeEEEEecCCEEEEEEecCCeeEEEEEeCCCCceeeecccccceee-EeecccC
Q 004766 327 YKIIRVDLKEPN-DWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVN-AISARRE 404 (732)
Q Consensus 327 ~~l~~~d~~~~~-~~~~l~~~~~~~~l~~~~~~~~~~l~~~~~~~g~~~l~~~d~~~g~~~~~l~~~~g~v~-~~~~s~d 404 (732)
..|..+|+.+++ .|+.-.+. ..+.+...+. +.|+|....+ ..|+.+|.++|+.+-+..++.+... -++...|
T Consensus 444 G~l~AiD~~TG~~~W~~~~~~---~~~~g~l~Ta-gglVf~G~~d--g~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~d 517 (571)
T d2ad6a1 444 GQIRAFDLTTGKAKWTKWEKF---AAWGGTLYTK-GGLVWYATLD--GYLKALDNKDGKELWNFKMPSGGIGSPMTYSFK 517 (571)
T ss_dssp EEEEEECTTTCCEEEEEEESS---CCCSBCEEET-TTEEEEECTT--SEEEEEETTTCCEEEEEECSSCCCSCCEEEEET
T ss_pred ccEEEeccCCCceeeEcCCCC---CCCcceeEec-CCEEEEECCC--CeEEEEECCCCcEEEEEECCCCceecceEEEEC
Confidence 468899999887 35433221 2344444455 4466666666 4799999999998777776633221 1233346
Q ss_pred CcEEEEEEe
Q 004766 405 DSVVFISFT 413 (732)
Q Consensus 405 ~~~l~~~~s 413 (732)
|++.+...+
T Consensus 518 GkqYi~v~~ 526 (571)
T d2ad6a1 518 GKQYIGSMY 526 (571)
T ss_dssp TEEEEEEEE
T ss_pred CEEEEEEEe
Confidence 765443333
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=82.20 E-value=29 Score=35.20 Aligned_cols=81 Identities=10% Similarity=0.106 Sum_probs=47.8
Q ss_pred ceEEEEeCCCCC-CceEeccCCCCCceeEEEEecCCEEEEEEecCCeeEEEEEeCCCCceeeecccccceee-EeecccC
Q 004766 327 YKIIRVDLKEPN-DWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVN-AISARRE 404 (732)
Q Consensus 327 ~~l~~~d~~~~~-~~~~l~~~~~~~~l~~~~~~~~~~l~~~~~~~g~~~l~~~d~~~g~~~~~l~~~~g~v~-~~~~s~d 404 (732)
..|..+|+.+++ .|+.-.+. ....+...+. +.|+|....+ ..|+.+|.++|+.+-+..++.+... -++..-+
T Consensus 438 G~l~A~D~~tGk~~W~~~~~~---~~~gg~l~Ta-gglVF~G~~d--g~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~d 511 (560)
T d1kv9a2 438 GALLAWDPVKQKAAWKVPYPT---HWNGGTLSTA-GNLVFQGTAA--GQMHAYSADKGEALWQFEAQSGIVAAPMTFELA 511 (560)
T ss_dssp EEEEEEETTTTEEEEEEEESS---SCCCCEEEET-TTEEEEECTT--SEEEEEETTTCCEEEEEECSSCCCSCCEEEEET
T ss_pred cceEEEeCCCCeEeeeccCCC---CCCCceeEEC-CCEEEEECCC--CcEEEEECCCCcEeEEEECCCCccccCEEEEEC
Confidence 578899999886 35533332 2223344455 4566666666 4799999999998766666533221 1222346
Q ss_pred CcEEEEEEe
Q 004766 405 DSVVFISFT 413 (732)
Q Consensus 405 ~~~l~~~~s 413 (732)
|++.++..+
T Consensus 512 Gkqyv~v~a 520 (560)
T d1kv9a2 512 GRQYVAIMA 520 (560)
T ss_dssp TEEEEEEEE
T ss_pred CEEEEEEEe
Confidence 765444333
|
| >d1uwca_ c.69.1.17 (A:) Feruloyl esterase A {Aspergillus niger [TaxId: 5061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Feruloyl esterase A species: Aspergillus niger [TaxId: 5061]
Probab=80.69 E-value=1.6 Score=40.10 Aligned_cols=38 Identities=21% Similarity=0.115 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhh
Q 004766 542 FDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQ 581 (732)
Q Consensus 542 ~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~ 581 (732)
.+++...++.++++. ...+|.+.|||+||.++..++..
T Consensus 108 ~~~i~~~i~~~~~~~--~~~~i~vTGHSLGGAlA~L~a~~ 145 (261)
T d1uwca_ 108 QDQVESLVKQQASQY--PDYALTVTGHSLGASMAALTAAQ 145 (261)
T ss_dssp HHHHHHHHHHHHHHS--TTSEEEEEEETHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhC--CCcceEEeccchhHHHHHHHHHH
Confidence 456666677666552 12489999999999998877653
|
| >d1lgya_ c.69.1.17 (A:) Triacylglycerol lipase {Rhizopus niveus [TaxId: 4844]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Triacylglycerol lipase species: Rhizopus niveus [TaxId: 4844]
Probab=80.51 E-value=0.86 Score=42.22 Aligned_cols=38 Identities=18% Similarity=0.227 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEecChhHHHHHHHHhh
Q 004766 542 FDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQ 581 (732)
Q Consensus 542 ~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~ 581 (732)
.+++..+++.++++. ...+|.+.|||+||.++..++..
T Consensus 116 ~~~i~~~v~~~~~~~--~~~~i~vtGHSLGGAlA~L~a~~ 153 (265)
T d1lgya_ 116 VNDYFPVVQEQLTAH--PTYKVIVTGHSLGGAQALLAGMD 153 (265)
T ss_dssp HHHHHHHHHHHHHHC--TTCEEEEEEETHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhC--CCceEEEEecccchHHHHHHHHH
Confidence 456666666665542 13589999999999998877653
|